BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (555 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 1151 0.0 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 858 0.0 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 558 e-157 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 463 e-129 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 443 e-123 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 443 e-123 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 439 e-121 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 414 e-114 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 390 e-107 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 390 e-107 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 379 e-103 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 354 6e-96 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 311 3e-83 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 307 6e-82 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 273 2e-71 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 270 1e-70 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 261 5e-68 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 259 2e-67 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 253 1e-65 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 249 2e-64 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 242 3e-62 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 238 5e-61 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 237 8e-61 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 234 5e-60 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 233 2e-59 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 229 3e-58 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 228 6e-58 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 225 3e-57 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 225 3e-57 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 225 4e-57 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 223 1e-56 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 222 3e-56 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 222 3e-56 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 221 4e-56 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 218 7e-55 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 217 1e-54 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 216 2e-54 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 215 4e-54 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 212 3e-53 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 211 7e-53 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 209 3e-52 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 207 7e-52 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 204 6e-51 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 202 2e-50 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 199 2e-49 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 199 2e-49 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 196 2e-48 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 192 3e-47 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 192 4e-47 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 189 2e-46 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 187 1e-45 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 183 2e-44 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 179 2e-43 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 178 4e-43 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 176 2e-42 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 176 2e-42 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 174 7e-42 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 174 9e-42 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 174 1e-41 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 173 2e-41 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 170 1e-40 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 167 1e-39 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 166 3e-39 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 166 3e-39 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 165 4e-39 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 165 5e-39 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 164 6e-39 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 162 4e-38 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 162 4e-38 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 161 6e-38 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 160 8e-38 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 160 1e-37 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 160 1e-37 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 158 6e-37 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 157 7e-37 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 157 8e-37 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 157 1e-36 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 157 1e-36 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 154 7e-36 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 154 8e-36 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 154 1e-35 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 152 4e-35 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 152 5e-35 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 151 7e-35 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 147 7e-34 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 147 9e-34 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 145 3e-33 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 145 4e-33 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 145 5e-33 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 144 1e-32 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 143 1e-32 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 142 3e-32 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 140 1e-31 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 140 1e-31 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 138 5e-31 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 138 7e-31 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 135 3e-30 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 134 7e-30 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 134 8e-30 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 134 9e-30 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 134 1e-29 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 134 1e-29 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 133 1e-29 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 133 2e-29 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 133 2e-29 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 132 4e-29 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 132 4e-29 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 131 5e-29 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 131 6e-29 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 131 6e-29 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 130 1e-28 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 129 3e-28 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 129 3e-28 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 128 7e-28 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 127 7e-28 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 127 9e-28 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 127 2e-27 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 126 2e-27 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 125 3e-27 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 125 4e-27 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 125 5e-27 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 124 8e-27 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 124 1e-26 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 123 1e-26 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 123 2e-26 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 123 2e-26 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 122 5e-26 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 121 9e-26 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 120 1e-25 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 120 1e-25 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 120 1e-25 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 120 2e-25 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 120 2e-25 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 118 7e-25 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 117 8e-25 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 117 2e-24 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 116 2e-24 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 115 5e-24 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 115 6e-24 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 115 6e-24 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 113 2e-23 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 113 2e-23 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 113 2e-23 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 112 4e-23 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 112 5e-23 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 108 4e-22 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 108 8e-22 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 107 9e-22 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 107 1e-21 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 105 5e-21 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 104 7e-21 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 103 1e-20 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 103 2e-20 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 103 2e-20 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 102 6e-20 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 100 1e-19 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 100 2e-19 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 100 2e-19 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 100 2e-19 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 94 1e-17 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 94 2e-17 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 92 5e-17 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 91 8e-17 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 91 1e-16 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 90 3e-16 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 86 4e-15 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 83 3e-14 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 83 3e-14 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 82 6e-14 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 80 2e-13 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 77 2e-12 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 77 2e-12 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 75 5e-12 UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermac... 75 5e-12 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 74 1e-11 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 74 2e-11 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 74 2e-11 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 72 4e-11 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 72 6e-11 UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 72 7e-11 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 71 1e-10 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 70 2e-10 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 69 3e-10 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 69 5e-10 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 69 7e-10 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 68 1e-09 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 67 1e-09 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 67 2e-09 UniRef50_Q2FTW5 Membrane bound hydrogenase subunit mbhK n=1 Tax=... 64 1e-08 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 62 5e-08 UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paen... 62 8e-08 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 61 1e-07 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 60 1e-07 UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus K... 60 2e-07 UniRef50_B5IS37 Respiratory-chain NADH dehydrogenase, 30 Kd subu... 60 2e-07 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 60 2e-07 UniRef50_A1SE29 NADH-quinone oxidoreductase subunit C n=166 Tax=... 60 3e-07 UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K ... 60 3e-07 UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpet... 59 3e-07 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 59 3e-07 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 59 4e-07 UniRef50_B2KDT7 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 59 5e-07 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 59 5e-07 UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Ch... 58 8e-07 UniRef50_B6YU97 Membrane bound hydrogenase, NiFe-hydrogenase lar... 58 1e-06 UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 58 1e-06 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 57 2e-06 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 57 2e-06 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 57 2e-06 UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculu... 57 3e-06 UniRef50_A4J658 NADH-quinone oxidoreductase n=1 Tax=Desulfotomac... 57 3e-06 UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=A... 57 3e-06 UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit... 56 3e-06 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 56 3e-06 UniRef50_D2R5G8 NADH (Or F420H2) dehydrogenase, subunit C n=1 Ta... 56 4e-06 UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 56 4e-06 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 56 5e-06 UniRef50_C1TPN9 Ni,Fe-hydrogenase III component G n=1 Tax=Dethio... 55 6e-06 UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase ... 55 7e-06 UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium ce... 55 7e-06 UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax... 55 7e-06 UniRef50_C9LVK2 NADH-quinone oxidoreductase n=1 Tax=Selenomonas ... 55 9e-06 UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Ch... 55 9e-06 UniRef50_B9L171 NADH-quinone oxidoreductase n=2 Tax=Thermomicrob... 55 1e-05 UniRef50_Q1V2T1 NADH-quinone oxidoreductase n=4 Tax=Bacteria Rep... 54 1e-05 UniRef50_C8W5A9 NADH-quinone oxidoreductase n=1 Tax=Desulfotomac... 54 1e-05 UniRef50_B0TH79 Proton-translocating NADH-ubiquinone oxidoreduct... 54 1e-05 UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C... 54 1e-05 UniRef50_Q67KN8 NADH-quinone oxidoreductase n=1 Tax=Symbiobacter... 54 2e-05 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 54 2e-05 UniRef50_Q1NLI0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 54 2e-05 UniRef50_B5IS23 Respiratory-chain NADH dehydrogenase, 30 Kd subu... 54 2e-05 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 54 2e-05 UniRef50_B8J1D5 NADH-quinone oxidoreductase n=1 Tax=Desulfovibri... 54 2e-05 UniRef50_A0LDS5 NADH-quinone oxidoreductase n=1 Tax=Magnetococcu... 54 2e-05 UniRef50_D2L5T2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 54 2e-05 UniRef50_C6A3Z4 Membrane-bound hydrogenase MBH 2, subunit Mbh2K ... 54 2e-05 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 54 2e-05 UniRef50_A1ALK5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 54 2e-05 UniRef50_A9VS96 NADH (Or F420H2) dehydrogenase, subunit C n=15 T... 53 2e-05 UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydi... 53 3e-05 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 53 3e-05 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 53 3e-05 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 53 3e-05 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 53 4e-05 UniRef50_A1W1H6 NADH-quinone oxidoreductase n=18 Tax=Campylobact... 53 4e-05 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 53 4e-05 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 53 4e-05 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 52 4e-05 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 52 4e-05 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 1151 bits (2977), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/555 (100%), Positives = 555/555 (100%) Query: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL Sbjct: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 Query: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE Sbjct: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD Sbjct: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD Sbjct: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD Sbjct: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE Sbjct: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR Sbjct: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF Sbjct: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK Sbjct: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 Query: 541 EIERYGIDRNRSPLK 555 EIERYGIDRNRSPLK Sbjct: 541 EIERYGIDRNRSPLK 555 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/568 (70%), Positives = 468/568 (82%), Gaps = 17/568 (2%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE-GNSDARV 183 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE G+ V Sbjct: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 Query: 364 MLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNIPKTLFT 407 +LL+TPNMEQRT GIG LD +IARD R DHP+ YG +P + + Sbjct: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 Query: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 265/554 (47%), Positives = 380/554 (68%), Gaps = 22/554 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 +N E + ++ + G +L E+ P+Q+ + V+ LP+V Y+YY+ G+L + G+ Sbjct: 2 NNGMERLEEKIRKEIGGLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGS 61 Query: 67 DERTLNGHYAVYYALSME----GAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 DER+L+G Y +YY S+E +K W+VV + +F SVTP++PAA W ERE+R Sbjct: 62 DERSLHGAYRLYYVFSIEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVR 121 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 D+ GL+P PD RRLVLPDDWPE +HPLRK+ P E P + EG + Sbjct: 122 DLLGLVPENHPDPRRLVLPDDWPEGVHPLRKEFTYTERPPSVARKCEFRPSV-EGEGIMQ 180 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V P+GP+H +DEPG FR+F+DGE++VD DYR+FYVHRG+EKLAE+R+ YN+V F+++R+ Sbjct: 181 V-PIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERI 239 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGICG+AHS AY +VE ALGIEVP+RA IR+++LEVERLHSHLLNLGL+CH GFD G Sbjct: 240 CGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWG 299 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM FF+ REK M MAELL G RKTYG+N++GGVRRDI +++ + L++++E+ + ++ Sbjct: 300 FMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVL 359 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 + +L+T + R + +G+L R +A RD R DHPYA Y + + Sbjct: 360 DAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVP 419 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV +R+ VR +ETF++++++ L+NMP P+ E Y+P+A LG+VEAPRGE Sbjct: 420 VHSEGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGE 479 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 DVH+ + G + K++RWR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+RV + Sbjct: 480 DVHFVITGPHSKVYRWRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIV 539 Query: 527 VDVRKRQSKTVPYK 540 VDV+ +++ PY+ Sbjct: 540 VDVKSGRTRVFPYE 553 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust. Identities = 238/553 (43%), Positives = 347/553 (62%), Gaps = 27/553 (4%) Query: 20 QFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW----LPVLFGNDERTLNGHY 75 +F + D ++ Q ITV+ LP++V Y + H W L + DER LNG + Sbjct: 36 KFGEKIRDVKQAAYNQWIITVEREDLPEIVLY-FLNHPEWKETQLSSMVATDERPLNGKF 94 Query: 76 AVYYALSMEG-AEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 ++ Y LS+ G A ++ V+A + D F S+ + A W ERE +M GL G PD Sbjct: 95 SITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAMEMLGLTAEGHPD 154 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSD 194 RRLVLPDDWP ++PLRKD Y P + YP+ E D V+P GP H+ + Sbjct: 155 PRRLVLPDDWPSCVYPLRKD-FHYSNSP---PGEKFYPY-KEPKKDEIVVPYGPYHVALE 209 Query: 195 EPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R+CGICG HS AY Sbjct: 210 EAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICGCTHSTAY 269 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 +VENA GIEVP+RA IR+I+LE+ERLHSHLLN G+ H VG+D GFM+ +R+RE M Sbjct: 270 CQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYGFMKAWRIREHVM 329 Query: 315 TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQR 374 +AE L G+RKTYG+ L+GGVRRD+L+ ++ ++++++ + SELV+ ++T +R Sbjct: 330 WLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELVDEAISTSTFVKR 389 Query: 375 TQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVM 418 +G+G+L ++A+ D+R DHPYA Y + + + GDV +R + Sbjct: 390 LEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVPVYKEGDVLARAL 449 Query: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 VR++E F+S+ ++E ALD MP +L E P++ A+G EAPRGE++H+ M G+N K Sbjct: 450 VRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRGENIHYVMTGENNK 509 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVP 538 ++R+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+RV +VDV + + + Sbjct: 510 VYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQVVDVESGKVRVLS 569 Query: 539 YKEIERYGIDRNR 551 E + I +R Sbjct: 570 ETEFNKLSIKASR 582 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust. Identities = 218/493 (44%), Positives = 315/493 (63%), Gaps = 28/493 (5%) Query: 53 YYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVP 112 YY G G DER +NG +A+Y+ + + E ++V+K S E PS+TP + Sbjct: 40 YYYSSG-----MGVDERPINGRFAMYHIFNCD-TEGRYVVLKITSPEGSPEVPSITPVIK 93 Query: 113 AAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD-AMDYRLRPEPTTDSETY 171 A W ERE DM G++ G P RL+LPDDWPE ++PLRKD + +L P + E Sbjct: 94 GAEWSEREAMDMLGIVFSGHPKPERLILPDDWPEGVYPLRKDFPYNKKLPPSKPIEKE-- 151 Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 E D IP+GP H + EP +F L+V G+++VDA+YR F++HRGMEKLAE+RM Sbjct: 152 ---REHKKDVMEIPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGFHIHRGMEKLAESRMT 208 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 N++ FL++R+CGICG HS AY +VE+A GI VP+RA IR+I+LEVER+HSHLL G Sbjct: 209 INQIPFLAERICGICGCTHSAAYCQAVEDAAGIYVPERAQYIRTIMLEVERIHSHLLWFG 268 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 + CH +GFD+GFM +R RE M +AEL+ G+RKTYG+N++GGVRRDI ++++ +TLKL+ Sbjct: 269 VVCHLLGFDSGFMHIWRAREYIMDIAELITGNRKTYGINIVGGVRRDITEDKKEKTLKLL 328 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPY 395 + + E+++ + + +R +G+G+L ++ AR D+R DHPY Sbjct: 329 DMVEKESREVLDNIAEMKELRERMEGVGVLPKKEAREIGVVGPMARSSGIDTDVRRDHPY 388 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAF 455 A Y ++ + + GDVF+R +VR +E F+S M+ AL+NMP L+ + + P Sbjct: 389 AAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNMIRQALENMPPGELINDEYEIPPFKL 448 Query: 456 ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 +G EAPRGE++H + ++RW RAATY N P + MLRGN V+DAPLII S+D Sbjct: 449 GIGVTEAPRGENIHAVITWGENMIYRWHPRAATYNNLPAVPIMLRGNDVADAPLIIASID 508 Query: 516 PCYSCTDRVTLVD 528 PC+SCTD V+++D Sbjct: 509 PCFSCTDHVSIID 521 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 443 bits (1139), Expect = e-123, Method: Compositional matrix adjust. Identities = 233/562 (41%), Positives = 339/562 (60%), Gaps = 34/562 (6%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH----DGWLPVLFGNDER 69 L F + + +R T Q + +LPD V + ++ H + L G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLW-WHNHPEFKETHLSTAVGTDER 98 Query: 70 TLNGHYAVYYALSMEGA-----EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 LNG + L+++ E W+ +KA + AD FPSV ++PAA+W ERE++D+ Sbjct: 99 PLNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDL 158 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVI 184 G PVG PD RRL+LP+DWPE ++PLRKD MDYR P +E Y EG + ++ Sbjct: 159 LGFNPVGHPDPRRLILPEDWPEGVYPLRKD-MDYRHSPMAEVKTE-YRETPEGTT---LV 213 Query: 185 PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 P+GP+H +EP HFRLFV GE+IVD DYR FY HRG+EK E R+ YN+V FL++R+CG Sbjct: 214 PMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICG 273 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 ICG+ HSV+Y +VE +++P RA IR+++LE+ER+H+HLL +G++ H VG+DTGFM Sbjct: 274 ICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFM 333 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 +R+RE M + E L G+RK YG+N++GGVRRDIL ++ + LK+V+++R + + +++ Sbjct: 334 HAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDI 393 Query: 365 LLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYAD---YGNIPKTL 405 L T +R +G+GIL ++A+ D R D Y + + Sbjct: 394 ALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKV 453 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRG 465 + GDV +RV+VR+ E F+SL ++E +D MP ++ + ALGF EA RG Sbjct: 454 PVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHRG 513 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVT 525 E VH+ M G+ K++RW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+RV Sbjct: 514 EVVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQ 573 Query: 526 LVDVRKRQSKTVPYKEIERYGI 547 VDV + K + E I Sbjct: 574 FVDVETGKVKVLTEAEFNELSI 595 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/482 (45%), Positives = 309/482 (64%), Gaps = 23/482 (4%) Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G DER +N +A+Y+ + E AE+ +++K + PS+TP + A W ERE D Sbjct: 46 MGVDERPVNMRFAMYHVFNCE-AERRHVILKLTTPTNELTLPSITPVIEGASWSEREAMD 104 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD-AMDYRLRPEPTTDSETYPFINEGNSDAR 182 M G+I G P+ RL+LP+DWPE ++PLRKD + +L P + P D Sbjct: 105 MLGIIFEGHPEPERLILPEDWPEGVYPLRKDFPYNKKLPPAKPKEGRKKP-----RPDII 159 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +P+GP H T EP +F L+V G++IVDA YR F++HRGMEKLAE+RM N+V FL++R+ Sbjct: 160 EVPLGPYHPTLHEPEYFELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERI 219 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGICG HS AY +VE+A I VP+RA IR+I+LEVERLHSHLL G++CH +GFD+G Sbjct: 220 CGICGCTHSTAYCQAVEDATNIYVPERARYIRTIMLEVERLHSHLLWFGVACHLLGFDSG 279 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM +R RE M +AEL+ G+RKTYG+NLIGGVRRDI +E++ + L+L+ D E++ Sbjct: 280 FMHLWRAREYIMDIAELITGNRKTYGINLIGGVRRDIPEEKKRKVLELLDLAEKDSREIL 339 Query: 363 EMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLF 406 + ++ +++R + +G+L ++ R D+R DHPYA YG++ + Sbjct: 340 DNVVKMGELKERMENVGVLPKKKGREIGVVGPVARASGIDTDVRRDHPYAAYGDLDFEVP 399 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + G DV SR +VR ETF S +M+ ALDNMP+ L+ E + LG EAPRGE Sbjct: 400 VYKGEDVLSRFLVRYDETFQSFSMIRQALDNMPEGELINEDYEIPGFKLGLGVTEAPRGE 459 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 DVH + K++RW RA+TY N P + MLRGN ++DAP+II S+DPC+SCTD V++ Sbjct: 460 DVHVVITWGENKVYRWHPRASTYNNLPAVPVMLRGNDIADAPIIIASIDPCFSCTDHVSI 519 Query: 527 VD 528 +D Sbjct: 520 ID 521 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/542 (40%), Positives = 322/542 (59%), Gaps = 29/542 (5%) Query: 23 GAVLDEERQTPEQ-VTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYAL 81 G ++ E + +Q + + + N L V ++ + + + DER+LNG +A YY Sbjct: 17 GDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAVDERSLNGTFASYYIF 76 Query: 82 SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLP 141 ++ A I+VK AD PS+ VPAA W E E D+ G I R VLP Sbjct: 77 GLDAAH-LNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLG-IKFENRKVHRFVLP 134 Query: 142 DDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRL 201 D+WPE ++PLRKD ++Y RP+P P + IP+GP H EP +F L Sbjct: 135 DEWPEGIYPLRKD-VEYTYRPKPRKVPRQPP-------TGQRIPIGPYHPALHEPEYFEL 186 Query: 202 FVDGEQIVDADYRLFYVHRGMEKLAET-RMGYNEVTFLSDRVCGICGFAHSVAYTNSVEN 260 +V+GE++VD +Y F+VHRG+EKLAE R Y ++ FL++R+CGICGF HSV+YT SVE Sbjct: 187 YVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSYTMSVER 246 Query: 261 ALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELL 320 A I+VP+RA IRSI+LE+ERLHSHLL +G+ CH +G+D GFM +R+REK M +AELL Sbjct: 247 AAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVMVLAELL 306 Query: 321 IGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGI 380 GSRKTYG+NL+GGVR+DI ++ + +R++ L +++ + + +R G GI Sbjct: 307 TGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLITSISQIVKRASGTGI 366 Query: 381 LDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKET 424 L R A RD+R D+PYA Y ++ + + GD +R++VR+ E Sbjct: 367 LSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVYNEGDNLARLLVRIDEV 426 Query: 425 FDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 F+S+ +LE +D +P P++ E +G VEAPRGE +H ++ G + +RWR Sbjct: 427 FESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVIHVTITGHGRP-YRWRV 485 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIER 544 RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD+R + ++I + Sbjct: 486 RAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVDLRSNRRFKASMEQIIK 545 Query: 545 YG 546 G Sbjct: 546 AG 547 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 211/551 (38%), Positives = 322/551 (58%), Gaps = 23/551 (4%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERT 70 + IL + +FPG V P+++ + + + Y++ G L D Sbjct: 5 QTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCTDMGP 64 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + G Y + YA S++ AE + + D + P++T +P A W ERE DM G++ Sbjct: 65 VTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGVVAE 123 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE-GN-SDARVIPVGP 188 G P+ RRL+L +DWPED+ P+RKD + +P P + T P + GN S A +I VGP Sbjct: 124 GHPNPRRLLLSEDWPEDLFPMRKD-FPHDFKP-PKAEKITTPLRDPLGNESKATIISVGP 181 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 T DEP +FRLF +GE+I+ +DYR F+ HRG+EKL++T + YN+V F+++RVCGICGF Sbjct: 182 FFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGF 241 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 HS Y +VE+A GIE+P RA IRSI++E+ERLHSHLL LGL+ H++GFDT MQ +R Sbjct: 242 VHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQSWR 301 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 +RE M + E + G+RKTYG+NL+GGVRRD+ + + V ++ + EL+ + Sbjct: 302 IREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVAGD 361 Query: 369 PNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGD 412 +++ R +G+L + AR D R D+PYA + ++ GGD Sbjct: 362 ESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGD 421 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH-AFALGFVEAPRGEDVHWS 471 +++R +VRV E S+ +++ + +P+ ++ GF P G EAPRGE VH+ Sbjct: 422 IWARTLVRVDEVRSSVDLIKQMITKLPEGEIMA-GFGPIPAWREGYGIAEAPRGECVHYV 480 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRK 531 G + + +RWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+RV VD + Sbjct: 481 QTGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVDTKS 540 Query: 532 RQSKTVPYKEI 542 + +T K++ Sbjct: 541 KAIRTYTEKDL 551 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 390 bits (1003), Expect = e-107, Method: Compositional matrix adjust. Identities = 193/469 (41%), Positives = 295/469 (62%), Gaps = 20/469 (4%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 ++VK ++A S++ +PA +W ERE D++G+ G PD RRLVLPD+WP+++HP Sbjct: 75 VIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNWPQEVHP 134 Query: 151 LRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVD 210 LRK+ Y +P + EG + VIP+GP + + +EP +FRL VDGE+I D Sbjct: 135 LRKN-FSYNSKPPESKQPAPLKKPEEGKT---VIPIGPFYPSLEEPAYFRLIVDGEEIAD 190 Query: 211 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRA 270 DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A GIE+P RA Sbjct: 191 FDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAGIEIPLRA 250 Query: 271 HTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLN 330 IRS+ LE+ERLHSHLL +GL+ H VGFDT FMQ +R+RE M + E++ G+RKTYG+N Sbjct: 251 KFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGNRKTYGIN 310 Query: 331 LIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--- 387 ++GGV D+ + K++ ++ +V EL E++L ++ R + +G+L A+ Sbjct: 311 IVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKYDDAKKYC 370 Query: 388 -------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA 434 D+R + PYA Y + + GDV++R +VR++E S+ ++ Sbjct: 371 VCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILISINIIRQI 430 Query: 435 LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 L+N+P+ P + +P A+ ++EAPRG+ H+ M G + +RW RA +Y N+ Sbjct: 431 LENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAPSYQNYQA 490 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIE 543 L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ K +E++ Sbjct: 491 LSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEELK 539 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 206/557 (36%), Positives = 324/557 (58%), Gaps = 24/557 (4%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNG 73 L LK +F A+ + ++ + + + + QY++ D + G+D+R +G Sbjct: 6 LQQLKDKFGSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVISIGSDDRPYSG 65 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + V++ + + EK + + ++ S++ +PAA W ERE++D+ G+ PVG P Sbjct: 66 KFLVFHQFAFD-KEKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGHP 124 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITS 193 +RLVLPD WP+ HPLRKD + PE + + F +E +P GP H T Sbjct: 125 YPKRLVLPDAWPDGHHPLRKD-FAWNKIPEGYDEEREFDF-DETPPGCTAVPFGPFHPTL 182 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+CGICG HS+A Sbjct: 183 DEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLA 242 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 + +VEN G+ VP RA IR+I+LE+ERLHSH + +GL+CH VGFDT FMQ +R+RE Sbjct: 243 FCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIREPI 302 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 M +AE + G+RKTYGL +IGGVR D E +T ++ ++ ++ ++V + N+ Sbjct: 303 MWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNIMA 362 Query: 374 RTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRV 417 RT G+G+ D+ + + D R DHPYA Y + + T DV+ RV Sbjct: 363 RTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWGRV 422 Query: 418 MVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF--VEAPRGEDVHWSMLGD 475 +VR+ E F+S+ ++ D MP PL+ + + P A +G+ +EAPRGE H+++ GD Sbjct: 423 VVRMLEVFESINIIRQCFDKMPQGPLVADITTELP-AGRVGYTSIEAPRGESHHFAITGD 481 Query: 476 NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSK 535 + + RWR RA TY N + M++ ++D + +G +DPC SCTDR+ +D+R K Sbjct: 482 DNRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRMETIDIRTGARK 541 Query: 536 TVPYKEIERYGIDRNRS 552 + + + E + R+R Sbjct: 542 S--WTKAELLSLSRSRK 556 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 354 bits (908), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 195/534 (36%), Positives = 295/534 (55%), Gaps = 23/534 (4%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFG 65 S+NR + + L QF G + ++ ++ K L +V Y+ + L + Sbjct: 3 STNR-QLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMIC 61 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 NDERTL+ H+ +YY S++ E +++V V EFPS+TP++PAA W EREI+DM+ Sbjct: 62 NDERTLDKHFKIYYVFSLQ-REDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMF 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIP 185 GLIPVG P LVL ++PE+ +PLRKD D + R P +S+ PF IP Sbjct: 121 GLIPVGHPRPETLVLHGNFPENTYPLRKD-FDIQTRI-PHLESKL-PFFRVEGEGVFEIP 177 Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 VGP+H EPGHFR G+ I D +LF+ H+G EK+ ET M Y + FL++R+CG+ Sbjct: 178 VGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGV 236 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 C +H+ Y ++E IE+P RA IR+I++E+ER+++H+ ++G C F G Sbjct: 237 CAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAH 296 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 FR+RE + E + G+R G+ IGGVR DI + L L+ ++ D +L +M+ Sbjct: 297 GFRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMM 356 Query: 366 LATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTF- 408 + ++ R + G L +IAR D R +HPYA Y + + F Sbjct: 357 FKSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFH 416 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 GDV +R+ VRV E + S+ ++E + M PL T P+ AL +VE+PRGE++ Sbjct: 417 YEGDVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENI 476 Query: 469 HWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +W M KLFR++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 477 YWIMTAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 311 bits (798), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 272/482 (56%), Gaps = 23/482 (4%) Query: 58 GWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWG 117 +L + G DER NGH++VY + G + + K +++A++ F S++P +P+A W Sbjct: 51 AYLLTMTGVDERDYNGHFSVYSVFGLPG-DTTLVETKIVLNAENPTFTSISPVMPSAHWL 109 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 EREI+DM G++P G PD RR+ + DWP+D+ P+RKD + R P + + EG Sbjct: 110 EREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDFIAGRQVPRVQGEMQFCKVEGEG 169 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +PVGP+H EPGHFR F GE +++ +LFY HRG+EK AE + + + Sbjct: 170 LYQ---VPVGPVHAGIIEPGHFRFFTFGEDVINLQAQLFYTHRGIEKTAEGKH-FLDAVL 225 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +++RVCG+C +H+V+Y ++E+ GI P RA IR++LLE+ERL++H+ ++G C + Sbjct: 226 VAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMCAGI 285 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 GF G + ++E+ M M L G R G + GGV+ D+ + + + + ++ + Sbjct: 286 GFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKIDLKDTEGIG--RALDTVKRE 343 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNI 401 + EL + +L++ ++ R Q G+L ARDL R + PYA Y + Sbjct: 344 LKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARASGVNRDLRREFPYAAYRRV 403 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVE 461 + GDV+ R++ R++E+ S ++ +N+P L +P+ A+G+ E Sbjct: 404 SFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGELQAPITYLQPYHTAVGYTE 463 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 + RG +VHW M G + ++R+ R+A++ NWPV+ L GN V D PLI S + CY+C Sbjct: 464 SARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLCLPGNIVPDFPLINKSFELCYACL 523 Query: 522 DR 523 DR Sbjct: 524 DR 525 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 179/516 (34%), Positives = 276/516 (53%), Gaps = 23/516 (4%) Query: 23 GAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALS 82 G + R V + + LP V ++ ++ L L D R + G Y +Y + Sbjct: 15 GEEMASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATLHVADTRQMTGGYTMYAVMP 74 Query: 83 MEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPD 142 + +E + ++A V F S+TP + +A W EREI DM+GL PVG PD R LVL D Sbjct: 75 V-ASENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIADMFGLTPVGHPDLRPLVLYD 133 Query: 143 DWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLF 202 WPED HPLRKDA RP P D+ YP+ IPVGP+H EPGHFR Sbjct: 134 TWPEDYHPLRKDAPG---RP-PKVDT-YYPYHRVEGEGVFEIPVGPVHAGVIEPGHFRFS 188 Query: 203 VDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENAL 262 V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R G G AHS AY +VE Sbjct: 189 VAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERTSGDNGMAHSTAYCQAVEQLA 247 Query: 263 GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIG 322 GIEVP RA IR++ LE+ER+++HL ++G ++ G + +RE+ + + E + G Sbjct: 248 GIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAYILRERMLQLNECITG 307 Query: 323 SRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD 382 SR +N IGGVR+D+ +E + + + + D + V+++ ++ RT+ G L Sbjct: 308 SRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFVDLVNRQTSILDRTETTGKLP 367 Query: 383 RQ----------------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFD 426 + ++RD+R DHPYA Y ++ + GDV +R+ V++ E ++ Sbjct: 368 LEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVHIRKEGDVNARMQVKIGEIYE 427 Query: 427 SLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 S++++E ALD +P + + + VEAPRGE +HW + G+N + FR + R Sbjct: 428 SMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGELLHWILSGENDRPFRHKIRD 487 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ NW + GN V D PL+ S + YS D Sbjct: 488 PSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 273 bits (697), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 170/524 (32%), Positives = 261/524 (49%), Gaps = 23/524 (4%) Query: 17 LKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYA 76 L+ +F G + + P+++ + + L + LY + G L +F D R + Sbjct: 14 LQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAGGAGFY 73 Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 VYY +++ A +++V+ +V A+ E S+T V A W EREI+D++GL VG P+ R Sbjct: 74 VYYLYAVDAAHG-FVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVGHPNPR 132 Query: 137 RLVLPDDWPEDMHPLRKDAMDYRLRPE-PTTDSETYPFINEGNSDARVIPVGPLHITSDE 195 R VL DDWPE + PLRKD + L+ + P E + F +PVGP+H E Sbjct: 133 RCVLHDDWPE-VFPLRKD---FDLQTQLPPFSGERHKFREVAGEGVFQVPVGPVHAGVIE 188 Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 PGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+ A+ Sbjct: 189 PGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHATAFC 247 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMT 315 +++E A G+ P R +R++ LE+ER+ +H+ ++G C V F T M R++E+ + Sbjct: 248 HAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKEQVLR 307 Query: 316 MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 E L G+R G+ +GGVR D Q V + +LVE++ + R Sbjct: 308 WNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGTRDRL 367 Query: 376 QGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMV 419 + G+L +AR DLR D P Y + T+ FT GDV R++V Sbjct: 368 ETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQRRMVV 427 Query: 420 RVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 R +E F SL ++ L MP + T ALG+VE RGE HW +L Sbjct: 428 RREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAPGNRL 487 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 488 ARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 179/536 (33%), Positives = 266/536 (49%), Gaps = 56/536 (10%) Query: 32 TPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF---GNDERTLNGHYAVYYALSMEGAEK 88 T + + +K LP+V++ L+ + P+L GNDER+L + +Y L G Sbjct: 31 TKNEGLVWLKPACLPEVMEQLWLKVPS-RPLLMTHVGNDERSLGHGFVIYLLLHFPGDFT 89 Query: 89 CWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDM 148 + + + + FPS+T PA W ERE+RD+ GL P G PD R LVL W Sbjct: 90 LTLGARGI----EKSFPSLTLLCPALNWPEREVRDLLGLHPDGHPDPRPLVLHPGWTGGF 145 Query: 149 HPLRKDA----------------MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHIT 192 +PLRK + P+P + +E EG + IPVGP+H Sbjct: 146 YPLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEAE---GEGTFE---IPVGPVHAG 199 Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 EPGHFR GE ++ D +LFY H+G+EKL E + E + +RVCG+C +H++ Sbjct: 200 IIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGLKIVERVCGVCAVSHAL 258 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREK 312 AY +VE G+EVP+ R++L E+ERL++H+ ++G C VGF G + + +E+ Sbjct: 259 AYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVGFALGNVNALQNKEQ 318 Query: 313 SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNME 372 + L G R G GGV++ E+R + + E+ D E + ++ Sbjct: 319 LQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQDFEEWLPLIQEHDGFR 378 Query: 373 QRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 QR G+L +Q I++D R H + Y + GDV+SR Sbjct: 379 QRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEELKMEPQVEQEGDVWSR 438 Query: 417 VMVRVKETFDSLAML------EFALDNMPDTPLLTEG---FSYKPHAFALGFVEAPRGED 467 +MVRV+E S A+L +F D + G FS +P++FA G E+PRG D Sbjct: 439 LMVRVREVKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQPYSFAWGCAESPRGTD 498 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 V W ML D K++R R R+A+YANW + ++GN V D PLI S + CYSC DR Sbjct: 499 VIWLMLDDEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLINKSFELCYSCCDR 554 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 162/533 (30%), Positives = 267/533 (50%), Gaps = 30/533 (5%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 AIL +K +L+ ++ + + + + +Y + L LF ND + Sbjct: 5 AILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCINVYKNIECVLVGLFANDTTPI 64 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + VYY ++ + + L + S + S+ VPAA EREI DMYG++ Sbjct: 65 DNKLTVYYTFAVRSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREIHDMYGIVFEE 124 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 LPD R LV ++P D+HPLR++ P + E EG + +PVGP+H Sbjct: 125 LPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRELEFSTITGEGVFE---VPVGPVHA 181 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 EPGHFR V GE I++ + +L+YVHRG+EKL E + Y +V S+R+ G F +S Sbjct: 182 GIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSERISGDETFTNS 240 Query: 252 VAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM----QF 306 +A+ ++E GI +P+RA R + E+ER+ HL ++ C DT ++ QF Sbjct: 241 LAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLC----VDTAYIFPSGQF 296 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 +R + E L GSR N GG+RRD ++ L+ + ++ + E V ++ Sbjct: 297 AMMRRWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAIIK 356 Query: 367 ATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNIPKTLFTFTG 410 R + GIL+ IA DL R + PYA Y + + + Sbjct: 357 NNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHSN 416 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDT-PLLTEGFSYKPHAFALGFVEAPRGEDVH 469 DV R+ V+++E +S+ +++ L+ MP+ P+ + KP+++A G E+PRGE++H Sbjct: 417 CDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTESPRGENLH 476 Query: 470 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + M G+N +FR++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 477 FVMTGENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 259 bits (662), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/453 (34%), Positives = 248/453 (54%), Gaps = 24/453 (5%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP-LRKD----AMDY 158 PS+ VP A + E+E+RD++G+ ++RR +LP+ +P D P L KD ++ Sbjct: 70 LPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPLLKDVDPASVKA 129 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 + PT + + ++ V+PVGP H EP +F L VDGE+IV A R+ +V Sbjct: 130 LVAEAPTCQVDAVGLHAPLSPESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFV 189 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG+EK AE+R + ++ FL +R+CGIC +H+ + +VE L +EVP+RA +R+++ Sbjct: 190 HRGIEKAAESRSFFRDI-FLVERICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVA 248 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ER+HSH L LGL ++ GF+T FM + +RE M + E + G+R IGGVRRD Sbjct: 249 ELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTIGGVRRD 308 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------- 387 + + + V R + L+E L + + RT+GIG AR Sbjct: 309 VPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDARKYCAVGPVRRA 368 Query: 388 -----DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD-T 441 D+R PY Y + + T GDV++ + VRVKE +S ++++ ++ MP Sbjct: 369 AGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQLVEKMPSGN 428 Query: 442 PLLTEGF-SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 P+ + F P A +EAPRGE ++ + +R + R T AN + +L Sbjct: 429 PVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLANIQLAAKILE 488 Query: 501 GNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 G T+SD P+++ S+DPC+SC DRVT++D+ ++ Sbjct: 489 GQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKR 521 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 253 bits (647), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/402 (35%), Positives = 225/402 (55%), Gaps = 36/402 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H +EP F + +DGE+I+ D +L Y RG+E +A R Y ++ +L +R+C Sbjct: 11 IPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIA-MRRNYIQLLYLVERIC 69 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H+ YT +VE GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVL 129 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV- 362 + RE+ M + E + G+R Y +N IGGVRRDI ++ + L +++ R +V V Sbjct: 130 HLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPKVE 189 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH---PYADYGNIPK 403 E+ L P +E R + G++ ++IA +D+R++ Y + G P Sbjct: 190 EIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGIKPI 249 Query: 404 TLFTFTG---GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS---------YK 451 T FTG GDVF R++VRV E + S+ ++E A D MP+ + T FS K Sbjct: 250 TPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKT--FSKDNVTLTKLKK 307 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKL-FRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 +G EAPRGE +H+ +W+ R T+ N + L G ++D P+ Sbjct: 308 AEGAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPVA 367 Query: 511 IGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 I S+DPC SCTDRV ++D + + + K++ + I++ + Sbjct: 368 IASIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEKTKE 409 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 206/388 (53%), Gaps = 22/388 (5%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 IP+GP H EP +F + V GE+IV RL Y HRG+EK E R Y + +L +R+ Sbjct: 5 TIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYLLERI 63 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC HS AY +VE G+ +P RA+ IRS++ E+ER+HSHLL LG++ H +GFDT Sbjct: 64 CGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTL 123 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 M +R RE M + L G+R YG+N +GGVRRDI EQ V + + Sbjct: 124 LMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYI 183 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 E+ P + R G+G L + A RD+R D PYA YG++ + Sbjct: 184 EVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLDFRVI 243 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T DV+ R +VRV E +S M+ L+ +P+ + + P A EAPRGE Sbjct: 244 TDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEAPRGE 303 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC DR Sbjct: 304 CFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCADRCLE 363 Query: 527 VDVRKRQSKTVPYKEIERYGID---RNR 551 + RQ + + E+ R G++ RNR Sbjct: 364 LLGEGRQ--LMEWSELRRRGVEWYRRNR 389 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 248/474 (52%), Gaps = 42/474 (8%) Query: 89 CWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDM 148 C +++ +D ++ SVT P A W ERE+ + G+ PD R L LP +W E M Sbjct: 28 CHTILRTFLDRENPVLKSVTTLTPQADWSEREMIEFLGVRAEEHPDPRHLWLPLNW-EQM 86 Query: 149 HPLRKDAMDYRLRPEPTTDSE---TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDG 205 H D +P+ S+ T P IP GP H E +F++ V+ Sbjct: 87 H---TDEAAPEKKPQSIQASDHITTMP--------VSTIPYGPYHPAFIESNYFKMAVED 135 Query: 206 EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE 265 E + AD +L + HR + KL E R Y ++ +L++RVCG+C H++++ +VEN + Sbjct: 136 EVVKKADLKLGFNHRSIIKLMERRDYYKDI-YLAERVCGLCNAHHALSFCLAVENIGQVT 194 Query: 266 VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRK 325 VP+RA IR+++ E+ER+ SHL+ +G+ VG+ T MQF R+RE EL+ G R Sbjct: 195 VPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQDSLELVSGQRV 254 Query: 326 TYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI 385 T+GL +GGVRRDI Q + + ++ V L + +L+ + R + +G+L + Sbjct: 255 THGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLYDEMLSNNVLIGRLKNVGVLPPEE 314 Query: 386 A----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLA 429 A D+R + PYA Y N+ + T G D +RV V+++E S++ Sbjct: 315 AVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIVTDNGCDSLARVEVKMREALVSIS 374 Query: 430 MLEFALDNMPDTP--LLTEGFSYKPHAFALGFVEAPRGEDV-HWSMLGDNQKLFRWRCRA 486 ++E L+ + P ++T+ P A ALG E PRGE + H + G N F R R Sbjct: 375 IVEQCLEKLSTVPPEIITK-LEELPCAEALGKTEPPRGELLYHVASNGTNTPEF-VRIRV 432 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL-----VDVRKRQSK 535 T+ ++ +L G+ V+D P I+GS+DPCYSCTDRVT+ + VR R+ K Sbjct: 433 PTFMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVTVHKDAKIVVRSREEK 486 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 131/388 (33%), Positives = 213/388 (54%), Gaps = 24/388 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IPVGP H + EP +F L VDGE I AD +L Y HRG+E+ ++ Y E +L +R+C Sbjct: 10 IPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSK-SYLENIYLLERIC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC AH+ ++ VE+ L ++VP+RA+ IR+++ E+ER+HSH+L LG++ H +GFDT + Sbjct: 69 GICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHEIGFDTLW 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +R RE + + E + G+R Y +N IGGVR+D+ EQR L+ + E+ + +E Sbjct: 129 QYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDELEERIDFYLE 188 Query: 364 MLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFT 407 + + R + +G + ++AR D+R D PYA Y + + T Sbjct: 189 TVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAYDEMDFDVIT 248 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL------LTEGFSYKPHAFALGFVE 461 T GD+ +R VR++E +S++++ A ++PD L + + P + E Sbjct: 249 DTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQIPEDDVVSRYE 308 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 APRGE +H+ R R T ANWP + LRG+ ++D P+++ +DPC SCT Sbjct: 309 APRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVVAGIDPCISCT 368 Query: 522 DRVTL-VDVRKRQSKTVPYKEIERYGID 548 R+ + D + +E+ YG++ Sbjct: 369 SRIGVETDGSHGGEDSFNLEELREYGME 396 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 237 bits (605), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 212/382 (55%), Gaps = 34/382 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP+H +EP F L +DGE+IV+ D +L Y RG++ +A R Y ++ +L++R+C Sbjct: 11 IPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAERIC 69 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H+ YT +VE A GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 70 GICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVL 129 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + RE+ M + E + G+R Y + IGGVRRDI ++ + L +++ R+ + ++ E Sbjct: 130 HLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQIEE 189 Query: 364 MLLATPNMEQRTQGIGILDRQIARD------------LRFDH-------PYADYGNIPKT 404 + L P +E R + ++ +++A + L+ D Y D G P Sbjct: 190 VFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKPVM 249 Query: 405 LFTFTG----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------LLTEGFSYKP 452 TG GDVF R VR+ E + SL MLE ALD MP+ +L Sbjct: 250 PQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKIMV 309 Query: 453 HAFALGFVEAPRGEDVHWSM-LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 +G EAPRGE VH+ + K RW+ R T+ N + + G+ V+D L + Sbjct: 310 DGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTFPNLFAVAKGVTGDQVADFVLAV 369 Query: 512 GSLDPCYSCTDRVTLV-DVRKR 532 S+DPC SCTDRV +V D +KR Sbjct: 370 ASIDPCLSCTDRVAVVQDGKKR 391 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 234 bits (598), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 208/378 (55%), Gaps = 37/378 (9%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GP+H+ EP L ++GE I DA R +HRG+E +A R +V +L++RVC Sbjct: 9 LPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QVIYLAERVC 67 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H++A+ +VE+A IEVP RA IRS++LE+ER+HSH+L G++C+ +GFD+ F Sbjct: 68 GICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACYTIGFDSAF 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +REK M + E L G+R Y + +GGVR D+ + ++ R + + E Sbjct: 128 HLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYRNEFASFYE 187 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI---PKT 404 + P ++ R + +G+L + A D+R+ PY Y +I P Sbjct: 188 AAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYCDIHVEPVV 247 Query: 405 LFTFTG---GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-------GFSYKPHA 454 +TG GDV+ R +VRV E SL +LE ++ +P+ + E K Sbjct: 248 PQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLLTVLKKAEG 307 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFR-WRCRAATYAN---WPVLRYMLRGNTVSDAPLI 510 G +EAPRG+D H L Q+ + W+ RA TY+N WP+ M + N ++DAPLI Sbjct: 308 VGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPL---MFKDNELADAPLI 364 Query: 511 IGSLDPCYSCTDRVTLVD 528 I S+DPC SC +R+ L D Sbjct: 365 INSIDPCISCMERMVLSD 382 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 233 bits (593), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 157/470 (33%), Positives = 236/470 (50%), Gaps = 36/470 (7%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 Y + Y S G+ ++ +AL + ++ S+ P+A W ERE RDMYG+ G D Sbjct: 70 YILRYVFSHAGS--ILVLSRAL---NRKQATSIATIFPSATWPERECRDMYGIKFEGAFD 124 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTD-SETYPFINEGNSDARVIPVGPLHITS 193 RRLVL + P +PL K + + + T +E YPF +PVGP+H Sbjct: 125 TRRLVLHETCPAGFYPLEKSVKNAPVATKKTVPPAEEYPFRTVSGDGVYQVPVGPVHAGI 184 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 EPGHFR V GE + + + RLFY HRG+EKLAE + V +++ V G A++ Sbjct: 185 IEPGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPAACVR-VAEAVSGDESAANATG 243 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 ++E GI VP RA IR++L E ER+ SHL +L V F G F +RE+ Sbjct: 244 LCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFALGASHFAVLREEF 303 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDI----LKEQRLQTLKLVREMRADVSELVEMLLATP 369 E L GSR G+ L GG+ RDI L R + +E RA ++ ++L+TP Sbjct: 304 FREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRAGLA----IVLSTP 359 Query: 370 NMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFTFTGGDV 413 ++ R GI+ + + RD+R D PY Y GDV Sbjct: 360 SVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPVPHPLNDGDV 419 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-EGFSYKPHAFALGFVEAPRGEDVHWSM 472 +R V+ E DSL+++E + MP+ P+++ +G AL VE PRGE++ W Sbjct: 420 LARFTVKAAEVLDSLSLIEKVIAGMPEGPVISADGVG---DGAALALVEGPRGENLCWVE 476 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + ++FR++ R A+Y NW + + GN ++D P+I SL+ Y+ TD Sbjct: 477 IREG-RVFRYKVRTASYCNWLAIEHAAPGNIIADFPVINKSLNLSYAGTD 525 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 229 bits (583), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 204/374 (54%), Gaps = 31/374 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GP+H EP +F ++GE I D+ HRG+E + R ++ L DR+C Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMG-MRRNPVQILHLCDRIC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GICG H++ + +VE IEVP RA+ +R+I+ E ER+ SH+L G++ H +GFDT F Sbjct: 69 GICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLF 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +++RE+S+ + E + G+R YG+ ++GG RRDI + + + ++ + ++V Sbjct: 129 YLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKMVN 188 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGN------I 401 + L + R + GIL ++ +A D+R D PYA YG+ + Sbjct: 189 LFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDIVL 248 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY-------KPHA 454 P + GDV+ R++VR+ E S+ ++ + MP+ P+L E K Sbjct: 249 PDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKLLMNLKKASG 308 Query: 455 FALGFVEAPRGEDVHW-SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 A VEAPRGED+H+ M G + W+ +A+TY+N +L+G ++D P+I+ S Sbjct: 309 EAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQIADIPIIVAS 368 Query: 514 LDPCYSCTDRVTLV 527 +DPC SCTDRV +V Sbjct: 369 IDPCMSCTDRVAVV 382 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 228 bits (580), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 133/402 (33%), Positives = 210/402 (52%), Gaps = 34/402 (8%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A IP+GP+H EP V+GE+IV D + + HRG+E + R + +LS+ Sbjct: 5 AYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTLYLSE 63 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC +H A+ + E ALGIE P RA IR I+ E+ER+HSH+L LG+ H +GFD Sbjct: 64 RICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEMGFD 123 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK-LVREMRADVS 359 + ++ REK + + ELL G+R Y + +IGGVRRD LKE ++ +K + Sbjct: 124 SLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRD-LKESHIKAIKDAITYYWKFTE 182 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI-- 401 ++ E++L+ P + RT+G+ L +++A D+R D PY Y +I Sbjct: 183 QMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADIDV 242 Query: 402 ----PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-------EGFSY 450 P+ + GD + MVR+ E SL ++E+ +DN+P+ +L Sbjct: 243 RAVVPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAKIR 302 Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 + A+G EAPRGE VH+ W+ A +Y N +L G V+D P++ Sbjct: 303 RTKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADIPIV 362 Query: 511 IGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 + +DPC C DRV L ++ + K + Y+ I + +++ R Sbjct: 363 VAYIDPCMCCNDRVAL--LKTPEGKVLGYEYIHKKAVEKTRK 402 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 154/518 (29%), Positives = 254/518 (49%), Gaps = 27/518 (5%) Query: 25 VLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGH---YAVYYAL 81 + D T ++ I L V QYL+ D L + D+ + + Y Sbjct: 13 ITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRFSDDRCFTIRYVY 72 Query: 82 SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVL- 140 S +IV + F S+ +PA W EREIRDM+GL+P+ PD R LVL Sbjct: 73 SYHKKNVFFIVENKV----KERFNSLANIIPALNWYEREIRDMFGLVPLNHPDPRPLVLF 128 Query: 141 PDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFR 200 P+++P D+HPLRKD D + RPE + + Y + I VGP+H EPGHFR Sbjct: 129 PENFPSDLHPLRKD-FDIKTRPEFKSYGK-YEYKEVEGEGVFNILVGPIHAGIIEPGHFR 186 Query: 201 LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVEN 260 + GE I+ + R F+ HRG+EKLAE + EV + +V G +AH++AY ++E Sbjct: 187 FSLAGEHILQLEIRHFWKHRGVEKLAEGKTA-EEVLEIVPKVSGDHSYAHTLAYVQAIEK 245 Query: 261 ALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELL 320 E+P+RA IR + E+ERL +L ++ V + G F ++E+ M + + L Sbjct: 246 LSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMFILKEEVMRLNKAL 305 Query: 321 IGSRKTYGLNLIGGVRRDILKEQR----------LQTLKLVREMRADVSELVEMLLATPN 370 G+R + IGGV D+ +E+ + +++ D + +++ T Sbjct: 306 TGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFDSASILDRFETTGR 365 Query: 371 MEQRT----QGIGILDR--QIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKET 424 + T IG R + D+R +HPY Y + T TF GD F+R+ R+ + Sbjct: 366 ILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGDCFARLKCRLSDI 425 Query: 425 FDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 DS+++++ L ++PD + T+ + + LG+ E RG +++ K+ R + Sbjct: 426 EDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFVKTDKEGKIDRLKI 485 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 486 RDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 208/382 (54%), Gaps = 35/382 (9%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP+H +EP F + +DGE+IV+ D +L Y RG++ + R Y ++ +L++R+C Sbjct: 10 IPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIG-MRRNYVQIMYLAERMC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H+ Y +VE GIEVP+RA IR I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVL 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + RE+ M + E + G+R Y + IGGVRRDI ++Q+ L +++ R + ++ + Sbjct: 129 HLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIED 188 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHP-------------------YADYGNIPKT 404 + L +E R + + ++ +++A ++ P Y D G P T Sbjct: 189 VFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVT 248 Query: 405 LFTFTG----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------LLTEGFSYKP 452 TG GDV+ R+ VR+ E + SL +LE ALD MP+ +L Sbjct: 249 PEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLG 308 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQK--LFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 +G EAPRGE VH+ + G + RW+ R T+ N + L GN ++D + Sbjct: 309 DGEGIGRYEAPRGELVHY-VRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLVVA 367 Query: 511 IGSLDPCYSCTDRVTLVDVRKR 532 I S+DPC SCTDRV +V K+ Sbjct: 368 IASIDPCLSCTDRVAIVKEGKK 389 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 194/358 (54%), Gaps = 22/358 (6%) Query: 185 PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 P+GP H +E + L ++GE +VDA+ ++ ++HR +EK A R ++ L +R CG Sbjct: 6 PLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLG-LVERTCG 64 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 IC F HS AY +VE A G+EVP+RA IR + E+ER+HSHL+ LG H +GFDT FM Sbjct: 65 ICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFM 124 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS-ELVE 363 + RE M M ELL G+R Y +N +GGVRRD+ E +K E D+ +L + Sbjct: 125 FTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDV-DESISSQIKAALETLEDLGLKLKD 183 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 ++ RT+ +GI+ R+ I DLR PYA Y + L Sbjct: 184 TWSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLVV 243 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG--FSYKPHAFALGFVEAPRG 465 GDV+SR VRV E +S+ ++ LD MP + +P+ +G VEAPRG Sbjct: 244 LDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPND-VIGRVEAPRG 302 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 E + + K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 303 ELAYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 198/356 (55%), Gaps = 17/356 (4%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +IP GP H EP H +L V+ E IV+A L YVHRG+E LA R YN++ ++ +RV Sbjct: 5 IIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYIVERV 63 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC H++ Y +E + +EVP RA +R I E+ R+HSHLL LGL GF++ Sbjct: 64 CGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFGFESL 123 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FMQF+++RE+ M + E G+R +N++GGVRRD+ K Q+ L + ++ ++ +L+ Sbjct: 124 FMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELRQLM 183 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFT 407 + +L +++RT G+G+L + A L P YA + + T Sbjct: 184 KTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQLGYAAFDELDFEPVT 243 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 GD ++R VR ET S+ ++ A+ +PD+ L + KP + VE PRGE Sbjct: 244 SPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSELAAK-VPGKPTGEVVCRVEQPRGEL 302 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+R Sbjct: 303 LYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTER 358 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 188/357 (52%), Gaps = 18/357 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IPVGPLH+ +EP +FR+ VDGE++V D +VHRG+E LA R Y + L++RVC Sbjct: 6 IPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-LTERVC 64 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 +C +H Y ++E+ G+ VP RA +R I E +R+ SH+ N+ + H VGFD+ F Sbjct: 65 SLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLF 124 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV-SELV 362 M RE E + G+R IGGV+ D+ K+ R + + ++ + E++ Sbjct: 125 MHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEII 184 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTLF 406 + P++ RT+GIG+L +AR D+R PYA Y + + Sbjct: 185 PLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMA 244 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 GDV+SR MVR +E S+ ++ L +MPD P P A+ EAPRGE Sbjct: 245 LGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEAPRGE 304 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++ + R + R TY NW L M+ G +SD PLI+ S+DPC SCT+R Sbjct: 305 LIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTER 361 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/494 (30%), Positives = 241/494 (48%), Gaps = 28/494 (5%) Query: 78 YYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRR 137 Y+ M+ + +++ +D ++ S+TP A W ERE+ + G+ G P+ Sbjct: 43 YFCFDMKEPSE-HTILRTYLDRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTH 101 Query: 138 LVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPG 197 L LP +W +DM+ + D+ T P N IP GP H E Sbjct: 102 LWLPLNW-DDMYLNGRPEADHETERINAAPPATTPRDNIVTLPVTAIPYGPYHPAFIESN 160 Query: 198 HFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNS 257 ++ V+ E + D +L + HR + KL E R Y ++ FL++R+CG C H++++ S Sbjct: 161 FLKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDI-FLAERICGFCNSHHALSFARS 219 Query: 258 VENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMA 317 VE+ I++P +A R++L E+ER+ SHLL +GL GF T M RVRE+ Sbjct: 220 VEDIASIDIPPKAKLARTLLCEMERIQSHLLAVGLIGDLTGFRTMLMHSLRVREEMQDSL 279 Query: 318 ELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQG 377 E++ G R T+GL IGG+RRDI Q L +R M+ V E + L+ + R + Sbjct: 280 EVVSGQRVTHGLITIGGIRRDITPAQADFILNKLRIMKKSVPEFFDQALSNDVLVGRLEN 339 Query: 378 IGILDRQ----------IAR------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRV 421 +G+L + AR D+R + PY Y ++ + T GGD +R+ V++ Sbjct: 340 VGVLSLENSVKLGAVGPTARGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKM 399 Query: 422 KETFDSLAMLEFALDNMPDTPL-LTEGFSYKPHAFALGFVEAPRGEDV-HWSMLGDNQKL 479 +E S+ + E + + P L + P A+ E PRGE + H + G N Sbjct: 400 REVLMSMHIAEQCCEKIKTAPAGLATKVNELPCGEAISKSEPPRGELLYHVASNGTNTPD 459 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPY 539 F R R T+ ++ +++G V D P IIGS+DPC+SCTDRV ++ K K+V Sbjct: 460 F-VRIRVPTFLTAHIMLRLIQGGWVGDVPAIIGSIDPCFSCTDRVAII---KNNEKSVVD 515 Query: 540 KEIERYGIDRNRSP 553 R +D R+P Sbjct: 516 M---RTLVDHKRTP 526 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 221 bits (564), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/400 (33%), Positives = 207/400 (51%), Gaps = 35/400 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GP+H EP V+GE+IV D + + HRG+E + R + +LS+R+C Sbjct: 8 VPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTLYLSERIC 66 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC +H A+ E ALGIE P RA IR+I+ E+ER+HSH+L LG+ H +GFD+ Sbjct: 67 GICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIGFDSLL 126 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE-LV 362 ++ REK + + E + G+R Y + +IGGVRRD LKE ++ LK + + +E + Sbjct: 127 FWTWKGREKVLDILEAITGNRINYSMYMIGGVRRD-LKESHIRVLKDMITYYWEFTEHMK 185 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI----- 401 E+ L+ P + RT+G+ + + +A D+R D PY Y +I Sbjct: 186 EVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADIDVKAV 245 Query: 402 -PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-------EGFSYKPH 453 P+ + GD + MVR+ E SL ++E+ +DN+P+ +L K Sbjct: 246 VPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKIKKTE 305 Query: 454 AFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 +G EAPRGE VH+ G W+ A +Y N Y L G V+D P+++ Sbjct: 306 GEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAEVADIPVVVA 365 Query: 513 SLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 +DPC C DRV + V+ K + Y + R +++ R+ Sbjct: 366 YIDPCMCCNDRVAV--VKDSTGKILDYSILHRKAVEKTRA 403 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 218 bits (554), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 192/356 (53%), Gaps = 17/356 (4%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +IP+GP H EP HF L + E+++DA + YVHRG+E+L E R + + ++DR+ Sbjct: 6 IIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKR-DFIDFAHVADRI 64 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CG+C F HS+ Y +VE + IEVPQRA +RSI E+ R+HSH+ LG + GF++ Sbjct: 65 CGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGFESL 124 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FMQ R+RE + + E G R G+ +GGVRRDI + + + ++ + EL Sbjct: 125 FMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALEELS 184 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFT 407 + L +++ R G+G L R+ A L P YA Y + Sbjct: 185 NVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRALGYAAYKYLEVEPVV 244 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 + GD +R VR++E F ++ ++ A+ +P P+ + + P VE PRGE Sbjct: 245 ESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVK-VTGTPDGEYYSRVEQPRGEV 303 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +H+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT+R Sbjct: 304 IHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCTER 359 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/406 (32%), Positives = 203/406 (50%), Gaps = 66/406 (16%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++P GP H EP H +L ++ E +++A L YVHRG+E+L E R +N++ + +RV Sbjct: 5 ILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQIVERV 63 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC H++ Y VE +G+EVP+RA +R+I E+ R+HSHLL LGL GF++ Sbjct: 64 CGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFGFESL 123 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FMQF+RVRE+ M + E G+R +N+IGGVRRD+ EQ L + + ++ +L Sbjct: 124 FMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEIKQLQ 183 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFT 407 +L +++RT GIG+L ++ A L P YA + + Sbjct: 184 TTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQTGYAAFDELGFEPVV 243 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--------------DTP----------- 442 GGD ++R VR +ET S+ ++ A+ MP DTP Sbjct: 244 EYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERRDI 303 Query: 443 -------------------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQ 477 L+ KP A+ VE PRGE +++ ++ Sbjct: 304 MQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNGSK 363 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 364 NMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/359 (35%), Positives = 195/359 (54%), Gaps = 23/359 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++RVC Sbjct: 5 VQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAERVC 62 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC HS + +VE+ + +E+P+RA IR+I+LE+ERLHSHLL +GL+ +GF+ F Sbjct: 63 GICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLF 122 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M FR RE + + E G+R +G+NL+GGV R+I E + + + +L + Sbjct: 123 MLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLED 182 Query: 364 MLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTLFT 407 M++ + ++ R +G+GIL +Q IAR D+R D PY YG + Sbjct: 183 MIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHVV 242 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEF---ALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 G DV++R +VRV+E F S+ ++ L+ +PD L P VE PR Sbjct: 243 EEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKS--KTMPDGDGFARVEPPR 300 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 301 GELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 202/386 (52%), Gaps = 21/386 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IPVGP H EP + + DGE+IV+ + Y HRG+EKL E Y ++ F+ RVC Sbjct: 15 IPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDI-FIVARVC 73 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H+ Y ++E L + +RA +R + +E ER+HSH+L + +GFD+ F Sbjct: 74 GICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLF 133 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M RE M E++ G+R +IGGVRRDI ++ + LK++ ++ + + Sbjct: 134 MNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKK 193 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 + + + +R +G++ R + D+R Y YG+IP + T Sbjct: 194 LFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMVT 253 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD--TPLLTEGFSYK--PHAFALGFVEAP 463 GD ++R++VR E +SL M ++ L+++P+ P+ E + P A VEAP Sbjct: 254 RNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEAP 313 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ M K +R + + ++ N Y+ G+T++D P+I+ SLDPC SC +R Sbjct: 314 RGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISCMER 373 Query: 524 VTLVDVRKRQSKTVPYKEIERYGIDR 549 VT++D+ + VP KE+ G R Sbjct: 374 VTVIDLENNTRRKVPIKELAGGGRKR 399 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 212 bits (540), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 183/357 (51%), Gaps = 17/357 (4%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++P G H+ EP F E I D + YVHRG+EK A TR Y ++ +L RV Sbjct: 6 IVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVARV 65 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CG+C H+ AYT+ +E LGIE ++ +R +++E++R+HSH+L G VG++ Sbjct: 66 CGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYENL 125 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FMQ FR RE M + E + G+R Y +IGGV RD KE + + ++A+ +L+ Sbjct: 126 FMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTEKLI 185 Query: 363 EMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLF 406 E +T+G+G + +++A D R ++ Y + + L Sbjct: 186 EFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVGYKLQ 245 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T T GDV++R MVR E +S+ M LD +P+ + +P VEAPRGE Sbjct: 246 TRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVK-VKGRPDGETFVRVEAPRGE 304 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ + L R R R TYAN PVL+ + G SDA I+ S DPC SCT R Sbjct: 305 CFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSCTAR 361 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 211 bits (536), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 205/384 (53%), Gaps = 20/384 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +PVGP H +E +F++ +DGE++VD + ++HRG+EK++E +++ F+ +R+C Sbjct: 7 LPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEEST-FDQSIFVVERIC 65 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC +H A N+ E+ IEVP +A IRS++ E+ER+HSHLL LGL+ HF+G+DT + Sbjct: 66 GICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIGYDTLW 125 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M ++ RE + + E++ G+R YG IGGVRRD + + + ++ + + Sbjct: 126 MWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKLTMVAK 185 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 + P + R G+G+L ++ +A D+R D PYA Y + + Sbjct: 186 AVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLDFGVVV 245 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT--PLLTEGFSYKPHAFALGFVEAPRG 465 GD+F++ +VR+ E F+S+ M+ ++ + P+ + P +G EAPRG Sbjct: 246 REEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPIYND-VKEIPAGEGIGRHEAPRG 304 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVT 525 E H+ + + R + RA +Y N P + G ++D + + S+DPCY CT+R Sbjct: 305 EVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCCTERSV 364 Query: 526 LVDVRKRQSKTVPYKEIERYGIDR 549 + K T ++ + DR Sbjct: 365 RLQTEKGMEITSNLLKLSQDKTDR 388 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 209 bits (531), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 192/360 (53%), Gaps = 24/360 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+RVC Sbjct: 5 IQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSERVC 62 Query: 244 GICGFAHSVAYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 IC HS + VE + G+E+P+RA IR+I+LE+ERLHSH L +GL+ +GF+ Sbjct: 63 AICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFENM 122 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM FR RE+ + + E G+R +G+N++GGV R+I E + L ++ E+ Sbjct: 123 FMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHEIE 182 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPK----------------TLF 406 +++++ ++QR QG+G++ ++A++L P A N+P T Sbjct: 183 RIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVTPI 242 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEF---ALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 GD ++R +VRV+E F S+ ++ LD PD L P + VEAP Sbjct: 243 VEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDE--LFAKSKAMPEGENIARVEAP 300 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ +++L R + R +TY N + +++G+ ++D LI + DPC C DR Sbjct: 301 RGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCFDR 360 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 207 bits (528), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 144/438 (32%), Positives = 215/438 (49%), Gaps = 29/438 (6%) Query: 106 SVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR-PEP 164 S+ P+A + EREIRD YG D+RRL L + +P + HPL + L P Sbjct: 96 SIAAIFPSACYFEREIRDGYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAG 155 Query: 165 TTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEK 224 + YPF + VGP+H EPGHFR GE I++ + RLFY HRG+EK Sbjct: 156 VENEALYPFKKISGEGVYEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEK 215 Query: 225 LAETRMGYNEVTF---LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVE 281 LA MG ++ F +++ + G A++ AY+++VE+ P+RA +R ILLE+E Sbjct: 216 LA---MG-KDIDFGLKIAEGISGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEME 271 Query: 282 RLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK 341 RL+SHL +L VG+ G +RE+ M + L GSR G+ GG+ +DI Sbjct: 272 RLYSHLADLSGMLTDVGYPVGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPG 331 Query: 342 EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI---------------- 385 E + + SE VE LA ++ R + GI++ ++ Sbjct: 332 ELITELADYLYAFEGRFSEQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGE 391 Query: 386 ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT 445 A D R + PY Y + L GDV +R VR+ E SL ++ L Sbjct: 392 AIDTRLNQPYGFYPELSFKLPVLPEGDVMARFRVRLSEVQTSLGLI---LKTAAKLSAGE 448 Query: 446 EGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 KP + ++L VE+PRG+ +HW L D K+ R++ R A+Y NW + + + G+ + Sbjct: 449 YAIPLKPVNGYSLVLVESPRGQSLHWLWLRDG-KIERYKVRTASYCNWQAIEHAVLGDII 507 Query: 505 SDAPLIIGSLDPCYSCTD 522 D PLI SL+ Y+ TD Sbjct: 508 PDFPLINKSLNLSYAGTD 525 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 204 bits (520), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 139/427 (32%), Positives = 209/427 (48%), Gaps = 34/427 (7%) Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 ERE+ D+YG+ PVG P RRLV WP+D HP+R+DA D P P +PF+ Sbjct: 83 EREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDAGD----PPPFDAVGRFPFVTVE 138 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR--MGYNEV 235 IPVGP+H EPGHFR V GE I+ RL++VHRG+EKL E R +G E Sbjct: 139 GPGVYEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWFVHRGVEKLFEGRNALGAREA 198 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L++R+ G AHS+A+ +VE+ALG++VP+ H +R++L+E+ERL++H+ +LG + Sbjct: 199 VELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALAN 258 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 VGF +RE+ + + + G R GGV +L+E L + + Sbjct: 259 DVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGV---VLQE--LPDPAELHAVA 313 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 A+V+E+ E+ L + R +L + IA D R DHP A+ Sbjct: 314 AEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYVARASGIATDARLDHPTAE-- 371 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD----TPLLTEGFSYKPHAF 455 +P T GGDV +R +R E S+A+ ++N P + Sbjct: 372 -LPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHHGRTRFAPPPAANGARSAVTS 430 Query: 456 ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 +G VE RG +H + ++ R + ++ NWP L + V D PL S + Sbjct: 431 GVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPALPVAMADTIVPDFPLANKSFN 490 Query: 516 PCYSCTD 522 Y+ D Sbjct: 491 LSYAGND 497 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 202 bits (515), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/449 (31%), Positives = 210/449 (46%), Gaps = 17/449 (3%) Query: 90 WIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMH 149 +++++ ++ PS TP P A ER RD+ GL +G PD RR V W E Sbjct: 79 YLLLRTVLPPGRTGLPSHTPHFPGAARPERHTRDLLGLKFIGHPDDRRWVRHQAWGEREF 138 Query: 150 PLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 PLR D P T +Y F + + IPVGP+H EPGHFR GE ++ Sbjct: 139 PLRPDFPLAGQPPAVTAPDRSYGFASAHGPEVNEIPVGPVHAGIIEPGHFRFLALGETVL 198 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 + + RL YVH+G+EKLA R + L+ RV G H+ A ++E+A G+ P+R Sbjct: 199 NLEERLGYVHKGIEKLAVGR-DPEGLARLAGRVSGDTTVGHAWAACQAMEHAAGVAPPER 257 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 A +R+I +E ER+ +HL ++G C+ F G QF R+RE + G R Sbjct: 258 ALWLRAIFIERERVANHLNDIGAICNDTAFAFGHSQFSRLRELWLRDNLRWFGHRLLMDR 317 Query: 330 NLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI---- 385 + GGV D+ E + +R+++ EL +L + + R G G+L +I Sbjct: 318 IVPGGVAVDLPAEATSAMPAAMAALRSELEELKPILDESTIFQDRVVGAGVLSERIVREL 377 Query: 386 ------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 RD+R P+A Y + T GDV +R+ VR +E SL +L+ Sbjct: 378 GCLGYVARACGIGRDVRERAPHAPYDRLGVKAVTRGDGDVAARLYVRYEELLASLDILDQ 437 Query: 434 ALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 L + PL + + +A LG VE RGE + + R+ R + NWP Sbjct: 438 CLRRIEPGPLRADWRTPPANAEGLGLVEGWRGEIATYVRFDGAGSIVRFFPRDPSVFNWP 497 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 L ++ GN V D PL S++ YS D Sbjct: 498 ALEKLILGNIVPDFPLCNKSVNGSYSGHD 526 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/360 (33%), Positives = 186/360 (51%), Gaps = 18/360 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A VIP GP H EP H L V E++++ ++ ++HRG+EKL E + ++ ++++ Sbjct: 4 ATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIYVAE 62 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC F HS+ Y +VE +G+EVP+RA +R IL E+ R+HSHLL LGL+ GF+ Sbjct: 63 RICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGFE 122 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 FM +R+RE+ + + E G R IGGV RDI E+ Q + MR++ +E Sbjct: 123 ALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYAE 182 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIP-----------KTLFTFT 409 L+ L ++ R +G L + A DL P+A N+ L F Sbjct: 183 LMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELENFQ 242 Query: 410 -----GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH-AFALGFVEAP 463 GD ++RV VR KE S+ +++ + +P + P A A +E P Sbjct: 243 PILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAANVLEQP 302 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE +++ ++ L R R R T N L G ++D P I+ ++DPC SCT+R Sbjct: 303 RGECYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPCISCTER 362 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 159/505 (31%), Positives = 227/505 (44%), Gaps = 66/505 (13%) Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 VY+ LS E A ++ VKA + D E PS+T PAA W ERE DM+G+ G PD R Sbjct: 298 VYHLLSFERA--GYLRVKAPLRNDRAEVPSITGLWPAANWYEREAFDMFGVRFAGHPDLR 355 Query: 137 RLVLPDDWPEDMHPLRKD----AMDYRLRPEPTTDSETYPFINEG-----------NSDA 181 R+++P+ W HPLRK A D P T D+ T EG N Sbjct: 356 RILMPEGW--QGHPLRKSHPSRATDM---PPFTRDTATTMVPPEGSHFFSNRAPVDNQSL 410 Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 ++ +GP H + L + GE+IVD D + Y HRG EK+AE R +N+ +DR Sbjct: 411 SILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQHWNQYIPYTDR 469 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + + G +++AY SVE G+EVP RA IR +L E+ R+ SHL+ LG H VG T Sbjct: 470 IDYLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAHDVGAMT 529 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 F REK + EL+ G R IGGV D+ R+ A + E Sbjct: 530 PVFYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTRDFEARIDEF 589 Query: 362 VEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTL 405 +L P RT+GIG + RQ +A DLR PY Y + Sbjct: 590 DRLLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYGGYDEFDFDV 649 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY--------------- 450 T GGD F+R +VR+ E SL ++ A + MP +++ + Y Sbjct: 650 VTAGGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKREDGLQDIESL 709 Query: 451 ------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 P +E+ +GE ++++ +R R R ++ + L + Sbjct: 710 IHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPSFPHLQALPQL 769 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 RG V+D I+GSLD + DR Sbjct: 770 SRGRLVADVITILGSLDYVLADLDR 794 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 135/469 (28%), Positives = 226/469 (48%), Gaps = 29/469 (6%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 +A+Y ++ E +++ + A++ E PS++ AA ER ++DM+G+ +PD Sbjct: 71 HAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYIAACRMERHMQDMFGIHITDIPD 130 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET-YPFINEGNSDARVIPVGPLHITS 193 R + + WP + +PLR +D+ RP ++ Y ++ G+ IPVGP+H Sbjct: 131 PRPWIKHEHWPREAYPLR---VDFDARPPLLAEAHGDYDYVRSGSEGVYEIPVGPVHAGI 187 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 EPGHFR GE I++ + RL YVH+G+E+ +++ E ++ R+ G AH+ A Sbjct: 188 IEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSA-EEGLKVASRISGDSTVAHAWA 246 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 + + E A I+VP+RA IR+IL E ER+ +H+ ++G C+ F Q R+RE Sbjct: 247 FAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLREDM 306 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT----P 369 + L G R + GGV D+ + + + L+RE ++ VE L A P Sbjct: 307 ARLHLELFGHRLLMNTLIPGGVLVDLGE----RAIGLLREQTLAIANEVEHLRAIYADHP 362 Query: 370 NMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNIPKTLFTFTGGDV 413 +++ R G G++ + A+D+ R + YA Y + + GDV Sbjct: 363 SIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYAPYDELEVNVPQGKLGDV 422 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 +RV VR +E +S ++ L+ MP+ P++ +P +E RGE W Sbjct: 423 ATRVWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVSGFAAIEGWRGEIAAWVRF 482 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G+ ++ R R + NW L +R V D PL S + YS D Sbjct: 483 GEGGQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNCSYSGND 531 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 192 bits (488), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 137/452 (30%), Positives = 208/452 (46%), Gaps = 38/452 (8%) Query: 87 EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPE 146 E C +V + A + +PSV P A+ ER +RD+YG IP G+PD+RR + WP Sbjct: 74 ENCRAIVSLSLKAGA--YPSVGLHHPPALRLERAMRDLYGAIPDGIPDERRWLDHGVWPG 131 Query: 147 DMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 H EP Y F+ + IPVGP+H EPGHFR +GE Sbjct: 132 REH-------------EPG-----YHFLPVEGNGLHQIPVGPVHAGIIEPGHFRFTANGE 173 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 + + RL YVH+G+E LA+ + L+ R+ G A+S A++ +VE ALG E+ Sbjct: 174 TVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAYSFAFSRAVEAALGWEI 232 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P RA +R ++ E+ERL H+ ++G C+ + +RE + L G R Sbjct: 233 PPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIREDILRTQAALFGHRMM 292 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD---- 382 + GGV RDI L L+ + +V +P+++ RT G GI+ Sbjct: 293 MDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPSIQNRTHGTGIVQLDFI 352 Query: 383 RQIAR------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 RQ A D R PY Y + + T DV +R+ +R++E +S + Sbjct: 353 RQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVDARIWIRIEEIAESAGI 412 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 + L + D P+ ++P A A VEA RG+ + D ++ R A++ Sbjct: 413 IRQLLAKLEDGPIHAAPPPFQPGAGA-ALVEAFRGDLFLAVRIEDESRIAHMHARDASWF 471 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 WP+L + GN V+D PL S + YS D Sbjct: 472 QWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 192 bits (487), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 137/445 (30%), Positives = 206/445 (46%), Gaps = 36/445 (8%) Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 D R F ++ P + ER I D++GL PVGL D+R + WP M PL M Sbjct: 75 CDDRRFLALGNVRPGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRM-PLAAQPM-- 131 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 P+ + + YPF+ IPVGP+H EPGHFR GE +V + RL Y Sbjct: 132 ----APSAEPDRYPFLQAVGDGLHQIPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQ 187 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 H+G+E L + ++ + RV G A+S+A+ +VE A G EVP RAH +R ++ Sbjct: 188 HKGIEGLLQG-APLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMA 246 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ER+ +H+ ++G C+ F +REK + ++L G R + GGV D Sbjct: 247 EMERVANHVFDIGAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLD 306 Query: 339 ILKEQRLQTLK-LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI------------ 385 L ++ ++ LK L+ + + ++ TP++ RT GI+ + Sbjct: 307 -LSDEGVEALKHLLYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGR 365 Query: 386 ----ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 D R Y Y + T+ T GDV +RV+VR E +SL ++ L MP Sbjct: 366 ASGRGHDARETPSYPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMP-- 423 Query: 442 PLLTEGFSYKP----HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 EG P +G E+ RGE V W LG + + R ++ WP+L Sbjct: 424 ----EGAVRVPLPEVAGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEA 479 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTD 522 + GN V+D PL S + YS D Sbjct: 480 AIEGNIVADFPLCNKSFNCSYSGHD 504 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/368 (32%), Positives = 191/368 (51%), Gaps = 21/368 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I +GP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++C Sbjct: 10 IAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKIC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H E IEVP+RA IR+I+ E+ERLHSH+L G + +GF+T Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR-RDILKEQRLQT-LKLVREMRADVSEL 361 + F +RE M + + G R Y +IGG+R R +KE ++ L+ + + ++ +L Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188 Query: 362 VEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYAD----------------YGNIPKTL 405 +E + P + R + +G+LD++ A+ L P A Y N Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEE 248 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFSYKPHAFALGFVEAP 463 F GDVFSR+ VR E F+S+ ++ L ++P D + + K + EA Sbjct: 249 IVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEAQ 308 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RG+ + L +N ++ + + R T N + +L G+ VSDA LII S DPC++CTDR Sbjct: 309 RGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTDR 368 Query: 524 VTLVDVRK 531 + +V K Sbjct: 369 MIVVKENK 376 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 150/464 (32%), Positives = 209/464 (45%), Gaps = 34/464 (7%) Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 VY AL+ V+++ V +S FPS+T P A ER +RD+YG IP GL D R Sbjct: 51 VYAALA---GPDGLFVLRSPVSKESGTFPSLTALFPLASRPERAVRDVYGWIPEGLSDTR 107 Query: 137 RLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEP 196 + DD H K+ PE D YPF+ IPVGP+H EP Sbjct: 108 PWIRQDD--HGGHGSGKERS-----PEGGRD---YPFVRVDGEGVHEIPVGPVHAGIIEP 157 Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 GHFR V GE+++ + RL Y H+G+ L R +VT LS R+ G A A+ Sbjct: 158 GHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRP-VGDVTRLSSRISGDSAVAFQWAWAQ 216 Query: 257 SVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTM 316 +VE A P+RA +R+ILLE ER+ +HL +LG + GF G +QF R++E + Sbjct: 217 AVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAGFAFGLVQFGRLKEDLLRT 276 Query: 317 AELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQ 376 + G R GGV D + + ++ ++ L + ++ R Sbjct: 277 NGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQEEIHVLKTIYDEHGGLQDRFA 336 Query: 377 GIGILDRQIAR----------------DLRFDHPYADYG--NIPKTLFTFTGGDVFSRVM 418 G G+LD +A DLR DHP Y +P L GDV +RV Sbjct: 337 GTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPYDIERVPVALAKR--GDVGARVQ 394 Query: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 VR +E SLA LE L + P P P A G++E RGE + W L + Sbjct: 395 VRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGFGWIEGFRGEVLAWVRLDRDGN 454 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + ++ WP L + GN V+D PLI S + YS D Sbjct: 455 VEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLSYSGHD 498 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 140/428 (32%), Positives = 204/428 (47%), Gaps = 34/428 (7%) Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET-YPFINE 176 EREIRD++G++P G P RLV WP HP+R+DA P P D + YPF Sbjct: 89 EREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDAGP----PPPFGDVDGPYPFRTV 144 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 IPVGP+H PGHFR V GE +++ RL++VHRG+EKL R V Sbjct: 145 EGPGVYEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGRAVAAGVE 204 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 L++RV G H++AY +VE+A G+ + A IR+ILLE+ERL++H+ ++G + Sbjct: 205 -LAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALAND 263 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 VG R+RE+ + + + + G R + G + ++ + L + + A Sbjct: 264 VGHGILNNHALRIRERLLRINDAVTGHRL-----MRGAIVVGGVRVRVLPDAGELAAVAA 318 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGN 400 D +E+V++ L + R G +L + +A D RFDHP Sbjct: 319 DCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVPGLVY 378 Query: 401 IPKTLFTF--TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-GFSYKPHA--- 454 P + T GDV SR +VR +E S+ M+ AL DT E G S A Sbjct: 379 DPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIA-ALAGQVDTTAPREVGGSTSSAAGVR 437 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 +G VE RG VH L + +L R R ++ NWP L + V D PL S Sbjct: 438 AGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPALPLAMADTIVPDFPLANKSF 497 Query: 515 DPCYSCTD 522 + Y+ D Sbjct: 498 NLSYAGND 505 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 179 bits (454), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 185/371 (49%), Gaps = 20/371 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H EP +L +DGE+ VDA+ + YVHRG+EK+ E + + + L++RVC Sbjct: 8 IPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGI-HLAERVC 66 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC + H++ + +E+ IE+P +A +R + E+ER+HSHL+ + + +T Sbjct: 67 GICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLA 126 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M VRE M + E++ G+R G N+IGGVRRDI +E + K + ++ ++E Sbjct: 127 MWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNIIE 186 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTF--------------- 408 + P + R++ IGIL R P +P++ + Sbjct: 187 VFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHSTYQELKFKPVWR 246 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 GD F+R+MVR +E +S+ ++ AL++ + + EAPRGE Sbjct: 247 EEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNEAPRGEVT 306 Query: 469 HWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN-TVSDAPLIIGSLDPCYSCTDRVTLV 527 + + D + R R T N +YML+ TV+DA S+DPC SCT+R Sbjct: 307 YRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVSCTERCI-- 364 Query: 528 DVRKRQSKTVP 538 V + K +P Sbjct: 365 -VAVKDGKEIP 374 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 178 bits (452), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 113/359 (31%), Positives = 184/359 (51%), Gaps = 19/359 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + I +GP + +EP +F+L VD +IV D + +VHRG+E L + + + L++ Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNL-ILTE 60 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+C +C H +Y ++E IEV +RA +R I EV+R+ S++ NL + H V Sbjct: 61 RLCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDY 120 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 RE + E + G+R IGGV+ ++ K++ L + ++ V + Sbjct: 121 ELMRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDK 180 Query: 361 LVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKT 404 L E + + ++T+GIG+L +Q I D+R PYA Y + Sbjct: 181 LFERFCNSEKI-KKTKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEVR 239 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 + + GDV+SR+ VR + +++ +L+ A++N+P P+ E + P A EAPR Sbjct: 240 VDLESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAPR 299 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE +++ QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 300 GELIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 146/494 (29%), Positives = 221/494 (44%), Gaps = 40/494 (8%) Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 G+ G VY+ S E+ I + + ++ E PSV+ AA + ERE+ D Sbjct: 42 GDAPNVTRGLGVVYHLESTVTGERIAIKT-STNNRETPEIPSVSDIWKAADFNEREVFDY 100 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG--NSDAR 182 YG++ +G PD RRL L +DW HP+RKD + P + ETY E N D Sbjct: 101 YGIVFIGHPDMRRLYLRNDWVG--HPMRKDNNPEKDNPLRMDNEETYDTTREIELNPDGT 158 Query: 183 --------------VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 228 V+ +GP H + FR+ ++GE I D Y+HRG+EK+ E+ Sbjct: 159 YQTQENVIFDDREYVVNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES 218 Query: 229 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 288 + Y + L+DR+ + + A +E A+GIEV +R IR+I+ E++R+ SHLL Sbjct: 219 -LTYPQTLALTDRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLL 277 Query: 289 NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 +G T F FR RE + M E G R N IGGV+ D+ + Sbjct: 278 FYSCLAMDLGALTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVK 337 Query: 349 KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFD 392 K + +R + E ++ QR +G+G+L R+ A D+R Sbjct: 338 KFIPYLRGIIHEYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKR 397 Query: 393 HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL--TEGFSY 450 PY Y + +T GD F+R MVR+ E +SL ++E +DN+P+ P+ + Sbjct: 398 MPYGVYDKVDFKEIVYTEGDSFARYMVRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIR 457 Query: 451 KPHAFALGFVEAPRGE-DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 P VE RGE V GD +R R+ + + RG ++D Sbjct: 458 VPEGSYYTAVEGSRGEFGVFLESHGDKTP-YRLHYRSTGLPLVSAVDTICRGAKIADLIA 516 Query: 510 IIGSLDPCYSCTDR 523 I G+LD DR Sbjct: 517 IGGTLDYVVPDIDR 530 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/423 (29%), Positives = 200/423 (47%), Gaps = 19/423 (4%) Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 ERE+ D++GL D R++V + WPED++PLRK + Y + E + Y Sbjct: 106 EREMCDLFGLKIKDGIDTRKIVKHEKWPEDVYPLRK-SFPYGAKLEEKNEILPYKCKEAF 164 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 A I VGP+H EPGHFR V GE I + + RL Y HRG+EK+ E + +++ Sbjct: 165 GDGAYQISVGPVHAGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNL 223 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 + +R+ A++ +Y VE L + PQ +R +LLE+ER+++ L ++ C + Sbjct: 224 VFERMACESSAAYAESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDI 283 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 GF +F E+ + E + GSR + + G+ D KE K + M+ Sbjct: 284 GFSYPAKRFGAFGEQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKR 343 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNI 401 + +++E+ L + + R + GI+ + A+ D+R PY YG + Sbjct: 344 MDKIIEITLDSVSFLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGIL 403 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG-FSYKPHAFALGFV 460 K T G VF R +++KE +D+ + +LD + L T+ F AL V Sbjct: 404 KKNNNTLEIGGVFERYKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAV 463 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E +GE + + +G + K R + + NW L Y + G V D PL S + YS Sbjct: 464 ETVKGELIVYGKVGKDNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSE 523 Query: 521 TDR 523 D+ Sbjct: 524 NDK 526 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 174 bits (442), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 139/483 (28%), Positives = 221/483 (45%), Gaps = 40/483 (8%) Query: 76 AVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQ 135 V Y L K + A D ++ P+V+ A ERE+ D +G+ +G PD Sbjct: 81 GVVYNLWSTTQNKRISLKTATTDRENPFLPTVSDLWNIANIYEREVFDFFGIKFLGHPDM 140 Query: 136 RRLVLPDDW----------PEDMHPLR------KDAMDYRLRPEPTTDSETYPFINEGNS 179 RR+ L +DW PE+ +PLR D RP+ + ++ E Sbjct: 141 RRIFLREDWNGYPMRKDDKPEEENPLRMDNEPLADVTTQYDRPDGSITTKENTIFTE--- 197 Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 D V+ +GP H ++ HFR+ ++GE+I D L Y+HRG+EKL E+ + Y + L+ Sbjct: 198 DDYVVNIGPQHPSTHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNES-LTYPQTLALT 256 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +R+ + + A +E A GIEV +R IR+I+ E +R+ SH+L C +G Sbjct: 257 ERLDYLGAMQNRHALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGA 316 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + F+ FR RE+ + + E G R N IGGV DI + + + MR ++ Sbjct: 317 TSAFLYGFRDREQILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQ 376 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPK 403 E ++ + R +G+G+L+++ + DLR PYA Y + Sbjct: 377 EYYDIFVNNVIAHNRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDF 436 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG--FSYKPHAFALGFVE 461 T+T GD F+R+MVR+KE +SL ++E +D +P+ P T+ P VE Sbjct: 437 QEITYTEGDSFARLMVRMKEIEESLKIIEQLIDGIPEGPFQTKTKPIIKIPAGTYYSAVE 496 Query: 462 APRGE-DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 RGE V GD R R+ + + R N ++D I G++D Sbjct: 497 GSRGEFGVLLESKGDKFPS-RLHYRSTGLPLVAAMDTICRDNFIADLMAIGGTVDYVVPD 555 Query: 521 TDR 523 DR Sbjct: 556 IDR 558 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 174 bits (441), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 116/359 (32%), Positives = 183/359 (50%), Gaps = 24/359 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I +G +H + EP RLFV+ E + DA+ + HRG+E++ E + + L+++VC Sbjct: 23 INMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEG-LPVEKANALTEKVC 81 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H E ALGIE+P+RA +R + E+ERLHSH+L LG + +T Sbjct: 82 GICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGHGSEVLCHETFA 141 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDI-LKEQR--LQTLKLVREMRADV 358 M+ F +RE M + ++ G+R YG++++GGV R D+ LKEQ+ L T+ + E AD Sbjct: 142 MRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVLDTMDYIDEKVADF 201 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYA--------------DYGNIPKT 404 + E +A P + R G G L ++ A DL P +Y Sbjct: 202 A---ERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTEMFEYEPFEFD 258 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 + T GGDV + +++R E F+S ++ + N+P P++T + ++E PR Sbjct: 259 IITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVDSPVYKSYIEVPR 318 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 G H L D K+ R + +N ++ G+ + DA L I S DPC++CTDR Sbjct: 319 GVCYHSYGLEDG-KVRHSIIRTPSMSNIGAMQESCIGHPIQDAQLAIVSCDPCFTCTDR 376 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 137/426 (32%), Positives = 204/426 (47%), Gaps = 39/426 (9%) Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPT-TDSETYPFINE 176 ERE+ D+YG+ PVG P RRLV WP D HP+R DA P P TD+ +PF+ Sbjct: 84 EREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAG-----PAPEFTDTGAFPFLAV 137 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 IPVGP+H EPGHFR V GE IV RL++VHRG+EKL R V Sbjct: 138 EGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVD 197 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 L++R+ G AH++A++ ++E+ALGIE+P H +R++++E+ERL++H +LG + Sbjct: 198 -LAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIVELERLYNHAADLGALAND 256 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR-RDILKEQRLQTLKLVREMR 355 VG+ R+RE + + G R G GGV R + L L + Sbjct: 257 VGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPDTDELAALAV----- 311 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYG 399 D++E+ + LA + R G +L +AR D R +HP Sbjct: 312 -DLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTI--- 367 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKP---HAFA 456 +P T GDV +R VR E S A+ + +++ T + + P + Sbjct: 368 VLPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES--HTGPIEYAATLHPVGAPSSG 425 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 +G VE RG VH + + ++ R + ++ NWP L + V D PL S + Sbjct: 426 IGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFPLANKSFNQ 485 Query: 517 CYSCTD 522 Y+ D Sbjct: 486 SYAGND 491 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 132/462 (28%), Positives = 214/462 (46%), Gaps = 30/462 (6%) Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 VY AL G K I + L + + FPSV P+A ER + D++GL G D R Sbjct: 87 VYLALLDRGGSK--ISLFGLQVPEGK-FPSVAVAYPSAARLERALYDLFGLQAQGSLDSR 143 Query: 137 RLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEP 196 + W +R D P + + Y F +PVGP+H EP Sbjct: 144 PWLDHGKWG-----VRFPMGDSY----PDGEEKLYSFFPARGESLHQVPVGPVHAGIIEP 194 Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 GHFR + GE +V + RL Y H+G+E L + ++ ++ R+ G A++ Y Sbjct: 195 GHFRFTMSGEIVVRMEERLGYTHKGIESLF-SGASIDKGMEIAGRISGDSTVAYAYGYAL 253 Query: 257 SVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTM 316 +VE ALGI P RA IR+++ E+ER+ +H ++G C+ F + +REK + Sbjct: 254 AVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILSRCALLREKILRC 313 Query: 317 AELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQ 376 A+ G R ++GGV+ D+ E + +L+ ++ +V L + + +++ RT Sbjct: 314 AQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDFYDSKNSLQDRTV 373 Query: 377 GIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 G G+LDR++A D R Y Y ++ + GDV +RV +R Sbjct: 374 GTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVWIR 433 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 + E S+ +LE L+ MP + E + L VE+ RG+ + W + N K+ Sbjct: 434 ILEIEQSVKLLEQILEGMPPGSICAERIGGEGSGKGLSVVESFRGDILTWIEI-YNGKII 492 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 R R ++ WP+L ++ G ++D PL S + YS D Sbjct: 493 RCHPRDPSWFQWPLLEKVIVGGVIADFPLCNKSFNCSYSGHD 534 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 142/452 (31%), Positives = 199/452 (44%), Gaps = 49/452 (10%) Query: 100 DSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 D+ FPS++ P A ER I D++GLIP GL D R + W HP Sbjct: 80 DAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLW---SHPPLSHT---- 132 Query: 160 LRPEPTT---DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 P P T YPF+ IPVGP+H EPGHFR V GE+++ + R+ Sbjct: 133 --PSPLTRLAQGMDYPFVRVRGDGVHEIPVGPVHAGIIEPGHFRFSVVGEKVLRLETRMG 190 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 Y H+G+ +L R E L+ R+ G A S+A++ +VE AL IE+ + +R+I Sbjct: 191 YTHKGIARLFRGR-NLPEAARLASRISGDSAVATSLAFSKAVEEALDIEISEGVRFVRAI 249 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 LLE ER+ +HL +LG + G F +RE + L G R + + GGV Sbjct: 250 LLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRLLFDSVVPGGVS 309 Query: 337 RDILKEQRLQTLKLVRE-MRADVSELVEMLLATPNMEQRTQGIGILDRQIAR-------- 387 L ++TL L E ++A+VS L + ++ R Q GIL ++A Sbjct: 310 TG-LSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEVAGRLGIGGVA 368 Query: 388 --------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN-- 437 DLR DH L GDV SRV +R E F+SL + L + Sbjct: 369 GRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLRLTHALLTSFP 428 Query: 438 -------MPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 +PD P EG G VE RGE + W + + L + Sbjct: 429 GPDICATIPDPPAPREG---------AGIVEGFRGEVLGWVRILPGKILADAHIADGSPL 479 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 W L + GN V+D PLI S +P YS +D Sbjct: 480 LWHALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/368 (29%), Positives = 182/368 (49%), Gaps = 27/368 (7%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +PVGP H EP +L V GE++VD + Y HRG+EK+ E M + + FL++RVC Sbjct: 29 VPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEG-MPWQKAAFLAERVC 87 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC AH++ + VE + R +R ++ E++R+ SHL+ + + +T F Sbjct: 88 GICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMF 147 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + RE+ + E + G+R G N++GGVR D+ ++Q L+ + +R DV Sbjct: 148 VWNMNTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIRDDVITYRR 207 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKT-------LFTFTG------ 410 + P ++ R++G+G++ + R R P A +P++ ++ G Sbjct: 208 IAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQARASGVPESDMRLQEPVYPELGFKPVYR 267 Query: 411 --GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF----VEAPR 464 GD +R++VR E S+ ++E +D +P EG + G VEAPR Sbjct: 268 KEGDNLARILVRYDECLQSIELIERIVDELP------EGRHRRELEVNAGHVDNRVEAPR 321 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN-TVSDAPLIIGSLDPCYSCTDR 523 GE V+ L + R R + N VL + G+ +++DA SLDPC +C +R Sbjct: 322 GELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAPGSPSIADAVATYASLDPCVACNER 381 Query: 524 VTLVDVRK 531 ++D R+ Sbjct: 382 FVVIDERE 389 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 146/543 (26%), Positives = 243/543 (44%), Gaps = 60/543 (11%) Query: 37 TITVKINLLPDVVQYLYYQHDGWLPVLF---GNDERTLNGHYAVYYALSMEGAEKCWIVV 93 + VK L D + +L + +LF DE G +V+Y L + K +I + Sbjct: 27 SFEVKKEHLIDTLHFLKNEASSRFEMLFDLSAIDECERGGGLSVFYYL-LSVKNKQFISI 85 Query: 94 KALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRK 153 + + D+ E P+V P A W ERE+ DM+G+ PD RR++ D W HPLRK Sbjct: 86 RTHIANDTIEVPTVVGLWPNANWYEREVYDMFGIKFTDHPDLRRILTFDFWKG--HPLRK 143 Query: 154 D------AMDYRLRPE-PTTDSETYPFINEGNSD--ARVIPVGPLHITSDEPGHFRLFVD 204 MD E P D + +G D + V+ +GP H +D ++ + Sbjct: 144 SYPCRATLMDEPFDLEGPDFDDVMKSYDIQGKQDDGSMVLNIGPNHPGTDGVIRLKVKMK 203 Query: 205 GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI 264 GE I D D + + HRG EK+AE +N + + +DR+ + G A + Y +E GI Sbjct: 204 GEFIEDLDQEIGFHHRGAEKIAERHTFHNYIPY-TDRIDYLGGVAGELPYLLGLEAMTGI 262 Query: 265 EVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSR 324 EVP+RA T+R +L E+ R+ SHL+ G H +G F REK + EL+ G R Sbjct: 263 EVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMAPAFYAFTEREKIFDVIELICGGR 322 Query: 325 KTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ 384 IGGV +D+ + + + + V +L +++ + + RTQ I + + Sbjct: 323 MHPAFFRIGGVSQDLPDGWQDKVEHACQGIEQLVPDLEKLMTHSMIFKIRTQNIAVYSQS 382 Query: 385 IAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSL 428 +A D+R D PY Y + + GD ++R ++RV+E +SL Sbjct: 383 MALDWGLTGPNLRATGINFDMRKDFPYMGYEDYDFDVPVGQDGDAYTRTVLRVQEVVESL 442 Query: 429 AMLEFALDNMPDTPLLTE-----GFSYKPHAF-------------ALGF----------V 460 ++ A MP+ P+L + GF K +A GF Sbjct: 443 KIIRQAAARMPEGPILADNAPSFGFPRKQNALRDIETLIHSFVDTGRGFNFPVAETFYAT 502 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E +G + ++ +R R R ++ ++ ++ + +G+ +S+ +IGS+D + Sbjct: 503 ETAKGVTSYHTISNGTGCPYRVRIRTPSFTHFQSVKAVSKGDLLSNIICLIGSIDYVLAD 562 Query: 521 TDR 523 DR Sbjct: 563 IDR 565 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 145/490 (29%), Positives = 217/490 (44%), Gaps = 37/490 (7%) Query: 55 QHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAA 114 Q G L ++G + T + ++ L+ G C + + A + REFPS++ P A Sbjct: 52 QQGGRLLGIWGEHQDTAGANIHAFF-LTESGYLWCTLPLPA----NLREFPSLSSVFPTA 106 Query: 115 VWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET---Y 171 ER IRD+ GL P+G PD R + WP ++HPL + PE Y Sbjct: 107 CRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMSDI-----PEDILSCAGEIDY 161 Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 + D IPVGP+H + EPGHFR GEQIV + RL Y H+G+E+L Sbjct: 162 SYRAPAGQDLHEIPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYCHKGIERLF-VGQP 220 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 + L+ RV G A++ +Y +VE+ IE+ QRA +R + LE ERL +HL +LG Sbjct: 221 PDAALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLG 280 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI------------ 339 + G Q ++E+ + + G R + +GGV D+ Sbjct: 281 ALGNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHIEQSS 340 Query: 340 -LKEQRLQTLKLVREMRADVSELVEMLLAT-PNMEQRT-----QGIGILDRQIARDLRFD 392 +RL+TL L+ + A L + L+AT P +R G+ A DLR Sbjct: 341 KAWRRRLETLDLLLQEHAG---LRDRLVATGPITAERAAYWGMAGLSGRASGQAWDLRTH 397 Query: 393 HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKP 452 Y P + GDV +R VR E F L E + N+P ++ Sbjct: 398 FAPPPYDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGSPRVALKAFPK 457 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 LG E RGE V ++ ++ + R +++ WPVL + + V+D PLI Sbjct: 458 DGEGLGICEGWRGE-VFVALRLEDGHIARCHPHDPSWSLWPVLEEAVCQDIVADFPLINK 516 Query: 513 SLDPCYSCTD 522 S + YS D Sbjct: 517 SFNLSYSGQD 526 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 181/362 (50%), Gaps = 22/362 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I +G +H + EP R FV+ E I DA+ + HRG+E++ E + + L++++C Sbjct: 16 IQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG-LPVEKANMLTEKIC 74 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC +H+ + E LG+EVP RA IR I+ E+ERLHSHLL LG C + +T Sbjct: 75 GICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGHGCETLAHETFS 134 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR-RDILKEQRLQ-TLKLVREMRADVSEL 361 M+ F +RE M + ++ G+R YG ++IGGVR R L + R+Q L + + +V + Sbjct: 135 MRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQRILDGMDLVEKNVLDF 194 Query: 362 VEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTL 405 + + R G G + ++ + RDLR D +Y N + Sbjct: 195 ANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRTD--MYEYDNFDYDI 252 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRG 465 T DV +++++RV E F+++ ++ A+ ++P+ + + ++E PRG Sbjct: 253 ITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEMIDTDLIESYIEVPRG 312 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVT 525 H + D ++ R + +N ++Y N ++D L I DPC++C+DR Sbjct: 313 TLYHSYAIEDG-RVRHCIIRTPSMSNIGAMQYACIDNHITDGQLCIVQCDPCFTCSDRAI 371 Query: 526 LV 527 V Sbjct: 372 EV 373 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 215/477 (45%), Gaps = 34/477 (7%) Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 R G ++V Y +S +GA + W + VDA S PS+ +P W EREI+D+YG+ Sbjct: 54 RDAEGKFSVRYIIS-QGANQPWGIWS--VDASSGTLPSLANVLPLLGWYEREIQDLYGIT 110 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPT-TDSETYPFINEGNSDARVIPVG 187 P+ L+L + + PL+ + + EP +E + N D + +P G Sbjct: 111 FTDHPEPYPLILHEGFIPAKPPLQTG---FDPKAEPIRGQAEPFAEANMVGDDIQRLPFG 167 Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 P+ E F GE I+ RLFY HR ME E + + L++RV G+ Sbjct: 168 PIRADVVESAQFVFHYIGEGILHYHPRLFYKHRAMEARFEG-VPISAACVLAERVSGVDS 226 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 AH +A++ ++E ALG + P RA R +L E+ERL++HL G + Sbjct: 227 VAHVLAFSQAMEAALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGI 286 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA 367 + E+ + L GSR G+ + GG+RRD+ + L ++ + + ++ L Sbjct: 287 WLEEQVKQINGRLTGSRFLRGVIVPGGLRRDLDATALIADLN---ALQPQIEDYLDTLAN 343 Query: 368 TPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGG 411 T + R G+L RQ+A RDLR DH YA Y + + T T G Sbjct: 344 TRSYLDRLLTTGVLPRQVAFDQGATGPIERASDLDRDLRRDHGYALYPELQFAVPTATEG 403 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKP--HAFALGFVEAPRGE--- 466 D +R VR +E SL ++ AL+ + P+ + P LG+ EA RG Sbjct: 404 DADARARVRDQEIRQSLHLIRQALNKLEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIY 463 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VHW ++L R + + +++NW V + + + + D + S + DR Sbjct: 464 AVHWD--AKTERLTRVKIKEPSFSNWRVFPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 222/483 (45%), Gaps = 28/483 (5%) Query: 58 GWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWG 117 G L L+G+D R + +AV A + + + + +D +P ++ AV Sbjct: 78 GRLVSLWGSDRRAMGDGFAVGAAYATA---EGLLWAELGLDVVRPAYPDISRFFVPAVRM 134 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR-KDAMDYRLRPEPTTDSETYPFINE 176 +R D+ G+ D R + WP D PLR ++ R P+P + YPF+ Sbjct: 135 QRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLRIENTGQERFAPQP----DNYPFVFV 190 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 I VGP+H + EPGHFR V GE+++ + R Y H+G+E+ M +E Sbjct: 191 EGDGVHEIAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRF-MGMDIDEGA 249 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 L+ RV G A++ AY + E+A G+ VP+RA +R++LLE ER+ +HL +LG + Sbjct: 250 RLAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGND 309 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 F QF R+RE + G R GGV RD+ Q + + A Sbjct: 310 AAFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVA 369 Query: 357 DVSELVEML--------------LATPNMEQRTQGIGILDR---QIARDLRFDHPYADYG 399 +V+EL ++ P + R G+ R Q+A DLR D P+ Y Sbjct: 370 EVAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGRASGQVA-DLRVDFPWPPYD 428 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + T T GDV +RV VR E F+SL +++ L +PD PL + + A G+ Sbjct: 429 KLAVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPDGPLDAP-VAIRDAASGAGW 487 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +E RGE ++ R C ++ NWPV+ + N V+D PLI S + YS Sbjct: 488 IEGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASIDNIVADFPLINKSFNLGYS 547 Query: 520 CTD 522 D Sbjct: 548 AQD 550 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 135/449 (30%), Positives = 203/449 (45%), Gaps = 31/449 (6%) Query: 97 VDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 V + R PS+ ++P W ERE+ D+YGL G P+ LVL + P D PL Sbjct: 93 VRPEDRTLPSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLVLHEGEPRDPAPL-ASGF 151 Query: 157 DYRLRPEPTTDSETYPFI--NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYR 214 D P D P I D + +P GP+ E F F GE I+ R Sbjct: 152 D---PAAPARDYAPLPPIVPQVQGPDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHPR 208 Query: 215 LFYVHRGME-KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTI 273 LFY HR ME + + V L++RV GI AH++A+ +VE A+G P RA + Sbjct: 209 LFYKHRAMEGRFQGATLATGAV--LAERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYL 266 Query: 274 RSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG 333 R +L E+ERL++HL LG G + + E+ + L GSR GL G Sbjct: 267 RVVLAELERLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQINGRLTGSRFLRGLITPG 326 Query: 334 GVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------- 386 G+RRD+ + L V + ++ ++ L T + R G L+RQ+A Sbjct: 327 GLRRDLDITGLDKALDSVND---EIDRYLQRLENTRSHLDRLMTTGRLERQVAFDQGACG 383 Query: 387 ---------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN 437 RDLR DHPYA+Y + ++ GGD +R MVR++E +SLA++ + Sbjct: 384 PIERASNLDRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGR 443 Query: 438 MPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLG-DNQKLFRWRCRAATYANWPV 494 +L P LG+VEA RG ++ L D +L R + + +++NW V Sbjct: 444 TKPGEVLRFDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRV 503 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + + D + S + DR Sbjct: 504 FPFTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 118/383 (30%), Positives = 187/383 (48%), Gaps = 49/383 (12%) Query: 186 VGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 VGP H S GH R+FV +G+ I D D + YVHR +EKL+E R Y + L +R Sbjct: 32 VGPQHPGS---GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENR-NYMHLIPLVERPA 87 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + ++ Y +VE LG++VP+RA +RS EV R+ SHL LG+ F+G TGF Sbjct: 88 ILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHSTGF 147 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M F RE +T+ E L G+R T + GGVRRDI +E + TLK + R + + + Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 + P++ R + +G++ ++ A D+R PY Y + + Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--------------SYK-- 451 + GD +R +VR++E S+ +LE + N+P+ +L++ F +Y+ Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPTRLKKYWETYRRI 327 Query: 452 -----------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 P A+ VEA RGE V++ + + K +R R +Y + V + + + Sbjct: 328 VLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFKELCK 387 Query: 501 GNTVSDAPLIIGSLDPCYSCTDR 523 G+ +D I GSLD DR Sbjct: 388 GSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 181/370 (48%), Gaps = 24/370 (6%) Query: 176 EGNSDARVI-PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 E SD+ +I +GP H P L ++GE++ A + Y+H+G+EK+ E R Y + Sbjct: 23 EIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRT-YLQ 81 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +DR+C + ++ AY +VE LGI P+RA IR IL E+ R+ SHLL G Sbjct: 82 GIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFL 141 Query: 295 HFVGFDT--GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 +G T F RE + + E + G+R T+ GGVR D+ + +++ Sbjct: 142 TLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILK 201 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYA 396 MR E +++L + P +R +GIG+L AR D+R + P Sbjct: 202 RMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPLRASDTPYDMRREDPIL 261 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL---LTEGFSYKPH 453 Y ++ + T GD +RV VR++E +S+ ++E LD +PD P+ L + +P Sbjct: 262 VYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPDGPIQEKLPKKIKPEP- 320 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 A VE PRGE + + ++K +R + R YA L +L G V+D I GS Sbjct: 321 GEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQALPPLLEGAYVADVVAIAGS 380 Query: 514 LDPCYSCTDR 523 +D C S DR Sbjct: 381 MDACTSEVDR 390 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 159/582 (27%), Positives = 253/582 (43%), Gaps = 74/582 (12%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPV--LFGNDE 68 + I+ AL+ QF + + I +K L V+++L Q ++ + L G DE Sbjct: 38 DPIILALRNQFSPDAFTIQSTRTGMLVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDE 97 Query: 69 RTL-------NGHYAVYYAL-SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 R + ++V+Y L S+E I++K + PS+ P A W ERE Sbjct: 98 RQRVYRHGLPDADFSVFYHLISIERNRD--IMLKVALSEKDLNVPSLVSLFPNANWYERE 155 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTT--------DSETYP 172 + DM+G+ G P+ RRL++P W HPL KD +P + E+ Sbjct: 156 VWDMFGITFTGHPNLRRLLMPVTW--QGHPLCKDYPARATEFDPFVLTKQKLDLEMESLT 213 Query: 173 FINE------GNS--DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEK 224 F E GN D + +GP H +S L +DGE+I+D + Y HRG EK Sbjct: 214 FKPEEWGMARGNEHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEK 273 Query: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 + E R ++ +DR+ + G + + Y +VE GI+VP+R TIR +L E+ R++ Sbjct: 274 MGE-RQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRIN 332 Query: 285 SHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 SHLL + VG T F R+K + E + G R IGGV D+ + + Sbjct: 333 SHLLYISTFIQDVGAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQ 392 Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARD------------LRFD 392 + + M + V+ L ++ R+ G+ + A D L FD Sbjct: 393 KLLQEFLDWMPKRLDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFD 452 Query: 393 ----HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP------DTP 442 PY+ Y N + GD + RVM++V+E SL +L+ L+NMP D P Sbjct: 453 IRKWRPYSGYENFEFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPAGPFKADHP 512 Query: 443 LLTEGFSYK---------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFR 481 L T + P A +EA +G + ++ N +R Sbjct: 513 LTTPPPKERTLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYR 572 Query: 482 WRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R R ++A+ + ++RG+ VSD + +GS+D S DR Sbjct: 573 TRVRTPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 151/585 (25%), Positives = 253/585 (43%), Gaps = 79/585 (13%) Query: 13 ILAALKTQFPGAVLDEERQTPEQ--VTITVKINLLPDVVQYLY----YQHDGWLPVLFGN 66 +L L +FP AVL R+ P++ ++ V+ L +V ++L+ D + + Sbjct: 4 VLETLHERFPEAVLSV-REDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICSAD 62 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 L +Y+ LS+ + I +K V + +VT A + ERE+ D+ G Sbjct: 63 YPDDLERFEVIYHFLSLPHNTR--IRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLMG 120 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKD----------AMDYRLR---PEPTTDSETYP- 172 + G PD RR++LP+D+ E+ HPLRKD D+ R PE P Sbjct: 121 ITFEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIPQ 179 Query: 173 ------FINEGNSDAR-----VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRG 221 + A+ ++ +GP H ++ L +DGE++ A + Y+HRG Sbjct: 180 DQRHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHRG 239 Query: 222 MEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVE 281 +EKLAE + Y +V +DR+ +C ++ AY +VE +G+ +P+RA +R+I+ EV+ Sbjct: 240 VEKLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQ 298 Query: 282 RLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK 341 R+ HL LG +G T F FR RE + E L G+R T IGGV D+ Sbjct: 299 RIVGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLTP 358 Query: 342 EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------I 385 + ++ V E +L RT+ + ++ + + Sbjct: 359 ALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSGV 418 Query: 386 ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT 445 A D+R PY Y + + GGD + R +RV+E S ++E LD +P+ P++ Sbjct: 419 AYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIMA 478 Query: 446 EGFSYKPHA-----------------FALGF----------VEAPRGEDVHWSMLGDNQK 478 + P A F GF E P+GE + + + + Sbjct: 479 DMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSPR 538 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R + R+ ++ + +M RG +SD I G+ D DR Sbjct: 539 PYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 134/489 (27%), Positives = 212/489 (43%), Gaps = 38/489 (7%) Query: 54 YQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPA 113 ++ G L LFG + G V L+ + + ++ + DA FPS+ +PA Sbjct: 50 HRGGGRLAALFGRPD--AGGGVLVTAVLADDPEGRLALLATRVADA----FPSIAAELPA 103 Query: 114 AVWGEREIRDMYGLIPVGLPDQRRLVLPDDW--PEDMHPLRKDAMDYRLRPEP-TTDSET 170 A ERE+ + +GL P G P W P P R+ A D R +P T Sbjct: 104 AQAFERELAEQWGLRPEGHP----------WLKPLRFEPPRRAAPDPFGRQDPRATIPGE 153 Query: 171 YPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRM 230 YPF + + VGP+H EPGHFR GE++ + L Y HRG+E+L R Sbjct: 154 YPFFRVEGEEVHEVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHRGVERL--LRG 211 Query: 231 GYNEVTF-LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 G + + L++ + G H +AY +VE+ G+ RA ++R I LE+ER+ +H+ + Sbjct: 212 GPDRRSMALAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLELERIANHVGD 271 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 LG VGF +R + + + G+R L GGV+ D+ E Sbjct: 272 LGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARALAA 331 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH 393 VR ++ +P++ R +G G + +A RD+R DH Sbjct: 332 RVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARASGVDRDVRRDH 391 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH 453 + Y + T GDV +R ++R+ E S+ + L+ +P P T P Sbjct: 392 AFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPSRTAPGPLAPG 451 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 A + VE RGE H ++ +L ++ + ++ NW L LR +SD PL S Sbjct: 452 ALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQISDFPLCNKS 511 Query: 514 LDPCYSCTD 522 + Y+ D Sbjct: 512 FNLSYAGHD 520 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 140/440 (31%), Positives = 203/440 (46%), Gaps = 42/440 (9%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 FPS+ PA W ERE+ + +GL+P G P + PLR Y + Sbjct: 7 FPSLAEEFPALDWFERELWEDHGLVPEGHPS-------------LKPLRNHHSVYSRQAV 53 Query: 164 PTTDSET-YPFIN-EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRG 221 P YPF EG + +PVGP+H EPGHFR V GE+I+ + RL Y HRG Sbjct: 54 PKGIVRLPYPFDRVEGLHE---VPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQHRG 110 Query: 222 MEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVE 281 +E+L + + + L++R G AH++A+ +VE ALG+EVP RA+ +R +LLE+E Sbjct: 111 VEQLFQGK-SLEQALLLAERAGGEP-VAHALAFCQAVEAALGVEVPPRAYRLRRVLLELE 168 Query: 282 RLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNL--IGGVRRDI 339 RL HL +L +G+ Q +VR E L G R YG N +GGV DI Sbjct: 169 RLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHR--YGRNALTVGGVGFDI 226 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYG 399 E +++ + ++ A+ + L P + R + +G L + AR L P A Sbjct: 227 DPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAARAC 286 Query: 400 NIPKTLF-------TFT-----GGDVFSRVMVRVKETFDSLAMLEFALDNMP-----DTP 442 + + L TFT GGDV +R V +E L+ L +P + P Sbjct: 287 GLGRDLRQDDALYQTFTPVVRSGGDVLARAQVYAEELRQGFVYLDRFLGALPQGEVANGP 346 Query: 443 LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 A A VEA RGE +W L N ++ R + ++ NW L +RG Sbjct: 347 TTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALELAVRGM 405 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 + D P+I S D Y+ D Sbjct: 406 GLPDFPIINKSFDLSYAGCD 425 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 157 bits (398), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 165/601 (27%), Positives = 262/601 (43%), Gaps = 86/601 (14%) Query: 2 NVNSSSNRGEAILAALKTQF-------PGAVLDEERQTPEQV-TITVKINLLPDVVQYLY 53 ++ +SN + +L LK +F PG + ++T + + T V N + +V+ YL Sbjct: 15 DMGGASNASD-VLEELKNRFGPPGTDNPGGPMGVVQKTGDDLPTQWVSRNRVHEVLHYLK 73 Query: 54 YQHDGWLPVLF---GNDERT--------LNGHYAVYYALSME-GAEKCWIVVKALVDADS 101 + + +L+ DERT + +Y+ LS E A+ C V AL D D Sbjct: 74 LKAERPYRMLYDLTAIDERTRVHREDQPASRFTVIYHLLSFERNADVCLKV--ALTDTDL 131 Query: 102 REFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR 161 R P++T PAA W EREI DM+G++ G P RR++LP W H LRKD Sbjct: 132 R-MPTITDIWPAANWYEREIWDMFGIVFDGHPHLRRILLPPWW--QGHALRKDHPARATE 188 Query: 162 PEP--------TTDSETYPFINE--------GNSDARVIPVGPLHITSDEPGHFRLFVDG 205 EP + ET F E +D + +GP H + L +DG Sbjct: 189 MEPFHLSTEKEEAEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDG 248 Query: 206 EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE 265 E+I+DA + + HRG EK+ E R ++ +DR+ + G +++ Y +VE GIE Sbjct: 249 EEIIDAVPEIGFHHRGAEKMGE-RQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEKLAGIE 307 Query: 266 VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRK 325 VP R +R ++ E R+ SHL+ G +G + F RE+ + E + G R Sbjct: 308 VPDRVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRM 367 Query: 326 TYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG--ILDR 383 IGGV +D+ + M A + E ++ + ++ RT+G+G +D Sbjct: 368 HPSWYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDE 427 Query: 384 QI--------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLA 429 I D R PY+ Y + T GD + R VRV+E SL Sbjct: 428 AIEWGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRCAVRVQEIRQSLR 487 Query: 430 MLEFALDNMP------DTPLLTE------------------GFSYK---PHAFALGFVEA 462 +++ L+NMP D PL T G S+ P A +EA Sbjct: 488 IIDQCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVGIEA 547 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +G + ++ + N +R R R ++ + ++ + RG +SD I+GS+D + D Sbjct: 548 TKGNNGYYLISDGNTTAYRVRIRTPSFPHLQMIPLISRGLMISDLIAILGSIDFVMADVD 607 Query: 523 R 523 R Sbjct: 608 R 608 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 116/441 (26%), Positives = 197/441 (44%), Gaps = 27/441 (6%) Query: 101 SREFPSVTPRVPAAV-WGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 + F S+T V EREI + YG+ P G P + + ++ KD Sbjct: 76 GKSFQSLTGAVSEKFHMFEREIAEQYGITPDGHPWLKMVRYHKNYAG-----AKDVFGNN 130 Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 E + YPF + + VGP+H EPGHFR GE+++ + +L Y H Sbjct: 131 YGKENIPGN--YPFFSVEGESIHEVAVGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQH 188 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+EK+ T + + + + G H ++ ++E GI V + A IR+ LE Sbjct: 189 RGIEKMLPT-LPQKRFPIICESIAGDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALE 247 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 +ER+ +H+ +LG F+ F R+R + + + ++L G+R GL GGV + Sbjct: 248 LERICNHIGDLGALAGDAAFNPPAAYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIM 307 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL---------- 389 +EQR + + E+ ++ + +++ + ++ R + G + ++A+DL Sbjct: 308 REEQRKLIREKLLEVTGEIENICDLIFSAHTVQARFEHTGTVQHEMAKDLGLVGYSGRAS 367 Query: 390 ------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP- 442 R P Y +P T GDV SR MVRV+E SL ++ ++ +T Sbjct: 368 GIAYDVRNSFPTECYRELPANENRVTNGDVNSRGMVRVEEIMHSLKLINILIEESENTAS 427 Query: 443 -LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 + + P+AF + E RGE H + K+ R++ + ++ NW L LR Sbjct: 428 EVHMQDQILAPNAFIITLNEGWRGEISHCILTDKKGKVQRYKIKDPSFHNWTGLAMSLRN 487 Query: 502 NTVSDAPLIIGSLDPCYSCTD 522 +SD PL S + Y D Sbjct: 488 QEISDFPLCNKSFNLSYCGFD 508 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/359 (28%), Positives = 172/359 (47%), Gaps = 24/359 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H EP + GE+++ + L Y+ +G+E++ R + EV FL++RVC Sbjct: 9 IPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGR-PWQEVMFLAERVC 67 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H++ + ++E I VP RA +R ++ E++R+ SH+L C+ + +T Sbjct: 68 GICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTIEHETLA 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M +RE + E + GSR + GGVR D+L E L + ++ ++ V Sbjct: 128 MYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEEMKRYVR 187 Query: 364 MLLATPNMEQRTQGIGILDRQIA-----------------RDLRFDHPYADYGNIPKTLF 406 + P + R++GIG + R+ A DLR HP Y + T Sbjct: 188 IFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHP--TYRELGFTQI 245 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T T GD F+RVMVR +E F S+ ++ ++ +P+ P+ G A G EAPRGE Sbjct: 246 TRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGGLCKAGEASYAG--EAPRGE 303 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRY--MLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + ++ R + N + ++ +++D S DPC +C +R Sbjct: 304 LTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 220/456 (48%), Gaps = 55/456 (12%) Query: 101 SREFP---SVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 SR+ P S++ P++ + ERE+ + +G++ G R L D PLRKD Sbjct: 258 SRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLLDV-STPKFPLRKD--- 313 Query: 158 YRLRPEPTTDSETYPFINE--GNSDARVIP------------VGPLHITSDEPGHFRLFV 203 R E + E PF+ + GN D +P VGP H S GH RL V Sbjct: 314 --FRLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDEYILVVGPQHPGS---GHMRLIV 368 Query: 204 --DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA-HSVAYTNSVEN 260 DG+ I D YVHRG+EK+AE+R+ Y + L +R C I FA + + Y ++E Sbjct: 369 KLDGDIIKDVIPDPGYVHRGVEKIAESRI-YIKNIPLVERPC-ITDFANYDICYVKAIEE 426 Query: 261 ALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELL 320 ALGIEV +RA IR+IL E+ R+ +HL + G+ F+G TGFM F +RE +L Sbjct: 427 ALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGLREFVCEALTIL 486 Query: 321 IGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGI 380 G+R T + GGVR D+ E+ + ++V MR + + +M + P + R + +GI Sbjct: 487 TGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFVKNPTVVARLENVGI 546 Query: 381 LDRQIARDLRFDHP---------------YADYGNIPKTLFTFTGGDVFSRVMVRVKETF 425 L ++ A++L P Y Y + + T GD ++R++VRV+E Sbjct: 547 LSKKDAKELGIVGPFLRASNVRHDWRLKGYEAYDCVDWDVVTAEEGDSYARLLVRVEEIN 606 Query: 426 DSLAMLEFALDNMPDTPLLTEGFSYKPHAFALG----FVEAPRGEDVHWSMLGDNQKLFR 481 S+ +++ + ++P + + LG VE RG ++ S++ D + Sbjct: 607 QSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARG-TIYMSIVSDGESTTP 665 Query: 482 WRCRAATYANWPVLRYML---RGNTVSDAPLIIGSL 514 +R R T +W LR + +G ++D I GS Sbjct: 666 YRFRIVT-PSWYNLRGFVEACKGERLADLQAIYGSF 700 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 125/440 (28%), Positives = 197/440 (44%), Gaps = 43/440 (9%) Query: 101 SREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 S +PS+TP+ P A ERE+ + +GL+PVG P W + P+R + Sbjct: 78 SGSYPSLTPKHPQAHLFEREVWEQHGLVPVGHP----------W---LKPVR-----HTF 119 Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 P PF + + VGP+H EPGHFR GE+++ + L Y HR Sbjct: 120 ENAPAN----APFFRVEGGEVHEVAVGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHR 175 Query: 221 GMEKLAETRMGYNEVTFLS-DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 G+E + G + T + V G AH+ A+ + +E G+E P RA +R++ LE Sbjct: 176 GIEDALQN--GPHPATMNQIETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALE 233 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 +ERL +H ++G V F ++R + + LL G+R GL GG R D Sbjct: 234 LERLANHTGDMGALAMDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHD- 292 Query: 340 LKEQRLQTL-KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------ 386 L+E+RL+TL + ++ ADV + + ++ R + +G++ A Sbjct: 293 LEEERLKTLTERLKAHMADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARA 352 Query: 387 ----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 RD+RFDHP + + + GD+F+R VR E S L L D Sbjct: 353 CGLVRDVRFDHPAGWHRFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGD 412 Query: 443 LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 + + +P + A+ VE RGE H ++ + ++ ++ NW L LRG Sbjct: 413 ITAALPAPQPESLAVALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGT 472 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 VSD P+ S + Y D Sbjct: 473 AVSDFPICNKSFNLSYCGFD 492 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 126/448 (28%), Positives = 191/448 (42%), Gaps = 39/448 (8%) Query: 96 LVDADSR-EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDM--HPLR 152 +V AD+ F S+TP P EREI + + ++P G P W + + HP Sbjct: 73 VVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVLPQGHP----------WLKSVRSHPPV 122 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 A TTD F + +A + VGP+H EPGHFR GE + + Sbjct: 123 VAAHGKAAHAG-TTD-----FFSIDGEEAHEVAVGPVHAGIIEPGHFRFQCHGETVYHLE 176 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 L Y HRG+E + + + + + G H A +E GI+VP R Sbjct: 177 ISLGYQHRGVEPALKDGPDKRTLHYF-ETLAGDTSIGHGTAGCCMIEALAGIDVPPRGQA 235 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR+I E+ER+ +H+ +LG VGF R+R ++ + ++ G+R GL + Sbjct: 236 IRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLVIP 295 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GG DI Q + L+ + E+ AD +E++L TP++ R + G + Q AR Sbjct: 296 GGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNTPSVLARLENTGQVPTQTAREIGLV 355 Query: 388 -----------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D+R HPY +Y P + T GD +R +R E S + L Sbjct: 356 GLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTLLA 415 Query: 437 NMP--DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 ++P + L EG P A VE RGE H + K ++ ++ NW Sbjct: 416 DLPGGEVANLWEG-KLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNWFG 474 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + LR +SD PL S + Y D Sbjct: 475 VSLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 152/533 (28%), Positives = 228/533 (42%), Gaps = 65/533 (12%) Query: 52 LYYQHDGW------LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFP 105 L Y D W L L DER G + + Y L + + ++ + A P Sbjct: 37 LRYLRDDWRSPYRCLWDLTAMDERPSGGGFTLIYHLFNYAVGEL-LRLRVPLPAGQETAP 95 Query: 106 SVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRK-DAMDYRLRPEP 164 S+T A W ERE+ D++GL G PD RR++LP W HPLRK +A+ RP Sbjct: 96 SLTDLYANANWYEREVYDLFGLRFAGHPDLRRILLPPQW--RGHPLRKEEAIRATERPPI 153 Query: 165 TTDSE-------TYPFINEGNS----DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADY 213 D E Y +G + + V+ VGP H + + L + GE+IV D Sbjct: 154 VIDREHLQERLGEYQRSPDGQALDDGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDP 213 Query: 214 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTI 273 + Y HRG+EK+AE +N + + +DRV + G Y ++E I VP+RA I Sbjct: 214 DIGYHHRGVEKIAEGHSYHNFIPY-TDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGI 272 Query: 274 RSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG 333 R++L E+ R+ SHL+ LG + +G FR R + + E G R IG Sbjct: 273 RTLLAELCRISSHLVWLGSYGNDLGTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIG 332 Query: 334 GVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG-------------- 379 GV D+ + R L L+R + + + + + P RT+G+G Sbjct: 333 GVADDLPEGWRSDLLALLRRIEKGLPDSERLTVENPIFRARTEGVGVVTAEQAERWCATS 392 Query: 380 ILDRQIAR--DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN 437 IL R R DLR PY Y + + T GD +SR + + E +S+ +L D Sbjct: 393 ILLRSTGRAFDLRKAAPYGLYDRVDFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADI 452 Query: 438 MPDTPLLT---------------------EGFSYKPHAF------ALGFVEAPRGEDVHW 470 +P+ P L F AF ALG E+ RG ++ Sbjct: 453 LPEGPTLACDAPLALMPKSRTLLDIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYF 512 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + K +R R R ++A+ ++ + RG + D IGSLD + DR Sbjct: 513 VVSDGGPKPYRLRVRTGSFAHVQMITELGRGLRLPDFIATIGSLDYVLADLDR 565 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 206/466 (44%), Gaps = 47/466 (10%) Query: 100 DSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 ++ +P ++ +A +R + D+ GL G D R + WP D HPLR+ A Sbjct: 105 EAGSYPDLSAIFASATRMQRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGE 164 Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 T D YPF+ I VGP+H EPGHFR V GE+++ + RL Y H Sbjct: 165 RFEYATAD---YPFVPVAGDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAH 221 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+E+L E R + L+ R+ G A + AY ++E AL I VP RA +R++LLE Sbjct: 222 RGVERLFE-RADALAGSRLAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLE 280 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 ER+ +HL +LG + GF G F R++E + M + + G R + GGV RDI Sbjct: 281 RERVANHLGDLGALGNDAGFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDI 340 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------- 386 + + + +V + + ++ R G G LD Q Sbjct: 341 AADDAAAIVAQCDRIEREVRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARAS 400 Query: 387 ---RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 RD+R DH A Y + + GDV +RV VR ET++S+ + L ++PD L Sbjct: 401 GQPRDVRADHRLAPYDALRIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGL 460 Query: 444 LTE--GFSYKPHAFA-------------------------LGFVEAPRGEDVHWSMLGDN 476 E + P A A +G++E RG L Sbjct: 461 AAEIAPGATVPGARADAGGACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDAR 520 Query: 477 QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + R C ++ NWP L + + GN V+D PLI S + Y+ D Sbjct: 521 GAVARCHCHDPSWHNWPALEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/415 (27%), Positives = 195/415 (46%), Gaps = 68/415 (16%) Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 +P T SE Y + + GP H + L +DGE++VDA + Y+H Sbjct: 6 KPSSTVKSEDYLW---------TLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHS 56 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 G EK+ E + +N+ ++DR+ I A++VA+ +VE +GIE+ R IR+I+ E+ Sbjct: 57 GFEKIGE-HLDFNQYVTVTDRMNYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICEL 115 Query: 281 ERLHSHLLNLGLSCHFVGFDTG----FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 R+ HLL+ G +G DTG F+ F RE+ + E L G+R T +GG+ Sbjct: 116 ARISDHLLSTGA----MGLDTGAFTFFLYAFYQRERIYDIFETLCGARFTNSYTRVGGLS 171 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ------------ 384 +D+ + +R + ++ ++ R +G+G+L ++ Sbjct: 172 QDMTPLVIEKIRDFLRTFPQTIDDMERLVNRNRIFVDRMKGVGLLSKERATNMSATGPVA 231 Query: 385 ----IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 + RDLR D PY YG++ + T GD F+R VR+ E +SL ++ AL+N+P Sbjct: 232 RASGVTRDLRKDEPYLAYGDLDFQVCCATAGDCFARYYVRMAEMRESLKIVAQALENLPA 291 Query: 441 TP-------------------------------LLTEGFSYKPHAFALGFVEAPRGEDVH 469 P +L GF+ P+ +EAP GE + Sbjct: 292 GPVNVGMDDRAALPSKAEVYQTIEGTITHFELVMLNRGFTV-PNEEVYSAIEAPNGE-LG 349 Query: 470 WSMLGDNQKL-FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + ++GD + +R RCR ++ ++ + ++RG+T+SD ++GSL+ + DR Sbjct: 350 FYLVGDGSDVAYRARCRPPSFIHFSLFPELIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 188/392 (47%), Gaps = 46/392 (11%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E + D + +GP H ++ +L ++GE ++ D + Y+H G+EK E+R Y++V Sbjct: 13 EESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRT-YHQV 71 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L DR+ + G A A+ ++E + IEVP+RA TIR ILLE+ R+ SHLL G S Sbjct: 72 FTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSAL 131 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + + FM F REK + + E + G+R L IGG+ +D+ + + + + Sbjct: 132 ELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQ 191 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYG 399 EL +L +R QG+ ++D++I + D+R +PY Y Sbjct: 192 KIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYE 251 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-------------------- 439 N + T GD ++R +VR++E S++++E A+ + Sbjct: 252 NYNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTNDRKVALPPRKELA 311 Query: 440 --------DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 L++EG + P VE+ RGE H+ + K +R R R+ ++++ Sbjct: 312 RSMEAVIHQFKLISEGL-HPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSFSH 370 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VL+ +LRG+ +SD + I S+DP DR Sbjct: 371 VEVLKKVLRGHVISDVVVAIASVDPILGDVDR 402 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 147 bits (372), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 127/439 (28%), Positives = 185/439 (42%), Gaps = 39/439 (8%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 +PS+TP P W ERE+ + +G++P G P W + P+R RP Sbjct: 74 YPSLTPDCPQCHWFERELYEQWGILPDGHP----------W---LKPIRFTTPPGAGRPR 120 Query: 164 PTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGME 223 P Y + + + VGP+H EPGHFR GE++ + L + HRG+E Sbjct: 121 PAPGVTDYFQVR--GEEVHEVAVGPVHAGIIEPGHFRFQCFGEEVFHLEISLGFQHRGIE 178 Query: 224 KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERL 283 + V F+ + G HS+A+ +E G P R I LE+ERL Sbjct: 179 AMLAGGPDPRTVHFM-ETAAGDTSIGHSLAHAAVIEALSGRTAPPRGRAIGRAALELERL 237 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 +H +LG VGF R+R + M LL G+R GL GG D+ Sbjct: 238 ANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCGNRFGRGLVRPGGTAFDVDTGL 297 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IAR 387 + R E+L A+ + R +G G L + +AR Sbjct: 298 LRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLTAEKALDLGLVGPPARACGLAR 357 Query: 388 DLR--FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL-- 443 D R F P A +I +L F GDV++R +VR E SL L+ L ++PD P Sbjct: 358 DARRTFPQPGAGARDIALSLHDF--GDVYARGLVRRLEMEASLDFLDGLLADLPDGPTRE 415 Query: 444 LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 L G P A+G +E RGE H ++ G + + ++ ++ NW L LRG Sbjct: 416 LLPG-RLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKIIDPSFHNWFGLAQALRGQQ 474 Query: 504 VSDAPLIIGSLDPCYSCTD 522 +SD PL S + Y D Sbjct: 475 ISDFPLCNKSFNLSYCGHD 493 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 147 bits (372), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 129/436 (29%), Positives = 197/436 (45%), Gaps = 50/436 (11%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQ------RRLVLPDD- 143 +V+ VD ++RE PS++ P W E E +M+G+ G PD R+L+L +D Sbjct: 69 VVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGRIRKLLLSEDP 128 Query: 144 --WPEDMHPLRKDAMDYRLRPEPT------TDSETYPFINEG-NSDARVIPVGPLHITSD 194 +P+D PL KD+ Y+ P+ TD E EG D + VGP H + Sbjct: 129 RLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQE-----REGLREDLTYVYVGPQHPATH 183 Query: 195 EPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 P F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Y Sbjct: 184 GPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKE-YLKVIPLLDRQCYIDGIGWEWPY 242 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 ++E + ++V +RA +R + E+ R+ SHLL +G V T F R RE + Sbjct: 243 VMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFI 302 Query: 315 TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQR 374 + E+L G R T+ GGV D+ + + K+V +L+E L P + R Sbjct: 303 NLLEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNPTVAMR 362 Query: 375 TQGIGILDRQ----------------IARDLRFDHPYADYGN-IPKTLFTFTGGDVFSRV 417 +G+ + + +A DLR + PY Y + I + GD R+ Sbjct: 363 AEGVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDRM 422 Query: 418 MVRVKETFDSLAMLEFALDNMPDTPLLTEG--------FSYKPHAFALGFVEAPRGEDVH 469 +VR +E SL ++ L + + G F KP A G+ ++PRGE+ Sbjct: 423 LVRFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKP-GIAYGYHDSPRGENG- 480 Query: 470 WSMLGDNQKLFRWRCR 485 +L N +WR R Sbjct: 481 -ILLVANPSDPKWRTR 495 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 182/396 (45%), Gaps = 50/396 (12%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRM 230 + EG+ + +GP H +S GH R V G+ IV D + YVHR MEKLAE R Sbjct: 14 LLREGDESVYELFIGPQHPSS---GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGRE 70 Query: 231 GYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 + L +R+ I +V ++E L +E P RA +R++L E+ R+ SHL + Sbjct: 71 AIKAIPLL-ERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGM 129 Query: 291 GLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 G++ + T FM F RE + +AE L G+R T+ ++ GGVRRD+ + + K Sbjct: 130 GIAGIMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKA 189 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHP 394 R M + + + + L P + R +G+G+L + + D R Sbjct: 190 ARYMERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADD 249 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF------ 448 Y Y ++ + T GD +R++VRV+E S++++ L MPD P+L+E + Sbjct: 250 YGAYKDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPP 309 Query: 449 -------------------SYK-PHAFALGFVEAPRGEDVHWSMLGD-NQKLFRWRCRAA 487 S K P A+ E GE + + + GD + K +R R Sbjct: 310 KTRERVLQEGRVKFPALFASLKLPAGEAVARAEMGHGE-IFYHITGDGSAKPYRLRVVTP 368 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ N + RY+ G+ D P I GSLD DR Sbjct: 369 SFRNVILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 145 bits (366), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 31/369 (8%) Query: 97 VDADSREFPSVTPRVPA---AVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRK 153 V A E S+ +PA A W ERE DM+G+I G P+ R+++ + HPLRK Sbjct: 86 VKAQVGEGESIGTAIPAYRGADWFEREAYDMFGIIFEGHPNLRKILTHHQFVG--HPLRK 143 Query: 154 DAMDYRLRPEPTTDSETYPFINEGNSDARVIP-------VGPLHITSDEPGHFRLFVDGE 206 D D + T+S F NE S V+ +GP H +DGE Sbjct: 144 D-YDAN-NQQACTNSLPIHFNNEPGSPGDVLNDKYLPLNIGPSHTAMHGTLRVMAEMDGE 201 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 IV + + Y+HR EK+AET YN+V +DR+ +++ Y +VE LG+E+ Sbjct: 202 TIVRCNNEIGYLHRCFEKMAETH-PYNQVIPYTDRLNYCSAPMNNIGYCKAVERLLGVEI 260 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P +A +R IL E+ R+ H + +G +G T F F +REK + E L G+R T Sbjct: 261 PPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFFYMFGMREKVYGLFEKLCGARLT 320 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGI-------- 378 + IGG+ +D + + L LV+E+R E+ M++ QRT+ + Sbjct: 321 VSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDEMANMVIDNKIFIQRTKNVCPVSAADA 380 Query: 379 ------GILDRQ--IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 G + R + DLR PY Y + + T GD++ R +VR +E S+ + Sbjct: 381 IQWGYTGPMLRACGVNLDLRKAQPYYGYDALDFDVPVGTNGDIYDRYLVRFEEMRQSVRI 440 Query: 431 LEFALDNMP 439 +E N+P Sbjct: 441 IEQVCKNVP 449 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 145 bits (365), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 103/369 (27%), Positives = 179/369 (48%), Gaps = 22/369 (5%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 NE +++ + +GP H ++ +L VDGE I A + Y+HRG EKLAE + Y + Sbjct: 3 NELKTESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFL-YTQ 61 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +DR+ + ++ Y ++E L EVP+RA +R I +E+ R+ SHL+ G Sbjct: 62 FIPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTYL 121 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +G + F+ FR RE + + G+R T+ + IGGV+ D + L+ V E+ Sbjct: 122 LDIGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEEL 181 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADY 398 + ++SE ++ + RT G+G+L ++ +AR D+R PY+ Y Sbjct: 182 KHNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSVY 241 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL-----TEGFSYKPH 453 + + GDV++R VR++E +SL ++E A N+P+ ++ P Sbjct: 242 DHFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKPPE 301 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 EA +GE +++ K +R + R ++ N +L+ ML G ++ + I GS Sbjct: 302 GEVYTRAEASKGEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIFGS 361 Query: 514 LDPCYSCTD 522 LD D Sbjct: 362 LDVVLGEVD 370 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 137/490 (27%), Positives = 200/490 (40%), Gaps = 84/490 (17%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLP---DQRRLVLPDD-----------WPEDMH 149 F S+TP +P + EREI + +G+ PVG P RR+ PD Sbjct: 88 FVSMTPELPQLHYFEREIYEQWGVEPVGHPWLKSVRRI--PDSAEAAARNAAESQTSSAA 145 Query: 150 PLRKDAMDYRLRPEPTTDSET------YPFINEGNSDARVIPVGPLHITSDEPGHFRLFV 203 P ++ A + P P + YPF +D + VGP+H EPGHFR Sbjct: 146 PAQESA---EVVPSPALTASARPQTLPYPFYRVEGADVHEVAVGPVHAGIIEPGHFRFQC 202 Query: 204 DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALG 263 GE ++ + L Y HRG+E + T+ L + G AH+ A+ +E G Sbjct: 203 YGENVLHLEIALGYQHRGLEAMI-TQGPAGRRLHLLECAAGDSTVAHATAHCVLLERMTG 261 Query: 264 IEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF----RVREKSMTMAEL 319 + +RA +R I LE+ERL +H +LG + DTGF+ R+R + + Sbjct: 262 QQPDERAQLLRRIGLELERLANHTGDLGA----IAGDTGFLPTASWNGRIRGDFLNITAS 317 Query: 320 LIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG 379 L G+R GL GGV D+ + L VR D V+++L + R G Sbjct: 318 LCGNRFGRGLLRPGGVAYDLAPSECADMLARVRAAWHDARGSVDVMLDAVTVRNRLADTG 377 Query: 380 ILDRQIARDL----------------RFDHPYADY---GNIPKTLFTFTGGDVFSRVMVR 420 +++ AR+L RF P +D G P+ T GDV +R +VR Sbjct: 378 MVEPATARELGLVGVAARACGLDVDARFHMPLSDLPCEGCAPRLEIT---GDVMARTLVR 434 Query: 421 VKETFDSLAMLEFALDNMPDTP-------------------------LLTEGFSYK---P 452 +E DSL +LEF L + P E S+ P Sbjct: 435 SRELDDSLRLLEFDLARLGALPHTKNAATAESTVSAPATAAATNTSGTAAEAASFDALPP 494 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 A+ VE RGE H + +L ++ ++ NW L LRGN +SD PL Sbjct: 495 DTLAVALVEGWRGEVCHVGLTDSRGRLLVYKVVDPSFHNWAGLAMALRGNQISDFPLCNK 554 Query: 513 SLDPCYSCTD 522 S + Y D Sbjct: 555 SFNLSYCGHD 564 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 123/452 (27%), Positives = 190/452 (42%), Gaps = 48/452 (10%) Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP--DQRRLVLP-----DDWPE-DMHP 150 + EFPS+ + P EREI + G+ VG P R V D W D P Sbjct: 74 CNGTEFPSIAVQCPQLQLFEREIAEQCGIRFVGHPWFKPVRFVHSAVRGHDAWGRADDQP 133 Query: 151 LRKDAMDY-RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 ++ M+Y R+ E + + VGP+H EPGHFR GEQ+ Sbjct: 134 IQVGVMEYYRVEGEEIHE----------------VAVGPVHAGVIEPGHFRFQCHGEQVF 177 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 + L Y HRG+E+L + + + + G H +AY +E+ P Sbjct: 178 HLEISLGYQHRGIEQLL-LNGPHPQTLRQMEAIAGDTSIGHGLAYCMVLESLSKSHPPAT 236 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 AH +R I LE+ERL +H +LG VG+ R+R + M+ + GSR GL Sbjct: 237 AHALRGIALELERLANHTGDLGAIAGDVGYLPTASFCGRIRGDFLNMSAFICGSRFGRGL 296 Query: 330 NLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA--- 386 GG + + QR + + RA+++ +E+L TP++ R +G G++ + A Sbjct: 297 LKPGGTVFGLDQAQREELQNRLATGRAELTSAIELLWNTPSVMSRLEGTGVVSAESAVEM 356 Query: 387 -------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 RD+R D+P+ Y + T GDV SR VR +E S L+F Sbjct: 357 GLVGPAARACGLKRDVRSDYPFGIYRMAQVPIATAHHGDVCSRSSVRWEECQKS---LDF 413 Query: 434 ALDNMPDTPLLTEGFSYKP---HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 ++ + P KP + E RGE H ++ + +++ ++ Sbjct: 414 CVEQLRQLPKGAHAAELKPLQGDQLTVALTEGWRGEICHLAITDSAGRFRQYKITDPSFH 473 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 NW L LR +SD PL S + Y D Sbjct: 474 NWQGLAMALRNEQISDFPLCNKSFNLSYCGFD 505 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 106/376 (28%), Positives = 177/376 (47%), Gaps = 22/376 (5%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 +D E F++ S+ V+ +GP H ++ L +DGE+++ + + Y+HRG+EK+ Sbjct: 10 SDLENKTFLD---SNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKI 66 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 AE R Y + DR+ + ++ + Y +VE + ++ P RA +R IL E+ RL S Sbjct: 67 AENRT-YVQFNPYVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLAS 125 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 H++ LG +G T FR RE+ + + E G+R T IGG + + Sbjct: 126 HMVWLGTHALDIGALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEK 185 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DL 389 L ++ + E +L QRT+GIGIL+ + DL Sbjct: 186 DVLDYCDKLGPRIDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDL 245 Query: 390 RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE--G 447 R PYA Y + + T GD F R MVR++E S+ +L A++ +P P + + Sbjct: 246 RKAQPYAAYDQVDFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPK 305 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 P +EAP+GE ++ + + + +R R R ++ N L M+RG ++D Sbjct: 306 VLKPPVGRIYHSIEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIADV 365 Query: 508 PLIIGSLDPCYSCTDR 523 +IG+LD DR Sbjct: 366 VAVIGTLDIVLGEVDR 381 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 128/486 (26%), Positives = 208/486 (42%), Gaps = 48/486 (9%) Query: 60 LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGER 119 L LFG L + V A+ ++ A+ ++++A + +T + PAA ER Sbjct: 37 LLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATAQ-RGEHYRCLTAQHPAAQIFER 94 Query: 120 EIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS 179 E+ + GL P D HP K R E YPF Sbjct: 95 ELWEQTGLFP-----------------DDHPWLKPV---RFEGERQQRMLEYPFFKVRGQ 134 Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 + + VGP+H + EPGHFR GE + + +L Y HRG+E L R + ++T L Sbjct: 135 EVHEVGVGPIHASVIEPGHFRFMCLGENVHHLEIQLGYQHRGVEGLLLRRPVW-QLTPLV 193 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 + +CG A++ Y ++E V R+I LE+ER+ HL LG + F Sbjct: 194 ESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAIALEMERIAMHLATLGGMATDIAF 253 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL-KLVREMRADV 358 G + R+R + ++ + G+R +G I + L E Q L + +R D Sbjct: 254 LQGGATYGRLRTAIINASQRVCGNR--FGRGWIRPGQAKPLSEALQQDLTRTLRAFAPDF 311 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDL------------RFDH----PYADYGNIP 402 +++ +++LA +++ R G G + +Q A DL DH P A YG+ P Sbjct: 312 TQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVARASGVALDHRTQWPGAAYGHAP 371 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLA-MLEFALDNMPDTPLLTEGFSYKP-----HAFA 456 + T GD ++R+ +R++E SLA +L+ D + + S P A Sbjct: 372 LPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTLNLSQAGQAQSSTPAALQAEALC 431 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 + VE RG + +L ++ + + ANW L + +R N +SD P+ S D Sbjct: 432 VSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFGLAFAMRDNAISDFPICNKSFDL 491 Query: 517 CYSCTD 522 Y D Sbjct: 492 SYCGND 497 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/396 (28%), Positives = 180/396 (45%), Gaps = 51/396 (12%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGYN 233 E S+ + VGP H ++ G R+ VD GEQI+ + Y+H G EK E R Y Sbjct: 23 ELKSEVMTLNVGPQHPSTH--GVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRT-YT 79 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + + R+ + F+H +AY SVE +G +VP RA IR +L E+ R+ SHL+ LG Sbjct: 80 QCITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLVFLGTG 139 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 G T F FR RE + + E + G R + IGG++ D+ E + K + + Sbjct: 140 LLDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEVKKFIAQ 199 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 M A + E + +P +R +G+ ++ ++A D+R +PYA Sbjct: 200 MPARIDEYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDVRKAYPYAG 259 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD-----------------NMPD 440 Y + TGGDVF R+++R+ E +S+ ++ A++ ++P Sbjct: 260 YETYDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGPGPIRDPNPQISLPP 319 Query: 441 TPLLTEGFSYKPHAFAL---GF----------VEAPRGEDVHWSMLGDNQKLFRWRCRAA 487 LL + F L GF E+ RGE ++ + +R + RA Sbjct: 320 RHLLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIVSDGGSMPYRVKVRAP 379 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ N L Y +G ++D ++I SLDP DR Sbjct: 380 SFVNLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 138 bits (348), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 169/385 (43%), Gaps = 49/385 (12%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H + L +DGE IV A + Y+H G EKL E + +N+ + DR+ I Sbjct: 26 GPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED-LDFNQYVTIVDRMNYIS 84 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 FA+ A+ +VE +GIE+ R +R+IL E+ R+ HLL +G + +G TGF+ Sbjct: 85 PFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALDLGALTGFLYA 144 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 F REK + E G R +GG+ D+ + V+ R +++ +L Sbjct: 145 FNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRKVHADICRLLN 204 Query: 367 ATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKT--LFTF 408 RT+GIG+L ++ + RDLR D PY Y + + Sbjct: 205 RNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKELSGAFKIVCG 264 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL----------------------LTE 446 GGD ++R +VR+ E +S ++ A++N+P P+ L + Sbjct: 265 KGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKNATYRSIEGLIQ 324 Query: 447 GFSY--------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 F P G E GE + + K FR R R ++ ++ V M Sbjct: 325 HFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPSFIHFAVFPMM 384 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 + G+ +SD P ++GSL+ + DR Sbjct: 385 MEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 130/465 (27%), Positives = 207/465 (44%), Gaps = 50/465 (10%) Query: 101 SREFP---SVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 SR+ P + P A W ERE D+ G+ P+ R++LPD W HPL +D Sbjct: 106 SRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHPNLERILLPDTW--QGHPL---GLD 160 Query: 158 Y-RLRPEPTT-DSETYPFINEG------NSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 Y + +P+ T D P EG +SD + +GP H + H +DGEQ+ Sbjct: 161 YNQNKPQIVTFDEHKNPL--EGHEQAADDSDTMFLNIGPHHPATHGVLHVETVLDGEQVA 218 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV-CGICGFAHSVAYTNSVENALGIEVPQ 268 D + + Y+HR E++A+ +++ DR G G + AY + E+ I+VP+ Sbjct: 219 DVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGILNEWAYARTAEDLADIDVPE 278 Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCH--FVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 A +R++ E+ R+ H+L LG C + F FM R RE + E L G R Sbjct: 279 YAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAMRDREVVQNILEDLTGQRMM 338 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVR----EMRADVSELVEMLLATPNMEQRTQGIGILD 382 +GGV DI E R + + VR E+ + E +++ + + RT G+LD Sbjct: 339 LNYLRLGGVVWDI-PEPRAEFFESVRDFLDELPERLDEYSDLITSNEIFQARTVNTGVLD 397 Query: 383 RQIARD----------------LRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFD 426 + A+D +R D PY Y + + T GGD +SR++VR++E Sbjct: 398 YETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTEDGGDNYSRLLVRMEEVEQ 457 Query: 427 SLAMLEFALDNMPDTPLLTEGF------SYKPHAFALGF--VEAPRGEDVHWSMLGDNQK 478 S ++E +D + P + KP A + VE +GE + +K Sbjct: 458 SARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTVEGAKGELGVYIRADGTEK 517 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R++ R+ ++N L+ M G + D +GSLD DR Sbjct: 518 PGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGEVDR 562 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 104/390 (26%), Positives = 175/390 (44%), Gaps = 45/390 (11%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 N+ ++ +GP H ++ L +DGE + D + Y+HRG EKLAE+ Y ++ Sbjct: 16 NTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAES-FTYTQIFP 74 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L+DR+ +C ++++A+ +VE LGIE P RA IR ++ E+ R+ HLL G + Sbjct: 75 LTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDL 134 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G T + R RE M + E++ G+R +GGVR D+ + + Sbjct: 135 GAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREFCDIFPNR 194 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNI 401 + + +L RT+GIG++ + A DL R D PY Y + Sbjct: 195 IRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPYEIYDRL 254 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL------------------ 443 + T GD ++R RV E +S+ ++E +D MP+ P Sbjct: 255 DFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDMPTIAFPLDKDRVHC 314 Query: 444 ----LTEGFSYKPHAFAL------GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 L + F + F + +EAP+GE + + + K FR + RA ++ N Sbjct: 315 SMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAPSFVNLQ 374 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 L + ++D ++GSLDP + D+ Sbjct: 375 ALFGVTNARYLADMIAVLGSLDPVMAEVDK 404 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 105/352 (29%), Positives = 167/352 (47%), Gaps = 21/352 (5%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H ++ RL +DGE++V A+ + Y+HRG EKL E R Y ++ L++R Sbjct: 29 VLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVR-DYRQIIVLANRH 87 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + FA+ + +VE LG+EVP+RA +R L E+ R+ +HL+ LG +G T Sbjct: 88 DWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAITP 147 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FR RE T E + G R Y N +GG++ ++ + + E+R + +L Sbjct: 148 MFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLPDLD 207 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTLF 406 ++ RT G+G+L +AR DLR D PY Y + + Sbjct: 208 NLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQLDVPVV 267 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTE--GFSYKPHAFALGFVEA 462 T T GD SR V + + + SL + E LD + P+ T P + E Sbjct: 268 TRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLTGPINTRLPKVLKAPEGHTYAWTEN 327 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 P G + ++ + + +R + R A+YAN L +L G V D I+GS+ Sbjct: 328 PLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLVAILGSM 379 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 134 bits (338), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 105/365 (28%), Positives = 176/365 (48%), Gaps = 30/365 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 I VGP+H ++ G RL VD G+ I + + ++HRG+EKL E RM Y + +++ Sbjct: 28 INVGPIHPSTH--GVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM-YMQSPSYTEK 84 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG-FD 300 + + Y ++VE AL EV + A R I++E +R+ SHL +G C+ +G Sbjct: 85 LDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGALCNDIGQMF 144 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T FM FR R+ + E + GSR Y +GG+ R + + + KL + V Sbjct: 145 TMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTEYIEYKVKG 204 Query: 361 LVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKT 404 +++ +RT+GIG + ++ + D+R ++PY Y + Sbjct: 205 YKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYYAYDRLKFK 264 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP------DTPLLTEGFSYKPHAFALG 458 + T GD ++R +R +E F+S+ ++ ALD MP P+ G KP + Sbjct: 265 VPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIGPEAKPD-IVIN 323 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 E PRGE + + M+ D QK +R R R+ + + L ++ +G +D I G+LD Sbjct: 324 HHELPRGEGIIY-MVPDKQKPYRIRLRSPVFISLSALEHICKGAKFADLFSIAGTLDVVM 382 Query: 519 SCTDR 523 + DR Sbjct: 383 AEVDR 387 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 134 bits (337), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 103/356 (28%), Positives = 171/356 (48%), Gaps = 26/356 (7%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H ++ R+ +DGE++ A+ + Y+HRG EKL E R Y ++ L++R Sbjct: 32 VLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEAR-DYRQIIMLANRH 90 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + F++ + +VE LG+EVP+RA R++L E+ R+ +HL+ LG +G T Sbjct: 91 DWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLELGGITP 150 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FR RE+ + E + G R Y N +GG++ D+ + V +R+ + Sbjct: 151 VFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRSRMDVYE 210 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTL- 405 ++L RT+ +G+L IAR DLR D PY YG + TL Sbjct: 211 NLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGELRDTLK 270 Query: 406 -FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM------PDTPLLTEGFSYKPHAFALG 458 T T GD +R +++T +SL + + LD M P L + P Sbjct: 271 VVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQRLPKVLK-APEGHTYA 329 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 + E P G + ++ + + +R + R+A++ N L +L G V+D I+GSL Sbjct: 330 WTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLVADMVAILGSL 385 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 172/357 (48%), Gaps = 20/357 (5%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP H L +DGE IV D + Y+HR EK+AE R Y V L+DR+ Sbjct: 41 MGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRT-YPAVIPLTDRLDYF 99 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 + Y +VE+ LG+E+P RA IR ++ E+ R+ SHL ++G +G T + Sbjct: 100 ANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPILY 159 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS-ELVEM 364 FR RE+ E + G+R + IGGV+ D+ + + + V + + + +++ Sbjct: 160 AFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFIDL 219 Query: 365 LLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTF 408 + +RT+GI L ++ +A D+R D+PY+ Y + + T Sbjct: 220 IEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVVTD 279 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-GFSYK-PHAFALGFVEAPRGE 466 T GDV + VR+KE ++S+ ++ L+ MP+ ++ + G + P G VE PRGE Sbjct: 280 TAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRPPEGEGFGRVEGPRGE 339 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + +R R ++ N +L+ + G+ + D I+G +DP D+ Sbjct: 340 FAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPIMGLVDPVSGGWDK 396 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 115/395 (29%), Positives = 183/395 (46%), Gaps = 54/395 (13%) Query: 179 SDAR---VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 SD R V+ +GP H ++ RL ++GE I D + Y+HRG+EK+ E++ Y + Sbjct: 20 SDTRREMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKR-YAQF 78 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 T +DR + ++++ Y +VE LGIE P+RA R I+ E+ R+ SHL+ LG Sbjct: 79 TPWTDRTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGTHAL 138 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI---LKEQRLQTLKLVR 352 +G + + FR RE + + E G+R T + IGG R I L E LK+ Sbjct: 139 DIGALSMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDFLKVFP 198 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 + + + +L L A P RT+G+G+++ +A D+R PY Sbjct: 199 QRQREYEDL---LSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQPYL 255 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSY--KPH 453 Y I + T GDV+ R +VR++E SL ++E LD +P D PL +Y PH Sbjct: 256 LYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKLAESNYVIPPH 315 Query: 454 AFALGFVE--------------APRGE----------DVHWSMLGDNQKL-FRWRCRAAT 488 L E P+GE ++ + ++ D + +R R R Sbjct: 316 ETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPVPYRLRIRTPD 375 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + N L Y+ G ++D +IG++D DR Sbjct: 376 FVNLQSLPYLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 129/496 (26%), Positives = 213/496 (42%), Gaps = 68/496 (13%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 I+VK A++ P++T A W ERE DM+G+ G + R++L + +P HP Sbjct: 86 IIVKTW--AENETLPTLTNLWKGAKWAEREAWDMFGIKFEGHENLVRMLLWETYP--YHP 141 Query: 151 LRKD------------AMDYRLRPEPTTDSETYPFINEG-----------------NSDA 181 LRKD +++ LR E Y ++ + Sbjct: 142 LRKDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHTALPTMEDLEITQKKRMPVKTSQ 201 Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 V+ GPLH + F +DGE + D + +HRG+EKL E + + + +DR Sbjct: 202 IVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGEN-VNWQQFIPYTDR 260 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + I + AY + E LGIEVP++A IR+++ E+ R++SHLL LG +G T Sbjct: 261 MDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWLGTYALDLGALT 320 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 F+ FR REK M + E + G+R T IGGV D+ L++++ +++ Sbjct: 321 MFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGALDAIEHLIKDLPQRINDY 380 Query: 362 VEMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTL 405 +L R + + ++ + +AR D+R Y YG + + Sbjct: 381 ETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSGVPYDVRKIDKYDAYGEVEFDI 440 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM-------------PDTPLLT---EGFS 449 GD + R +VR++E S+ ++E + + PD L +G Sbjct: 441 PVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKDDPYFFQTPDEKKLKVTIDGRG 500 Query: 450 YK-PHAFALGFVEAPRGE-DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 K P + PRGE + D K R R R+ + N V + G ++DA Sbjct: 501 MKLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIRSGAFYNLQVFTKAIIGRPIADA 560 Query: 508 PLIIGSLDPCYSCTDR 523 ++ ++DP TDR Sbjct: 561 ITLLSTIDPVVGETDR 576 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 125/449 (27%), Positives = 212/449 (47%), Gaps = 55/449 (12%) Query: 101 SREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 S +P+++ VPAA W ER+I D++GL P+G P L+L PLR + + Sbjct: 62 STSYPALSAVVPAASWYERKIHDLFGLEPLGHPRLDPLIL---------PLR----EAQP 108 Query: 161 RPEPTTDSETYPFI-NEGNSDARV-------IPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 RP P S P +E +RV IP GP+ E + + GE I Sbjct: 109 RPLPGQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVG 168 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 R+F HRG+E+ E + ++ L++RV GI AH++A+ ++VE+ G+ R + Sbjct: 169 IRVFAKHRGIERRFED-LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRS 227 Query: 273 IRSILLEVERLHSHL-LNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNL 331 +R I E+ER+ +HL + L L+ G +F +E+ + + GSR G+ + Sbjct: 228 VRVIFAELERIANHLDVALKLA-DAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVV 286 Query: 332 IGGVRRD--ILKEQRLQTL-KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR- 387 GG+ + I L L ++RE+ AD ++L+ TP+ R +G G LD +AR Sbjct: 287 PGGIGCEPAISPNALLTRLDDILREVFAD----ADLLMQTPSFLDRLRGTGPLDPALARR 342 Query: 388 ---------------DLRFDHPYADYGNIPKTLFTFTG-GDVFSRVMVRVKETFDSLAML 431 D R+ PY +Y ++P+ +G GD +R+ +R E S ++ Sbjct: 343 HGALGPIGRASGFDDDDRWHRPYDEYSDLPQFPAVSSGSGDALARLEIRWSEIRSSAELI 402 Query: 432 EFALDNMPDTPLLTEGFSYKPHAF------ALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 A+ ++ T + P A +G+ EAP+GE V + + D+ ++ R R Sbjct: 403 RQAVAHIAALSAPTAEPADVPAAIDRISGRGIGWAEAPQGE-VVYVVECDDGRISRCAPR 461 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSL 514 +A++ N + + G+ ++D P I S Sbjct: 462 SASFHNLVLFHDVFAGDILTDFPFIEASF 490 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/418 (27%), Positives = 184/418 (44%), Gaps = 72/418 (17%) Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYV 218 +P T SE P NE ++ +GP H + G R V DGE I + + Y+ Sbjct: 51 KPPATQRSEVDPLENE-----MILNIGPQHPATH--GVLRCVVKMDGETIEKSVLDIGYL 103 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG+EKLAE + Y E +DR+ + ++++VA+ +VE IEVP+RA IR I+ Sbjct: 104 HRGIEKLAEHKT-YQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMS 162 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ R+ SH L LG+ G +GF+ F+ RE+ ++ + + G+R T + IGGV D Sbjct: 163 ELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVAND 222 Query: 339 -------------------------ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 +L + R+ + R E +E+ L PN+ Sbjct: 223 FSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNL-- 280 Query: 374 RTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 +G G+ D+R PY Y + T+ GD +R +R+ E S+ ++E Sbjct: 281 --RGSGV-----PYDVRRFEPYLKYDEVDFTIPVREEGDCLARYFLRLDEMKQSVRIIEQ 333 Query: 434 ALDNMPDTPLLT----EGFSYKPH------------------------AFALGFVEAPRG 465 LD M + P+ + E + K A + +E P+G Sbjct: 334 CLDRMTEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTVPPKGAHSYHAIEGPKG 393 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 E + + +R R A ++ N + +ML G V+D +IIGSLDP D+ Sbjct: 394 ELGFYLTSDGTGRPWRVRINAPSFTNLQAMEHMLEGEMVADTVVIIGSLDPVMGEADK 451 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 111/393 (28%), Positives = 175/393 (44%), Gaps = 49/393 (12%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 E ++ VI +GP H + G RL V DGE +VD L Y+HR MEK+AE+R Sbjct: 5 ETRAERMVINLGPHHPSMH--GVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQ 62 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + +++ F ++ N+ E G++VP+RA IR I+LE+ R+ SHLL LG Sbjct: 63 YLPYVTRWDYLATMFTEAIT-VNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPF 121 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G + F FR RE + E G R + +GGV D+ + Sbjct: 122 MADIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNY 181 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397 + + E ++ P R +G+G + R+ + DLR Y Sbjct: 182 LPPKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEI 241 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP---LLTEGFSYKPHA 454 Y + + TGGD +R +VR++E +S+ M+ ALD +P P L + S P + Sbjct: 242 YDELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKS 301 Query: 455 FALGF-----------------------VEAPRGEDVHWSMLGDNQKL-FRWRCRAATYA 490 GF VEAP+GE + ++GD+ +RW+ R + Sbjct: 302 EWNGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGE-LGVYLIGDDSTFPWRWKIRPPGFI 360 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 N VL +++G ++D I+GS+D DR Sbjct: 361 NLAVLPKLVQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 132 bits (332), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 129/495 (26%), Positives = 213/495 (43%), Gaps = 61/495 (12%) Query: 78 YYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRR 137 Y+ + G + W+ V D ++ E S+TP +P+A W E E +G+ G PD R Sbjct: 67 YFLEDLFGKKNVWLKVDIERDLENCEIDSITPLMPSANWHELEAYSTFGVKFKGHPDLRY 126 Query: 138 LVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE----------------GNSDA 181 ++ D+ P RKD D++ E + IN+ G+ + Sbjct: 127 FLISRDYYGKF-PFRKD-FDWKAHEENLIQN-----INDITEEYFEEYEEHEEKLGHEGS 179 Query: 182 R-VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 R V+ GP H S P +++ +GE I + + YV R +E LAE R + + Sbjct: 180 RTVLNWGPTHPASG-PIRLKVYTNGENIEKIEPDIGYVWRALEHLAE-RKDFIGTIVAVE 237 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+C + + Y+ +VE G E+ + A +R IL E R+ SHL++LG +G Sbjct: 238 RICFMDNPNPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMGLH 297 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK-----EQRLQTLKLVREMR 355 T M +RE + + E G+R GGVR + E + +K + + Sbjct: 298 TFMMWCLDIREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFEDTK 357 Query: 356 ADVSELVEMLLATPNMEQRTQGIGI----------LDRQIAR------DLRFDHPYADYG 399 AD++++ + P M R +G G+ L IAR D+R D PYA Y Sbjct: 358 ADITDI---FMKNPLMNTRAKGNGVFTLDDVAEYYLAGPIARASGAKIDVRIDEPYAAYD 414 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM----------PDTPLLTEGFS 449 + T GD R+ + KE ++ +++ A+ + P L + Sbjct: 415 KLEMEYATCENGDARDRLYIIFKELEQAMDLIKQAMAKIEEGIEAGEMDPKKDHLVKMPK 474 Query: 450 YKPHAFALGFVEAPRGEDV-HWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 P A+ +E RGE + H + +R + +A + + +L +LRG T+SD P Sbjct: 475 RMPAGEAVSRIEWARGEILMHLVTQEKSTSPYRLKIKAPSVNHTMMLDKLLRGKTLSDIP 534 Query: 509 LIIGSLDPCYSCTDR 523 L+ GS+ C DR Sbjct: 535 LLYGSMHICQGDLDR 549 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 105/387 (27%), Positives = 174/387 (44%), Gaps = 45/387 (11%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 G V+ VGP H S GH RLFV DG+ I + +VHRG+EKLAE R Y Sbjct: 26 GGERGLVVVVGPQHPGS---GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENR-PYWT 81 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 + L ++ + ++ T ++E ALG+E P RA +R+ + E+ R+ +HL +L L Sbjct: 82 LIPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLG 141 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 F+G T FM F + + + + G+R T + GGVRRD+ +E KL+R+ Sbjct: 142 IFLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKT 201 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADY 398 + + + L P + R +G+G++D + I D+R PY Y Sbjct: 202 EEKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAY 261 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------- 451 + + T GD +RV+VR +E + S+ ++ AL N+P+ ++ + +K Sbjct: 262 PELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRRE 321 Query: 452 ---------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 P +A A +H G Q+++R R ++ N + Sbjct: 322 GMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLWTTG-TQRVYRMRYVTPSWRNLKAMA 380 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +RG ++D P + S DR Sbjct: 381 EAMRGERLADMPAVYMSFGYFPPEADR 407 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 179/369 (48%), Gaps = 32/369 (8%) Query: 184 IPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 I +GP H ++ G FR+ V DGE IVD Y+HR E+LAE Y + +DR Sbjct: 9 INIGPQHPSTH--GVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVST-YIQSMPYTDR 65 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG-FD 300 + A++ A +VE GI VPQRA IR +++E+ R+ +H +G + +G + Sbjct: 66 LDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMGAWQ 125 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T M R REK + + E+ G+R GGV RD+ E Q +L++ + + E Sbjct: 126 TPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSFFDE 185 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 +L + RT +G+L +++A D+R PY+ Y + Sbjct: 186 FERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFD 245 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT------PLLTEGFSYK----PHA 454 + + GDV+ R ++R++E S +L+ ++ +PDT P + K P Sbjct: 246 IPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKALRPPPG 305 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 A +E+P+GE + + +++ +R++ RA ++ N L M RG+ V+D +I+GS+ Sbjct: 306 DAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVVVILGSI 365 Query: 515 DPCYSCTDR 523 D D+ Sbjct: 366 DIVMGEVDK 374 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 131 bits (330), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 170/358 (47%), Gaps = 24/358 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 ++ ++ VGP H ++ G FRL V DGE I +A + Y+HRG EKLAE + Y ++ Sbjct: 20 TEEMLLNVGPQHPSTH--GVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAEN-LTYTQII 76 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +DR+ + ++ ++VE +G+E+P+RA +R I +E+ R+ SHL+ G Sbjct: 77 PYTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLD 136 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G F+ FR RE + + L G+R T+ +GGV+ D + + V+ M+ Sbjct: 137 IGAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKK 196 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 +++ +++ R GIG D + A DLR D PY Y Sbjct: 197 ELNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDR 256 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS---YKPHAFAL 457 + T T GD +R +R+ E SL +LE AL+ P + P Sbjct: 257 FEFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRVIRPPAGETY 316 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 +E+PRGE + K +R + R ++ N +L +L+G +S+ I+GS+D Sbjct: 317 VRIESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMVAILGSID 374 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/385 (26%), Positives = 175/385 (45%), Gaps = 45/385 (11%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H ++ RL ++GE ++ D + Y+HRG+EKL E+ Y + +DR Sbjct: 26 VLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHR-YAQFVPWTDRT 84 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + ++++ Y +VE GI+ P+RA R I+ E+ R+ SHL+ LG +G + Sbjct: 85 DYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGTHALDIGALSV 144 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 + FR RE + + E G+R T + IGG R+I + + R + + Sbjct: 145 SLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCRYFPKAIRQYE 204 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 ++L P RT+G+G+++ +A D+R PY Y + + Sbjct: 205 DLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYLLYDRVEFEVP 264 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSY--KPHAFALGFVE-- 461 T GDV+ R +VR++E +L ++E L+ +P D PL+ Y PH + E Sbjct: 265 LGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLMAYESPYVIPPHKTVMTTAEDM 324 Query: 462 ------------APRGEDVH----------WSMLGDNQKL-FRWRCRAATYANWPVLRYM 498 P+GE H + ++ D + +R R R + N L YM Sbjct: 325 QRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPIPYRVRIRTPDFVNLQSLPYM 384 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 +G ++D +IG++D DR Sbjct: 385 AQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/366 (27%), Positives = 170/366 (46%), Gaps = 39/366 (10%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP H ++ L +DGE++V + + Y+HRG+EKLAE R Y +V +DR+ + Sbjct: 17 MGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIPYTDRLDYL 75 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG-LSCHFVGFDTGFM 304 G +++ Y +VE LG+EVP+RA +R I+ E+ RL SH++ + ++ G+ T + Sbjct: 76 AGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDLSGW-TAWF 134 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 FR RE+ + + E+ GSR T IGGV DI + ++ ++E+ + Sbjct: 135 PPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRMIAEMNGL 194 Query: 365 LLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTF 408 + + R QG+G +D + A DLR PY+ Y + T Sbjct: 195 ITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRFDFDIPTL 254 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 GD + R ++R+ E S ++ A++ +PD P+ + P L PRGE Sbjct: 255 NNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAK----VPRVLKL-----PRGEVY 305 Query: 469 HW-----SMLG------DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 H +LG K +R + ++ N L + G T+ D + I S+D Sbjct: 306 HQIEGAKGILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIV 365 Query: 518 YSCTDR 523 DR Sbjct: 366 LGEVDR 371 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 129 bits (324), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 164/357 (45%), Gaps = 20/357 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM-EKLAETRMGYNEVTFLSDRV 242 + +GP H P F L + +++VD +Y+ + RG E+L R+ + L R+ Sbjct: 5 LALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLVARI 62 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CG C FAHS+A+ ++E +V RA +R + E+ER +HL +G + Sbjct: 63 CGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGMEQR 122 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 ++S M L+ G R + GG+ RD+ +R + L ++ M AD+ + Sbjct: 123 GAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYRFI 182 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 + L+ + RT +G+L R A RD+R D PYA Y + Sbjct: 183 DRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQPI 242 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 GGDV++R+++ + E ++ + ++E AL +P+ + E P A VE PRG Sbjct: 243 IQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGPRGA 302 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +++ D +L R + + + R +L + D I+ SL C +C ++ Sbjct: 303 -IRYTLESDGVRLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAEQ 358 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 128 bits (321), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 129/485 (26%), Positives = 206/485 (42%), Gaps = 92/485 (18%) Query: 103 EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR-RLVLPDDWPEDMHPLRKDAMDYRLR 161 E PS+T +A + ERE+ D +G+ G + + +L D P+ PLRKD ++L Sbjct: 298 EIPSLTSLWESANYSERELHDFFGVKFKGNEGMKGKFLLAPDTPDT--PLRKD---FKLE 352 Query: 162 PEPTTDSETYPFI-----------------------------------NEGNSDARVIPV 186 E T E P +D V + Sbjct: 353 EEQYTIEEGVPLTPTITPPHYMPPSSSLSYSESELEDLKMPAYEDVLKEAEKNDEFVAFI 412 Query: 187 GPLHITSDEPGHFR--LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 GP H S GH R + + G+ I D YVHR MEK+AE R+ Y + L++R Sbjct: 413 GPHHSGS---GHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRL-YIQNVPLTERPNI 468 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 ++ Y ++ENALGIEVP+RA IR+I+ E+ R+ + ++G+ F+G TGFM Sbjct: 469 SDPINMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIGAFFYDMGIFPLFMGHSTGFM 528 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 F +RE + + + GSR T + GG+RRDI + +T K + + + + Sbjct: 529 YSFAIREMVLELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENI 588 Query: 365 LLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTF 408 + P + R + +G+L R+ + D+R PY Y + T Sbjct: 589 FVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYDKLDWEATTG 648 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALD---NMPDTPLLTE--------------GFSYK 451 GD R+ R++E S+ ++ A+D MP +++E G+ Y Sbjct: 649 DAGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVISEEILGDYKEASDDIRGYLYN 708 Query: 452 -------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML---RG 501 P EA RG V +S++ D + +R R T W LR ++ +G Sbjct: 709 VYGDLVLPKGEWTSVTEAARG-TVLYSIISDGESNVPYRVRIITPC-WMNLRGIIEASKG 766 Query: 502 NTVSD 506 V+D Sbjct: 767 ERVAD 771 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 164/349 (46%), Gaps = 24/349 (6%) Query: 187 GPLHITSDEPGHFRLF--VDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 GP H + GHFR+ +DG+ V A+ + Y HRG+EKL E R + + +R Sbjct: 11 GPQHPVT---GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPMI-ERFNM 66 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 S++YT +VE+ + E P RA +R+I+ E+ RL SHL NL L +G T FM Sbjct: 67 TDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVALGMYTPFM 126 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD-VSELVE 363 RE + + E+L G R Y + GGV +D+ + Q K ++ R + + + Sbjct: 127 WAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRNRLLKDYKK 186 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 + T ++ R + +GI+ ++ + +D+R PY Y + + T Sbjct: 187 FIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYNEVDFDVIT 246 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 GD +R++VR +E SL +LE + ++P T+ P VEA RGE Sbjct: 247 KNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTRVEAARGEV 306 Query: 468 VHWSMLGDNQKL-FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 + + + + +R + ++ N VL + G+ ++D I S+D Sbjct: 307 GVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSID 355 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 174/388 (44%), Gaps = 48/388 (12%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H + +GE++++ + Y+HRG+EKL+E++ Y L+DR+ Sbjct: 15 VLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT-YPGAMTLTDRL 73 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 I +++ Y +VE +GIE P RA IR+++ E+ RL SHLL L +G T Sbjct: 74 DYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHALDIGAMTV 133 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 F+ FR RE+ + E + G+R T IGGVR DI + + K + M V E Sbjct: 134 FLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIRVDEYE 193 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLF 406 +L RT+G+G++ + + D+R PY Y I + Sbjct: 194 TLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEIDFEVP 253 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-------------------- 446 GD + R + R++E S+ +++ ++ MP+ +L++ Sbjct: 254 LGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKIEPGDS 313 Query: 447 ---GF--------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 GF P +EAP+GE + + + + +R R RA ++ + + Sbjct: 314 LWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFIHISAI 373 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + G+ ++D IIG+LD DR Sbjct: 374 PKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 112/412 (27%), Positives = 174/412 (42%), Gaps = 73/412 (17%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H + L +DGE +V AD + +HRG EKLAE++ +N+ DR+ Sbjct: 27 VMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESK-PFNQSIGYMDRL 85 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + + AY ++E LGIE P RA IR++ E+ R+ +HL+N+G +G Sbjct: 86 DYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGTGALDLGAMAV 145 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI------LKEQRLQTLKLVREMRA 356 + FR RE+ M E + G+R GGV R++ KE R +T K +R + A Sbjct: 146 MLYAFREREELMDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKESRWKTGKQLRRLNA 205 Query: 357 D-------------------VSELVEMLLATPNMEQRTQGIGILDRQ------------- 384 + E +L +QRT GIG++ Q Sbjct: 206 AREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQQAMEWGMTGVMLR 265 Query: 385 ---IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 +A DLR PYA Y + + T GD + R + RV E S ++ +D + Sbjct: 266 GSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSNRIIRQCVDWLRAN 325 Query: 442 P------------------------------LLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 P L +EG+ P VEAP+GE + Sbjct: 326 PGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQV-PAGETYAAVEAPKGEFGCYL 384 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + K FR RA +A+ L ++RG+ ++D +IG+ D + DR Sbjct: 385 ISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFGEVDR 436 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 104/387 (26%), Positives = 171/387 (44%), Gaps = 49/387 (12%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 NE S+ V+ +GP H + L +DGE+I++A+ + Y+HR EK+AE R Y + Sbjct: 21 NEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHRAFEKIAENRPFY-Q 79 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +T L+DR+ +++ + ++E LGIEVP+RA +R I++E+ R+ H++ + Sbjct: 80 ITPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMELARITDHIICNSILG 139 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 G TGF+ F+ REK + E + G+R T + IGG RD E + K + E Sbjct: 140 VDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPEAFRKLDKFLEEF 199 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADY 398 E + RT +G + + A D+R HPY+ Y Sbjct: 200 PPAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAGVDYDVRVAHPYSSY 259 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP------------------D 440 + + GD + R VR E ++SL+++ AL+ MP D Sbjct: 260 EDFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEYHAEVPDYYLPPKED 319 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKL------------FRWRCRAAT 488 E Y +G V P E H ++ G N +L +R R Sbjct: 320 VYNSMESLIYH-FKIVMGEVPVPVSEIYH-AVEGGNGELGFYLATDGSRTPYRLHFRRPC 377 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLD 515 + + M++G +SDA +I+ SL+ Sbjct: 378 FIYYQAFPEMIKGALLSDAIIILSSLN 404 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 173/361 (47%), Gaps = 26/361 (7%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H ++V+G+ +V A ++HRG EKL E R+ Y + + R+C Sbjct: 9 GPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIP-RICVPE 67 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + + Y +VE I+VP+RA IR I+LE+ R+ +HL + +G TG Sbjct: 68 PDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIGLYTGSFWG 127 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 R++ + + E L G+R + + GGVR+D+ + L+ + + + + + +++L Sbjct: 128 TADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDYEKLIL 187 Query: 367 ATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTG 410 + R +GI LDR+ A D+R PY Y + + T Sbjct: 188 KNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPFSTD 247 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMP----DTPLLTEGFSYK---PHAFALGFVEAP 463 GD F+RV ++ +E F S+ +++ AL+ MP +TP ++EG + + P A +E+ Sbjct: 248 GDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTP-ISEGSALRFRVPKGQAYVHIEST 306 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPV-LRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RGE ++ + +K +R R A+Y + + L G + D P+ + ++D C D Sbjct: 307 RGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMDVCAPEVD 366 Query: 523 R 523 R Sbjct: 367 R 367 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 125 bits (314), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 167/392 (42%), Gaps = 50/392 (12%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 +++ + VGP H ++ G RL VD GE + + Y+H G EK E R V Sbjct: 25 HTEVMSLNVGPQHPSTH--GVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGV 82 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 T+ + R + F H +AY SVE + +VP RA IR IL E+ R+HSHL+ +G Sbjct: 83 TY-APRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLL 141 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T F FR +E + + E G R G +GG+ RD+ ++ + + +M Sbjct: 142 DLGALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQME 201 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYG 399 V E + P R +G+G++ +A DL R HPY Y Sbjct: 202 RGVDEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYE 261 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM-------PDT----------- 441 + + T GD +R +R+ E +S+ ++ AL + P+ Sbjct: 262 AYDFNVISSTDGDSLARFTMRLLEFSESIKIIRQALARLKPGLIKDPNRKISLPPRHELE 321 Query: 442 ----------PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 L+TEGF + P VE RGE ++ + +R + RA ++ N Sbjct: 322 TSMEAVIHHFKLVTEGF-HPPTGEVYVPVEGARGEVGYYIVSDGGSVPYRVKIRAPSFVN 380 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 L Y G +D I+ ++DP DR Sbjct: 381 LQALEYACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 125 bits (314), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 172/391 (43%), Gaps = 49/391 (12%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 D ++ +GP H + G RL V DGE +VD + L Y+HRGMEK+AE R + Sbjct: 7 GKDLMIVNMGPHHPSMH--GVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYL 64 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +++ F ++ N E I+VP+RA IR I+LE+ R+ SHLL LG Sbjct: 65 PYVTRWDYLATMFTEAIT-VNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMA 123 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T F FR RE + E G R + IGG+ D+ + L Sbjct: 124 DIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFL 183 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 +V E +++ P +R +G+GI+ + I DLR Y Y Sbjct: 184 TEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYD 243 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP---LLTEGF-------- 448 + GD +R +VR+ E +S+ +++ AL+ +P P L + GF Sbjct: 244 EFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEW 303 Query: 449 --------SYKPH-AFALGF------VEAPRGEDVHWSMLGDNQKL-FRWRCRAATYANW 492 S KP F L VEAP+GE + ++GD +RW+ R + N Sbjct: 304 NDFEYRFISKKPSPTFELSKQELYVRVEAPKGE-LGIFLIGDQSGFPWRWKIRPPGFINL 362 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L +++ ++D I+GS+D DR Sbjct: 363 QILPELVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 124 bits (312), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 99/397 (24%), Positives = 172/397 (43%), Gaps = 48/397 (12%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + E + + +GP H + +L ++GE +V A+ ++H G+EK AE + +N Sbjct: 9 LEEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HLTWN 67 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLG 291 + T + DR+ + +++ Y +VE LGIE +P++A R ILLE+ R+ SHL+ LG Sbjct: 68 QATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLG 127 Query: 292 LS-CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 + T F +R++ + + E G R +GG+ D+ + Sbjct: 128 TGGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDF 187 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP 394 ++ + EL +++L P R +G+ ++ + A D+R +P Sbjct: 188 LKVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYP 247 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--------------- 439 Y Y N + +T GD +SRV + E F+SL ++ ALDN+P Sbjct: 248 YLGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKLVLP 307 Query: 440 -------DTPLLTEGFSYKPHAFALGF------VEAPRGEDVHWSMLGDNQKLFRWRCRA 486 L F H F + +E+PRGE + + K R R R Sbjct: 308 PKQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRVRP 367 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ L +L G+ +SD I ++DP + DR Sbjct: 368 PSFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 124 bits (310), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/360 (25%), Positives = 165/360 (45%), Gaps = 25/360 (6%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H + ++ +DGE + D + + Y+HR EK+ E + + + + DR+ + Sbjct: 12 GPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYF-DRMDYVA 70 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + Y + E L +E P RA IR ++ E+ R+ SHL+ LG +G T F Sbjct: 71 AMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPFFYC 130 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 F+ REK + + + GSR+ IGGV +D+ E + + E +++ + + + Sbjct: 131 FKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKELNMIANLFV 190 Query: 367 ATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTG 410 RT+G+GIL +++A D+R PY Y + + Sbjct: 191 KNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPVSFK 250 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFAL-------GFVEAP 463 GD +R +VR++E S+ +++ + +P P + + KP L E+P Sbjct: 251 GDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQK-AKKPLMIRLRGQGEVYARTESP 309 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +GE + + + + +R R R+ T+ N VL + +G ++D I GS+D + DR Sbjct: 310 KGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGSIDLVFGEVDR 369 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/366 (25%), Positives = 157/366 (42%), Gaps = 20/366 (5%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM-EKLAETRMGY 232 + E S + V+P+GP H P L V+GEQI D ++R Y +RG+ E+L TR Sbjct: 5 LCEALSLSYVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTI 62 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + L +C AHS+ + ++E L I +RA +R + EVER HL + Sbjct: 63 PQGLHLVSHICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKE 122 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 +G ++ + + L G+ + GGVR+D+ ++ R Sbjct: 123 VLTILGLQRDAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFR 182 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYA 396 + + V+ + + +R G+G+L R+ A D R D Y Sbjct: 183 RLERLMYRFVDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYG 242 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFA 456 Y P + T GDV++R+++ E F+SL + L N+P P Sbjct: 243 AYAQFPPSRVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSV 302 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 +E+ RG + +++ + KL R A + + R +L G + DAPLII S Sbjct: 303 TSNIESARG-TLRYTVQSNGVKLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASA 361 Query: 517 CYSCTD 522 C +C++ Sbjct: 362 CTACSE 367 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 174/386 (45%), Gaps = 47/386 (12%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + +GP H + L ++GE I + Y+HRG+EKL+E + Y + ++DR+ Sbjct: 13 VNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LTYVQSLPITDRMD 71 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + ++V + +VE +GI++P+RA IR+I+ E+ R+ SHL+ + +G T F Sbjct: 72 YLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIATHALDIGAMTVF 131 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + R RE + + E++ G+R T +GGVR D+ E +T K + E V E Sbjct: 132 LYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEEFPRKVEEYET 191 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 ++ +RT+G+G++ + + D+R PY Y + + Sbjct: 192 LIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDAYDKVDFEVPL 251 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF------------------- 448 GD++ R R+ E S +++ ++ +PD +L E Sbjct: 252 GKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPESPLKIDKKDIIF 311 Query: 449 -----SYKPHAFALGF------VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 + F F VEAPRGE + + ++ K +R R RA ++ + VL Sbjct: 312 DVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRAPSFVHAGVLPK 371 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 + G+ V+D IGS+D DR Sbjct: 372 LCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 123 bits (309), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 121/426 (28%), Positives = 187/426 (43%), Gaps = 55/426 (12%) Query: 105 PSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDA-MDYRLRPE 163 PS+ P W ERE D G+ G P+ L+ P LR D D R P Sbjct: 65 PSIATIWPLLGWYERETADHRGIAFSGQPEPFSLIAP---------LRADEEADLRRLPG 115 Query: 164 PTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGME 223 + D+ +V+P GP+ E F F GE I+ LF HRGME Sbjct: 116 LSGDA------------VQVLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGME 163 Query: 224 -----KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 + ET + L++RV G+ AH++AY ++E A + VP RA R I+ Sbjct: 164 DRFVDQTPETGL------VLAERVSGVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVA 217 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ERL++HL LG + + E+ + + GSR G+ GG+RR+ Sbjct: 218 ELERLYNHLHYLGHLADTTTLKVAHAEGALLAERVKQIGARVTGSRFLRGVIAPGGLRRE 277 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------ 386 + E L +RA + + L A+ + R G+L R++A Sbjct: 278 LRVEGLAGALD---ALRAPIRRYIARLDASESHFDRLATTGVLPREVAFDQGATGPVARA 334 Query: 387 ----RDLRFDHPYADYGNIPKTLFTFTG--GDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 RDLR DH YA Y + L TG GD +R VR+ E ++L M+ A+ P Sbjct: 335 SGLDRDLRRDHAYAAYDDPDLALAVATGTDGDAHARARVRIAEIENALLMIVRAIALTPG 394 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 + + A A+G+ E+PRG ++ +G + +L R + ++ +++NW V Y + Sbjct: 395 GAIRVA-CAPAAGAEAMGWAESPRGTLIYAVHVGPDGRLARVKIKSPSFSNWRVFPYTVH 453 Query: 501 GNTVSD 506 G + D Sbjct: 454 GTNMMD 459 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 104/380 (27%), Positives = 179/380 (47%), Gaps = 41/380 (10%) Query: 179 SDARVIPV--GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 S A+V+ V GP H + F+L +DGE+++D D ++HRG EK+ E R ++ Sbjct: 2 SKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRR-WDMDL 60 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +S R+C + YT+++E GIE P++A +R I+ E RL SHLL + Sbjct: 61 VMSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGP 120 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 + RE+ + + + G R + GGVR DI + + +TLK+++ ++ Sbjct: 121 IAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKP 180 Query: 357 DVSELVEMLLATPNMEQRTQGIGILD----------------RQIARDLRFDHPYADYGN 400 + ++ + P E+R + +G L + DLR Y YG Sbjct: 181 LIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYGE 240 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG-FSYK-----PHA 454 I + + GD + R +VR++E + S+ ++ A++ MP TEG + Y+ P Sbjct: 241 IDFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMP-----TEGPYRYRLPATIPAG 295 Query: 455 FALGFVEAPRGEDVHWSM--------LGDNQKLFRWRCRAATYANW-PVLRYMLRGN--T 503 +G VE+ RGE + + +R + R T A+ VL++++ T Sbjct: 296 EGIGRVESARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEIT 355 Query: 504 VSDAPLIIGSLDPCYSCTDR 523 ++D P++IGS DPC DR Sbjct: 356 IADLPVLIGSFDPCPPDIDR 375 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 121 bits (303), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 83/280 (29%), Positives = 137/280 (48%), Gaps = 19/280 (6%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H ++ L ++GE +V+A + Y+H G+EK E R VTF++ R+ Sbjct: 40 VVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVT-RM 98 Query: 243 CGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 + F + AY VE LGI E+P+R + IR +++E+ R+ SHL+ L +G Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T FR RE +T+ E + G R GGV +D+ + + ++++R + E Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218 Query: 361 LVEMLLATPNMEQRTQGIGILD----------------RQIARDLRFDHPYADYGNIPKT 404 + E+L + RTQG+G LD + DLR PY Y + Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPYCGYQHYEFD 278 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 + T D + R M+RVKE ++S+ ++E LD + P + Sbjct: 279 VITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTM 318 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 103/397 (25%), Positives = 178/397 (44%), Gaps = 51/397 (12%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGY 232 +E + V+ +GP H ++ G RL V+ GE +V + ++H G+EK ET+ Y Sbjct: 29 DENGEQSMVLSMGPQHPSTH--GVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKT-Y 85 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + L+DR+ + ++++ Y ++E + +VP+RA T+R +LLE+ R++SHL+ LG Sbjct: 86 TKSIVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGT 145 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 + + F R RE + + E+L G+R +GG+ DI + + Sbjct: 146 HALDLAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLT 205 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 V E ++L +QRT+G+G+++ A DLR PY+ Sbjct: 206 HFLPKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYS 265 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD---NMPDTPLLTEGFSYKP- 452 Y + GD++ R RV+E +S+ + A++ M P +TE P Sbjct: 266 GYETYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHGQPYVTENRKVAPP 325 Query: 453 -------------HAFAL---GF----------VEAPRGEDVHWSMLGDNQKLFRWRCRA 486 H F L GF +E+PRGE + + K +R RA Sbjct: 326 PKSEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVSDGTPKPWRVHFRA 385 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ N L ++ +G ++D +I S+DP DR Sbjct: 386 PSFINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 120 bits (302), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 99/371 (26%), Positives = 158/371 (42%), Gaps = 20/371 (5%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 ++PF + + VGP+H EPG FR GEQ+ + L Y HRG+E+ R Sbjct: 126 SHPFYKIEGKEVHEVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERRLLER 185 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 +T L + + G AH+ A+ +++E+ G + R++ LE+ER+ HL Sbjct: 186 -DPRSLTPLIETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAMHLST 244 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 L VGF G + R+R ++ L GSR G GGVR + E Sbjct: 245 LAGMAADVGFLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALPDIRA 304 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDH 393 + ++AD+ + + L ++ R + G L AR+L R Sbjct: 305 NLDLLQADLPIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDARHLV 364 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLE--FALDNMPDTPLLTEGFSYK 451 + Y +P GD ++R +R+ E SL+ + AL + P + G Sbjct: 365 EHGAYSVVPIQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRPSIG-ELA 423 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P A+ VE RGE VH G + ++ ++ + + NW L +RGN +SD P+ Sbjct: 424 PDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFPICN 483 Query: 512 GSLDPCYSCTD 522 S D Y D Sbjct: 484 KSFDLSYCGND 494 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/358 (28%), Positives = 167/358 (46%), Gaps = 31/358 (8%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ +GP H ++ L + GE+I A L Y+HRG+EKL E+R Y + +D++ Sbjct: 8 ILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQCLPYTDKL 66 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + +++A+ +VE GI VP RA +R I E+ R+ SHL+ +G + +G T Sbjct: 67 DYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLNDLGAATA 126 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE--QRLQT-LKLVREMRADVS 359 F+ FR REK + + +L+ G+R + +GGV D +E ++ Q L V EM + Sbjct: 127 FVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVPEMLEEYD 186 Query: 360 ELV--------EMLLATPNMEQRTQ-----GIGILDRQIARDLRFDHPYADYGNIPKTLF 406 L+ M +P + + G + +A D+R PY+ Y + + Sbjct: 187 NLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYDRLDFEVP 246 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK--------PHAFALG 458 T GD + R VR+KE +S ++ AL MP EG K P Sbjct: 247 VGTLGDDWDRYEVRLKEIGESAKIIRQALKEMP------EGSCRKVVSPNLRPPKGSVYH 300 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 VE RGE + + K +R R ++ N L + RG V+D+ ++ +LDP Sbjct: 301 RVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDP 358 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/379 (27%), Positives = 169/379 (44%), Gaps = 25/379 (6%) Query: 167 DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLA 226 D T F ++ ++ +GP H ++ L +DGE IV A+ L Y+HR EK+A Sbjct: 31 DGYTCRFEQGARPESLILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMA 90 Query: 227 ETRMGYNEVTFLSD--RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 E + F+ + RV + A + AY +VE GIE+P+RA +R I E+ R+ Sbjct: 91 EVK---TPAQFMPNMGRVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRIS 147 Query: 285 SHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 SHLL G +G T M F RE + + +L+ GSR TY GGV D Sbjct: 148 SHLLWWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFV 207 Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARD 388 + + +R+ + ++ + +R + +G++ + IA D Sbjct: 208 QGVRQFIPHLRSRLPMYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYD 267 Query: 389 LRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL---T 445 +R PY+ Y + +R MVR+ E SL ++E A++N+PD + Sbjct: 268 VRRAEPYSVYDRFDYEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHMHPKA 327 Query: 446 EGFSYK-PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 S+K P + VE RG+ W + +R + RA ++N + RG + Sbjct: 328 PKPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGFSNLALFAECARGTLL 387 Query: 505 SDAPLIIGSLDPCYSCTDR 523 +DA I+GSLD DR Sbjct: 388 ADAVAILGSLDMVIPEIDR 406 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 120/471 (25%), Positives = 216/471 (45%), Gaps = 50/471 (10%) Query: 79 YALSMEGAEKCWIVVKALVDAD--SREFP---SVTPRVPAAVWGEREIRDMYGLIPVGLP 133 YA EG + V ++ + S+E P ++ + P+A+W ER++ D +G++ Sbjct: 7 YAKEREGTFEIVTVFESETQRETISKENPVIRTLAKKHPSAIWFERKMSDDFGIVIEDAF 66 Query: 134 DQRRLVLPDDWPEDMHPLRK----DAMDYRLRPEPTTDSETYPFINEGNSDARV--IPVG 187 D+R L+ + +P+ +HP++K + +D+ +E P+ E V + VG Sbjct: 67 DKRPLLHQERFPKAIHPMQKAFQKNTLDF---------AEFTPYKYEAIQGDGVFQVSVG 117 Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 P+H EPGHF GE ++ + R FY +RG+EK+ E + E + +R+ G Sbjct: 118 PIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKT-LLEAKPVIERISGNES 176 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 A+ A+ + V A G+E+P + LLE+ER+ HL +LG + GF Sbjct: 177 IAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGAALAFAS 236 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA 367 ++ E + + + G R +G + I G +L L + ++ D++ ++ Sbjct: 237 KLSEDARRQLQNVTGHR--FGFDAI-GFENKVLDISSL--YDYLDGLQKDIAFFETWIMD 291 Query: 368 TPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTLFTFTGG 411 P++ R GIL + +AR D R + Y ++G + T G Sbjct: 292 IPSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLDRRSEPFYLEHGF---EIQTEQSG 348 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 DV +R VR++E +S+ M++ L+ DT + E + F E+ GE + + Sbjct: 349 DVAARFKVRLQEVKNSIVMMKHFLEE-DDTHIDIEKIKDGDYT---AFAESSLGE-LFMN 403 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + + R+ R ++ NW L M+ N ++D PLI S D Y+ D Sbjct: 404 IEIKDGVIERFFVRDPSFMNWQTLHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 118 bits (295), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 104/391 (26%), Positives = 175/391 (44%), Gaps = 52/391 (13%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ GP H ++ L + E IV A + Y+HRGMEK+AE M YNE +DR+ Sbjct: 24 ILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAEN-MIYNEFMPTTDRM 82 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 I A++ + +VE +G+EVP+RA IR +LLE+ RL SHL L + +G T Sbjct: 83 DYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWLATTALDIGAMTV 142 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 F+ FR RE M + E G+R T+ IGGV DI Q + ++ ++ + Sbjct: 143 FLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKTFLDKLPQNIKDYE 202 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLF 406 ++L R + +G++ ++ +A D+R + PY Y + + Sbjct: 203 DLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEEPYELYDEVEFRVP 262 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALD---------------------NMPDTPLLT 445 GD F+R + ++E +S +L +D + P ++T Sbjct: 263 YSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAHAPKYISAPKLDIMT 322 Query: 446 EGFSYKPHAFAL---------GFV----EAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 + +S H F L G V E+P+GE + +R + RA ++ + Sbjct: 323 QNYSLMQH-FVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYPYRLKLRAPSFWHT 381 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L +L G+ + D IIG+ + + DR Sbjct: 382 GILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 117 bits (294), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 103/394 (26%), Positives = 166/394 (42%), Gaps = 47/394 (11%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 E + D + +GP H ++ ++ ++GE + AD + Y+HRG EK+AE M YN+ Sbjct: 35 GEFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEKIAEN-MTYNQ 93 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +DR+ + A+++AY +VE G+ VP R IR I E+ R+ SHL+ LG Sbjct: 94 FVPYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFG 153 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 VG T + RE + E L G+R T IGGV RD+ + Sbjct: 154 LDVGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGTFCDKF 213 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADY 398 + E++ +L RT G+G++ ++ IA DLR D PY+ Y Sbjct: 214 LPALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDRPYSGY 273 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP---------------- 442 + T GD + R +VR +E S+ ++ + N P Sbjct: 274 EQYEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEAKKVFLPPKGK 333 Query: 443 -------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 L+TEG P E P+G + + +R + R+ ++ Sbjct: 334 VLSSMEELIQQFMLVTEG-PQMPAGEVYFEAENPKGILGFYIVSKGGGVPYRLKIRSPSF 392 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 N ++ + +G +SD I+GSLD DR Sbjct: 393 CNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 106/436 (24%), Positives = 187/436 (42%), Gaps = 45/436 (10%) Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDM--HPLRKDAMDYRLRPEPTTDSETYPFIN 175 EREI + YG++P P W + + H K A D YPF Sbjct: 96 EREIAEQYGIVPKNHP----------WLKSVRYHKNYKGAPDVFGNNYTAPIPGNYPFYE 145 Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 G + + VGP+H EPGHFR GE I+ + + Y HRG+EK + EV Sbjct: 146 VGGEEIHQVAVGPVHAGIIEPGHFRFNCIGETILSLEIQHGYQHRGIEK--QILNCKKEV 203 Query: 236 T-FLSDRVCGICGFAHSVAYTNSVE--NALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + + + G +S+ ++ ++E + E + + R +LLE+ER+ +H+ +G Sbjct: 204 LPLIIESIAGDTVIGNSICFSEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGG 263 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG--GVRRDILKEQRLQTLKL 350 VG+ + R+R + M L+ G+R +G + + G + + + +K Sbjct: 264 LAGDVGYIPTASYYGRIRGDFLNMFVLICGNR--FGRSSVRPFGAPFKLSDDHIKELIKR 321 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR------------DLRFD--HPYA 396 +++ +V ++ ++L P + R GI+D + A+ +++D ++ Sbjct: 322 FEQLKKEVIDVGNLMLDNPEVLGRFDYTGIVDTKTAKLIGLVGPAGRASGIKYDVRKSFS 381 Query: 397 DYGNIPK---TLFTFTGGDVFSRVMVRVKETFDS-------LAMLEFALDNMPDTPLLTE 446 NI L G V SR ET DS L + +F +++ D E Sbjct: 382 KAKNIYNRGIGLVARKDGAVSSRAKTYFYETLDSIEFCIELLKVADFQINDSADKLEKIE 441 Query: 447 GFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSD 506 KP++F + EA RGE H + +N + R++ + ++ NW L ++R + D Sbjct: 442 KTVLKPNSFIITMEEAWRGELSHCIITDENGNIIRYKIKDPSFHNWTALELVVRNEGIYD 501 Query: 507 APLIIGSLDPCYSCTD 522 PL S + Y D Sbjct: 502 FPLCNKSFNLSYCGFD 517 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/420 (25%), Positives = 173/420 (41%), Gaps = 64/420 (15%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 +D E + E ++ V+ +GP H ++ L ++GE + + + Y+H G+EK Sbjct: 65 SDWEQILGVGEEENERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKS 124 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERL 283 E R VTFL+ R + + AY SVE LGI +VP+RA IR +++E++R+ Sbjct: 125 CEYRTWTQAVTFLT-RADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRI 183 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 SHL+ L +G T + FR REK + + EL+ G R + GG+ +D+ Sbjct: 184 ASHLVWLATGGMELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGA 243 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IAR 387 + +M + E +L P + R + +LD + Sbjct: 244 ERAIRAFLADMPKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPW 303 Query: 388 DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----- 442 DLR PY Y + T GD F+R +VR++E +SL +++ LD + P Sbjct: 304 DLRKTMPYCGYETYEFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLRPGPVMVAD 363 Query: 443 ---------------------------------------LLTEGFSYKPHAFALGFVEAP 463 L+TEGF P +E+P Sbjct: 364 KKIAWPSQLSVGSDGTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRV-PAGQVYTQIESP 422 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE + + + FR R ++ N + + G V+D + + S+DP DR Sbjct: 423 RGELGYHVVSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 482 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 107/410 (26%), Positives = 174/410 (42%), Gaps = 45/410 (10%) Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 DYR R E + S P + + +GP H ++ L ++GE + D + Sbjct: 6 DYRRREESISYSAE-PAGMGLEQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIG 64 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 YVH G+EK AE + Y +V + +R+ + + ++ A+ +VE L ++VP+RA +R I Sbjct: 65 YVHTGIEKTAEQK-AYWKVIPVVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVI 123 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 +E+ R+ SHL+ LG SC +G + FR RE+ + + E+ G R +GGV Sbjct: 124 HMELNRIMSHLVWLGTSCIDLGAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVI 183 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI----------- 385 DI + + + + MR + +L QR + G +D + Sbjct: 184 EDIPRGWTERVKRFTKTMRERSEQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPLL 243 Query: 386 -----ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 DLR PY Y + + T GD + R VR E +S A+++ A+D +P+ Sbjct: 244 RATGNPWDLRKAAPYCSYDDFRFRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGLPE 303 Query: 441 TPLLTE--GFSYKP------------HAFAL---GF----------VEAPRGEDVHWSML 473 P +TE + P H F L GF +E+PRGE + Sbjct: 304 GPFITEDRKVALPPRHELATSMEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVRS 363 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + K R R ++ N R ++D + LDP DR Sbjct: 364 DGSSKPARVHMRDPSFVNLQATAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 162/382 (42%), Gaps = 51/382 (13%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 SD ++ +GP H S GH R+ + G+ IV+A YVHR +EKLAETR+ + + Sbjct: 38 KSDEYLVLIGPAHPGS---GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLAETRLFVHNI 94 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 + Y ++E ++VP RA +R I+ E+ R+ HL + G+ Sbjct: 95 PLVERPTIAESSIMDH-GYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDHLYDTGILAV 153 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 F+G TG+M F +RE + + G+R T + GVR D+ + + + Sbjct: 154 FLGHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRYIYNMTFFIE 213 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 + EL + P R + +G+L + + D R PYA Y Sbjct: 214 KKIDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNRRARPYAVYD 273 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-------- 451 + + GD +SR +VRV+E SL ++ A+ N+P+ P++ + Sbjct: 274 QLEWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMTRVPPKEREK 333 Query: 452 ------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 P A EA RG + +S++ D + +R R T + + Sbjct: 334 VAKDIRNYLFRLLIGLTLPEGEATTLTEAARG-TLLYSLVSDGKSNVPYRLRMITPSWYN 392 Query: 494 VLRYM--LRGNTVSDAPLIIGS 513 + +M LRG + D P I GS Sbjct: 393 LKPFMESLRGYRLMDLPAIYGS 414 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 115 bits (287), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/375 (25%), Positives = 167/375 (44%), Gaps = 48/375 (12%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP H + L +DGE+I+ ++ + Y+HR EK++E R + ++T L+DR+ Sbjct: 41 LGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISERR-NFTQITTLTDRMNYC 99 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 +++ + +VE +G EVP+R +R I++E+ R+ H++ G+ G TG Sbjct: 100 SAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVCNGVIAMDAGAITGLTY 159 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE--QRLQT-LKLVREMRADVSELV 362 F+ REK M E + G+R T + IGG RD + + LQT LK ++ ++ L Sbjct: 160 LFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQTWLKRFPKIWSEFCALN 219 Query: 363 E--------MLLATPNMEQRTQGIGILDRQ-----IARDLRFDHPYADYGNIPKTLFTFT 409 E + P +R G + D+R PY+ Y + + + Sbjct: 220 ERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVASPYSSYNDFDFIIPVGS 279 Query: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-----------------EGFSYKP 452 GD + R MVR +E ++SL ++ A N+PD P E Y Sbjct: 280 AGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEFYLPEKADVYNNMEALIYH- 338 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKL------------FRWRCRAATYANWPVLRYMLR 500 +G + P GE V+ + G N +L +R R + + M++ Sbjct: 339 FKIVMGETDVPIGE-VYNCVEGGNGELGFYLVSDGGRTPYRLHFRRPCFIYYQAYPEMIK 397 Query: 501 GNTVSDAPLIIGSLD 515 G +SDA + + S++ Sbjct: 398 GGMISDAVVTMCSMN 412 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 99/365 (27%), Positives = 167/365 (45%), Gaps = 30/365 (8%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP H ++VDG+ IV A +HRG EKL E R+ N + + R+C Sbjct: 8 LGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIP-RICVP 66 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 + + Y ++E GIEVP++AH IR I+LE+ R+ +HL++LG VG TG Sbjct: 67 EPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLYTGPNW 126 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK-LVREMRADVSELVEM 364 R+ + + E + G+R + + GGVR+D L+E+ ++ +K + + + E ++ Sbjct: 127 GLADRDLILDIFEEITGARIYHMYIVPGGVRKD-LREETIEKIKSFLDYLENRLPEYEDL 185 Query: 365 LLATPNMEQRTQGIGILDRQI-----------------ARDLRFDHPYADYGNIPKTLFT 407 +L ++RT+ +L ++ A D+R PYA Y + + T Sbjct: 186 ILKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQVEFYVPT 245 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-------PHAFALGFV 460 D ++RV + ET+ S+ ++ L+ MP + S P V Sbjct: 246 ANYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKGQVYTHV 305 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYAN--WPVLRYMLRGNTVSDAPLIIGSLDPCY 518 E RGE ++ + K +R R A+Y V +Y L G + DA L + ++ C Sbjct: 306 ECARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKY-LPGTRIEDAALWMDTMGVCP 364 Query: 519 SCTDR 523 DR Sbjct: 365 PEIDR 369 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 125/508 (24%), Positives = 216/508 (42%), Gaps = 68/508 (13%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 +++YY +E I + ++ + S+ +A WGERE D +G+ P+ Sbjct: 63 FSLYYIFRKISSENLCIYIDIDINQSVKSVESI---YKSANWGERECFDQFGVKFENHPN 119 Query: 135 QRRLVLPDDWPEDMHPLRKD--AMDYR-------LRPEPTTDSETYPFINEGNSDARV-- 183 +R++ D+ +PLRKD Y+ L E + + +E N + + Sbjct: 120 LKRILNHKDFQG--YPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDEFKTKY 177 Query: 184 --IPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 + +GP H + G R FV DGE+I+ + Y+HRG EK E Y ++ + Sbjct: 178 TFLNIGPSHPATH--GTIRNFVALDGEKIISCVTEIGYLHRGFEKACENH-SYAQIIPYT 234 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DR+ ++V Y +VE ALG+ +P R +R IL E+ R+ H + LG +G Sbjct: 235 DRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVDMGG 294 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL---KEQRLQTLKLVREMRA 356 T + + RE+ L G+R T IGG+ D KE+ L LK V + Sbjct: 295 LTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEKGVD 354 Query: 357 DVSELVE-------------MLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPK 403 D L+E + A + G + ++ DLR D PY Y + Sbjct: 355 DTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDSFDF 414 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP---------DTPLLTEGFSYKP-- 452 ++ + GD++ R+ VR E +S++++ A+ +P D L ++ Y Sbjct: 415 SVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYSNIE 474 Query: 453 ---HAFALGF--VEAPRGEDVHWSMLGDNQKL------------FRWRCRAATYANWPVL 495 + F L F ++ P G + + G N +L +R + R + Sbjct: 475 SLINHFKLIFDGIKLPNGH-FYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALNAF 533 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 M++G+ ++D+ L +GSL+ DR Sbjct: 534 SSMVQGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/410 (25%), Positives = 169/410 (41%), Gaps = 67/410 (16%) Query: 178 NSDARVI-PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + D R+I +GP H ++ L +DGE + +A + Y+H G+EK E R T Sbjct: 34 SDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTT 93 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLGLSC 294 F++ R+ + F + AY VE LGIE +P RA +R +L+E+ RL SHL+ + Sbjct: 94 FVT-RMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRLSSHLVCIATGG 152 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +G T + FR RE + + EL G R + GG+ +D+ + + ++ M Sbjct: 153 MELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDRLREFIKTM 212 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILD----------------RQIARDLRFDHPYADY 398 + ++ E ++ P + R Q +G LD + DLR PY Y Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPHDLRKSDPYCGY 272 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP---------------- 442 + T D + R ++R++E SL ++E +D + P Sbjct: 273 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRLEPGPVMVADKKIAWPAQLAL 332 Query: 443 ----------------------------LLTEGFSYKPHAFALGFVEAPRGE-DVHWSML 473 L+TEGF P VE+P+GE VH Sbjct: 333 GPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTA-VESPKGELGVHVVSD 391 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 G + +R R ++ N + M G V+D + + S+DP DR Sbjct: 392 GGTRP-YRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 106/421 (25%), Positives = 173/421 (41%), Gaps = 79/421 (18%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMG 231 + ++D + +GP+H ++ G R+ V+ GE + D Y+H G+EK E R Sbjct: 45 LESAHNDRIAVNLGPVHPSTH--GVLRVIVELEGETVKDCRLGTGYLHTGIEKSMEYRT- 101 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERLHSHLLN 289 YN+ R+ + F VA+ +VE ALG+ +VP+RA IR +L+E+ R+ SHL+ Sbjct: 102 YNQGVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRIASHLVA 161 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 +G + +G T FR RE+ + + E + G R GGV D+L + T+ Sbjct: 162 VGTGANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDD----TID 217 Query: 350 LVRE----MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIP--- 402 ++RE ++ D+ E+ ++++A P R + +G L L P G +P Sbjct: 218 MIREKLPLVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPLDM 277 Query: 403 KTLFTFTG-------------GDVFSRVMVRVKETFDSLAMLEFALDNMPDT-------- 441 + L + G D ++R VR +E + SL ++ LD + + Sbjct: 278 RKLQPYCGYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGEPVMIA 337 Query: 442 ---------------------------------------PLLTEGFSYKPHAFALGFVEA 462 L+TEGF P A Sbjct: 338 DPKFAYPSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPPGQVYAQVEHA 397 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + VH G +R R +YAN M G +SD + IGS+DP + D Sbjct: 398 KGIQGVHLVTDGGTHP-YRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGGVD 456 Query: 523 R 523 R Sbjct: 457 R 457 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 112 bits (279), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/372 (25%), Positives = 164/372 (44%), Gaps = 30/372 (8%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + N++ I +GP H ++ L +DGE IV+ Y+HRGMEK AE+ M Y + Sbjct: 14 KSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAES-MSYLQY 72 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +SDR + +++ ++E + + VP R IR +L E+ R+ SHL+ G Sbjct: 73 IAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFYGCFGG 132 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T + F+ RE + E + GSR T GG R D+ + + M Sbjct: 133 DLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLDHME 192 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 + + L + +R+ GIG+L ++ + D+R +PY+ Y Sbjct: 193 DTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYSIYD 252 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG---FSYKPHAFA 456 + + F GD + R +R+ E +S+ +L ++ P TEG KP Sbjct: 253 QLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFP-----TEGPWRSKEKPVRLP 307 Query: 457 LGF----VEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 +G +E +G + + +K +R R ++ + + M +G+ +SD I+ Sbjct: 308 VGRYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLVTIM 367 Query: 512 GSLDPCYSCTDR 523 +LDP DR Sbjct: 368 ATLDPVIPEIDR 379 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 157/362 (43%), Gaps = 24/362 (6%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL--SD 240 I +GP H + + +DGE + +A+ + Y+HR EK+ E R FL + Sbjct: 41 TINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENR---TWAKFLPNTS 97 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+ + ++ A+ VE L IEVP+RA IR I E+ R+ SH + G +G Sbjct: 98 RIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGALLLDLGGF 157 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T + F REK + + E L G+R TY GG+ D + T + V+ MR + Sbjct: 158 TPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRPRLKM 217 Query: 361 LVEMLLATPNMEQRTQGIG----------------ILDRQIARDLRFDHPYADYGNIPKT 404 +++ + QR GIG I +A D+R PY+ Y + Sbjct: 218 YRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPKLQFK 277 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---PHAFALGFVE 461 + T+ D +R +VR+ E +SL ++E LD + P + P VE Sbjct: 278 IPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAPKVPRVIRLPAGDYTYAVE 337 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 A RG + + + +R R R ++ N + RG + DA ++GSLD Sbjct: 338 AARGRFMVRVVSDGKENPYRARLRTPSFGNLSLFEETSRGMLLPDALAMMGSLDLVIPDI 397 Query: 522 DR 523 DR Sbjct: 398 DR 399 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 108 bits (269), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 159/374 (42%), Gaps = 54/374 (14%) Query: 187 GPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 GP H +S GH R V DG+ +V+ YVHR MEKL ETR + L +R+ Sbjct: 33 GPQHPSS---GHTRFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNIP-LFERLSL 88 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 + AY +VE ++V RA +R I+ E+ R+ +HL +LGL +G TGFM Sbjct: 89 PDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGLHAIMIGSSTGFM 148 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 F +RE + + ++ GSR T L GGVR QT + + + E V + Sbjct: 149 WGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLDYLEKKIDEFVRL 208 Query: 365 LLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTF 408 ++ P R + +G L ++ I D R + Y Y + Sbjct: 209 VVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYGIYDEFEWDVCVE 268 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYK---------------- 451 GD +R MVR+ E S ++ ALD +P D PL+ E ++ Sbjct: 269 DAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPLVGEAVLHRIPPKQREKANEIIRLG 328 Query: 452 -------PHAFALGFVEAPRGEDVHWSMLGD-NQKLFRWRCRAATYANWPVLRYMLR--- 500 P +G E RG + + GD +K +R R ++ N LR M+R Sbjct: 329 ALYTTMLPQGEGVGVTEGGRGR-YFFHVFGDGTEKPYRVRISTPSWQN---LRAMIRAFI 384 Query: 501 GNTVSDAPLIIGSL 514 G + D P I GS Sbjct: 385 GARLMDLPAIYGSF 398 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 157/362 (43%), Gaps = 41/362 (11%) Query: 182 RVIPVGPLHITSDEPGHFRLFV-DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 RV+ +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y +V L++ Sbjct: 18 RVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQVLTLAN 76 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R + F + +A +VE G++VP RA +R++L E+ R+ +HL+ F+ Sbjct: 77 RHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLV-------FLAPL 129 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T + R RE + E G R + N IGG+R D+ E A + Sbjct: 130 TDPVAAARGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGW--------AERVAGALD 181 Query: 361 LVEMLLATPNMEQRTQGIGILDR--QIAR--------------DLRFDHPYADYGNIPKT 404 VE+ P + G+G+L R +AR DLR D P Y + Sbjct: 182 AVEV----PEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYRELDVR 237 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--LLTEGFSYKPHAFALGFVEA 462 GGD +RV V + ++A+ L +P P L P VEA Sbjct: 238 PSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSVYTRVEA 297 Query: 463 PRG-EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 P G VH + G+ +R + R ++ N L +L G V+ PL++GS Sbjct: 298 PLGVSGVHLASRGEKTP-WRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAVVVGDI 356 Query: 522 DR 523 DR Sbjct: 357 DR 358 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 104/373 (27%), Positives = 155/373 (41%), Gaps = 31/373 (8%) Query: 168 SETYPFINEGNSDARVIP--VGPLHITSDEPGHFRLF--VDGEQIVDADYRLFYVHRGME 223 E +P + D R++ VGP H S GH R+ VDG+ IV D YVHRG E Sbjct: 10 KEIFPGLQLEKVDDRIMTLNVGPQHPGS---GHMRIILKVDGDYIVHCDPDPGYVHRGEE 66 Query: 224 KLAETRMGYNEVTFLSDRVC-GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVER 282 K+AE R + L V C + Y VE LG+EVP+RA IR I E+ R Sbjct: 67 KMAEYRNYITNIPHLERPVIHDSCNILY--PYCLGVEELLGLEVPERAKYIRVIAAELNR 124 Query: 283 LHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 L + F+G T FM RE + + + + G+R T+ + GGVR DI Sbjct: 125 CVYTQYWLAIYGIFLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPN 184 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA---------------- 386 L+ V + E +M P + RT+ GIL R+ A Sbjct: 185 FEDVCLRQVNYFEKRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVD 244 Query: 387 RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE 446 D+R PY Y + GD ++R + + F+S ++ AL MP + + Sbjct: 245 FDIRKKEPYDVYEELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRV 304 Query: 447 GFSYKPHAFALGF---VEAPRGE-DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 P VE+ RG +H G Q +R + ++ N + ++L G Sbjct: 305 KLKPNPKGGDTEVYRRVESGRGSLGMHIISRGKPQP-YRLKISVGSFRNLIAMPHLLTGE 363 Query: 503 TVSDAPLIIGSLD 515 + + P + SL+ Sbjct: 364 MLGNMPAVYWSLN 376 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 105 bits (262), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 24/378 (6%) Query: 169 ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 228 E Y + S + GP H + ++ + G+++V Y+HRG EK+ E Sbjct: 4 ENYQPVEHPASHEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEE 63 Query: 229 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 288 R+ V L R+C Y +VE G+EVP+RA IR ++LE+ R+ +HL Sbjct: 64 RLWIQNVA-LVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHLF 122 Query: 289 NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 G + G + R+ + + E L G+R GGVRRDI + Sbjct: 123 IAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRLG 182 Query: 349 KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFD 392 +++ + A + E ++ P +R +GIG + ++ A D+R + Sbjct: 183 QVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRN 242 Query: 393 HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT--PL---LTEG 447 PY Y + + T TGGDV R+ VR E +S +L + +P P+ L Sbjct: 243 DPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLPNP 302 Query: 448 FSYK-PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-PVLRYMLRGNTVS 505 ++ P A EA +GE +++ K +R R + + VL + G + Sbjct: 303 LAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGARIE 362 Query: 506 DAPLIIGSLDPCYSCTDR 523 D +I+ SLD C DR Sbjct: 363 DIAMIMFSLDACPPEVDR 380 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 97/376 (25%), Positives = 163/376 (43%), Gaps = 38/376 (10%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +I +GP H + + +DGE +VD L Y+HR EK A T + YN+ DR+ Sbjct: 31 LINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAAT-LPYNQTIPFVDRL 89 Query: 243 CGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 + A+ VE+ LG+ ++P+R IR ++ E+ RL SH + +G +G Sbjct: 90 DYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAIGTYGIDLGAF 149 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T F+ R RE + + E G+R Y IGG+ D+ + L+ + ++ + E Sbjct: 150 TSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEFITYLKPKLEE 209 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 + ++L+ +RT +G+L A DLR Y+ Y + Sbjct: 210 INQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDGYSIYPELSFD 269 Query: 405 LFTFTG-----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + G GD + R V+ +E +S+ + E L + T L + P Sbjct: 270 IPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRL--TSDLKRTADFNPQKMVPKK 327 Query: 460 V-----------EAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 V E PRGE + DN K R + R+++++N V+ + +G ++D Sbjct: 328 VRTKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKARSSSFSNLSVISSIAKGQVLADL 387 Query: 508 PLIIGSLDPCYSCTDR 523 IIGS+D DR Sbjct: 388 IAIIGSIDIVLGEIDR 403 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 93/389 (23%), Positives = 163/389 (41%), Gaps = 48/389 (12%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 +D ++ +GP H ++ L DGE + + L Y+HR EK+ E + + Sbjct: 17 TDEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENLTPRQWIPY- 75 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DR+ + ++ + +VE LG ++ ++A +R I+ E+ R+ SHL+ +G +G Sbjct: 76 TDRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVGMGAYGLDLG 135 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 + F+ FR REK + + E G+R TY GG D+ K + + +++ + Sbjct: 136 TFSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEEFLKQFEPVI 195 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP------------------------ 394 E +L +RT IGI+ ++A D P Sbjct: 196 QEYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDGEERYTEMYD 255 Query: 395 -YA---------------DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM 438 YA DY +PK GD + R VR+ E S+ ++ A++ Sbjct: 256 GYAFEVIVSRNGHYPADHDYPPVPKEAVL---GDCWHRFYVRMLEVVQSIDLVRQAIERY 312 Query: 439 P----DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 D + + P A E PRG+ + + N +R R R++++ N + Sbjct: 313 STASGDWGQPIKLTTKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARSSSFCNLSI 372 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + RG ++D P I+GSLD DR Sbjct: 373 TADLCRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 163/352 (46%), Gaps = 27/352 (7%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H L + G++IVDA + Y+HRG EKL E R + + + RVC Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRT-FIQCFPIVCRVCVPE 92 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + Y +VE GIE P+RA IR+++LE+ R++S+L+ LG G Sbjct: 93 PDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWT 152 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK--EQRLQTLKLVREMRADVSELVEM 364 +R+ + E L G+R + L GGVR + + EQR++ + +RE+ + + ++ ++ Sbjct: 153 TYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRME--ETLRELESTMKDVRDV 210 Query: 365 LLATPNMEQRTQGIGILD----------------RQIARDLRFDHPYADYGNIPKTLFTF 408 L ++R+ G+G++D +A+D+R D PY Y + Sbjct: 211 LFHNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAIVG 270 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTE---GFSYK-PHAFALGFVEAP 463 D+++R VR ++ S+ ++ L MP + P++ + +K P E Sbjct: 271 KDSDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQGETYIRGECS 330 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANW-PVLRYMLRGNTVSDAPLIIGSL 514 RGE ++ + + R R +Y + +L +M+ +SD ++ SL Sbjct: 331 RGEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMVSL 382 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 98/353 (27%), Positives = 144/353 (40%), Gaps = 28/353 (7%) Query: 186 VGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 VGP H S GH R+ V DG+ IV D YVHRG EK+AE R V L V Sbjct: 23 VGPQHPGS---GHMRIVVQIDGDYIVACDPDPGYVHRGEEKMAEYRNYITNVPHLERPVI 79 Query: 244 -GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 C + Y E LGIEVP+RA +R I E+ R + L + F+G T Sbjct: 80 HDSCNVLY--PYVLGAEEILGIEVPERAKYVRVICSELNRCIYTMYWLAIYGIFLGHSTM 137 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM RE + + E + G+R T+ + GGVR D+ L+ V + E Sbjct: 138 FMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANFEDVCLRQVNYFEKRIKEYA 197 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 + P + RTQ G+L R+ A DLR PY Y + Sbjct: 198 AVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDYDLRVKAPYDVYDELDVHTN 257 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH----AFALGFVEA 462 GD ++R V + +S ++ AL MP + + P A VE+ Sbjct: 258 VLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTKLKPNPKTKGPATVYKRVES 317 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 RG + + + +R + ++ N + +L G + + P + SL+ Sbjct: 318 GRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIGEKLGNMPSVYWSLN 370 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 145/350 (41%), Gaps = 46/350 (13%) Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 +HRG EKL E + Y + DR+ + + + Y+ +VE L IEVP+RA IR++ Sbjct: 151 LHRGTEKLIEYKT-YTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRTMF 209 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 E+ R+ +H + + VG T F+ F REK M E + G+R GGV Sbjct: 210 GEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGVAY 269 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFD----- 392 D+ K + + V E+ E++ + RT GIG + Q A D F Sbjct: 270 DLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGVMLR 329 Query: 393 -----------HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 PY Y + + GD + R + RV+E SL ++E L+ MP Sbjct: 330 GSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKMPAG 389 Query: 442 ----------------------------PLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 L +EG++ P +EAP+GE + + Sbjct: 390 QIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPP-GETYSAIEAPKGEMGVYLVS 448 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + RA +A+ +M R + + D IIG+LD + DR Sbjct: 449 DGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 498 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 127/284 (44%), Gaps = 25/284 (8%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 D V+ +GP H + +DGE+++ D Y+HRG EK E +N + ++ Sbjct: 27 DTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECEDHTWHNLIPYV- 85 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DR+ ++ AY + VE +GIE+ R +R++L E RL HL + S +G Sbjct: 86 DRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHLTCVAASLMELGA 145 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 T F+ VR+ L G+R TY IGG+ D+ + +++R+ Sbjct: 146 MTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRLGEILRDYEQYAE 205 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG---- 399 + ++ R + +G ++ A RDLR D PY Y Sbjct: 206 RVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRKDTPYLAYAELDF 265 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 ++P +F GD + R VR++E +S+ M+ +D +PD P+ Sbjct: 266 DVPVGIF----GDNYDRYYVRMREMDESVYMIRQLMDMIPDGPI 305 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 87/386 (22%), Positives = 162/386 (41%), Gaps = 48/386 (12%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ +GP H + +DGE++ AD Y+HRG EK +E Y+++ +DR+ Sbjct: 21 LVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHT-YHKIIPFTDRL 79 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 ++ AY VE LGIE+ R +R++L E R+ H+ + + +G T Sbjct: 80 NYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVMEMGAMTA 139 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 F+ +R+ L G+R TY +GG++ D L + L+ L+ + + + Sbjct: 140 FLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKND-LPDGWLERLEEILQFTEKYCGRI 198 Query: 363 EMLLATPNM-EQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 LL + RT+ +G + + A D+R D+PY Y ++ + Sbjct: 199 HGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYLAYADLDFEV 258 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----------------------- 442 GD + R VR++E +S++M+ + +PD P Sbjct: 259 PVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNIDDRRIMYPTKDKVYTKIEYL 318 Query: 443 -----LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 L+ +G + EAP GE + + + + ++ R+ ++A+ + Sbjct: 319 ISHFKLVIDGIQVPAGEIYVSH-EAPNGELGFYLISDGSGRPYKLHVRSPSFAHMGGMHT 377 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L G V+D GS++ DR Sbjct: 378 LLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 97/372 (26%), Positives = 159/372 (42%), Gaps = 32/372 (8%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 D + +GP H ++ F + DGE I A + Y+HR +EK+ E R Y+ + Sbjct: 21 DEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTYSGFMPYT 79 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DRV I + A+ ++ E +GIEVP+RA +R I E+ R+ SH++ LG VG Sbjct: 80 DRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVGA 139 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 T F R RE E L G+R T+ + IGGV D+ K + + + Sbjct: 140 VTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIMV 199 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 E ++ +R + ++ + A+ DLR + Y+ Y P+ Sbjct: 200 EFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVY---PE 256 Query: 404 TLFTF--------TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----LLTEGFSYK 451 F T GD + R VRV+E +S +L ALD + + P L + Sbjct: 257 LEFDVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPEDDILGKLPKKMR 316 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P A +E+ RG+ + + ++ +R R R ++ ++ G ++D +I Sbjct: 317 PDGEAYARIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADLVALI 376 Query: 512 GSLDPCYSCTDR 523 S D DR Sbjct: 377 ASFDVVAPEIDR 388 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 158/389 (40%), Gaps = 52/389 (13%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I GP H + L +DGE + D + +HRG EKL E + + + DR+ Sbjct: 11 INFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQALPYF-DRLD 69 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + A+ + E L I +P+R IR + E+ RL SHLLN+ VG T Sbjct: 70 YVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAMDVGALTPP 129 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + F REK M E G+R +GGV +D+ + +L Sbjct: 130 LWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPFLKVCDDLEG 189 Query: 364 MLLATPNMEQRTQGI--------------GILDR--QIARDLRFDHPYADYGNIPKTLFT 407 +L +QR GI G++ R A DLR PY Y + + Sbjct: 190 LLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECYSELDFDIPI 249 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDN--MPDT------------------------ 441 GD + R +VR++E S+ +++ L+ +P+ Sbjct: 250 GKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPSRAEMKRSME 309 Query: 442 ------PLLTEGFSYKPHAFALGFVEAPRGE-DVHWSMLGDNQKLFRWRCRAATYANWPV 494 L TEG P VEAP+GE V+ G NQ ++ + RA ++A+ Sbjct: 310 AMIEHFKLYTEGHRV-PAGEVYVAVEAPKGEFGVYLVSDGTNQP-YKCKIRAPSFAHLSA 367 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + ++ RG+ ++D IIGSLD + DR Sbjct: 368 MDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 164/393 (41%), Gaps = 30/393 (7%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 FP+++P PAA W ER IRD++G D R + WP + E Sbjct: 77 FPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAPLSPRPGPPLPPP-E 135 Query: 164 PTTDSETYPFINEGNSDARVIP-----VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 T PF + S I +GP+H EP RL + G I A++RL Y Sbjct: 136 QAEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYT 195 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG++ L + + ++ R+ G AH +A+ + E AL +E P RA +R ++ Sbjct: 196 HRGIQWLMRGKP-LRDAIRIAARITGDAALAHGLAFARAAEAALRLEPPPRALLLRGLMN 254 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ER HL L + G DT + RE+ + + G+R L + GGV D Sbjct: 255 ELERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMMIDLLIPGGVLTD 314 Query: 339 ILKEQRLQTLKLVREMRADVSELVE-----MLLATPNMEQRTQGIGILDRQIARDLRFDH 393 +L L+T +++ + + EL+E L+ + +G +L A L Sbjct: 315 LLDGTALET--VLQALARTMPELIEGYETAASLSGHGLCACLRGCAVLSGSDAVSLAVPG 372 Query: 394 PYADYGNIPKTLFT--------------FTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 P P L T GD +R+ VR+ E +SL + L+++P Sbjct: 373 PAGRASGRPHDLRTTWQQAPHGTVHRLVLENGDADARMRVRLAEIQESLRLALLFLESLP 432 Query: 440 DTPLLTEGFSYKPHAFALGF--VEAPRGEDVHW 470 P+ +A G+ VE+ RG HW Sbjct: 433 VGPIANPMPIGTGNASGEGYGGVESARGACWHW 465 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/383 (25%), Positives = 158/383 (41%), Gaps = 50/383 (13%) Query: 187 GPLHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 GP H + G RL ++ GE + D + +HRG EKL E + + + DR+ Sbjct: 85 GPQHPAAH--GVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYF-DRLDY 141 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 + + AY+ +VE L I P RA IR + E+ RL +H++ + +G T F Sbjct: 142 VSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFF 201 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 F REK E + G+R GGV +D+ + + + EL E+ Sbjct: 202 WLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEEL 261 Query: 365 LLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTF 408 L RT IG++ + I DLR PY Y + + Sbjct: 262 LTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVG 321 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPD----------TP---------------- 442 + GD + R + RV+E SL ++ L+ MP +P Sbjct: 322 SRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHH 381 Query: 443 --LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 L TEG+ P A +EAP+GE + + + + +R + +A +A+ L M + Sbjct: 382 FKLYTEGYQVPPGA-TYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSK 440 Query: 501 GNTVSDAPLIIGSLDPCYSCTDR 523 G+ ++D IIG+ D + DR Sbjct: 441 GHMLADVVAIIGTQDIVFGEVDR 463 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 92.0 bits (227), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 92/372 (24%), Positives = 153/372 (41%), Gaps = 47/372 (12%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 VGP+H EPGHFR V GE+I + D RL + RG+ L + + + + ++ + G Sbjct: 109 VGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGKGSKDSFPY-AEAISGD 167 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 A+++A++ E A I VPQ R +LLE+ER+ +H+ ++G + D G+ Sbjct: 168 STIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGDMGA----IAGDVGYYP 223 Query: 306 FFRV----REKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADVS 359 V R + + E L G+R G G + R+ + +E+ + + +R + ADV Sbjct: 224 LQGVCSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNELAERIRSVTADVV 283 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTL------FTFTG--- 410 E +R Q GI+ ++ R L F + + L + F+ Sbjct: 284 AHFERAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPIS 343 Query: 411 ---------GDVFSRVMVRVKET-------FDSLAMLEFALD----NMPDTPLLTEGFSY 450 GD ++R +R +E D++ LE A +P + +G Y Sbjct: 344 LELNRDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEAAFSLKFGKVPSKSSVKKGTYY 403 Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 VE RG + L + R + NW L +RG + D PL Sbjct: 404 SA-------VEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHALELAVRGEYIGDFPLN 456 Query: 511 IGSLDPCYSCTD 522 S + Y D Sbjct: 457 NKSFNLSYVGVD 468 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 88/389 (22%), Positives = 157/389 (40%), Gaps = 47/389 (12%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 +D ++ +GP H ++ L DGE + +A + Y+HR EK+ E + + Sbjct: 33 TDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTPRQWIPY- 91 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DR+ + G ++ + +VE + ++P++A +R I+ E+ R+ SHL+ +G +G Sbjct: 92 TDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGTYGLDLG 151 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 + F+ FR RE+ + + E G+R TY GG D+ + + + + Sbjct: 152 SFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTGFLDQFEPVI 211 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDL----------------------RFDHPYA 396 + +L +RT IG++ ++A D R+ YA Sbjct: 212 LDYHALLTNNAIFIKRTANIGVMSAEMAIDYGCSGPVLRGSGVDYDLRRDGEERYTSLYA 271 Query: 397 DYG---------------NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD- 440 Y P GD + R VR+ E ++ +L ++ Sbjct: 272 GYAFEVIVEKNGSYPRDHEYPPVPSDAVLGDCWHRFYVRMLEVIQAIDLLRQGIEKYSQA 331 Query: 441 -----TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPV 494 TP+ + P A E PRG+ + + G R R R++ + N V Sbjct: 332 TGDWGTPIKLA--TKLPKGEAYLETECPRGQMGFYIVSDGSGSIPLRARARSSCFCNLSV 389 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + R ++D P IIGSLD DR Sbjct: 390 APELCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 95/349 (27%), Positives = 148/349 (42%), Gaps = 42/349 (12%) Query: 198 HFRLFVDGEQIVDADYRLF-----YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 L V+GE I D +YR Y R ++ G + +VC C AH++ Sbjct: 18 QLTLTVEGEYIRDVEYRPATGDGAYAQRLLQG------GGESAVRAAAQVCPYCSVAHTL 71 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF-MQFFRVRE 311 A + ++E I P RA IR I+ E+ER SH+ L +G ++ + R Sbjct: 72 ALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALGLNSATRLSQLETRI 131 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 +S+ +A L+G + + GG+ + + T + + E+ + EL E + + Sbjct: 132 RSILLA--LLGHHEAAYIR-PGGLAEPPDEARLADTERAINELLPHMIELAEQTIPRRTL 188 Query: 372 EQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFS 415 R IG+L + AR D R D PYA Y + L GGDV + Sbjct: 189 VARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPALVVEQGGDVHA 248 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALG----FVEAPRGEDVHWS 471 R +V + E +SL + L N+P G +Y LG VEAPRG + ++ Sbjct: 249 RAVVLLIEAIESLRLAVRWLHNLPI------GETYTAFTLRLGEGTATVEAPRG-PLRYT 301 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 + D Q+L A + + R +L+ V D LI S DPC +C Sbjct: 302 VRSDGQRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/375 (26%), Positives = 160/375 (42%), Gaps = 47/375 (12%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM-EKLAETRMGYNEVTFLSDRVCG 244 VGP+H EPGHFR VDGE I RL + RG+ + L M N+V S+ + G Sbjct: 109 VGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLHKAM--NQVMPYSEMISG 166 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 +++A++ E+ I V + RSILLE+ER+ H+ +LG +G+ + Sbjct: 167 DTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIAVHIGDLGGISEDIGYYPLYG 226 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVR-----RDILKEQRLQTLKLVREMRADVS 359 R ++ + E G R +G +++ R R K+ + +L + Sbjct: 227 VCVTERGAALGLMEAWTGHR--FGKSVVRPGRLYLNNRLNAKQAKESFKQLKNAYIKKIR 284 Query: 360 ELVEMLLATPNMEQRTQGIGILDR----------QIAR------DLR---FDHPYADYGN 400 + L+ +++R QG G + +AR DLR FD+P ++ Sbjct: 285 PQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGVNEDLRIENFDYP--NWNP 342 Query: 401 IP-KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM------------PDTPLLTEG 447 +P K GDV++R+ +R E S+ +E ++ + P+ +LT+ Sbjct: 343 LPLKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEINWDLLWEPKVKVPNQEILTK- 401 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 KP F VEA RG + +N + R + NW L +RG V+D Sbjct: 402 -RTKP-GFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDPSVLNWHALELAVRGEQVADF 459 Query: 508 PLIIGSLDPCYSCTD 522 PL S + Y D Sbjct: 460 PLNNKSFNLSYVGFD 474 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 12/242 (4%) Query: 162 PEPTTDSETY----PFIN-EGNSDAR--VIPVGPLHITSDEPGHFRLFVD--GEQIVDAD 212 P+P D +T PF++ E N++ + V+ GP H + G RL ++ GE++ D Sbjct: 60 PQPLIDRDTVEKYNPFLDDEPNTEIQNVVLNFGPQHPAAH--GVLRLILELRGERVAKCD 117 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 + +HRG EKL E + Y + DR+ + + Y+ +VE L IEVP RA Sbjct: 118 PHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKY 176 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR++ E+ R+ +HL+ +G VG T F FF REK M E + G+R Sbjct: 177 IRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEEREKLMEFYERVSGARMHAAYIRP 236 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFD 392 GGV +D+ + + + + + ++ ++L RTQ IG++ + A + + Sbjct: 237 GGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNRIWVDRTQNIGVISAEDALNYGYT 296 Query: 393 HP 394 P Sbjct: 297 VP 298 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 88/372 (23%), Positives = 148/372 (39%), Gaps = 46/372 (12%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 S + +GP H + +DGE I + ++HRG EK E + + + Sbjct: 45 SKLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN-VTWTQCFPY 103 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DR+ + ++V + +VE ++VP+RA +R + E+ R+ HL +G +G Sbjct: 104 TDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMELG 163 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 T F+ R+ L G+R T IGGV RD +T K + ++ V Sbjct: 164 AMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGYV 223 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 E+ +++ RT+G G++ R A DLR PY Y I Sbjct: 224 DEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRID 283 Query: 403 KTLFTFTGGDVFSRVMVR----------VKETFDSLAMLEFALDN----MPDTPL----- 443 + T GD F R +R +++ F + E A+ + +P PL Sbjct: 284 FDIPVGTNGDNFDRFQMRMEEMRQSDRIIRQCFAQMEPGEIAVQDFRYVLPPKPLVYGTI 343 Query: 444 ---------LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 + EG P A G+ EA GE + + + ++ RA + Sbjct: 344 EGLMAHFKIIMEGIQV-PAGEAYGYTEAANGELGFYVVSDGGGRPYKLGLRAPGWPMLAA 402 Query: 495 LRYMLRGNTVSD 506 L +M G+ +SD Sbjct: 403 LPFMSVGSLLSD 414 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 83.2 bits (204), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 94/390 (24%), Positives = 158/390 (40%), Gaps = 54/390 (13%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ GP H S + + GE + D + ++HRG E+L E N F+ DR+ Sbjct: 28 ILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFM-DRL 86 Query: 243 CGICGFAHSVAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + AY +VE AL + R +R+I E+ R+ +HLL+ ++ H + T Sbjct: 87 DYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLS--IATHALDIGT 144 Query: 302 GFMQF--FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL-QTLKLVREMRADV 358 M F F RE+ M + E + G+R L IL + L + L R Sbjct: 145 MAMLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRNSEKTY 204 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP------------------YADYGN 400 +E+ L R GIG++ +I+ P Y Y + Sbjct: 205 TEIYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYAS 264 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL-----------------DNMPDTPL 443 + +F GD F R ++R++E F+S ++ +L N P + Sbjct: 265 LTLRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNNPHLKI 324 Query: 444 --LTEGFSYKPHAFAL------GFVEAPRGEDVHWSMLGDN--QKLFRWRCRAATYANWP 493 L E F Y + L GFVE+ +G + ML N + +R R+ Y + Sbjct: 325 ESLIELFRYSLGEYLLNISLVSGFVESGKG--IFGIMLAANNTNRPYRLYIRSPAYMHLQ 382 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L + G+ ++D ++GS+D + DR Sbjct: 383 LLPKLGAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 91/390 (23%), Positives = 161/390 (41%), Gaps = 51/390 (13%) Query: 192 TSDEPGHFRLF--VDGEQIVDADYRLFYVH--RGMEKLAETRMGYNEVTFLSDRVCGICG 247 TS + GH L VD E IV R F + RG+EK+ T + R+CG+C Sbjct: 10 TSRQEGHAELVMEVDDEGIV-TKGRYFSITPVRGLEKIV-TGKAPETAPVIVQRICGVCP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL-NLGLSCHFVG---FDTGF 303 H++A +++++L IEVP+ +R + L ++SH + + ++ FV Sbjct: 68 IPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAI 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +R+ + + +++ G IGG+ +I + R + +++++ V E VE Sbjct: 128 NSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE 187 Query: 364 MLLATPNMEQRTQGIGI-------------------LDR-------------QIARDLRF 391 +++ + +G+G+ LDR +IA+ Sbjct: 188 LMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKRACS 247 Query: 392 DHPYADYGNI---PKT-LFTFTG---GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 P D N+ P+ + F G V ++ + R E +LA LD + + + Sbjct: 248 TIPLYDGRNVEVGPRARMVEFQGFKERGVVAQHVARALEMKTALARAIEILDELDTSAPV 307 Query: 445 TEGFSYKPHA-FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 F + +G +E PRG DVH + + +N K+ + T N P + G Sbjct: 308 RADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPATEGFH 366 Query: 504 VSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 P +I + DPC SC V +VD R Sbjct: 367 HEYGPHVIRAYDPCLSCATHVMVVDDEDRS 396 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/360 (24%), Positives = 152/360 (42%), Gaps = 64/360 (17%) Query: 220 RGMEKLAETRMGYNEVTFLSD--RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 RG EKL +G N + + R+CG+C +H +A + ++ENA+GI P+ +R L Sbjct: 39 RGFEKLV---VGKNPLFAVEAVMRICGLCHASHGIAMSEAIENAIGIIPPRNGILMREAL 95 Query: 278 LEVERLHSHLLN-LGLSCHFVGFDTGFMQFFRVREKSMTMAELLI--GSRKTYGLNL-IG 333 V R+ SH+L L ++ + + F++ + +++ L+ G T+ NL +G Sbjct: 96 GLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVG 155 Query: 334 GVRR-------------------------DILKEQRLQT--LKLVREMRADVSELVEMLL 366 G+ +L ++ +QT +RE +A+ + LV L Sbjct: 156 GMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDEDIQTEVADELREKKAENNYLVSSLF 215 Query: 367 ATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGD-------------- 412 + I + + R D+P++ TL F GG+ Sbjct: 216 YGDRFNINAERIETMPYY---EYRKDNPHSKEST---TLIAFYGGEKVEAGPRARMKVYR 269 Query: 413 ------VFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALGFVEAPRG 465 ++ RV++T +L LE LD++ D P T+ + P +G EAPRG Sbjct: 270 EFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRTKNIVFGPGK-GVGVYEAPRG 328 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVT 525 +H LGD ++ + T N PV+ M +G +V A ++ DPC CT V Sbjct: 329 TLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVKAAEAVMRLYDPCIPCTTHVV 388 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 138/348 (39%), Gaps = 30/348 (8%) Query: 190 HITSDEPGHFRLF--VDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 H+ PG + VD + I + + +HRG EKL E R GY ++ L+ R Sbjct: 33 HLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEAR-GYRQIPMLASRHDWTAP 91 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL---GLSCHFVGFDTGFM 304 F +++E+A+GI +P R IR++L E R+ SH L G C G + Sbjct: 92 FIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHCDDAGLENAIA 151 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 E + + + G+R + IGG+R E + + + + A V+ L Sbjct: 152 TAI---ENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLDDANALVTWLRTA 208 Query: 365 LLAT----------PNMEQRTQGIGILDRQIARDLRFDHPYADYGNI--PKTLFTFTGGD 412 L AT NM R G + R DL A Y + P+ + GD Sbjct: 209 LDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRTAVYDELKWPEVVIE-PRGD 267 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTE--GFSYKPHAFALGFVEAPRGEDV 468 +SR+ + S ++ LD +P D PL T P +EAP G Sbjct: 268 AYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLETRLPTTIKAPRGRTWTTIEAPWGRAG 327 Query: 469 HWSMLGDNQKLFRWR--CRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 + +L WR R T+AN VL +L G V D I SL Sbjct: 328 Y--LLESRGSTTPWRMALRTPTFANVQVLEAVLPGTRVDDVEATIASL 373 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 107/436 (24%), Positives = 169/436 (38%), Gaps = 41/436 (9%) Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW----PEDMHPLRKDAMDYR 159 +P+++P + ER I D+YG + D R L+ D W P HP Sbjct: 72 YPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAGGGQKGL 131 Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 + +P + +G GP + P H L + +I A+ Y H Sbjct: 132 IHFQPAEHMHQEGDMADG--------WGPATGGMEPPLHVALAMQEGRIRAAETVTGYAH 183 Query: 220 RGME-KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 RGME + +R+ + LS RV AH VA+ +VE+A +V +R LL Sbjct: 184 RGMELRWRNSRV--EDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRLLRVALL 241 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ER+ HL L G +REK + A + GSR + + GG+ Sbjct: 242 ELERICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVPGGLSLR 301 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADY 398 + +L D L+ + P + + GIG + + + D P A Sbjct: 302 HATQMGDMCGRLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLDGPTARA 361 Query: 399 GN--------IP--KTLFTFTG----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 +P + ++ FT G R M+ ++E +SL M LD + L Sbjct: 362 AGWDCDGRRMMPGYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRM----LDEVASRIGL 417 Query: 445 TEGFSYK---PHAFALGFVEAPRGEDVHWSML--GDNQKLFRWRCRAATYANWPVLRYML 499 T G S + + G VE P G ++W L G +++F R + A +L Sbjct: 418 TAGGSVQLSMQDSEGTGMVEGPWGGILYWVRLKEGRVEQVF---ARNPSSAALLTFEAIL 474 Query: 500 RGNTVSDAPLIIGSLD 515 G+ D L+ SLD Sbjct: 475 PGHQPDDVALLARSLD 490 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 153/397 (38%), Gaps = 75/397 (18%) Query: 192 TSDEPGHFRLF--VDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVT--FLSDRVCGIC 246 TS + GH L VD E IV Y RG+EK+ G N T L R+CG+C Sbjct: 10 TSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMV---AGKNPETAPVLCQRICGVC 66 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV--------- 297 H++A +++++L IEVP+ +R L +H +N HF+ Sbjct: 67 PIPHTLASVEAIDHSLDIEVPKAGKLLRQATLA-----AHGVNSAAIHHFLIAPDFVPEE 121 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 F T VR+ + ++L G +GG+ R+I + + + ++ + D Sbjct: 122 DFTTAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPD 181 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPK-------------- 403 + + VE++ + + +G+G++D + A YGN+ + Sbjct: 182 MEKHVELMKSFIAARELPEGLGVVDAPLLAS------SASYGNLDEFDYDNFSEVLPEAW 235 Query: 404 ------------TLFTFTGGDVFSRVMVRVKE---------TFDSLAMLEFALDNMPDTP 442 T+ G +V + R+ + +A E L+N T Sbjct: 236 YDDPEIGKKACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTI 295 Query: 443 LLTEGFSYKPHAFA-----------LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 L E A A +G +E PRG +VH + + D++ F + T N Sbjct: 296 DLLEQIDTSAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDSKIQF-YSAIVPTTWN 354 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVD 528 P + G +I + DPC SC V +VD Sbjct: 355 IPTMGPATEGFHHKYGADVIRAYDPCLSCATHVMVVD 391 >UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermaceae RepID=Q2S5J1_SALRD Length = 234 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 79/151 (52%), Gaps = 5/151 (3%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVL 63 + R A++ AL+ +F AVLD ER E TI V+ N + +V ++L + + L Sbjct: 40 KDTTRVPAVIDALREEFGAAVLDVERYANED-TIYVEKNRIREVCRFLKEEEGFDYFVDL 98 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D T Y V+Y L +K + +K VD + PSVT AA W ERE D Sbjct: 99 GGIDNFTAEDRYEVFYNLVSTERQK-RLRLKVQVDEGDMQVPSVTEVYRAANWNEREAYD 157 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 M+G V PD RR+ +P+D+ D HPLRK+ Sbjct: 158 MFGFSFVDHPDPRRMYMPEDF--DYHPLRKE 186 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 16/204 (7%) Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 N+ E I+VP+RA IR I+LE+ R+ SHLL LG +G T F FR RE Sbjct: 8 ANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRERELVY 67 Query: 315 TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQR 374 + E G R + IGGV D+ + L V+E ++++ P +R Sbjct: 68 DLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNPIFLER 127 Query: 375 TQGIGILDRQIARDLRFDHPYADYGNIPKTLFTF----------------TGGDVFSRVM 418 +G+GI+ + A + P I L GD SR + Sbjct: 128 VEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEGDSLSRYL 187 Query: 419 VRVKETFDSLAMLEFALDNMPDTP 442 VR+ E + +++ AL +P P Sbjct: 188 VRIGEMMAFIKIIQQALKGIPGGP 211 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/330 (25%), Positives = 144/330 (43%), Gaps = 30/330 (9%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP E +F L GE I D Y R ++ L + + +R+ G Sbjct: 50 GPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDLKILGDP---VSRALLKVERINGFH 106 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 ++S+ Y +VE ALGIE + + +R + LE+ER+ S++ + C GF Q Sbjct: 107 AASNSIGYILAVEEALGIENSE-LNDMRIVELELERIRSNIDVIKGMCESAGFAVPEKQL 165 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 +RE+ + G R + +N G V D T+KL + ++ + LL Sbjct: 166 LYLREEVARIISRAFGHRYFFSVNGFGTVSGD------FSTIKL-NAIEKQFRDIYDGLL 218 Query: 367 ATPNMEQRTQGIGILDRQ-----IAR------DLRFDHPYADYGNIPKTLFTFTGGDVFS 415 ++ R Q GI+ + AR D R D DY N T T +G D FS Sbjct: 219 SSKIFLDRIQENGIVKNENSTGPAARAAGFKFDARKDSKSLDYRNF--TPVTESGADSFS 276 Query: 416 RVMVRVKETFDSLAMLE-FALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 R++VR +E F+++ +++ + + N+ S K A +E+P G D+ + + Sbjct: 277 RLVVRSEEVFEAINIIDSYGVKNIKTRTKNELTGSGKGSA----RIESPAG-DIFYYVNI 331 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 +N KL + + +Y N + R L+ N + Sbjct: 332 ENGKLNDIQMVSPSYLNLRLFREALKNNNI 361 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 1/153 (0%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H + L ++GE+IV AD + +HRG EKL E + + + DR+ + Sbjct: 101 GPQHPAAHGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQALPYF-DRLDYVS 159 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + ++ +VE L IE+P+RA IR++ E+ R+ +HL+++ VG T F+ Sbjct: 160 MMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWG 219 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 F REK M E + G+R GGV +DI Sbjct: 220 FEEREKLMEFYERVSGARLHAAYIRPGGVHQDI 252 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 66/266 (24%), Positives = 119/266 (44%), Gaps = 23/266 (8%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GPL EP F + GE+I +Y +Y ++ + + + + +R+ G Sbjct: 49 GPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK-IRNIKLKGINIKDAIPYIERINGNF 104 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 ++++ + +SV +AL IE+P I +E+ER+ +HL L C GF+ Sbjct: 105 AASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMCEPAGFNVPANML 164 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 ++E+ + ++ G R +G+N LK +RL K++ + +++++ LL Sbjct: 165 MHIKERFSRIIDITFGHRYFFGVNQ--------LKSKRLDIHKMINVYKNEINDIYLNLL 216 Query: 367 ATPNMEQRTQGIG-ILDRQI----AR------DLRFDHPYADYGNIPKTLFTFTGGDVFS 415 + R Q G ILD + AR D R+D Y + + T GD S Sbjct: 217 NSRLFTDRLQDNGRILDDDMTGPAARAAGYKYDSRYDFDIFYYNDTGYEIKTDDSGDAMS 276 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDT 441 R VR E +S+ ++E A + D+ Sbjct: 277 RFNVRFNEILNSIDIIENAENKTGDS 302 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 81/353 (22%), Positives = 146/353 (41%), Gaps = 51/353 (14%) Query: 220 RGMEKLAETRMGYNEVTFLSD--RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 RG EK+ +G N + + R+CG+C +H +A + ++E+A+G+ P+ +R L Sbjct: 42 RGFEKMV---VGKNPLFAVEAVMRICGLCHASHGIAASEAIEHAIGVTPPRNGRLMREAL 98 Query: 278 LEVERLHSH-LLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLI--GSRKTYGLNLIGG 334 + R SH LL L ++ + + F++ + +++ L+ G T+ NL G Sbjct: 99 GLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIG 158 Query: 335 VRRDILKEQRLQTLKL-VREMRADVSELVEMLL--------------ATPNMEQRTQGIG 379 + K LK +++ A E+L+ A + G Sbjct: 159 GMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDIQTEIADELREAKRPFKYLASGFF 218 Query: 380 ILDR-QIARDLRFDHPYADY-----GNIPKTLFTFTGGD--------------------V 413 DR I D PY ++ TL +F G+ + Sbjct: 219 YGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARMITYREFRDESL 278 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 + + R+++T ++ L LD + + P T +++P +G EAPRG +H+ Sbjct: 279 YGLHLARIEDTRLAIQRLGEILDEIRIEEPFRTGDITFRPGK-GVGVYEAPRGTLIHYVE 337 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVT 525 LG+ ++ + R T N PV+ M +G +V A ++ DPC CT V Sbjct: 338 LGEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKAAEAVMRLYDPCIPCTTHVV 390 >UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL31_THEYD Length = 201 Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 51/143 (35%), Positives = 77/143 (53%), Gaps = 5/143 (3%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDERTL 71 I LK QFP V+ E ++ QV++ VK N + ++++YL Q L L G D Sbjct: 38 IAYKLKEQFPEEVI-EIKEFRGQVSVIVKSNKIKEILKYLKNQQGFNHLQDLCGVDYSPE 96 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + + Y L + I V+A V+ ++ E SVT A W ERE DM+G+ +G Sbjct: 97 KPRFEIVYNL-YSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFDMFGIRFIG 155 Query: 132 LPDQRRLVLPDDWPEDMHPLRKD 154 PD RR+++P+DW + +PLRKD Sbjct: 156 HPDLRRILMPEDW--NGYPLRKD 176 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 160/404 (39%), Gaps = 67/404 (16%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A + GP H + L ++GE + D + +HRG EKL ET+ + + D Sbjct: 3 AICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF-D 61 Query: 241 RVCGICGFAHSVAYTNSVENALG-IEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 R+ + AY ++E L +R++ E+ R+ +H+ L ++CH Sbjct: 62 RLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHM--LAIACH--AL 117 Query: 300 DTGFMQ----FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ-TLKLVREM 354 D G M F REK M E + G R V + L + L L+ Sbjct: 118 DIGSMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNC 177 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFD--HPYA 396 +SE+ +L +QR IG + + I RDLR D YA Sbjct: 178 LTTLSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYA 237 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM--------PDTPL----- 443 +Y + +T GD + R ++R+ E +S+ ++ A+ + P + L Sbjct: 238 NYYYLNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNK 297 Query: 444 -----------------LTEGFSYKPHAFAL------GFVEAPRGEDVHWSMLGD-NQKL 479 L F Y F + VE+P+GE +++ D + K Sbjct: 298 KKFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGE-FGVTLVSDGSNKP 356 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R + R+ Y + VL M +G+ ++D +IG++D + DR Sbjct: 357 YRCKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 67/283 (23%), Positives = 118/283 (41%), Gaps = 26/283 (9%) Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L +R+ G +H+VA+ +VE+AL I+VP+ R I+LE+ER+ S+L + C Sbjct: 99 LVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLCEPA 158 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 GF Q +RE + G R + + +GG + + L + ++ +++ + Sbjct: 159 GFGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFNGLVLE-----SVIEDVKEE 213 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQ-----------IARDLRFDH---PYADYGNIPK 403 + LL + R Q G + I D R D PY+ G P Sbjct: 214 FEGIFNDLLQSKIFLNRLQNNGKISSSDMLGPAARAAGIEVDARIDEKRLPYSKLGFKP- 272 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 F D F R VR KE S ++ A+ ++P K + VE+P Sbjct: 273 --IVFDEPDAFGRFYVRSKEILSSADLISKAIRFSGNSPPAK---IEKTNGEGAARVESP 327 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSD 506 +G+ ++ + D K+ + + + N + + GN +D Sbjct: 328 QGDLFYYVKINDG-KISDVQISSPSLLNIEAFKKSMIGNIFTD 369 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 95/398 (23%), Positives = 163/398 (40%), Gaps = 61/398 (15%) Query: 192 TSDEPGHFRLF--VDGEQIVDADYRLFYVH-RGMEKLAETRMG-YNEVTFLSDRVCGICG 247 T+ GH +L VD E IV+ Y L RG E + + + + + + R+CGIC Sbjct: 15 TTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVM--RICGICQ 72 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC-HFVGFDTG--FM 304 H +A ++ENA+ EVP +R ++ RLHSH L+ L+ F+ D + Sbjct: 73 TTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETDLKI 132 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLN----LIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + ++ ++ + +L++ G++ +IGG+R +I + + + +R+ D E Sbjct: 133 ELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDAYE 192 Query: 361 LVEMLLATPNMEQRTQGIGILDRQ------IARDLRFDHPYA----DYGNIPKTLF---- 406 L E T +E+ + IGI D IA + YA D IP + Sbjct: 193 LYEKY--TELIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYDDE 250 Query: 407 ----TFT---------------------------GGDVFSRVMVRVKETFDSLAMLEFAL 435 T T GG + R +E ++ L Sbjct: 251 EAKQTTTIQIPLYAGVPAEGGPRARMVKFGNFREGGSAMDINIARAQENLGAVYRALEIL 310 Query: 436 DNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 D + YK F +G EAPR + H + +G + K+ +R AA+ N+P++ Sbjct: 311 DELDLNGKTRAEVEYK-DGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFPIV 369 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 + G A +I+ + D C SC V + D ++ Sbjct: 370 EKAIEGYPQQYAEVIMRAYDICASCATHVIVKDEETKE 407 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 102/415 (24%), Positives = 164/415 (39%), Gaps = 94/415 (22%) Query: 197 GHFRLFVDGEQIVDADYR--LFYVHRGMEKLAETRMG--YNEVTFLSDRVCGICGFAHSV 252 GH L ++ E D + + +F VH G +G Y + L+ R+CGIC AH + Sbjct: 16 GHANLTIEIE---DENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGRICGICTVAHEI 72 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC-----------HFVGFDT 301 A +VE+ALGIE+ + +R ++L + SH+L+L + Sbjct: 73 ASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELANKNV 132 Query: 302 GFM-QFFRVREKSMTMAELLIGSRKTYGLNLI-GGVRRDILKEQRLQTLKLVREMRADVS 359 + + F ++E S M E LIG R ++ G V + I KE + +K ++E+ + Sbjct: 133 NLVKKAFELKEASNYMTE-LIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPFLL 191 Query: 360 ELVEMLLAT--PNMEQRTQGIGILD--------RQIAR-DLRFD-HPY--------ADYG 399 + E+ L+ P E+ ++ + + D +IA FD H Y +Y Sbjct: 192 DTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEYS 251 Query: 400 NIPKTLFTFTGGDVFSRVMVR------VKETFDSLA----------------------ML 431 + +L G D + R ++E LA + Sbjct: 252 SAKHSL--IEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALENV 309 Query: 432 EFALDNMPDTPLLTEGFSYKPHAF--------ALGFVEAPRGEDVHWSMLGDNQKLFRWR 483 FAL+ M L E Y PH +G +EAPRG +H + N K Sbjct: 310 HFALEAMEIAENLKE---YDPHKINIPRVSGEGVGVIEAPRGLLIHHYKI-KNGKCTYVN 365 Query: 484 CRAATYANWPVLRYMLRG---NTVS--------DAPLIIGSLDPCYSCTDRVTLV 527 T N + +L+G VS +A II + DPC SC+ VT + Sbjct: 366 IITPTAMNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVTRI 420 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 102/223 (45%), Gaps = 23/223 (10%) Query: 182 RVIPVGPLHITSDEPGHFRLF--VDGEQIVD-ADYRLFYVHRGMEKLAETRMGYNEVTFL 238 +V+ + P T+ GH +L VD + IV+ D+ RG+EKLA + +V + Sbjct: 3 KVVEISP---TTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPKI 58 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS---HLLNLGLSCH 295 + RVCGIC AH++A T ++E ++G E+P A +R+IL R+HS H + + + Sbjct: 59 ASRVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFY 118 Query: 296 FVGFDTGFMQF-------------FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 G + F F R+RE + T+ + G IGG+ ++ Sbjct: 119 IPGTEKKFNLFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPR 178 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI 385 + + L +E V E +E + Q + + + +QI Sbjct: 179 AKQKMADLAKEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQI 221 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 99/229 (43%), Gaps = 9/229 (3%) Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARV----IPVGPLHITSDEPGHFRLFVDGEQI 208 KDA L P + E + A+V + GP H + L + GE I Sbjct: 51 KDAKIAPLSAMPWSLQAARSATAEALAPAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEII 110 Query: 209 VDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQ 268 + AD + +HRG EKL E + + + DR+ + +Y ++E L + VP Sbjct: 111 MRADPHIGLLHRGTEKLLEYKTYLQGLPYF-DRLDYVSMMCMEHSYVLAIEQLLNLSVPL 169 Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCHF--VGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 R IR + E+ R+ +HL L ++CH VG T F+ F REK E + G+R Sbjct: 170 RGQYIRVLFSEITRVLNHL--LAITCHSMDVGALTPFLWAFEEREKLFEFYERVSGARMH 227 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 G +GGV +D+ R+ + E+ E+L ++RT Sbjct: 228 AGYFRVGGVSQDLPIGLLRDVYDWARQFGLRLDEMEELLTGNRIWKERT 276 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 156/401 (38%), Gaps = 72/401 (17%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ GP H S F L ++GE I AD + ++HRG EKL E R + + DR+ Sbjct: 63 MMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYLKSLPYF-DRL 121 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHT-IRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + + AY ++EN LG +R++ E+ RL +H LG+S H D Sbjct: 122 DYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHF--LGISTH--SLDV 177 Query: 302 GFMQ----FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ-RLQTLKLVREMRA 356 G M F RE+ M E + G+R + L Q + L + Sbjct: 178 GNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNNTYK 237 Query: 357 DVSELVEMLLATPNM-EQRTQGIGILDRQ----------------IARDLRF--DHPYAD 397 ++E+ ++LAT N+ R IG++D +DLR Y+ Sbjct: 238 SITEMF-VILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKTSTYSY 296 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAML-------------------------- 431 Y + F GD + R ++R++E +S+ ++ Sbjct: 297 YWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFESTTALPFWYNTESY 356 Query: 432 --------EFALDNMPDTPLLTEGFSYK-----PHAFALGFVEAPRGEDVHWSMLGD-NQ 477 +F + L+T Y P VEAP+GE S++ D + Sbjct: 357 VSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKGE-FGVSLISDGSS 415 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 K FR + R Y + + +RG+ +D I+GS D + Sbjct: 416 KPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVF 456 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 108/468 (23%), Positives = 171/468 (36%), Gaps = 43/468 (9%) Query: 79 YALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRL 138 +AL +EG E+ V+ A V + ++ PAA ER + D++G + D R Sbjct: 61 HALFLEGGER---VLVASVAPYGGRYLGLSGVRPAASLPERCVHDLWGFEAMEARDTR-- 115 Query: 139 VLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGH 198 P H + RP P + P ++ +GP PGH Sbjct: 116 ------PWLDHGVWTATWPLGPRPGPVSWPPDPPEFRPQPGGGTILGIGPADGGHHTPGH 169 Query: 199 FRLFVDGEQIVD-ADYRLFYVHRG-MEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 RL + G V A++RL Y HRG M +L + L+ R AH A Sbjct: 170 LRLALGGRDTVGGAEWRLGYAHRGVMARLCG--LDAPAAVRLAGRAAAGASVAHQSALCR 227 Query: 257 SVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTM 316 ++E A V R +L E+ER+ +HL ++ + G + +RE M + Sbjct: 228 AIEAASDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATALAAECEYLRESVMDL 287 Query: 317 AELLIGSR------KTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 + G R + G + G + V ++ +V P Sbjct: 288 CGRMFGHRLLMDLVRPEGPDGHAGAGDAEDGAAIAAVARQVADLVRGRMRVVGRCRDWPG 347 Query: 371 MEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVF 414 +E R G G+L AR DLR P G + + GDV Sbjct: 348 LEARVVGRGVLGEHTARMLGVGGVAGRASAREEDLRRLVPGYRLGWLDTGVRRA--GDVA 405 Query: 415 SRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 +R+ +R+ E S+ +LE A D PL G + +G E PRG +W + Sbjct: 406 ARIDLRLAEIGGSVRILESA---GADGPLPGTGTPPRRDGEGVGCAEGPRGAVWYWVRM- 461 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + R A+ L ++L G D +I+ S + D Sbjct: 462 EGGAVRAAHVRDPALAHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 509 >UniRef50_Q2FTW5 Membrane bound hydrogenase subunit mbhK n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FTW5_METHJ Length = 210 Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 7/129 (5%) Query: 30 RQTPEQ-VTITVKINLLPDVVQYLY---YQHDGWLPVLFGNDERTLNGHYAVYYALSMEG 85 ++ P++ V +TV L D V L Y H G + D L H V++ E Sbjct: 35 KKLPQKTVWMTVSREDLNDAVAELISIDYPHLGVIAASDNGDMIDLLYHLQVFFGGKHE- 93 Query: 86 AEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWP 145 E C +V V P+++ +P AV+ ERE +DM G+ G+PD RR+ LPDD+P Sbjct: 94 -EIC-VVFTVQVPKSDPHVPTISGLIPGAVYSEREKQDMIGVTVDGIPDSRRIFLPDDFP 151 Query: 146 EDMHPLRKD 154 E+++P RKD Sbjct: 152 EEIYPWRKD 160 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 46/169 (27%), Positives = 81/169 (47%), Gaps = 19/169 (11%) Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI-EVPQRAHTIR 274 FY RG+EK+ R + + ++ R+CGICG AH +A ++ENA+GI E+P++A R Sbjct: 33 FYSTRGIEKVLRER-PFMDALVINPRICGICGHAHLIATVRAIENAIGIKEIPEKAKITR 91 Query: 275 SILLEVERLHSHL--LNLGLSCHFVGFDTGFMQF-----------FRVREKSMTMAELLI 321 + E + +H+ L + F+ F QF + + + + L Sbjct: 92 LVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFEPFKGERWKRAVQFSSQIVKIIALFG 151 Query: 322 GSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA----DVSELVEMLL 366 G + GG+ + + + L+ L LV+E + +VSE +E+ L Sbjct: 152 GQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKTFFEKNVSEDLELFL 200 >UniRef50_UPI0001693946 NADH dehydrogenase subunit C n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693946 Length = 249 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Query: 92 VVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPL 151 +VK D D PSVTP P A W ERE+ D+ G+ G PD RR+++PDDW HPL Sbjct: 181 MVKVKTDRDRPSIPSVTPIWPTANWNEREVYDLLGVDFPGHPDLRRIMMPDDWV--GHPL 238 Query: 152 RKD 154 RKD Sbjct: 239 RKD 241 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 59/106 (55%), Gaps = 6/106 (5%) Query: 197 GHFR--LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 GH R + ++ + ++ + RG+E + + R + F ++R+CG+C H++A Sbjct: 29 GHLRCEVNINDDNVITNAVSCGTIFRGIEIILKGRDPRDAWAF-TERICGVCTGTHALAS 87 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 ++VENALGI++P A+ IR+++ H HL++L H G D Sbjct: 88 VHAVENALGIDIPDNANIIRNLMQLCLMYHDHLVHL---YHLTGLD 130 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 2/95 (2%) Query: 197 GHFRLFVDGEQ-IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 GH R+ V+ E V Y + RG+E + + R + F + R CG+C + H++A T Sbjct: 35 GHLRIEVEVENGKVKNAYSSSTLFRGLEIILKGRDPRDAQHF-TQRTCGVCTYTHALAST 93 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 V+NA+G+ +P+ A IR+++L + LH H+++ Sbjct: 94 RCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHF 128 >UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWG9_9BACT Length = 166 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 9/149 (6%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGN 66 ++I+ +K+ FP A+ D E +T +K + V ++ + +L + G Sbjct: 3 NDSIITLVKSHFPEAITDCYDFRGE-LTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGV 61 Query: 67 DERTLNGHYAVYYAL-SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D+ NG + V Y L SM+ + + +K V +D+ +VT A W ERE DM+ Sbjct: 62 DKIETNGVFEVVYHLYSMQKKHR--VRLKVPVPSDNPTISTVTHIWKTANWHERETYDMF 119 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 G+ G PD R++++P+D+ + HPLRKD Sbjct: 120 GIQFQGHPDLRKILMPEDF--EGHPLRKD 146 >UniRef50_B5IS37 Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS37_9EURY Length = 184 Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 29/64 (45%), Positives = 40/64 (62%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 I +K + DS P++T +P A EREIR+M G+ GL ++R L LPDDWPE +P Sbjct: 95 ITLKFDLPKDSLILPTITDLMPGAETNEREIREMLGIEFEGLKNKRHLFLPDDWPEGKYP 154 Query: 151 LRKD 154 R+D Sbjct: 155 WRRD 158 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 56/99 (56%), Gaps = 5/99 (5%) Query: 197 GHFRL---FVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 GH ++ F D ++ ++ + V RG EK E R + + R+CGIC +H +A Sbjct: 14 GHGKVTLSFDDSGKLDKVNFHVVEV-RGFEKFLEGRY-IEDAPIFTPRICGICQVSHHLA 71 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 +V+N G+++P+ A+ +R+++ + +HSH L+ G+ Sbjct: 72 SAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGM 110 >UniRef50_A1SE29 NADH-quinone oxidoreductase subunit C n=166 Tax=Bacteria RepID=NUOC_NOCSJ Length = 250 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 47/80 (58%), Gaps = 4/80 (5%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 +AVY+ LSM + + V A+ DAD PS+ P P W ERE DM+G+I G P Sbjct: 150 HAVYHLLSMTHNRRIRLEV-AVPDADP-HIPSIVPVYPTNDWHERETYDMFGIIFDGHPA 207 Query: 135 QRRLVLPDDWPEDMHPLRKD 154 R+++PDDWP HP RKD Sbjct: 208 LTRILMPDDWP--GHPQRKD 225 >UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K (Hydrogenase subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A408_THESM Length = 174 Score = 59.7 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 9/150 (6%) Query: 11 EAILAALKTQFPGAVLDEERQTP---EQVTITVKINLLPDVVQYLY-YQHDGWLPVLFGN 66 E ++ +K +F + + +TP E++ I + N ++++Y ++ G Sbjct: 4 EELIKRIKERFEVEIYTSQTKTPHPRERIWIEISRNDFKELMKYFQEIDPHTQFSIIIGE 63 Query: 67 DERTLNGHYAVYYALSM--EGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 D H + Y L + E + + V + + PS+ P++V ERE ++ Sbjct: 64 DR---GDHLSATYHLELFCENSPSLSVAVITSCPKEDPKIPSLGDVFPSSVPYERENQEF 120 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 G+I G+PD RRL LPDD+PE ++PLR D Sbjct: 121 LGIIFEGIPDSRRLFLPDDFPEGIYPLRLD 150 >UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUS1_CHLT3 Length = 177 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 16 ALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPV-LFGNDERTLNGH 74 AL++ FP A+L E + ++T VK + ++ Q+L + L V + G D Sbjct: 8 ALQSAFPKALL-ETTKFRNELTFRVKKENIREISQFLKEELGFNLCVDICGADRFNEEPR 66 Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 + V Y L M I +K ++ PSV PAA W ERE DM+G++ V PD Sbjct: 67 FEVIYNL-MNLEHNTRIRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIVFVNHPD 125 Query: 135 QRRLVLPDDWPEDMHPLRKD 154 RR+ +P+D+ + P+RK+ Sbjct: 126 MRRIYMPEDF--EYFPMRKE 143 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 6/106 (5%) Query: 197 GHFRL--FVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 GH R+ VD ++ + + RG+E + + R + F + R+CG+C ++H A Sbjct: 15 GHLRIEVVVDENNVIQDAFSTATLWRGLETILKGR-DPRDAGFFTQRICGVCTYSHYKAG 73 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 ++VENALGI+ P A IRS++ LH H ++ H G D Sbjct: 74 ISAVENALGIKPPLNAELIRSLMSISLILHDHTVHF---YHLHGLD 116 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 53/96 (55%), Gaps = 3/96 (3%) Query: 197 GHFR--LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 GH R + VD ++ + RG+E + + R + F+ +R+CG+C H++A Sbjct: 28 GHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKGRDPRDAWAFV-ERICGVCTGCHALAS 86 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 +VENAL I +P+ AH IR I+ + ++H H ++ Sbjct: 87 VRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVHF 122 >UniRef50_B2KDT7 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KDT7_ELUMP Length = 175 Score = 58.9 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 5/86 (5%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 +A+Y+ S EG + ++A++ D+ + S+TP + AV+ ERE+ D+ G+ GLP+ Sbjct: 71 HALYHWGSKEGV---LLTIEAVLPMDNLKLKSITPLIRGAVYYERELADLLGVEVEGLPE 127 Query: 135 QRRLVLPDDWPEDMHPLRK--DAMDY 158 R L +D+P+D +PLRK DA Y Sbjct: 128 GNRYPLDEDFPKDQYPLRKNWDAAKY 153 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 9/127 (7%) Query: 198 HFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNS 257 +L + +I DA Y + RG E + E + + + ++ RVCGICG AH +A TN+ Sbjct: 17 ELKLIWEKGKIKDA-YIIAPNFRGFEFILENKPLLDTLV-ITPRVCGICGHAHLIATTNA 74 Query: 258 -----VENALGIEVPQRAHTIRSILLEVERLHSHL--LNLGLSCHFVGFDTGFMQFFRVR 310 +EN IEV Q+A IR+I L E + +HL L + F+ F+ F+ ++ Sbjct: 75 LENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLKFNKALEDFYPIK 134 Query: 311 EKSMTMA 317 K A Sbjct: 135 GKKWRKA 141 >UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUOC_CHLT3 Length = 240 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 41/83 (49%), Gaps = 2/83 (2%) Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 +G V Y K + VK + PSV A W ERE DMYG++ G Sbjct: 146 DGRLGVVYNFDALATHKHKLTVKVFCSKEDPRIPSVAEIWLTADWHEREAYDMYGIVFEG 205 Query: 132 LPDQRRLVLPDDWPEDMHPLRKD 154 PD RR++ PDDW D +PLRKD Sbjct: 206 HPDMRRILCPDDW--DGYPLRKD 226 >UniRef50_B6YU97 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 1 n=7 Tax=Thermococcaceae RepID=B6YU97_THEON Length = 189 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 Y + L + A ++V V D P ++ P A+ ERE +M G++ G+PD Sbjct: 87 YMSHILLHYDNAPAVSLLVDVRVPKDDPVIPDISDIFPIALQYEREAAEMMGIVFEGIPD 146 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 RRL LPDD+PE ++PLR +D + PE + +P+ +G Sbjct: 147 SRRLFLPDDFPEGIYPLR---LDEKGIPEEIVKNAGHPYYLKG 186 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 6/115 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFR--LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 N+ R + V P IT E GH R + ++ + ++ + RG+E + + R + Sbjct: 13 NNAGRRLVVDP--ITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 F+ +R+CG+C H++A ++E+A+GI+VP A+ IR+I+L H HL++ Sbjct: 70 AFV-ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/318 (19%), Positives = 134/318 (42%), Gaps = 73/318 (22%) Query: 208 IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVP 267 I+D F+ +RG+E+ R + + ++ R+CGICG AH +A ++ENAL +++ Sbjct: 25 IIDFVEIFFWQYRGIEQYLVNRH-FLDALVINPRICGICGHAHLLATAKAIENALNLKIT 83 Query: 268 QRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAEL-------- 319 ++A +R I +E + +H+ L+ + ++++KS + L Sbjct: 84 KKAEILRDITSGLEIIQNHIKWFYLTLYPT----------QIKDKSYILKALNIVKKISK 133 Query: 320 ---LIGSRKTYGLNLI-GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 +IG + + +I GGV D+ ++ L++++R D+ +++ + ++E+ Sbjct: 134 IIAIIGGQFPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDLEKFF 193 Query: 376 QGIGILDRQIARDLR---------FDHPYADYGNIPK----------------------- 403 + L + I + L F P + N+ + Sbjct: 194 EN---LPKNIGKSLNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPLA 250 Query: 404 ---------TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF-SYKPH 453 T++ +++R+ R+ E L ++ + + + D + + F +YK Sbjct: 251 RNLQNKTINTIYEKYQDSIYTRIFARLYEI---LLIINYLIKEIEDLDITQKSFLNYKKR 307 Query: 454 AFALG--FVEAPRGEDVH 469 G +EAPRG +H Sbjct: 308 TCGSGVSVIEAPRGSLIH 325 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 104/214 (48%), Gaps = 30/214 (14%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH--RGMEKLAETRMGYNEVTF 237 ++R I + P +T E GH ++FV+ + D V+ RG EK+ M N + Sbjct: 9 NSRTIRIDP--VTRIE-GHAKVFVNLAEDGSLDNAGLVVNELRGFEKIL-VGMEANRMPH 64 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH-- 295 ++ R+CG+C AH +A +N++++A G+ P A +R ++ +HSH L+L + Sbjct: 65 ITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLFVLQGPD 124 Query: 296 -FVGFDT--------GFMQ--------FFRVREKSMTMAELLIGSRKTYGL-NLIGGVRR 337 +G D G +Q R+R + E ++G R T+ + ++ GG+ Sbjct: 125 LVLGLDADPAIRNVVGIVQANPEVAKKALRIRTVGQRLNE-IVGGRGTHPVTSVAGGITF 183 Query: 338 DILKEQRLQTLKLV---REMRADVSELVEMLLAT 368 + E+R LV +++ D++ +V+ L+ T Sbjct: 184 VLDSEKRAMLQSLVDEGKQLAKDLAPVVKQLVVT 217 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/392 (20%), Positives = 153/392 (39%), Gaps = 69/392 (17%) Query: 192 TSDEPGHFRLF--VDGEQIVD-ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 T+ GH +L VD + IV+ +Y RG EK + +S R CGIC Sbjct: 10 TTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVS-RFCGICPI 68 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN-LGLSCHFVGFDTGFMQFF 307 AH+ + ++E+A GI P+ +R + ++HSH L+ ++ F+ Sbjct: 69 AHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRVEYIT 128 Query: 308 RVREKSMTMAELL--IGSRKTYGLNL-IGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 R+++ T ++ IG + N+ +GG+ + I + +E E VE Sbjct: 129 RIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKEQVEY 188 Query: 365 LLATPNMEQRT--QGIGILDRQIARDLRF---DHPYADYGNIP-KTLFTFTGGDVFSR-- 416 L+ P E RT G I ++ D + D Y + NI K + +T DV+ + Sbjct: 189 LI--PIFENRTLVDGTEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEKEV 246 Query: 417 -----------------------------------VMVRVKETFDSLAMLEFALDNMPD- 440 + + + ++++ ++ A++ + + Sbjct: 247 AVQACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEIIEEL 306 Query: 441 ---------TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 P+L +G LG EA RG + H + + + ++ + AT N Sbjct: 307 NVDGLTRAKDPILGDG-----EKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWN 361 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 P++ + + A ++ + DPC SC + Sbjct: 362 IPLIGKAVEAH-YKFAEHVVRAYDPCVSCATQ 392 >UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCD3_THET1 Length = 179 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 2/64 (3%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 I +K VD D + PS+T A WGERE DM+G++ G PD RR++LP+DW +D P Sbjct: 101 IRMKVRVD-DGQHVPSLTGLWELANWGERETYDMFGIVFEGHPDLRRILLPEDW-QDGFP 158 Query: 151 LRKD 154 LRKD Sbjct: 159 LRKD 162 >UniRef50_A4J658 NADH-quinone oxidoreductase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J658_DESRM Length = 147 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 3/78 (3%) Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 V Y L + G + + VK +D ++ E PS+ P A+W ERE+ D+ G++ PD R Sbjct: 65 VVYNLCIIGHPEM-LHVKTRLDRNNPEVPSMVPIWGGAIWQEREVFDLLGIVFTDHPDLR 123 Query: 137 RLVLPDDWPEDMHPLRKD 154 R++L DDW + HPLR+D Sbjct: 124 RILLADDW--EGHPLRRD 139 >UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=Actinomycetales RepID=NUOC_SALAI Length = 245 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/91 (40%), Positives = 49/91 (53%), Gaps = 7/91 (7%) Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D R L +AVY SM + I ++A V + PSVT P A W ERE D Sbjct: 137 LGADARRL---HAVYQLTSM--TYRRQIRLEAAVSVEDPHLPSVTGVYPTADWQEREAYD 191 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 M+G++ G P R+++PDDW + HP RKD Sbjct: 192 MFGIVFDGHPGLTRILMPDDW--EGHPQRKD 220 >UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3S3_9FIRM Length = 162 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 10/145 (6%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 A+L ALK F A D E + P + + L +++ L + DG L + + + Sbjct: 9 AMLEALKVAFSSAEYDAETERP---ALYIAAEELLGLLRVL--RDDGTLQLTRLENVTAV 63 Query: 72 N--GHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + + + Y L E W+ +K + D+ PSVTP P A + ERE+ D+ G++ Sbjct: 64 DWKDRFEMVYHL-FSPTELHWLTLKVTLPHDAPVLPSVTPVFPGAEFEEREVYDLMGIVF 122 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKD 154 G PD RR+ DD+ HPLRKD Sbjct: 123 TGHPDLRRVFHADDFIG--HPLRKD 145 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/209 (25%), Positives = 97/209 (46%), Gaps = 18/209 (8%) Query: 190 HITSDEPGH--FRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 H+T E GH + V ++V+A + + R E + + M + FL+ R+CGIC Sbjct: 13 HLTRVE-GHANIHIHVKNGELVEAQWAIIETPRFFEVMLKG-MSAEQAPFLTSRICGICS 70 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVGFDT--GF 303 +HS+A ++E A+ I P A +R + + E L SH L+L F G + Sbjct: 71 ISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVLPL 130 Query: 304 MQFF-RVREKSMTMAEL------LIGSRKTYGLNLI-GGVRRDILKEQRLQTLKLVREMR 355 M+ +V + + EL R T+ ++L+ GG+ + +Q + L + +E + Sbjct: 131 MESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQLKELLTMTQERK 190 Query: 356 ADVSELVEML--LATPNMEQRTQGIGILD 382 +++ V L PN + T+ I + + Sbjct: 191 LALAQAVTFFEELHIPNFTRETEFISLCN 219 >UniRef50_D2R5G8 NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5G8_9PLAN Length = 166 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 10/145 (6%) Query: 14 LAALKTQFPGAVLDE----ERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDER 69 LAALKT+FP E R + T + +L D +++ + L D + Sbjct: 8 LAALKTRFPALETSEFAGQTRVVLAKNTFERAMTMLRDELKFDLLVDVTCVDYLNFRDAK 67 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 G VY + AE+ I V+ ++ PS+ P A W ERE DM+G++ Sbjct: 68 DRFG--LVYLLANTVTAER--ITVRVYLNEPELTIPSMVPLYAGANWLEREAFDMFGIVF 123 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKD 154 G PD RR+++P+++ + HPLRKD Sbjct: 124 EGHPDLRRIMMPEEF--EAHPLRKD 146 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 2/95 (2%) Query: 197 GHFRLFVDGEQ-IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 GH R+ + E +V + + RGME++ + R + + R+CG+C H+++ Sbjct: 15 GHLRIDCEIENGVVSKAWASGTMWRGMEEIVKNR-DPRDAWMIVQRICGVCTTTHALSSV 73 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 + E+AL I+VP A IR+I+L H H+++ Sbjct: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHF 108 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 10/102 (9%) Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 L I DEP H ++ +A + RG+E + + R EV + R+CG+C Sbjct: 19 LEIEVDEPSH--------KVTNA-VSAGTMWRGIELIVKNR-DPREVWAFTQRICGVCTT 68 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 H++A ++E+AL IE+P+ A+ IR+I+L H HL++ Sbjct: 69 IHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHF 110 >UniRef50_C1TPN9 Ni,Fe-hydrogenase III component G n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TPN9_9BACT Length = 186 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 7/97 (7%) Query: 62 VLFGNDERTLNGHYAVYYAL----SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWG 117 V+ G+DE H ++YY ++E + V V D S+ R+P + Sbjct: 80 VVSGDDE---GDHISLYYHFDLYRAVERGVSLHVTVCVHVPKDDLTVDSLFSRIPGVEYS 136 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 EREI++M+G+ +GLP++ + LPDDW ++ P R+D Sbjct: 137 EREIQEMFGVDHIGLPNKALVFLPDDWNREVFPWRRD 173 >UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase subunit 7 n=1 Tax=Vitis vinifera RepID=UPI0001985C72 Length = 238 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 64/148 (43%) Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 + A A++++VE L EVP RA IR + E+ R+ +H L L VG T + Sbjct: 82 VSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPSL 141 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 REK + E + G+R GGV +D+ ++ + + EL EM Sbjct: 142 WASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEM 201 Query: 365 LLATPNMEQRTQGIGILDRQIARDLRFD 392 +QR IG + Q A+D F Sbjct: 202 STGNRIWKQRLVDIGTVTAQQAKDWGFS 229 >UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9T0_SORC5 Length = 182 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/99 (42%), Positives = 55/99 (55%), Gaps = 10/99 (10%) Query: 59 WLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRV---PAAV 115 +L + G D L VY+ S A+K +V+K +D RE P+V+ V AA Sbjct: 58 YLECITGVDYPDLKKIVVVYHIYSY--AKKHRVVLKVFLD---RESPAVSTLVDVWSAAN 112 Query: 116 WGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 W ERE D+ G+ G PD RRL+LPDDW + HPLRKD Sbjct: 113 WQERECFDLLGVRFEGHPDLRRLLLPDDW--EGHPLRKD 149 >UniRef50_A2BJ95 NAD(P)H-quinone oxidoreductase subunit J n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BJ95_HYPBU Length = 174 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 + V+ +V D S+ PAA+ ERE +M G++ G PD R L+LP+DWPE ++P Sbjct: 77 VAVETVVPRDEPVIDSIHDVYPAALLHEREEHEMLGIVFRGNPDSRHLLLPEDWPEGVYP 136 Query: 151 LRKD 154 LRKD Sbjct: 137 LRKD 140 >UniRef50_C9LVK2 NADH-quinone oxidoreductase n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK2_9FIRM Length = 165 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 16/145 (11%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLY----YQHDGWLPVLFGNDER 69 LA L FP A D E + P + P V++ L + G L + D Sbjct: 11 LAKLVEVFPKATFDAEAEEPAFIVTAAD---FPAVLRALKEKEGFDRLGNLTAVDWKDHI 67 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + VY+ +ME E + VKA +D+ + S T P A + ERE+ D+ G+ Sbjct: 68 EM-----VYHLYNME--ENVKLEVKAALDSAAPVIESATSLYPGAEFEEREVYDLMGVEF 120 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKD 154 + PD RR+++PD++P HPLRKD Sbjct: 121 LSHPDLRRILMPDNYP--AHPLRKD 143 >UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Chloroflexi (class) RepID=NUOC_ROSCS Length = 174 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 7/145 (4%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDER 69 +LA L+ P A+L + +++ V+ + DV ++L + +L L G D Sbjct: 8 VLARLQAALPDALLGSS-EFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENLCGVDYL 66 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + V Y L + A + I +K V + PS+T P A + ERE DM+G++ Sbjct: 67 GREPRFEVVYHL-LSFANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDMFGIVF 125 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKD 154 G P R+++P+DW + HPLRKD Sbjct: 126 TGHPCLDRILMPEDW--EGHPLRKD 148 >UniRef50_B9L171 NADH-quinone oxidoreductase n=2 Tax=Thermomicrobia (class) RepID=B9L171_THERP Length = 204 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%) Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 VK VD D PS+ P A W ERE DM+G++ G PD RR++LP+DW ++ HPLR Sbjct: 115 VKCGVD-DGEMVPSLVPIFAGANWLERECYDMFGIVFEGHPDLRRILLPEDW-DEGHPLR 172 Query: 153 KD 154 KD Sbjct: 173 KD 174 >UniRef50_Q1V2T1 NADH-quinone oxidoreductase n=4 Tax=Bacteria RepID=Q1V2T1_PELUB Length = 202 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 76 AVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQ 135 VY LS E ++ I++ L+ +++ PS+TP PAA W ERE+ DMYG+ PD Sbjct: 73 VVYLFLSHEFNQR--IILSYLI-SENEVIPSLTPIYPAANWMEREVFDMYGVKFKDHPDM 129 Query: 136 RRLVLPDDWPEDMHPLRKD 154 RR++ D+ + HPLRKD Sbjct: 130 RRILT--DYGFEGHPLRKD 146 >UniRef50_C8W5A9 NADH-quinone oxidoreductase n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W5A9_DESAS Length = 174 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 15/153 (9%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 ++ +R A + LK ++P + EQ ITV I +L D +++ D + Sbjct: 25 AALDRVTAAIEELKGKYP------QISVSEQQIITVPIYILLD---FMFDLRDNYAFDFL 75 Query: 65 GND---ERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREI 121 N+ + + V Y L+ C + VKA VD ++ E PS+ P A W ERE+ Sbjct: 76 TNETAVDYPDQQKFEVIYNLNSTTYHDC-LFVKAEVDRENPEIPSIFPVWGGANWQEREV 134 Query: 122 RDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 D+ G++ P+ +R++L D + D +PLR+D Sbjct: 135 YDLLGIVFTDHPNLKRILLDDAF--DGYPLRRD 165 >UniRef50_B0TH79 Proton-translocating NADH-ubiquinone oxidoreductase, chain c n=2 Tax=Heliobacteriaceae RepID=B0TH79_HELMI Length = 149 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%) Query: 68 ERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 +R G VY S++ + + VK A+ + PSVT P A W ERE+ D+ G+ Sbjct: 60 DRKDAGFEVVYQLFSLK--HRLDLRVKTRTAAEEAQVPSVTGIWPGADWMEREVFDLMGV 117 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP 162 G P+ RL+LPD++ + HPLRK D++L+P Sbjct: 118 TFAGHPNMARLLLPDEF--EGHPLRK---DFKLQP 147 >UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31274 Length = 169 Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 6/145 (4%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERT 70 E I L+ + P AVLD E T+ V+ DV+ L + +L L G D Sbjct: 8 ELIAQDLRQKHPDAVLDTLHFRGE-ATLIVEPARARDVLIVLREKGYRFLASLHGVDYYP 66 Query: 71 LNGHYAVYYAL-SMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 +V+Y L M+ ++ I VK + D PSV P A ERE+ DM+G++ Sbjct: 67 EEPRLSVHYQLLDMDTVDR--IAVKVRMPLDDAHVPSVVDLWPGANHPEREVFDMFGVVF 124 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKD 154 G PD RR+++P+D+ + HP R+D Sbjct: 125 DGHPDMRRILMPEDY--EGHPQRRD 147 >UniRef50_Q67KN8 NADH-quinone oxidoreductase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KN8_SYMTH Length = 156 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 I +K + PS+ P A W ERE DMYG+ G P+ RR++LPD+W + HP Sbjct: 76 IHIKVDLPRQGAHIPSIANLYPGANWHERETYDMYGIRFDGHPNHRRILLPDNW-QGGHP 134 Query: 151 LRKDAMDYR 159 L KD D R Sbjct: 135 LLKDFADRR 143 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/202 (23%), Positives = 100/202 (49%), Gaps = 19/202 (9%) Query: 197 GHFRLFVDGEQ--IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 GH + +D ++ I ++++ R E + R + E ++ R+CGIC HS+A Sbjct: 18 GHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIF-EAQHITSRICGICSCGHSLAS 76 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--------HFVGF----DTG 302 + E+ALG+ ++ +R +LL+ E L SH+L++ L FV + Sbjct: 77 IQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHNAV 136 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT-LKLVREMRADVSEL 361 + R+++ + ++L+G R + ++ I G + + + L L+++ MR D++E Sbjct: 137 VRRALRMKKLCNDVCDILVG-RHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMAET 195 Query: 362 VEM--LLATPNMEQRTQGIGIL 381 + + L P+ + T+ +G++ Sbjct: 196 LALAKTLQFPDFYRETEYVGLV 217 >UniRef50_Q1NLI0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=4 Tax=Deltaproteobacteria RepID=Q1NLI0_9DELT Length = 208 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 87 EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPE 146 E C + ++ V + P+++ P A W ERE D +GL+ G PD L+LP+D Sbjct: 140 ELCRVTLRVRVPRSLPQLPTISDIYPGANWHEREAHDFFGLVFTGHPDLSPLLLPED--A 197 Query: 147 DMHPLRKD 154 D HPLRKD Sbjct: 198 DFHPLRKD 205 >UniRef50_B5IS23 Respiratory-chain NADH dehydrogenase, 30 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS23_9EURY Length = 172 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D T H+ +++ E E ++V + P++T P+++ ERE+++ G Sbjct: 68 DRLTAKYHWEMFW----EQGESLSVIVGTSCPKNDPVLPTITDIFPSSLPYEREVQEFLG 123 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 + G+PD RRL LPDD+PE ++PLR D Sbjct: 124 IKYEGIPDPRRLFLPDDFPEGIYPLRLD 151 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 56/96 (58%), Gaps = 4/96 (4%) Query: 197 GHFRLFVDGE--QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 GH R+ V+ E ++ DA + + RG+E + + R + F + R CG+C + H++A Sbjct: 26 GHLRIMVEVENGKVKDA-WSSSQLFRGLEIILKGRDPRDAQHF-TQRACGVCTYVHALAS 83 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 + V++A+ + +P A +R++++ + LH HL++ Sbjct: 84 SRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHF 119 >UniRef50_B8J1D5 NADH-quinone oxidoreductase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1D5_DESDA Length = 186 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%) Query: 17 LKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGND-----ERT 70 L+ FP VLD R+ Q+ + V+ + +++ YL D L L G D E Sbjct: 10 LRGFFPEEVLDV-REFRGQLAVLVRSGRILELLAYLRDVLDMRHLQALCGVDNSRRNEPG 68 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 L+ VY+ S+ ++ I ++A+VD S P A W ERE D+ G+ Sbjct: 69 LSPFEVVYHLYSIR--QRHGIRLRAMVDDPEEGIDSAVPLWTGANWLERETWDLVGIHFR 126 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKD 154 G PD RR++LPDDW HPLRK+ Sbjct: 127 GHPDLRRILLPDDW--QGHPLRKE 148 >UniRef50_A0LDS5 NADH-quinone oxidoreductase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDS5_MAGSM Length = 187 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 76 AVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQ 135 VY LS+ + I VK LVDAD+ PS+T AA W ERE+ +M+G++ G PD Sbjct: 73 VVYQLLSVHKNHR--IRVKTLVDADT-PVPSITGLWKAADWFEREMYEMFGILISGHPDL 129 Query: 136 RRLVLPDDWPEDMHPLRKD 154 RRL+L D+ D PLRKD Sbjct: 130 RRLLL--DYDFDGFPLRKD 146 >UniRef50_D2L5T2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Desulfovibrio RepID=D2L5T2_9DELT Length = 182 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%) Query: 71 LNGHYAVYYALSM-EGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 L Y V Y LS+ +GA + IV++ V D+ E P+++ P A W ERE D YG+ Sbjct: 57 LQEGYEVAYHLSLLDGANR--IVLRLTVPHDAPEVPTISDIYPGADWHERECFDFYGIRF 114 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 G P+ L+LP+D E HPLRK A + P+ Sbjct: 115 AGHPNLYFLLLPEDTTE--HPLRKAASARKSLPD 146 >UniRef50_C6A3Z4 Membrane-bound hydrogenase MBH 2, subunit Mbh2K (Hydrogenase subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z4_THESM Length = 186 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%) Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 IV+K + + P++T + A EREIR+M G+ GL ++R L LPDDWPE +P Sbjct: 96 IVIKFDLPKNKLVLPTITDLMMGAETNEREIREMLGVEFDGLKNKRHLFLPDDWPEGKYP 155 Query: 151 LRKD 154 R+D Sbjct: 156 WRRD 159 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 9/105 (8%) Query: 197 GHFRLFVD---GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 GH ++ +D + DA + + RG EK + R E + ++CGIC +H +A Sbjct: 15 GHAQITIDVDDNNKATDARLNIMEI-RGFEKFLQGR-AVEEAPRIVTQICGICPVSHHLA 72 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +V+ G+E PQ A+ +R ++ + +HSH L+ +F+G Sbjct: 73 AAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHF----YFLG 113 >UniRef50_A1ALK5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Pelobacter propionicus DSM 2379 RepID=A1ALK5_PELPD Length = 159 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/49 (53%), Positives = 32/49 (65%) Query: 106 SVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 S+ R+P + ERE+ DM+G+ GLPD R LPDDWPE PLRKD Sbjct: 96 SIYDRMPNSEIYERELVDMFGIHVTGLPDGSRYPLPDDWPEGQFPLRKD 144 >UniRef50_A9VS96 NADH (Or F420H2) dehydrogenase, subunit C n=15 Tax=cellular organisms RepID=A9VS96_BACWK Length = 485 Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 H VY L G K + VK +D ++ + SVTP A W ERE D+ G++ G P Sbjct: 400 HMEVYVHLFSYGK-KQSVAVKVKLDREAPQVKSVTPLWKGADWPERETYDLLGIVFEGHP 458 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDY 158 + R+++PDDW +PLRKD Y Sbjct: 459 NLSRILMPDDWV--GYPLRKDYEPY 481 >UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydiaceae RepID=D1RAG7_9CHLA Length = 173 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 74/146 (50%), Gaps = 9/146 (6%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDER 69 EAI LK P A+L ++Q + T+ V+ L V+ YL + ++ L L G D Sbjct: 4 AEAI-ENLKNHCPEAIL-AQKQFLGETTLEVQKENLIKVLSYLKHDYEV-LMDLTGVDYV 60 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSRE-FPSVTPRVPAAVWGEREIRDMYGLI 128 + V Y L K + ++ +V + E PSVT A W ERE+ D++G+ Sbjct: 61 DPTPYTKVVYWLH---NPKNFERIRVIVFVEREEPIPSVTCLWDGAAWYERELFDLFGVP 117 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKD 154 G PD +R+++PDDW HPLR+D Sbjct: 118 IEGHPDLKRILMPDDW--KGHPLRRD 141 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 3/92 (3%) Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 L + +I DA R+ RG+E++ E R + + ++ RVCGICG AH +A Sbjct: 15 AQLELVWENGRIRDARVRI-PSSRGIERVLEGR-PFMDALVITPRVCGICGHAHLMACVK 72 Query: 257 SVENALG-IEVPQRAHTIRSILLEVERLHSHL 287 ++E+A+G + + Q+A +R I L VE + +H+ Sbjct: 73 ALEDAIGHVRLSQKAKLVRDITLMVEMIQNHI 104 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 2/95 (2%) Query: 197 GHFRLFVDGE-QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 GH R+ ++ + + + + RG+E + + + F+ R+CG+C HS+A Sbjct: 16 GHLRIELEADDKKISKAWAETTQFRGIETVVKGHDPRDVWAFVG-RICGVCTGTHSIASV 74 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 +VE+A I +P +A IR ++LE + +H H+++ Sbjct: 75 AAVEDAFDITLPDQARRIRELILESQEVHDHVVHF 109 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 16/121 (13%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRL--FVDGEQIVD--ADYRLFYVHRGMEKLAETRMG 231 +G D V PV + GH R+ V+ +I+D + +LF RG+E + + R Sbjct: 13 KGKHDVIVDPVTRIE------GHLRVEAVVENGKIIDVRSSSQLF---RGLEIILKGRDP 63 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLN 289 + F + R CG+C + H++A V+NA+G++ +P+ A IR+++L + +H HL++ Sbjct: 64 RDAQHF-TQRSCGVCTYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVH 122 Query: 290 L 290 Sbjct: 123 F 123 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 45/71 (63%), Gaps = 1/71 (1%) Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+E +A+ R + F+ R+CG+C H++A +VE+A+GI +P+ A+ IR+I+ Sbjct: 40 RGIELVAKDRDPRDLWAFVQ-RICGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHS 98 Query: 280 VERLHSHLLNL 290 +H H+++ Sbjct: 99 SLDVHDHIVHF 109 >UniRef50_A1W1H6 NADH-quinone oxidoreductase n=18 Tax=Campylobacter RepID=A1W1H6_CAMJJ Length = 263 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 5/82 (6%) Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 NG Y L++E +K + +K V R SV A W EREI DM+G+ + Sbjct: 96 NGFEVFYQLLNLE--KKLRVRIKTFVGVKER-LQSVAHVFKGANWSEREIYDMFGIFIIN 152 Query: 132 LPDQRRLVLPDDWPEDMHPLRK 153 P+ +R+++PDDW HPL K Sbjct: 153 HPNLKRILMPDDWF--GHPLLK 172 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 25/185 (13%) Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG E+ R EV + R+CGIC AH +A +++ A G+E+P+ A +R ++ Sbjct: 39 RGFEQFVVGRPA-EEVPRIVPRICGICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHI 97 Query: 280 VERLHSHLLNLGL--SCHFV---GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI-- 332 +HSH L+ + FV D V +K+ +A+ I RK +G ++ Sbjct: 98 GNMIHSHALHFYFLAAPDFVLGPDADPAIRNIVGVIDKAPDVAKQAIALRK-FGQKIVEA 156 Query: 333 -------------GGVRRDILKEQRLQTLKLVREMRADVSELVEML--LATPNMEQRTQG 377 GG + + +E+R + LK +M VE++ L MEQ + Sbjct: 157 VGGKAIHPVTGIPGGQAKRLTEEERDELLKDADQMIEYAKNGVELIKQLNEQYMEQ-IKT 215 Query: 378 IGILD 382 +G++D Sbjct: 216 LGVID 220 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 85/361 (23%), Positives = 140/361 (38%), Gaps = 55/361 (15%) Query: 203 VDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENAL 262 V+ +IVDA RG EK+ + R ++ L+ R+CGIC +H++A T ++ENAL Sbjct: 22 VENNKIVDAK-STGSQFRGFEKMFQGRPPL-DIIRLAPRICGICSTSHAIAATLALENAL 79 Query: 263 GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIG 322 I IR I E L +HL + +F F F ++ + + G Sbjct: 80 NITPDFNGKVIRDIAHGFEFLQNHL----RTTYFFAFP----DFVKITASNPLYKD---G 128 Query: 323 SRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL--------------VEMLLAT 368 + K L + + I E L+ +K RE ++ L + + Sbjct: 129 TDKELDYRLPEDITKKI-NEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDV 187 Query: 369 PNMEQRTQGIGILDRQIARDLRFD-----HPYADYGNIPKTLFTFTGGDVFSRVMVRVKE 423 P E I ++ I L D Y DY N+ K ++S +K Sbjct: 188 PEKESVKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLYSDYKAPIKY 247 Query: 424 TFDSLAMLEFALDNMPDTPLLTEGFSYK----PHAFALGFVEAPRGEDVHWSMLGDNQKL 479 T ++ AM+ +N+ D +TE Y P + V + + + Q Sbjct: 248 T-EASAMINGKKENI-DVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPY------KQDA 299 Query: 480 FRWRCRAATYANW-----PVLRYMLRG---NTVSDAPLIIGS-LDPCYSCTDRVTLVDVR 530 + W AA Y N+ P+ R +L G N +S I+ L+ C + L+D+ Sbjct: 300 YSW-VDAARYKNYSMEGGPLARQILNGYYENKISAMDRILARVLESVKICESIIGLIDLM 358 Query: 531 K 531 K Sbjct: 359 K 359 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 53/87 (60%), Gaps = 2/87 (2%) Query: 201 LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVEN 260 ++++ ++VDA + ++ RG E++ R ++ V F + R+CGIC AHS+A + ++E+ Sbjct: 21 VYIENNRVVDAKTK-GHLFRGFEQMLVGRSPFDAVYF-TQRICGICSAAHSIASSLALED 78 Query: 261 ALGIEVPQRAHTIRSILLEVERLHSHL 287 AL I ++ +R I+ E L +H+ Sbjct: 79 ALNIHPLEQGRYLRDIIHCCEFLQNHV 105 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 9/112 (8%) Query: 171 YPFINEG---NSDARVIPVGPLHITSDEPGHFR--LFVDGEQIVDADYRLFYVHRGMEKL 225 YP+ +G ++ R I V P +T E GH R + +D ++ + RG+E + Sbjct: 3 YPYQTQGFTLDNSGRRIVVDP--VTRIE-GHMRCEVNIDSNNVITNAVSTGTMWRGLEVI 59 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 + R + F+ +R+CG+C H++ +VENALGI +P A+ IR L Sbjct: 60 LKGRDPRDAWAFV-ERICGVCTGTHALTSIRAVENALGIAIPDNANCIRKKL 110 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 762 0.0 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 680 0.0 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 639 0.0 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 614 e-174 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 584 e-165 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 582 e-164 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 574 e-162 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 571 e-161 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 567 e-160 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 551 e-155 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 547 e-154 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 545 e-153 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 540 e-152 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 526 e-148 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 525 e-147 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 513 e-144 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 512 e-143 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 505 e-141 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 505 e-141 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 493 e-138 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 484 e-135 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 484 e-135 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 470 e-131 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 467 e-130 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 467 e-130 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 465 e-129 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 462 e-128 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 462 e-128 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 457 e-127 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 451 e-125 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 447 e-124 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 445 e-123 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 440 e-122 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 437 e-121 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 428 e-118 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 428 e-118 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 428 e-118 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 422 e-116 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 421 e-116 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 418 e-115 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 415 e-114 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 414 e-114 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 414 e-114 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 414 e-114 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 414 e-114 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 412 e-113 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 411 e-113 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 411 e-113 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 411 e-113 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 410 e-113 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 408 e-112 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 408 e-112 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 404 e-111 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 403 e-111 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 403 e-110 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 402 e-110 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 401 e-110 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 400 e-110 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 400 e-110 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 400 e-110 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 400 e-110 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 400 e-109 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 400 e-109 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 399 e-109 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 398 e-109 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 398 e-109 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 397 e-109 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 396 e-109 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 396 e-108 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 396 e-108 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 395 e-108 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 394 e-108 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 393 e-108 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 393 e-107 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 392 e-107 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 390 e-107 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 390 e-107 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 390 e-107 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 390 e-106 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 389 e-106 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 389 e-106 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 388 e-106 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 388 e-106 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 388 e-106 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 388 e-106 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 386 e-105 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 386 e-105 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 386 e-105 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 386 e-105 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 385 e-105 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 385 e-105 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 384 e-105 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 384 e-105 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 384 e-105 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 383 e-105 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 381 e-104 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 381 e-104 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 381 e-104 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 380 e-104 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 380 e-104 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 379 e-103 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 378 e-103 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 377 e-103 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 377 e-103 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 377 e-103 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 376 e-102 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 376 e-102 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 375 e-102 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 373 e-101 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 373 e-101 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 372 e-101 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 371 e-101 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 371 e-101 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 369 e-100 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 369 e-100 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 368 e-100 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 367 e-100 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 365 3e-99 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 363 7e-99 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 363 1e-98 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 362 2e-98 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 359 1e-97 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 359 2e-97 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 358 3e-97 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 358 4e-97 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 356 1e-96 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 354 4e-96 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 351 3e-95 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 351 4e-95 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 350 1e-94 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 349 1e-94 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 349 1e-94 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 349 2e-94 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 347 5e-94 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 347 6e-94 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 346 1e-93 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 346 2e-93 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 344 7e-93 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 343 9e-93 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 343 9e-93 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 343 1e-92 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 343 2e-92 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 342 2e-92 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 340 9e-92 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 339 1e-91 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 338 3e-91 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 336 1e-90 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 331 4e-89 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 331 4e-89 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 328 3e-88 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 325 2e-87 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 324 4e-87 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 324 5e-87 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 321 5e-86 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 318 3e-85 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 317 6e-85 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 316 2e-84 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 316 2e-84 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 306 2e-81 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 300 8e-80 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 300 9e-80 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 295 3e-78 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 286 1e-75 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 286 2e-75 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 284 9e-75 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 281 4e-74 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 273 1e-71 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 267 9e-70 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 257 8e-67 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 257 1e-66 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 252 2e-65 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 239 2e-61 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 228 5e-58 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 228 5e-58 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 223 1e-56 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 218 4e-55 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 212 3e-53 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 210 1e-52 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 202 4e-50 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 200 2e-49 UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, s... 189 2e-46 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 184 6e-45 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 180 1e-43 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 176 2e-42 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 175 6e-42 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 174 1e-41 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 172 2e-41 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 166 2e-39 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 160 1e-37 UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase ... 160 2e-37 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 157 8e-37 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 153 2e-35 UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 150 1e-34 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 150 2e-34 UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus K... 146 1e-33 UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermac... 145 6e-33 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 144 1e-32 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 143 2e-32 UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Ch... 141 8e-32 UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpet... 139 2e-31 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 139 2e-31 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 138 7e-31 UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydi... 136 3e-30 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 135 4e-30 UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=ce... 132 3e-29 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 131 5e-29 UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 131 9e-29 UniRef50_A4GJ20 NADH-quinone oxidoreductase n=1 Tax=uncultured m... 131 9e-29 UniRef50_Q9KGW7 NADH dehydrogenase I subunit C n=3 Tax=cellular ... 130 2e-28 UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C... 129 2e-28 UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacte... 128 5e-28 UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculu... 128 6e-28 UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium ce... 128 8e-28 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 126 2e-27 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 124 6e-27 UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=A... 124 7e-27 UniRef50_C9RJJ7 NADH (Or F420H2) dehydrogenase, subunit C n=1 Ta... 124 7e-27 UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K ... 124 8e-27 UniRef50_B8J1D5 NADH-quinone oxidoreductase n=1 Tax=Desulfovibri... 123 1e-26 UniRef50_A9GUY8 NADH-quinone oxidoreductase n=1 Tax=Sorangium ce... 123 1e-26 UniRef50_Q2G5Y5 NADH-quinone oxidoreductase subunit C n=36 Tax=A... 121 6e-26 UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Ch... 121 6e-26 UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit... 121 7e-26 UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxoba... 121 8e-26 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 121 8e-26 UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit,... 121 9e-26 UniRef50_C6XG24 NADH-quinone oxidoreductase n=1 Tax=Candidatus L... 120 1e-25 Sequences not found previously or not previously below threshold: UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=... 197 1e-48 UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit ho... 190 1e-46 UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (N... 187 1e-45 UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Glucono... 171 5e-41 UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6... 162 3e-38 UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein... 154 1e-35 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 144 1e-32 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 140 1e-31 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 140 1e-31 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 133 1e-29 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 133 2e-29 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 132 4e-29 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 129 3e-28 UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacteri... 128 6e-28 UniRef50_B3DXN6 NADH-quinone oxidoreductase n=1 Tax=Methylacidip... 124 6e-27 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 124 7e-27 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 124 1e-26 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 123 2e-26 UniRef50_B2UPT7 NADH-quinone oxidoreductase n=1 Tax=Akkermansia ... 123 3e-26 UniRef50_Q466A9 F420H2 dehydrogenase subunit C n=4 Tax=Methanosa... 122 3e-26 UniRef50_A5G9B7 NADH-quinone oxidoreductase subunit C n=9 Tax=De... 122 4e-26 UniRef50_B4UIA8 NADH (Or F420H2) dehydrogenase, subunit C n=4 Ta... 120 1e-25 UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Al... 120 2e-25 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 762 bits (1969), Expect = 0.0, Method: Composition-based stats. Identities = 555/555 (100%), Positives = 555/555 (100%) Query: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL Sbjct: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 Query: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE Sbjct: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD Sbjct: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD Sbjct: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD Sbjct: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE Sbjct: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR Sbjct: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF Sbjct: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK Sbjct: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 Query: 541 EIERYGIDRNRSPLK 555 EIERYGIDRNRSPLK Sbjct: 541 EIERYGIDRNRSPLK 555 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 680 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 399/568 (70%), Positives = 466/568 (82%), Gaps = 17/568 (2%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD-ARV 183 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE V Sbjct: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 Query: 364 MLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFT 407 +LL+TPNMEQRT GIG LD +I ARD R DHP+ YG +P + + Sbjct: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 Query: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 262/562 (46%), Positives = 377/562 (67%), Gaps = 22/562 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 +N E + ++ + G +L E+ P+Q+ + V+ LP+V Y+YY+ G+L + G+ Sbjct: 2 NNGMERLEEKIRKEIGGLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGS 61 Query: 67 DERTLNGHYAVYYALS----MEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 DER+L+G Y +YY S E +K W+VV + +F SVTP++PAA W ERE+R Sbjct: 62 DERSLHGAYRLYYVFSIEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVR 121 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 D+ GL+P PD RRLVLPDDWPE +HPLRK+ P E P + Sbjct: 122 DLLGLVPENHPDPRRLVLPDDWPEGVHPLRKEFTYTERPPSVARKCEFRP--SVEGEGIM 179 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +P+GP+H +DEPG FR+F+DGE++VD DYR+FYVHRG+EKLAE+R+ YN+V F+++R+ Sbjct: 180 QVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERI 239 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGICG+AHS AY +VE ALGIEVP+RA IR+++LEVERLHSHLLNLGL+CH GFD G Sbjct: 240 CGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWG 299 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM FF+ REK M MAELL G RKTYG+N++GGVRRDI +++ + L++++E+ + ++ Sbjct: 300 FMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVL 359 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 + +L+T + R + +G+L R +A RD R DHPYA Y + + Sbjct: 360 DAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVP 419 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV +R+ VR +ETF++++++ L+NMP P+ E Y+P+A LG+VEAPRGE Sbjct: 420 VHSEGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGE 479 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 DVH+ + G + K++RWR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+RV + Sbjct: 480 DVHFVITGPHSKVYRWRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIV 539 Query: 527 VDVRKRQSKTVPYKEIERYGID 548 VDV+ +++ PY+ + Sbjct: 540 VDVKSGRTRVFPYEYLVSLSRK 561 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 236/561 (42%), Positives = 346/561 (61%), Gaps = 25/561 (4%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDE 68 L + +F + D ++ Q ITV+ LP++V Y + L + DE Sbjct: 28 EYLDEIIEKFGEKIRDVKQAAYNQWIITVEREDLPEIVLYFLNHPEWKETQLSSMVATDE 87 Query: 69 RTLNGHYAVYYALSMEG-AEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 R LNG +++ Y LS+ G A ++ V+A + D F S+ + A W ERE +M GL Sbjct: 88 RPLNGKFSITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAMEMLGL 147 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVG 187 G PD RRLVLPDDWP ++PLRKD P + YP+ E D V+P G Sbjct: 148 TAEGHPDPRRLVLPDDWPSCVYPLRKDFHYSNSPP----GEKFYPY-KEPKKDEIVVPYG 202 Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 P H+ +E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R+CGICG Sbjct: 203 PYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICG 262 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 HS AY +VENA GIEVP+RA IR+I+LE+ERLHSHLLN G+ H VG+D GFM+ + Sbjct: 263 CTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYGFMKAW 322 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA 367 R+RE M +AE L G+RKTYG+ L+GGVRRD+L+ ++ ++++++ + SELV+ ++ Sbjct: 323 RIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELVDEAIS 382 Query: 368 TPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGG 411 T +R +G+G+L ++A+ D+R DHPYA Y + + + G Sbjct: 383 TSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVPVYKEG 442 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 DV +R +VR++E F+S+ ++E ALD MP +L E P++ A+G EAPRGE++H+ Sbjct: 443 DVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRGENIHYV 502 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRK 531 M G+N K++R+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+RV +VDV Sbjct: 503 MTGENNKVYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQVVDVES 562 Query: 532 RQSKTVPYKEIERYGIDRNRS 552 + + + E + I +R Sbjct: 563 GKVRVLSETEFNKLSIKASRR 583 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 230/562 (40%), Positives = 334/562 (59%), Gaps = 32/562 (5%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDERT 70 L F + + +R T Q + +LPD V + + + L G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLWWHNHPEFKETHLSTAVGTDERP 99 Query: 71 LNGHYAVYYALSMEGA-----EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 LNG + L+++ E W+ +KA + AD FPSV ++PAA+W ERE++D+ Sbjct: 100 LNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDLL 159 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIP 185 G PVG PD RRL+LP+DWPE ++PLRKD MDYR P +E E ++P Sbjct: 160 GFNPVGHPDPRRLILPEDWPEGVYPLRKD-MDYRHSPMAEVKTE----YRETPEGTTLVP 214 Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP+H +EP HFRLFV GE+IVD DYR FY HRG+EK E R+ YN+V FL++R+CGI Sbjct: 215 MGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICGI 274 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 CG+ HSV+Y +VE +++P RA IR+++LE+ER+H+HLL +G++ H VG+DTGFM Sbjct: 275 CGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFMH 334 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 +R+RE M + E L G+RK YG+N++GGVRRDIL ++ + LK+V+++R + + +++ Sbjct: 335 AWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDIA 394 Query: 366 LATPNMEQRTQGIGILDRQIAR----------------DLRFDHPY---ADYGNIPKTLF 406 L T +R +G+GIL ++A+ D R D Y + + Sbjct: 395 LNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKVP 454 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV +RV+VR+ E F+SL ++E +D MP ++ + ALGF EA RGE Sbjct: 455 VYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHRGE 514 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 VH+ M G+ K++RW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+RV Sbjct: 515 VVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQF 574 Query: 527 VDVRKRQSKTVPYKEIERYGID 548 VDV + K + E I Sbjct: 575 VDVETGKVKVLTEAEFNELSIK 596 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 582 bits (1500), Expect = e-164, Method: Composition-based stats. Identities = 215/513 (41%), Positives = 320/513 (62%), Gaps = 22/513 (4%) Query: 37 TITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKAL 96 V + + ++ + L+ + + G DER +NG +A+Y+ + + E ++V+K Sbjct: 20 VAEVGASNIREIARALF-ERGYYYSSGMGVDERPINGRFAMYHIFNCD-TEGRYVVLKIT 77 Query: 97 VDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 S E PS+TP + A W ERE DM G++ G P RL+LPDDWPE ++PLRKD Sbjct: 78 SPEGSPEVPSITPVIKGAEWSEREAMDMLGIVFSGHPKPERLILPDDWPEGVYPLRKDFP 137 Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 + P + E D IP+GP H + EP +F L+V G+++VDA+YR F Sbjct: 138 YNKKLPPSKPIEKE----REHKKDVMEIPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGF 193 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 ++HRGMEKLAE+RM N++ FL++R+CGICG HS AY +VE+A GI VP+RA IR+I Sbjct: 194 HIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDAAGIYVPERAQYIRTI 253 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 +LEVER+HSHLL G+ CH +GFD+GFM +R RE M +AEL+ G+RKTYG+N++GGVR Sbjct: 254 MLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAELITGNRKTYGINIVGGVR 313 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------- 387 RDI ++++ +TLKL+ + + E+++ + + +R +G+G+L ++ AR Sbjct: 314 RDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVGVLPKKEAREIGVVGPMA 373 Query: 388 -------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 D+R DHPYA Y ++ + + GDVF+R +VR +E F+S M+ AL+NMP Sbjct: 374 RSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNMIRQALENMPP 433 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 L+ + + P +G EAPRGE++H + ++RW RAATY N P + MLR Sbjct: 434 GELINDEYEIPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHPRAATYNNLPAVPIMLR 493 Query: 501 GNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 GN V+DAPLII S+DPC+SCTD V+++D + Sbjct: 494 GNDVADAPLIIASIDPCFSCTDHVSIIDSESGK 526 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 192/534 (35%), Positives = 290/534 (54%), Gaps = 23/534 (4%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFG 65 S+NR + + L QF G + ++ ++ K L +V Y+ + L + Sbjct: 3 STNR-QLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMIC 61 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 NDERTL+ H+ +YY S++ E +++V V EFPS+TP++PAA W EREI+DM+ Sbjct: 62 NDERTLDKHFKIYYVFSLQR-EDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMF 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIP 185 GLIPVG P LVL ++PE+ +PLRKD P + PF IP Sbjct: 121 GLIPVGHPRPETLVLHGNFPENTYPLRKDFDIQTRIPHLESKL---PFFRVEGEGVFEIP 177 Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 VGP+H EPGHFR G+ I D +LF+ H+G EK+ ET M Y + FL++R+CG+ Sbjct: 178 VGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGV 236 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 C +H+ Y ++E IE+P RA IR+I++E+ER+++H+ ++G C F G Sbjct: 237 CAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAH 296 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 FR+RE + E + G+R G+ IGGVR DI + L L+ ++ D +L +M+ Sbjct: 297 GFRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMM 356 Query: 366 LATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTF- 408 + ++ R + G L +IAR D R +HPYA Y + + F Sbjct: 357 FKSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFH 416 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 GDV +R+ VRV E + S+ ++E + M PL T P+ AL +VE+PRGE++ Sbjct: 417 YEGDVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENI 476 Query: 469 HWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +W M KLFR++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 477 YWIMTAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 203/550 (36%), Positives = 316/550 (57%), Gaps = 21/550 (3%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERT 70 + IL + +FPG V P+++ + + + Y++ G L D Sbjct: 5 QTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCTDMGP 64 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + G Y + YA S++ AE + + D + P++T +P A W ERE DM G++ Sbjct: 65 VTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLGVVAE 123 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR--VIPVGP 188 G P+ RRL+L +DWPED+ P+RKD P + T P + ++++ +I VGP Sbjct: 124 GHPNPRRLLLSEDWPEDLFPMRKDFPH--DFKPPKAEKITTPLRDPLGNESKATIISVGP 181 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 T DEP +FRLF +GE+I+ +DYR F+ HRG+EKL++T + YN+V F+++RVCGICGF Sbjct: 182 FFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGF 241 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 HS Y +VE+A GIE+P RA IRSI++E+ERLHSHLL LGL+ H++GFDT MQ +R Sbjct: 242 VHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQSWR 301 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 +RE M + E + G+RKTYG+NL+GGVRRD+ + + V ++ + EL+ + Sbjct: 302 IREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVAGD 361 Query: 369 PNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGD 412 +++ R +G+L + AR D R D+PYA + ++ GGD Sbjct: 362 ESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEGGD 421 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 +++R +VRV E S+ +++ + +P+ ++ G EAPRGE VH+ Sbjct: 422 IWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWREGYGIAEAPRGECVHYVQ 481 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKR 532 G + + +RWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+RV VD + + Sbjct: 482 TGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVDTKSK 541 Query: 533 QSKTVPYKEI 542 +T K++ Sbjct: 542 AIRTYTEKDL 551 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 223/517 (43%), Positives = 324/517 (62%), Gaps = 23/517 (4%) Query: 34 EQVTI-TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIV 92 ++VT+ V + ++ + L+ + G DER +N +A+Y+ + E AE+ ++ Sbjct: 16 DRVTVAEVSPERVREIAKGLF-NAGCYYSCGMGVDERPVNMRFAMYHVFNCE-AERRHVI 73 Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 +K + PS+TP + A W ERE DM G+I G P+ RL+LP+DWPE ++PLR Sbjct: 74 LKLTTPTNELTLPSITPVIEGASWSEREAMDMLGIIFEGHPEPERLILPEDWPEGVYPLR 133 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 KD Y + P E + D +P+GP H T EP +F L+V G++IVDA Sbjct: 134 KDFP-YNKKLPPAKPKEG---RKKPRPDIIEVPLGPYHPTLHEPEYFELYVKGDKIVDAK 189 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 YR F++HRGMEKLAE+RM N+V FL++R+CGICG HS AY +VE+A I VP+RA Sbjct: 190 YRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIYVPERARY 249 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR+I+LEVERLHSHLL G++CH +GFD+GFM +R RE M +AEL+ G+RKTYG+NLI Sbjct: 250 IRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREYIMDIAELITGNRKTYGINLI 309 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ-------- 384 GGVRRDI +E++ + L+L+ D E+++ ++ +++R + +G+L ++ Sbjct: 310 GGVRRDIPEEKKRKVLELLDLAEKDSREILDNVVKMGELKERMENVGVLPKKKGREIGVV 369 Query: 385 --IAR------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 +AR D+R DHPYA YG++ + + G DV SR +VR ETF S +M+ ALD Sbjct: 370 GPVARASGIDTDVRRDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQALD 429 Query: 437 NMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 NMP+ L+ E + LG EAPRGEDVH + K++RW RA+TY N P + Sbjct: 430 NMPEGELINEDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRASTYNNLPAVP 489 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 MLRGN ++DAP+II S+DPC+SCTD V+++D + Sbjct: 490 VMLRGNDIADAPIIIASIDPCFSCTDHVSIIDSENGR 526 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 202/535 (37%), Positives = 315/535 (58%), Gaps = 22/535 (4%) Query: 25 VLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSME 84 + D+ T E + + K + + +V + L Q L D + Y S+ Sbjct: 11 ITDKVETTDENLIVYSKPSQIKEVAKLLVMQ-GARFAHLTAIDFINQKNQIELNYFFSL- 68 Query: 85 GAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW 144 + ++VK ++A S++ +PA +W ERE D++G+ G PD RRLVLPD+W Sbjct: 69 IDDSMNVIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNW 128 Query: 145 PEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVD 204 P+++HPLRK+ PE + + + VIP+GP + + +EP +FRL VD Sbjct: 129 PQEVHPLRKNFSYNSKPPESKQPA----PLKKPEEGKTVIPIGPFYPSLEEPAYFRLIVD 184 Query: 205 GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI 264 GE+I D DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A GI Sbjct: 185 GEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAGI 244 Query: 265 EVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSR 324 E+P RA IRS+ LE+ERLHSHLL +GL+ H VGFDT FMQ +R+RE M + E++ G+R Sbjct: 245 EIPLRAKFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGNR 304 Query: 325 KTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ 384 KTYG+N++GGV D+ + K++ ++ +V EL E++L ++ R + +G+L Sbjct: 305 KTYGINIVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKYD 364 Query: 385 IAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSL 428 A+ D+R + PYA Y + + GDV++R +VR++E S+ Sbjct: 365 DAKKYCVCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILISI 424 Query: 429 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 ++ L+N+P+ P + +P A+ ++EAPRG+ H+ M G + +RW RA + Sbjct: 425 NIIRQILENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAPS 484 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIE 543 Y N+ L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ K +E++ Sbjct: 485 YQNYQALSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEELK 539 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 547 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 203/554 (36%), Positives = 316/554 (57%), Gaps = 20/554 (3%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNG 73 L LK +F A+ + ++ + + + + QY++ D + G+D+R +G Sbjct: 6 LQQLKDKFGSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVISIGSDDRPYSG 65 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + V++ + + EK + + ++ S++ +PAA W ERE++D+ G+ PVG P Sbjct: 66 KFLVFHQFAFD-KEKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGHP 124 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITS 193 +RLVLPD WP+ HPLRKD + PE + + F +E +P GP H T Sbjct: 125 YPKRLVLPDAWPDGHHPLRKDF-AWNKIPEGYDEEREFDF-DETPPGCTAVPFGPFHPTL 182 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+CGICG HS+A Sbjct: 183 DEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLA 242 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 + +VEN G+ VP RA IR+I+LE+ERLHSH + +GL+CH VGFDT FMQ +R+RE Sbjct: 243 FCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIREPI 302 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 M +AE + G+RKTYGL +IGGVR D E +T ++ ++ ++ ++V + N+ Sbjct: 303 MWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNIMA 362 Query: 374 RTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRV 417 RT G+G+ D+ + + D R DHPYA Y + + T DV+ RV Sbjct: 363 RTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWGRV 422 Query: 418 MVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAF-ALGFVEAPRGEDVHWSMLGDN 476 +VR+ E F+S+ ++ D MP PL+ + + P +EAPRGE H+++ GD+ Sbjct: 423 VVRMLEVFESINIIRQCFDKMPQGPLVADITTELPAGRVGYTSIEAPRGESHHFAITGDD 482 Query: 477 QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKT 536 + RWR RA TY N + M++ ++D + +G +DPC SCTDR+ +D+R K+ Sbjct: 483 NRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRMETIDIRTGARKS 542 Query: 537 VPYKEIERYGIDRN 550 E+ R Sbjct: 543 WTKAELLSLSRSRK 556 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 220/558 (39%), Positives = 328/558 (58%), Gaps = 30/558 (5%) Query: 8 NRGEAILAALKTQFPGAVLDEERQTPEQ-VTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 NR +++ + + G ++ E + +Q + + + N L V ++ + + + Sbjct: 3 NRIDSVRQHIIEKL-GDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAV 61 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 DER+LNG +A YY ++ A I+VK AD PS+ VPAA W E E D+ G Sbjct: 62 DERSLNGTFASYYIFGLDAAH-LNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLG 120 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPV 186 + R VLPD+WPE ++PLRKD +Y RP+P P + IP+ Sbjct: 121 IKFEN-RKVHRFVLPDEWPEGIYPLRKDV-EYTYRPKPRKVPRQPPT-------GQRIPI 171 Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAE-TRMGYNEVTFLSDRVCGI 245 GP H EP +F L+V+GE++VD +Y F+VHRG+EKLAE R Y ++ FL++R+CGI Sbjct: 172 GPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGI 231 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 CGF HSV+YT SVE A I+VP+RA IRSI+LE+ERLHSHLL +G+ CH +G+D GFM Sbjct: 232 CGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMH 291 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 +R+REK M +AELL GSRKTYG+NL+GGVR+DI ++ + +R++ L +++ Sbjct: 292 TWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLI 351 Query: 366 LATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFT 409 + + +R G GIL R A RD+R D+PYA Y ++ + + Sbjct: 352 TSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVYN 411 Query: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVH 469 GD +R++VR+ E F+S+ +LE +D +P P++ E +G VEAPRGE +H Sbjct: 412 EGDNLARLLVRIDEVFESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVIH 471 Query: 470 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDV 529 ++ + + +RWR RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD+ Sbjct: 472 VTIT-GHGRPYRWRVRAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVDL 530 Query: 530 RKRQSKTVPYKEIERYGI 547 R + ++I + G Sbjct: 531 RSNRRFKASMEQIIKAGR 548 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 178/529 (33%), Positives = 274/529 (51%), Gaps = 24/529 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDER 69 + I + F + R V + + LP V ++ ++ L L D R Sbjct: 3 AKNITNEITAAFGEE-MASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATLHVADTR 61 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + G Y +Y + + +E + ++A V F S+TP + +A W EREI DM+GL P Sbjct: 62 QMTGGYTMYAVMPV-ASENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIADMFGLTP 120 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPL 189 VG PD R LVL D WPED HPLRKDA P YP+ IPVGP+ Sbjct: 121 VGHPDLRPLVLYDTWPEDYHPLRKDAP-----GRPPKVDTYYPYHRVEGEGVFEIPVGPV 175 Query: 190 HITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 H EPGHFR V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R G G A Sbjct: 176 HAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERTSGDNGMA 234 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRV 309 HS AY +VE GIEVP RA IR++ LE+ER+++HL ++G ++ G + + Sbjct: 235 HSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAYIL 294 Query: 310 REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATP 369 RE+ + + E + GSR +N IGGVR+D+ +E + + + + D + V+++ Sbjct: 295 RERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFVDLVNRQT 354 Query: 370 NMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDV 413 ++ RT+ G L + A RD+R DHPYA Y ++ + GDV Sbjct: 355 SILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVHIRKEGDV 414 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 +R+ V++ E ++S++++E ALD +P + + + VEAPRGE +HW + Sbjct: 415 NARMQVKIGEIYESMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGELLHWILS 474 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G+N + FR + R ++ NW + GN V D PL+ S + YS D Sbjct: 475 GENDRPFRHKIRDPSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 169/528 (32%), Positives = 258/528 (48%), Gaps = 21/528 (3%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 + L+ +F G + + P+++ + + L + LY + G L +F D R Sbjct: 9 PVFDELQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAG 68 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + VYY +++ A +++V+ +V A+ E S+T V A W EREI+D++GL VG Sbjct: 69 GAGFYVYYLYAVDAAHG-FVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVG 127 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 P+ RR VL DDWPE + PLRKD P E + F +PVGP+H Sbjct: 128 HPNPRRCVLHDDWPE-VFPLRKDFDLQT--QLPPFSGERHKFREVAGEGVFQVPVGPVHA 184 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 EPGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+ Sbjct: 185 GVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHA 243 Query: 252 VAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVRE 311 A+ +++E A G+ P R +R++ LE+ER+ +H+ ++G C V F T M R++E Sbjct: 244 TAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKE 303 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 + + E L G+R G+ +GGVR D Q V + +LVE++ + Sbjct: 304 QVLRWNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGT 363 Query: 372 EQRTQGIGILDRQIARDL----------------RFDHPYADYGNIPKTLFTFTGGDVFS 415 R + G+L +ARDL R D P Y + T+ FT GDV Sbjct: 364 RDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQR 423 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGD 475 R++VR +E F SL ++ L MP + T ALG+VE RGE HW Sbjct: 424 RMVVRREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAP 483 Query: 476 NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 484 GNRLARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 168/575 (29%), Positives = 247/575 (42%), Gaps = 70/575 (12%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLY---YQHDGWLPVLFGNDE 68 +L L+ +F V EE + T+ +P+++++L Q L L DE Sbjct: 227 PLLEQLRERFGDDVRQEEGA--DMPTLVADPAQVPELLRFLKQDIDQPYERLEDLTAIDE 284 Query: 69 -----RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 R + VY+ LS E A ++ VKA + D E PS+T PAA W ERE D Sbjct: 285 TARSQRPAHDLTMVYHLLSFERA--GYLRVKAPLRNDRAEVPSITGLWPAANWYEREAFD 342 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYP----------- 172 M+G+ G PD RR+++P+ W HPLRK P T Sbjct: 343 MFGVRFAGHPDLRRILMPEGW--QGHPLRKSHPSRATDMPPFTRDTATTMVPPEGSHFFS 400 Query: 173 -FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 N ++ +GP H + L + GE+IVD D + Y HRG EK+AE R Sbjct: 401 NRAPVDNQSLSILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQH 459 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 +N+ +DR+ + G +++AY SVE G+EVP RA IR +L E+ R+ SHL+ LG Sbjct: 460 WNQYIPYTDRIDYLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLG 519 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 H VG T F REK + EL+ G R IGGV D+ Sbjct: 520 TFAHDVGAMTPVFYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFT 579 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPY 395 R+ A + E +L P RT+GIG + RQ +A DLR PY Sbjct: 580 RDFEARIDEFDRLLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPY 639 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----- 450 Y + T GGD F+R +VR+ E SL ++ A + MP +++ + Y Sbjct: 640 GGYDEFDFDVVTAGGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKR 699 Query: 451 ----------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P +E+ +GE ++++ +R R R + Sbjct: 700 EDGLQDIESLIHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPS 759 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + L + RG V+D I+GSLD + DR Sbjct: 760 FPHLQALPQLSRGRLVADVITILGSLDYVLADLDR 794 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 143/586 (24%), Positives = 239/586 (40%), Gaps = 75/586 (12%) Query: 10 GEAILAALKTQFPGAVLDE-ERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFG 65 +L L +FP AVL E ++ V+ L +V ++L+ L + Sbjct: 1 MHRVLETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICS 60 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D + V Y + I +K V + +VT A + ERE+ D+ Sbjct: 61 ADYPDDLERFEVIYHF-LSLPHNTRIRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLM 119 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM---------------------DYRLRPEP 164 G+ G PD RR++LP+D+ E+ HPLRKD ++ R P Sbjct: 120 GITFEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIP 178 Query: 165 TTDSETYPFINEGNSDARV----IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 + + S R + +GP H ++ L +DGE++ A + Y+HR Sbjct: 179 QDQRHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHR 238 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 G+EKLAE + Y +V +DR+ +C ++ AY +VE +G+ +P+RA +R+I+ EV Sbjct: 239 GVEKLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEV 297 Query: 281 ERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL 340 +R+ HL LG +G T F FR RE + E L G+R T IGGV D+ Sbjct: 298 QRIVGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLT 357 Query: 341 KEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ---------------- 384 + ++ V E +L RT+ + ++ + Sbjct: 358 PALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSG 417 Query: 385 IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 +A D+R PY Y + + GGD + R +RV+E S ++E LD +P+ P++ Sbjct: 418 VAYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIM 477 Query: 445 TEGFS---------------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQ 477 + P E P+GE + + + Sbjct: 478 ADMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSP 537 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + R+ ++ + +M RG +SD I G+ D DR Sbjct: 538 RPYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 158/529 (29%), Positives = 262/529 (49%), Gaps = 22/529 (4%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 AIL +K +L+ ++ + + + + +Y + L LF ND + Sbjct: 5 AILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCINVYKNIECVLVGLFANDTTPI 64 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + VYY ++ + + L + S + S+ VPAA EREI DMYG++ Sbjct: 65 DNKLTVYYTFAVRSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREIHDMYGIVFEE 124 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 LPD R LV ++P D+HPLR++ P + E F +PVGP+H Sbjct: 125 LPDSRELVHHGNFPLDVHPLRRNFKSNTHLPFQQRELE---FSTITGEGVFEVPVGPVHA 181 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 EPGHFR V GE I++ + +L+YVHRG+EKL E + Y +V S+R+ G F +S Sbjct: 182 GIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSERISGDETFTNS 240 Query: 252 VAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVR 310 +A+ ++E GI +P+RA R + E+ER+ HL ++ C + QF +R Sbjct: 241 LAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQFAMMR 300 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 + E L GSR N GG+RRD ++ L+ + ++ + E V ++ Sbjct: 301 RWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAIIKNNGM 360 Query: 371 MEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVF 414 R + GIL+ IA D+R + PYA Y + + + DV Sbjct: 361 FIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHSNCDVN 420 Query: 415 SRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 R+ V+++E +S+ +++ L+ MP + P+ + KP+++A G E+PRGE++H+ M Sbjct: 421 CRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTESPRGENLHFVMT 480 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G+N +FR++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 481 GENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 167/500 (33%), Positives = 276/500 (55%), Gaps = 24/500 (4%) Query: 40 VKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDA 99 V + V+ L + +L + G DER NGH++VY + G + + K +++A Sbjct: 34 VPAASFMETVKRLKAE-GAYLLTMTGVDERDYNGHFSVYSVFGLPG-DTTLVETKIVLNA 91 Query: 100 DSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 ++ F S++P +P+A W EREI+DM G++P G PD RR+ + DWP+D+ P+RKD + R Sbjct: 92 ENPTFTSISPVMPSAHWLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDFIAGR 151 Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 P + + F +PVGP+H EPGHFR F GE +++ +LFY H Sbjct: 152 QVPRVQGEMQ---FCKVEGEGLYQVPVGPVHAGIIEPGHFRFFTFGEDVINLQAQLFYTH 208 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+EK AE + + + +++RVCG+C +H+V+Y ++E+ GI P RA IR++LLE Sbjct: 209 RGIEKTAEGKH-FLDAVLVAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLE 267 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 +ERL++H+ ++G C +GF G + ++E+ M M L G R G + GGV+ D+ Sbjct: 268 MERLYNHVGDIGNMCAGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKIDL 327 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL---------- 389 + + + ++ ++ EL + +L++ ++ R Q G+L ARDL Sbjct: 328 KDTE--GIGRALDTVKRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARAS 385 Query: 390 ------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 R + PYA Y + + GDV+ R++ R++E+ S ++ +N+P L Sbjct: 386 GVNRDLRREFPYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGEL 445 Query: 444 LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 +P+ A+G+ E+ RG +VHW M G + ++R+ R+A++ NWPV+ L GN Sbjct: 446 QAPITYLQPYHTAVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLCLPGNI 505 Query: 504 VSDAPLIIGSLDPCYSCTDR 523 V D PLI S + CY+C DR Sbjct: 506 VPDFPLINKSFELCYACLDR 525 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 151/600 (25%), Positives = 246/600 (41%), Gaps = 84/600 (14%) Query: 2 NVNSSSNRGEAILAALKTQF-------PGAVLDEERQTPEQV-TITVKINLLPDVVQYLY 53 ++ +SN + +L LK +F PG + ++T + + T V N + +V+ YL Sbjct: 15 DMGGASNASD-VLEELKNRFGPPGTDNPGGPMGVVQKTGDDLPTQWVSRNRVHEVLHYLK 73 Query: 54 ---YQHDGWLPVLFGNDER--------TLNGHYAVYYALSMEGAEKCWIVVKALVDADSR 102 + L L DER + +Y+ LS E + +K + Sbjct: 74 LKAERPYRMLYDLTAIDERTRVHREDQPASRFTVIYHLLSFERNAD--VCLKVALTDTDL 131 Query: 103 EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP 162 P++T PAA W EREI DM+G++ G P RR++LP W H LRKD Sbjct: 132 RMPTITDIWPAANWYEREIWDMFGIVFDGHPHLRRILLPPWW--QGHALRKDHPARATEM 189 Query: 163 EP--------TTDSETYPFINE--------GNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 EP + ET F E +D + +GP H + L +DGE Sbjct: 190 EPFHLSTEKEEAEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDGE 249 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 +I+DA + + HRG EK+ E R ++ +DR+ + G +++ Y +VE GIEV Sbjct: 250 EIIDAVPEIGFHHRGAEKMGE-RQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEKLAGIEV 308 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P R +R ++ E R+ SHL+ G +G + F RE+ + E + G R Sbjct: 309 PDRVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRMH 368 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA 386 IGGV +D+ + M A + E ++ + ++ RT+G+G A Sbjct: 369 PSWYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDEA 428 Query: 387 ----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 D R PY+ Y + T GD + R VRV+E SL + Sbjct: 429 IEWGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRCAVRVQEIRQSLRI 488 Query: 431 LEFALDNMPDTPLLTEGF---------------------------SYKPHAFALGFVEAP 463 ++ L+NMP + P A +EA Sbjct: 489 IDQCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVGIEAT 548 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +G + ++ + N +R R R ++ + ++ + RG +SD I+GS+D + DR Sbjct: 549 KGNNGYYLISDGNTTAYRVRIRTPSFPHLQMIPLISRGLMISDLIAILGSIDFVMADVDR 608 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 163/538 (30%), Positives = 266/538 (49%), Gaps = 30/538 (5%) Query: 35 QVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVK 94 Q + V + + V+ L + L + D L + Y G + V Sbjct: 7 QGKVQVPPEGIREAVRRLVAEGYAHLTAITAVD---LQDSIELIYHFDGGGGYRH---VS 60 Query: 95 ALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 + + PS+ VP A + E+E+RD++G+ ++RR +LP+ +P D P Sbjct: 61 VKLPRANPTLPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPLLK 120 Query: 155 AMD-----YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 +D + PT + + ++ V+PVGP H EP +F L VDGE+IV Sbjct: 121 DVDPASVKALVAEAPTCQVDAVGLHAPLSPESVVVPVGPYHPAFKEPEYFSLVVDGERIV 180 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 A R+ +VHRG+EK AE+R + ++ FL +R+CGIC +H+ + +VE L +EVP+R Sbjct: 181 KAFVRIGFVHRGIEKAAESRSFFRDI-FLVERICGICSTSHAWCFVEAVERLLNMEVPRR 239 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 A +R+++ E+ER+HSH L LGL ++ GF+T FM + +RE M + E + G+R Sbjct: 240 AAYLRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSF 299 Query: 330 NLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR-- 387 IGGVRRD+ + + V R + L+E L + + RT+GIG AR Sbjct: 300 VTIGGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDARKY 359 Query: 388 --------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 D+R PY Y + + T GDV++ + VRVKE +S ++++ Sbjct: 360 CAVGPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQ 419 Query: 434 ALDNMPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 ++ MP + P A +EAPRGE ++ + +R + R T AN Sbjct: 420 LVEKMPSGNPVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLAN 479 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDR 549 + +L G T+SD P+++ S+DPC+SC DRVT++D+ ++ + G+ R Sbjct: 480 IQLAAKILEGQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKRREVSSKFFESLRGVRR 537 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 179/552 (32%), Positives = 265/552 (48%), Gaps = 48/552 (8%) Query: 15 AALKTQFPGAVLDEER------QTPEQVTITVKINLLPDVVQYLYYQHDGW--LPVLFGN 66 A+L+ F VL + T + + +K LP+V++ L+ + L GN Sbjct: 8 ASLRNYFEERVLKQPEGFSFGLWTKNEGLVWLKPACLPEVMEQLWLKVPSRPLLMTHVGN 67 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 DER+L + +Y L G + + + + FPS+T PA W ERE+RD+ G Sbjct: 68 DERSLGHGFVIYLLLHFPGDFTLTLGARGI----EKSFPSLTLLCPALNWPEREVRDLLG 123 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR----------PEPTTDSETYPFINE 176 L P G PD R LVL W +PLRK + E + + + F Sbjct: 124 LHPDGHPDPRPLVLHPGWTGGFYPLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEA 183 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 IPVGP+H EPGHFR GE ++ D +LFY H+G+EKL E + E Sbjct: 184 EGEGTFEIPVGPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGL 242 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + +RVCG+C +H++AY +VE G+EVP+ R++L E+ERL++H+ ++G C Sbjct: 243 KIVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAG 302 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 VGF G + + +E+ + L G R G GGV++ E+R + + E+ Sbjct: 303 VGFALGNVNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQ 362 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP----------------YADYGN 400 D E + ++ QR G+L +Q A DL P + Y Sbjct: 363 DFEEWLPLIQEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEE 422 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN------MPDTPLLTEG---FSYK 451 + GDV+SR+MVRV+E S A+L L+ + G FS + Sbjct: 423 LKMEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQ 482 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P++FA G E+PRG DV W ML D K++R R R+A+YANW + ++GN V D PLI Sbjct: 483 PYSFAWGCAESPRGTDVIWLMLDDEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLIN 542 Query: 512 GSLDPCYSCTDR 523 S + CYSC DR Sbjct: 543 KSFELCYSCCDR 554 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 151/581 (25%), Positives = 245/581 (42%), Gaps = 72/581 (12%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW--LPVLFGNDE 68 + I+ AL+ QF + + I +K L V+++L Q + L L G DE Sbjct: 38 DPIILALRNQFSPDAFTIQSTRTGMLVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDE 97 Query: 69 RTL-------NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREI 121 R + ++V+Y L + I++K + PS+ P A W ERE+ Sbjct: 98 RQRVYRHGLPDADFSVFYHL-ISIERNRDIMLKVALSEKDLNVPSLVSLFPNANWYEREV 156 Query: 122 RDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTT--------DSETYPF 173 DM+G+ G P+ RRL++P W HPL KD +P + E+ F Sbjct: 157 WDMFGITFTGHPNLRRLLMPVTW--QGHPLCKDYPARATEFDPFVLTKQKLDLEMESLTF 214 Query: 174 INEG--------NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 E + D + +GP H +S L +DGE+I+D + Y HRG EK+ Sbjct: 215 KPEEWGMARGNEHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKM 274 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 E R ++ +DR+ + G + + Y +VE GI+VP+R TIR +L E+ R++S Sbjct: 275 GE-RQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINS 333 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 HLL + VG T F R+K + E + G R IGGV D+ + + Sbjct: 334 HLLYISTFIQDVGAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQK 393 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDL 389 + + M + V+ L ++ R+ G+ + A D+ Sbjct: 394 LLQEFLDWMPKRLDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDI 453 Query: 390 RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF- 448 R PY+ Y N + GD + RVM++V+E SL +L+ L+NMP P + Sbjct: 454 RKWRPYSGYENFEFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPAGPFKADHPL 513 Query: 449 --------------------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRW 482 P A +EA +G + ++ N +R Sbjct: 514 TTPPPKERTLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRT 573 Query: 483 RCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R R ++A+ + ++RG+ VSD + +GS+D S DR Sbjct: 574 RVRTPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 139/567 (24%), Positives = 227/567 (40%), Gaps = 59/567 (10%) Query: 8 NRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ-HDGWLPVLFGN 66 N+ E + L +F + V I V P ++ +L +L + G Sbjct: 2 NKLENLKQLLAGKFKIENFKFTHAVGDDV-IEVPKEDAPALLLFLRESGQFDFLMDVCGA 60 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D + + V Y L + + VKA V + + P A W ERE DM+G Sbjct: 61 DYPSREKRFDVVYNL-FNSKDSSRLRVKAQV-GEGESIGTAIPAYRGADWFEREAYDMFG 118 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIP- 185 +I G P+ R+++ + HPLRKD + T+S F NE S V+ Sbjct: 119 IIFEGHPNLRKILTHHQFV--GHPLRKDYDAN--NQQACTNSLPIHFNNEPGSPGDVLND 174 Query: 186 ------VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 +GP H +DGE IV + + Y+HR EK+AET YN+V + Sbjct: 175 KYLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETH-PYNQVIPYT 233 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DR+ +++ Y +VE LG+E+P +A +R IL E+ R+ H + +G +G Sbjct: 234 DRLNYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGA 293 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 T F F +REK + E L G+R T + IGG+ +D + + L LV+E+R Sbjct: 294 LTSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTD 353 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPK 403 E+ M++ QRT+ + + A DLR PY Y + Sbjct: 354 EMANMVIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLRACGVNLDLRKAQPYYGYDALDF 413 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE----------------- 446 + T GD++ R +VR +E S+ ++E N+P Sbjct: 414 DVPVGTNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPGGDYTIRDKGIVLPEKKDVYGNIE 473 Query: 447 ----------GFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 P EA GE + + + +R + R +A + Sbjct: 474 GLMNHFMLIIKGLRPPVGEVYDATEAANGELGFYLVSDGSANPYRLKVRPPCFAIYQSFP 533 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++G ++DA + S++ DR Sbjct: 534 TVVKGAMLADAIATVASMNLIAGELDR 560 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 467 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 144/530 (27%), Positives = 234/530 (44%), Gaps = 36/530 (6%) Query: 27 DEERQTPEQVTIT-VKINLLPDVVQYLYYQHD-GWLPVLFGNDERTLNGHYAVYYALSME 84 E + ++ + + L +Q L + +L L G D V Y L Sbjct: 32 TETKPAENELQLHYLAPEDLHAEMQRLKDEEHFDFLETLTGMDWG--EDGLGVVYNLWST 89 Query: 85 GAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW 144 K + A D ++ P+V+ A ERE+ D +G+ +G PD RR+ L +DW Sbjct: 90 TQNKRISLKTATTDRENPFLPTVSDLWNIANIYEREVFDFFGIKFLGHPDMRRIFLREDW 149 Query: 145 ----------PEDMHPLRKDA---MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 PE+ +PLR D D + + S T D V+ +GP H Sbjct: 150 NGYPMRKDDKPEEENPLRMDNEPLADVTTQYDRPDGSITTKENTIFTEDDYVVNIGPQHP 209 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 ++ HFR+ ++GE+I D L Y+HRG+EKL E+ + Y + L++R+ + + Sbjct: 210 STHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNES-LTYPQTLALTERLDYLGAMQNR 268 Query: 252 VAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVRE 311 A +E A GIEV +R IR+I+ E +R+ SH+L C +G + F+ FR RE Sbjct: 269 HALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGATSAFLYGFRDRE 328 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 + + + E G R N IGGV DI + + + MR ++ E ++ + Sbjct: 329 QILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYDIFVNNVIA 388 Query: 372 EQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFS 415 R +G+G+L+++ + DLR PYA Y + T+T GD F+ Sbjct: 389 HNRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDFQEITYTEGDSFA 448 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDTPL--LTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 R+MVR+KE +SL ++E +D +P+ P T+ P VE RGE Sbjct: 449 RLMVRMKEIEESLKIIEQLIDGIPEGPFQTKTKPIIKIPAGTYYSAVEGSRGEFGVLLES 508 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ R R+ + + R N ++D I G++D DR Sbjct: 509 KGDKFPSRLHYRSTGLPLVAAMDTICRDNFIADLMAIGGTVDYVVPDIDR 558 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 143/570 (25%), Positives = 229/570 (40%), Gaps = 66/570 (11%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ---HDGWLPVLFGNDER 69 + AL+ +F + + ++ L ++YL L L DER Sbjct: 3 LAEALQKEFSATPFTAACD--DCLDFSLPTANLKPCLRYLRDDWRSPYRCLWDLTAMDER 60 Query: 70 TLNGHYA-VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 G + +Y+ + E + ++ + A PS+T A W ERE+ D++GL Sbjct: 61 PSGGGFTLIYHLFNYAVGE--LLRLRVPLPAGQETAPSLTDLYANANWYEREVYDLFGLR 118 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETY------------PFINE 176 G PD RR++LP W HPLRK+ P + Sbjct: 119 FAGHPDLRRILLPPQW--RGHPLRKEEAIRATERPPIVIDREHLQERLGEYQRSPDGQAL 176 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + + V+ VGP H + + L + GE+IV D + Y HRG+EK+AE Y+ Sbjct: 177 DDGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGH-SYHNFI 235 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +DRV + G Y ++E I VP+RA IR++L E+ R+ SHL+ LG + Sbjct: 236 PYTDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSYGND 295 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G FR R + + E G R IGGV D+ + R L L+R + Sbjct: 296 LGTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEK 355 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 + + + + P RT+G+G++ + A DLR PY Y Sbjct: 356 GLPDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDR 415 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY---------- 450 + + T GD +SR + + E +S+ +L D +P+ P L Sbjct: 416 VDFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTLACDAPLALMPKSRTLL 475 Query: 451 -----------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 P ALG E+ RG ++ + K +R R R ++A+ Sbjct: 476 DIETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFVVSDGGPKPYRLRVRTGSFAHVQ 535 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ + RG + D IGSLD + DR Sbjct: 536 MITELGRGLRLPDFIATIGSLDYVLADLDR 565 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 145/574 (25%), Positives = 247/574 (43%), Gaps = 68/574 (11%) Query: 7 SNRGEAILAALKTQFPGA-VLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF- 64 +N + ++ + P ++ E + VK L D + +L + +LF Sbjct: 3 NNDRQLLIERFDAKAPNHEIIGCE-------SFEVKKEHLIDTLHFLKNEASSRFEMLFD 55 Query: 65 --GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 DE G +V+Y L + K +I ++ + D+ E P+V P A W ERE+ Sbjct: 56 LSAIDECERGGGLSVFYYL-LSVKNKQFISIRTHIANDTIEVPTVVGLWPNANWYEREVY 114 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS--- 179 DM+G+ PD RR++ D W HPLRK + D E F + S Sbjct: 115 DMFGIKFTDHPDLRRILTFDFW--KGHPLRKSYPCRATLMDEPFDLEGPDFDDVMKSYDI 172 Query: 180 ------DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + V+ +GP H +D ++ + GE I D D + + HRG EK+AE R ++ Sbjct: 173 QGKQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAE-RHTFH 231 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 +DR+ + G A + Y +E GIEVP+RA T+R +L E+ R+ SHL+ G Sbjct: 232 NYIPYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSI 291 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 H +G F REK + EL+ G R IGGV +D+ + + + Sbjct: 292 THNLGGMAPAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQG 351 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 + V +L +++ + + RTQ I + + +A D+R D PY Sbjct: 352 IEQLVPDLEKLMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMG 411 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-----GFSYK- 451 Y + + GD ++R ++RV+E +SL ++ A MP+ P+L + GF K Sbjct: 412 YEDYDFDVPVGQDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPILADNAPSFGFPRKQ 471 Query: 452 ----------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 P A E +G + ++ +R R R ++ Sbjct: 472 NALRDIETLIHSFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSF 531 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ ++ + +G+ +S+ +IGS+D + DR Sbjct: 532 THFQSVKAVSKGDLLSNIICLIGSIDYVLADIDR 565 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 147/529 (27%), Positives = 230/529 (43%), Gaps = 48/529 (9%) Query: 39 TVKINLLPDVVQYLYYQ-HDGWLPVLFGNDERTLN---------GHYAVYYALSMEGAEK 88 ++ L D + L + +L L G D + G VY+ S E+ Sbjct: 6 YIEPAALHDEMLRLRNEKQMDFLESLTGMDWGVADEGDAPNVTRGLGVVYHLESTVTGER 65 Query: 89 CWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDM 148 I + ++ E PSV+ AA + ERE+ D YG++ +G PD RRL L +DW Sbjct: 66 IAIKTSTN-NRETPEIPSVSDIWKAADFNEREVFDYYGIVFIGHPDMRRLYLRNDWV--G 122 Query: 149 HPLRKDAMDYRLRPEPTTDSETYPFINE----------------GNSDARVIPVGPLHIT 192 HP+RKD + P + ETY E + V+ +GP H Sbjct: 123 HPMRKDNNPEKDNPLRMDNEETYDTTREIELNPDGTYQTQENVIFDDREYVVNIGPQHPA 182 Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + FR+ ++GE I D Y+HRG+EK+ E+ + Y + L+DR+ + + Sbjct: 183 THGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES-LTYPQTLALTDRLDYLGAHQNRH 241 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREK 312 A +E A+GIEV +R IR+I+ E++R+ SHLL +G T F FR RE Sbjct: 242 ALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGALTAFFYGFRDREM 301 Query: 313 SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNME 372 + M E G R N IGGV+ D+ + K + +R + E ++ Sbjct: 302 ILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHDVFTGNVIAR 361 Query: 373 QRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 QR +G+G+L R+ A D+R PY Y + +T GD F+R Sbjct: 362 QRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFKEIVYTEGDSFAR 421 Query: 417 VMVRVKETFDSLAMLEFALDNMPDTPL--LTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 MVR+ E +SL ++E +DN+P+ P+ + P VE RGE + Sbjct: 422 YMVRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIRVPEGSYYTAVEGSRGEFGVFLESH 481 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ +R R+ + + RG ++D I G+LD DR Sbjct: 482 GDKTPYRLHYRSTGLPLVSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 151/530 (28%), Positives = 256/530 (48%), Gaps = 27/530 (5%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLN 72 ++ L + D T ++ I L V QYL+ D L + D+ Sbjct: 1 MVEELLKPIKDLITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRF 60 Query: 73 GH---YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + + Y S +IV + F S+ +PA W EREIRDM+GL+P Sbjct: 61 SDDRCFTIRYVYSYHKKNVFFIV----ENKVKERFNSLANIIPALNWYEREIRDMFGLVP 116 Query: 130 VGLPDQRRLVL-PDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGP 188 + PD R LVL P+++P D+HPLRKD D + RPE + + Y + I VGP Sbjct: 117 LNHPDPRPLVLFPENFPSDLHPLRKDF-DIKTRPEFKSYGK-YEYKEVEGEGVFNILVGP 174 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 +H EPGHFR + GE I+ + R F+ HRG+EKLAE + EV + +V G + Sbjct: 175 IHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTA-EEVLEIVPKVSGDHSY 233 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 AH++AY ++E E+P+RA IR + E+ERL +L ++ V + G F Sbjct: 234 AHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMFI 293 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 ++E+ M + + L G+R + IGGV D+ +E+ + + + +++ + Sbjct: 294 LKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFDS 353 Query: 369 PNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGD 412 ++ R + G + + + D+R +HPY Y + T TF GD Sbjct: 354 ASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGD 413 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 F+R+ R+ + DS+++++ L ++PD + T+ + + LG+ E RG +++ Sbjct: 414 CFARLKCRLSDIEDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFVK 473 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 K+ R + R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 474 TDKEGKIDRLKIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 155/534 (29%), Positives = 249/534 (46%), Gaps = 27/534 (5%) Query: 37 TITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKAL 96 + ++ + + D V L + L G D Y+ M+ + I ++ Sbjct: 3 IVEIRPDAISDNVTEL-LKRGARLIYASGVDMGVRGIKVNYYFCFDMKEPSEHTI-LRTY 60 Query: 97 VDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 +D ++ S+TP A W ERE+ + G+ G P+ L LP +W +DM+ + Sbjct: 61 LDRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTHLWLPLNW-DDMYLNGRPEA 119 Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 D+ T P N IP GP H E ++ V+ E + D +L Sbjct: 120 DHETERINAAPPATTPRDNIVTLPVTAIPYGPYHPAFIESNFLKMSVEDEVVKKVDLKLG 179 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 + HR + KL E R Y ++ FL++R+CG C H++++ SVE+ I++P +A R++ Sbjct: 180 FNHRSVIKLMERRDYYKDI-FLAERICGFCNSHHALSFARSVEDIASIDIPPKAKLARTL 238 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 L E+ER+ SHLL +GL GF T M RVRE+ E++ G R T+GL IGG+R Sbjct: 239 LCEMERIQSHLLAVGLIGDLTGFRTMLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIR 298 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------IA 386 RDI Q L +R M+ V E + L+ + R + +G+L + A Sbjct: 299 RDITPAQADFILNKLRIMKKSVPEFFDQALSNDVLVGRLENVGVLSLENSVKLGAVGPTA 358 Query: 387 R------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 R D+R + PY Y ++ + T GGD +R+ V+++E S+ + E + + Sbjct: 359 RGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKMREVLMSMHIAEQCCEKIKT 418 Query: 441 TPL-LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML 499 P L + P A+ E PRGE ++ R R T+ ++ ++ Sbjct: 419 APAGLATKVNELPCGEAISKSEPPRGELLYHVASNGTNTPDFVRIRVPTFLTAHIMLRLI 478 Query: 500 RGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRSP 553 +G V D P IIGS+DPC+SCTDRV ++ K K+V R +D R+P Sbjct: 479 QGGWVGDVPAIIGSIDPCFSCTDRVAII---KNNEKSVVDM---RTLVDHKRTP 526 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 134/578 (23%), Positives = 232/578 (40%), Gaps = 78/578 (13%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL---PVLFGNDERT 70 L+ +F + + +++ V + + + +L + L D Sbjct: 9 AKKLEERFG---YPKVSEGKGVLSVEVPKDKFIEFLTFLKEDPEYQFKMFIDLTIIDHGE 65 Query: 71 L-NGHYA-VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 N + V S + E+ I+VK A++ P++T A W ERE DM+G+ Sbjct: 66 KENPRFQGVVILFSPKNQER--IIVKTW--AENETLPTLTNLWKGAKWAEREAWDMFGIK 121 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAM------------DYRLRPEPTTDSETYPFIN- 175 G + R++L + +P HPLRKD + LR E Y ++ Sbjct: 122 FEGHENLVRMLLWETYP--YHPLRKDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHT 179 Query: 176 ----------------EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 + V+ GPLH + F +DGE + D + +H Sbjct: 180 ALPTMEDLEITQKKRMPVKTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLH 239 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+EKL E + + + +DR+ I + AY + E LGIEVP++A IR+++ E Sbjct: 240 RGVEKLGEN-VNWQQFIPYTDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAE 298 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 + R++SHLL LG +G T F+ FR REK M + E + G+R T IGGV D+ Sbjct: 299 LSRINSHLLWLGTYALDLGALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADL 358 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ--------------- 384 L++++ +++ +L R + + ++ + Sbjct: 359 PYGALDAIEHLIKDLPQRINDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGS 418 Query: 385 -IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM----- 438 + D+R Y YG + + GD + R +VR++E S+ ++E + + Sbjct: 419 GVPYDVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSK 478 Query: 439 --------PDTPLLTEGFSYK----PHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCR 485 PD L + P + PRGE + + K R R R Sbjct: 479 DDPYFFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIR 538 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + N V + G ++DA ++ ++DP TDR Sbjct: 539 SGAFYNLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 216/483 (44%), Gaps = 23/483 (4%) Query: 56 HDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAV 115 +G + V L G +++++ ++ PS TP P A Sbjct: 51 QGCRWAGGWGE---ARGESWVVNALLEKSGD---YLLLRTVLPPGRTGLPSHTPHFPGAA 104 Query: 116 WGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFIN 175 ER RD+ GL +G PD RR V W E PLR D P T +Y F + Sbjct: 105 RPERHTRDLLGLKFIGHPDDRRWVRHQAWGEREFPLRPDFPLAGQPPAVTAPDRSYGFAS 164 Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + IPVGP+H EPGHFR GE +++ + RL YVH+G+EKLA R + Sbjct: 165 AHGPEVNEIPVGPVHAGIIEPGHFRFLALGETVLNLEERLGYVHKGIEKLAVGRDP-EGL 223 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L+ RV G H+ A ++E+A G+ P+RA +R+I +E ER+ +HL ++G C+ Sbjct: 224 ARLAGRVSGDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICN 283 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 F G QF R+RE + G R + GGV D+ E + +R Sbjct: 284 DTAFAFGHSQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALR 343 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYG 399 +++ EL +L + + R G G+L +I RD+R P+A Y Sbjct: 344 SELEELKPILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYD 403 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + T GDV +R+ VR +E SL +L+ L + PL + + +A LG Sbjct: 404 RLGVKAVTRGDGDVAARLYVRYEELLASLDILDQCLRRIEPGPLRADWRTPPANAEGLGL 463 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 VE RGE + + R+ R + NWP L ++ GN V D PL S++ YS Sbjct: 464 VEGWRGEIATYVRFDGAGSIVRFFPRDPSVFNWPALEKLILGNIVPDFPLCNKSVNGSYS 523 Query: 520 CTD 522 D Sbjct: 524 GHD 526 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 242/494 (48%), Gaps = 33/494 (6%) Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D+ YY C +++ +D ++ SVT P A W ERE+ + Sbjct: 4 TGVDKGVAGIRVD-YYFGFDHLEPGCHTILRTFLDRENPVLKSVTTLTPQADWSEREMIE 62 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 G+ PD R L LP +W + + +P + + + Sbjct: 63 FLGVRAEEHPDPRHLWLPLNWE------QMHTDEAAPEKKPQSIQAS---DHITTMPVST 113 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP H E +F++ V+ E + AD +L + HR + KL E R Y ++ +L++RVC Sbjct: 114 IPYGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDI-YLAERVC 172 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 G+C H++++ +VEN + VP+RA IR+++ E+ER+ SHL+ +G+ VG+ T Sbjct: 173 GLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTML 232 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 MQF R+RE EL+ G R T+GL +GGVRRDI Q + + ++ V L + Sbjct: 233 MQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLYD 292 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 +L+ + R + +G+L + A D+R + PYA Y N+ + T Sbjct: 293 EMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIVT 352 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL-LTEGFSYKPHAFALGFVEAPRGE 466 G D +RV V+++E S++++E L+ + P + P A ALG E PRGE Sbjct: 353 DNGCDSLARVEVKMREALVSISIVEQCLEKLSTVPPEIITKLEELPCAEALGKTEPPRGE 412 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 ++ R R T+ ++ +L G+ V+D P I+GS+DPCYSCTDRVT+ Sbjct: 413 LLYHVASNGTNTPEFVRIRVPTFMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVTV 472 Query: 527 -----VDVRKRQSK 535 + VR R+ K Sbjct: 473 HKDAKIVVRSREEK 486 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 152/481 (31%), Positives = 229/481 (47%), Gaps = 27/481 (5%) Query: 59 WLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGE 118 L LF Y + Y S G+ ++ + ++ S+ P+A W E Sbjct: 55 VLSALFATPVY-AGEGYILRYVFSHAGS-----ILVLSRALNRKQATSIATIFPSATWPE 108 Query: 119 REIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDS-ETYPFINEG 177 RE RDMYG+ G D RRLVL + P +PL K + + + T E YPF Sbjct: 109 RECRDMYGIKFEGAFDTRRLVLHETCPAGFYPLEKSVKNAPVATKKTVPPAEEYPFRTVS 168 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +PVGP+H EPGHFR V GE + + + RLFY HRG+EKLAE + Sbjct: 169 GDGVYQVPVGPVHAGIIEPGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPA-ACVR 227 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +++ V G A++ ++E GI VP RA IR++L E ER+ SHL +L V Sbjct: 228 VAEAVSGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDV 287 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 F G F +RE+ E L GSR G+ L GG+ RDI E + + + + Sbjct: 288 AFALGASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKE 347 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNI 401 + ++L+TP++ R GI+ + + RD+R D PY Y Sbjct: 348 FRAGLAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRF 407 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVE 461 GDV +R V+ E DSL+++E + MP+ P+++ AL VE Sbjct: 408 IPVPHPLNDGDVLARFTVKAAEVLDSLSLIEKVIAGMPEGPVISADG--VGDGAALALVE 465 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 PRGE++ W + + ++FR++ R A+Y NW + + GN ++D P+I SL+ Y+ T Sbjct: 466 GPRGENLCWVEIRE-GRVFRYKVRTASYCNWLAIEHAAPGNIIADFPVINKSLNLSYAGT 524 Query: 522 D 522 D Sbjct: 525 D 525 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 437 bits (1124), Expect = e-121, Method: Composition-based stats. Identities = 128/543 (23%), Positives = 218/543 (40%), Gaps = 40/543 (7%) Query: 15 AALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDERTLNG 73 AAL+ VL+ E ++ + + DV+ L + L + + Sbjct: 26 AALEALIEDHVLEREDH-LNAPGFVIRADAVQDVLSTLKTEAGFDHLSCVTAEEH---ED 81 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + Y L + + D+ + P A W ERE D+ G+ P Sbjct: 82 RFESIYHLRKYDDPTQEVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHP 141 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG---NSDARVIPVGPLH 190 + R++LPD W HPL D + + + + +E +SD + +GP H Sbjct: 142 NLERILLPDTW--QGHPLGLDYNQNKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHH 199 Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC-GICGFA 249 + H +DGEQ+ D + + Y+HR E++A+ +++ DR G G Sbjct: 200 PATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGIL 259 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV--GFDTGFMQFF 307 + AY + E+ I+VP+ A +R++ E+ R+ H+L LG C + F FM Sbjct: 260 NEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAM 319 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK---EQRLQTLKLVREMRADVSELVEM 364 R RE + E L G R +GGV DI + E + E+ + E ++ Sbjct: 320 RDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDL 379 Query: 365 LLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTF 408 + + + RT G+LD + A D+R D PY Y + + T Sbjct: 380 ITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTE 439 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------LLTEGFSYKPHAFALGFV 460 GGD +SR++VR++E S ++E +D + P + + V Sbjct: 440 DGGDNYSRLLVRMEEVEQSARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTV 499 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E +GE + +K R++ R+ ++N L+ M G + D +GSLD Sbjct: 500 EGAKGELGVYIRADGTEKPGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGE 559 Query: 521 TDR 523 DR Sbjct: 560 VDR 562 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 117/570 (20%), Positives = 223/570 (39%), Gaps = 68/570 (11%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW-LPVLFGND--ER 69 +L ++F VL T +++ + N + + V ++ L + D Sbjct: 1 MLEKFSSKF--NVLK-HSTTNGLLSVQINPNDIYEAVLFVRDNIGFEILADIVCVDNLYI 57 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 +++YY +E I + + ++ SV +A WGERE D +G+ Sbjct: 58 DKEKRFSLYYIFRKISSENLCIYIDIDI---NQSVKSVESIYKSANWGERECFDQFGVKF 114 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR---------PEPTTDSETYPFINEGNSD 180 P+ +R++ D+ +PLRKD + + E + + +E N + Sbjct: 115 ENHPNLKRILNHKDF--QGYPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDE 172 Query: 181 ARV----IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + + +GP H + + +DGE+I+ + Y+HRG EK E Y ++ Sbjct: 173 FKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENH-SYAQII 231 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +DR+ ++V Y +VE ALG+ +P R +R IL E+ R+ H + LG Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G T + + RE+ L G+R T IGG+ D + + L ++++ Sbjct: 292 MGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEK 351 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGN 400 V + + ++ R Q I ++ A DLR D PY Y + Sbjct: 352 GVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDS 411 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS----------- 449 ++ + GD++ R+ VR E +S++++ A+ +P+ + + Sbjct: 412 FDFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYS 471 Query: 450 ----------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 P+ E GE + +R + R + Sbjct: 472 NIESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALN 531 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 M++G+ ++D+ L +GSL+ DR Sbjct: 532 AFSSMVQGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 221/486 (45%), Gaps = 20/486 (4%) Query: 54 YQHDGWLPVLFGNDERTLN-GHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVP 112 + L L+G + + +A+Y ++ E +++ + A++ E PS++ Sbjct: 49 RRLGMRLVALWGAEAGCHDRDAHAMYAYMAFAHPEHRHTLLRTPLAAENPELPSISGHYI 108 Query: 113 AAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYP 172 AA ER ++DM+G+ +PD R + + WP + +PLR D Y Sbjct: 109 AACRMERHMQDMFGIHITDIPDPRPWIKHEHWPREAYPLRVDFDARPPLLAEAHG--DYD 166 Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 ++ G+ IPVGP+H EPGHFR GE I++ + RL YVH+G+E+ +++ Sbjct: 167 YVRSGSEGVYEIPVGPVHAGIIEPGHFRFLAVGEHILNMEERLGYVHKGIERAMQSKSA- 225 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 E ++ R+ G AH+ A+ + E A I+VP+RA IR+IL E ER+ +H+ ++G Sbjct: 226 EEGLKVASRISGDSTVAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHIGDIGA 285 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 C+ F Q R+RE + L G R + GGV D+ + + Sbjct: 286 VCNDAAFAFMLHQMHRLREDMARLHLELFGHRLLMNTLIPGGVLVDLGERAIGLLREQTL 345 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYA 396 + +V L + P+++ R G G++ + A+D+ R + YA Sbjct: 346 AIANEVEHLRAIYADHPSIQGRVIGSGMVPVEDAQDIGLLGYVGRASGHYPDERIEEAYA 405 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFA 456 Y + + GDV +RV VR +E +S ++ L+ MP+ P++ +P Sbjct: 406 PYDELEVNVPQGKLGDVATRVWVRFEEIAESSRLISELLEKMPEGPIVANWLPPEPGVSG 465 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 +E RGE W G+ ++ R R + NW L +R V D PL S + Sbjct: 466 FAAIEGWRGEIAAWVRFGEGGQIDRCFVRDPSVINWLGLELAVREVPVPDFPLNNKSFNC 525 Query: 517 CYSCTD 522 YS D Sbjct: 526 SYSGND 531 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 216/479 (45%), Gaps = 37/479 (7%) Query: 60 LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGER 119 L L+G + VY AL G K + + +FPSV P+A ER Sbjct: 77 LFGLWGAPQ-------TVYLALLDRGGSKISLF---GLQVPEGKFPSVAVAYPSAARLER 126 Query: 120 EIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS 179 + D++GL G D R + W +R D P + + Y F Sbjct: 127 ALYDLFGLQAQGSLDSRPWLDHGKWG-----VRFPMGDSY----PDGEEKLYSFFPARGE 177 Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 +PVGP+H EPGHFR + GE +V + RL Y H+G+E L ++ ++ Sbjct: 178 SLHQVPVGPVHAGIIEPGHFRFTMSGEIVVRMEERLGYTHKGIESLFSG-ASIDKGMEIA 236 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 R+ G A++ Y +VE ALGI P RA IR+++ E+ER+ +H ++G C+ F Sbjct: 237 GRISGDSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAF 296 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + +REK + A+ G R ++GGV+ D+ E + +L+ ++ +V Sbjct: 297 PRILSRCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVV 356 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 L + + +++ RT G G+LDR++A D R Y Y ++ Sbjct: 357 CLKDFYDSKNSLQDRTVGTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSF 416 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 + GDV +RV +R+ E S+ +LE L+ MP + E + L VE+ Sbjct: 417 EVPVLEDGDVNARVWIRILEIEQSVKLLEQILEGMPPGSICAERIGGEGSGKGLSVVESF 476 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RG+ + W + N K+ R R ++ WP+L ++ G ++D PL S + YS D Sbjct: 477 RGDILTWIEI-YNGKIIRCHPRDPSWFQWPLLEKVIVGGVIADFPLCNKSFNCSYSGHD 534 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 146/493 (29%), Positives = 227/493 (46%), Gaps = 26/493 (5%) Query: 48 VVQYLYYQHDGW-LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPS 106 Y DG+ L LFG + ++ Y ++++ S Sbjct: 41 AALYPKLAEDGFGLIGLFGVEGFRGYQGLSLLYIFEKRNYSGTLVIIR----RADSPVSS 96 Query: 107 VTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTT 166 + P+A + EREIRD YG D+RRL L + +P + HPL + L Sbjct: 97 IAAIFPSACYFEREIRDGYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAGV 156 Query: 167 DSET-YPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 ++E YPF + VGP+H EPGHFR GE I++ + RLFY HRG+EKL Sbjct: 157 ENEALYPFKKISGEGVYEVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKL 216 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 A + + +++ + G A++ AY+++VE+ P+RA +R ILLE+ERL+S Sbjct: 217 AMGK-DIDFGLKIAEGISGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYS 275 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 HL +L VG+ G +RE+ M + L GSR G+ GG+ +DI E Sbjct: 276 HLADLSGMLTDVGYPVGAASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELIT 335 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDL 389 + + SE VE LA ++ R + GI++ ++ A D Sbjct: 336 ELADYLYAFEGRFSEQVEKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDT 395 Query: 390 RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS 449 R + PY Y + L GDV +R VR+ E SL ++ + Sbjct: 396 RLNQPYGFYPELSFKLPVLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAIPLKP 455 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 + ++L VE+PRG+ +HW L D K+ R++ R A+Y NW + + + G+ + D PL Sbjct: 456 V--NGYSLVLVESPRGQSLHWLWLRD-GKIERYKVRTASYCNWQAIEHAVLGDIIPDFPL 512 Query: 510 IIGSLDPCYSCTD 522 I SL+ Y+ TD Sbjct: 513 INKSLNLSYAGTD 525 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 141/386 (36%), Positives = 204/386 (52%), Gaps = 19/386 (4%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 IP+GP H EP +F + V GE+IV RL Y HRG+EK E R Y + +L +R+ Sbjct: 5 TIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYLLERI 63 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC HS AY +VE G+ +P RA+ IRS++ E+ER+HSHLL LG++ H +GFDT Sbjct: 64 CGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTL 123 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 M +R RE M + L G+R YG+N +GGVRRDI EQ V + + Sbjct: 124 LMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERTKYYI 183 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 E+ P + R G+G L + A RD+R D PYA YG++ + Sbjct: 184 EVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLDFRVI 243 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T DV+ R +VRV E +S M+ L+ +P+ + + P A EAPRGE Sbjct: 244 TDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEAPRGE 303 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC DR Sbjct: 304 CFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCADRCLE 363 Query: 527 VDVRKRQSKTVPYKEIERYGIDRNRS 552 + RQ + + E+ R G++ R Sbjct: 364 LLGEGRQ--LMEWSELRRRGVEWYRR 387 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 103/364 (28%), Positives = 172/364 (47%), Gaps = 19/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +S+ V+ +GP H ++ L +DGE+++ + + Y+HRG+EK+AE R Y + Sbjct: 19 DSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRT-YVQFNP 77 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 DR+ + ++ + Y +VE + ++ P RA +R IL E+ RL SH++ LG + Sbjct: 78 YVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDI 137 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G T FR RE+ + + E G+R T IGG + + L ++ Sbjct: 138 GALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPR 197 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNI 401 + E +L QRT+GIGIL+ + DLR PYA Y + Sbjct: 198 IDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAAYDQV 257 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFALGF 459 + T GD F R MVR++E S+ +L A++ +P P + + P Sbjct: 258 DFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPKVLKPPVGRIYHS 317 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +EAP+GE ++ + + + +R R R ++ N L M+RG ++D +IG+LD Sbjct: 318 IEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIADVVAVIGTLDIVLG 377 Query: 520 CTDR 523 DR Sbjct: 378 EVDR 381 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 147/483 (30%), Positives = 207/483 (42%), Gaps = 34/483 (7%) Query: 56 HDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAV 115 G L+G D VY AL+ V+++ V +S FPS+T P A Sbjct: 34 RGGRFVSLWGTDHPEGF----VYAALA---GPDGLFVLRSPVSKESGTFPSLTALFPLAS 86 Query: 116 WGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFIN 175 ER +RD+YG IP GL D R + DD + YPF+ Sbjct: 87 RPERAVRDVYGWIPEGLSDTRPWIRQDD----------HGGHGSGKERSPEGGRDYPFVR 136 Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 IPVGP+H EPGHFR V GE+++ + RL Y H+G+ L R +V Sbjct: 137 VDGEGVHEIPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHR-PVGDV 195 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 T LS R+ G A A+ +VE A P+RA +R+ILLE ER+ +HL +LG + Sbjct: 196 TRLSSRISGDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGN 255 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 GF G +QF R++E + + G R GGV D + + ++ Sbjct: 256 DAGFAFGLVQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQ 315 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 ++ L + ++ R G G+LD +A DLR DHP Y Sbjct: 316 EEIHVLKTIYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPYD 375 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + GDV +RV VR +E SLA LE L + P P P A G+ Sbjct: 376 IERVPVALAKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGFGW 435 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +E RGE + W L + + ++ WP L + GN V+D PLI S + YS Sbjct: 436 IEGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLSYS 495 Query: 520 CTD 522 D Sbjct: 496 GHD 498 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 171/364 (46%), Gaps = 20/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 ++ ++ VGP H ++ + +DGE I +A + Y+HRG EKLAE + Y ++ Sbjct: 19 RTEEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAEN-LTYTQIIP 77 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ + ++ ++VE +G+E+P+RA +R I +E+ R+ SHL+ G + Sbjct: 78 YTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLDI 137 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G F+ FR RE + + L G+R T+ +GGV+ D + + V+ M+ + Sbjct: 138 GAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKE 197 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 ++ +++ R GIG D + A DLR D PY Y Sbjct: 198 LNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRF 257 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFS--YKPHAFALG 458 + T T GD +R +R+ E SL +LE AL+ P + ++ + P Sbjct: 258 EFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRVIRPPAGETYV 317 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 +E+PRGE + K +R + R ++ N +L +L+G +S+ I+GS+D Sbjct: 318 RIESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMVAILGSIDIVL 377 Query: 519 SCTD 522 D Sbjct: 378 GEVD 381 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 132/499 (26%), Positives = 212/499 (42%), Gaps = 33/499 (6%) Query: 41 KINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDAD 100 + ++V ++ G L LFG G V L+ + + ++ + DA Sbjct: 38 EPARFNEIVLA-AHRGGGRLAALFG--RPDAGGGVLVTAVLADDPEGRLALLATRVADA- 93 Query: 101 SREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 FPS+ +PAA ERE+ + +GL P G P + L P R+ A D Sbjct: 94 ---FPSIAAELPAAQAFERELAEQWGLRPEGHPWLKPL--------RFEPPRRAAPDPFG 142 Query: 161 RPEP-TTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 R +P T YPF + + VGP+H EPGHFR GE++ + L Y H Sbjct: 143 RQDPRATIPGEYPFFRVEGEEVHEVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQH 202 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+E+L + L++ + G H +AY +VE+ G+ RA ++R I LE Sbjct: 203 RGVERLLRGGPDRRSMA-LAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLE 261 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 +ER+ +H+ +LG VGF +R + + + G+R L GGV+ D+ Sbjct: 262 LERIANHVGDLGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDL 321 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------- 386 E VR ++ +P++ R +G G + +A Sbjct: 322 DAEAARALAARVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARAS 381 Query: 387 ---RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 RD+R DH + Y + T GDV +R ++R+ E S+ + L+ +P P Sbjct: 382 GVDRDVRRDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPS 441 Query: 444 LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 T P A + VE RGE H ++ +L ++ + ++ NW L LR Sbjct: 442 RTAPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQ 501 Query: 504 VSDAPLIIGSLDPCYSCTD 522 +SD PL S + Y+ D Sbjct: 502 ISDFPLCNKSFNLSYAGHD 520 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 115/447 (25%), Positives = 182/447 (40%), Gaps = 32/447 (7%) Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 V+ + F S+TP P EREI + + ++P G P + + Sbjct: 71 VEVVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVLPQGHPWLKSV-------------- 116 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 + + T F + +A + VGP+H EPGHFR GE + + Sbjct: 117 RSHPPVVAAHGKAAHAGTTDFFSIDGEEAHEVAVGPVHAGIIEPGHFRFQCHGETVYHLE 176 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 L Y HRG+E + + + + + G H A +E GI+VP R Sbjct: 177 ISLGYQHRGVEPALKDGPDKRTLHYF-ETLAGDTSIGHGTAGCCMIEALAGIDVPPRGQA 235 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR+I E+ER+ +H+ +LG VGF R+R ++ + ++ G+R GL + Sbjct: 236 IRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLVIP 295 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GG DI Q + L+ + E+ AD +E++L TP++ R + G + Q AR Sbjct: 296 GGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNTPSVLARLENTGQVPTQTAREIGLV 355 Query: 388 -----------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D+R HPY +Y P + T GD +R +R E S + L Sbjct: 356 GLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTLLA 415 Query: 437 NMPDTPLLTE-GFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 ++P + P A VE RGE H + K ++ ++ NW + Sbjct: 416 DLPGGEVANLWEGKLPPQKMATILVEGWRGEICHTAATDSAGKFSFYKIVDPSFHNWFGV 475 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTD 522 LR +SD PL S + Y D Sbjct: 476 SLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 228/506 (45%), Gaps = 39/506 (7%) Query: 39 TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVD 98 TV L + V L L ++ +D+ V Y L + G + + Sbjct: 9 TVSDAELAESVAEL-LAEGYRLALVAAHDD---GDALRVVYLL-VAGQPDRRVELTLRTG 63 Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 A + PS+ A ERE+ D+YG+ PVG P RRLV WP+D HP+R+DA D Sbjct: 64 AANPSVPSLAELSIPAGRFEREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDAGD- 122 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 P P +PF+ IPVGP+H EPGHFR V GE I+ RL++V Sbjct: 123 ---PPPFDAVGRFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWFV 179 Query: 219 HRGMEKLAETRMGY--NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 HRG+EKL E R E L++R+ G AHS+A+ +VE+ALG++VP+ H +R++ Sbjct: 180 HRGVEKLFEGRNALGAREAVELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRAL 239 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 L+E+ERL++H+ +LG + VGF +RE+ + + + G R GGV Sbjct: 240 LVELERLYNHVTDLGALANDVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGVV 299 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------- 387 L + + + A+V+E+ E+ L + R +L + AR Sbjct: 300 LQELPDPAE-----LHAVAAEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYVA 354 Query: 388 -------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 D R DHP A +P T GGDV +R +R E S+A+ ++N Sbjct: 355 RASGIATDARLDHPTA---ELPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHHG 411 Query: 441 T----PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 P + +G VE RG +H + ++ R + ++ NWP L Sbjct: 412 RTRFAPPPAANGARSAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPALP 471 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTD 522 + V D PL S + Y+ D Sbjct: 472 VAMADTIVPDFPLANKSFNLSYAGND 497 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 173/396 (43%), Gaps = 45/396 (11%) Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 P N+ ++ +GP H ++ L +DGE + D + Y+HRG EKLAE+ Sbjct: 10 PEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAES-FT 68 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 Y ++ L+DR+ +C ++++A+ +VE LGIE P RA IR ++ E+ R+ HLL G Sbjct: 69 YTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITG 128 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 +G T + R RE M + E++ G+R +GGVR D+ + + Sbjct: 129 ALPMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREFC 188 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPY 395 + + +L RT+GIG++ + A D+R D PY Sbjct: 189 DIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEPY 248 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------ 449 Y + + T GD ++R RV E +S+ ++E +D MP+ P + + Sbjct: 249 EIYDRLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDMPTIAFPLD 308 Query: 450 ----------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAA 487 P +EAP+GE + + + K FR + RA Sbjct: 309 KDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRAP 368 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ N L + ++D ++GSLDP + D+ Sbjct: 369 SFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVDK 404 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 133/537 (24%), Positives = 228/537 (42%), Gaps = 48/537 (8%) Query: 23 GAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALS 82 VL T + ++ + + L + + + D + V + L Sbjct: 185 EDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNVLD-VPHEDTFIVEFTLH 243 Query: 83 MEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPD 142 K + + + + + S++ P++ + ERE+ + +G++ G R L D Sbjct: 244 NYENYKL-VTLAKRISRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLLD 302 Query: 143 DWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG--------------NSDARVIPVGP 188 PLRKD R E + E PF+ + D ++ VGP Sbjct: 303 V-STPKFPLRKDF-----RLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDEYILVVGP 356 Query: 189 LHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 H S GH RL V DG+ I D YVHRG+EK+AE+R+ + L +R C Sbjct: 357 QHPGS---GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIP-LVERPCITD 412 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + + Y ++E ALGIEV +RA IR+IL E+ R+ +HL + G+ F+G TGFM Sbjct: 413 FANYDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWA 472 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 F +RE +L G+R T + GGVR D+ E+ + ++V MR + + +M + Sbjct: 473 FGLREFVCEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFV 532 Query: 367 ATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFTFTGG 411 P + R + +GIL ++ A++L P Y Y + + T G Sbjct: 533 KNPTVVARLENVGILSKKDAKELGIVGPFLRASNVRHDWRLKGYEAYDCVDWDVVTAEEG 592 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK----PHAFALGFVEAPRGED 467 D ++R++VRV+E S+ +++ + ++P + + P + VE RG Sbjct: 593 DSYARLLVRVEEINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARGTI 652 Query: 468 VHWSMLGD-NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + +R+R ++ N +G ++D I GS DR Sbjct: 653 YMSIVSDGESTTPYRFRIVTPSWYNLRGFVEACKGERLADLQAIYGSFGYFPPEADR 709 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 203/485 (41%), Gaps = 25/485 (5%) Query: 54 YQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPA 113 Q G L ++G + T + ++ E ++ + A+ REFPS++ P Sbjct: 51 RQQGGRLLGIWGEHQDTAGANIHAFFL-----TESGYLWCTLPLPANLREFPSLSSVFPT 105 Query: 114 AVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPF 173 A ER IRD+ GL P+G PD R + WP ++HPL D Y + Sbjct: 106 ACRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMS--DIPEDILSCAGEIDYSY 163 Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 D IPVGP+H + EPGHFR GEQIV + RL Y H+G+E+L + + Sbjct: 164 RAPAGQDLHEIPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYCHKGIERLFVGQPP-D 222 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 L+ RV G A++ +Y +VE+ IE+ QRA +R + LE ERL +HL +LG Sbjct: 223 AALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGAL 282 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 + G Q ++E+ + + G R + +GGV D+ + + Sbjct: 283 GNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVDLDGRALQHIEQSSKA 342 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397 R + L +L + R G + + A DLR Sbjct: 343 WRRRLETLDLLLQEHAGLRDRLVATGPITAERAAYWGMAGLSGRASGQAWDLRTHFAPPP 402 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFAL 457 Y P + GDV +R VR E F L E + N+P ++ L Sbjct: 403 YDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGSPRVALKAFPKDGEGL 462 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 G E RGE L ++ + R +++ WPVL + + V+D PLI S + Sbjct: 463 GICEGWRGEVFVALRL-EDGHIARCHPHDPSWSLWPVLEEAVCQDIVADFPLINKSFNLS 521 Query: 518 YSCTD 522 YS D Sbjct: 522 YSGQD 526 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 177/369 (47%), Gaps = 22/369 (5%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 NE +++ + +GP H ++ +L VDGE I A + Y+HRG EKLAE + Y + Sbjct: 3 NELKTESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFL-YTQ 61 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +DR+ + ++ Y ++E L EVP+RA +R I +E+ R+ SHL+ G Sbjct: 62 FIPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTYL 121 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +G + F+ FR RE + + G+R T+ + IGGV+ D + L+ V E+ Sbjct: 122 LDIGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEEL 181 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADY 398 + ++SE ++ + RT G+G+L ++ + D+R PY+ Y Sbjct: 182 KHNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSVY 241 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL-----TEGFSYKPH 453 + + GDV++R VR++E +SL ++E A N+P+ ++ P Sbjct: 242 DHFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKPPE 301 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 EA +GE +++ K +R + R ++ N +L+ ML G ++ + I GS Sbjct: 302 GEVYTRAEASKGEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIFGS 361 Query: 514 LDPCYSCTD 522 LD D Sbjct: 362 LDVVLGEVD 370 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 172/387 (44%), Gaps = 47/387 (12%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + +GP H + L ++GE I + Y+HRG+EKL+E + Y + ++DR+ Sbjct: 12 TVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LTYVQSLPITDRM 70 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + ++V + +VE +GI++P+RA IR+I+ E+ R+ SHL+ + +G T Sbjct: 71 DYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIATHALDIGAMTV 130 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 F+ R RE + + E++ G+R T +GGVR D+ E +T K + E V E Sbjct: 131 FLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEEFPRKVEEYE 190 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 ++ +RT+G+G++ + A D+R PY Y + + Sbjct: 191 TLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDAYDKVDFEVP 250 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG--FSYKPH----------- 453 GD++ R R+ E S +++ ++ +PD +L E P Sbjct: 251 LGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPESPLKIDKKDII 310 Query: 454 -----------------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 VEAPRGE + + ++ K +R R RA ++ + VL Sbjct: 311 FDVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRAPSFVHAGVLP 370 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + G+ V+D IGS+D DR Sbjct: 371 KLCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 212/392 (54%), Gaps = 24/392 (6%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 IPVGP H + EP +F L VDGE I AD +L Y HRG+E+ ++ Y E +L Sbjct: 6 SGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSK-SYLENIYLL 64 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +R+CGIC AH+ ++ VE+ L ++VP+RA+ IR+++ E+ER+HSH+L LG++ H +GF Sbjct: 65 ERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGHEIGF 124 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 DT + +R RE + + E + G+R Y +N IGGVR+D+ EQR L+ + E+ + Sbjct: 125 DTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDELEERID 184 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 +E + + R + +G + ++AR D+R D PYA Y + Sbjct: 185 FYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAYDEMDF 244 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------PHAFAL 457 + T T GD+ +R VR++E +S++++ A ++PD L + P + Sbjct: 245 DVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQIPEDDVV 304 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 EAPRGE +H+ R R T ANWP + LRG+ ++D P+++ +DPC Sbjct: 305 SRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVVAGIDPC 364 Query: 518 YSCTDRVTL-VDVRKRQSKTVPYKEIERYGID 548 SCT R+ + D + +E+ YG++ Sbjct: 365 ISCTSRIGVETDGSHGGEDSFNLEELREYGME 396 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 164/365 (44%), Gaps = 19/365 (5%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 ++ +GP H ++ L + GE+I A L Y+HRG+EKL E+R Y + Sbjct: 1 MAEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQC 59 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +D++ + +++A+ +VE GI VP RA +R I E+ R+ SHL+ +G + Sbjct: 60 LPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLN 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T F+ FR REK + + +L+ G+R + +GGV D +E +T + + Sbjct: 120 DLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVP 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 + E ++ R +G+ + + +A D+R PY+ Y Sbjct: 180 EMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYD 239 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--LLTEGFSYKPHAFAL 457 + + T GD + R VR+KE +S ++ AL MP+ + P Sbjct: 240 RLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCRKVVSPNLRPPKGSVY 299 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 VE RGE + + K +R R ++ N L + RG V+D+ ++ +LDP Sbjct: 300 HRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDPL 359 Query: 518 YSCTD 522 D Sbjct: 360 MGEVD 364 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 127/359 (35%), Positives = 197/359 (54%), Gaps = 17/359 (4%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 +IP GP H EP H +L V+ E IV+A L YVHRG+E LA R YN++ ++ Sbjct: 2 SRTIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYIV 60 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +RVCGIC H++ Y +E + +EVP RA +R I E+ R+HSHLL LGL GF Sbjct: 61 ERVCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFGF 120 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 ++ FMQF+++RE+ M + E G+R +N++GGVRRD+ K Q+ L + ++ ++ Sbjct: 121 ESLFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELR 180 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKT 404 +L++ +L +++RT G+G+L + A L P YA + + Sbjct: 181 QLMKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQLGYAAFDELDFE 240 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 T GD ++R VR ET S+ ++ A+ +PD+ L KP + VE PR Sbjct: 241 PVTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSEL-AAKVPGKPTGEVVCRVEQPR 299 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+R Sbjct: 300 GELLYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTER 358 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 403 bits (1037), Expect = e-111, Method: Composition-based stats. Identities = 132/440 (30%), Positives = 200/440 (45%), Gaps = 26/440 (5%) Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 D R F ++ P + ER I D++GL PVGL D+R + WP M PL M Sbjct: 75 CDDRRFLALGNVRPGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRM-PLAAQPMA- 132 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 P+ + + YPF+ IPVGP+H EPGHFR GE +V + RL Y Sbjct: 133 -----PSAEPDRYPFLQAVGDGLHQIPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQ 187 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 H+G+E L + ++ + RV G A+S+A+ +VE A G EVP RAH +R ++ Sbjct: 188 HKGIEGLLQG-APLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMA 246 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ER+ +H+ ++G C+ F +REK + ++L G R + GGV D Sbjct: 247 EMERVANHVFDIGAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLD 306 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI------------- 385 + E L+ + + ++ TP++ RT GI+ + Sbjct: 307 LSDEGVEALKHLLYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRA 366 Query: 386 ---ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 D R Y Y + T+ T GDV +RV+VR E +SL ++ L MP+ Sbjct: 367 SGRGHDARETPSYPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMPEGA 426 Query: 443 LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 + +G E+ RGE V W LG + + R ++ WP+L + GN Sbjct: 427 VRVPLPEV--AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEAAIEGN 484 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 V+D PL S + YS D Sbjct: 485 IVADFPLCNKSFNCSYSGHD 504 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 104/406 (25%), Positives = 176/406 (43%), Gaps = 47/406 (11%) Query: 164 PTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGME 223 P+ ++ E S+ + VGP H ++ + + GEQI+ + Y+H G E Sbjct: 11 PSVEAYDIADAPELKSEVMTLNVGPQHPSTHGVLRVVVDLSGEQILRLTPHIGYLHTGFE 70 Query: 224 KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERL 283 K E R Y + + R+ + F+H +AY SVE +G +VP RA IR +L E+ R+ Sbjct: 71 KNMEHRT-YTQCITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRI 129 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 SHL+ LG G T F FR RE + + E + G R + IGG++ D+ E Sbjct: 130 ASHLVFLGTGLLDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEF 189 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------R 387 + K + +M A + E + +P +R +G+ ++ ++A Sbjct: 190 LGEVKKFIAQMPARIDEYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNY 249 Query: 388 DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP---DTPL- 443 D+R +PYA Y + TGGDVF R+++R+ E +S+ ++ A++ + P+ Sbjct: 250 DVRKAYPYAGYETYDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEALGPGPIR 309 Query: 444 -LTEGFSYKPH-------------------------AFALGFVEAPRGEDVHWSMLGDNQ 477 S P E+ RGE ++ + Sbjct: 310 DPNPQISLPPRHLLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYYIVSDGGS 369 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R + RA ++ N L Y +G ++D ++I SLDP DR Sbjct: 370 MPYRVKVRAPSFVNLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 172/390 (44%), Gaps = 48/390 (12%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 V+ +GP H + +GE++++ + Y+HRG+EKL+E++ Y L+D Sbjct: 13 TFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT-YPGAMTLTD 71 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+ I +++ Y +VE +GIE P RA IR+++ E+ RL SHLL L +G Sbjct: 72 RLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLATHALDIGAM 131 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T F+ FR RE+ + E + G+R T IGGVR DI + + K + M V E Sbjct: 132 TVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFMDLMLIRVDE 191 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 +L RT+G+G++ + A D+R PY Y I Sbjct: 192 YETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPYDAYSEIDFE 251 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT------------------- 445 + GD + R + R++E S+ +++ ++ MP+ +L+ Sbjct: 252 VPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPHQAKRKIEPG 311 Query: 446 ------------EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 E P +EAP+GE + + + + +R R RA ++ + Sbjct: 312 DSLWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRVRAPSFIHIS 371 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + G+ ++D IIG+LD DR Sbjct: 372 AIPKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 120/389 (30%), Positives = 206/389 (52%), Gaps = 20/389 (5%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 S +PVGP H +E +F++ +DGE++VD + ++HRG+EK++E +++ F+ Sbjct: 2 SKEFNLPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEEST-FDQSIFV 60 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +R+CGIC +H A N+ E+ IEVP +A IRS++ E+ER+HSHLL LGL+ HF+G Sbjct: 61 VERICGICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIG 120 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 +DT +M ++ RE + + E++ G+R YG IGGVRRD + + + + Sbjct: 121 YDTLWMWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKL 180 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIP 402 + + + + P + R G+G+L ++ +A D+R D PYA Y + Sbjct: 181 TMVAKAVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLD 240 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFSYKPHAFALGFV 460 + GD+F++ +VR+ E F+S+ M+ ++ + P+ + P +G Sbjct: 241 FGVVVREEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPIYND-VKEIPAGEGIGRH 299 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 EAPRGE H+ + + R + RA +Y N P + G ++D + + S+DPCY C Sbjct: 300 EAPRGEVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCC 359 Query: 521 TDRVTLVDVRKRQSKTVPYKEIERYGIDR 549 T+R + K T ++ + DR Sbjct: 360 TERSVRLQTEKGMEITSNLLKLSQDKTDR 388 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 145/489 (29%), Positives = 220/489 (44%), Gaps = 32/489 (6%) Query: 56 HDGWLPVLFGNDER-TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAA 114 + ++ G+D+ G V Y + G ++ + + D PS+ A Sbjct: 27 QGYRIALMAGHDDPAERGGTLRVVYVFTRAGTDQ-RVELTLRCDPADPHLPSLAGLSFPA 85 Query: 115 VWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFI 174 EREIRD++G++P G P RLV WP HP+R+DA + YPF Sbjct: 86 GRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRDAGPPPPFGDVDG---PYPFR 142 Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 IPVGP+H PGHFR V GE +++ RL++VHRG+EKL R Sbjct: 143 TVEGPGVYEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGR-AVAA 201 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 L++RV G H++AY +VE+A G+ + A IR+ILLE+ERL++H+ ++G Sbjct: 202 GVELAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALA 261 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 + VG R+RE+ + + + + G R G ++GGVR +L + + + Sbjct: 262 NDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGVRVRVLPDAGE-----LAAV 316 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPY--A 396 AD +E+V++ L + R G +L + A DL RFDHP Sbjct: 317 AADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVARASGVAVDARFDHPVPGL 376 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA---LDNMPDTPLLTEGFSYKPH 453 Y + T GDV SR +VR +E S+ M+ +D + S Sbjct: 377 VYDPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIAALAGQVDTTAPREVGGSTSSAAGV 436 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 +G VE RG VH L + +L R R ++ NWP L + V D PL S Sbjct: 437 RAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPALPLAMADTIVPDFPLANKS 496 Query: 514 LDPCYSCTD 522 + Y+ D Sbjct: 497 FNLSYAGND 505 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 206/477 (43%), Gaps = 33/477 (6%) Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVD------ADSREFPSVTPRVPAA-VWGEREIRD 123 N + V + EG +K + V D + F S+T V EREI + Sbjct: 40 RNEGFIVQFFAYEEGQKKHLLAVVRNRDLYVIGTEVGKSFQSLTGAVSEKFHMFEREIAE 99 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 YG+ P G P + + ++ KD E YPF + Sbjct: 100 QYGITPDGHPWLKMVRYHKNYAGA-----KDVFGNNYGKENIPG--NYPFFSVEGESIHE 152 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + VGP+H EPGHFR GE+++ + +L Y HRG+EK+ T + + + + Sbjct: 153 VAVGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPT-LPQKRFPIICESIA 211 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 G H ++ ++E GI V + A IR+ LE+ER+ +H+ +LG F+ Sbjct: 212 GDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPA 271 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 F R+R + + + ++L G+R GL GGV + +EQR + + E+ ++ + + Sbjct: 272 AYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICD 331 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 ++ + ++ R + G + + IA D+R P Y +P Sbjct: 332 LIFSAHTVQARFEHTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECYRELPANENR 391 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT--PLLTEGFSYKPHAFALGFVEAPRG 465 T GDV SR MVRV+E SL ++ ++ +T + + P+AF + E RG Sbjct: 392 VTNGDVNSRGMVRVEEIMHSLKLINILIEESENTASEVHMQDQILAPNAFIITLNEGWRG 451 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 E H + K+ R++ + ++ NW L LR +SD PL S + Y D Sbjct: 452 EISHCILTDKKGKVQRYKIKDPSFHNWTGLAMSLRNQEISDFPLCNKSFNLSYCGFD 508 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 164/367 (44%), Gaps = 23/367 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + + GP H + ++ +DGE + D + + Y+HR EK+ E + + + + Sbjct: 4 EEWTEVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYF 63 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 DR+ + + Y + E L +E P RA IR ++ E+ R+ SHL+ LG +G Sbjct: 64 -DRMDYVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLG 122 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 T F F+ REK + + + GSR+ IGGV +D+ E + + E ++ Sbjct: 123 MLTPFFYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKEL 182 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + + + + RT+G+GIL +++A D+R PY Y + Sbjct: 183 NMIANLFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVN 242 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG------FSYKPHAFA 456 + GD +R +VR++E S+ +++ + +P P + + Sbjct: 243 FDIPVSFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQKAKKPLMIRLRGQGEV 302 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 E+P+GE + + + + +R R R+ T+ N VL + +G ++D I GS+D Sbjct: 303 YARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGSIDL 362 Query: 517 CYSCTDR 523 + DR Sbjct: 363 VFGEVDR 369 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 400 bits (1027), Expect = e-110, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 172/395 (43%), Gaps = 47/395 (11%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 +E + V+ +GP H ++ + ++GE +V + ++H G+EK ET+ Y + Sbjct: 29 DENGEQSMVLSMGPQHPSTHGVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKT-YTK 87 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 L+DR+ + ++++ Y ++E + +VP+RA T+R +LLE+ R++SHL+ LG Sbjct: 88 SIVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGTHA 147 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 + + F R RE + + E+L G+R +GG+ DI + + Sbjct: 148 LDLAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLTHF 207 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADY 398 V E ++L +QRT+G+G+++ A DLR PY+ Y Sbjct: 208 LPKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYSGY 267 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN---MPDTPLLTEGFS------ 449 + GD++ R RV+E +S+ + A++ M P +TE Sbjct: 268 ETYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHGQPYVTENRKVAPPPK 327 Query: 450 ---------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P A +E+PRGE + + K +R RA + Sbjct: 328 SEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVSDGTPKPWRVHFRAPS 387 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + N L ++ +G ++D +I S+DP DR Sbjct: 388 FINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 167/364 (45%), Gaps = 19/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 ++ + +GP H ++ L +DGE++V + + Y+HRG+EKLAE R Y +V Sbjct: 9 RTEEIQLNMGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIP 67 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ + G +++ Y +VE LG+EVP+RA +R I+ E+ RL SH++ + + Sbjct: 68 YTDRLDYLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDL 127 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 T + FR RE+ + + E+ GSR T IGGV DI + ++ Sbjct: 128 SGWTAWFPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRM 187 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 ++E+ ++ + R QG+G +D + A DLR PY+ Y Sbjct: 188 IAEMNGLITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRF 247 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFALGF 459 + T GD + R ++R+ E S ++ A++ +PD P+ + P Sbjct: 248 DFDIPTLNNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAKVPRVLKLPRGEVYHQ 307 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +E +G + + K +R + ++ N L + G T+ D + I S+D Sbjct: 308 IEGAKGILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIVLG 367 Query: 520 CTDR 523 DR Sbjct: 368 EVDR 371 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 139/537 (25%), Positives = 228/537 (42%), Gaps = 45/537 (8%) Query: 28 EERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAE 87 E ++ + + V+ + L Q + +L D V++ + + Sbjct: 8 ERKEWSNALYVEVEPQYWYENAARLKDQGYLFPSMLTAVDW-PAEKKVQVFFLVH-RIRD 65 Query: 88 KCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRL------VLP 141 +V+ VD ++RE PS++ P W E E +M+G+ G PD R +L Sbjct: 66 ASSVVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGRIRKLLLS 125 Query: 142 DD---WPEDMHPLRKDAMDYR-LRPEPTTDSETYPFINEG-NSDARVIPVGPLHITSDEP 196 +D +P+D PL KD+ Y+ L + E EG D + VGP H + P Sbjct: 126 EDPRLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQEREGLREDLTYVYVGPQHPATHGP 185 Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Y Sbjct: 186 VGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKE-YLKVIPLLDRQCYIDGIGWEWPYVM 244 Query: 257 SVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTM 316 ++E + ++V +RA +R + E+ R+ SHLL +G V T F R RE + + Sbjct: 245 ALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFINL 304 Query: 317 AELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQ 376 E+L G R T+ GGV D+ + + K+V +L+E L P + R + Sbjct: 305 LEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNPTVAMRAE 364 Query: 377 GIGILDRQ----------------IARDLRFDHPYADYGN-IPKTLFTFTGGDVFSRVMV 419 G+ + + +A DLR + PY Y + I + GD R++V Sbjct: 365 GVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDRMLV 424 Query: 420 RVKETFDSLAMLEFALDNMPDTP--------LLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 R +E SL ++ L + + F KP A G+ ++PRGE+ Sbjct: 425 RFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKP-GIAYGYHDSPRGENGILL 483 Query: 472 MLGDN-----QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + +R R+ + + L+Y+ +G + D SLD C + DR Sbjct: 484 VANPSDPKWRTRPWRVHMRSPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVAEMDR 540 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 171/385 (44%), Gaps = 45/385 (11%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 V+ +GP H ++ RL ++GE ++ D + Y+HRG+EKL E+ Y + +DR Sbjct: 26 VLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHR-YAQFVPWTDRT 84 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + ++++ Y +VE GI+ P+RA R I+ E+ R+ SHL+ LG +G + Sbjct: 85 DYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGTHALDIGALSV 144 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 + FR RE + + E G+R T + IGG R+I + + R + + Sbjct: 145 SLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCRYFPKAIRQYE 204 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 ++L P RT+G+G+++ +A D+R PY Y + + Sbjct: 205 DLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYLLYDRVEFEVP 264 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSY--------------- 450 T GDV+ R +VR++E +L ++E L+ +P D PL+ Y Sbjct: 265 LGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLMAYESPYVIPPHKTVMTTAEDM 324 Query: 451 ------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 P VE +GE ++ + + +R R R + N L YM Sbjct: 325 QRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPIPYRVRIRTPDFVNLQSLPYM 384 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 +G ++D +IG++D DR Sbjct: 385 AQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 170/387 (43%), Gaps = 45/387 (11%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 V+ +GP H ++ RL ++GE I D + Y+HRG+EK+ E++ Y + T +D Sbjct: 25 EMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKR-YAQFTPWTD 83 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R + ++++ Y +VE LGIE P+RA R I+ E+ R+ SHL+ LG +G Sbjct: 84 RTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGTHALDIGAL 143 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + + FR RE + + E G+R T + IGG R I ++ E Sbjct: 144 SMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDFLKVFPQRQRE 203 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 ++L A P RT+G+G+++ +A D+R PY Y I Sbjct: 204 YEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQPYLLYDRIDFE 263 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSY------------- 450 + T GDV+ R +VR++E SL ++E LD +P D PL +Y Sbjct: 264 VPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKLAESNYVIPPHETVLTTAE 323 Query: 451 --------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 P +E +GE ++ + + +R R R + N L Sbjct: 324 DMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPVPYRLRIRTPDFVNLQSLP 383 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 Y+ G ++D +IG++D DR Sbjct: 384 YLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 131/455 (28%), Positives = 202/455 (44%), Gaps = 38/455 (8%) Query: 84 EGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDD 143 + E C +V + A +PSV P A+ ER +RD+YG IP G+PD+RR + Sbjct: 71 DAQENCRAIVSLSLKA--GAYPSVGLHHPPALRLERAMRDLYGAIPDGIPDERRWLDHGV 128 Query: 144 WPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFV 203 WP H Y F+ + IPVGP+H EPGHFR Sbjct: 129 WPGREH------------------EPGYHFLPVEGNGLHQIPVGPVHAGIIEPGHFRFTA 170 Query: 204 DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALG 263 +GE + + RL YVH+G+E LA+ + L+ R+ G A+S A++ +VE ALG Sbjct: 171 NGETVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAYSFAFSRAVEAALG 229 Query: 264 IEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGS 323 E+P RA +R ++ E+ERL H+ ++G C+ + +RE + L G Sbjct: 230 WEIPPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIREDILRTQAALFGH 289 Query: 324 RKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDR 383 R + GGV RDI L L+ + +V +P+++ RT G GI+ Sbjct: 290 RMMMDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPSIQNRTHGTGIVQL 349 Query: 384 QI----------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDS 427 A D R PY Y + + T DV +R+ +R++E +S Sbjct: 350 DFIRQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVDARIWIRIEEIAES 409 Query: 428 LAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAA 487 ++ L + D P+ ++P VEA RG+ + D ++ R A Sbjct: 410 AGIIRQLLAKLEDGPIHAAPPPFQP-GAGAALVEAFRGDLFLAVRIEDESRIAHMHARDA 468 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ WP+L + GN V+D PL S + YS D Sbjct: 469 SWFQWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 397 bits (1020), Expect = e-109, Method: Composition-based stats. Identities = 134/530 (25%), Positives = 235/530 (44%), Gaps = 26/530 (4%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGND---ERT 70 + K + + E + ++ + V+I+ + ++ ++ F D E Sbjct: 3 IDLFKEELSNLKYNSEIKNKNEIYVDVEISHVKSLISLFLVKYKLKFIAQFCVDNSNEEN 62 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + + LS ++ +++V+ + + F + + ERE+ D++GL Sbjct: 63 AQNDFMINIILS-NSKKRYFVIVRYKTQEEIKTFQ---DILFQSHLFEREMCDLFGLKIK 118 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLH 190 D R++V + WPED++PLRK Y + E + Y A I VGP+H Sbjct: 119 DGIDTRKIVKHEKWPEDVYPLRKSFP-YGAKLEEKNEILPYKCKEAFGDGAYQISVGPVH 177 Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 EPGHFR V GE I + + RL Y HRG+EK+ E + +++ + +R+ A+ Sbjct: 178 AGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNLVFERMACESSAAY 236 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVR 310 + +Y VE L + PQ +R +LLE+ER+++ L ++ C +GF +F Sbjct: 237 AESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYPAKRFGAFG 296 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 E+ + E + GSR + + G+ D KE K + M+ + +++E+ L + + Sbjct: 297 EQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKIIEITLDSVS 356 Query: 371 MEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVF 414 R + GI+ + A D+R PY YG + K T G VF Sbjct: 357 FLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNNTLEIGGVF 416 Query: 415 SRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-GFSYKPHAFALGFVEAPRGEDVHWSML 473 R +++KE +D+ + +LD + L T+ F AL VE +GE + + + Sbjct: 417 ERYKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAVETVKGELIVYGKV 476 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 G + K R + + NW L Y + G V D PL S + YS D+ Sbjct: 477 GKDNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSENDK 526 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 396 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 101/413 (24%), Positives = 164/413 (39%), Gaps = 45/413 (10%) Query: 155 AMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYR 214 A + S E + D + +GP H ++ ++ ++GE + AD Sbjct: 15 ATAQQAGGGTPVRSGPPDEGGEFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPI 74 Query: 215 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIR 274 + Y+HRG EK+AE M YN+ +DR+ + A+++AY +VE G+ VP R IR Sbjct: 75 IGYLHRGDEKIAEN-MTYNQFVPYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIR 133 Query: 275 SILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGG 334 I E+ R+ SHL+ LG VG T + RE + E L G+R T IGG Sbjct: 134 VITAELARISSHLMGLGAFGLDVGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGG 193 Query: 335 VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ---------- 384 V RD+ + + E++ +L RT G+G++ ++ Sbjct: 194 VTRDVPPGWLENVGTFCDKFLPALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGP 253 Query: 385 ------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM 438 IA DLR D PY+ Y + T GD + R +VR +E S+ ++ + N Sbjct: 254 NARGSGIATDLRKDRPYSGYEQYEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNF 313 Query: 439 PDTPLLTEGFSY----------------------------KPHAFALGFVEAPRGEDVHW 470 P P E P+G + Sbjct: 314 PGGDWYATEAKKVFLPPKGKVLSSMEELIQQFMLVTEGPQMPAGEVYFEAENPKGILGFY 373 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + R+ ++ N ++ + +G +SD I+GSLD DR Sbjct: 374 IVSKGGGVPYRLKIRSPSFCNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 171/389 (43%), Gaps = 45/389 (11%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + ++ +GP H + + +DGE I + + Y+HRG+EKLAE + Y E Sbjct: 64 ENEMILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKT-YQEFMPY 122 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DR+ + ++++VA+ +VE IEVP+RA IR I+ E+ R+ SH L LG+ G Sbjct: 123 TDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAG 182 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 +GF+ F+ RE+ ++ + + G+R T + IGGV D V + Sbjct: 183 AVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVANDFSPRAIEMIRDFVDTFPDRI 242 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + +L +R +G+G + ++ A D+R PY Y + Sbjct: 243 AGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVD 302 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE---------------- 446 T+ GD +R +R+ E S+ ++E LD M + P+ ++ Sbjct: 303 FTIPVREEGDCLARYFLRLDEMKQSVRIIEQCLDRMTEGPIRSDDAKEAYPSKEEVYYSM 362 Query: 447 ------------GFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 G A + +E P+GE + + +R R A ++ N Sbjct: 363 EGMIHDFMYTDVGTVPPKGAHSYHAIEGPKGELGFYLTSDGTGRPWRVRINAPSFTNLQA 422 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +ML G V+D +IIGSLDP D+ Sbjct: 423 MEHMLEGEMVADTVVIIGSLDPVMGEADK 451 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 117/469 (24%), Positives = 189/469 (40%), Gaps = 27/469 (5%) Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 +G +Y L+ I+ + EFPS+ + P EREI + G+ Sbjct: 48 PADGAITLYCLLASPADGVLGIMQTI---CNGTEFPSIAVQCPQLQLFEREIAEQCGIRF 104 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPL 189 VG P + + +H + + + + + + VGP+ Sbjct: 105 VGHPWFKPV-------RFVHSAVRGHDAWGRADDQPIQVGVMEYYRVEGEEIHEVAVGPV 157 Query: 190 HITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 H EPGHFR GEQ+ + L Y HRG+E+L + + + + G Sbjct: 158 HAGVIEPGHFRFQCHGEQVFHLEISLGYQHRGIEQLLLNG-PHPQTLRQMEAIAGDTSIG 216 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRV 309 H +AY +E+ P AH +R I LE+ERL +H +LG VG+ R+ Sbjct: 217 HGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIAGDVGYLPTASFCGRI 276 Query: 310 REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATP 369 R + M+ + GSR GL GG + + QR + + RA+++ +E+L TP Sbjct: 277 RGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRLATGRAELTSAIELLWNTP 336 Query: 370 NMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDV 413 ++ R +G G++ + A RD+R D+P+ Y + T GDV Sbjct: 337 SVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIYRMAQVPIATAHHGDV 396 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 SR VR +E SL L +P E + + E RGE H ++ Sbjct: 397 CSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQLTVALTEGWRGEICHLAIT 456 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + +++ ++ NW L LR +SD PL S + Y D Sbjct: 457 DSAGRFRQYKITDPSFHNWQGLAMALRNEQISDFPLCNKSFNLSYCGFD 505 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 175/372 (47%), Gaps = 28/372 (7%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + I +GP H ++ + VDGE IVD Y+HR E+LAE Y + Sbjct: 4 TQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVST-YIQSMPY 62 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DR+ A++ A +VE GI VPQRA IR +++E+ R+ +H +G + +G Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122 Query: 299 F-DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 T M R REK + + E+ G+R GGV RD+ E Q +L++ + + Sbjct: 123 AWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSF 182 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 E +L + RT +G+L +++A D+R PY+ Y + Sbjct: 183 FDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDEL 242 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT----------PLLTEGFSYK 451 + + GDV+ R ++R++E S +L+ ++ +PDT + + Sbjct: 243 DFDIPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKALRP 302 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P A +E+P+GE + + +++ +R++ RA ++ N L M RG+ V+D +I+ Sbjct: 303 PPGDAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVVVIL 362 Query: 512 GSLDPCYSCTDR 523 GS+D D+ Sbjct: 363 GSIDIVMGEVDK 374 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 125/401 (31%), Positives = 212/401 (52%), Gaps = 32/401 (7%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 +P+GP+H EP +F ++GE I D+ HRG+E + R ++ L DR Sbjct: 8 YELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPV-QILHLCDR 66 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 +CGICG H++ + +VE IEVP RA+ +R+I+ E ER+ SH+L G++ H +GFDT Sbjct: 67 ICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDT 126 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 F +++RE+S+ + E + G+R YG+ ++GG RRDI + + + ++ + ++ Sbjct: 127 LFYLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKM 186 Query: 362 VEMLLATPNMEQRTQGIGILDR----------------QIARDLRFDHPYADYGNIPKTL 405 V + L + R + GIL + +A D+R D PYA YG++ + Sbjct: 187 VNLFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDI 246 Query: 406 FT------FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-------YKP 452 GDV+ R++VR+ E S+ ++ + MP+ P+L E K Sbjct: 247 VLPDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKLLMNLKKA 306 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQK-LFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 A VEAPRGED+H+ + Q+ W+ +A+TY+N +L+G ++D P+I+ Sbjct: 307 SGEAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQIADIPIIV 366 Query: 512 GSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 S+DPC SCTDRV +V + + + + + R +++ R Sbjct: 367 ASIDPCMSCTDRVAVV-GQDGNAGIMTKEHLHRLSVEKTRR 406 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 139/481 (28%), Positives = 215/481 (44%), Gaps = 24/481 (4%) Query: 58 GWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWG 117 G L L+G+D R + +AV A + + + +D +P ++ AV Sbjct: 78 GRLVSLWGSDRRAMGDGFAVGAAYATAEG---LLWAELGLDVVRPAYPDISRFFVPAVRM 134 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 +R D+ G+ D R + WP D PLR + + YPF+ Sbjct: 135 QRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLRIENTGQERF---APQPDNYPFVFVE 191 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 I VGP+H + EPGHFR V GE+++ + R Y H+G+E+ M +E Sbjct: 192 GDGVHEIAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFGYTHKGIERRFMG-MDIDEGAR 250 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L+ RV G A++ AY + E+A G+ VP+RA +R++LLE ER+ +HL +LG + Sbjct: 251 LAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRALLLERERVANHLGDLGALGNDA 310 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 F QF R+RE + G R GGV RD+ Q + + A+ Sbjct: 311 AFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVARDLDAAAAAQLRRDAVALVAE 370 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 V+EL ++ ++ R G + ++A DLR D P+ Y + Sbjct: 371 VAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGRASGQVADLRVDFPWPPYDKL 430 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVE 461 T T GDV +RV VR E F+SL +++ L +PD PL + + A G++E Sbjct: 431 AVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPDGPLDAP-VAIRDAASGAGWIE 489 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 RGE ++ R C ++ NWPV+ + N V+D PLI S + YS Sbjct: 490 GWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASIDNIVADFPLINKSFNLGYSAQ 549 Query: 522 D 522 D Sbjct: 550 D 550 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 135/400 (33%), Positives = 219/400 (54%), Gaps = 32/400 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H +EP F + +DGE+I+ D +L Y RG+E +A R Y ++ +L +R+C Sbjct: 11 IPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRR-NYIQLLYLVERIC 69 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H+ YT +VE GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVL 129 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD-VSELV 362 + RE+ M + E + G+R Y +N IGGVRRDI ++ + L +++ R + + ++ Sbjct: 130 HLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPKVE 189 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 E+ L P +E R + G++ ++IA +D+R++ Y + Sbjct: 190 EIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGIKPI 249 Query: 407 TFTG------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-------YKPH 453 T GDVF R++VRV E + S+ ++E A D MP+ + T K Sbjct: 250 TPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKAE 309 Query: 454 AFALGFVEAPRGEDVHWSMLG-DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 +G EAPRGE +H+ +W+ R T+ N + L G ++D P+ I Sbjct: 310 GAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPVAIA 369 Query: 513 SLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 S+DPC SCTDRV ++D + + + K++ + I++ + Sbjct: 370 SIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEKTKE 409 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 133/523 (25%), Positives = 224/523 (42%), Gaps = 35/523 (6%) Query: 27 DEERQTPEQVTI---TVKINLLPDVVQYLYYQHD----GWLPVLFGNDERTLNGHYAVYY 79 + + P ++ T++ + L + Q L + R G ++V Y Sbjct: 5 ESSTERPIELLFETQTLRPDKLLEAAQSLLDDLGDTPSAHGRIQCAYALRDAEGKFSVRY 64 Query: 80 ALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLV 139 +S +GA + W + VDA S PS+ +P W EREI+D+YG+ P+ L+ Sbjct: 65 IIS-QGANQPWGIWS--VDASSGTLPSLANVLPLLGWYEREIQDLYGITFTDHPEPYPLI 121 Query: 140 LPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHF 199 L + + PL+ +E + N D + +P GP+ E F Sbjct: 122 LHEGFIPAKPPLQTGFDPKAEPIR--GQAEPFAEANMVGDDIQRLPFGPIRADVVESAQF 179 Query: 200 RLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVE 259 GE I+ RLFY HR ME E + + L++RV G+ AH +A++ ++E Sbjct: 180 VFHYIGEGILHYHPRLFYKHRAMEARFEG-VPISAACVLAERVSGVDSVAHVLAFSQAME 238 Query: 260 NALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAEL 319 ALG + P RA R +L E+ERL++HL G + + E+ + Sbjct: 239 AALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGIWLEEQVKQINGR 298 Query: 320 LIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG 379 L GSR G+ + GG+RRD+ + + ++ + + ++ L T + R G Sbjct: 299 LTGSRFLRGVIVPGGLRRDLDATA---LIADLNALQPQIEDYLDTLANTRSYLDRLLTTG 355 Query: 380 ILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKE 423 +L RQ+A RDLR DH YA Y + + T T GD +R VR +E Sbjct: 356 VLPRQVAFDQGATGPIERASDLDRDLRRDHGYALYPELQFAVPTATEGDADARARVRDQE 415 Query: 424 TFDSLAMLEFALDNMPDTPLLTEGFSYKP--HAFALGFVEAPRGEDVHWSMLG-DNQKLF 480 SL ++ AL+ + P+ + P LG+ EA RG ++ ++L Sbjct: 416 IRQSLHLIRQALNKLEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIYAVHWDAKTERLT 475 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R + + +++NW V + + + + D + S + DR Sbjct: 476 RVKIKEPSFSNWRVFPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 94/431 (21%), Positives = 162/431 (37%), Gaps = 45/431 (10%) Query: 136 RRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDE 195 R+ +W + +P ++ P + + + GP H + Sbjct: 35 RQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKN-ITLNFGPQHPAAHG 93 Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 + + GE + D + +HRG EKL E + Y + DR+ + + AY+ Sbjct: 94 VLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT-YLQALPYFDRLDYVSMMCNEQAYS 152 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMT 315 +VE L I P RA IR + E+ RL +H++ + +G T F F REK Sbjct: 153 LAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFE 212 Query: 316 MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 E + G+R GGV +D+ + + + EL E+L RT Sbjct: 213 FYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRT 272 Query: 376 QGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMV 419 IG++ + A DLR PY Y + + + GD + R + Sbjct: 273 IDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLC 332 Query: 420 RVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---------------------------P 452 RV+E SL ++ L+ MP + + P Sbjct: 333 RVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVP 392 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 +EAP+GE + + + + +R + +A +A+ L M +G+ ++D IIG Sbjct: 393 PGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIG 452 Query: 513 SLDPCYSCTDR 523 + D + DR Sbjct: 453 TQDIVFGEVDR 463 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 136/593 (22%), Positives = 224/593 (37%), Gaps = 85/593 (14%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDER 69 G+ ++ LK Q G ++ I L + + L + Sbjct: 202 GKDLVKNLKAQLNGLYTSITVTDKNRIAIKTSPENLVETSRKLSDTMGVDHVKSVNVIDV 261 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVD---ADSREFPSVTPRVPAAVWGEREIRDMYG 126 + V Y +S E +++ + E PS+T +A + ERE+ D +G Sbjct: 262 PHERKFMVEYMVSGYTEELMPVILTIFTEIGREAEPEIPSLTSLWESANYSERELHDFFG 321 Query: 127 LIPVGLPDQR-RLVLPDDWPEDMHPLRKDAM-----DYRLRPEPTTDSETYP-------- 172 + G + + +L D P+ PLRKD P T + T P Sbjct: 322 VKFKGNEGMKGKFLLAPDTPDT--PLRKDFKLEEEQYTIEEGVPLTPTITPPHYMPPSSS 379 Query: 173 -------------------FINEGNSDARVIPVGPLHITSDEPGHFR--LFVDGEQIVDA 211 +D V +GP H S GH R + + G+ I D Sbjct: 380 LSYSESELEDLKMPAYEDVLKEAEKNDEFVAFIGPHHSGS---GHLRWVMRMKGDIIKDV 436 Query: 212 DYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAH 271 YVHR MEK+AE R+ V L++R ++ Y ++ENALGIEVP+RA Sbjct: 437 IPDPGYVHRSMEKIAENRLYIQNVP-LTERPNISDPINMNLGYVRAIENALGIEVPERAK 495 Query: 272 TIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNL 331 IR+I+ E+ R+ + ++G+ F+G TGFM F +RE + + + GSR T + Sbjct: 496 YIRTIMAELSRIGAFFYDMGIFPLFMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIV 555 Query: 332 IGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----- 386 GG+RRDI + +T K + + + + + P + R + +G+L R+ A Sbjct: 556 PGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGI 615 Query: 387 -----------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL 435 D+R PY Y + T GD R+ R++E S+ ++ A+ Sbjct: 616 VGPFLRASGVEYDVRKAEPYEVYDKLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAV 675 Query: 436 D---NMPDTPLLTEGF---------------------SYKPHAFALGFVEAPRGEDVHWS 471 D MP +++E P EA RG ++ Sbjct: 676 DAVQEMPRGGVISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSI 735 Query: 472 MLGD-NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + +R R + N + +G V+D + S DR Sbjct: 736 ISDGESNVPYRVRIITPCWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 390 bits (1002), Expect = e-107, Method: Composition-based stats. Identities = 128/401 (31%), Positives = 203/401 (50%), Gaps = 32/401 (7%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A IP+GP+H EP V+GE+IV D + + HRG+E + R + +LS+ Sbjct: 5 AYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTLYLSE 63 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC +H A+ + E ALGIE P RA IR I+ E+ER+HSH+L LG+ H +GFD Sbjct: 64 RICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEMGFD 123 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + ++ REK + + ELL G+R Y + +IGGVRRD+ + + + Sbjct: 124 SLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKFTEQ 183 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPK- 403 + E++L+ P + RT+G+ L +++A D+R D PY Y +I Sbjct: 184 MKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADIDVR 243 Query: 404 -----TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG-------FSYK 451 + GD + MVR+ E SL ++E+ +DN+P+ +L + Sbjct: 244 AVVPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLAKIRR 303 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 A+G EAPRGE VH+ W+ A +Y N +L G V+D P+++ Sbjct: 304 TKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADIPIVV 363 Query: 512 GSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 +DPC C DRV L ++ + K + Y+ I + +++ R Sbjct: 364 AYIDPCMCCNDRVAL--LKTPEGKVLGYEYIHKKAVEKTRK 402 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 138/403 (34%), Positives = 214/403 (53%), Gaps = 35/403 (8%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 IP GP+H +EP F L +DGE+IV+ D +L Y RG++ +A R Y ++ +L++R Sbjct: 9 IKIPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAER 67 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 +CGIC F+H+ YT +VE A GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 68 ICGICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDT 127 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 + RE+ M + E + G+R Y + IGGVRRDI ++ + L +++ R+ + ++ Sbjct: 128 VLHLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQI 187 Query: 362 VEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 E+ L P +E R + ++ +++A D R+ Y ++ Sbjct: 188 EEVFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKP 247 Query: 406 FTFTG-------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT--------EGFSY 450 GDVF R VR+ E + SL MLE ALD MP+ + T Sbjct: 248 VMPQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKI 307 Query: 451 KPHAFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 +G EAPRGE VH+ + K RW+ R T+ N + + G+ V+D L Sbjct: 308 MVDGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTFPNLFAVAKGVTGDQVADFVL 367 Query: 510 IIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 + S+DPC SCTDRV +V + + + + ++ R I + R Sbjct: 368 AVASIDPCLSCTDRVAVV--QDGKKRILTETDLLRLSIKKTRE 408 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 199/387 (51%), Gaps = 21/387 (5%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 IPVGP H EP + + DGE+IV+ + Y HRG+EKL E Y ++ F+ RV Sbjct: 14 EIPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDI-FIVARV 72 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC H+ Y ++E L + +RA +R + +E ER+HSH+L + +GFD+ Sbjct: 73 CGICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSL 132 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM RE M E++ G+R +IGGVRRDI ++ + LK++ ++ + Sbjct: 133 FMNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYK 192 Query: 363 EMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLF 406 ++ + + +R +G++ R + D+R Y YG+IP + Sbjct: 193 KLFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMV 252 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD----TPLLTEGFSYKPHAFALGFVEA 462 T GD ++R++VR E +SL M ++ L+++P+ P P A VEA Sbjct: 253 TRNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEA 312 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 PRGE ++ M K +R + + ++ N Y+ G+T++D P+I+ SLDPC SC + Sbjct: 313 PRGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISCME 372 Query: 523 RVTLVDVRKRQSKTVPYKEIERYGIDR 549 RVT++D+ + VP KE+ G R Sbjct: 373 RVTVIDLENNTRRKVPIKELAGGGRKR 399 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 130/407 (31%), Positives = 200/407 (49%), Gaps = 66/407 (16%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 ++P GP H EP H +L ++ E +++A L YVHRG+E+L E R +N++ + +R Sbjct: 4 TILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQIVER 62 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 VCGIC H++ Y VE +G+EVP+RA +R+I E+ R+HSHLL LGL GF++ Sbjct: 63 VCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFGFES 122 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 FMQF+RVRE+ M + E G+R +N+IGGVRRD+ EQ L + + ++ +L Sbjct: 123 LFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEIKQL 182 Query: 362 VEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLF 406 +L +++RT GIG+L ++ A L P YA + + Sbjct: 183 QTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQTGYAAFDELGFEPV 242 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP------------------------ 442 GGD ++R VR +ET S+ ++ A+ MP Sbjct: 243 VEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGERRD 302 Query: 443 --------------------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDN 476 L+ KP A+ VE PRGE +++ + Sbjct: 303 IMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNGS 362 Query: 477 QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 363 KNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 132/356 (37%), Positives = 190/356 (53%), Gaps = 18/356 (5%) Query: 185 PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 P+GP H +E + L ++GE +VDA+ ++ ++HR +EK A R ++ L +R CG Sbjct: 6 PLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLG-LVERTCG 64 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFM 304 IC F HS AY +VE A G+EVP+RA IR + E+ER+HSHL+ LG H +GFDT FM Sbjct: 65 ICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFM 124 Query: 305 QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEM 364 + RE M M ELL G+R Y +N +GGVRRD+ + Q + + +L + Sbjct: 125 FTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDT 184 Query: 365 LLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTF 408 ++ RT+ +GI+ R+ A DLR PYA Y + L Sbjct: 185 WSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDLVVL 244 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-PHAFALGFVEAPRGED 467 GDV+SR VRV E +S+ ++ LD MP + K +G VEAPRGE Sbjct: 245 DDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPRGEL 304 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 305 AYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 106/390 (27%), Positives = 167/390 (42%), Gaps = 43/390 (11%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E ++ VI +GP H + + +DGE +VD L Y+HR MEK+AE+R + Sbjct: 5 ETRAERMVINLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYL 64 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +++ R + N+ E G++VP+RA IR I+LE+ R+ SHLL LG Sbjct: 65 PYVT-RWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFMA 123 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G + F FR RE + E G R + +GGV D+ + + Sbjct: 124 DIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLP 183 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + E ++ P R +G+G + R+ A DLR Y Y Sbjct: 184 PKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYD 243 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-------------- 445 + + TGGD +R +VR++E +S+ M+ ALD +P P Sbjct: 244 ELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKSEW 303 Query: 446 EGFSY------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 GF Y P VEAP+GE + + D+ +RW+ R + N Sbjct: 304 NGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPPGFINLA 363 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VL +++G ++D I+GS+D DR Sbjct: 364 VLPKLVQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 121/437 (27%), Positives = 176/437 (40%), Gaps = 33/437 (7%) Query: 103 EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP 162 +PS+TP P W ERE+ + +G++P G P + P+R RP Sbjct: 73 RYPSLTPDCPQCHWFERELYEQWGILPDGHPWLK-------------PIRFTTPPGAGRP 119 Query: 163 EPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM 222 P Y + + VGP+H EPGHFR GE++ + L + HRG+ Sbjct: 120 RPAPGVTDY--FQVRGEEVHEVAVGPVHAGIIEPGHFRFQCFGEEVFHLEISLGFQHRGI 177 Query: 223 EKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVER 282 E + V F+ + G HS+A+ +E G P R I LE+ER Sbjct: 178 EAMLAGGPDPRTVHFM-ETAAGDTSIGHSLAHAAVIEALSGRTAPPRGRAIGRAALELER 236 Query: 283 LHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 L +H +LG VGF R+R + M LL G+R GL GG D+ Sbjct: 237 LANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCGNRFGRGLVRPGGTAFDVDTG 296 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IA 386 + R E+L A+ + R +G G L + +A Sbjct: 297 LLRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLTAEKALDLGLVGPPARACGLA 356 Query: 387 RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT- 445 RD R P G L GDV++R +VR E SL L+ L ++PD P Sbjct: 357 RDARRTFPQPGAGARDIALSLHDFGDVYARGLVRRLEMEASLDFLDGLLADLPDGPTREL 416 Query: 446 EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVS 505 P A+G +E RGE H ++ G + + ++ ++ NW L LRG +S Sbjct: 417 LPGRLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKIIDPSFHNWFGLAQALRGQQIS 476 Query: 506 DAPLIIGSLDPCYSCTD 522 D PL S + Y D Sbjct: 477 DFPLCNKSFNLSYCGHD 493 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 92/408 (22%), Positives = 161/408 (39%), Gaps = 62/408 (15%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + + ++ +GP H ++ L +DGE + +A + Y+H G+EK E R T Sbjct: 34 SDDERIIVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEFRNWTQGTT 93 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLGLSC 294 F++ R+ + F + AY VE LGIE +P RA +R +L+E+ RL SHL+ + Sbjct: 94 FVT-RMDYLTPFFNETAYCLGVEKLLGIEDQIPDRATVLRVLLMELNRLSSHLVCIATGG 152 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +G T + FR RE + + EL G R + GG+ +D+ + + ++ M Sbjct: 153 MELGATTIMIYGFRDRELVLDLFELFTGLRMNHAFVRPGGLAQDLPPGAVDRLREFIKTM 212 Query: 355 RADVSELVEMLLATPNMEQRTQGIGIL----------------DRQIARDLRFDHPYADY 398 + ++ E ++ P + R Q +G L + DLR PY Y Sbjct: 213 KKNLPEYDKLATGNPIFKARMQDVGYLDLTGCMALGATGPVLRSAGLPHDLRKSDPYCGY 272 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--------- 449 + T D + R ++R++E SL ++E +D + P++ Sbjct: 273 ETYDFEVPTADTCDSYGRFLIRLEEMRQSLRIIEQCIDRLEPGPVMVADKKIAWPAQLAL 332 Query: 450 ----------------------------------YKPHAFALGFVEAPRGEDVHWSMLGD 475 P VE+P+GE + Sbjct: 333 GPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEGFRVPPGQVYTAVESPKGELGVHVVSDG 392 Query: 476 NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R R ++ N + M G V+D + + S+DP DR Sbjct: 393 GTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 102/387 (26%), Positives = 178/387 (45%), Gaps = 47/387 (12%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + GP H + L +DGE++VDA + Y+H G EK+ E + +N+ ++DR+ Sbjct: 19 TLNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHSGFEKIGE-HLDFNQYVTVTDRM 77 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 I A++VA+ +VE +GIE+ R IR+I+ E+ R+ HLL+ G G T Sbjct: 78 NYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDHLLSTGAMGLDTGAFTF 137 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 F+ F RE+ + E L G+R T +GG+ +D+ + +R + ++ Sbjct: 138 FLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQTIDDME 197 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 ++ R +G+G+L ++ A RDLR D PY YG++ + Sbjct: 198 RLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDLRKDEPYLAYGDLDFQVC 257 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP------------------------ 442 T GD F+R VR+ E +SL ++ AL+N+P P Sbjct: 258 CATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNVGMDDRAALPSKAEVYQTIEGT 317 Query: 443 ------LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 ++ P+ +EAP GE + + + +R RCR ++ ++ + Sbjct: 318 ITHFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVAYRARCRPPSFIHFSLFP 377 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++RG+T+SD ++GSL+ + DR Sbjct: 378 ELIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 174/369 (47%), Gaps = 20/369 (5%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 +E + + +GP H L +DGE IV D + Y+HR EK+AE R Y Sbjct: 29 RDEFGLETLDMNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRT-YP 87 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 V L+DR+ + Y +VE+ LG+E+P RA IR ++ E+ R+ SHL ++G Sbjct: 88 AVIPLTDRLDYFANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFL 147 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G T + FR RE+ E + G+R + IGGV+ D+ + + + V Sbjct: 148 LLELGAFTPILYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEG 207 Query: 354 MRADVS-ELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYA 396 + + + ++++ +RT+GI L ++ +A D+R D+PY+ Sbjct: 208 LEKRIKPDFIDLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYS 267 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHA 454 Y + + T T GDV + VR+KE ++S+ ++ L+ MP+ ++ + P Sbjct: 268 VYPELDFEVVTDTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRPPEG 327 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 G VE PRGE + + +R R ++ N +L+ + G+ + D I+G + Sbjct: 328 EGFGRVEGPRGEFAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPIMGLV 387 Query: 515 DPCYSCTDR 523 DP D+ Sbjct: 388 DPVSGGWDK 396 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 186/361 (51%), Gaps = 18/361 (4%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 IPVGPLH+ +EP +FR+ VDGE++V D +VHRG+E LA R Y + L+ Sbjct: 2 STYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-LT 60 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +RVC +C +H Y ++E+ G+ VP RA +R I E +R+ SH+ N+ + H VGF Sbjct: 61 ERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGF 120 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV- 358 D+ FM RE E + G+R IGGV+ D+ K+ R + + ++ + Sbjct: 121 DSLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLR 180 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIP 402 E++ + P++ RT+GIG+L A D+R PYA Y + Sbjct: 181 DEIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLD 240 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEA 462 + GDV+SR MVR +E S+ ++ L +MPD P P A+ EA Sbjct: 241 FEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEA 300 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 PRGE +++ + R + R TY NW L M+ G +SD PLI+ S+DPC SCT+ Sbjct: 301 PRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCTE 360 Query: 523 R 523 R Sbjct: 361 R 361 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 124/402 (30%), Positives = 196/402 (48%), Gaps = 33/402 (8%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 +P+GP+H EP V+GE+IV D + + HRG+E + R + +LS+ Sbjct: 5 TYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTLYLSE 63 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC +H A+ E ALGIE P RA IR+I+ E+ER+HSH+L LG+ H +GFD Sbjct: 64 RICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIGFD 123 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + ++ REK + + E + G+R Y + +IGGVRRD+ + ++ Sbjct: 124 SLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFTEH 183 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 + E+ L+ P + RT+G+ + + +A D+R D PY Y +I Sbjct: 184 MKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADIDVK 243 Query: 405 LFTFTG------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-------EGFSYK 451 GD + MVR+ E SL ++E+ +DN+P+ +L K Sbjct: 244 AVVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKIKK 303 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 +G EAPRGE VH+ W+ A +Y N Y L G V+D P++ Sbjct: 304 TEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAEVADIPVV 363 Query: 511 IGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 + +DPC C DRV +V + K + Y + R +++ R+ Sbjct: 364 VAYIDPCMCCNDRVAVV--KDSTGKILDYSILHRKAVEKTRA 403 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 100/390 (25%), Positives = 161/390 (41%), Gaps = 46/390 (11%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +++ + VGP H ++ + +DGE + + Y+H G EK E R Y + Sbjct: 25 HTEVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRT-YQQGVT 83 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 + R + F H +AY SVE + +VP RA IR IL E+ R+HSHL+ +G + Sbjct: 84 YAPRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDL 143 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G T F FR +E + + E G R G +GG+ RD+ ++ + + +M Sbjct: 144 GALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERG 203 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYADYGNI 401 V E + P R +G+G++ +A DL R HPY Y Sbjct: 204 VDEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAY 263 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT-------------------- 441 + + T GD +R +R+ E +S+ ++ AL + Sbjct: 264 DFNVISSTDGDSLARFTMRLLEFSESIKIIRQALARLKPGLIKDPNRKISLPPRHELETS 323 Query: 442 --------PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 L+TEGF P VE RGE ++ + +R + RA ++ N Sbjct: 324 MEAVIHHFKLVTEGFH-PPTGEVYVPVEGARGEVGYYIVSDGGSVPYRVKIRAPSFVNLQ 382 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 L Y G +D I+ ++DP DR Sbjct: 383 ALEYACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 121/486 (24%), Positives = 202/486 (41%), Gaps = 45/486 (9%) Query: 53 YYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVP 112 + L FG + + + L+++ + A + S +PS+TP+ P Sbjct: 36 MLESGARLCSWFGVPD---HDGTILVAVLALDSESILGV---ARSEPISGSYPSLTPKHP 89 Query: 113 AAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYP 172 A ERE+ + +GL+PVG P + P+R + P Sbjct: 90 QAHLFEREVWEQHGLVPVGHPWLK-------------PVRHTFENAPANA---------P 127 Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 F + + VGP+H EPGHFR GE+++ + L Y HRG+E + + Sbjct: 128 FFRVEGGEVHEVAVGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRGIEDALQNG-PH 186 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + V G AH+ A+ + +E G+E P RA +R++ LE+ERL +H ++G Sbjct: 187 PATMNQIETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALELERLANHTGDMGA 246 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 V F ++R + + LL G+R GL GG R D+ +E+ + ++ Sbjct: 247 LAMDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLEEERLKTLTERLK 306 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 ADV + + ++ R + +G++ A RD+RFDHP Sbjct: 307 AHMADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACGLVRDVRFDHPAG 366 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFA 456 + + + GD+F+R VR E S L L D + + +P + A Sbjct: 367 WHRFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGDITAALPAPQPESLA 426 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 + VE RGE H ++ + ++ ++ NW L LRG VSD P+ S + Sbjct: 427 VALVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGTAVSDFPICNKSFNL 486 Query: 517 CYSCTD 522 Y D Sbjct: 487 SYCGFD 492 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 100/419 (23%), Positives = 169/419 (40%), Gaps = 62/419 (14%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 +D E + E ++ V+ +GP H ++ L ++GE + + + Y+H G+EK Sbjct: 65 SDWEQILGVGEEENERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKS 124 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERL 283 E R VTFL+ R + + AY SVE LGI +VP+RA IR +++E++R+ Sbjct: 125 CEYRTWTQAVTFLT-RADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRI 183 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 SHL+ L +G T + FR REK + + EL+ G R + GG+ +D+ Sbjct: 184 ASHLVWLATGGMELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGA 243 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IAR 387 + +M + E +L P + R + +LD + Sbjct: 244 ERAIRAFLADMPKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPW 303 Query: 388 DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG 447 DLR PY Y + T GD F+R +VR++E +SL +++ LD + P++ Sbjct: 304 DLRKTMPYCGYETYEFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLRPGPVMVAD 363 Query: 448 FS-------------------------------------------YKPHAFALGFVEAPR 464 P +E+PR Sbjct: 364 KKIAWPSQLSVGSDGTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPR 423 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE + + + FR R ++ N + + G V+D + + S+DP DR Sbjct: 424 GELGYHVVSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 482 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 127/523 (24%), Positives = 215/523 (41%), Gaps = 45/523 (8%) Query: 42 INLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADS 101 + L +V++ L + D N Y+ + G + W+ V D ++ Sbjct: 31 KDDLLNVIKDLKQAGVKTCSTVSPTDFIDENKIEVNYFLEDLFGKKNVWLKVDIERDLEN 90 Query: 102 REFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR 161 E S+TP +P+A W E E +G+ G PD R ++ D+ P RKD D++ Sbjct: 91 CEIDSITPLMPSANWHELEAYSTFGVKFKGHPDLRYFLISRDYYGK-FPFRKDF-DWKAH 148 Query: 162 PEPTTDS------------ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 E + E + V+ GP H S P +++ +GE I Sbjct: 149 EENLIQNINDITEEYFEEYEEHEEKLGHEGSRTVLNWGPTHPAS-GPIRLKVYTNGENIE 207 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 + + YV R +E LAE R + +R+C + + Y+ +VE G E+ + Sbjct: 208 KIEPDIGYVWRALEHLAE-RKDFIGTIVAVERICFMDNPNPMICYSQAVEEIAGKEITEF 266 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 A +R IL E R+ SHL++LG +G T M +RE + + E G+R Sbjct: 267 AKYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLDIREYFLDVLEDYSGARIATAC 326 Query: 330 NLIGGVRRDILK--EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGI------- 380 GGVR + K +++ +++ ++ + P M R +G G+ Sbjct: 327 VEPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFMKNPLMNTRAKGNGVFTLDDVA 386 Query: 381 ---LDRQIAR------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAML 431 L IAR D+R D PYA Y + T GD R+ + KE ++ ++ Sbjct: 387 EYYLAGPIARASGAKIDVRIDEPYAAYDKLEMEYATCENGDARDRLYIIFKELEQAMDLI 446 Query: 432 EFALDNMPDT----------PLLTEGFSYKPHAFALGFVEAPRGE-DVHWSMLGDNQKLF 480 + A+ + + L + P A+ +E RGE +H + + Sbjct: 447 KQAMAKIEEGIEAGEMDPKKDHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEKSTSPY 506 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R + +A + + +L +LRG T+SD PL+ GS+ C DR Sbjct: 507 RLKIKAPSVNHTMMLDKLLRGKTLSDIPLLYGSMHICQGDLDR 549 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 384 bits (986), Expect = e-105, Method: Composition-based stats. Identities = 131/401 (32%), Positives = 212/401 (52%), Gaps = 35/401 (8%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP+H +EP F + +DGE+IV+ D +L Y RG++ + R Y ++ +L++R+C Sbjct: 10 IPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRR-NYVQIMYLAERMC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F+H+ Y +VE GIEVP+RA IR I+ E+ER+HSHLLNLG+ H +G+DT Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVL 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + RE+ M + E + G+R Y + IGGVRRDI ++Q+ L +++ R + ++ + Sbjct: 129 HLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIED 188 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 + L +E R + + ++ +++A D R+ Y ++ T Sbjct: 189 VFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVT 248 Query: 408 FTG-------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT--------EGFSYKP 452 GDV+ R+ VR+ E + SL +LE ALD MP+ + T Sbjct: 249 PEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLG 308 Query: 453 HAFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 +G EAPRGE VH+ RW+ R T+ N + L GN ++D + I Sbjct: 309 DGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLVVAI 368 Query: 512 GSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 S+DPC SCTDRV +V ++ + + K++ + I++ + Sbjct: 369 ASIDPCLSCTDRVAIV--KEGKKVVLTEKDLLKLSIEKTKE 407 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 184/391 (47%), Gaps = 44/391 (11%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E + D + +GP H ++ +L ++GE ++ D + Y+H G+EK E+R Y++V Sbjct: 13 EESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRT-YHQV 71 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L DR+ + G A A+ ++E + IEVP+RA TIR ILLE+ R+ SHLL G S Sbjct: 72 FTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSAL 131 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + + FM F REK + + E + G+R L IGG+ +D+ + + + + Sbjct: 132 ELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQ 191 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 EL +L +R QG+ ++D++I D+R +PY Y Sbjct: 192 KIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYE 251 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY--------- 450 N + T GD ++R +VR++E S++++E A+ + +LT Sbjct: 252 NYNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTNDRKVALPPRKELA 311 Query: 451 ------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 P VE+ RGE H+ + K +R R R+ ++++ Sbjct: 312 RSMEAVIHQFKLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSFSHV 371 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VL+ +LRG+ +SD + I S+DP DR Sbjct: 372 EVLKKVLRGHVISDVVVAIASVDPILGDVDR 402 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 102/379 (26%), Positives = 164/379 (43%), Gaps = 21/379 (5%) Query: 165 TTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEK 224 D T F ++ ++ +GP H ++ L +DGE IV A+ L Y+HR EK Sbjct: 29 AGDGYTCRFEQGARPESLILNMGPQHPSTHGVLRVLLELDGEYIVRAEPVLGYLHRMHEK 88 Query: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 +AE + + RV + A + AY +VE GIE+P+RA +R I E+ R+ Sbjct: 89 MAEVKTPA-QFMPNMGRVDYLHALAWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRIS 147 Query: 285 SHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 SHLL G +G T M F RE + + +L+ GSR TY GGV D Sbjct: 148 SHLLWWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFV 207 Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARD 388 + + +R+ + ++ + +R + +G++ + IA D Sbjct: 208 QGVRQFIPHLRSRLPMYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYD 267 Query: 389 LRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF 448 +R PY+ Y + +R MVR+ E SL ++E A++N+PD + Sbjct: 268 VRRAEPYSVYDRFDYEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLPDGEHMHPKA 327 Query: 449 SYK----PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 P + VE RG+ W + +R + RA ++N + RG + Sbjct: 328 PKPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGFSNLALFAECARGTLL 387 Query: 505 SDAPLIIGSLDPCYSCTDR 523 +DA I+GSLD DR Sbjct: 388 ADAVAILGSLDMVIPEIDR 406 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 102/411 (24%), Positives = 168/411 (40%), Gaps = 45/411 (10%) Query: 156 MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRL 215 DYR R E + S P + + +GP H ++ L ++GE + D + Sbjct: 5 SDYRRREESISYSAE-PAGMGLEQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPII 63 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 YVH G+EK AE + Y +V + +R+ + + ++ A+ +VE L ++VP+RA +R Sbjct: 64 GYVHTGIEKTAEQK-AYWKVIPVVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRV 122 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 I +E+ R+ SHL+ LG SC +G + FR RE+ + + E+ G R +GGV Sbjct: 123 IHMELNRIMSHLVWLGTSCIDLGAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGV 182 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI---------- 385 DI + + + + MR + +L QR + G +D + Sbjct: 183 IEDIPRGWTERVKRFTKTMRERSEQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPL 242 Query: 386 ------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 DLR PY Y + + T GD + R VR E +S A+++ A+D +P Sbjct: 243 LRATGNPWDLRKAAPYCSYDDFRFRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGLP 302 Query: 440 DTPLLTEGFS---------------------------YKPHAFALGFVEAPRGEDVHWSM 472 + P +TE P +E+PRGE + Sbjct: 303 EGPFITEDRKVALPPRHELATSMEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVR 362 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + K R R ++ N R ++D + LDP DR Sbjct: 363 SDGSSKPARVHMRDPSFVNLQATAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 157/411 (38%), Gaps = 70/411 (17%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDAD--------------------------YRL 215 + GP H + L ++GE+I+ D + Sbjct: 89 FTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVCILQPHV 148 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 +HRG EKL E + Y + DR+ + + + Y+ +VE L IEVP+RA IR+ Sbjct: 149 GLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERAKWIRT 207 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 + E+ R+ +H + + VG T F+ F REK M E + G+R GGV Sbjct: 208 MFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHAAYVRPGGV 267 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA--------- 386 D+ K + + V E+ E++ + RT GIG + Q A Sbjct: 268 AYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEALDYGFSGVM 327 Query: 387 -------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 D+R PY Y + + GD + R + RV+E SL ++E L+ MP Sbjct: 328 LRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRIIEQCLNKMP 387 Query: 440 DTPLLTEGFSY---------------------------KPHAFALGFVEAPRGEDVHWSM 472 + + P +EAP+GE + + Sbjct: 388 AGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPKGEMGVYLV 447 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + RA +A+ +M R + + D IIG+LD + DR Sbjct: 448 SDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 498 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 122/356 (34%), Positives = 192/356 (53%), Gaps = 17/356 (4%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +IP+GP H EP HF L + E+++DA + YVHRG+E+L E R + + ++DR+ Sbjct: 6 IIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKR-DFIDFAHVADRI 64 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CG+C F HS+ Y +VE + IEVPQRA +RSI E+ R+HSH+ LG + GF++ Sbjct: 65 CGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGFESL 124 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FMQ R+RE + + E G R G+ +GGVRRDI + + + ++ + EL Sbjct: 125 FMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALEELS 184 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFT 407 + L +++ R G+G L R+ A L P YA Y + Sbjct: 185 NVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRALGYAAYKYLEVEPVV 244 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 + GD +R VR++E F ++ ++ A+ +P P+ + + P VE PRGE Sbjct: 245 ESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVK-VTGTPDGEYYSRVEQPRGEV 303 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +H+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT+R Sbjct: 304 IHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCTER 359 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 193/360 (53%), Gaps = 23/360 (6%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++RV Sbjct: 4 TVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAERV 61 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC HS + +VE+ + +E+P+RA IR+I+LE+ERLHSHLL +GL+ +GF+ Sbjct: 62 CGICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENL 121 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM FR RE + + E G+R +G+NL+GGV R+I E + + + +L Sbjct: 122 FMLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLE 181 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 +M++ + ++ R +G+GIL +Q A D+R D PY YG + Sbjct: 182 DMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHV 241 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFA---LDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 G DV++R +VRV+E F S+ ++ L+ +PD L P VE P Sbjct: 242 VEEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDIL--AKSKTMPDGDGFARVEPP 299 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 300 RGELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 156/395 (39%), Gaps = 48/395 (12%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E I GP H + L +DGE + D + +HRG EKL E + Y + Sbjct: 3 EAAPRNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKT-YLQA 61 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 DR+ + A+ + E L I +P+R IR + E+ RL SHLLN+ Sbjct: 62 LPYFDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAM 121 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 VG T + F REK M E G+R +GGV +D+ + Sbjct: 122 DVGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDPFL 181 Query: 356 ADVSELVEMLLATPNMEQRTQGI--------------GILDR--QIARDLRFDHPYADYG 399 +L +L +QR GI G++ R A DLR PY Y Sbjct: 182 KVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYECYS 241 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN--MPDT---------------- 441 + + GD + R +VR++E S+ +++ L+ +P+ Sbjct: 242 ELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPPSR 301 Query: 442 -------PLLTEGFSY------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 + E F P VEAP+GE + + + ++ + RA + Sbjct: 302 AEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQPYKCKIRAPS 361 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +A+ + ++ RG+ ++D IIGSLD + DR Sbjct: 362 FAHLSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 184/360 (51%), Gaps = 18/360 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A VIP GP H EP H L V E++++ ++ ++HRG+EKL E + ++ ++++ Sbjct: 4 ATVIPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIYVAE 62 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC F HS+ Y +VE +G+EVP+RA +R IL E+ R+HSHLL LGL+ GF+ Sbjct: 63 RICGICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGFE 122 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 FM +R+RE+ + + E G R IGGV RDI E+ Q + MR++ +E Sbjct: 123 ALFMHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYAE 182 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYA---------------DYGNIP-KT 404 L+ L ++ R +G L + A DL P+A YG + Sbjct: 183 LMATFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELENFQ 242 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA-FALGFVEAP 463 GD ++RV VR KE S+ +++ + +P + P A +E P Sbjct: 243 PILDDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAANVLEQP 302 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE +++ ++ L R R R T N L G ++D P I+ ++DPC SCT+R Sbjct: 303 RGECYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPCISCTER 362 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 209/507 (41%), Gaps = 48/507 (9%) Query: 40 VKINLLPDVVQYL--YYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 + L +++Q Q L LFG L + V A+ ++ A+ ++++A Sbjct: 15 IAATSLQELMQLCGQRLQAGERLLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATA 73 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 + +T + PAA ERE+ + GL P P + + Sbjct: 74 QR-GEHYRCLTAQHPAAQIFERELWEQTGLFPDDHPWLKPV------------------- 113 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 R E YPF + + VGP+H + EPGHFR GE + + +L Y Sbjct: 114 -RFEGERQQRMLEYPFFKVRGQEVHEVGVGPIHASVIEPGHFRFMCLGENVHHLEIQLGY 172 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 HRG+E L R + ++T L + +CG A++ Y ++E V R+I Sbjct: 173 QHRGVEGLLLRRPVW-QLTPLVESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAIA 231 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 LE+ER+ HL LG + F G + R+R + ++ + G+R G G + Sbjct: 232 LEMERIAMHLATLGGMATDIAFLQGGATYGRLRTAIINASQRVCGNRFGRGWIRP-GQAK 290 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL-------- 389 + + + + +R D +++ +++LA +++ R G G + +Q A DL Sbjct: 291 PLSEALQQDLTRTLRAFAPDFTQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVAR 350 Query: 390 --------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM--- 438 R P A YG+ P + T GD ++R+ +R++E SLA L L + Sbjct: 351 ASGVALDHRTQWPGAAYGHAPLPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTLN 410 Query: 439 ---PDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 + + + A + VE RG + +L ++ + + ANW L Sbjct: 411 LSQAGQAQSSTPAALQAEALCVSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFGL 470 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + +R N +SD P+ S D Y D Sbjct: 471 AFAMRDNAISDFPICNKSFDLSYCGND 497 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 132/407 (32%), Positives = 207/407 (50%), Gaps = 31/407 (7%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + +P+GP+H+ EP L ++GE I DA R +HRG+E +A R +V Sbjct: 1 MSETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QV 59 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +L++RVCGIC F+H++A+ +VE+A IEVP RA IRS++LE+ER+HSH+L G++C+ Sbjct: 60 IYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +GFD+ F +REK M + E L G+R Y + +GGVR D+ + ++ R Sbjct: 120 TIGFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYR 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYG 399 + + E + P ++ R + +G+L + A D+R+ PY Y Sbjct: 180 NEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYC 239 Query: 400 NIPKTLFTFTG------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG------ 447 +I GDV+ R +VRV E SL +LE ++ +P+ + E Sbjct: 240 DIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLL 299 Query: 448 -FSYKPHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGNTVS 505 K G +EAPRG+D H L Q + W+ RA TY+N M + N ++ Sbjct: 300 TVLKKAEGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPLMFKDNELA 359 Query: 506 DAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 DAPLII S+DPC SC +R+ L D V ++ + ++ Sbjct: 360 DAPLIINSIDPCISCMERMVLSDTSSGTKSVVTKADLLKLCREKTDK 406 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 132/452 (29%), Positives = 193/452 (42%), Gaps = 23/452 (5%) Query: 87 EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPE 146 + +++ + D+ FPS++ P A ER I D++GLIP GL D R + W Sbjct: 67 REGLVLLSLSLPKDAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLW-- 124 Query: 147 DMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 HP R YPF+ IPVGP+H EPGHFR V GE Sbjct: 125 -SHPPLSHTPSPLTRL---AQGMDYPFVRVRGDGVHEIPVGPVHAGIIEPGHFRFSVVGE 180 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 +++ + R+ Y H+G+ +L R E L+ R+ G A S+A++ +VE AL IE+ Sbjct: 181 KVLRLETRMGYTHKGIARLFRGR-NLPEAARLASRISGDSAVATSLAFSKAVEEALDIEI 239 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 + +R+ILLE ER+ +HL +LG + G F +RE + L G R Sbjct: 240 SEGVRFVRAILLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRLL 299 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA 386 + + GGV + L ++A+VS L + ++ R Q GIL ++A Sbjct: 300 FDSVVPGGVSTGLSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEVA 359 Query: 387 ----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 DLR DH L GDV SRV +R E F+SL + Sbjct: 360 GRLGIGGVAGRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLRL 419 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 L + P + G VE RGE + W + + L + Sbjct: 420 THALLTSFPGPDICATIPDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSPL 479 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 W L + GN V+D PLI S +P YS +D Sbjct: 480 LWHALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 105/412 (25%), Positives = 166/412 (40%), Gaps = 71/412 (17%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 V+ +GP H + L +DGE +V AD + +HRG EKLAE++ +N+ DR Sbjct: 26 YVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESK-PFNQSIGYMDR 84 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + + + AY ++E LGIE P RA IR++ E+ R+ +HL+N+G +G Sbjct: 85 LDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGTGALDLGAMA 144 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ------------------ 343 + FR RE+ M E + G+R GGV R++ ++ Sbjct: 145 VMLYAFREREELMDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKESRWKTGKQLRRLN 204 Query: 344 -------RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ------------ 384 RE + E +L +QRT GIG++ Q Sbjct: 205 AAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWKQRTVGIGVVSPQQAMEWGMTGVML 264 Query: 385 ----IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP- 439 +A DLR PYA Y + + T GD + R + RV E S ++ +D + Sbjct: 265 RGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDRYLCRVAEMRQSNRIIRQCVDWLRA 324 Query: 440 -DTPLLTEGFSY---------------------------KPHAFALGFVEAPRGEDVHWS 471 P++ F P VEAP+GE + Sbjct: 325 NPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSEGYQVPAGETYAAVEAPKGEFGCYL 384 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + K FR RA +A+ L ++RG+ ++D +IG+ D + DR Sbjct: 385 ISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADVVAMIGTYDIVFGEVDR 436 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 132/449 (29%), Positives = 200/449 (44%), Gaps = 29/449 (6%) Query: 96 LVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDA 155 V + R PS+ ++P W ERE+ D+YGL G P+ LVL + P D PL Sbjct: 92 RVRPEDRTLPSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLVLHEGEPRDPAPLASGF 151 Query: 156 MDYRLRPEPTTDSETYPFI--NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADY 213 P D P I D + +P GP+ E F F GE I+ Sbjct: 152 ----DPAAPARDYAPLPPIVPQVQGPDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHP 207 Query: 214 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTI 273 RLFY HR ME + L++RV GI AH++A+ +VE A+G P RA + Sbjct: 208 RLFYKHRAMEGRFQGATLATGAV-LAERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYL 266 Query: 274 RSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG 333 R +L E+ERL++HL LG G + + E+ + L GSR GL G Sbjct: 267 RVVLAELERLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQINGRLTGSRFLRGLITPG 326 Query: 334 GVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------- 386 G+RRD+ + L V + ++ ++ L T + R G L+RQ+A Sbjct: 327 GLRRDLDITGLDKALDSVND---EIDRYLQRLENTRSHLDRLMTTGRLERQVAFDQGACG 383 Query: 387 ---------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN 437 RDLR DHPYA+Y + ++ GGD +R MVR++E +SLA++ + Sbjct: 384 PIERASNLDRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGR 443 Query: 438 MPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWS-MLGDNQKLFRWRCRAATYANWPV 494 +L P LG+VEA RG ++ + D +L R + + +++NW V Sbjct: 444 TKPGEVLRFDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRV 503 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + + D + S + DR Sbjct: 504 FPFTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 223/502 (44%), Gaps = 38/502 (7%) Query: 39 TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVD 98 V L + L+ L ++ +D+ V Y + G + ++ +V Sbjct: 10 RVSERGLIATAEQLWADS-FRLALVAAHDD---GDSLRVVYLF-LAGYPDRRVELEYVVP 64 Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 AD+ E S+ A ERE+ D+YG+ PVG P RRLV WP D HP+R DA Sbjct: 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPA 123 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 TD+ +PF+ IPVGP+H EPGHFR V GE IV RL++V Sbjct: 124 P----EFTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFV 179 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG+EKL R L++R+ G AH++A++ ++E+ALGIE+P H +R++++ Sbjct: 180 HRGIEKLFHGR-PATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIV 238 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ERL++H +LG + VG+ R+RE + + G R G GGV Sbjct: 239 ELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALR 298 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------ 386 L + + + D++E+ + LA + R G +L A Sbjct: 299 ALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARA 353 Query: 387 ----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 D R +HP +P T GDV +R VR E S A+ + +++ P Sbjct: 354 SGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVES-HTGP 409 Query: 443 L--LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 + + +G VE RG VH + + ++ R + ++ NWP L + Sbjct: 410 IEYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMA 469 Query: 501 GNTVSDAPLIIGSLDPCYSCTD 522 V D PL S + Y+ D Sbjct: 470 DTIVPDFPLANKSFNQSYAGND 491 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 171/390 (43%), Gaps = 49/390 (12%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 + GP H + L +DGE IV A + Y+H G EKL E + +N+ + DR Sbjct: 21 YTLNFGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED-LDFNQYVTIVDR 79 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + I FA+ A+ +VE +GIE+ R +R+IL E+ R+ HLL +G + +G T Sbjct: 80 MNYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALDLGALT 139 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 GF+ F REK + E G R +GG+ D+ + V+ R +++ Sbjct: 140 GFLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRKVHADI 199 Query: 362 VEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP--K 403 +L RT+GIG+L ++ A RDLR D PY Y + Sbjct: 200 CRLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKELSGAF 259 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----------LLTEGFSYK-- 451 + GGD ++R +VR+ E +S ++ A++N+P P + + +Y+ Sbjct: 260 KIVCGKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKNATYRSI 319 Query: 452 ------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 P G E GE + + K FR R R ++ ++ Sbjct: 320 EGLIQHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPSFIHFA 379 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 V M+ G+ +SD P ++GSL+ + DR Sbjct: 380 VFPMMMEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 132/442 (29%), Positives = 194/442 (43%), Gaps = 36/442 (8%) Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 FPS+ PA W ERE+ + +GL+P G P + PLR Y Sbjct: 2 EAQGSFPSLAEEFPALDWFERELWEDHGLVPEGHPSLK-------------PLRNHHSVY 48 Query: 159 RLRPEPTTDSE-TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 + P YPF +PVGP+H EPGHFR V GE+I+ + RL Y Sbjct: 49 SRQAVPKGIVRLPYPFDRV--EGLHEVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGY 106 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 HRG+E+L + + + L++R G AH++A+ +VE ALG+EVP RA+ +R +L Sbjct: 107 QHRGVEQLFQGK-SLEQALLLAER-AGGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVL 164 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 LE+ERL HL +L +G+ Q +VR E L G R +GGV Sbjct: 165 LELERLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHRYGRNALTVGGVGF 224 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYAD 397 DI E +++ + ++ A+ + L P + R + +G L + AR L P A Sbjct: 225 DIDPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAAR 284 Query: 398 YGNIP------------KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-----D 440 + T +GGDV +R V +E L+ L +P + Sbjct: 285 ACGLGRDLRQDDALYQTFTPVVRSGGDVLARAQVYAEELRQGFVYLDRFLGALPQGEVAN 344 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 P A A VEA RGE +W L N ++ R + ++ NW L +R Sbjct: 345 GPTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALELAVR 403 Query: 501 GNTVSDAPLIIGSLDPCYSCTD 522 G + D P+I S D Y+ D Sbjct: 404 GMGLPDFPIINKSFDLSYAGCD 425 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 178/385 (46%), Gaps = 27/385 (7%) Query: 165 TTDSETYPFINEGNS------DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 + YP E ++ +GP H P L ++GE++ A + Y+ Sbjct: 7 VPERPKYPTFREREEAEIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYI 66 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 H+G+EK+ E R Y + +DR+C + ++ AY +VE LGI P+RA IR IL Sbjct: 67 HKGIEKIMENRT-YLQGIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILA 125 Query: 279 EVERLHSHLLNLGLSCHFVGFDT--GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 E+ R+ SHLL G +G T F RE + + E + G+R T+ GGVR Sbjct: 126 ELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVR 185 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------- 387 D+ + +++ MR E +++L + P +R +GIG+L AR Sbjct: 186 NDLPDGFADKARPILKRMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPL 245 Query: 388 -------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 D+R + P Y ++ + T GD +RV VR++E +S+ ++E LD +PD Sbjct: 246 RASDTPYDMRREDPILVYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPD 305 Query: 441 TPLLTEGFSY--KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 P+ + A VE PRGE + + ++K +R + R YA L + Sbjct: 306 GPIQEKLPKKIKPEPGEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQALPPL 365 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 L G V+D I GS+D C S DR Sbjct: 366 LEGAYVADVVAIAGSMDACTSEVDR 390 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 164/392 (41%), Gaps = 43/392 (10%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 D ++ +GP H + + +DGE +VD + L Y+HRGMEK+AE R Sbjct: 3 RPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQ 62 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + +++ R + N E I+VP+RA IR I+LE+ R+ SHLL LG Sbjct: 63 YLPYVT-RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPF 121 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G T F FR RE + E G R + IGG+ D+ + L Sbjct: 122 MADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDY 181 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 +V E +++ P +R +G+GI+ + A DLR Y Sbjct: 182 FLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYES 241 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP---LLTEGFSYKPHA 454 Y + GD +R +VR+ E +S+ +++ AL+ +P P L + GF K + Sbjct: 242 YDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNP 301 Query: 455 FA-----------------------LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 VEAP+GE + + + +RW+ R + N Sbjct: 302 EWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFIN 361 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L +++ ++D I+GS+D DR Sbjct: 362 LQILPELVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 371 bits (952), Expect = e-101, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 190/362 (52%), Gaps = 24/362 (6%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 I GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+R Sbjct: 3 TTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSER 60 Query: 242 VCGICGFAHSVAYTNSVE-NALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 VC IC HS + VE G+E+P+RA IR+I+LE+ERLHSH L +GL+ +GF+ Sbjct: 61 VCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFE 120 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 FM FR RE+ + + E G+R +G+N++GGV R+I E + L ++ E Sbjct: 121 NMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHE 180 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 + +++++ ++QR QG+G++ ++A D+R P+ Y + T Sbjct: 181 IERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVT 240 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEF---ALDNMPDTPLLTEGFSYKPHAFALGFVE 461 GD ++R +VRV+E F S+ ++ LD PD L P + VE Sbjct: 241 PIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDE--LFAKSKAMPEGENIARVE 298 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 APRGE ++ +++L R + R +TY N + +++G+ ++D LI + DPC C Sbjct: 299 APRGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCF 358 Query: 522 DR 523 DR Sbjct: 359 DR 360 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 159/369 (43%), Gaps = 20/369 (5%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + + I +GP H + + +DGE + +A+ + Y+HR EK+ E R + Sbjct: 32 MGHAPHETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRT-WA 90 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + + R+ + ++ A+ VE L IEVP+RA IR I E+ R+ SH + G Sbjct: 91 KFLPNTSRIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGAL 150 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G T + F REK + + E L G+R TY GG+ D + T + V+ Sbjct: 151 LLDLGGFTPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKY 210 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397 MR + +++ + QR GIG + +A D+R PY+ Sbjct: 211 MRPRLKMYRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSV 270 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---PHA 454 Y + + T+ D +R +VR+ E +SL ++E LD + P + P Sbjct: 271 YPKLQFKIPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAPKVPRVIRLPAG 330 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 VEA RG + + + +R R R ++ N + RG + DA ++GSL Sbjct: 331 DYTYAVEAARGRFMVRVVSDGKENPYRARLRTPSFGNLSLFEETSRGMLLPDALAMMGSL 390 Query: 515 DPCYSCTDR 523 D DR Sbjct: 391 DLVIPDIDR 399 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 150/568 (26%), Positives = 228/568 (40%), Gaps = 79/568 (13%) Query: 26 LDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEG 85 + P V +V + + + G L L+G + G Y V A ++ Sbjct: 7 IASAAGQPRAVFASVDADAWTRAAETIR-TAGGRLVTLWGGE--PAAGRYEVCAAYELDD 63 Query: 86 AEKCWIVVKALVDA----------------------------DSREFPSVTPRVPAAVWG 117 W+ + A ++ +P ++ +A Sbjct: 64 G-LLWLRLPVEPAANVGREAGDTSNAGNASNAGDADGVRQRGEAGSYPDLSAIFASATRM 122 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 +R + D+ GL G D R + WP D HPLR+ A T D YPF+ Sbjct: 123 QRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGERFEYATAD---YPFVPVA 179 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 I VGP+H EPGHFR V GE+++ + RL Y HRG+E+L E R + Sbjct: 180 GDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFE-RADALAGSR 238 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L+ R+ G A + AY ++E AL I VP RA +R++LLE ER+ +HL +LG + Sbjct: 239 LAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDA 298 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 GF G F R++E + M + + G R + GGV RDI + + + + Sbjct: 299 GFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIERE 358 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNI 401 V + + ++ R G G LD Q RD+R DH A Y + Sbjct: 359 VRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDAL 418 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHA----- 454 + GDV +RV VR ET++S+ + L ++PD L E P A Sbjct: 419 RIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARADAG 478 Query: 455 --------------------FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 +G++E RG L + R C ++ NWP Sbjct: 479 GACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPA 538 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 L + + GN V+D PLI S + Y+ D Sbjct: 539 LEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 104/404 (25%), Positives = 175/404 (43%), Gaps = 52/404 (12%) Query: 169 ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 228 E F E N ++ GP H ++ L + E IV A + Y+HRGMEK+AE Sbjct: 12 ENITFDREDNE--MILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAEN 69 Query: 229 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 288 M YNE +DR+ I A++ + +VE +G+EVP+RA IR +LLE+ RL SHL Sbjct: 70 -MIYNEFMPTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLF 128 Query: 289 NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 L + +G T F+ FR RE M + E G+R T+ IGGV DI Q Sbjct: 129 WLATTALDIGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLK 188 Query: 349 KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFD 392 + ++ ++ + ++L R + +G++ ++ +A D+R + Sbjct: 189 TFLDKLPQNIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKE 248 Query: 393 HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD---------------- 436 PY Y + + GD F+R + ++E +S +L +D Sbjct: 249 EPYELYDEVEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAH 308 Query: 437 -----NMPDTPLLTEGFSY------------KPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 + P ++T+ +S P E+P+GE + Sbjct: 309 APKYISAPKLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYP 368 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R + RA ++ + +L +L G+ + D IIG+ + + DR Sbjct: 369 YRLKLRAPSFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 159/370 (42%), Gaps = 26/370 (7%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 D + +GP H ++ F + DGE I A + Y+HR +EK+ E R Y+ Sbjct: 20 DDEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTYSGFMPY 78 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DRV I + A+ ++ E +GIEVP+RA +R I E+ R+ SH++ LG VG Sbjct: 79 TDRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVG 138 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 T F R RE E L G+R T+ + IGGV D+ K + + + Sbjct: 139 AVTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIM 198 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 E ++ +R + ++ + A DLR + Y+ Y + Sbjct: 199 VEFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELE 258 Query: 403 KTLFTFTG-----GDVFSRVMVRVKETFDSLAMLEFALDNM---PDTPLLTE-GFSYKPH 453 + G GD + R VRV+E +S +L ALD + P+ +L + +P Sbjct: 259 FDVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPEDDILGKLPKKMRPD 318 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 A +E+ RG+ + + ++ +R R R ++ ++ G ++D +I S Sbjct: 319 GEAYARIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADLVALIAS 378 Query: 514 LDPCYSCTDR 523 D DR Sbjct: 379 FDVVAPEIDR 388 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 171/397 (43%), Gaps = 48/397 (12%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + E + + +GP H + +L ++GE +V A+ ++H G+EK AE + +N Sbjct: 9 LEEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HLTWN 67 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLG 291 + T + DR+ + +++ Y +VE LGIE +P++A R ILLE+ R+ SHL+ LG Sbjct: 68 QATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLG 127 Query: 292 LSCHFVG-FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 G T F +R++ + + E G R +GG+ D+ + Sbjct: 128 TGGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDF 187 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP 394 ++ + EL +++L P R +G+ ++ + A D+R +P Sbjct: 188 LKVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYP 247 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--------DTPLLTE 446 Y Y N + +T GD +SRV + E F+SL ++ ALDN+P D L+ Sbjct: 248 YLGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKLVLP 307 Query: 447 GFSYK--------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 P +E+PRGE + + K R R R Sbjct: 308 PKQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRVRP 367 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ L +L G+ +SD I ++DP + DR Sbjct: 368 PSFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 363 bits (933), Expect = 7e-99, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 163/372 (43%), Gaps = 20/372 (5%) Query: 171 YPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRM 230 + + N++ I +GP H ++ L +DGE IV+ Y+HRGMEK AE+ M Sbjct: 9 FRLERKSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAES-M 67 Query: 231 GYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 Y + +SDR + +++ ++E + + VP R IR +L E+ R+ SHL+ Sbjct: 68 SYLQYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLVFY 127 Query: 291 GLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 G +G T + F+ RE + E + GSR T GG R D+ + Sbjct: 128 GCFGGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAF 187 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP 394 + M + + L + +R+ GIG+L ++ A D+R +P Sbjct: 188 LDHMEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANP 247 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYK-P 452 Y+ Y + + F GD + R +R+ E +S+ +L ++ P + P ++ + P Sbjct: 248 YSIYDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGPWRSKEKPVRLP 307 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 +E +G + + K +R R ++ + + M +G+ +SD I+ Sbjct: 308 VGRYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLVTIM 367 Query: 512 GSLDPCYSCTDR 523 +LDP DR Sbjct: 368 ATLDPVIPEIDR 379 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 363 bits (932), Expect = 1e-98, Method: Composition-based stats. Identities = 117/386 (30%), Positives = 185/386 (47%), Gaps = 49/386 (12%) Query: 183 VIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + VGP H S GH R+FV +G+ I D D + YVHR +EKL+E R Y + L + Sbjct: 29 ELNVGPQHPGS---GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENR-NYMHLIPLVE 84 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R + ++ Y +VE LG++VP+RA +RS EV R+ SHL LG+ F+G Sbjct: 85 RPAILDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSIFLGHS 144 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 TGFM F RE +T+ E L G+R T + GGVRRDI +E + TLK + R + + Sbjct: 145 TGFMWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLED 204 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 ++ P++ R + +G++ ++ A D+R PY Y + Sbjct: 205 WKKIFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFE 264 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY-------------- 450 + + GD +R +VR++E S+ +LE + N+P+ +L++ F Sbjct: 265 IPVYKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPTRLKKYWETY 324 Query: 451 -------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 P A+ VEA RGE V++ + + K +R R +Y + V + Sbjct: 325 RRIVLPGYYASFRPPKGEAISRVEAGRGELVYYVVSDGSPKPYRLRMITPSYRSIYVFKE 384 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +G+ +D I GSLD DR Sbjct: 385 LCKGSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 362 bits (930), Expect = 2e-98, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 159/387 (41%), Gaps = 42/387 (10%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +D ++ +GP H ++ L DGE + + L Y+HR EK+ E + Sbjct: 16 RTDEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENLTP-RQWIP 74 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ + ++ + +VE LG ++ ++A +R I+ E+ R+ SHL+ +G + Sbjct: 75 YTDRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVGMGAYGLDL 134 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G + F+ FR REK + + E G+R TY GG D+ K + + +++ Sbjct: 135 GTFSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEEFLKQFEPV 194 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP---YADY 398 + E +L +RT IGI+ ++A DLR D Y Sbjct: 195 IQEYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDGEERYTEMY 254 Query: 399 GNIPKTLFTFTG------------------GDVFSRVMVRVKETFDSLAMLEFALDNMP- 439 + GD + R VR+ E S+ ++ A++ Sbjct: 255 DGYAFEVIVSRNGHYPADHDYPPVPKEAVLGDCWHRFYVRMLEVVQSIDLVRQAIERYST 314 Query: 440 ---DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 D + + P A E PRG+ + + N +R R R++++ N + Sbjct: 315 ASGDWGQPIKLTTKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARSSSFCNLSITA 374 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + RG ++D P I+GSLD DR Sbjct: 375 DLCRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 89/417 (21%), Positives = 162/417 (38%), Gaps = 47/417 (11%) Query: 149 HPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQI 208 HP + + PT+ +D ++ +GP H ++ L DGE + Sbjct: 7 HPCWHQRNEAVMEMAPTSGIVEID----VRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVV 62 Query: 209 VDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQ 268 +A + Y+HR EK+ E + +DR+ + G ++ + +VE + ++P+ Sbjct: 63 SEATPHIGYLHRCAEKIGENLTP-RQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPE 121 Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYG 328 +A +R I+ E+ R+ SHL+ +G +G + F+ FR RE+ + + E G+R TY Sbjct: 122 KARHLRVIIAELNRIASHLVGMGTYGLDLGSFSPFLYAFRERERILDLLEDACGARLTYS 181 Query: 329 LNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA-- 386 GG D+ + + + + + +L +RT IG++ ++A Sbjct: 182 YLTPGGATADLPPGWLQKLTGFLDQFEPVILDYHALLTNNAIFIKRTANIGVMSAEMAID 241 Query: 387 --------------RDLRFDHP---YADYGNIPKTLFTFTG------------------G 411 DLR D + Y + G Sbjct: 242 YGCSGPVLRGSGVDYDLRRDGEERYTSLYAGYAFEVIVEKNGSYPRDHEYPPVPSDAVLG 301 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMP----DTPLLTEGFSYKPHAFALGFVEAPRGED 467 D + R VR+ E ++ +L ++ D + + P A E PRG+ Sbjct: 302 DCWHRFYVRMLEVIQAIDLLRQGIEKYSQATGDWGTPIKLATKLPKGEAYLETECPRGQM 361 Query: 468 VHWSMLGDNQK-LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + R R R++ + N V + R ++D P IIGSLD DR Sbjct: 362 GFYIVSDGSGSIPLRARARSSCFCNLSVAPELCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 123/358 (34%), Positives = 183/358 (51%), Gaps = 17/358 (4%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 ++P G H+ EP F E I D + YVHRG+EK A TR Y ++ +L R Sbjct: 5 IIVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVAR 64 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 VCG+C H+ AYT+ +E LGIE ++ +R +++E++R+HSH+L G VG++ Sbjct: 65 VCGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGYEN 124 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 FMQ FR RE M + E + G+R Y +IGGV RD KE + + ++A+ +L Sbjct: 125 LFMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTEKL 184 Query: 362 VEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 +E +T+G+G + +++A D R ++ Y + + L Sbjct: 185 IEFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVGYKL 244 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRG 465 T T GDV++R MVR E +S+ M LD +P+ + +P VEAPRG Sbjct: 245 QTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVK-VKGRPDGETFVRVEAPRG 303 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 E ++ + L R R R TYAN PVL+ + G SDA I+ S DPC SCT R Sbjct: 304 ECFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSCTAR 361 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 133/534 (24%), Positives = 200/534 (37%), Gaps = 64/534 (11%) Query: 48 VVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSV 107 V+ + +D ++ L+ +G + V A F S+ Sbjct: 36 VLAFFGIPDMDAPLDAHNDDTPEQPRAVSLCCILAHDGTRRLMARCTPPVTA----FVSM 91 Query: 108 TPRVPAAVWGEREIRDMYGLIPVGLPDQ---RRLVLPDD---------WPEDMHPLRKDA 155 TP +P + EREI + +G+ PVG P RR+ + P ++ A Sbjct: 92 TPELPQLHYFEREIYEQWGVEPVGHPWLKSVRRIPDSAEAAARNAAESQTSSAAPAQESA 151 Query: 156 ---MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 L + YPF +D + VGP+H EPGHFR GE ++ + Sbjct: 152 EVVPSPALTASARPQTLPYPFYRVEGADVHEVAVGPVHAGIIEPGHFRFQCYGENVLHLE 211 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 L Y HRG+E + T+ L + G AH+ A+ +E G + +RA Sbjct: 212 IALGYQHRGLEAMI-TQGPAGRRLHLLECAAGDSTVAHATAHCVLLERMTGQQPDERAQL 270 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 +R I LE+ERL +H +LG GF R+R + + L G+R GL Sbjct: 271 LRRIGLELERLANHTGDLGAIAGDTGFLPTASWNGRIRGDFLNITASLCGNRFGRGLLRP 330 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GGV D+ + L VR D V+++L + R G+++ AR Sbjct: 331 GGVAYDLAPSECADMLARVRAAWHDARGSVDVMLDAVTVRNRLADTGMVEPATARELGLV 390 Query: 388 -----------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D RF P +D GDV +R +VR +E DSL +LEF L Sbjct: 391 GVAARACGLDVDARFHMPLSDLPCEGCAPRLEITGDVMARTLVRSRELDDSLRLLEFDLA 450 Query: 437 NMPDTPLLTEGFS----------------------------YKPHAFALGFVEAPRGEDV 468 + P + P A+ VE RGE Sbjct: 451 RLGALPHTKNAATAESTVSAPATAAATNTSGTAAEAASFDALPPDTLAVALVEGWRGEVC 510 Query: 469 HWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 H + +L ++ ++ NW L LRGN +SD PL S + Y D Sbjct: 511 HVGLTDSRGRLLVYKVVDPSFHNWAGLAMALRGNQISDFPLCNKSFNLSYCGHD 564 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 358 bits (918), Expect = 4e-97, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 168/394 (42%), Gaps = 45/394 (11%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 NE S+ V+ +GP H + L +DGE+I++A+ + Y+HR EK+AE R Y Sbjct: 19 RHNEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHRAFEKIAENRPFY 78 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 ++T L+DR+ +++ + ++E LGIEVP+RA +R I++E+ R+ H++ + Sbjct: 79 -QITPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMELARITDHIICNSI 137 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 G TGF+ F+ REK + E + G+R T + IGG RD E + K + Sbjct: 138 LGVDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWSPEAFRKLDKFLE 197 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 E E + RT +G + + A D+R HPY+ Sbjct: 198 EFPPAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAGVDYDVRVAHPYS 257 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT-PLLTEGFSY----- 450 Y + + GD + R VR E ++SL+++ AL+ MP E Y Sbjct: 258 SYEDFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEYHAEVPDYYLPPK 317 Query: 451 ----------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P + VE GE + ++ +R R Sbjct: 318 EDVYNSMESLIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGSRTPYRLHFRRPC 377 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + M++G +SDA +I+ SL+ D Sbjct: 378 FIYYQAFPEMIKGALLSDAIIILSSLNVIAGELD 411 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 88/416 (21%), Positives = 151/416 (36%), Gaps = 44/416 (10%) Query: 150 PLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 P A + + S + +GP H + +DGE I Sbjct: 16 PGSFGAGEPPRALGQAGLAAENELDAPLASKLMTVNLGPSHPAMHGVTRAVVELDGEMIR 75 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 + ++HRG EK E + + + +DR+ + ++V + +VE ++VP+R Sbjct: 76 SMKLDIGFLHRGFEKSCEN-VTWTQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDVPER 134 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 A +R + E+ R+ HL +G +G T F+ R+ L G+R T Sbjct: 135 AKYLRVVTSEIHRICDHLTLVGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLTSNY 194 Query: 330 NLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA--- 386 IGGV RD +T K + ++ V E+ +++ RT+G G++ R A Sbjct: 195 GRIGGVARDTPDGWIEKTEKTLDRVKGYVDEIDQLVSRNRIFIDRTRGTGVVPRADAIEL 254 Query: 387 -------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 DLR PY Y I + T GD F R +R++E S ++ Sbjct: 255 GFTGPCLRASGEPYDLRKAAPYLVYDRIDFDIPVGTNGDNFDRFQMRMEEMRQSDRIIRQ 314 Query: 434 ALDNMPDTPLLTEGFSY---------------------------KPHAFALGFVEAPRGE 466 M + + F Y P A G+ EA GE Sbjct: 315 CFAQMEPGEIAVQDFRYVLPPKPLVYGTIEGLMAHFKIIMEGIQVPAGEAYGYTEAANGE 374 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + + ++ RA + L +M G+ +SD S++ + Sbjct: 375 LGFYVVSDGGGRPYKLGLRAPGWPMLAALPFMSVGSLLSDLIPTFDSINMIGGEVE 430 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 354 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 166/363 (45%), Gaps = 24/363 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + GP H ++V+G+ +V A ++HRG EKL E R+ Y + L R+C Sbjct: 6 LFFGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLA-LIPRIC 64 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + + Y +VE I+VP+RA IR I+LE+ R+ +HL + +G TG Sbjct: 65 VPEPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIGLYTGS 124 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 R++ + + E L G+R + + GGVR+D+ + L+ + + + + + + Sbjct: 125 FWGTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRLPDYEK 184 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 ++L + R +GI LDR+ A D+R PY Y + + Sbjct: 185 LILKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPF 244 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------YKPHAFALGFVE 461 T GD F+RV ++ +E F S+ +++ AL+ MP + T P A +E Sbjct: 245 STDGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQAYVHIE 304 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWP-VLRYMLRGNTVSDAPLIIGSLDPCYSC 520 + RGE ++ + +K +R R A+Y + L G + D P+ + ++D C Sbjct: 305 STRGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMDVCAPE 364 Query: 521 TDR 523 DR Sbjct: 365 VDR 367 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 351 bits (902), Expect = 3e-95, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 159/392 (40%), Gaps = 44/392 (11%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 + + ++ +GP H + +DGE++ AD Y+HRG EK +E Y++ Sbjct: 13 QTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHT-YHK 71 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 + +DR+ ++ AY VE LGIE+ R +R++L E R+ H+ + + Sbjct: 72 IIPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATV 131 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +G T F+ +R+ L G+R TY +GG++ D+ + ++++ Sbjct: 132 MEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDGWLERLEEILQFT 191 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADY 398 + +L RT+ +G + + A D+R D+PY Y Sbjct: 192 EKYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAKIDIRKDNPYLAY 251 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------- 451 ++ + GD + R VR++E +S++M+ + +PD P+ + Sbjct: 252 ADLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNIDDRRIMYPTKDKV 311 Query: 452 --------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 P EAP GE + + + + ++ R+ ++A+ Sbjct: 312 YTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRPYKLHVRSPSFAH 371 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +L G V+D GS++ DR Sbjct: 372 MGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 171/365 (46%), Gaps = 24/365 (6%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 V+ +GP H ++ R+ +DGE++ A+ + Y+HRG EKL E R Y ++ L++R Sbjct: 31 MVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEAR-DYRQIIMLANR 89 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + F++ + +VE LG+EVP+RA R++L E+ R+ +HL+ LG +G T Sbjct: 90 HDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLELGGIT 149 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 FR RE+ + E + G R Y N +GG++ D+ + V +R+ + Sbjct: 150 PVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRSRMDVY 209 Query: 362 VEMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNI--PK 403 ++L RT+ +G+L IAR DLR D PY YG + Sbjct: 210 ENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGELRDTL 269 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM---PDTPL--LTEGFSYKPHAFALG 458 + T T GD +R +++T +SL + + LD M P+ P Sbjct: 270 KVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQRLPKVLKAPEGHTYA 329 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 + E P G + ++ + + +R + R+A++ N L +L G V+D I+GSL Sbjct: 330 WTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLVADMVAILGSLFFVV 389 Query: 519 SCTDR 523 D+ Sbjct: 390 GDIDK 394 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 350 bits (898), Expect = 1e-94, Method: Composition-based stats. Identities = 112/357 (31%), Positives = 182/357 (50%), Gaps = 19/357 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDG-EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 I +GP + +EP +F+L VD E + D + +VHRG+E L + + + L++R+ Sbjct: 4 INIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLI-LTERL 62 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 C +C H +Y ++E IEV +RA +R I EV+R+ S++ NL + H V Sbjct: 63 CALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYEL 122 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 RE + E + G+R IGGV+ ++ K++ L + ++ V +L Sbjct: 123 MRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDKLF 182 Query: 363 EMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLF 406 E + +++ T+GIG+L +Q A D+R PYA Y + + Sbjct: 183 ERFCNSEKIKK-TKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEVRVD 241 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV+SR+ VR + +++ +L+ A++N+P P+ E + P A EAPRGE Sbjct: 242 LESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAPRGE 301 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++ QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 302 LIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 112/394 (28%), Positives = 176/394 (44%), Gaps = 48/394 (12%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMG 231 + EG+ + +GP H +S GH R V G+ IV D + YVHR MEKLAE R Sbjct: 15 LREGDESVYELFIGPQHPSS---GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREA 71 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 + L +R+ I +V ++E L +E P RA +R++L E+ R+ SHL +G Sbjct: 72 I-KAIPLLERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMG 130 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 ++ + T FM F RE + +AE L G+R T+ ++ GGVRRD+ + + K Sbjct: 131 IAGIMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAA 190 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPY 395 R M + + + + L P + R +G+G+L + A D R Y Sbjct: 191 RYMERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDY 250 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF------- 448 Y ++ + T GD +R++VRV+E S++++ L MPD P+L+E + Sbjct: 251 GAYKDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPPK 310 Query: 449 -------------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 P A+ E GE + + K +R R ++ Sbjct: 311 TRERVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIFYHITGDGSAKPYRLRVVTPSF 370 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 N + RY+ G+ D P I GSLD DR Sbjct: 371 RNVILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 173/372 (46%), Gaps = 26/372 (6%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 N I VGP+H ++ + VDG+ I + + ++HRG+EKL E RM Y + Sbjct: 19 KSENMPVMRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM-YMQ 77 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 ++++ + Y ++VE AL EV + A R I++E +R+ SHL +G C Sbjct: 78 SPSYTEKLDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFIGALC 137 Query: 295 HFVG-FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 + +G T FM FR R+ + E + GSR Y +GG+ R + + + KL Sbjct: 138 NDIGQMFTMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYKLTEY 197 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 + V +++ +RT+GIG + ++ A D+R ++PY Sbjct: 198 IEYKVKGYKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEYPYYA 257 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP------DTPLLTEGFSYK 451 Y + + T GD ++R +R +E F+S+ ++ ALD MP P+ G K Sbjct: 258 YDRLKFKVPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIGPEAK 317 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P + E PRGE + + + QK +R R R+ + + L ++ +G +D I Sbjct: 318 PD-IVINHHELPRGEGIIYMVPD-KQKPYRIRLRSPVFISLSALEHICKGAKFADLFSIA 375 Query: 512 GSLDPCYSCTDR 523 G+LD + DR Sbjct: 376 GTLDVVMAEVDR 387 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 349 bits (896), Expect = 2e-94, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 44/396 (11%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 + ++ + + +GP H + L +DGE+I+ ++ + Y+HR EK++E R Sbjct: 25 QHDAKDQIDGQLYTLNLGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISERR 84 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 + ++T L+DR+ +++ + +VE +G EVP+R +R I++E+ R+ H++ Sbjct: 85 -NFTQITTLTDRMNYCSAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVC 143 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 G+ G TG F+ REK M E + G+R T + IGG RD + Sbjct: 144 NGVIAMDAGAITGLTYLFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQT 203 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH 393 ++ SE + RT +G + + A D+R Sbjct: 204 WLKRFPKIWSEFCALNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVAS 263 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY--- 450 PY+ Y + + + GD + R MVR +E ++SL ++ A N+PD P + + Sbjct: 264 PYSSYNDFDFIIPVGSAGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEFYLP 323 Query: 451 ------------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 P VE GE + + + +R R Sbjct: 324 EKADVYNNMEALIYHFKIVMGETDVPIGEVYNCVEGGNGELGFYLVSDGGRTPYRLHFRR 383 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + M++G +SDA + + S++ D Sbjct: 384 PCFIYYQAYPEMIKGGMISDAVVTMCSMNVIAGELD 419 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 97/379 (25%), Positives = 159/379 (41%), Gaps = 24/379 (6%) Query: 168 SETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAE 227 E Y + S + GP H + ++ + G+++V Y+HRG EK+ E Sbjct: 3 PENYQPVEHPASHEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIME 62 Query: 228 TRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHL 287 R+ V L R+C Y +VE G+EVP+RA IR ++LE+ R+ +HL Sbjct: 63 ERLWIQNVA-LVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHL 121 Query: 288 LNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT 347 G + G + R+ + + E L G+R GGVRRDI + Sbjct: 122 FIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRL 181 Query: 348 LKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRF 391 +++ + A + E ++ P +R +GIG + ++ A D+R Sbjct: 182 GQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRR 241 Query: 392 DHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD--TPLLTEGFS 449 + PY Y + + T TGGDV R+ VR E +S +L + +P P+ + Sbjct: 242 NDPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLPN 301 Query: 450 Y----KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTV 504 P A EA +GE +++ K +R R + + VL + G + Sbjct: 302 PLAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGARI 361 Query: 505 SDAPLIIGSLDPCYSCTDR 523 D +I+ SLD C DR Sbjct: 362 EDIAMIMFSLDACPPEVDR 380 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats. Identities = 106/362 (29%), Positives = 169/362 (46%), Gaps = 21/362 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 V+ +GP H ++ RL +DGE++V A+ + Y+HRG EKL E R Y ++ L++R Sbjct: 28 MVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVR-DYRQIIVLANR 86 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + FA+ + +VE LG+EVP+RA +R L E+ R+ +HL+ LG +G T Sbjct: 87 HDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAIT 146 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 FR RE T E + G R Y N +GG++ ++ + + E+R + +L Sbjct: 147 PMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVRRSLPDL 206 Query: 362 VEMLLATPNMEQRTQGIGILDRQ----------IAR------DLRFDHPYADYGNIPKTL 405 ++ RT G+G+L +AR DLR D PY Y + + Sbjct: 207 DNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYDQLDVPV 266 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFS--YKPHAFALGFVE 461 T T GD SR V + + + SL + E LD + P+ T P + E Sbjct: 267 VTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLTGPINTRLPKVLKAPEGHTYAWTE 326 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 P G + ++ + + +R + R A+YAN L +L G V D I+GS+ Sbjct: 327 NPLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLVAILGSMFFVVGDI 386 Query: 522 DR 523 D+ Sbjct: 387 DK 388 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 96/381 (25%), Positives = 162/381 (42%), Gaps = 38/381 (9%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + +I +GP H + + +DGE +VD L Y+HR EK A T + YN+ Sbjct: 26 KVEEVLINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAAT-LPYNQTIP 84 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 DR+ + A+ VE+ LG+ +P+R IR ++ E+ RL SH + +G Sbjct: 85 FVDRLDYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAIGTYGI 144 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T F+ R RE + + E G+R Y IGG+ D+ + L+ + ++ Sbjct: 145 DLGAFTSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEFITYLK 204 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + E+ ++L+ +RT +G+L A DLR Y+ Y Sbjct: 205 PKLEEINQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDGYSIYP 264 Query: 400 NIPKTLFTFTG-----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA 454 + + G GD + R V+ +E +S+ + E L + T L + P Sbjct: 265 ELSFDIPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRL--TSDLKRTADFNPQK 322 Query: 455 FA-----------LGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGN 502 E PRGE + DN K R + R+++++N V+ + +G Sbjct: 323 MVPKKVRTKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKARSSSFSNLSVISSIAKGQ 382 Query: 503 TVSDAPLIIGSLDPCYSCTDR 523 ++D IIGS+D DR Sbjct: 383 VLADLIAIIGSIDIVLGEIDR 403 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 346 bits (887), Expect = 2e-93, Method: Composition-based stats. Identities = 108/475 (22%), Positives = 197/475 (41%), Gaps = 38/475 (8%) Query: 63 LFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 L + G + + E + + ++ ++ + P+A+W ER++ Sbjct: 3 LIARYAKEREGTFEIVTVFESETQRE-------TISKENPVIRTLAKKHPSAIWFERKMS 55 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 D +G++ D+R L+ + +P+ +HP++K L T Y + Sbjct: 56 DDFGIVIEDAFDKRPLLHQERFPKAIHPMQKAFQKNTLDFAEFT---PYKYEAIQGDGVF 112 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + VGP+H EPGHF GE ++ + R FY +RG+EK+ E + E + +R+ Sbjct: 113 QVSVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKT-LLEAKPVIERI 171 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 G A+ A+ + V A G+E+P + LLE+ER+ HL +LG + GF Sbjct: 172 SGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGAA 231 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 ++ E + + + G R + G +L + ++ D++ Sbjct: 232 LAFASKLSEDARRQLQNVTGHRFGFDAI---GFENKVLD--ISSLYDYLDGLQKDIAFFE 286 Query: 363 EMLLATPNMEQRTQGIGILDRQ--IARDL-------------RFDHPYADYGNIPKTLFT 407 ++ P++ R GIL + + D R P+ Y + T Sbjct: 287 TWIMDIPSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLDRRSEPF--YLEHGFEIQT 344 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 GDV +R VR++E +S+ M++ L+ DT + E F E+ GE Sbjct: 345 EQSGDVAARFKVRLQEVKNSIVMMKHFLEE-DDTHIDIEKIK---DGDYTAFAESSLGEL 400 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ + + R+ R ++ NW L M+ N ++D PLI S D Y+ D Sbjct: 401 -FMNIEIKDGVIERFFVRDPSFMNWQTLHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 344 bits (882), Expect = 7e-93, Method: Composition-based stats. Identities = 112/493 (22%), Positives = 192/493 (38%), Gaps = 46/493 (9%) Query: 47 DVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPS 106 ++++ L + L+G + AV ++ +++ V + V A+ + Sbjct: 31 ELLKQLRADM--RVVTLYGRRDVDRVAVTAV-----LQASDRSLHVSRTEVSAERG-YHE 82 Query: 107 VTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTT 166 +T A ERE+ + G G P + + R + + Sbjct: 83 MTTEHAALHCFERELHEQTGARIAGHPWLKPI--------------------RYEGQEQS 122 Query: 167 DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLA 226 ++PF + + VGP+H EPG FR GEQ+ + L Y HRG+E+ Sbjct: 123 AMSSHPFYKIEGKEVHEVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERRL 182 Query: 227 ETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSH 286 R +T L + + G AH+ A+ +++E+ G + R++ LE+ER+ H Sbjct: 183 LERDP-RSLTPLIETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAMH 241 Query: 287 LLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 L L VGF G + R+R ++ L GSR G GGVR + E Sbjct: 242 LSTLAGMAADVGFLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALPD 301 Query: 347 TLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLR 390 + ++AD+ + + L ++ R + G L AR D R Sbjct: 302 IRANLDLLQADLPIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDAR 361 Query: 391 FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF-S 449 + Y +P GD ++R +R+ E SL+ + + + Sbjct: 362 HLVEHGAYSVVPIQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRPSIGE 421 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 P A+ VE RGE VH G + ++ ++ + + NW L +RGN +SD P+ Sbjct: 422 LAPDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFPI 481 Query: 510 IIGSLDPCYSCTD 522 S D Y D Sbjct: 482 CNKSFDLSYCGND 494 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 21/369 (5%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 I +GP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++ Sbjct: 9 EIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKI 67 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC H E IEVP+RA IR+I+ E+ERLHSH+L G + +GF+T Sbjct: 68 CGICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETM 127 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADVSE 360 + F +RE M + + G R Y +IGG+ R +I + + L+ + + ++ + Sbjct: 128 AFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKK 187 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKT 404 L+E + P + R + +G+LD++ A+ D+R Y N Sbjct: 188 LLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFE 247 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFSYKPHAFALGFVEA 462 F GDVFSR+ VR E F+S+ ++ L ++P D + + K + EA Sbjct: 248 EIVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEA 307 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RG+ + L +N ++ + + R T N + +L G+ VSDA LII S DPC++CTD Sbjct: 308 QRGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTD 367 Query: 523 RVTLVDVRK 531 R+ +V K Sbjct: 368 RMIVVKENK 376 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 343 bits (881), Expect = 9e-93, Method: Composition-based stats. Identities = 100/423 (23%), Positives = 168/423 (39%), Gaps = 67/423 (15%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 S + ++D + +GP+H ++ + ++GE + D Y+H G+EK Sbjct: 37 EWSAMSADLESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGYLHTGIEKS 96 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERL 283 E R YN+ R+ + F VA+ +VE ALG+ +VP+RA IR +L+E+ R+ Sbjct: 97 MEYRT-YNQGVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRVLLMELNRI 155 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 SHL+ +G + +G T FR RE+ + + E + G R GGV D+L + Sbjct: 156 ASHLVAVGTGANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGVSNDLLDDT 215 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IAR 387 + + ++ D+ E+ ++++A P R + +G L + Sbjct: 216 IDMIREKLPLVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPCLRAGGLPL 275 Query: 388 DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----- 442 D+R PY Y + T D ++R VR +E + SL ++ LD + + Sbjct: 276 DMRKLQPYCGYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLEQSEGEPVM 335 Query: 443 ------------------------------------------LLTEGFSYKPHAFALGFV 460 L+TEGF P V Sbjct: 336 IADPKFAYPSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPP-GQVYAQV 394 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E +G + +R R +YAN M G +SD + IGS+DP + Sbjct: 395 EHAKGIQGVHLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGSIDPVFGG 454 Query: 521 TDR 523 DR Sbjct: 455 VDR 457 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 149/393 (37%), Gaps = 44/393 (11%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 D V+ +GP H + +DGE+++ D Y+HRG EK E +N Sbjct: 21 FGPSRDDTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECEDHTWHN 80 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + DR+ ++ AY + VE +GIE+ R +R++L E RL HL + S Sbjct: 81 -LIPYVDRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHLTCVAAS 139 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G T F+ VR+ L G+R TY IGG+ D+ + +++R+ Sbjct: 140 LMELGAMTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRLGEILRD 199 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 + ++ R + +G ++ A RDLR D PY Sbjct: 200 YEQYAERVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRKDTPYLA 259 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--------- 448 Y + + GD + R VR++E +S+ M+ +D +PD P+ + Sbjct: 260 YAELDFDVPVGIFGDNYDRYYVRMREMDESVYMIRQLMDMIPDGPINVDDRRCVFPEKQL 319 Query: 449 ------------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 P A E GE + + ++ R+ ++ Sbjct: 320 VYSEIESLINHFKLVMEGPAVPAGDAYVAHEGANGELGFYIVSTGEGVPYKVHVRSPSFV 379 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + ML G ++D GS++ DR Sbjct: 380 HMGGAHRMLDGYQLADIVTSFGSINMIGGECDR 412 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 343 bits (879), Expect = 2e-92, Method: Composition-based stats. Identities = 101/387 (26%), Positives = 152/387 (39%), Gaps = 27/387 (6%) Query: 160 LRPEPTTDSETYPFINEGNSD--ARVIPVGPLHITSDEPGHFRLF--VDGEQIVDADYRL 215 E +P + D + VGP H S GH R+ VDG+ IV D Sbjct: 2 TSQVNPKSKEIFPGLQLEKVDDRIMTLNVGPQHPGS---GHMRIILKVDGDYIVHCDPDP 58 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 YVHRG EK+AE R + L +R Y VE LG+EVP+RA IR Sbjct: 59 GYVHRGEEKMAEYRNYITNIPHL-ERPVIHDSCNILYPYCLGVEELLGLEVPERAKYIRV 117 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 I E+ R L + F+G T FM RE + + + + G+R T+ + GGV Sbjct: 118 IAAELNRCVYTQYWLAIYGIFLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGV 177 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA--------- 386 R DI L+ V + E +M P + RT+ GIL R+ A Sbjct: 178 RNDIPPNFEDVCLRQVNYFEKRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSV 237 Query: 387 -------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 D+R PY Y + GD ++R + + F+S ++ AL MP Sbjct: 238 LRASGVDFDIRKKEPYDVYEELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMP 297 Query: 440 DTPLLTEGFSYKPHA---FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 + + P VE+ RG + + +R + ++ N + Sbjct: 298 KSGSVRVKLKPNPKGGDTEVYRRVESGRGSLGMHIISRGKPQPYRLKISVGSFRNLIAMP 357 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++L G + + P + SL+ DR Sbjct: 358 HLLTGEMLGNMPAVYWSLNYWPVEADR 384 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 103/469 (21%), Positives = 186/469 (39%), Gaps = 38/469 (8%) Query: 80 ALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLV 139 S+ + V+ +V F S++ EREI + YG++P P + + Sbjct: 61 IYSVLRNDTELYVLSTMV---GTSFESLSQYNIKFQMFEREIAEQYGIVPKNHPWLKSVR 117 Query: 140 LPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHF 199 ++ K A D YPF G + + VGP+H EPGHF Sbjct: 118 YHKNY--------KGAPDVFGNNYTAPIPGNYPFYEVGGEEIHQVAVGPVHAGIIEPGHF 169 Query: 200 RLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVE 259 R GE I+ + + Y HRG+EK + + + + G +S+ ++ ++E Sbjct: 170 RFNCIGETILSLEIQHGYQHRGIEKQILN-CKKEVLPLIIESIAGDTVIGNSICFSEAIE 228 Query: 260 NA--LGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMA 317 E + + R +LLE+ER+ +H+ +G VG+ + R+R + M Sbjct: 229 WLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVGYIPTASYYGRIRGDFLNMF 288 Query: 318 ELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQG 377 L+ G+R G + + + +K +++ +V ++ ++L P + R Sbjct: 289 VLICGNRFGRSSVRPFGAPFKLSDDHIKELIKRFEQLKKEVIDVGNLMLDNPEVLGRFDY 348 Query: 378 IGILDRQIARDLRFDHPYADYGNIPKTL-----------------FTFTGGDVFSRVMVR 420 GI+D + A+ + P I + G V SR Sbjct: 349 TGIVDTKTAKLIGLVGPAGRASGIKYDVRKSFSKAKNIYNRGIGLVARKDGAVSSRAKTY 408 Query: 421 VKETFDSL-------AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 ET DS+ + +F +++ D E KP++F + EA RGE H + Sbjct: 409 FYETLDSIEFCIELLKVADFQINDSADKLEKIEKTVLKPNSFIITMEEAWRGELSHCIIT 468 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +N + R++ + ++ NW L ++R + D PL S + Y D Sbjct: 469 DENGNIIRYKIKDPSFHNWTALELVVRNEGIYDFPLCNKSFNLSYCGFD 517 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 184/374 (49%), Gaps = 20/374 (5%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 IP+GP+H EP +L +DGE+ VDA+ + YVHRG+EK+ E + ++ L++RV Sbjct: 7 TIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHC-HKGIHLAERV 65 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGIC + H++ + +E+ IE+P +A +R + E+ER+HSHL+ + + +T Sbjct: 66 CGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETL 125 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 M VRE M + E++ G+R G N+IGGVRRDI +E + K + ++ ++ Sbjct: 126 AMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELKNII 185 Query: 363 EMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFT 407 E+ P + R++ IGIL R P ++ Y + Sbjct: 186 EVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHSTYQELKFKPVW 245 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 GD F+R+MVR +E +S+ ++ AL++ + + EAPRGE Sbjct: 246 REEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNEAPRGEV 305 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN-TVSDAPLIIGSLDPCYSCTDRVTL 526 + + D + R R T N +YML+ TV+DA S+DPC SCT+R + Sbjct: 306 TYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVSCTERCIV 365 Query: 527 VDVRKRQSKTVPYK 540 + K +P Sbjct: 366 ---AVKDGKEIPIS 376 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 339 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 106/374 (28%), Positives = 177/374 (47%), Gaps = 19/374 (5%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E + +PVGP H EP +L V GE++VD + Y HRG+EK+ E M + + Sbjct: 21 EIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEG-MPWQKA 79 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 FL++RVCGIC AH++ + VE + R +R ++ E++R+ SHL+ + Sbjct: 80 AFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFY 139 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + +T F+ RE+ + E + G+R G N++GGVR D+ ++Q L+ + +R Sbjct: 140 SIEHETMFVWNMNTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLNNVLETLDAIR 199 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYA---------------DYGN 400 DV + P ++ R++G+G++ + R R P A Y Sbjct: 200 DDVITYRRIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQARASGVPESDMRLQEPVYPE 259 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFV 460 + GD +R++VR E S+ ++E +D +P+ E V Sbjct: 260 LGFKPVYRKEGDNLARILVRYDECLQSIELIERIVDELPEGRHRREL--EVNAGHVDNRV 317 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT-VSDAPLIIGSLDPCYS 519 EAPRGE V+ L + R R + N VL + G+ ++DA SLDPC + Sbjct: 318 EAPRGELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAPGSPSIADAVATYASLDPCVA 377 Query: 520 CTDRVTLVDVRKRQ 533 C +R ++D R+ + Sbjct: 378 CNERFVVIDEREGK 391 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 148/372 (39%), Gaps = 26/372 (6%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMG 231 + + + + VGP H S GH R+ V DG+ IV D YVHRG EK+AE R Sbjct: 11 LKKVDERIMTLNVGPQHPGS---GHMRIVVQIDGDYIVACDPDPGYVHRGEEKMAEYRNY 67 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 V L +R Y E LGIEVP+RA +R I E+ R + L Sbjct: 68 ITNVPHL-ERPVIHDSCNVLYPYVLGAEEILGIEVPERAKYVRVICSELNRCIYTMYWLA 126 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 + F+G T FM RE + + E + G+R T+ + GGVR D+ L+ V Sbjct: 127 IYGIFLGHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANFEDVCLRQV 186 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPY 395 + E + P + RTQ G+L R+ A DLR PY Sbjct: 187 NYFEKRIKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDYDLRVKAPY 246 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAF 455 Y + GD ++R V + +S ++ AL MP + + P Sbjct: 247 DVYDELDVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTKLKPNPKTK 306 Query: 456 A----LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 VE+ RG + + + +R + ++ N + +L G + + P + Sbjct: 307 GPATVYKRVESGRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIGEKLGNMPSVY 366 Query: 512 GSLDPCYSCTDR 523 SL+ DR Sbjct: 367 WSLNYWPVEADR 378 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 165/365 (45%), Gaps = 24/365 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRL--FVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + GP H + GHFR+ +DG+ V A+ + Y HRG+EKL E R + Sbjct: 3 EGLVTLNWGPQHPVT---GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIP 59 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + +R S++YT +VE+ + E P RA +R+I+ E+ RL SHL NL L Sbjct: 60 MI-ERFNMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVA 118 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G T FM RE + + E+L G R Y + GGV +D+ + Q K ++ R Sbjct: 119 LGMYTPFMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRN 178 Query: 357 D-VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + + + + T ++ R + +GI+ ++ A +D+R PY Y Sbjct: 179 RLLKDYKKFIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYN 238 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + + T GD +R++VR +E SL +LE + ++P T+ P Sbjct: 239 EVDFDVITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTR 298 Query: 460 VEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 VEA RGE + + +R + ++ N VL + G+ ++D I S+D Sbjct: 299 VEAARGEVGVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSIDVWA 358 Query: 519 SCTDR 523 DR Sbjct: 359 LEMDR 363 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 331 bits (850), Expect = 4e-89, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 162/365 (44%), Gaps = 26/365 (7%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + +GP H ++VDG+ IV A +HRG EKL E R+ N + L R+C Sbjct: 6 LYLGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLA-LIPRIC 64 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + + Y ++E GIEVP++AH IR I+LE+ R+ +HL++LG VG TG Sbjct: 65 VPEPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVGLYTGP 124 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 R+ + + E + G+R + + GGVR+D+ +E + + + + E + Sbjct: 125 NWGLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRLPEYED 184 Query: 364 MLLATPNMEQRTQGIGILDRQI-----------------ARDLRFDHPYADYGNIPKTLF 406 ++L ++RT+ +L ++ A D+R PYA Y + + Sbjct: 185 LILKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQVEFYVP 244 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-------YKPHAFALGF 459 T D ++RV + ET+ S+ ++ L+ MP + S P Sbjct: 245 TANYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKGQVYTH 304 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTVSDAPLIIGSLDPCY 518 VE RGE ++ + K +R R A+Y + L G + DA L + ++ C Sbjct: 305 VECARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKYLPGTRIEDAALWMDTMGVCP 364 Query: 519 SCTDR 523 DR Sbjct: 365 PEIDR 369 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 180/365 (49%), Gaps = 22/365 (6%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 I +G +H + EP R FV+ E I DA+ + HRG+E++ E + + L++ Sbjct: 13 ETEIQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG-LPVEKANMLTE 71 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 ++CGIC +H+ + E LG+EVP RA IR I+ E+ERLHSHLL LG C + + Sbjct: 72 KICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGHGCETLAHE 131 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADV 358 T M+ F +RE M + ++ G+R YG ++IGGV R ++ + + L + + +V Sbjct: 132 TFSMRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQRILDGMDLVEKNV 191 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + + + R G G + ++ A RDLR D +Y N Sbjct: 192 LDFANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRTDM--YEYDNFD 249 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEA 462 + T DV +++++RV E F+++ ++ A+ ++P+ + + ++E Sbjct: 250 YDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEMIDTDLIESYIEV 309 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 PRG H + ++ ++ R + +N ++Y N ++D L I DPC++C+D Sbjct: 310 PRGTLYHSYAI-EDGRVRHCIIRTPSMSNIGAMQYACIDNHITDGQLCIVQCDPCFTCSD 368 Query: 523 RVTLV 527 R V Sbjct: 369 RAIEV 373 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 182/363 (50%), Gaps = 18/363 (4%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 I +G +H + EP RLFV+ E + DA+ + HRG+E++ E + + L++ Sbjct: 20 ETEINMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRGIERIMEG-LPVEKANALTE 78 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 +VCGIC H E ALGIE+P+RA +R + E+ERLHSH+L LG + + Sbjct: 79 KVCGICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGHGSEVLCHE 138 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADV 358 T M+ F +RE M + ++ G+R YG++++GGV R D+ +++ + L + + V Sbjct: 139 TFAMRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADLNLKEQQRVLDTMDYIDEKV 198 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYA--------------DYGNIPKT 404 ++ E +A P + R G G L ++ A DL P +Y Sbjct: 199 ADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRATGYEYDFRTEMFEYEPFEFD 258 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 + T GGDV + +++R E F+S ++ + N+P P++T + ++E PR Sbjct: 259 IITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVTRDWDLVDSPVYKSYIEVPR 318 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRV 524 G H L ++ K+ R + +N ++ G+ + DA L I S DPC++CTDR Sbjct: 319 GVCYHSYGL-EDGKVRHSIIRTPSMSNIGAMQESCIGHPIQDAQLAIVSCDPCFTCTDRA 377 Query: 525 TLV 527 + Sbjct: 378 IQI 380 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 159/391 (40%), Gaps = 49/391 (12%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 SD ++ +GP H S GH R+ + G+ IV+A YVHR +EKLAETR+ + + Sbjct: 38 KSDEYLVLIGPAHPGS---GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLAETRLFVHNI 94 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L +R Y ++E ++VP RA +R I+ E+ R+ HL + G+ Sbjct: 95 P-LVERPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDHLYDTGILAV 153 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 F+G TG+M F +RE + + G+R T + GVR D+ + + + Sbjct: 154 FLGHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRYIYNMTFFIE 213 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 + EL + P R + +G+L + + D R PYA Y Sbjct: 214 KKIDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNRRARPYAVYD 273 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-------- 451 + + GD +SR +VRV+E SL ++ A+ N+P+ P++ + Sbjct: 274 QLEWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMTRVPPKEREK 333 Query: 452 ------------------PHAFALGFVEAPRGEDVHWSMLGDNQK-LFRWRCRAATYANW 492 P A EA RG ++ + +R R ++ N Sbjct: 334 VAKDIRNYLFRLLIGLTLPEGEATTLTEAARGTLLYSLVSDGKSNVPYRLRMITPSWYNL 393 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 LRG + D P I GS DR Sbjct: 394 KPFMESLRGYRLMDLPAIYGSWGYFPPEADR 424 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 324 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 153/399 (38%), Gaps = 57/399 (14%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 A + GP H + L ++GE + D + +HRG EKL ET+ Y + D Sbjct: 3 AICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPYFD 61 Query: 241 RVCGICGFAHSVAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 R+ + AY ++E L +R++ E+ R+ +H+L + +G Sbjct: 62 RLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGS 121 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL-QTLKLVREMRADV 358 + F REK M E + G R V + L + L L+ + Sbjct: 122 MSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLTTL 181 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFD--HPYADYGN 400 SE+ +L +QR IG + + I RDLR D YA+Y Sbjct: 182 SEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYY 241 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM--------PDTPL--------- 443 + +T GD + R ++R+ E +S+ ++ A+ + P + L Sbjct: 242 LNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKKFI 301 Query: 444 -------------LTEGFSYKPHAF------ALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 L F Y F VE+P+GE + + K +R + Sbjct: 302 SQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRCKV 361 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R+ Y + VL M +G+ ++D +IG++D + DR Sbjct: 362 RSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 173/376 (46%), Gaps = 29/376 (7%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + + +GP H + F+L +DGE+++D D ++HRG EK+ E R ++ Sbjct: 1 MSKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDL 60 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +S R+C + YT+++E GIE P++A +R I+ E RL SHLL + Sbjct: 61 V-MSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAG 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + RE+ + + + G R + GGVR DI + + +TLK+++ ++ Sbjct: 120 PIAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIK 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + ++ + P E+R + +G L A DLR Y YG Sbjct: 180 PLIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYG 239 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALG 458 I + + GD + R +VR++E + S+ ++ A++ MP + P + P +G Sbjct: 240 EIDFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYRYRLPATIPAGEGIG 299 Query: 459 FVEAPRGEDVHWSMLGDNQ--------KLFRWRCRAATYANW-PVLRYMLRGN--TVSDA 507 VE+ RGE + + +R + R T A+ VL++++ T++D Sbjct: 300 RVESARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADL 359 Query: 508 PLIIGSLDPCYSCTDR 523 P++IGS DPC DR Sbjct: 360 PVLIGSFDPCPPDIDR 375 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 195/452 (43%), Gaps = 31/452 (6%) Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 + V S +P+++ VPAA W ER+I D++GL P+G P L+LP + P Sbjct: 54 IDVAVPRGSTSYPALSAVVPAASWYERKIHDLFGLEPLGHPRLDPLILP---LREAQP-- 108 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 + R P T E IP GP+ E + + GE I Sbjct: 109 RPLPGQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVG 168 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 R+F HRG+E+ E + ++ L++RV GI AH++A+ ++VE+ G+ R + Sbjct: 169 IRVFAKHRGIERRFED-LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRS 227 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 +R I E+ER+ +HL G +F +E+ + + GSR G+ + Sbjct: 228 VRVIFAELERIANHLDVALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVP 287 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GG+ + L + ++ +V ++L+ TP+ R +G G LD +AR Sbjct: 288 GGIGCE-PAISPNALLTRLDDILREVFADADLLMQTPSFLDRLRGTGPLDPALARRHGAL 346 Query: 388 -----------DLRFDHPYADYGNIP-KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL 435 D R+ PY +Y ++P + GD +R+ +R E S ++ A+ Sbjct: 347 GPIGRASGFDDDDRWHRPYDEYSDLPQFPAVSSGSGDALARLEIRWSEIRSSAELIRQAV 406 Query: 436 DNMPDTPLLTEGFSYKPH------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 ++ T + P +G+ EAP+GE V+ D ++ R R+A++ Sbjct: 407 AHIAALSAPTAEPADVPAAIDRISGRGIGWAEAPQGEVVYVVECDD-GRISRCAPRSASF 465 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 N + + G+ ++D P I S + Sbjct: 466 HNLVLFHDVFAGDILTDFPFIEASFGLSIAGV 497 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 172/359 (47%), Gaps = 24/359 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H EP + GE+++ + L Y+ +G+E++ R + EV FL++RVC Sbjct: 9 IPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGR-PWQEVMFLAERVC 67 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H++ + ++E I VP RA +R ++ E++R+ SH+L C+ + +T Sbjct: 68 GICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTIEHETLA 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M +RE + E + GSR + GGVR D+L E L + ++ ++ V Sbjct: 128 MYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEEMKRYVR 187 Query: 364 MLLATPNMEQRTQGIGILDRQIAR-----------------DLRFDHPYADYGNIPKTLF 406 + P + R++GIG + R+ A DLR HP Y + T Sbjct: 188 IFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHPT--YRELGFTQI 245 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T T GD F+RVMVR +E F S+ ++ ++ +P+ P+ G A G EAPRGE Sbjct: 246 TRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGGLCKAGEASYAG--EAPRGE 303 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRY--MLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + ++ R + N + ++ +++D S DPC +C +R Sbjct: 304 LTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 23/360 (6%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 GP H L + G++IVDA + Y+HRG EKL E R + + RVC Sbjct: 33 HGPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFI-QCFPIVCRVCVP 91 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 + Y +VE GIE P+RA IR+++LE+ R++S+L+ LG G Sbjct: 92 EPDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQW 151 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 +R+ + E L G+R + L GGVR + + + + +RE+ + + ++ ++L Sbjct: 152 TTYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVL 211 Query: 366 LATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTFT 409 ++R+ G+G++D +A+D+R D PY Y + Sbjct: 212 FHNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAIVGK 271 Query: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFS----YKPHAFALGFVEAPR 464 D+++R VR ++ S+ ++ L MP + P++ + + P E R Sbjct: 272 DSDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQGETYIRGECSR 331 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE ++ + + R R +Y + +L +M+ +SD ++ SL +R Sbjct: 332 GEYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMVSLHTYPPEVER 391 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 103/388 (26%), Positives = 172/388 (44%), Gaps = 49/388 (12%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 V+ VGP H S GH RLFV DG+ I + +VHRG+EKLAE R Y + Sbjct: 27 GERGLVVVVGPQHPGS---GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENR-PYWTL 82 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L ++ + ++ T ++E ALG+E P RA +R+ + E+ R+ +HL +L L Sbjct: 83 IPLVEKASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLGI 142 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 F+G T FM F + + + + G+R T + GGVRRD+ +E KL+R+ Sbjct: 143 FLGHSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKTE 202 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + + + L P + R +G+G++D + A D+R PY Y Sbjct: 203 EKLRDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAYP 262 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-PH--AFA 456 + + T GD +RV+VR +E + S+ ++ AL N+P+ ++ + +K P Sbjct: 263 ELDFEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRREG 322 Query: 457 LGFVEAPRGEDVHWS---------------------MLGDNQKLFRWRCRAATYANWPVL 495 +G V G + Q+++R R ++ N + Sbjct: 323 MGGV---LGVYTYMYPEPGEYAAVAEAARGATYIHLWTTGTQRVYRMRYVTPSWRNLKAM 379 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +RG ++D P + S DR Sbjct: 380 AEAMRGERLADMPAVYMSFGYFPPEADR 407 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 316 bits (809), Expect = 2e-84, Method: Composition-based stats. Identities = 103/388 (26%), Positives = 151/388 (38%), Gaps = 42/388 (10%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 EG I GP H +S F + VDG+ +V+ YVHR MEKL ETR + Sbjct: 22 EGKRRILDIFWGPQHPSSGHT-RFIVEVDGDIVVNVTPDPGYVHRTMEKLGETRHWIQNI 80 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L +R+ + AY +VE ++V RA +R I+ E+ R+ +HL +LGL Sbjct: 81 P-LFERLSLPDAINVTWAYAMAVERVAKLDVSPRAQYLRVIMAELSRISTHLYDLGLHAI 139 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G TGFM F +RE + + ++ GSR T L GGVR QT + + Sbjct: 140 MIGSSTGFMWGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRTAPPDAFYEQTKGFLDYLE 199 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + E V +++ P R + +G L ++ A D R + Y Y Sbjct: 200 KKIDEFVRLVVKNPVGYYRLKDVGYLSKEDAARLMATGPGARGSGIDWDARRVYKYGIYD 259 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGF-SYKPHAFAL 457 + GD +R MVR+ E S ++ ALD +P D PL+ E P Sbjct: 260 EFEWDVCVEDAGDSLARTMVRICEIQQSAKIIRQALDRVPKDGPLVGEAVLHRIPPKQRE 319 Query: 458 GFVE----------------------APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 E RG +K +R R ++ N + Sbjct: 320 KANEIIRLGALYTTMLPQGEGVGVTEGGRGRYFFHVFGDGTEKPYRVRISTPSWQNLRAM 379 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 G + D P I GS DR Sbjct: 380 IRAFIGARLMDLPAIYGSFGYFPPEQDR 407 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 85/404 (21%), Positives = 147/404 (36%), Gaps = 60/404 (14%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + ++ GP H S F L ++GE I AD + ++HRG EKL E R + + Sbjct: 59 TQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEKLIEQRTYLKSLPYF 118 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT-IRSILLEVERLHSHLLNLGLSCHFV 297 DR+ + + AY ++EN LG +R++ E+ RL +H L + V Sbjct: 119 -DRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRLMNHFLGISTHSLDV 177 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR-DILKEQRLQTLKLVREMRA 356 G + F RE+ M E + G+R + + + + L + Sbjct: 178 GNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQFFIDLLFFLNNTYK 237 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLR--FDHPYADY 398 ++E+ +L R IG++D +DLR Y+ Y Sbjct: 238 SITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFKKDLRILKTSTYSYY 297 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM-------------------- 438 + F GD + R ++R++E +S+ ++ + N+ Sbjct: 298 WFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFESTTALPFWYNTESYV 357 Query: 439 --------------PDTPLLTEGFSYK-----PHAFALGFVEAPRGEDVHWSMLGDNQKL 479 L+T Y P VEAP+GE + + K Sbjct: 358 SATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKGEFGVSLISDGSSKP 417 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 FR + R Y + + +RG+ +D I+GS D + R Sbjct: 418 FRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVIR 461 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 300 bits (769), Expect = 8e-80, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 149/394 (37%), Gaps = 64/394 (16%) Query: 135 QRRLVLPDDWPEDMH--PLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR---VIPVGPL 189 +R +P+ + RKD + + T + PF+++ + V+ GP Sbjct: 35 SKRWGHNKWFPDRRYFEEYRKDHPIPQPLIDRDTVEKYNPFLDDEPNTEIQNVVLNFGPQ 94 Query: 190 HITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 H + L + GE++ D + +HRG EKL E + Y + DR+ + Sbjct: 95 HPAAHGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMC 153 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRV 309 + Y+ +VE L IEVP RA IR++ E+ R+ +HL+ +G VG T F FF Sbjct: 154 NEQCYSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEE 213 Query: 310 REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATP 369 REK M E + G+R GGV +D+ + + + + + ++ ++L Sbjct: 214 REKLMEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNR 273 Query: 370 NMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLA 429 RTQ IG++ + A + + P Sbjct: 274 IWVDRTQNIGVISAEDALNYGYTVP----------------------------------- 298 Query: 430 MLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 P T P + + + K +R + +A + Sbjct: 299 ------------PGATYTAIEAPKGE-----------FGVYLVSDGSSKPYRCKIKAPGF 335 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 A+ L + +G ++D IIG+LD + DR Sbjct: 336 AHLAALDKIGKGLFLADIVAIIGTLDIVFGEVDR 369 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 300 bits (769), Expect = 9e-80, Method: Composition-based stats. Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 19/295 (6%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + + V+ +GP H ++ L ++GE +V+A + Y+H G+EK E R Sbjct: 31 RSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQ 90 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVERLHSHLLNLG 291 VTF++ R+ + F + AY VE LGI E+P+R + IR +++E+ R+ SHL+ L Sbjct: 91 GVTFVT-RMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALA 149 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 +G T FR RE +T+ E + G R GGV +D+ + + + Sbjct: 150 TGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEAL 209 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGIL----------------DRQIARDLRFDHPY 395 +++R + E+ E+L + RTQG+G L + DLR PY Sbjct: 210 KQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSEPY 269 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY 450 Y + + T D + R M+RVKE ++S+ ++E LD + P + Sbjct: 270 CGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKL 324 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 114/449 (25%), Positives = 186/449 (41%), Gaps = 43/449 (9%) Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 + PS+ P W ERE D G+ G P+ L+ PLR Sbjct: 53 FEVWSVPAGGTVPSIATIWPLLGWYERETADHRGIAFSGQPEPFSLIA---------PLR 103 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 D +++ +V+P GP+ E F F GE I+ Sbjct: 104 AD-----------EEADLRRLPGLSGDAVQVLPFGPVRAGVVESAEFSFFYVGEAILHYV 152 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 LF HRGME + L++RV G+ AH++AY ++E A + VP RA Sbjct: 153 PHLFLKHRGMEDRFVDQTP-ETGLVLAERVSGVGSVAHALAYAQAMEAAAQVAVPGRARY 211 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 R I+ E+ERL++HL LG + + E+ + + GSR G+ Sbjct: 212 QRVIVAELERLYNHLHYLGHLADTTTLKVAHAEGALLAERVKQIGARVTGSRFLRGVIAP 271 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------ 386 GG+RR++ + + +RA + + L A+ + R G+L R++A Sbjct: 272 GGLRREL---RVEGLAGALDALRAPIRRYIARLDASESHFDRLATTGVLPREVAFDQGAT 328 Query: 387 ----------RDLRFDHPYADYG--NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA 434 RDLR DH YA Y ++ + T T GD +R VR+ E ++L M+ A Sbjct: 329 GPVARASGLDRDLRRDHAYAAYDDPDLALAVATGTDGDAHARARVRIAEIENALLMIVRA 388 Query: 435 LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 + P + A A+G+ E+PRG ++ +G + +L R + ++ +++NW V Sbjct: 389 IALTPGGAIRVACAPAA-GAEAMGWAESPRGTLIYAVHVGPDGRLARVKIKSPSFSNWRV 447 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 Y + G + D + S + R Sbjct: 448 FPYTVHGTNMMDYAINEASFGLTIAGCAR 476 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 146/361 (40%), Gaps = 39/361 (10%) Query: 182 RVIPVGPLHITSDEPGHFRLFV-DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 RV+ +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y +V L++ Sbjct: 18 RVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQVLTLAN 76 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R + F + +A +VE G++VP RA +R++L E+ R+ +HL+ L V Sbjct: 77 RHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLVFLAPLTDPVA-- 134 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 R RE + E G R + N IGG+R D+ + + + Sbjct: 135 -----AARGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGWAERVAGALDAVE----- 184 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKT 404 P + G+G+L R A DLR D P Y + Sbjct: 185 -------VPEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYRELDVR 237 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--LLTEGFSYKPHAFALGFVEA 462 GGD +RV V + ++A+ L +P P L P VEA Sbjct: 238 PSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSVYTRVEA 297 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 P G + +R + R ++ N L +L G V+ PL++GS D Sbjct: 298 PLGVSGVHLASRGEKTPWRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAVVVGDID 357 Query: 523 R 523 R Sbjct: 358 R 358 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 152/389 (39%), Gaps = 33/389 (8%) Query: 165 TTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEK 224 D + + VGP+H EPGHFR VDGE I RL + RG+ Sbjct: 88 IRDLFYHGLKVPFSDGEYSHAVGPIHAGIIEPGHFRFIVDGEVIRHLTIRLGFQKRGIRD 147 Query: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 + N+V S+ + G +++A++ E+ I V + RSILLE+ER+ Sbjct: 148 HLLHK-AMNQVMPYSEMISGDTSVGYALAFSKIYEDLYEIPVSKEIRLFRSILLELERIA 206 Query: 285 SHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD---ILK 341 H+ +LG +G+ + R ++ + E G R + G + + K Sbjct: 207 VHIGDLGGISEDIGYYPLYGVCVTERGAALGLMEAWTGHRFGKSVVRPGRLYLNNRLNAK 266 Query: 342 EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD----------------RQI 385 + + +L + + L+ +++R QG G + + Sbjct: 267 QAKESFKQLKNAYIKKIRPQILRALSISTLKERMQGCGFISEMDVQNFGFVGMVARMAGV 326 Query: 386 ARDLRFD-HPYADYGNIP-KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 DLR + Y ++ +P K GDV++R+ +R E S+ +E ++ + + L Sbjct: 327 NEDLRIENFDYPNWNPLPLKEEHHHYNGDVWARMYIRYSEIEQSMDWIEKTMEEI-NWDL 385 Query: 444 LTEGFSYKPH----------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 L E P+ F VEA RG + +N + R + NW Sbjct: 386 LWEPKVKVPNQEILTKRTKPGFYYSAVEAWRGPLLVALQFDENGLVNNSYIRDPSVLNWH 445 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 L +RG V+D PL S + Y D Sbjct: 446 ALELAVRGEQVADFPLNNKSFNLSYVGFD 474 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 284 bits (726), Expect = 9e-75, Method: Composition-based stats. Identities = 111/457 (24%), Positives = 181/457 (39%), Gaps = 31/457 (6%) Query: 92 VVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPL 151 ++ + FP+++P PAA W ER IRD++G D R + WP L Sbjct: 65 ILPVATPIEGGRFPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAP-L 123 Query: 152 RKDAMDYRLRPEPTTDSETYPFINEGNSDARVI-----PVGPLHITSDEPGHFRLFVDGE 206 PE T PF + S I +GP+H EP RL + G Sbjct: 124 SPRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGT 183 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 I A++RL Y HRG++ L + + ++ R+ G AH +A+ + E AL +E Sbjct: 184 LIRQAEWRLGYTHRGIQWLMRGK-PLRDAIRIAARITGDAALAHGLAFARAAEAALRLEP 242 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P RA +R ++ E+ER HL L + G DT + RE+ + + G+R Sbjct: 243 PPRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMM 302 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML-----LATPNMEQRTQGIGIL 381 L + GGV D+L L+T +++ + + EL+E L+ + +G +L Sbjct: 303 IDLLIPGGVLTDLLDGTALET--VLQALARTMPELIEGYETAASLSGHGLCACLRGCAVL 360 Query: 382 DRQIARDLRFDHPYADYGNIPKTLFT--------------FTGGDVFSRVMVRVKETFDS 427 A L P P L T GD +R+ VR+ E +S Sbjct: 361 SGSDAVSLAVPGPAGRASGRPHDLRTTWQQAPHGTVHRLVLENGDADARMRVRLAEIQES 420 Query: 428 LAMLEFALDNMPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 L + L+++P P+ + G VE+ RG HW + + + Sbjct: 421 LRLALLFLESLPVGPIANPMPIGTGNASGEGYGGVESARGACWHWLRI-EGGMVVSAHAA 479 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ P + L G + + + S + D Sbjct: 480 DPSWRLIPAIEAALPGTDIDRLGVALASFALSPAGAD 516 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 148/386 (38%), Gaps = 46/386 (11%) Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 ++ GP H S + + GE + D + ++HRG E+L E N F+ DR+ Sbjct: 28 ILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVFM-DRL 86 Query: 243 CGICGFAHSVAYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + AY +VE AL + R +R+I E+ R+ +HLL++ +G Sbjct: 87 DYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGTMA 146 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI-LKEQRLQTLKLVREMRADVSE 360 F RE+ M + E + G+R L I E + L R +E Sbjct: 147 MLFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRNSEKTYTE 206 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP------------------YADYGNIP 402 + L R GIG++ +I+ P Y Y ++ Sbjct: 207 IYIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYASLT 266 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM-----------------PDTPL-- 443 +F GD F R ++R++E F+S ++ +L + P + Sbjct: 267 LRIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNNPHLKIES 326 Query: 444 LTEGFSYKPH------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 L E F Y + GFVE+ +G + + +R R+ Y + +L Sbjct: 327 LIELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYIRSPAYMHLQLLPK 386 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 + G+ ++D ++GS+D + DR Sbjct: 387 LGAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 273 bits (699), Expect = 1e-71, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 160/359 (44%), Gaps = 20/359 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRG-MEKLAETRMGYNEVTFLS 239 + + +GP H P F L + +++VD +Y+ + RG E+L R+ + L Sbjct: 2 SYSLALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLV 59 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 R+CG C FAHS+A+ ++E +V RA +R + E+ER +HL +G Sbjct: 60 ARICGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGM 119 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + ++S M L+ G R + GG+ RD+ +R + L ++ M AD+ Sbjct: 120 EQRGAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLY 179 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPK 403 ++ L+ + RT +G+L R A RD+R D PYA Y + Sbjct: 180 RFIDRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDV 239 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 GGDV++R+++ + E ++ + ++E AL +P+ + E P A VE P Sbjct: 240 QPIIQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGP 299 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RG + +L R + + + R +L + D I+ SL C +C + Sbjct: 300 RGAIRYTLESDG-VRLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAE 357 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 267 bits (682), Expect = 9e-70, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 150/359 (41%), Gaps = 20/359 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM-EKLAETRMGYNEVTFLS 239 + V+P+GP H P L V+GEQI D ++R Y +RG+ E+L TR + L Sbjct: 12 SYVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTIPQGLHLV 69 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +C AHS+ + ++E L I +RA +R + EVER HL + +G Sbjct: 70 SHICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGL 129 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 ++ + + L G+ + GGVR+D+ ++ R + + Sbjct: 130 QRDAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMY 189 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 V+ + + +R G+G+L R+ A D R D Y Y P Sbjct: 190 RFVDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQFPP 249 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 + T GDV++R+++ E F+SL + L N+P P +E+ Sbjct: 250 SRVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSVTSNIESA 309 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RG + KL R A + + R +L G + DAPLII S C +C++ Sbjct: 310 RGTLRYTVQSNG-VKLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASACTACSE 367 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 108/504 (21%), Positives = 175/504 (34%), Gaps = 44/504 (8%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 ++ D+V L + L+ V+ +G + A + Sbjct: 19 FRLQEMAWRDLVDALKHDDLP-FVGLWC-------DGTDVHALFLPDGQP-----LAATL 65 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW----PEDMHPLRK 153 + +P+++P + ER I D+YG + D R L+ D W P HP Sbjct: 66 ALEDGRYPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAG 125 Query: 154 DAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADY 213 + +P GP + P H L + +I A+ Sbjct: 126 GGQKGLIHFQPAEHMHQ--------EGDMADGWGPATGGMEPPLHVALAMQEGRIRAAET 177 Query: 214 RLFYVHRGMEKLAETRMGY-NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 Y HRGME R + LS RV AH VA+ +VE+A +V Sbjct: 178 VTGYAHRGME--LRWRNSRVEDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRL 235 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 +R LLE+ER+ HL L G +REK + A + GSR + + Sbjct: 236 LRVALLELERICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVP 295 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFD 392 GG+ + +L D L+ + P + + GIG + + + D Sbjct: 296 GGLSLRHATQMGDMCGRLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLD 355 Query: 393 HPYAD--------------YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM 438 P A Y I + G R M+ ++E +SL ML+ + Sbjct: 356 GPTARAAGWDCDGRRMMPGYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRMLDEVASRI 415 Query: 439 PDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 T + S + + G VE P G ++W L ++ + R + A + Sbjct: 416 GLTAGGSVQLSMQ-DSEGTGMVEGPWGGILYWVRL-KEGRVEQVFARNPSSAALLTFEAI 473 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTD 522 L G+ D L+ SLD + D Sbjct: 474 LPGHQPDDVALLARSLDINAAALD 497 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 257 bits (656), Expect = 1e-66, Method: Composition-based stats. Identities = 87/363 (23%), Positives = 147/363 (40%), Gaps = 29/363 (7%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 VGP+H EPGHFR V GE+I + D RL + RG+ L + + + + ++ + G Sbjct: 109 VGPIHAGVIEPGHFRFIVKGEEIRNLDIRLGFQKRGLIDLIKGKGSKDSFPY-AEAISGD 167 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 A+++A++ E A I VPQ R +LLE+ER+ +H+ ++G VG+ Sbjct: 168 STIAYAIAFSRIFEEAQKIAVPQELDFARLVLLELERIATHIGDMGAIAGDVGYYPLQGV 227 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADVSELVE 363 R + + E L G+R G G + R+ + +E+ + + +R + ADV E Sbjct: 228 CSLQRGVPLGVMEALTGNRFGRGALSPGKIVLRKGLNREKLNELAERIRSVTADVVAHFE 287 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFT-------------- 409 +R Q GI+ ++ R L F + + L + Sbjct: 288 RAANVSTNRERLQSCGIIRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPISLELN 347 Query: 410 ----GGDVFSRVMVRVKETFDSLAMLEFALDNMPD------TPLLTEGFSYKPHAFALGF 459 GD ++R +R +E +S L A+ + + ++ K Sbjct: 348 RDHMKGDAWARFYLRCEELKNSGKWLIDAIPKLEAAFSLKFGKVPSKSSVKK--GTYYSA 405 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 VE RG + L + R + NW L +RG + D PL S + Y Sbjct: 406 VEGWRGPVLVSLDLDATGSIENAYIREVSVPNWHALELAVRGEYIGDFPLNNKSFNLSYV 465 Query: 520 CTD 522 D Sbjct: 466 GVD 468 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 252 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 109/509 (21%), Positives = 178/509 (34%), Gaps = 52/509 (10%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 ++ D+V L L+ + + +AL +EG E+ + A V Sbjct: 29 FRLEEEGWRDLVATLARDPLP-FVGLWADGQD--------VHALFLEGGERVLV---ASV 76 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 + ++ PAA ER + D++G + D R + W Sbjct: 77 APYGGRYLGLSGVRPAASLPERCVHDLWGFEAMEARDTRPWLDHGVW--------TATWP 128 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDG-EQIVDADYRLF 216 RP P + P ++ +GP PGH RL + G + + A++RL Sbjct: 129 LGPRPGPVSWPPDPPEFRPQPGGGTILGIGPADGGHHTPGHLRLALGGRDTVGGAEWRLG 188 Query: 217 YVHRG-MEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 Y HRG M +L + L+ R AH A ++E A V R Sbjct: 189 YAHRGVMARLC--GLDAPAAVRLAGRAAAGASVAHQSALCRAIEAASDSMVGTGTERCRV 246 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI--- 332 +L E+ER+ +HL ++ + G + +RE M + + G R L Sbjct: 247 LLAEIERVATHLHDVARTARAAGATALAAECEYLRESVMDLCGRMFGHRLLMDLVRPEGP 306 Query: 333 ---GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR-- 387 G + V ++ +V P +E R G G+L AR Sbjct: 307 DGHAGAGDAEDGAAIAAVARQVADLVRGRMRVVGRCRDWPGLEARVVGRGVLGEHTARML 366 Query: 388 --------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEF 433 DLR P G + + GDV +R+ +R+ E S+ +LE Sbjct: 367 GVGGVAGRASAREEDLRRLVPGYRLGWLDTGV--RRAGDVAARIDLRLAEIGGSVRILES 424 Query: 434 ALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 A D PL G + +G E PRG +W + + + R A+ Sbjct: 425 AGA---DGPLPGTGTPPRRDGEGVGCAEGPRGAVWYWVRM-EGGAVRAAHVRDPALAHVA 480 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 L ++L G D +I+ S + D Sbjct: 481 ALEHVLAGADADDVAMIVRSFGLSAAAAD 509 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 239 bits (611), Expect = 2e-61, Method: Composition-based stats. Identities = 89/364 (24%), Positives = 140/364 (38%), Gaps = 22/364 (6%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + + +G LH + VD + I + + +HRG EKL E R GY ++ Sbjct: 23 KYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHRGDEKLFEAR-GYRQIPM 81 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSH---LLNLGLSC 294 L+ R F +++E+A+GI +P R IR++L E R+ SH L +G C Sbjct: 82 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 141 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 G + E + + + G+R + IGG+R E + + + + Sbjct: 142 DDAGLENAIATAI---ENARRIWQRCSGNRIHPMITRIGGLRIHPESEWQPTLGEWLDDA 198 Query: 355 RADVSELVEMLLATPNME----------QRTQGIGILDRQIARDLRFDHPYADYGNIPK- 403 A V+ L L AT + R G + R DL A Y + Sbjct: 199 NALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGVDLDTRRRTAVYDELKWP 258 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFS--YKPHAFALGF 459 + GD +SR+ + S ++ LD +P D PL T + P Sbjct: 259 EVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLETRLPTTIKAPRGRTWTT 318 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +EAP G + + +R R T+AN VL +L G V D I SL Sbjct: 319 IEAPWGRAGYLLESRGSTTPWRMALRTPTFANVQVLEAVLPGTRVDDVEATIASLGWTLG 378 Query: 520 CTDR 523 D+ Sbjct: 379 DLDK 382 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 130/353 (36%), Gaps = 23/353 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 GP E F GE I D + R K+ + + L Sbjct: 43 PGEFTFNYGPATGGLIESVAFDFHTPGELIKHVDVYPYIKTR---KIKVRGLSPEDALLL 99 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +R+ G +H+VA+ +VE+AL I+VP+ R I+LE+ER+ S+L + C G Sbjct: 100 VERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLCEPAG 159 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 F Q +RE + G R + + +GG + + L ++ +++ + Sbjct: 160 FGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFNGL-----VLESVIEDVKEEF 214 Query: 359 SELVEMLLATPNMEQRTQGIGILD-----------RQIARDLRFDHPYADYGNIPKTLFT 407 + LL + R Q G + I D R D Y + Sbjct: 215 EGIFNDLLQSKIFLNRLQNNGKISSSDMLGPAARAAGIEVDARIDEKRLPYSKLGFKPIV 274 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 F D F R VR KE S ++ A+ ++P K + VE+P+G+ Sbjct: 275 FDEPDAFGRFYVRSKEILSSADLISKAIRFSGNSP---PAKIEKTNGEGAARVESPQGDL 331 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 ++ + D K+ + + + N + + GN +D S S Sbjct: 332 FYYVKIND-GKISDVQISSPSLLNIEAFKKSMIGNIFTDYHFNWESFGIWVSE 383 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 228 bits (581), Expect = 5e-58, Method: Composition-based stats. Identities = 68/273 (24%), Positives = 107/273 (39%), Gaps = 36/273 (13%) Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 N+ E I+VP+RA IR I+LE+ R+ SHLL LG +G T F FR RE Sbjct: 8 ANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRERELVY 67 Query: 315 TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQR 374 + E G R + IGGV D+ + L V+E ++++ P +R Sbjct: 68 DLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNPIFLER 127 Query: 375 TQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVM 418 +G+GI+ + A DL Y Y + GD SR + Sbjct: 128 VEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEGDSLSRYL 187 Query: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 VR+ E + +++ AL +P P A L L D Sbjct: 188 VRIGEMMAFIKIIQQALKGIPGGPYENLEIRCFDRARDL--------------ELND--- 230 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 F +R ++ N +L +++ ++D I+ Sbjct: 231 -FEYRFI--SFINLQILPQLVKRMKLADIMTIL 260 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 223 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 1/213 (0%) Query: 164 PTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGME 223 S T + + + GP H + L + GE I+ AD + +HRG E Sbjct: 66 QAARSATAEALAPAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTE 125 Query: 224 KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERL 283 KL E + Y + DR+ + +Y ++E L + VP R IR + E+ R+ Sbjct: 126 KLLEYKT-YLQGLPYFDRLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRV 184 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 +HLL + VG T F+ F REK E + G+R G +GGV +D+ Sbjct: 185 LNHLLAITCHSMDVGALTPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGL 244 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQ 376 R+ + E+ E+L ++RT Sbjct: 245 LRDVYDWARQFGLRLDEMEELLTGNRIWKERTV 277 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 147/367 (40%), Gaps = 31/367 (8%) Query: 169 ETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAET 228 E + N GP E +F L GE I D Y R + K+ Sbjct: 32 ENTDQFADKNPGEIYFNYGPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDL-KIL-- 88 Query: 229 RMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL 288 + +R+ G ++S+ Y +VE ALGIE + + +R + LE+ER+ S++ Sbjct: 89 GDPVSRALLKVERINGFHAASNSIGYILAVEEALGIENSE-LNDMRIVELELERIRSNID 147 Query: 289 NLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 + C GF Q +RE+ + G R + +N G V D + Sbjct: 148 VIKGMCESAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVNGFGTVSGDFSTIK----- 202 Query: 349 KLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ-----IAR------DLRFDHPYAD 397 + + ++ + LL++ R Q GI+ + AR D R D D Sbjct: 203 --LNAIEKQFRDIYDGLLSSKIFLDRIQENGIVKNENSTGPAARAAGFKFDARKDSKSLD 260 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLE-FALDNMPDTPLLTEGFSYKPHAFA 456 Y N T T +G D FSR++VR +E F+++ +++ + + N+ Sbjct: 261 YRN--FTPVTESGADSFSRLVVRSEEVFEAINIIDSYGVKNI----KTRTKNELTGSGKG 314 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV-SDAPLIIGSLD 515 +E+P G+ ++ + +N KL + + +Y N + R L+ N + +D + S Sbjct: 315 SARIESPAGDIFYYVNI-ENGKLNDIQMVSPSYLNLRLFREALKNNNIFTDFFFVWESFG 373 Query: 516 PCYSCTD 522 S + Sbjct: 374 IWISELE 380 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 212 bits (540), Expect = 3e-53, Method: Composition-based stats. Identities = 76/342 (22%), Positives = 135/342 (39%), Gaps = 28/342 (8%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 GPL EP F + GE+I +Y +Y ++ + + + + +R+ G Sbjct: 48 YGPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK-IRNIKLKGINIKDAIPYIERINGN 103 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 ++++ + +SV +AL IE+P I +E+ER+ +HL L C GF+ Sbjct: 104 FAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLARMCEPAGFNVPANM 163 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 ++E+ + ++ G R +G+N LK +RL K++ + +++++ L Sbjct: 164 LMHIKERFSRIIDITFGHRYFFGVNQ--------LKSKRLDIHKMINVYKNEINDIYLNL 215 Query: 366 LATPNMEQRTQGIG-ILDRQI----------ARDLRFDHPYADYGNIPKTLFTFTGGDVF 414 L + R Q G ILD + D R+D Y + + T GD Sbjct: 216 LNSRLFTDRLQDNGRILDDDMTGPAARAAGYKYDSRYDFDIFYYNDTGYEIKTDDSGDAM 275 Query: 415 SRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 SR VR E +S+ ++E A + D+ L VE+P G+ + L Sbjct: 276 SRFNVRFNEILNSIDIIENAENKTGDSCYNI----LDGSGTGLTRVESPSGDVAFYVELS 331 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 N + + A N G +D S Sbjct: 332 -NGVIKDLKIHTALERNMKSFLKSSTGTIFTDFHFNFESFGL 372 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 210 bits (535), Expect = 1e-52, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 92/202 (45%), Gaps = 5/202 (2%) Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARV----IPVGPLHITSDEPGHFRLFVDGEQI 208 ++ P + +E +E + ++ + GP H + L ++GE+I Sbjct: 63 PGGPKHQPIKPPGSYAEPSALESEVGNGRKIRHYTVNFGPQHPAAHGVLRLILELNGEEI 122 Query: 209 VDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQ 268 V AD + +HRG EKL E + Y + DR+ + + ++ +VE L IE+P+ Sbjct: 123 VRADPHVGLLHRGTEKLIEYKT-YMQALPYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPE 181 Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYG 328 RA IR++ E+ R+ +HL+++ VG T F+ F REK M E + G+R Sbjct: 182 RAKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLMEFYERVSGARLHAA 241 Query: 329 LNLIGGVRRDILKEQRLQTLKL 350 GGV +DI + Sbjct: 242 YIRPGGVHQDIPLGLLDDIYQW 263 Score = 99.2 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 38/73 (52%) Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 P +EAP+GE + + +++ +R + RA +A+ + RG+ ++DA I Sbjct: 375 VPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKIRAPGFAHLSCFDQISRGHLLADAVAI 434 Query: 511 IGSLDPCYSCTDR 523 IG++D + DR Sbjct: 435 IGTMDLVFGEVDR 447 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 202 bits (513), Expect = 4e-50, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 149/398 (37%), Gaps = 65/398 (16%) Query: 191 ITSDEPGH--FRLFVDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 TS + GH + VD E IV Y RG+EK+ + L R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNP-ETAPVLCQRICGVCP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV---------G 298 H++A +++++L IEVP+ +R L +H +N HF+ Sbjct: 68 IPHTLASVEAIDHSLDIEVPKAGKLLRQATL-----AAHGVNSAAIHHFLIAPDFVPEED 122 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 F T VR+ + ++L G +GG+ R+I + + + ++ + D+ Sbjct: 123 FTTAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDM 182 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKT-------------- 404 + VE++ + + +G+G++D + L Y + Sbjct: 183 EKHVELMKSFIAARELPEGLGVVDAPL---LASSASYGNLDEFDYDNFSEVLPEAWYDDP 239 Query: 405 ---------LFTFTGGDVF----SRV---------------MVRVKETFDSLAMLEFALD 436 + G +V +R+ + R +E ++ + L+ Sbjct: 240 EIGKKACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLE 299 Query: 437 NMPDTPLLTEGFSYKPHA-FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 + + + + +G +E PRG +VH + + D+ K+ + T N P + Sbjct: 300 QIDTSAPARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTM 358 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 G +I + DPC SC V +VD + Sbjct: 359 GPATEGFHHKYGADVIRAYDPCLSCATHVMVVDDEDKS 396 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 155/390 (39%), Gaps = 49/390 (12%) Query: 191 ITSDEPGH--FRLFVDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 TS + GH + VD E IV Y RG+EK+ + + R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAP-ETAPVIVQRICGVCP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSH-LLNLGLSCHFVG---FDTGF 303 H++A +++++L IEVP+ +R + L ++SH + + ++ FV Sbjct: 68 IPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAI 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +R+ + + +++ G IGG+ +I + R + +++++ V E VE Sbjct: 128 NSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE 187 Query: 364 MLLATPNMEQRTQGIGI-------------------LDR-------------QIARDLRF 391 +++ + +G+G+ LDR +IA+ Sbjct: 188 LMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKRACS 247 Query: 392 DHPYADYGNIP-------KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 P D N+ F V ++ + R E +LA LD + + + Sbjct: 248 TIPLYDGRNVEVGPRARMVEFQGFKERGVVAQHVARALEMKTALARAIEILDELDTSAPV 307 Query: 445 TEGFSYKPHA-FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 F + +G +E PRG DVH + + +N K+ + T N P + G Sbjct: 308 RADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPATEGFH 366 Query: 504 VSDAPLIIGSLDPCYSCTDRVTLVDVRKRQ 533 P +I + DPC SC V +VD R Sbjct: 367 HEYGPHVIRAYDPCLSCATHVMVVDDEDRS 396 >UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=Sulfolobaceae RepID=D2PJN4_SULIS Length = 391 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 62/347 (17%), Positives = 124/347 (35%), Gaps = 22/347 (6%) Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 GP E F + +GE+I+ D + Y +R ++ + + ++ +R+ Sbjct: 51 YGPSAGGLLETIKFIITTNGEKILGIDAEV-YKNR---EIVISGLTVDDALLRVERINAP 106 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 +H++++ +VE++L +E R +E+ER+ +HL + + Sbjct: 107 FSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPTYH 166 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 + EK + + G R +G+N I GV D L+ + + + ++ + L Sbjct: 167 LLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLLRIID----ITKEFKQIFDGL 220 Query: 366 LATPNMEQRTQGIGIL-----------DRQIARDLRFDHPYADYGNIPKTLFTFTGGDVF 414 L + R Q G + + D R D Y ++ D F Sbjct: 221 LESRIFIDRLQENGKIIDENSIGPAARAAGLTYDARKDFKALPYEDLGFRTVITQEADSF 280 Query: 415 SRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 R +VR E +S +L D + ++ + L VE+P G+ ++ L Sbjct: 281 GRFLVRGMEIIESAKILVELHDEIKNSNNERGKNHKQGGGEGLARVESPSGDLAYYVKLN 340 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 N + + N + + +D S S Sbjct: 341 -NGIIDSVSLLTPSQVNLNLFLKSVINTIFTDFQFNWESFGIWVSEI 386 >UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit homolog n=3 Tax=Trypanosomatidae RepID=NDUS2_TRYBB Length = 386 Score = 190 bits (483), Expect = 1e-46, Method: Composition-based stats. Identities = 76/382 (19%), Positives = 129/382 (33%), Gaps = 46/382 (12%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 GP H + L+ GE IV D + Y+HRG EKL E + + DR Sbjct: 11 YRFTFGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYK-SVEQCLPYFDR 69 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 + + + + E L + R +R +++E R + LL + +G + Sbjct: 70 LDYVSVCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLS 129 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 + F R+K MT +L G R ++ G+ D + L L+ + Sbjct: 130 PLLWSFEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMDCY 189 Query: 362 VEMLLATPNMEQRTQGI--------------GILDRQIA--RDLRFDHPYADYGNIPKTL 405 + + R +G+ G+L R + D R Y Y Sbjct: 190 DLLFVGNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCYDY 249 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEF------------ALDNMPDTPLLTEGFSYK-- 451 GD F R+ +R+ + SL + + L + + E Sbjct: 250 CFCFIGDAFDRLFLRLFDMRMSLLICKQCFFVGFFVFGFVCLFDYLYCDITIETIIMLFY 309 Query: 452 ------PHAFALGFVEAPRGE----DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 + VE P+GE R R R A + + +L LRG Sbjct: 310 SLWCCCLPGISFACVEHPKGEYCLLLCFCV-----GLCSRLRLRCADFLHICLLDVCLRG 364 Query: 502 NTVSDAPLIIGSLDPCYSCTDR 523 + D ++G++D + DR Sbjct: 365 FLLHDLVAVLGNIDVVFGSVDR 386 >UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, scaffold_246.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1ICJ9_VITVI Length = 765 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 53/239 (22%), Positives = 92/239 (38%), Gaps = 24/239 (10%) Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + A A++++VE L EVP RA IR + E+ R+ +H L L VG T Sbjct: 51 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 110 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL------------KEQRLQTLK-- 349 + REK + E + G+R GGV +D+ + +K Sbjct: 111 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCHVTCTELVADWAFSLIKAD 170 Query: 350 ----LVREMR--ADVSELVEMLLATPNMEQRTQ----GIGILDRQIARDLRFDHPYADYG 399 L+ + R + L + ++R G L ++ D R PY + Sbjct: 171 PLAFLLSKSRSNRACPSPYPLCLGAGSAQERPVLWWYGRHGLRERVCWDSRRAAPYDVHD 230 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALG 458 + T GD + R +R++E S+ ++ + MP + + P + +LG Sbjct: 231 QSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSLG 289 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 445 TEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 TEGFS P VEAP+GE + + + + +R + RA A+ L M + + Sbjct: 688 TEGFSV-PAPSTYTAVEAPKGEIGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMP 746 Query: 505 SDAPLIIGSLDPCYSCTDR 523 +D IIG+ D DR Sbjct: 747 ADVVTIIGTQDIVSGEVDR 765 >UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (Ndufs2), putative n=1 Tax=Schistosoma mansoni RepID=C4PZT7_SCHMA Length = 538 Score = 187 bits (474), Expect = 1e-45, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 53/244 (21%) Query: 313 SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNME 372 + + L G + IG +L + ++ +++ ++L P Sbjct: 91 VLRLIMELDGEKIIRLDPHIG-----LLHRGTEKLIEY-----KTYTQISDLLFDNPIWI 140 Query: 373 QRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 RT+ +GI+ + A DLR PY Y ++ + GD + R Sbjct: 141 TRTKDVGIVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDR 200 Query: 417 VMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--------------------------- 449 +VR++E SL ++E L+ MP + + Sbjct: 201 FIVRMEEMRQSLRIMEQCLNKMPKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGY 260 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 P VEAP+GE + + K +R + +A +A+ + + RG + D Sbjct: 261 LVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVA 320 Query: 510 IIGS 513 +I S Sbjct: 321 VIVS 324 Score = 75.3 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%) Query: 169 ETYPFINEGNSDARVI--PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLA 226 + F N + + + + GP H + + +DGE+I+ D + +HRG EKL Sbjct: 62 QPIDFFNVSHQEVQSVHLNFGPQHPAAHGVLRLIMELDGEKIIRLDPHIGLLHRGTEKLI 121 Query: 227 ETRMGYN 233 E + Sbjct: 122 EYKTYTQ 128 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 184 bits (468), Expect = 6e-45, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 150/404 (37%), Gaps = 63/404 (15%) Query: 191 ITSDEPGH--FRLFVDGEQIVDADYRLFYVH-RGMEKLAETRMGYNEVTFLSDRVCGICG 247 T+ GH L VD E IV+ Y L RG E + + + R+CGIC Sbjct: 14 PTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGK-PAEFAPIAVMRICGICQ 72 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG----- 302 H +A ++ENA+ EVP +R ++ RLHSH L+ L+ F Sbjct: 73 TTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDD--FLKPDETDL 130 Query: 303 ----FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 R+R+ + +++ G +IGG+R +I + + + +R+ D Sbjct: 131 KIELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDA 190 Query: 359 SELVEMLLATPNMEQRTQGIGILD------RQIARDLRFDHPYA-------------DYG 399 EL E T +E+ + IGI D IA + YA Y Sbjct: 191 YELYEKY--TELIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYD 248 Query: 400 NIPKTLFT--------------------------FTGGDVFSRVMVRVKETFDSLAMLEF 433 + T GG + R +E ++ Sbjct: 249 DEEAKQTTTIQIPLYAGVPAEGGPRARMVKFGNFREGGSAMDINIARAQENLGAVYRALE 308 Query: 434 ALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 LD + YK F +G EAPR + H + +G + K+ +R AA+ N+P Sbjct: 309 ILDELDLNGKTRAEVEYK-DGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFP 367 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTV 537 ++ + G A +I+ + D C SC V + D ++ V Sbjct: 368 IVEKAIEGYPQQYAEVIMRAYDICASCATHVIVKDEETKEIIEV 411 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 140/360 (38%), Gaps = 33/360 (9%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF-----YVHRGMEKLAETRMGYNEVT 236 + + P+ L V+GE I D +YR Y R L + Sbjct: 3 YQLTLHPVAGAWH-SEQLTLTVEGEYIRDVEYRPATGDGAYAQR----LLQGGG--ESAV 55 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + +VC C AH++A + ++E I P RA IR I+ E+ER SH+ L Sbjct: 56 RAAAQVCPYCSVAHTLALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAA 115 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G ++ + ++ + ++ L+G GG+ + + T + + E+ Sbjct: 116 LGLNSA-TRLSQLETRIRSILLALLGH-HEAAYIRPGGLAEPPDEARLADTERAINELLP 173 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 + EL E + + R IG+L + AR D R D PYA Y Sbjct: 174 HMIELAEQTIPRRTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTV 233 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFV 460 + L GGDV +R +V + E +SL + L N+P T V Sbjct: 234 LTPALVVEQGGDVHARAVVLLIEAIESLRLAVRWLHNLPIGETYTAFTLRL--GEGTATV 291 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 EAPRG + Q+L A + + R +L+ V D LI S DPC +C Sbjct: 292 EAPRGPLRYTVRSDG-QRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 85/382 (22%), Positives = 144/382 (37%), Gaps = 54/382 (14%) Query: 195 EPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 L+ + + DA + RG EKL + V + R+CG+C +H +A Sbjct: 14 GEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVM-RICGLCHASHGIAM 72 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV----GFDTGFMQFFRVR 310 + ++ENA+GI P+ +R L V R+ SH+L + + + Q Sbjct: 73 SEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMDFH 132 Query: 311 EKSMTMAELLIGSRKTYGLNLIGG--------VRRDI-------------------LKEQ 343 K + G+ +GG V ++ ++ Sbjct: 133 AKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDEDI 192 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPY-------- 395 + + +RE +A+ + LV L + I + + R D+P+ Sbjct: 193 QTEVADELREKKAENNYLVSSLFYGDRFNINAERIETMPY---YEYRKDNPHSKESTTLI 249 Query: 396 ADYGNIPKT---------LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLT 445 A YG FT ++ RV++T +L LE LD++ D P T Sbjct: 250 AFYGGEKVEAGPRARMKVYREFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRT 309 Query: 446 EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVS 505 + + P +G EAPRG +H LGD ++ + T N PV+ M +G +V Sbjct: 310 KNIVFGP-GKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVK 368 Query: 506 DAPLIIGSLDPCYSCTDRVTLV 527 A ++ DPC CT V + Sbjct: 369 AAEAVMRLYDPCIPCTTHVVRL 390 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 175 bits (443), Expect = 6e-42, Method: Composition-based stats. Identities = 76/378 (20%), Positives = 137/378 (36%), Gaps = 47/378 (12%) Query: 195 EPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 L+ + + DA + RG EK+ + V + R+CG+C +H +A Sbjct: 17 GEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVM-RICGLCHASHGIAA 75 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV----GFDTGFMQFFRVR 310 + ++E+A+G+ P+ +R L + R SH L + + + + Sbjct: 76 SEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMDFH 135 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 K L G+ IGG+ +++ A E+L+ Sbjct: 136 AKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDI 195 Query: 371 --------------MEQRTQGIGILDR-QIARDLRFDHPYADYGNIP-----KTLFTFTG 410 + G DR I D PY ++ TL +F Sbjct: 196 QTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYD 255 Query: 411 G--------------------DVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFS 449 G ++ + R+++T ++ L LD + + P T + Sbjct: 256 GEKVETGPRARMITYREFRDESLYGLHLARIEDTRLAIQRLGEILDEIRIEEPFRTGDIT 315 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 ++P +G EAPRG +H+ LG+ ++ + R T N PV+ M +G +V A Sbjct: 316 FRP-GKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKAAEA 374 Query: 510 IIGSLDPCYSCTDRVTLV 527 ++ DPC CT V + Sbjct: 375 VMRLYDPCIPCTTHVVRL 392 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 71/387 (18%), Positives = 125/387 (32%), Gaps = 59/387 (15%) Query: 191 ITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 T+ GH +L + D + +Y RG EK + R CGIC Sbjct: 9 PTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGK-PAEFAPIAVSRFCGICP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN-LGLSCHFVGFDTGFMQF 306 AH+ + ++E+A GI P+ +R + ++HSH L+ ++ F+ Sbjct: 68 IAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRVEYI 127 Query: 307 FRV---REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 R+ R+ + + + G +GG+ + I + +E E VE Sbjct: 128 TRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKEQVE 187 Query: 364 MLLATPNMEQRT--QGIGILDRQIARDLR-----------------FDHPYADYGNIPKT 404 L+ P E RT G I ++ D H Y Y K Sbjct: 188 YLI--PIFENRTLVDGTEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEKE 245 Query: 405 LFT---------------------------FTGGDVFSRVMVRVKETFDSLAMLEFALDN 437 + F + + R E + ++ Sbjct: 246 VAVQACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEIIEE 305 Query: 438 MPDTPLLTEGFSYKPHAF--ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 + L LG EA RG + H + + + ++ + AT N P++ Sbjct: 306 LNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWNIPLI 365 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + A ++ + DPC SC Sbjct: 366 GKAVEAHY-KFAEHVVRAYDPCVSCAT 391 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 172 bits (437), Expect = 2e-41, Method: Composition-based stats. Identities = 61/372 (16%), Positives = 143/372 (38%), Gaps = 62/372 (16%) Query: 206 EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE 265 + I+D F+ +RG+E+ R + + ++ R+CGICG AH +A ++ENAL ++ Sbjct: 23 DGIIDFVEIFFWQYRGIEQYLVNRH-FLDALVINPRICGICGHAHLLATAKAIENALNLK 81 Query: 266 VPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQFFRVREKSMTMAELLIGS 323 + ++A +R I +E + +H+ L + + ++ + +K + ++ G Sbjct: 82 ITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQ 141 Query: 324 RKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDR 383 + GGV D+ ++ L++++R D+ +++ + ++E+ + L + Sbjct: 142 FPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDLEKFFEN---LPK 198 Query: 384 QIARDLRF---------------------------------DHPYADYGNIPK------- 403 I + L + Y + G + + Sbjct: 199 NIGKSLNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPLARNLQNKTI 258 Query: 404 -TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF---SYKPHAFALGF 459 T++ +++R+ R+ E L ++ + + + D + + F + + Sbjct: 259 NTIYEKYQDSIYTRIFARLYEI---LLIINYLIKEIEDLDITQKSFLNYKKRTCGSGVSV 315 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW--------PVLRYMLRGNTVSDAPLII 511 +EAPRG +H + +N+K+ + + + L + I Sbjct: 316 IEAPRGSLIHKIKI-ENEKIKFYDIVMPSQFYLSNGTKEKPSASQMALIREEIKFIDTIF 374 Query: 512 GSLDPCYSCTDR 523 D C C Sbjct: 375 KCFDICAVCVTH 386 >UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU77_GLUOX Length = 479 Score = 171 bits (435), Expect = 5e-41, Method: Composition-based stats. Identities = 96/481 (19%), Positives = 153/481 (31%), Gaps = 61/481 (12%) Query: 60 LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGER 119 L + +D R Y L +EG A + R + + + R A WGER Sbjct: 39 LISCWADDARA--------YVLLLEGDRPLL----ASRAVEERRYLAPSSRFAGAEWGER 86 Query: 120 EIRDMYGLIPVGLP-DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGN 178 D+YG+ + + + W PL P S Sbjct: 87 VAYDLYGVEAMDARGNGAPALDEGGWTSTW-PLSSRPGPAAGGLRPLAGSHLLRPEQT-- 143 Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 P V ++ + HRG+ R E L Sbjct: 144 -------------GLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTP-EEAMPL 189 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 R+ AH +A+ +V A G+ + +LLE+ER+ HL ++ + V Sbjct: 190 VSRMTAGGFVAHPLAFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFDMARTARGVD 249 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 + RE SR+ + G R + E + M+ + Sbjct: 250 AELLATHCDHAREAIARACAEQGVSRRLMDMVACDGFRDGL--EIVPLAQAVHAAMQPRL 307 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + L E+ R G +LD ++A D+R + Sbjct: 308 AALEEL---HRVFAPRLDGFAVLDVRLAERFAVGGVTGRASGRSMDMRRREAGMRLEALR 364 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA--FALGFV 460 T + GD +R +R+ E DSL +LE L + E P +G Sbjct: 365 AT--GSSQGDARAREGLRLAEIRDSLKLLERIL-----GSIGLEDDEPAPDRTDEGIGVA 417 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E RG+ +W L ++ R + PVL MLRG VS P +GS+ + Sbjct: 418 EGARGDVWYWVRL-KEGRIESLHVRDPGVSLLPVLGAMLRGYPVSRVPAALGSIGISPAG 476 Query: 521 T 521 Sbjct: 477 I 477 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 140/385 (36%), Gaps = 66/385 (17%) Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 G L ++G++ +D F+ + G+E+ + + Y + ++ RVCGICG +H A Sbjct: 12 EGEATLKIEGDKKIDFVQIEFWQYHGIEEYLKNK-NYMDALVINPRVCGICGHSHLHATV 70 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL--SCHFVGFDTGFMQFFRVREKS 313 +E ++ ++A R + +E + +H+ + + + + K Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKI 130 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD-VSELVEMLLATPNME 372 +L G + GGV D + ++ L++E++ + + E+++ L + ++E Sbjct: 131 SKAIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLE 190 Query: 373 QRTQGIGILDRQIARDLRF------------DHPY--------------ADYGNIPKTL- 405 + + L + I + L + Y A Y N + Sbjct: 191 RFFEN---LPKDIGKSLNKFLVLGESNIFKSNGDYKNVKEERNKSLSKNALYNNEYYEVG 247 Query: 406 ----------------FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS 449 + +++R+ R ++ L +L++ + + L F Sbjct: 248 PLARMIINKNKNIKKIYDIYSDSIYTRMCAR---IYEPLLLLDYIEQKLSEVDLCEPSF- 303 Query: 450 YKPH---AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV--------LRYM 498 KP+ A+ VEAPRG +H + N+K+ + T N + Sbjct: 304 LKPNVRNGKAIVAVEAPRGSLIHEISI-KNEKIDYYNIVVPTQFNLASSTKENPSPAQAA 362 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 L ++ + D C C Sbjct: 363 LMNEDIAYVDSVFRCFDICAVCMSH 387 >UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6_ORYSJ Length = 352 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 42/218 (19%) Query: 348 LKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRF 391 L+ + R + + P +R +G+G + + A DLR Sbjct: 135 LRRLLGKRQRLLAYLAKKNRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRK 194 Query: 392 DHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE----- 446 Y Y + GD +R +VR+ E +S+ +++ A++ +P P Sbjct: 195 VDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEVRCF 254 Query: 447 ----------------GFSYKPH-----AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 G P+ VEAP+GE + + D+ +RW+ R Sbjct: 255 KKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRWKIR 314 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + N +L +++ ++D I+GS+D D Sbjct: 315 PPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDH 352 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 151/417 (36%), Gaps = 97/417 (23%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + L + I DA FY RG+EK+ R + + ++ R+CGICG AH + Sbjct: 11 VEGEASLNLVWERGVIKDAKIS-FYSTRGIEKVLRER-PFMDALVINPRICGICGHAHLI 68 Query: 253 AYTNSVENALGI-EVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQ---- 305 A ++ENA+GI E+P++A R + E + +H+ + F+ F Q Sbjct: 69 ATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFEPF 128 Query: 306 -------FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE----M 354 + + + + L G + GG+ + + + L+ L LV+E Sbjct: 129 KGERWKRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKTFF 188 Query: 355 RADVSELVEMLLA---------------------------TPNMEQRTQGIG-------- 379 +VSE +E+ L P+ + +G G Sbjct: 189 EKNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGGGLAYCFNPSYK---KGKGKVCKFNVR 245 Query: 380 ILDRQIARDLRFDHPYADYGNIPKTL-FTFTG---------------GDVFS-RVMVRVK 422 + A D +P Y +P GD ++ RV R+ Sbjct: 246 YVQELEAADYSKANP-VRYKGLPYETGPLARELISKNPLVLKLYKNYGDSYAVRVAARLA 304 Query: 423 ETFD----SLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 E D +L+ ++++ + L E S + G VEA RG +H ++ + K Sbjct: 305 EIKDLLEILEKLLKELMNHLEEPSCLWEDRSDE-SGEGFGVVEAARGTLIHRVVI-EKGK 362 Query: 479 LFRWRCRAATYAN--------WPVLRYMLRGNTVSDAPL----IIGSLDPCYSCTDR 523 + ++ + N V + G D+ L ++ S D C CT + Sbjct: 363 IKDYKVITPSQWNLGPRCKKYLGVAEKAIVGL---DSELKAQMVLRSFDLCSVCTTK 416 >UniRef50_UPI0001985C72 PREDICTED: similar to NADH dehydrogenase subunit 7 n=1 Tax=Vitis vinifera RepID=UPI0001985C72 Length = 238 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 42/150 (28%), Positives = 64/150 (42%) Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + A A++++VE L EVP RA IR + E+ R+ +H L L VG T Sbjct: 81 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 140 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + REK + E + G+R GGV +D+ ++ + + EL E Sbjct: 141 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEE 200 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDH 393 M +QR IG + Q A+D F Sbjct: 201 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSG 230 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 157 bits (398), Expect = 8e-37, Method: Composition-based stats. Identities = 91/440 (20%), Positives = 149/440 (33%), Gaps = 90/440 (20%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 +E N+D + +G L + G V ++ A+ ++ R E R + E Sbjct: 3 SETNTDTTRLTLGSL-ARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGR-DFRE 60 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS- 293 ++ R+CGIC A+ V+ N++E A G + Q +R +L E + SH L++ L Sbjct: 61 PPDITSRICGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLH 120 Query: 294 -CHFVGFDTGFMQFFRVR---EKSMTMAEL------LIGSRKTYGLN-LIGGVRRDILKE 342 F+G R E+ +T+ + +IG R + +N +GG R Sbjct: 121 APDFLGASDAIELARIARPDVERGLTLKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTPS 180 Query: 343 QRLQTLKLVR--------------EMRADVSELVEMLLATPNMEQRTQGIGIL------- 381 + + +R +E+ LLA + G+L Sbjct: 181 ELAPLAEQLRWALDDALATVQWVSHFEIPDAEVDTELLALAQPGRYAIEDGVLTTTSGSS 240 Query: 382 ---------------DRQIARDLRFD------HPYADY-------GNIPKTLFTFTG-GD 412 A D P A Y + T G G Sbjct: 241 FAPEEFCDHVAERQVPHSTALHAHLDGQAYLTGPLARYSLHSADLSETARQAATEAGLGT 300 Query: 413 V----FSRVMVRVKE----TFDSLAMLEFALDNMPDTPLLTEGFSYKP-HAFALGFVEAP 463 V F ++VR E ++L ++ P++P P A G EAP Sbjct: 301 VCRNPFQSIVVRAVETVFAVDEALRLIREYYR--PESPY----VDMSPRAATGYGVSEAP 354 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT-----VSDAPL------IIG 512 RG H L ++ R T N + LR ++DA L I Sbjct: 355 RGVLYHLYQLDSEGRILRATIIPPTSQNQAAIENDLRNTLAANLTLTDAELTELCERTIR 414 Query: 513 SLDPCYSCTDRVTLVDVRKR 532 + DPC SC V + ++ Sbjct: 415 NYDPCISCATHFLDVTINRK 434 >UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5I9E7_9EURY Length = 412 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 72/396 (18%), Positives = 134/396 (33%), Gaps = 42/396 (10%) Query: 149 HPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQI 208 H L ++ + P + + E +V+ GP E G F++ GE+I Sbjct: 39 HTLWENIPEGFYERRPLARAFMNNYEIEAKDCGKVLTYGPAAGGLGEAGAFKIATCGERI 98 Query: 209 VDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQ 268 L + R M A + + E +R+ G +++ + V GI+ P Sbjct: 99 DSLVPYLGFKKREMLNKAIGKEPW-EALPYVERITGQFSISYASLFYGLV---FGIDCPD 154 Query: 269 RAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYG 328 E+ER+H+H+ + M + E+ + + +G R Sbjct: 155 YLLF----AKELERVHNHIWVMHKLAGDASQKVANMHLAAITEEFLRLNLKTLGHRYGMN 210 Query: 329 LNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDR----- 383 G + + + + E++ E E L + R Q IL + Sbjct: 211 FLRTG-------PRKYDKFHENLSELKKWFLETAEELSDSRIFIDRLQTTCILKKLDILR 263 Query: 384 -----------QIARDLRFDHPYADYGNI--PKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 + RD R + ++ + + GD SR ++RVKE S + Sbjct: 264 NDGVGIPARASGVLRDARKI---GIFKDLYGDYSPPMESYGDSLSRFLIRVKEVEKSFEI 320 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 LE + + + F G EAP G D++ + + ++ R + Sbjct: 321 LESI--ELKECKVKRNAKK---DGFYEGMAEAPPG-DIYMGVKIEKGRVREIIIRPPSLV 374 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 + +RGN +D P + S +S D Sbjct: 375 MYHAFSVGIRGNVFTDFPFALDSFGAYFSDADIFGR 410 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 91/414 (21%), Positives = 156/414 (37%), Gaps = 84/414 (20%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVH---RGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 + GH L ++ E + +F VH R E + Y + L+ R+CGIC A Sbjct: 12 TKIEGHANLTIEIED-ENLKRVIFGVHEGSRYFEAFMVGK-SYKYLPELAGRICGICTVA 69 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF--------VGFD- 300 H +A +VE+ALGIE+ + +R ++L + SH+L+L + Sbjct: 70 HEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELAN 129 Query: 301 ---TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 + F ++E S M EL+ G + G V + I KE + +K ++E+ Sbjct: 130 KNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPF 189 Query: 358 VSELVEMLLAT--PNMEQRTQGIGILD--------RQIARDLRFDHPY----------AD 397 + + E+ L+ P E+ ++ + + D +IA P+ + Sbjct: 190 LLDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVE 249 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRV-------KETFD----------SLAM----LEFALD 436 Y + +L G D + R+ +E + S + L AL+ Sbjct: 250 YSSAKHSLI--EGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALE 307 Query: 437 N----MPDTPLLTEGFSYKPH--------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 N + + Y PH +G +EAPRG +H + N K Sbjct: 308 NVHFALEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKI-KNGKCTYVNI 366 Query: 485 RAATYANWPVLRYMLRGNTV-----------SDAPLIIGSLDPCYSCTDRVTLV 527 T N + +L+G +A II + DPC SC+ VT + Sbjct: 367 ITPTAMNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVTRI 420 >UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL31_THEYD Length = 201 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 79/152 (51%), Gaps = 5/152 (3%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLF 64 ++ I LK QFP V++ ++ QV++ VK N + ++++YL Q L L Sbjct: 31 ATEESLKIAYKLKEQFPEEVIEI-KEFRGQVSVIVKSNKIKEILKYLKNQQGFNHLQDLC 89 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 G D + + Y L + I V+A V+ ++ E SVT A W ERE DM Sbjct: 90 GVDYSPEKPRFEIVYNL-YSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFDM 148 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 +G+ +G PD RR+++P+DW + +PLRKD Sbjct: 149 FGIRFIGHPDLRRILMPEDW--NGYPLRKDYP 178 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 85/436 (19%), Positives = 143/436 (32%), Gaps = 88/436 (20%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 N + R + VG L + G + + + + ++ R E R Y E Sbjct: 2 NPEIRTLTVGALTR-VEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGR-AYTEPPD 59 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CH 295 ++ RVCGIC A+ V+ N++E+A G+ + +R +L E +HSH L++ L Sbjct: 60 ITARVCGICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPD 119 Query: 296 FVGFDTGFMQFFRVREKS----------MTMAELLIGSRKTYGLNLIGGV----RRDILK 341 F+G+ RE + E + G +GG RRD L Sbjct: 120 FLGYPDAISFAKDHREFLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELG 179 Query: 342 EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARD---LRFDHPYADY 398 + + + + + + E + + DR D +R P + Sbjct: 180 PLAEELRRALDDALFTLRSVAEFDFPDVEFDHEFLALTQPDRYAIEDGAIVRSAGP--AF 237 Query: 399 GNIPKTLFTFT-------------GGDVF-----SRV----------------------- 417 + G+ + +R Sbjct: 238 PVADFSEHVREMQVPHSTALHATLDGERYLTGPLARYSLSSAALSPTARQAAAQAGLGAQ 297 Query: 418 --------MVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFAL--GFVEAPRGED 467 +VR E + +E AL + D F P + G EAPRG Sbjct: 298 CRNPFRSIVVRAVEV---VYAIEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLL 354 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRY----MLRGN-TVSDAPLI------IGSLDP 516 H +GD+ + T N + Y ++ GN T+ DA L I + DP Sbjct: 355 YHRYEIGDDGLVSAATMVPPTAQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDP 414 Query: 517 CYSCTDRVTLVDVRKR 532 C SC+ + V + Sbjct: 415 CISCSAHFLTLTVERG 430 >UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWG9_9BACT Length = 166 Score = 146 bits (370), Expect = 1e-33, Method: Composition-based stats. Identities = 43/150 (28%), Positives = 75/150 (50%), Gaps = 7/150 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGN 66 ++I+ +K+ FP A+ D ++T +K + V ++ + +L + G Sbjct: 3 NDSIITLVKSHFPEAITDCYDFR-GELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGV 61 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D+ NG + V Y L +K + +K V +D+ +VT A W ERE DM+G Sbjct: 62 DKIETNGVFEVVYHL-YSMQKKHRVRLKVPVPSDNPTISTVTHIWKTANWHERETYDMFG 120 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 + G PD R++++P+D+ + HPLRKD Sbjct: 121 IQFQGHPDLRKILMPEDF--EGHPLRKDYP 148 >UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermaceae RepID=Q2S5J1_SALRD Length = 234 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 11/189 (5%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVL 63 + R A++ AL+ +F AVLD ER + TI V+ N + +V ++L + + L Sbjct: 40 KDTTRVPAVIDALREEFGAAVLDVERYA-NEDTIYVEKNRIREVCRFLKEEEGFDYFVDL 98 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D T Y V+Y L + + + +K VD + PSVT AA W ERE D Sbjct: 99 GGIDNFTAEDRYEVFYNL-VSTERQKRLRLKVQVDEGDMQVPSVTEVYRAANWNEREAYD 157 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 M+G V PD RR+ +P+D+ D HPLRK+ + +T + D + Sbjct: 158 MFGFSFVDHPDPRRMYMPEDF--DYHPLRKEFPQLGIPGSLPLPPQT------PDGDLTM 209 Query: 184 IPVGPLHIT 192 P H + Sbjct: 210 DPFAAAHGS 218 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 76/432 (17%), Positives = 148/432 (34%), Gaps = 95/432 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G+ + V ++ + R E R Y E ++ R+CGIC H++ Sbjct: 15 VEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIY-EAPHITCRICGICSCGHTL 73 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVG----------FD 300 A + E+ALGI+ ++ +R +LL E+L SH+L++ L VG Sbjct: 74 ASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKSHP 133 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 ++ R++ + ++L+G +IGG + + + K + ++ D+ Sbjct: 134 DVVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKKLLALQKDIEV 193 Query: 361 LVEML--LATPNMEQRTQGIGILDRQIAR-----DLRFDH------------------PY 395 +E+ L P E+ T+ I +++ + D+ PY Sbjct: 194 TIELFKDLKFPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIVPY 253 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMV-------RVKE------------------------- 423 A ++ G +R + + KE Sbjct: 254 ASAKRTKWHRESYAVG-ALARFNLNYEKLHPKAKEAAATLGLKPKCINPYLNTVAQIVEC 312 Query: 424 ---TFDSLAMLEFA------LDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 D++ ++E D + + G + +G VE PRG +H Sbjct: 313 VHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECD 372 Query: 475 DNQKLFRWRCRAATYANWPVLRY-MLRGNTVSD------------APLIIGSLDPCYSCT 521 + C T N + ML+ V + +++ + DPC SC+ Sbjct: 373 ERGIFRNANCIIPTNQNTHNIELDMLK--LVPEIINQSPEEIRLSLEMLVRAYDPCISCS 430 Query: 522 DRVTLVDVRKRQ 533 + V + R Sbjct: 431 VHMVEVKLGDRD 442 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 137/421 (32%), Gaps = 79/421 (18%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 S+ R+ P+ + + G + +GE++ D +F R E+L + + ++V Sbjct: 2 SEVRIDPLTRV----EGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKP-DQVIDT 56 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH-FV 297 R+CG+C A+ + + E+ ++VP+ +R + E + SH ++ Sbjct: 57 VARICGLCPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDF 116 Query: 298 GFDTGFMQFFRVREKSMT-----------MAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 F++ R + + + + ELL G +GG + + Sbjct: 117 YERESFLELMREKRELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIEN 176 Query: 347 TLKLVREMRADVSELVEMLLA----------------TPNMEQRTQGIGI---------- 380 TL + + +E+ L + T+G + Sbjct: 177 TLAEIESALPFAEKALELFLNFDYPEMEKERIFVSLGNHEVYPITEGSAVSSEGMNIEKN 236 Query: 381 ----------LDRQIARDLR-FDHP----------YADYGNIPKTLFTFTGGDVFSR--- 416 L A R D Y ++G +P+ L G + +R Sbjct: 237 EYEEYFVEYQLPHSTALYSRLKDGKAYEVGALARIYNNFGKLPQDLREKVEGVLPARNPF 296 Query: 417 --VMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 ++ R+ E +L + L+ E +G EAPRG H + Sbjct: 297 KSIIARIVEVIYALREAKHILEKFEGGEPHVEYSIR--EGEGVGITEAPRGILYHRYRVN 354 Query: 475 DNQKLFRWRCRAATYANWPVLRYML--------RGNTVSDAPLIIGSLDPCYSCTDRVTL 526 ++ T N + + G+ A ++ + DPC SC Sbjct: 355 SKGEVVFANIVPPTSQNQRAMEEDVLLGLKTLKNGDIRVLAEKLVRNFDPCISCASHFLE 414 Query: 527 V 527 V Sbjct: 415 V 415 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 147/419 (35%), Gaps = 89/419 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + V+G+ + A R++ R E++ + Y EV ++ R+C IC + V Sbjct: 12 VEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYY-EVPDITARICSICPDPYQV 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTG-------- 302 A + ++E A+GI V ++ +R + L + +HSH L+L F+G+ Sbjct: 71 ASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKDAIGMAAQYP 130 Query: 303 --FMQFFRVREKSMTMAELLIGSRKTYGLNL-IGGVRRDILKEQRLQTLKLVREMRADVS 359 +V+ + E++ G R +G+ GG + E + K + Sbjct: 131 ETVKLALKVKRAGNAIKEVITG-RTVHGVVTKPGGYTKVPRAEDLERLRKQLESSIDGAR 189 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIARDLRFD-----------HPYADYGNIPKTLFTF 408 E + + + E + + HP Y ++ + Sbjct: 190 EAIRVFSSLKMPEYSLDDNLYIAVDPGEHYGYSGEYLLVSDGTRHPVEKYMDLTNEVTVE 249 Query: 409 TG--------GDVF-----SRVMV---RV----KETFDSLA------------------- 429 G F +R+++ R+ KE+++SL Sbjct: 250 HSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPRNPFSNNMAQAIEL 309 Query: 430 ---------MLEFALDNMPDTPLLTEGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQKL 479 +++ LD + KP + VEAPRG H L DN K+ Sbjct: 310 LYSVQRAMDIIDGLLD---EGIKDKLMVEVKPRAGEGIAVVEAPRGLLYHHYKLDDNGKV 366 Query: 480 FRWRCRAATYANWPVLRY----MLRGNT-VSD------APLIIGSLDPCYSCTDRVTLV 527 T N + +R +SD +++ + DPC SC+ +T + Sbjct: 367 VFANLVTPTAQNAANMDKYLRIAVRNLKDLSDDELKLKLEMLVRAYDPCISCSVHLTRI 425 >UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Chloroflexi (class) RepID=NUOC_ROSCS Length = 174 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 7/150 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGN 66 +LA L+ P A+L + +++ V+ + DV ++L + +L L G Sbjct: 5 NPTVLARLQAALPDALLGSS-EFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENLCGV 63 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D + V Y L + A + I +K V + PS+T P A + ERE DM+G Sbjct: 64 DYLGREPRFEVVYHL-LSFANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDMFG 122 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 ++ G P R+++P+DW + HPLRKD Sbjct: 123 IVFTGHPCLDRILMPEDW--EGHPLRKDVP 150 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 85/462 (18%), Positives = 144/462 (31%), Gaps = 116/462 (25%) Query: 191 ITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 + GH ++ V D + D + RG EK + R E + R+CGIC Sbjct: 8 PVTRIEGHAKITVHLDDAGNVEDTRLHVME-FRGFEKFLQGR-PIEEAPRIVPRICGICD 65 Query: 248 FAHSVAYTNSVENALGIE---VPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVG---- 298 H +A +V+ G E V A+ +R I+ +HSH L+ + F+ Sbjct: 66 VQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAGKDR 125 Query: 299 -----------FDTGFMQFFRVREKSMTMAELLIGSR-KTYGLNLIGGVRRDILKEQRLQ 346 +Q +R+ ++ + G R + GG+ ++ E + Sbjct: 126 KTRNVFQIIKDAPDIALQAIELRKNALELV-RATGGRPIHPTSSTPGGISTELDDETQKD 184 Query: 347 TLKL----VREMRADVSELVEMLLATPNMEQ-----RTQGIGILDRQIARDL-------- 389 LK V A + V + ++ T G++ + D+ Sbjct: 185 LLKKAQRNVELAEATLELAVPIFEENIDLVNSLGNIETYHTGLVKDGV-WDVYDGIVRIK 243 Query: 390 -------RFDHP--YAD--------YGNIPKTLF--TFTGGDVF-----SRVMV------ 419 R P YAD Y + V+ SR+ V Sbjct: 244 DKEGNMFREFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPD 303 Query: 420 -------RVKETFDSL------------AMLE-----FALDNMPDTPLLTEGFS---YKP 452 KE ++ ++E + + L E F + Sbjct: 304 AAPKAQEHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGEKFPDSLERQ 363 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR---------YMLRGNT 503 +G VEAPRG H +N + + AT N P + Y+ G Sbjct: 364 AGDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKPGVE 423 Query: 504 VSD-----APLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 V D ++I + DPC SC +R + + Sbjct: 424 VDDKIFNLMEMVIRAYDPCLSCATHTIDSQMRLATLEVYDSE 465 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 78/467 (16%), Positives = 136/467 (29%), Gaps = 123/467 (26%) Query: 191 ITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 + GH ++ V + + D + RG EK + R EV + R+CGIC Sbjct: 3 PVTRIEGHAKITVHLDEAGNVEDTRLHVME-FRGFEKFLQGR-PAEEVPRIVPRICGICD 60 Query: 248 FAHSVAYTNSVENALGI---EVPQRAHTIRSILLEVERLHSHLLNLGLSCHF-------- 296 H +A +V+ G ++ A+ +R ++ +HSH L+ Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLVVPNGT 120 Query: 297 ----------VGFDTGFMQFFRVREKSMTMAELLIGSR-KTYGLNLIGGVRRDILKEQRL 345 +Q ++R + + G R + GG+ ++ +E + Sbjct: 121 RKTRNVFQIIQDMPEVALQAIKIRRNGLDIV-SATGGRPIHPTSSTPGGISTELDEETQA 179 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQR------------TQGIGILDRQIARD----- 388 L +E +E+ + P +E++ T+ GI+ + D Sbjct: 180 DLLAKAKENVELAQATIELAV--PILEEKIDLVKTLGYFGDTRHCGIVTKDGDWDVYNGK 237 Query: 389 LRFDHP----YADYGNIPKTLFTFT-------------------GG-------------- 411 +R Y +Y N+ G Sbjct: 238 VRIKDKDGSIYTEYRNLEYKDIVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVCD 297 Query: 412 --------------DVFSRV----------MVRVKETFDSLAMLEFALDNMPDTPLLTEG 447 D R R+ E S M AL+ + Sbjct: 298 KMPDAAPLAQGALEDFRDRFGYAQYPLLFHWARLIELLASAEMAVDALEQDLSGDKFPDA 357 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR---------YM 498 G VEA RG +H D + + AT N P + Y+ Sbjct: 358 LERT-AGEGAGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAMEMGIQQVAKDYI 416 Query: 499 LRGNTVSD-----APLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 G V D ++I + DPC SC +R + + Sbjct: 417 KPGVEVDDKIFNLMEMVIRAHDPCLSCATHTMDSQMRLATVEVYDSE 463 >UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUS1_CHLT3 Length = 177 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%) Query: 16 ALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL-PVLFGNDERTLNGH 74 AL++ FP A+L+ + ++T VK + ++ Q+L + L + G D Sbjct: 8 ALQSAFPKALLETTKFR-NELTFRVKKENIREISQFLKEELGFNLCVDICGADRFNEEPR 66 Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 + V Y L M I +K ++ PSV PAA W ERE DM+G++ V PD Sbjct: 67 FEVIYNL-MNLEHNTRIRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIVFVNHPD 125 Query: 135 QRRLVLPDDWPEDMHPLRKDAM 156 RR+ +P+D+ + P+RK+ Sbjct: 126 MRRIYMPEDF--EYFPMRKEFP 145 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 88/429 (20%), Positives = 156/429 (36%), Gaps = 92/429 (21%) Query: 181 ARVIPVGPLHITSDEPGH--FRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 R + + H+T E GH + V ++V+A + + R E + + M + FL Sbjct: 4 ERNLDINIHHLTRVE-GHANIHIHVKNGELVEAQWAIIETPRFFEVMLKG-MSAEQAPFL 61 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HF 296 + R+CGIC +HS+A ++E A+ I P A +R + + E L SH L+L F Sbjct: 62 TSRICGICSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDF 121 Query: 297 VGFDT--GFMQ--------FFRVREKSMTMAELLIGSRKTYGLNLI-GGVRRDILKEQRL 345 G + M+ +++E +++ G R T+ ++L+ GG+ + +Q Sbjct: 122 AGLPSVLPLMESHPQVVRAGLQLKELGNSISIAAAG-RATHPVSLVLGGITKAPELQQLK 180 Query: 346 QTLKLVREMRADVSELVEML--LATPNMEQRTQGIG--------------ILDRQIARD- 388 + L + +E + +++ V L PN + T+ I + I RD Sbjct: 181 ELLTMTQERKLALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIGGQLVSSDGITRDE 240 Query: 389 ---------LRFDHPYADYGNIPKTLFTFTGGDVFSRV--------------MVR----- 420 D + + + + + +R R Sbjct: 241 NDYLLMTNEYTRDFSTSKFTRLSRN---SSAAGALARFNNNYHLLHPNAQAVAARFGLQP 297 Query: 421 ---------VKETFDSLAMLEFALDN----MPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 + + + + +LE A + M T+ A G VEAPRG Sbjct: 298 VCHNPFMNNIAQLVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAVEAPRGIL 357 Query: 468 VHWSMLGDNQKLFRWRCRAATYAN-------WPVL-RYMLR-----GNTVSDAPLIIGSL 514 H+ D + R C T N L +LR G +++ S Sbjct: 358 YHYMETNDEGMVVRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQCEMLVRSY 417 Query: 515 DPCYSCTDR 523 DPC SC+ Sbjct: 418 DPCISCSVH 426 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 80/407 (19%), Positives = 139/407 (34%), Gaps = 74/407 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + ++ ++ D ++F R E L R Y +V L R+C IC +HSV Sbjct: 12 VEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRH-YWDVPDLEARICAICYLSHSV 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGFMQFFRVR 310 A +E ALG+ VP+ +R + L E + SH L+L L G+ + Sbjct: 71 ASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASKHG 130 Query: 311 EKSM---------TMAELLIGSRKTYGLNL-IGGVRRDILKEQRLQTLKLVREMRADVSE 360 E L+G R+ +G+N+ GG R E+ Q + Sbjct: 131 EVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEELEQIESQCEALLRPARR 190 Query: 361 LVEMLLATP----NMEQRTQGIGIL--DRQIARDLRFDHPYADYGN-----IPKTLFTFT 409 +V + ++ L D+ IA D Y ++ + Sbjct: 191 VVNIFAEQEPLGATVQHYIATNEYLYGDKLIAED-GEKFDYLEHIEEKTLPYSFAKQSRY 249 Query: 410 GGDVF-----SRVMVR-----------VKETFD-------SLAMLEFALD---------- 436 G++F RVM++ +E + S L A++ Sbjct: 250 KGNIFMVGALPRVMLKHDMLTPMAKHFYEEHKEKLASGYVSFNNLAQAIELLYALEKAKE 309 Query: 437 ---NMPDTPLLTEGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 + D + E +P +G+VEAPRG VH + + + T N Sbjct: 310 VAKTLLDKGIEGENVPIEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNH 369 Query: 493 PVLRYML------------RGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 ++ L + + + DPC SC+ + + Sbjct: 370 GIMELSLYEEARKRYGSSDETTFLQKLEETVRAFDPCISCSVHIVRL 416 >UniRef50_D1RAG7 NADH-quinone oxidoreductase n=2 Tax=Parachlamydiaceae RepID=D1RAG7_9CHLA Length = 173 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 + LK P A+L ++Q + T+ V+ L V+ YL + ++ L L G D Sbjct: 5 EAIENLKNHCPEAIL-AQKQFLGETTLEVQKENLIKVLSYLKHDYE-VLMDLTGVDYVDP 62 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + V Y L + I V V+ + PSVT A W ERE+ D++G+ G Sbjct: 63 TPYTKVVYWLHNPKNFE-RIRVIVFVEREEP-IPSVTCLWDGAAWYERELFDLFGVPIEG 120 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET 170 PD +R+++PDDW HPLR+D + E Sbjct: 121 HPDLKRILMPDDW--KGHPLRRDYPLTEQPVQFKHGVEP 157 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 135 bits (341), Expect = 4e-30, Method: Composition-based stats. Identities = 75/432 (17%), Positives = 148/432 (34%), Gaps = 95/432 (21%) Query: 193 SDEPGHFRLFVDGE--QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 + GH + V+ E ++ ++++ R E + R + E ++ R+C IC +H Sbjct: 13 TRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGR-SFEESHHVTSRICAICSVSH 71 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH-FVGFDTGFMQFFRV 309 ++A + E ALG+ V ++ +R + L E L SH+L+LG + + + Sbjct: 72 TIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLADT 131 Query: 310 REKSM-----------TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 E + + E++ G + GG+ + + + L + V Sbjct: 132 HEDELETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVNSWDAV 191 Query: 359 SELVEML----LATPNMEQRTQGIGILDRQI---------ARDLRFDHPYADYGNIPKTL 405 +EL ++L P E+ T+ I + + + D+ + P +DY ++ Sbjct: 192 AELADLLAVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVG-EIPVSDYRDVANEY 250 Query: 406 FTFTGGDVFSR-----VMV---------------RVKETF-------------------- 425 F+R MV R E Sbjct: 251 VVEHSTAKFARHERESYMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPYLNNVAQL 310 Query: 426 --------DSLAMLEFALDN--MPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGD 475 +S+ ++E LD+ P + +G +E PRG H D Sbjct: 311 VEVAHLLGESVRLIEALLDDGLTPQSNYHVPEIDPT-AGQGIGAIEVPRGVLFHEYAYDD 369 Query: 476 NQKLFRWRCRAATYANWPV----LRYMLRGNTVSD---------APLIIGSLDPCYSCTD 522 ++ C T N + ++ T+ D +++ + DPC SC+ Sbjct: 370 TGEVTEANCVIPTNQNHGNIQRDMETLVP--TIVDHPEDEIKHSLEMLVRAYDPCISCST 427 Query: 523 RVTLVDVRKRQS 534 V+ + Sbjct: 428 HYLDVEFAGGEG 439 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 135/400 (33%), Gaps = 74/400 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + D + I D LF +RG+E++ R + + ++ R+CGICG AH Sbjct: 9 IEGEAFLEFQKDKQTITDVKV-LFPHYRGIEEILRGRDPW-DALVINPRICGICGHAHLQ 66 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG-LSCHFVGFDTGFMQFFRVRE 311 A +E+ + + Q+A IR I E + +H+ + H + F + + Sbjct: 67 ATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIV 126 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV--------- 362 + L G ++GGV D + Q L++++R +L+ Sbjct: 127 TINKLLALFSGQWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNL 186 Query: 363 --------------EMLLATPNM---------------------EQRTQGIGILDRQIAR 387 E+LL + +++T+ I + + R Sbjct: 187 TNDLQKLYRTLQEKELLLVGKSHDRFITFSQDSHVSNIKLLHGQKRKTKLTLIEENEQKR 246 Query: 388 DLRFDHPY-ADYGNIPKTLFTFTGGDVFSRVMVR----------VKETFDSLAMLEFALD 436 + Y Y D F R R + ++ ++E +D Sbjct: 247 SYAKNVTYNGKYYETGPLARLMQQTDPFVRYFHRRFKDSITTRIIARIYEVSLLIEKIID 306 Query: 437 NMPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-- 492 ++ L S A+ +EA RG +H + + K+ + T N Sbjct: 307 HLATIDLSQPSVVESKMQDGTAIISIEAARGSLIHQATI-HQGKIETYNFITPTQWNLSN 365 Query: 493 ------PVLRYMLRG---NTVSDAPLIIGSLDPCYSCTDR 523 V++ + G +++ LI S D C CT Sbjct: 366 GTSQNPSVIQKAIVGTSDEKIAN--LIFRSFDICSVCTTH 403 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 63/428 (14%), Positives = 140/428 (32%), Gaps = 94/428 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G LF + + D +F R +E + + + Y + ++ R+CGIC A+ + Sbjct: 11 VEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYR-IIDVTSRICGICPVAYQI 69 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQFFRVR 310 + ++E+A G++V +R + E + SH +++ F+ + F + + Sbjct: 70 SGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVF-EVGKDS 128 Query: 311 EKSMTMAELL----------IGSRKTYGLNL-IGGVRR---------------------- 337 + + + ++ IG R ++ +++ +GG + Sbjct: 129 PEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEKALDLSV 188 Query: 338 ---------DILKEQRLQTL-------------------KLVREMRADVSELVEMLLATP 369 + + K +R + + +++ Sbjct: 189 YALKRFSEFNFPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDNVIKEYQVDH 248 Query: 370 NMEQRTQGIGILDRQIARDLRFDHPYAD----YGNIPK-TLFTFTGGDVFSRVM------ 418 + +R + G RDL P + Y + L + D++ + Sbjct: 249 STAKRAKLYG-------RDLYIVGPISRFNNSYEKLSYMALKSSKDIDLYPPIKNSFKTI 301 Query: 419 -VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQ 477 +R+ E SL + + L ++ K G EAPRG H Sbjct: 302 LIRMVEIIHSLERSIDLIKDYRKESLKNADYTVK-EGTGYGVSEAPRGILWHKYSFDSEG 360 Query: 478 KLFRWRCRAATYANWPVLRYMLRG---------NTVSDAPLIIGSLDPCYSCTDRVTLVD 528 K+ + T N ++ +R + +I + DPC SC + Sbjct: 361 KIKKADIVPPTSQNQDIMEVSVRNMIMNRENIEEILKTGEKVIRNFDPCISCATHFLKIG 420 Query: 529 VRKRQSKT 536 + + + Sbjct: 421 EIRGKKIS 428 >UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=cellular organisms RepID=NUOC_MAGSA Length = 199 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 51/165 (30%), Positives = 75/165 (45%), Gaps = 13/165 (7%) Query: 8 NRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDG---WLPVLF 64 + GE I AL P VL E ++++TVK + V+ YL L + Sbjct: 7 DLGEYIAQAL----PQDVLGTEVNRCGELSLTVKAASIVKVMTYLKDDAGCLFKQLVDVC 62 Query: 65 GNDERTLNGHY-AVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D + VY+ LSM+ ++ + VK D ++ PSVT +A W ERE+ D Sbjct: 63 GVDWPGREQRFDVVYHLLSMKHNQR--VRVKVATDEET-AVPSVTGVFSSAGWFEREVWD 119 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDS 168 MYG++ PD RR++ D+ + HPLRKD D Sbjct: 120 MYGVLFSDHPDLRRILT--DYGFEGHPLRKDFPLTGYVEMRYDDE 162 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 66/415 (15%), Positives = 133/415 (32%), Gaps = 89/415 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + +I D F R +E + + + + + ++ RVCGICG AH + Sbjct: 8 IEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAF-DALVINPRVCGICGHAHLM 65 Query: 253 AYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV-GFDTGFMQFFRVR 310 A ++E+ + + +A IR + L E + +H L+ + + G ++ Sbjct: 66 ATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKATYPS 125 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA-------------- 356 + ++ G ++GGV +I + ++ + + Sbjct: 126 QLMSKAIAVIGGQYPHTSYAIVGGVACEITEIDLIKVQHYIAQTLKFVEQNLLKVESEVF 185 Query: 357 ------------DVSELVEMLLATPNM-----EQRTQGIG-------------------- 379 D++E+++ + + + R G Sbjct: 186 LKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKSVKTKVTHNIS 245 Query: 380 -------ILDRQIARDLRFDHPYADYGNIPK----------TLFTFTGGDVFSRVMVRVK 422 + A+++ F Y + G + + + G +FSR++ R+ Sbjct: 246 LVDVKESQITSSFAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGDSIFSRILARIY 305 Query: 423 ETFDSLAMLEFALDNMP-DTPLLTEGFSY--KPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 E L + + P E K VEA RG +H L ++ + Sbjct: 306 EISQLLEHSRGLIKKIDLSQPSYIEPSIDISKLSGSGYSAVEAARGTLIHRVEL-ESGII 364 Query: 480 FRWRCRAATYANWP--------VLRYMLRGNTVSDA---PLIIGSLDPCYSCTDR 523 + T N V + + G +SD L+ S D C CT Sbjct: 365 KNYEIITPTQWNLSGGTRENHGVSQRAMVG--LSDVKIAELVFKSFDVCSVCTTH 417 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 131 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 75/417 (17%), Positives = 137/417 (32%), Gaps = 91/417 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + GE+I D F R +EK+ E + + ++ RVCGICG AH + Sbjct: 8 IEGEAKLNFSFAGEEIDFVDIE-FMTARNIEKILEGKSAL-DALVINPRVCGICGHAHLI 65 Query: 253 AYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV-GFDTGFMQFFRVR 310 A ++E+ IE+ ++A IR + L E + +H L+ + G ++ Sbjct: 66 ATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKATYPT 125 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILK----------------------------- 341 + + G ++GGV DI + Sbjct: 126 QLMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKFFETNLVQADTKDF 185 Query: 342 ---EQRLQTLKLVREMRADVSELVEM-LLATPNMEQRTQGIG------------------ 379 + + LK ++ + E+ + L R G Sbjct: 186 LVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENSYFTKGKSHKTITTHN 245 Query: 380 ----ILDRQ-----IARDLRFDHPYADYGNIPK----TLFTFTG-----GD-VFSRVMVR 420 + Q +A+++ + Y + G + + + GD +FSR++ R Sbjct: 246 ISIDYVKEQDNLNSLAKNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGDNIFSRIIAR 305 Query: 421 VKETFDSLAMLEFALDNMP--DTPLLTEGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQ 477 V E L + L+ + + + +A VEA RG +H L +N Sbjct: 306 VCEIPQLLNHSKELLEKLDLSEPSYIEPNIDISQINASGESAVEAARGSLIHKVEL-ENG 364 Query: 478 KLFRWRCRAATYA--------NWPVLRYMLRGNTVSDA---PLIIGSLDPCYSCTDR 523 + + T N V + + G + D L+ + D C CT Sbjct: 365 IIKNYEIITPTQWNLGNGTRENLGVSQQAMVG--LKDVKTAELVFKTFDVCSVCTTH 419 >UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKI4_THEYD Length = 177 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 44/149 (29%), Positives = 66/149 (44%), Gaps = 8/149 (5%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDE 68 I+ ++ +F VL ++ +I VK + D++ +L + +L L D Sbjct: 5 EIIKRIRDKFSDEVLWFICFR-DECSIVVKKEKIKDILSHLKNTPELEFDYLIDLTAVDY 63 Query: 69 RT-LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 + V Y L M K I +KA V SV A W ERE DM+G+ Sbjct: 64 LGFREPRFDVVYHL-MSIKHKHRIRIKAQVPEQGCCIDSVADLWATANWFERECYDMFGI 122 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 G PD RR+++P+DW + PLRKD Sbjct: 123 EFTGHPDLRRILMPEDW--NGFPLRKDYP 149 >UniRef50_A4GJ20 NADH-quinone oxidoreductase n=1 Tax=uncultured marine Nitrospinaceae bacterium RepID=A4GJ20_9DELT Length = 161 Score = 131 bits (329), Expect = 9e-29, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 10/157 (6%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGND 67 + I+ +K Q+ AV+D +Q T+T+K + + Q+L + +L + D Sbjct: 4 KKIIERIKEQYASAVIDSHDFRGDQ-TVTMKKDCGNEFFQFLRDDSELAFIFLMDITAVD 62 Query: 68 ERTLNG--HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 + VY+ S++ + + VK V + S+TP A W EREI DMY Sbjct: 63 YLSKKDERFEVVYHFYSLKYNHR--LRVKIPVAEEDCVAESITPFWKTANWYEREIWDMY 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP 162 G+ P+ RR+++ +++ HPLRKD + +P Sbjct: 121 GIKFRNHPNLRRILMYEEF--KGHPLRKDYPINKRQP 155 >UniRef50_Q9KGW7 NADH dehydrogenase I subunit C n=3 Tax=cellular organisms RepID=Q9KGW7_PSEFL Length = 200 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 69/185 (37%), Gaps = 15/185 (8%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW--LPVLFGNDE 68 + ++ L +F + + V L +V+ +L + L L G DE Sbjct: 17 QDVVVELNNRFGPEAFTAQPTRTGMPVLWVARAKLVEVLTFLRNLPKPYVMLYDLHGVDE 76 Query: 69 R--------TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 R + V+Y L M +++K + P+VT P A W ERE Sbjct: 77 RLRTKRQGLPDGVDFTVFYHL-MSIERNSDVMIKVALSESDLSVPTVTGIWPNANWYERE 135 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD--YRLRPEPTTDSETYPFINEGN 178 + DM+G+ G P R+++P W + HPLRKD +P T Sbjct: 136 VWDMFGIDFPGHPHLTRIMMPPTW--EGHPLRKDPGPCHRVRPVQPVPGQATCSRKKPRA 193 Query: 179 SDARV 183 S + Sbjct: 194 SSLKT 198 >UniRef50_UPI0001C31274 NADH (or F420H2) dehydrogenase, subunit C n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31274 Length = 169 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 4/167 (2%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFG 65 + E I L+ + P AVLD + T+ V+ DV+ L + +L L G Sbjct: 3 DATGLELIAQDLRQKHPDAVLDTLHFR-GEATLIVEPARARDVLIVLREKGYRFLASLHG 61 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D +V+Y L ++ I VK + D PSV P A ERE+ DM+ Sbjct: 62 VDYYPEEPRLSVHYQL-LDMDTVDRIAVKVRMPLDDAHVPSVVDLWPGANHPEREVFDMF 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYP 172 G++ G PD RR+++P+D+ + HP R+D T + + P Sbjct: 121 GVVFDGHPDMRRILMPEDY--EGHPQRRDFPIGGEPVIFTYNEDKIP 165 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 71/418 (16%), Positives = 129/418 (30%), Gaps = 80/418 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + + ++ +A ++F R E R Y E ++ R+CGIC A+ + Sbjct: 15 VEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGR-AYTEPPDITARICGICPVAYQM 73 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN--LGLSCHFVGFDTGFMQF---- 306 + ++E + V +R ++ E + SH L+ L F+G+D+ Sbjct: 74 SALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGYDSALHLAQDQP 133 Query: 307 -----FRVREKSMTMAELLIGSRKTYGLN-LIGGVRRDILKEQRLQTLKLVREMRADVSE 360 +K+ +IG R + +N +GG R + + + + + R + Sbjct: 134 ALVKLGLTLKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRRRDLTELVGQLEQARDIARD 193 Query: 361 LVEMLLATPNMEQRTQGIGILDRQ----------IARDLRFDHPYADYGN--IPKTLF-- 406 A E + Q IA D ADY + + Sbjct: 194 TARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPADYDRHFTEEQVPWS 253 Query: 407 -----TFTGGDVF-----SRV-------------------------------MVRVKETF 425 T G + +R +VR E Sbjct: 254 NALHSTLAAGGSYLTGPLARFALGAERLAPAARETAAEIGLRPPERNPYRSIIVRCIEMV 313 Query: 426 DSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 + + + + P + + G EAPRG H + N + + Sbjct: 314 HAADEALRIIADYTE-PDPSALEAPPRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIV 372 Query: 486 AATYANWPVLRYMLRG-----NTVSDAPL------IIGSLDPCYSCTDRVTLVDVRKR 532 T N + LRG +S+ L I + DPC SC + + Sbjct: 373 PPTAQNQRPIEEDLRGVVERFMNLSEPELALRCERAIRNYDPCISCATHFLTLHIEHG 430 >UniRef50_Q11XR7 NADH-quinone oxidoreductase n=4 Tax=Sphingobacteriales RepID=Q11XR7_CYTH3 Length = 168 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 11/158 (6%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGND 67 + I AA+ +F A + E+ Q + V+ L D+ +L L L G D Sbjct: 6 QDIKAAIAERFGEAAITGEQAALAQPQLLVQKAFLKDICFFLRDDERFFFDQLSCLTGLD 65 Query: 68 ERTLNGHYAVYYALSMEGAEKCWIVVKALVDADS-----REFPSVTPRVPAAVWGEREIR 122 + V Y L ++V+K + E PSV A W ERE Sbjct: 66 NGPVKNTVEVIYHL-YSIPFHLFLVIKVEAERGDGKDILPEIPSVEQVWRTADWHEREAF 124 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 D+YG+ G PD RR++LP DW + +PLRKD + Sbjct: 125 DLYGIRFSGHPDLRRILLPADW--EGYPLRKDYTEQEY 160 >UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCD3_THET1 Length = 179 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 10/176 (5%) Query: 2 NVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---G 58 + ++ + I+ L+ PGA+ + + TI V ++ L D+ + L Sbjct: 11 DKQGNNEQPLPIINTLQEIIPGAIEEVTVFR-GETTIVVPVDRLIDIARTLRDNPAMQFN 69 Query: 59 WLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGE 118 +L + D + V Y L I +K VD D + PS+T A WGE Sbjct: 70 YLVDVTAVDWLGRTPRFDVVYHL-YSIPLNHAIRMKVRVD-DGQHVPSLTGLWELANWGE 127 Query: 119 REIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFI 174 RE DM+G++ G PD RR++LP+DW +D PLRKD + +E PF Sbjct: 128 RETYDMFGIVFEGHPDLRRILLPEDW-QDGFPLRKDFP---IGGYGIWAAENVPFR 179 >UniRef50_C1F9E1 NADH-quinone oxidoreductase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F9E1_ACIC5 Length = 159 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 4/148 (2%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNG 73 + AL++ PG + + ++T+T+ + + + + + D Sbjct: 16 IQALESAAPGVITGA-KYDRNELTLTIARDSIRRACEIVRAAGYNFFSDCTCVDWYPSEP 74 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + V Y L + K + + +VD+ S+T PAA + ERE+ D++G+ G P Sbjct: 75 RFQVTYHL-LSHRLKQRVRLCVMVDSSDPSVESITSIWPAANYYEREVWDLFGVRFHGHP 133 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLR 161 D RR+++P++W + HPL+K R Sbjct: 134 DLRRIMMPEEW--EGHPLQKTYPVEGYR 159 >UniRef50_A9G9T0 NADH-quinone oxidoreductase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G9T0_SORC5 Length = 182 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 49/150 (32%), Positives = 69/150 (46%), Gaps = 10/150 (6%) Query: 11 EAILAALKTQFPG-AVLDEE--RQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLF 64 EAI AL+ + AV D + V + V + L + +L + Sbjct: 4 EAIFQALQAKLGEDAVFDFHPVSAKDRDAWLQVAPAKIEPVCRLLREAPELDFDYLECIT 63 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 G D L VY+ S A+K +V+K +D +S ++ AA W ERE D+ Sbjct: 64 GVDYPDLKKIVVVYHIYSY--AKKHRVVLKVFLDRESPAVSTLVDVWSAANWQERECFDL 121 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKD 154 G+ G PD RRL+LPDDW + HPLRKD Sbjct: 122 LGVRFEGHPDLRRLLLPDDW--EGHPLRKD 149 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 91/463 (19%), Positives = 165/463 (35%), Gaps = 118/463 (25%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRM 230 ++R I + P+ + GH ++FV + + +A + + RG EK+ M Sbjct: 3 AQTETPNSRTIRIDPV---TRIEGHAKVFVNLAEDGSLDNAGLVVNEL-RGFEKILVG-M 57 Query: 231 GYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 N + ++ R+CG+C AH +A +N++++A G+ P A +R ++ +HSH L+L Sbjct: 58 EANRMPHITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSL 117 Query: 291 GLSCHF---VGFDT----------------GFMQFFRVREKSMTMAELLIGSRKTYGLNL 331 + +G D + R+R + E++ G R T+ + Sbjct: 118 FVLQGPDLVLGLDADPAIRNVVGIVQANPEVAKKALRIRTVGQRLNEIV-GGRGTHPVTS 176 Query: 332 I-GGVRRDILKEQRLQTLKLVREMRADVSEL--------VEMLLATPNMEQR------TQ 376 + GG+ + E+R LV E + +L V ML P M + Sbjct: 177 VAGGITFVLDSEKRAMLQSLVDEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSV 236 Query: 377 GIGILDRQI--------ARD----LRFDHPYADYGNIPKTLFT---------FTGGDVFS 415 G +LD ++ A D + + P DY F G + Sbjct: 237 GT-VLDNRVSLIQGNIRAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVGFKKGGLLH 295 Query: 416 RVMV----RV------------KETFDSLAM----------------------LEFALDN 437 V R+ +E + L + +E A D Sbjct: 296 DYRVGPLARINAMQQFSTEWANREMEEMLKLGGYPCHITLFQAYAKLVEMIWAIERADDI 355 Query: 438 MPDTPLLTEGFSYK--PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV- 494 + D + E A+G EAPRG +H + ++ + AT N+ + Sbjct: 356 LRDPAVNGETRVPVKFQGGRAVGHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAII 415 Query: 495 ---LRYMLRGNTV---SDAPLIIG---SL---DPCYSCTDRVT 525 + + + + + D L+ S+ DPC SC Sbjct: 416 NRSIEHAAKSHVIGKSDDQALLNAIEFSIRCYDPCLSCATHAV 458 >UniRef50_B3DXN6 NADH-quinone oxidoreductase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DXN6_METI4 Length = 213 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 5/169 (2%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDERT 70 + ++ F +L+ ++ + T+ + ++++ V +YL + G L + G D Sbjct: 7 PLAEEIQKVFSIKLLEV-KEFRGEWTLVMDLSIIQQVARYLKEEKGFGLLLDISGVDHWG 65 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + V Y + + VK V + P+++ P A W ERE DM+G+I Sbjct: 66 EEPRFEVVYHF-YNLQKATLLRVKGRVSEANPIVPTLSFIYPTANWHEREAYDMFGIIFE 124 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS 179 G PD RR+++ + +P +PLRKD + + + P +G Sbjct: 125 GHPDLRRILMWEGYP--YYPLRKDFPVEGKETDQSPVAFAKPAPLDGGP 171 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 124 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 52/214 (24%), Positives = 92/214 (42%), Gaps = 20/214 (9%) Query: 191 ITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 T+ GH +L + D + D+ RG+EKLA + +V ++ RVCGIC Sbjct: 9 PTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPKIASRVCGICP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN----------------LG 291 AH++A T ++E ++G E+P A +R+IL R+HS L+ Sbjct: 68 IAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFYIPGTEKKFN 127 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 L + + + R+RE + T+ + G IGG+ ++ + + L Sbjct: 128 LFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADLA 187 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQI 385 +E V E +E + Q + + + +QI Sbjct: 188 KEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQI 221 Score = 76.8 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 398 YGNIPKTL------FTFTGGD---VFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEG 447 Y P + TF D F++ + R E D + LDN+ +L + Sbjct: 304 YDGQPVEVGPRARLATFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKVLADH 363 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 + EAPRG ++H + + D + L+ + T N+P L G A Sbjct: 364 IPQGDGSMGWAANEAPRGSNIHLARVKDGKVLW-YDMLVPTTWNFPTCSRALTGAPWQIA 422 Query: 508 PLIIGSLDPCYSCTDRVTLVDVRKR 532 +++ + DPC SC + +V+ ++ Sbjct: 423 EMVVRAYDPCVSCATHMIVVNEEEK 447 >UniRef50_A8M620 NADH-quinone oxidoreductase subunit C n=14 Tax=Actinomycetales RepID=NUOC_SALAI Length = 245 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 11/153 (7%) Query: 11 EAILAALKTQFP--GAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL---PVLFG 65 + + AL+ +P G +++ ++T+ ++ + +V Q L + G Sbjct: 74 DEVADALEEAYPAFGEAIEKVVVDRGELTLHIRPERIAEVCQVLRDDLALRFELCSSVSG 133 Query: 66 NDERTLNGH--YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 D + +AVY SM + I ++A V + PSVT P A W ERE D Sbjct: 134 VDYLGADARRLHAVYQLTSM--TYRRQIRLEAAVSVEDPHLPSVTGVYPTADWQEREAYD 191 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 M+G++ G P R+++PDDW + HP RKD Sbjct: 192 MFGIVFDGHPGLTRILMPDDW--EGHPQRKDYP 222 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 72/419 (17%), Positives = 136/419 (32%), Gaps = 78/419 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + + ++ + ++F R E R Y+E ++ R+CGIC A+ + Sbjct: 14 VEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQ-YSEAPDITSRICGICPIAYMM 72 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGFMQFFRVR 310 + ++E+ LG+ V +R +L E + SH L++ + F+G+D+ Sbjct: 73 SAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGDYP 132 Query: 311 EKSMTMAEL---------LIGSRKTYGLN-LIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + L LIG R + +N +GG + ++ + + A +E Sbjct: 133 DLVQRGLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAE 192 Query: 361 LVEMLLATPNM--------------EQRTQGIGILDRQIARDLRFDHPYADYGN------ 400 V + A P E+ G L D+ Y Sbjct: 193 TVRWVAAFPFPDFAPDYEFVALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRPHS 252 Query: 401 IPKTLFTFTGGDVF----SRVMV-------RVKETFDSL-----------AMLEFALDNM 438 G+ F +R + R + S+ +++ +L+ M Sbjct: 253 TALQAQLKERGNYFLGPLARFNLNFEQLTPRTQAVAQSVGMTPLCRNPFKSIIARSLEVM 312 Query: 439 --PDTPLLTEGFSYKPH----------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 + L P G EAPRG H+ + + + Sbjct: 313 FAAEEALRLIDSYIPPAQSVVDYTVRAGCGHGCTEAPRGSLYHYYQIDQQGDILAAQIAP 372 Query: 487 ATYANWPVLRYML-----------RGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 T N + L S +I + DPC SC+ ++V ++ S Sbjct: 373 PTAQNQSTIEQDLWQFVEEHIDLPENQLRSQCEQVIRNYDPCISCSTHFLKLEVDRKSS 431 >UniRef50_C9RJJ7 NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJJ7_FIBSS Length = 200 Score = 124 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 51/167 (30%), Positives = 76/167 (45%), Gaps = 16/167 (9%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQ--VTITVKINLLPDVVQYLYYQHD---GWLPVLF 64 E I AAL+ +F D +R+ ++ VT V L + VQ+L + L + Sbjct: 3 VEEIFAALEGKF-----DVKREPLDKWGVTAVVAAPYLHNAVQFLKEESGIKFDMLVDIA 57 Query: 65 GNDERTL----NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 G D T +AV YA I +K LV +S + P+++ A W ERE Sbjct: 58 GIDYLTYPNHEGPRFAVSYAFKSMKNPGARIRLKVLVSEESLKVPTISDLYANANWYERE 117 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTD 167 + D +G+I G PD RRL+ ++ HPLRKD + + T D Sbjct: 118 VYDQFGVIFEGHPDLRRLLNHVEFV--GHPLRKDYPAQKRQWLSTND 162 >UniRef50_C6A408 Membrane-bound hydrogenase MBH 1, subunit Mbh1K (Hydrogenase subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A408_THESM Length = 174 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%) Query: 11 EAILAALKTQFPGAVLDEERQTP---EQVTITVKINLLPDVVQYLYY-QHDGWLPVLFGN 66 E ++ +K +F + + +TP E++ I + N ++++Y ++ G Sbjct: 4 EELIKRIKERFEVEIYTSQTKTPHPRERIWIEISRNDFKELMKYFQEIDPHTQFSIIIGE 63 Query: 67 DERTLNGHYAVYYALSM--EGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 D H + Y L + E + + V + + PS+ P++V ERE ++ Sbjct: 64 DR---GDHLSATYHLELFCENSPSLSVAVITSCPKEDPKIPSLGDVFPSSVPYERENQEF 120 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP 162 G+I G+PD RRL LPDD+PE ++PLR D Sbjct: 121 LGIIFEGIPDSRRLFLPDDFPEGIYPLRLDEKGIMPEM 158 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 72/430 (16%), Positives = 142/430 (33%), Gaps = 92/430 (21%) Query: 184 IPVGPLHIT-SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +P+ HI + G + V + + + + R E + + +E + R+ Sbjct: 6 LPITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKK-LDEALAVYPRI 64 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFD 300 C C AH + + E A+G EV + +R +L + + SH L+L + ++G+ Sbjct: 65 CSFCSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYS 124 Query: 301 TGFMQFFRVREKSM----------TMAELLIGSRKTYGLNLI-GGVRRDILKEQRLQTLK 349 + +++ M + L G+R + N++ GG + K + K Sbjct: 125 NPLKMLDKYKKEINIALDLKNLGSWMMDEL-GARAIHQENVVMGGFGKLPDKTTLEKMKK 183 Query: 350 LVREMRADVSELVEMLLATPNMEQ----------RTQG--IGILDRQIARDLRFDHPYAD 397 ++E E+ E+ R +G GI I+ F+ P Sbjct: 184 RLQEALPLAEYTFELFSKLEQYEEVEGPIIHMAVRPRGDVYGIYGDAISVSDGFEFPSEG 243 Query: 398 YG--------NIPKTLFTFTGG-------------DVFSRVMVRVKETFDS--------- 427 Y +F G + ++ R KE ++S Sbjct: 244 YKKHMVERVVEHSFAKHSFYNGEKPFMTGAISRVVNHADKLYGRAKELYESHKDLLRPTN 303 Query: 428 -------------------LAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 + +++ AL P+ F + EAPRG V Sbjct: 304 PFANNLAQALELVYFMERGIDLIDEALAK---WPIRPRDEVDVKDGFGVSTTEAPRGILV 360 Query: 469 HWSMLGDNQKLFRWRCRAATYANWPVLR----YMLRGNTVSD-------APLIIGSLDPC 517 + + + ++ T N ++ M + D A +++ + DPC Sbjct: 361 YALEV-KDGRVAYADIITPTAFNLAMMEVHVRMMAEKHYNDDPERLKLLAEMVVRAYDPC 419 Query: 518 YSCTDRVTLV 527 SC+ V + Sbjct: 420 ISCSVHVARL 429 >UniRef50_B8J1D5 NADH-quinone oxidoreductase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8J1D5_DESDA Length = 186 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 11/151 (7%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGND--- 67 I L+ FP VLD R+ Q+ + V+ + +++ YL D L L G D Sbjct: 5 EIADRLRGFFPEEVLDV-REFRGQLAVLVRSGRILELLAYLRDVLDMRHLQALCGVDNSR 63 Query: 68 --ERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 E L+ VY+ S+ ++ I ++A+VD S P A W ERE D+ Sbjct: 64 RNEPGLSPFEVVYHLYSIR--QRHGIRLRAMVDDPEEGIDSAVPLWTGANWLERETWDLV 121 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 G+ G PD RR++LPDDW HPLRK+ Sbjct: 122 GIHFRGHPDLRRILLPDDW--QGHPLRKEYP 150 >UniRef50_A9GUY8 NADH-quinone oxidoreductase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GUY8_SORC5 Length = 217 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 81/209 (38%), Gaps = 15/209 (7%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW---LPVLFGN 66 + +L L QFPGAVL+ Q + T + + D +L L Sbjct: 2 SKKVLELLTAQFPGAVLETHSQFGDD-TAVLDPAVWRDAALFLRNDPRTLMNMFVDLTAV 60 Query: 67 DERTLNG---HYAVYYALSMEGAEKCWIVVKALVDADSR-EFPSVTPRVPAAVWGEREIR 122 D V + S+E + I + + + E S+ P A W ERE Sbjct: 61 DYLWRGDVPRFEVVCHLRSLERNHRIRIKARVGDEEGNGAEIDSIVPVWKGANWFERECY 120 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP-EPTTDSETYPFINEGNSDA 181 D+ G++ G PD RR+++ ++ + HPLRKD R++P P D + D Sbjct: 121 DLLGIVFKGHPDLRRILMYPEF--EGHPLRKDYPANRIQPLIPFRDVPNTGKLPPFGPDE 178 Query: 182 RVIPVGPLHI-TSDEPGHFRLFVDGEQIV 209 + H PG +DG++ V Sbjct: 179 GMSFGRQSHDFALRGPG---ASIDGDEAV 204 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 85/422 (20%), Positives = 137/422 (32%), Gaps = 78/422 (18%) Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 P+ + G L V +I R+F R EK E R Y E+ + R+CGIC Sbjct: 12 PVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGRE-YQEIPDMVARICGICP 70 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL--NLGLSCHFVGFDTGFMQ 305 A+ ++ +++E G +R + E + SH L +L + F+G+ + Sbjct: 71 VAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEM 130 Query: 306 FFRVREKSMTMAE---------LLIGSRKTYGL-NLIGGVRRDILKEQRLQTLKLVRE-- 353 + G R + + +GG R + + + VR Sbjct: 131 ARAHPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAAL 190 Query: 354 --------------MRADVSELVEMLLAT----PNMEQRTQGIGILDRQIA------RDL 389 + D + V + L P E R LD IA R+ Sbjct: 191 PGAEALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREH 250 Query: 390 RFDHPYADYGNIPKTL----FTFTGGDVFSRVMVRVKE-------------TFDSL---- 428 + H A Y + R+ + V+E F S+ Sbjct: 251 QEPHSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARA 310 Query: 429 AMLEFAL----DNMPDTPLLTEGFSYKPHAFALGF--VEAPRGEDVHWSMLGDNQKLFRW 482 A + +AL + D F +G+ EAPRG H L ++ Sbjct: 311 AEIHYALLETSRLLEDYTEPEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHA 370 Query: 483 RCRAATYANWPVLRYMLR-----------GNTV-SDAPLIIGSLDPCYSCTDRVTLVDVR 530 R T N + LR G T+ A ++I + DPC SC V + Sbjct: 371 RIVPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCATHFLKVRLE 430 Query: 531 KR 532 +R Sbjct: 431 RR 432 >UniRef50_B2UPT7 NADH-quinone oxidoreductase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPT7_AKKM8 Length = 194 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 5/162 (3%) Query: 3 VNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLP 61 + S ++ + + +F ++ + + +T+TV + DVV++L L Sbjct: 1 MLSLESQIKTAADNAQNRFGKDIITDRYEFRGDITLTVARQAVADVVRWLRDSAGFDMLV 60 Query: 62 VLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREI 121 L D + + V Y L + + +K VD D E PSVT +A W ERE Sbjct: 61 NLSSVDNMGESPRFEVNYTL-TQSETGANLSLKTKVD-DGEEVPSVTEIFQSANWHEREA 118 Query: 122 RDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 D+ G+ G PD RR+++ + +P PLRKD + E Sbjct: 119 WDLMGIKFSGHPDLRRILMWEGYP--YFPLRKDFPVQGVPTE 158 >UniRef50_Q466A9 F420H2 dehydrogenase subunit C n=4 Tax=Methanosarcinaceae RepID=Q466A9_METBF Length = 158 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 4/155 (2%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDE 68 IL +L FP A+ + ++ + V+ +V QYL L + G D Sbjct: 3 VTEILKSLTGAFPEAISETTAESEIRARAYVEKEKTKEVCQYLKDSLQFDHLCSVCGVDY 62 Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 N VY+ S + +KA + ++ E S+ A W ERE +++G++ Sbjct: 63 IKRNELEVVYHIASYNHP--VVLTLKAKLPRENPEIESIVSVYWNANWYERETYELFGIL 120 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 P+ + L+LP+D + PLRKD + + Sbjct: 121 FKNHPNLKPLILPEDMLGEW-PLRKDYEGFPNKTA 154 >UniRef50_A5G9B7 NADH-quinone oxidoreductase subunit C n=9 Tax=Desulfuromonadales RepID=NUOC_GEOUR Length = 164 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 5/161 (3%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ-HDGWLPVL 63 + + L+ +F ++L+ ++ +VT+ V+ + + ++L + L + Sbjct: 2 ADMAENNRAVIKLREKFASSILEV-KEFRGEVTVIVRKEDIVALCKFLKEELRYNLLTDV 60 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 D + + V Y + K + +KA V +V A W ERE D Sbjct: 61 TAVDYLGKDPRFMVVYNI-YSIPNKDRLRIKAPVTEGECTIDTVCGVWTTANWLEREAYD 119 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEP 164 + G+I PD RR+++ DDW HPLRKD EP Sbjct: 120 LMGIIFKNHPDLRRIMMTDDWV--GHPLRKDYPLQGPDREP 158 >UniRef50_Q2G5Y5 NADH-quinone oxidoreductase subunit C n=36 Tax=Alphaproteobacteria RepID=NUOC_NOVAD Length = 309 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 72/161 (44%), Gaps = 6/161 (3%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDE 68 E +L L G ++ R+ ++ +TV + + D ++ L H+ L + G D Sbjct: 13 NEGVLDTLVAAL-GDMVAASREEHGEILLTVVRDRVEDALRLLRDDHEYQQLMDIAGVDY 71 Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 + V Y L + + ++VK D + P+VT P A W ERE+ DM+G++ Sbjct: 72 PQRAERFDVCYCL-LSVTKNHRVIVKVSTDEATP-VPTVTTLWPNAGWYEREVYDMFGVL 129 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSE 169 G PD RR++ D+ HP RKD ++ + Sbjct: 130 FAGNPDLRRILT--DYGFQGHPFRKDFPLTGYVELRYSEED 168 >UniRef50_B3QY46 NADH-quinone oxidoreductase subunit C n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=NUOC_CHLT3 Length = 240 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 46/163 (28%), Positives = 65/163 (39%), Gaps = 9/163 (5%) Query: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD--- 57 ++ N E +K +F AV D + P TV+ + + + + Sbjct: 74 VDENRDPEPHEMAYRVIKEKFGDAVSDLD-NNPLMPFFTVENVDAWQAIAFFMREDERLR 132 Query: 58 -GWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVW 116 ++ L G D G V Y K + VK + PSV A W Sbjct: 133 FDYMACLSGVDYGD--GRLGVVYNFDALATHKHKLTVKVFCSKEDPRIPSVAEIWLTADW 190 Query: 117 GEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 ERE DMYG++ G PD RR++ PDDW D +PLRKD Sbjct: 191 HEREAYDMYGIVFEGHPDMRRILCPDDW--DGYPLRKDYKVQE 231 >UniRef50_C4V3S3 Possible NADH (Or F420H2) dehydrogenase, subunit C n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V3S3_9FIRM Length = 162 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 47/160 (29%), Positives = 69/160 (43%), Gaps = 6/160 (3%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERT 70 A+L ALK F A D E + P + + L +++ L L L Sbjct: 8 PAMLEALKVAFSSAEYDAETERPA---LYIAAEELLGLLRVLRDDGTLQLTRLENVTAVD 64 Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + + Y L E W+ +K + D+ PSVTP P A + ERE+ D+ G++ Sbjct: 65 WKDRFEMVYHL-FSPTELHWLTLKVTLPHDAPVLPSVTPVFPGAEFEEREVYDLMGIVFT 123 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET 170 G PD RR+ DD+ HPLRKD + P+ E Sbjct: 124 GHPDLRRVFHADDFI--GHPLRKDFVPPPPPAVPSFRKEE 161 >UniRef50_B4UIA3 NADH-quinone oxidoreductase n=4 Tax=Anaeromyxobacter RepID=B4UIA3_ANASK Length = 196 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 8/150 (5%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDE 68 I LK +F V + VK + +V ++L + +L L D Sbjct: 5 EIHERLKARFGDDV-GPLSEPKIDAFCVVKAERIVEVSRFLATEPGLEMDFLEDLTAVDW 63 Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 N VY+ LS + IV+K D + P+V A W ERE+ D++G+ Sbjct: 64 PKRNVIEVVYHLLSYR--HRHSIVLKVEADRAAPVVPTVEGVWKTANWFEREVYDLFGVS 121 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 G PD RRL+LPDDW HPLRKD + Sbjct: 122 FPGHPDLRRLMLPDDWV--GHPLRKDYQEA 149 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 72/428 (16%), Positives = 144/428 (33%), Gaps = 97/428 (22%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G+ + V +I ++++ R E + R + E ++ R+CGIC HS+ Sbjct: 16 VEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIF-EAQHITSRICGICSCGHSL 74 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVG----------FD 300 A + E+ALG+ ++ +R +LL+ E L SH+L++ L +G + Sbjct: 75 ASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHN 134 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL-----KEQRLQTLKLVREMR 355 + R+++ + ++L+G R + ++ I G + + +M Sbjct: 135 AVVRRALRMKKLCNDVCDILVG-RHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMA 193 Query: 356 ADVS--------------ELVEMLLATPNMEQRTQGIGILD--RQIARDLR-----FDHP 394 ++ E V ++ +G D R +D R F P Sbjct: 194 ETLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDVGSTDGKRLGKKDYRQATNEFIDP 253 Query: 395 YADYGNIPKTLFTFTGGDVFSRV-----------MVRVKE--------------TFDSLA 429 + + ++ G +R +E + Sbjct: 254 RSSAKFAKWSRDSYLVG-ALARFNLNSDKLHPTAKAIAEELGLKPICHNPYLNTVAQVVE 312 Query: 430 ML---EFALDNMPD-------------TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 ++ E A+D + D + + +G VE PRG H + Sbjct: 313 IVHCYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVT 372 Query: 474 GDNQKLFRWRCRAATYANWPVLRY----MLRGNTVSD---------APLIIGSLDPCYSC 520 N + + C T N + Y +L + D +++ + DPC SC Sbjct: 373 DSNGIIEQANCIIPTNQNIANIEYDMMKLLP--EILDQTKEEITLKMEMLVRAYDPCISC 430 Query: 521 TDRVTLVD 528 + V Sbjct: 431 SAHYLNVK 438 >UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial n=65 Tax=Eukaryota RepID=NDUS3_NEUCR Length = 283 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 58/126 (46%), Gaps = 7/126 (5%) Query: 34 EQVTITVKINLLPDVVQYLYYQ---HDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCW 90 +++TI + + V +L Y + + D T + + V Y L + Sbjct: 96 DELTIYISPAGVIPVFSFLKYNTAAEYTQVSDITAVDFPTKDQRFEVVYNL-LSVRHNSR 154 Query: 91 IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHP 150 I VK D S PS+TP A W ERE+ D++G+ G PD RR++ D+ D HP Sbjct: 155 IRVKTYADEVSP-VPSITPLYDGANWYEREVYDLFGVFFTGHPDLRRIMT--DYGFDGHP 211 Query: 151 LRKDAM 156 LRKD Sbjct: 212 LRKDFP 217 >UniRef50_C6XG24 NADH-quinone oxidoreductase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XG24_LIBAP Length = 202 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 8/151 (5%) Query: 9 RGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLP---VLFG 65 + E + + F G+V ++++ V L + +L L G Sbjct: 4 KIEDLGDYIVNSFSGSVRFAVNSV-GELSLDVDCGDLVSLCSFLRDDPHCCFVNIIDLCG 62 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D + + + V Y + + VK V A+ + PS+ P A W ERE+ DMY Sbjct: 63 VDFLSRSNRFDVVYHF-LSPKYNRRLRVKIAV-AEGKSVPSIVGIYPGADWFEREVWDMY 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 G+ G PD RR++ D+ + HPLRKD Sbjct: 121 GIFFEGHPDLRRILT--DYGFEGHPLRKDFP 149 >UniRef50_B4UIA8 NADH (Or F420H2) dehydrogenase, subunit C n=4 Tax=Anaeromyxobacter RepID=B4UIA8_ANASK Length = 175 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 46/177 (25%), Positives = 72/177 (40%), Gaps = 8/177 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPV---LFGN 66 +A++AAL +FP AV V+ + + DV ++L + + Sbjct: 2 SKAVIAALVERFPDAVHAPYEGVGGDDCAFVERSRIVDVCRFLKEDPSLAFNMSPYITAV 61 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDAD-SREFPSVTPRVPAAVWGEREIRDMY 125 D + + V Y L + + ++ V PSVT A W ER DMY Sbjct: 62 DYLGASPRFEVVYNL-LSTVHNTRVRLRVKVPEGPEGVVPSVTGLWRGADWFERYCWDMY 120 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 G+ G PD RRL++ D++ + HPLRKD R R + E + +R Sbjct: 121 GIPFSGHPDMRRLLMYDEF--EGHPLRKDYP-LRGRQPLVVEREVHDIFRGPGPASR 174 >UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Alphaproteobacteria RepID=NUOC_JANSC Length = 207 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 7/165 (4%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVL--- 63 S+ + + L + V+ + ++++TV + +++L L Sbjct: 2 SDALKELAEYLSEKRSDDVVSTDVNAMGELSVTVAPAQMVGFIEFLKTDRTCRFSTLIDI 61 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 D + + + V Y + + + V+A + + PS++ P A W EREI D Sbjct: 62 TAVDYPSRDRRFDVVYHF-LSMYQNHRVRVRAAIREED-TLPSISGVHPGAGWYEREIYD 119 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDS 168 M+G++ G D RRL+ D+ HPLRKD + Sbjct: 120 MFGILFTGHADLRRLLT--DYGFRGHPLRKDFPTTGYTEVRYDEE 162 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 595 e-168 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 565 e-159 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 549 e-155 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 546 e-153 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 517 e-145 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 515 e-144 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 507 e-142 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 504 e-141 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 497 e-139 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 493 e-138 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 491 e-137 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 490 e-137 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 486 e-136 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 484 e-135 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 466 e-129 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 463 e-129 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 457 e-127 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 449 e-125 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 449 e-124 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 448 e-124 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 445 e-123 UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Pho... 437 e-121 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 434 e-120 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 431 e-119 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 428 e-118 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 427 e-118 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 420 e-116 UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 ... 419 e-115 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 414 e-114 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 413 e-113 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 412 e-113 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 406 e-112 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 402 e-110 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 390 e-107 UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 383 e-105 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 382 e-104 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 380 e-104 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 379 e-103 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 377 e-103 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 368 e-100 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 368 e-100 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 368 e-100 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 365 3e-99 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 365 4e-99 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 364 4e-99 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 363 1e-98 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 363 1e-98 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 362 1e-98 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 360 9e-98 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 360 9e-98 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 360 1e-97 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 359 1e-97 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 358 3e-97 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 357 6e-97 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 357 6e-97 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 356 1e-96 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 356 1e-96 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 355 2e-96 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 355 3e-96 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 355 3e-96 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 354 5e-96 UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa ... 354 6e-96 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 354 6e-96 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 353 9e-96 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 353 1e-95 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 353 1e-95 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 352 2e-95 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 352 2e-95 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 351 4e-95 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 351 5e-95 UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 351 5e-95 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 351 6e-95 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 350 6e-95 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 350 6e-95 UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax... 348 2e-94 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 348 3e-94 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 347 8e-94 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 346 1e-93 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 346 1e-93 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 344 5e-93 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 344 6e-93 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 344 7e-93 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 343 7e-93 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 343 8e-93 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 343 1e-92 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 342 2e-92 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 342 2e-92 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 342 2e-92 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 342 3e-92 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 339 1e-91 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 339 2e-91 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 339 2e-91 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 338 4e-91 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 337 5e-91 UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloro... 337 7e-91 UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilag... 336 2e-90 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 335 2e-90 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 334 5e-90 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 334 6e-90 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 334 7e-90 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 333 1e-89 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 333 1e-89 UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 332 2e-89 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 331 4e-89 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 331 6e-89 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 329 2e-88 UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane c... 328 3e-88 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 328 5e-88 UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 327 6e-88 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 326 1e-87 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 325 3e-87 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 325 4e-87 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 323 1e-86 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 323 1e-86 UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomyce... 322 2e-86 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 322 2e-86 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 322 3e-86 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 321 3e-86 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 321 4e-86 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 321 5e-86 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 320 1e-85 UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 316 1e-84 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 316 1e-84 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 316 1e-84 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 316 1e-84 UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=... 315 2e-84 UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pe... 314 5e-84 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 313 1e-83 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 311 6e-83 UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemm... 310 1e-82 UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular or... 310 1e-82 UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desu... 309 2e-82 UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 4... 309 2e-82 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 308 3e-82 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 308 4e-82 UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=F... 308 5e-82 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 306 1e-81 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 306 2e-81 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 306 2e-81 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 306 2e-81 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 305 3e-81 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 305 3e-81 UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchae... 305 3e-81 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 304 5e-81 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 300 1e-79 UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=B... 299 1e-79 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 296 1e-78 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 295 2e-78 UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase s... 295 3e-78 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 295 3e-78 UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sora... 293 2e-77 UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga ... 293 2e-77 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 292 2e-77 UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermopr... 289 2e-76 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 286 1e-75 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 284 6e-75 UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 282 2e-74 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 279 1e-73 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 273 2e-71 UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=... 272 3e-71 UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulib... 265 3e-69 UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Myco... 262 3e-68 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 258 3e-67 UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynne... 258 6e-67 UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 255 3e-66 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 248 4e-64 UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax... 248 5e-64 UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 244 5e-63 UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8... 242 3e-62 UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 239 2e-61 UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 234 7e-60 UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein... 230 1e-58 UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax... 226 2e-57 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 219 2e-55 UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit ho... 213 2e-53 UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, s... 213 2e-53 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 212 2e-53 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 210 1e-52 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 208 5e-52 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 206 1e-51 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 204 6e-51 UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49k... 204 1e-50 UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=... 203 1e-50 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 200 8e-50 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 200 9e-50 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 200 1e-49 UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 T... 200 1e-49 UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Glucono... 199 3e-49 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 194 8e-48 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 194 9e-48 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 191 4e-47 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 191 6e-47 UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophi... 191 6e-47 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 191 7e-47 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 189 2e-46 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 189 2e-46 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 189 3e-46 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 187 7e-46 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 186 2e-45 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 186 2e-45 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 183 1e-44 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 183 2e-44 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 182 3e-44 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 180 9e-44 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 180 1e-43 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 180 1e-43 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 179 2e-43 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 179 3e-43 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 178 5e-43 UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein... 177 1e-42 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 176 2e-42 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 176 2e-42 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 176 2e-42 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 176 2e-42 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 175 4e-42 UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (N... 175 5e-42 UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, s... 174 7e-42 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 174 9e-42 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 174 1e-41 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 171 6e-41 UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 T... 170 1e-40 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 170 1e-40 UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=ce... 169 3e-40 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 169 3e-40 UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 167 1e-39 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 167 1e-39 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 166 2e-39 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 165 3e-39 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 164 7e-39 UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus K... 164 1e-38 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 163 2e-38 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 163 2e-38 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 163 2e-38 UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculu... 162 4e-38 UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Ch... 161 6e-38 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 160 1e-37 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 159 2e-37 UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulf... 158 6e-37 UniRef50_Q0CI54 NADH-ubiquinone oxidoreductase 30.4 kDa subunit,... 157 7e-37 UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpet... 155 5e-36 UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermac... 155 6e-36 UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Al... 155 6e-36 UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit,... 154 9e-36 UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6... 154 1e-35 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 152 3e-35 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 151 7e-35 UniRef50_A9MAI1 NADH-quinone oxidoreductase subunit C n=86 Tax=c... 151 8e-35 UniRef50_UPI0001926F1C PREDICTED: similar to NADH dehydrogenase ... 151 8e-35 UniRef50_A9W1N1 NADH-quinone oxidoreductase subunit C n=9 Tax=Al... 151 9e-35 UniRef50_B3RJ43 Putative uncharacterized protein n=1 Tax=Trichop... 150 1e-34 Sequences not found previously or not previously below threshold: >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 595 bits (1533), Expect = e-168, Method: Composition-based stats. Identities = 555/555 (100%), Positives = 555/555 (100%) Query: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL Sbjct: 1 MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL 60 Query: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE Sbjct: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD Sbjct: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD Sbjct: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD Sbjct: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE Sbjct: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR Sbjct: 361 LVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVR 420 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF Sbjct: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF 480 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK Sbjct: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 Query: 541 EIERYGIDRNRSPLK 555 EIERYGIDRNRSPLK Sbjct: 541 EIERYGIDRNRSPLK 555 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 400/568 (70%), Positives = 468/568 (82%), Gaps = 17/568 (2%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLF 64 S G+ LAAL FPG VLD QT +Q+T+TVK+N LP+VV++LYY+ GWL VLF Sbjct: 2 SEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPEVVEFLYYKQGGWLSVLF 61 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 GNDER LNGHYAVYY LSME KCWI V+ VDA+ E+PSVTPRVPAAVWGERE+RDM Sbjct: 62 GNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYPSVTPRVPAAVWGEREVRDM 121 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE-GNSDARV 183 YGLIPVGLPD+RRLVLPDDWP++++PLRKD+MDYR RP PTTD+ETY FINE G+ V Sbjct: 122 YGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPAPTTDAETYEFINELGDKKNNV 181 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 +P+GPLH+TSDEPGHFRLFVDGE I+DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC Sbjct: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GICGFAHS AYT SVENA+GI+VP+RA IR+ILLEVERLHSHLLNLGL+CHF GFD+GF Sbjct: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 MQFFRVRE SM MAE+L G+RKTYGLNLIGG+RRD+LK+ +QT +L ++MR +V ELV+ Sbjct: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361 Query: 364 MLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFT 407 +LL+TPNMEQRT GIG LD +I ARD R DHP+ YG +P + + Sbjct: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTRADHPFVGYGLLPMEVHS 421 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 G DV SR+ VR+ E + +L M+++ LDN+P PL+ EGF+Y PH FALGF EAPRG+D Sbjct: 422 EQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVEGFTYIPHRFALGFAEAPRGDD 481 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 +HWSM GDNQKL+RWRCRAATYANWP LRYMLRGNTVSDAPLIIGSLDPCYSCTDR+T+V Sbjct: 482 IHWSMTGDNQKLYRWRCRAATYANWPTLRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVV 541 Query: 528 DVRKRQSKTVPYKEIERYGIDRNRSPLK 555 DVRK++SK VPYKE+ERY I+R SPLK Sbjct: 542 DVRKKKSKVVPYKELERYSIERKNSPLK 569 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 549 bits (1415), Expect = e-155, Method: Composition-based stats. Identities = 262/562 (46%), Positives = 377/562 (67%), Gaps = 22/562 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 +N E + ++ + G +L E+ P+Q+ + V+ LP+V Y+YY+ G+L + G+ Sbjct: 2 NNGMERLEEKIRKEIGGLLLGVEKPYPDQLYLYVERTKLPEVCSYVYYELGGFLSTMAGS 61 Query: 67 DERTLNGHYAVYYALS----MEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 DER+L+G Y +YY S E +K W+VV + +F SVTP++PAA W ERE+R Sbjct: 62 DERSLHGAYRLYYVFSIEEGYEDGKKPWVVVVTNIPPHDTKFSSVTPKIPAASWYEREVR 121 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 D+ GL+P PD RRLVLPDDWPE +HPLRK+ P E P + Sbjct: 122 DLLGLVPENHPDPRRLVLPDDWPEGVHPLRKEFTYTERPPSVARKCEFRP--SVEGEGIM 179 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 +P+GP+H +DEPG FR+F+DGE++VD DYR+FYVHRG+EKLAE+R+ YN+V F+++R+ Sbjct: 180 QVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERI 239 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 CGICG+AHS AY +VE ALGIEVP+RA IR+++LEVERLHSHLLNLGL+CH GFD G Sbjct: 240 CGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDWG 299 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 FM FF+ REK M MAELL G RKTYG+N++GGVRRDI +++ + L++++E+ + ++ Sbjct: 300 FMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEKEYKAVL 359 Query: 363 EMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLF 406 + +L+T + R + +G+L R +A RD R DHPYA Y + + Sbjct: 360 DAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSEVDFKVP 419 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV +R+ VR +ETF++++++ L+NMP P+ E Y+P+A LG+VEAPRGE Sbjct: 420 VHSEGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPYARGLGYVEAPRGE 479 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 DVH+ + G + K++RWR RA+TY NWP + YM RG T++D PLIIGS+DPCYSCT+RV + Sbjct: 480 DVHFVITGPHSKVYRWRVRASTYNNWPAIPYMCRGYTLADLPLIIGSIDPCYSCTERVIV 539 Query: 527 VDVRKRQSKTVPYKEIERYGID 548 VDV+ +++ PY+ + Sbjct: 540 VDVKSGRTRVFPYEYLVSLSRK 561 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 546 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 233/561 (41%), Positives = 341/561 (60%), Gaps = 25/561 (4%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDE 68 L + +F + D ++ Q ITV+ LP++V Y + L + DE Sbjct: 28 EYLDEIIEKFGEKIRDVKQAAYNQWIITVEREDLPEIVLYFLNHPEWKETQLSSMVATDE 87 Query: 69 RTLNGHYAVYYALSMEGAEKCW-IVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 R LNG +++ Y LS+ G + + V+A + D F S+ + A W ERE +M GL Sbjct: 88 RPLNGKFSITYWLSVNGKAGDFYLGVRAYLPEDDPRFTSIAAKHRGANWYEREAMEMLGL 147 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVG 187 G PD RRLVLPDDWP ++PLRKD P E D V+P G Sbjct: 148 TAEGHPDPRRLVLPDDWPSCVYPLRKDFHYSNSPPGEKFY-----PYKEPKKDEIVVPYG 202 Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 P H+ +E HFRL+V GE I D DYR FY HRG+EK++E R+ Y++V F+++R+CGICG Sbjct: 203 PYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICG 262 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 HS AY +VENA GIEVP+RA IR+I+LE+ERLHSHLLN G+ H VG+D GFM+ + Sbjct: 263 CTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDYGFMKAW 322 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA 367 R+RE M +AE L G+RKTYG+ L+GGVRRD+L+ ++ ++++++ + SELV+ ++ Sbjct: 323 RIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSELVDEAIS 382 Query: 368 TPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGG 411 T +R +G+G+L ++A+ D+R DHPYA Y + + + G Sbjct: 383 TSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYAAYKYLDFKVPVYKEG 442 Query: 412 DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 DV +R +VR++E F+S+ ++E ALD MP +L E P++ A+G EAPRGE++H+ Sbjct: 443 DVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSEAIGMTEAPRGENIHYV 502 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRK 531 M G+N K++R+R RAATY N P + M+RG T++DAPLI+ S+DPCYSCT+RV +VDV Sbjct: 503 MTGENNKVYRYRARAATYNNLPAVPDMMRGYTIADAPLIVASIDPCYSCTERVQVVDVES 562 Query: 532 RQSKTVPYKEIERYGIDRNRS 552 + + + E + I +R Sbjct: 563 GKVRVLSETEFNKLSIKASRR 583 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 203/558 (36%), Positives = 312/558 (55%), Gaps = 17/558 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 + IL + +FPG V P+++ + + + Y++ G L Sbjct: 1 MTTPQTILDDINARFPGCVTRGLAPQPDRLYLRTTTEHIRTLAAYVFNDLKGRLVTGVCT 60 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D + G Y + YA S++ AE + + D + P++T +P A W ERE DM G Sbjct: 61 DMGPVTGEYDIIYAFSLD-AEGILLTLTEPTDPKDPKVPTLTDLIPGADWHERENYDMLG 119 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPV 186 ++ G P+ RRL+L +DWPED+ P+RKD P+ + S A +I V Sbjct: 120 VVAEGHPNPRRLLLSEDWPEDLFPMRKDFPHDFKPPKAEKITTPLRDPLGNESKATIISV 179 Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP T DEP +FRLF +GE+I+ +DYR F+ HRG+EKL++T + YN+V F+++RVCGIC Sbjct: 180 GPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGIC 239 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 GF HS Y +VE+A GIE+P RA IRSI++E+ERLHSHLL LGL+ H++GFDT MQ Sbjct: 240 GFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLAGHYLGFDTVLMQS 299 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 +R+RE M + E + G+RKTYG+NL+GGVRRD+ + + V ++ + EL+ + Sbjct: 300 WRIREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAICDKIMAAVTKIGIECEELISAVA 359 Query: 367 ATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTG 410 +++ R +G+L + AR D R D+PYA + ++ G Sbjct: 360 GDESLKMRMVKVGVLSHEDARGICVVGPTARASGVHIDARADYPYAAFPDLDFKPSFHEG 419 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHW 470 GD+++R +VRV E S+ +++ + +P+ ++ G EAPRGE VH+ Sbjct: 420 GDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFGPIPAWREGYGIAEAPRGECVHY 479 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVR 530 G + + +RWR RAATY + ML+G ++ D P+IIGS+DPC+SCT+RV VD + Sbjct: 480 VQTGKDNRPYRWRVRAATYPQLQAVPLMLKGMSIGDFPIIIGSIDPCFSCTERVLTVDTK 539 Query: 531 KRQSKTVPYKEIERYGID 548 + +T K++ Sbjct: 540 SKAIRTYTEKDLLALTRR 557 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 215/514 (41%), Positives = 319/514 (62%), Gaps = 22/514 (4%) Query: 37 TITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKAL 96 V + + ++ + L+ + + G DER +NG +A+Y+ + + E ++V+K Sbjct: 20 VAEVGASNIREIARALFERGYYY-SSGMGVDERPINGRFAMYHIFNCDT-EGRYVVLKIT 77 Query: 97 VDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 S E PS+TP + A W ERE DM G++ G P RL+LPDDWPE ++PLRKD Sbjct: 78 SPEGSPEVPSITPVIKGAEWSEREAMDMLGIVFSGHPKPERLILPDDWPEGVYPLRKDFP 137 Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 + P E D IP+GP H + EP +F L+V G+++VDA+YR F Sbjct: 138 YNKKLPPSKP----IEKEREHKKDVMEIPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGF 193 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 ++HRGMEKLAE+RM N++ FL++R+CGICG HS AY +VE+A GI VP+RA IR+I Sbjct: 194 HIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVEDAAGIYVPERAQYIRTI 253 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 +LEVER+HSHLL G+ CH +GFD+GFM +R RE M +AEL+ G+RKTYG+N++GGVR Sbjct: 254 MLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAELITGNRKTYGINIVGGVR 313 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------- 387 RDI ++++ +TLKL+ + + E+++ + + +R +G+G+L ++ AR Sbjct: 314 RDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVGVLPKKEAREIGVVGPMA 373 Query: 388 -------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 D+R DHPYA Y ++ + + GDVF+R +VR +E F+S M+ AL+NMP Sbjct: 374 RSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNMIRQALENMPP 433 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 L+ + + P +G EAPRGE++H + ++RW RAATY N P + MLR Sbjct: 434 GELINDEYEIPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHPRAATYNNLPAVPIMLR 493 Query: 501 GNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 GN V+DAPLII S+DPC+SCTD V+++D + Sbjct: 494 GNDVADAPLIIASIDPCFSCTDHVSIIDSESGKI 527 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 224/562 (39%), Positives = 327/562 (58%), Gaps = 32/562 (5%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGNDERT 70 L F + + +R T Q + +LPD V + + + L G DER Sbjct: 40 LKEFYEAFKEHIRECKRMTYGQYMFVIDREVLPDAVLWWHNHPEFKETHLSTAVGTDERP 99 Query: 71 LNGHYAVYYALSME-----GAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 LNG + L+++ E W+ +KA + AD FPSV ++PAA+W ERE++D+ Sbjct: 100 LNGKFVYMPFLNVQVEPQNMDENYWVFLKAYMPADDPSFPSVAAKLPAALWIEREVKDLL 159 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIP 185 G PVG PD RRL+LP+DWPE ++PLRKD E ++P Sbjct: 160 GFNPVGHPDPRRLILPEDWPEGVYPLRKDMDYRHSPMAEVK-----TEYRETPEGTTLVP 214 Query: 186 VGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 +GP+H +EP HFRLFV GE+IVD DYR FY HRG+EK E R+ YN+V FL++R+CGI Sbjct: 215 MGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGEGRLTYNQVLFLAERICGI 274 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 CG+ HSV+Y +VE +++P RA IR+++LE+ER+H+HLL +G++ H VG+DTGFM Sbjct: 275 CGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHLLWVGIAAHLVGYDTGFMH 334 Query: 306 FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML 365 +R+RE M + E L G+RK YG+N++GGVRRDIL ++ + LK+V+++R + + +++ Sbjct: 335 AWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKEEILKVVKQIREETKKFLDIA 394 Query: 366 LATPNMEQRTQGIGILDRQIAR----------------DLRFDHPY---ADYGNIPKTLF 406 L T +R +G+GIL ++A+ D R D Y + + Sbjct: 395 LNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKVP 454 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 + GDV +RV+VR+ E F+SL ++E +D MP ++ + ALGF EA RGE Sbjct: 455 VYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIMVPIGDLPEYEEALGFTEAHRGE 514 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 VH+ M G+ K++RW+ RA TY N P + ML+G V+DAPLII S+DPCYSCT+RV Sbjct: 515 VVHYVMTGEKNKVYRWKVRAPTYNNLPAVPEMLKGYHVADAPLIIASIDPCYSCTERVQF 574 Query: 527 VDVRKRQSKTVPYKEIERYGID 548 VDV + K + E I Sbjct: 575 VDVETGKVKVLTEAEFNELSIK 596 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 201/535 (37%), Positives = 313/535 (58%), Gaps = 22/535 (4%) Query: 25 VLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSME 84 + D+ T E + + K + + +V + L L D + Y S+ Sbjct: 11 ITDKVETTDENLIVYSKPSQIKEVAKLL-VMQGARFAHLTAIDFINQKNQIELNYFFSL- 68 Query: 85 GAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW 144 + ++VK ++A S++ +PA +W ERE D++G+ G PD RRLVLPD+W Sbjct: 69 IDDSMNVIVKIPLEASELSISSISEIIPAVIWSERECNDLFGINFEGHPDPRRLVLPDNW 128 Query: 145 PEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVD 204 P+++HPLRK+ PE + + VIP+GP + + +EP +FRL VD Sbjct: 129 PQEVHPLRKNFSYNSKPPESKQP----APLKKPEEGKTVIPIGPFYPSLEEPAYFRLIVD 184 Query: 205 GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI 264 GE+I D DYR FYVHRG+EKLAE+ + Y ++ FL++R+CGICGF HS AY +VE A GI Sbjct: 185 GEEIADFDYRGFYVHRGIEKLAESVLNYQQIPFLAERICGICGFVHSCAYCQAVEKAAGI 244 Query: 265 EVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSR 324 E+P RA IRS+ LE+ERLHSHLL +GL+ H VGFDT FMQ +R+RE M + E++ G+R Sbjct: 245 EIPLRAKFIRSLFLELERLHSHLLWVGLAAHIVGFDTLFMQAWRIREPVMYICEIITGNR 304 Query: 325 KTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ 384 KTYG+N++GGV D+ + K++ ++ +V EL E++L ++ R + +G+L Sbjct: 305 KTYGINIVGGVTIDVHNQHLKDIDKVISQIEKEVRELREIILDDEVIQLRFKNVGVLKYD 364 Query: 385 IAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSL 428 A+ D+R + PYA Y + + GDV++R +VR++E S+ Sbjct: 365 DAKKYCVCGPVARGSGINIDMRTNFPYAAYPMLNIRIPLNKSGDVWARTIVRLEEILISI 424 Query: 429 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 ++ L+N+P+ P + +P A+ ++EAPRG+ H+ M G + +RW RA + Sbjct: 425 NIIRQILENIPEGPTSIKISKIEPWKEAVSYIEAPRGQLFHYVMTGPEGRPYRWSVRAPS 484 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIE 543 Y N+ L ML+G +++DAPLIIGS+DPC+SCT+R +VD++ K +E++ Sbjct: 485 YQNYQALSVMLKGASIADAPLIIGSIDPCFSCTERYEIVDLKTNSIKVYTAEELK 539 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 218/518 (42%), Positives = 318/518 (61%), Gaps = 23/518 (4%) Query: 34 EQVTI-TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIV 92 ++VT+ V + ++ + L+ + G DER +N +A+Y+ + E + ++ Sbjct: 16 DRVTVAEVSPERVREIAKGLFN-AGCYYSCGMGVDERPVNMRFAMYHVFNCEAERRH-VI 73 Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 +K + PS+TP + A W ERE DM G+I G P+ RL+LP+DWPE ++PLR Sbjct: 74 LKLTTPTNELTLPSITPVIEGASWSEREAMDMLGIIFEGHPEPERLILPEDWPEGVYPLR 133 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 KD + P + D +P+GP H T EP +F L+V G++IVDA Sbjct: 134 KDFPYNKKLPPAKPK----EGRKKPRPDIIEVPLGPYHPTLHEPEYFELYVKGDKIVDAK 189 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 YR F++HRGMEKLAE+RM N+V FL++R+CGICG HS AY +VE+A I VP+RA Sbjct: 190 YRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVEDATNIYVPERARY 249 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR+I+LEVERLHSHLL G++CH +GFD+GFM +R RE M +AEL+ G+RKTYG+NLI Sbjct: 250 IRTIMLEVERLHSHLLWFGVACHLLGFDSGFMHLWRAREYIMDIAELITGNRKTYGINLI 309 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GGVRRDI +E++ + L+L+ D E+++ ++ +++R + +G+L ++ R Sbjct: 310 GGVRRDIPEEKKRKVLELLDLAEKDSREILDNVVKMGELKERMENVGVLPKKKGREIGVV 369 Query: 388 -----------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D+R DHPYA YG++ + + G DV SR +VR ETF S +M+ ALD Sbjct: 370 GPVARASGIDTDVRRDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQALD 429 Query: 437 NMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 NMP+ L+ E + LG EAPRGEDVH + K++RW RA+TY N P + Sbjct: 430 NMPEGELINEDYEIPGFKLGLGVTEAPRGEDVHVVITWGENKVYRWHPRASTYNNLPAVP 489 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 MLRGN ++DAP+II S+DPC+SCTD V+++D + Sbjct: 490 VMLRGNDIADAPIIIASIDPCFSCTDHVSIIDSENGRV 527 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 141/586 (24%), Positives = 235/586 (40%), Gaps = 75/586 (12%) Query: 10 GEAILAALKTQFPGAVLDE-ERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFG 65 +L L +FP AVL E ++ V+ L +V ++L+ L + Sbjct: 1 MHRVLETLHERFPEAVLSVREDPQRGDLSAQVRAQDLVEVARFLHDDPGMAFDHLTDICS 60 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D + V Y + I +K V + +VT A + ERE+ D+ Sbjct: 61 ADYPDDLERFEVIYHF-LSLPHNTRIRLKTRVTEEQPTLGTVTSIWKGANFLEREVYDLM 119 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL---------RPEPTTDSETYPFINE 176 G+ G PD RR++LP+D+ E+ HPLRKD +SE Sbjct: 120 GITFEGHPDLRRILLPEDY-EEGHPLRKDFPTEGKGWRSTFDFIPRLDEPESEWTEREIP 178 Query: 177 GNSDARVI----------------PVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 + + +GP H ++ L +DGE++ A + Y+HR Sbjct: 179 QDQRHMFLAGDAPESAKRTTELLLNMGPQHPSTHGVLRVVLELDGERVAKAVPDMGYLHR 238 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 G+EKLAE + Y +V +DR+ +C ++ AY +VE +G+ +P+RA +R+I+ EV Sbjct: 239 GVEKLAEG-LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEV 297 Query: 281 ERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL 340 +R+ HL LG +G T F FR RE + E L G+R T IGGV D+ Sbjct: 298 QRIVGHLFWLGTQALDIGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLT 357 Query: 341 KEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ---------------- 384 + ++ V E +L RT+ + ++ + Sbjct: 358 PALIERLRGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSG 417 Query: 385 IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 +A D+R PY Y + + GGD + R +RV+E S ++E LD +P+ P++ Sbjct: 418 VAYDVRKLEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIM 477 Query: 445 TEGFS---------------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQ 477 + P E P+GE + + + Sbjct: 478 ADMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGELGFFLISDGSP 537 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + R+ ++ + +M RG +SD I G+ D DR Sbjct: 538 RPYRMKIRSPSFVHMGAFDFMARGYLISDIITIFGTYDIVMGECDR 583 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 167/575 (29%), Positives = 247/575 (42%), Gaps = 70/575 (12%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLY---YQHDGWLPVLFGNDE 68 +L L+ +F V E + + T+ +P+++++L Q L L DE Sbjct: 227 PLLEQLRERFGDDVRQE--EGADMPTLVADPAQVPELLRFLKQDIDQPYERLEDLTAIDE 284 Query: 69 -----RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 R + VY+ LS E A ++ VKA + D E PS+T PAA W ERE D Sbjct: 285 TARSQRPAHDLTMVYHLLSFERA--GYLRVKAPLRNDRAEVPSITGLWPAANWYEREAFD 342 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR- 182 M+G+ G PD RR+++P+ W HPLRK P T + S Sbjct: 343 MFGVRFAGHPDLRRILMPEGW--QGHPLRKSHPSRATDMPPFTRDTATTMVPPEGSHFFS 400 Query: 183 -----------VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 ++ +GP H + L + GE+IVD D + Y HRG EK+AE R Sbjct: 401 NRAPVDNQSLSILNLGPQHPGTHGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAE-RQH 459 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 +N+ +DR+ + G +++AY SVE G+EVP RA IR +L E+ R+ SHL+ LG Sbjct: 460 WNQYIPYTDRIDYLAGSLNNLAYLYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLG 519 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 H VG T F REK + EL+ G R IGGV D+ Sbjct: 520 TFAHDVGAMTPVFYAFDSREKIFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFT 579 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPY 395 R+ A + E +L P RT+GIG + RQ A DLR PY Sbjct: 580 RDFEARIDEFDRLLTGGPIFRARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPY 639 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----- 450 Y + T GGD F+R +VR+ E SL ++ A + MP +++ + Y Sbjct: 640 GGYDEFDFDVVTAGGGDCFARYLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYAYPKR 699 Query: 451 ----------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P +E+ +GE ++++ +R R R + Sbjct: 700 EDGLQDIESLIHHFLHVSRGPAAPRGECYRAIESSKGECGYYAVSDGGTGAYRLRIRTPS 759 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + L + RG V+D I+GSLD + DR Sbjct: 760 FPHLQALPQLSRGRLVADVITILGSLDYVLADLDR 794 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 201/554 (36%), Positives = 314/554 (56%), Gaps = 20/554 (3%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNG 73 L LK +F A+ + ++ + + + + QY++ D + G+D+R +G Sbjct: 6 LQQLKDKFGSAIQQADVVNDMRLLVYIDPASVKPICQYIFRDMDARYVISIGSDDRPYSG 65 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + V++ + + EK + + ++ S++ +PAA W ERE++D+ G+ PVG P Sbjct: 66 KFLVFHQFAFD-KEKILFSIICQLPGENPRIDSISGIIPAANWAERELKDLLGIEPVGHP 124 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITS 193 +RLVLPD WP+ HPLRKD ++ + E +E +P GP H T Sbjct: 125 YPKRLVLPDAWPDGHHPLRKDFAWNKIPEGYDEEREF--DFDETPPGCTAVPFGPFHPTL 182 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 DEP HFRL+VDGE + +YR F VHRG+EKL+E+ +GYN+V +++R+CGICG HS+A Sbjct: 183 DEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLA 242 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 + +VEN G+ VP RA IR+I+LE+ERLHSH + +GL+CH VGFDT FMQ +R+RE Sbjct: 243 FCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQAWRIREPI 302 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 M +AE + G+RKTYGL +IGGVR D E +T ++ ++ ++ ++V + N+ Sbjct: 303 MWLAEKITGNRKTYGLGIIGGVRWDFTPELIAETRAVLDKLESEWRQVVAAVSKDKNIMA 362 Query: 374 RTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSRV 417 RT G+G+ D+ + + D R DHPYA Y + + T DV+ RV Sbjct: 363 RTSGVGMADKALCKEMGLVGPVARGGGVDIDARRDHPYAAYDRVDFKVITHNTADVWGRV 422 Query: 418 MVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAF-ALGFVEAPRGEDVHWSMLGDN 476 +VR+ E F+S+ ++ D MP PL+ + + P +EAPRGE H+++ GD+ Sbjct: 423 VVRMLEVFESINIIRQCFDKMPQGPLVADITTELPAGRVGYTSIEAPRGESHHFAITGDD 482 Query: 477 QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKT 536 + RWR RA TY N + M++ ++D + +G +DPC SCTDR+ +D+R K+ Sbjct: 483 NRPRRWRARAPTYQNLQGIPAMIKDQRIADMQISLGGIDPCMSCTDRMETIDIRTGARKS 542 Query: 537 VPYKEIERYGIDRN 550 E+ R Sbjct: 543 WTKAELLSLSRSRK 556 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 213/557 (38%), Positives = 318/557 (57%), Gaps = 28/557 (5%) Query: 8 NRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGND 67 NR +++ + + V + + + + + + N L V ++ + + + D Sbjct: 3 NRIDSVRQHIIEKLGDIVKETKYIGDQALMLRIDRNYLRKAVDIIHNDLNAYFRTMVAVD 62 Query: 68 ERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 ER+LNG +A YY ++ A I+VK AD PS+ VPAA W E E D+ G+ Sbjct: 63 ERSLNGTFASYYIFGLDAAH-LNIIVKTHTSADEPVLPSIIDIVPAADWYELEAWDLLGI 121 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVG 187 R VLPD+WPE ++PLRKD + + IP+G Sbjct: 122 KFEN-RKVHRFVLPDEWPEGIYPLRKDVEYTYRPKPRKVPRQ--------PPTGQRIPIG 172 Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAE-TRMGYNEVTFLSDRVCGIC 246 P H EP +F L+V+GE++VD +Y F+VHRG+EKLAE R Y ++ FL++R+CGIC Sbjct: 173 PYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGIC 232 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 GF HSV+YT SVE A I+VP+RA IRSI+LE+ERLHSHLL +G+ CH +G+D GFM Sbjct: 233 GFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHT 292 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 +R+REK M +AELL GSRKTYG+NL+GGVR+DI ++ + +R++ L +++ Sbjct: 293 WRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYIRSEFKHLSDLIT 352 Query: 367 ATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTG 410 + + +R G GIL R A RD+R D+PYA Y ++ + + Sbjct: 353 SISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAYRDVYFKVPVYNE 412 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHW 470 GD +R++VR+ E F+S+ +LE +D +P P++ E +G VEAPRGE +H Sbjct: 413 GDNLARLLVRIDEVFESIYILEQLIDKLPGGPIMAEKLEVPEGVIGIGNVEAPRGEVIH- 471 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVR 530 + + + +RWR RA TY N P L+ MLR ++DAPL I S+DPC+SCTDR+ +VD+R Sbjct: 472 VTITGHGRPYRWRVRAPTYQNIPALKIMLRDAPLADAPLTIASIDPCFSCTDRIVIVDLR 531 Query: 531 KRQSKTVPYKEIERYGI 547 + ++I + G Sbjct: 532 SNRRFKASMEQIIKAGR 548 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 189/533 (35%), Positives = 286/533 (53%), Gaps = 22/533 (4%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGN 66 S + + L QF G + ++ ++ K L +V Y+ + L + N Sbjct: 3 STNRQLHIDKLSGQFKGNITISRSFLENEIYVSTKKENLLNVCLYIKDIFNAVLSSMICN 62 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 DERTL+ H+ +YY S++ E +++V V EFPS+TP++PAA W EREI+DM+G Sbjct: 63 DERTLDKHFKIYYVFSLQ-REDTFLIVTIPVSEQQPEFPSITPQIPAAHWYEREIKDMFG 121 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPV 186 LIPVG P LVL ++PE+ +PLRKD P + PF IPV Sbjct: 122 LIPVGHPRPETLVLHGNFPENTYPLRKDFDIQTRIPHLES---KLPFFRVEGEGVFEIPV 178 Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP+H EPGHFR G+ I D +LF+ H+G EK+ ET M Y + FL++R+CG+C Sbjct: 179 GPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFET-MPYTKALFLAERICGVC 237 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 +H+ Y ++E IE+P RA IR+I++E+ER+++H+ ++G C F G Sbjct: 238 AASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHG 297 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 FR+RE + E + G+R G+ IGGVR DI + L L+ ++ D +L +M+ Sbjct: 298 FRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLTKMMF 357 Query: 367 ATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFT-FT 409 + ++ R + G L +IAR D R +HPYA Y + + Sbjct: 358 KSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHY 417 Query: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVH 469 GDV +R+ VRV E + S+ ++E + M PL T P+ AL +VE+PRGE+++ Sbjct: 418 EGDVLARIRVRVDEVYQSIYIIEQCFEKMRPGPLKTPIKELPPYKQALSYVESPRGENIY 477 Query: 470 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 W M KLFR++ R+ ++ NWP + + + GN V D PLI S + CYSCTD Sbjct: 478 WIMTAPGNKLFRYKVRSPSFCNWPAIPFAVPGNIVPDFPLINKSFELCYSCTD 530 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 146/599 (24%), Positives = 237/599 (39%), Gaps = 82/599 (13%) Query: 2 NVNSSSNRGEAILAALKTQFPGAVLD--------EERQTPEQVTITVKINLLPDVVQYLY 53 ++ +SN + +L LK +F D ++ + T V N + +V+ YL Sbjct: 15 DMGGASNASD-VLEELKNRFGPPGTDNPGGPMGVVQKTGDDLPTQWVSRNRVHEVLHYLK 73 Query: 54 ---YQHDGWLPVLFGNDERTL-------NGHYAVYYALSMEGAEKCWIVVKALVDADSRE 103 + L L DERT + V Y L + + +K + Sbjct: 74 LKAERPYRMLYDLTAIDERTRVHREDQPASRFTVIYHL-LSFERNADVCLKVALTDTDLR 132 Query: 104 FPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 P++T PAA W EREI DM+G++ G P RR++LP W H LRKD E Sbjct: 133 MPTITDIWPAANWYEREIWDMFGIVFDGHPHLRRILLPPWW--QGHALRKDHPARATEME 190 Query: 164 PTT----------------DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQ 207 P E +D + +GP H + L +DGE+ Sbjct: 191 PFHLSTEKEEAEQETLRFHPEEWGMRRTHDGTDFMFLNLGPNHPSVHGVFRIVLQLDGEE 250 Query: 208 IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVP 267 I+DA + + HRG EK+ E R ++ +DR+ + G +++ Y +VE GIEVP Sbjct: 251 IIDAVPEIGFHHRGAEKMGE-RQSWHTYIPYTDRIDYLGGVMNNLPYVLAVEKLAGIEVP 309 Query: 268 QRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTY 327 R +R ++ E R+ SHL+ G +G + F RE+ + E + G R Sbjct: 310 DRVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERVFDVVEAICGGRMHP 369 Query: 328 GLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA- 386 IGGV +D+ + M A + E ++ + ++ RT+G+G A Sbjct: 370 SWYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKARTRGVGGYSIDEAI 429 Query: 387 ---------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAML 431 D R PY+ Y + T GD + R VRV+E SL ++ Sbjct: 430 EWGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRCAVRVQEIRQSLRII 489 Query: 432 EFALDNMPDTPLLTEGF---------------------------SYKPHAFALGFVEAPR 464 + L+NMP + P A +EA + Sbjct: 490 DQCLENMPAGAHKADHPLTTPPLKKHTLHDIETLIDHFLGVSWGPVIPPGEAFVGIEATK 549 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 G + ++ + N +R R R ++ + ++ + RG +SD I+GS+D + DR Sbjct: 550 GNNGYYLISDGNTTAYRVRIRTPSFPHLQMIPLISRGLMISDLIAILGSIDFVMADVDR 608 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 161/535 (30%), Positives = 263/535 (49%), Gaps = 30/535 (5%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 + V + + V+ L + L + D L + Y G + V + Sbjct: 10 VQVPPEGIREAVRRLVAEGYAHLTAITAVD---LQDSIELIYHFDGGGGYRH---VSVKL 63 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 + PS+ VP A + E+E+RD++G+ ++RR +LP+ +P D P +D Sbjct: 64 PRANPTLPSIAQVVPGADYYEKEVRDLFGVNFQDGAEKRRFILPECYPPDAPPPLLKDVD 123 Query: 158 YRLRPEPTTDSETYPF-----INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 ++ T + ++ V+PVGP H EP +F L VDGE+IV A Sbjct: 124 PASVKALVAEAPTCQVDAVGLHAPLSPESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAF 183 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 R+ +VHRG+EK AE+R + + FL +R+CGIC +H+ + +VE L +EVP+RA Sbjct: 184 VRIGFVHRGIEKAAESRSFFRD-IFLVERICGICSTSHAWCFVEAVERLLNMEVPRRAAY 242 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 +R+++ E+ER+HSH L LGL ++ GF+T FM + +RE M + E + G+R I Sbjct: 243 LRTLVAELERIHSHALWLGLVGYWTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTI 302 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GGVRRD+ + + V R + L+E L + + RT+GIG AR Sbjct: 303 GGVRRDVPDALLRRVSERVETFRREFESLLESLSYSEEIISRTKGIGRYSLDDARKYCAV 362 Query: 388 -----------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D+R PY Y + + T GDV++ + VRVKE +S ++++ ++ Sbjct: 363 GPVRRAAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQLVE 422 Query: 437 NMPDTPLLTEGFSY--KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 MP + P A +EAPRGE ++ + +R + R T AN + Sbjct: 423 KMPSGNPVPPKPFMGTVPEGEAYSRIEAPRGELFYYVKANNTHNPYRVKVRTPTLANIQL 482 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDR 549 +L G T+SD P+++ S+DPC+SC DRVT++D+ ++ + G+ R Sbjct: 483 AAKILEGQTLSDFPVVVTSIDPCFSCMDRVTIIDLSGKRREVSSKFFESLRGVRR 537 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 134/566 (23%), Positives = 224/566 (39%), Gaps = 55/566 (9%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH-DGWLPVLFG 65 N+ E + L +F + V I V P ++ +L +L + G Sbjct: 1 MNKLENLKQLLAGKFKIENFKFTHAVGDDV-IEVPKEDAPALLLFLRESGQFDFLMDVCG 59 Query: 66 NDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMY 125 D + + V Y L + + VKA V + + P A W ERE DM+ Sbjct: 60 ADYPSREKRFDVVYNLFNS-KDSSRLRVKAQV-GEGESIGTAIPAYRGADWFEREAYDMF 117 Query: 126 GLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRP-----EPTTDSETYPFINEGNSD 180 G+I G P+ R+++ + HPLRKD + ++E + N Sbjct: 118 GIIFEGHPNLRKILTHHQFV--GHPLRKDYDANNQQACTNSLPIHFNNEPGSPGDVLNDK 175 Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + +GP H +DGE IV + + Y+HR EK+AET YN+V +D Sbjct: 176 YLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETH-PYNQVIPYTD 234 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+ +++ Y +VE LG+E+P +A +R IL E+ R+ H + +G +G Sbjct: 235 RLNYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGAL 294 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T F F +REK + E L G+R T + IGG+ +D + + L LV+E+R E Sbjct: 295 TSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVKEIRKGTDE 354 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 + M++ QRT+ + + A DLR PY Y + Sbjct: 355 MANMVIDNKIFIQRTKNVCPVSAADAIQWGYTGPMLRACGVNLDLRKAQPYYGYDALDFD 414 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF---------------- 448 + T GD++ R +VR +E S+ ++E N+P Sbjct: 415 VPVGTNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPGGDYTIRDKGIVLPEKKDVYGNIEG 474 Query: 449 -----------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 P EA GE + + + +R + R +A + Sbjct: 475 LMNHFMLIIKGLRPPVGEVYDATEAANGELGFYLVSDGSANPYRLKVRPPCFAIYQSFPT 534 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++G ++DA + S++ DR Sbjct: 535 VVKGAMLADAIATVASMNLIAGELDR 560 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 449 bits (1156), Expect = e-125, Method: Composition-based stats. Identities = 177/530 (33%), Positives = 275/530 (51%), Gaps = 24/530 (4%) Query: 9 RGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDE 68 + I + F + R V + + LP V ++ ++ L L D Sbjct: 2 TAKNITNEITAAFGEE-MASARDVGNNVFVRAGKDALPYVASFVAKRYGASLATLHVADT 60 Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 R + G Y +Y + + +E + ++A V F S+TP + +A W EREI DM+GL Sbjct: 61 RQMTGGYTMYAVMPV-ASENLIVSIEAEVPESPGTFQSLTPMIYSANWFEREIADMFGLT 119 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGP 188 PVG PD R LVL D WPED HPLRKDA + + YP+ IPVGP Sbjct: 120 PVGHPDLRPLVLYDTWPEDYHPLRKDAPGRPPKVDT-----YYPYHRVEGEGVFEIPVGP 174 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 +H EPGHFR V GE ++ + R+ YVH+G+EK++E+ M Y++ FLS+R G G Sbjct: 175 VHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISES-MTYDKGVFLSERTSGDNGM 233 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 AHS AY +VE GIEVP RA IR++ LE+ER+++HL ++G ++ G + Sbjct: 234 AHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAYI 293 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 +RE+ + + E + GSR +N IGGVR+D+ +E + + + + D + V+++ Sbjct: 294 LRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFVDLVNRQ 353 Query: 369 PNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGD 412 ++ RT+ G L + A RD+R DHPYA Y ++ + GD Sbjct: 354 TSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVHIRKEGD 413 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 V +R+ V++ E ++S++++E ALD +P + + + VEAPRGE +HW + Sbjct: 414 VNARMQVKIGEIYESMSIIEQALDRLPAGKIRAATGNIPQGRVGISLVEAPRGELLHWIL 473 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G+N + FR + R ++ NW + GN V D PL+ S + YS D Sbjct: 474 SGENDRPFRHKIRDPSFCNWLAMEIATPGNIVPDFPLVNKSFNLSYSGND 523 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 149/581 (25%), Positives = 241/581 (41%), Gaps = 72/581 (12%) Query: 11 EAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW--LPVLFGNDE 68 + I+ AL+ QF + + I +K L V+++L Q + L L G DE Sbjct: 38 DPIILALRNQFSPDAFTIQSTRTGMLVIWIKREQLLAVIEFLKKQPKPYVMLFDLHGVDE 97 Query: 69 RTL-------NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREI 121 R + ++V+Y L + I++K + PS+ P A W ERE+ Sbjct: 98 RQRVYRHGLPDADFSVFYHL-ISIERNRDIMLKVALSEKDLNVPSLVSLFPNANWYEREV 156 Query: 122 RDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPT---------------- 165 DM+G+ G P+ RRL++P W HPL KD +P Sbjct: 157 WDMFGITFTGHPNLRRLLMPVTW--QGHPLCKDYPARATEFDPFVLTKQKLDLEMESLTF 214 Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 E + D + +GP H +S L +DGE+I+D + Y HRG EK+ Sbjct: 215 KPEEWGMARGNEHEDFMFLNLGPNHPSSHGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKM 274 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 E R ++ +DR+ + G + + Y +VE GI+VP+R TIR +L E+ R++S Sbjct: 275 GE-RQSWHSYIPYTDRIEYLGGCVNEMPYVLAVEKLAGIDVPERVMTIRVMLSELFRINS 333 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 HLL + VG T F R+K + E + G R IGGV D+ + + Sbjct: 334 HLLYISTFIQDVGAMTPVFFAFTDRQKIYDIIEAITGFRMHPAWFRIGGVAHDLPQGWQK 393 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDL 389 + + M + V+ L ++ R+ G+ + A D+ Sbjct: 394 LLQEFLDWMPKRLDSYVKAALQNSILKGRSVGVAAYTTKEALDWGVTGAGLRATGLDFDI 453 Query: 390 RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF- 448 R PY+ Y N + GD + RVM++V+E SL +L+ L+NMP P + Sbjct: 454 RKWRPYSGYENFEFEVPIGNNGDCYDRVMLKVEELRQSLHILKQCLNNMPAGPFKADHPL 513 Query: 449 --------------------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRW 482 P A +EA +G + ++ N +R Sbjct: 514 TTPPPKERTLQHIETMINHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGNTMSYRT 573 Query: 483 RCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R R ++A+ + ++RG+ VSD + +GS+D S DR Sbjct: 574 RVRTPSFAHLQQIPAVIRGSLVSDLIVYLGSIDFVMSDVDR 614 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 166/504 (32%), Positives = 275/504 (54%), Gaps = 24/504 (4%) Query: 36 VTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKA 95 + + V + V+ L + +L + G DER NGH++VY + + + K Sbjct: 30 IKLGVPAASFMETVKRLKAE-GAYLLTMTGVDERDYNGHFSVYSVFGL-PGDTTLVETKI 87 Query: 96 LVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDA 155 +++A++ F S++P +P+A W EREI+DM G++P G PD RR+ + DWP+D+ P+RKD Sbjct: 88 VLNAENPTFTSISPVMPSAHWLEREIKDMLGIVPYGHPDLRRVAVHPDWPQDVFPMRKDF 147 Query: 156 MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRL 215 + R P + F +PVGP+H EPGHFR F GE +++ +L Sbjct: 148 IAGRQVPRVQGEM---QFCKVEGEGLYQVPVGPVHAGIIEPGHFRFFTFGEDVINLQAQL 204 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 FY HRG+EK AE + + + +++RVCG+C +H+V+Y ++E+ GI P RA IR+ Sbjct: 205 FYTHRGIEKTAEGKH-FLDAVLVAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRT 263 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 +LLE+ERL++H+ ++G C +GF G + ++E+ M M L G R G + GGV Sbjct: 264 VLLEMERLYNHVGDIGNMCAGIGFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGV 323 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL------ 389 + D+ + + ++ ++ EL + +L++ ++ R Q G+L ARDL Sbjct: 324 KIDLKDT--EGIGRALDTVKRELKELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPA 381 Query: 390 ----------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 R + PYA Y + + GDV+ R++ R++E+ S ++ +N+P Sbjct: 382 ARASGVNRDLRREFPYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLP 441 Query: 440 DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML 499 L +P+ A+G+ E+ RG +VHW M G + ++R+ R+A++ NWPV+ L Sbjct: 442 AGELQAPITYLQPYHTAVGYTESARGANVHWVMSGPDNTVYRYMVRSASHCNWPVVPLCL 501 Query: 500 RGNTVSDAPLIIGSLDPCYSCTDR 523 GN V D PLI S + CY+C DR Sbjct: 502 PGNIVPDFPLINKSFELCYACLDR 525 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 166/528 (31%), Positives = 258/528 (48%), Gaps = 21/528 (3%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 + L+ +F G + + P+++ + + L + LY + G L +F D R Sbjct: 9 PVFDELQQRFEGQLQRVDASQPDELHLHAPLELASALCSTLYRKSGGRLVSVFAEDGRAG 68 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + VYY +++ A +++V+ +V A+ E S+T V A W EREI+D++GL VG Sbjct: 69 GAGFYVYYLYAVDAAHG-FVLVRVVVPAERPELISLTNAVHAVNWQEREIQDLFGLKLVG 127 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 P+ RR VL DDWP ++ PLRKD P + + + +PVGP+H Sbjct: 128 HPNPRRCVLHDDWP-EVFPLRKDFDLQTQLPPFSGERHKFRE--VAGEGVFQVPVGPVHA 184 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 EPGHF V GE ++ R+FYVH+G EKL E+ + L++ + G FAH+ Sbjct: 185 GVIEPGHFLFSVAGEPVLYLQLRMFYVHKGTEKLFES-LPITHGVRLAESISGDSAFAHA 243 Query: 252 VAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVRE 311 A+ +++E A G+ P R +R++ LE+ER+ +H+ ++G C V F T M R++E Sbjct: 244 TAFCHAIERAAGVAAPPRGRALRTLCLELERISNHVADIGAICTDVAFVTAQMHALRLKE 303 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 + + E L G+R G+ +GGVR D Q V + +LVE++ + Sbjct: 304 QVLRWNEQLTGNRLLRGMACLGGVRFDFDSAQLDALAAFVDTLEQQFKDLVELIRSHSGT 363 Query: 372 EQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFS 415 R + G+L +AR DLR D P Y + T+ FT GDV Sbjct: 364 RDRLETTGVLAPAVARDLGIVGIAGRASGIDHDLRRDCPTDFYDQVQFTVPVFTEGDVQR 423 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGD 475 R++VR +E F SL ++ L MP + T ALG+VE RGE HW Sbjct: 424 RMVVRREELFQSLGIIRQVLAKMPGGAIATPVGDVPADRIALGYVEGWRGEIFHWVHTAP 483 Query: 476 NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +L R + + + NWP L + GN + D P++ S + YS TDR Sbjct: 484 GNRLARCKIKDPSLQNWPALSEAILGNIIPDFPVVNKSFNLSYSGTDR 531 >UniRef50_Q2C5T4 NADH dehydrogenase I, B/C/D subunits n=2 Tax=Photobacterium RepID=Q2C5T4_9GAMM Length = 565 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 139/574 (24%), Positives = 242/574 (42%), Gaps = 66/574 (11%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH---DGWLPV 62 ++N + ++ + P + + VK L D + +L + L Sbjct: 2 NNNDRQLLIERFDAKAPNHEII------GCESFEVKKEHLIDTLHFLKNEASSRFEMLFD 55 Query: 63 LFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 L DE G +V+Y L + K +I ++ + D+ E P+V P A W ERE+ Sbjct: 56 LSAIDECERGGGLSVFYYL-LSVKNKQFISIRTHIANDTIEVPTVVGLWPNANWYEREVY 114 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTD---------SETYPF 173 DM+G+ PD RR++ D W HPLRK + D ++Y Sbjct: 115 DMFGIKFTDHPDLRRILTFDFW--KGHPLRKSYPCRATLMDEPFDLEGPDFDDVMKSYDI 172 Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + + + V+ +GP H +D ++ + GE I D D + + HRG EK+AE R ++ Sbjct: 173 QGKQDDGSMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAE-RHTFH 231 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 +DR+ + G A + Y +E GIEVP+RA T+R +L E+ R+ SHL+ G Sbjct: 232 NYIPYTDRIDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSI 291 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 H +G F REK + EL+ G R IGGV +D+ + + + Sbjct: 292 THNLGGMAPAFYAFTEREKIFDVIELICGGRMHPAFFRIGGVSQDLPDGWQDKVEHACQG 351 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL----------------RFDHPYAD 397 + V +L +++ + + RTQ I + + +A D R D PY Sbjct: 352 IEQLVPDLEKLMTHSMIFKIRTQNIAVYSQSMALDWGLTGPNLRATGINFDMRKDFPYMG 411 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY------- 450 Y + + GD ++R ++RV+E +SL ++ A MP+ P+L + Sbjct: 412 YEDYDFDVPVGQDGDAYTRTVLRVQEVVESLKIIRQAAARMPEGPILADNAPSFGFPRKQ 471 Query: 451 ---------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 P A E +G + ++ +R R R ++ Sbjct: 472 NALRDIETLIHSFVDTGRGFNFPVAETFYATETAKGVTSYHTISNGTGCPYRVRIRTPSF 531 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ ++ + +G+ +S+ +IGS+D + DR Sbjct: 532 THFQSVKAVSKGDLLSNIICLIGSIDYVLADIDR 565 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 143/530 (26%), Positives = 234/530 (44%), Gaps = 38/530 (7%) Query: 28 EERQTPEQVTI-TVKINLLPDVVQYLYYQH-DGWLPVLFGNDERTLNGHYAVYYALSMEG 85 E + ++ + + L +Q L + +L L G D V Y L Sbjct: 33 ETKPAENELQLHYLAPEDLHAEMQRLKDEEHFDFLETLTGMDWG--EDGLGVVYNLW-ST 89 Query: 86 AEKCWIVVKA-LVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDW 144 + I +K D ++ P+V+ A ERE+ D +G+ +G PD RR+ L +DW Sbjct: 90 TQNKRISLKTATTDRENPFLPTVSDLWNIANIYEREVFDFFGIKFLGHPDMRRIFLREDW 149 Query: 145 ----------PEDMHPLRKDAMDY---RLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 PE+ +PLR D + + S T D V+ +GP H Sbjct: 150 NGYPMRKDDKPEEENPLRMDNEPLADVTTQYDRPDGSITTKENTIFTEDDYVVNIGPQHP 209 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 ++ HFR+ ++GE+I D L Y+HRG+EKL E+ + Y + L++R+ + + Sbjct: 210 STHGVLHFRVALEGERIRKIDPILGYIHRGIEKLNES-LTYPQTLALTERLDYLGAMQNR 268 Query: 252 VAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVRE 311 A +E A GIEV +R IR+I+ E +R+ SH+L C +G + F+ FR RE Sbjct: 269 HALCMCIEKAAGIEVSERVQYIRTIMDEFQRIDSHILFFSCLCQDMGATSAFLYGFRDRE 328 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 + + + E G R N IGGV DI + + + MR ++ E ++ + Sbjct: 329 QILDIFEETCGGRLILNYNTIGGVMADIHPNFVRRVKEFIPYMRHNLQEYYDIFVNNVIA 388 Query: 372 EQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFS 415 R +G+G+L+++ + DLR PYA Y + T+T GD F+ Sbjct: 389 HNRLEGVGVLNKEQVISFGCTGGTGRAAGWSNDLRKHQPYAAYDKVDFQEITYTEGDSFA 448 Query: 416 RVMVRVKETFDSLAMLEFALDNMPDTP--LLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 R+MVR+KE +SL ++E +D +P+ P T+ P VE RGE Sbjct: 449 RLMVRMKEIEESLKIIEQLIDGIPEGPFQTKTKPIIKIPAGTYYSAVEGSRGEFGVLLES 508 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ R R+ + + R N ++D I G++D DR Sbjct: 509 KGDKFPSRLHYRSTGLPLVAAMDTICRDNFIADLMAIGGTVDYVVPDIDR 558 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 130/578 (22%), Positives = 226/578 (39%), Gaps = 78/578 (13%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL---PVLFGNDERT 70 L+ +F + + +++ V + + + +L + L D Sbjct: 9 AKKLEERFG---YPKVSEGKGVLSVEVPKDKFIEFLTFLKEDPEYQFKMFIDLTIIDHGE 65 Query: 71 LN-GHYA-VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 + V S + I+VK A++ P++T A W ERE DM+G+ Sbjct: 66 KENPRFQGVVILFS--PKNQERIIVKTW--AENETLPTLTNLWKGAKWAEREAWDMFGIK 121 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR--------------------------- 161 G + R++L + +P HPLRKD ++ Sbjct: 122 FEGHENLVRMLLWETYP--YHPLRKDFPLEGIKDTELPSLNETLRGENLEGLFNYDRMHT 179 Query: 162 --PEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 P T + V+ GPLH + F +DGE + D + +H Sbjct: 180 ALPTMEDLEITQKKRMPVKTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLH 239 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 RG+EKL E + + + +DR+ I + AY + E LGIEVP++A IR+++ E Sbjct: 240 RGVEKLGEN-VNWQQFIPYTDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAE 298 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 + R++SHLL LG +G T F+ FR REK M + E + G+R T IGGV D+ Sbjct: 299 LSRINSHLLWLGTYALDLGALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADL 358 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ--------------- 384 L++++ +++ +L R + + ++ + Sbjct: 359 PYGALDAIEHLIKDLPQRINDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGS 418 Query: 385 -IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM----P 439 + D+R Y YG + + GD + R +VR++E S+ ++E + + Sbjct: 419 GVPYDVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSK 478 Query: 440 DTPLLTEGFSYK-------------PHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCR 485 D P + K P + PRGE + + K R R R Sbjct: 479 DDPYFFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIYNKKDGLKAHRMRIR 538 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + N V + G ++DA ++ ++DP TDR Sbjct: 539 SGAFYNLQVFTKAIIGRPIADAITLLSTIDPVVGETDR 576 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 144/569 (25%), Positives = 228/569 (40%), Gaps = 64/569 (11%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ---HDGWLPVLFGNDER 69 + AL+ +F + + ++ L ++YL L L DER Sbjct: 3 LAEALQKEFS--ATPFTAACDDCLDFSLPTANLKPCLRYLRDDWRSPYRCLWDLTAMDER 60 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 G + + Y L A + ++ + A PS+T A W ERE+ D++GL Sbjct: 61 PSGGGFTLIYHL-FNYAVGELLRLRVPLPAGQETAPSLTDLYANANWYEREVYDLFGLRF 119 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPT------------TDSETYPFINEG 177 G PD RR++LP W HPLRK+ P + Sbjct: 120 AGHPDLRRILLPPQW--RGHPLRKEEAIRATERPPIVIDREHLQERLGEYQRSPDGQALD 177 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + + V+ VGP H + + L + GE+IV D + Y HRG+EK+AE Y+ Sbjct: 178 DGETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGH-SYHNFIP 236 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DRV + G Y ++E I VP+RA IR++L E+ R+ SHL+ LG + + Sbjct: 237 YTDRVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSYGNDL 296 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G FR R + + E G R IGGV D+ + R L L+R + Sbjct: 297 GTMGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLLALLRRIEKG 356 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNI 401 + + + + P RT+G+G++ + A DLR PY Y + Sbjct: 357 LPDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDRV 416 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----------- 450 + T GD +SR + + E +S+ +L D +P+ P L Sbjct: 417 DFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTLACDAPLALMPKSRTLLD 476 Query: 451 ----------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 P ALG E+ RG ++ + K +R R R ++A+ + Sbjct: 477 IETLIHHFEQMADAFGPPPGSALGLGESARGLLGYFVVSDGGPKPYRLRVRTGSFAHVQM 536 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + RG + D IGSLD + DR Sbjct: 537 ITELGRGLRLPDFIATIGSLDYVLADLDR 565 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 146/529 (27%), Positives = 228/529 (43%), Gaps = 48/529 (9%) Query: 39 TVKINLLPDVVQYLYYQ-HDGWLPVLFGNDERTLNGH--------YAVYYALSMEGAEKC 89 ++ L D + L + +L L G D + V Y L Sbjct: 6 YIEPAALHDEMLRLRNEKQMDFLESLTGMDWGVADEGDAPNVTRGLGVVYHLE-STVTGE 64 Query: 90 WIVVKALVD-ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDM 148 I +K + ++ E PSV+ AA + ERE+ D YG++ +G PD RRL L +DW Sbjct: 65 RIAIKTSTNNRETPEIPSVSDIWKAADFNEREVFDYYGIVFIGHPDMRRLYLRNDWV--G 122 Query: 149 HPLRKDAMDYRLRPEPTTDSETYPFINE----------------GNSDARVIPVGPLHIT 192 HP+RKD + P + ETY E + V+ +GP H Sbjct: 123 HPMRKDNNPEKDNPLRMDNEETYDTTREIELNPDGTYQTQENVIFDDREYVVNIGPQHPA 182 Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + FR+ ++GE I D Y+HRG+EK+ E+ + Y + L+DR+ + + Sbjct: 183 THGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNES-LTYPQTLALTDRLDYLGAHQNRH 241 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREK 312 A +E A+GIEV +R IR+I+ E++R+ SHLL +G T F FR RE Sbjct: 242 ALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAMDLGALTAFFYGFRDREM 301 Query: 313 SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNME 372 + M E G R N IGGV+ D+ + K + +R + E ++ Sbjct: 302 ILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPRVKKFIPYLRGIIHEYHDVFTGNVIAR 361 Query: 373 QRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 QR +G+G+L R+ A D+R PY Y + +T GD F+R Sbjct: 362 QRLKGVGVLSREDAISFGCTGGTGRASGWACDVRKRMPYGVYDKVDFKEIVYTEGDSFAR 421 Query: 417 VMVRVKETFDSLAMLEFALDNMPDTPL--LTEGFSYKPHAFALGFVEAPRGEDVHWSMLG 474 MVR+ E +SL ++E +DN+P+ P+ + P VE RGE + Sbjct: 422 YMVRMDEIMESLNIIEQLIDNIPEGPIQEKMKPIIRVPEGSYYTAVEGSRGEFGVFLESH 481 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ +R R+ + + RG ++D I G+LD DR Sbjct: 482 GDKTPYRLHYRSTGLPLVSAVDTICRGAKIADLIAIGGTLDYVVPDIDR 530 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 152/533 (28%), Positives = 247/533 (46%), Gaps = 27/533 (5%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 + ++ + + D V L + L G D Y+ M+ + I ++ + Sbjct: 4 VEIRPDAISDNVTELLKR-GARLIYASGVDMGVRGIKVNYYFCFDMKEPSEHTI-LRTYL 61 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 D ++ S+TP A W ERE+ + G+ G P+ L LP +W +DM+ + D Sbjct: 62 DRENPVVQSITPITDQADWSERELIEFLGVKVQGHPNPTHLWLPLNW-DDMYLNGRPEAD 120 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 + T P N IP GP H E ++ V+ E + D +L + Sbjct: 121 HETERINAAPPATTPRDNIVTLPVTAIPYGPYHPAFIESNFLKMSVEDEVVKKVDLKLGF 180 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 HR + KL E R Y + FL++R+CG C H++++ SVE+ I++P +A R++L Sbjct: 181 NHRSVIKLMERRDYYKD-IFLAERICGFCNSHHALSFARSVEDIASIDIPPKAKLARTLL 239 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 E+ER+ SHLL +GL GF T M RVRE+ E++ G R T+GL IGG+RR Sbjct: 240 CEMERIQSHLLAVGLIGDLTGFRTMLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIRR 299 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------IAR 387 DI Q L +R M+ V E + L+ + R + +G+L + AR Sbjct: 300 DITPAQADFILNKLRIMKKSVPEFFDQALSNDVLVGRLENVGVLSLENSVKLGAVGPTAR 359 Query: 388 ------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 D+R + PY Y ++ + T GGD +R+ V+++E S+ + E + + Sbjct: 360 GSGLRIDVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKMREVLMSMHIAEQCCEKIKTA 419 Query: 442 PL-LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 P L + P A+ E PRGE ++ R R T+ ++ +++ Sbjct: 420 PAGLATKVNELPCGEAISKSEPPRGELLYHVASNGTNTPDFVRIRVPTFLTAHIMLRLIQ 479 Query: 501 GNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRSP 553 G V D P IIGS+DPC+SCTDRV ++ ++ + R +D R+P Sbjct: 480 GGWVGDVPAIIGSIDPCFSCTDRVAIIKNNEKSVVDM------RTLVDHKRTP 526 >UniRef50_B0R3U3 NADH dehydrogenase-like complex subunit CD n=16 Tax=Halobacteriaceae RepID=B0R3U3_HALS3 Length = 562 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 127/543 (23%), Positives = 215/543 (39%), Gaps = 40/543 (7%) Query: 15 AALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ-HDGWLPVLFGNDERTLNG 73 AAL+ VL+ ++ + + DV+ L + L + Sbjct: 26 AALEALIEDHVLE-REDHLNAPGFVIRADAVQDVLSTLKTEAGFDHLSCVTAE---EHED 81 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + Y L + + D+ + P A W ERE D+ G+ P Sbjct: 82 RFESIYHLRKYDDPTQEVSIIVPTSRDNPVSETAEPVFRTADWHEREAYDLVGVEYDDHP 141 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG---NSDARVIPVGPLH 190 + R++LPD W HPL D + + + + +E +SD + +GP H Sbjct: 142 NLERILLPDTW--QGHPLGLDYNQNKPQIVTFDEHKNPLEGHEQAADDSDTMFLNIGPHH 199 Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC-GICGFA 249 + H +DGEQ+ D + + Y+HR E++A+ +++ DR G G Sbjct: 200 PATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGPGGIL 259 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV--GFDTGFMQFF 307 + AY + E+ I+VP+ A +R++ E+ R+ H+L LG C + F FM Sbjct: 260 NEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIFMYAM 319 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK---EQRLQTLKLVREMRADVSELVEM 364 R RE + E L G R +GGV DI + E + E+ + E ++ Sbjct: 320 RDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDEYSDL 379 Query: 365 LLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTF 408 + + + RT G+LD + A D+R D PY Y + + T Sbjct: 380 ITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPELDWDVVTE 439 Query: 409 TGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--------SYKPHAFALGFV 460 GGD +SR++VR++E S ++E +D + P + V Sbjct: 440 DGGDNYSRLLVRMEEVEQSARIIEQCVDLLEGWPEDERDIQANVPRTLKPEAGTETYRTV 499 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E +GE + +K R++ R+ ++N L+ M G + D +GSLD Sbjct: 500 EGAKGELGVYIRADGTEKPGRFKIRSPCFSNLSALKEMSTGEYIPDLVATLGSLDVILGE 559 Query: 521 TDR 523 DR Sbjct: 560 VDR 562 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 179/552 (32%), Positives = 262/552 (47%), Gaps = 48/552 (8%) Query: 15 AALKTQFPGAVLDEER------QTPEQVTITVKINLLPDVVQ--YLYYQHDGWLPVLFGN 66 A+L+ F VL + T + + +K LP+V++ +L L GN Sbjct: 8 ASLRNYFEERVLKQPEGFSFGLWTKNEGLVWLKPACLPEVMEQLWLKVPSRPLLMTHVGN 67 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 DER+L + +Y L G + + + FPS+T PA W ERE+RD+ G Sbjct: 68 DERSLGHGFVIYLLLHFPGDFTLTLGAR----GIEKSFPSLTLLCPALNWPEREVRDLLG 123 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR----------PEPTTDSETYPFINE 176 L P G PD R LVL W +PLRK + E + + + F Sbjct: 124 LHPDGHPDPRPLVLHPGWTGGFYPLRKPCPETPASIGGECPGEALKEVSFNPQPLSFTEA 183 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 IPVGP+H EPGHFR GE ++ D +LFY H+G+EKL E + E Sbjct: 184 EGEGTFEIPVGPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGK-DLEEGL 242 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + +RVCG+C +H++AY +VE G+EVP+ R++L E+ERL++H+ ++G C Sbjct: 243 KIVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAG 302 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 VGF G + + +E+ + L G R G GGV++ E+R + + E+ Sbjct: 303 VGFALGNVNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQ 362 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP----------------YADYGN 400 D E + ++ QR G+L +Q A DL P + Y Sbjct: 363 DFEEWLPLIQEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDWRERHAHLLYEE 422 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL------DNMPDTPLLTE---GFSYK 451 + GDV+SR+MVRV+E S A+L L D + FS + Sbjct: 423 LKMEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDFLQDTVEQGDFDLNGSGAFSPQ 482 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 P++FA G E+PRG DV W ML D K++R R R+A+YANW + ++GN V D PLI Sbjct: 483 PYSFAWGCAESPRGTDVIWLMLDDEGKIYRCRIRSASYANWAAVPLAVQGNIVPDFPLIN 542 Query: 512 GSLDPCYSCTDR 523 S + CYSC DR Sbjct: 543 KSFELCYSCCDR 554 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 114/570 (20%), Positives = 219/570 (38%), Gaps = 68/570 (11%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ-HDGWLPVLFGND--ER 69 +L ++F + T +++ + N + + V ++ L + D Sbjct: 1 MLEKFSSKFNVL---KHSTTNGLLSVQINPNDIYEAVLFVRDNIGFEILADIVCVDNLYI 57 Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 +++YY +E I + + ++ SV +A WGERE D +G+ Sbjct: 58 DKEKRFSLYYIFRKISSENLCIYIDIDI---NQSVKSVESIYKSANWGERECFDQFGVKF 114 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET-------------YPFINE 176 P+ +R++ D+ +PLRKD + + +D +E Sbjct: 115 ENHPNLKRILNHKDF--QGYPLRKDYPITKYQVLYESDDLVGEMKNEMQRAGLASEENDE 172 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + + +GP H + + +DGE+I+ + Y+HRG EK E Y ++ Sbjct: 173 FKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENH-SYAQII 231 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +DR+ ++V Y +VE ALG+ +P R +R IL E+ R+ H + LG Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G T + + RE+ L G+R T IGG+ D + + L ++++ Sbjct: 292 MGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKDVEK 351 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGN 400 V + + ++ R Q I ++ A DLR D PY Y + Sbjct: 352 GVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYYYDS 411 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS----------- 449 ++ + GD++ R+ VR E +S++++ A+ +P+ + + Sbjct: 412 FDFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKISVDDKDVFLPSKDQVYS 471 Query: 450 ----------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 P+ E GE + +R + R + Sbjct: 472 NIESLINHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYRVKLRPPCFYALN 531 Query: 494 VLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 M++G+ ++D+ L +GSL+ DR Sbjct: 532 AFSSMVQGSLIADSILNLGSLNIIAGELDR 561 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 157/529 (29%), Positives = 260/529 (49%), Gaps = 22/529 (4%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTL 71 AIL +K +L+ ++ + + + + +Y + L LF ND + Sbjct: 5 AILDTIKRLLSSHILESRLINENEIYFCISPSTVKEDCINVYKNIECVLVGLFANDTTPI 64 Query: 72 NGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVG 131 + VYY ++ + + L + S + S+ VPAA EREI DMYG++ Sbjct: 65 DNKLTVYYTFAVRSSNTLITLYSKLENDGSAKVDSIALEVPAASLYEREIHDMYGIVFEE 124 Query: 132 LPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHI 191 LPD R LV ++P D+HPLR++ P F +PVGP+H Sbjct: 125 LPDSRELVHHGNFPLDVHPLRRNFKSNTHLP---FQQRELEFSTITGEGVFEVPVGPVHA 181 Query: 192 TSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHS 251 EPGHFR V GE I++ + +L+YVHRG+EKL E + Y +V S+R+ G F +S Sbjct: 182 GIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQH-YMKVLLFSERISGDETFTNS 240 Query: 252 VAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVR 310 +A+ ++E GI +P+RA R + E+ER+ HL ++ C + QF +R Sbjct: 241 LAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFPSGQFAMMR 300 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 + E L GSR N GG+RRD ++ L+ + ++ + E V ++ Sbjct: 301 RWIQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIILECINKLDKEFKETVAIIKNNGM 360 Query: 371 MEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVF 414 R + GIL+ IA D+R + PYA Y + + + DV Sbjct: 361 FIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAYSKLKFNVPEHSNCDVN 420 Query: 415 SRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 R+ V+++E +S+ +++ L+ MP + P+ + KP+++A G E+PRGE++H+ M Sbjct: 421 CRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAFGMTESPRGENLHFVMT 480 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G+N +FR++ R ++ NWP L + + NT++D PLI S + Y+ D Sbjct: 481 GENNTIFRYKVRTPSFCNWPALCHAVNTNTLTDFPLINKSFNLSYAGND 529 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 406 bits (1044), Expect = e-112, Method: Composition-based stats. Identities = 147/480 (30%), Positives = 231/480 (48%), Gaps = 28/480 (5%) Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D+ YY C +++ +D ++ SVT P A W ERE+ + Sbjct: 4 TGVDKGVAGIRVD-YYFGFDHLEPGCHTILRTFLDRENPVLKSVTTLTPQADWSEREMIE 62 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 G+ PD R L LP +W + M + Sbjct: 63 FLGVRAEEHPDPRHLWLPLNW---------EQMHTDEAAPEKKPQSIQASDHITTMPVST 113 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP H E +F++ V+ E + AD +L + HR + KL E R Y + +L++RVC Sbjct: 114 IPYGPYHPAFIESNYFKMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKD-IYLAERVC 172 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 G+C H++++ +VEN + VP+RA IR+++ E+ER+ SHL+ +G+ VG+ T Sbjct: 173 GLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSHLMAIGILGDLVGYKTML 232 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 MQF R+RE EL+ G R T+GL +GGVRRDI Q + + ++ V L + Sbjct: 233 MQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQSNFVKRKLASLKKGVQTLYD 292 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 +L+ + R + +G+L + A D+R + PYA Y N+ + T Sbjct: 293 EMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLDVRKNTPYAYYENLDWDIVT 352 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL-LTEGFSYKPHAFALGFVEAPRGE 466 G D +RV V+++E S++++E L+ + P + P A ALG E PRGE Sbjct: 353 DNGCDSLARVEVKMREALVSISIVEQCLEKLSTVPPEIITKLEELPCAEALGKTEPPRGE 412 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 ++ R R T+ ++ +L G+ V+D P I+GS+DPCYSCTDRVT+ Sbjct: 413 LLYHVASNGTNTPEFVRIRVPTFMTAYIMLKLLHGSYVADVPAIMGSIDPCYSCTDRVTV 472 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 146/530 (27%), Positives = 251/530 (47%), Gaps = 27/530 (5%) Query: 13 ILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLN 72 ++ L + D T ++ I L V QYL+ D L + D+ Sbjct: 1 MVEELLKPIKDLITDYSFNTENEIVIHTSDFNLAKVSQYLFRDLDCELATVVATDDDDRF 60 Query: 73 GH---YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 + + Y S + + +V+ + F S+ +PA W EREIRDM+GL+P Sbjct: 61 SDDRCFTIRYVYSY-HKKNVFFIVE---NKVKERFNSLANIIPALNWYEREIRDMFGLVP 116 Query: 130 VGLPDQRRLVL-PDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGP 188 + PD R LVL P+++P D+HPLRKD Y + I VGP Sbjct: 117 LNHPDPRPLVLFPENFPSDLHPLRKDFDIKTRPE--FKSYGKYEYKEVEGEGVFNILVGP 174 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 +H EPGHFR + GE I+ + R F+ HRG+EKLAE + EV + +V G + Sbjct: 175 IHAGIIEPGHFRFSLAGEHILQLEIRHFWKHRGVEKLAEGKTA-EEVLEIVPKVSGDHSY 233 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 AH++AY ++E E+P+RA IR + E+ERL +L ++ V + G F Sbjct: 234 AHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFGAQGMFI 293 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 ++E+ M + + L G+R + IGGV D+ +E+ + + + +++ + Sbjct: 294 LKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYKKIIFDS 353 Query: 369 PNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGD 412 ++ R + G + + + D+R +HPY Y + T TF GD Sbjct: 354 ASILDRFETTGRILYETVKELSCIGYTARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGD 413 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 F+R+ R+ + DS+++++ L ++PD + T+ + + LG+ E RG +++ Sbjct: 414 CFARLKCRLSDIEDSISIIKEVLSDLPDGEIFTQSNPLPANRWTLGYSEGQRGNIMYFVK 473 Query: 473 LGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 K+ R + R ++ NW +++ + G+ V+D PL+ SL+ Y+ TD Sbjct: 474 TDKEGKIDRLKIRDPSFNNWQAIQWAVLGDIVADFPLVNKSLNLSYAGTD 523 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 390 bits (1003), Expect = e-107, Method: Composition-based stats. Identities = 125/530 (23%), Positives = 219/530 (41%), Gaps = 34/530 (6%) Query: 23 GAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALS 82 VL T + ++ + + L + + + D + V + L Sbjct: 185 EDVLGVRVYTVGKDHYYAFVDDVKRSAEILAHLGFDNVKDVNVLDVP-HEDTFIVEFTLH 243 Query: 83 MEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPD 142 K + + + + + S++ P++ + ERE+ + +G++ G R L D Sbjct: 244 NYENYK-LVTLAKRISRKNPKVESLSDIFPSSDYMEREMHEFFGVVFEGNKWMGRNFLLD 302 Query: 143 DWPEDMHPLRKDAMDYRLRPEPTTD---------SETYPFINEGNSDARVIPVGPLHITS 193 PLRKD E T D ++ VGP H S Sbjct: 303 V-STPKFPLRKDFRLESQSIEEERPFLQDFDGNLDVTKLPDEFVKGDEYILVVGPQHPGS 361 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 + +DG+ I D YVHRG+EK+AE+R+ + L +R C + + Sbjct: 362 -GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIP-LVERPCITDFANYDIC 419 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 Y ++E ALGIEV +RA IR+IL E+ R+ +HL + G+ F+G TGFM F +RE Sbjct: 420 YVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAGILSIFLGHSTGFMWAFGLREFV 479 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 +L G+R T + GGVR D+ E+ + ++V MR + + +M + P + Sbjct: 480 CEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVREIVLAMRRRLEKFEKMFVKNPTVVA 539 Query: 374 RTQGIGILDRQIARDLRFDHP---------------YADYGNIPKTLFTFTGGDVFSRVM 418 R + +GIL ++ A++L P Y Y + + T GD ++R++ Sbjct: 540 RLENVGILSKKDAKELGIVGPFLRASNVRHDWRLKGYEAYDCVDWDVVTAEEGDSYARLL 599 Query: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----KPHAFALGFVEAPRGEDVHWSMLG 474 VRV+E S+ +++ + ++P + + P + VE RG + Sbjct: 600 VRVEEINQSIKIIDQLVRDLPSGETKVDMWKLTDLVLPLGEFVSCVEGARGTIYMSIVSD 659 Query: 475 D-NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R+R ++ N +G ++D I GS DR Sbjct: 660 GESTTPYRFRIVTPSWYNLRGFVEACKGERLADLQAIYGSFGYFPPEADR 709 >UniRef50_A8A9X2 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Ignicoccus hospitalis KIN4/I RepID=A8A9X2_IGNH4 Length = 540 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 136/536 (25%), Positives = 223/536 (41%), Gaps = 43/536 (8%) Query: 28 EERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAE 87 E ++ + + V+ + L Q + +L D + L + Sbjct: 8 ERKEWSNALYVEVEPQYWYENAARLKDQGYLFPSMLTAVDWPAEKK--VQVFFLVHRIRD 65 Query: 88 KCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRL------VLP 141 +V+ VD ++RE PS++ P W E E +M+G+ G PD R +L Sbjct: 66 ASSVVLSTKVDRENRELPSLSSLYPGVEWHENETYEMFGINFTGHPDYERWGRIRKLLLS 125 Query: 142 DD---WPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG--NSDARVIPVGPLHITSDEP 196 +D +P+D PL KD+ Y+ P+ D + VGP H + P Sbjct: 126 EDPRLFPKDRFPLLKDSGGYKDLPKVNWAEIEGTDQEREGLREDLTYVYVGPQHPATHGP 185 Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTN 256 F L + GE + D RL YVHRG+E + E + Y +V L DR C I G Y Sbjct: 186 VGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKE-YLKVIPLLDRQCYIDGIGWEWPYVM 244 Query: 257 SVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTM 316 ++E + ++V +RA +R + E+ R+ SHLL +G V T F R RE + + Sbjct: 245 ALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTVRDREVFINL 304 Query: 317 AELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQ 376 E+L G R T+ GGV D+ + + K+V +L+E L P + R + Sbjct: 305 LEMLTGQRMTFNYLRPGGVAFDLPQGFKDVYEKVVARFHKHFEKLIETTLDNPTVAMRAE 364 Query: 377 GIGILDRQ----------------IARDLRFDHPYADYGN-IPKTLFTFTGGDVFSRVMV 419 G+ + + +A DLR + PY Y + I + GD R++V Sbjct: 365 GVAQVSAEDAIKYGWSGPNLRASGVAWDLRINKPYGGYDDGIDFEGAVGSVGDNLDRMLV 424 Query: 420 RVKETFDSLAMLEFALDNMPD---TPLLTEGFSYKP----HAFALGFVEAPRGEDVHWSM 472 R +E SL ++ L + + L T P A G+ ++PRGE+ + Sbjct: 425 RFEEIRQSLKIIRQVLRELTERGQNELGTHLKRVPPFPRKPGIAYGYHDSPRGENGILLV 484 Query: 473 LGDN-----QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + +R R+ + + L+Y+ +G + D SLD C + DR Sbjct: 485 ANPSDPKWRTRPWRVHMRSPVFVHTMSLKYLGKGLLLQDFLAFYISLDTCVAEMDR 540 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 132/592 (22%), Positives = 222/592 (37%), Gaps = 83/592 (14%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVLFGNDE 68 G+ ++ LK Q G ++ I L + + L + + D Sbjct: 202 GKDLVKNLKAQLNGLYTSITVTDKNRIAIKTSPENLVETSRKLSDTMGVDHVKSVNVIDV 261 Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVD---ADSREFPSVTPRVPAAVWGEREIRDMY 125 + V Y +S E +++ + E PS+T +A + ERE+ D + Sbjct: 262 P-HERKFMVEYMVSGYTEELMPVILTIFTEIGREAEPEIPSLTSLWESANYSERELHDFF 320 Query: 126 GLIPVGLPDQR-RLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS----- 179 G+ G + + +L D P+ PLRKD + P I + Sbjct: 321 GVKFKGNEGMKGKFLLAPDTPD--TPLRKDFKLEEEQYTIEEGVPLTPTITPPHYMPPSS 378 Query: 180 ---------------------------DARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 D V +GP H S + + + G+ I D Sbjct: 379 SLSYSESELEDLKMPAYEDVLKEAEKNDEFVAFIGPHHSGS-GHLRWVMRMKGDIIKDVI 437 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 YVHR MEK+AE R+ V L++R ++ Y ++ENALGIEVP+RA Sbjct: 438 PDPGYVHRSMEKIAENRLYIQNVP-LTERPNISDPINMNLGYVRAIENALGIEVPERAKY 496 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 IR+I+ E+ R+ + ++G+ F+G TGFM F +RE + + + GSR T + Sbjct: 497 IRTIMAELSRIGAFFYDMGIFPLFMGHSTGFMYSFAIREMVLELMVRMTGSRCTPSFIVP 556 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------ 386 GG+RRDI + +T K + + + + + P + R + +G+L R+ A Sbjct: 557 GGIRRDIPDDVLDRTRKFTTAIHKRLKKYENIFVYNPVLISRMKEVGVLTREEAIRCGIV 616 Query: 387 ----------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD 436 D+R PY Y + T GD R+ R++E S+ ++ A+D Sbjct: 617 GPFLRASGVEYDVRKAEPYEVYDKLDWEATTGDAGDCLGRIFGRLEEMKQSVEIVRQAVD 676 Query: 437 ---NMPDTPLLTEGF---------------------SYKPHAFALGFVEAPRGEDVHWSM 472 MP +++E P EA RG ++ + Sbjct: 677 AVQEMPRGGVISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYSII 736 Query: 473 LGD-NQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R R + N + +G V+D + S DR Sbjct: 737 SDGESNVPYRVRIITPCWMNLRGIIEASKGERVADFWTVYASFGYFPPEADR 788 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 380 bits (976), Expect = e-104, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 215/483 (44%), Gaps = 23/483 (4%) Query: 56 HDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAV 115 +G + V L G ++++ ++ PS TP P A Sbjct: 51 QGCRWAGGWGE---ARGESWVVNALLEKSGDY---LLLRTVLPPGRTGLPSHTPHFPGAA 104 Query: 116 WGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFIN 175 ER RD+ GL +G PD RR V W E PLR D P T +Y F + Sbjct: 105 RPERHTRDLLGLKFIGHPDDRRWVRHQAWGEREFPLRPDFPLAGQPPAVTAPDRSYGFAS 164 Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + IPVGP+H EPGHFR GE +++ + RL YVH+G+EKLA R + Sbjct: 165 AHGPEVNEIPVGPVHAGIIEPGHFRFLALGETVLNLEERLGYVHKGIEKLAVGRDP-EGL 223 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L+ RV G H+ A ++E+A G+ P+RA +R+I +E ER+ +HL ++G C+ Sbjct: 224 ARLAGRVSGDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICN 283 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 F G QF R+RE + G R + GGV D+ E + +R Sbjct: 284 DTAFAFGHSQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALR 343 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 +++ EL +L + + R G G+L + I RD+R P+A Y Sbjct: 344 SELEELKPILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYD 403 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + T GDV +R+ VR +E SL +L+ L + PL + + +A LG Sbjct: 404 RLGVKAVTRGDGDVAARLYVRYEELLASLDILDQCLRRIEPGPLRADWRTPPANAEGLGL 463 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 VE RGE + + R+ R + NWP L ++ GN V D PL S++ YS Sbjct: 464 VEGWRGEIATYVRFDGAGSIVRFFPRDPSVFNWPALEKLILGNIVPDFPLCNKSVNGSYS 523 Query: 520 CTD 522 D Sbjct: 524 GHD 526 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 204/390 (52%), Gaps = 19/390 (4%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 IP+GP H EP +F + V GE+IV RL Y HRG+EK E R Y + +L Sbjct: 1 MSPVTIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEER-SYLQCLYL 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +R+CGIC HS AY +VE G+ +P RA+ IRS++ E+ER+HSHLL LG++ H +G Sbjct: 60 LERICGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 FDT M +R RE M + L G+R YG+N +GGVRRDI EQ V + Sbjct: 120 FDTLLMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEERT 179 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 +E+ P + R G+G L + A RD+R D PYA YG++ Sbjct: 180 KYYIEVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSLD 239 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEA 462 + T DV+ R +VRV E +S M+ L+ +P+ + + P A EA Sbjct: 240 FRVITDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEVSVKAPRKIPAGEACSRYEA 299 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 PRGE H+ K R + RA+T+AN + M+ N ++D P+I+ ++DPC+SC D Sbjct: 300 PRGECFHYIRANGTDKPERVKVRASTFANIQAVAKMMENNNLADVPIIVAAIDPCFSCAD 359 Query: 523 RVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 R + RQ + + E+ R G++ R Sbjct: 360 RCLELLGEGRQ--LMEWSELRRRGVEWYRR 387 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 377 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 156/523 (29%), Positives = 242/523 (46%), Gaps = 29/523 (5%) Query: 18 KTQFPGAVLDEERQ-TPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYA 76 + F + + + + V + L V L + + L LF Y Sbjct: 14 QEIFGSGISGRLAYGSSRECILDVNADELDRAVPGLAAR-NFVLSALFATPVY-AGEGYI 71 Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQR 136 + Y S G+ ++ + ++ S+ P+A W ERE RDMYG+ G D R Sbjct: 72 LRYVFSHAGS-----ILVLSRALNRKQATSIATIFPSATWPERECRDMYGIKFEGAFDTR 126 Query: 137 RLVLPDDWPEDMHPLRKDAMDYRLR-PEPTTDSETYPFINEGNSDARVIPVGPLHITSDE 195 RLVL + P +PL K + + + +E YPF +PVGP+H E Sbjct: 127 RLVLHETCPAGFYPLEKSVKNAPVATKKTVPPAEEYPFRTVSGDGVYQVPVGPVHAGIIE 186 Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 PGHFR V GE + + + RLFY HRG+EKLAE + +++ V G A++ Sbjct: 187 PGHFRFSVIGETVFNLEIRLFYTHRGIEKLAEGKDPA-ACVRVAEAVSGDESAANATGLC 245 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMT 315 ++E GI VP RA IR++L E ER+ SHL +L V F G F +RE+ Sbjct: 246 MAIERLSGITVPDRAWHIRTVLCESERICSHLGDLSGMLTDVAFALGASHFAVLREEFFR 305 Query: 316 MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 E L GSR G+ L GG+ RDI E + + + + + ++L+TP++ R Sbjct: 306 EQEKLSGSRFLRGMILPGGISRDIPVETLARYREFLARFAKEFRAGLAIVLSTPSVIDRF 365 Query: 376 QGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMV 419 GI+ + + RD+R D PY Y GDV +R V Sbjct: 366 TQTGIIRKPLLGPLNITGPVARASGSGRDVRVDSPYGMYDRFIPVPHPLNDGDVLARFTV 425 Query: 420 RVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 + E DSL+++E + MP+ P+++ AL VE PRGE++ W + + ++ Sbjct: 426 KAAEVLDSLSLIEKVIAGMPEGPVISADG--VGDGAALALVEGPRGENLCWVEIRE-GRV 482 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 FR++ R A+Y NW + + GN ++D P+I SL+ Y+ TD Sbjct: 483 FRYKVRTASYCNWLAIEHAAPGNIIADFPVINKSLNLSYAGTD 525 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 149/536 (27%), Positives = 236/536 (44%), Gaps = 34/536 (6%) Query: 9 RGEAILAALKTQFPGAV--LDEERQTPEQVTITVKINLLPDVVQ---YLYYQHDGWLPVL 63 + + L A+ L E+ + + + + L G L L Sbjct: 2 KIPELHNYLAEFLSPAINPLKLEKGANKDYYLWL---DWTEAAALYPKLAEDGFG-LIGL 57 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 FG + ++ Y ++++ S+ P+A + EREIRD Sbjct: 58 FGVEGFRGYQGLSLLYIFEKRNYSGTLVIIR----RADSPVSSIAAIFPSACYFEREIRD 113 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR-PEPTTDSETYPFINEGNSDAR 182 YG D+RRL L + +P + HPL + L P + YPF Sbjct: 114 GYGCEFENAFDRRRLFLHETYPANFHPLANSFKNQPLSLPAGVENEALYPFKKISGEGVY 173 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + VGP+H EPGHFR GE I++ + RLFY HRG+EKLA + + +++ + Sbjct: 174 EVGVGPVHAGIIEPGHFRFSAIGEPILNLEVRLFYTHRGLEKLAMGK-DIDFGLKIAEGI 232 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 G A++ AY+++VE+ P+RA +R ILLE+ERL+SHL +L VG+ G Sbjct: 233 SGDESAANTYAYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVG 292 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 +RE+ M + L GSR G+ GG+ +DI E + + SE V Sbjct: 293 AASLSALREELMRWNKRLTGSRFLKGIIAPGGLLKDIPGELITELADYLYAFEGRFSEQV 352 Query: 363 EMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNIPKTLF 406 E LA ++ R + GI++ ++ A D R + PY Y + L Sbjct: 353 EKALAKTSVVDRFETTGIVNNRLLIPLNITGVTARASGEAIDTRLNQPYGFYPELSFKLP 412 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 GDV +R VR+ E SL ++ + + ++L VE+PRG+ Sbjct: 413 VLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAGEYAIPLKPV--NGYSLVLVESPRGQ 470 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +HW L D K+ R++ R A+Y NW + + + G+ + D PLI SL+ Y+ TD Sbjct: 471 SLHWLWLRD-GKIERYKVRTASYCNWQAIEHAVLGDIIPDFPLINKSLNLSYAGTD 525 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 103/364 (28%), Positives = 171/364 (46%), Gaps = 19/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +S+ V+ +GP H ++ L +DGE+++ + + Y+HRG+EK+AE R Y + Sbjct: 19 DSNELVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRT-YVQFNP 77 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 DR+ + ++ + Y +VE + ++ P RA +R IL E+ RL SH++ LG + Sbjct: 78 YVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDI 137 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G T FR RE+ + + E G+R T IGG + + L ++ Sbjct: 138 GALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDYCDKLGPR 197 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 + E +L QRT+GIGIL+ DLR PYA Y + Sbjct: 198 IDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQPYAAYDQV 257 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFALGF 459 + T GD F R MVR++E S+ +L A++ +P P + + P Sbjct: 258 DFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPKVLKPPVGRIYHS 317 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +EAP+GE ++ + + + +R R R ++ N L M+RG ++D +IG+LD Sbjct: 318 IEAPKGELGYFIVSDGSLQPYRVRVRPPSFVNLQALDKMVRGALIADVVAVIGTLDIVLG 377 Query: 520 CTDR 523 DR Sbjct: 378 EVDR 381 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 132/505 (26%), Positives = 224/505 (44%), Gaps = 21/505 (4%) Query: 35 QVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLN-GHYAVYYALSMEGAEKCWIVV 93 + ++ L L+G + + +A+Y ++ E ++ Sbjct: 31 MPCLEIRRLDWAHAACEARR-LGMRLVALWGAEAGCHDRDAHAMYAYMAFAHPEHRHTLL 89 Query: 94 KALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRK 153 + + A++ E PS++ AA ER ++DM+G+ +PD R + + WP + +PLR Sbjct: 90 RTPLAAENPELPSISGHYIAACRMERHMQDMFGIHITDIPDPRPWIKHEHWPREAYPLRV 149 Query: 154 DAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADY 213 D P Y ++ G+ IPVGP+H EPGHFR GE I++ + Sbjct: 150 DFDAR--PPLLAEAHGDYDYVRSGSEGVYEIPVGPVHAGIIEPGHFRFLAVGEHILNMEE 207 Query: 214 RLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTI 273 RL YVH+G+E+ +++ E ++ R+ G AH+ A+ + E A I+VP+RA I Sbjct: 208 RLGYVHKGIERAMQSKSA-EEGLKVASRISGDSTVAHAWAFAQACEYAGQIDVPRRASFI 266 Query: 274 RSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIG 333 R+IL E ER+ +H+ ++G C+ F Q R+RE + L G R + G Sbjct: 267 RAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLREDMARLHLELFGHRLLMNTLIPG 326 Query: 334 GVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL---- 389 GV D+ + + + +V L + P+++ R G G++ + A+D+ Sbjct: 327 GVLVDLGERAIGLLREQTLAIANEVEHLRAIYADHPSIQGRVIGSGMVPVEDAQDIGLLG 386 Query: 390 ------------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN 437 R + YA Y + + GDV +RV VR +E +S ++ L+ Sbjct: 387 YVGRASGHYPDERIEEAYAPYDELEVNVPQGKLGDVATRVWVRFEEIAESSRLISELLEK 446 Query: 438 MPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 MP+ P++ +P +E RGE W G+ ++ R R + NW L Sbjct: 447 MPEGPIVANWLPPEPGVSGFAAIEGWRGEIAAWVRFGEGGQIDRCFVRDPSVINWLGLEL 506 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTD 522 +R V D PL S + YS D Sbjct: 507 AVREVPVPDFPLNNKSFNCSYSGND 531 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 365 bits (937), Expect = 3e-99, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 20/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 ++ ++ VGP H ++ + +DGE I +A + Y+HRG EKLAE + Y ++ Sbjct: 19 RTEEMLLNVGPQHPSTHGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAEN-LTYTQIIP 77 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ + ++ ++VE +G+E+P+RA +R I +E+ R+ SHL+ G + Sbjct: 78 YTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGTFLLDI 137 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G F+ FR RE + + L G+R T+ +GGV+ D + + V+ M+ + Sbjct: 138 GAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFVQYMKKE 197 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 ++ +++ R GIG D + A DLR D PY Y Sbjct: 198 LNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVKWDLRKDEPYCIYDRF 257 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS---YKPHAFALG 458 + T T GD +R +R+ E SL +LE AL+ P + P Sbjct: 258 EFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVMGKVPRVIRPPAGETYV 317 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 +E+PRGE + K +R + R ++ N +L +L+G +S+ I+GS+D Sbjct: 318 RIESPRGEIGCYIASQGKDKPWRLKFRRPSFTNLQILPKLLQGENLSNMVAILGSIDIVL 377 Query: 519 SCTD 522 D Sbjct: 378 GEVD 381 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 365 bits (936), Expect = 4e-99, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 19/365 (5%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 ++ +GP H ++ L + GE+I A L Y+HRG+EKL E+R Y + Sbjct: 1 MAEKSTYILNMGPQHPSTHGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT-YAQC 59 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +D++ + +++A+ +VE GI VP RA +R I E+ R+ SHL+ +G + Sbjct: 60 LPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTLLN 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T F+ FR REK + + +L+ G+R + +GGV D +E +T + + Sbjct: 120 DLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVAFDATEEFIEKTQAFLDYVP 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYG 399 + E ++ R +G+ + + +A D+R PY+ Y Sbjct: 180 EMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRVEPYSVYD 239 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFAL 457 + + T GD + R VR+KE +S ++ AL MP+ P Sbjct: 240 RLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEGSCRKVVSPNLRPPKGSVY 299 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 VE RGE + + K +R R ++ N L + RG V+D+ ++ +LDP Sbjct: 300 HRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVYSTLDPL 359 Query: 518 YSCTD 522 D Sbjct: 360 MGEVD 364 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 364 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 101/399 (25%), Positives = 175/399 (43%), Gaps = 48/399 (12%) Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 I + + V+ +GP H + +GE++++ + Y+HRG+EKL+E++ Sbjct: 4 TEIEKVSDTTFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKT- 62 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 Y L+DR+ I +++ Y +VE +GIE P RA IR+++ E+ RL SHLL L Sbjct: 63 YPGAMTLTDRLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWLA 122 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 +G T F+ FR RE+ + E + G+R T IGGVR DI + + K + Sbjct: 123 THALDIGAMTVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIYKFM 182 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPY 395 M V E +L RT+G+G++ + A D+R PY Sbjct: 183 DLMLIRVDEYETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGVYYDIRKQIPY 242 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------ 449 Y I + GD + R + R++E S+ +++ ++ MP+ +L++ Sbjct: 243 DAYSEIDFEVPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKSPDIDLPH 302 Query: 450 -------------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 P +EAP+GE + + + + +R R Sbjct: 303 QAKRKIEPGDSLWNGFIAFSEEKQEIMPKGEIYSAIEAPKGELGFYIVSDGSGRPYRMRV 362 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RA ++ + + + G+ ++D IIG+LD DR Sbjct: 363 RAPSFIHISAIPKLCEGHLLADVIAIIGTLDIVMGEADR 401 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 129/401 (32%), Positives = 210/401 (52%), Gaps = 24/401 (5%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 + IPVGP H + EP +F L VDGE I AD +L Y HRG+E+ ++ Sbjct: 1 MSEDVSGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLEN 60 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +L +R+CGIC AH+ ++ VE+ L ++VP+RA+ IR+++ E+ER+HSH+L LG++ Sbjct: 61 -IYLLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAG 119 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 H +GFDT + +R RE + + E + G+R Y +N IGGVR+D+ EQR L+ + E+ Sbjct: 120 HEIGFDTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDEL 179 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADY 398 + +E + + R + +G + ++AR D+R D PYA Y Sbjct: 180 EERIDFYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAAY 239 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY------KP 452 + + T T GD+ +R VR++E +S++++ A ++PD L P Sbjct: 240 DEMDFDVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKASPKPVQALLAQIP 299 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 + EAPRGE +H+ R R T ANWP + LRG+ ++D P+++ Sbjct: 300 EDDVVSRYEAPRGELIHYIRADGTDTPERVHIRVPTLANWPTVVEALRGSYIADTPIVVA 359 Query: 513 SLDPCYSCTDRVTL-VDVRKRQSKTVPYKEIERYGIDRNRS 552 +DPC SCT R+ + D + +E+ YG++ Sbjct: 360 GIDPCISCTSRIGVETDGSHGGEDSFNLEELREYGMEWYDK 400 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 363 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 119/394 (30%), Positives = 205/394 (52%), Gaps = 21/394 (5%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 S +PVGP H +E +F++ +DGE++VD + ++HRG+EK++E +++ F+ Sbjct: 2 SKEFNLPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEE-STFDQSIFV 60 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +R+CGIC +H A N+ E+ IEVP +A IRS++ E+ER+HSHLL LGL+ HF+G Sbjct: 61 VERICGICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGHFIG 120 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 +DT +M ++ RE + + E++ G+R YG IGGVRRD + + + + Sbjct: 121 YDTLWMWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKL 180 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIP 402 + + + + P + R G+G+L ++ +A D+R D PYA Y + Sbjct: 181 TMVAKAVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLD 240 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM-PDTPLLTEGFSYKPHAFALGFVE 461 + GD+F++ +VR+ E F+S+ M+ ++ + + P +G E Sbjct: 241 FGVVVREEGDIFAKTVVRILEVFESIKMIRQIIEKLRKVKGPIYNDVKEIPAGEGIGRHE 300 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 APRGE H+ + + R + RA +Y N P + G ++D + + S+DPCY CT Sbjct: 301 APRGEVFHYIRTDGSNRPVRHKIRAPSYVNIPTYKASCIGENLADVLITLASVDPCYCCT 360 Query: 522 DRVTLVDVRKRQSKTVPYKEIERYGIDRNRSPLK 555 +R + K T + + D+ +K Sbjct: 361 ERSVRLQTEKGMEITSN---LLKLSQDKTDRLIK 391 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 362 bits (930), Expect = 1e-98, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 173/397 (43%), Gaps = 47/397 (11%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 + +GP H + L ++GE I + Y+HRG+EKL+E + Y Sbjct: 2 QNKIKTVKELTVNMGPQHPATHGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSED-LTY 60 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + ++DR+ + ++V + +VE +GI++P+RA IR+I+ E+ R+ SHL+ + Sbjct: 61 VQSLPITDRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWIAT 120 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 +G T F+ R RE + + E++ G+R T +GGVR D+ E +T K + Sbjct: 121 HALDIGAMTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIE 180 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 E V E ++ +RT+G+G++ + A D+R PY Sbjct: 181 EFPRKVEEYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYD 240 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--SYKPHA 454 Y + + GD++ R R+ E S +++ ++ +PD +L E P + Sbjct: 241 AYDKVDFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILAENALRIRMPES 300 Query: 455 ----------------------------FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 VEAPRGE + + ++ K +R R RA Sbjct: 301 PLKIDKKDIIFDVYIEDKQIQEFIQKFTEVYASVEAPRGELGFYIVCDNSSKPYRMRVRA 360 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ + VL + G+ V+D IGS+D DR Sbjct: 361 PSFVHAGVLPKLCEGSLVADVIANIGSIDIVLGECDR 397 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 360 bits (924), Expect = 9e-98, Method: Composition-based stats. Identities = 102/396 (25%), Positives = 172/396 (43%), Gaps = 45/396 (11%) Query: 171 YPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRM 230 P N+ ++ +GP H ++ L +DGE + D + Y+HRG EKLAE+ Sbjct: 9 RPEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAES-F 67 Query: 231 GYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 Y ++ L+DR+ +C ++++A+ +VE LGIE P RA IR ++ E+ R+ HLL Sbjct: 68 TYTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLIT 127 Query: 291 GLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 G +G T + R RE M + E++ G+R +GGVR D+ + + Sbjct: 128 GALPMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFFPKIREF 187 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP 394 + + +L RT+GIG++ + A D+R D P Sbjct: 188 CDIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWDIRRDEP 247 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS----- 449 Y Y + + T GD ++R RV E +S+ ++E +D MP+ P + + Sbjct: 248 YEIYDRLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPEGPFQIDMPTIAFPL 307 Query: 450 -----------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 P +EAP+GE + + + K FR + RA Sbjct: 308 DKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFYIISDGSPKPFRMKVRA 367 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ N L + ++D ++GSLDP + D Sbjct: 368 PSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVD 403 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 360 bits (924), Expect = 9e-98, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 161/398 (40%), Gaps = 45/398 (11%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 E + D + +GP H ++ ++ ++GE + AD + Y+HRG EK+AE Sbjct: 30 PPDEGGEFSGDRMSLSMGPSHPSTHGVLRIQMELEGEILTKADPIIGYLHRGDEKIAEN- 88 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 M YN+ +DR+ + A+++AY +VE G+ VP R IR I E+ R+ SHL+ Sbjct: 89 MTYNQFVPYTDRLDYLAPLANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMG 148 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 LG VG T + RE + E L G+R T IGGV RD+ Sbjct: 149 LGAFGLDVGAWTVLVLSLNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGT 208 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDH 393 + + E++ +L RT G+G++ ++ IA DLR D Sbjct: 209 FCDKFLPALEEILSLLTRNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDR 268 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-- 451 PY+ Y + T GD + R +VR +E S+ ++ + N P Sbjct: 269 PYSGYEQYEFDVPVGTKGDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEAKKVFL 328 Query: 452 --------------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 P E P+G + + +R + R Sbjct: 329 PPKGKVLSSMEELIQQFMLVTEGPQMPAGEVYFEAENPKGILGFYIVSKGGGVPYRLKIR 388 Query: 486 AATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + ++ N ++ + +G +SD I+GSLD DR Sbjct: 389 SPSFCNLSLVPKLCQGVLISDVVAILGSLDFVMGECDR 426 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 88/367 (23%), Positives = 163/367 (44%), Gaps = 23/367 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + + GP H + ++ +DGE + D + + Y+HR EK+ E + + + + Sbjct: 4 EEWTEVNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYF 63 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 DR+ + + Y + E L +E P RA IR ++ E+ R+ SHL+ LG +G Sbjct: 64 -DRMDYVAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLG 122 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 T F F+ REK + + + GSR+ IGGV +D+ E + + E ++ Sbjct: 123 MLTPFFYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKQFITEFPKEL 182 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + + + + RT+G+GIL +++A D+R PY Y + Sbjct: 183 NMIANLFVKNDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVN 242 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------PHAFA 456 + GD +R +VR++E S+ +++ + +P P + Sbjct: 243 FDIPVSFKGDNLARFLVRIEEMRQSVKIIDQTIQKLPAGPYFNQKAKKPLMIRLRGQGEV 302 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDP 516 E+P+GE + + + + +R R R+ T+ N VL + +G ++D I GS+D Sbjct: 303 YARTESPKGEFGVYIVGDGSLRPYRVRVRSPTFKNLSVLPALAKGQMIADLISIGGSIDL 362 Query: 517 CYSCTDR 523 + DR Sbjct: 363 VFGEVDR 369 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 359 bits (922), Expect = 1e-97, Method: Composition-based stats. Identities = 149/506 (29%), Positives = 227/506 (44%), Gaps = 39/506 (7%) Query: 39 TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVD 98 TV L + V L + L ++ +D+ V Y L + G + + Sbjct: 9 TVSDAELAESVAELLAEGY-RLALVAAHDDGDA---LRVVYLL-VAGQPDRRVELTLRTG 63 Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 A + PS+ A ERE+ D+YG+ PVG P RRLV WP+D HP+R+DA D Sbjct: 64 AANPSVPSLAELSIPAGRFEREMMDLYGISPVGHPQPRRLVRHAHWPQDWHPMRRDAGDP 123 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 +PF+ IPVGP+H EPGHFR V GE I+ RL++V Sbjct: 124 PP----FDAVGRFPFVTVEGPGVYEIPVGPVHAGLIEPGHFRFSVIGESILRLKARLWFV 179 Query: 219 HRGMEKLAETRMGY--NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 HRG+EKL E R E L++R+ G AHS+A+ +VE+ALG++VP+ H +R++ Sbjct: 180 HRGVEKLFEGRNALGAREAVELAERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRAL 239 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 L+E+ERL++H+ +LG + VGF +RE+ + + + G R GGV Sbjct: 240 LVELERLYNHVTDLGALANDVGFALANAHAQGIRERVLRINRRVTGHRLLRAAMAPGGVV 299 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------- 387 L + + + A+V+E+ E+ L + R +L + AR Sbjct: 300 LQELPDPAE-----LHAVAAEVAEISELTLRNSVVYDRFAETAVLHSEDARALGCLGYVA 354 Query: 388 -------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 D R DHP A +P T GGDV +R +R E S+A+ ++N Sbjct: 355 RASGIATDARLDHPTA---ELPVTAVAAGGGDVLARYTIRRDEFAASVALACHLVENHHG 411 Query: 441 T----PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR 496 P + +G VE RG +H + ++ R + ++ NWP L Sbjct: 412 RTRFAPPPAANGARSAVTSGVGIVEGWRGAVLHRVEVDGAGRITRCKIVDPSWFNWPALP 471 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTD 522 + V D PL S + Y+ D Sbjct: 472 VAMADTIVPDFPLANKSFNLSYAGND 497 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 126/522 (24%), Positives = 211/522 (40%), Gaps = 43/522 (8%) Query: 42 INLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADS 101 + L +V++ L + D N Y+ + G + W+ V D ++ Sbjct: 31 KDDLLNVIKDLKQAGVKTCSTVSPTDFIDENKIEVNYFLEDLFGKKNVWLKVDIERDLEN 90 Query: 102 REFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR 161 E S+TP +P+A W E E +G+ G PD R ++ D+ P RKD Sbjct: 91 CEIDSITPLMPSANWHELEAYSTFGVKFKGHPDLRYFLISRDYY-GKFPFRKDFDWKAHE 149 Query: 162 P-----------EPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVD 210 E + E + V+ GP H S P +++ +GE I Sbjct: 150 ENLIQNINDITEEYFEEYEEHEEKLGHEGSRTVLNWGPTHPAS-GPIRLKVYTNGENIEK 208 Query: 211 ADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRA 270 + + YV R +E LAE R + +R+C + + Y+ +VE G E+ + A Sbjct: 209 IEPDIGYVWRALEHLAE-RKDFIGTIVAVERICFMDNPNPMICYSQAVEEIAGKEITEFA 267 Query: 271 HTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLN 330 +R IL E R+ SHL++LG +G T M +RE + + E G+R Sbjct: 268 KYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLDIREYFLDVLEDYSGARIATACV 327 Query: 331 LIGGVRRDILK--EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG--------- 379 GGVR + K +++ +++ ++ + P M R +G G Sbjct: 328 EPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFMKNPLMNTRAKGNGVFTLDDVAE 387 Query: 380 -ILDRQIAR------DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLE 432 L IAR D+R D PYA Y + T GD R+ + KE ++ +++ Sbjct: 388 YYLAGPIARASGAKIDVRIDEPYAAYDKLEMEYATCENGDARDRLYIIFKELEQAMDLIK 447 Query: 433 FALDNMPDT----------PLLTEGFSYKPHAFALGFVEAPRGE-DVHWSMLGDNQKLFR 481 A+ + + L + P A+ +E RGE +H + +R Sbjct: 448 QAMAKIEEGIEAGEMDPKKDHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEKSTSPYR 507 Query: 482 WRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +A + + +L +LRG T+SD PL+ GS+ C DR Sbjct: 508 LKIKAPSVNHTMMLDKLLRGKTLSDIPLLYGSMHICQGDLDR 549 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 357 bits (917), Expect = 6e-97, Method: Composition-based stats. Identities = 134/500 (26%), Positives = 209/500 (41%), Gaps = 26/500 (5%) Query: 39 TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVD 98 + + + Q + Q L ++G + T + +A + E ++ + Sbjct: 37 RLAADYWQQLGQRIRQQGG-RLLGIWGEHQDTAGANI---HAFFL--TESGYLWCTLPLP 90 Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 A+ REFPS++ P A ER IRD+ GL P+G PD R + WP ++HPL + Sbjct: 91 ANLREFPSLSSVFPTACRQERAIRDLLGLEPLGNPDMRPWLRHAAWPANIHPLAMSDIPE 150 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 + Y + D IPVGP+H + EPGHFR GEQIV + RL Y Sbjct: 151 DI--LSCAGEIDYSYRAPAGQDLHEIPVGPVHAGTIEPGHFRFTCLGEQIVQLEERLGYC 208 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 H+G+E+L + + L+ RV G A++ +Y +VE+ IE+ QRA +R + L Sbjct: 209 HKGIERLFVGQPP-DAALRLAGRVSGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCL 267 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E ERL +HL +LG + G Q ++E+ + + G R + +GGV D Sbjct: 268 ERERLANHLGDLGALGNDAGLAFALTQLLAIKEELLRENAEIFGHRYLMDVVQLGGVAVD 327 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ-------------- 384 + + + R + L +L + R G + + Sbjct: 328 LDGRALQHIEQSSKAWRRRLETLDLLLQEHAGLRDRLVATGPITAERAAYWGMAGLSGRA 387 Query: 385 --IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 A DLR Y P + GDV +R VR E F L E + N+P Sbjct: 388 SGQAWDLRTHFAPPPYDRYPMEISLARRGDVAARWAVRFAEVFRCLRWQENVVANLPGGS 447 Query: 443 LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 ++ LG E RGE L ++ + R +++ WPVL + + Sbjct: 448 PRVALKAFPKDGEGLGICEGWRGEVFVALRL-EDGHIARCHPHDPSWSLWPVLEEAVCQD 506 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 V+D PLI S + YS D Sbjct: 507 IVADFPLINKSFNLSYSGQD 526 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 357 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 167/364 (45%), Gaps = 19/364 (5%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 ++ + +GP H ++ L +DGE++V + + Y+HRG+EKLAE R Y +V Sbjct: 9 RTEEIQLNMGPQHPSTHGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRT-YTQVIP 67 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ + G +++ Y +VE LG+EVP+RA +R I+ E+ RL SH++ + + Sbjct: 68 YTDRLDYLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMVMVASMALDL 127 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 T + FR RE+ + + E+ GSR T IGGV DI + ++ Sbjct: 128 SGWTAWFPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADIPPGFLPALESFLNDLPRM 187 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 ++E+ ++ + R QG+G +D + A DLR PY+ Y Sbjct: 188 IAEMNGLITGNEIFKARCQGVGKIDLETALAYGITGPNLRACGLPFDLRKARPYSIYDRF 247 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFALGF 459 + T GD + R ++R+ E S ++ A++ +PD P+ + P Sbjct: 248 DFDIPTLNNGDSYDRFVIRLLEMEQSARIIRQAMEQLPDGPVQAKVPRVLKLPRGEVYHQ 307 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYS 519 +E +G + + K +R + ++ N L + G T+ D + I S+D Sbjct: 308 IEGAKGILGFYLVSDGGSKPYRLHIHSPSFVNLGALPRISVGGTIQDFVVNIASIDIVLG 367 Query: 520 CTDR 523 DR Sbjct: 368 EVDR 371 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 93/431 (21%), Positives = 160/431 (37%), Gaps = 45/431 (10%) Query: 136 RRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDE 195 R+ +W + +P ++ + + GP H + Sbjct: 35 RQWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDV-DPPKDTIVKNITLNFGPQHPAAHG 93 Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 + + GE + D + +HRG EKL E + Y + DR+ + + AY+ Sbjct: 94 VLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKT-YLQALPYFDRLDYVSMMCNEQAYS 152 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMT 315 +VE L I P RA IR + E+ RL +H++ + +G T F F REK Sbjct: 153 LAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFE 212 Query: 316 MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRT 375 E + G+R GGV +D+ + + + EL E+L RT Sbjct: 213 FYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRT 272 Query: 376 QGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMV 419 IG++ + A DLR PY Y + + + GD + R + Sbjct: 273 IDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLC 332 Query: 420 RVKETFDSLAMLEFALDNMPDTPLLTEGFSY---------------------------KP 452 RV+E SL ++ L+ MP + + P Sbjct: 333 RVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVP 392 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 +EAP+GE + + + + +R + +A +A+ L M +G+ ++D IIG Sbjct: 393 PGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIG 452 Query: 513 SLDPCYSCTDR 523 + D + DR Sbjct: 453 TQDIVFGEVDR 463 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 356 bits (913), Expect = 1e-96, Method: Composition-based stats. Identities = 105/413 (25%), Positives = 178/413 (43%), Gaps = 47/413 (11%) Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 D + P+ ++ E S+ + VGP H ++ + + GEQI+ + Sbjct: 4 DPQKLHSPSVEAYDIADAPELKSEVMTLNVGPQHPSTHGVLRVVVDLSGEQILRLTPHIG 63 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 Y+H G EK E R Y + + R+ + F+H +AY SVE +G +VP RA IR + Sbjct: 64 YLHTGFEKNMEHRT-YTQCITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVM 122 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 L E+ R+ SHL+ LG G T F FR RE + + E + G R + IGG++ Sbjct: 123 LNELSRIASHLVFLGTGLLDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLK 182 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA---------- 386 D+ E + K + +M A + E + +P +R +G+ ++ ++A Sbjct: 183 EDLPPEFLGEVKKFIAQMPARIDEYEALFRESPIFYERARGVAVIPPEVAINLSLTGGSL 242 Query: 387 ------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP- 439 D+R +PYA Y + TGGDVF R+++R+ E +S+ ++ A++ + Sbjct: 243 RASGVNYDVRKAYPYAGYETYDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVERLEA 302 Query: 440 --DTPLLTEGF--SYKPH-------------------------AFALGFVEAPRGEDVHW 470 P+ S P E+ RGE ++ Sbjct: 303 LGPGPIRDPNPQISLPPRHLLETSMEAVIYHFKLVTEGFHPALGEVYVPTESARGELGYY 362 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + +R + RA ++ N L Y +G ++D ++I SLDP DR Sbjct: 363 IVSDGGSMPYRVKVRAPSFVNLQSLPYACKGVQMADMVVVIASLDPVMGDVDR 415 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 124/461 (26%), Positives = 205/461 (44%), Gaps = 29/461 (6%) Query: 78 YYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRR 137 Y ++ + V +FPSV P+A ER + D++GL G D R Sbjct: 87 VYLALLDRGGSKISLFGLQVPE--GKFPSVAVAYPSAARLERALYDLFGLQAQGSLDSRP 144 Query: 138 LVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPG 197 + W P + + Y F +PVGP+H EPG Sbjct: 145 WLDHGKWGVRF---------PMGDSYPDGEEKLYSFFPARGESLHQVPVGPVHAGIIEPG 195 Query: 198 HFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNS 257 HFR + GE +V + RL Y H+G+E L ++ ++ R+ G A++ Y + Sbjct: 196 HFRFTMSGEIVVRMEERLGYTHKGIESLFSG-ASIDKGMEIAGRISGDSTVAYAYGYALA 254 Query: 258 VENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMA 317 VE ALGI P RA IR+++ E+ER+ +H ++G C+ F + +REK + A Sbjct: 255 VEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAFPRILSRCALLREKILRCA 314 Query: 318 ELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQG 377 + G R ++GGV+ D+ E + +L+ ++ +V L + + +++ RT G Sbjct: 315 QSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVVCLKDFYDSKNSLQDRTVG 374 Query: 378 IGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRV 421 G+LDR++A D R Y Y ++ + GDV +RV +R+ Sbjct: 375 TGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSFEVPVLEDGDVNARVWIRI 434 Query: 422 KETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFR 481 E S+ +LE L+ MP + E + L VE+ RG+ + W + N K+ R Sbjct: 435 LEIEQSVKLLEQILEGMPPGSICAERIGGEGSGKGLSVVESFRGDILTWIEI-YNGKIIR 493 Query: 482 WRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 R ++ WP+L ++ G ++D PL S + YS D Sbjct: 494 CHPRDPSWFQWPLLEKVIVGGVIADFPLCNKSFNCSYSGHD 534 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 355 bits (911), Expect = 3e-96, Method: Composition-based stats. Identities = 101/370 (27%), Positives = 177/370 (47%), Gaps = 22/370 (5%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 NE +++ + +GP H ++ +L VDGE I A + Y+HRG EKLAE + Y Sbjct: 2 PNELKTESMTLNMGPQHPSTHGVFRLQLEVDGETIQKATPIMGYLHRGSEKLAEGFL-YT 60 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + +DR+ + ++ Y ++E L EVP+RA +R I +E+ R+ SHL+ G Sbjct: 61 QFIPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHLVWWGTY 120 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G + F+ FR RE + + G+R T+ + IGGV+ D + L+ V E Sbjct: 121 LLDIGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWIDNVLETVEE 180 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397 ++ ++SE ++ + RT G+G+L ++ + D+R PY+ Sbjct: 181 LKHNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVDVRKTEPYSV 240 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL-----TEGFSYKP 452 Y + + GDV++R VR++E +SL ++E A N+P+ ++ P Sbjct: 241 YDHFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIHKKGKKIMMIKPP 300 Query: 453 HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIG 512 EA +GE +++ K +R + R ++ N +L+ ML G ++ + I G Sbjct: 301 EGEVYTRAEASKGEIGVYAISNGKNKPYRVKLRRPSFVNVSILQDMLIGESIQNLVAIFG 360 Query: 513 SLDPCYSCTD 522 SLD D Sbjct: 361 SLDVVLGEVD 370 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 355 bits (910), Expect = 3e-96, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 171/395 (43%), Gaps = 45/395 (11%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 V+ +GP H ++ RL ++GE ++ D + Y+HRG+EKL E+ Y Sbjct: 16 RQITPTRRELVLNMGPQHPSTHGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHR-Y 74 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + +DR + ++++ Y +VE GI+ P+RA R I+ E+ R+ SHL+ LG Sbjct: 75 AQFVPWTDRTDYVAAPSNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGT 134 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 +G + + FR RE + + E G+R T + IGG R+I + + R Sbjct: 135 HALDIGALSVSLYTFRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCR 194 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 + + ++L P RT+G+G+++ +A D+R PY Sbjct: 195 YFPKAIRQYEDLLTENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYL 254 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSY----- 450 Y + + T GDV+ R +VR++E +L ++E L+ +P D PL+ Y Sbjct: 255 LYDRVEFEVPLGTHGDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLMAYESPYVIPPH 314 Query: 451 ----------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P VE +GE ++ + + +R R R Sbjct: 315 KTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGELGYYIVSDGSPIPYRVRIRTPD 374 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + N L YM +G ++D +IG++D DR Sbjct: 375 FVNLQSLPYMAQGAMLADIVALIGTIDIVLGSVDR 409 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 354 bits (909), Expect = 5e-96, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 174/372 (46%), Gaps = 28/372 (7%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + I +GP H ++ + VDGE IVD Y+HR E+LAE Y + Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAE-VSTYIQSMP 61 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 +DR+ A++ A +VE GI VPQRA IR +++E+ R+ +H +G + + Sbjct: 62 YTDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDM 121 Query: 298 GF-DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 G T M R REK + + E+ G+R GGV RD+ E Q +L++ + + Sbjct: 122 GAWQTPLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPS 181 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGN 400 E +L + RT +G+L +++A D+R PY+ Y Sbjct: 182 FFDEFERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDE 241 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT----------PLLTEGFSY 450 + + + GDV+ R ++R++E S +L+ ++ +PDT + + Sbjct: 242 LDFDIPIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLPDTTGGHINPAMANIGKQKALR 301 Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 P A +E+P+GE + + +++ +R++ RA ++ N L M RG+ V+D +I Sbjct: 302 PPPGDAYARIESPKGELGFYLVSDGSERPYRYKVRAPSFINLTPLGDMCRGHKVADVVVI 361 Query: 511 IGSLDPCYSCTD 522 +GS+D D Sbjct: 362 LGSIDIVMGEVD 373 >UniRef50_B6AS24 Putative NADH-ubiquinone oxidoreductase, 49 kDa subunit n=2 Tax=Leptospirillum sp. Group II RepID=B6AS24_9BACT Length = 499 Score = 354 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 207/482 (42%), Gaps = 34/482 (7%) Query: 57 DGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVW 116 G L+G D VY AL+ V+++ V +S FPS+T P A Sbjct: 35 GGRFVSLWGTDHPEGF----VYAALA---GPDGLFVLRSPVSKESGTFPSLTALFPLASR 87 Query: 117 GEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINE 176 ER +RD+YG IP GL D R + DD + YPF+ Sbjct: 88 PERAVRDVYGWIPEGLSDTRPWIRQDD----------HGGHGSGKERSPEGGRDYPFVRV 137 Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 IPVGP+H EPGHFR V GE+++ + RL Y H+G+ L R +VT Sbjct: 138 DGEGVHEIPVGPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHR-PVGDVT 196 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 LS R+ G A A+ +VE A P+RA +R+ILLE ER+ +HL +LG + Sbjct: 197 RLSSRISGDSAVAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGND 256 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 GF G +QF R++E + + G R GGV D + + ++ Sbjct: 257 AGFAFGLVQFGRLKEDLLRTNGQIFGHRYLMDTICPGGVAVDPGDGALSRLRSELPRLQE 316 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGN 400 ++ L + ++ R G G+LD +A DLR DHP Y Sbjct: 317 EIHVLKTIYDEHGGLQDRFAGTGVLDPLLAGAWGLGGVVGRASGQLLDLRHDHPVRPYDI 376 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFV 460 + GDV +RV VR +E SLA LE L + P P P A G++ Sbjct: 377 ERVPVALAKRGDVGARVQVRFQEIRHSLAFLESVLASFPPGPARRGLVCRSPKAEGFGWI 436 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E RGE + W L + + ++ WP L + GN V+D PLI S + YS Sbjct: 437 EGFRGEVLAWVRLDRDGNVEDAHFHDPSWLLWPALERAVPGNLVADFPLINKSFNLSYSG 496 Query: 521 TD 522 D Sbjct: 497 HD 498 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 354 bits (908), Expect = 6e-96, Method: Composition-based stats. Identities = 117/471 (24%), Positives = 185/471 (39%), Gaps = 36/471 (7%) Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 + L+ + A V+ + F S+TP P EREI + + ++ Sbjct: 51 PNPEEKIRLICVLANDDAGS----VEVVAADTDPAFQSLTPDCPQVQAFEREIYEQWNVL 106 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGP 188 P G P + + + + T F + +A + VGP Sbjct: 107 PQGHPWLKSV--------------RSHPPVVAAHGKAAHAGTTDFFSIDGEEAHEVAVGP 152 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 +H EPGHFR GE + + L Y HRG+E + + + G Sbjct: 153 VHAGIIEPGHFRFQCHGETVYHLEISLGYQHRGVEPALKDG-PDKRTLHYFETLAGDTSI 211 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 H A +E GI+VP R IR+I E+ER+ +H+ +LG VGF R Sbjct: 212 GHGTAGCCMIEALAGIDVPPRGQAIRAIAAELERIANHIGDLGAISGDVGFLPTMSYCGR 271 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 +R ++ + ++ G+R GL + GG DI Q + L+ + E+ AD +E++L T Sbjct: 272 IRGDALNLTAMICGNRFGRGLVIPGGTAWDITHAQTGELLRRLDEIHADAHSAIELMLNT 331 Query: 369 PNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFTFTGGD 412 P++ R + G + Q AR D+R HPY +Y P + T GD Sbjct: 332 PSVLARLENTGQVPTQTAREIGLVGLAARASGLKQDVRTSHPYENYRLTPLPVITRKTGD 391 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE-GFSYKPHAFALGFVEAPRGEDVHWS 471 +R +R E S + L ++P + P A VE RGE H + Sbjct: 392 CLARAQIRWGEIQASFKFIRTLLADLPGGEVANLWEGKLPPQKMATILVEGWRGEICHTA 451 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 K ++ ++ NW + LR +SD PL S + Y D Sbjct: 452 ATDSAGKFSFYKIVDPSFHNWFGVSLALRNQQISDFPLCNKSFNLSYCGHD 502 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 353 bits (906), Expect = 9e-96, Method: Composition-based stats. Identities = 101/433 (23%), Positives = 180/433 (41%), Gaps = 47/433 (10%) Query: 136 RRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNS--DARVIPVGPLHITS 193 R ++ + + ++ + +E + + ++ +GP H + Sbjct: 19 RFWPKHNEKIYERLENKHAWLEEKRAAAQGDGKPPATQRSEVDPLENEMILNIGPQHPAT 78 Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 + +DGE I + + Y+HRG+EKLAE + Y E +DR+ + ++++VA Sbjct: 79 HGVLRCVVKMDGETIEKSVLDIGYLHRGIEKLAEHKT-YQEFMPYTDRMDYLSPYSNNVA 137 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKS 313 + +VE IEVP+RA IR I+ E+ R+ SH L LG+ G +GF+ F+ RE+ Sbjct: 138 WCLAVEKLADIEVPERAQWIRMIMSELARISSHCLWLGVGMMDAGAVSGFVWTFQEREEI 197 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQ 373 ++ + + G+R T + IGGV D V ++ +L + Sbjct: 198 YSIMDEVAGARFTVSHSRIGGVANDFSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVE 257 Query: 374 RTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRV 417 R +G+G + ++ A D+R PY Y + T+ GD +R Sbjct: 258 RNKGVGRVTKEEALELGLTGPNLRGSGVPYDVRRFEPYLKYDEVDFTIPVREEGDCLARY 317 Query: 418 MVRVKETFDSLAMLEFALDNMPDTPLLTEGFS---------------------------- 449 +R+ E S+ ++E LD M + P+ ++ Sbjct: 318 FLRLDEMKQSVRIIEQCLDRMTEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTV 377 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 A + +E P+GE + + +R R A ++ N + +ML G V+D + Sbjct: 378 PPKGAHSYHAIEGPKGELGFYLTSDGTGRPWRVRINAPSFTNLQAMEHMLEGEMVADTVV 437 Query: 510 IIGSLDPCYSCTD 522 IIGSLDP D Sbjct: 438 IIGSLDPVMGEAD 450 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 96/410 (23%), Positives = 173/410 (42%), Gaps = 47/410 (11%) Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 P +E + V+ +GP H ++ + ++GE +V + ++H Sbjct: 14 PTPSQIAAVALNNEPDENGEQSMVLSMGPQHPSTHGVLRLAVELNGENVVQLAPDVGFLH 73 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 G+EK ET+ Y + L+DR+ + ++++ Y ++E + +VP+RA T+R +LLE Sbjct: 74 TGIEKTIETKT-YTKSIVLTDRMDYLAPMSNNMVYVAAIEKLMQQDVPERAQTLRVLLLE 132 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 + R++SHL+ LG + + F R RE + + E+L G+R +GG+ DI Sbjct: 133 LTRINSHLVWLGTHALDLAAMSVFFYAMREREYILDIFEMLTGARMMTSYFRVGGLAWDI 192 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------- 386 + + V E ++L +QRT+G+G+++ A Sbjct: 193 PADFIPTVEDFLTHFLPKVDEYEDLLTNNLLWKQRTKGVGVVNAADAIALGLSGANLRAS 252 Query: 387 ---RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDN---MPD 440 DLR PY+ Y + GD++ R RV+E +S+ + A++ M Sbjct: 253 GVDWDLRKTMPYSGYETYQFDVPVGQAGDIYDRYRCRVQEMRESVKIARQAIERVKQMHG 312 Query: 441 TPLLTEGFS---------------------------YKPHAFALGFVEAPRGEDVHWSML 473 P +TE P A +E+PRGE + + Sbjct: 313 QPYVTENRKVAPPPKSEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRGEIGCYVVS 372 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 K +R RA ++ N L ++ +G ++D +I S+DP DR Sbjct: 373 DGTPKPWRVHFRAPSFINLQALPHIAKGKLMADLVALIASIDPVLGEVDR 422 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 353 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 107/405 (26%), Positives = 174/405 (42%), Gaps = 45/405 (11%) Query: 163 EPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM 222 EPT + V+ +GP H ++ RL ++GE I D + Y+HRG+ Sbjct: 7 EPTPVIISEERQISDTRREMVLNMGPQHPSTHGVLRVRLTLEGETITACDPVIGYLHRGV 66 Query: 223 EKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVER 282 EK+ E++ Y + T +DR + ++++ Y +VE LGIE P+RA R I+ E+ R Sbjct: 67 EKIGESKR-YAQFTPWTDRTDYVAAPSNNLGYVLAVEKLLGIEAPERAQYWRMIMGELAR 125 Query: 283 LHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 + SHL+ LG +G + + FR RE + + E G+R T + IGG R I Sbjct: 126 IASHLVWLGTHALDIGALSMSLYCFRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAG 185 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA---------------- 386 ++ E ++L A P RT+G+G+++ +A Sbjct: 186 LPEMIRDFLKVFPQRQREYEDLLSANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVN 245 Query: 387 RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLT 445 D+R PY Y I + T GDV+ R +VR++E SL ++E LD +P D PL Sbjct: 246 YDVRKAQPYLLYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKL 305 Query: 446 EGFSY---------------------------KPHAFALGFVEAPRGEDVHWSMLGDNQK 478 +Y P +E +GE ++ + + Sbjct: 306 AESNYVIPPHETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGELGYYIVSDGSPV 365 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R R R + N L Y+ G ++D +IG++D DR Sbjct: 366 PYRLRIRTPDFVNLQSLPYLAEGAMLADVVALIGTIDIVLGSVDR 410 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 131/523 (25%), Positives = 220/523 (42%), Gaps = 35/523 (6%) Query: 27 DEERQTPEQVTI---TVKINLLPDVVQYLYYQHDG----WLPVLFGNDERTLNGHYAVYY 79 + + P ++ T++ + L + Q L + R G ++V Y Sbjct: 5 ESSTERPIELLFETQTLRPDKLLEAAQSLLDDLGDTPSAHGRIQCAYALRDAEGKFSVRY 64 Query: 80 ALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLV 139 +S + I VDA S PS+ +P W EREI+D+YG+ P+ L+ Sbjct: 65 IISQGANQPWGIW---SVDASSGTLPSLANVLPLLGWYEREIQDLYGITFTDHPEPYPLI 121 Query: 140 LPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHF 199 L + + PL+ +E + N D + +P GP+ E F Sbjct: 122 LHEGFIPAKPPLQTGFDP--KAEPIRGQAEPFAEANMVGDDIQRLPFGPIRADVVESAQF 179 Query: 200 RLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVE 259 GE I+ RLFY HR ME E + + L++RV G+ AH +A++ ++E Sbjct: 180 VFHYIGEGILHYHPRLFYKHRAMEARFEG-VPISAACVLAERVSGVDSVAHVLAFSQAME 238 Query: 260 NALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAEL 319 ALG + P RA R +L E+ERL++HL G + + E+ + Sbjct: 239 AALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKTTTLKVAEAEGIWLEEQVKQINGR 298 Query: 320 LIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIG 379 L GSR G+ + GG+RRD+ + + ++ + + ++ L T + R G Sbjct: 299 LTGSRFLRGVIVPGGLRRDLDAT---ALIADLNALQPQIEDYLDTLANTRSYLDRLLTTG 355 Query: 380 ILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKE 423 +L RQ+A RDLR DH YA Y + + T T GD +R VR +E Sbjct: 356 VLPRQVAFDQGATGPIERASDLDRDLRRDHGYALYPELQFAVPTATEGDADARARVRDQE 415 Query: 424 TFDSLAMLEFALDNMPDTPLLTEGFSYKP--HAFALGFVEAPRGEDVHWSMLG-DNQKLF 480 SL ++ AL+ + P+ + P LG+ EA RG ++ ++L Sbjct: 416 IRQSLHLIRQALNKLEPGPICRTESTIDPPMEGMGLGWAEAVRGGLIYAVHWDAKTERLT 475 Query: 481 RWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R + + +++NW V + + + + D + S + DR Sbjct: 476 RVKIKEPSFSNWRVFPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 352 bits (903), Expect = 2e-95, Method: Composition-based stats. Identities = 125/408 (30%), Positives = 213/408 (52%), Gaps = 32/408 (7%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 +P+GP+H EP +F ++GE I D+ HRG+E + R + Sbjct: 1 MSQKKAPYELPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPV-Q 59 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 + L DR+CGICG H++ + +VE IEVP RA+ +R+I+ E ER+ SH+L G++ Sbjct: 60 ILHLCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAA 119 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 H +GFDT F +++RE+S+ + E + G+R YG+ ++GG RRDI + + + ++ Sbjct: 120 HELGFDTLFYLAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYY 179 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADY 398 + ++V + L + R + GIL ++ +A D+R D PYA Y Sbjct: 180 EGLLEKMVNLFLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAY 239 Query: 399 GNIPKTLFTFT------GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--- 449 G++ + GDV+ R++VR+ E S+ ++ + MP+ P+L E Sbjct: 240 GDLDFDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKL 299 Query: 450 ----YKPHAFALGFVEAPRGEDVHWSMLGDNQK-LFRWRCRAATYANWPVLRYMLRGNTV 504 K A VEAPRGED+H+ + Q+ W+ +A+TY+N +L+G + Sbjct: 300 LMNLKKASGEAFARVEAPRGEDMHYVRMNGKQEAPEMWKVKASTYSNQMAWVEILQGEQI 359 Query: 505 SDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 +D P+I+ S+DPC SCTDRV +V + + + + + R +++ R Sbjct: 360 ADIPIIVASIDPCMSCTDRVAVV-GQDGNAGIMTKEHLHRLSVEKTRR 406 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 351 bits (901), Expect = 4e-95, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 197/360 (54%), Gaps = 17/360 (4%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 +IP GP H EP H +L V+ E IV+A L YVHRG+E LA R YN++ ++ Sbjct: 1 MSRTIIPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIR-DYNQMVYI 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +RVCGIC H++ Y +E + +EVP RA +R I E+ R+HSHLL LGL G Sbjct: 60 VERVCGICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFADGFG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 F++ FMQF+++RE+ M + E G+R +N++GGVRRD+ K Q+ L + ++ ++ Sbjct: 120 FESLFMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKEL 179 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPK 403 +L++ +L +++RT G+G+L + A L P YA + + Sbjct: 180 RQLMKTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQLGYAAFDELDF 239 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 T GD ++R VR ET S+ ++ A+ +PD+ L KP + VE P Sbjct: 240 EPVTSPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSEL-AAKVPGKPTGEVVCRVEQP 298 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE +++ ++ + R R R T+AN P L ML G ++D P+ ++DPC SCT+R Sbjct: 299 RGELLYYLKGNGSKNMERVRIRTPTFANIPPLLAMLPGAQLADVPIAALTIDPCISCTER 358 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 138/404 (34%), Positives = 214/404 (52%), Gaps = 35/404 (8%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 IP GP+H +EP F L +DGE+IV+ D +L Y RG++ +A R Y ++ +L++ Sbjct: 8 WIKIPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIA-YRRNYVQIMYLAE 66 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC F+H+ YT +VE A GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+D Sbjct: 67 RICGICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYD 126 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T + RE+ M + E + G+R Y + IGGVRRDI ++ + L +++ R+ + + Sbjct: 127 TVLHLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQ 186 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKT 404 + E+ L P +E R + ++ +++A D R+ Y ++ Sbjct: 187 IEEVFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVK 246 Query: 405 LFTFT-------GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--------S 449 GDVF R VR+ E + SL MLE ALD MP+ + T Sbjct: 247 PVMPQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLK 306 Query: 450 YKPHAFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 +G EAPRGE VH+ + K RW+ R T+ N + + G+ V+D Sbjct: 307 IMVDGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPREPTFPNLFAVAKGVTGDQVADFV 366 Query: 509 LIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 L + S+DPC SCTDRV +V + + + + ++ R I + R Sbjct: 367 LAVASIDPCLSCTDRVAVV--QDGKKRILTETDLLRLSIKKTRE 408 >UniRef50_C6PUG2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PUG2_9CLOT Length = 526 Score = 351 bits (900), Expect = 5e-95, Method: Composition-based stats. Identities = 133/529 (25%), Positives = 233/529 (44%), Gaps = 26/529 (4%) Query: 14 LAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNG 73 + K + + E + ++ + V+I+ + ++ ++ F D Sbjct: 3 IDLFKEELSNLKYNSEIKNKNEIYVDVEISHVKSLISLFLVKYKLKFIAQFCVDNSNEEN 62 Query: 74 ---HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPV 130 + + LS ++ +++V+ + + F + + ERE+ D++GL Sbjct: 63 AQNDFMINIILSNS-KKRYFVIVRYKTQEEIKTFQ---DILFQSHLFEREMCDLFGLKIK 118 Query: 131 GLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLH 190 D R++V + WPED++PLRK Y + E + Y A I VGP+H Sbjct: 119 DGIDTRKIVKHEKWPEDVYPLRKSF-PYGAKLEEKNEILPYKCKEAFGDGAYQISVGPVH 177 Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 EPGHFR V GE I + + RL Y HRG+EK+ E + +++ + +R+ A+ Sbjct: 178 AGIIEPGHFRFSVIGEAIENLELRLNYKHRGIEKICEN-VDASKLNLVFERMACESSAAY 236 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVR 310 + +Y VE L + PQ +R +LLE+ER+++ L ++ C +GF +F Sbjct: 237 AESYALLVEKLLSYDTPQEIKALRVVLLELERIYNFLGDISGICVDIGFSYPAKRFGAFG 296 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 E+ + E + GSR + + G+ D KE K + M+ + +++E+ L + + Sbjct: 297 EQIHKLCERITGSRFMRNVIIPCGINIDFTKEHIEDIKKTLNGMKKRMDKIIEITLDSVS 356 Query: 371 MEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVF 414 R + GI+ + A D+R PY YG + K T G VF Sbjct: 357 FLDRVENTGIVRNKTAKKLYMTGITGRASGINYDVRKSFPYEIYGILKKNNNTLEIGGVF 416 Query: 415 SRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG-FSYKPHAFALGFVEAPRGEDVHWSML 473 R +++KE +D+ + +LD + L T+ F AL VE +GE + + + Sbjct: 417 ERYKLKIKEIYDAYNFIFASLDFINKDILKTKTEFKLVEETEALAAVETVKGELIVYGKV 476 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G + K R + + NW L Y + G V D PL S + YS D Sbjct: 477 GKDNKFNRIYFKTPSVTNWNGLTYAVLGEIVPDFPLCNKSFNMSYSEND 525 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 351 bits (900), Expect = 6e-95, Method: Composition-based stats. Identities = 136/403 (33%), Positives = 219/403 (54%), Gaps = 32/403 (7%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 IP+GP+H +EP F + +DGE+I+ D +L Y RG+E +A R Y ++ +L + Sbjct: 8 WVKIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAM-RRNYIQLLYLVE 66 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC F+H+ YT +VE GIEVP+RA IR+I+ E+ER+HSHLLNLG+ H +G+D Sbjct: 67 RICGICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYD 126 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV-S 359 T + RE+ M + E + G+R Y +N IGGVRRDI ++ + L +++ R +V Sbjct: 127 TVLHLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMP 186 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPK 403 ++ E+ L P +E R + G++ ++IA +D+R++ Y + Sbjct: 187 KVEEIFLYDPTVEARLRDAGVIPKRIALEYSAQGPTARGSGIKKDVRYNERLGVYPELGI 246 Query: 404 TLFTFTG------GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-------Y 450 T GDVF R++VRV E + S+ ++E A D MP+ + T Sbjct: 247 KPITPKEFTGVIKGDVFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLK 306 Query: 451 KPHAFALGFVEAPRGEDVHWSMLG-DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 K +G EAPRGE +H+ +W+ R T+ N + L G ++D P+ Sbjct: 307 KAEGAGIGRYEAPRGETIHYVRANPGTDTPAKWKAREPTFPNLFAVARALVGEQLADVPV 366 Query: 510 IIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 I S+DPC SCTDRV ++D + + + K++ + I++ + Sbjct: 367 AIASIDPCLSCTDRVAIIDSETGKKRVLTEKDLLKASIEKTKE 409 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 148/507 (29%), Positives = 221/507 (43%), Gaps = 33/507 (6%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDER-TLNGHYAVYYALSMEGAEKCWIVVKAL 96 + + L Q L Q + ++ G+D+ G V Y + + Sbjct: 10 VELSAGELIPTAQSLLGQGY-RIALMAGHDDPAERGGTLRVVYVF-TRAGTDQRVELTLR 67 Query: 97 VDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAM 156 D PS+ A EREIRD++G++P G P RLV WP HP+R+D Sbjct: 68 CDPADPHLPSLAGLSFPAGRFEREIRDLFGIVPDGHPMPSRLVRHFHWPRGWHPMRRD-- 125 Query: 157 DYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLF 216 P YPF IPVGP+H PGHFR V GE +++ RL+ Sbjct: 126 -AGPPPPFGDVDGPYPFRTVEGPGVYEIPVGPVHAGMIGPGHFRFSVVGETVLNLKARLW 184 Query: 217 YVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 +VHRG+EKL R L++RV G H++AY +VE+A G+ + A IR+I Sbjct: 185 FVHRGLEKLFAGR-AVAAGVELAERVSGDTTVGHALAYVRAVEDASGVTLDPAAQRIRAI 243 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 LLE+ERL++H+ ++G + VG R+RE+ + + + + G R G ++GGVR Sbjct: 244 LLELERLYNHIGDIGALANDVGHGILNNHALRIRERLLRINDAVTGHRLMRGAIVVGGVR 303 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL------- 389 +L + + + AD +E+V++ L + R G +L + A DL Sbjct: 304 VRVLPDAGE-----LAAVAADCAEVVDLALGHSVVRDRFTGTAMLSHRQAVDLGTLGYVA 358 Query: 390 ---------RFDHPY--ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA---L 435 RFDHP Y + T GDV SR +VR +E S+ M+ + Sbjct: 359 RASGVAVDARFDHPVPGLVYDPAERLSTHPTDGDVASRFLVRAQEIQSSVRMIAALAGQV 418 Query: 436 DNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 D + S +G VE RG VH L + +L R R ++ NWP L Sbjct: 419 DTTAPREVGGSTSSAAGVRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVDPSFFNWPAL 478 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + V D PL S + Y+ D Sbjct: 479 PLAMADTIVPDFPLANKSFNLSYAGND 505 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 128/498 (25%), Positives = 206/498 (41%), Gaps = 31/498 (6%) Query: 41 KINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDAD 100 + ++V + G L LFG G V L+ + + ++ + DA Sbjct: 38 EPARFNEIVLAAHR-GGGRLAALFG--RPDAGGGVLVTAVLADDPEGRLALLATRVADA- 93 Query: 101 SREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 FPS+ +PAA ERE+ + +GL P G P + L P R + Sbjct: 94 ---FPSIAAELPAAQAFERELAEQWGLRPEGHPWLKPL-------RFEPPRRAAPDPFGR 143 Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 + T YPF + + VGP+H EPGHFR GE++ + L Y HR Sbjct: 144 QDPRATIPGEYPFFRVEGEEVHEVAVGPVHAGIIEPGHFRFQCHGERVFHLEIVLGYQHR 203 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 G+E+L L++ + G H +AY +VE+ G+ RA ++R I LE+ Sbjct: 204 GVERLLRGG-PDRRSMALAESIAGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLEL 262 Query: 281 ERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL 340 ER+ +H+ +LG VGF +R + + + G+R L GGV+ D+ Sbjct: 263 ERIANHVGDLGALAGDVGFLPTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLD 322 Query: 341 KEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA-------------- 386 E VR ++ +P++ R +G G + +A Sbjct: 323 AEAARALAARVRAAWEKTRRAASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARASG 382 Query: 387 --RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 RD+R DH + Y + T GDV +R ++R+ E S+ + L+ +P P Sbjct: 383 VDRDVRRDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVEFVLDQLERLPGGPSR 442 Query: 445 TEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV 504 T P A + VE RGE H ++ +L ++ + ++ NW L LR + Sbjct: 443 TAPGPLAPGALVVSMVEGWRGEIAHVAVTDAQGRLEAYKVKDPSFHNWFGLAMALRDGQI 502 Query: 505 SDAPLIIGSLDPCYSCTD 522 SD PL S + Y+ D Sbjct: 503 SDFPLCNKSFNLSYAGHD 520 >UniRef50_B1W516 NADH-quinone oxidoreductase subunit D 1 n=24 Tax=Actinomycetales RepID=NUOD1_STRGG Length = 440 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 95/435 (21%), Positives = 165/435 (37%), Gaps = 62/435 (14%) Query: 150 PLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 R E + + + ++ +GP H ++ L +DGE + Sbjct: 7 TPRATTEGTVYTVTGGDWDEVVESAVKSDDERIIVNMGPQHPSTHGVLRLILEIDGETVT 66 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VP 267 +A + Y+H G+EK E R TF++ R+ + F + AY VE LGIE +P Sbjct: 67 EARCGIGYLHTGIEKNLEFRNWTQGTTFVT-RMDYLTPFFNETAYCLGVEKLLGIEDQIP 125 Query: 268 QRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTY 327 RA +R +L+E+ RL SHL+ + +G T + FR RE + + EL G R + Sbjct: 126 DRATVLRVLLMELNRLSSHLVCIATGGMELGATTIMIYGFRDRELVLDLFELFTGLRMNH 185 Query: 328 GLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD----- 382 GG+ +D+ + + ++ M+ ++ E ++ P + R Q +G LD Sbjct: 186 AFVRPGGLAQDLPPGAVDRLREFIKTMKKNLPEYDKLATGNPIFKARMQDVGYLDLTGCM 245 Query: 383 -----------RQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAML 431 + DLR PY Y + T D + R ++R++E SL ++ Sbjct: 246 ALGATGPVLRSAGLPHDLRKSDPYCGYETYDFEVPTADTCDSYGRFLIRLEEMRQSLRII 305 Query: 432 EFALDNMPDTPLLTEGFS------------------------------------------ 449 E +D + P++ Sbjct: 306 EQCIDRLEPGPVMVADKKIAWPAQLALGPDGLGNSLDHIRNIMGTSMEALIHHFKLVTEG 365 Query: 450 -YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 P VE+P+GE + + +R R ++ N + M G V+D Sbjct: 366 FRVPPGQVYTAVESPKGELGVHVVSDGGTRPYRVHFRDPSFTNLQAMAAMCEGGQVADVI 425 Query: 509 LIIGSLDPCYSCTDR 523 + + S+DP DR Sbjct: 426 VAVASIDPVMGGVDR 440 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 103/392 (26%), Positives = 166/392 (42%), Gaps = 43/392 (10%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + E ++ VI +GP H + + +DGE +VD L Y+HR MEK+AE+R Sbjct: 3 MLETRAERMVINLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQ 62 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + +++ R + N+ E G++VP+RA IR I+LE+ R+ SHLL LG Sbjct: 63 YLPYVT-RWDYLATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPF 121 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G + F FR RE + E G R + +GGV D+ + Sbjct: 122 MADIGATSPFFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNY 181 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYAD 397 + + E ++ P R +G+G + R+ A DLR Y Sbjct: 182 LPPKIDEYERLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEI 241 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL-------------- 443 Y + + TGGD +R +VR++E +S+ M+ ALD +P P Sbjct: 242 YDELDWNVAWDTGGDTLARYVVRIQEMRESVKMIRQALDQLPGGPYENLEAQRLSGGPKS 301 Query: 444 ------------LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN 491 + P VEAP+GE + + D+ +RW+ R + N Sbjct: 302 EWNGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGELGVYLIGDDSTFPWRWKIRPPGFIN 361 Query: 492 WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VL +++G ++D I+GS+D DR Sbjct: 362 LAVLPKLVQGTKLADLMAILGSVDIIMGEVDR 393 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 347 bits (890), Expect = 8e-94, Method: Composition-based stats. Identities = 132/359 (36%), Positives = 189/359 (52%), Gaps = 18/359 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDR 241 P+GP H +E + L ++GE +VDA+ ++ ++HR +EK A R + L +R Sbjct: 3 YKFPLGPYHPAFEEGEYIELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRD-LGLVER 61 Query: 242 VCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDT 301 CGIC F HS AY +VE A G+EVP+RA IR + E+ER+HSHL+ LG H +GFDT Sbjct: 62 TCGICSFHHSWAYCLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDT 121 Query: 302 GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSEL 361 FM + RE M M ELL G+R Y +N +GGVRRD+ + Q + + +L Sbjct: 122 LFMFTWSGREAVMDMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKL 181 Query: 362 VEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 + ++ RT+ +GI+ R+ A DLR PYA Y + L Sbjct: 182 KDTWSKDASILARTKNVGIVSRKEAHLLGVVGPTARGSGIREDLRKTAPYAVYPLLDFDL 241 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK-PHAFALGFVEAPR 464 GDV+SR VRV E +S+ ++ LD MP + K +G VEAPR Sbjct: 242 VVLDDGDVWSRTFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPR 301 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE + + K R + R T N P +M+RG+ ++DAP+I+G +DPC SC DR Sbjct: 302 GELAYHLITDGTDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPCMSCMDR 360 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 346 bits (888), Expect = 1e-93, Method: Composition-based stats. Identities = 128/405 (31%), Positives = 203/405 (50%), Gaps = 32/405 (7%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 A IP+GP+H EP V+GE+IV D + + HRG+E + R + Sbjct: 1 MPKTAYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAI-QTL 59 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +LS+R+CGIC +H A+ + E ALGIE P RA IR I+ E+ER+HSH+L LG+ H Sbjct: 60 YLSERICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHE 119 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +GFD+ ++ REK + + ELL G+R Y + +IGGVRRD+ + + Sbjct: 120 MGFDSLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWK 179 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 ++ E++L+ P + RT+G+ L +++A D+R D PY Y + Sbjct: 180 FTEQMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYAD 239 Query: 401 IPK------TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG------- 447 I + GD + MVR+ E SL ++E+ +DN+P+ +L Sbjct: 240 IDVRAVVPQDIVGEAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIPNYPALLA 299 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 + A+G EAPRGE VH+ W+ A +Y N +L G V+D Sbjct: 300 KIRRTKGEAIGAHEAPRGEVVHYLKFDGRDGPSVWKVIAPSYNNINSWAPLLLGAEVADI 359 Query: 508 PLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 P+++ +DPC C DRV L+ + + K + Y+ I + +++ R Sbjct: 360 PIVVAYIDPCMCCNDRVALL--KTPEGKVLGYEYIHKKAVEKTRK 402 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 346 bits (887), Expect = 1e-93, Method: Composition-based stats. Identities = 132/407 (32%), Positives = 207/407 (50%), Gaps = 31/407 (7%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + +P+GP+H+ EP L ++GE I DA R +HRG+E +A R +V Sbjct: 1 MSETKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPI-QV 59 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +L++RVCGIC F+H++A+ +VE+A IEVP RA IRS++LE+ER+HSH+L G++C+ Sbjct: 60 IYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +GFD+ F +REK M + E L G+R Y + +GGVR D+ + ++ R Sbjct: 120 TIGFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYR 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + + E + P ++ R + +G+L + A D+R+ PY Y Sbjct: 180 NEFASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYC 239 Query: 400 NIPKTLFTFT------GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS---- 449 +I GDV+ R +VRV E SL +LE ++ +P+ + E Sbjct: 240 DIHVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSITFEPKVNKLL 299 Query: 450 ---YKPHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGNTVS 505 K G +EAPRG+D H L Q + W+ RA TY+N M + N ++ Sbjct: 300 TVLKKAEGVGYGCIEAPRGDDTHAVGLKAQQENVQWWKVRAPTYSNAVSWPLMFKDNELA 359 Query: 506 DAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 DAPLII S+DPC SC +R+ L D V ++ + ++ Sbjct: 360 DAPLIINSIDPCISCMERMVLSDTSSGTKSVVTKADLLKLCREKTDK 406 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 344 bits (882), Expect = 5e-93, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 47/386 (12%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + GP H + L +DGE++VDA + Y+H G EK+ E + +N+ ++DR+ Sbjct: 20 LNFGPQHPATHTTLRLVLKLDGERVVDAVPDIGYLHSGFEKIGE-HLDFNQYVTVTDRMN 78 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 I A++VA+ +VE +GIE+ R IR+I+ E+ R+ HLL+ G G T F Sbjct: 79 YISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDHLLSTGAMGLDTGAFTFF 138 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 + F RE+ + E L G+R T +GG+ +D+ + +R + ++ Sbjct: 139 LYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEKIRDFLRTFPQTIDDMER 198 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 ++ R +G+G+L ++ A RDLR D PY YG++ + Sbjct: 199 LVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDLRKDEPYLAYGDLDFQVCC 258 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----------------- 450 T GD F+R VR+ E +SL ++ AL+N+P P+ Sbjct: 259 ATAGDCFARYYVRMAEMRESLKIVAQALENLPAGPVNVGMDDRAALPSKAEVYQTIEGTI 318 Query: 451 -------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 P+ +EAP GE + + + +R RCR ++ ++ + Sbjct: 319 THFELVMLNRGFTVPNEEVYSAIEAPNGELGFYLVGDGSDVAYRARCRPPSFIHFSLFPE 378 Query: 498 MLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++RG+T+SD ++GSL+ + DR Sbjct: 379 LIRGHTLSDVVAVLGSLNIIAAELDR 404 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 344 bits (882), Expect = 6e-93, Method: Composition-based stats. Identities = 119/477 (24%), Positives = 204/477 (42%), Gaps = 33/477 (6%) Query: 71 LNGHYAVYYALSMEGAEKCWIVVKALVD------ADSREFPSVTP-RVPAAVWGEREIRD 123 N + V + EG +K + V D + F S+T EREI + Sbjct: 40 RNEGFIVQFFAYEEGQKKHLLAVVRNRDLYVIGTEVGKSFQSLTGAVSEKFHMFEREIAE 99 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 YG+ P G P + + ++ + + YPF + Sbjct: 100 QYGITPDGHPWLKMVRYHKNYAGAKDVFGNNYGKENIPG-------NYPFFSVEGESIHE 152 Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + VGP+H EPGHFR GE+++ + +L Y HRG+EK+ T + + + + Sbjct: 153 VAVGPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPT-LPQKRFPIICESIA 211 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 G H ++ ++E GI V + A IR+ LE+ER+ +H+ +LG F+ Sbjct: 212 GDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPA 271 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 F R+R + + + ++L G+R GL GGV + +EQR + + E+ ++ + + Sbjct: 272 AYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENICD 331 Query: 364 MLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFT 407 ++ + ++ R + G + + IA D+R P Y +P Sbjct: 332 LIFSAHTVQARFEHTGTVQHEMAKDLGLVGYSGRASGIAYDVRNSFPTECYRELPANENR 391 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT--PLLTEGFSYKPHAFALGFVEAPRG 465 T GDV SR MVRV+E SL ++ ++ +T + + P+AF + E RG Sbjct: 392 VTNGDVNSRGMVRVEEIMHSLKLINILIEESENTASEVHMQDQILAPNAFIITLNEGWRG 451 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 E H + K+ R++ + ++ NW L LR +SD PL S + Y D Sbjct: 452 EISHCILTDKKGKVQRYKIKDPSFHNWTGLAMSLRNQEISDFPLCNKSFNLSYCGFD 508 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 344 bits (882), Expect = 7e-93, Method: Composition-based stats. Identities = 117/469 (24%), Positives = 189/469 (40%), Gaps = 27/469 (5%) Query: 70 TLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIP 129 +G +Y L+ I+ + EFPS+ + P EREI + G+ Sbjct: 48 PADGAITLYCLLASPADGVLGIMQTI---CNGTEFPSIAVQCPQLQLFEREIAEQCGIRF 104 Query: 130 VGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPL 189 VG P + + +H + + + + + + VGP+ Sbjct: 105 VGHPWFKPV-------RFVHSAVRGHDAWGRADDQPIQVGVMEYYRVEGEEIHEVAVGPV 157 Query: 190 HITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 H EPGHFR GEQ+ + L Y HRG+E+L + + + + G Sbjct: 158 HAGVIEPGHFRFQCHGEQVFHLEISLGYQHRGIEQLLLNG-PHPQTLRQMEAIAGDTSIG 216 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRV 309 H +AY +E+ P AH +R I LE+ERL +H +LG VG+ R+ Sbjct: 217 HGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGAIAGDVGYLPTASFCGRI 276 Query: 310 REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATP 369 R + M+ + GSR GL GG + + QR + + RA+++ +E+L TP Sbjct: 277 RGDFLNMSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRLATGRAELTSAIELLWNTP 336 Query: 370 NMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDV 413 ++ R +G G++ + A RD+R D+P+ Y + T GDV Sbjct: 337 SVMSRLEGTGVVSAESAVEMGLVGPAARACGLKRDVRSDYPFGIYRMAQVPIATAHHGDV 396 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 SR VR +E SL L +P E + + E RGE H ++ Sbjct: 397 CSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQLTVALTEGWRGEICHLAIT 456 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + +++ ++ NW L LR +SD PL S + Y D Sbjct: 457 DSAGRFRQYKITDPSFHNWQGLAMALRNEQISDFPLCNKSFNLSYCGFD 505 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 131/404 (32%), Positives = 212/404 (52%), Gaps = 35/404 (8%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 IP GP+H +EP F + +DGE+IV+ D +L Y RG++ + R Y ++ +L++ Sbjct: 7 WVKIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGM-RRNYVQIMYLAE 65 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CGIC F+H+ Y +VE GIEVP+RA IR I+ E+ER+HSHLLNLG+ H +G+D Sbjct: 66 RMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYD 125 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 T + RE+ M + E + G+R Y + IGGVRRDI ++Q+ L +++ R + + Sbjct: 126 TVLHLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQ 185 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 + ++ L +E R + + ++ +++A D R+ Y ++ Sbjct: 186 IEDVFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIK 245 Query: 405 LFTFT-------GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--------S 449 T GDV+ R+ VR+ E + SL +LE ALD MP+ + T Sbjct: 246 PVTPEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLK 305 Query: 450 YKPHAFALGFVEAPRGEDVHWSML-GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 +G EAPRGE VH+ RW+ R T+ N + L GN ++D Sbjct: 306 LLGDGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLV 365 Query: 509 LIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 + I S+DPC SCTDRV +V ++ + + K++ + I++ + Sbjct: 366 VAIASIDPCLSCTDRVAIV--KEGKKVVLTEKDLLKLSIEKTKE 407 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 343 bits (881), Expect = 8e-93, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 186/362 (51%), Gaps = 18/362 (4%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 IPVGPLH+ +EP +FR+ VDGE++V D +VHRG+E LA R Y + L Sbjct: 1 MSTYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIV-L 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 ++RVC +C +H Y ++E+ G+ VP RA +R I E +R+ SH+ N+ + H VG Sbjct: 60 TERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 FD+ FM RE E + G+R IGGV+ D+ K+ R + + ++ + Sbjct: 120 FDSLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTL 179 Query: 359 -SELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNI 401 E++ + P++ RT+GIG+L A D+R PYA Y + Sbjct: 180 RDEIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRL 239 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVE 461 + GDV+SR MVR +E S+ ++ L +MPD P P A+ E Sbjct: 240 DFEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTE 299 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 APRGE +++ + R + R TY NW L M+ G +SD PLI+ S+DPC SCT Sbjct: 300 APRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIVNSIDPCISCT 359 Query: 522 DR 523 +R Sbjct: 360 ER 361 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 95/397 (23%), Positives = 152/397 (38%), Gaps = 48/397 (12%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + E I GP H + L +DGE + D + +HRG EKL E + Y Sbjct: 1 MVEAAPRNFTINFGPQHPAAHGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKT-YL 59 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + DR+ + A+ + E L I +P+R IR + E+ RL SHLLN+ Sbjct: 60 QALPYFDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQ 119 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 VG T + F REK M E G+R +GGV +D+ + Sbjct: 120 AMDVGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGGVHQDLPSKLLDDIWDFCDP 179 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYAD 397 +L +L +QR GI + A DLR PY Sbjct: 180 FLKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQPYEC 239 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP----DTPLLTEGFS---- 449 Y + + GD + R +VR++E S+ +++ L+ + P+ T Sbjct: 240 YSELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPEGQGPVATRDHKIVPP 299 Query: 450 -----------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 P VEAP+GE + + + ++ + RA Sbjct: 300 SRAEMKRSMEAMIEHFKLYTEGHRVPAGEVYVAVEAPKGEFGVYLVSDGTNQPYKCKIRA 359 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++A+ + ++ RG+ ++D IIGSLD + DR Sbjct: 360 PSFAHLSAMDFLTRGHMLADVSAIIGSLDIVFGEIDR 396 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 342 bits (878), Expect = 2e-92, Method: Composition-based stats. Identities = 100/419 (23%), Positives = 168/419 (40%), Gaps = 62/419 (14%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 +D E + E ++ V+ +GP H ++ L ++GE + + + Y+H G+EK Sbjct: 65 SDWEQILGVGEEENERIVVNMGPQHPSTHGVLRLVLEIEGETVTETRLVIGYLHTGIEKS 124 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERL 283 E R VTFL+ R + + AY SVE LGI VP+RA IR +++E++R+ Sbjct: 125 CEYRTWTQAVTFLT-RADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRI 183 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQ 343 SHL+ L +G T + FR REK + + EL+ G R + GG+ +D+ Sbjct: 184 ASHLVWLATGGMELGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGA 243 Query: 344 RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IAR 387 + +M + E +L P + R + +LD + Sbjct: 244 ERAIRAFLADMPKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPW 303 Query: 388 DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG 447 DLR PY Y + T GD F+R +VR++E +SL +++ LD + P++ Sbjct: 304 DLRKTMPYCGYETYEFDVPTALEGDSFARYLVRLEEMGESLKIVDQCLDRLRPGPVMVAD 363 Query: 448 FS-------------------------------------------YKPHAFALGFVEAPR 464 P +E+PR Sbjct: 364 KKIAWPSQLSVGSDGTGNSLAYIRKIMGTSMEALIHHFKLVTEGFRVPAGQVYTQIESPR 423 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE + + + FR R ++ N + + G V+D + + S+DP DR Sbjct: 424 GELGYHVVSDGGTRPFRVHVRDPSFVNLQAVPALTEGGQVADVIVGVASVDPVLGGVDR 482 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 173/372 (46%), Gaps = 20/372 (5%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 +E + + +GP H L +DGE IV D + Y+HR EK+AE R Sbjct: 25 DPDIRDEFGLETLDMNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENR 84 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 Y V L+DR+ + Y +VE+ LG+E+P RA IR ++ E+ R+ SHL + Sbjct: 85 T-YPAVIPLTDRLDYFANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPS 143 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 +G +G T + FR RE+ E + G+R + IGGV+ D+ + + + Sbjct: 144 IGFLLLELGAFTPILYAFRERERIQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWE 203 Query: 350 LVREMRADVS-ELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFD 392 V + + + ++++ +RT+GI L ++ +A D+R D Sbjct: 204 YVEGLEKRIKPDFIDLIEGNEIFIERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRD 263 Query: 393 HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--Y 450 +PY+ Y + + T T GDV + VR+KE ++S+ ++ L+ MP+ ++ + Sbjct: 264 YPYSVYPELDFEVVTDTAGDVEASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVR 323 Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 P G VE PRGE + + +R R ++ N +L+ + G+ + D I Sbjct: 324 PPEGEGFGRVEGPRGEFAVHVVSDGSDTPYRVHYRDPSFVNMQLLQEKMPGHYLPDIMPI 383 Query: 511 IGSLDPCYSCTD 522 +G +DP D Sbjct: 384 MGLVDPVSGGWD 395 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 124/406 (30%), Positives = 196/406 (48%), Gaps = 33/406 (8%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 +P+GP+H EP V+GE+IV D + + HRG+E + R + Sbjct: 1 MAKTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAI-QTL 59 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 +LS+R+CGIC +H A+ E ALGIE P RA IR+I+ E+ER+HSH+L LG+ H Sbjct: 60 YLSERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHE 119 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +GFD+ ++ REK + + E + G+R Y + +IGGVRRD+ + ++ Sbjct: 120 IGFDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWE 179 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 + E+ L+ P + RT+G+ + + +A D+R D PY Y + Sbjct: 180 FTEHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYAD 239 Query: 401 IPKTLFTFT------GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG------- 447 I GD + MVR+ E SL ++E+ +DN+P+ +L Sbjct: 240 IDVKAVVPQDIVGEARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLN 299 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSD 506 K +G EAPRGE VH+ W+ A +Y N Y L G V+D Sbjct: 300 KIKKTEGEGIGAHEAPRGEVVHYFRYDGTRDGPAVWKVIAPSYNNINSWGYCLLGAEVAD 359 Query: 507 APLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRS 552 P+++ +DPC C DRV +V + K + Y + R +++ R+ Sbjct: 360 IPVVVAYIDPCMCCNDRVAVV--KDSTGKILDYSILHRKAVEKTRA 403 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 342 bits (877), Expect = 3e-92, Method: Composition-based stats. Identities = 96/409 (23%), Positives = 158/409 (38%), Gaps = 44/409 (10%) Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 E + +++ + VGP H ++ + +DGE + + Y Sbjct: 5 PARPQESGPGTTGSSGGTLMHTEVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGY 64 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 +H G EK E R Y + + R + F H +AY SVE + +VP RA IR IL Sbjct: 65 LHTGFEKTFEHRT-YQQGVTYAPRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVIL 123 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 E+ R+HSHL+ +G +G T F FR +E + + E G R G +GG+ R Sbjct: 124 HELGRIHSHLVFVGTGLLDLGALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSR 183 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL-------- 389 D+ ++ + + +M V E + P R +G+G++ +A DL Sbjct: 184 DVPEDWPGHVAQFLDQMERGVDEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLR 243 Query: 390 --------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 R HPY Y + + T GD +R +R+ E +S+ ++ AL + Sbjct: 244 ASGVPLDVRKAHPYCGYEAYDFNVISSTDGDSLARFTMRLLEFSESIKIIRQALARLKPG 303 Query: 442 PLLTEGFSY---------------------------KPHAFALGFVEAPRGEDVHWSMLG 474 + P VE RGE ++ + Sbjct: 304 LIKDPNRKISLPPRHELETSMEAVIHHFKLVTEGFHPPTGEVYVPVEGARGEVGYYIVSD 363 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +R + RA ++ N L Y G +D I+ ++DP DR Sbjct: 364 GGSVPYRVKIRAPSFVNLQALEYACVGAQFADLITILATIDPVLGDVDR 412 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 130/410 (31%), Positives = 200/410 (48%), Gaps = 66/410 (16%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 ++P GP H EP H +L ++ E +++A L YVHRG+E+L E R +N++ + Sbjct: 1 MARTILPFGPQHPVLPEPLHLKLTIENETVIEALPTLGYVHRGLERLCEIR-DFNQMIQI 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +RVCGIC H++ Y VE +G+EVP+RA +R+I E+ R+HSHLL LGL G Sbjct: 60 VERVCGICSCLHALCYCEGVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFADAFG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 F++ FMQF+RVRE+ M + E G+R +N+IGGVRRD+ EQ L + + ++ Sbjct: 120 FESLFMQFWRVRERIMDIMEATCGNRVVVSVNVIGGVRRDLSPEQCLWIEQQLALSEKEI 179 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPK 403 +L +L +++RT GIG+L ++ A L P YA + + Sbjct: 180 KQLQTTILNDYTVKKRTVGIGVLSKEKAYQLGAVGPMLRGSGWAQDARQTGYAAFDELGF 239 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--------------------- 442 GGD ++R VR +ET S+ ++ A+ MP Sbjct: 240 EPVVEYGGDSYARCAVRFRETLQSIDIVRLAIARMPAGETSVNVEGAMEDDTPRPVVAGE 299 Query: 443 -----------------------------LLTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 L+ KP A+ VE PRGE +++ Sbjct: 300 RRDIMQAYNRDKHHKITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKG 359 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ + R R R T+AN P L +L G ++D P+I+ S+DPC SCT+R Sbjct: 360 NGSKNMERVRIRTPTFANIPPLLAILPGCELADVPVIVLSIDPCISCTER 409 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 196/386 (50%), Gaps = 21/386 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IPVGP H EP + + DGE+IV+ + Y HRG+EKL E Y + F+ RVC Sbjct: 15 IPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRD-IFIVARVC 73 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H+ Y ++E L + +RA +R + +E ER+HSH+L + +GFD+ F Sbjct: 74 GICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLF 133 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M RE M E++ G+R +IGGVRRDI ++ + LK++ ++ + + Sbjct: 134 MNIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKK 193 Query: 364 MLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTLFT 407 + + + +R +G++ R D+R Y YG+IP + T Sbjct: 194 LFMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMVT 253 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG----FSYKPHAFALGFVEAP 463 GD ++R++VR E +SL M ++ L+++P+ P A VEAP Sbjct: 254 RNEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEAP 313 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ M K +R + + ++ N Y+ G+T++D P+I+ SLDPC SC +R Sbjct: 314 RGELTYYVMSDGKPKPYRLKIKTPSFTNIINSGYLYVGHTIADLPVILVSLDPCISCMER 373 Query: 524 VTLVDVRKRQSKTVPYKEIERYGIDR 549 VT++D+ + VP KE+ G R Sbjct: 374 VTVIDLENNTRRKVPIKELAGGGRKR 399 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 184/391 (47%), Gaps = 44/391 (11%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E + D + +GP H ++ +L ++GE ++ D + Y+H G+EK E+R Y++V Sbjct: 13 EESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRT-YHQV 71 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L DR+ + G A A+ ++E + IEVP+RA TIR ILLE+ R+ SHLL G S Sbjct: 72 FTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSAL 131 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + + FM F REK + + E + G+R L IGG+ +D+ + + + + Sbjct: 132 ELNMSSVFMYSFAEREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQ 191 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 EL +L +R QG+ ++D++I D+R +PY Y Sbjct: 192 KIWKELDRLLTDNFVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYE 251 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY--------- 450 N + T GD ++R +VR++E S++++E A+ + +LT Sbjct: 252 NYNFDIPTHIDGDSYARYLVRMEEMLQSISIIEQAIARLKPGVVLTNDRKVALPPRKELA 311 Query: 451 ------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 P VE+ RGE H+ + K +R R R+ ++++ Sbjct: 312 RSMEAVIHQFKLISEGLHPPVGSVYNCVESARGELGHYVISDGTPKPYRLRVRSPSFSHV 371 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 VL+ +LRG+ +SD + I S+DP DR Sbjct: 372 EVLKKVLRGHVISDVVVAIASVDPILGDVDR 402 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 338 bits (867), Expect = 4e-91, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 167/400 (41%), Gaps = 21/400 (5%) Query: 144 WPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFV 203 W A + D T F ++ ++ +GP H ++ L + Sbjct: 8 WSNGASCPAASADGGCADDQIAGDGYTCRFEQGARPESLILNMGPQHPSTHGVLRVLLEL 67 Query: 204 DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALG 263 DGE IV A+ L Y+HR EK+AE + + RV + A + AY +VE G Sbjct: 68 DGEYIVRAEPVLGYLHRMHEKMAEVKTPA-QFMPNMGRVDYLHALAWNWAYVGAVEKLAG 126 Query: 264 IEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGS 323 IE+P+RA +R I E+ R+ SHLL G +G T M F RE + + +L+ GS Sbjct: 127 IEIPERAEYLRVITCELNRISSHLLWWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGS 186 Query: 324 RKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDR 383 R TY GGV D + + +R+ + ++ + +R + +G++ + Sbjct: 187 RLTYSSFRFGGVYTDASPAFVQGVRQFIPHLRSRLPMYTALVTENIILRRRIEEVGVIPQ 246 Query: 384 Q----------------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDS 427 IA D+R PY+ Y + +R MVR+ E S Sbjct: 247 DMVTRYGASGPVARGSGIAYDVRRAEPYSVYDRFDYEIPVRHEECSMARYMVRMAEIEQS 306 Query: 428 LAMLEFALDNMPDTPLLTEGFSYK----PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWR 483 L ++E A++N+PD + P + VE RG+ W + +R + Sbjct: 307 LRIVEQAIENLPDGEHMHPKAPKPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVK 366 Query: 484 CRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RA ++N + RG ++DA I+GSLD DR Sbjct: 367 LRAPGFSNLALFAECARGTLLADAVAILGSLDMVIPEIDR 406 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 192/359 (53%), Gaps = 17/359 (4%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 +IP+GP H EP HF L + E+++DA + YVHRG+E+L E R + + ++ Sbjct: 3 QRNIIPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKR-DFIDFAHVA 61 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DR+CG+C F HS+ Y +VE + IEVPQRA +RSI E+ R+HSH+ LG + GF Sbjct: 62 DRICGLCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLGAAADAFGF 121 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 ++ FMQ R+RE + + E G R G+ +GGVRRDI + + + ++ + Sbjct: 122 ESLFMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALE 181 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNIPKT 404 EL + L +++ R G+G L R+ A L P YA Y + Sbjct: 182 ELSNVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRALGYAAYKYLEVE 241 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 + GD +R VR++E F ++ ++ A+ +P P+ + + P VE PR Sbjct: 242 PVVESAGDCHARCRVRIREIFHAIDLIRQAVGKIPAGPVDVK-VTGTPDGEYYSRVEQPR 300 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE +H+ + L R+R R T++N P + +L+G+ ++D P II +LDPC SCT+R Sbjct: 301 GEVIHYVKGNGARFLQRFRVRVPTFSNIPAMVKVLKGSQLADVPNIILTLDPCISCTER 359 >UniRef50_P56753 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic n=201 Tax=cellular organisms RepID=NDHH_ARATH Length = 393 Score = 337 bits (864), Expect = 7e-91, Method: Composition-based stats. Identities = 98/393 (24%), Positives = 159/393 (40%), Gaps = 43/393 (10%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 D ++ +GP H + + +DGE +VD + L Y+HRGMEK+AE R Sbjct: 2 KRPVTGKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAII 61 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL 292 + +++ R + N E I+VP+RA IR I+LE+ R+ SHLL LG Sbjct: 62 QYLPYVT-RWDYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGP 120 Query: 293 SCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR 352 +G T F FR RE + E G R + IGG+ D+ + L Sbjct: 121 FMADIGAQTPFFYIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCD 180 Query: 353 EMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYA 396 +V E +++ P +R +G+GI+ + A DLR Y Sbjct: 181 YFLTEVVEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYE 240 Query: 397 DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL------------- 443 Y + GD +R +VR+ E +S+ +++ AL+ +P P Sbjct: 241 SYDEFEWEIQWQKQGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRN 300 Query: 444 --------LTEGFSYKP-----HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 P VEAP+GE + + + +RW+ R + Sbjct: 301 PEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFI 360 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 N +L +++ ++D I+GS+D DR Sbjct: 361 NLQILPELVKRMKLADIMTILGSIDIIMGEVDR 393 >UniRef50_Q4P4N9 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P4N9_USTMA Length = 498 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 97/419 (23%), Positives = 159/419 (37%), Gaps = 70/419 (16%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD--------------------- 212 + + + GP H + L ++GE+I+ D Sbjct: 81 RKDRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSG 140 Query: 213 -----YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVP 267 + +HRG EKL E + Y + DR+ + + + Y+ +VE L IEVP Sbjct: 141 VCILQPHVGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVP 199 Query: 268 QRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTY 327 +RA IR++ E+ R+ +H + + VG T F+ F REK M E + G+R Sbjct: 200 ERAKWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFYERVSGARLHA 259 Query: 328 GLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA- 386 GGV D+ K + + V E+ E++ + RT GIG + Q A Sbjct: 260 AYVRPGGVAYDLPPGLLDDIHKWATQFGSRVDEIEEVVTGNRIWKGRTIGIGKVTAQEAL 319 Query: 387 ---------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAML 431 D+R PY Y + + GD + R + RV+E SL ++ Sbjct: 320 DYGFSGVMLRGSGIPWDIRKVAPYDAYDQVEFDVPVGKNGDCYDRYLCRVEEFRQSLRII 379 Query: 432 EFALDNMPDTPLLTEGFSY---------------------------KPHAFALGFVEAPR 464 E L+ MP + + P +EAP+ Sbjct: 380 EQCLNKMPAGQIKVDDHKLVPPPRATMKESMESLIHHFKLFSEGYAVPPGETYSAIEAPK 439 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE + + + +R + RA +A+ +M R + + D IIG+LD + DR Sbjct: 440 GEMGVYLVSDGTNRPYRCKIRAPGFAHLAGADFMARHHYIPDMVAIIGTLDLVFGEVDR 498 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 335 bits (860), Expect = 2e-90, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 182/357 (50%), Gaps = 18/357 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP GP H EP H L V E++++ ++ ++HRG+EKL E + ++ ++++R+C Sbjct: 7 IPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKK-DIHQFIYVAERIC 65 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC F HS+ Y +VE +G+EVP+RA +R IL E+ R+HSHLL LGL+ GF+ F Sbjct: 66 GICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAADAFGFEALF 125 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M +R+RE+ + + E G R IGGV RDI E+ Q + MR++ +EL+ Sbjct: 126 MHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYAELMA 185 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHPYA---------------DYGNIP-KTLFT 407 L ++ R +G L + A DL P+A YG + Sbjct: 186 TFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELENFQPIL 245 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA-FALGFVEAPRGE 466 GD ++RV VR KE S+ +++ + +P + P A +E PRGE Sbjct: 246 DDEGDCYARVRVRCKEVIQSIDIIQELIAKIPHDGIGERSKLTPPDGAQAANVLEQPRGE 305 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +++ ++ L R R R T N L G ++D P I+ ++DPC SCT+R Sbjct: 306 CYYYARGNGSKNLERMRMRTPTSQNLAGLVAACEGAELADVPNILLTIDPCISCTER 362 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 169/436 (38%), Gaps = 71/436 (16%) Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 R + + V+ +GP H + L +DGE +V AD + Sbjct: 2 NTERTMAGGPAPMRDGRRDTEIRNYVMNLGPQHPAAHGVLRLVLEMDGETVVRADPHVGL 61 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 +HRG EKLAE++ +N+ DR+ + + AY ++E LGIE P RA IR++ Sbjct: 62 LHRGTEKLAESK-PFNQSIGYMDRLDYVSMMCNEHAYVRAIETLLGIEAPIRAQYIRTMF 120 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 E+ R+ +HL+N+G +G + FR RE+ M E + G+R GGV R Sbjct: 121 DEITRILNHLMNIGTGALDLGAMAVMLYAFREREELMDCYEAVSGARMHATYYRPGGVYR 180 Query: 338 DILKEQ-------------------------RLQTLKLVREMRADVSELVEMLLATPNME 372 ++ ++ RE + E +L + Sbjct: 181 ELPEQMPKYKESRWKTGKQLRRLNAAREGSLLDFIENFTREFPNRIDEYETLLTDNRIWK 240 Query: 373 QRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 QRT GIG++ Q +A DLR PYA Y + + T GD + R Sbjct: 241 QRTVGIGVVSPQQAMEWGMTGVMLRGSGVAWDLRKKRPYAKYDAVDFDIPVGTAGDCYDR 300 Query: 417 VMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------------------------- 451 + RV E S ++ +D + P ++K Sbjct: 301 YLCRVAEMRQSNRIIRQCVDWLRANPGPVMLHNFKVAPPSRQEMKSDMEALIHHFKLFSE 360 Query: 452 ----PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 P VEAP+GE + + K FR RA +A+ L ++RG+ ++D Sbjct: 361 GYQVPAGETYAAVEAPKGEFGCYLISDGANKPFRVHLRAPGFAHLSSLDEIVRGHMLADV 420 Query: 508 PLIIGSLDPCYSCTDR 523 +IG+ D + DR Sbjct: 421 VAMIGTYDIVFGEVDR 436 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 334 bits (856), Expect = 6e-90, Method: Composition-based stats. Identities = 109/384 (28%), Positives = 173/384 (45%), Gaps = 21/384 (5%) Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 + ++ +GP H P L ++GE++ A + Y+H Sbjct: 8 PERPKYPTFREREEAEIKSDSEMIMHMGPQHAIVPGPFLLDLLIEGERVKKAFLDVGYIH 67 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 +G+EK+ E R Y + +DR+C + ++ AY +VE LGI P+RA IR IL E Sbjct: 68 KGIEKIMENRT-YLQGIVYTDRMCYLASITNNEAYCGAVEKLLGITPPERAQYIRVILAE 126 Query: 280 VERLHSHLLNLGLSCHFVGFDT--GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 + R+ SHLL G +G T F RE + + E + G+R T+ GGVR Sbjct: 127 LSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDREDIVYLMESITGARITHTFVRFGGVRN 186 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------- 386 D+ + +++ MR E +++L + P +R +GIG+L A Sbjct: 187 DLPDGFADKARPILKRMRERTEEYMDLLHSDPIYTRRMRGIGVLSPGDARRLGVSGPPLR 246 Query: 387 -----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 D+R + P Y ++ + T GD +RV VR++E +S+ ++E LD +PD Sbjct: 247 ASDTPYDMRREDPILVYPDLDFKVVTRKAGDAEARVEVRLEEILESIHIIEQCLDQIPDG 306 Query: 442 PL--LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML 499 P+ A VE PRGE + + ++K +R + R YA L +L Sbjct: 307 PIQEKLPKKIKPEPGEAYYRVEDPRGEMGFYVVSDGSEKPYRVKVRGPVYAYMQALPPLL 366 Query: 500 RGNTVSDAPLIIGSLDPCYSCTDR 523 G V+D I GS+D C S DR Sbjct: 367 EGAYVADVVAIAGSMDACTSEVDR 390 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 334 bits (856), Expect = 7e-90, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 158/369 (42%), Gaps = 20/369 (5%) Query: 174 INEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + + I +GP H + + +DGE + +A+ + Y+HR EK+ E R Sbjct: 32 MGHAPHETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRTWA- 90 Query: 234 EVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS 293 + + R+ + ++ A+ VE L IEVP+RA IR I E+ R+ SH + G Sbjct: 91 KFLPNTSRIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGAL 150 Query: 294 CHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE 353 +G T + F REK + + E L G+R TY GG+ D + T + V+ Sbjct: 151 LLDLGGFTPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKY 210 Query: 354 MRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYAD 397 MR + +++ + QR GIG + +A D+R PY+ Sbjct: 211 MRPRLKMYRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSV 270 Query: 398 YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---PHA 454 Y + + T+ D +R +VR+ E +SL ++E LD + P + P Sbjct: 271 YPKLQFKIPTYPECDSMARYLVRMDEMEESLNIIEQCLDLIQPGPFMAPKVPRVIRLPAG 330 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 VEA RG + + + +R R R ++ N + RG + DA ++GSL Sbjct: 331 DYTYAVEAARGRFMVRVVSDGKENPYRARLRTPSFGNLSLFEETSRGMLLPDALAMMGSL 390 Query: 515 DPCYSCTDR 523 D DR Sbjct: 391 DLVIPDIDR 399 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 135/512 (26%), Positives = 211/512 (41%), Gaps = 51/512 (9%) Query: 40 VKINLLPDVVQYLYYQHDGW----------LPVLFGNDERTLNGHYAVYYALSM---EGA 86 V + + L L + + + M + Sbjct: 14 VALADAIRAALQVRADGFARIEADAALWIGLAKACTAGWHDLGALWVDDHHVRMALWDAQ 73 Query: 87 EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPE 146 E C +V + A +PSV P A+ ER +RD+YG IP G+PD+RR + WP Sbjct: 74 ENCRAIVSLSLKA--GAYPSVGLHHPPALRLERAMRDLYGAIPDGIPDERRWLDHGVWPG 131 Query: 147 DMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 H Y F+ + IPVGP+H EPGHFR +GE Sbjct: 132 REHE------------------PGYHFLPVEGNGLHQIPVGPVHAGIIEPGHFRFTANGE 173 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 + + RL YVH+G+E LA+ + L+ R+ G A+S A++ +VE ALG E+ Sbjct: 174 TVARLEARLGYVHKGVEALAQG-ASIEKAAKLAARMSGDSTVAYSFAFSRAVEAALGWEI 232 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P RA +R ++ E+ERL H+ ++G C+ + +RE + L G R Sbjct: 233 PPRAQILRGVMAELERLSHHVSDVGGICNDAAVAVLLARCSLIREDILRTQAALFGHRMM 292 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI- 385 + GGV RDI L L+ + +V +P+++ RT G GI+ Sbjct: 293 MDAIVPGGVARDIDAAGATAILALLERIEIGFHRVVRAYDQSPSIQNRTHGTGIVQLDFI 352 Query: 386 ---------------ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 A D R PY Y + + T DV +R+ +R++E +S + Sbjct: 353 RQFAAGGFVGRAGGRAFDARASFPYPPYNAVAFKVPTREESDVDARIWIRIEEIAESAGI 412 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 + L + D P+ ++P VEA RG+ + D ++ R A++ Sbjct: 413 IRQLLAKLEDGPIHAAPPPFQP-GAGAALVEAFRGDLFLAVRIEDESRIAHMHARDASWF 471 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 WP+L + GN V+D PL S + YS D Sbjct: 472 QWPLLETAIDGNIVADFPLCNKSFNCSYSGVD 503 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 190/360 (52%), Gaps = 19/360 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + GP H EP +L +DGE + D + YVHRG+EK E YN+ +L++ Sbjct: 2 RSTVQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFE--WDYNKAAYLAE 59 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 RVCGIC HS + +VE+ + +E+P+RA IR+I+LE+ERLHSHLL +GL+ +GF+ Sbjct: 60 RVCGICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFE 119 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 FM FR RE + + E G+R +G+NL+GGV R+I E + + + + Sbjct: 120 NLFMLCFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRD 179 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 L +M++ + ++ R +G+GIL +Q A D+R D PY YG + Sbjct: 180 LEDMIVHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMK 239 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT-EGFSYKPHAFALGFVEAP 463 G DV++R +VRV+E F S+ ++ + + P P VE P Sbjct: 240 HVVEEGCDVWARSIVRVRELFQSIDLIRQLVPMLEGLPDDILAKSKTMPDGDGFARVEPP 299 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ +++L R + R +TYAN P L +++G ++D I S DPC C DR Sbjct: 300 RGELFYFVRGKKSKELDRVKVRTSTYANGPALIPVIKGCQLADVGPITISYDPCIGCFDR 359 >UniRef50_C7LSU9 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSU9_DESBD Length = 493 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 120/484 (24%), Positives = 199/484 (41%), Gaps = 45/484 (9%) Query: 55 QHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAA 114 + L FG + + L+++ + A + S +PS+TP+ P A Sbjct: 38 ESGARLCSWFGV---PDHDGTILVAVLALDSESILGV---ARSEPISGSYPSLTPKHPQA 91 Query: 115 VWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFI 174 ERE+ + +GL+PVG P + + R PF Sbjct: 92 HLFEREVWEQHGLVPVGHPWLKPV----------------------RHTFENAPANAPFF 129 Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 + + VGP+H EPGHFR GE+++ + L Y HRG+E + + Sbjct: 130 RVEGGEVHEVAVGPVHAGVIEPGHFRFQCAGEEVLHLEIALGYQHRGIEDALQNG-PHPA 188 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 + V G AH+ A+ + +E G+E P RA +R++ LE+ERL +H ++G Sbjct: 189 TMNQIETVAGDTTIAHATAHASVLEALGGVETPLRAQWLRAMALELERLANHTGDMGALA 248 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 V F ++R + + LL G+R GL GG R D+ +E+ + ++ Sbjct: 249 MDVAFLPTSAACGKIRGDFLNLTALLCGNRFGRGLIRPGGCRHDLEEERLKTLTERLKAH 308 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADY 398 ADV + + ++ R + +G++ A RD+RFDHP + Sbjct: 309 MADVEQAMAWFWDAASVRVRFRNVGVVHPSQATDIGLVGPAARACGLVRDVRFDHPAGWH 368 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALG 458 + + GD+F+R VR E S L L D + + +P + A+ Sbjct: 369 RFSHSPVAVWPSGDIFARARVRSLEIQRSGRYLFDQLAAPVDGDITAALPAPQPESLAVA 428 Query: 459 FVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 VE RGE H ++ + ++ ++ NW L LRG VSD P+ S + Y Sbjct: 429 LVEGWRGEVCHVALTDYFGRFRSYKITDPSFHNWTGLALSLRGTAVSDFPICNKSFNLSY 488 Query: 519 SCTD 522 D Sbjct: 489 CGFD 492 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 160/389 (41%), Gaps = 44/389 (11%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + + +GP H ++ L ++GE + D + YVH G+EK AE + Y +V Sbjct: 26 EQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIGYVHTGIEKTAEQK-AYWKVIP 84 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 + +R+ + + ++ A+ +VE L ++VP+RA +R I +E+ R+ SHL+ LG SC + Sbjct: 85 VVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVIHMELNRIMSHLVWLGTSCIDL 144 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G + FR RE+ + + E+ G R +GGV DI + + + + MR Sbjct: 145 GAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVIEDIPRGWTERVKRFTKTMRER 204 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQI----------------ARDLRFDHPYADYGNI 401 + +L QR + G +D + DLR PY Y + Sbjct: 205 SEQYSALLDRNEIFLQRMRHTGTVDEETLLGLGVTGPLLRATGNPWDLRKAAPYCSYDDF 264 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------------ 449 + T GD + R VR E +S A+++ A+D +P+ P +TE Sbjct: 265 RFRIPVGTEGDNYDRYRVRHAEILESCAIIDQAIDGLPEGPFITEDRKVALPPRHELATS 324 Query: 450 ---------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 P +E+PRGE + + K R R ++ N Sbjct: 325 MEALIHHFKLVTEGFRVPPGEVYHPIESPRGELGCFVRSDGSSKPARVHMRDPSFVNLQA 384 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R ++D + LDP DR Sbjct: 385 TAAATRDTYIADLVATLAMLDPILGGVDR 413 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 331 bits (848), Expect = 6e-89, Method: Composition-based stats. Identities = 129/439 (29%), Positives = 197/439 (44%), Gaps = 26/439 (5%) Query: 100 DSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYR 159 D R F ++ P + ER I D++GL PVGL D+R + WP M Sbjct: 76 DDRRFLALGNVRPGVIRIERAIHDVWGLTPVGLEDRRHWLDHGRWPSRMPLA-------A 128 Query: 160 LRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVH 219 P+ + + YPF+ IPVGP+H EPGHFR GE +V + RL Y H Sbjct: 129 QPMAPSAEPDRYPFLQAVGDGLHQIPVGPVHAGVIEPGHFRFHCQGEAVVRLEQRLGYQH 188 Query: 220 RGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLE 279 +G+E L + ++ + RV G A+S+A+ +VE A G EVP RAH +R ++ E Sbjct: 189 KGIEGLLQG-APLDKAARIVARVSGDSTVAYSLAFARAVEAATGCEVPARAHWLRGVMAE 247 Query: 280 VERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 +ER+ +H+ ++G C+ F +REK + ++L G R + GGV D+ Sbjct: 248 MERVANHVFDIGAVCNDAAFAVMLSHMGVLREKVLRANDVLFGHRLNMDRIVPGGVSLDL 307 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI-------------- 385 E L+ + + ++ TP++ RT GI+ + Sbjct: 308 SDEGVEALKHLLYGFGKLLEQGYQLYENTPSLSDRTVSTGIVQTSLIHRFGAGGFVGRAS 367 Query: 386 --ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL 443 D R Y Y + T+ T GDV +RV+VR E +SL ++ L MP+ + Sbjct: 368 GRGHDARETPSYPPYDKLDMTVPVLTEGDVNARVLVRFAEAKESLHLINRMLHEMPEGAV 427 Query: 444 LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 +G E+ RGE V W LG + + R ++ WP+L + GN Sbjct: 428 RVPLPEV--AGEGMGVAESFRGEVVVWLRLGADHVVERCHPHDPSWFQWPLLEAAIEGNI 485 Query: 504 VSDAPLIIGSLDPCYSCTD 522 V+D PL S + YS D Sbjct: 486 VADFPLCNKSFNCSYSGHD 504 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 127/447 (28%), Positives = 197/447 (44%), Gaps = 25/447 (5%) Query: 96 LVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDA 155 V + R PS+ ++P W ERE+ D+YGL G P+ LVL + P D PL Sbjct: 92 RVRPEDRTLPSLANKLPLLGWYEREMMDLYGLRFEGHPEPNPLVLHEGEPRDPAPLASGF 151 Query: 156 MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRL 215 + D + +P GP+ E F F GE I+ RL Sbjct: 152 DPAAPARDYAP--LPPIVPQVQGPDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHPRL 209 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 FY HR ME + L++RV GI AH++A+ +VE A+G P RA +R Sbjct: 210 FYKHRAMEGRFQGATLATGAV-LAERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYLRV 268 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 +L E+ERL++HL LG G + + E+ + L GSR GL GG+ Sbjct: 269 VLAELERLYNHLHYLGHLSKTTTLKVGEAEGHLLEERVKQINGRLTGSRFLRGLITPGGL 328 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA--------- 386 RRD+ K + + ++ ++ L T + R G L+RQ+A Sbjct: 329 RRDLD---ITGLDKALDSVNDEIDRYLQRLENTRSHLDRLMTTGRLERQVAFDQGACGPI 385 Query: 387 -------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 RDLR DHPYA+Y + ++ GGD +R MVR++E +SLA++ + Sbjct: 386 ERASNLDRDLRRDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGRTK 445 Query: 440 DTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLR 496 +L P LG+VEA RG ++ L ++ +L R + + +++NW V Sbjct: 446 PGEVLRFDVMEDADPQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKIKEPSFSNWRVFP 505 Query: 497 YMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + + D + S + DR Sbjct: 506 FTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_Q5P2H0 Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases n=15 Tax=Proteobacteria RepID=Q5P2H0_AZOSE Length = 551 Score = 328 bits (841), Expect = 3e-88, Method: Composition-based stats. Identities = 139/501 (27%), Positives = 217/501 (43%), Gaps = 25/501 (4%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 V + + L L+G+D R + +AV A + + + + Sbjct: 59 ARVDATQWSALALAVATAKG-RLVSLWGSDRRAMGDGFAVGAAYATAEG---LLWAELGL 114 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 D +P ++ AV +R D+ G+ D R + WP D PLR + Sbjct: 115 DVVRPAYPDISRFFVPAVRMQRAAHDLVGIDAEDSGDSRPWLRHGAWPADYFPLRIENTG 174 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 + YPF+ I VGP+H + EPGHFR V GE+++ + R Y Sbjct: 175 Q---ERFAPQPDNYPFVFVEGDGVHEIAVGPVHAGTIEPGHFRFSVVGEKVLRLEERFGY 231 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 H+G+E+ M +E L+ RV G A++ AY + E+A G+ VP+RA +R++L Sbjct: 232 THKGIERRFMG-MDIDEGARLAGRVSGDSTVAYAWAYAMAAESAAGVAVPERAAWLRALL 290 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 LE ER+ +HL +LG + F QF R+RE + G R GGV R Sbjct: 291 LERERVANHLGDLGALGNDAAFGFALAQFSRLREDWLRANFEAFGHRLLMDCIRPGGVAR 350 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------- 386 D+ Q + + A+V+EL ++ ++ R G + ++A Sbjct: 351 DLDAAAAAQLRRDAVALVAEVAELKDIYDEHAGLQDRFVTTGRVAPELAARLGLTGLAGR 410 Query: 387 -----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 DLR D P+ Y + T T GDV +RV VR E F+SL +++ L +PD Sbjct: 411 ASGQVADLRVDFPWPPYDKLAVTASTQFNGDVAARVAVRFDECFESLRLIDALLAALPDG 470 Query: 442 PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 PL + + A G++E RGE ++ R C ++ NWPV+ + Sbjct: 471 PLDA-PVAIRDAASGAGWIEGWRGEIFVALETDARGRIARCHCHDPSWQNWPVIEHASID 529 Query: 502 NTVSDAPLIIGSLDPCYSCTD 522 N V+D PLI S + YS D Sbjct: 530 NIVADFPLINKSFNLGYSAQD 550 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 328 bits (840), Expect = 5e-88, Method: Composition-based stats. Identities = 104/395 (26%), Positives = 168/395 (42%), Gaps = 49/395 (12%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + GP H + L +DGE IV A + Y+H G EKL E + +N+ Sbjct: 16 DQEFLYTLNFGPQHPATHTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGED-LDFNQYV 74 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + DR+ I FA+ A+ +VE +GIE+ R +R+IL E+ R+ HLL +G + Sbjct: 75 TIVDRMNYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGAAALD 134 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G TGF+ F REK + E G R +GG+ D+ + V+ R Sbjct: 135 LGALTGFLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFRK 194 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGN 400 +++ +L RT+GIG+L ++ A RDLR D PY Y Sbjct: 195 VHADICRLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYKE 254 Query: 401 IP--KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK------- 451 + + GGD ++R +VR+ E +S ++ A++N+P P+ + Sbjct: 255 LSGAFKIVCGKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKNA 314 Query: 452 -----------------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 P G E GE + + K FR R R + Sbjct: 315 TYRSIEGLIQHFELFMWNRRWETPVEEVYGANETANGELGFYLVADGTGKAFRARTRPPS 374 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + ++ V M+ G+ +SD P ++GSL+ + DR Sbjct: 375 FIHFAVFPMMMEGHQISDVPAVLGSLNIIAAELDR 409 >UniRef50_D2L9H0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9H0_9DELT Length = 494 Score = 327 bits (839), Expect = 6e-88, Method: Composition-based stats. Identities = 116/454 (25%), Positives = 172/454 (37%), Gaps = 35/454 (7%) Query: 86 AEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWP 145 + D +PS+TP P W ERE+ + +G++P G P + + Sbjct: 58 DHDGRLAFCRTAPLD--RYPSLTPDCPQCHWFERELYEQWGILPDGHPWLKPI------- 108 Query: 146 EDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDG 205 P + + + VGP+H EPGHFR G Sbjct: 109 --------RFTTPPGAGRPRPAPGVTDYFQVRGEEVHEVAVGPVHAGIIEPGHFRFQCFG 160 Query: 206 EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE 265 E++ + L + HRG+E + V + G HS+A+ +E G Sbjct: 161 EEVFHLEISLGFQHRGIEAMLAGGPDPRTV-HFMETAAGDTSIGHSLAHAAVIEALSGRT 219 Query: 266 VPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRK 325 P R I LE+ERL +H +LG VGF R+R + M LL G+R Sbjct: 220 APPRGRAIGRAALELERLANHTGDLGALAGDVGFLPTLSYCGRIRGDFLNMTALLCGNRF 279 Query: 326 TYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ- 384 GL GG D+ + R E+L A+ + R +G G L + Sbjct: 280 GRGLVRPGGTAFDVDTGLLRVLAGRLEAARRAAFGAAELLFASSTVLARFEGTGKLTAEK 339 Query: 385 ---------------IARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLA 429 +ARD R P G L GDV++R +VR E SL Sbjct: 340 ALDLGLVGPPARACGLARDARRTFPQPGAGARDIALSLHDFGDVYARGLVRRLEMEASLD 399 Query: 430 MLEFALDNMPDTPLLTEGFSYKPHAF-ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 L+ L ++PD P P A+G +E RGE H ++ G + + ++ + Sbjct: 400 FLDGLLADLPDGPTRELLPGRLPPGRLAVGLIEGWRGEIRHVAVTGPDGRFLAYKIIDPS 459 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + NW L LRG +SD PL S + Y D Sbjct: 460 FHNWFGLAQALRGQQISDFPLCNKSFNLSYCGHD 493 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 99/401 (24%), Positives = 171/401 (42%), Gaps = 50/401 (12%) Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 + + ++ GP H ++ L + E IV A + Y+HRGMEK+AE M Sbjct: 13 NITFDREDNEMILNFGPQHPSAHGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAEN-MI 71 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 YNE +DR+ I A++ + +VE +G+EVP+RA IR +LLE+ RL SHL L Sbjct: 72 YNEFMPTTDRMDYIASSANNYGFALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWLA 131 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 + +G T F+ FR RE M + E G+R T+ IGGV DI Q + Sbjct: 132 TTALDIGAMTVFLFAFREREYLMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKTFL 191 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPY 395 ++ ++ + ++L R + +G++ ++ +A D+R + PY Sbjct: 192 DKLPQNIKDYEDLLDTNRIWLMRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEEPY 251 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT-------------- 441 Y + + GD F+R + ++E +S +L +D Sbjct: 252 ELYDEVEFRVPYSDKGDNFARYRIYMEEMRESAKILYQTIDMYEKCVKDNQTELMAHAPK 311 Query: 442 -------PLLTEGFS------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRW 482 ++T+ +S P E+P+GE + +R Sbjct: 312 YISAPKLDIMTQNYSLMQHFVLVTQGMRPPVGEVYVATESPKGELGFYINSQGGPYPYRL 371 Query: 483 RCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + RA ++ + +L +L G+ + D IIG+ + + DR Sbjct: 372 KLRAPSFWHTGILTDILPGHYIPDVVSIIGTTNIVFGEVDR 412 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 325 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 143/501 (28%), Positives = 221/501 (44%), Gaps = 36/501 (7%) Query: 39 TVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVD 98 V L + L+ L ++ +D+ V Y + G + ++ +V Sbjct: 10 RVSERGLIATAEQLWADSF-RLALVAAHDD---GDSLRVVYLF-LAGYPDRRVELEYVVP 64 Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 AD+ E S+ A ERE+ D+YG+ PVG P RRLV WP D HP+R DA Sbjct: 65 ADNPEIRSLAYLSFPAGRFEREMADLYGIRPVGHPKPRRLVRHAHWP-DWHPMRTDAGPA 123 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 TD+ +PF+ IPVGP+H EPGHFR V GE IV RL++V Sbjct: 124 PE----FTDTGAFPFLAVEGPGVYEIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFV 179 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG+EKL R L++R+ G AH++A++ ++E+ALGIE+P H +R++++ Sbjct: 180 HRGIEKLFHGR-PATAAVDLAERISGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIV 238 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ERL++H +LG + VG+ R+RE + + G R G GGV Sbjct: 239 ELERLYNHAADLGALANDVGYSLANAHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALR 298 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA------------ 386 L + + + D++E+ + LA + R G +L A Sbjct: 299 ALPDT-----DELAALAVDLAEVATLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARA 353 Query: 387 ----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALD-NMPDT 441 D R +HP +P T GDV +R VR E S A+ + ++ + Sbjct: 354 SGLRSDARVEHPTIV---LPITEIGAPDGDVLARYTVRRDEFAASAALAQHIVESHTGPI 410 Query: 442 PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 + +G VE RG VH + + ++ R + ++ NWP L + Sbjct: 411 EYAATLHPVGAPSSGIGIVEGWRGTIVHRVEIDVDGRITRAKVVDPSWFNWPALPVAMAD 470 Query: 502 NTVSDAPLIIGSLDPCYSCTD 522 V D PL S + Y+ D Sbjct: 471 TIVPDFPLANKSFNQSYAGND 491 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 129/452 (28%), Positives = 190/452 (42%), Gaps = 23/452 (5%) Query: 87 EKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPE 146 + +++ + D+ FPS++ P A ER I D++GLIP GL D R + W Sbjct: 67 REGLVLLSLSLPKDAVSFPSLSSIFPPAARFERTIHDLFGLIPDGLADLRPWIDHGLWSH 126 Query: 147 DMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 YPF+ IPVGP+H EPGHFR V GE Sbjct: 127 ------PPLSHTPSPLTRLAQGMDYPFVRVRGDGVHEIPVGPVHAGIIEPGHFRFSVVGE 180 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 +++ + R+ Y H+G+ +L R E L+ R+ G A S+A++ +VE AL IE+ Sbjct: 181 KVLRLETRMGYTHKGIARLFRGR-NLPEAARLASRISGDSAVATSLAFSKAVEEALDIEI 239 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 + +R+ILLE ER+ +HL +LG + G F +RE + L G R Sbjct: 240 SEGVRFVRAILLERERIANHLADLGALGNDAGLAVALSLFHPLREAMHRINLSLFGHRLL 299 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA 386 + + GGV + L ++A+VS L + ++ R Q GIL ++A Sbjct: 300 FDSVVPGGVSTGLSGAMIETLLLENERLQAEVSLLERIYADHGGLQDRFQNTGILSPEVA 359 Query: 387 ----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 DLR DH L GDV SRV +R E F+SL + Sbjct: 360 GRLGIGGVAGRASGQGWDLRVDHREDPVHRFAPALALDHIGDVASRVRIRFFEIFESLRL 419 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 L + P + G VE RGE + W + + L + Sbjct: 420 THALLTSFPGPDICATIPDPPAPREGAGIVEGFRGEVLGWVRILPGKILADAHIADGSPL 479 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 W L + GN V+D PLI S +P YS +D Sbjct: 480 LWHALEASVPGNLVADFPLINKSFNPSYSASD 511 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 157/370 (42%), Gaps = 26/370 (7%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 D + +GP H ++ F + DGE I A + Y+HR +EK+ E R Y+ Sbjct: 20 DDEMTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGE-RCTYSGFMPY 78 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +DRV I + A+ ++ E +GIEVP+RA +R I E+ R+ SH++ LG VG Sbjct: 79 TDRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAMAMDVG 138 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 T F R RE E L G+R T+ + IGGV D+ K + + + Sbjct: 139 AVTPFPWALREREYINDFIEELCGARLTFNYHRIGGVSFDMPKGWADKVKHWLDRFEPIM 198 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 E ++ +R + ++ + A DLR + Y+ Y + Sbjct: 199 VEFDRLISLNDIFIKRLANVAVVTAEEAKDWGLVGPNLRGSGVKWDLRKEDAYSVYPELE 258 Query: 403 KTLFT-----FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP----LLTEGFSYKPH 453 + T GD + R VRV+E +S +L ALD + + P L +P Sbjct: 259 FDVPVGRGRYGTVGDCWDRFYVRVEECRESAKILRQALDKIDEHPEDDILGKLPKKMRPD 318 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 A +E+ RG+ + + ++ +R R R ++ ++ G ++D +I S Sbjct: 319 GEAYARIESARGDMGCYVIGRGAEEAYRARFRTGSFTAMAMIEAKSPGLFLADLVALIAS 378 Query: 514 LDPCYSCTDR 523 D DR Sbjct: 379 FDVVAPEIDR 388 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 323 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 166/368 (45%), Gaps = 24/368 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + GP H ++V+G+ +V A ++HRG EKL E R+ Y L Sbjct: 1 MGEVKLFFGPNHPGMHGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQN-LAL 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 R+C + + Y +VE I+VP+RA IR I+LE+ R+ +HL + +G Sbjct: 60 IPRICVPEPDINELCYALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGPIG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 TG R++ + + E L G+R + + GGVR+D+ + L+ + + + + Sbjct: 120 LYTGSFWGTADRDRILDIFENLTGARVYHMYIVPGGVRKDLTPKIEKMILETLDYIESRL 179 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIP 402 + +++L + R +GI LDR+ A D+R PY Y + Sbjct: 180 PDYEKLILKNRIVHTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVD 239 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------YKPHAFA 456 + T GD F+RV ++ +E F S+ +++ AL+ MP + T P A Sbjct: 240 FEVPFSTDGDAFARVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQA 299 Query: 457 LGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTVSDAPLIIGSLD 515 +E+ RGE ++ + +K +R R A+Y + + L G + D P+ + ++D Sbjct: 300 YVHIESTRGEYGYYMVSDGGEKPYRVVVRGASYPQTFIGVEKYLPGTRIEDVPIWLSTMD 359 Query: 516 PCYSCTDR 523 C DR Sbjct: 360 VCAPEVDR 367 >UniRef50_D2R4P3 NADH dehydrogenase (Quinone) n=3 Tax=Planctomycetaceae RepID=D2R4P3_9PLAN Length = 401 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 158/395 (40%), Gaps = 42/395 (10%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 + +D ++ +GP H ++ L DGE + + L Y+HR EK+ E Sbjct: 8 PRVVEFDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEIVSQVEPHLGYLHRCAEKIGENL 67 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 + +DR+ + ++ + +VE LG ++ ++A +R I+ E+ R+ SHL+ Sbjct: 68 TP-RQWIPYTDRMDYLAAMNMNLGWALTVEKLLGHQISEKARHLRVIIAEMGRIASHLVG 126 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 +G +G + F+ FR REK + + E G+R TY GG D+ K + + Sbjct: 127 MGAYGLDLGTFSPFLYAFREREKILDLFEEACGARLTYSYLTPGGATADLPKGWLQKCEE 186 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPY-------------- 395 +++ + E +L +RT IGI+ ++A D P Sbjct: 187 FLKQFEPVIQEYHALLTTNSIFVKRTAAIGIMSAEMAIDYGCTGPVLRGSGVDYDLRRDG 246 Query: 396 -----ADYGNIPKTLFTFTG------------------GDVFSRVMVRVKETFDSLAMLE 432 Y + GD + R VR+ E S+ ++ Sbjct: 247 EERYTEMYDGYAFEVIVSRNGHYPADHDYPPVPKEAVLGDCWHRFYVRMLEVVQSIDLVR 306 Query: 433 FALDNMP----DTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 A++ D + + P A E PRG+ + + N +R R R+++ Sbjct: 307 QAIERYSTASGDWGQPIKLTTKLPKGEAYLETECPRGQMGFYIVSDGNAIPWRVRARSSS 366 Query: 489 YANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + N + + RG ++D P I+GSLD DR Sbjct: 367 FCNLSITADLCRGCLIADVPAIVGSLDIVMGEIDR 401 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 322 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 127/441 (28%), Positives = 190/441 (43%), Gaps = 34/441 (7%) Query: 99 ADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDY 158 FPS+ PA W ERE+ + +GL+P G P + L Sbjct: 2 EAQGSFPSLAEEFPALDWFERELWEDHGLVPEGHPSLKPLRNH--------------HSV 47 Query: 159 RLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV 218 R P+ + +PVGP+H EPGHFR V GE+I+ + RL Y Sbjct: 48 YSRQAVPKGIVRLPYPFDRVEGLHEVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQ 107 Query: 219 HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILL 278 HRG+E+L + + + L++R G AH++A+ +VE ALG+EVP RA+ +R +LL Sbjct: 108 HRGVEQLFQGK-SLEQALLLAER-AGGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVLL 165 Query: 279 EVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD 338 E+ERL HL +L +G+ Q +VR E L G R +GGV D Sbjct: 166 ELERLFGHLGHLAGLFTDIGYAYAATQVGKVRALLQGQLERLTGHRYGRNALTVGGVGFD 225 Query: 339 ILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYADY 398 I E +++ + ++ A+ + L P + R + +G L + AR L P A Sbjct: 226 IDPETQVEVRGALAKLAAEAETHLAAALKHPMVLDRLRYVGTLTQAQARWLGLVGPAARA 285 Query: 399 GNIP------------KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-----DT 441 + T +GGDV +R V +E L+ L +P + Sbjct: 286 CGLGRDLRQDDALYQTFTPVVRSGGDVLARAQVYAEELRQGFVYLDRFLGALPQGEVANG 345 Query: 442 PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 P A A VEA RGE +W L N ++ R + ++ NW L +RG Sbjct: 346 PTTPRVDPVPATAEAYSRVEAGRGELFYWVRLRGN-RVERVKIVDPSFKNWRALELAVRG 404 Query: 502 NTVSDAPLIIGSLDPCYSCTD 522 + D P+I S D Y+ D Sbjct: 405 MGLPDFPIINKSFDLSYAGCD 425 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 190/361 (52%), Gaps = 20/361 (5%) Query: 181 ARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 I GP H EP +L DGE I D D YVHRG+EK E YN+ +LS+ Sbjct: 2 RTTIQFGPQHPVWIEPLRLKLTTDGELIKDVDLEAGYVHRGLEKKFE--WDYNKAAYLSE 59 Query: 241 RVCGICGFAHSVAYTNSVEN-ALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 RVC IC HS + VE G+E+P+RA IR+I+LE+ERLHSH L +GL+ +GF Sbjct: 60 RVCAICTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGF 119 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + FM FR RE+ + + E G+R +G+N++GGV R+I E + L ++ Sbjct: 120 ENMFMLCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAH 179 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPK 403 E+ +++++ ++QR QG+G++ ++A D+R P+ Y + Sbjct: 180 EIERIIVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKV 239 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP-LLTEGFSYKPHAFALGFVEA 462 T GD ++R +VRV+E F S+ ++ + + TP L P + VEA Sbjct: 240 TPIVEKDGDCWARSLVRVRELFQSIDLIRQLVPLLDGTPDELFAKSKAMPEGENIARVEA 299 Query: 463 PRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 PRGE ++ +++L R + R +TY N + +++G+ ++D LI + DPC C D Sbjct: 300 PRGELFYYVRGKKSKELDRVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGCFD 359 Query: 523 R 523 R Sbjct: 360 R 360 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 113/412 (27%), Positives = 182/412 (44%), Gaps = 45/412 (10%) Query: 155 AMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYR 214 E + VGP H S + ++G+ I D D Sbjct: 1 MTSQPQNEAQEQLLAATGMSVEFIPVQGELNVGPQHPGS-GHMRIFVKLNGDIIEDVDLD 59 Query: 215 LFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIR 274 + YVHR +EKL+E R Y + L +R + ++ Y +VE LG++VP+RA +R Sbjct: 60 VGYVHRTVEKLSENR-NYMHLIPLVERPAILDSIHMNLGYIIAVEKILGVDVPERAQYLR 118 Query: 275 SILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGG 334 S EV R+ SHL LG+ F+G TGFM F RE +T+ E L G+R T + GG Sbjct: 119 SFAAEVNRIASHLYGLGILSIFLGHSTGFMWGFGDREVWVTILEALTGARVTNSYVIPGG 178 Query: 335 VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA-------- 386 VRRDI +E + TLK + R + + ++ P++ R + +G++ ++ A Sbjct: 179 VRRDISQEIKDMTLKAISYQRRRLEDWKKIFFYNPSIRARLENVGVMSKENAIKWGAVGP 238 Query: 387 --------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM 438 D+R PY Y + + + GD +R +VR++E S+ +LE + N+ Sbjct: 239 NLRASGVYYDVRKIEPYGAYDKLDFEIPVYKEGDGLARGLVRLEEIEQSMRILEQIIKNI 298 Query: 439 PDTPLLTEGFSY---------------------------KPHAFALGFVEAPRGEDVHWS 471 P+ +L++ F P A+ VEA RGE V++ Sbjct: 299 PEGNILSDRFFKQIPPTRLKKYWETYRRIVLPGYYASFRPPKGEAISRVEAGRGELVYYV 358 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + K +R R +Y + V + + +G+ +D I GSLD DR Sbjct: 359 VSDGSPKPYRLRMITPSYRSIYVFKELCKGSRYADLVSIYGSLDYFPPEADR 410 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 84/416 (20%), Positives = 157/416 (37%), Gaps = 43/416 (10%) Query: 150 PLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIV 209 + R + + +D ++ +GP H ++ L DGE + Sbjct: 4 SFKHPCWHQRNEAVMEMAPTSGIVEIDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVS 63 Query: 210 DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQR 269 +A + Y+HR EK+ E + +DR+ + G ++ + +VE + ++P++ Sbjct: 64 EATPHIGYLHRCAEKIGENLTP-RQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEK 122 Query: 270 AHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGL 329 A +R I+ E+ R+ SHL+ +G +G + F+ FR RE+ + + E G+R TY Sbjct: 123 ARHLRVIIAELNRIASHLVGMGTYGLDLGSFSPFLYAFRERERILDLLEDACGARLTYSY 182 Query: 330 NLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL 389 GG D+ + + + + + +L +RT IG++ ++A D Sbjct: 183 LTPGGATADLPPGWLQKLTGFLDQFEPVILDYHALLTNNAIFIKRTANIGVMSAEMAIDY 242 Query: 390 RFDHPY-------------------ADYGNIPKTLFTFTG------------------GD 412 P + Y + GD Sbjct: 243 GCSGPVLRGSGVDYDLRRDGEERYTSLYAGYAFEVIVEKNGSYPRDHEYPPVPSDAVLGD 302 Query: 413 VFSRVMVRVKETFDSLAMLEFALDNMP----DTPLLTEGFSYKPHAFALGFVEAPRGEDV 468 + R VR+ E ++ +L ++ D + + P A E PRG+ Sbjct: 303 CWHRFYVRMLEVIQAIDLLRQGIEKYSQATGDWGTPIKLATKLPKGEAYLETECPRGQMG 362 Query: 469 HWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + + + R R R++ + N V + R ++D P IIGSLD DR Sbjct: 363 FYIVSDGSGSIPLRARARSSCFCNLSVAPELCRDCLIADVPAIIGSLDIVMGEIDR 418 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 321 bits (822), Expect = 5e-86, Method: Composition-based stats. Identities = 88/419 (21%), Positives = 150/419 (35%), Gaps = 44/419 (10%) Query: 147 DMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGE 206 + P A + + S + +GP H + +DGE Sbjct: 13 EATPGSFGAGEPPRALGQAGLAAENELDAPLASKLMTVNLGPSHPAMHGVTRAVVELDGE 72 Query: 207 QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV 266 I + ++HRG EK E + +DR+ + ++V + +VE ++V Sbjct: 73 MIRSMKLDIGFLHRGFEKSCENVTW-TQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDV 131 Query: 267 PQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKT 326 P+RA +R + E+ R+ HL +G +G T F+ R+ L G+R T Sbjct: 132 PERAKYLRVVTSEIHRICDHLTLVGAMAMELGAMTVFLYAIEARDIIYDRLAELCGARLT 191 Query: 327 YGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA 386 IGGV RD +T K + ++ V E+ +++ RT+G G++ R A Sbjct: 192 SNYGRIGGVARDTPDGWIEKTEKTLDRVKGYVDEIDQLVSRNRIFIDRTRGTGVVPRADA 251 Query: 387 ----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 DLR PY Y I + T GD F R +R++E S + Sbjct: 252 IELGFTGPCLRASGEPYDLRKAAPYLVYDRIDFDIPVGTNGDNFDRFQMRMEEMRQSDRI 311 Query: 431 LEFALDNMPDTPLLTEGFSY---------------------------KPHAFALGFVEAP 463 + M + + F Y P A G+ EA Sbjct: 312 IRQCFAQMEPGEIAVQDFRYVLPPKPLVYGTIEGLMAHFKIIMEGIQVPAGEAYGYTEAA 371 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 GE + + + ++ RA + L +M G+ +SD S++ + Sbjct: 372 NGELGFYVVSDGGGRPYKLGLRAPGWPMLAALPFMSVGSLLSDLIPTFDSINMIGGEVE 430 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 320 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 167/396 (42%), Gaps = 48/396 (12%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 E + + +GP H + +L ++GE +V A+ ++H G+EK AE + +N+ Sbjct: 10 EEQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAE-HLTWNQ 68 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNLGL 292 T + DR+ + +++ Y +VE LGIE +P++A R ILLE+ R+ SHL+ LG Sbjct: 69 ATTVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGT 128 Query: 293 SCHFVG-FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 G T F +R++ + + E G R +GG+ D+ + + Sbjct: 129 GGLDYGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFL 188 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPY 395 + + EL +++L P R +G+ ++ + A D+R +PY Sbjct: 189 KVAPGRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPY 248 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY----- 450 Y N + +T GD +SRV + E F+SL ++ ALDN+P Sbjct: 249 LGYENYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDDRKLVLPP 308 Query: 451 -----------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAA 487 P +E+PRGE + + K R R R Sbjct: 309 KQEVKHSMEALIHHFKLVHHGFDVPAGEVYVSIESPRGEIGFYVVSDGGNKPMRVRVRPP 368 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ L +L G+ +SD I ++DP + DR Sbjct: 369 SFYAVYSLPVLLEGHLLSDMVGAIATIDPVFGEVDR 404 >UniRef50_Q21TB4 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21TB4_RHOFD Length = 498 Score = 316 bits (811), Expect = 1e-84, Method: Composition-based stats. Identities = 121/507 (23%), Positives = 208/507 (41%), Gaps = 48/507 (9%) Query: 40 VKINLLPDVVQYL--YYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 + L +++Q Q L LFG L + V A+ ++ A+ ++++A Sbjct: 15 IAATSLQELMQLCGQRLQAGERLLTLFGRPAPELGVNIIVVTAV-LQPAQGALVILRATA 73 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 + +T + PAA ERE+ + GL P P + + Sbjct: 74 QR-GEHYRCLTAQHPAAQIFERELWEQTGLFPDDHPWLKPV------------------- 113 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 R E YPF + + VGP+H + EPGHFR GE + + +L Y Sbjct: 114 -RFEGERQQRMLEYPFFKVRGQEVHEVGVGPIHASVIEPGHFRFMCLGENVHHLEIQLGY 172 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 HRG+E L R ++T L + +CG A++ Y ++E V R+I Sbjct: 173 QHRGVEGLLL-RRPVWQLTPLVESICGDSAVAYAWGYGAALELMSNQPVAPAIQASRAIA 231 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 LE+ER+ HL LG + F G + R+R + ++ + G+R G G + Sbjct: 232 LEMERIAMHLATLGGMATDIAFLQGGATYGRLRTAIINASQRVCGNRFGRGWIRP-GQAK 290 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL-------- 389 + + + + +R D +++ +++LA +++ R G G + +Q A DL Sbjct: 291 PLSEALQQDLTRTLRAFAPDFTQINQLMLAARSVQARLHGTGTVSQQAALDLGLTGPVAR 350 Query: 390 --------RFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM--- 438 R P A YG+ P + T GD ++R+ +R++E SLA L L + Sbjct: 351 ASGVALDHRTQWPGAAYGHAPLPMVTEPDGDCWARMRLRMREVDASLAWLLQLLGDTTLN 410 Query: 439 ---PDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVL 495 + + + A + VE RG + +L ++ + + ANW L Sbjct: 411 LSQAGQAQSSTPAALQAEALCVSLVEGTRGPVLQVLETSAKGELRHYKVQDPSTANWFGL 470 Query: 496 RYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + +R N +SD P+ S D Y D Sbjct: 471 AFAMRDNAISDFPICNKSFDLSYCGND 497 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 101/406 (24%), Positives = 168/406 (41%), Gaps = 45/406 (11%) Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 PE NE S+ V+ +GP H + L +DGE+I++A+ + Y+HR Sbjct: 7 PPEHRYAKIIKERHNEDGSELSVLNLGPTHPATHGIFQNILLMDGERILEAEPTIGYIHR 66 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 EK+AE R Y ++T L+DR+ +++ + ++E LGIEVP+RA +R I++E+ Sbjct: 67 AFEKIAENRPFY-QITPLTDRMNYCSSPINNMGWWMTLEKLLGIEVPKRAQYLRVIVMEL 125 Query: 281 ERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL 340 R+ H++ + G TGF+ F+ REK + E + G+R T + IGG RD Sbjct: 126 ARITDHIICNSILGVDTGAYTGFLYVFQFREKIYEIYEEICGARLTTNMGRIGGFERDWS 185 Query: 341 KEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA-------------- 386 E + K + E E + RT +G + + A Sbjct: 186 PEAFRKLDKFLEEFPPAWKEFENLFERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAG 245 Query: 387 --RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 D+R HPY+ Y + + GD + R VR E ++SL+++ AL+ MP Sbjct: 246 VDYDVRVAHPYSSYEDFDFIVPVGKSGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEY 305 Query: 445 TEGFS----------------------------YKPHAFALGFVEAPRGEDVHWSMLGDN 476 P + VE GE + + Sbjct: 306 HAEVPDYYLPPKEDVYNSMESLIYHFKIVMGEVPVPVSEIYHAVEGGNGELGFYLATDGS 365 Query: 477 QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + +R R + + M++G +SDA +I+ SL+ D Sbjct: 366 RTPYRLHFRRPCFIYYQAFPEMIKGALLSDAIIILSSLNVIAGELD 411 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 184/360 (51%), Gaps = 17/360 (4%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 + ++P G H+ EP F E I D + YVHRG+EK A TR Y ++ +L Sbjct: 3 NKIIVPFGSQHVALPEPVSFLFETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLV 62 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 RVCG+C H+ AYT+ +E LGIE ++ +R +++E++R+HSH+L G VG+ Sbjct: 63 ARVCGLCSITHAGAYTHGIEKLLGIETNKKIDYLRMLVVELDRIHSHMLANGHVAEVVGY 122 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + FMQ FR RE M + E + G+R Y +IGGV RD KE + + ++A+ Sbjct: 123 ENLFMQTFRYREDVMDILERITGNRVQYDYQIIGGVARDFDKETEDFAREKLLTLKANTE 182 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 +L+E +T+G+G + +++A D R ++ Y + + Sbjct: 183 KLIEFFENDYTFALKTKGVGTISKEMAEKFNAAGPIARASGLETDARAEYDYLPFEEVGY 242 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAP 463 L T T GDV++R MVR E +S+ M LD +P+ + +P VEAP Sbjct: 243 KLQTRTEGDVWARNMVRFDEIMNSIEMCLNILDGIPEGEHRVK-VKGRPDGETFVRVEAP 301 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RGE ++ + L R R R TYAN PVL+ + G SDA I+ S DPC SCT R Sbjct: 302 RGECFYYLKGNKTKVLERVRIRVPTYANIPVLKELFVGEKYSDAQAIVLSFDPCMSCTAR 361 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 159/380 (41%), Gaps = 24/380 (6%) Query: 167 DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLA 226 E Y + S + GP H + ++ + G+++V Y+HRG EK+ Sbjct: 2 RPENYQPVEHPASHEYELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIM 61 Query: 227 ETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSH 286 E R+ V L R+C Y +VE G+EVP+RA IR ++LE+ R+ +H Sbjct: 62 EERLWIQNV-ALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAH 120 Query: 287 LLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 L G + G + R+ + + E L G+R GGVRRDI + Sbjct: 121 LFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDR 180 Query: 347 TLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLR 390 +++ + A + E ++ P +R +GIG + ++ A D+R Sbjct: 181 LGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVR 240 Query: 391 FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD--TPLLTEGF 448 + PY Y + + T TGGDV R+ VR E +S +L + +P P+ Sbjct: 241 RNDPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLP 300 Query: 449 SY----KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNT 503 + P A EA +GE +++ K +R R + + VL + G Sbjct: 301 NPLAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGAR 360 Query: 504 VSDAPLIIGSLDPCYSCTDR 523 + D +I+ SLD C DR Sbjct: 361 IEDIAMIMFSLDACPPEVDR 380 >UniRef50_Q3JMD7 Hydrogenase subunit n=33 Tax=Burkholderia RepID=Q3JMD7_BURP1 Length = 567 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 147/568 (25%), Positives = 224/568 (39%), Gaps = 79/568 (13%) Query: 26 LDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEG 85 + P V +V + + + L L+G G Y V A ++ Sbjct: 7 IASAAGQPRAVFASVDADAWTRAAETIRTAGG-RLVTLWG--GEPAAGRYEVCAAYELDD 63 Query: 86 AEKCWIVVKALVDA----------------------------DSREFPSVTPRVPAAVWG 117 W+ + A ++ +P ++ +A Sbjct: 64 G-LLWLRLPVEPAANVGREAGDTSNAGNASNAGDADGVRQRGEAGSYPDLSAIFASATRM 122 Query: 118 EREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEG 177 +R + D+ GL G D R + WP D HPLR+ A T D YPF+ Sbjct: 123 QRALHDLVGLRARGAHDTRPWLAHGAWPRDYHPLRRRATGGERFEYATAD---YPFVPVA 179 Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 I VGP+H EPGHFR V GE+++ + RL Y HRG+E+L E R + Sbjct: 180 GDGVHEIAVGPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFE-RADALAGSR 238 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L+ R+ G A + AY ++E AL I VP RA +R++LLE ER+ +HL +LG + Sbjct: 239 LAARIAGDSTVAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDA 298 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 GF G F R++E + M + + G R + GGV RDI + + + + Sbjct: 299 GFAVGLAHFSRLKEDWLRMQDRIFGHRYLMDAIVPGGVARDIAADDAAAIVAQCDRIERE 358 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNI 401 V + + ++ R G G LD Q RD+R DH A Y + Sbjct: 359 VRAMQTIYDDQSGLQDRFAGTGRLDAQAVAHFGVCGLAARASGQPRDVRADHRLAPYDAL 418 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---------- 451 + GDV +RV VR ET++S+ + L ++PD L E Sbjct: 419 RIDVSRDARGDVAARVAVRFAETYESMRAIRALLADLPDDGLAAEIAPGATVPGARADAG 478 Query: 452 -----------------PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV 494 +G++E RG L + R C ++ NWP Sbjct: 479 GACEGEEGGDAAFCPGDARRRGIGWIEGWRGPVFVALELDARGAVARCHCHDPSWHNWPA 538 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 L + + GN V+D PLI S + Y+ D Sbjct: 539 LEHAIIGNIVADFPLINKSFNLNYAGHD 566 >UniRef50_A1ALP2 NADH-quinone oxidoreductase subunit D n=1 Tax=Pelobacter propionicus DSM 2379 RepID=NUOD_PELPD Length = 403 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 82/404 (20%), Positives = 159/404 (39%), Gaps = 44/404 (10%) Query: 163 EPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM 222 + + ++ +GP H + +DGE++ AD Y+HRG Sbjct: 1 MEYKSPVRSNLEQTADPNHVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGF 60 Query: 223 EKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVER 282 EK +E Y+++ +DR+ ++ AY VE LGIE+ R +R++L E R Sbjct: 61 EKESEHHT-YHKIIPFTDRLNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNR 119 Query: 283 LHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 + H+ + + +G T F+ +R+ L G+R TY +GG++ D+ Sbjct: 120 VADHVTCVAATVMEMGAMTAFLYLMTIRDYIFEHLNQLTGARLTYSFARVGGLKNDLPDG 179 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR--------------- 387 + ++++ + +L RT+ +G + + A Sbjct: 180 WLERLEEILQFTEKYCGRIHGLLDRNRIFIDRTRDVGAMSPEHALNWGYTGPILRSTGAK 239 Query: 388 -DLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE 446 D+R D+PY Y ++ + GD + R VR++E +S++M+ + +PD P+ + Sbjct: 240 IDIRKDNPYLAYADLDFEVPVGIKGDNYDRYYVRMREIDESISMVRQCMKKLPDGPVNID 299 Query: 447 GFSY---------------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 P EAP GE + + + + Sbjct: 300 DRRIMYPTKDKVYTKIEYLISHFKLVIDGIQVPAGEIYVSHEAPNGELGFYLISDGSGRP 359 Query: 480 FRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 ++ R+ ++A+ + +L G V+D GS++ DR Sbjct: 360 YKLHVRSPSFAHMGGMHTLLEGYQVADVIATFGSMNMIGGECDR 403 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 313 bits (803), Expect = 1e-83, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 20/375 (5%) Query: 168 SETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAE 227 + + N++ I +GP H ++ L +DGE IV+ Y+HRGMEK AE Sbjct: 6 PPGFRLERKSNTEEFFINMGPQHPSTHGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAE 65 Query: 228 TRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHL 287 + M Y + +SDR + +++ ++E + + VP R IR +L E+ R+ SHL Sbjct: 66 S-MSYLQYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHL 124 Query: 288 LNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT 347 + G +G T + F+ RE + E + GSR T GG R D+ + Sbjct: 125 VFYGCFGGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRV 184 Query: 348 LKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRF 391 + M + + L + +R+ GIG+L ++ A D+R Sbjct: 185 KAFLDHMEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRR 244 Query: 392 DHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL--LTEGFS 449 +PY+ Y + + F GD + R +R+ E +S+ +L ++ P E Sbjct: 245 ANPYSIYDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGPWRSKEKPV 304 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 P +E +G + + K +R R ++ + + M +G+ +SD Sbjct: 305 RLPVGRYYSEIETAKGLYATYVVAATTGEKPYRIHTRGPSFPHIAAINKMAQGHKISDLV 364 Query: 509 LIIGSLDPCYSCTDR 523 I+ +LDP DR Sbjct: 365 TIMATLDPVIPEIDR 379 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 174/391 (44%), Gaps = 44/391 (11%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 EG+ + +GP H +S F + + G+ IV D + YVHR MEKLAE R + Sbjct: 16 REGDESVYELFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAI-K 73 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 L +R+ I +V ++E L +E P RA +R++L E+ R+ SHL +G++ Sbjct: 74 AIPLLERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAG 133 Query: 295 HFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 + T FM F RE + +AE L G+R T+ ++ GGVRRD+ + + K R M Sbjct: 134 IMLNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYM 193 Query: 355 RADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADY 398 + + + + L P + R +G+G+L + A D R Y Y Sbjct: 194 ERRLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAY 253 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF---------- 448 ++ + T GD +R++VRV+E S++++ L MPD P+L+E + Sbjct: 254 KDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILSEKYLKLLPPKTRE 313 Query: 449 ----------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 P A+ E GE + + K +R R ++ N Sbjct: 314 RVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIFYHITGDGSAKPYRLRVVTPSFRNV 373 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + RY+ G+ D P I GSLD DR Sbjct: 374 ILFRYLAPGHRFMDFPAIYGSLDYFPPEADR 404 >UniRef50_C1AB36 NADH-quinone oxidoreductase chain D n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AB36_GEMAT Length = 412 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 150/399 (37%), Gaps = 44/399 (11%) Query: 168 SETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAE 227 + D V+ +GP H + +DGE+++ D Y+HRG EK E Sbjct: 15 NPVRAAFGPSRDDTVVVNIGPSHPATHGTVQIIAELDGEKVLRTDVHCGYLHRGFEKECE 74 Query: 228 TRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHL 287 +N + DR+ ++ AY + VE +GIE+ R +R++L E RL HL Sbjct: 75 DHTWHN-LIPYVDRLNYCSALINNFAYCDGVEQLMGIEITPRTKYLRTLLSEYSRLADHL 133 Query: 288 LNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQT 347 + S +G T F+ VR+ L G+R TY IGG+ D+ + Sbjct: 134 TCVAASLMELGAMTAFLYLVTVRDSMYEHLAALTGARVTYSYGRIGGLAADVPDGWFKRL 193 Query: 348 LKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRF 391 +++R+ + ++ R + +G ++ A RDLR Sbjct: 194 GEILRDYEQYAERVHGLVDRNRIFIDRLRNVGTINTADALHWGFTGPVLRSTGAKRDLRK 253 Query: 392 DHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF--- 448 D PY Y + + GD + R VR++E +S+ M+ +D +PD P+ + Sbjct: 254 DTPYLAYAELDFDVPVGIFGDNYDRYYVRMREMDESVYMIRQLMDMIPDGPINVDDRRCV 313 Query: 449 ------------------------SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 P A E GE + + ++ Sbjct: 314 FPEKQLVYSEIESLINHFKLVMEGPAVPAGDAYVAHEGANGELGFYIVSTGEGVPYKVHV 373 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R+ ++ + ML G ++D GS++ DR Sbjct: 374 RSPSFVHMGGAHRMLDGYQLADIVTSFGSINMIGGECDR 412 >UniRef50_C2BU22 NADH dehydrogenase (Quinone) n=4 Tax=cellular organisms RepID=C2BU22_9ACTO Length = 457 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 96/430 (22%), Positives = 164/430 (38%), Gaps = 65/430 (15%) Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 S + ++D + +GP+H ++ + ++GE + D Y Sbjct: 29 PEFSVHDGEWSAMSADLESAHNDRIAVNLGPVHPSTHGVLRVIVELEGETVKDCRLGTGY 88 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRS 275 +H G+EK E R YN+ R+ + F VA+ +VE ALG+ VP+RA IR Sbjct: 89 LHTGIEKSMEYRT-YNQGVAYCSRMDYVAPFFSEVAWCLAVEKALGVTDQVPRRASEIRV 147 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 +L+E+ R+ SHL+ +G + +G T FR RE+ + + E + G R GGV Sbjct: 148 LLMELNRIASHLVAVGTGANELGATTMLTTGFRGREEILRIFEHITGLRMNNTYMRPGGV 207 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD------------- 382 D+L + + + ++ D+ E+ ++++A P R + +G L Sbjct: 208 SNDLLDDTIDMIREKLPLVKRDIGEMQDLIMANPIFIGRMKNVGWLPLSTMMALSLTGPC 267 Query: 383 ---RQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP 439 + D+R PY Y + T D ++R VR +E + SL ++ LD + Sbjct: 268 LRAGGLPLDMRKLQPYCGYEAYTFDVPTRDHSDCYTRTEVRFEEMYQSLRIVYQVLDRLE 327 Query: 440 DT---PLLTEGFS-------------------------------------------YKPH 453 + P++ P Sbjct: 328 QSEGEPVMIADPKFAYPSKLTIGADGQGQDPEHVSHILGHSMEELIHHFKLVTEGFRIPP 387 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 VE +G + +R R +YAN M G +SD + IGS Sbjct: 388 GQVYAQVEHAKGIQGVHLVTDGGTHPYRAHFRDPSYANLQSASMMCEGGLISDLVVSIGS 447 Query: 514 LDPCYSCTDR 523 +DP + DR Sbjct: 448 IDPVFGGVDR 457 >UniRef50_B8IYV5 NAD-dependent dehydrogenase subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IYV5_DESDA Length = 565 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 130/515 (25%), Positives = 194/515 (37%), Gaps = 64/515 (12%) Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D ++ L+ +G + V A F S+TP +P + EREI + +G Sbjct: 55 DTPEQPRAVSLCCILAHDGTRRLMARCTPPVTA----FVSMTPELPQLHYFEREIYEQWG 110 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEP---------------TTDSETY 171 + PVG P + + D E ++ P + Y Sbjct: 111 VEPVGHPWLKSVRRIPDSAEAAARNAAESQTSSAAPAQESAEVVPSPALTASARPQTLPY 170 Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 PF +D + VGP+H EPGHFR GE ++ + L Y HRG+E + T+ Sbjct: 171 PFYRVEGADVHEVAVGPVHAGIIEPGHFRFQCYGENVLHLEIALGYQHRGLEAMI-TQGP 229 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 L + G AH+ A+ +E G + +RA +R I LE+ERL +H +LG Sbjct: 230 AGRRLHLLECAAGDSTVAHATAHCVLLERMTGQQPDERAQLLRRIGLELERLANHTGDLG 289 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 GF R+R + + L G+R GL GGV D+ + L V Sbjct: 290 AIAGDTGFLPTASWNGRIRGDFLNITASLCGNRFGRGLLRPGGVAYDLAPSECADMLARV 349 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPY 395 R D V+++L + R G+++ AR D RF P Sbjct: 350 RAAWHDARGSVDVMLDAVTVRNRLADTGMVEPATARELGLVGVAARACGLDVDARFHMPL 409 Query: 396 ADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS------ 449 +D GDV +R +VR +E DSL +LEF L + P + Sbjct: 410 SDLPCEGCAPRLEITGDVMARTLVRSRELDDSLRLLEFDLARLGALPHTKNAATAESTVS 469 Query: 450 ----------------------YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAA 487 P A+ VE RGE H + +L ++ Sbjct: 470 APATAAATNTSGTAAEAASFDALPPDTLAVALVEGWRGEVCHVGLTDSRGRLLVYKVVDP 529 Query: 488 TYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ NW L LRGN +SD PL S + Y D Sbjct: 530 SFHNWAGLAMALRGNQISDFPLCNKSFNLSYCGHD 564 >UniRef50_B3T914 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=2 Tax=environmental samples RepID=B3T914_9ARCH Length = 384 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 149/380 (39%), Gaps = 21/380 (5%) Query: 163 EPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM 222 + + + + + + VGP H S L VDG+ IV D YVHRG Sbjct: 7 PKSKEIFPGLQLEKVDDRIMTLNVGPQHPGS-GHMRIILKVDGDYIVHCDPDPGYVHRGE 65 Query: 223 EKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVER 282 EK+AE R + L +R Y VE LG+EVP+RA IR I E+ R Sbjct: 66 EKMAEYRNYITNIPHL-ERPVIHDSCNILYPYCLGVEELLGLEVPERAKYIRVIAAELNR 124 Query: 283 LHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE 342 L + F+G T FM RE + + + + G+R T+ + GGVR DI Sbjct: 125 CVYTQYWLAIYGIFLGHSTMFMWPMGDRELVIDLLDKMTGARVTHSYFVPGGVRNDIPPN 184 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA---------------- 386 L+ V + E +M P + RT+ GIL R+ A Sbjct: 185 FEDVCLRQVNYFEKRLKEYADMFYDNPILISRTKDTGILSREDAIKLGTTGSVLRASGVD 244 Query: 387 RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTE 446 D+R PY Y + GD ++R + + F+S ++ AL MP + + Sbjct: 245 FDIRKKEPYDVYEELDFQTNVLKEGDSYARSKIPWLDMFESCRIIRDALKKMPKSGSVRV 304 Query: 447 GFSYKPHA---FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 P VE+ RG + + +R + ++ N + ++L G Sbjct: 305 KLKPNPKGGDTEVYRRVESGRGSLGMHIISRGKPQPYRLKISVGSFRNLIAMPHLLTGEM 364 Query: 504 VSDAPLIIGSLDPCYSCTDR 523 + + P + SL+ DR Sbjct: 365 LGNMPAVYWSLNYWPVEADR 384 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 114/368 (30%), Positives = 189/368 (51%), Gaps = 21/368 (5%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 I +GP+H T EP RLF++ E I +A+ + +RG+E + E + +++ LS+++C Sbjct: 10 IAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEG-LPPEKISILSEKIC 68 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H E IEVP+RA IR+I+ E+ERLHSH+L G + +GF+T Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETMA 128 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADVSEL 361 + F +RE M + + G R Y +IGG+ R +I + + L+ + + ++ +L Sbjct: 129 FRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLKKL 188 Query: 362 VEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 +E + P + R + +G+LD++ A+ D+R Y N Sbjct: 189 LERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEFEE 248 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP--LLTEGFSYKPHAFALGFVEAP 463 F GDVFSR+ VR E F+S+ ++ L ++P+ + + K + EA Sbjct: 249 IVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLDKRIYNPNYELKEFKPIDVYNEAQ 308 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RG+ + L +N ++ + + R T N + +L G+ VSDA LII S DPC++CTDR Sbjct: 309 RGQVYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHHVSDAELIIASCDPCFTCTDR 368 Query: 524 VTLVDVRK 531 + +V K Sbjct: 369 MIVVKENK 376 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 113/380 (29%), Positives = 186/380 (48%), Gaps = 18/380 (4%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + + IP+GP+H EP +L +DGE+ VDA+ + YVHRG+EK+ E + ++ Sbjct: 1 MSENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKH-CHKGI 59 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 L++RVCGIC + H++ + +E+ IE+P +A +R + E+ER+HSHL+ + Sbjct: 60 HLAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLS 119 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 + +T M VRE M + E++ G+R G N+IGGVRRDI +E + K + Sbjct: 120 IEHETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFED 179 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP---------------YADYGNI 401 ++ ++E+ P + R++ IGIL R P ++ Y + Sbjct: 180 ELKNIIEVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGLPESDWRLRHSTYQEL 239 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVE 461 GD F+R+MVR +E +S+ ++ AL++ + + E Sbjct: 240 KFKPVWREEGDNFARMMVRHEEIIESVRLIREALEHYEECSGDIRVKAEIKGGKGEWRNE 299 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT-VSDAPLIIGSLDPCYSC 520 APRGE + + D + R R T N +YML+ V+DA S+DPC SC Sbjct: 300 APRGEVTYRMEITDGGIIKRIMIRTPTVMNLEAYKYMLKTCPTVADAVSAYTSIDPCVSC 359 Query: 521 TDRVTLVDVRKRQSKTVPYK 540 T+R V V+ + + K Sbjct: 360 TERCI-VAVKDGKEIPISIK 378 >UniRef50_C6X0Z4 NADH-ubiquinone oxidoreductase chain D n=1 Tax=Flavobacteriaceae bacterium 3519-10 RepID=C6X0Z4_FLAB3 Length = 420 Score = 308 bits (788), Expect = 5e-82, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 162/396 (40%), Gaps = 44/396 (11%) Query: 170 TYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETR 229 + ++ + + +GP H + L +DGE+I+ ++ + Y+HR EK++E R Sbjct: 25 QHDAKDQIDGQLYTLNLGPTHPATHGIFQNVLTMDGERILHSEQTIGYIHRAYEKISE-R 83 Query: 230 MGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN 289 + ++T L+DR+ +++ + +VE +G EVP+R +R I++E+ R+ H++ Sbjct: 84 RNFTQITTLTDRMNYCSAPINNIGWHLTVEKLIGCEVPKRVDYMRVIMMELARIADHMVC 143 Query: 290 LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 G+ G TG F+ REK M E + G+R T + IGG RD + Sbjct: 144 NGVIAMDAGAITGLTYLFQEREKIYEMYEQVCGARMTTNMGRIGGFERDFNDKFHELLQT 203 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH 393 ++ SE + RT +G + + A D+R Sbjct: 204 WLKRFPKIWSEFCALNERNRIFMDRTINVGPISAERALSYGFTGPNLRAAGVDYDVRVAS 263 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY--- 450 PY+ Y + + + GD + R MVR +E ++SL ++ A N+PD P + + Sbjct: 264 PYSSYNDFDFIIPVGSAGDTYDRFMVRQQEVWESLKIINQAYKNLPDGPFHADVPEFYLP 323 Query: 451 ------------------------KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 P VE GE + + + +R R Sbjct: 324 EKADVYNNMEALIYHFKIVMGETDVPIGEVYNCVEGGNGELGFYLVSDGGRTPYRLHFRR 383 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + M++G +SDA + + S++ D Sbjct: 384 PCFIYYQAYPEMIKGGMISDAVVTMCSMNVIAGELD 419 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 161/370 (43%), Gaps = 26/370 (7%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 + +GP H ++VDG+ IV A +HRG EKL E R+ N L Sbjct: 1 MKELKLYLGPNHPGMHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNN-LAL 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 R+C + + Y ++E GIEVP++AH IR I+LE+ R+ +HL++LG VG Sbjct: 60 IPRICVPEPDINEMVYAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGPVG 119 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 TG R+ + + E + G+R + + GGVR+D+ +E + + + + Sbjct: 120 LYTGPNWGLADRDLILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKSFLDYLENRL 179 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQI-----------------ARDLRFDHPYADYGNI 401 E +++L ++RT+ +L ++ A D+R PYA Y + Sbjct: 180 PEYEDLILKNSLFQRRTKDKLLLPAEVVWELGVTGIGMRSAVGEAYDIRKVDPYARYDQV 239 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-------YKPHA 454 + T D ++RV + ET+ S+ ++ L+ MP + S P Sbjct: 240 EFYVPTANYSDGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGSALRWRVPKG 299 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTVSDAPLIIGS 513 VE RGE ++ + K +R R A+Y + L G + DA L + + Sbjct: 300 QVYTHVECARGEYGYYMVSEGEDKPYRVAVRGASYPQGLLGVEKYLPGTRIEDAALWMDT 359 Query: 514 LDPCYSCTDR 523 + C DR Sbjct: 360 MGVCPPEIDR 369 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 181/395 (45%), Gaps = 19/395 (4%) Query: 156 MDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRL 215 M R R + E + +PVGP H EP +L V GE++VD + Sbjct: 1 MKRRRREIQSNVQVVDVETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEM 60 Query: 216 FYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRS 275 Y HRG+EK+ E M + + FL++RVCGIC AH++ + VE + R +R Sbjct: 61 GYCHRGIEKIMEG-MPWQKAAFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRV 119 Query: 276 ILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV 335 ++ E++R+ SHL+ + + +T F+ RE+ + E + G+R G N++GGV Sbjct: 120 LVQELDRIQSHLIANAAYFYSIEHETMFVWNMNTRERVLDCIEEITGNRILTGWNVVGGV 179 Query: 336 RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPY 395 R D+ ++Q L+ + +R DV + P ++ R++G+G++ + R R P Sbjct: 180 RMDVTEDQLNNVLETLDAIRDDVITYRRIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQ 239 Query: 396 A---------------DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPD 440 A Y + GD +R++VR E S+ ++E +D +P+ Sbjct: 240 ARASGVPESDMRLQEPVYPELGFKPVYRKEGDNLARILVRYDECLQSIELIERIVDELPE 299 Query: 441 TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 E VEAPRGE V+ L + R R + N VL + Sbjct: 300 GRHRREL--EVNAGHVDNRVEAPRGELVYDMELAPGGVVKRVTIRTPSVPNIRVLEAIAP 357 Query: 501 GNT-VSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 G+ ++DA SLDPC +C +R ++D R+ + Sbjct: 358 GSPSIADAVATYASLDPCVACNERFVVIDEREGKV 392 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 166/369 (44%), Gaps = 24/369 (6%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 S V+ +GP H ++ R+ +DGE++ A+ + Y+HRG EKL E R Y ++ Sbjct: 26 AESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEAR-DYRQII 84 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 L++R + F++ + +VE LG+EVP+RA R++L E+ R+ +HL+ LG Sbjct: 85 MLANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNHLMFLGSYPLE 144 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G T FR RE+ + E + G R Y N +GG++ D+ + V +R+ Sbjct: 145 LGGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAVASVRS 204 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGN 400 + ++L RT+ +G+L DLR D PY YG Sbjct: 205 RMDVYENLVLGNEIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVDFDLRRDEPYLAYGE 264 Query: 401 IP--KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL-----LTEGFSYKPH 453 + + T T GD +R +++T +SL + + LD M P Sbjct: 265 LRDTLKVVTRTEGDCLARFECLLEQTLNSLDLADACLDRMAHLAPGPINQRLPKVLKAPE 324 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 + E P G + ++ + + +R + R+A++ N L +L G V+D I+GS Sbjct: 325 GHTYAWTENPLGVNGYYLVSKGEKTPYRLKLRSASFNNIQALTELLPGTLVADMVAILGS 384 Query: 514 LDPCYSCTD 522 L D Sbjct: 385 LFFVVGDID 393 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 112/359 (31%), Positives = 183/359 (50%), Gaps = 19/359 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDG-EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + I +GP + +EP +F+L VD E + D + +VHRG+E L + + + L++ Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLI-LTE 60 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+C +C H +Y ++E IEV +RA +R I EV+R+ S++ NL + H V Sbjct: 61 RLCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDY 120 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 RE + E + G+R IGGV+ ++ K++ L + ++ V + Sbjct: 121 ELMRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDK 180 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKT 404 L E + +++ T+GIG+L +Q A D+R PYA Y + Sbjct: 181 LFERFCNSEKIKK-TKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDELEVR 239 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 + + GDV+SR+ VR + +++ +L+ A++N+P P+ E + P A EAPR Sbjct: 240 VDLESDGDVYSRMKVRWYDIKNAIKILKNAINNLPSGPIHLEKRPHIPAGEATVRTEAPR 299 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 GE +++ QK R R R TY N+ L M++GN SD LI+ S+DPC SCTDR Sbjct: 300 GELIYYVKTDGGQKPKRMRWRVPTYMNFQALEEMIKGNRASDVVLILNSIDPCVSCTDR 358 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 173/376 (46%), Gaps = 26/376 (6%) Query: 171 YPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRM 230 N I VGP+H ++ + VDG+ I + + ++HRG+EKL E RM Sbjct: 15 RTTQKSENMPVMRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENRM 74 Query: 231 GYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 Y + ++++ + Y ++VE AL EV + A R I++E +R+ SHL + Sbjct: 75 -YMQSPSYTEKLDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFI 133 Query: 291 GLSCHFVG-FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLK 349 G C+ +G T FM FR R+ + E + GSR Y +GG+ R + + + K Sbjct: 134 GALCNDIGQMFTMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAYK 193 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH 393 L + V +++ +RT+GIG + ++ A D+R ++ Sbjct: 194 LTEYIEYKVKGYKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKEY 253 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT------PLLTEG 447 PY Y + + T GD ++R +R +E F+S+ ++ ALD MP P+ G Sbjct: 254 PYYAYDRLKFKVPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDNDVVGLPIKLIG 313 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 KP + E PRGE + + + QK +R R R+ + + L ++ +G +D Sbjct: 314 PEAKPD-IVINHHELPRGEGIIYMVPDK-QKPYRIRLRSPVFISLSALEHICKGAKFADL 371 Query: 508 PLIIGSLDPCYSCTDR 523 I G+LD + DR Sbjct: 372 FSIAGTLDVVMAEVDR 387 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 169/367 (46%), Gaps = 21/367 (5%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 E V+ +GP H ++ RL +DGE++V A+ + Y+HRG EKL E R Y ++ Sbjct: 22 EQLGTDMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVR-DYRQI 80 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 L++R + FA+ + +VE LG+EVP+RA +R L E+ R+ +HL+ LG Sbjct: 81 IVLANRHDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPL 140 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +G T FR RE T E + G R Y N +GG++ ++ + + E+R Sbjct: 141 EIGAITPMFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAIGEVR 200 Query: 356 ADVSELVEMLLATPNMEQRTQGIGIL----------DRQIAR------DLRFDHPYADYG 399 + +L ++ RT G+G+L +AR DLR D PY Y Sbjct: 201 RSLPDLDNLIRRNEIFLARTVGVGVLSAAQAAAYGASGPVARASGLDLDLRRDEPYLAYD 260 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLLTEGFS--YKPHAF 455 + + T T GD SR V + + + SL + E LD + P+ T P Sbjct: 261 QLDVPVVTRTAGDCHSRFEVLLDQVYVSLDLAEQCLDRVDRLTGPINTRLPKVLKAPEGH 320 Query: 456 ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLD 515 + E P G + ++ + + +R + R A+YAN L +L G V D I+GS+ Sbjct: 321 TYAWTENPLGINGYYLVSRGEKTPWRLKLRTASYANVQALATLLPGCLVPDLVAILGSMF 380 Query: 516 PCYSCTD 522 D Sbjct: 381 FVVGDID 387 >UniRef50_A9A347 NADH dehydrogenase (Quinone) n=3 Tax=Thaumarchaeota RepID=A9A347_NITMS Length = 378 Score = 305 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 94/366 (25%), Positives = 143/366 (39%), Gaps = 22/366 (6%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 + + VGP H S + +DG+ IV D YVHRG EK+AE R V Sbjct: 15 DERIMTLNVGPQHPGS-GHMRIVVQIDGDYIVACDPDPGYVHRGEEKMAEYRNYITNVPH 73 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L +R Y E LGIEVP+RA +R I E+ R + L + F+ Sbjct: 74 L-ERPVIHDSCNVLYPYVLGAEEILGIEVPERAKYVRVICSELNRCIYTMYWLAIYGIFL 132 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G T FM RE + + E + G+R T+ + GGVR D+ L+ V Sbjct: 133 GHSTMFMWPAGDRELLIDLMEKVSGARVTHAHFIPGGVRNDLPANFEDVCLRQVNYFEKR 192 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 + E + P + RTQ G+L R+ A DLR PY Y + Sbjct: 193 IKEYAAVFYDNPILISRTQDTGVLSRENAIRYGTTGSVLRASGVDYDLRVKAPYDVYDEL 252 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFA----L 457 GD ++R V + +S ++ AL MP + + P Sbjct: 253 DVHTNVLKEGDSYARSKVPWLDMMESCNIIRQALQKMPKSGSVRTKLKPNPKTKGPATVY 312 Query: 458 GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPC 517 VE+ RG + + + +R + ++ N + +L G + + P + SL+ Sbjct: 313 KRVESGRGSLGCYIVSDGKTEPYRVKMSVPSFRNLLAMPNLLIGEKLGNMPSVYWSLNYW 372 Query: 518 YSCTDR 523 DR Sbjct: 373 PVEADR 378 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 161/365 (44%), Gaps = 20/365 (5%) Query: 177 GNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVT 236 + GP H + + +DG+ V A+ + Y HRG+EKL E R + Sbjct: 1 MTEGLVTLNWGPQHPVT-GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIP 59 Query: 237 FLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF 296 + +R S++YT +VE+ + E P RA +R+I+ E+ RL SHL NL L Sbjct: 60 MI-ERFNMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHLYNLALYTVA 118 Query: 297 VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRA 356 +G T FM RE + + E+L G R Y + GGV +D+ + Q K ++ R Sbjct: 119 LGMYTPFMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFRN 178 Query: 357 D-VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + + + + T ++ R + +GI+ ++ A +D+R PY Y Sbjct: 179 RLLKDYKKFIYDTTAVKSRGEDVGIMSKEEALKWGVTGPVLRASGVKKDMRKVEPYGAYN 238 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGF 459 + + T GD +R++VR +E SL +LE + ++P T+ P Sbjct: 239 EVDFDVITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFTKVRPAVPAGETFTR 298 Query: 460 VEAPRGEDVHWSMLGDN-QKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCY 518 VEA RGE + + +R + ++ N VL + G+ ++D I S+D Sbjct: 299 VEAARGEVGVYLFNKETRNMPYRTKFSNPSFKNGYVLPKLFVGSVIADCAAIYHSIDVWA 358 Query: 519 SCTDR 523 DR Sbjct: 359 LEMDR 363 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 300 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 112/382 (29%), Positives = 186/382 (48%), Gaps = 18/382 (4%) Query: 162 PEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRG 221 D T E I +G +H + EP RLFV+ E + DA+ + HRG Sbjct: 1 MVTKIDGATTCDKTERQVFETEINMGTVHPAALEPYRVRLFVEDEIVKDAEITVGLNHRG 60 Query: 222 MEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVE 281 +E++ E + + L+++VCGIC H E ALGIE+P+RA +R + E+E Sbjct: 61 IERIMEG-LPVEKANALTEKVCGICSNGHIYNSCRVGEGALGIEIPERAVYLRVLAEELE 119 Query: 282 RLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDI 339 RLHSH+L LG + +T M+ F +RE M + ++ G+R YG++++GGV R D+ Sbjct: 120 RLHSHMLYLGHGSEVLCHETFAMRIFYIRESVMDLLYMMGGNRVQYGISVLGGVRPRADL 179 Query: 340 LKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHP----- 394 +++ + L + + V++ E +A P + R G G L ++ A DL P Sbjct: 180 NLKEQQRVLDTMDYIDEKVADFAERFIADPMVMHRITGTGELSQKQALDLHVTGPSLRAT 239 Query: 395 -YA--------DYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT 445 Y +Y + T GGDV + +++R E F+S ++ + N+P P++T Sbjct: 240 GYEYDFRTEMFEYEPFEFDIITQDGGDVRANILMRATEIFESTKIIRQVIKNLPKGPIVT 299 Query: 446 EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVS 505 + ++E PRG H L ++ K+ R + +N ++ G+ + Sbjct: 300 RDWDLVDSPVYKSYIEVPRGVCYHSYGL-EDGKVRHSIIRTPSMSNIGAMQESCIGHPIQ 358 Query: 506 DAPLIIGSLDPCYSCTDRVTLV 527 DA L I S DPC++CTDR + Sbjct: 359 DAQLAIVSCDPCFTCTDRAIQI 380 >UniRef50_B3ES55 NADH-quinone oxidoreductase subunit D n=19 Tax=Bacteroidetes/Chlorobi group RepID=NUOD_AMOA5 Length = 403 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 92/384 (23%), Positives = 159/384 (41%), Gaps = 34/384 (8%) Query: 173 FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGY 232 + + +I +GP H + + +DGE +VD L Y+HR EK A T + Y Sbjct: 21 QPTDLKVEEVLINIGPQHPATHGILRLEVILDGEIVVDVVPHLGYLHRCFEKHAAT-LPY 79 Query: 233 NEVTFLSDRVCGICGFAHSVAYTNSVENALGIE--VPQRAHTIRSILLEVERLHSHLLNL 290 N+ DR+ + A+ VE+ LG+ +P+R IR ++ E+ RL SH + + Sbjct: 80 NQTIPFVDRLDYLAAMNSEHAFAMGVEHMLGLTGKLPRRVEYIRVLMAELNRLASHFMAI 139 Query: 291 GLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 G +G T F+ R RE + + E G+R Y IGG+ D+ + L+ Sbjct: 140 GTYGIDLGAFTSFLWLMRDREYILRLFEWASGARMLYNYIWIGGLYYDLPVGFEERCLEF 199 Query: 351 VREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHP 394 + ++ + E+ ++L+ +RT +G+L A DLR Sbjct: 200 ITYLKPKLEEINQLLIDNTLFIKRTANVGVLPLATAINHGVSGPILRASGLRLDLRRIDG 259 Query: 395 YADYGNIPKTLF-----TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT-------- 441 Y+ Y + + GD + R V+ +E +S+ + E L + Sbjct: 260 YSIYPELSFDIPIGEGLMGHVGDCWDRTWVKFQECKESIKITEQCLVRLTSDLKRTADFN 319 Query: 442 -PLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQ-KLFRWRCRAATYANWPVLRYML 499 + E PRGE + DN K R + R+++++N V+ + Sbjct: 320 PQKMVPKKVRTKAQDCYIRAENPRGELGFFFRASDNGDKPIRCKARSSSFSNLSVISSIA 379 Query: 500 RGNTVSDAPLIIGSLDPCYSCTDR 523 +G ++D IIGS+D DR Sbjct: 380 KGQVLADLIAIIGSIDIVLGEIDR 403 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 296 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 102/374 (27%), Positives = 181/374 (48%), Gaps = 22/374 (5%) Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 + I +G +H + EP R FV+ E I DA+ + HRG+E++ E + Sbjct: 4 KKAKKQEIIETEIQMGTVHPAALEPYRVRFFVEDEIIKDAEITIGVNHRGIERVMEG-LP 62 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 + L++++CGIC +H+ + E LG+EVP RA IR I+ E+ERLHSHLL LG Sbjct: 63 VEKANMLTEKICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHLLYLG 122 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV--RRDILKEQRLQTLK 349 C + +T M+ F +RE M + ++ G+R YG ++IGGV R ++ + + L Sbjct: 123 HGCETLAHETFSMRVFYIRETIMDLLAMIGGNRVQYGCSIIGGVRPRCELDDNRIQRILD 182 Query: 350 LVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDH 393 + + +V + + + R G G + ++ A RDLR D Sbjct: 183 GMDLVEKNVLDFANRFVKDSVVASRISGTGYIPQEQALKLAVSGPTLRATGVKRDLRTDM 242 Query: 394 PYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH 453 +Y N + T DV +++++RV E F+++ ++ A+ ++P+ + + Sbjct: 243 --YEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAIRDLPEGKITDRSWEMIDT 300 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGS 513 ++E PRG H + ++ ++ R + +N ++Y N ++D L I Sbjct: 301 DLIESYIEVPRGTLYHSYAI-EDGRVRHCIIRTPSMSNIGAMQYACIDNHITDGQLCIVQ 359 Query: 514 LDPCYSCTDRVTLV 527 DPC++C+DR V Sbjct: 360 CDPCFTCSDRAIEV 373 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 112/452 (24%), Positives = 195/452 (43%), Gaps = 31/452 (6%) Query: 93 VKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLR 152 + V S +P+++ VPAA W ER+I D++GL P+G P L+LP + P Sbjct: 54 IDVAVPRGSTSYPALSAVVPAASWYERKIHDLFGLEPLGHPRLDPLILP---LREAQP-- 108 Query: 153 KDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDAD 212 + R P T E IP GP+ E + + GE I Sbjct: 109 RPLPGQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVG 168 Query: 213 YRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHT 272 R+F HRG+E+ E + ++ L++RV GI AH++A+ ++VE+ G+ R + Sbjct: 169 IRVFAKHRGIERRFED-LDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRS 227 Query: 273 IRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 +R I E+ER+ +HL G +F +E+ + + GSR G+ + Sbjct: 228 VRVIFAELERIANHLDVALKLADAAGLAVAVSRFGYHKERILRLIGAACGSRFGRGVVVP 287 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----- 387 GG+ + L + ++ +V ++L+ TP+ R +G G LD +AR Sbjct: 288 GGIGCEP-AISPNALLTRLDDILREVFADADLLMQTPSFLDRLRGTGPLDPALARRHGAL 346 Query: 388 -----------DLRFDHPYADYGNIP-KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL 435 D R+ PY +Y ++P + GD +R+ +R E S ++ A+ Sbjct: 347 GPIGRASGFDDDDRWHRPYDEYSDLPQFPAVSSGSGDALARLEIRWSEIRSSAELIRQAV 406 Query: 436 DNMPDTPLLTEGFSYKPH------AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATY 489 ++ T + P +G+ EAP+GE V+ D ++ R R+A++ Sbjct: 407 AHIAALSAPTAEPADVPAAIDRISGRGIGWAEAPQGEVVYVVECDD-GRISRCAPRSASF 465 Query: 490 ANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 N + + G+ ++D P I S + Sbjct: 466 HNLVLFHDVFAGDILTDFPFIEASFGLSIAGV 497 >UniRef50_A6UVJ6 Hydrogenase, component E-formate hydrogenlyase subunit 5-like protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVJ6_META3 Length = 518 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 102/469 (21%), Positives = 182/469 (38%), Gaps = 38/469 (8%) Query: 80 ALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLV 139 S+ + V+ +V F S++ EREI + YG++P P + + Sbjct: 61 IYSVLRNDTELYVLSTMV---GTSFESLSQYNIKFQMFEREIAEQYGIVPKNHPWLKSVR 117 Query: 140 LPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHF 199 ++ P P YPF G + + VGP+H EPGHF Sbjct: 118 YHKNY--KGAPDVFGNNYTAPIPGN------YPFYEVGGEEIHQVAVGPVHAGIIEPGHF 169 Query: 200 RLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVE 259 R GE I+ + + Y HRG+EK + + + + G +S+ ++ ++E Sbjct: 170 RFNCIGETILSLEIQHGYQHRGIEKQILN-CKKEVLPLIIESIAGDTVIGNSICFSEAIE 228 Query: 260 NA--LGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMA 317 E + + R +LLE+ER+ +H+ +G VG+ + R+R + M Sbjct: 229 WLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVGYIPTASYYGRIRGDFLNMF 288 Query: 318 ELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQG 377 L+ G+R G + + + +K +++ +V ++ ++L P + R Sbjct: 289 VLICGNRFGRSSVRPFGAPFKLSDDHIKELIKRFEQLKKEVIDVGNLMLDNPEVLGRFDY 348 Query: 378 IGILDRQIARDLRFDHPYADYGNIPKTL-----------------FTFTGGDVFSRVMVR 420 GI+D + A+ + P I + G V SR Sbjct: 349 TGIVDTKTAKLIGLVGPAGRASGIKYDVRKSFSKAKNIYNRGIGLVARKDGAVSSRAKTY 408 Query: 421 VKETFDSLAMLEFALD----NMPDTPLLTEGFSY---KPHAFALGFVEAPRGEDVHWSML 473 ET DS+ L + D+ E KP++F + EA RGE H + Sbjct: 409 FYETLDSIEFCIELLKVADFQINDSADKLEKIEKTVLKPNSFIITMEEAWRGELSHCIIT 468 Query: 474 GDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +N + R++ + ++ NW L ++R + D PL S + Y D Sbjct: 469 DENGNIIRYKIKDPSFHNWTALELVVRNEGIYDFPLCNKSFNLSYCGFD 517 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 295 bits (755), Expect = 3e-78, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 172/376 (45%), Gaps = 29/376 (7%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + + +GP H + F+L +DGE+++D D ++HRG EK+ E R ++ Sbjct: 1 MSKAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDL 60 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 +S R+C + YT+++E GIE P++A +R I+ E RL SHLL + Sbjct: 61 V-MSARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAG 119 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 + RE+ + + + G R + GGVR DI + + +TLK+++ ++ Sbjct: 120 PIAARYATSWAIAAREEILKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIK 179 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG 399 + ++ + P E+R + +G L A DLR Y YG Sbjct: 180 PLIDDIRDGFFYHPIFEKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYG 239 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP-DTPLLTEGFSYKPHAFALG 458 I + + GD + R +VR++E + S+ ++ A++ MP + P + P +G Sbjct: 240 EIDFEIPSGEYGDSYDRALVRLREMYISMEIIRQAVEKMPTEGPYRYRLPATIPAGEGIG 299 Query: 459 FVEAPRGEDVHWSMLGDNQ--------KLFRWRCRAATYANW-PVLRYMLRGNT--VSDA 507 VE+ RGE + + +R + R T A+ VL++++ ++D Sbjct: 300 RVESARGEFLAHILQRPPGARRYSKPLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADL 359 Query: 508 PLIIGSLDPCYSCTDR 523 P++IGS DPC DR Sbjct: 360 PVLIGSFDPCPPDIDR 375 >UniRef50_A9FF67 NAD-dependent dehydrogenase subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FF67_SORC5 Length = 495 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 112/493 (22%), Positives = 192/493 (38%), Gaps = 46/493 (9%) Query: 47 DVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPS 106 ++++ L + L+G + AV ++ +++ V + V A+ + Sbjct: 31 ELLKQLRADM--RVVTLYGRRDVDRVAVTAV-----LQASDRSLHVSRTEVSAERG-YHE 82 Query: 107 VTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTT 166 +T A ERE+ + G G P + + R + + Sbjct: 83 MTTEHAALHCFERELHEQTGARIAGHPWLKPI--------------------RYEGQEQS 122 Query: 167 DSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLA 226 ++PF + + VGP+H EPG FR GEQ+ + L Y HRG+E+ Sbjct: 123 AMSSHPFYKIEGKEVHEVAVGPIHAGVIEPGSFRFMCLGEQVHHLEIHLGYQHRGVERRL 182 Query: 227 ETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSH 286 R +T L + + G AH+ A+ +++E+ G + R++ LE+ER+ H Sbjct: 183 LERDP-RSLTPLIETIAGDTSVAHAWAHCSALESLAGCRLDIEIELARAVALELERVAMH 241 Query: 287 LLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 L L VGF G + R+R ++ L GSR G GGVR + E Sbjct: 242 LSTLAGMAADVGFLQGATTYGRLRTTAINTMMRLCGSRFGKGALRPGGVRMRLPPEALPD 301 Query: 347 TLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLR 390 + ++AD+ + + L ++ R + G L AR D R Sbjct: 302 IRANLDLLQADLPIINDCFLMARTVQHRLRSTGTLTTAQARELGLVGLAARASGIELDAR 361 Query: 391 FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF-S 449 + Y +P GD ++R +R+ E SL+ + + + Sbjct: 362 HLVEHGAYSVVPIQPVVLPDGDCWARARIRIAEIEASLSWVSAVIALYANWERPRPSIGE 421 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 P A+ VE RGE VH G + ++ ++ + + NW L +RGN +SD P+ Sbjct: 422 LAPDQLAISLVEGFRGEVVHCVETGAHGEVVHYKVQDPSLRNWMGLALAVRGNEISDFPI 481 Query: 510 IIGSLDPCYSCTD 522 S D Y D Sbjct: 482 CNKSFDLSYCGND 494 >UniRef50_A8MBT0 NADH dehydrogenase (Quinone) n=1 Tax=Caldivirga maquilingensis IC-167 RepID=A8MBT0_CALMQ Length = 424 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 97/389 (24%), Positives = 156/389 (40%), Gaps = 45/389 (11%) Query: 178 NSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 SD ++ +GP H S L + G+ IV+A YVHR +EKLAETR+ + + Sbjct: 38 KSDEYLVLIGPAHPGS-GHMRIILRLKGDYIVEAVPDPGYVHRSVEKLAETRLFVHNIP- 95 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 L +R Y ++E ++VP RA +R I+ E+ R+ HL + G+ F+ Sbjct: 96 LVERPTIAESSIMDHGYVRAIEELGQLDVPPRAQYLRVIMDELSRIGDHLYDTGILAVFL 155 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 G TG+M F +RE + + G+R T + GVR D+ + + + Sbjct: 156 GHSTGYMWGFGLRELIVDALARMTGARITVSFVIPSGVRWDVHPDVLRYIYNMTFFIEKK 215 Query: 358 VSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNI 401 + EL + P R + +G+L + D R PYA Y + Sbjct: 216 IDELGTIFTKNPVTVSRMKDVGVLTKDQCIKLGAVGPFLRACGVEYDNRRARPYAVYDQL 275 Query: 402 PKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK---------- 451 + GD +SR +VRV+E SL ++ A+ N+P+ P++ + Sbjct: 276 EWEIPVADEGDAYSRFLVRVEEIRQSLNIIRQAVKNIPEGPVIGNKLMTRVPPKEREKVA 335 Query: 452 ----------------PHAFALGFVEAPRGEDVHWSMLGD-NQKLFRWRCRAATYANWPV 494 P A EA RG ++ + + +R R ++ N Sbjct: 336 KDIRNYLFRLLIGLTLPEGEATTLTEAARGTLLYSLVSDGKSNVPYRLRMITPSWYNLKP 395 Query: 495 LRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 LRG + D P I GS DR Sbjct: 396 FMESLRGYRLMDLPAIYGSWGYFPPEADR 424 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 191/475 (40%), Gaps = 38/475 (8%) Query: 63 LFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 L + G + + E + + ++ ++ + P+A+W ER++ Sbjct: 3 LIARYAKEREGTFEIVTVFESETQRET-------ISKENPVIRTLAKKHPSAIWFERKMS 55 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 D +G++ D+R L+ + +P+ +HP++K L T Y + Sbjct: 56 DDFGIVIEDAFDKRPLLHQERFPKAIHPMQKAFQKNTLDFAEFTP---YKYEAIQGDGVF 112 Query: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242 + VGP+H EPGHF GE ++ + R FY +RG+EK+ E + E + +R+ Sbjct: 113 QVSVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKT-LLEAKPVIERI 171 Query: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 G A+ A+ + V A G+E+P + LLE+ER+ HL +LG + GF Sbjct: 172 SGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLGFIPNDAGFGAA 231 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELV 362 ++ E + + + G R + G +L + ++ D++ Sbjct: 232 LAFASKLSEDARRQLQNVTGHRFGFDAI---GFENKVLD--ISSLYDYLDGLQKDIAFFE 286 Query: 363 EMLLATPNMEQRTQGIGILDRQI--ARDL-------------RFDHPYADYGNIPKTLFT 407 ++ P++ R GIL + D R P+ Y + T Sbjct: 287 TWIMDIPSLWDRFDTTGILQKADVLKYDTVGVVARASGFSLDRRSEPF--YLEHGFEIQT 344 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 GDV +R VR++E +S+ M++ L+ F E+ GE Sbjct: 345 EQSGDVAARFKVRLQEVKNSIVMMKHFLEE----DDTHIDIEKIKDGDYTAFAESSLGEL 400 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + + + R+ R ++ NW L M+ N ++D PLI S D Y+ D Sbjct: 401 FMNIEI-KDGVIERFFVRDPSFMNWQTLHLMMPNNIIADFPLINKSCDLSYAGND 454 >UniRef50_A4WMP9 NADH dehydrogenase (Ubiquinone) n=5 Tax=Thermoproteaceae RepID=A4WMP9_PYRAR Length = 407 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 100/406 (24%), Positives = 147/406 (36%), Gaps = 42/406 (10%) Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 EG I GP H +S F + VDG+ +V+ Y Sbjct: 4 PTHVRTEQYGLVLKEEQLEGKRRILDIFWGPQHPSS-GHTRFIVEVDGDIVVNVTPDPGY 62 Query: 218 VHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSIL 277 VHR MEKL ETR + L +R+ + AY +VE ++V RA +R I+ Sbjct: 63 VHRTMEKLGETRHWIQNIP-LFERLSLPDAINVTWAYAMAVERVAKLDVSPRAQYLRVIM 121 Query: 278 LEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 E+ R+ +HL +LGL +G TGFM F +RE + + ++ GSR T L GGVR Sbjct: 122 AELSRISTHLYDLGLHAIMIGSSTGFMWGFGLRELLVQLWAMVSGSRTTPTWVLPGGVRT 181 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------- 386 QT + + + E V +++ P R + +G L ++ A Sbjct: 182 APPDAFYEQTKGFLDYLEKKIDEFVRLVVKNPVGYYRLKDVGYLSKEDAARLMATGPGAR 241 Query: 387 -----RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDT 441 D R + Y Y + GD +R MVR+ E S ++ ALD +P Sbjct: 242 GSGIDWDARRVYKYGIYDEFEWDVCVEDAGDSLARTMVRICEIQQSAKIIRQALDRVPKD 301 Query: 442 PLLT--EGFSYKPHAFALGFVE----------------------APRGEDVHWSMLGDNQ 477 L P E RG + Sbjct: 302 GPLVGEAVLHRIPPKQREKANEIIRLGALYTTMLPQGEGVGVTEGGRGRYFFHVFGDGTE 361 Query: 478 KLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 K +R R ++ N + G + D P I GS DR Sbjct: 362 KPYRVRISTPSWQNLRAMIRAFIGARLMDLPAIYGSFGYFPPEQDR 407 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 94/377 (24%), Positives = 165/377 (43%), Gaps = 39/377 (10%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + VGP H S + +DG+ I + +VHRG+EKLAE R Y + L ++ Sbjct: 33 VVVGPQHPGS-GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENR-PYWTLIPLVEKAS 90 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + ++ T ++E ALG+E P RA +R+ + E+ R+ +HL +L L F+G T F Sbjct: 91 IMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLGIFLGHSTAF 150 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M F + + + + G+R T + GGVRRD+ +E KL+R+ + + Sbjct: 151 MWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKTEEKLRDFKT 210 Query: 364 MLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFT 407 + L P + R +G+G++D + A D+R PY Y + + T Sbjct: 211 VFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAYPELDFEVVT 270 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLL-----TEGFSYKPHAFA-----L 457 GD +RV+VR +E + S+ ++ AL N+P+ ++ + Y+ Sbjct: 271 EKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRREGMGGVLGVY 330 Query: 458 GFVEAPRGED-----------VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSD 506 ++ GE Q+++R R ++ N + +RG ++D Sbjct: 331 TYMYPEPGEYAAVAEAARGATYIHLWTTGTQRVYRMRYVTPSWRNLKAMAEAMRGERLAD 390 Query: 507 APLIIGSLDPCYSCTDR 523 P + S DR Sbjct: 391 MPAVYMSFGYFPPEADR 407 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 284 bits (727), Expect = 6e-75, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 171/359 (47%), Gaps = 24/359 (6%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 IP+GP+H EP + GE+++ + L Y+ +G+E++ R + EV FL++RVC Sbjct: 9 IPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGR-PWQEVMFLAERVC 67 Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 GIC H++ + ++E I VP RA +R ++ E++R+ SH+L C+ + +T Sbjct: 68 GICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTIEHETLA 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 M +RE + E + GSR + GGVR D+L E L + ++ ++ V Sbjct: 128 MYLLNIRETVLDNLERITGSRINTAYMIPGGVRFDLLPEDAAALLADLAKVEEEMKRYVR 187 Query: 364 MLLATPNMEQRTQGIGILDRQIA-----------------RDLRFDHPYADYGNIPKTLF 406 + P + R++GIG + R+ A DLR HP Y + T Sbjct: 188 IFETGPLIALRSKGIGYMSREEAIRAHTVGPTARASGVEDSDLRLRHPT--YRELGFTQI 245 Query: 407 TFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGE 466 T T GD F+RVMVR +E F S+ ++ ++ +P+ P+ G A G EAPRGE Sbjct: 246 TRTEGDNFARVMVRFQEVFQSIDLIRKCVETLPEGPIRGGGLCKAGEASYAG--EAPRGE 303 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR--GNTVSDAPLIIGSLDPCYSCTDR 523 + + ++ R + N + + +++D S DPC +C +R Sbjct: 304 LTYTIKTDEYGRVVDIAIRTPSIMNIEACAHSMIVDAASIADVTSTFISSDPCIACNER 362 >UniRef50_P15689 NADH-ubiquinone oxidoreductase 49 kDa subunit n=10 Tax=cellular organisms RepID=NDUS2_PARTE Length = 400 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 85/401 (21%), Positives = 148/401 (36%), Gaps = 57/401 (14%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 A + GP H + L ++GE + D + +HRG EKL ET+ Y + Sbjct: 1 MKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETK-PYLQSMPY 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIE-VPQRAHTIRSILLEVERLHSHLLNLGLSCHFV 297 DR+ + AY ++E L +R++ E+ R+ +H+L + + Sbjct: 60 FDRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDI 119 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD-ILKEQRLQTLKLVREMRA 356 G + F REK M E + G R V + + + L+ Sbjct: 120 GSMSSIFWAFEEREKIMEFYERVCGRRMHAAFYRPNEVNLNFLSVKLLTDILEFNNNCLT 179 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFD--HPYADY 398 +SE+ +L +QR IG + + RDLR D YA+Y Sbjct: 180 TLSEMHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANY 239 Query: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFAL----------------------- 435 + +T GD + R ++R+ E +S+ ++ A+ Sbjct: 240 YYLNFRSYTGQAGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALNKKK 299 Query: 436 -------DNMPDTPLLTEGFSYKPHAF------ALGFVEAPRGEDVHWSMLGDNQKLFRW 482 + L F Y F VE+P+GE + + K +R Sbjct: 300 FISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEFGVTLVSDGSNKPYRC 359 Query: 483 RCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + R+ Y + VL M +G+ ++D +IG++D + DR Sbjct: 360 KVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 155/359 (43%), Gaps = 23/359 (6%) Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP H L + G++IVDA + Y+HRG EKL E R + + + RVC Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRT-FIQCFPIVCRVCVPE 92 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 + Y +VE GIE P+RA IR+++LE+ R++S+L+ LG G Sbjct: 93 PDFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWT 152 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 +R+ + E L G+R + L GGVR + + + + +RE+ + + ++ ++L Sbjct: 153 TYIRDLMLDRFEELTGARIYHMFILPGGVRDGLPEGFEQRMEETLRELESTMKDVRDVLF 212 Query: 367 ATPNMEQRTQGIGILDRQ----------------IARDLRFDHPYADYGNIPKTLFTFTG 410 ++R+ G+G++D +A+D+R D PY Y + Sbjct: 213 HNAVFKKRSVGVGVIDPAWLEPYGVTGPNARAAGVAKDVRIDQPYLVYPELSYEAIVGKD 272 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS-----YKPHAFALGFVEAPRG 465 D+++R VR ++ S+ ++ L MP + P E RG Sbjct: 273 SDIYTRADVRYRDLLQSVDLIRQILARMPHEGPVMAKLPNVLHWKIPQGETYIRGECSRG 332 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYAN-WPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 E ++ + + R R +Y + +L +M+ +SD ++ SL +R Sbjct: 333 EYGYYVVTDGSGYPRRINVRGPSYTHAVALLEHMIINQNISDVAGLMVSLHTYPPEVER 391 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 273 bits (697), Expect = 2e-71, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 148/393 (37%), Gaps = 64/393 (16%) Query: 136 RRLVLPDDWPED--MHPLRKDAMDYRLRPEPTTDSETYPFINEGNS---DARVIPVGPLH 190 +R +P+ RKD + + T + PF+++ + V+ GP H Sbjct: 36 KRWGHNKWFPDRRYFEEYRKDHPIPQPLIDRDTVEKYNPFLDDEPNTEIQNVVLNFGPQH 95 Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 + L + GE++ D + +HRG EKL E + Y + DR+ + + Sbjct: 96 PAAHGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKT-YTQALPYFDRLDYVSMMCN 154 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVR 310 Y+ +VE L IEVP RA IR++ E+ R+ +HL+ +G VG T F FF R Sbjct: 155 EQCYSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIGTHILDVGALTPFFWFFEER 214 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPN 370 EK M E + G+R GGV +D+ + + + + + ++ ++L Sbjct: 215 EKLMEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDIHQFLTKFGSILDDVDDVLTNNRI 274 Query: 371 MEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAM 430 RTQ IG++ + A + + P Sbjct: 275 WVDRTQNIGVISAEDALNYGYTVP------------------------------------ 298 Query: 431 LEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYA 490 P T P + + + K +R + +A +A Sbjct: 299 -----------PGATYTAIEAPKGE-----------FGVYLVSDGSSKPYRCKIKAPGFA 336 Query: 491 NWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + L + +G ++D IIG+LD + DR Sbjct: 337 HLAALDKIGKGLFLADIVAIIGTLDIVFGEVDR 369 >UniRef50_D1LDT9 NADH dehydrogenase subunit 7 (Fragment) n=2 Tax=Euplotidae RepID=D1LDT9_EUPCR Length = 462 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 86/418 (20%), Positives = 148/418 (35%), Gaps = 60/418 (14%) Query: 165 TTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEK 224 T + + + ++ GP H S F L ++GE I AD + ++HRG EK Sbjct: 45 WTHNNSSKLNKLEQTQTFMMNFGPQHPASHGVLRFVLQLEGEYIRHADANIGFLHRGTEK 104 Query: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEV-PQRAHTIRSILLEVERL 283 L E R Y + DR+ + + AY ++EN LG +R++ E+ RL Sbjct: 105 LIEQRT-YLKSLPYFDRLDYVSMMSQEHAYCLAIENLLGSSTFTSFFVQVRALFDELTRL 163 Query: 284 HSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR-DILKE 342 +H L + VG + F RE+ M E + G+R + + + Sbjct: 164 MNHFLGISTHSLDVGNMSPAFWAFEERERLMEFYERVSGARMHAAFYRPNDLDWTGLNYQ 223 Query: 343 QRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI----------------A 386 + L + ++E+ +L R IG++D Sbjct: 224 FFIDLLFFLNNTYKSITEMFVILATNNIWRSRLVRIGVVDNAQVPLFAASGVVSRSAGFK 283 Query: 387 RDLR--FDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNM------ 438 +DLR Y+ Y + F GD + R ++R++E +S+ ++ + N+ Sbjct: 284 KDLRILKTSTYSYYWFLKLRSFLGKMGDCYDRFIIRIREMLESVFIIYQIISNLLVVFES 343 Query: 439 ---------------------------PDTPLLTEGFS------YKPHAFALGFVEAPRG 465 L F P VEAP+G Sbjct: 344 TTALPFWYNTESYVSATFTKSQFNKKSTSMEALITHFKHYSEGIKVPAGLVYQSVEAPKG 403 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 E + + K FR + R Y + + +RG+ +D I+GS D + R Sbjct: 404 EFGVSLISDGSSKPFRCKIRTPAYHHLQFMSSQIRGHFFADMITILGSQDIVFGEVIR 461 >UniRef50_Q0BPG8 Formate hydrogenlyase subunit 5 n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BPG8_GRABC Length = 517 Score = 265 bits (678), Expect = 3e-69, Method: Composition-based stats. Identities = 101/456 (22%), Positives = 174/456 (38%), Gaps = 29/456 (6%) Query: 92 VVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPL 151 ++ + FP+++P PAA W ER IRD++G D R + WP Sbjct: 65 ILPVATPIEGGRFPALSPFRPAAAWQERAIRDLWGYEAEHGVDSRPWLDHGRWPISAPLS 124 Query: 152 RKDAMDYRLRPEPTTDSETYP----FINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQ 207 + + + + + +GP+H EP RL + G Sbjct: 125 PRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHERSIGPVHPLMREPAQLRLHLHGTL 184 Query: 208 IVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVP 267 I A++RL Y HRG++ L + + ++ R+ G AH +A+ + E AL +E P Sbjct: 185 IRQAEWRLGYTHRGIQWLMRGK-PLRDAIRIAARITGDAALAHGLAFARAAEAALRLEPP 243 Query: 268 QRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTY 327 RA +R ++ E+ER HL L + G DT + RE+ + + G+R Sbjct: 244 PRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAKLSAWRERLLRAIQEAFGNRMMI 303 Query: 328 GLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML-----LATPNMEQRTQGIGILD 382 L + GGV D+L +++ + + EL+E L+ + +G +L Sbjct: 304 DLLIPGGVLTDLLDGT--ALETVLQALARTMPELIEGYETAASLSGHGLCACLRGCAVLS 361 Query: 383 RQIARDLRFDHPYADYGNIPKTLFT--------------FTGGDVFSRVMVRVKETFDSL 428 A L P P L T GD +R+ VR+ E +SL Sbjct: 362 GSDAVSLAVPGPAGRASGRPHDLRTTWQQAPHGTVHRLVLENGDADARMRVRLAEIQESL 421 Query: 429 AMLEFALDNMPDTPLLTEGFSYKPH--AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRA 486 + L+++P P+ + G VE+ RG HW + + + Sbjct: 422 RLALLFLESLPVGPIANPMPIGTGNASGEGYGGVESARGACWHWLRI-EGGMVVSAHAAD 480 Query: 487 ATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 ++ P + L G + + + S + D Sbjct: 481 PSWRLIPAIEAALPGTDIDRLGVALASFALSPAGAD 516 >UniRef50_UPI00019012E4 NADH dehydrogenase subunit D n=1 Tax=Mycobacterium tuberculosis T92 RepID=UPI00019012E4 Length = 424 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 19/306 (6%) Query: 164 PTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGME 223 + + V+ +GP H ++ L ++GE +V+A + Y+H G+E Sbjct: 21 QDWQQVVDAARSADPGERIVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIE 80 Query: 224 KLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGI--EVPQRAHTIRSILLEVE 281 K E R VTF++ R+ + F + AY VE LGI E+P+R + IR +++E+ Sbjct: 81 KNLEYRYWTQGVTFVT-RMDYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELN 139 Query: 282 RLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILK 341 R+ SHL+ L +G T FR RE +T+ E + G R GGV +D+ Sbjct: 140 RISSHLVALATGGMELGAMTPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPP 199 Query: 342 EQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD----------------RQI 385 + + ++++R + E+ E+L + RTQG+G LD + Sbjct: 200 NAATEIAEALKQLRQPLREMGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGL 259 Query: 386 ARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLT 445 DLR PY Y + + T D + R M+RVKE ++S+ ++E LD + P + Sbjct: 260 PHDLRKSEPYCGYQHYEFDVITDDSCDAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMI 319 Query: 446 EGFSYK 451 Sbjct: 320 SDRKLA 325 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 155/399 (38%), Gaps = 15/399 (3%) Query: 136 RRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDE 195 R + D+ K + N + GP H + Sbjct: 53 RLIPTDPDFAPGGP---KHQPIKPPGSYAEPSALESEVGNGRKIRHYTVNFGPQHPAAHG 109 Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 L ++GE+IV AD + +HRG EKL E + Y + DR+ + + ++ Sbjct: 110 VLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKT-YMQALPYFDRLDYVSMMTNEQCFS 168 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMT 315 +VE L IE+P+RA IR++ E+ R+ +HL+++ VG T F+ F REK M Sbjct: 169 LAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSVLSHAMDVGALTPFLWGFEEREKLME 228 Query: 316 MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA------TP 369 E + G+R GGV +DI + ++L P Sbjct: 229 FYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATHSATASTKLKNCSPKIVSGKLEP 288 Query: 370 NMEQRT--QGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDS 427 +R Q + I + + + L ++ VRV++ S Sbjct: 289 RNRRRFLPQRLSITALAESCSVAPLFHGMSANPNLRRLRPGRIRRAYAAGPVRVEDYKIS 348 Query: 428 ---LAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 A ++ ++ + LL P +EAP+GE + + +++ +R + Sbjct: 349 PPPRAAMKENMEALIHHFLLFTKGYAVPPGETYSAIEAPKGEMGVFLVSDGSERPYRCKI 408 Query: 485 RAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 RA +A+ + RG+ ++DA IIG++D + DR Sbjct: 409 RAPGFAHLSCFDQISRGHLLADAVAIIGTMDLVFGEVDR 447 >UniRef50_C6WGH3 NADH dehydrogenase (Quinone) n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WGH3_ACTMD Length = 358 Score = 258 bits (658), Expect = 6e-67, Method: Composition-based stats. Identities = 95/362 (26%), Positives = 146/362 (40%), Gaps = 39/362 (10%) Query: 181 ARVIPVGPLHITSDEPGHFRLFV-DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 RV+ +GPLH ++ RL V D E I A+ + ++HRG EKL E R Y +V L+ Sbjct: 17 DRVVDLGPLHPSAHGAYRLRLTVRDDEVITSAEPLVGHLHRGAEKLFEVR-DYRQVLTLA 75 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 +R + F + +A +VE G++VP RA +R++L E+ R+ +HL+ L V Sbjct: 76 NRHDWLAAFCNELAVALAVERMTGMDVPPRAQWLRALLCELNRVMAHLVFLAPLTDPVA- 134 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 R RE + E G R + N IGG+R D+ + + + Sbjct: 135 ------AARGREAVQAVLEEASGGRIHFMANRIGGLREDVPAGWAERVAGALDAVE---- 184 Query: 360 ELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPK 403 P + G+G+L R A DLR D P Y + Sbjct: 185 --------VPEVPTGLAGLGVLSRADALARGVTGPIGRASGVDLDLRRDDPLPAYRELDV 236 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--YKPHAFALGFVE 461 GGD +RV V + ++A+ L +P P+ P VE Sbjct: 237 RPSVRDGGDAHARVACMVDDLAQAVALARECLRRLPGGPVNLRLPKAVKAPEGSVYTRVE 296 Query: 462 APRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCT 521 AP G + +R + R ++ N L +L G V+ PL++GS Sbjct: 297 APLGVSGVHLASRGEKTPWRLKLRTPSFNNVQALSALLPGTPVAQLPLVLGSFAVVVGDI 356 Query: 522 DR 523 DR Sbjct: 357 DR 358 >UniRef50_A5FW46 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FW46_ACICJ Length = 476 Score = 255 bits (652), Expect = 3e-66, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 193/473 (40%), Gaps = 47/473 (9%) Query: 69 RTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLI 128 +G + Y S G + V A PS+ P W ERE D G+ Sbjct: 33 PEADGRQTLRYVSSRPGIAGFEVW---SVPA-GGTVPSIATIWPLLGWYERETADHRGIA 88 Query: 129 PVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGP 188 G P+ L+ PLR D +++ +V+P GP Sbjct: 89 FSGQPEPFSLI---------APLRAD-----------EEADLRRLPGLSGDAVQVLPFGP 128 Query: 189 LHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGF 248 + E F F GE I+ LF HRGME + L++RV G+ Sbjct: 129 VRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTP-ETGLVLAERVSGVGSV 187 Query: 249 AHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFR 308 AH++AY ++E A + VP RA R I+ E+ERL++HL LG + Sbjct: 188 AHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLGHLADTTTLKVAHAEGAL 247 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 + E+ + + GSR G+ GG+RR++ + + +RA + + L A+ Sbjct: 248 LAERVKQIGARVTGSRFLRGVIAPGGLRREL---RVEGLAGALDALRAPIRRYIARLDAS 304 Query: 369 PNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYG--NIPKTLFTFTG 410 + R G+L R++A RDLR DH YA Y ++ + T T Sbjct: 305 ESHFDRLATTGVLPREVAFDQGATGPVARASGLDRDLRRDHAYAAYDDPDLALAVATGTD 364 Query: 411 GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHW 470 GD +R VR+ E ++L M+ A+ P + A+G+ E+PRG ++ Sbjct: 365 GDAHARARVRIAEIENALLMIVRAIALTPGGAIRVACAPAAGA-EAMGWAESPRGTLIYA 423 Query: 471 SMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 +G + +L R + ++ +++NW V Y + G + D + S + R Sbjct: 424 VHVGPDGRLARVKIKSPSFSNWRVFPYTVHGTNMMDYAINEASFGLTIAGCAR 476 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 159/358 (44%), Gaps = 20/358 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRG-MEKLAETRMGYNEVTFLSD 240 + +GP H P F L + +++VD +Y+ + RG E+L R+ + L Sbjct: 3 YSLALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERL--PRLPLPDALHLVA 60 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 R+CG C FAHS+A+ ++E +V RA +R + E+ER +HL +G + Sbjct: 61 RICGECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHLYTARAVLDAIGME 120 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 ++S M L+ G R + GG+ RD+ +R + L ++ M AD+ Sbjct: 121 QRGAILDHFCQQSRDMLALVTGGRIPPPVCAPGGLLRDLTPVERQEVLAMLPGMSADLYR 180 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 ++ L+ + RT +G+L R A RD+R D PYA Y + Sbjct: 181 FIDRLIDQRFLLMRTVEVGVLPRAAAEQFGVRGPLARASGIRRDVRVDQPYAAYSMLDVQ 240 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 GGDV++R+++ + E ++ + ++E AL +P+ + E P A VE PR Sbjct: 241 PIIQEGGDVYARLLLLLLEAYEGVKLVESALQRLPEEDPIVELPHELPRGQASSVVEGPR 300 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G + +L R + + + R +L + D I+ SL C +C + Sbjct: 301 GAIRYTLESDGV-RLTRVQIDTPRQCDRLLARTLLSRAQLDDVMAILASLAVCVACAE 357 >UniRef50_B0SCU7 Metal (Ni/Fe) hydrogenase, large subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SCU7_LEPBA Length = 475 Score = 248 bits (633), Expect = 5e-64, Method: Composition-based stats. Identities = 102/479 (21%), Positives = 171/479 (35%), Gaps = 50/479 (10%) Query: 77 VYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR--DMYGLIPVGLPD 134 +YY + + S P R DM P+ Sbjct: 13 IYYQFHFDNQKLVMEEQITKKSNIDFLLDSNYPIWLI-----RHSFGQDM-------GPE 60 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSD 194 + DD+ D R + + D + + VGP+H Sbjct: 61 DYSEIKEDDFLTD---QRGKNLSLHQKTGIIRDLFYHGLKVPFSDGEYSHAVGPIHAGII 117 Query: 195 EPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAY 254 EPGHFR VDGE I RL + RG+ + N+V S+ + G +++A+ Sbjct: 118 EPGHFRFIVDGEVIRHLTIRLGFQKRGIRDHLLHK-AMNQVMPYSEMISGDTSVGYALAF 176 Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 + E+ I V + RSILLE+ER+ H+ +LG +G+ + R ++ Sbjct: 177 SKIYEDLYEIPVSKEIRLFRSILLELERIAVHIGDLGGISEDIGYYPLYGVCVTERGAAL 236 Query: 315 TMAELLIGSRKTYGLNLIGGVRRD---ILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 + E G R + G + + K+ + +L + + L+ + Sbjct: 237 GLMEAWTGHRFGKSVVRPGRLYLNNRLNAKQAKESFKQLKNAYIKKIRPQILRALSISTL 296 Query: 372 EQRTQGIGILDR----------------QIARDLRF-DHPYADYGNIP-KTLFTFTGGDV 413 ++R QG G + + DLR + Y ++ +P K GDV Sbjct: 297 KERMQGCGFISEMDVQNFGFVGMVARMAGVNEDLRIENFDYPNWNPLPLKEEHHHYNGDV 356 Query: 414 FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKP----------HAFALGFVEAP 463 ++R+ +R E S+ +E ++ + + LL E P F VEA Sbjct: 357 WARMYIRYSEIEQSMDWIEKTMEEI-NWDLLWEPKVKVPNQEILTKRTKPGFYYSAVEAW 415 Query: 464 RGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 RG + +N + R + NW L +RG V+D PL S + Y D Sbjct: 416 RGPLLVALQFDENGLVNNSYIRDPSVLNWHALELAVRGEQVADFPLNNKSFNLSYVGFD 474 >UniRef50_Q5DUX5 NADH-ubiquinone oxidoreductase 49 kDa subunit n=3 Tax=Nyctotherus ovalis RepID=NDUS2_NYCOV Length = 412 Score = 244 bits (624), Expect = 5e-63, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 139/385 (36%), Gaps = 46/385 (11%) Query: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243 + GP H S + + GE + D + ++HRG E+L E Y DR+ Sbjct: 29 LNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEH-SYMNAAVFMDRLD 87 Query: 244 GICGFAHSVAYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302 + AY +VE AL + R +R+I E+ R+ +HLL++ +G Sbjct: 88 YTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDIGTMAM 147 Query: 303 FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRD-ILKEQRLQTLKLVREMRADVSEL 361 F RE+ M + E + G+R L + E + L R +E+ Sbjct: 148 LFWAFEDRERIMELYEYISGARMHTALYYPNQTLDHILTNELLAKILIFSRNSEKTYTEI 207 Query: 362 VEMLLATPNMEQRTQGIGILDRQIARDLRFDHP------------------YADYGNIPK 403 L R GIG++ +I+ P Y Y ++ Sbjct: 208 YIALYNNRVWRLRLCGIGVVSTEISTSTTISGPVARSTGLQLDMRSGENYQYGYYASLTL 267 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP---------DTPLLTEGFSYKPH- 453 +F GD F R ++R++E F+S ++ +L + Sbjct: 268 RIFLGISGDSFDRFIIRLRELFESTRLIYNSLIELSAYINISVYNMCSYSNNPHLKIESL 327 Query: 454 --------AFAL-------GFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYM 498 L GFVE+ +G + + +R R+ Y + +L + Sbjct: 328 IELFRYSLGEYLLNISLVSGFVESGKGIFGIMLAANNTNRPYRLYIRSPAYMHLQLLPKL 387 Query: 499 LRGNTVSDAPLIIGSLDPCYSCTDR 523 G+ ++D ++GS+D + DR Sbjct: 388 GAGHHIADLATLLGSIDVVFGEVDR 412 >UniRef50_C7JEU8 NADH-ubiquinone oxidoreductase 49kDa subunit n=8 Tax=Acetobacter pasteurianus RepID=C7JEU8_ACEP3 Length = 498 Score = 242 bits (617), Expect = 3e-62, Method: Composition-based stats. Identities = 105/500 (21%), Positives = 173/500 (34%), Gaps = 36/500 (7%) Query: 38 ITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALV 97 ++ D+V L + L+ V+ +G + A + Sbjct: 19 FRLQEMAWRDLVDALKHDDLP-FVGLWC-------DGTDVHALFLPDGQP-----LAATL 65 Query: 98 DADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMD 157 + +P+++P + ER I D+YG + D R L+ D W Sbjct: 66 ALEDGRYPALSPARDISCLYERRIYDLYGAEGMWATDVRPLLDHDVWSSSTPLAEHPGAG 125 Query: 158 YRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFY 217 + P + GP + P H L + +I A+ Y Sbjct: 126 GGQKGLI----HFQPAEHMHQEGDMADGWGPATGGMEPPLHVALAMQEGRIRAAETVTGY 181 Query: 218 VHRGMEKLAETRMG-YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI 276 HRGME R + LS RV AH VA+ +VE+A +V +R Sbjct: 182 AHRGME--LRWRNSRVEDACKLSARVASGQSVAHQVAFCLAVEDACKEQVGPEIRLLRVA 239 Query: 277 LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVR 336 LLE+ER+ HL L G +REK + A + GSR + + GG+ Sbjct: 240 LLELERICHHLFLLADMARLAGARLVASGCMGLREKLIQEAAPITGSRLLMDVCVPGGLS 299 Query: 337 RDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFDHPYA 396 + +L D L+ + P + + GIG + + + D P A Sbjct: 300 LRHATQMGDMCGRLCEVAERDYPALLALWQEYPGLSMQLAGIGKVTADLLERVGLDGPTA 359 Query: 397 D--------------YGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 Y I + G R M+ ++E +SL ML+ + T Sbjct: 360 RAAGWDCDGRRMMPGYEGIWRFTSGRQDGTAEDRAMLLLEEVGESLRMLDEVASRIGLTA 419 Query: 443 LLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 + S + + G VE P G ++W L + ++ + R + A +L G+ Sbjct: 420 GGSVQLSMQ-DSEGTGMVEGPWGGILYWVRLKE-GRVEQVFARNPSSAALLTFEAILPGH 477 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 D L+ SLD + D Sbjct: 478 QPDDVALLARSLDINAAALD 497 >UniRef50_A9B5Q0 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B5Q0_HERA2 Length = 368 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 92/358 (25%), Positives = 149/358 (41%), Gaps = 20/358 (5%) Query: 182 RVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGM-EKLAETRMGYNEVTFLSD 240 V+P+GP H P L V+GEQI D ++R Y +RG+ E+L TR + L Sbjct: 13 YVLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERL--TRTTIPQGLHLVS 70 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 +C AHS+ + ++E L I +RA +R + EVER HL + +G Sbjct: 71 HICAADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHLSTMKEVLTILGLQ 130 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 ++ + + L G+ + GGVR+D+ ++ R + + Sbjct: 131 RDAEHVQKLHHGLFEVMQHLCGTSSPPNYIVPGGVRQDLSSTEQESMALQFRRLERLMYR 190 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKT 404 V+ + + +R G+G+L R+ A D R D Y Y P + Sbjct: 191 FVDRFIDHRGVLRRCVGVGVLSREAAEQFGVRGPMARAAGIGFDARIDRAYGAYAQFPPS 250 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 T GDV++R+++ E F+SL + L N+P P +E+ R Sbjct: 251 RVTQERGDVYARLVIFSLEAFESLKLAIRVLANLPSGDWAGNAPDSVPQGSVTSNIESAR 310 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 G + KL R A + + R +L G + DAPLII S C +C++ Sbjct: 311 GTLRYTVQSNGV-KLTSVRIDAPRQFDRLIARTILAGMNIDDAPLIIASASACTACSE 367 >UniRef50_D1Y9R2 Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=3 Tax=Propionibacterium acnes RepID=D1Y9R2_PROAC Length = 382 Score = 234 bits (597), Expect = 7e-60, Method: Composition-based stats. Identities = 90/380 (23%), Positives = 142/380 (37%), Gaps = 22/380 (5%) Query: 161 RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHR 220 T S++ + + +G LH + VD + I + + +HR Sbjct: 6 SMPLTHPSQSTDGDPGKKYEVTWLDLGHLHPSRPGLVTITTTVDDDVITSSQVNVGNLHR 65 Query: 221 GMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEV 280 G EKL E R Y ++ L+ R F +++E+A+GI +P R IR++L E Sbjct: 66 GDEKLFEARG-YRQIPMLASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEF 124 Query: 281 ERLHSH---LLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR 337 R+ SH L +G C G + E + + + G+R + IGG+R Sbjct: 125 SRITSHFTFLSWVGHHCDDAGLENAIATAI---ENARRIWQRCSGNRIHPMITRIGGLRI 181 Query: 338 DILKEQRLQTLKLVREMRADVSELVEMLLATPNME----------QRTQGIGILDRQIAR 387 E + + + + A V+ L L AT + R G + R Sbjct: 182 HPESEWQPTLGEWLDDANALVTWLRTALDATVGVRGVAVIPTNMIDRYGLSGPVSRASGV 241 Query: 388 DLRFDHPYADYGNIPK-TLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMP--DTPLL 444 DL A Y + + GD +SR+ + S ++ LD +P D PL Sbjct: 242 DLDTRRRTAVYDELKWPEVVIEPRGDAYSRLATLCNDAAVSSSLCRQILDRLPNLDGPLE 301 Query: 445 TEGFS--YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGN 502 T + P +EAP G + + +R R T+AN VL +L G Sbjct: 302 TRLPTTIKAPRGRTWTTIEAPWGRAGYLLESRGSTTPWRMALRTPTFANVQVLEAVLPGT 361 Query: 503 TVSDAPLIIGSLDPCYSCTD 522 V D I SL D Sbjct: 362 RVDDVEATIASLGWTLGDLD 381 >UniRef50_B5ZIZ9 Ni Fe-hydrogenase III large subunit-like protein n=3 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=B5ZIZ9_GLUDA Length = 510 Score = 230 bits (586), Expect = 1e-58, Method: Composition-based stats. Identities = 109/537 (20%), Positives = 178/537 (33%), Gaps = 80/537 (14%) Query: 24 AVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSM 83 A++ ++ D+V L L+ D + +AL + Sbjct: 15 ALIRRGEAEAGAWRFRLEEEGWRDLVATLARDPLP-FVGLWA-DGQD-------VHALFL 65 Query: 84 EGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDD 143 EG E+ + A V + ++ PAA ER + D++G + D R + Sbjct: 66 EGGERVLV---ASVAPYGGRYLGLSGVRPAASLPERCVHDLWGFEAMEARDTRPWLDHGV 122 Query: 144 WPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFV 203 W RP P + P ++ +GP PGH RL + Sbjct: 123 WTA--------TWPLGPRPGPVSWPPDPPEFRPQPGGGTILGIGPADGGHHTPGHLRLAL 174 Query: 204 DG-EQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFA------------- 249 G + + A++RL Y HRG + R+CG+ A Sbjct: 175 GGRDTVGGAEWRLGYAHRG----------------VMARLCGLDAPAAVRLAGRAAAGAS 218 Query: 250 --HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 H A ++E A V R +L E+ER+ +HL ++ + G + Sbjct: 219 VAHQSALCRAIEAASDSMVGTGTERCRVLLAEIERVATHLHDVARTARAAGATALAAECE 278 Query: 308 RVREKSMTMAELLIGSRKTYGLNLIG------GVRRDILKEQRLQTLKLVREMRADVSEL 361 +RE M + + G R L G + V ++ + Sbjct: 279 YLRESVMDLCGRMFGHRLLMDLVRPEGPDGHAGAGDAEDGAAIAAVARQVADLVRGRMRV 338 Query: 362 VEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKTL 405 V P +E R G G+L AR DLR P Y Sbjct: 339 VGRCRDWPGLEARVVGRGVLGEHTARMLGVGGVAGRASAREEDLRRLVP--GYRLGWLDT 396 Query: 406 FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRG 465 GDV +R+ +R+ E S+ +LE A + PL G + +G E PRG Sbjct: 397 GVRRAGDVAARIDLRLAEIGGSVRILESAGAD---GPLPGTGTPPRRDGEGVGCAEGPRG 453 Query: 466 EDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 +W + + + R A+ L ++L G D +I+ S + D Sbjct: 454 AVWYWVRM-EGGAVRAAHVRDPALAHVAALEHVLAGADADDVAMIVRSFGLSAAAAD 509 >UniRef50_Q056K8 Metal (Ni/Fe) hydrogenase, large subunit n=4 Tax=Leptospira RepID=Q056K8_LEPBL Length = 469 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 92/404 (22%), Positives = 155/404 (38%), Gaps = 25/404 (6%) Query: 143 DWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLF 202 D+ + RK ++ + + D + VGP+H EPGHFR Sbjct: 66 DFERYITADRKTDLEKFVTKKGIKDLVYKGLKVPIPASHYSHAVGPIHAGVIEPGHFRFI 125 Query: 203 VDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENAL 262 V GE+I + D RL + RG+ L + + + ++ + G A+++A++ E A Sbjct: 126 VKGEEIRNLDIRLGFQKRGLIDLIKGKGS-KDSFPYAEAISGDSTIAYAIAFSRIFEEAQ 184 Query: 263 GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIG 322 I VPQ R +LLE+ER+ +H+ ++G VG+ R + + E L G Sbjct: 185 KIAVPQELDFARLVLLELERIATHIGDMGAIAGDVGYYPLQGVCSLQRGVPLGVMEALTG 244 Query: 323 SRKTYGLNLIGGV--RRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGI 380 +R G G + R+ + +E+ + + +R + ADV E +R Q GI Sbjct: 245 NRFGRGALSPGKIVLRKGLNREKLNELAERIRSVTADVVAHFERAANVSTNRERLQSCGI 304 Query: 381 LDRQIARDLRFDHPYADYGNIPKTLFTFT------------------GGDVFSRVMVRVK 422 + ++ R L F + + L + GD ++R +R + Sbjct: 305 IRQKQVRHLGFIGMVEKCTGLSRDLRSLEKSYMFSSPISLELNRDHMKGDAWARFYLRCE 364 Query: 423 ETFDSLAMLEFALDNMPDTPLLTEGFSY----KPHAFALGFVEAPRGEDVHWSMLGDNQK 478 E +S L A+ + L G VE RG + L Sbjct: 365 ELKNSGKWLIDAIPKLEAAFSLKFGKVPSKSSVKKGTYYSAVEGWRGPVLVSLDLDATGS 424 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 + R + NW L +RG + D PL S + Y D Sbjct: 425 IENAYIREVSVPNWHALELAVRGEYIGDFPLNNKSFNLSYVGVD 468 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 219 bits (558), Expect = 2e-55, Method: Composition-based stats. Identities = 76/353 (21%), Positives = 130/353 (36%), Gaps = 23/353 (6%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 GP E F GE I D + R K+ + + L Sbjct: 43 PGEFTFNYGPATGGLIESVAFDFHTPGELIKHVDVYPYIKTR---KIKVRGLSPEDALLL 99 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 +R+ G +H+VA+ +VE+AL I+VP+ R I+LE+ER+ S+L + C G Sbjct: 100 VERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVVKRLCEPAG 159 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 F Q +RE + G R + + +GG + + L ++ +++ + Sbjct: 160 FGVPQNQIAYLRENIARIITSFAGHRYFFSSSYVGGCQFN-----GLVLESVIEDVKEEF 214 Query: 359 SELVEMLLATPNMEQRTQGIGILD-----------RQIARDLRFDHPYADYGNIPKTLFT 407 + LL + R Q G + I D R D Y + Sbjct: 215 EGIFNDLLQSKIFLNRLQNNGKISSSDMLGPAARAAGIEVDARIDEKRLPYSKLGFKPIV 274 Query: 408 FTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGED 467 F D F R VR KE S ++ A+ ++P K + VE+P+G+ Sbjct: 275 FDEPDAFGRFYVRSKEILSSADLISKAIRFSGNSPPA---KIEKTNGEGAARVESPQGDL 331 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 ++ + D K+ + + + N + + GN +D S S Sbjct: 332 FYYVKIND-GKISDVQISSPSLLNIEAFKKSMIGNIFTDYHFNWESFGIWVSE 383 >UniRef50_P21301 NADH-ubiquinone oxidoreductase 49 kDa subunit homolog n=3 Tax=Trypanosomatidae RepID=NDUS2_TRYBB Length = 386 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 129/384 (33%), Gaps = 46/384 (11%) Query: 180 DARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 GP H + L+ GE IV D + Y+HRG EKL E + + Sbjct: 9 HLYRFTFGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYK-SVEQCLPYF 67 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGF 299 DR+ + + + E L + R +R +++E R + LL + +G Sbjct: 68 DRLDYVSVCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGC 127 Query: 300 DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS 359 + + F R+K MT +L G R ++ G+ D + L L+ + Sbjct: 128 LSPLLWSFEERDKLMTFFDLCCGCRMHLAFMVLLGILDDFVFGFVDFLLLLIISCLFVMD 187 Query: 360 ELVEMLLATPNMEQRTQGI--------------GILDRQIA--RDLRFDHPYADYGNIPK 403 + + R +G+ G+L R + D R Y Y Sbjct: 188 CYDLLFVGNRLFYLRLRGLSFFDLYDLVFNSLSGVLSRSLGMVWDCRLFSCYELYFMFCY 247 Query: 404 TLFTFTGGDVFSRVMVRVKETFDSLAMLEF------------ALDNMPDTPLLTEGFSYK 451 GD F R+ +R+ + SL + + L + + E Sbjct: 248 DYCFCFIGDAFDRLFLRLFDMRMSLLICKQCFFVGFFVFGFVCLFDYLYCDITIETIIML 307 Query: 452 --------PHAFALGFVEAPRGE----DVHWSMLGDNQKLFRWRCRAATYANWPVLRYML 499 + VE P+GE R R R A + + +L L Sbjct: 308 FYSLWCCCLPGISFACVEHPKGEYCLLLCFCV-----GLCSRLRLRCADFLHICLLDVCL 362 Query: 500 RGNTVSDAPLIIGSLDPCYSCTDR 523 RG + D ++G++D + DR Sbjct: 363 RGFLLHDLVAVLGNIDVVFGSVDR 386 >UniRef50_D1HPS0 Whole genome shotgun sequence of line PN40024, scaffold_116.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1HPS0_VITVI Length = 441 Score = 213 bits (542), Expect = 2e-53, Method: Composition-based stats. Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 36/273 (13%) Query: 255 TNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSM 314 N+ E I+VP+RA IR I+LE+ R+ SHLL LG +G T F FR RE Sbjct: 8 ANAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGVQTPFFYIFRERELVY 67 Query: 315 TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQR 374 + E G R + IGGV D+ + L V+E ++++ P +R Sbjct: 68 DLFEATTGMRMMHNYFRIGGVVVDLPHGWIDKCLDFCDYFLTGVAEYQKLIMRNPIFLER 127 Query: 375 TQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSRVM 418 +G+GI+ + A DL Y Y + GD SR + Sbjct: 128 VEGVGIIGVEEAINWGLSGPMLQASGIQWDLLKVDHYECYDEFDWEVQWQKEGDSLSRYL 187 Query: 419 VRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 VR+ E + +++ AL +P P A L D Sbjct: 188 VRIGEMMAFIKIIQQALKGIPGGPYENLEIRCFDRARD--------------LELND--- 230 Query: 479 LFRWRCRAATYANWPVLRYMLRGNTVSDAPLII 511 F +R ++ N +L +++ ++D I+ Sbjct: 231 -FEYRFI--SFINLQILPQLVKRMKLADIMTIL 260 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 212 bits (541), Expect = 2e-53, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 146/394 (37%), Gaps = 53/394 (13%) Query: 191 ITSDEPGH--FRLFVDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 TS + GH + VD E IV Y RG+EK+ + + R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAP-ETAPVIVQRICGVCP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFF 307 H++A +++++L IEVP+ +R + L ++SH ++ L + Sbjct: 68 IPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIAPDFVPENLMADAI 127 Query: 308 ----RVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 +R+ + + +++ G IGG+ +I + R + +++++ V E VE Sbjct: 128 NSVSEIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLKQLKPKVDEHVE 187 Query: 364 MLL---------------------ATPNMEQR-----------TQGIGILDRQIARDLRF 391 +++ + R D +IA+ Sbjct: 188 LMIGLIEDKGLPKGLGVHNQPTLASHQIYGDRTKFDLDRFTEVMPESWYDDPEIAKRACS 247 Query: 392 DHPYADYGNIPKTL-----FTFTGG----DVFSRVMVRVKETFDSLAMLEFALDNMPDTP 442 P Y + G V ++ + R E +LA LD + + Sbjct: 248 TIP--LYDGRNVEVGPRARMVEFQGFKERGVVAQHVARALEMKTALARAIEILDELDTSA 305 Query: 443 LLTEGFSYKPHAF-ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRG 501 + F + +G +E PRG DVH + + +N K+ + T N P + G Sbjct: 306 PVRADFDERGTGKLGVGAIEGPRGLDVHMAQV-ENGKIQFYSALVPTTWNIPTMGPATEG 364 Query: 502 NTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSK 535 P +I + DPC SC V +VD R Sbjct: 365 FHHEYGPHVIRAYDPCLSCATHVMVVDDEDRSVI 398 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 147/394 (37%), Gaps = 55/394 (13%) Query: 191 ITSDEPGH--FRLFVDGEQIV-DADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 TS + GH + VD E IV Y RG+EK+ + L R+CG+C Sbjct: 9 PTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNP-ETAPVLCQRICGVCP 67 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV----GFDTGF 303 H++A +++++L IEVP+ +R L ++S ++ L F T Sbjct: 68 IPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIAPDFVPEEDFTTAV 127 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363 VR+ + ++L G +GG+ R+I + + + ++ + D+ + VE Sbjct: 128 KSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDRLKAFKPDMEKHVE 187 Query: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVF--------- 414 ++ + + +G+G++D + L Y + F+ + + Sbjct: 188 LMKSFIAARELPEGLGVVDAPL---LASSASYGNLDEFDYDNFSEVLPEAWYDDPEIGKK 244 Query: 415 ---------------------------------SRVMVRVKETFDSLAMLEFALDNMPDT 441 ++ + R +E ++ + L+ + + Sbjct: 245 ACTTIPLINGKNVETGPRARMDKFNGFKDKGVVAQHVARAEEMLNNYNLTIDLLEQIDTS 304 Query: 442 PLLTEGFSYKPHAF-ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLR 500 + + +G +E PRG +VH + + D+ K+ + T N P + Sbjct: 305 APARADYDDRGTGKLGIGVIEGPRGTNVHMANVKDS-KIQFYSAIVPTTWNIPTMGPATE 363 Query: 501 GNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 G +I + DPC SC V +VD + Sbjct: 364 GFHHKYGADVIRAYDPCLSCATHVMVVDDEDKSI 397 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 208 bits (529), Expect = 5e-52, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 124/390 (31%), Gaps = 59/390 (15%) Query: 188 PLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 ++ T+ GH +L + D + +Y RG EK + R CG Sbjct: 6 EINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGK-PAEFAPIAVSRFCG 64 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN-LGLSCHFVGFDTGF 303 IC AH+ + ++E+A GI P+ +R + ++HSH L+ ++ F+ Sbjct: 65 ICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIAPDFIPEKDRV 124 Query: 304 MQFFRV---REKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 R+ R+ + + + G +GG+ + I + +E E Sbjct: 125 EYITRIQQMRKTGQYIVDTIGGEAIHAPNIKVGGMLKSITPSAVSKIYYKCKEFEKLAKE 184 Query: 361 LVEMLLATPNMEQRT-------------QGIGILDRQIARDLR------FDHPYADYGNI 401 VE L+ P E RT G L R H Y Y Sbjct: 185 QVEYLI--PIFENRTLVDGTEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVY 242 Query: 402 PKTLFTF---------------------------TGGDVFSRVMVRVKETFDSLAMLEFA 434 K + + + R E + Sbjct: 243 EKEVAVQACQLFQEYNGRLMEVGPRARFAKFHDFKEKGAMAIHIARAYENVIHVKRAMEI 302 Query: 435 LDNMPDTPLLTEGFSYKPHAF--ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 ++ + L LG EA RG + H + + + ++ + AT N Sbjct: 303 IEELNVDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQASIDEKGRITYYNAIVATTWNI 362 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTD 522 P++ + + A ++ + DPC SC Sbjct: 363 PLIGKAVEAHY-KFAEHVVRAYDPCVSCAT 391 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 75/382 (19%), Positives = 127/382 (33%), Gaps = 46/382 (12%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 L+ + + DA + RG EKL + R+CG+C +H + Sbjct: 12 IAGEAKLVLYEENGTVQDALFIATAPIRGFEKLVVGKNPLF-AVEAVMRICGLCHASHGI 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV----GFDTGFMQFFR 308 A + ++ENA+GI P+ +R L V R+ SH+L + + + Q Sbjct: 71 AMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIEEKREEVLFQLMD 130 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 K + G+ +GG+ + ++ E+ +L Sbjct: 131 FHAKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARLPKLTGQWEEIAHLLTDE 190 Query: 369 PN-----------------------MEQRTQ-GIGILDRQIARDLRFDHPY--------A 396 R ++ + R D+P+ A Sbjct: 191 DIQTEVADELREKKAENNYLVSSLFYGDRFNINAERIETMPYYEYRKDNPHSKESTTLIA 250 Query: 397 DYGNIPKT---------LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEG 447 YG FT ++ RV++T +L LE LD++ Sbjct: 251 FYGGEKVEAGPRARMKVYREFTDSSLYGLHTARVQDTTLALIRLEEILDSIKMDEPFRTK 310 Query: 448 FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDA 507 +G EAPRG +H LGD ++ + T N PV+ M +G +V A Sbjct: 311 NIVFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIPVMEEMAKGLSVKAA 370 Query: 508 PLIIGSLDPCYSCTDRVTLVDV 529 ++ DPC CT V + Sbjct: 371 EAVMRLYDPCIPCTTHVVRLGG 392 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 204 bits (520), Expect = 6e-51, Method: Composition-based stats. Identities = 90/405 (22%), Positives = 150/405 (37%), Gaps = 59/405 (14%) Query: 188 PLHITSDEPGHFRL--FVDGEQIVDADYRLFYVH-RGMEKLAETRMGYNEVTFLSDRVCG 244 + T+ GH +L VD E IV+ Y L RG E + + + R+CG Sbjct: 11 EIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGK-PAEFAPIAVMRICG 69 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD---- 300 IC H +A ++ENA+ EVP +R ++ RLHSH L+ L+ Sbjct: 70 ICQTTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETD 129 Query: 301 ---TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 R+R+ + +++ G +IGG+R +I + + + +R+ D Sbjct: 130 LKIELIKLIQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKD 189 Query: 358 VSELVEMLLATPNMEQRTQGIGILD------------------RQIARDLRFDHPYADYG 399 EL E +E+ + IGI D I D + P Y Sbjct: 190 AYELYEKYTE--LIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYY 247 Query: 400 NIPKTLFT---------------------------FTGGDVFSRVMVRVKETFDSLAMLE 432 + + T GG + R +E ++ Sbjct: 248 DDEEAKQTTTIQIPLYAGVPAEGGPRARMVKFGNFREGGSAMDINIARAQENLGAVYRAL 307 Query: 433 FALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 LD + YK F +G EAPR + H + +G + K+ +R AA+ N+ Sbjct: 308 EILDELDLNGKTRAEVEYK-DGFGIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNF 366 Query: 493 PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTV 537 P++ + G A +I+ + D C SC V + D ++ V Sbjct: 367 PIVEKAIEGYPQQYAEVIMRAYDICASCATHVIVKDEETKEIIEV 411 >UniRef50_Q1WLV6 Mitochondrial NADH:ubiquinone oxidoreductase 49kD subunit 7 (Fragment) n=1 Tax=Chlamydomonas incerta RepID=Q1WLV6_CHLIN Length = 277 Score = 204 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 1/200 (0%) Query: 176 EGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 + + GP H + L + GE I+ AD + +HRG EKL E + Y + Sbjct: 78 PAKVNNFTLNFGPQHPAAHGVLRLVLEMQGEIIMRADPHIGLLHRGTEKLLEYKT-YLQG 136 Query: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH 295 DR+ + +Y ++E L + VP R IR + E+ R+ +HLL + Sbjct: 137 LPYFDRLDYVSMMCMEHSYVLAIEQLLNLSVPLRGQYIRVLFSEITRVLNHLLAITCHSM 196 Query: 296 FVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 VG T F+ F REK E + G+R G +GGV +D+ R+ Sbjct: 197 DVGALTPFLWAFEEREKLFEFYERVSGARMHAGYFRVGGVSQDLPIGLLRDVYDWARQFG 256 Query: 356 ADVSELVEMLLATPNMEQRT 375 + E+ E+L ++RT Sbjct: 257 LRLDEMEELLTGNRIWKERT 276 >UniRef50_D2PJN4 Formate hydrogenlyase subunit 5 (HycE) n=10 Tax=Sulfolobaceae RepID=D2PJN4_SULIS Length = 391 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 63/367 (17%), Positives = 126/367 (34%), Gaps = 22/367 (5%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 E + GP E F + +GE+I+ D + Y +R ++ Sbjct: 31 EKCEENKPNITQTYGSFKFIYGPSAGGLLETIKFIITTNGEKILGIDAEV-YKNR---EI 86 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 + + ++ +R+ +H++++ +VE++L +E R +E+ER+ + Sbjct: 87 VISGLTVDDALLRVERINAPFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRN 146 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 HL + + + EK + + G R +G+N I GV D L Sbjct: 147 HLFVISRLTETTSLNVPTYHLLHLVEKVNRLIGKMCGHRYFFGVNAINGVNCDF--GNLL 204 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGIL-----------DRQIARDLRFDHP 394 + + + + ++ + LL + R Q G + + D R D Sbjct: 205 RIID----ITKEFKQIFDGLLESRIFIDRLQENGKIIDENSIGPAARAAGLTYDARKDFK 260 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA 454 Y ++ D F R +VR E +S +L D + ++ + Sbjct: 261 ALPYEDLGFRTVITQEADSFGRFLVRGMEIIESAKILVELHDEIKNSNNERGKNHKQGGG 320 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSL 514 L VE+P G+ ++ L N + + N + + +D S Sbjct: 321 EGLARVESPSGDLAYYVKLN-NGIIDSVSLLTPSQVNLNLFLKSVINTIFTDFQFNWESF 379 Query: 515 DPCYSCT 521 S Sbjct: 380 GIWVSEI 386 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 200 bits (510), Expect = 8e-50, Method: Composition-based stats. Identities = 71/379 (18%), Positives = 125/379 (32%), Gaps = 45/379 (11%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 L+ + + DA + RG EK+ + R+CG+C +H + Sbjct: 15 IAGEAKLILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLF-AVEAVMRICGLCHASHGI 73 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV----GFDTGFMQFFR 308 A + ++E+A+G+ P+ +R L + R SH L + + + + Sbjct: 74 AASEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAGDLIKEEKRNDVLFKLMD 133 Query: 309 VREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLAT 368 K L G+ IGG+ +++ A E+L+ Sbjct: 134 FHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDE 193 Query: 369 PN--------------MEQRTQGIGILDR-QIARDLRFDHPYAD---------------- 397 + G DR I D PY + Sbjct: 194 DIQTEIADELREAKRPFKYLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSF 253 Query: 398 YGNIPKT---------LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF 448 Y F ++ + R+++T ++ L LD + G Sbjct: 254 YDGEKVETGPRARMITYREFRDESLYGLHLARIEDTRLAIQRLGEILDEIRIEEPFRTGD 313 Query: 449 SYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP 508 +G EAPRG +H+ LG+ ++ + R T N PV+ M +G +V A Sbjct: 314 ITFRPGKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKAAE 373 Query: 509 LIIGSLDPCYSCTDRVTLV 527 ++ DPC CT V + Sbjct: 374 AVMRLYDPCIPCTTHVVRL 392 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 200 bits (510), Expect = 9e-50, Method: Composition-based stats. Identities = 86/449 (19%), Positives = 156/449 (34%), Gaps = 101/449 (22%) Query: 183 VIPVGPLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLS 239 + V + T+ GH +L + D + D+ RG+EKLA + +V ++ Sbjct: 1 MTKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKT-MEQVPKIA 59 Query: 240 DRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN---------- 289 RVCGIC AH++A T ++E ++G E+P A +R+IL R+HS L+ Sbjct: 60 SRVCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALHNILILPDFYI 119 Query: 290 ------LGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRR------ 337 L + + + R+RE + T+ + G IGG+ Sbjct: 120 PGTEKKFNLFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRA 179 Query: 338 -----DILKEQRLQTLKLVREMRADVS-----ELVEM----------------------- 364 D+ KE + + + M + E VE+ Sbjct: 180 KQKMADLAKEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKLGYHNQGVMATAS 239 Query: 365 LLATPNMEQR-TQGIGILDRQIARDL-----------------------RFDHPYAD--- 397 + + +++ T D +P + Sbjct: 240 MYGSSSLDDNPTWDFTRWKETRPWDWYMGEVTIDLEDPSYPIGGTTKIGTKANPQMEACT 299 Query: 398 ----YGNIPKTL------FTFTGGD---VFSRVMVRVKETFDSLAMLEFALDNMPDTPLL 444 Y P + TF D F++ + R E D + LDN+ + + Sbjct: 300 GVPTYDGQPVEVGPRARLATFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKV 359 Query: 445 TEGFSYKPHA-FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNT 503 + EAPRG ++H + + + K+ + T N+P L G Sbjct: 360 LADHIPQGDGSMGWAANEAPRGSNIHLARV-KDGKVLWYDMLVPTTWNFPTCSRALTGAP 418 Query: 504 VSDAPLIIGSLDPCYSCTDRVTLVDVRKR 532 A +++ + DPC SC + +V+ ++ Sbjct: 419 WQIAEMVVRAYDPCVSCATHMIVVNEEEK 447 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 200 bits (509), Expect = 1e-49, Method: Composition-based stats. Identities = 81/411 (19%), Positives = 149/411 (36%), Gaps = 87/411 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + L + I DA FY RG+EK+ R + + ++ R+CGICG AH + Sbjct: 11 VEGEASLNLVWERGVIKDAKIS-FYSTRGIEKVLRER-PFMDALVINPRICGICGHAHLI 68 Query: 253 AYTNSVENALGI-EVPQRAHTIRSILLEVERLHSHLLNLGL--SCHFVGFDTG------- 302 A ++ENA+GI E+P++A R + E + +H+ L F+ F Sbjct: 69 ATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLSQFEPF 128 Query: 303 ----FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE----M 354 + + + + + + L G + GG+ + + + L+ L LV+E Sbjct: 129 KGERWKRAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKTFF 188 Query: 355 RADVSELVEMLLA---------------------------TPNMEQRTQGIG-----ILD 382 +VSE +E+ L P+ ++ + + Sbjct: 189 EKNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGGGLAYCFNPSYKKGKGKVCKFNVRYVQ 248 Query: 383 RQIARDLRFDHPYADYGNIPKTLF----------------TFTGGDVFS-RVMVRVKETF 425 A D +P Y +P GD ++ RV R+ E Sbjct: 249 ELEAADYSKANPV-RYKGLPYETGPLARELISKNPLVLKLYKNYGDSYAVRVAARLAEIK 307 Query: 426 D----SLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFR 481 D +L+ ++++ + L E S G VEA RG +H ++ + K+ Sbjct: 308 DLLEILEKLLKELMNHLEEPSCLWEDRS-DESGEGFGVVEAARGTLIHRVVI-EKGKIKD 365 Query: 482 WRCRAATYANWPV--------LRYMLRG--NTVSDAPLIIGSLDPCYSCTD 522 ++ + N + G + + A +++ S D C CT Sbjct: 366 YKVITPSQWNLGPRCKKYLGVAEKAIVGLDSELK-AQMVLRSFDLCSVCTT 415 >UniRef50_UPI000038DF6E Ni,Fe-hydrogenase III large subunit n=1 Tax=Ferroplasma acidarmanus fer1 RepID=UPI000038DF6E Length = 384 Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats. Identities = 81/370 (21%), Positives = 145/370 (39%), Gaps = 31/370 (8%) Query: 166 TDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKL 225 E + N GP E +F L GE I D Y R + K+ Sbjct: 29 PAVENTDQFADKNPGEIYFNYGPSAGGLRESVNFSLLTPGETIRDVIIHPEYKKRDL-KI 87 Query: 226 AETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHS 285 + +R+ G ++S+ Y +VE ALGIE + + +R + LE+ER+ S Sbjct: 88 L--GDPVSRALLKVERINGFHAASNSIGYILAVEEALGIENSE-LNDMRIVELELERIRS 144 Query: 286 HLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 ++ + C GF Q +RE+ + G R + +N G V D + Sbjct: 145 NIDVIKGMCESAGFAVPEKQLLYLREEVARIISRAFGHRYFFSVNGFGTVSGDFSTIK-- 202 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ-----------IARDLRFDHP 394 + + ++ + LL++ R Q GI+ + D R D Sbjct: 203 -----LNAIEKQFRDIYDGLLSSKIFLDRIQENGIVKNENSTGPAARAAGFKFDARKDSK 257 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLE-FALDNMPDTPLLTEGFSYKPH 453 DY N T T +G D FSR++VR +E F+++ +++ + + N+ Sbjct: 258 SLDYRN--FTPVTESGADSFSRLVVRSEEVFEAINIIDSYGVKNIK----TRTKNELTGS 311 Query: 454 AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTV-SDAPLIIG 512 +E+P G+ ++ + +N KL + + +Y N + R L+ N + +D + Sbjct: 312 GKGSARIESPAGDIFYYVNI-ENGKLNDIQMVSPSYLNLRLFREALKNNNIFTDFFFVWE 370 Query: 513 SLDPCYSCTD 522 S S + Sbjct: 371 SFGIWISELE 380 >UniRef50_Q5FU77 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans RepID=Q5FU77_GLUOX Length = 479 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 93/481 (19%), Positives = 152/481 (31%), Gaps = 61/481 (12%) Query: 60 LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGER 119 L + +D R Y L +EG A + R + + + R A WGER Sbjct: 39 LISCWADDARA--------YVLLLEGDRPLL----ASRAVEERRYLAPSSRFAGAEWGER 86 Query: 120 EIRDMYGLIPVGLP-DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGN 178 D+YG+ + + + W + P Sbjct: 87 VAYDLYGVEAMDARGNGAPALDEGGWTSTWPLSSRPGPAAGGLRPLAGSHLLRPEQT--- 143 Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 P V ++ + HRG+ R E L Sbjct: 144 -------------GLSGPLELSFEVLKGKVRSVEVCAGGAHRGVVSRLLGRTP-EEAMPL 189 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVG 298 R+ AH +A+ +V A G+ + +LLE+ER+ HL ++ + V Sbjct: 190 VSRMTAGGFVAHPLAFARAVAQARGLVPGPGIRDVWMVLLEIERMSLHLFDMARTARGVD 249 Query: 299 FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 + RE SR+ + G R + E + M+ + Sbjct: 250 AELLATHCDHAREAIARACAEQGVSRRLMDMVACDGFRDGL--EIVPLAQAVHAAMQPRL 307 Query: 359 SELVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIP 402 + L E+ R G +LD ++A D+R + Sbjct: 308 AALEEL---HRVFAPRLDGFAVLDVRLAERFAVGGVTGRASGRSMDMRRREAGMRLEALR 364 Query: 403 KTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHA--FALGFV 460 T + GD +R +R+ E DSL +LE L + E P +G Sbjct: 365 AT--GSSQGDARAREGLRLAEIRDSLKLLERIL-----GSIGLEDDEPAPDRTDEGIGVA 417 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E RG+ +W L + ++ R + PVL MLRG VS P +GS+ + Sbjct: 418 EGARGDVWYWVRLKE-GRIESLHVRDPGVSLLPVLGAMLRGYPVSRVPAALGSIGISPAG 476 Query: 521 T 521 Sbjct: 477 I 477 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 194 bits (493), Expect = 8e-48, Method: Composition-based stats. Identities = 73/449 (16%), Positives = 137/449 (30%), Gaps = 119/449 (26%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 ++ V+ IVD + + RG EK+ E R + + ++R+CGIC AH+ Sbjct: 13 ISGFLEIKVKVEDNIIVDGETS-GLLFRGFEKMLEGRPPL-DSIYFTERICGICSTAHAT 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREK 312 A T ++ENAL I IR ++ E + +HL + ++ +E Sbjct: 71 ASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLPNIRPIYPQEY 130 Query: 313 --------------------------SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 + +L G +GGV +I + + Sbjct: 131 SDFRLPKKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDSYKLTK 190 Query: 347 TLKLVREMRAD-----------VSELVEMLLATPNMEQRTQGIGILDRQI---------- 385 +++ ++ +++ N G+ D+ Sbjct: 191 IQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGNFMSFGVFDKYKDKNISYVKPG 250 Query: 386 ---------------------AR------------------DLRFDHPYA-----DYGNI 401 A DL+ + Y+ Y ++ Sbjct: 251 VIINNKLENFDRDKITENIRYAWYVSDTIIENPIMNNEYTVDLKKEGAYSFVKAPRYADL 310 Query: 402 PKTL---------FTFTGG-DVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYK 451 P + +TGG R + RV ET + +L + + ++ Sbjct: 311 PMEVGPLARLKIAGEYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNNQSAYNIP 370 Query: 452 PHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV---------LRYMLRGN 502 AF G ++ RG H+ + +N+ + + T N L G+ Sbjct: 371 EGAFGEGLIDTTRGALSHFIKI-ENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIGS 429 Query: 503 TVSDAP------LIIGSLDPCYSCTDRVT 525 + + II S DPC SC + Sbjct: 430 KIDNIEKPVEIGRIIRSFDPCISCATHLV 458 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 132/420 (31%), Gaps = 80/420 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + + ++ + ++F R E R Y+E ++ R+CGIC A+ + Sbjct: 14 VEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQ-YSEAPDITSRICGICPIAYMM 72 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGFM------ 304 + ++E+ LG+ V +R +L E + SH L++ + F+G+D+ Sbjct: 73 SAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGDYP 132 Query: 305 ----QFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + R+++ + L+ G +GG + ++ + + A +E Sbjct: 133 DLVQRGLRLKKIGNQIISLIGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAE 192 Query: 361 LVEMLLATPNM--------------EQRTQGIGILDRQIARDLRFDHPYADYGNIPK--- 403 V + A P E+ G L D+ Y + Sbjct: 193 TVRWVAAFPFPDFAPDYEFVALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRPHS 252 Query: 404 ---TLFTFTGGDVF----SRV-------------------------------MVRVKETF 425 G+ F +R + R E Sbjct: 253 TALQAQLKERGNYFLGPLARFNLNFEQLTPRTQAVAQSVGMTPLCRNPFKSIIARSLEVM 312 Query: 426 DSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 + +D+ ++ + G EAPRG H+ + + + Sbjct: 313 FAAEEALRLIDSYIPPAQSVVDYTVR-AGCGHGCTEAPRGSLYHYYQIDQQGDILAAQIA 371 Query: 486 AATYANWPVLRYML-----------RGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 T N + L S +I + DPC SC+ ++V ++ S Sbjct: 372 PPTAQNQSTIEQDLWQFVEEHIDLPENQLRSQCEQVIRNYDPCISCSTHFLKLEVDRKSS 431 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 191 bits (486), Expect = 4e-47, Method: Composition-based stats. Identities = 72/477 (15%), Positives = 138/477 (28%), Gaps = 130/477 (27%) Query: 188 PLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 + + GH ++ V DG ++ DA + + RG+E + + R + ++ R+CG+ Sbjct: 8 VVDPVTRIEGHLKIEVELDGNRVHDA-WSTGLLFRGLEIILKGRDP-RDAQHITQRICGV 65 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH---------- 295 +H ++ +++A GI P+ +R+++ + SH+L+ Sbjct: 66 UPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGPETA 125 Query: 296 --------------FVGFDTG--FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 V ++Q +R K+ MA + + + GGV + Sbjct: 126 PFVPRYEGDYRLPPDVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPGGVTSTV 185 Query: 340 LKEQRLQTLKLVREMRADVSE------------LVEML-------------------LAT 368 EQ + +RE+ + + + Sbjct: 186 TAEQVEAYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVGTKNLLSYGAYPLTDEKD 245 Query: 369 PNMEQRTQGIGILD-----RQIARDLRFDHPYADYG-----NIPKT----LFTFTGG--- 411 PN + G+ A +R ++ Y P G Sbjct: 246 PNGKNLFFTRGVYAGGSFMPMSADHIREHVTHSWYESKAGGKHPFEGETVPAVDKRGGYS 305 Query: 412 --------------DVFSRVMV-------------------RVKETFDSLAMLEFALDNM 438 +R V ++ + L + Sbjct: 306 WIKAPRYESYSCEVGALARQWVGRDPQVIGLGDKAFSVMGRHFARAIETTKVAHAMLGWL 365 Query: 439 PDTPL---LTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW--- 492 + A G EAPRG HW + +N + ++ + N Sbjct: 366 EELEPGQPAFRPHDVPEKAKGFGLTEAPRGALGHWIEI-ENHVIKNYQAVVPSTWNIGPR 424 Query: 493 ------PVLRYMLRGNTVSD------APLIIGSLDPCYSCTDRVTLVDVRKRQSKTV 537 L L G V+D I+ + DPC +C V V S+ V Sbjct: 425 DDKGVRGPLEEALVGTEVADPDNPIELVRIVRAFDPCIACAVHVMEVRGGSGVSRFV 481 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 191 bits (486), Expect = 6e-47, Method: Composition-based stats. Identities = 71/432 (16%), Positives = 143/432 (33%), Gaps = 95/432 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G+ + V ++ + R E R Y E ++ R+CGIC H++ Sbjct: 15 VEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIY-EAPHITCRICGICSCGHTL 73 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVG----------FD 300 A + E+ALGI+ ++ +R +LL E+L SH+L++ L VG Sbjct: 74 ASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKSHP 133 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 ++ R++ + ++L+G +IGG + + + K + ++ D+ Sbjct: 134 DVVIRALRMKRLCNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKKLLALQKDIEV 193 Query: 361 LVEML--LATPNMEQRTQGIGILDRQIAR-----DLRFDH------------------PY 395 +E+ L P E+ T+ I +++ + D+ PY Sbjct: 194 TIELFKDLKFPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIVPY 253 Query: 396 ADYGNIPKTLFTFTGGDVFSRV-------------------------------MVRVKET 424 A ++ G +R + ++ E Sbjct: 254 ASAKRTKWHRESYAVG-ALARFNLNYEKLHPKAKEAAATLGLKPKCINPYLNTVAQIVEC 312 Query: 425 FDSLAMLEFALDNMPDTPLLTEGFSYKP----------HAFALGFVEAPRGEDVHWSMLG 474 + ++ + + + +G VE PRG +H Sbjct: 313 VHCVEDAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECD 372 Query: 475 DNQKLFRWRCRAATYANWPVLRY-MLRGNTVSDA------------PLIIGSLDPCYSCT 521 + C T N + ML+ V + +++ + DPC SC+ Sbjct: 373 ERGIFRNANCIIPTNQNTHNIELDMLK--LVPEIINQSPEEIRLSLEMLVRAYDPCISCS 430 Query: 522 DRVTLVDVRKRQ 533 + V + R Sbjct: 431 VHMVEVKLGDRD 442 >UniRef50_Q6L0U1 Formate hydrogenlyase subunit 5 n=1 Tax=Picrophilus torridus RepID=Q6L0U1_PICTO Length = 381 Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats. Identities = 73/365 (20%), Positives = 136/365 (37%), Gaps = 28/365 (7%) Query: 172 PFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMG 231 + + GPL EP F + GE+I +Y +Y ++ + + + Sbjct: 34 HENEKRTDFSFNFSYGPLTGGIPEPFRFDINTSGEKI---NYIKYYNYK-IRNIKLKGIN 89 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 + +R+ G ++++ + +SV +AL IE+P I +E+ER+ +HL L Sbjct: 90 IKDAIPYIERINGNFAASYTICFLSSVMDALEIEIPYELKMYYIIEMELERIRNHLYVLA 149 Query: 292 LSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLV 351 C GF+ ++E+ + ++ G R +G+N LK +RL K++ Sbjct: 150 RMCEPAGFNVPANMLMHIKERFSRIIDITFGHRYFFGVNQ--------LKSKRLDIHKMI 201 Query: 352 REMRADVSELVEMLLATPNMEQRTQGIGILDRQI-----------ARDLRFDHPYADYGN 400 + +++++ LL + R Q G + D R+D Y + Sbjct: 202 NVYKNEINDIYLNLLNSRLFTDRLQDNGRILDDDMTGPAARAAGYKYDSRYDFDIFYYND 261 Query: 401 IPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFV 460 + T GD SR VR E +S+ ++E A + D+ L V Sbjct: 262 TGYEIKTDDSGDAMSRFNVRFNEILNSIDIIENAENKTGDSCYNI----LDGSGTGLTRV 317 Query: 461 EAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 E+P G+ + L N + + A N G +D S + Sbjct: 318 ESPSGDVAFYVELS-NGVIKDLKIHTALERNMKSFLKSSTGTIFTDFHFNFESFGLWAAD 376 Query: 521 TDRVT 525 + Sbjct: 377 EVNII 381 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 191 bits (485), Expect = 7e-47, Method: Composition-based stats. Identities = 58/381 (15%), Positives = 142/381 (37%), Gaps = 57/381 (14%) Query: 194 DEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVA 253 + +++ I + F+ +RG+E+ R + + ++ R+CGICG AH +A Sbjct: 12 EGEAELKIYQKDGIIDFVEI-FFWQYRGIEQYLVNRH-FLDALVINPRICGICGHAHLLA 69 Query: 254 YTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQFFRVRE 311 ++ENAL +++ ++A +R I +E + +H+ L + + ++ + + Sbjct: 70 TAKAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVK 129 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNM 371 K + ++ G + GGV D+ ++ L++++R D+ +++ + ++ Sbjct: 130 KISKIIAIIGGQFPHNSYIIPGGVTCDLTNLDIIKIKNLLKKLREDIYTIIDENGKSHDL 189 Query: 372 EQRTQGIGILDRQIARDLRF---------------------------------DHPYADY 398 E+ + L + I + L + Y + Sbjct: 190 EKFFEN---LPKNIGKSLNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEV 246 Query: 399 GNIPKT--------LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY 450 G + + ++ +++R+ R+ E + L ++++ T + Sbjct: 247 GPLARNLQNKTINTIYEKYQDSIYTRIFARLYEILLIINYLIKEIEDLDITQKSFLNYKK 306 Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW--------PVLRYMLRGN 502 + + +EAPRG +H + +N+K+ + + + L Sbjct: 307 RTCGSGVSVIEAPRGSLIHKIKI-ENEKIKFYDIVMPSQFYLSNGTKEKPSASQMALIRE 365 Query: 503 TVSDAPLIIGSLDPCYSCTDR 523 + I D C C Sbjct: 366 EIKFIDTIFKCFDICAVCVTH 386 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 82/465 (17%), Positives = 141/465 (30%), Gaps = 116/465 (24%) Query: 188 PLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 + + GH ++ V D + D + RG EK + R E + R+CG Sbjct: 5 TMEPVTRIEGHAKITVHLDDAGNVEDTRLHVME-FRGFEKFLQGR-PIEEAPRIVPRICG 62 Query: 245 ICGFAHSVAYTNSVENALGIE---VPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVG- 298 IC H +A +V+ G E V A+ +R I+ +HSH L+ F+ Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 299 --------------FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 +Q +R+ ++ + G + GG+ ++ E + Sbjct: 123 KDRKTRNVFQIIKDAPDIALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQ 182 Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILD----------RQIARDL----- 389 LK + +E+ + P E+ + L + D+ Sbjct: 183 KDLLKKAQRNVELAEATLELAV--PIFEENIDLVNSLGNIETYHTGLVKDGVWDVYDGIV 240 Query: 390 ----------RFDHP--YAD--------YGNIPKTLF--TFTGGDVF-----SRVMV--- 419 R P YAD Y + V+ SR+ V Sbjct: 241 RIKDKEGNMFREFKPADYADTIAEHVKPYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADK 300 Query: 420 ----------RVKETFDS------------LAMLE-----FALDNMPDTPLLTEGFS--- 449 KE ++ ++E + + L E F Sbjct: 301 MPDAAPKAQEHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALEGDLSGEKFPDSL 360 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML---------R 500 + +G VEAPRG H +N + + AT N P + + Sbjct: 361 ERQAGDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAMEMGIQKVAQDYIKP 420 Query: 501 GNTVSD-----APLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 G V D ++I + DPC SC +R + + Sbjct: 421 GVEVDDKIFNLMEMVIRAYDPCLSCATHTIDSQMRLATLEVYDSE 465 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 189 bits (481), Expect = 2e-46, Method: Composition-based stats. Identities = 66/432 (15%), Positives = 123/432 (28%), Gaps = 80/432 (18%) Query: 179 SDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFL 238 A P + G + + ++ +A ++F R E R Y E + Sbjct: 1 MRATRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGR-AYTEPPDI 59 Query: 239 SDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHF 296 + R+CGIC A+ ++ ++E + V +R ++ E + SH L++ F Sbjct: 60 TARICGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDF 119 Query: 297 VGFDTGFMQF----------FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 +G+D+ +++ T+ ++ G +GG R + + Sbjct: 120 LGYDSALHLAQDQPALVKLGLTLKKAGNTLMTVIGGRAIHPVNARVGGWYRAPRRRDLTE 179 Query: 347 TLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQ----------IARDLRFDHPYA 396 + + + R + A E + Q IA D A Sbjct: 180 LVGQLEQARDIARDTARFTAALDFPEDELHQTFVALHQPGEYPVERGRIASTAGLDIAPA 239 Query: 397 DYGNIPKTLFTFTG---------GDVF-----SRV------------------------- 417 DY G + +R Sbjct: 240 DYDRHFTEEQVPWSNALHSTLAAGGSYLTGPLARFALGAERLAPAARETAAEIGLRPPER 299 Query: 418 ------MVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 +VR E + + + + + G EAPRG H Sbjct: 300 NPYRSIIVRCIEMVHAADEALRIIADYTEPDPSALEAPPR-AGTGYGVTEAPRGLLYHRY 358 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYMLRG-----NTVSD------APLIIGSLDPCYSC 520 + N + + T N + LRG +S+ I + DPC SC Sbjct: 359 TIDHNGTILDAKIVPPTAQNQRPIEEDLRGVVERFMNLSEPELALRCERAIRNYDPCISC 418 Query: 521 TDRVTLVDVRKR 532 + + Sbjct: 419 ATHFLTLHIEHG 430 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 189 bits (480), Expect = 3e-46, Method: Composition-based stats. Identities = 69/425 (16%), Positives = 145/425 (34%), Gaps = 91/425 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G+ + V +I ++++ R E + R + E ++ R+CGIC HS+ Sbjct: 16 VEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIF-EAQHITSRICGICSCGHSL 74 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVG----------FD 300 A + E+ALG+ ++ +R +LL+ E L SH+L++ L +G + Sbjct: 75 ASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHN 134 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + R+++ + ++L+G ++GG + + L+++ MR D++E Sbjct: 135 AVVRRALRMKKLCNDVCDILVGRHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMAE 194 Query: 361 LVEML--LATPNMEQRTQGIGILDRQIAR------------------DLRFD-----HPY 395 + + L P+ + T+ +G++ D R P Sbjct: 195 TLALAKTLQFPDFYRETEYVGLVSDDEEYPLLMGDVGSTDGKRLGKKDYRQATNEFIDPR 254 Query: 396 ADYGNIPKTLFTFTGGDVFSRV-------------------------------MVRVKET 424 + + ++ G +R + +V E Sbjct: 255 SSAKFAKWSRDSYLVG-ALARFNLNSDKLHPTAKAIAEELGLKPICHNPYLNTVAQVVEI 313 Query: 425 FDSLAMLEFALDNMPDTPLLTEG----------FSYKPHAFALGFVEAPRGEDVHWSMLG 474 + ++ + + +G VE PRG H + Sbjct: 314 VHCYEHAIDLIKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTD 373 Query: 475 DNQKLFRWRCRAATYANWPVLRYMLRGNT--VSD---------APLIIGSLDPCYSCTDR 523 N + + C T N + Y + + D +++ + DPC SC+ Sbjct: 374 SNGIIEQANCIIPTNQNIANIEYDMMKLLPEILDQTKEEITLKMEMLVRAYDPCISCSAH 433 Query: 524 VTLVD 528 V Sbjct: 434 YLNVK 438 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 187 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 63/382 (16%), Positives = 136/382 (35%), Gaps = 60/382 (15%) Query: 196 PGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYT 255 G L ++G++ +D F+ + G+E+ + + Y + ++ RVCGICG +H A Sbjct: 12 EGEATLKIEGDKKIDFVQIEFWQYHGIEEYLKNK-NYMDALVINPRVCGICGHSHLHATV 70 Query: 256 NSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQFFRVREKS 313 +E ++ ++A R + +E + +H+ + + + + K Sbjct: 71 KVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSKI 130 Query: 314 MTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD-VSELVEMLLATPNME 372 +L G + GGV D + ++ L++E++ + + E+++ L + ++E Sbjct: 131 SKAIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLE 190 Query: 373 QRTQGIGILDRQIARDLRF------------DHPY--------------ADYGNIPKTL- 405 + + L + I + L + Y A Y N + Sbjct: 191 RFFEN---LPKDIGKSLNKFLVLGESNIFKSNGDYKNVKEERNKSLSKNALYNNEYYEVG 247 Query: 406 ----------------FTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS 449 + +++R+ R+ E L +E L + + Sbjct: 248 PLARMIINKNKNIKKIYDIYSDSIYTRMCARIYEPLLLLDYIEQKLSEVDLCEPSFLKPN 307 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW--------PVLRYMLRG 501 + + A+ VEAPRG +H + N+K+ + T N + L Sbjct: 308 VR-NGKAIVAVEAPRGSLIHEISI-KNEKIDYYNIVVPTQFNLASSTKENPSPAQAALMN 365 Query: 502 NTVSDAPLIIGSLDPCYSCTDR 523 ++ + D C C Sbjct: 366 EDIAYVDSVFRCFDICAVCMSH 387 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 67/407 (16%), Positives = 130/407 (31%), Gaps = 75/407 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + +GE++ D +F R E+L + + ++V R+CG+C A+ + Sbjct: 12 VEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKP-DQVIDTVARICGLCPVAYQL 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCH-FVGFDTGFMQFFRVRE 311 + E+ ++VP+ +R + E + SH ++ F++ R + Sbjct: 71 TAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERESFLELMREKR 130 Query: 312 KSMT-----------MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + + + ELL G +GG + + TL + + Sbjct: 131 ELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENTLAEIESALPFAEK 190 Query: 361 LVEMLLA----------------TPNMEQRTQGIGI--------------------LDRQ 384 +E+ L + T+G + L Sbjct: 191 ALELFLNFDYPEMEKERIFVSLGNHEVYPITEGSAVSSEGMNIEKNEYEEYFVEYQLPHS 250 Query: 385 IARDLR-FDHP----------YADYGNIPKTLFTFTGGDVFSR-----VMVRVKETFDSL 428 A R D Y ++G +P+ L G + +R ++ R+ E +L Sbjct: 251 TALYSRLKDGKAYEVGALARIYNNFGKLPQDLREKVEGVLPARNPFKSIIARIVEVIYAL 310 Query: 429 AMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAAT 488 + L+ E +G EAPRG H + ++ T Sbjct: 311 REAKHILEKFEGGEPHVEYSIR--EGEGVGITEAPRGILYHRYRVNSKGEVVFANIVPPT 368 Query: 489 YANWPVLRYML--------RGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 N + + G+ A ++ + DPC SC V Sbjct: 369 SQNQRAMEEDVLLGLKTLKNGDIRVLAEKLVRNFDPCISCASHFLEV 415 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 186 bits (472), Expect = 2e-45, Method: Composition-based stats. Identities = 69/420 (16%), Positives = 134/420 (31%), Gaps = 81/420 (19%) Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 + G + V+G+ + A R++ R E++ + Y EV ++ R+C IC Sbjct: 7 EHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYY-EVPDITARICSICP 65 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVGFDTGF-- 303 + VA + ++E A+GI V ++ +R + L + +HSH L+L F+G+ Sbjct: 66 DPYQVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKDAIGM 125 Query: 304 --------MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMR 355 +V+ + E++ G + GG + E + K + Sbjct: 126 AAQYPETVKLALKVKRAGNAIKEVITGRTVHGVVTKPGGYTKVPRAEDLERLRKQLESSI 185 Query: 356 ADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFD-----------HPYADYGNIPKT 404 E + + + E + + HP Y ++ Sbjct: 186 DGAREAIRVFSSLKMPEYSLDDNLYIAVDPGEHYGYSGEYLLVSDGTRHPVEKYMDLTNE 245 Query: 405 LFTFTGG-------------DVFSRVM-------------------------------VR 420 + +R++ + Sbjct: 246 VTVEHSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKIDPRNPFSNNMAQ 305 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGF--SYKPHAFALGFVEAPRGEDVHWSMLGDNQK 478 E S+ +D + D + + + VEAPRG H L DN K Sbjct: 306 AIELLYSVQRAMDIIDGLLDEGIKDKLMVEVKPRAGEGIAVVEAPRGLLYHHYKLDDNGK 365 Query: 479 LFRWRCRAATYANWPVLRY----MLRGNT-VSD------APLIIGSLDPCYSCTDRVTLV 527 + T N + +R +SD +++ + DPC SC+ +T + Sbjct: 366 VVFANLVTPTAQNAANMDKYLRIAVRNLKDLSDDELKLKLEMLVRAYDPCISCSVHLTRI 425 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 183 bits (465), Expect = 1e-44, Method: Composition-based stats. Identities = 74/415 (17%), Positives = 134/415 (32%), Gaps = 87/415 (20%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + GE+I D F R +EK+ E + + ++ RVCGICG AH + Sbjct: 8 IEGEAKLNFSFAGEEIDFVDIE-FMTARNIEKILEGKSAL-DALVINPRVCGICGHAHLI 65 Query: 253 AYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV-GFDTGFMQFFRVR 310 A ++E+ IE+ ++A IR + L E + +H L+ + G ++ Sbjct: 66 ATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVLKATYPT 125 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS----------- 359 + + G ++GGV DI + ++ + E Sbjct: 126 QLMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKFFETNLVQADTKDF 185 Query: 360 --------------ELVEML--------LATPNMEQRTQGIGILDR-------------- 383 +L ++L L R G Sbjct: 186 LVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENSYFTKGKSHKTITTHN 245 Query: 384 -------------QIARDLRFDHPYADYGNIPK----------TLFTFTGGDVFSRVMVR 420 +A+++ + Y + G + + G ++FSR++ R Sbjct: 246 ISIDYVKEQDNLNSLAKNVTYKDKYYEVGPLARAMINKVPLVKDSHRRYGDNIFSRIIAR 305 Query: 421 VKETFDSLAMLEFALDNMPDTPLLTEGFSY---KPHAFALGFVEAPRGEDVHWSMLGDNQ 477 V E L + L+ + + + + +A VEA RG +H L +N Sbjct: 306 VCEIPQLLNHSKELLEKLDLSEPSYIEPNIDISQINASGESAVEAARGSLIHKVEL-ENG 364 Query: 478 KLFRWRCRAATYA--------NWPVLRYMLRGNT-VSDAPLIIGSLDPCYSCTDR 523 + + T N V + + G V A L+ + D C CT Sbjct: 365 IIKNYEIITPTQWNLGNGTRENLGVSQQAMVGLKDVKTAELVFKTFDVCSVCTTH 419 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 183 bits (464), Expect = 2e-44, Method: Composition-based stats. Identities = 69/400 (17%), Positives = 126/400 (31%), Gaps = 74/400 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + D + I D LF +RG+E++ R + + ++ R+CGICG AH Sbjct: 9 IEGEAFLEFQKDKQTITDVKV-LFPHYRGIEEILRGRDPW-DALVINPRICGICGHAHLQ 66 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL-SCHFVGFDTGFMQFFRVRE 311 A +E+ + + Q+A IR I E + +H+ L H + F + + Sbjct: 67 ATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIFHELNIPYDFTKVHHLIV 126 Query: 312 KSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLA---- 367 + L G ++GGV D + Q L++++R +L+ L Sbjct: 127 TINKLLALFSGQWPHSSYCVVGGVTCDPTSLEIHQAKTLIQQIRDQFIQLIGKLHDPLNL 186 Query: 368 -------TPNME-----------QRTQGIGILDR----------------------QIAR 387 ++ R + R Sbjct: 187 TNDLQKLYRTLQEKELLLVGKSHDRFITFSQDSHVSNIKLLHGQKRKTKLTLIEENEQKR 246 Query: 388 DLRFDHPY-ADYGNIPKTLFTFTGGDVFSRVMVR----------VKETFDSLAMLEFALD 436 + Y Y D F R R + ++ ++E +D Sbjct: 247 SYAKNVTYNGKYYETGPLARLMQQTDPFVRYFHRRFKDSITTRIIARIYEVSLLIEKIID 306 Query: 437 NMPDTPLLTEGFS--YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-- 492 ++ L A+ +EA RG +H + + K+ + T N Sbjct: 307 HLATIDLSQPSVVESKMQDGTAIISIEAARGSLIHQATIH-QGKIETYNFITPTQWNLSN 365 Query: 493 ------PVLRYMLRGN---TVSDAPLIIGSLDPCYSCTDR 523 V++ + G +++ LI S D C CT Sbjct: 366 GTSQNPSVIQKAIVGTSDEKIAN--LIFRSFDICSVCTTH 403 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 182 bits (462), Expect = 3e-44, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 132/419 (31%), Gaps = 83/419 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + + + + ++ R E R Y E ++ RVCGIC A+ V Sbjct: 16 VEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGR-AYTEPPDITARVCGICPVAYQV 74 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGFMQFFRVR 310 + N++E+A G+ + +R +L E +HSH L++ L F+G+ R Sbjct: 75 SACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKDHR 134 Query: 311 EKS----------MTMAELLIGSRKTYGLNLIGGVRRDILKEQR----LQTLKLVREMRA 356 E + E + G +GG +++ + + + + Sbjct: 135 EFLERGLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDALF 194 Query: 357 DVSELVEMLLATPNMEQRTQGIGILDR------QIARDLRFDHPYADYGNIPKTLFT--- 407 + + E + + DR I R P AD+ + + Sbjct: 195 TLRSVAEFDFPDVEFDHEFLALTQPDRYAIEDGAIVRSAGPAFPVADFSEHVREMQVPHS 254 Query: 408 ----------FTGGDVFSRV-------------------------------MVRVKETFD 426 +R +VR E Sbjct: 255 TALHATLDGERYLTGPLARYSLSSAALSPTARQAAAQAGLGAQCRNPFRSIVVRAVEVVY 314 Query: 427 SLAMLEFALDNMPDTPLLTEGFSYKP--HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 + +E AL + D F P G EAPRG H +GD+ + Sbjct: 315 A---IEEALRIIEDYERPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVSAATM 371 Query: 485 RAATYANWPVLRY----MLRGNT-VSDAPLI------IGSLDPCYSCTDRVTLVDVRKR 532 T N + Y ++ GN + DA L I + DPC SC+ + V + Sbjct: 372 VPPTAQNQAAIEYEMGRLVAGNLTLDDAELTSLCERSIRNHDPCISCSAHFLTLTVERG 430 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 180 bits (458), Expect = 9e-44, Method: Composition-based stats. Identities = 73/417 (17%), Positives = 130/417 (31%), Gaps = 83/417 (19%) Query: 189 LHITSDEPGHFRLFVD--GEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 +H + GH + + ++V+A + + R E + + M + FL+ R+CGIC Sbjct: 11 IHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKG-MSAEQAPFLTSRICGIC 69 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVG------ 298 +HS+A ++E A+ I P A +R + + E L SH L+L F G Sbjct: 70 SISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVLP 129 Query: 299 ----FDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 +++E +++ G ++GG+ + +Q + L + +E Sbjct: 130 LMESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQLKELLTMTQER 189 Query: 355 RADVSELVEMLLATPN--------MEQRTQGIGI--LDRQIARDLRFDHPYADY----GN 400 + +++ V G+ + Q+ DY Sbjct: 190 KLALAQAVTFFEELHIPNFTRETEFISLCNGVTYPAIGGQLVSSDGITRDENDYLLMTNE 249 Query: 401 IPKTLFTFTG---------GDVFSRV-------------------------------MVR 420 + T +R + + Sbjct: 250 YTRDFSTSKFTRLSRNSSAAGALARFNNNYHLLHPNAQAVAARFGLQPVCHNPFMNNIAQ 309 Query: 421 VKETFDSLAMLEFALDN-MPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 + E L E + M T+ A G VEAPRG H+ D + Sbjct: 310 LVECVHILEDAEELIGMVMDMKGEETKCHYTPQAGAATGAVEAPRGILYHYMETNDEGMV 369 Query: 480 FRWRCRAATYAN-------WPVL------RYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 R C T N L G +++ S DPC SC+ Sbjct: 370 VRADCIIPTTQNNGNIYDDLQALAAELLREGKCDGEIQLQCEMLVRSYDPCISCSVH 426 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 67/410 (16%), Positives = 131/410 (31%), Gaps = 79/410 (19%) Query: 199 FRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSV 258 + + I +F R + R Y E+ ++ R+CGIC ++ + N++ Sbjct: 20 LDVNLVNGTIESLKLNVFEPPRFFQNFLVGRK-YRELPDITARICGICPVSYQMTSINAI 78 Query: 259 ENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVGFDTGFMQ----------F 306 E+A +EV ++ +R + + + SH+L++ + F+G+++ Sbjct: 79 EHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLGYESVISMAEDFPDEVKLA 138 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEML- 365 ++ + L+ G +GG +E Q + + +++ Sbjct: 139 LDLKRLGNDITALIGGREVHPVTPRVGGFSDLPSQEALKQAAERLEAALEGGMAAAKLVG 198 Query: 366 -LATPNMEQRTQGIGILDR--------QIARDLRFDHPYADYGNIPKTLFTFT------- 409 L+ P+M + + D+ ++ D D ADY Sbjct: 199 GLSVPDMSWDFTSVALSDKKEYAVNGGRLVSDNGLDIDPADYREFLHEAHVSPSHALHSS 258 Query: 410 -GGDVF-----SRVM-------------------------------VRVKETFDSLAMLE 432 G+ F +RV RV E S+ Sbjct: 259 LSGNSFLVGPLARVNLNFDRLSGKAKEAAALTGVSFPSKNPFHSVDARVAELVHSIEESL 318 Query: 433 FALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 +D + P+ + EAPRG H + + A T N Sbjct: 319 EIIDAL-GKPVPEKNGYIVRPGCGAAITEAPRGILSHSYCFNELGVVEEADIVAPTSRNV 377 Query: 493 PVLRYMLRGNT-----VSDAPLI------IGSLDPCYSCTDRVTLVDVRK 531 + LR +SD L I + DPC+SC+ + + + Sbjct: 378 KNMEEGLRRFIPEHLDLSDEELTLKCEMYIRNYDPCFSCSVHFLKLRINR 427 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 180 bits (457), Expect = 1e-43, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 131/415 (31%), Gaps = 89/415 (21%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + +I D F R +E + + + + + ++ RVCGICG AH + Sbjct: 8 IEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAF-DALVINPRVCGICGHAHLM 65 Query: 253 AYTNSVENAL-GIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV-GFDTGFMQFFRVR 310 A ++E+ + + +A IR + L E + +H L+ + + G ++ Sbjct: 66 ATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQILKATYPS 125 Query: 311 EKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVS----------- 359 + ++ G ++GGV +I + ++ + + V Sbjct: 126 QLMSKAIAVIGGQYPHTSYAIVGGVACEITEIDLIKVQHYIAQTLKFVEQNLLKVESEVF 185 Query: 360 ---------------ELVEMLLATPNM-----EQRTQGIG-------------------- 379 E+++ + + + R G Sbjct: 186 LKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKSVKTKVTHNIS 245 Query: 380 -------ILDRQIARDLRFDHPYADYGNIPK----------TLFTFTGGDVFSRVMVRVK 422 + A+++ F Y + G + + + G +FSR++ R+ Sbjct: 246 LVDVKESQITSSFAKNVSFKDKYYEVGPLSRAMINKTPLIIDVHKKYGDSIFSRILARIY 305 Query: 423 ETFDSLAMLEFALDNMPDTPLLTEGFSY---KPHAFALGFVEAPRGEDVHWSMLGDNQKL 479 E L + + + S K VEA RG +H L ++ + Sbjct: 306 EISQLLEHSRGLIKKIDLSQPSYIEPSIDISKLSGSGYSAVEAARGTLIHRVEL-ESGII 364 Query: 480 FRWRCRAATYANWP--------VLRYMLRGNTVSDA---PLIIGSLDPCYSCTDR 523 + T N V + + G +SD L+ S D C CT Sbjct: 365 KNYEIITPTQWNLSGGTRENHGVSQRAMVG--LSDVKIAELVFKSFDVCSVCTTH 417 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 87/413 (21%), Positives = 147/413 (35%), Gaps = 82/413 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVH---RGMEKLAETRMGYNEVTFLSDRVCGICGFA 249 + GH L ++ E + +F VH R E + Y + L+ R+CGIC A Sbjct: 12 TKIEGHANLTIEIED-ENLKRVIFGVHEGSRYFEAFMVGK-SYKYLPELAGRICGICTVA 69 Query: 250 HSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFV------------ 297 H +A +VE+ALGIE+ + +R ++L + SH+L+L Sbjct: 70 HEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVESIIELAN 129 Query: 298 GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRAD 357 + F ++E S M EL+ G + G V + I KE + +K ++E+ Sbjct: 130 KNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKMKEIYPF 189 Query: 358 VSELVEML--LATPNMEQRTQGIGILD--------RQIARDLRFDHPYADYGNIPKTLFT 407 + + E+ L P E+ ++ + + D +IA P+ Y + Sbjct: 190 LLDTAELFLSLEYPKYERESEYVALWDGHSIPLYKGEIATLSSIFDPH-QYQEHIREWVV 248 Query: 408 FTGG---------DVFSRVMVRV-------KETFDSLAM--------------LEFALDN 437 D + R+ +E + L AL+N Sbjct: 249 EYSSAKHSLIEGRDYMVGALARLNINRNLREEARELAERYGVRFPSNRIAWINLAQALEN 308 Query: 438 ----MPDTPLLTEGFSYKP--------HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCR 485 + + Y P +G +EAPRG +H + N K Sbjct: 309 VHFALEAMEIAENLKEYDPHKINIPRVSGEGVGVIEAPRGLLIHHYKI-KNGKCTYVNII 367 Query: 486 AATYANWPVLRYMLRGNTVS-----------DAPLIIGSLDPCYSCTDRVTLV 527 T N + +L+G +A II + DPC SC+ VT + Sbjct: 368 TPTAMNTENIERILKGYISQIVSKNDEYIKMEAEKIIRAYDPCISCSVHVTRI 420 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 59/422 (13%), Positives = 119/422 (28%), Gaps = 82/422 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G LF + + D +F R +E + + + Y + ++ R+CGIC A+ + Sbjct: 11 VEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYR-IIDVTSRICGICPVAYQI 69 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLN--LGLSCHFVGFDTGFMQFFRVR 310 + ++E+A G++V +R + E + SH ++ F+ + F Sbjct: 70 SGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVFEVGKDSP 129 Query: 311 EKSM----------TMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR-------E 353 E + + + G +GG + + + L+ Sbjct: 130 EFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPLLEKALDLSVY 189 Query: 354 MRADVSELVEMLLATPNM---------EQRTQGIGILDRQIARDLRFDHPYADYGNIPKT 404 SE E+ G + L + Sbjct: 190 ALKRFSEFN--FPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDNVIKEYQVD 247 Query: 405 LFTFTGGDVFSR-----------------------------------------VMVRVKE 423 T ++ R +++R+ E Sbjct: 248 HSTAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDIDLYPPIKNSFKTILIRMVE 307 Query: 424 TFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWR 483 SL + + L ++ K G EAPRG H K+ + Sbjct: 308 IIHSLERSIDLIKDYRKESLKNADYTVK-EGTGYGVSEAPRGILWHKYSFDSEGKIKKAD 366 Query: 484 CRAATYANWPVLRYMLRGN---------TVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQS 534 T N ++ +R + +I + DPC SC + + + Sbjct: 367 IVPPTSQNQDIMEVSVRNMIMNRENIEEILKTGEKVIRNFDPCISCATHFLKIGEIRGKK 426 Query: 535 KT 536 + Sbjct: 427 IS 428 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 178 bits (452), Expect = 5e-43, Method: Composition-based stats. Identities = 79/420 (18%), Positives = 127/420 (30%), Gaps = 80/420 (19%) Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 + G L V +I R+F R EK E R Y E+ + R+CGIC A+ Sbjct: 15 ARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGRE-YQEIPDMVARICGICPVAY 73 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVGFDTG------ 302 ++ +++E G +R + E + SH L++ L F+G+ + Sbjct: 74 QMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSASEMARA 133 Query: 303 ----FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVRE----- 353 + ++ + G +GG R + + + VR Sbjct: 134 HPDIVRRGLALQALGNEIIRFFGGRSVHPVGARVGGFHRAPSRAEAAVLREQVRAALPGA 193 Query: 354 -----------MRADVSELVEMLLAT----PNMEQRTQGIGILDRQIA---RDLRFDHP- 394 + D + V + L P E R LD IA R Sbjct: 194 EALVAWTAALNLPDDPQDFVSVALRHPDEYPMNEGRIVSSDGLDIPIADYESHFREHQEP 253 Query: 395 -----YADYGNIPKTL-FTFTGGDVFSRV------------------------MVRVKET 424 YA P + R+ + R E Sbjct: 254 HSTALYAALDGRPYLVGPLARLNLNLDRLHMPVREALGRTGIAFPSRNMFHSIVARAAEI 313 Query: 425 FDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRC 484 +L L++ + P + G EAPRG H L ++ R Sbjct: 314 HYALLETSRLLEDYTE-PEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHARI 372 Query: 485 RAATYANWPVLRYMLR-----------GNTV-SDAPLIIGSLDPCYSCTDRVTLVDVRKR 532 T N + LR G T+ A ++I + DPC SC V + +R Sbjct: 373 VPPTSQNQARMEADLRHSLETLGLDRDGETLRQQAEMVIRNYDPCISCATHFLKVRLERR 432 >UniRef50_B5I9E7 Ni Fe-hydrogenase III large subunit-like protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5I9E7_9EURY Length = 412 Score = 177 bits (449), Expect = 1e-42, Method: Composition-based stats. Identities = 76/417 (18%), Positives = 140/417 (33%), Gaps = 41/417 (9%) Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPV 186 ++P R + + E H L ++ + P + + E +V+ Sbjct: 18 ILPENN-GYRFIWTNYENGEIKHTLWENIPEGFYERRPLARAFMNNYEIEAKDCGKVLTY 76 Query: 187 GPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 GP E G F++ GE+I L + R M A + + E +R+ G Sbjct: 77 GPAAGGLGEAGAFKIATCGERIDSLVPYLGFKKREMLNKAIGKEPW-EALPYVERITGQF 135 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQF 306 +++ + V GI+ P E+ER+H+H+ + M Sbjct: 136 SISYASLFYGLV---FGIDCPDYLLF----AKELERVHNHIWVMHKLAGDASQKVANMHL 188 Query: 307 FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLL 366 + E+ + + +G R G + + + + E++ E E L Sbjct: 189 AAITEEFLRLNLKTLGHRYGMNFLRTG-------PRKYDKFHENLSELKKWFLETAEELS 241 Query: 367 ATPNMEQRTQGIGILDR----------------QIARDLRFDH-PYADYGNIPKTLFTFT 409 + R Q IL + + RD R YG + + Sbjct: 242 DSRIFIDRLQTTCILKKLDILRNDGVGIPARASGVLRDARKIGIFKDLYG--DYSPPMES 299 Query: 410 GGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPRGEDVH 469 GD SR ++RVKE S +LE + + + F G EAP G+ ++ Sbjct: 300 YGDSLSRFLIRVKEVEKSFEILESI--ELKECKVKRNAKK---DGFYEGMAEAPPGD-IY 353 Query: 470 WSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTL 526 + + ++ R + + +RGN +D P + S +S D Sbjct: 354 MGVKIEKGRVREIIIRPPSLVMYHAFSVGIRGNVFTDFPFALDSFGAYFSDADIFGR 410 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 69/442 (15%), Positives = 133/442 (30%), Gaps = 106/442 (23%) Query: 188 PLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 +H + GH + V D ++ DA + + RG EK E E ++ R+CG Sbjct: 5 TIHPITRIEGHASVTVQLDDKGEVADAHFHATEL-RGFEKFLEG-AAIEEAPRITPRICG 62 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF---VGFDT 301 IC H +A +V+ G +P+ A+ +R +L+ + + SH L+L + + T Sbjct: 63 ICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYLLEGAT 122 Query: 302 GFMQ---------------FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQ 346 + R+ + E G + GG+ + +++R + Sbjct: 123 PATRNVAGLAKANPDLARMAIEARKIGQRITEEAGGKPIHPVSAIPGGMSFSLTEQKRAE 182 Query: 347 TLKLVREMRA-----------DVSELVEMLLATPNMEQRTQGI----------------- 378 + + + + ++ G+ Sbjct: 183 LEAYAKRSLEIAVAAWNLVNGEFDRKADFVKTLGVVQTDFIGMTSGGKFETYDGPIRMMD 242 Query: 379 ---GILDRQIARDL--RFDHPYADYGNIPKTLFTFTGG----DVFSRV------------ 417 G L A+D + Y + T G +RV Sbjct: 243 ANGGSLGEFQAKDYSSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVADSMGYPEAD 302 Query: 418 ---------------------MVRVKETFDSLAMLEFALDNMPDTPL-LTEGFSYKPHAF 455 + R+ E + L + T + + + Sbjct: 303 KMLAEFRAKYGRAPQQPALYNLARIIEVAAASERALALLQDRAITDKNVRNPVAGIKNTR 362 Query: 456 ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR--------YMLRG----NT 503 +G VEA RG +H + D + AT N + + G T Sbjct: 363 GVGIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAIDRGVFETAKKYIHGDADEAT 422 Query: 504 VSDAPLIIGSLDPCYSCTDRVT 525 ++ +++ + DPC SC Sbjct: 423 LNKIEMLVRAYDPCVSCATHAI 444 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats. Identities = 77/407 (18%), Positives = 126/407 (30%), Gaps = 74/407 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + ++ ++ D ++F R E L R Y +V L R+C IC +HSV Sbjct: 12 VEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRH-YWDVPDLEARICAICYLSHSV 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGFMQFFRVR 310 A +E ALG+ VP+ +R + L E + SH L+L L G+ + Sbjct: 71 ASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIRMASKHG 130 Query: 311 EKSMT----------MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 E + ELL G GG R E+ Q + Sbjct: 131 EVVKEGITIKAFGNYIRELLGGREIHGINIKPGGFGRYPTIEELEQIESQCEALLRPARR 190 Query: 361 LVEMLLATP----NMEQRTQGIGIL--DRQIARDLRFDH----------PYADYGNIPKT 404 +V + ++ L D+ IA D PY+ Sbjct: 191 VVNIFAEQEPLGATVQHYIATNEYLYGDKLIAEDGEKFDYLEHIEEKTLPYSFAKQSRYK 250 Query: 405 LFTFTGGDVFSRV-------------------------------MVRVKETFDSLAMLEF 433 F G RV + + E +L + Sbjct: 251 GNIFMVG-ALPRVMLKHDMLTPMAKHFYEEHKEKLASGYVSFNNLAQAIELLYALEKAKE 309 Query: 434 ALDNMPDTPLLTEGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW 492 + D + E +P +G+VEAPRG VH + + + T N Sbjct: 310 VAKTLLDKGIEGENVPIEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNH 369 Query: 493 PVLRYML------------RGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 ++ L + + + DPC SC+ + + Sbjct: 370 GIMELSLYEEARKRYGSSDETTFLQKLEETVRAFDPCISCSVHIVRL 416 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 77/466 (16%), Positives = 143/466 (30%), Gaps = 116/466 (24%) Query: 188 PLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 +H S GH + + D ++ DA + + RG EK E E ++ R+CG Sbjct: 5 TIHPLSRIEGHASVTINLDDKGEVADAHFHATEL-RGFEKFLEG-AAVEEAPRITPRICG 62 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL-------GLSCHF- 296 IC H +A +V+ G +VP+ A +R +L + +HSH L+L + Sbjct: 63 ICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYILGPDY 122 Query: 297 -------VGF----DTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 VG R+ + E G + GG+ + E+R Sbjct: 123 NPALRNVVGLVQANPELAKMAIEGRKIGQRITEETGGKPIHPVSAVPGGMSFALANEKRA 182 Query: 346 QTLKLVRE-----------MRADVSELVEMLLATPNMEQRTQGIGILDRQIARD--LR-- 390 + + + + + + +++ + ++ G+ + D +R Sbjct: 183 ELEAMAKRSVEIARISWPVVMKMMDKYADLVNSVGLVQSDFVGLTRNGKLEFYDGNVRAI 242 Query: 391 -------FDHP---YADYGNIPKTLFTF------TGGDVFSR------------------ 416 D P Y Y +++ G+ F R Sbjct: 243 DSGGVQLADFPGKDYLSYIEETAEPYSYMKFTKLKKGNGFYRVGPLARVNIVDSIGTPEA 302 Query: 417 ---------------------VMVRVKETFDSLAMLEFALDNMPDTPLLTEG-FSYKPHA 454 R E + L + T + + Sbjct: 303 DKMLAEFRAKYGRVPQQSLLYHAARTIEYMAASETALSLLQDSAITDKNVRTAVTGVKNT 362 Query: 455 FALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLR--------YMLRGNTVSD 506 +G VEA RG +H + D + + AT N + ++ G+ VS+ Sbjct: 363 RGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQSSQKLIHGDNVSE 422 Query: 507 -----APLIIGSLDPCYSCTDRVT--------LVDVRKRQSKTVPY 539 +++ + DPC SC +VD + V Sbjct: 423 GTLNRIEMVVRAYDPCVSCATHAIGRMPVQLTVVDSEGNVIREVTK 468 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/427 (16%), Positives = 140/427 (32%), Gaps = 87/427 (20%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + + ++ ++++ R E + R + E ++ R+C IC +H++ Sbjct: 15 VEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGR-SFEESHHVTSRICAICSVSHTI 73 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG--LSCHFVGFDTGFMQF---- 306 A + E ALG+ V ++ +R + L E L SH+L+LG VG + Sbjct: 74 ASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLADTHE 133 Query: 307 ------FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + + E++ G + GG+ + + + L + V+E Sbjct: 134 DELETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVNSWDAVAE 193 Query: 361 LVEML----LATPNMEQRTQGIGILDRQI---------ARDLRFDHPYADYGNIPKTLFT 407 L ++L P E+ T+ I + + + D+ P +DY ++ Sbjct: 194 LADLLAVLADEFPAFERETEYISLTHPEEYAFAEGTIYSSDVGE-IPVSDYRDVANEYVV 252 Query: 408 FTGGDVFSRV--------------------MVRVKETF---------------------- 425 F+R R E Sbjct: 253 EHSTAKFARHERESYMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPYLNNVAQLVE 312 Query: 426 ------DSLAMLEFALDNMPDTPLLTEGFSYKP-HAFALGFVEAPRGEDVHWSMLGDNQK 478 +S+ ++E LD+ P +G +E PRG H D + Sbjct: 313 VAHLLGESVRLIEALLDDGLTPQSNYHVPEIDPTAGQGIGAIEVPRGVLFHEYAYDDTGE 372 Query: 479 LFRWRCRAATYANWPVLRYMLRGN--TVSD---------APLIIGSLDPCYSCTDRVTLV 527 + C T N ++ + T+ D +++ + DPC SC+ V Sbjct: 373 VTEANCVIPTNQNHGNIQRDMETLVPTIVDHPEDEIKHSLEMLVRAYDPCISCSTHYLDV 432 Query: 528 DVRKRQS 534 + + Sbjct: 433 EFAGGEG 439 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 175 bits (443), Expect = 4e-42, Method: Composition-based stats. Identities = 74/467 (15%), Positives = 134/467 (28%), Gaps = 119/467 (25%) Query: 189 LHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 + + GH ++ V + + D + RG EK + R EV + R+CGI Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVME-FRGFEKFLQGR-PAEEVPRIVPRICGI 58 Query: 246 CGFAHSVAYTNSVENALGI---EVPQRAHTIRSILLEVERLHSHLLNLGLSCHF------ 296 C H +A +V+ G ++ A+ +R ++ +HSH L+ Sbjct: 59 CDVQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLVVPN 118 Query: 297 ------------VGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 +Q ++R + + G + GG+ ++ +E + Sbjct: 119 GTRKTRNVFQIIQDMPEVALQAIKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQ 178 Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQ------------RTQGIGILDRQIARD---- 388 L +E +E+ + P +E+ T+ GI+ + D Sbjct: 179 ADLLAKAKENVELAQATIELAV--PILEEKIDLVKTLGYFGDTRHCGIVTKDGDWDVYNG 236 Query: 389 -LRFDHP----YADYGNIPKTLFTFTG--------------------------------- 410 +R Y +Y N+ Sbjct: 237 KVRIKDKDGSIYTEYRNLEYKDIVAEHVKPYSWLKFPYIKELGYPEGIYRVAPLSRINVC 296 Query: 411 --------------GDVFSRV-------MVRVKETFDSLAMLEFALDNMPDTPLLTEGFS 449 D R + + LA E A+D + + Sbjct: 297 DKMPDAAPLAQGALEDFRDRFGYAQYPLLFHWARLIELLASAEMAVDALEQDLSGDKFPD 356 Query: 450 YKPHAFALGF--VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML-------- 499 G VEA RG +H D + + AT N P + + Sbjct: 357 ALERTAGEGAGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAMEMGIQQVAKDYI 416 Query: 500 -RGNTVSD-----APLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYK 540 G V D ++I + DPC SC +R + + Sbjct: 417 KPGVEVDDKIFNLMEMVIRAHDPCLSCATHTMDSQMRLATVEVYDSE 463 >UniRef50_C4PZT7 NADH-ubiquinone oxidoreductase fe-s protein 2 (Ndufs2), putative n=1 Tax=Schistosoma mansoni RepID=C4PZT7_SCHMA Length = 538 Score = 175 bits (443), Expect = 5e-42, Method: Composition-based stats. Identities = 46/244 (18%), Positives = 86/244 (35%), Gaps = 53/244 (21%) Query: 313 SMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNME 372 + + L G + IG +L + ++ +++ ++L P Sbjct: 91 VLRLIMELDGEKIIRLDPHIG-----LLHRGTEKLIEY-----KTYTQISDLLFDNPIWI 140 Query: 373 QRTQGIGILDRQIA----------------RDLRFDHPYADYGNIPKTLFTFTGGDVFSR 416 RT+ +GI+ + A DLR PY Y ++ + GD + R Sbjct: 141 TRTKDVGIVSAEDALDLGFSGVMLRGSGIKWDLRKTQPYDAYEDMDFDVPVGVHGDCYDR 200 Query: 417 VMVRVKETFDSLAMLEFALDNMPDTPLLTEGFS--------------------------- 449 +VR++E SL ++E L+ MP + + Sbjct: 201 FIVRMEEMRQSLRIMEQCLNKMPKGEIKVDDAKICPPKRAEMKSSMEALIHHFKLFSEGY 260 Query: 450 YKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPL 509 P VEAP+GE + + K +R + +A +A+ + + RG + D Sbjct: 261 LVPPGSTYTAVEAPKGEFGVYLVSDGTNKPYRCKIKAPGFAHMAAIDKLCRGFMLPDVVA 320 Query: 510 IIGS 513 +I S Sbjct: 321 VIVS 324 Score = 61.6 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 2/97 (2%) Query: 137 RLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEP 196 R V + +++ + + E S + GP H + Sbjct: 34 RWVPDKKFMDELKESLYNPAVVKANTTVQPIDFFNVSHQEVQSVH--LNFGPQHPAAHGV 91 Query: 197 GHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYN 233 + +DGE+I+ D + +HRG EKL E + Sbjct: 92 LRLIMELDGEKIIRLDPHIGLLHRGTEKLIEYKTYTQ 128 >UniRef50_D1ICJ9 Whole genome shotgun sequence of line PN40024, scaffold_246.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1ICJ9_VITVI Length = 765 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 90/239 (37%), Gaps = 24/239 (10%) Query: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303 + A A++++VE L EVP RA IR + E+ R+ +H L L VG T Sbjct: 51 YVSTMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPS 110 Query: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKE------------------QRL 345 + REK + E + G+R GGV +D+ + Sbjct: 111 LWASEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCHVTCTELVADWAFSLIKAD 170 Query: 346 QTLKLVREMR--ADVSELVEMLLATPNMEQRT----QGIGILDRQIARDLRFDHPYADYG 399 L+ + R + L + ++R G L ++ D R PY + Sbjct: 171 PLAFLLSKSRSNRACPSPYPLCLGAGSAQERPVLWWYGRHGLRERVCWDSRRAAPYDVHD 230 Query: 400 NIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALG 458 + T GD + R +R++E S+ ++ + MP + + P + +LG Sbjct: 231 QSDPDVPVGTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKADDRKLCPPSRSLG 289 Score = 77.3 bits (189), Expect = 1e-12, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%) Query: 451 KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510 P VEAP+GE + + + + +R + RA A+ L M + + +D I Sbjct: 693 VPAPSTYTAVEAPKGEIGVFLVSNGSNRPYRRKIRAPGSAHSQGLDSMSKHHMPADVVTI 752 Query: 511 IGSLDPCYSCTDR 523 IG+ D DR Sbjct: 753 IGTQDIVSGEVDR 765 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 71/431 (16%), Positives = 126/431 (29%), Gaps = 106/431 (24%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + +L +I A L +R + + + Y + L RVCGICG AH + Sbjct: 11 LEGEVELKLEYSKGKIAKAHI-LGTSNRDFSSILKAK-PYLDSIILIPRVCGICGHAHLM 68 Query: 253 AYTNSVENALGIEVPQ-----RAHTIRSILLEVERLHSHLLNLGLSC------------H 295 A ++E+A E +A +R I L E + +H+ Sbjct: 69 ASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFYAYFMSEIPKLDRNMVD 128 Query: 296 FVGFD-TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREM 354 ++ FD + + + + + L G + GG+ D + +E+ Sbjct: 129 YLPFDGEKWRRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSFCKEL 188 Query: 355 RADVS----------------------------ELVEM-----LLATPNMEQRTQGIGIL 381 + + + + +R G + Sbjct: 189 LKSIETYIIGISIDKYLSFSKDELLNHKEGDIGDFIRLSSTFDFFHKGIAYKRFLTGGSI 248 Query: 382 DR-----------QIARDLR------------FDHPYADYGNIPKTLF------------ 406 + + D++ + A Y Sbjct: 249 KGYVDAAVFENGIKESFDVKNIDTKEHEFKKIKEITGAVYNKKRFETGPLARKINSSNSL 308 Query: 407 ----TFTGGDV-FSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH--AFALGF 459 GD F RVM RV E +++ ALD + K +G Sbjct: 309 FLELLEEFGDSLFLRVMARVDEIVSLTLLIKDALDAIDIRKPSYIKPPIKEPFTGKGVGI 368 Query: 460 VEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW-------PVLRYMLRGNTVSDAP--LI 510 VEA RG +H + +N + ++ T N + + G + SD L Sbjct: 369 VEAARGTLIHEINI-ENGFVKDYKIVTPTLWNLGNYDEDMSPAQKSIVGLS-SDVEAYLS 426 Query: 511 IGSLDPCYSCT 521 + S D C SC Sbjct: 427 LRSFDVCASCV 437 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 174 bits (440), Expect = 1e-41, Method: Composition-based stats. Identities = 75/477 (15%), Positives = 145/477 (30%), Gaps = 117/477 (24%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNE 234 N++ V + + V+ +++ A V RG E + R + Sbjct: 1 MAENTEKGQKIVINPTTRTLGASQVEVRVEAGRVIHARCGA-TVFRGFELILRDRDP-RD 58 Query: 235 VTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC 294 +++ R+CGIC AH++A + +VE+ G+ P + +R+++ + L +H+ + L Sbjct: 59 AAYITQRICGICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFA 118 Query: 295 HF-----------VGFDT---------------GFMQFFRVREKSMTMAELLIGSRKTYG 328 V T + Q V K+ ++ LL G Sbjct: 119 VPDYVRGPECRPLVPPPTTDYRLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPH 178 Query: 329 LNLIGGVRRDILKEQRLQTLKLVREMRADVSE---------------LVEMLLATPNMEQ 373 + GG + L L +V+ ++ V E E+ + + Sbjct: 179 GIIPGGSSVPVTAITVLNLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGADFLN 238 Query: 374 R-------------TQGIGILDRQI-ARDLRFDHPYADYGNIP------------KTLFT 407 G ++D ++ A D + Y + + Sbjct: 239 FGLFPLDPEASGHHFPGAAVIDGRMEAVDSGEISEHLRYTHFEGEQLAHPARGETRPNPD 298 Query: 408 FTGGDVF---SRVMVRVKE----------------TFDSLAMLEFALDNMPDTPLLTEGF 448 GG + R R E ++ AL + L+ + Sbjct: 299 KPGGYSWCKAPRYRGRALEGGPLAQLWVRGDYRRGVSVMDRLIARALISREVAGLMRKWL 358 Query: 449 SYKPHAF-------------ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP-- 493 + +G A RG HW + + ++ ++ T N+ Sbjct: 359 TALRPGQPVFNRYQVPESGTGVGLTGAMRGGLGHWLEV-EGGRIKHYQIVTPTAWNYSPH 417 Query: 494 -------VLRYMLRGNTVSD------APLIIGSLDPCYSCTDRVTLVDVRKRQSKTV 537 + L G V+D ++ S DPC SC V ++D V Sbjct: 418 DDQGGPGPVEEALIGTPVADAKEPVEIGRVLHSFDPCMSCVAHVIVLDEPVPDRILV 474 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 171 bits (434), Expect = 6e-41, Method: Composition-based stats. Identities = 70/461 (15%), Positives = 141/461 (30%), Gaps = 126/461 (27%) Query: 188 PLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCG 244 + + GH ++ + D + D+ +++ + RG E+ + R E+ ++ ++CG Sbjct: 6 SIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVEL-RGFEQFCQGR-PVEELPRITPKICG 63 Query: 245 ICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC---------- 294 +C AH +A + + + G+ P A IR + HSH+L+ Sbjct: 64 VCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPGPEA 123 Query: 295 -----HFVGFDT-----GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 + +G + + R + + L+ G +L GG+ + ++ R Sbjct: 124 GPGKRNILGLVDELGKGAVRRVLQNRGYAQKIQGLIAGHPIHPVASLPGGMAGPVSEKTR 183 Query: 345 LQTLKLVREMRADVSELVEMLLATPN--------------MEQRTQGIGILDRQI---AR 387 + + E+R + ++ RT +G++D Q Sbjct: 184 QEIAGMASEIR-EFAQFALWFFENHILAQDRNRELLTGELFTHRTHYMGLVDSQGRVNFY 242 Query: 388 D--LRFDHPYAD----------------------YGNIPKTLFTFTGG------------ 411 D LR P + Y P G Sbjct: 243 DGQLRVVTPEGETMAQFDGSDYLEHLAETVLPWSYMKFPYLRDKGWHGLIDGADSGVYRV 302 Query: 412 DVFSRVMV-------RVKETFDSLAM-----------------------LEFALDNMPDT 441 + +R+ V +E ++++ AL ++ Sbjct: 303 NSLARLNVADGMATPLAQEAYETMRAFYGGTPIHNTLAFHWARLVELMQAAEALVDLSQD 362 Query: 442 PLLTEG----FSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRY 497 P +T+ +G VEAPRG +H N + AT N + Sbjct: 363 PEVTDTNVRSLPEGRPGEGVGVVEAPRGSLIHHYTTDANGLVKTVNLIVATVQNNAGMGM 422 Query: 498 MLRGN---TVSD----------APLIIGSLDPCYSCTDRVT 525 ++ + D + + DPC +C Sbjct: 423 SVKKAAQGLIQDGAPDEAVLDMIEMGYRAYDPCLACATHAL 463 >UniRef50_B8GAR8 NADH-ubiquinone oxidoreductase chain 49kDa n=3 Tax=Chloroflexus RepID=B8GAR8_CHLAD Length = 365 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 139/356 (39%), Gaps = 34/356 (9%) Query: 188 PLHI--TSDEPGHFRLFVDGEQIVDADYRLF-----YVHRGMEKLAETRMGYNEVTFLSD 240 LH + L V+GE I D +YR Y R L + + Sbjct: 6 TLHPVAGAWHSEQLTLTVEGEYIRDVEYRPATGDGAYAQR----LLQGGG--ESAVRAAA 59 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFD 300 +VC C AH++A + ++E I P RA IR I+ E+ER SH+ L +G + Sbjct: 60 QVCPYCSVAHTLALSLALEALAEITAPLRAQAIRVIVAELERAASHMNTLAALIAALGLN 119 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + + ++ + ++ L+G GG+ + + T + + E+ + E Sbjct: 120 SA-TRLSQLETRIRSILLALLGHH-EAAYIRPGGLAEPPDEARLADTERAINELLPHMIE 177 Query: 361 LVEMLLATPNMEQRTQGIGILDRQIAR----------------DLRFDHPYADYGNIPKT 404 L E + + R IG+L + AR D R D PYA Y + Sbjct: 178 LAEQTIPRRTLVARMVDIGVLTTEAARQFGLAGPLGRASDITTDQRIDAPYAGYTVLTPA 237 Query: 405 LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPHAFALGFVEAPR 464 L GGDV +R +V + E +SL + L N+P T VEAPR Sbjct: 238 LVVEQGGDVHARAVVLLIEAIESLRLAVRWLHNLPIGETYTAFTLRL--GEGTATVEAPR 295 Query: 465 GEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSC 520 G + Q+L A + + R +L+ V D LI S DPC +C Sbjct: 296 GPLRYTVRSDG-QRLTAVEIGIAPQLDRLLARTLLQNAAVDDTLLIAISTDPCTAC 350 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 170 bits (430), Expect = 1e-40, Method: Composition-based stats. Identities = 81/461 (17%), Positives = 153/461 (33%), Gaps = 113/461 (24%) Query: 175 NEGNSDARVIPVGPLHITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMG 231 ++ + + GH ++FV + + +A + + RG EK+ M Sbjct: 1 MSAQTETPNSRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNEL-RGFEKILVG-ME 58 Query: 232 YNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLG 291 N + ++ R+CG+C AH +A +N++++A G+ P A +R ++ +HSH L+L Sbjct: 59 ANRMPHITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHALSLF 118 Query: 292 LSCHF---VGFD----------------TGFMQFFRVREKSMTMAELLIGSRKTYGLNLI 332 + +G D + R+R + E++ G ++ Sbjct: 119 VLQGPDLVLGLDADPAIRNVVGIVQANPEVAKKALRIRTVGQRLNEIVGGRGTHPVTSVA 178 Query: 333 GGVRRDILKEQRLQTLKLVREMRADVSEL--------VEMLLATPN----MEQRTQGIG- 379 GG+ + E+R LV E + +L V ML P + +G Sbjct: 179 GGITFVLDSEKRAMLQSLVDEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGT 238 Query: 380 ILDRQI--------ARD----LRFDHPYADYGNIPKTLFT---------FTGGDV----- 413 +LD ++ A D + + P DY F G + Sbjct: 239 VLDNRVSLIQGNIRAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVGFKKGGLLHDYR 298 Query: 414 ---FSRV---------------------------------MVRVKETFDSLAMLEFALDN 437 +R+ ++ E ++ + L + Sbjct: 299 VGPLARINAMQQFSTEWANREMEEMLKLGGYPCHITLFQAYAKLVEMIWAIERADDILRD 358 Query: 438 MPDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV--- 494 P T A+G EAPRG +H + ++ + AT N+ + Sbjct: 359 -PAVNGETRVPVKFQGGRAVGHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAIINR 417 Query: 495 -LRYMLRGNTV--SD-------APLIIGSLDPCYSCTDRVT 525 + + + + + SD I DPC SC Sbjct: 418 SIEHAAKSHVIGKSDDQALLNAIEFSIRCYDPCLSCATHAV 458 >UniRef50_Q2W3I6 NADH-quinone oxidoreductase subunit C n=6 Tax=cellular organisms RepID=NUOC_MAGSA Length = 199 Score = 169 bits (428), Expect = 3e-40, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 69/188 (36%), Gaps = 7/188 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDG---WLPVL 63 + + + + P VL E ++++TVK + V+ YL L + Sbjct: 2 TQALKDLGEYIAQALPQDVLGTEVNRCGELSLTVKAASIVKVMTYLKDDAGCLFKQLVDV 61 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D + V Y L + + VK D ++ PSVT +A W ERE+ D Sbjct: 62 CGVDWPGREQRFDVVYHL-LSMKHNQRVRVKVATDEET-AVPSVTGVFSSAGWFEREVWD 119 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 MYG++ PD RR++ D+ + HPLRKD D Sbjct: 120 MYGVLFSDHPDLRRILT--DYGFEGHPLRKDFPLTGYVEMRYDDETKRVVYEPVKLTQDF 177 Query: 184 IPVGPLHI 191 L Sbjct: 178 RSFDFLSP 185 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 169 bits (427), Expect = 3e-40, Method: Composition-based stats. Identities = 66/468 (14%), Positives = 126/468 (26%), Gaps = 121/468 (25%) Query: 188 PLHITSDEPGHFRLFV--DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 + G + + D +IV+A R + RG E + R + +++ R+CGI Sbjct: 6 TFSPVTRLSGLLSVEIVVDRGKIVNARTR-GTMFRGYEWIMRGRK-VTDAVYMTQRICGI 63 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL--SCHFVGFDTG- 302 C AH + ++ G + + A +R+I+ + L +H+ + FV Sbjct: 64 CSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKMPEKP 123 Query: 303 -----------------------FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDI 339 + + + ++S + L G + GGV Sbjct: 124 PFLGQDLNDLRLNREDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHGGVTVAP 183 Query: 340 LKEQRLQTLKLVREMRADVS-----------ELVEMLLATPNMEQRTQGIGILDRQIARD 388 ++ Q L+ ++ V R G+ D Sbjct: 184 TADKINQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGVTPLRLISFGLFPFGPQND 243 Query: 389 ---------------------LRFDHPYADY--------------GNIPKTL-------F 406 + PY+ Y P Sbjct: 244 DYLWPPGVIINNEFELPQVEFIEEQVPYSYYEANDEGENVFNQYPEPAPFKPEAYSYIKT 303 Query: 407 TFTGG-----DVFSRVMVR----------------VKETFDSLAMLEFALDNMPDTPLLT 445 G ++R ++R E + L + P Sbjct: 304 VLYKGQHFETGPYARGVIRGDYRGRASTMDRIVARSLEALKLAGFIREWLTRLEPGPPPL 363 Query: 446 EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP---------VLR 496 A+ A RG +H +++ ++ + T N+ + Sbjct: 364 NQNEEPVKDRAVATTGAMRGALLHSAIIEGE-EVKSYNVITPTTWNFSPRDKNGNPGPVE 422 Query: 497 YMLRGNTVSD-------APLIIGSLDPCYSCTDRVTLVDVRKRQSKTV 537 L G + II S DPC SC V +D + ++ Sbjct: 423 RALIGTEIPGGAMLETIVGRIIRSFDPCISCGTHVYSIDGKLQKKIEF 470 >UniRef50_B5YL31 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL31_THEYD Length = 201 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 5/158 (3%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVL 63 ++ I LK QFP V++ ++ QV++ VK N + ++++YL Q L L Sbjct: 30 RATEESLKIAYKLKEQFPEEVIEI-KEFRGQVSVIVKSNKIKEILKYLKNQQGFNHLQDL 88 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D + + Y L + I V+A V+ ++ E SVT A W ERE D Sbjct: 89 CGVDYSPEKPRFEIVYNL-YSIWRRLHIRVRAKVNEETPELDSVTDLWEGANWHERECFD 147 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLR 161 M+G+ +G PD RR+++P+DW + +PLRKD Sbjct: 148 MFGIRFIGHPDLRRILMPEDW--NGYPLRKDYPLKGKE 183 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 167 bits (422), Expect = 1e-39, Method: Composition-based stats. Identities = 65/427 (15%), Positives = 120/427 (28%), Gaps = 84/427 (19%) Query: 183 VIPVGPLHITSDEPGH--FRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + + + + GH R+F+DG + + L R E L + + E+ + Sbjct: 1 MSNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKH-FREIPDIIC 59 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF---- 296 R+C +C H V +VE A GI V + R +++ + SH L+L Sbjct: 60 RICSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFN 119 Query: 297 -VGFDTGFMQF-------FRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 GF R++ + E + G IGG+ + I L+ Sbjct: 120 AAGFADLAKLAPDLLKLGLRIKAVGNDIQETIGGRLIHPINVKIGGMGQHIASNDLLRLQ 179 Query: 349 KLVREMRADVSELVEML--------------------LATPNMEQRTQGIGILDRQIARD 388 + ++ + +D VE+ P + D Sbjct: 180 QSLKSILSDTIRTVELFSSFATPGPPLPPPVYLAVKDENAPPLFGDMLTTSTGIAVKGSD 239 Query: 389 LRFDHPYADYG-----NIPKTLFTFTGGDVFSR--VMVRVKE------------------ 423 R + G SR + +R+ E Sbjct: 240 YRSALKESVNDHSNGKFSHFDDTNIAVG-ALSRLNMNIRLTEAAGKAFDQAKKKLVNGDM 298 Query: 424 ----TFDSLAMLE------FALDNM--PDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWS 471 ++ ++ +D++ P EAPRG +H Sbjct: 299 WQNNLAQAIELVFAVESAMEIIDSLLQTGHGHSATDGILSPKGEGTAITEAPRGVLIHSY 358 Query: 472 MLGDNQKLFRWRCRAATYANWPVLRYML-------RGNTVSDA----PLIIGSLDPCYSC 520 T N + L G + +++ + DPC SC Sbjct: 359 SFNSRGYCVGADIITPTAINQAAIEQDLLFLARATEGAGEQEMKFKLEMLVRAYDPCISC 418 Query: 521 TDRVTLV 527 + + Sbjct: 419 AVHLISL 425 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 74/458 (16%), Positives = 133/458 (29%), Gaps = 123/458 (26%) Query: 188 PLHITSDEPGHFRLFVDGE--QIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 + + G ++ VD E +IVDA RG EK+ + R ++ L+ R+CGI Sbjct: 5 VIDPVTRISGLLKIEVDVENNKIVDAK-STGSQFRGFEKMFQGRPPL-DIIRLAPRICGI 62 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHL--LNLGLSCHFVGFDTG- 302 C +H++A T ++ENAL I IR I E L +HL FV Sbjct: 63 CSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITASN 122 Query: 303 --------------------------FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGV- 335 +++ + + +L G +GG+ Sbjct: 123 PLYKDGTDKELDYRLPEDITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGIS 182 Query: 336 -RRDILKEQ---------RLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQI 385 D+ +++ + + E +++ G+ Sbjct: 183 TYIDVPEKESVKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGNLMDFGLYSDYK 242 Query: 386 A-----------------RDLRFDHPYADYGNIPKTLFTFTGG------------DVF-- 414 A D+ Y + G D + Sbjct: 243 APIKYTEASAMINGKKENIDVNNITENVKYSYLDIPGGMVMPGVSSTPEPNPYKQDAYSW 302 Query: 415 ---SRV---------MVR-----VKETFDSL--AMLEFALDNMPDTPLLTEGFSYKPHAF 455 +R + R E S +L L+++ + Sbjct: 303 VDAARYKNYSMEGGPLARQILNGYYENKISAMDRILARVLESVKICESIIGLIDLMKLGQ 362 Query: 456 -------------ALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP--------- 493 +G + APRG HW + +N+++ + + N Sbjct: 363 AVQEEWQIPSKVNGIGLIGAPRGALGHWLSI-ENKQVSNYTLIPPSAWNLSPTDSNNIKG 421 Query: 494 VLRYMLRGNTVSDA------PLIIGSLDPCYSCTDRVT 525 + L G ++D I+ S DPC +C VT Sbjct: 422 PVEAALIGTEINDMKNPVEIGRIVRSFDPCSNCAAHVT 459 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 165 bits (419), Expect = 3e-39, Method: Composition-based stats. Identities = 72/441 (16%), Positives = 127/441 (28%), Gaps = 113/441 (25%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + +L ++ DA +RG E+L + + + + + RVCGICG AH + Sbjct: 11 VEGEIELKLLWKSGRVDDAFL-CAMDYRGFERLLKGK-PFLDALVIVPRVCGICGHAHLM 68 Query: 253 AYTNSVENALG-----IEVPQRAHTIRSILLEVERLHSHLLNLGL--SCHFVGFDT---- 301 A ++E+A +++ +A IR + L E L +HL + V + Sbjct: 69 ACVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVKLEPSIAE 128 Query: 302 --------GFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDIL-------KEQRLQ 346 +++ R + + L G + GGV D + + Sbjct: 129 LYEPLRGRAWVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAELFLER 188 Query: 347 TLKL---------------------VREMRADVSELVEMLLAT----------------- 368 ++++R D+ E+ + Sbjct: 189 LKTFFESWLLGMPLEEYLSLKGRNYLKDIRGDLGRFTEVAIEHNLHEEGRSYDRFITGGE 248 Query: 369 --PNMEQRTQGIGILDRQIARDL----------RFDHPY-----ADYGNIPKT------- 404 P + A + R Y A Y +P Sbjct: 249 LKPLFRSGFFTREGVSPFDADKVSENDEFTFFRRNGSAYTWSKAARYSGLPCETGPLARQ 308 Query: 405 ----------LFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH- 453 LF G V RV+ R+ E + L + S Sbjct: 309 LVSGNRVIGSLFRRFGSSVLVRVVARMDEAVRLFTEAQRTLHRIKLDEPSWNRPSVDEKV 368 Query: 454 --AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPV--------LRYMLRGNT 503 +G VEA RG +H + + ++ + T N L G Sbjct: 369 FSGRGVGVVEAARGTLIHELEI-EGGRIRSYNIITPTVWNLGPRDAEHLGVAERALLGLD 427 Query: 504 VS-DAPLIIGSLDPCYSCTDR 523 A +++ S D C CT Sbjct: 428 SELKAEIVVRSFDVCSVCTTH 448 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 64/476 (13%), Positives = 127/476 (26%), Gaps = 142/476 (29%) Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRL-FYVHRGMEKLAETRMGYNEVTFLSDRVCGIC 246 + + GH + E ++ R+ ++RG E++ R + ++ R+CG+C Sbjct: 6 TVDPLTRIEGHMSVETAVESGKVSEVRIAGNMYRGFERMLLGRHPVDSA-RIAQRICGVC 64 Query: 247 GFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHF--------VG 298 H V+ ++E GI P +R ++L + + H+L+ C G Sbjct: 65 HEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLSSAAG 124 Query: 299 FD-----------------TGFMQ-----------------------FFRVREKSMTMAE 318 ++ T FMQ ++R ++ Sbjct: 125 YNGKDRDLRNISDWLSSSGTAFMQNRTEGNYIKDKDSARRFALNYFEAIKIRSQAAGGLA 184 Query: 319 LLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVR---------------EMRADVSELVE 363 +L + GG+ +I + ++ + + E+ E + Sbjct: 185 ILGAKVPFIHALMPGGITTEITTDALMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFD 244 Query: 364 MLLATPNMEQ---------RTQGIGIL------------------------------DRQ 384 + A G++ + + Sbjct: 245 IGEAYNTFYAHQSFNSAKGDLFTQGVIADGEKVDFDYNKVKELIGSSYYKADGSPDENAE 304 Query: 385 IARDLRFDHPY-------------ADYGNIPKTLFTFTGG------DVFSRVMVRVKETF 425 A Y A + G V R++ R E+ Sbjct: 305 GAYSWIKAPRYDGIPLETGPIARAAVGNDEEFKSLLRRLGQKSIKSSVMGRLLARAHESV 364 Query: 426 DSLAMLEFALDNMPDTPLLTEGFSY--KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWR 483 L + +GF A RG VH K+ ++ Sbjct: 365 MLCNYLYGRTEEYVIGKPAIRAVDLQAPVSGEGIGFSVAARGALVHHI-TAYKGKVTDYK 423 Query: 484 CRAATYAN--------WPVLRYMLRGNTVS--------DAPLIIGSLDPCYSCTDR 523 + N V + G V+ + +I S DPC +C+ Sbjct: 424 MIVPSTWNFGPTVDGRLGVAEKAVLGTPVNYGGVSGSIEVGRVIRSFDPCTACSIH 479 >UniRef50_Q1PWG9 NADH-quinone oxidoreductase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWG9_9BACT Length = 166 Score = 164 bits (414), Expect = 1e-38, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 7/157 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD---GWLPVLFGN 66 ++I+ +K+ FP A+ D ++T +K + V ++ + +L + G Sbjct: 3 NDSIITLVKSHFPEAITDCY-DFRGELTFVIKKEHIMQVAEFFKKNEELECDYLSDVCGV 61 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D+ NG + V Y L +K + +K V +D+ +VT A W ERE DM+G Sbjct: 62 DKIETNGVFEVVYHL-YSMQKKHRVRLKVPVPSDNPTISTVTHIWKTANWHERETYDMFG 120 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPE 163 + G PD R++++P+D+ + HPLRKD +P Sbjct: 121 IQFQGHPDLRKILMPEDF--EGHPLRKDYPIDGRQPA 155 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 70/421 (16%), Positives = 131/421 (31%), Gaps = 84/421 (19%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + V+ E I +F R E L + ++ + + RVC IC H++ Sbjct: 12 VEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLA-RDAPGIVCRVCSICSAGHTL 70 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVGFDTGFMQFFRVR 310 A ++E+ALGI V R++L + + SH L+L ++G + Sbjct: 71 ASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNASILQMASHFP 130 Query: 311 EKSMT----------MAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 E+ + E++ G ++GG+ R ++ L+ ++ Sbjct: 131 EQVQKGLEIKRVGNLVQEVVGGRAIHPVNVIVGGLGRRPARQAMQTLLQDLQNALDLALS 190 Query: 361 LV---------EMLLATPNMEQ-RTQG--IGILDRQIARDLRFDHPYA-DYGNIPKTLFT 407 L EM L P + R G G+ +A D P A Y + + + Sbjct: 191 LRGFVASLQNPEMGLQPPILVALRASGARYGLTGTHLAASGHEDIPVAHFYQRVNEKVVR 250 Query: 408 FTGG------------DVFSRVM-----------------------------VRVKETFD 426 + +R++ + E Sbjct: 251 HSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALLPAQPTTLHNNAAQFVELVW 310 Query: 427 SLAMLEFALDNMPDTPLLTEGFSYKP-HAF--ALGFVEAPRGEDVHWSMLGDNQKLFRWR 483 +L + + + P L + L +E PRG H + L + Sbjct: 311 ALEEAVALCEALQEGPALIPPMTTMGFEGEQMGLAALEVPRGTLYHLYGVNGEGVLTQAD 370 Query: 484 CRAATYANWPVLRYML---RGNTVS-----------DAPLIIGSLDPCYSCTDRVTLVDV 529 T N + G + +I + DPC SC+ + + V Sbjct: 371 IITPTAQNLAHVERDFAHGVGYWLEQPQRQQEQLRLYLEMIARAYDPCISCSTHLVDLTV 430 Query: 530 R 530 + Sbjct: 431 Q 431 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 70/406 (17%), Positives = 128/406 (31%), Gaps = 75/406 (18%) Query: 193 SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSV 252 + G + ++ + DA ++ R E L R Y +V L R+C IC +HS+ Sbjct: 14 VEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRH-YMDVPDLEARICAICYASHSI 72 Query: 253 AYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLL--------NLGLSCHFV----GFD 300 A ++ENALGIEV + +R + L E + SH L ++ + + Sbjct: 73 ASVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAISMVSKYG 132 Query: 301 TGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSE 360 + ++ + E + G GG R + + + K R + Sbjct: 133 ELIKEGLTIKALGNMIRETIAGREIHGINVKPGGFGRYPSERELEKIAKHARALVRFARR 192 Query: 361 LVEMLLATP------NMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGG--- 411 +V + + T D IA + R Y D +P Sbjct: 193 IVNIFATQEPRGAKIEVPMVTSEYLWGDELIAGNDRIQ--YEDIEEVPVPYSFAKHSYYK 250 Query: 412 ------DVFSRV-------------------------------MVRVKETFDSLAMLEFA 434 +R+ + + E +L + Sbjct: 251 GKPIFVGALARLLLKGSKLEGEAKRLLDSYKEKIKSGHVIYNNLAQAIELVYALEVASKI 310 Query: 435 LDNMPDTPLLTEGFSYKPH-AFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWP 493 + + + +G+VEAPRG VH + +N+++ T N Sbjct: 311 AEELISEGIEKSTCEPSEKSGEGIGYVEAPRGVLVHHYRI-ENERIVWSNTITPTAFNQG 369 Query: 494 VLRYML------------RGNTVSDAPLIIGSLDPCYSCTDRVTLV 527 ++ L S ++ + DPC SC+ V + Sbjct: 370 MMEKSLLEDARNMFGKESETTLKSKLEEVVRAFDPCISCSVHVVRL 415 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 163 bits (412), Expect = 2e-38, Method: Composition-based stats. Identities = 63/430 (14%), Positives = 130/430 (30%), Gaps = 89/430 (20%) Query: 182 RVIPVGPLHIT-SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSD 240 + HI + G+ + ++ ++ + + R E + R + E+ ++S Sbjct: 2 TKTAIHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRR-FEEIPYISS 60 Query: 241 RVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFVG 298 R+CGIC +H V ++E G+EV R +R +L+ L +H +L + F+G Sbjct: 61 RICGICSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLG 120 Query: 299 FDTG----------FMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 + F Q ++ + + G ++GG +I + L+ Sbjct: 121 MPSVFPLAQTDPELFEQALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLELA 180 Query: 349 KLVREMRADVSELVEMLLATPN------------MEQRTQGIGILDRQIARDLRFDHPYA 396 + E V++ +E + D+ + Sbjct: 181 DKMDAAMDFALEAVDLFRGFEVPDIATAGDMLAMVEDDYYPVECSDQAFFLNAGIVFDAN 240 Query: 397 DYGNIPKTLFTFTGGDVFSRV-----------MVR------------------------- 420 + + + +RV + R Sbjct: 241 EVQEHIEEHAVPHSAALLARVRETQSPYFTGALARVNASWQNLGQNAKVAAAKAGLRPPE 300 Query: 421 ----VKETFDSLAMLE------FALDNMPDTPLLTEGFSYKP----HAFALGFVEAPRGE 466 + ++ +++ + + + P A+GF EAPRG Sbjct: 301 ANPFMNNVAQAVEIVDALDRCADLCRKLAEPGAIASSSLPVPFEVKAGRAVGFTEAPRGA 360 Query: 467 DVHWSMLGDNQKLFRWRCRAATYANWPVLRY---MLRGNTVSD----------APLIIGS 513 H L ++ T N L +L V+D ++ + Sbjct: 361 LFHDLTLDAEGRVTHASILTPTAQNVANLEADMRLLAEKLVADGAAEDVVRLEIEKLVRA 420 Query: 514 LDPCYSCTDR 523 DPC SC+ Sbjct: 421 YDPCLSCSVH 430 >UniRef50_D1CCD3 NADH-quinone oxidoreductase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCD3_THET1 Length = 179 Score = 162 bits (409), Expect = 4e-38, Method: Composition-based stats. Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 7/162 (4%) Query: 2 NVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH---DG 58 + ++ + I+ L+ PGA+ + + TI V ++ L D+ + L Sbjct: 11 DKQGNNEQPLPIINTLQEIIPGAIEEVTV-FRGETTIVVPVDRLIDIARTLRDNPAMQFN 69 Query: 59 WLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGE 118 +L + D + V Y L I +K VD D + PS+T A WGE Sbjct: 70 YLVDVTAVDWLGRTPRFDVVYHL-YSIPLNHAIRMKVRVD-DGQHVPSLTGLWELANWGE 127 Query: 119 REIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL 160 RE DM+G++ G PD RR++LP+DW +D PLRKD Sbjct: 128 RETYDMFGIVFEGHPDLRRILLPEDW-QDGFPLRKDFPIGGY 168 >UniRef50_A7NIW0 NADH-quinone oxidoreductase subunit C n=6 Tax=Chloroflexi (class) RepID=NUOC_ROSCS Length = 174 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 7/174 (4%) Query: 10 GEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH---DGWLPVLFGN 66 +LA L+ P A+L + +++ V+ + DV ++L +L L G Sbjct: 5 NPTVLARLQAALPDALLGSS-EFRGDLSVHVRPERIVDVARFLRDDPELRYHFLENLCGV 63 Query: 67 DERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYG 126 D + V Y L + A + I +K V + PS+T P A + ERE DM+G Sbjct: 64 DYLGREPRFEVVYHL-LSFANRHRICLKVGVSERNPSVPSLTELWPGANYHERETFDMFG 122 Query: 127 LIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 ++ G P R+++P+DW + HPLRKD T + + + Sbjct: 123 IVFTGHPCLDRILMPEDW--EGHPLRKDVPLGAEEVAFTFNQDRIYAHKPFAKE 174 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 133/431 (30%), Gaps = 84/431 (19%) Query: 179 SDARVIPVGPLHIT-SDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTF 237 +P+ HI + G + V + + + + R E + + +E Sbjct: 1 MKNLYLPITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKK-LDEALA 59 Query: 238 LSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGL--SCH 295 + R+C C AH + + E A+G EV + +R +L + + SH L+L L Sbjct: 60 VYPRICSFCSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPD 119 Query: 296 FVGFDTGFMQFFRVREKSM----------TMAELLIGSRKTYGLNLIGGVRRDILKEQRL 345 ++G+ + +++ M + L ++GG + K Sbjct: 120 YMGYSNPLKMLDKYKKEINIALDLKNLGSWMMDELGARAIHQENVVMGGFGKLPDKTTLE 179 Query: 346 QTLKLVREMRADVSELVEMLLATPNMEQ------------RTQGIGILDRQIARDLRFDH 393 + K ++E E+ E+ R GI I+ F+ Sbjct: 180 KMKKRLQEALPLAEYTFELFSKLEQYEEVEGPIIHMAVRPRGDVYGIYGDAISVSDGFEF 239 Query: 394 PYADYGNIPKTLFTFT--------------GGDVFSRV-------MVRVKETFDS----- 427 P Y SRV R KE ++S Sbjct: 240 PSEGYKKHMVERVVEHSFAKHSFYNGEKPFMTGAISRVVNHADKLYGRAKELYESHKDLL 299 Query: 428 ----------------LAMLEFALDNMPD----TPLLTEGFSYKPHAFALGFVEAPRGED 467 + +E +D + + P+ F + EAPRG Sbjct: 300 RPTNPFANNLAQALELVYFMERGIDLIDEALAKWPIRPRDEVDVKDGFGVSTTEAPRGIL 359 Query: 468 VHWSMLGDNQKLFRWRCRAATYANWPVLR----YMLRGNTVSD-------APLIIGSLDP 516 V+ + + ++ T N ++ M + D A +++ + DP Sbjct: 360 VYALEV-KDGRVAYADIITPTAFNLAMMEVHVRMMAEKHYNDDPERLKLLAEMVVRAYDP 418 Query: 517 CYSCTDRVTLV 527 C SC+ V + Sbjct: 419 CISCSVHVARL 429 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 73/421 (17%), Positives = 131/421 (31%), Gaps = 85/421 (20%) Query: 188 PLHITSDEPGHFRLFVDGEQIVDADYRLF--YVHRGMEKLAETRMGYNEVTFLSDRVCGI 245 ++ S GH ++ + + + F RG EK+ + EV + +CGI Sbjct: 4 EINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSG-LPMEEVPRVVSTICGI 62 Query: 246 CGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGFMQ 305 C H A + + G+E A +R +LL + H L+L F + + Sbjct: 63 CRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALP-DFLSPEER 121 Query: 306 ---------------FFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKL 350 R R ++ + ++L G L GG + E+ + Sbjct: 122 NIFGVIRNLGELGRELLRKRGYAVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERY 181 Query: 351 VREMRADVSELVEMLLAT----PNMEQRTQGIGILDRQIA--RD-------------LRF 391 RE+ +VE+L A +E R +G + + D LRF Sbjct: 182 SRELLDLGYRMVEVLEAALDMGDGLELRAATLGTEKKGLVNLYDGEQVVKDEEGKEVLRF 241 Query: 392 DHP-YAD----------YGNIPKTLFTFTGG---DVFSRVMV-----RVKET-------- 424 YAD Y + + +R+ + E Sbjct: 242 SGKEYADIITEKSLSWSYSKLTEIKPLGEKLYVVGPLARLKTAELTPKASEIVKTYGVSN 301 Query: 425 -------FDSLAMLEFALDNMPDTPL----LTEGFSYKPHAFALGFVEAPRGEDVHWSML 473 ++ ++ A + + + K +G VEAPRG +H Sbjct: 302 NLLYNHFARAVEIIYAAERLLELSQSYRGGRIQNEPQKVAGEGVGIVEAPRGTLIHHYWT 361 Query: 474 GDNQKLFRWRCRAATYANWPVLRYML--RGNTVSD-------APLIIGSLDPCYSCTDRV 524 + + AT N + +++ SD + I + DPC +C Sbjct: 362 DEKGIVRGSNLIVATTHNVRAINHVVGKVAERASDTRNLAEKVEVAIRAFDPCMACATHA 421 Query: 525 T 525 Sbjct: 422 V 422 >UniRef50_B5YKI4 NADH-quinone oxidoreductase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKI4_THEYD Length = 177 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 8/163 (4%) Query: 12 AILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQH---DGWLPVLFGNDE 68 I+ ++ +F VL ++ +I VK + D++ +L +L L D Sbjct: 5 EIIKRIRDKFSDEVLWF-ICFRDECSIVVKKEKIKDILSHLKNTPELEFDYLIDLTAVDY 63 Query: 69 RT-LNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGL 127 + V Y L M K I +KA V SV A W ERE DM+G+ Sbjct: 64 LGFREPRFDVVYHL-MSIKHKHRIRIKAQVPEQGCCIDSVADLWATANWFERECYDMFGI 122 Query: 128 IPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSET 170 G PD RR+++P+DW + PLRKD + Sbjct: 123 EFTGHPDLRRILMPEDW--NGFPLRKDYPVKSELADKEWGIYK 163 >UniRef50_Q0CI54 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial n=7 Tax=Eukaryota RepID=Q0CI54_ASPTN Length = 688 Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 66/193 (34%), Gaps = 8/193 (4%) Query: 8 NRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ---HDGWLPVLF 64 + + P V +++ I V + V+ +L Y + + Sbjct: 28 DSLHKYGQYIMACLPKHVQQFSVW-KDELVIYVPPTGVIPVMSFLKYHTAAEYTQISDIT 86 Query: 65 GNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDM 124 D T + + V Y L + I VK D PSVT A+W ERE+ DM Sbjct: 87 AVDFPTRDQRFEVVYNL-LSVRYNSRIRVKTYADEARP-VPSVTGLFEGALWYEREVYDM 144 Query: 125 YGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVI 184 +G+ G PD RR++ D+ D HPLRKD + + I Sbjct: 145 FGVFFSGHPDLRRIMT--DYGFDGHPLRKDFPLTGYTELRYDEEKKRIVIEPLELTQAFR 202 Query: 185 PVGPLHITSDEPG 197 + G Sbjct: 203 NFEGGTAAWEPVG 215 >UniRef50_B3QUS1 NADH-quinone oxidoreductase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QUS1_CHLT3 Length = 177 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 5/147 (3%) Query: 16 ALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWL-PVLFGNDERTLNGH 74 AL++ FP A+L+ + ++T VK + ++ Q+L + L + G D Sbjct: 8 ALQSAFPKALLETTK-FRNELTFRVKKENIREISQFLKEELGFNLCVDICGADRFNEEPR 66 Query: 75 YAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLPD 134 + V Y L M I +K ++ PSV PAA W ERE DM+G++ V PD Sbjct: 67 FEVIYNL-MNLEHNTRIRLKVWLEEAKPHLPSVISVWPAADWYERETYDMFGIVFVNHPD 125 Query: 135 QRRLVLPDDWPEDMHPLRKDAMDYRLR 161 RR+ +P+D+ + P+RK+ + Sbjct: 126 MRRIYMPEDF--EYFPMRKEFPLVGVP 150 >UniRef50_Q2S5J1 NADH-quinone oxidoreductase n=3 Tax=Rhodothermaceae RepID=Q2S5J1_SALRD Length = 234 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 56/181 (30%), Positives = 84/181 (46%), Gaps = 5/181 (2%) Query: 5 SSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHD-GWLPVL 63 + R A++ AL+ +F AVLD ER + TI V+ N + +V ++L + + L Sbjct: 40 KDTTRVPAVIDALREEFGAAVLDVERYA-NEDTIYVEKNRIREVCRFLKEEEGFDYFVDL 98 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D T Y V+Y L + + + +K VD + PSVT AA W ERE D Sbjct: 99 GGIDNFTAEDRYEVFYNL-VSTERQKRLRLKVQVDEGDMQVPSVTEVYRAANWNEREAYD 157 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 M+G V PD RR+ +P+D+ D HPLRK+ + +T + A Sbjct: 158 MFGFSFVDHPDPRRMYMPEDF--DYHPLRKEFPQLGIPGSLPLPPQTPDGDLTMDPFAAA 215 Query: 184 I 184 Sbjct: 216 H 216 >UniRef50_Q28T74 NADH-quinone oxidoreductase subunit C n=7 Tax=Alphaproteobacteria RepID=NUOC_JANSC Length = 207 Score = 155 bits (391), Expect = 6e-36, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 70/188 (37%), Gaps = 7/188 (3%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW---LPVL 63 S+ + + L + V+ + ++++TV + +++L L + Sbjct: 2 SDALKELAEYLSEKRSDDVVSTDVNAMGELSVTVAPAQMVGFIEFLKTDRTCRFSTLIDI 61 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 D + + + V Y + + + V+A + + PS++ P A W EREI D Sbjct: 62 TAVDYPSRDRRFDVVYHF-LSMYQNHRVRVRAAIREED-TLPSISGVHPGAGWYEREIYD 119 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 M+G++ G D RRL+ D+ HPLRKD + + Sbjct: 120 MFGILFTGHADLRRLLT--DYGFRGHPLRKDFPTTGYTEVRYDEELKRVVYEPVSLVQEY 177 Query: 184 IPVGPLHI 191 + Sbjct: 178 RQFDFMSP 185 >UniRef50_P23710 NADH-ubiquinone oxidoreductase 30.4 kDa subunit, mitochondrial n=65 Tax=Eukaryota RepID=NDUS3_NEUCR Length = 283 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 42/184 (22%), Positives = 66/184 (35%), Gaps = 8/184 (4%) Query: 17 LKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ---HDGWLPVLFGNDERTLNG 73 L P + +++TI + + V +L Y + + D T + Sbjct: 80 LMGCLPKYIQQFSVW-KDELTIYISPAGVIPVFSFLKYNTAAEYTQVSDITAVDFPTKDQ 138 Query: 74 HYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRDMYGLIPVGLP 133 + V Y L + I VK D S PS+TP A W ERE+ D++G+ G P Sbjct: 139 RFEVVYNL-LSVRHNSRIRVKTYADEVSP-VPSITPLYDGANWYEREVYDLFGVFFTGHP 196 Query: 134 DQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARVIPVGPLHITS 193 D RR++ D+ D HPLRKD + + Sbjct: 197 DLRRIMT--DYGFDGHPLRKDFPMTGYTEIRYDEEKKRIVTEPLEMTQAFRNFEGGSSAW 254 Query: 194 DEPG 197 ++ G Sbjct: 255 EQVG 258 >UniRef50_Q7G6A6 NAD, putative n=3 Tax=Magnoliophyta RepID=Q7G6A6_ORYSJ Length = 352 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 78/221 (35%), Gaps = 42/221 (19%) Query: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIA----------------RD 388 + L+ + R + + P +R +G+G + + A D Sbjct: 132 ERGLRRLLGKRQRLLAYLAKKNRNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWD 191 Query: 389 LRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGF 448 LR Y Y + GD +R +VR+ E +S+ +++ A++ +P P Sbjct: 192 LRKVDLYESYNQFDWKVQWQKEGDSLARYLVRIGEMRESIKIIQQAVEKIPGGPYENLEV 251 Query: 449 SYKPHA--------------------------FALGFVEAPRGEDVHWSMLGDNQKLFRW 482 A VEAP+GE + + D+ +RW Sbjct: 252 RCFKKAKNSEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSLFPWRW 311 Query: 483 RCRAATYANWPVLRYMLRGNTVSDAPLIIGSLDPCYSCTDR 523 + R + N +L +++ ++D I+GS+D D Sbjct: 312 KIRPPGFINLQILPQLVKKMKLADIMTILGSIDIIMGEVDH 352 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 60/421 (14%), Positives = 125/421 (29%), Gaps = 83/421 (19%) Query: 191 ITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAH 250 + G V ++ A+ ++ R E R + E ++ R+CGIC A+ Sbjct: 18 ARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGR-DFREPPDITSRICGICPVAY 76 Query: 251 SVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLS--CHFVGFDTGF----- 303 V+ N++E A G + Q +R +L E + SH L++ L F+G Sbjct: 77 QVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFLGASDAIELARI 136 Query: 304 -----MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADV 358 + +++ + +++ G +GG R + + +R D Sbjct: 137 ARPDVERGLTLKKAGNAILDMIGGRSIHPVNVRLGGFYRTPTPSELAPLAEQLRWALDDA 196 Query: 359 SELVEMLLATPN-----------------------MEQRTQGIGILDRQIARDLR-FDHP 394 V+ + + T G + + P Sbjct: 197 LATVQWVSHFEIPDAEVDTELLALAQPGRYAIEDGVLTTTSGSSFAPEEFCDHVAERQVP 256 Query: 395 YADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLA------------------MLEFALD 436 ++ + + G +R + + ++ ++ A++ Sbjct: 257 HSTALHAHLDGQAYLTG-PLARYSLHSADLSETARQAATEAGLGTVCRNPFQSIVVRAVE 315 Query: 437 NM--PDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLF------------RW 482 + D L Y+P + + +PR + L+ R Sbjct: 316 TVFAVDEALRLIREYYRPESPYVDM--SPRAATGYGVSEAPRGVLYHLYQLDSEGRILRA 373 Query: 483 RCRAATYANWPVLRYMLRGNTVSDA-----------PLIIGSLDPCYSCTDRVTLVDVRK 531 T N + LR ++ I + DPC SC V + + Sbjct: 374 TIIPPTSQNQAAIENDLRNTLAANLTLTDAELTELCERTIRNYDPCISCATHFLDVTINR 433 Query: 532 R 532 + Sbjct: 434 K 434 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 151 bits (381), Expect = 7e-35, Method: Composition-based stats. Identities = 67/444 (15%), Positives = 127/444 (28%), Gaps = 121/444 (27%) Query: 191 ITSDEPGHFRLFV---DGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICG 247 + GH + + D ++ D+ F RG EK E + E+ + +R+CGIC Sbjct: 9 PVTRIEGHASIAIQLDDRGEVQDSRVH-FMSLRGFEKFVEGK-PAEELPRIVNRICGICP 66 Query: 248 FAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSC--HFV-------- 297 + H +A +V+ G+ P +R ++ + +L+ FV Sbjct: 67 WQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMGPDSDYG 126 Query: 298 ---------GFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTL 348 + R+R + + E G ++GG R +L+E R + L Sbjct: 127 VRNVIGVAKAHPELAGRVVRMRYATKMILEKFAGKAIHPHAGVVGGFSRVLLEEDRREFL 186 Query: 349 KLVREMRADVSELVEMLLATPNMEQRTQGI-----------GILDRQIARDL-----RFD 392 ++EM ++ T + + G +D A +L R Sbjct: 187 GKMKEMLEFALFTID-FAKTQVFPKYLDAVASLGVINTGFIGTVDDHGALNLYDGKIRLM 245 Query: 393 HP-----------YADYGNIPKTL-------------------FTFTGGDVFSRVMVRV- 421 P Y DY G + + R+ Sbjct: 246 KPDGSFVDFDPQDYLDYLGEHVEPHSYGKFPYARCWNEGFSLDPLQPRGIYRANTLARIN 305 Query: 422 --------------KETFDS-------------LAMLEF---------ALDNMPDTPLLT 445 +E + ++E L++ T Sbjct: 306 VADKMATPRAQAELEEFREKFGRPAQFTLLHHWARLIEEVYACEHAIELLEDPEITDPNV 365 Query: 446 EGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYML------ 499 +G +EAPRG +H + + T N + + Sbjct: 366 RAKVEPKAGRGVGCLEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQAART 425 Query: 500 ---RG----NTVSDAPLIIGSLDP 516 RG ++ + + + DP Sbjct: 426 LIQRGVVDETILNKIEMAVRAYDP 449 >UniRef50_A9MAI1 NADH-quinone oxidoreductase subunit C n=86 Tax=cellular organisms RepID=NUOC_BRUC2 Length = 202 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 66/189 (34%), Gaps = 8/189 (4%) Query: 6 SSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGWLP---V 62 S + ++ + A+ + ++T+ V + L V+ +L Sbjct: 2 SEEALGELSGYIRERLGDAIEEANL-AYGELTLCVPVASLIGVLTFLRDDVQCQFVNLTD 60 Query: 63 LFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIR 122 + G D + V Y L + + I VK D D+ PS P A W ERE Sbjct: 61 ISGVDYPQREKRFDVVYQL-LSPRQNQRIRVKVQADEDTL-VPSAVPVFFGAEWYEREAY 118 Query: 123 DMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDAR 182 DMYG++ G PD RR++ D+ + HPLRKD D Sbjct: 119 DMYGILFSGHPDLRRILT--DYGFEGHPLRKDFPLTGFVEVRYNDELKRVVYEPVQLRQE 176 Query: 183 VIPVGPLHI 191 L Sbjct: 177 FRNFDFLSP 185 >UniRef50_UPI0001926F1C PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 3, (NADH-coenzyme Q reductase) n=1 Tax=Hydra magnipapillata RepID=UPI0001926F1C Length = 268 Score = 151 bits (381), Expect = 8e-35, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 65/198 (32%), Gaps = 7/198 (3%) Query: 4 NSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQ---HDGWL 60 + ++ R + P V E +++ + + + + ++ +L L Sbjct: 62 SPTTTRLMEFGQFVSDSMPKFVQSAEVTEGDELQVLISPDGIIPILTFLRDHTNAQFKQL 121 Query: 61 PVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGERE 120 + D + + + Y L + I VK D + S + +A W ERE Sbjct: 122 MDITAVDWPSKPYRFEIVYNL-LSVRYNTRIRVKTYTDELTP-LDSASSLFHSANWAERE 179 Query: 121 IRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSD 180 I DMYG+ PD RR++ D+ + HPLRKD + Sbjct: 180 IWDMYGVFFSNHPDLRRILT--DYGFEGHPLRKDFPLSGFYEIRYDSELKRLVQDPVELA 237 Query: 181 ARVIPVGPLHITSDEPGH 198 P H Sbjct: 238 QEFRKFELQSPWEQFPKH 255 >UniRef50_A9W1N1 NADH-quinone oxidoreductase subunit C n=9 Tax=Alphaproteobacteria RepID=NUOC_METEP Length = 219 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 68/188 (36%), Gaps = 8/188 (4%) Query: 7 SNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDG---WLPVL 63 + A+ + AV + T ++T+ V+ + + + YL + + Sbjct: 21 EDALRAMGERIAGALGPAVTEWAI-TRGELTLVVQGSDIVYALTYLRDEPACAFRCFIDI 79 Query: 64 FGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGEREIRD 123 G D + V Y L + + VK DA + PS P PAA W ERE D Sbjct: 80 CGVDYPQRARRFDVVYHL-LSLRHNMRVRVKVQTDAATP-VPSAIPVFPAANWYERETYD 137 Query: 124 MYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGNSDARV 183 +YG++ G PD RRL+ D+ + HPLRKD E Sbjct: 138 LYGILFSGHPDLRRLLT--DYGFEGHPLRKDFPLTGFVEVRYDQDEARVVYEPVKLTQEF 195 Query: 184 IPVGPLHI 191 L Sbjct: 196 RNFDFLSP 203 >UniRef50_B3RJ43 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RJ43_TRIAD Length = 269 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 65/217 (29%), Gaps = 13/217 (5%) Query: 2 NVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINLLPDVVQYLYYQHDGW-- 59 R L P + +++ + V L + +L + Sbjct: 53 QKKEVETRLTDYGRYLLDIIPKYLQGINLALGDELELLVYPEALIPTMIFLRNHTNAQFE 112 Query: 60 -LPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSREFPSVTPRVPAAVWGE 118 L + D + + Y L + + VK D + S+TP P A W E Sbjct: 113 SLVDITAIDVPKREYRFELIYNL-LSLRYNSRVRVKTYTDELTP-IESITPIFPGANWFE 170 Query: 119 REIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRLRPEPTTDSETYPFINEGN 178 RE+ DMYG+ PD RR++ D+ D HP RKD D Sbjct: 171 REVWDMYGVYFANHPDLRRILT--DYGFDGHPQRKDFPLSGYTELRYDDELKRIVSEPVE 228 Query: 179 SDARVIPVG-----PLHITSDEPGHFRLFVDGEQIVD 210 E L GE+I + Sbjct: 229 FAQEFRKFDLETPWEQFPAYREENRASLE-AGEEIKE 264 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.140 0.384 Lambda K H 0.267 0.0432 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,398,920,827 Number of Sequences: 3077464 Number of extensions: 154307721 Number of successful extensions: 399005 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1377 Number of HSP's successfully gapped in prelim test: 249 Number of HSP's that attempted gapping in prelim test: 393549 Number of HSP's gapped (non-prelim): 2175 length of query: 555 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 421 effective length of database: 628,016,180 effective search space: 264394811780 effective search space used: 264394811780 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.5 bits)