BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (217 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E... 379 e-104 UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E... 264 1e-69 UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E... 257 2e-67 UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E... 245 6e-64 UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E... 237 2e-61 UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q... 234 1e-60 UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae ... 218 1e-55 UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandens... 217 3e-55 UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testost... 215 8e-55 UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumo... 209 7e-53 UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella dranco... 205 1e-51 UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E... 204 1e-51 UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 196 5e-49 UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 195 8e-49 UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter Re... 189 7e-47 UniRef50_Q4FV02 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 185 1e-45 UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q... 184 1e-45 UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr06... 181 2e-44 UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 177 2e-43 UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales R... 176 4e-43 UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E... 173 3e-42 UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria ... 169 6e-41 UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 168 1e-40 UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2... 164 1e-39 UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 161 2e-38 UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 160 2e-38 UniRef50_C6W5I1 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 155 8e-37 UniRef50_A5GM98 Pseudouridine synthase n=3 Tax=Synechococcus Rep... 147 3e-34 UniRef50_C8PVP6 RNA pseudouridine synthase family protein n=1 Ta... 147 3e-34 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 129 9e-29 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 127 2e-28 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 125 8e-28 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 124 3e-27 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 121 1e-26 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 120 3e-26 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 119 7e-26 UniRef50_A3QB38 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 118 2e-25 UniRef50_A6BL18 Pseudouridine synthase Rsu (Fragment) n=1 Tax=Le... 118 2e-25 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 117 3e-25 UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepI... 115 7e-25 UniRef50_A4BXB5 Pseudouridine synthase n=2 Tax=Bacteroidetes Rep... 115 9e-25 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 114 2e-24 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 113 3e-24 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 113 4e-24 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 112 8e-24 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 111 1e-23 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 110 3e-23 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 110 4e-23 UniRef50_A8FRI1 Pseudouridine synthase n=17 Tax=Bacteria RepID=A... 110 4e-23 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 109 7e-23 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 109 7e-23 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 109 8e-23 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 108 9e-23 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 108 1e-22 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 107 2e-22 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 107 3e-22 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 107 3e-22 UniRef50_C5KJS4 Pseudouridine synthase, putative n=2 Tax=Perkins... 107 4e-22 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 106 4e-22 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 106 5e-22 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 106 6e-22 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 106 6e-22 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 105 8e-22 UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 105 9e-22 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 105 1e-21 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 105 1e-21 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 103 3e-21 UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID... 103 4e-21 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 103 4e-21 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 103 5e-21 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 103 5e-21 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 102 1e-20 UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdello... 101 1e-20 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 101 2e-20 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 101 2e-20 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 100 2e-20 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 100 3e-20 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 100 4e-20 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 100 5e-20 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 100 6e-20 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 100 6e-20 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 100 6e-20 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 100 6e-20 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 99 7e-20 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 99 8e-20 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 99 9e-20 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 99 1e-19 UniRef50_C8N9M2 RNA pseudouridine synthase family protein n=1 Ta... 98 2e-19 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 98 2e-19 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 98 2e-19 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 98 2e-19 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 98 2e-19 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 97 3e-19 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 97 3e-19 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 97 4e-19 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 97 4e-19 UniRef50_A9BF27 Pseudouridine synthase n=1 Tax=Petrotoga mobilis... 97 5e-19 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 97 5e-19 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 97 5e-19 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 97 5e-19 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 97 6e-19 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 96 6e-19 UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 96 6e-19 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 96 6e-19 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 96 8e-19 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 96 1e-18 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 95 1e-18 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 95 1e-18 UniRef50_Q2NZN4 Pseudouridine synthase n=13 Tax=Xanthomonadaceae... 95 1e-18 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 95 1e-18 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 95 1e-18 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 95 2e-18 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 95 2e-18 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 94 2e-18 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 94 3e-18 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 94 3e-18 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 94 3e-18 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 94 3e-18 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 94 4e-18 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 94 4e-18 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 94 4e-18 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 94 4e-18 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 94 4e-18 UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae ... 94 5e-18 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 93 5e-18 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 93 5e-18 UniRef50_Q11WC7 Pseudouridine synthase n=2 Tax=Sphingobacteriale... 93 5e-18 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 93 5e-18 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 93 6e-18 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 93 6e-18 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 93 7e-18 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 93 7e-18 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 93 7e-18 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 92 1e-17 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 92 1e-17 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 92 1e-17 UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventr... 92 2e-17 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 92 2e-17 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 91 2e-17 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 91 2e-17 UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis exc... 91 2e-17 UniRef50_C5CGJ5 Pseudouridine synthase n=1 Tax=Kosmotoga olearia... 91 3e-17 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 91 3e-17 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 91 3e-17 UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 90 4e-17 UniRef50_A0CY18 Chromosome undetermined scaffold_30, whole genom... 90 5e-17 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 90 6e-17 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 89 8e-17 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 89 8e-17 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 89 9e-17 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 89 1e-16 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 89 1e-16 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 89 1e-16 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 89 1e-16 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 89 1e-16 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 89 1e-16 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 88 2e-16 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 88 2e-16 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 88 2e-16 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 88 2e-16 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 88 2e-16 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 88 2e-16 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 88 2e-16 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 88 2e-16 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 88 2e-16 UniRef50_Q3Z8C8 Pseudouridine synthase n=5 Tax=Dehalococcoides R... 88 2e-16 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 88 3e-16 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 87 3e-16 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 87 3e-16 UniRef50_D2UX35 Predicted protein n=1 Tax=Naegleria gruberi RepI... 87 4e-16 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 87 4e-16 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 87 5e-16 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 87 6e-16 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 86 6e-16 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 86 6e-16 UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas Rep... 86 7e-16 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 86 8e-16 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 86 8e-16 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 86 8e-16 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 86 9e-16 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 86 1e-15 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 86 1e-15 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 86 1e-15 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 86 1e-15 UniRef50_C6VS09 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 85 1e-15 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 85 1e-15 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 85 1e-15 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 85 1e-15 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 85 1e-15 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 85 2e-15 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 85 2e-15 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 85 2e-15 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 85 2e-15 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 85 2e-15 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 85 2e-15 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 84 2e-15 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 84 2e-15 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 84 3e-15 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 84 3e-15 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 84 3e-15 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 84 3e-15 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 84 3e-15 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 84 3e-15 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 84 3e-15 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 84 4e-15 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 84 4e-15 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 83 5e-15 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 83 5e-15 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 83 6e-15 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 83 6e-15 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 83 6e-15 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 83 7e-15 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 83 7e-15 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 83 8e-15 UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 82 9e-15 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 82 9e-15 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 82 1e-14 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 82 1e-14 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 82 1e-14 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 82 1e-14 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 82 1e-14 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 82 1e-14 UniRef50_B7G1P9 Predicted protein n=1 Tax=Phaeodactylum tricornu... 82 1e-14 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 82 2e-14 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 82 2e-14 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 82 2e-14 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 82 2e-14 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 82 2e-14 UniRef50_C9RMB6 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 81 2e-14 UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus... 81 2e-14 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 81 2e-14 UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 81 3e-14 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 81 3e-14 UniRef50_A6BG46 Putative uncharacterized protein n=2 Tax=Clostri... 81 3e-14 UniRef50_B5YMC9 Predicted protein n=1 Tax=Thalassiosira pseudona... 81 3e-14 UniRef50_Q605S3 Pseudouridine synthase n=1 Tax=Methylococcus cap... 81 3e-14 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 80 3e-14 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 80 4e-14 UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter Re... 80 4e-14 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 80 4e-14 UniRef50_Q30NZ7 Pseudouridine synthase n=3 Tax=Campylobacterales... 80 4e-14 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 80 4e-14 UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 80 4e-14 UniRef50_Q4Z2R8 Pseudouridine synthetase, putative n=3 Tax=Plasm... 80 5e-14 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 80 5e-14 UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales ... 80 6e-14 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 80 7e-14 UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazon... 79 7e-14 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 79 9e-14 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 79 1e-13 >UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Enterobacteriaceae RepID=RLUE_SALTY Length = 221 Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/215 (83%), Positives = 198/215 (92%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 MRQ I SENTMQKTSFRNH VKRFSS+++++ + ENQP RV+LFNKPYDVLPQFTDEAGR Sbjct: 1 MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGR 60 Query: 61 KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +TLK+FIPVQGVYAAGRLDRDSEGLLVLTN+GALQARLTQPGKRTGKIYYVQVEGIP Sbjct: 61 RTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNA 120 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL+ALR GVTLNDGPTLPAG E+V EP WLWPR PPIRERK+IPTSWLK+TLYEGRNRQV Sbjct: 121 ALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQV 180 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RRMTAHVG PTLRLIRY+MGDY+L+ L NG+WRE+ Sbjct: 181 RRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREI 215 >UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E n=107 Tax=Bacteria RepID=RLUE_VIBCH Length = 241 Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 126/177 (71%), Positives = 148/177 (83%), Gaps = 1/177 (0%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +VILFNKPYD L QFTD GRKTL ++IP++ VYAAGRLDRDSEGLL+LTN+G LQARLT Sbjct: 65 KVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYAAGRLDRDSEGLLILTNDGILQARLT 124 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 QP + K Y+VQVEG P + LEALR+GVTL DGPTLPA +++ EP LWPRNPP+R Sbjct: 125 QPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPT-LWPRNPPVRF 183 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R +IPT+WL ITL EGRNRQVRRMTAH+GFPTLRLIRY+MGD++L +L GEWREVT Sbjct: 184 RAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPGEWREVT 240 >UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E n=61 Tax=Bacteria RepID=RLUE_PASMU Length = 241 Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 127/219 (57%), Positives = 155/219 (70%), Gaps = 13/219 (5%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQP-------------TRVILFNKPYDVLPQFTDEA 58 QKT R ++ + +++ KP+ +P T+VILFNKPYDVL QF+DE Sbjct: 9 QKTKPRPSSLRSVNKRKAAEIKPQKRPLSFRQKKTVNFAETQVILFNKPYDVLTQFSDEE 68 Query: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 GR TLK FIP+ VY AGRLDRDSEGL++LTNNG +Q RL P T K Y+ QVEGIP Sbjct: 69 GRATLKAFIPIPHVYPAGRLDRDSEGLVLLTNNGEIQHRLAVPKFNTEKTYFAQVEGIPQ 128 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L LR GV LNDG TLPA LV EP WLW RNPPIRERK IPTSWL+I ++EGRNR Sbjct: 129 ETDLAQLRQGVVLNDGKTLPAKVRLVPEPNWLWQRNPPIRERKQIPTSWLEIKIHEGRNR 188 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 QVRRMTAH+GFPTLRLIRY M ++L NL G++R++++ Sbjct: 189 QVRRMTAHIGFPTLRLIRYQMALFNLANLEQGQYRQLSE 227 >UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E n=244 Tax=Bacteria RepID=RLUE_VIBPA Length = 238 Score = 245 bits (626), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 115/179 (64%), Positives = 143/179 (79%), Gaps = 1/179 (0%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQA 96 Q +VI+FNKPYD L QFTD GRKTL ++IPV+ VYAAGRLDRDSEGL+VLTN+G LQA Sbjct: 59 QNRKVIIFNKPYDTLSQFTDGDGRKTLADYIPVKDVYAAGRLDRDSEGLMVLTNDGILQA 118 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 +LTQP ++ K Y+VQV+G P + LE LR GV L DG TLPA E++D P +W RNPP Sbjct: 119 KLTQPKSKSPKTYWVQVDGAPQEQDLEKLRKGVELKDGMTLPAKVEVIDAPT-IWERNPP 177 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +R R +IPT+WL IT+ EGRNRQVRRMTAH+GFPTLRL+RY+MGD +L +L G+W+E+ Sbjct: 178 VRFRANIPTTWLAITIIEGRNRQVRRMTAHIGFPTLRLVRYSMGDITLGDLQPGQWKEI 236 >UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Proteobacteria RepID=RLUE_PSEAE Length = 189 Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 119/184 (64%), Positives = 143/184 (77%), Gaps = 2/184 (1%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNN 91 + P ++P +++LFNKP+DVL QF DE GR TLK+FIPV GVY AGRLDRDSEGLL+LTN+ Sbjct: 3 KAPPSEP-KLLLFNKPFDVLTQFNDEQGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTND 61 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G LQAR+ P + K Y+VQVEG P ++ L LR GVTLNDGPTLPA A L+DEP LW Sbjct: 62 GRLQARIADPRHKLPKTYWVQVEGTPDEEQLRRLREGVTLNDGPTLPAEARLLDEPT-LW 120 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 R PP+R RKS+PT WL++ + EGRNRQVRRMTA VG PTLRL+R +G +SLD L GE Sbjct: 121 ERVPPVRFRKSVPTHWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWSLDGLGLGE 180 Query: 212 WREV 215 WREV Sbjct: 181 WREV 184 >UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q1GHH2_SILST Length = 221 Score = 234 bits (598), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 112/181 (61%), Positives = 142/181 (78%), Gaps = 4/181 (2%) Query: 39 TRVILFNKPYDVLPQFTDEAG----RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGAL 94 +R+I FNKP+DVLPQFTD R TL +++ GVY AGRLDRDSEGL++LT+NG L Sbjct: 2 SRLIRFNKPFDVLPQFTDRGSEGSPRATLSDYVDCPGVYPAGRLDRDSEGLMLLTDNGRL 61 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 QA ++ P + K Y+VQVEGIPT+DAL+ALR GV L DG T PA AEL+ EPA LW R Sbjct: 62 QAWISDPKHKLEKTYWVQVEGIPTEDALKALRQGVDLKDGMTRPAKAELISEPAQLWART 121 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 PPIRERKS+PT+WL++ + EG+NRQVRRMTA +G+PTLRLIRYA+G ++LD LA G+W + Sbjct: 122 PPIRERKSVPTAWLELKISEGKNRQVRRMTAAMGYPTLRLIRYAIGAWTLDGLAQGKWDD 181 Query: 215 V 215 + Sbjct: 182 L 182 >UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae RepID=B3GZS7_ACTP7 Length = 232 Score = 218 bits (555), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/175 (58%), Positives = 126/175 (72%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 T V+LFNKP+DVL QFTDE GR+TLK+FIP+ +Y GRLDRDSEGLL+LTNNG +Q RL Sbjct: 40 TVVVLFNKPFDVLTQFTDEQGRQTLKDFIPIPQIYPVGRLDRDSEGLLLLTNNGEIQHRL 99 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K Y QVEGIP L L GV L DG T PA A+ + P + W P IR Sbjct: 100 ANPKFEKQKTYLAQVEGIPQAADLAKLEKGVELKDGLTKPAKAKAISAPNYEWQTAPKIR 159 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 ERK+IPTSW+++ ++EG+NRQVRRMTAH+GFPTLRLIR +G + L L +GE+R Sbjct: 160 ERKTIPTSWIELKIHEGKNRQVRRMTAHIGFPTLRLIRIGLGQFQLGELNSGEYR 214 >UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BDP6_9GAMM Length = 228 Score = 217 bits (552), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 105/177 (59%), Positives = 134/177 (75%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +R +LFNKP+ VL QFTD R+TL +FI V VY+AGRLD DSEGLL+LT++GAL + Sbjct: 2 SRYLLFNKPFQVLTQFTDPDNRQTLADFIDVPEVYSAGRLDYDSEGLLLLTDDGALIHSM 61 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P +T K Y QVEG T +A+ L +G+ L DGPTLPA A V EPAWLWPR PPIR Sbjct: 62 MNPRFKTPKTYLAQVEGDITDEAIRRLESGLQLKDGPTLPAKARRVSEPAWLWPRQPPIR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ER +IP SW+++TL EGRNRQVRRMTA VGFPTLRLIR A+ + ++++L+ G+++EV Sbjct: 122 ERATIPASWVELTLVEGRNRQVRRMTAAVGFPTLRLIRVALAELTVESLSVGQYKEV 178 >UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testosteroni RepID=D0IWI1_COMTE Length = 223 Score = 215 bits (548), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 111/201 (55%), Positives = 143/201 (71%), Gaps = 9/201 (4%) Query: 24 FSSQRSTR-------RKPENQP--TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA 74 FSS RS+ R+P +P TR++ F+KPY VL QFT E + LK++I V GVY Sbjct: 17 FSSNRSSNLRRSTVVRQPAPRPGVTRLLCFHKPYGVLSQFTPEGKWQGLKDWIDVPGVYV 76 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 AGRLD DSEGLL+LTN+G LQAR+ P + K Y+VQVEGIP + AL+ LR GV L+DG Sbjct: 77 AGRLDADSEGLLLLTNDGQLQARIADPRHKMEKTYWVQVEGIPDEAALQRLREGVELSDG 136 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 TLPA A L++ +WPRNPPIR R++IP W+++ + EGRNRQVRRMTA VG PTLRL Sbjct: 137 KTLPAKARLIEPQPLMWPRNPPIRVRQNIPDCWIELIIREGRNRQVRRMTAAVGHPTLRL 196 Query: 195 IRYAMGDYSLDNLANGEWREV 215 +R A+G YS++ L G+W +V Sbjct: 197 VRMAVGPYSIEGLEPGQWLDV 217 >UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumophila RepID=Q5ZXB8_LEGPH Length = 222 Score = 209 bits (531), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 101/176 (57%), Positives = 128/176 (72%), Gaps = 1/176 (0%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ILFNKPY +L QFT E +TL FI + G YAAGRLD+ SEGLL+LT++G LQ RLT Sbjct: 25 QLILFNKPYGILTQFTGELPEQTLSAFIKLPGFYAAGRLDKQSEGLLILTDDGKLQHRLT 84 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y+VQVEG+PT L+ LR G+ + D LPA A L+ EP +WPR PPIRE Sbjct: 85 HPKFEKKKHYWVQVEGVPTDKDLQPLRKGLVIKDITFLPAEARLISEPK-IWPRIPPIRE 143 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RK IPT+WL+I L EG+N Q+R+MTA +GFPTLRLIRY +GD+ LD L GE++ + Sbjct: 144 RKHIPTTWLEIILREGKNHQIRKMTAAIGFPTLRLIRYQIGDWHLDQLQPGEYKLI 199 >UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZI4_9GAMM Length = 240 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/175 (58%), Positives = 127/175 (72%), Gaps = 1/175 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 + +ILFNKP+ V+ QFT E TL EFI YAAGRLD++SEGLL+LTN+GALQ +L Sbjct: 53 SELILFNKPFAVVCQFTGEKHEHTLAEFIDKPDFYAAGRLDKNSEGLLLLTNDGALQHQL 112 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K Y+VQVEGIPT LE L+ G+ L D LPA ++EPA LWPR PP+R Sbjct: 113 THPKFNKKKYYWVQVEGIPTAADLEPLKKGLVLKDITFLPAEVRCIEEPA-LWPRTPPVR 171 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R+SIPTSWL+I L EG+N QVRRMTA +GFPTLRL+R+ +GD+ L +L GE+R Sbjct: 172 FRQSIPTSWLEIILREGKNHQVRRMTAAMGFPTLRLVRHRIGDWQLGDLQPGEFR 226 >UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E n=26 Tax=Bacteria RepID=Q1QUR9_CHRSD Length = 257 Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/178 (57%), Positives = 128/178 (71%), Gaps = 1/178 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 + + L +KPY +L QFTD GR TL E I V +Y AGRLD DSEGLL+LT +GAL R+ Sbjct: 60 SSLYLLHKPYQMLSQFTDTRGRATLAEAIDVPDIYPAGRLDYDSEGLLLLTGDGALAHRI 119 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 + P + K Y+VQVEG P AL+ALR GVTL DGPT PA ++ P + PR+PP+R Sbjct: 120 SHPRHKQPKTYWVQVEGEPEPAALQALRQGVTLRDGPTRPAKVRRLESPD-VAPRHPPVR 178 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R+++PT+WL++TL EGRNRQVRRMTAHVG PTLRLIR A+G + L LA GEWR T Sbjct: 179 HREAVPTAWLELTLSEGRNRQVRRMTAHVGHPTLRLIRVAIGSWHLAGLAPGEWRRET 236 >UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=A3YG85_9GAMM Length = 242 Score = 196 bits (498), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 101/176 (57%), Positives = 125/176 (71%), Gaps = 5/176 (2%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +I+FNKP+ VL QFT + + TL FI Y AGRLD DSEGLL+LT++GALQ + Sbjct: 4 IIVFNKPFQVLSQFTTDEEKATLSSFIDKANFYPAGRLDYDSEGLLLLTDHGALQHLIAS 63 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD--EPAWLWPRNPPIR 158 P + K Y VQVEG T++A+E LR GV L DG T PA A++ EP WPR+PPIR Sbjct: 64 PQHKMPKTYLVQVEGELTKEAVEQLRVGVELKDGLTKPAEAKIASDFEP---WPRHPPIR 120 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 ERK+IPTSWL++T+ EG+NRQVRRMTA VGFPTLRLIR +G YSL ++ G W E Sbjct: 121 ERKNIPTSWLELTITEGKNRQVRRMTAAVGFPTLRLIRTQIGPYSLTDIELGHWLE 176 >UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q6FCZ3_ACIAD Length = 264 Score = 195 bits (496), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 99/178 (55%), Positives = 125/178 (70%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++FNKPYDVL QF +++ T+ FI + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T+DALE LR GV L DG TLPA A V+EP WLW RNPP+R Sbjct: 62 HPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA--NGEWREV 215 R SIPTSW++I++ EGRNRQVRRMTA VGFPTLRLIR +G +L L GE +E+ Sbjct: 122 RASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEI 179 >UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter RepID=A3M7K0_ACIBT Length = 262 Score = 189 bits (479), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 95/178 (53%), Positives = 122/178 (68%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++ NKPYDVL QF + T+ +F+ + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVILNKPYDVLSQFRKDEAHMTVSDFVDDPTLRIAGRLDMDSEGLVFLTDHGGLNQFIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T++ALE LR GV LNDG TLPA A V EP WLW R+PP+R Sbjct: 62 NPANKKYKTYLVQVDGDVTEEALEQLRKGVELNDGMTLPAKAIKVSEPEWLWDRDPPVRY 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA--NGEWREV 215 R SIPTSW++I++ EGRNRQVRRMT+ VGFPTLRLIR +G L L GE +E+ Sbjct: 122 RASIPTSWIEISICEGRNRQVRRMTSAVGFPTLRLIRTKIGTIDLVQLGLQPGETKEI 179 >UniRef50_Q4FV02 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q4FV02_PSYA2 Length = 208 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 97/188 (51%), Positives = 125/188 (66%), Gaps = 14/188 (7%) Query: 39 TRVILFNKPYDVLPQFTDEAG--RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQA 96 + +ILFNKPY V QF D++ TL E+ + + AGRLD SEGLL+LT++G + Sbjct: 4 SSLILFNKPYGVQSQFRDDSNNDHTTLSEYFTDKSLRIAGRLDATSEGLLILTSDGRINK 63 Query: 97 RLTQP---------GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE- 146 +TQP ++ GK Y VQVEG+ T L+ L +GV L DG TLPA A L+DE Sbjct: 64 AITQPPSAKNFAQNKQKQGKTYLVQVEGVVTAVQLKELASGVILKDGKTLPASATLLDEA 123 Query: 147 --PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 P LW R+PPIRERK+IPTSWL +T+YEG+NRQVRRMTAHVG P LRLIR+++ + L Sbjct: 124 DLPITLWQRDPPIRERKNIPTSWLMLTIYEGKNRQVRRMTAHVGLPCLRLIRWSVAGFEL 183 Query: 205 DNLANGEW 212 L GE+ Sbjct: 184 GELGVGEF 191 >UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q2JQ37_SYNJB Length = 226 Score = 184 bits (468), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 101/178 (56%), Positives = 128/178 (71%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 R + F KPY VL QFTD GR TL+ FIPV VY GRLDRDSEGLL+LT++G L ARL Sbjct: 29 RYLKFYKPYGVLTQFTDREGRPTLQSFIPVPRVYPVGRLDRDSEGLLLLTDDGRLNARLI 88 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P +IY+VQVEGIPT AL+ L+ G+ + T PA +++ E L PR+PPIR Sbjct: 89 DPKFGHERIYWVQVEGIPTPQALQQLQQGLIIQGRKTRPAQVKVLAEEPTLPPRDPPIRF 148 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+SIPT+WL++TL EGRNRQVRRMTA VG PTLRL+R +G SL LA G+W+++++ Sbjct: 149 RRSIPTTWLELTLREGRNRQVRRMTAAVGIPTLRLVRVGLGPLSLAGLAPGQWQDLSE 206 >UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr0612 n=16 Tax=Bacteria RepID=Y612_SYNY3 Length = 261 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 103/200 (51%), Positives = 128/200 (64%), Gaps = 20/200 (10%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAG--RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 N+ + I+F KPY VL QFTD + R TLK++I + +Y GRLD+DSEGLL+LT+NG Sbjct: 36 NKTPQTIVFYKPYGVLCQFTDNSAHPRPTLKDYINLPDLYPVGRLDQDSEGLLLLTSNGK 95 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 LQ RL + Y+ QVEG PT + LE LR G+T D PT PA A+++ EP + PR Sbjct: 96 LQHRLAHREFAHQRTYFAQVEGSPTDEDLEPLRRGITFADYPTRPAIAKIITEPDFP-PR 154 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY---------------- 197 NPPIR R SIPTSWL ITL EGRNRQVRRMTA VGFPTLRL+R Sbjct: 155 NPPIRYRASIPTSWLSITLTEGRNRQVRRMTAAVGFPTLRLVRVQIQVTGRSPQQGKGKS 214 Query: 198 -AMGDYSLDNLANGEWREVT 216 A +L+ L+ G+WR +T Sbjct: 215 AATWCLTLEGLSPGQWRPLT 234 >UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XK09_SYNP2 Length = 223 Score = 177 bits (449), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 95/183 (51%), Positives = 122/183 (66%), Gaps = 8/183 (4%) Query: 42 ILFNKPYDVLPQFTDEA----GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 +L +KPY+VL QFTD + R+TLK+F+PV +Y+ GRLD DSEGLL+LTN+ L+ Sbjct: 6 VLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAPLKHY 65 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 L +P + Y+VQVE IP ALE LR GV + T PA A L+ + R PPI Sbjct: 66 LCEPKFAHSRTYWVQVENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAREPPI 125 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG----DYSLDNLANGEWR 213 R RK++PT+WL++TL EGRNRQVRRMTA VG PTLRL+R A+G +L L GEWR Sbjct: 126 RFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTLRLMRVAIGAGPAKLTLTGLGPGEWR 185 Query: 214 EVT 216 +T Sbjct: 186 HLT 188 >UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales RepID=A2S4Y2_BURM9 Length = 235 Score = 176 bits (447), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 101/212 (47%), Positives = 133/212 (62%), Gaps = 8/212 (3%) Query: 12 QKT--SFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 QKT S ++ F+ +R RR E P R+I NKP+ + QF+ R +L + Sbjct: 11 QKTRRSVLCIKIPPFAIERGPRRAAPLPREPCPMRLIALNKPFGTICQFSAHETRASLGD 70 Query: 66 FIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL 125 ++ GVY AGRLD DSEGLL+LT++GALQA++ +P + K Y+ QVEG P AL AL Sbjct: 71 WVKTPGVYPAGRLDADSEGLLLLTDDGALQAKIAEPRHKLVKRYWAQVEGAPDAAALAAL 130 Query: 126 RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTA 185 GV L D + P A + P LWPRNPPIR R +IPT+W+++ + EG+NRQVRRMTA Sbjct: 131 ERGVDLGDYVSRPCRARFITPPGALWPRNPPIRHRAAIPTAWIELEIAEGKNRQVRRMTA 190 Query: 186 HVGFPTLRLIRYAMG--DYSLDNLANGEWREV 215 VGFPTLRL+R +G D LA GE RE+ Sbjct: 191 AVGFPTLRLVRVGIGALDVFALGLAPGETREL 222 >UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5INL2_9CHRO Length = 243 Score = 173 bits (439), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 103/193 (53%), Positives = 125/193 (64%), Gaps = 12/193 (6%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNN 91 P ++PT +LF+KPY VL QFT E G + L +FI V GVYAAGRLD DSEGLL+LT N Sbjct: 9 PASRPT-TLLFHKPYGVLSQFTPEPGSRWRCLADFIAVPGVYAAGRLDADSEGLLLLTAN 67 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQ--DALEALRNGVTLNDGPTLPAGAELVDEPAW 149 G LQ RLT P + Y+VQVEG Q +AL+ LR GV + T PA + +P Sbjct: 68 GRLQQRLTDPAFGHWRTYWVQVEGEAGQRPEALQQLRQGVVIQGRLTRPALVRCLSDPK- 126 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM------GDYS 203 L R+PPIR+R +IP SWL++ L EGRNRQVRRMTA VG PTLRLIR A+ S Sbjct: 127 LPERDPPIRQRATIPVSWLELQLQEGRNRQVRRMTARVGLPTLRLIRVAIDLMDGEAPLS 186 Query: 204 LDNLANGEWREVT 216 L L G+WR V+ Sbjct: 187 LSGLKPGDWRRVS 199 >UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria RepID=A0Z1Z6_9GAMM Length = 208 Score = 169 bits (428), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/175 (50%), Positives = 115/175 (65%), Gaps = 4/175 (2%) Query: 41 VILFNKPYDVLPQFTD---EAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 +IL NKP+ VL QF+D + R TL + AGRLD DSEGL +LT++G LQ + Sbjct: 26 IILLNKPFRVLSQFSDRDNDPPRLTLANLLSAPEFRVAGRLDYDSEGLTLLTDDGKLQQQ 85 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 + P + K Y+VQVEG P Q A+E L +GV LNDG T PA +D P LW R+P + Sbjct: 86 IANPKFKVWKTYWVQVEGAPKQQAIEQLTSGVVLNDGLTKPAKVRAIDPPD-LWERSPSV 144 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 R R IP +WL+I++ EGRNRQ+RRMTA V PTLRL+R A+GD+ + NL GE+ Sbjct: 145 RFRAHIPDAWLEISIQEGRNRQIRRMTAAVNLPTLRLVRIAIGDWEIGNLQPGEY 199 >UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1ZYI5_OPITP Length = 188 Score = 168 bits (425), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 2/178 (1%) Query: 41 VILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 + +KPY VL QFT E G + TL EF VY GRLD DSEGLL+L++ L RL Sbjct: 2 LCALHKPYGVLSQFTPEPGSRWRTLAEFGLPPAVYPLGRLDADSEGLLLLSDEPGLNTRL 61 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + + Y+VQVE +PT AL L+ GV + D T P A +D L PR+PPIR Sbjct: 62 LNPDQAHRREYWVQVERVPTDAALAQLQRGVKIGDYATRPCAARRLDPAPTLPPRDPPIR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RK++P WL + L EG+NRQVRRMTA +G PTLRL+R +GD++L LA G+WRE+T Sbjct: 122 ARKNVPDCWLALELIEGKNRQVRRMTAAIGHPTLRLVRVRIGDFALGKLAVGQWRELT 179 >UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2ULL1_AKKM8 Length = 188 Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 41 VILFNKPYDVLPQFTDEA-GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ FNKPY +L QFT EA +TL EF GVY GRLD DSEGLL+L++ L RL Sbjct: 2 ILAFNKPYGILSQFTKEAPHHRTLAEFGFPPGVYPVGRLDADSEGLLLLSDEKGLADRLL 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALR-NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P R + Y+ QVEG P++ L L G+ + TLP A L+ + PR PP+R Sbjct: 62 NPSGRHPRTYWSQVEGTPSETDLRPLELGGLRIRGHCTLPCRARLMRREPDVPPRIPPVR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R SIPTSWL++TL EG+NRQVRRMTA +GFPTLRL+R +G++SL L G W+E+ Sbjct: 122 YRASIPTSWLELTLVEGKNRQVRRMTAAIGFPTLRLLRARIGNFSLAGLKPGAWKEL 178 >UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=B2T6J8_BURPP Length = 189 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/168 (48%), Positives = 111/168 (66%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ NKP+ + QF+ R +L +++ V VY AGRLD DSEGLL+LT++GALQAR+ Sbjct: 2 HLLALNKPFGTICQFSPHETRASLADWVKVPDVYPAGRLDSDSEGLLLLTDDGALQARIA 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 +P + K Y+ QVEG L+ L GV L D T P AE V+ LW R PPIR Sbjct: 62 EPRHKLVKRYWAQVEGAVDAATLKKLARGVDLGDYVTRPCRAEYVEPTDALWTRTPPIRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNL 207 R +IPT+W+++++ EG+NRQVRRMTA VGFPTLRL+R +G + +L Sbjct: 122 RAAIPTTWIELSITEGKNRQVRRMTAAVGFPTLRLVRVGIGALDIFSL 169 >UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=Q3AI58_SYNSC Length = 230 Score = 160 bits (406), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 95/187 (50%), Positives = 115/187 (61%), Gaps = 12/187 (6%) Query: 41 VILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKPY VL QFT E G + L +F+ V VYAAGRLD DSEGLL+LT+NG LQ RL Sbjct: 18 TLLLNKPYGVLSQFTSEEGSRWRCLSDFVDVPQVYAAGRLDADSEGLLILTSNGRLQQRL 77 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV---DEPAWLWPRNP 155 T P + Y+ QVEG P + L+ L +GV + TLPA A + D P L R P Sbjct: 78 TDPRFGHWRSYWAQVEGTPNTEQLQQLCDGVVVQGRRTLPAKARWLQGQDLPQ-LPERTP 136 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG------DYSLDNLAN 209 IR R +IPT+WL+++L EGRNRQVRRMTA VG PTLRL+R + L L Sbjct: 137 QIRFRAAIPTNWLQLSLSEGRNRQVRRMTAAVGLPTLRLVRCCIDLMDNGPPLDLTGLQP 196 Query: 210 GEWREVT 216 G WR VT Sbjct: 197 GSWRTVT 203 >UniRef50_C6W5I1 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W5I1_DYAFD Length = 201 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 86/169 (50%), Positives = 112/169 (66%), Gaps = 7/169 (4%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKE--FIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 L KP+++L QF+ E +TL + F + +Y GRLD DSEGLL+LTN+ L+ +L Sbjct: 5 FLIYKPFNMLSQFSREGDHQTLADLGFTFAKDIYPVGRLDADSEGLLLLTNDNFLKTKLL 64 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG----PTLPAGAELVDEPAWLWPRNP 155 +P R + YYVQVEG T +A L GV+++ TLPA + EP L RNP Sbjct: 65 EPRNRHTRTYYVQVEGEVTDEACRQLSAGVSISINGKQYKTLPAEIAKIAEPE-LPERNP 123 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 PIR RK+IPTSWL +TL EG+NRQVRRMTA VGFPTLRL+R+++G SL Sbjct: 124 PIRFRKNIPTSWLSVTLREGKNRQVRRMTAAVGFPTLRLVRWSIGKISL 172 >UniRef50_A5GM98 Pseudouridine synthase n=3 Tax=Synechococcus RepID=A5GM98_SYNPW Length = 171 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 84/152 (55%), Positives = 99/152 (65%), Gaps = 8/152 (5%) Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 +YAAGRLD DSEGLL+LT NG LQ RLT P + Y+VQVEG+ L AL GV + Sbjct: 1 MYAAGRLDADSEGLLILTENGRLQQRLTDPRFGHWRTYWVQVEGLADHGHLAALEQGVVI 60 Query: 132 NDGPTLPAGAELVDEPAW--LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 T PA A +D W L R PPIRER++IPTSWL I+L EGRNRQ+RRMTA VG Sbjct: 61 KGQRTRPARATSLDSSFWFDLPERTPPIRERRTIPTSWLSISLREGRNRQIRRMTAAVGL 120 Query: 190 PTLRLIRYAMG------DYSLDNLANGEWREV 215 PTLRLIR ++ SL+ LA G+WR V Sbjct: 121 PTLRLIRRSIDLMDGGPPLSLEGLAPGQWRPV 152 >UniRef50_C8PVP6 RNA pseudouridine synthase family protein n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVP6_9GAMM Length = 234 Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 110/185 (59%), Gaps = 12/185 (6%) Query: 41 VILFNKPYDVLPQF--TDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +ILFNKPY VL QF D TL ++ + + AGRLD SEGLL+LT +G + L Sbjct: 4 LILFNKPYGVLSQFRSDDNNNFATLSDYFTDKSLRVAGRLDATSEGLLLLTADGQVNKAL 63 Query: 99 TQP-----GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEP---AWL 150 T P GK+ GK Y++QVEG + L+ L+ GV L DG TLPA + E + Sbjct: 64 THPPKANAGKQQGKTYWIQVEGDASDAQLQQLQTGVPLKDGITLPAEVVRLSEAQIAEHI 123 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 W + I +RK T+WL IT++EG+NRQVRRM AHVG P LRLIR A +SL NL G Sbjct: 124 WQASDKIAKRKV--TTWLAITIFEGKNRQVRRMAAHVGLPCLRLIRMASSGFSLGNLEVG 181 Query: 211 EWREV 215 ++ Sbjct: 182 ASTQI 186 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 129 bits (323), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/177 (40%), Positives = 98/177 (55%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L NKP + +DE RKT+ + + Q VY GRLD DSEGLL+LTN+G L LT Sbjct: 66 LLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQALT 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y +V+GIP + L+A+ G+ L DGPT PA L Sbjct: 126 HPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDN---------- 175 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + L+I+++EGRNRQVRRM H+G+ LRL R +G L +L +GE R +T Sbjct: 176 -----RALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALT 227 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 99/184 (53%), Gaps = 15/184 (8%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLT 89 R +NQ ILFNKP V+ +D GR+ + +F+ + VY GRLD D+EGLL+LT Sbjct: 55 RAIQNQEKIYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILT 114 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 N+G +T P K Y+ V+G+P LE LR GV L DG T PA E D Sbjct: 115 NDGEFANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHD---- 170 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 +P ++ S + IT+YEG+NRQVRRM VG+P RL R G L L Sbjct: 171 ---IDPDKKQ------SVISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVGLPR 221 Query: 210 GEWR 213 G++R Sbjct: 222 GKFR 225 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/183 (43%), Positives = 103/183 (56%), Gaps = 17/183 (9%) Query: 37 QP-TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGAL 94 QP R IL NKP VL DE GRKT+ + + VY GRLD+DSEGL++LTN+G L Sbjct: 61 QPKMRYILLNKPAGVLSTAKDERGRKTVIDLLGQSNRVYPVGRLDKDSEGLMLLTNDGEL 120 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 R+T P K Y V+VEG + +L+ L GV L DG + P A+++ Sbjct: 121 AQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIIS--------- 171 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 +S S L IT+ EGR RQVRR A +G+ RL R A+G SL NL GE+RE Sbjct: 172 ------RSRDKSKLLITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLGNLKPGEYRE 225 Query: 215 VTD 217 ++D Sbjct: 226 LSD 228 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 72/183 (39%), Positives = 99/183 (54%), Gaps = 15/183 (8%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGA 93 QP V++ NKP L +D GR+T+ + +P + VY GRLD D+ GLL+ TN+G Sbjct: 59 EQPV-VLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGE 117 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L RL P + K+Y V V GI ++ AL GV L DG T PA E++ + Sbjct: 118 LTQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQAD----- 172 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 + + + + ++EGRNRQVRRM +G P LRL R A G SL +L GEWR Sbjct: 173 -------REDGVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGHLKTGEWR 225 Query: 214 EVT 216 +T Sbjct: 226 ALT 228 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 121 bits (304), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/188 (34%), Positives = 103/188 (54%), Gaps = 19/188 (10%) Query: 34 PEN-QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLT 89 P+N + ++VIL NKP V+ D GRKT+ + +P +G++ GRLD+DS G L+++ Sbjct: 57 PKNIKSSKVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIIS 116 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 NNG L LT P K Y V + G+P+++ L+ RNG+ ++ T A +V Sbjct: 117 NNGLLTLHLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIVKRQG- 175 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 + L+I L+EGRNRQ+R++ +G P + LIR +G+ L+ L Sbjct: 176 --------------NNTLLEIVLFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKLNGLKE 221 Query: 210 GEWREVTD 217 G WRE+ + Sbjct: 222 GAWREINE 229 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 72/188 (38%), Positives = 100/188 (53%), Gaps = 23/188 (12%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV----YAAGRLDRDSEGLLVL 88 KPE P F KP V+ D GR T+++FI +G+ Y GRLD DSEGLL+L Sbjct: 58 KPE--PKVYYAFYKPRKVITALLDPQGRPTIRDFI--KGIKFRIYPVGRLDFDSEGLLLL 113 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN+G L ++ P + K Y V+V+GI + +E LR G+ + +P LV Sbjct: 114 TNDGELAYKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLV---- 169 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 +K SW+KITL+EGR RQ+R+M VG P +RLIR A+ L +L Sbjct: 170 -----------KKLKANSWIKITLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLGDLK 218 Query: 209 NGEWREVT 216 G+ R +T Sbjct: 219 PGQLRPLT 226 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 119 bits (298), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 100/176 (56%), Gaps = 16/176 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 + NKP +VL D+ GRKT+ + I + ++ GRLD ++ GL++LTN+G L R+ P Sbjct: 67 ILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDYNTSGLIILTNDGELFNRIIHP 126 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K YYV+V G ++ +E L+NGV L+DG TLPA ++ R+ Sbjct: 127 KAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRIL---------------RR 171 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + L + + EGRNRQVRRM + P + L R +G+ SL NL GE+RE+T+ Sbjct: 172 EKGKTELLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTN 227 >UniRef50_A3QB38 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3QB38_SHELP Length = 182 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/181 (41%), Positives = 101/181 (55%), Gaps = 9/181 (4%) Query: 43 LFNKPYDVLPQFTDEAGRKT--LKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + KPY L QF E ++ L E G+ A GRLD DSEGLL+LT +G + Sbjct: 1 MIFKPYGYLSQFVGERRKRKPLLGELANFPTGIMAIGRLDHDSEGLLLLTTDGKTSHAVR 60 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP----TLPAGAELVDEPAWLWPRNP 155 K K YY+Q++G T+ A+ +L GV + TLP A +D+ L PR Sbjct: 61 S--KSIEKEYYLQLDGEITEQAISSLCEGVEIGIKGEKYRTLPCRARRLDQAPDLPPRGR 118 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 IR+ + PTSWL IT+ EG+NRQ+R+MTA VGF TLRL+R +GD L L GE + + Sbjct: 119 KIRDARHGPTSWLAITITEGKNRQLRKMTAAVGFATLRLVRVRIGDIRLGTLQPGEVKSL 178 Query: 216 T 216 Sbjct: 179 A 179 >UniRef50_A6BL18 Pseudouridine synthase Rsu (Fragment) n=1 Tax=Leptolyngbya valderiana BDU 20041 RepID=A6BL18_9CYAN Length = 152 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 83/122 (68%) Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 Q RL P + Y+VQVE +P + +L+ LR+GVT+ T PA + L PR+ Sbjct: 2 QHRLLDPKFGKSRAYWVQVERVPDEASLQRLRDGVTIRQYRTRPARVRRLAIAPDLPPRH 61 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 PPIR RK++PT WL+++L EGRNRQVRRMTA VG PTLRL+R A+ + +LD L G+WR+ Sbjct: 62 PPIRFRKNVPTCWLEMSLTEGRNRQVRRMTAAVGHPTLRLVRVAVENLTLDALQPGQWRD 121 Query: 215 VT 216 +T Sbjct: 122 LT 123 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 65/183 (35%), Positives = 101/183 (55%), Gaps = 17/183 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGAL 94 QP R L NKP L D AGR+ + + P G ++ GRLD +SEGL+++TN+G L Sbjct: 80 QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDGEL 139 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 RL P R + Y+VQV G P ++ L+ LR GV +G +G + + Sbjct: 140 AQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYL---------- 189 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 +K +++L++TL+EG+NR++RRM A +G ++L+R G +L L GE R Sbjct: 190 -----KKQGKSAFLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRR 244 Query: 215 VTD 217 ++D Sbjct: 245 LSD 247 >UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepID=B9E1X9_CLOK1 Length = 245 Score = 115 bits (289), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 60/177 (33%), Positives = 94/177 (53%), Gaps = 16/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 IL NKP + D+ GRKTL + + V + VY GRLD ++ G ++LTN+G + + Sbjct: 72 ILLNKPRGYISSVKDDRGRKTLLDIVKVNERVYPIGRLDYNTSGAIILTNDGEVYNNIAH 131 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 PG KIY ++GIP+ + ++ NG+ + T A + + Sbjct: 132 PGSNKSKIYIAAIKGIPSSEEIKRFENGIDIGGYITAKAKFDFISSNK------------ 179 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +S +KI ++EG+NRQVR+M +G P + L+R A+GD L NL G WR +T+ Sbjct: 180 ---ESSKVKIEIHEGKNRQVRKMCDAIGHPVITLMRIAIGDIKLGNLKEGAWRYLTE 233 >UniRef50_A4BXB5 Pseudouridine synthase n=2 Tax=Bacteroidetes RepID=A4BXB5_9FLAO Length = 181 Score = 115 bits (288), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 76/180 (42%), Positives = 103/180 (57%), Gaps = 10/180 (5%) Query: 43 LFNKPYDVLPQFTDEAGRKT--LKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + +KP+ ++ QF + A RK L + +G A GRLD SEGLL+LT +G + A + Sbjct: 1 MVHKPWGMISQFVNPAKRKKTLLGDLYGFPEGTMAIGRLDVPSEGLLLLTTDGKVSAEIR 60 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN----DGPTLPAGAELVDEPAWLWPRNP 155 K YYVQV+GI T ALE L+ GV + T P A L+ +P + R+ Sbjct: 61 SNAYE--KEYYVQVDGIMTAAALENLKTGVEIGFKGTKYVTKPGKAMLLKDPRFPL-RSQ 117 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 IR+ + PTSW+ I + EG+ RQVR+MTA VGFPTLRL+R +G L LA G EV Sbjct: 118 KIRDERHGPTSWISIIIKEGKFRQVRKMTAAVGFPTLRLVRVRIGTMKLGELAIGAVVEV 177 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 21/185 (11%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV----YAAGRLDRDSEGLLVLTNNG 92 QP ++ NKP +V+ D GR T+K+ + GV + GRLD DSEGL++LTN+G Sbjct: 61 QPYVYLILNKPKNVMSTLDDPEGRPTVKDLL--HGVTVRVFPVGRLDFDSEGLMLLTNHG 118 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L L P K Y ++V+G+ +EAL GV L DG T PA + V Sbjct: 119 DLAQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVS------- 171 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 ++ SWL++T++EGR QV+RM VG ++L+R MG L +LA E+ Sbjct: 172 --------RAESNSWLEVTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLGDLAPREY 223 Query: 213 REVTD 217 R +TD Sbjct: 224 RFLTD 228 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 113 bits (283), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 94/176 (53%), Gaps = 18/176 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 I+ NKP D + D GRKT+ + I V+ VY GRLD DS GL++LTN+G L RL Sbjct: 64 IMLNKPKDYITSKDDPQGRKTVMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELANRLMH 123 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y V+V+ +P QD L+ L NG+ L +G E++D Sbjct: 124 PKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILD--------------- 168 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + LKI L EGR RQ+RRM A +G L R ++G +L +L+ G +R++T Sbjct: 169 --TKNNILKIILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLT 222 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/182 (39%), Positives = 96/182 (52%), Gaps = 18/182 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGA 93 Q RV L NKP V+ D GR T+ + +P Q G++ GRLD DS G L+LT+ G Sbjct: 61 QEPRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGE 120 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L RLT P K Y V V GIP+ AL R+G+ L+ T PA R Sbjct: 121 LTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPA-------------R 167 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +R R + +S L++ L EGRNRQ+RR+ +G P + L R A+ LD+LA G WR Sbjct: 168 VHCLRSRGA--SSLLEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWR 225 Query: 214 EV 215 + Sbjct: 226 RL 227 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 112 bits (280), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 17/187 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTN 90 P+ I+ +KP ++ +D GR+T+ + I G + GRLD +SEGL++LT+ Sbjct: 125 PQRSRDTAIILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTS 184 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRN-GVTLNDGPTLPAGAELVDEPAW 149 +G L L P + ++Y V+ GI LE +R GV L DGPT P E+V + Sbjct: 185 DGQLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPL--EIVLD--- 239 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 R R+ SW ITL EGRNR+VRR+ H G RL+R G SL NL Sbjct: 240 --------RGREQGNNSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLGNLEP 291 Query: 210 GEWREVT 216 G WR VT Sbjct: 292 GAWRPVT 298 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 19/193 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARL 98 I+ +KP + +D GR+T+ E +P + G++ GRLD D+ GLL+ + +G L L Sbjct: 74 IMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELGNGL 133 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE------------ 146 P K Y VEG PT+ L LR G+ L+DGPT PA +V+ Sbjct: 134 LHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHAERLLEI 193 Query: 147 PAWLWPRN----PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 PA + PR+ + E ++ S +++ + EGR RQV+RM A VG P L L R + G Sbjct: 194 PAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRDSFGPL 253 Query: 203 SLDNLANGEWREV 215 L +L G WR + Sbjct: 254 ELGDLPRGAWRAL 266 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 96/182 (52%), Gaps = 16/182 (8%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGAL 94 +P +L+ KP V+ D+ GRK + +F + +Y GRLD D+ GLL+LTN+G Sbjct: 59 EPVYFLLY-KPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDF 117 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 +L P K Y +++GIP ++ L+ L GV L DG T PA +L+ Sbjct: 118 ANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLD------- 170 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 K TS ++IT++EGRNRQVRRM +G L+L R +L L GE RE Sbjct: 171 ------KKKQTSIVQITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAGLKTGEKRE 224 Query: 215 VT 216 +T Sbjct: 225 LT 226 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 68/181 (37%), Positives = 98/181 (54%), Gaps = 21/181 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVY---AAGRLDRDSEGLLVLTNNGALQARL 98 ++ NKP DVL D + + + P + GRLD+D+EGLL+LTNNG L +L Sbjct: 69 LMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLAHQL 128 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPI 157 P K K YY V+G+ T++ + A GV L+DG TLP +++ Sbjct: 129 LSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKII------------- 175 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +S P S +++T+YEG+ QV+RM VG + L R +MG LD NL GE+RE+T Sbjct: 176 ---RSAPQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELT 232 Query: 217 D 217 D Sbjct: 233 D 233 >UniRef50_A8FRI1 Pseudouridine synthase n=17 Tax=Bacteria RepID=A8FRI1_SHESH Length = 218 Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 100/184 (54%), Gaps = 11/184 (5%) Query: 36 NQPTRVILFNKPYDVLPQFTDE--AGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNG 92 +QP KPY L QF E +K L E G A GRLD DSEGLL+LT +G Sbjct: 28 SQPHHHYKIFKPYGYLSQFVPERRKSKKLLAELALFPAGTMAIGRLDHDSEGLLLLTTDG 87 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP----TLPAGA-ELVDEP 147 + ++ K+ K YYVQV+G A+ L+ GV + TLP +L +EP Sbjct: 88 MVSHQVRS--KKVEKEYYVQVDGDIDDAAILKLQTGVEIGIKGEKYLTLPCKVFKLENEP 145 Query: 148 AWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNL 207 P R+ K P SW+ IT+ EG+NRQ+R+MTA GFPTLRL+R +G+ LD + Sbjct: 146 ELPSNGRKP-RDPKHGPMSWVSITIGEGKNRQIRKMTAAAGFPTLRLVRVRIGNIHLDRM 204 Query: 208 ANGE 211 +GE Sbjct: 205 QSGE 208 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 70/178 (39%), Positives = 97/178 (54%), Gaps = 11/178 (6%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L NKP L D+ GR+T+ + +P + VY GRLD ++EGLL++TN+GAL L Sbjct: 68 LLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLITNDGALMNGLL 127 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y+ V G T++ L+ LR+G+ L DG T PA L+ E R P R Sbjct: 128 HPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPE------REPGERV 181 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R + IT++EGRNRQVRRM A VG L R +L +A G+ R +T+ Sbjct: 182 R---GLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRALTE 236 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 79/178 (44%), Positives = 98/178 (55%), Gaps = 18/178 (10%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 L +KP + TD GRKT+ E +P + VY GRLD D+ GLL+LTN+G L RL Sbjct: 80 LLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHRLMH 139 Query: 101 PGKRTGKIYYVQV-EGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y V+V E IP Q AL+ L GV L DG T PA V P+ Sbjct: 140 PSYGVEKTYRVEVGEKIPEQ-ALKRLEKGVLLEDGKTAPARIREVS------PKG----- 187 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 R S+PT +IT++EGRNRQVRRM VGFP L R G LD +LA G +R ++ Sbjct: 188 RGSLPT--YEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLS 243 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 94/177 (53%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 IL +KP L D+ GR+T+ + +P +Y GRLD D+EGLL++TN+GA+ L Sbjct: 66 ILLHKPRGCLSTAYDDRGRRTVLDLLPHFPARLYPVGRLDADTEGLLIITNDGAMTQGLL 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K+Y +V G T+D L ALRNG+ L+DG T PA ++ E Sbjct: 126 HPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREG----------E 175 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R + T ++EGR RQVRRM A +G RL R +LD ++ G +R +T Sbjct: 176 RTVVET-----IIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFRHLT 227 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 108 bits (271), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 106/200 (53%), Gaps = 25/200 (12%) Query: 24 FSSQRSTRRKPENQPTRV-ILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGR 77 F S + K +N+P + +L NKP DVL D GRKT+ + +P +G++ GR Sbjct: 48 FLSVDGKQIKADNRPRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGR 107 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LDR+S G L+LTN+G L RLT P K Y V +EG P+ + LE R+G+ L+ TL Sbjct: 108 LDRNSTGALLLTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTL 167 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 PA E++ E + I L +TL EGRNRQ+RR+ +G L+L R Sbjct: 168 PATLEVISE------------NKDQI---HLLVTLTEGRNRQIRRLAEELGLTVLKLHRR 212 Query: 198 AMGDYSLDN----LANGEWR 213 +G L L +G++R Sbjct: 213 TIGPLQLHTRGKVLGSGQFR 232 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 97/187 (51%), Gaps = 17/187 (9%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEF---IPVQGVYAAGRLDRDSEGLLVLT 89 K E + L KP V+ D+ GRK + +F IP Q +Y GRLD D+ GLL+LT Sbjct: 54 KVEREEPVYFLLYKPRGVISAAQDDKGRKVVTDFFKNIP-QRIYPIGRLDYDTSGLLLLT 112 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 N+G +L P K Y +V+GIP ++ L L G+ L +G T PA A+L+ Sbjct: 113 NDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLD-- 170 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 K TS +++T++EGRNRQVRRM +G ++L R +L L Sbjct: 171 -----------KKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRGLHT 219 Query: 210 GEWREVT 216 G+ RE+T Sbjct: 220 GDARELT 226 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 100/188 (53%), Gaps = 13/188 (6%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVL 88 R+ +P +L KP + D GR+T+ I + VY GRLD DSEGL++L Sbjct: 58 RKVKTGRPRIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVIL 117 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN+G L ARLT P ++Y V+V G+P+Q A+++LR+GV +N T + + + Sbjct: 118 TNDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLK 177 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 KS + L++ + EGRNRQVR+M +G P +RL R +G +L Sbjct: 178 A-----------KSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLRDSSLK 226 Query: 209 NGEWREVT 216 G+ R +T Sbjct: 227 VGKHRLLT 234 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 22/190 (11%) Query: 35 ENQPTRV--ILF---NKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLV 87 ++QP R +++ NKP L D AGR + +P Q VY GRLD S+GLL+ Sbjct: 52 DDQPVRAEKLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVEQRVYTVGRLDEGSDGLLL 111 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEP 147 +TN+G L LT P K+Y+V V G PT D L+ L +GV L+DG A+ Sbjct: 112 MTNDGDLAQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAK----- 166 Query: 148 AWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNL 207 R + +W+++ L EG+NR++RRM A G +RL R A+G LD L Sbjct: 167 ----------RIKAQGNGTWVRVVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDKL 216 Query: 208 ANGEWREVTD 217 G+ R ++D Sbjct: 217 PKGKARRISD 226 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 95/178 (53%), Gaps = 17/178 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 I+ NKP + D+ GR + + + G +Y GRLD D+ GL++LTN+G RLT Sbjct: 66 IMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGDFTYRLT 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K+Y + G P ++ + G+ ++D T PA E+++ Sbjct: 126 HPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLN-------------- 171 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +K I T ++IT++EG+NRQVR+M +G L L R +G +L+NL G+WR ++D Sbjct: 172 KKGINT-LVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALENLPEGKWRHLSD 228 >UniRef50_C5KJS4 Pseudouridine synthase, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5KJS4_9ALVE Length = 267 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 70/166 (42%), Positives = 92/166 (55%), Gaps = 5/166 (3%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVY--AAGRLDRDSEGLLVLTNNGALQARLT 99 +L +KP + D R T+ + +P VY A+GRLD+D+ GLL+LTN+ LQ+ L Sbjct: 53 LLMHKPAGYVVSRDDPLNRDTVFQLLPDPSVYIGASGRLDKDTTGLLLLTNDTYLQSSLV 112 Query: 100 QPGKRTGKIYYVQVEGIPTQDA-LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + K+Y V V+G A L ALR+GV+L DGPTLPA E +D P + Sbjct: 113 DPVYKVPKVYRVVVKGAALNGAQLMALRSGVSLEDGPTLPALVEPLDVNGDPLPLE--MS 170 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 E L ITL+EGRNRQVRRM VG L R +G +SL Sbjct: 171 EYDRYKCKQLNITLWEGRNRQVRRMVEAVGSTVRDLCRIQLGPFSL 216 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 106 bits (265), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/175 (38%), Positives = 91/175 (52%), Gaps = 22/175 (12%) Query: 46 KPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 KP V+ D R T+ +FIP +Y GRLD SEGLL++TN+G L RLT P Sbjct: 94 KPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLITNDGELTQRLTHP 153 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K+Y+V + L+ + G+TL+DG LP PA +R Sbjct: 154 RYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLP--------PA-------KVRVLS 198 Query: 162 SIP---TSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 SI T+WL+ITL +G NRQ+RRM +G L+LIR G+ +L NL GE R Sbjct: 199 SITETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVR 253 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 96/183 (52%), Gaps = 16/183 (8%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGA 93 ++P R I+ +KP + DE GRKT+ + + V + V GRLDRDS GLL+LTN+G Sbjct: 63 HSEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGRLDRDSSGLLLLTNDGD 122 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L R+T P K Y V V+G P + EALR GV ++ P E + Sbjct: 123 LIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAI--------- 173 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R + ++ ++EGRNR +RR+ VG+P LRL R +G L +L G WR Sbjct: 174 ------RVEPQGTVYRVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLGDLPPGRWR 227 Query: 214 EVT 216 ++T Sbjct: 228 DLT 230 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 90/183 (49%), Gaps = 8/183 (4%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP VL +D G + +P G++ GRLD D+ G+L+ T NG + RL Sbjct: 88 LLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMGNRL 147 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPRNPP 156 P K Y +EG T ++ L G+ L DG T P + DEP +N Sbjct: 148 LHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTHLDKNHS 207 Query: 157 IRE--RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWR 213 + + R + +S ++ ++EGRN QV+RM +G P ++L R+ G L+ + G WR Sbjct: 208 LFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIPLGSWR 267 Query: 214 EVT 216 T Sbjct: 268 MCT 270 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 99/182 (54%), Gaps = 16/182 (8%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGAL 94 N+ + NKP +VL +D+ GRKT+ + I + ++ GRLD + GL++LTN+G L Sbjct: 58 NEEKVYFMLNKPLEVLSSSSDDRGRKTVVDLIKTDKRIFPIGRLDYMTSGLILLTNDGEL 117 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 R+ P K YY+++ G ++ ++ L+ GV L+DG TLPA + +N Sbjct: 118 FNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKI-----SGIKYDKN 172 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 TS I++ EGRNRQ+RRM + L L R +G+ +L +L G++RE Sbjct: 173 ---------KTSMF-ISIREGRNRQIRRMIEKFEYKVLMLRREKIGELALGDLPEGKYRE 222 Query: 215 VT 216 +T Sbjct: 223 LT 224 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 + +KP +V+ D GR T+ + + G +Y GRLD + G+L++TN+G L Sbjct: 65 VALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGDFANALL 124 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y ++V+G+ + D L R G+ L DG TLPA A L+ Sbjct: 125 HPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLL--------------- 169 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R +WL++TL EGRN+Q+RRM G+P +RL R S + L GEWR +T Sbjct: 170 RHEGDKTWLEVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVSSEGLRPGEWRALT 226 >UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR68_ACIBL Length = 254 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 66/176 (37%), Positives = 94/176 (53%), Gaps = 17/176 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAA--GRLDRDSEGLLVLTNNGALQARLTQ 100 + NKP ++ +DE GR+T+ +P + A GRLD+ SEGLL+LTN+ A++T Sbjct: 76 VVNKPRGLITTASDEKGRETIYSLLPPDSPWVAPVGRLDKASEGLLLLTNDSEWAAKITD 135 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y+VQV +P++ +EAL G+ +DG L L + L R Sbjct: 136 PNSHLDKTYHVQVSTLPSEQMVEALSRGIR-SDGELL-----LAKRVSIL---------R 180 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 WL+I L EG+NRQ+RRM A + LRLIR A+G +L L G R +T Sbjct: 181 AGGKNGWLEIVLEEGKNRQIRRMVAALQIEVLRLIRVAIGPLTLGELPKGGCRALT 236 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 103/187 (55%), Gaps = 18/187 (9%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLT 89 R +PE + R I+ NKP + +DE GR+T+ + + V + V AGRLDR + GLL+LT Sbjct: 55 RLRPERR--RYIMLNKPPGYITTVSDERGRRTVMDLVQVPERVVPAGRLDRPTAGLLLLT 112 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 N+G L R+T P K Y V V+G P + L+ LR GVT++ +P Sbjct: 113 NDGDLLFRITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVR------- 165 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 P+R ++ + L+I ++EGRNR VRRM VG+P L+L R +G + + Sbjct: 166 ------PLRIEEA--GTVLRIVIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRGVPL 217 Query: 210 GEWREVT 216 G WR++T Sbjct: 218 GAWRDLT 224 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 67/173 (38%), Positives = 91/173 (52%), Gaps = 17/173 (9%) Query: 46 KPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGK 103 KP V+ D GR+T+ + + VY GRLDRD+EGLL+LTN+G L RLT P Sbjct: 73 KPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAFRLTHPRF 132 Query: 104 RTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSI 163 K Y ++ G + AL+AL GV L DG T PA L+ R+ Sbjct: 133 GVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLL---------------RREG 177 Query: 164 PTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +W++I ++EGR RQ+RRM +G P + L R A G +L L GE R +T Sbjct: 178 DATWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGKLKPGEVRPLT 230 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 89/174 (51%), Gaps = 17/174 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L +KP + D GR+ + E + G ++ GRLD +SEGLL+LTN+GA RL Sbjct: 66 VLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANRLM 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y+V+V G ++ L +GV L DGPT L+ Sbjct: 126 HPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLL--------------- 170 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 + WL +T+ EGRNRQVRRM A VG +RL R G+ +L L GE+R Sbjct: 171 KNDQSNDWLSVTIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYR 224 >UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID=B7L2Z9_METC4 Length = 320 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 94/179 (52%), Gaps = 18/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV---YAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP +L + D GRKT+ + + + GRLD SEGLL++TN+ RL Sbjct: 87 LLLNKPRGLLTTYGDPQGRKTVYDCLAGHDLPFLAPVGRLDCASEGLLLMTNDTRWAHRL 146 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K+Y+VQ++ P + L LR GV +DG L A + P + RN Sbjct: 147 LDPASNVDKVYHVQIDRRPDEALLTGLREGVA-HDGERLAAKSV---APLRVGERN---- 198 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +WL++ L EGRNRQ+RRM A G LRL+R A+G L ++ G +R +TD Sbjct: 199 -------AWLEVVLSEGRNRQIRRMMALNGAEVLRLVRVAVGGVRLGDVRKGAFRHLTD 250 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 103 bits (257), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 66/175 (37%), Positives = 93/175 (53%), Gaps = 18/175 (10%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQGV--YAAGRLDRDSEGLLVLTNNGALQARLTQ 100 + NKP VL D AGR + + +P Q V + GRLDR SEGL+V+TN+G L RL Sbjct: 80 MLNKPPGVLSTNFDPAGRTRVIDMVP-QDVRLFTIGRLDRASEGLIVVTNDGELANRLAH 138 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y V+V G P DA+ +R GV L +G P + +R Sbjct: 139 PRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSV---------------VMKR 183 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 K+ ++ L++ L EG+NR++RR+ A +G LRL R AMG L + G +RE+ Sbjct: 184 KNKQSTTLEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFREL 238 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 60/182 (32%), Positives = 88/182 (48%), Gaps = 6/182 (3%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ NKP L D GR T+ + +P G++ GRLD D+ GLL T +G + L Sbjct: 72 LMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQMAQEL 131 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K K Y V G PT++ L LR G+ L DGP PA E++ + + P Sbjct: 132 LHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISDDVKMKNLLAPQG 191 Query: 159 ERKS---IPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 K+ P + + +T+ EGR QV++M + L L R G L + GEWR + Sbjct: 192 LGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLTRVKEGEWRLL 251 Query: 216 TD 217 T+ Sbjct: 252 TE 253 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 98/187 (52%), Gaps = 22/187 (11%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEF---IPVQGVYAAGRLDRDSEGLLVLTNN 91 +NQ + KP + +DE GRKT+ E IP + +Y GRLD+DSEGLL++TN+ Sbjct: 78 KNQQLYYLALYKPRGYVTTASDELGRKTVMELVSDIPAR-LYPVGRLDKDSEGLLLMTND 136 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPAGAELV-DEPAW 149 GA +T P K+Y V V+ + + + +GV L+DG T+P +V DEP Sbjct: 137 GAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPGR 196 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 + +++TL EG+NR++RRM VG +RL R A G L L Sbjct: 197 ----------------TVMEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGMLKP 240 Query: 210 GEWREVT 216 G +RE+T Sbjct: 241 GTYRELT 247 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 18/179 (10%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGAL 94 P + NKP ++ D GR+ + + +P + G++ GRLD+D+ GLL+ + +G L Sbjct: 109 PAVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNL 168 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 L P K+Y +EG Q ALE L +G+ L+DG T PA +V Sbjct: 169 GNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVV---------- 218 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 + S +++ L+EGR QV+RM VG P ++L R + G L LA G +R Sbjct: 219 -----QAGKKHSVIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYR 272 >UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIA3_BDEBA Length = 265 Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 15/189 (7%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVL 88 RKP Q IL NKP VL D R T+ E++ PV+ V+ GRLD DSEG+L+L Sbjct: 36 RKPLTQKIYAIL-NKPTGVLTTMDDPHDRPTVAEYLTELPVR-VFPVGRLDWDSEGMLLL 93 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN+G ++ P K Y V++ G P LE L+ GV++ G E + + Sbjct: 94 TNDGDFANKVMHPKAEVTKTYLVKLNGKPEPFQLEKLKKGVSIVGGKVSARHIEKIKKTG 153 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 + KS W KI + EG+NRQ+R+M A +GF +RL R A+G + + Sbjct: 154 ----------DNKSEKYEWYKIVITEGKNRQIRQMFAKIGFDVMRLQRVAIGRLRMGAVK 203 Query: 209 NGEWREVTD 217 GE + D Sbjct: 204 TGELVYLND 212 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 70/193 (36%), Positives = 101/193 (52%), Gaps = 23/193 (11%) Query: 29 STRRKPENQPTRVI-LFNKPYDVLPQF---TDEAGRKTLKEFIPVQGV----YAAGRLDR 80 + R +P ++V + NKP V+ DE GR T+ + GV Y GRLD Sbjct: 79 TVRGEPIQAESKVYYVLNKPDGVVSSAAGSVDERGRPTVISLL--HGVSERLYPVGRLDF 136 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAG 140 S G+L+LTN+G L LT P K Y+V+ +G T++ + LR+GV L+DG Sbjct: 137 HSRGVLLLTNDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPV 196 Query: 141 AELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 AEL A+ R++ W +I + EG NRQ+RRM +G P L+LIR A+G Sbjct: 197 AELF---AF----------RETATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIG 243 Query: 201 DYSLDNLANGEWR 213 D + D + GE+R Sbjct: 244 DITADGVPEGEFR 256 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 98/174 (56%), Gaps = 21/174 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 ILF+KP + T + +T+ EF+P ++G++ GRLD+D+EGLL++T++G R+ Sbjct: 62 ILFHKPSGYVTS-TKDPHSETIMEFLPPLKGIFPVGRLDKDAEGLLIITSDGDFAHRVIS 120 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y V+VEG T+D +E L+NGVTL DG A A+ V++ Sbjct: 121 PKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDG--FFAKAKCVEK-------------- 164 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWR 213 + LKI + EG+ Q++RMT VG T+ L R +G L +++ GE+R Sbjct: 165 --LSNDTLKIVITEGKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYR 216 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 104/192 (54%), Gaps = 20/192 (10%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP V+ D+ R T+ + I + ++ AGRLD+D+EGLL++TN+G L RL Sbjct: 66 MLNKPAGVVSATEDKKER-TVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAHRLL 124 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND-GPTLPAGAELVDEPAWLWPRNPPIR 158 P K KIYY +++GI T++ + GV + D PT+PA E++ R I+ Sbjct: 125 SPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKPTMPAALEIL--SVQKERRKEKIK 182 Query: 159 ERKSIPT------------SWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD- 205 E+K +P S + +T+ EGR QV+RM VG + L R G +LD Sbjct: 183 EQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTLDP 242 Query: 206 NLANGEWREVTD 217 +L G++R++T+ Sbjct: 243 SLKPGQYRKLTE 254 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 100 bits (249), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 91/179 (50%), Gaps = 23/179 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTL---KEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 I+ NKP DV+ DE R L +E + G++ GRLD+D+EGLLVLTN+G + L Sbjct: 63 IMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMAHEL 122 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K K YYV+++ +++ L NGV L T PA E + E Sbjct: 123 LSPKKHVPKRYYVELKKTLSKEEAAILENGVELETFTTKPAKVEFITE------------ 170 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 + I + EG+ QV+RM VG L L R MG+ LD NLA GE+RE+T Sbjct: 171 -------DKVYIIISEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELT 222 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 100 bits (249), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 64/174 (36%), Positives = 86/174 (49%), Gaps = 17/174 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV--YAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ NKP + +D R + +P GV + GRLD DSEGLL+LTN+G R+ Sbjct: 66 VMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGGFAQRVQ 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P R K Y V++ G L+ G+ L DG P DE A L NP Sbjct: 126 HPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAP------DEVA-LEEINP---- 174 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +SWL + + EGRNR +RR +G LRLIR A+ D L NL G++R Sbjct: 175 ----KSSWLTMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHLGNLREGDYR 224 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 17/182 (9%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTL-KEFIPVQGVYAAGRLDRDSEGLLVLTNNGAL 94 +Q +R+ ++ KP ++ D RKT+ ++ + V + GRLD +SEGLL+LTNNG L Sbjct: 58 SQKSRLWIYYKPVGLITTHKDPLSRKTVFEQLTGLPRVISIGRLDLNSEGLLLLTNNGDL 117 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 + P + ++Y+V+ G P P L + + ++ + Sbjct: 118 ARQFELPSSKLKRVYHVRAYGNP----------------DPLLKSNYKNLEIDGIFYNPQ 161 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 RK+ SWL++ L+EG+NR++RR+ H G +LIR GD+ LDNL E+RE Sbjct: 162 SIKLLRKNSTNSWLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKLDNLKPNEYRE 221 Query: 215 VT 216 VT Sbjct: 222 VT 223 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 21/179 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 IL NKP L D+ GRKT+ + +P +Y GRLD D+EG+L++TN+GA+ L Sbjct: 66 ILLNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGAITQGLL 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K+Y+ +V G T+ L LR G+ L DG T A ++ Sbjct: 126 HPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRIL--------------- 170 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVG--FPTLRLIRYAMGDYSLDNLANGEWREVT 216 R + ++ ++EGRNRQVRRM A +G LR +R+AM +L L+ G +R +T Sbjct: 171 RADKGYTVVETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAM--LTLRGLSCGSFRHLT 227 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 94/178 (52%), Gaps = 17/178 (9%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + LF KP ++ D + TLK+F P + + GRLD SEG+L+LTNNG L R+ Sbjct: 80 LFLFYKPKGIVSTLHDPDEKTTLKDFFPQINPLIHVGRLDIQSEGVLLLTNNGDLAQRIL 139 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + Y V+V+G+ + L+ LR+G V L+ P P E + Sbjct: 140 HPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELE---------------Q 184 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ER + SW +ITL EGRNR+VRR+ + + L+L R A G+ L L GE+R VT Sbjct: 185 ERLTETNSWYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAGLEPGEYRLVT 242 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 94/181 (51%), Gaps = 15/181 (8%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-----VYAAGRLDRDSEGLLVLTNNGAL 94 R + NKP + +D GR T+ EF +G +Y GRLD SEGLL++TN+GAL Sbjct: 85 RYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLMTNDGAL 144 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 LT+ K+Y V+V G PT++ LE +R G+ ++ G P ++ PA Sbjct: 145 ANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRG--RPGEGRVMTAPAG----- 197 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 +R + W ++TL EGRNR++R+M G ++ R G LD + GE RE Sbjct: 198 --VRMVRDAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVLD-VEPGEVRE 254 Query: 215 V 215 + Sbjct: 255 L 255 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 99.8 bits (247), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 66/181 (36%), Positives = 92/181 (50%), Gaps = 22/181 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQ--GVYAAGRLDRDSEGLLVLTNNGALQA 96 IL NKP+D + DE GR+T+ + I P Q G++ GRLDR++ G+L+LTN+G L Sbjct: 72 ILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDGELAN 131 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 RL P R KIY + + E LR GV L DGP A V + P +P Sbjct: 132 RLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGP-----ARAVQ--VAVNPADP- 183 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + + +YEGRNRQVRRM +G ++L R + + G+WR +T Sbjct: 184 ---------HEIALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKGVRPGKWRRLT 234 Query: 217 D 217 D Sbjct: 235 D 235 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 15/176 (8%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 L NKP V+ +D+ GRKT+ E +P + +Y GRLD D+ G+L+LTN+G + Sbjct: 63 LLNKPRGVISSVSDDKGRKTVVELLPQVKERIYPVGRLDWDTSGILILTNDGDFTDEMIH 122 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K+Y +V+G+ ++ L L G+ + T PA E++ + P + R Sbjct: 123 PRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEII--------KVDPAKNR 174 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 S +++T++EGRN QV++M VG +L R G L L GE+R+++ Sbjct: 175 -----SVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLS 225 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 99.4 bits (246), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 92/179 (51%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP L TD R T+ E++ P + V GRLD SEG+L+LTN+G L ARL Sbjct: 67 VLLNKPKGCLTAVTDPENRPTVMEYLHGLPAR-VVPVGRLDFYSEGVLLLTNDGDLSARL 125 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPI 157 P K Y+V+V T+ LE LR GV L DG T PA +D R+ Sbjct: 126 QSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPA---QIDMLGGTKSRH--- 179 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 WL ITL EG++RQ+ RM +G+ ++L R A G + L G+ RE+T Sbjct: 180 --------DWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELT 230 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 99.0 bits (245), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 21/185 (11%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGA 93 EN IL NKP DV+ +DE RKT+ E + ++ V+ GRLDRD+ G+L+LTN+G Sbjct: 99 ENTQKIYILLNKPKDVVTTSSDEKSRKTVVELVGLKDRVFPVGRLDRDTTGVLLLTNDGD 158 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLW 151 L RLT P K Y ++ T L+ ++ G L D P A ++D+ +W Sbjct: 159 LTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYTIW 218 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 + ++EG+N Q+ RM G+ +L+R A G + + GE Sbjct: 219 ------------------VAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGE 260 Query: 212 WREVT 216 WR +T Sbjct: 261 WRFLT 265 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 91/177 (51%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAA--GRLDRDSEGLLVLTNNGALQARLT 99 IL KP L + D GR T+ + G + + GRLD D+ GLLVLTN+ R+T Sbjct: 76 ILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAERIT 135 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y ++ + + + +E LR GV L+DGPT PA + R Sbjct: 136 NPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVK---------------RL 180 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R ++L++T+ EGRNRQVRRM V +L+R A+G + L G+WR +T Sbjct: 181 RDGPKHTFLEMTITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGELPIGKWRNLT 237 >UniRef50_C8N9M2 RNA pseudouridine synthase family protein n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N9M2_9GAMM Length = 141 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 51/93 (54%), Positives = 66/93 (70%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +IL NKP++VL QFTD++GR TL +++ V VY AG LD DSEGL+VLT++G LQAR+ Sbjct: 30 LILLNKPFNVLCQFTDKSGRATLADYVDVPNVYPAGLLDFDSEGLVVLTDDGRLQARIAD 89 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLND 133 P + K Y+VQVEG + AL LR GV L D Sbjct: 90 PRFKLAKRYWVQVEGEADEAALVQLRAGVWLKD 122 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 96/187 (51%), Gaps = 23/187 (12%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNN 91 PE +PTRV ++KP ++ DE GR T+ + +P + V + GRLD SEGLL+LTN+ Sbjct: 85 PEPEPTRVWRYHKPDGLVTTARDEKGRPTVFDNLPPELPRVVSVGRLDLTSEGLLLLTND 144 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND---GPTLPAGAELVDEPA 148 GAL L P + Y V+V G P + + L G+ + GP +VD Sbjct: 145 GALARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPI----ETVVD--- 197 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 R +WL ++L EGRNR+VRR+ H+G P RLIR A G + L L Sbjct: 198 -----------RSVGANTWLTVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGKLE 246 Query: 209 NGEWREV 215 G+ EV Sbjct: 247 PGQVEEV 253 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 16/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 ++ +KP V+ D GR T+ + + + Q ++ GRLD DSEGLL+LT++G L +LT Sbjct: 67 VMLHKPAGVVSTTDDPQGRPTVIDLVNLEQRLFPVGRLDYDSEGLLLLTDDGELTQKLTH 126 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P + K Y V + P+ AL A R GV L+ T PA EL++ Sbjct: 127 PSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIE--------------- 171 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++ +W+++ L+EGR RQ+R + +G+ RLIR G +L +L +G WR +TD Sbjct: 172 RTPDGAWVRVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLGDLPSGTWRFLTD 228 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 19/178 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L NKP + D GR + I P ++ GRLD D+EG L+LTN+G L + Sbjct: 66 VLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGELAQNIL 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P ++ + Y+ V+G P ++AL+ LR G+ L T PA IRE Sbjct: 126 HPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPAR----------------IRE 169 Query: 160 -RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R++ ++ L++ ++EGR RQVR+M A + P L+L R A G L +L G +R ++ Sbjct: 170 LRRNQESTTLEVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGSLPTGRYRRLS 227 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 97.8 bits (242), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 98/179 (54%), Gaps = 22/179 (12%) Query: 38 PTRV-ILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQ 95 P +V ILF KP + T + +T+ EF+P ++G++ GRLD+D+EGLL++TN+G Sbjct: 57 PEKVYILFYKPAGYVTS-TRDPHSETIMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFA 115 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 R+ P + K Y V+VEG T+D LE LR GV+L DG A A+ V++ Sbjct: 116 HRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDG--FFAKAKHVEK--------- 164 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWR 213 I +KI + EG+ QV+RM A VG T+ L R +G L + GE+R Sbjct: 165 -------ISNDTVKIVITEGKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYR 216 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 98/206 (47%), Gaps = 32/206 (15%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-----GVYAAG 76 K S+QR R +L NKP V+ D GRKT+ + +P + G++ G Sbjct: 80 KSVSAQRHHR-------LTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVG 132 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLD S G L+LTN+G L +LT P K Y + V+G P + L+ R GV L+ T Sbjct: 133 RLDAYSTGALILTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKT 192 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 A L++ A S L+I L EGRNRQ+RR+ +G+P ++L R Sbjct: 193 RKAKVSLLESLA---------------EKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHR 237 Query: 197 YAMGDYSLDN-----LANGEWREVTD 217 A+G L L G +R + D Sbjct: 238 TAIGSIQLQTSKQPLLRAGNYRILRD 263 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 97.4 bits (241), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 17/178 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP + D+ RK + + +P + +Y+ GRLD DSEGL+ LTN+G LT Sbjct: 64 VALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEFSLHLT 123 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P R K Y VEG Q+ L+ ++G+ +++G L VD L +N Sbjct: 124 HPRYRVLKKYLATVEGRVEQEMLQRFKHGI-VHEGEKLK-----VDRARTLSVQN----- 172 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 TS +++ L EG+NR++RR+ G RL+R +G L L +G+WR +T+ Sbjct: 173 ----STSLVELELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRMLTE 226 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 95/204 (46%), Gaps = 36/204 (17%) Query: 30 TRRKPENQPTRV------------ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYA 74 T +PEN V I+ NKP D + T++ KT+ + IP ++ Sbjct: 39 THIEPENDKITVRGELIEYIENVYIMLNKPKDYISA-TEDHHSKTVIDLIPEYQHLNIFT 97 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 GRLD+D+EGLL++TN+G L P K K Y V T+D ++A + GVTL+DG Sbjct: 98 VGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDG 157 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 PA +D +T+YEG+ QV+RM + L L Sbjct: 158 KVKPAILTYIDNQTS-------------------HVTIYEGKYHQVKRMFHSIQNEVLHL 198 Query: 195 IRYAMGDYSLD-NLANGEWREVTD 217 R + D LD NL +GE+R +T+ Sbjct: 199 RRIKIADLELDSNLDSGEYRLLTE 222 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 97.1 bits (240), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 64/183 (34%), Positives = 89/183 (48%), Gaps = 18/183 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEA-GRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGA 93 Q R I+ NKP L Q GRKT++E I + V+ GRLD ++EGLL+LTN+G Sbjct: 61 QRKRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLILTNDGE 120 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L R+ P + K+Y VEG Q L+ ++ G+ L DG P +V Sbjct: 121 LANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIV--------- 171 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R + L+IT +EGR V+R G RL R A+G L L+ G+WR Sbjct: 172 ------RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGKLSPGKWR 225 Query: 214 EVT 216 E+ Sbjct: 226 ELN 228 >UniRef50_A9BF27 Pseudouridine synthase n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BF27_PETMO Length = 220 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 60/178 (33%), Positives = 95/178 (53%), Gaps = 21/178 (11%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLV 87 ++K EN+ L NKP +L F D+ GRKT+ + I + V+ GRLD DS GLL+ Sbjct: 34 QKKAENKV--YYLLNKPKGILCTFKDDFGRKTINDLIKGKIEERVFYVGRLDYDSSGLLL 91 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPAGAELVDE 146 LTN+G L L +P + K+Y V V+G P++ L+ L G+TL G T+ + +++ Sbjct: 92 LTNDGDLANYLLRPENKVTKVYEVLVKGSPSKKELQMLEEGITLETGYKTMKSKVKIL-- 149 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 +K S L+I+L EG+ RQ++ M +G+ + L R G +S+ Sbjct: 150 -------------KKQKDLSLLQISLNEGKKRQIKLMIKALGYKVIELKRIKFGPWSI 194 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 66/178 (37%), Positives = 83/178 (46%), Gaps = 21/178 (11%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRK-TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQ 95 Q + L KP + DE GR+ L P+ G++ GRLD+DSEGLL+LT +G L Sbjct: 63 QESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLHPVGRLDKDSEGLLLLTTDGQLT 122 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 LT P K Y G P L L G+ L DGP A Sbjct: 123 LTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSAR------------- 169 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 P R +TL EGRNRQVRRM +G+P RL+RY +G L +L GE+R Sbjct: 170 PAR-------GGALVTLTEGRNRQVRRMLDAIGYPVHRLLRYRVGGLWLGDLEPGEYR 220 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 PE + R+ L+ KP ++ +DE GRKT+ + +P + V GRLD +SEGLL+LTN+ Sbjct: 116 PEAEAPRLWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTND 175 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G ++ +L P + Y V++ G P + LR GV ++ P L Sbjct: 176 GGVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISL-------- 227 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 +R+ +WL I L EG+NR++RR VG+P RL+R + G + L L GE Sbjct: 228 -------DRQQGANAWLTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQLGTLKEGE 280 Query: 212 WREV 215 E+ Sbjct: 281 VEEL 284 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 96.7 bits (239), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 91/179 (50%), Gaps = 21/179 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP D + DE RKT+ + + + +Y GRLDR++ GLL+ TN+G L +L Sbjct: 390 VLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQKL 449 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 T P + KIY V+++ T + + + +G + L DGP VDE A + P Sbjct: 450 THPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPV------KVDEAAIISP----- 498 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + I ++EGRNR VRR+ +G+ L+L R + N+ G WR +T Sbjct: 499 ------SKKIIGIEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLT 551 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 96.7 bits (239), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 89/183 (48%), Gaps = 20/183 (10%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLLVLTN 90 N+ + NKP + +DE GR + + + Q ++ GRLD D+EGLL+LTN Sbjct: 137 NEDLEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTN 196 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L RL P K Y V G T + ALR+GV L DGP A+++D Sbjct: 197 DGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIID----- 251 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 + + KS+ L+I ++EGR VRR+ +GFP RL+R + L + G Sbjct: 252 ------VFQGKSL----LRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLGDQKPG 301 Query: 211 EWR 213 R Sbjct: 302 SLR 304 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 21/191 (10%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVY-AAGRLDRDSEGLLVLTNN 91 E QPT+VIL+NKP + DE GR+T+ +P + + + GRLD ++ GLL+LTNN Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L RL P + Y V+V G + + L+ L+ GV L DG A E + + Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDG---FAKFESIGK----- 187 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANG 210 P +E SI W ++ + EGRNR+VRR+ G RL+R G +SL NL G Sbjct: 188 ---IPQQEEDSI-NQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRG 243 Query: 211 E-----WREVT 216 + W+++ Sbjct: 244 KSEPLTWKQIN 254 >UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B5ELL5_ACIF5 Length = 268 Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 86/176 (48%), Gaps = 18/176 (10%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA-AGRLDRDSEGLLVLTNNGALQARL 98 +V+L +KP VL DE GR T+ + +P A GRLD+ S GLL+ +N+ RL Sbjct: 84 QVLLLHKPRGVLTTRQDERGRATVYDLLPGSPWLAPVGRLDQASSGLLLFSNDPHWAQRL 143 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + K Y+VQ+ + D + L L+ P LP IR Sbjct: 144 LDPDQHVAKTYHVQIRPPLSTDTVVQLAADSVLDGEPCLPMQ----------------IR 187 Query: 159 E-RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 E R T WL+ L EGRNRQ+RR+ A LRLIR A+G+ L L GEWR Sbjct: 188 ELRCGGKTQWLEFILQEGRNRQIRRLLAACDREVLRLIRVAVGNLPLGELRAGEWR 243 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/187 (36%), Positives = 100/187 (53%), Gaps = 20/187 (10%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTN 90 R+PE T + LF KP V+ D GR TL+++ P + + GRLD +EG L+LTN Sbjct: 82 REPE---TFLFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDPLLHIGRLDFQTEGALLLTN 138 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNG-VTLNDGPTLPAGAELVDEPAW 149 NG L R+ P + Y V+++G + LE + G + L+ P +P ELV E Sbjct: 139 NGDLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPL--ELVPE--- 193 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 R++ +W +ITL EGRNR+VRR+ + + L+L+R A G +L L Sbjct: 194 ----------RQTSTNAWYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAGLEP 243 Query: 210 GEWREVT 216 GE+R VT Sbjct: 244 GEYRTVT 250 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 95.9 bits (237), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 14/174 (8%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 + NKP ++ D+ R+++ + +P V+ GRLDR++ G L+LTN+G +T P Sbjct: 70 ILNKPRGIVSSANDDKDRESVVDLVPNDIRVFPVGRLDRETTGALILTNDGDFAYYMTHP 129 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 KIY V V G + + +L+ G+T+ G E + ++ Sbjct: 130 KFDLSKIYRVSVRGRLSYEVTNSLKEGITIE-------GVE------YKGVEISRVKYDA 176 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 + + ITL+EG+NRQ+R++ AH G P L+L RY +G +D L G++RE+ Sbjct: 177 AKDKTQFSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDELKIGQYREL 230 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 95.5 bits (236), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 VI +KP V +D +T+ + +P V G++ GRLD+DSEGLL+LTN+G L +LT Sbjct: 61 VIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLKLT 120 Query: 100 QPGKRTGKIYYVQVE-GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K+Y + G ++ L GV L+DG AE E A Sbjct: 121 HPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEGA---------- 170 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +I + EG+ R+VRRM +G+P RL+R +G L L GEWR +T Sbjct: 171 ----------RIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLGKLNPGEWRYLT 218 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 62/177 (35%), Positives = 93/177 (52%), Gaps = 21/177 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQA 96 +L NKP D + D R+T+ + I V G++ GRLDR++ G+L+++N+G L Sbjct: 72 LLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSNDGDLAH 131 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 RL P KIYYV+V+ L+ L+ GV L+D GA D+ A+L P Sbjct: 132 RLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSD------GAAAADQVAYLDP---- 181 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +RK + + + L+EGRNRQ+RRM +G ++L R + L GEWR Sbjct: 182 --QRK----TDIALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGRLQRGEWR 232 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 58/176 (32%), Positives = 86/176 (48%), Gaps = 21/176 (11%) Query: 44 FNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 +KP VL D GR +L +FI + + ++ GRLD+DSEGL++LTN+G L R T P Sbjct: 69 LHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDGDLTFRATHP 128 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K Y ++ +GI + L GV L DG + K Sbjct: 129 SFGLEKTYIIEFDGILPTGVDKVLLKGVELEDG-------------------MGRVLTFK 169 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + W++++++EGR +RR+ VG LRLIR G SL + G WR++ D Sbjct: 170 QLSPKWIEVSIHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLND 225 >UniRef50_Q2NZN4 Pseudouridine synthase n=13 Tax=Xanthomonadaceae RepID=Q2NZN4_XANOM Length = 286 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 14/188 (7%) Query: 33 KPENQPTRV-ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVL 88 +P P R ++ NKP V+ DE GR T+ G + GRLD+ SEGLL+ Sbjct: 90 QPLTGPARCYLMLNKPRGVVTTVRDEQGRDTVYRCFDGAGLPWIAPVGRLDKASEGLLLF 149 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 +N+ A +T P K Y+VQ++ +P L L+ GV D P G ++ Sbjct: 150 SNDPQWAATVTDPATGPDKTYHVQIDCLPNVAQLAQLQAGVVDPD----PEGEGML---- 201 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 L + + R+ +WL+I L EGRNRQ+RR+ A V LRL+R A+G ++ L Sbjct: 202 -LRAKQVSVL-REGERNAWLEIVLDEGRNRQIRRLLAAVDIGVLRLMRVAIGPLAMGELG 259 Query: 209 NGEWREVT 216 G WR ++ Sbjct: 260 KGAWRMLS 267 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/183 (31%), Positives = 96/183 (52%), Gaps = 15/183 (8%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGA 93 N+ L NKP V+ +D+ GR+T+ + +P + +Y GRLD D+ GLL+LTN+G Sbjct: 82 NEEKVYYLLNKPRGVISSVSDDKGRQTVIDLLPQVKERIYPVGRLDWDTSGLLILTNDGD 141 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 ++ P K+Y +V+G+ T+++L L GV ++ T PA ++ R Sbjct: 142 FTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRII--------R 193 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 P + R S +++T++EGR+ QV++M VG +L R G + L GE R Sbjct: 194 VEPDKNR-----SIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRGLKPGEAR 248 Query: 214 EVT 216 ++ Sbjct: 249 RLS 251 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/174 (32%), Positives = 87/174 (50%), Gaps = 17/174 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 I NKP D+ K + + I VY GRLD+DS GLL+LTN+G LT Sbjct: 63 IAINKPIGYASTVKDKFADKKVVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTYELTH 122 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P KIY V V+G P + ++ L++G+ L+ + E ++ Sbjct: 123 PKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIEFIENVK------------ 170 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWR 213 + ++T++EGRNRQ+RRM + P L L R +G+Y ++N L +GE++ Sbjct: 171 ---NDTKYRVTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYK 221 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 86/175 (49%), Gaps = 20/175 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP D + D RKT+ E + G +Y GRLDR++ GLL++TN+G L +L Sbjct: 466 VLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITNDGELADKL 525 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P KIY V+++ T + EA++ G+ L DGP P +V A++ Sbjct: 526 THPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYV-------- 577 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 + I ++ GRNR VRR+ G+ +L R + L G+WR Sbjct: 578 ---------VGIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLTKKELPRGKWR 623 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 94.7 bits (234), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 63/174 (36%), Positives = 84/174 (48%), Gaps = 17/174 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ NKP + DE GRKT+ +P +G + AGRLD++SEGLL TN+ AL LT Sbjct: 103 LILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALINLLT 162 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K+Y V + L LR GV + G TLPAG + + Sbjct: 163 HPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFV---------------K 207 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 K+ LKI + EGR RQ+R+M VG L R G L +L G WR Sbjct: 208 SKNANGMTLKIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWR 261 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP + + DE GR+T+ E I + GRLDR++ GLL+ TN+G L +L Sbjct: 131 VLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGELAKKL 190 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P KIY+V+++ L LR G+ L DG VDE +++ Sbjct: 191 THPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRI------EVDEASYI-------- 236 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + + L+ GRNR VRR+ H+G+ ++L R + + +L G WR +T+ Sbjct: 237 --DGASKKEVGVELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLTKKDLPRGHWRHLTE 293 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 92/178 (51%), Gaps = 21/178 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 ILFNKP +V+ +DE R+ + +FI V + VY GRLDR + G+L+LTN+G L +L Sbjct: 77 ILFNKPRNVITTSSDERNREMVLDFIDVNERVYPVGRLDRKTTGVLLLTNDGMLANKLMH 136 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIR 158 P K Y ++ Q +L L G+ L+D P A+++ + + +W Sbjct: 137 PSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQVW------- 189 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 I+++EG+N QVRRM +GF RL R ++ +L G+WR +T Sbjct: 190 -----------ISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVGDLRRGQWRHLT 236 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 17/178 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKT---LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP L D A L E + V+ GRLD+D+ GLL+LTNNG L L Sbjct: 66 ILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLAHDLL 125 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K K Y +V GI T + G++L D LPA E++D+ Sbjct: 126 SPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDKDL----------- 174 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 S T + IT+ EG+ QV+RM A G L L R +MG LD LA G++R +T Sbjct: 175 --SQETCVVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLT 230 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/178 (35%), Positives = 87/178 (48%), Gaps = 20/178 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++FNKP V+ D GR + +F+ + ++ GRLD +EGLL+LTN+G L RL Sbjct: 231 MVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTNDGELANRL 290 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K Y VQV G Q L+ GV L DG +LVD Sbjct: 291 THPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVD------------- 337 Query: 159 ERKSIPTSWL-KITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 S P L ++ L+ G+NR VRR+ VGFP LRL+R +G L + G R + Sbjct: 338 ---STPGHVLIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLGDQRQGSIRNL 392 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 94.0 bits (232), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 64/181 (35%), Positives = 96/181 (53%), Gaps = 17/181 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGAL 94 +P R+ L+ KP ++ +DE GR+T+ + +P + V + GRLD +SEGLL+LTN+G L Sbjct: 65 EPARLWLYYKPEGLVTSASDEKGRETVFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDGEL 124 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 + RL P + Y V+V+G PT LE LR G+T+ P L Sbjct: 125 KRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSL----------- 173 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 +R +WL + L EG+NR++RR + +G RLIR + G + L+ L G E Sbjct: 174 ----DRVQGANAWLTVGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEE 229 Query: 215 V 215 V Sbjct: 230 V 230 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 89/179 (49%), Gaps = 20/179 (11%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQAR 97 L +KP V+ D GR T+ + +P +G++ GRLD S G L+LTN+G Sbjct: 68 LIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDGNFTLA 127 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 LT P K Y V ++G + L+ R GV L D TLP L I Sbjct: 128 LTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKT-----------I 176 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + K+ + I L EGRNRQ+RR+ +GFP ++L R A+G+ L +L G+ R +T Sbjct: 177 TQDKTC----IDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGDLQRGQARPLT 231 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 17/179 (9%) Query: 37 QPTRV-ILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGAL 94 +P R+ + NKP V+ D+AGR + + +P + V+A GRLDR SEGL+++TN+G Sbjct: 90 KPQRLYFVVNKPEGVVTTNYDQAGRTRVIDLVPTDERVFAVGRLDRASEGLIIVTNDGEF 149 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 R+T P K Y V+V G + L LR G+ L+DG ++ Sbjct: 150 ANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQV----------- 198 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +R+ ++ + I L EG+NR++RR+ A +G L+L R A+G L L G WR Sbjct: 199 ----KRRHKQSTDMVIQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGELPLGAWR 253 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 94.0 bits (232), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 15/173 (8%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +F KP + DE R + ++ + +Y GRLD D+ GL++++N+G + Sbjct: 64 VFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFANMIMH 123 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P KIY V ++G+ T L L GV L TLP ++VD+ E Sbjct: 124 PRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDT----------EH 173 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 K T+ LKI L EG+NRQV++M VG P RL R ++G +L L G +R Sbjct: 174 K---TTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKGLTPGRYR 223 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 24/191 (12%) Query: 35 ENQPTRV------ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLV 87 + QP R+ I+ +KP V+ D GR T+ + + V V+ GRLD DSEGL++ Sbjct: 54 DGQPLRMPAKRTYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPARVFPVGRLDLDSEGLIL 113 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEP 147 LT++G L LT P K Y V ++ T DAL + RNGV L T PA EL++ Sbjct: 114 LTDDGELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLE-- 171 Query: 148 AWLWPRNPPIRERKSIPTS-WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN 206 + P W++I L EGR RQ+R + +G+ RL+R G L + Sbjct: 172 --------------TTPEGVWVRIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLGD 217 Query: 207 LANGEWREVTD 217 L WR +TD Sbjct: 218 LPPRAWRHLTD 228 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 62/179 (34%), Positives = 92/179 (51%), Gaps = 23/179 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ NKP D + TDE KT+ + I ++ GRLD+D+EGLL++TN+G L Sbjct: 63 LMLNKPKDYISATTDEQ-HKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNHEL 121 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 PGK K Y V + T++ + A + G+ LN+G PA DE Sbjct: 122 MSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEGLAKPAKLVQGDE------------ 169 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 + S+ +T+YEGR QV+RM + L L R +GD LD+ LA+GE+R +T Sbjct: 170 ----LNKSF--VTIYEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLT 222 >UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae RepID=Q1D9N8_MYXXD Length = 268 Score = 93.6 bits (231), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 88/191 (46%), Gaps = 27/191 (14%) Query: 35 ENQPTRVILFNKPYDVLPQF-----TDEAGRKTLKEFIPVQGVY---AAGRLDRDSEGLL 86 E PTRV+ F+KP +L T L + P Y A GRLD DS GLL Sbjct: 80 EAPPTRVLAFHKPAGLLSSTERQHRTGTVFEALLPQLPPELAGYTWHAVGRLDVDSTGLL 139 Query: 87 VLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE 146 + TN+ L A T P K Y V + + +E LR G+TL+DGP PA + DE Sbjct: 140 LFTNDDKLVAHATSPDAHLPKRYVATVFSTASDERVEPLRRGMTLDDGPARPAKVNVRDE 199 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN 206 +++TL EGR+ QV+RM VG P L R A+G L+ Sbjct: 200 -------------------HTVEVTLTEGRHHQVKRMLGAVGLPVRALHREAVGSVDLEG 240 Query: 207 LANGEWREVTD 217 + G +R +TD Sbjct: 241 IPEGTFRLLTD 251 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 19/181 (10%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQA 96 + IL NKP + + D+ GRKT+ + I + +Y GRLDR++ GLL+ TN+G L Sbjct: 131 KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTNDGELAK 190 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 +LT P K+Y+ ++ LE LR V + VD Sbjct: 191 KLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVD----------- 239 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 P S + I ++ GRNR VR++ H+G+ +L R + + NL G WRE+T Sbjct: 240 -----GQPKSEVGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELTKRNLPRGRWRELT 294 Query: 217 D 217 + Sbjct: 295 N 295 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 19/187 (10%) Query: 33 KPENQPT--RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVL 88 KP N PT R+ L++K +L D GRKT+ + +P V GRLD ++EGLL+L Sbjct: 322 KPVNAPTETRLFLYHKATGLLTTERDPEGRKTIYDRLPADLPRVMPVGRLDMNTEGLLLL 381 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 T +G + L P + Y +V G +QD LE L GVT++ G A Sbjct: 382 TTDGGFKRMLELPATHIERCYRARVFGDVSQDQLEELIEGVTID-------GIHYGSIDA 434 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 L ER++ W+++ L+EGRNR+VRR+ ++G RLIR + G + L +L Sbjct: 435 NL--------ERRTGRNGWVEMKLHEGRNREVRRVLGYLGLQVSRLIRISYGPFLLGDLP 486 Query: 209 NGEWREV 215 G EV Sbjct: 487 VGAVEEV 493 >UniRef50_Q11WC7 Pseudouridine synthase n=2 Tax=Sphingobacteriales RepID=Q11WC7_CYTH3 Length = 224 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 57/182 (31%), Positives = 95/182 (52%), Gaps = 9/182 (4%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLK--EFIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 R + NKP++++ QF L +F +G +A GRLD +SEGLL+LT N + Sbjct: 29 RYFIINKPFNMVSQFISSDAVNLLGNLDFTFPEGTHAVGRLDNESEGLLILTTNKKVTRL 88 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL-----NDGPTLPAGAELVDEPAWLWP 152 L Q K+ + Y V V+ +++ L+ L+ G+++ + + P A +V + ++ Sbjct: 89 LFQGTKKHTRTYLVLVKNKVSEETLKQLQTGISIRVKGGGNYISSPCEASIVTDAKAIYS 148 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 RE + P +WL +TL EG+ QVR+M V LRLIR ++ + L +L G Sbjct: 149 YAADTRE--NYPHTWLLLTLTEGKFHQVRKMVLAVNHRCLRLIRVSIENMLLHDLQPGAV 206 Query: 213 RE 214 +E Sbjct: 207 KE 208 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 93.2 bits (230), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 63/185 (34%), Positives = 89/185 (48%), Gaps = 25/185 (13%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQA 96 IL NKP ++ D R + + +P G++ GRLD +S G L+LTN+G L Sbjct: 67 ILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALLLTNDGNLTL 126 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 RLT P KIY V V G TQ L+ R GV L+ TLPA E+++ Sbjct: 127 RLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNNRQ------- 179 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-----DNLANGE 211 + LKI L EG+NR +RR+ ++L R A+G SL DN+ G Sbjct: 180 --------YTNLKIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGH 231 Query: 212 WREVT 216 +R ++ Sbjct: 232 YRLLS 236 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 80/146 (54%), Gaps = 14/146 (9%) Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 V+ GRLD+D+ GLL+LTNNG L L P K K Y +V GI T+ + G++L Sbjct: 97 VFPVGRLDKDTRGLLLLTNNGQLAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISL 156 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 D LPA E++ ++++ TS +KIT+ EG+ QV+RM A G Sbjct: 157 KDHQCLPAHLEVL---------ASDLQQQ----TSLVKITIQEGKFHQVKRMVAACGKEV 203 Query: 192 LRLIRYAMGDYSLD-NLANGEWREVT 216 L L R +MG LD +LA GE+R +T Sbjct: 204 LDLQRLSMGPLKLDPSLAEGEFRRLT 229 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 17/177 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 L NKP D L DE R + I Q +Y GRLD+ SEGL+++TN+G L +L+ Sbjct: 66 LLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELSNKLSH 125 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y+++++G + + + AL++GV L G T P + + Sbjct: 126 PKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIK---------------KMH 170 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +S S ++ L EG+NR++RRM A G L R +G +L G++R++T+ Sbjct: 171 RSFKKSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYRKLTE 227 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 20/186 (10%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-----VYAAGRLDRDSEGLLVLTN 90 +Q R NKP V+ D GR T+ ++ G ++ GRLD D+EGL++LTN Sbjct: 192 SQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTN 251 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L RLT P + K Y +V G +D + +R GV L+DG ++D Sbjct: 252 DGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIE-- 309 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 P + ++I L+EGR VRR+ VG P L R +G L+NL +G Sbjct: 310 -------------PKALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLNNLKSG 356 Query: 211 EWREVT 216 R +T Sbjct: 357 TIRALT 362 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 14/174 (8%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 L NKP L D+ R T+ + I +Q +Y GRLD ++ GLL++TN+G L +LT Sbjct: 64 LLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLTQKLT 123 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y+V++ + L G+ + D L E+ P+ Sbjct: 124 HPSFCIPKEYHVKINACLQKKDLSTFCKGIII-DKKYLAVCKEIDILKISYMPK------ 176 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 P++WLK+ + EG+NRQVR+M +G+ L+L RY +++NL G +R Sbjct: 177 ----PSTWLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIENLTIGAYR 226 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 92.8 bits (229), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 88/179 (49%), Gaps = 20/179 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 IL NKP D + D RKT+ + I + VY GRLDR++ GLL+LTN+G L +L Sbjct: 384 ILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAEKL 443 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P KIY +++ T + E L+ GV L DG P LV A + Sbjct: 444 THPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQV-------- 495 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + + ++ GRNR VRRM H+G+ +L R + +L G+WR +T+ Sbjct: 496 ---------VGLEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTE 545 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 17/174 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 L KP V+ +D GR T+ ++ G ++ GRLD D+EG L+ T++GAL +LT Sbjct: 67 FLLYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDGALAHKLT 126 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + + Y +V+G P L+ LR GV L DG P + + E Sbjct: 127 HPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFE-----------AAE 175 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R +WLKI + EGR ++R+ A VG P +RL R + ++ L GE R Sbjct: 176 R----NTWLKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEGLRPGELR 225 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 20/179 (11%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 LF KP + D+ KT+ +++ ++ GRLD D+EGLL++TN+GAL L Sbjct: 88 LFYKPAGCVTATEDQL-HKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAHDLL 146 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K K YY ++G+ T+ + + NGV + G E + +P L R Sbjct: 147 SPAKHVEKTYYAVIDGVVTEKDVNSFENGVDI--------GEEKLTKPGKL-------RI 191 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 KS P S +++T+ EGR QV+RM VG L L R +MG L D+L GE+R +T+ Sbjct: 192 LKSEPESEIELTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTE 250 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/206 (30%), Positives = 95/206 (46%), Gaps = 31/206 (15%) Query: 24 FSSQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI--P 68 ++ TR P+ Q RV + NKP VL D GR TL++ + Sbjct: 51 LVTELGTRVDPKRQQVRVDGSRIRLNPRHITLALNKPRKVLSTMDDPKGRYTLRDIVGDK 110 Query: 69 VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL-RN 127 + ++ GRLD DSEGL+++TN+G L + P K Y +EG + L R Sbjct: 111 YERIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRT 170 Query: 128 GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 GV L+DG W+ + I + T +K+ L+ GRNR VRR+ + Sbjct: 171 GVQLDDG--------------WIKLDHCSIIDSNRDQT-IVKVVLHSGRNRIVRRIFGAI 215 Query: 188 GFPTLRLIRYAMGDYSLDNLANGEWR 213 GFP RL+R +G L ++ +G +R Sbjct: 216 GFPVKRLVRTQIGPIKLGDIKSGSYR 241 >UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z4I7_9FIRM Length = 175 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 61/177 (34%), Positives = 88/177 (49%), Gaps = 20/177 (11%) Query: 43 LFNKPYDVLPQFTDEAGRKT--LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 + NKP VL +D + L + P +G++ GRLD+D+EGLL++TN+G L L Sbjct: 1 MLNKPAGVLSAVSDNNCKTVIDLLDVTPKKGLFPVGRLDKDTEGLLLITNDGELSHNLLS 60 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K K YYV++ G +E G L G + + +PA L I E+ Sbjct: 61 PAKHVDKTYYVELNGDLIDSDIELFEKG--------LDIGEKNLTKPAIL-----KILEK 107 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +S IT+ EG+ QV+RM +G L R MG LD NL GE+R++T Sbjct: 108 RSTAL----ITITEGKYHQVKRMFQAIGLTVTFLKRLTMGPLKLDENLKPGEYRKLT 160 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 93/184 (50%), Gaps = 18/184 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNG 92 Q L NKP V+ T++ ++T+ + QG+ GRLD+D+ GLL+LTN+G Sbjct: 69 QQYHYFLLNKPKGVISA-TEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTNDG 127 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 AL L P K K+Y ++ G+P + + G+ L DG L +PA L Sbjct: 128 ALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKL--------KPAKL-- 177 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGE 211 +++ + S ++I + EG+ Q++RM VG L L R +MG L +L GE Sbjct: 178 --KILKQDQDNNLSQIEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGE 235 Query: 212 WREV 215 ++E+ Sbjct: 236 YKEI 239 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/176 (36%), Positives = 95/176 (53%), Gaps = 16/176 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +L +KP V+ D GR+T+ + + ++ GRLD DSEGLL+LT++G L RLT Sbjct: 65 VLLHKPSSVMTTLHDPEGRQTVADLVKSHNRLFPVGRLDYDSEGLLLLTDDGDLTFRLTH 124 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y + P+ + L RNGV L+DG T PA EL++E A Sbjct: 125 PSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETA------------ 172 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +W+++ ++EGRNRQ+RR+ +G RLIR G +L L G+WR +T Sbjct: 173 ---DGTWVRVVIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGELQAGQWRALT 225 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 96/186 (51%), Gaps = 18/186 (9%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAGRLDRDSEGLLVLTN 90 KPE P R LF+KP V+ +D AGR+T+ ++ + V+ GRLD SEGLL++TN Sbjct: 58 KPE--PLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVRERVFPVGRLDYHSEGLLLVTN 115 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L LT P K Y V V G ++ + + GV ++ G T P E++ + Sbjct: 116 DGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVL---GYD 172 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 +N + L++ L+EG+NR++R+M +P L R +LD + G Sbjct: 173 AEKNK----------TRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTLD-VNRG 221 Query: 211 EWREVT 216 ++R +T Sbjct: 222 QYRRLT 227 >UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKU3_9CAUL Length = 489 Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 24/187 (12%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGAL 94 +PTRV ++KP ++ D GR T+ +P + V + GRLD +SEGLL+LTN+G L Sbjct: 103 EPTRVWRYHKPVGLMTTHQDPQGRPTVFNSLPQELPRVISVGRLDINSEGLLLLTNDGEL 162 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND---GP---TLPAGAELVDEPA 148 L P ++Y V+ G TQ+AL+ L+ GVT+ GP L E D A Sbjct: 163 ARALELPTTGWTRVYRVRALGRTTQEALDTLKTGVTVEGVQYGPIEAKLDKAQEKADGRA 222 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 L W+ ++L EG+NR+VR++ +G RLIR A G + L ++ Sbjct: 223 NL----------------WITVSLNEGKNREVRKVLDSLGLKVNRLIRLAYGPFQLGDIE 266 Query: 209 NGEWREV 215 GE E+ Sbjct: 267 PGEVEEI 273 >UniRef50_C5CGJ5 Pseudouridine synthase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGJ5_KOSOT Length = 205 Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/189 (31%), Positives = 94/189 (49%), Gaps = 20/189 (10%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLT 89 +P Q V NKP L +D+ GRKT+ + I + V+ GRLD D+EGL++LT Sbjct: 23 RPRKQQRVVYALNKPRGYLSSMSDDRGRKTIADLIKGKIPEKVFHVGRLDMDTEGLIILT 82 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPAGAELVDEPA 148 N+G L +L+ P + K Y +V G + ++ L NGV L DG T A ++ Sbjct: 83 NDGELARKLSHPSSKIRKTYVARVTGKLSHHEIKRLENGVVLRDGFKTSGASIRVI---- 138 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 R S+ + ++I ++EG R++R M L L R A+G +D + Sbjct: 139 -----------RASLRDTLVEIIIHEGHKREIREMFKVFDKHVLYLKRTAIGSLKVDIVP 187 Query: 209 N-GEWREVT 216 N G+ +++T Sbjct: 188 NPGDIKKLT 196 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/204 (30%), Positives = 98/204 (48%), Gaps = 18/204 (8%) Query: 19 HQVKRFSSQRSTRRK----PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGV 72 HQV Q + K P N+ T+VI+F+KP + D GR+T+ +++P Sbjct: 39 HQVDETKDQVTVDGKLLKLPTNKKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNF 98 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 GRLD S GLL+ T++G L RLT P + YYV ++ A + L +GV + Sbjct: 99 KYVGRLDLQSRGLLLFTDDGELLYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIR 158 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 D P P E + ++ N + ++ L EG+NR++RRM +G+ Sbjct: 159 D-PEDPDAQEEIAFATDVYLEN-----------GFAELVLIEGKNREIRRMMRAIGYEIR 206 Query: 193 RLIRYAMGDYSLDNLANGEWREVT 216 L R + L +L GE+RE+T Sbjct: 207 DLKRVSYCQIQLGDLPAGEFRELT 230 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/203 (31%), Positives = 93/203 (45%), Gaps = 31/203 (15%) Query: 30 TRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYA 74 TR P+ Q RV + +KP VL D GR TL++ + + ++ Sbjct: 84 TRVDPKRQKVRVDGSRVKFNTKLVTLALHKPKRVLSAMDDPKGRFTLRDIVGDKYERIFH 143 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG-IPTQDALEALRNGVTLND 133 GRLD DSEGL+++TN+G L + P K Y VEG I + GV L D Sbjct: 144 MGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLED 203 Query: 134 GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 193 G W+ I ++ T+ +KI L+ G+NR VRR+ VGFP R Sbjct: 204 G--------------WIKLDRCAIIDQNH-DTTMVKIVLHSGKNRIVRRIFGAVGFPVKR 248 Query: 194 LIRYAMGDYSLDNLANGEWREVT 216 L+R +G L +L G +R ++ Sbjct: 249 LVRTQIGPIKLGDLKAGSYRVLS 271 >UniRef50_C1FHS6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FHS6_9CHLO Length = 248 Score = 90.1 bits (222), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 66/180 (36%), Positives = 93/180 (51%), Gaps = 36/180 (20%) Query: 44 FNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAA-----GRLDRDSEGLLVLTNNGALQARL 98 +NKP V T E+ ++T P +GV +A GRLDRDS GL++LT++G + L Sbjct: 66 YNKPRGV--TCTMESSQRTK----PAKGVGSARVFPVGRLDRDSSGLVLLTDDGRVPEAL 119 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN-----DG-----PTLPAGAELVDEPA 148 P ++ K Y V V PT DA+EALR+GV + DG PT P +L+ Sbjct: 120 LDPSRKAPKTYEVDVRPAPTPDAIEALRDGVVITTTQQRDGVTTTSPTAPCPVDLI---- 175 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 +KS ++ L+ L EGRNRQ+R+M VG +RL R ++G LD A Sbjct: 176 -----------KKSETSATLRFELREGRNRQIRKMCEAVGVEVVRLHRVSVGGVWLDESA 224 >UniRef50_A0CY18 Chromosome undetermined scaffold_30, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CY18_PARTE Length = 337 Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 20/192 (10%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDS 82 ++ + P Q T+V +F KP ++ D R + +F + Q + + GRLD +S Sbjct: 86 KNGEKMPTKQSTKVWIFYKPVGMICSHNDPFKRPSFYDFAKLRLKTDQHIISVGRLDFNS 145 Query: 83 EGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAE 142 EGL+V+TN+G L + P + +IY V+V G T++ L+ +RNG+T+ AG Sbjct: 146 EGLIVVTNDGELARCMELPETKLQRIYRVRVYGTFTEEKLKKIRNGITI-------AGVN 198 Query: 143 LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 P W+ N R +WL + L +G+NR++R++ RLIR + G Y Sbjct: 199 Y--GPYWVNVENRQSR------NTWLIMRLEQGKNREIRKVMQKFDLRVNRLIRQSYGPY 250 Query: 203 SLDNLANGEWRE 214 L L G++ E Sbjct: 251 KLMGLKPGDFYE 262 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 89.7 bits (221), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 62/204 (30%), Positives = 93/204 (45%), Gaps = 31/204 (15%) Query: 26 SQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI--PVQ 70 ++ TR P Q RV + NKP VL D GR TL++ + + Sbjct: 52 TELGTRVDPHKQQVRVDGSRVRVNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYE 111 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG-IPTQDALEALRNGV 129 ++ GRLD DSEGL+++TN+G L + P K Y +EG I + GV Sbjct: 112 RIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGV 171 Query: 130 TLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 L+DG W+ + I + S + +K+ L+ G+NR VRR+ +GF Sbjct: 172 QLDDG--------------WIKLDHCAIID-SSRDHTMVKVVLHSGKNRIVRRIFGSIGF 216 Query: 190 PTLRLIRYAMGDYSLDNLANGEWR 213 P RL+R +G L +L G +R Sbjct: 217 PVKRLVRTQIGPIKLGDLKPGSYR 240 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/183 (34%), Positives = 96/183 (52%), Gaps = 13/183 (7%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 E +P RV ++KP ++ D GR T+ E +P + + + GRLD +SEGLL+LTN+G Sbjct: 206 EPEPVRVFRYHKPVGLVTTHKDPQGRPTVFEALPEGLPRLISVGRLDLNSEGLLLLTNDG 265 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L L P + Y + G TQ+ L+ L++G+T+ +G A +D+ Sbjct: 266 GLARALELPATGVVRRYRARAHGRITQERLDTLKDGITV-EGVRYGAIEARLDK------ 318 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 +E WL +TL EG+NR+VRR+ +G RLIR + G ++L L GE Sbjct: 319 ----AKEGHQGANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALGTLDVGEI 374 Query: 213 REV 215 EV Sbjct: 375 EEV 377 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 89.4 bits (220), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 63/177 (35%), Positives = 86/177 (48%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 IL+NKP L D+ R + +FI V V + GRLD D+EGLL+LT++GAL LT Sbjct: 105 ILYNKPKGQLCSRLDKKKRPLIYDFIDVAPNVQSIGRLDMDTEGLLMLTDDGALTRALTH 164 Query: 101 PGKRTGKIYYVQVEGIPTQDALEAL-RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + + Y +V GI + L L R G+ + G T A VD Sbjct: 165 PAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDS------------- 211 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 +S +WL I + GR R+VRR G P RL+R G LD ++ G WR + Sbjct: 212 -ESAGHTWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRAL 267 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 20/176 (11%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 + NKP VL D+ GR+ +FI + ++ GRLD +EGL++++N+G + + P Sbjct: 63 ILNKPKRVLCSNEDKFGRRLAVDFIKSRARLFTYGRLDFMTEGLIIISNDGEVYNHVMHP 122 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K+ K Y +V +EAL++GV ++ T PA K Sbjct: 123 RKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKV-------------------K 163 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 I L+I ++EGRNRQ+R+M +G+ L R +G+ +L NL GE+R + + Sbjct: 164 KIDKKELRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVGELTLGNLQVGEYRALNE 219 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 20/179 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP D + D RKT+ + I + +Y GRLDR++ GLL+ TN+G + +L Sbjct: 220 VLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEVAKKL 279 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 + P K+Y V+++ + L+++ GV L D G VDE A L P Sbjct: 280 SHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILED------GYAAVDEIAILNP------ 327 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ER + + + ++ GRNR VRR+ H+ + ++L R + N+ G+WR +++ Sbjct: 328 ER-----TLVGVEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLNKKNIDRGDWRYLSE 381 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 23/188 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEF---IPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L +KP + +D GR+T+ + IP + +Y GRLD SEGLL+LTN+G + A+L Sbjct: 66 VLLHKPKGYVTTVSDPEGRETVMDLVKGIPAR-LYPVGRLDYLSEGLLLLTNDGEMAAKL 124 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T K Y V+V G PT++ ++ LRNGV L P + +P R Sbjct: 125 THASTHVPKKYLVKVSGEPTEEQIQELRNGVQL-----PPEQGHIHADPREGGRFGGEKR 179 Query: 159 ERKSIPTS-------------WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD 205 ++ T+ W ++TL EGRNRQ+RRM +G ++ R G LD Sbjct: 180 RSTAVKTAPCKIELTREGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGPLKLD 239 Query: 206 NLANGEWR 213 + NGE+R Sbjct: 240 -VENGEFR 246 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/174 (35%), Positives = 81/174 (46%), Gaps = 18/174 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 I NKP + D GR+T+ + + + VY GRLD SEGLL+LTN+G L + Sbjct: 67 IALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANSIM 126 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 K Y V+V G T + E R GV L+ TLPAG +L+ NP Sbjct: 127 SAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSR-----AENP---- 177 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 W ++ L EGRN Q+R M H G +L R +G L L G +R Sbjct: 178 -------WYEVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFR 224 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 22/189 (11%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLL 86 R P+N T +L NKP V+ D GR T+ + IP + ++ GRLD +S G L Sbjct: 58 RLPDNHVT--LLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGAL 115 Query: 87 VLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE 146 +LT +G+L L+ P K Y V VEG P+ ++ + G+ L+ T +++ Sbjct: 116 ILTTDGSLTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILC- 174 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN 206 K + ++ L+I + EGR RQ+RR +G P + L R + L + Sbjct: 175 --------------KRVTSTLLEIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRLGS 220 Query: 207 LANGEWREV 215 L G WR++ Sbjct: 221 LPEGRWRKL 229 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 29/187 (15%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTL--------KEFIPVQGVYAAGRLDRDSEGLLVLTNN 91 R L NKP + D + + K+ PV GRLD D+EGLL++TN+ Sbjct: 61 RYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPV------GRLDLDTEGLLIITND 114 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL-NDGPTLPAGAELVDEPAWL 150 G L L P K YY ++G + + G+ + +D PTLPA ++ Sbjct: 115 GRLAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKI------- 167 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLAN 209 I +S +S +++T+ EGR QV+RM V L R +MG+ + D+L Sbjct: 168 ------IEADRSTGSSRIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPT 221 Query: 210 GEWREVT 216 G +RE+T Sbjct: 222 GSYRELT 228 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 88.6 bits (218), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 17/180 (9%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 R LF+KP VL +D AGR + + P V ++ GRLD +EGLL++TN+G L R Sbjct: 97 RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDGDLAER 156 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 LT P +IY V G P+ +A+ L G+ +G + + Sbjct: 157 LTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEG---------------RFRMSSVN 201 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R + + L+IT+ EG+NR++RR+ A VG ++L R G L +L G R++++ Sbjct: 202 RVKSQGSATVLEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKLGDLERGAHRKLSE 261 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 20/185 (10%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNN 91 E + ++ NKP + D KT+ E + + +Y GRLD++S GLL+ TN+ Sbjct: 271 EGEKKVYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTND 330 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L +LT P + KIY V ++ T+ +E + G+TL DG DE A+ Sbjct: 331 GDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEI------YADEIAY-- 382 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 ++E K + + I ++ GRNR VRR+ H+G+ +L R S NL G+ Sbjct: 383 -----VKEDK----TEVGIEIHSGRNRIVRRIFEHLGYAVKKLDRVYYAGLSKKNLKRGQ 433 Query: 212 WREVT 216 WR +T Sbjct: 434 WRFLT 438 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 19/175 (10%) Query: 44 FNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPG 102 NKP + D +K L + + + AGRLD+DS GL+++TN+G + +L P Sbjct: 64 LNKPIGFISSNYDPHNKKDLNSLVKIDHRFFCAGRLDKDSHGLMLITNDGKITNKLIHPS 123 Query: 103 KRTGKIYYVQVEGIPTQDALEALRNGVTLN-DGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K+ K Y V+V+ + +D R G+ L+ + T A L+DE + ++ Sbjct: 124 KKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSKIYE--------- 174 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + +++G NRQVRRM + G + L R +G L L +G+++++ Sbjct: 175 --------VIIHQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGKLEDGKYKKLN 221 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 89/180 (49%), Gaps = 18/180 (10%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP V+ TD A + + F ++ GRLD+D+EG+LV+TN+GAL L Sbjct: 64 VMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGALSHDLL 123 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWPRNPPIR 158 P K+Y +V G T L +G+TL DG L PA AE+V Sbjct: 124 SPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIV-----------QFH 172 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 E ++ T ++I ++EG+ QV+RM +G + L R G +L L G +R +TD Sbjct: 173 EIENFTT--IRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTD 230 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 96/184 (52%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 P+ + TR+ LF+KP + D GR+T+ + +P + V + GRLD ++EGLL+LTN+ Sbjct: 238 PQAERTRLWLFHKPAGTVTTNKDPEGRRTVFDMLPEDMPRVLSIGRLDINTEGLLLLTND 297 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L L P + Y V+ G TQ L+ LRNG+++ DG A +D Sbjct: 298 GGLSRVLELPSTGWLRRYRVRAHGSITQAKLDELRNGISV-DGVFYGAIEATLD------ 350 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 R+ W+ + L EG+NR+V+ + +G RLIR + G + L +LA G Sbjct: 351 --------REQGSNVWITLGLREGKNREVKNVLGALGLEVNRLIRLSYGPFQLGDLAEGS 402 Query: 212 WREV 215 REV Sbjct: 403 VREV 406 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 75/142 (52%), Gaps = 19/142 (13%) Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 GRLD+D+EGLL+ TN+G L RL P K Y+ +E T++ALE LR GV + + Sbjct: 99 VGRLDKDTEGLLLFTNDGKLNHRLLSPKSHVDKTYHASLECDITEEALEKLREGVMIGEY 158 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 TLPA AE + +RK + +T+ EG+ QV++M VG + L Sbjct: 159 KTLPAKAE-------------KLEDRK------IALTIREGKFHQVKKMLEAVGNKVIYL 199 Query: 195 IRYAMGDYSLDNLANGEWREVT 216 R + G L +L GE +EV+ Sbjct: 200 KRISFGKLVLGDLELGEVKEVS 221 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 91/184 (49%), Gaps = 21/184 (11%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 E+ + L NKP V+ TD + F ++G+Y GRLDRD+EGLL++TNNG Sbjct: 56 EDNSQKYYLLNKPKGVITATTDSQLPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNG 115 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-PAGAELVD-EPAWL 150 L RL P + K YYV+V G ++ +G+ +DG PA +++ P++ Sbjct: 116 PLGYRLLNPIQHIEKEYYVEVNGPLDNSCIQRFYDGIMFHDGTICKPAKLSILESSPSF- 174 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLAN 209 S +T+ EG+ Q+++M VG L R G++ LD +L+ Sbjct: 175 ---------------SKATVTISEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSP 219 Query: 210 GEWR 213 GE+R Sbjct: 220 GEYR 223 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 89/179 (49%), Gaps = 18/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ NKP ++ D GR T+ + + + + GRLD+ SEGLL+ TN+ L Sbjct: 132 LMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTEFAQTL 191 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K Y+VQ++ + + + A+ +G+ +DG L A A R Sbjct: 192 LDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIR-HDGELLTAAATR--------------R 236 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+ SW+++ L EGRNRQ+RRM +G LRL+R A+G L L G R +T+ Sbjct: 237 LRQGDRNSWIEVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGELPKGAVRALTE 295 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 63/184 (34%), Positives = 95/184 (51%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 P + TR+ LF+KP + D GRKT+ + +P + V GRLD ++EGLL+LTN+ Sbjct: 91 PTRERTRLWLFHKPRGTVTTNKDPEGRKTVFDILPKDMPRVVTVGRLDINTEGLLLLTND 150 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L + P + Y V+ G TQ+ L+AL++GV + DG A +D Sbjct: 151 GGLSRVIELPATGWLRRYRVRAFGKVTQEQLDALKDGVAI-DGVLYGAIEATLDT----- 204 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 + WL I L EG+NR+V+R+ H+ RLIR + G + L +L GE Sbjct: 205 ---------EKGDNVWLTIGLREGKNREVKRILEHLDLSVNRLIRISFGPFQLGDLGEGE 255 Query: 212 WREV 215 +E+ Sbjct: 256 LQEI 259 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/178 (29%), Positives = 88/178 (49%), Gaps = 19/178 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP + + TD GR+T+ + + + +Y GRLDR++ G+L+LTN+G L RL Sbjct: 267 VLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDLAVRL 326 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P R KIY V ++ T + ++ + +G L DG D +++ + Sbjct: 327 MHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIH------ADAISYITGQT---- 376 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + I ++ GRNR VRR+ H+G+ + L R + +L G WR +T Sbjct: 377 ------HDKVGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLTKKDLPRGRWRYLT 428 >UniRef50_Q3Z8C8 Pseudouridine synthase n=5 Tax=Dehalococcoides RepID=Q3Z8C8_DEHE1 Length = 249 Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 61/180 (33%), Positives = 95/180 (52%), Gaps = 22/180 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQAR 97 ++ NKP +++ +DE GRKT+ + + + G++ GRLD + GLL+LTN+G L R Sbjct: 73 LMLNKPPEIVSTTSDELGRKTVMDLLHRRYEGAGLFPVGRLDETTTGLLLLTNDGELTNR 132 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAG-AELVDEPAWLWPRNPP 156 LT P K Y + ++ TQ E+L G+ L+DG T PA + + DEP + + Sbjct: 133 LTHPSYEIEKEYLISIDAALTQADKESLEKGMLLDDGLTSPARLSRVTDEPPYNY----- 187 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 K+ ++EG+ R VRRM AH+G+ L R + L L G+ RE+T Sbjct: 188 ------------KLIIHEGKKRIVRRMFAHLGYQIKALKRSRIATLRLGKLEEGKTRELT 235 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 87.8 bits (216), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 20/182 (10%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFI-----PVQGVYAAGRLDRDSEGLLVLTNNGA 93 TR+ LF+KP ++ D GR T+ +++ + V + GRLD ++EGLL+LTN+G Sbjct: 149 TRLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLTNDGG 208 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L L P + Y V+ +G Q L+ LR G+T+ DG AG E+ Sbjct: 209 LSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITI-DGIHY-AGMEVT--------- 257 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +R+ SWL ++L EG+NR+V+R+ +G RLIR + G + L +L G+ Sbjct: 258 ----FDREQGANSWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQLGDLPEGDVT 313 Query: 214 EV 215 EV Sbjct: 314 EV 315 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 93/201 (46%), Gaps = 23/201 (11%) Query: 18 NHQVKRFSS-QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVY 73 H+V+ FS + R +P R + +KP + T + T+ + P ++ Sbjct: 38 THEVRVFSRVELDERLLQAGKPARYYMLHKPMGCVSA-TRDPQHPTVLDLFPEDLRDDLH 96 Query: 74 AAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND 133 GRLD ++ GL++LTN+G RLT PG R K+YYV+ E Q ++A G+ Sbjct: 97 IGGRLDYNTTGLMLLTNDGQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFR- 155 Query: 134 GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 193 +LV PA L P P ++TL+EGR QV+RM H LR Sbjct: 156 ------FEDLVTLPAQLEPIGP----------RCARLTLHEGRYHQVKRMFGHFDNKVLR 199 Query: 194 LIRYAMGDYSLD-NLANGEWR 213 L R MGD LD L G WR Sbjct: 200 LHRERMGDICLDPQLPPGAWR 220 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 87.0 bits (214), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 87/175 (49%), Gaps = 19/175 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP + + D R T+ + + + +Y GRLDR++ G+L++TN+G L ++L Sbjct: 265 VLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLASKL 324 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P + KIY+V + + + ++ + +GV L+DG V E Sbjct: 325 THPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDL--------- 375 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 S + I ++ GRNR VRR+ H+G+ ++L R + NL G+WR Sbjct: 376 -------SQVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWR 423 >UniRef50_D2UX35 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UX35_NAEGR Length = 362 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 55/179 (30%), Positives = 92/179 (51%), Gaps = 19/179 (10%) Query: 39 TRVILFNKPYDVLPQFTDEAG-RKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGAL 94 ++ ++KP VL D G R+T+ + + G + + GRLD +SEGL++LTN+G L Sbjct: 149 VKLYAYHKPRGVLCSRVDNGGNRETIYQRLERMGFGHLISVGRLDYNSEGLILLTNDGNL 208 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 L P + Y V+V G +Q L++L+ G T+ G A L Sbjct: 209 SRHLELPQTGLERQYLVRVHGQVSQPLLDSLQKGSTI-------EGVHYAGMKATLH--- 258 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R+ TSW+K+ L+EG+NR++R++ + P R++R G Y L+N+ G+ + Sbjct: 259 -----REGEKTSWIKVILHEGKNREIRKIFQQLNLPVSRIMRIQYGPYKLENIQKGQIK 312 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 87.0 bits (214), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 88/179 (49%), Gaps = 18/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ NKP ++ D GR T+ + + + + GRLD+ SEGLL+ TN+ L Sbjct: 87 LMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTEFAQIL 146 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K Y+VQ++ I + + A+ G+ +DG L A A R Sbjct: 147 LDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIR-HDGELLTATAAR--------------R 191 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+ SW+++ L EGRNRQ+RRM +G LRL+R A+G L L G R +T+ Sbjct: 192 LRQGDRNSWIEVELDEGRNRQIRRMLEALGTECLRLVRVAIGGLELGELPKGAVRALTE 250 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 86.7 bits (213), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/197 (32%), Positives = 96/197 (48%), Gaps = 29/197 (14%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVY-AAGRLDRDSEG 84 + RK + +P RVI+++KP + +D GR T+ + +P QG + A GRLD ++EG Sbjct: 247 KPVHRKIQTKPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEG 306 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-----LPA 139 LL+ T +G L RL P + Y V++ G +Q+ L++G+TL+DG Sbjct: 307 LLLFTTSGELANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMG 366 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 G E + W + L EGRNR+VRRM VG RLIR Sbjct: 367 GGEGANR--------------------WYHVALSEGRNREVRRMFEAVGHTVSRLIRTRY 406 Query: 200 GDYSL-DNLANGEWREV 215 G + L L G+W E+ Sbjct: 407 GIFLLPPRLRRGKWEEI 423 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 86.7 bits (213), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 59/181 (32%), Positives = 88/181 (48%), Gaps = 21/181 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI-----PVQGVYAAGRLDRDSEGLLVLTNNGALQA 96 IL NKP + D GRKT+ E I Q VY GRLDR++ GLL+LTN+G L Sbjct: 342 ILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGELAQ 401 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 +L P KIY+V + T+ E + GVTL DG VD ++ Sbjct: 402 KLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDG------VANVDALGYV------ 449 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++ + + I ++ G+NR VRR+ H+ + +L R + N+ G+WR +T Sbjct: 450 ----EAGDKTQVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLT 505 Query: 217 D 217 + Sbjct: 506 E 506 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 12/178 (6%) Query: 43 LFNKPYDVLPQFTDEAGR---KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 L NKP V+ D + + L E + ++ GRLD+++EGLL+LTN+GAL LT Sbjct: 150 LLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALGHDLT 209 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 QP K K Y+ +++G T + + G+TL +G P L+ + Sbjct: 210 QPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKA--------RPGELFVEKTYKGD 261 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +S S +++ ++EG+ QV+RM V L L R MG+ +LD +LA G +R +T Sbjct: 262 SQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLT 319 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 86.3 bits (212), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 87/178 (48%), Gaps = 19/178 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARL 98 IL NKP + DE GRKT+ + + + GRLDR + GLL+LTN+G L +L Sbjct: 215 ILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDGELTKKL 274 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P KIY+V + D ++ + + DG L G VDE +++ + Sbjct: 275 THPTHGVRKIYHVIL------DRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDK----- 323 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 P + + I ++ GRNR VRR+ H+G+ +L R + +L G WR +T Sbjct: 324 -----PKNEIGIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLT 376 >UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas RepID=B4W9R3_9CAUL Length = 519 Score = 86.3 bits (212), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 28/191 (14%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGAL 94 Q TRV ++KP +L +D GR T+ + +P + V + GRLD +EGLL+LTN+G L Sbjct: 143 QATRVWRYHKPAGLLTSHSDPTGRPTVFDALPAGLPRVISVGRLDLATEGLLLLTNDGEL 202 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND---GP---TLPAGAELVDE-- 146 L P + Y + G TQ+ L+ L++GV ++ GP TL E E Sbjct: 203 SRALELPATSLVRQYRARARGKITQEQLDKLKDGVVVDGVSYGPIEATLDKAKESKSEDG 262 Query: 147 --PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 PA L W+ +++ EG+NR+VR++ VG RLIR A G + L Sbjct: 263 RAPANL----------------WISVSITEGKNREVRKVLESVGLTVNRLIRLAYGPFRL 306 Query: 205 DNLANGEWREV 215 D L G EV Sbjct: 307 DVLPIGSVEEV 317 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/179 (32%), Positives = 87/179 (48%), Gaps = 17/179 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKT---LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 L NKP +L D + L E ++ GRLD D+ GLL+LTNNG L +L Sbjct: 64 LLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQLAHQLL 123 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K+ K Y + G+ Q + A G+ L D +LPA ++ + Sbjct: 124 SPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDV----------- 172 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 TS +++ + EG+ QV+RM VG L L R AMG L+ +LA+G+WR +T+ Sbjct: 173 --DQGTSQIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTE 229 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 67/184 (36%), Positives = 95/184 (51%), Gaps = 20/184 (10%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGA 93 P + L KP V+ +D GR T+ + +P + ++ GRLD SEGLL+LT +G Sbjct: 70 PITLALHKKP-GVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGE 128 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWP 152 L RLT P K Y V V G T D L + G+ L +G L P A +V+ PA Sbjct: 129 LALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPA---- 184 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 + +SI L++ L++G NRQ+RRM +G LRL R + G +L +L G Sbjct: 185 ------QDRSI----LEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGAC 234 Query: 213 REVT 216 RE+T Sbjct: 235 RELT 238 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 85.9 bits (211), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 78/160 (48%), Gaps = 21/160 (13%) Query: 60 RKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 R + F P Q G+ AGRLD DS GLLVLT +G + +L + K Y V+VEG Sbjct: 356 RDVAQRFHPSQLKGLAPAGRLDIDSTGLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGEL 415 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 D L L +G++L+D P PA E ++E L+ L EGR Sbjct: 416 VDDGLALLNHGLSLDDKPLRPAKVEWINE-------------------DQLRFVLKEGRK 456 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RQ+RRM VG + L R +G L +L GEWR + D Sbjct: 457 RQIRRMCELVGLRVVGLKRVRIGRVKLGDLPLGEWRYLRD 496 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 85.9 bits (211), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 17/179 (9%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQ 95 PTRV ++KP +L +D GR T+ + +P + V + GRLD +SEGLL+LTN+G L Sbjct: 75 PTRVWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMGRVISVGRLDLNSEGLLLLTNDGELA 134 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 L P + Y V+ G + AL L NG T+ DG VD Sbjct: 135 RVLELPSTGWTRRYRVRAYGNASDKALAELENG-TVVDGVVYGPVEVTVD---------- 183 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 R++ WL + + EG+NR+VR++ VG RL+R A G + L +L GE E Sbjct: 184 ----RRTGANVWLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGSLKRGEISE 238 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 93/192 (48%), Gaps = 21/192 (10%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV---YAAGRLDRDSEGLLV 87 +RK ++P RV+L++KP + D GR ++ + +P A GRLD ++EGLL+ Sbjct: 270 KRKLASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLM 329 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEP 147 LT +G L R P + Y V+V G + + L +GV L+DGP Sbjct: 330 LTTSGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPA----------- 378 Query: 148 AWLWPRNPPIRERKSIPTS-WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-D 205 +L IR+ T+ W + L EGRNR+VRRM G RLIR G SL Sbjct: 379 NFLR-----IRDGGGEGTNHWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPK 433 Query: 206 NLANGEWREVTD 217 L G W E+ D Sbjct: 434 GLKRGRWEELED 445 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 95/184 (51%), Gaps = 12/184 (6%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 +FNKP + D R F + GV+ GRLD+D+EGLL+LTN+G + ++ P Sbjct: 64 MFNKPSGCITATKDNIHRTVFDYFDEDMNGVFHVGRLDKDTEGLLLLTNDGEFEHKVMHP 123 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTL--NDGPTLPAGAELVDEPAWL-WPRNPPI- 157 K K Y+ G + + L+ GV + N+ T PA ++ +++ + PI Sbjct: 124 EKHVEKTYFFWALGSLDDEDKKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKEEIPIN 183 Query: 158 ----RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEW 212 ++ + + + +L T+ EG+ QV+RM VG + L R ++G LD +L G++ Sbjct: 184 SLKNKDHQPVVSGYL--TISEGQKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKMGDY 241 Query: 213 REVT 216 R++T Sbjct: 242 RDLT 245 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 91/179 (50%), Gaps = 22/179 (12%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 LFNKP + D T+ ++I ++ GRLD D+EGLL++TN+GAL L Sbjct: 75 LFNKPSGCVSATCDNV-HDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSHELL 133 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K K YY +++G T D + + G+ + + PT P AELV Sbjct: 134 SPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKP--AELV-------------- 177 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 +KS S +++T+ EG+ QV+RM +G + L R +MG L D+L G +R +T Sbjct: 178 IKKSGSVSEIELTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALT 236 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/145 (34%), Positives = 74/145 (51%), Gaps = 17/145 (11%) Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 +Y GRLD+DS GLL+LTN+G L RLT P K Y V+V+ + L+ L +G+ L Sbjct: 93 IYPVGRLDKDSFGLLLLTNDGDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIML 152 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 T A E++D ++ +K+ L EGRNRQ+R+M + + Sbjct: 153 EGKITRKARFEMLD-----------------FKSNIVKVFLKEGRNRQIRKMFKTLDYNV 195 Query: 192 LRLIRYAMGDYSLDNLANGEWREVT 216 + L R A G L L G +RE++ Sbjct: 196 ISLERIAFGKIKLGKLKVGNYRELS 220 >UniRef50_C6VS09 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VS09_DYAFD Length = 225 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 11/188 (5%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKE--FIPVQGVYAAGRLDRDSEGLLVLTNNGALQ 95 P R + NKP +++ QF + L E F +G +A GRLD SEGLL+LT N + Sbjct: 9 PHRYFIINKPPNMVSQFVSSHDVRLLGELDFDFPEGTHAVGRLDSMSEGLLILTTNKKVT 68 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-----PTLPAGAELVDEPAWL 150 L + Y+V V I + ++ LR G+ + T P E+++ PA L Sbjct: 69 NLLFLGEVPHTRTYWVNVGHIVPPETVQLLRTGIPIRVKGGGYYTTAPCEVEVIERPAIL 128 Query: 151 -WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 W ++ + +P +WL ITL EG+ QVR+M RL+R ++ D L +L Sbjct: 129 PWHQS---EGQPGVPNTWLSITLTEGKYHQVRKMVREANHRCKRLVRASIEDLELGDLPP 185 Query: 210 GEWREVTD 217 G RE+ + Sbjct: 186 GGVREIGE 193 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 29/187 (15%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVY-AAGRLDRDSEGLLVLTNNGALQA 96 RV++++KP + D GR T+ E +P+ +G + A GRLD ++ GLL+ TN+G L Sbjct: 153 RVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDLAN 212 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-----LPAGAELVDEPAWLW 151 RL P + Y V++ G T++ ++L +G+ L DGP + AG E V+ Sbjct: 213 RLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNH----- 267 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANG 210 W ++TL EGRNR+VRRM VG RL+R G L L G Sbjct: 268 ---------------WYRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRG 312 Query: 211 EWREVTD 217 W E+ + Sbjct: 313 MWMELPE 319 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 22/178 (12%) Query: 44 FNKPYDVLPQFTDEAGRKTLKEFIP--VQG---VYAAGRLDRDSEGLLVLTNNGALQARL 98 NKP + +D+ GR + + I V+G ++ GRLD D+EGL++LTN+G L RL Sbjct: 81 LNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLILLTNDGELAHRL 140 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K Y V+G + + L G+ L+DGP +VD Sbjct: 141 MHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVD------------- 187 Query: 159 ERKSIP-TSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +IP + +++TL+EGR R VRR+ GFP L+R +G SL + G R + Sbjct: 188 ---AIPGKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSLGDQRPGCLRAL 242 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 17/176 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 + NKP V+ + G +T+ + + + ++ GRLD+D+ GL++LTN+G +LT Sbjct: 69 MLNKPQGVISASKSKYGEETVVDLLGKKEHRLFPVGRLDKDTTGLIILTNDGDFAYKLTH 128 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y V+G +L+ L+ GV ++ T A LV Sbjct: 129 PKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGV----------- 177 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 S ++ITL EGR RQV++M VG ++L R SL +L GE+R++T Sbjct: 178 ----NSLVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLT 229 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 61/179 (34%), Positives = 91/179 (50%), Gaps = 17/179 (9%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQA 96 T++ ++KP ++ D GR+T+ + IP + V + GRLD SEGLL+LTN+GAL Sbjct: 68 TKLWRYHKPDGLVTTHADPEGRETVFDAIPKDIGRVISIGRLDLTSEGLLLLTNDGALAR 127 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 L P + Y + G ++ AL+ LR GVT+ P E+ Sbjct: 128 ALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEV------------- 174 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ER++ WL++ + EG+NR+VR+ VG RLIR A G + L L GE + V Sbjct: 175 --ERETGSNIWLEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQLEKGEIKSV 231 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 84/178 (47%), Gaps = 17/178 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVY-AAGRLDRDSEGLLVLTNNGALQ 95 Q T+VI+ NK V+ D+ GRK++ +P + + GRLD ++ GLL++TNNG L Sbjct: 63 QETKVIILNKQAGVICSNRDDKGRKSVYSLLPKESRWIMVGRLDLNTSGLLLVTNNGDLA 122 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 +L P + Y V+V G L+ L GV +DG + N Sbjct: 123 NKLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFS---------------KFNQ 167 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEW 212 W K+ L EG+ R+VRR+ +GF RLIR G+ L DNL ++ Sbjct: 168 ITFSGGKGANRWYKVVLREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQY 225 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 17/179 (9%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQA 96 TR+ L++KP ++ D GR T+ E +P + V + GRLD ++EGLL+LTN+G L Sbjct: 163 TRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSR 222 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 L P + Y V+ G TQ L+ L+NG+ ++ AEL Sbjct: 223 VLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAEL------------- 269 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ER W+ I L EG+NR+V+ + +G RLIR + G + L +L G RE+ Sbjct: 270 --ERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREI 326 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/176 (38%), Positives = 91/176 (51%), Gaps = 17/176 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L KP + D GRKT+ +F+P G ++ GRLD D+EGLL+LTN+G L RL Sbjct: 67 LLLFKPRCCVTTARDPQGRKTVFDFVPDAGARLFPVGRLDFDAEGLLLLTNDGLLANRLQ 126 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y V G PT AL+ LR GV L +G T PA ++ PR Sbjct: 127 HPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSS----PR------ 176 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ++ L+I L++G NRQ++RM VG P L + R A G L +L G R + Sbjct: 177 -----STRLRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKLGSLKPGGSRHL 227 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 64/194 (32%), Positives = 99/194 (51%), Gaps = 24/194 (12%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVY-AAGRLDRDSEG 84 R T+R P RV++++KP + D GR T+ E +P+ +G + A GRLD ++ G Sbjct: 172 RFTQRSP-----RVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSG 226 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ TN+G L +L P + Y V++ G T++ +++L +G+ L DG PA L+ Sbjct: 227 LLLFTNDGDLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDG---PAKFNLL 283 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 + E W ++T+ EGRNR+VRRM VG RL+R G L Sbjct: 284 RD------------EGGEGANHWYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVEL 331 Query: 205 -DNLANGEWREVTD 217 L G W E+ + Sbjct: 332 PARLKRGMWMEMPE 345 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 19/175 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP D + D R+T+ + + + +Y GRLDR++ GLL++TN+G L +L Sbjct: 299 VLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLADKL 358 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 + P KIY+V++ +Q L ++ G+ L DG P V + R Sbjct: 359 SHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSK--------R 410 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 E + I ++ G+NR VRR+ H+G+ ++L R G+ + +L G WR Sbjct: 411 E--------VGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLTKKDLPRGRWR 457 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 62/176 (35%), Positives = 86/176 (48%), Gaps = 19/176 (10%) Query: 44 FNKPYDVLPQFTDEAGRKTLKEF---IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 FNKP + E R L ++ +P Q V+ GRLD + GL++LTNNG L RL Sbjct: 106 FNKPVGTVSTMQPEDDRPCLGDWATKLP-QRVFHVGRLDVATAGLILLTNNGDLANRLVH 164 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y V+G + LR GV L DG T +LV+ +R Sbjct: 165 PRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVE-----------VRRG 213 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 SI +++TL+ G+NR VRR+ + VG P L R A+G L +L G +R +T Sbjct: 214 SSI----VQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLGDLKEGHFRLLT 265 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 20/185 (10%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRDSEGLLVLTN 90 N+ + NKP + +D+ GR + + + Q ++ GRLD D+EGLL+LTN Sbjct: 146 NEDLEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTN 205 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L RL P K Y V G + + LR G+ L DGP +++D Sbjct: 206 DGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG- 264 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 S +++ ++EGR VRRM GFP RL+R + L G Sbjct: 265 --------------KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKPG 310 Query: 211 EWREV 215 R + Sbjct: 311 SLRAL 315 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP + + +D R T + + + +Y GRLDR++ GLL+LTN+G L A+L Sbjct: 285 VLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAAKL 344 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P KIY V ++ + + ++ + +G+ L DG VDE Sbjct: 345 MHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNL--------- 395 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + + I ++ GRNR VRR+ H+G+ +L R + +L G WR +T+ Sbjct: 396 -------AIVGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTE 447 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGAL 94 + T I NKP + +DE GR+T+ + + + ++ GRLD+DSEGL++LTN+G L Sbjct: 58 KKTVYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDL 117 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN-------DGPTLPAGAELVDEP 147 +L P ++ K Y V V G+P + ++ L G+T++ + + + +P Sbjct: 118 AQKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKP 177 Query: 148 AWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNL 207 A ++ + K L + + EG+ RQ+R+M +G ++L R L +L Sbjct: 178 AKIFEIGQKQGDMK------LSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELGDL 231 Query: 208 ANGEWREVTD 217 GE+R +++ Sbjct: 232 RPGEFRHLSE 241 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 28/184 (15%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQ------GVYAAGRLDRDSEGLLVLTNNGAL 94 +++ NKP + + G + + + +P + + + GRLD+D+ GL+++T++ L Sbjct: 73 LVMLNKPLGYVCSHDNNEGMR-IYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTKL 131 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWP 152 +LT P K+Y V V+ D +++ GV L +G LPA E+V E Sbjct: 132 VHQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSE------ 185 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 + +TL EG+ QVRRM A G+ L R G Y L +LA GEW Sbjct: 186 -------------NVANVTLNEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQDLAQGEW 232 Query: 213 REVT 216 + V Sbjct: 233 QTVA 236 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 20/182 (10%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-----VYAAGRLDRDSEGLLVLTNNGA 93 TR+ LF+KP ++ D GR T+ +++ + + GRLD ++EGLL+LTN+G Sbjct: 84 TRLFLFHKPRGLVTTEHDPEGRPTVFDYVREHSPEAPRLVSIGRLDINTEGLLLLTNDGG 143 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L L P + Y V+ +G Q L+ LR GVT+ G + A L Sbjct: 144 LARVLELPATGWARRYRVRAKGSIDQPTLDRLRQGVTVE-------GVDYAQIEATL--- 193 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +R WL ++L EG+NR+++R+ H+G RLIR + G + L +L G+ Sbjct: 194 -----DRIQGANCWLTMSLREGKNREIKRVLEHLGLEVNRLIRLSYGPFQLADLEEGKVE 248 Query: 214 EV 215 EV Sbjct: 249 EV 250 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 P + +R+ +F+KP V+ D GR+T+ + +P + V A GRLD ++EGLL+LTN+ Sbjct: 140 PSRERSRLWIFHKPRGVVTTARDPEGRQTVFDVLPEDLPRVVAVGRLDINTEGLLLLTND 199 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L + P + Y V+ G Q L+ L GVT++ P A L Sbjct: 200 GGLAKVIAHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATL-------- 251 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 +R WL + L EG+NR+V+R+ H+G RLIR + G + L +L G Sbjct: 252 -------DRVQGDNVWLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGL 304 Query: 212 WREV 215 EV Sbjct: 305 VEEV 308 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 65/178 (36%), Positives = 88/178 (49%), Gaps = 22/178 (12%) Query: 42 ILFNKPYDVLPQFTD-EAGRKT--LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 I+ NKP + D A K L P +++AGRLD+DSEGL++ +N+G ARL Sbjct: 69 IMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSNDGDYVARL 128 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K+Y V+V LE +R GV L G L A Sbjct: 129 THPRHEILKVYQVRVRREFKPAELEQMRRGV-LERGELLKVHA----------------- 170 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + ++L ITL EG+NR++RR+TA +G PT RL R +G L L G WRE+T Sbjct: 171 VSRCGDCTYL-ITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLGGLPVGNWRELT 227 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 84/177 (47%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L +KP + D GR + + + V+ GRLD D+EGLL+L+N+G +T Sbjct: 62 LLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFSNLMT 121 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y V+G+ D + L GV L DG T PA L+ Sbjct: 122 HPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKG---------- 171 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 S L++ ++EG+ RQ++RM VG +L R A+ +L+ + G++R +T Sbjct: 172 -----QSLLELEIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLT 223 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 24/188 (12%) Query: 33 KPENQPTR--VILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAGRLDRDSEGLLVL 88 +P TR ++LF KP ++ + T+ EF+ PV+ VY GRLD+DSEGLL+L Sbjct: 63 RPVKAETRQVLLLFYKPRGIVCSTKKQRQETTVTEFLDYPVR-VYPVGRLDKDSEGLLLL 121 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN G L R+ + G K Y V V+ T+ + + +GV P L V P Sbjct: 122 TNQGDLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGV-----PILGT----VTRPC 172 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 ++ K+ S+ I L +G NRQ+RRM ++G+ L R + + +LD L Sbjct: 173 TVY---------KTGDKSF-SIILTQGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDGLK 222 Query: 209 NGEWREVT 216 GE+RE+ Sbjct: 223 CGEYREIC 230 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 97/196 (49%), Gaps = 30/196 (15%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLD 79 +V +FS Q N+P + N+ L F+ + + + + ++ GRLD Sbjct: 53 RVAKFSKQIYIMM---NKPKGYVCSNEELASLTVFS------LISDDLKYRDLHTVGRLD 103 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLP 138 +D+EGLL++T++G R+ P KR K Y V++E ++ L NG+ L+DG TLP Sbjct: 104 KDAEGLLIITDDGEYTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYKTLP 163 Query: 139 AGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYA 198 A ++D ++ +K+ +YEG+ QV+RM +G + L R Sbjct: 164 AKYTIID-------------------STTVKLCIYEGKYHQVKRMFEAIGNKVVDLKRLR 204 Query: 199 MGDYSLD-NLANGEWR 213 +G +LD +L GE+R Sbjct: 205 IGGLNLDQSLKPGEYR 220 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 84.0 bits (206), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 27/213 (12%) Query: 15 SFRNHQVKRFSSQRST-------RRKPENQPTRVI-LFNKPYDVLPQFTDEAGRKTLKEF 66 + NH+V S+Q RRKP ++ L NKP + D K + Sbjct: 28 TINNHRVTELSTQVDVDNDEVRYRRKPLVLEKKLYYLLNKPVGYVCTNDDPFAEKKAIDL 87 Query: 67 IPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL 125 +P +G +Y GRLD+ SEGL+VLTN+G L +T P K Y V V+G +Q L+ L Sbjct: 88 LPDKGRLYTVGRLDKPSEGLIVLTNDGDLAKIMTHPSFELEKKYRVTVKGRVSQKKLDYL 147 Query: 126 -RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWL-KITLYEGRNRQVRRM 183 R+G+T ++D R +K +P ++ TL EG+NR++R++ Sbjct: 148 VRDGLTFEG-----VNYRVLDA-----------RIKKQVPGGYMINFTLNEGKNREIRKI 191 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + RL RY + +L L G WR +T Sbjct: 192 CQSLDLQVKRLRRYEIAGIALGKLPPGAWRPMT 224 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 63/207 (30%), Positives = 103/207 (49%), Gaps = 24/207 (11%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPENQPTRVIL-FNKPYDVLPQFTDEAGRKTLKEFI--PV 69 K + + QV+ F + + + + +V+L F+KP + +K + +I P+ Sbjct: 32 KPAVQGMQVEDFQEIKVDGKAIKREEKKVLLVFHKPKGIECTANPNV-KKNVISYINYPI 90 Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 + VY AGRLD+DSEGLL+LTN G L ++ + G K Y V V+ T++ L+++R GV Sbjct: 91 R-VYYAGRLDKDSEGLLLLTNQGELVNQIMKAGSYHEKEYLVTVDKPVTEEFLQSMREGV 149 Query: 130 TLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 + T E E + +ITL +G NRQ+RRM ++G+ Sbjct: 150 PVLGTITRKCKVEKESEKVF-------------------RITLTQGLNRQIRRMCNYLGY 190 Query: 190 PTLRLIRYAMGDYSLDNLANGEWREVT 216 ++L R + + L NL G +RE T Sbjct: 191 EVVKLKRIRIMNIELGNLPIGSYREAT 217 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 18/176 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 +L +KP + T+ L + P + + GRLD+D+EGLL+ T +G L RLT P Sbjct: 65 VLLHKPPGFVTSRTEGPSVYALLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLLLHRLTHP 124 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 + K Y V +E EA R G+ L+ TLPA +++P Sbjct: 125 RHKVAKRYLVHLERPVGPKDQEAFREGILLDGKKTLPAELTPLEDP-------------- 170 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +W ++ L EGR Q++RM G LRL R A+G L +L G+ R +T+ Sbjct: 171 ----TWAEVVLKEGRFHQIKRMFRARGNRVLRLKRLALGPLELGDLPPGKARPLTE 222 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 14/183 (7%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAA-GRLDRDSEGLLVLTNNGAL 94 P +++++KP + D GR ++ + +P G + A GRLD ++ GLL+ TN+GAL Sbjct: 70 PHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTNDGAL 129 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 +L P + Y+V+V G T++ L ALR G+ L+DG L E+ Sbjct: 130 ANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDG--LARFTEICPLKT------ 181 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWR 213 + E + + +TL EGRNR+VRR+ VG RL R G SL +L+ G R Sbjct: 182 --LHEDDTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHR 239 Query: 214 EVT 216 +T Sbjct: 240 LLT 242 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/175 (31%), Positives = 77/175 (44%), Gaps = 19/175 (10%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 LF KP + +DE R + ++ VY GRLD D+ G L +TN+G + Sbjct: 65 LFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEFANLIMH 124 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPRNPPIR 158 P K+Y V V+G+ T+ L G+ L TLP + DE Sbjct: 125 PSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHG--------- 175 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 T+ L I L EG+NRQ+++M VG P RL R +G L L G +R Sbjct: 176 ------TTMLLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKGLTPGTYR 224 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 83/167 (49%), Gaps = 21/167 (12%) Query: 56 DEAGRKTLKEF-----IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYY 110 D GRKTL +F IP + ++ GRLD +SEGLL+LTN+G ++ P K+Y Sbjct: 80 DRFGRKTLTDFLNELKIPYK-LFPVGRLDYNSEGLLILTNDGEFANKVAHPRNEIKKVYK 138 Query: 111 VQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI 170 V+V G +Q+ L+ + G L DG P +++ ++ +WL + Sbjct: 139 VKVAGEVSQETLKKMEEGTILEDGFFKPDKIKML---------------KREEDGTWLLV 183 Query: 171 TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++ G+ R +RR G RLIR +G + NL ++R +++ Sbjct: 184 EIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSE 230 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 95/186 (51%), Gaps = 21/186 (11%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 PE + TR+ L++KP ++ D GR T+ + +P + + + GRLD ++EGLL+LTN+ Sbjct: 530 PERERTRLFLYHKPRGLMTTHADPEGRPTVFDNLPEDLPRLISIGRLDFNTEGLLLLTND 589 Query: 92 GALQARLTQPGKRTG--KIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 G L L P TG + Y V+ G TQ L+ L +GV ++ P A+L Sbjct: 590 GGLARALELP--ETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKL------ 641 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 ER WL + EG+NR+VR + AH+G RLIR + G + L + Sbjct: 642 ---------ERDQGANVWLVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLEIEE 692 Query: 210 GEWREV 215 G+ EV Sbjct: 693 GQVEEV 698 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 82.8 bits (203), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 89/184 (48%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 PE +P R+ ++KP ++ D GR T+ + +P + V GRLD DSEGLL+LTN+ Sbjct: 63 PEIEPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPRVVTVGRLDIDSEGLLLLTND 122 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L L P + Y V+V G + L+ L+ GV + P + Sbjct: 123 GGLARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTI-------- 174 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 ++ + SWL + L EG+NR++RR+ HVG RLIR G + L + G Sbjct: 175 -------DKATRTNSWLTVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGEVPPGG 227 Query: 212 WREV 215 E+ Sbjct: 228 VEEI 231 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 82.8 bits (203), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 94/184 (51%), Gaps = 22/184 (11%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAGRLDRDSEGLLVLTNNG 92 +N+ ++LFNKP ++ + T+ +++ P++ VY GRLD++S+GLL+LTN G Sbjct: 68 KNEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLDYPLR-VYPVGRLDKESQGLLLLTNEG 126 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L ++ + G K Y+V V ++ + + GV + D T P E ++ Sbjct: 127 DLVNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGECSF--- 183 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 +I L +G NRQ+RRM ++G+ +L R + + +LD + GE+ Sbjct: 184 ----------------RIILTQGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDGIREGEY 227 Query: 213 REVT 216 RE+T Sbjct: 228 REIT 231 >UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UKZ1_AKKM8 Length = 230 Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 26/169 (15%) Query: 56 DEAGRKTLKEFIPVQ------GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIY 109 D+ + + +P Q V + GRLD+++ GLL+LT++G R+T P K+Y Sbjct: 74 DDGEGNLIYDLLPFQWRHRNPAVSSVGRLDKETSGLLLLTDDGKFIHRMTSPRHHVAKVY 133 Query: 110 -YVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWL 168 V E IPT+ A+E +G +G T P PA L R P R+++ Sbjct: 134 EAVTEEDIPTE-AVELFASGTLTLNGETRPCA------PALLEIREP----RRAL----- 177 Query: 169 KITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD--NLANGEWREV 215 +TL EG+ QVRRM A VG P L L R ++G LD NL GEW + Sbjct: 178 -LTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPI 225 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 82.4 bits (202), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 64/182 (35%), Positives = 94/182 (51%), Gaps = 26/182 (14%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 I+ NKP V+ D+ T+ + + P + ++ AGRLD+ S G ++LT++GAL Sbjct: 65 IMLNKPEGVVSASRDKR-DTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGALAHD 123 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEA-LRNGVTLNDGPTL-PAGAELVDEPAWLWPRNP 155 L P K Y V ++ P DA+ A GVTL DG T+ PA AE E +P Sbjct: 124 LLSPAHHVDKQYLVTLD-TPLTDAMRAGFAAGVTLADGETMAPAEAEPAGE-------DP 175 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWRE 214 + +K+TL++G Q++RM G L RYA+G +LD LA G+WRE Sbjct: 176 CV----------VKVTLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRE 225 Query: 215 VT 216 +T Sbjct: 226 LT 227 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 P + TR+ L++KP ++ D GR T+ E +P + V GRLD ++EGLL+LTN+ Sbjct: 157 PMRERTRLWLYHKPRGLVTTNKDPEGRPTVFERLPDDLPRVLTVGRLDINTEGLLLLTND 216 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L L P + Y V+ G TQ L+ L++G+ + +G A +D Sbjct: 217 GGLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAI-EGVLYGAIEATLD------ 269 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 ++ W+ + L EG+NR+V+R+ H+G RLIR + G + L +L G+ Sbjct: 270 --------KEQGNNVWMTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQLMDLPEGD 321 Query: 212 WREV 215 RE+ Sbjct: 322 VREI 325 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 17/177 (9%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP V+ +D GR +L +F+ + ++ GRLD ++EGL++LTN+G L RLT Sbjct: 447 LAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLTNDGELANRLT 506 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P K Y+ +V G +D L+ G+ L DG LV E Sbjct: 507 HPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQ---------- 556 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + +++ L+EGR VRRM VG P + L R G L L G R +T Sbjct: 557 -----QALVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGRLKPGTVRALT 608 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 87/181 (48%), Gaps = 21/181 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 IL +K + + D GRKT+ + +P + V+ GRLD SEG+L+LT +G L R Sbjct: 72 ILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLTTDGELCNR 131 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL--PAGAELVDEPAWLWPRNP 155 +T P KIY+V + G ++ L ++NG+ L D L P + + E Sbjct: 132 MTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAISEVG------- 184 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 T+ ++ L +G NRQ+RRM LRL R G L L G+WRE+ Sbjct: 185 --------ETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGALKPGKWREL 236 Query: 216 T 216 + Sbjct: 237 S 237 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/186 (34%), Positives = 93/186 (50%), Gaps = 21/186 (11%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 PE + TR+ L++KP V+ D GR TL E +P + + + GRLD +SEGLL+LTN+ Sbjct: 84 PERERTRLFLYHKPIGVVTTNRDPEGRTTLFELLPGHLPRLVSVGRLDINSEGLLLLTND 143 Query: 92 GALQARLTQPGKRTG--KIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 G L L P TG + Y V+ +G Q L+AL G+ + G E A Sbjct: 144 GGLARVLELP--ETGWLRRYRVRAKGTVDQAQLDALIKGIVVE-------GVEYGPIEAV 194 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 L +R W+ + L EG+NR+VR + +G RLIR + G + L +A Sbjct: 195 L--------DRVQGANVWITVALREGKNREVRNVLGALGLQVNRLIRISYGPFQLGEIAE 246 Query: 210 GEWREV 215 G EV Sbjct: 247 GGVEEV 252 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 88/193 (45%), Gaps = 29/193 (15%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGV--YAAGRLDRDSEGLLVL 88 R+ Q RV+ + KP L D GR T+ + +P ++G A GRLD ++ GLL+ Sbjct: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-----PAGAEL 143 T +G L RL P + + Y V+V G L L GV L DGP +G E Sbjct: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 Query: 144 VDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYS 203 +++ W +TL EGRNR+VRR+ VG RLIR GD Sbjct: 180 INQ--------------------WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIP 219 Query: 204 L-DNLANGEWREV 215 L L G W E+ Sbjct: 220 LPKGLPRGGWTEL 232 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 16/175 (9%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 + NKP ++ D GR + + +P + V+ GRLD SEGL++LTN+G L +L P Sbjct: 88 VVNKPVGIVTTNRDPRGRPRVIDLVPPTERVFPVGRLDISSEGLILLTNDGDLAQKLAHP 147 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 K+Y V V G + ++ +R G+ + +G GA+++ + Sbjct: 148 KFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKII---------------KA 192 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + ++I L EG+NR++RR+ A G +L R A+G L ++ G +R++T Sbjct: 193 RTKATEMEIRLKEGKNREIRRILARFGHKVQQLRRVAIGPLKLGDVPRGAYRKLT 247 >UniRef50_B7G1P9 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G1P9_PHATR Length = 331 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 91/181 (50%), Gaps = 18/181 (9%) Query: 38 PTRVILFNKPYD---VLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGAL 94 P ++ N PYD +L + K K + ++ V GRLD ++EGL+++TN+G Sbjct: 127 PGEIVADNDPYDRPSLLQRLIRGGVGKVGKTRLHLKSV---GRLDMNTEGLILVTNDGKY 183 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 + P + + Y V+V G+ T L +R GVT+ +G P P + P + Sbjct: 184 AREMELPSNKLHRTYRVRVHGLLTDHKLARIRKGVTV-EGIRYP--------PMRIIPES 234 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 R+ +S WLK+T EG+NRQ+R + ++G RLIR + GDY L + G E Sbjct: 235 --TRQSQST-NKWLKVTCTEGKNRQIRNVFKYLGLTVTRLIRISYGDYRLQTIPPGMAIE 291 Query: 215 V 215 V Sbjct: 292 V 292 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 28/182 (15%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVY-AAGRLDRDSEGLLV 87 +RK +++P RV++++KP + D GR T+ + +P G + A GRLD ++EGLL+ Sbjct: 122 QRKNKSKPPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLL 181 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-----PAGAE 142 T++G L RL P + Y V++ G +++ + L G+ L DGP AG E Sbjct: 182 FTSSGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGE 241 Query: 143 LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 + W K+ L EGRNR+VRRM RLIR GD Sbjct: 242 GANR--------------------WYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDI 281 Query: 203 SL 204 + Sbjct: 282 MM 283 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 17/179 (9%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQA 96 TR+ L++KP ++ D GR T+ + +P + V + GRLD ++EGLL+LTN+G L Sbjct: 104 TRLWLYHKPSGLVTTNRDPEGRPTVFDNLPKEMPRVVSVGRLDINTEGLLLLTNDGGLAR 163 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 L P + Y V+ G Q L+ L+NG+ + DG + +D Sbjct: 164 VLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAI-DGIFYGSIDASID----------- 211 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RE+ S WL + L EG+NR+++ +G RLIR + G + L +L G RE+ Sbjct: 212 -REQGS--NVWLSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQLSDLEEGAVREL 267 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 62/160 (38%), Positives = 80/160 (50%), Gaps = 22/160 (13%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 L NKP V+ D GR T++ + VY GRLD DSEGLL+LTN+G L +LT P Sbjct: 69 LLNKPRGVVSSVVDPEGRPTVRSLVATTSRVYPVGRLDVDSEGLLILTNDGPLTYQLTHP 128 Query: 102 GKRTGKIYYVQVE-GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 K Y V V+ +P + E LR GV + DG L A + + PR Sbjct: 129 RFHVPKEYLVWVDRPVPRRLGRE-LREGVEV-DGELLRASSV-----GTVGPR------- 174 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 ++I L EGRNRQ+RRM VG RL+R +G Sbjct: 175 ------LVRIVLTEGRNRQIRRMVGAVGLSVERLVRVRIG 208 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 18/186 (9%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 E + TRV ++KP ++ D R T+ + +P + + + GRLD +SEGLL+LTN+G Sbjct: 79 EPEATRVFRYHKPSGLMTTHNDPKQRPTVFQALPRDLPRLISVGRLDLNSEGLLLLTNDG 138 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND---GPTLPAGAELVDEPAW 149 AL L P + Y + G TQ L+ L++G T+ GP + A + E A Sbjct: 139 ALSRALEMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGP-IEARLDKAQEKAG 197 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 K+I W+ +TL EG+NR+VRR+ +G RLIR + G ++L L Sbjct: 198 GG---------KNI---WITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFALGTLLP 245 Query: 210 GEWREV 215 G+ EV Sbjct: 246 GQVEEV 251 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 61/184 (33%), Positives = 92/184 (50%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNN 91 P + TR+ L +KP V+ D GR T+ + +P + V A GRLD ++EGLL+LTN+ Sbjct: 76 PARERTRLWLLHKPRGVVTTARDPEGRPTVFDGLPEELPRVVAIGRLDINTEGLLLLTND 135 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L + P + Y V+ G TQ L+ L+ G+T++ P A L Sbjct: 136 GGLAKVIAHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATL-------- 187 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 +R WL + L EG+NR+V+R+ H+G RLIR + G + L +L G Sbjct: 188 -------DRAQGDNVWLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLGDLEVGL 240 Query: 212 WREV 215 E+ Sbjct: 241 VEEI 244 >UniRef50_C9RMB6 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMB6_FIBSS Length = 286 Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 65/203 (32%), Positives = 89/203 (43%), Gaps = 37/203 (18%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFI-----------PVQGVYAAGRLDRDSEGLLVLTN 90 + NKP + +DE GR T+ + PV + GRLD SEGLL+ TN Sbjct: 89 FMMNKPRGYVTTASDEKGRATVMDLFREQYAKMFPGKPVPHISPVGRLDAASEGLLLFTN 148 Query: 91 N----GAL-----QARLTQPGKRT---------GKIYYVQVEGIPTQDALEALRNGVTLN 132 + AL + R T+ K KIY VQV G PT + L + G N Sbjct: 149 DTQWADALLKTKDERRKTRDDKCVERESRGPIHTKIYRVQVNGHPTAEELSQMEAG--FN 206 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 P + EP WL+ITL EG+NR++RRM A +G+ L Sbjct: 207 VPP------RVFGEPEEFMHAVSAKLYSAGEKNCWLEITLDEGKNREIRRMLAKLGYEVL 260 Query: 193 RLIRYAMGDYSLDNLANGEWREV 215 RL+R +Y L +L GE R++ Sbjct: 261 RLVRIKFCNYELGDLKQGEIRKI 283 >UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9J5_THEAQ Length = 245 Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/175 (32%), Positives = 84/175 (48%), Gaps = 18/175 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQP 101 +L +KP + + L E P + + GRLD+D+EGLL+ T +G L RLT P Sbjct: 74 LLLHKPAGYVTSRKEGPSVYALLEGFPTRDLSPVGRLDKDTEGLLLFTTDGELLHRLTHP 133 Query: 102 GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERK 161 + K Y V + T + A + G+ L+ TLPA L ++P Sbjct: 134 RHKVEKRYLVHLLHPATAADVRAFQEGILLSGEKTLPARLHLGEDP-------------- 179 Query: 162 SIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +W+++TL EGR QV+RM G L L R A+G +L++L G R +T Sbjct: 180 ----TWVELTLLEGRFHQVKRMFQARGNQVLYLKRLALGPLTLEDLPLGAARPLT 230 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 IL NKP D TD + K+ + + GRLD+ + GLL+ TN+G LQ +L Sbjct: 162 ILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTNDGELQTKL 221 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T+P KIY+ + D LE +R G+ L DGP R I Sbjct: 222 TKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPV----------------RVHEIS 265 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + P + + I + +N ++R+ H+G+ ++L R + +L G+WR +T+ Sbjct: 266 NIEGSPATEVGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLTKKDLPRGQWRTLTE 324 >UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHY6_LIBAP Length = 354 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 17/180 (9%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQA 96 TR+ L++KP ++ +D GR T+ + +P V + GRLD ++EGLL+LTN+G L Sbjct: 73 TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIFSRVISVGRLDINTEGLLLLTNDGGLAR 132 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 L P + ++Y V+ G QD L L+ G+ + G D L Sbjct: 133 VLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQ-------GICYGDMQVTL------ 179 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + + +W+ + L EG+NR+++++ + RLIR + G + L L G REV+ Sbjct: 180 --DTQKGSNAWVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLAGSTREVS 237 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 21/185 (11%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTN 90 RKP +P +++ NKP ++ +D+ + E++ + +Y GRLD+DSEGLL++TN Sbjct: 95 RKP--KPV-LLVVNKPRGIVCTTSDKDRAMNIVEYLDYPERIYPVGRLDKDSEGLLLMTN 151 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 G L ++ + G K Y V V+ T DA++ + G+ L + E V P + Sbjct: 152 QGDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRE-------LETVTRPCKV 204 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 K + I L +G NRQ+RRM G RL+R + + LD L G Sbjct: 205 ----------KRVDGKTFSIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDGLETG 254 Query: 211 EWREV 215 REV Sbjct: 255 ASREV 259 >UniRef50_A6BG46 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A6BG46_9FIRM Length = 216 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 88/186 (47%), Gaps = 13/186 (6%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +F+KP+ + D+ + F +Q + GRLDR++ GLL++T++G +LT Sbjct: 27 MFHKPFGCVTARRDDRYPTVMDYFEELQNDRLSPVGRLDRETTGLLLITDDGIFNQKLTH 86 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA-------GAELVDEPAWLWP- 152 P K Y + G T + + L GV L TL A G ++ + P Sbjct: 87 PSYHKEKTYEFTLLGDLTPELVHKLETGVILKGADTLTAPAKITVTGHAVMSDILSTLPE 146 Query: 153 --RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LAN 209 + + R P ++ IT+ EG+ RQ+RRM V + L R ++GD LD L Sbjct: 147 EIQKDIHKNRPDHPITYGIITISEGKKRQIRRMMKSVHCCVIELKRISIGDIVLDKALCP 206 Query: 210 GEWREV 215 GEW+E+ Sbjct: 207 GEWKEI 212 >UniRef50_B5YMC9 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YMC9_THAPS Length = 365 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 87/186 (46%), Gaps = 21/186 (11%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-------VYAAGRLDRDSEGLLVLT 89 + TRV L NK L D GR ++ + + G + GRLD +EGL++ + Sbjct: 142 KTTRVWLANKLKGELITEDDPDGRPSMLQRLKANGTKHLPTHLKPVGRLDMMTEGLMIFS 201 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 N+G L P + Y V+V G T L A+R GVT+ A E+V Sbjct: 202 NDGQYARNLELPSNHLWRTYRVRVHGRLTLGKLTAMRKGVTVRG-----ASGEVVQSTG- 255 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 ++ +WL+IT EG+NRQ+RR+ +G RLIR + GDY L+++ Sbjct: 256 --------KDVNGSTNTWLQITCTEGKNRQLRRILGSMGLDVTRLIRISYGDYDLNSIPP 307 Query: 210 GEWREV 215 G EV Sbjct: 308 GLAIEV 313 >UniRef50_Q605S3 Pseudouridine synthase n=1 Tax=Methylococcus capsulatus RepID=Q605S3_METCA Length = 231 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 58/170 (34%), Positives = 80/170 (47%), Gaps = 20/170 (11%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV---YAAGRLDRDSEGLLVLTNNGALQ 95 TRV+L++KP L D GR + +P + A GRLD +++GL++LTNNG L Sbjct: 17 TRVLLYHKPVGELVSRRDPEGRPLIFSRLPRLELGRWVAVGRLDVNTQGLILLTNNGELA 76 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRN 154 RL P + Y V++ G ++ +E L +GV L DGP + AE E A Sbjct: 77 HRLMHPSHAVEREYAVRILGTVSEAVIERLLDGVQLEDGPARFESVAEAGGEGA------ 130 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W + + EGRNR VRR+ RLIR GD L Sbjct: 131 ----------NRWFHVVVREGRNRLVRRLWESQNLVVSRLIRVRYGDIVL 170 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 76/151 (50%), Gaps = 22/151 (14%) Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 Q + AGRLD D+ GL++LT+NG R+T P K K Y V++E A++ L GV Sbjct: 104 QSLQIAGRLDVDTTGLVLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGV 163 Query: 130 TLN--DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 L+ TLPA EL+ L +++ EGR QV+RM V Sbjct: 164 MLHGEKAATLPATVELISNTEVL-------------------LSIQEGRFHQVKRMFVKV 204 Query: 188 GFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 G ++L R A+G LD NL G+WR +T+ Sbjct: 205 GTCVVKLHREAIGAIELDTNLKPGQWRHLTN 235 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +L NKP D + D RKT+ + + + +Y GRLDR++ G+L+ TN+G L ++L Sbjct: 381 VLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLASKL 440 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K+Y+V ++ T + L+ + +G+ L DG E NP Sbjct: 441 THPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYA---------NPE-- 489 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + + I ++ G+NR VRR+ +G+ ++L R + N+ G+WR +T+ Sbjct: 490 -----DQAQVGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTE 543 >UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter RepID=Q6F9V5_ACIAD Length = 239 Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 100/215 (46%), Gaps = 21/215 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKP--YDVLPQ-FTDEAGRKT 62 I + + +R H + F+ Q + + +IL NKP ++ Q ++ Sbjct: 33 IQDEIQKDLKYRIHDLTDFNFQVFDQNYVYREKVYIIL-NKPKGFECSHQPHHHQSVFSL 91 Query: 63 LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 L + + + + A GRLD+D+ GLL+LT++G LT P K K+Y+V Sbjct: 92 LPDLLIQRNIAAVGRLDQDTTGLLLLTDDGQYLHTLTHPKKHVPKVYHV----------- 140 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 A + +T++ L G EL +E N + + + L +T+++G QV+R Sbjct: 141 -ATIDPITVDQMHQLEQGVELHNEKGVFAATNVTL-----LNETQLSMTIHQGVYHQVKR 194 Query: 183 MTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 M A VG L R+ +G L NLA GEW +T+ Sbjct: 195 MIAAVGNKVTALHRHKIGQLELPNLAEGEWMYLTE 229 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 80.5 bits (197), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 91/182 (50%), Gaps = 23/182 (12%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQAR 97 + NK D + T++ KT+ +++ + ++ GRLD+++EGLL+ T +G L Sbjct: 65 FMMNKAPDCITA-TEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHY 123 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPP 156 T P K YY ++ T + +G+TL+DG TLPA + D P NP Sbjct: 124 YTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPD------PSNP- 176 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 I T WL+ EG+ RQ+RRM +G L R MG+ LD +L G +RE+ Sbjct: 177 -----HIATVWLR----EGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYREL 227 Query: 216 TD 217 T+ Sbjct: 228 TE 229 >UniRef50_Q30NZ7 Pseudouridine synthase n=3 Tax=Campylobacterales RepID=Q30NZ7_SULDN Length = 228 Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 88/185 (47%), Gaps = 30/185 (16%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQ------GVYAAGRLDRDSEGLLVLTNNGAL 94 VIL NKP+ V+ +D + +P + V GRLD D+ G ++L+++GAL Sbjct: 64 VILMNKPHGVVCSHSDSG--VLIYSLLPPRWQRRNPKVSTIGRLDIDTTGAILLSDDGAL 121 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG---PTLPAGAELVDEPAWLW 151 +LT P KIY V + D E +G L +G P LPA E++ Sbjct: 122 NHKLTSPKSEVTKIYEVTLAQALRGDEAEIFASGELLLNGEKKPLLPAKMEVIG------ 175 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 PI R + + EGR QV+RM A VG L R + GD+S+++L E Sbjct: 176 ----PIHVR---------VEICEGRYHQVKRMFASVGNRVTALHRASFGDFSVEDLKPSE 222 Query: 212 WREVT 216 +RE++ Sbjct: 223 FREIS 227 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 79/146 (54%), Gaps = 19/146 (13%) Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 ++ GRLD+ S+GL+ LTN+G + ++ + G K Y V+V+ T + ++A+ +GV + Sbjct: 98 IFPIGRLDKPSDGLIFLTNDGDIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNI 157 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 D TLP ++ E + + +I L +G NRQ+RRM +G+ Sbjct: 158 LDTVTLP--CKVTQETKFSF-----------------RIVLTQGLNRQIRRMCEALGYEV 198 Query: 192 LRLIRYAMGDYSLDNLANGEWREVTD 217 +L R + + SLD + NG+WR +TD Sbjct: 199 FKLRRVRIMNISLDGIPNGKWRYLTD 224 >UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0G8_HALNC Length = 369 Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 59/173 (34%), Positives = 83/173 (47%), Gaps = 28/173 (16%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVY-AAGRLDRDSEGLLVLTNNGALQA 96 RVI+++KP + +D GR T+ +P QG + GRLD ++ GLL+ TN+G L Sbjct: 66 RVIIYHKPEGEITSTSDPEGRPTVFGSLPAIRQGRWITVGRLDFNTSGLLLATNDGELAN 125 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT-----LPAGAELVDEPAWLW 151 RL P + + Y V+V G T+D ++ L V L+DGP AG V+ Sbjct: 126 RLMHPSHQIERTYAVRVLGGLTEDQVKQLTTEVQLDDGPAHFDQLSDAGGTGVNR----- 180 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W +TL EGRNR++RRM VG RLIR + L Sbjct: 181 ---------------WYHVTLREGRNREIRRMIEAVGAVVSRLIRISYAGIPL 218 >UniRef50_Q4Z2R8 Pseudouridine synthetase, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q4Z2R8_PLABE Length = 318 Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 58/189 (30%), Positives = 95/189 (50%), Gaps = 21/189 (11%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQG--VYAAGRLDRDSEGLLVLTNNGALQA 96 I+ +KP ++ DE RK++ P +Q + + GRLDR++ G+L+ TN Sbjct: 125 IVMHKPKGLICTNQDEKDRKSIFSIFPDDLLQKYRIVSVGRLDRNTSGVLLFTNEYTWVN 184 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND--------GPTLPAGAELVDEPA 148 +LT P + Y + +EG DAL+ L NGV L D T PA E++ E Sbjct: 185 KLTHPKYERVRKYMIHIEGPVRMDALKMLANGVYLKDEDNNKKKKKKTQPAFIEVLREE- 243 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 N I+ + + L I++ EGRNRQ+R+M + P +++ R A + +L N+ Sbjct: 244 -----NVKIQNQIK-KITVLNISIKEGRNRQIRKMFQQINQPIVKIKRTAFENITLKNIH 297 Query: 209 N-GEWREVT 216 ++RE+T Sbjct: 298 LPKQYRELT 306 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 80.1 bits (196), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 75/145 (51%), Gaps = 18/145 (12%) Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 Q +AAGRLD+DSEGLL++TN+G ++ P K+ K Y V+V + ++ + +G+ Sbjct: 91 QRFFAAGRLDKDSEGLLIITNDGIFTNQIIHPSKKLDKTYIVRVSRLLNKEECQQFESGI 150 Query: 130 TLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVG 188 + D T + EL+D+ + + K+T+++G NRQ+RRM A+ Sbjct: 151 DIGDSEMTSDSRIELIDKTSKTY-----------------KVTIHQGYNRQIRRMFAYFS 193 Query: 189 FPTLRLIRYAMGDYSLDNLANGEWR 213 L R ++G LD + E R Sbjct: 194 SEVKMLKRISIGPIKLDGMKPYEKR 218 >UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales RepID=Q2G8T2_NOVAD Length = 270 Score = 79.7 bits (195), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 23/185 (12%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKT----LKEFIPVQG---VYAAGRLDRDSEGLLVLTN 90 P R+ F+KP ++ D GR T L+ +P QG V GRLD ++EGLL++TN Sbjct: 87 PPRLFRFHKPSGLITAERDPTGRPTIYTALRNALP-QGTPRVMPVGRLDVNTEGLLLMTN 145 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L+ L P + Y + G +Q LE L G+ ++ A L Sbjct: 146 DGELKRALELPSTGIPRTYRARTFGDISQARLEELMEGIEIDGVRYGSINANL------- 198 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 ER + W+++TL EG+NR+VRR+ H+G RL+R G + L +L G Sbjct: 199 --------ERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYGPFELADLPRG 250 Query: 211 EWREV 215 E+ Sbjct: 251 AAEEI 255 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 79.7 bits (195), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 58/183 (31%), Positives = 83/183 (45%), Gaps = 19/183 (10%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGA 93 +P RVIL++KP + D GR ++ +P + GRLD ++EGLL+ T +G Sbjct: 182 KPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGD 241 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 + R+ P T + Y V+V G ++L G+ L DG + + Sbjct: 242 MANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDG----- 296 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEW 212 W ++TL EGRNR+VRRM VG RLIR GD L L G W Sbjct: 297 ----------SNRWYRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRW 346 Query: 213 REV 215 E+ Sbjct: 347 EEL 349 >UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S9T3_SHEAM Length = 254 Score = 79.3 bits (194), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 91/202 (45%), Gaps = 12/202 (5%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRV---ILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA 74 +H + F S R T P + L++KP + + E + ++ Sbjct: 44 SHSDRVFDSNRVTVDGAPLCPAQAKAYFLYHKPVGIDCRLRAEDPHSLIHCLPGDLRLFP 103 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 AGRLD+DS GLL+LTN+G L RL P K Y + + P D + A+ G +G Sbjct: 104 AGRLDKDSRGLLLLTNDGELTQRLMHPDFHHQKGYLITLNKAPQPDDIAAIAAGFDYGEG 163 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 PT P E + + P RK L++ L EG+ RQ+RR+ G+ L L Sbjct: 164 PTRPCVVEAAIDCGYATEDGNP---RK------LRMRLTEGKKRQIRRLWRARGYRVLDL 214 Query: 195 IRYAMGDYSLDNLANGEWREVT 216 +R ++ ++ L GE R +T Sbjct: 215 LRESIQQLNIGKLEQGEIRSLT 236 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 19/179 (10%) Query: 42 ILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 I+ NKP + + D R T+ + + + +Y GRLDR++ G+L+LTN+G L ++L Sbjct: 321 IVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTNDGDLASKL 380 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P + KIY+V ++ + +E + NG+ L DG E Sbjct: 381 THPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDD---------- 430 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 S + I ++ GRNR VRR+ +G+ +L R + NL G+WR + + Sbjct: 431 ------KSQVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNE 483 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 80/179 (44%), Gaps = 17/179 (9%) Query: 40 RVILFNKPYDVLPQFTDEAGR--KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 R ++ NKP + DE GR + ++ GRLD ++ GLL+LTN+G L Sbjct: 86 RYLMLNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTNDGDLAHV 145 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 L P K Y +V G T ++ L GV L DGP A ++ Sbjct: 146 LAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGG--------- 196 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + ++ITL+ GRNR VRRM VG P L+R G L +L G R++T Sbjct: 197 ------DQTLVEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLT 249 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E... 293 4e-78 UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E... 249 4e-65 UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E... 246 4e-64 UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E... 246 5e-64 UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E... 241 9e-63 UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae ... 236 3e-61 UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E... 236 3e-61 UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testost... 230 2e-59 UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandens... 230 3e-59 UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q... 227 2e-58 UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella dranco... 226 3e-58 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 226 4e-58 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 225 8e-58 UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr06... 224 1e-57 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 224 2e-57 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 224 2e-57 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 223 3e-57 UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q... 221 1e-56 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 220 3e-56 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 219 4e-56 UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 219 6e-56 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 219 7e-56 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 216 4e-55 UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumo... 215 8e-55 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 214 1e-54 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 214 2e-54 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 214 2e-54 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 214 2e-54 UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 214 2e-54 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 213 4e-54 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 211 1e-53 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 211 1e-53 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 210 3e-53 UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 210 3e-53 UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter Re... 210 3e-53 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 210 3e-53 UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 209 4e-53 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 209 5e-53 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 209 7e-53 UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales R... 208 8e-53 UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria ... 208 8e-53 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 208 8e-53 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 208 1e-52 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 207 2e-52 UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 207 2e-52 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 207 2e-52 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 207 2e-52 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 206 3e-52 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 206 4e-52 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 206 6e-52 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 205 6e-52 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 205 7e-52 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 205 9e-52 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 205 1e-51 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 205 1e-51 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 204 1e-51 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 204 1e-51 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 204 1e-51 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 204 1e-51 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 204 1e-51 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 204 2e-51 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 204 2e-51 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 203 3e-51 UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepI... 203 3e-51 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 203 3e-51 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 203 3e-51 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 203 4e-51 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 203 4e-51 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 203 5e-51 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 202 6e-51 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 202 6e-51 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 202 6e-51 UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E... 201 1e-50 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 201 1e-50 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 201 1e-50 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 201 1e-50 UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter Re... 201 1e-50 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 201 1e-50 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 201 1e-50 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 201 2e-50 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 201 2e-50 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 201 2e-50 UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 201 2e-50 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 201 2e-50 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 201 2e-50 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 200 2e-50 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 200 2e-50 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 200 2e-50 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 200 2e-50 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 200 3e-50 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 200 3e-50 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 199 3e-50 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 199 4e-50 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 199 4e-50 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 199 4e-50 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 199 4e-50 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 199 5e-50 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 199 5e-50 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 199 5e-50 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 199 5e-50 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 199 5e-50 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 199 7e-50 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 199 7e-50 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 199 7e-50 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 198 8e-50 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 198 1e-49 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 198 1e-49 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 198 1e-49 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 198 1e-49 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 198 1e-49 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 198 1e-49 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 198 1e-49 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 198 2e-49 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 198 2e-49 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 198 2e-49 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 198 2e-49 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 198 2e-49 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 197 2e-49 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 197 2e-49 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 197 2e-49 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 197 2e-49 UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2... 197 2e-49 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 197 2e-49 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 197 2e-49 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 196 3e-49 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 196 6e-49 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 195 7e-49 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 195 7e-49 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 195 8e-49 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 195 8e-49 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 195 8e-49 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 195 9e-49 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 195 1e-48 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 194 1e-48 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 194 1e-48 UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdello... 194 1e-48 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 194 2e-48 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 194 2e-48 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 194 2e-48 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 194 2e-48 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 194 2e-48 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 193 3e-48 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 193 3e-48 UniRef50_Q4FV02 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 193 3e-48 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 193 3e-48 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 193 4e-48 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 193 5e-48 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 192 6e-48 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 192 6e-48 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 192 7e-48 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 192 7e-48 UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID... 192 8e-48 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 192 8e-48 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 191 9e-48 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 191 1e-47 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 191 1e-47 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 191 1e-47 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 191 1e-47 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 191 1e-47 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 191 2e-47 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 191 2e-47 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 191 2e-47 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 191 2e-47 UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 191 2e-47 UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 190 2e-47 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 190 2e-47 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 190 2e-47 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 190 2e-47 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 190 2e-47 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 190 2e-47 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 190 3e-47 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 190 3e-47 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 189 4e-47 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 189 4e-47 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 189 4e-47 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 189 4e-47 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 189 5e-47 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 189 5e-47 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 189 5e-47 UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3... 189 6e-47 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 189 6e-47 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 189 7e-47 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 189 8e-47 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 188 9e-47 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 188 1e-46 UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus... 188 1e-46 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 188 1e-46 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 188 1e-46 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 188 1e-46 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 188 1e-46 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 188 1e-46 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 188 1e-46 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 188 1e-46 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 188 1e-46 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 188 1e-46 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 188 2e-46 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 187 2e-46 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 187 2e-46 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 187 2e-46 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 187 2e-46 UniRef50_C6W5I1 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 187 2e-46 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 187 2e-46 UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventr... 187 2e-46 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 187 2e-46 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 187 2e-46 UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=... 187 2e-46 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 187 3e-46 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 186 4e-46 UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis exc... 186 5e-46 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 186 5e-46 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 186 6e-46 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 186 6e-46 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 186 6e-46 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 186 7e-46 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 185 7e-46 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 185 8e-46 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 185 8e-46 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 185 8e-46 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 185 8e-46 UniRef50_Q2NZN4 Pseudouridine synthase n=13 Tax=Xanthomonadaceae... 185 9e-46 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 185 9e-46 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 185 1e-45 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 185 1e-45 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 184 1e-45 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 184 1e-45 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 184 1e-45 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 184 2e-45 UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas Rep... 184 2e-45 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 184 2e-45 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 184 2e-45 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 184 2e-45 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 184 2e-45 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 183 3e-45 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 183 3e-45 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 183 3e-45 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 183 3e-45 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 183 3e-45 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 183 4e-45 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 183 4e-45 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 183 4e-45 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 183 5e-45 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 183 5e-45 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 183 6e-45 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 182 6e-45 UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax... 182 7e-45 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 182 8e-45 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 182 8e-45 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 182 8e-45 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 182 9e-45 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 181 1e-44 Sequences not found previously or not previously below threshold: >UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Enterobacteriaceae RepID=RLUE_SALTY Length = 221 Score = 293 bits (750), Expect = 4e-78, Method: Composition-based stats. Identities = 179/215 (83%), Positives = 198/215 (92%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 MRQ I SENTMQKTSFRNH VKRFSS+++++ + ENQP RV+LFNKPYDVLPQFTDEAGR Sbjct: 1 MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGR 60 Query: 61 KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +TLK+FIPVQGVYAAGRLDRDSEGLLVLTN+GALQARLTQPGKRTGKIYYVQVEGIP Sbjct: 61 RTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNA 120 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL+ALR GVTLNDGPTLPAG E+V EP WLWPR PPIRERK+IPTSWLK+TLYEGRNRQV Sbjct: 121 ALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQV 180 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RRMTAHVG PTLRLIRY+MGDY+L+ L NG+WRE+ Sbjct: 181 RRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREI 215 >UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E n=61 Tax=Bacteria RepID=RLUE_PASMU Length = 241 Score = 249 bits (637), Expect = 4e-65, Method: Composition-based stats. Identities = 127/219 (57%), Positives = 155/219 (70%), Gaps = 13/219 (5%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQP-------------TRVILFNKPYDVLPQFTDEA 58 QKT R ++ + +++ KP+ +P T+VILFNKPYDVL QF+DE Sbjct: 9 QKTKPRPSSLRSVNKRKAAEIKPQKRPLSFRQKKTVNFAETQVILFNKPYDVLTQFSDEE 68 Query: 59 GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 GR TLK FIP+ VY AGRLDRDSEGL++LTNNG +Q RL P T K Y+ QVEGIP Sbjct: 69 GRATLKAFIPIPHVYPAGRLDRDSEGLVLLTNNGEIQHRLAVPKFNTEKTYFAQVEGIPQ 128 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L LR GV LNDG TLPA LV EP WLW RNPPIRERK IPTSWL+I ++EGRNR Sbjct: 129 ETDLAQLRQGVVLNDGKTLPAKVRLVPEPNWLWQRNPPIRERKQIPTSWLEIKIHEGRNR 188 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 QVRRMTAH+GFPTLRLIRY M ++L NL G++R++++ Sbjct: 189 QVRRMTAHIGFPTLRLIRYQMALFNLANLEQGQYRQLSE 227 >UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E n=107 Tax=Bacteria RepID=RLUE_VIBCH Length = 241 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 130/202 (64%), Positives = 155/202 (76%), Gaps = 1/202 (0%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYA 74 S N + + S +R +VILFNKPYD L QFTD GRKTL ++IP++ VYA Sbjct: 40 SVANKKKNATQTALSPKRPLSPAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYA 99 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 AGRLDRDSEGLL+LTN+G LQARLTQP + K Y+VQVEG P + LEALR+GVTL DG Sbjct: 100 AGRLDRDSEGLLILTNDGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDG 159 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 PTLPA +++ EP LWPRNPP+R R +IPT+WL ITL EGRNRQVRRMTAH+GFPTLRL Sbjct: 160 PTLPAKVDIMPEP-TLWPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRL 218 Query: 195 IRYAMGDYSLDNLANGEWREVT 216 IRY+MGD++L +L GEWREVT Sbjct: 219 IRYSMGDWNLGDLQPGEWREVT 240 >UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Proteobacteria RepID=RLUE_PSEAE Length = 189 Score = 246 bits (628), Expect = 5e-64, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNG 92 K +++LFNKP+DVL QF DE GR TLK+FIPV GVY AGRLDRDSEGLL+LTN+G Sbjct: 3 KAPPSEPKLLLFNKPFDVLTQFNDEQGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTNDG 62 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 LQAR+ P + K Y+VQVEG P ++ L LR GVTLNDGPTLPA A L+DEP LW Sbjct: 63 RLQARIADPRHKLPKTYWVQVEGTPDEEQLRRLREGVTLNDGPTLPAEARLLDEP-TLWE 121 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 R PP+R RKS+PT WL++ + EGRNRQVRRMTA VG PTLRL+R +G +SLD L GEW Sbjct: 122 RVPPVRFRKSVPTHWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWSLDGLGLGEW 181 Query: 213 REV 215 REV Sbjct: 182 REV 184 >UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E n=26 Tax=Bacteria RepID=Q1QUR9_CHRSD Length = 257 Score = 241 bits (617), Expect = 9e-63, Method: Composition-based stats. Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 1/183 (0%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 P + + L +KPY +L QFTD GR TL E I V +Y AGRLD DSEGLL+LT +GA Sbjct: 55 PRPPMSSLYLLHKPYQMLSQFTDTRGRATLAEAIDVPDIYPAGRLDYDSEGLLLLTGDGA 114 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L R++ P + K Y+VQVEG P AL+ALR GVTL DGPT PA ++ P + PR Sbjct: 115 LAHRISHPRHKQPKTYWVQVEGEPEPAALQALRQGVTLRDGPTRPAKVRRLESPD-VAPR 173 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +PP+R R+++PT+WL++TL EGRNRQVRRMTAHVG PTLRLIR A+G + L LA GEWR Sbjct: 174 HPPVRHREAVPTAWLELTLSEGRNRQVRRMTAHVGHPTLRLIRVAIGSWHLAGLAPGEWR 233 Query: 214 EVT 216 T Sbjct: 234 RET 236 >UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae RepID=B3GZS7_ACTP7 Length = 232 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 110/211 (52%), Positives = 141/211 (66%), Gaps = 6/211 (2%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPEN-----QPTRVILFNKPYDVLPQFTDEAGRKTLKEF 66 QK R+ K + Q T+++P + T V+LFNKP+DVL QFTDE GR+TLK+F Sbjct: 9 QKNKPRSATNKP-NLQNRTKKRPLKLQLSFEDTVVVLFNKPFDVLTQFTDEQGRQTLKDF 67 Query: 67 IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 126 IP+ +Y GRLDRDSEGLL+LTNNG +Q RL P K Y QVEGIP L L Sbjct: 68 IPIPQIYPVGRLDRDSEGLLLLTNNGEIQHRLANPKFEKQKTYLAQVEGIPQAADLAKLE 127 Query: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186 GV L DG T PA A+ + P + W P IRERK+IPTSW+++ ++EG+NRQVRRMTAH Sbjct: 128 KGVELKDGLTKPAKAKAISAPNYEWQTAPKIRERKTIPTSWIELKIHEGKNRQVRRMTAH 187 Query: 187 VGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +GFPTLRLIR +G + L L +GE+R + + Sbjct: 188 IGFPTLRLIRIGLGQFQLGELNSGEYRVLDE 218 >UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E n=244 Tax=Bacteria RepID=RLUE_VIBPA Length = 238 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 115/179 (64%), Positives = 143/179 (79%), Gaps = 1/179 (0%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQA 96 Q +VI+FNKPYD L QFTD GRKTL ++IPV+ VYAAGRLDRDSEGL+VLTN+G LQA Sbjct: 59 QNRKVIIFNKPYDTLSQFTDGDGRKTLADYIPVKDVYAAGRLDRDSEGLMVLTNDGILQA 118 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 +LTQP ++ K Y+VQV+G P + LE LR GV L DG TLPA E++D P +W RNPP Sbjct: 119 KLTQPKSKSPKTYWVQVDGAPQEQDLEKLRKGVELKDGMTLPAKVEVIDAP-TIWERNPP 177 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +R R +IPT+WL IT+ EGRNRQVRRMTAH+GFPTLRL+RY+MGD +L +L G+W+E+ Sbjct: 178 VRFRANIPTTWLAITIIEGRNRQVRRMTAHIGFPTLRLVRYSMGDITLGDLQPGQWKEI 236 >UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testosteroni RepID=D0IWI1_COMTE Length = 223 Score = 230 bits (587), Expect = 2e-59, Method: Composition-based stats. Identities = 110/200 (55%), Positives = 142/200 (71%), Gaps = 9/200 (4%) Query: 22 KRFSSQRSTR-------RKPENQP--TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV 72 + FSS RS+ R+P +P TR++ F+KPY VL QFT E + LK++I V GV Sbjct: 15 RPFSSNRSSNLRRSTVVRQPAPRPGVTRLLCFHKPYGVLSQFTPEGKWQGLKDWIDVPGV 74 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 Y AGRLD DSEGLL+LTN+G LQAR+ P + K Y+VQVEGIP + AL+ LR GV L+ Sbjct: 75 YVAGRLDADSEGLLLLTNDGQLQARIADPRHKMEKTYWVQVEGIPDEAALQRLREGVELS 134 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 DG TLPA A L++ +WPRNPPIR R++IP W+++ + EGRNRQVRRMTA VG PTL Sbjct: 135 DGKTLPAKARLIEPQPLMWPRNPPIRVRQNIPDCWIELIIREGRNRQVRRMTAAVGHPTL 194 Query: 193 RLIRYAMGDYSLDNLANGEW 212 RL+R A+G YS++ L G+W Sbjct: 195 RLVRMAVGPYSIEGLEPGQW 214 >UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BDP6_9GAMM Length = 228 Score = 230 bits (587), Expect = 3e-59, Method: Composition-based stats. Identities = 105/177 (59%), Positives = 134/177 (75%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +R +LFNKP+ VL QFTD R+TL +FI V VY+AGRLD DSEGLL+LT++GAL + Sbjct: 2 SRYLLFNKPFQVLTQFTDPDNRQTLADFIDVPEVYSAGRLDYDSEGLLLLTDDGALIHSM 61 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P +T K Y QVEG T +A+ L +G+ L DGPTLPA A V EPAWLWPR PPIR Sbjct: 62 MNPRFKTPKTYLAQVEGDITDEAIRRLESGLQLKDGPTLPAKARRVSEPAWLWPRQPPIR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ER +IP SW+++TL EGRNRQVRRMTA VGFPTLRLIR A+ + ++++L+ G+++EV Sbjct: 122 ERATIPASWVELTLVEGRNRQVRRMTAAVGFPTLRLIRVALAELTVESLSVGQYKEV 178 >UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q1GHH2_SILST Length = 221 Score = 227 bits (579), Expect = 2e-58, Method: Composition-based stats. Identities = 112/181 (61%), Positives = 142/181 (78%), Gaps = 4/181 (2%) Query: 39 TRVILFNKPYDVLPQFTDEAG----RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGAL 94 +R+I FNKP+DVLPQFTD R TL +++ GVY AGRLDRDSEGL++LT+NG L Sbjct: 2 SRLIRFNKPFDVLPQFTDRGSEGSPRATLSDYVDCPGVYPAGRLDRDSEGLMLLTDNGRL 61 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 QA ++ P + K Y+VQVEGIPT+DAL+ALR GV L DG T PA AEL+ EPA LW R Sbjct: 62 QAWISDPKHKLEKTYWVQVEGIPTEDALKALRQGVDLKDGMTRPAKAELISEPAQLWART 121 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 PPIRERKS+PT+WL++ + EG+NRQVRRMTA +G+PTLRLIRYA+G ++LD LA G+W + Sbjct: 122 PPIRERKSVPTAWLELKISEGKNRQVRRMTAAMGYPTLRLIRYAIGAWTLDGLAQGKWDD 181 Query: 215 V 215 + Sbjct: 182 L 182 >UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZI4_9GAMM Length = 240 Score = 226 bits (578), Expect = 3e-58, Method: Composition-based stats. Identities = 102/173 (58%), Positives = 126/173 (72%), Gaps = 1/173 (0%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +ILFNKP+ V+ QFT E TL EFI YAAGRLD++SEGLL+LTN+GALQ +LT Sbjct: 55 LILFNKPFAVVCQFTGEKHEHTLAEFIDKPDFYAAGRLDKNSEGLLLLTNDGALQHQLTH 114 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y+VQVEGIPT LE L+ G+ L D LPA ++EPA LWPR PP+R R Sbjct: 115 PKFNKKKYYWVQVEGIPTAADLEPLKKGLVLKDITFLPAEVRCIEEPA-LWPRTPPVRFR 173 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +SIPTSWL+I L EG+N QVRRMTA +GFPTLRL+R+ +GD+ L +L GE+R Sbjct: 174 QSIPTSWLEIILREGKNHQVRRMTAAMGFPTLRLVRHRIGDWQLGDLQPGEFR 226 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 226 bits (577), Expect = 4e-58, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 18/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + I+ + +++ + + + QP ++ NKP +V+ D GR T Sbjct: 28 RVTINGSVVKELGTKVDPARDHVKVDGKHLRAA-QPYVYLILNKPKNVMSTLDDPEGRPT 86 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +K+ + V+ GRLD DSEGL++LTN+G L L P K Y ++V+G+ Sbjct: 87 VKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDLAQALLHPRYHVPKTYLIKVKGVLDDA 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +EAL GV L DG T PA + V ++ SWL++T++EGR QV Sbjct: 147 KIEALERGVKLEDGFTAPAKVKKVS---------------RAESNSWLEVTIHEGRKHQV 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RM VG ++L+R MG L +LA E+R +TD Sbjct: 192 KRMVEAVGHSVIKLVRVRMGPLLLGDLAPREYRFLTD 228 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 225 bits (574), Expect = 8e-58, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + K + KP + +L +KP + D GR+ Sbjct: 28 RVTVNGQVVTELGSKADPAKDLIALDGQPVKPA-ETFYYVLLHKPAGYVTSLKDPQGRQL 86 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + E + + ++ GRLD +SEGLL+LTN+GA RL P + K Y+V+V G Sbjct: 87 VTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANRLMHPRHQVDKEYHVRVRGKIDPQ 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ L +GV L DGPT L+ + WL +T+ EGRNRQV Sbjct: 147 QIKKLADGVELEDGPTGATTVRLL---------------KNDQSNDWLSVTIREGRNRQV 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM A VG +RL R G+ +L L GE+R ++ Sbjct: 192 RRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYRLLS 227 >UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr0612 n=16 Tax=Bacteria RepID=Y612_SYNY3 Length = 261 Score = 224 bits (572), Expect = 1e-57, Method: Composition-based stats. Identities = 103/200 (51%), Positives = 128/200 (64%), Gaps = 20/200 (10%) Query: 36 NQPTRVILFNKPYDVLPQFTDE--AGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 N+ + I+F KPY VL QFTD R TLK++I + +Y GRLD+DSEGLL+LT+NG Sbjct: 36 NKTPQTIVFYKPYGVLCQFTDNSAHPRPTLKDYINLPDLYPVGRLDQDSEGLLLLTSNGK 95 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 LQ RL + Y+ QVEG PT + LE LR G+T D PT PA A+++ EP + PR Sbjct: 96 LQHRLAHREFAHQRTYFAQVEGSPTDEDLEPLRRGITFADYPTRPAIAKIITEPDF-PPR 154 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM---------GD--- 201 NPPIR R SIPTSWL ITL EGRNRQVRRMTA VGFPTLRL+R + G Sbjct: 155 NPPIRYRASIPTSWLSITLTEGRNRQVRRMTAAVGFPTLRLVRVQIQVTGRSPQQGKGKS 214 Query: 202 -----YSLDNLANGEWREVT 216 +L+ L+ G+WR +T Sbjct: 215 AATWCLTLEGLSPGQWRPLT 234 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 57/205 (27%), Positives = 100/205 (48%), Gaps = 21/205 (10%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGV 72 + + V + T + + I+ NKP + D+ GR + + + + + Sbjct: 43 TVTCNDVVTVDGKPVTTEEAK----VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRL 98 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 Y GRLD D+ GL++LTN+G RLT P K+Y + G P ++ + G+ ++ Sbjct: 99 YPVGRLDYDTSGLILLTNDGDFTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKID 158 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 D T PA E++++ + ++IT++EG+NRQVR+M +G L Sbjct: 159 DYQTSPAEFEVLNKKGI---------------NTLVRITIHEGKNRQVRKMCEAIGHKVL 203 Query: 193 RLIRYAMGDYSLDNLANGEWREVTD 217 L R +G +L+NL G+WR ++D Sbjct: 204 TLKRIQIGPIALENLPEGKWRHLSD 228 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 70/213 (32%), Positives = 101/213 (47%), Gaps = 18/213 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 I+ +++ R + + R + KP V+ D GR+T+ Sbjct: 34 INGTVVREQGVRVDGARDV-IEVDGRILKRREAPLYYALYKPRGVVTTCKDPQGRQTVIG 92 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 + + VY GRLDRD+EGLL+LTN+G L RLT P K Y ++ G + AL+ Sbjct: 93 LLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAFRLTHPRFGVEKTYRARLRGDVSAGALK 152 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 AL GV L DG T PA L+ R+ +W++I ++EGR RQ+RRM Sbjct: 153 ALAEGVQLEDGVTAPAQVRLL---------------RREGDATWIEIKIHEGRKRQIRRM 197 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +G P + L R A G +L L GE R +T Sbjct: 198 GDAIGHPVIDLERIAFGPITLGKLKPGEVRPLT 230 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 223 bits (569), Expect = 3e-57, Method: Composition-based stats. Identities = 76/205 (37%), Positives = 99/205 (48%), Gaps = 19/205 (9%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQ 70 HQ + R +NQ ILFNKP V+ +D GR+ + +F+ + Sbjct: 40 GVKVNPHQ----DVIKVDGRAIQNQEKIYILFNKPKGVITSVSDPEGRRVVGDFLKGIKE 95 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 VY GRLD D+EGLL+LTN+G +T P K Y+ V+G+P LE LR GV Sbjct: 96 RVYPVGRLDYDTEGLLILTNDGEFANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVK 155 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L DG T PA E D S + IT+YEG+NRQVRRM VG+P Sbjct: 156 LEDGMTAPAEVEYHDIDP-------------DKKQSVISITIYEGKNRQVRRMFEAVGYP 202 Query: 191 TLRLIRYAMGDYSLDNLANGEWREV 215 RL R G L L G++R + Sbjct: 203 VTRLKRVKFGSIPLVGLPRGKFRRM 227 >UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q2JQ37_SYNJB Length = 226 Score = 221 bits (563), Expect = 1e-56, Method: Composition-based stats. Identities = 101/178 (56%), Positives = 128/178 (71%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 R + F KPY VL QFTD GR TL+ FIPV VY GRLDRDSEGLL+LT++G L ARL Sbjct: 29 RYLKFYKPYGVLTQFTDREGRPTLQSFIPVPRVYPVGRLDRDSEGLLLLTDDGRLNARLI 88 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P +IY+VQVEGIPT AL+ L+ G+ + T PA +++ E L PR+PPIR Sbjct: 89 DPKFGHERIYWVQVEGIPTPQALQQLQQGLIIQGRKTRPAQVKVLAEEPTLPPRDPPIRF 148 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+SIPT+WL++TL EGRNRQVRRMTA VG PTLRL+R +G SL LA G+W+++++ Sbjct: 149 RRSIPTTWLELTLREGRNRQVRRMTAAVGIPTLRLVRVGLGPLSLAGLAPGQWQDLSE 206 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 111/221 (50%), Gaps = 22/221 (9%) Query: 3 QFIISENTM---QKTSFRNHQVKRFSSQRSTRRKPEN--QPTRVILFNKPYDVLPQFTDE 57 + IIS + + +V + + KP + +L NKP + +DE Sbjct: 22 ELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKKVYLLMNKPRGYVTTLSDE 81 Query: 58 AGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 RKT+ + + Q VY GRLD DSEGLL+LTN+G L LT P + K Y +V+G Sbjct: 82 RDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQALTHPKHKVKKTYLAKVDG 141 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 IP + L+A+ G+ L DGPT PA L + L+I+++EG Sbjct: 142 IPETEELKAMAKGLVLEDGPTAPADVRLAG---------------TGDNRALLEISIHEG 186 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RNRQVRRM H+G+ LRL R +G L +L +GE R +T Sbjct: 187 RNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALT 227 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 219 bits (559), Expect = 4e-56, Method: Composition-based stats. Identities = 64/196 (32%), Positives = 94/196 (47%), Gaps = 19/196 (9%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQ 95 I+ +KP + +D GR+T+ E +P + ++ GRLD D+ GLL+ + +G L Sbjct: 71 PVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELG 130 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE--------- 146 L P K Y VEG PT+ L LR G+ L+DGPT PA +V+ Sbjct: 131 NGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHAERL 190 Query: 147 -------PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 P + E ++ S +++ + EGR RQV+RM A VG P L L R + Sbjct: 191 LEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRDSF 250 Query: 200 GDYSLDNLANGEWREV 215 G L +L G WR + Sbjct: 251 GPLELGDLPRGAWRAL 266 >UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XK09_SYNP2 Length = 223 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 96/184 (52%), Positives = 122/184 (66%), Gaps = 8/184 (4%) Query: 41 VILFNKPYDVLPQFTD--EAG--RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQA 96 +L +KPY+VL QFTD G R+TLK+F+PV +Y+ GRLD DSEGLL+LTN+ L+ Sbjct: 5 YVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAPLKH 64 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 L +P + Y+VQVE IP ALE LR GV + T PA A L+ + R PP Sbjct: 65 YLCEPKFAHSRTYWVQVENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAREPP 124 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG----DYSLDNLANGEW 212 IR RK++PT+WL++TL EGRNRQVRRMTA VG PTLRL+R A+G +L L GEW Sbjct: 125 IRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTLRLMRVAIGAGPAKLTLTGLGPGEW 184 Query: 213 REVT 216 R +T Sbjct: 185 RHLT 188 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 219 bits (558), Expect = 7e-56, Method: Composition-based stats. Identities = 60/187 (32%), Positives = 89/187 (47%), Gaps = 6/187 (3%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGA 93 + ++ NKP L D GR T+ + +P G++ GRLD D+ GLL T +G Sbjct: 67 EKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQ 126 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 + L P K K Y V G PT++ L LR G+ L DGP PA E++ + + Sbjct: 127 MAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISDDVKMKNL 186 Query: 154 NPPIRERKSI---PTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 P K+ P + + +T+ EGR QV++M + L L R G L + G Sbjct: 187 LAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLTRVKEG 246 Query: 211 EWREVTD 217 EWR +T+ Sbjct: 247 EWRLLTE 253 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 71/185 (38%), Positives = 99/185 (53%), Gaps = 14/185 (7%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNN 91 E + V++ NKP L +D GR+T+ + +P + VY GRLD D+ GLL+ TN+ Sbjct: 56 IELEQPVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTND 115 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L RL P + K+Y V V GI ++ AL GV L DG T PA E++ + Sbjct: 116 GELTQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQAD--- 172 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 + + + + ++EGRNRQVRRM +G P LRL R A G SL +L GE Sbjct: 173 ---------REDGVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGHLKTGE 223 Query: 212 WREVT 216 WR +T Sbjct: 224 WRALT 228 >UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumophila RepID=Q5ZXB8_LEGPH Length = 222 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 101/178 (56%), Positives = 128/178 (71%), Gaps = 1/178 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ILFNKPY +L QFT E +TL FI + G YAAGRLD+ SEGLL+LT++G LQ RL Sbjct: 24 PQLILFNKPYGILTQFTGELPEQTLSAFIKLPGFYAAGRLDKQSEGLLILTDDGKLQHRL 83 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K Y+VQVEG+PT L+ LR G+ + D LPA A L+ EP +WPR PPIR Sbjct: 84 THPKFEKKKHYWVQVEGVPTDKDLQPLRKGLVIKDITFLPAEARLISEP-KIWPRIPPIR 142 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ERK IPT+WL+I L EG+N Q+R+MTA +GFPTLRLIRY +GD+ LD L GE++ + Sbjct: 143 ERKHIPTTWLEIILREGKNHQIRKMTAAIGFPTLRLIRYQIGDWHLDQLQPGEYKLIN 200 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 66/207 (31%), Positives = 97/207 (46%), Gaps = 18/207 (8%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTR--VILFNKPYDVLPQFTDEAGRKTLKEFIPVQ- 70 + +V + +P P + I+ +KP V+ D GR T+ + + V Sbjct: 37 VTVPGTRVDLEHDEVLVDGQPLRMPAKRTYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPA 96 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 V+ GRLD DSEGL++LT++G L LT P K Y V ++ T DAL + RNGV Sbjct: 97 RVFPVGRLDLDSEGLILLTDDGELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVL 156 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L T PA EL++ + W++I L EGR RQ+R + +G+ Sbjct: 157 LEGEMTAPAWVELLE---------------TTPEGVWVRIVLREGRKRQIRAVAKLLGYE 201 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVTD 217 RL+R G L +L WR +TD Sbjct: 202 VRRLVRVREGPLQLGDLPPRAWRHLTD 228 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 90/181 (49%), Gaps = 18/181 (9%) Query: 38 PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGAL 94 P + NKP ++ D GR+ + + +P + G++ GRLD+D+ GLL+ + +G L Sbjct: 109 PAVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNL 168 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 L P K+Y +EG Q ALE L +G+ L+DG T PA +V Sbjct: 169 GNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVV---------- 218 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 + S +++ L+EGR QV+RM VG P ++L R + G L LA G +R Sbjct: 219 -----QAGKKHSVIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYRR 273 Query: 215 V 215 + Sbjct: 274 L 274 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 80/198 (40%), Positives = 105/198 (53%), Gaps = 17/198 (8%) Query: 22 KRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRKTLKEFI-PVQGVYAAGRLD 79 R + QP R IL NKP VL DE GRKT+ + + VY GRLD Sbjct: 46 SPEDEIRVDGKLVRQQPKMRYILLNKPAGVLSTAKDERGRKTVIDLLGQSNRVYPVGRLD 105 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 +DSEGL++LTN+G L R+T P K Y V+VEG + +L+ L GV L DG + P Sbjct: 106 KDSEGLMLLTNDGELAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPL 165 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 A+++ +S S L IT+ EGR RQVRR A +G+ RL R A+ Sbjct: 166 DAKIIS---------------RSRDKSKLLITMGEGRKRQVRRTLAALGYKVKRLTRVAL 210 Query: 200 GDYSLDNLANGEWREVTD 217 G SL NL GE+RE++D Sbjct: 211 GPLSLGNLKPGEYRELSD 228 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 74/211 (35%), Positives = 105/211 (49%), Gaps = 17/211 (8%) Query: 10 TMQKTSFRNHQVKRFSSQRST--RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI 67 T+ + R VK SS R + E++ L KP V+ D+ GRK + +F Sbjct: 29 TVNGKTVRELGVKVSSSDRIEVNGVQLESEEPVYFLLYKPRGVISAVKDDKGRKVVTDFF 88 Query: 68 PV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL 125 + +Y GRLD D+ GLL+LTN+G +L P K Y +++GIP ++ L+ L Sbjct: 89 TEVEERIYPIGRLDYDTSGLLLLTNDGDFANKLMHPKYEINKTYVAKLKGIPLKENLKKL 148 Query: 126 RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTA 185 GV L DG T PA +L+ K TS ++IT++EGRNRQVRRM Sbjct: 149 ERGVRLEDGKTAPAKVKLLSLD-------------KKKQTSIVQITIHEGRNRQVRRMFE 195 Query: 186 HVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +G L+L R +L L GE RE+T Sbjct: 196 AIGHEVLKLKREEYAFLNLAGLKTGEKRELT 226 >UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=A3YG85_9GAMM Length = 242 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 98/174 (56%), Positives = 123/174 (70%), Gaps = 1/174 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +I+FNKP+ VL QFT + + TL FI Y AGRLD DSEGLL+LT++GALQ + Sbjct: 2 PSIIVFNKPFQVLSQFTTDEEKATLSSFIDKANFYPAGRLDYDSEGLLLLTDHGALQHLI 61 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + K Y VQVEG T++A+E LR GV L DG T PA A++ + WPR+PPIR Sbjct: 62 ASPQHKMPKTYLVQVEGELTKEAVEQLRVGVELKDGLTKPAEAKIASD-FEPWPRHPPIR 120 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 ERK+IPTSWL++T+ EG+NRQVRRMTA VGFPTLRLIR +G YSL ++ G W Sbjct: 121 ERKNIPTSWLELTITEGKNRQVRRMTAAVGFPTLRLIRTQIGPYSLTDIELGHW 174 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 213 bits (542), Expect = 4e-54, Method: Composition-based stats. Identities = 67/183 (36%), Positives = 94/183 (51%), Gaps = 11/183 (6%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGAL 94 + +L NKP L D+ GR+T+ + +P + VY GRLD ++EGLL++TN+GAL Sbjct: 63 EQHVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLITNDGAL 122 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 L P K Y+ V G T++ L+ LR+G+ L DG T PA L+ E Sbjct: 123 MNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPEREPGERVR 182 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 R IT++EGRNRQVRRM A VG L R +L +A G+ R Sbjct: 183 GLTRAA---------ITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRA 233 Query: 215 VTD 217 +T+ Sbjct: 234 LTE 236 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 15/199 (7%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGR 77 +V K E + L KP V+ D+ GRK + +F Q +Y GR Sbjct: 41 KVTGSDQIEVNGLKVEREEPVYFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGR 100 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD D+ GLL+LTN+G +L P K Y +V+GIP ++ L L G+ L +G T Sbjct: 101 LDYDTSGLLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTA 160 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 PA A+L+ K TS +++T++EGRNRQVRRM +G ++L R Sbjct: 161 PAKAKLLSLD-------------KKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKRE 207 Query: 198 AMGDYSLDNLANGEWREVT 216 +L L G+ RE+T Sbjct: 208 EYAFLNLRGLHTGDARELT 226 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 211 bits (537), Expect = 1e-53, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 23/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + + ++V+ + ++ + IL NKP D + D RKT Sbjct: 348 QISVNGKIVTEM---GYKVRPTDVVKYGKKALNPEKMVYILINKPKDYITTTDDPEERKT 404 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + I + VY GRLDR++ GLL+LTN+G L +LT P KIY +++ T Sbjct: 405 VLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAEKLTHPSSGIKKIYQAELDKPITT 464 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + E L+ GV L DG P LV A + + + ++ GRNR Sbjct: 465 EDFEQLKAGVELEDGFIRPDEVGLVTPDAQV-----------------VGLEIHSGRNRI 507 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRRM H+G+ +L R + +L G+WR +T+ Sbjct: 508 VRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTE 545 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 70/179 (39%), Positives = 88/179 (49%), Gaps = 16/179 (8%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 L +KP + TD GRKT+ E +P + VY GRLD D+ GLL+LTN+G L RL Sbjct: 78 YYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHRL 137 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P K Y V+V + AL+ L GV L DG T PA V Sbjct: 138 MHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGRGSLP----- 192 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +IT++EGRNRQVRRM VGFP L R G LD +LA G +R ++ Sbjct: 193 --------TYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLS 243 >UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1ZYI5_OPITP Length = 188 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 2/176 (1%) Query: 43 LFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +KPY VL QFT E G + TL EF VY GRLD DSEGLL+L++ L RL Sbjct: 4 ALHKPYGVLSQFTPEPGSRWRTLAEFGLPPAVYPLGRLDADSEGLLLLSDEPGLNTRLLN 63 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P + + Y+VQVE +PT AL L+ GV + D T P A +D L PR+PPIR R Sbjct: 64 PDQAHRREYWVQVERVPTDAALAQLQRGVKIGDYATRPCAARRLDPAPTLPPRDPPIRAR 123 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 K++P WL + L EG+NRQVRRMTA +G PTLRL+R +GD++L LA G+WRE+T Sbjct: 124 KNVPDCWLALELIEGKNRQVRRMTAAIGHPTLRLVRVRIGDFALGKLAVGQWRELT 179 >UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter RepID=A3M7K0_ACIBT Length = 262 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 95/178 (53%), Positives = 122/178 (68%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++ NKPYDVL QF + T+ +F+ + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVILNKPYDVLSQFRKDEAHMTVSDFVDDPTLRIAGRLDMDSEGLVFLTDHGGLNQFIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T++ALE LR GV LNDG TLPA A V EP WLW R+PP+R Sbjct: 62 NPANKKYKTYLVQVDGDVTEEALEQLRKGVELNDGMTLPAKAIKVSEPEWLWDRDPPVRY 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD--NLANGEWREV 215 R SIPTSW++I++ EGRNRQVRRMT+ VGFPTLRLIR +G L L GE +E+ Sbjct: 122 RASIPTSWIEISICEGRNRQVRRMTSAVGFPTLRLIRTKIGTIDLVQLGLQPGETKEI 179 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 19/192 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEG 84 + RK + +P RVI+++KP + +D GR T+ + +P A GRLD ++EG Sbjct: 247 KPVHRKIQTKPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEG 306 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ T +G L RL P + Y V++ G +Q+ L++G+TL+DG + Sbjct: 307 LLLFTTSGELANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAM- 365 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W + L EGRNR+VRRM VG RLIR G + L Sbjct: 366 --------------GGGEGANRWYHVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLL 411 Query: 205 -DNLANGEWREV 215 L G+W E+ Sbjct: 412 PPRLRRGKWEEI 423 >UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=B2T6J8_BURPP Length = 189 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 86/180 (47%), Positives = 116/180 (64%), Gaps = 4/180 (2%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ NKP+ + QF+ R +L +++ V VY AGRLD DSEGLL+LT++GALQAR+ Sbjct: 2 HLLALNKPFGTICQFSPHETRASLADWVKVPDVYPAGRLDSDSEGLLLLTDDGALQARIA 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 +P + K Y+ QVEG L+ L GV L D T P AE V+ LW R PPIR Sbjct: 62 EPRHKLVKRYWAQVEGAVDAATLKKLARGVDLGDYVTRPCRAEYVEPTDALWTRTPPIRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY---SLDNLANGEWREVT 216 R +IPT+W+++++ EG+NRQVRRMTA VGFPTLRL+R +G SL L GE E++ Sbjct: 122 RAAIPTTWIELSITEGKNRQVRRMTAAVGFPTLRLVRVGIGALDIFSLG-LQPGESVELS 180 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 98/225 (43%), Gaps = 29/225 (12%) Query: 2 RQFIISENTMQKTSFRNHQVKRFS-SQRSTRRKPENQP--TRVILFNKPYDVLPQFTDEA 58 R+ + T+ RN K + P Q R + NKP + D Sbjct: 20 REIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDP- 78 Query: 59 GRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 T+ F+ ++AAGRLD D+ GL+++T++G R+T P K Y V +E Sbjct: 79 DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLES 138 Query: 116 IPTQDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 D E GV L++ T PA E++ + +++T+ Sbjct: 139 PVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------------------TQVRLTIS 179 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 EGR QV+RM A VG + L R +G +LD +LA GE+R +T+ Sbjct: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTE 224 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 96/213 (45%), Gaps = 20/213 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 +++ T+ + +F +K + E +L +KP + D GR + + Sbjct: 29 VNDKTITELAF---TLKPGDRVEFAGKIIEQTDKIYLLLHKPAGYISSLADPQGRPRVID 85 Query: 66 FIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 + V+ GRLD D+EGLL+L+N+G +T P K Y V+G+ D + Sbjct: 86 LLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFSNLMTHPRYLIPKKYEAWVQGLVKPDTIR 145 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 L GV L DG T PA L+ S L++ ++EG+ RQ++RM Sbjct: 146 QLEQGVALEDGITAPARVRLLSSK---------------KGQSLLELEIHEGKKRQIKRM 190 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VG +L R A+ +L+ + G++R +T Sbjct: 191 CLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLT 223 >UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales RepID=A2S4Y2_BURM9 Length = 235 Score = 208 bits (531), Expect = 8e-53, Method: Composition-based stats. Identities = 98/211 (46%), Positives = 132/211 (62%), Gaps = 8/211 (3%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI 67 + S ++ F+ +R RR E P R+I NKP+ + QF+ R +L +++ Sbjct: 13 TRRSVLCIKIPPFAIERGPRRAAPLPREPCPMRLIALNKPFGTICQFSAHETRASLGDWV 72 Query: 68 PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRN 127 GVY AGRLD DSEGLL+LT++GALQA++ +P + K Y+ QVEG P AL AL Sbjct: 73 KTPGVYPAGRLDADSEGLLLLTDDGALQAKIAEPRHKLVKRYWAQVEGAPDAAALAALER 132 Query: 128 GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 GV L D + P A + P LWPRNPPIR R +IPT+W+++ + EG+NRQVRRMTA V Sbjct: 133 GVDLGDYVSRPCRARFITPPGALWPRNPPIRHRAAIPTAWIELEIAEGKNRQVRRMTAAV 192 Query: 188 GFPTLRLIRYAMGDY---SLDNLANGEWREV 215 GFPTLRL+R +G +L LA GE RE+ Sbjct: 193 GFPTLRLVRVGIGALDVFALG-LAPGETREL 222 >UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria RepID=A0Z1Z6_9GAMM Length = 208 Score = 208 bits (531), Expect = 8e-53, Method: Composition-based stats. Identities = 88/175 (50%), Positives = 115/175 (65%), Gaps = 4/175 (2%) Query: 41 VILFNKPYDVLPQFTD---EAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 +IL NKP+ VL QF+D + R TL + AGRLD DSEGL +LT++G LQ + Sbjct: 26 IILLNKPFRVLSQFSDRDNDPPRLTLANLLSAPEFRVAGRLDYDSEGLTLLTDDGKLQQQ 85 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPI 157 + P + K Y+VQVEG P Q A+E L +GV LNDG T PA +D P LW R+P + Sbjct: 86 IANPKFKVWKTYWVQVEGAPKQQAIEQLTSGVVLNDGLTKPAKVRAID-PPDLWERSPSV 144 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 R R IP +WL+I++ EGRNRQ+RRMTA V PTLRL+R A+GD+ + NL GE+ Sbjct: 145 RFRAHIPDAWLEISIQEGRNRQIRRMTAAVNLPTLRLVRIAIGDWEIGNLQPGEY 199 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 208 bits (531), Expect = 8e-53, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 105/222 (47%), Gaps = 26/222 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGR 60 +Q ++ + K +V + Q S + +P LF KP + D Sbjct: 49 KQITVNGEIVTKPET---KVAPENDQISYKGEPVTYCEYEYYLFYKPAGCVTATED-QLH 104 Query: 61 KTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 KT+ +++ ++ GRLD D+EGLL++TN+GAL L P K K YY ++G+ Sbjct: 105 KTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAHDLLSPAKHVEKTYYAVIDGVV 164 Query: 118 TQDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T+ + + NGV + + T P ++ KS P S +++T+ EGR Sbjct: 165 TEKDVNSFENGVDIGEEKLTKPGKLRIL----------------KSEPESEIELTITEGR 208 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 QV+RM VG L L R +MG L D+L GE+R +T+ Sbjct: 209 FHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTE 250 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 68/208 (32%), Positives = 101/208 (48%), Gaps = 18/208 (8%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--V 69 K + ++ + Q + +P + NKP L D AGR + +P Sbjct: 34 KVTELGLKIDPSAHQIAVDDQPVRAEKLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVE 93 Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 Q VY GRLD S+GLL++TN+G L LT P K+Y+V V G PT D L+ L +GV Sbjct: 94 QRVYTVGRLDEGSDGLLLMTNDGDLAQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGV 153 Query: 130 TLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 L+DG A+ + + +W+++ L EG+NR++RRM A G Sbjct: 154 WLSDGKVRAKSAKRI---------------KAQGNGTWVRVVLTEGKNREIRRMLAKFGH 198 Query: 190 PTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RL R A+G LD L G+ R ++D Sbjct: 199 KVMRLKRVAIGPVKLDKLPKGKARRISD 226 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 17/192 (8%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEG 84 + + + +P F KP V+ D GR T+++FI +Y GRLD DSEG Sbjct: 50 KVDGKLLIKPEPKVYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEG 109 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LTN+G L ++ P + K Y V+V+GI + +E LR G+ + +P LV Sbjct: 110 LLLLTNDGELAYKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLV 169 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 +K SW+KITL+EGR RQ+R+M VG P +RLIR A+ L Sbjct: 170 ---------------KKLKANSWIKITLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKL 214 Query: 205 DNLANGEWREVT 216 +L G+ R +T Sbjct: 215 GDLKPGQLRPLT 226 >UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q6FCZ3_ACIAD Length = 264 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 99/178 (55%), Positives = 125/178 (70%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++FNKPYDVL QF +++ T+ FI + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T+DALE LR GV L DG TLPA A V+EP WLW RNPP+R Sbjct: 62 HPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD--NLANGEWREV 215 R SIPTSW++I++ EGRNRQVRRMTA VGFPTLRLIR +G +L L GE +E+ Sbjct: 122 RASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEI 179 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 8/186 (4%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQ 95 +L NKP VL +D G + +P G++ GRLD D+ G+L+ T NG + Sbjct: 85 HVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMG 144 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPR 153 RL P K Y +EG T ++ L G+ L DG T P + DEP + Sbjct: 145 NRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTHLDK 204 Query: 154 NPPIRE--RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANG 210 N + + R + +S ++ ++EGRN QV+RM +G P ++L R+ G L+ + G Sbjct: 205 NHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIPLG 264 Query: 211 EWREVT 216 WR T Sbjct: 265 SWRMCT 270 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 99/218 (45%), Gaps = 22/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + + ++ R + + + +L NKP D + D RKT Sbjct: 345 QVTVNGEVINEL---GTKILRTDEVKFQDKLVSLEKKVYVLLNKPKDYVTTSDDPQQRKT 401 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLDR++ G+L+ TN+G L ++LT P K+Y+V ++ T Sbjct: 402 VMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLASKLTHPKFLKKKVYHVFLDKPITA 461 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+ + +G+ L DG E + + + I ++ G+NR Sbjct: 462 NELQKISDGIELEDGEIKADAIEYANPEDQ----------------AQVGIEIHSGKNRI 505 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRR+ +G+ ++L R + N+ G+WR +T+ Sbjct: 506 VRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTE 543 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 206 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 22/217 (10%) Query: 6 ISENTMQKTSFRNHQVKRF--SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 I+ + + + + R Q T P+ I+ +KP ++ +D GR+T+ Sbjct: 98 INGEVVTELGVKVAKRDRVAVDGQLVT---PQRSRDTAIILHKPKSIICTRSDPQGRRTI 154 Query: 64 KEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + I G + GRLD +SEGL++LT++G L L P + ++Y V+ GI Sbjct: 155 FDLIENHGSSRLITVGRLDINSEGLIILTSDGQLAHGLMHPSREVPRVYRVKTHGILLAS 214 Query: 121 ALEALRN-GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 LE +R GV L DGPT P L R R+ SW ITL EGRNR+ Sbjct: 215 QLEQIRTVGVRLEDGPTGPLEIVL-------------DRGREQGNNSWYTITLREGRNRE 261 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ H G RL+R G SL NL G WR VT Sbjct: 262 VRRIFDHFGLQVARLLRVGYGGISLGNLEPGAWRPVT 298 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG-- 71 + ++VK + + + + +L NKP D + D RKT+ E + G Sbjct: 438 VTEMGYKVKEGDTVKYGTKVLNPERFVYVLLNKPKDYITTTEDPEERKTVMELVADAGKF 497 Query: 72 -VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 +Y GRLDR++ GLL++TN+G L +LT P KIY V+++ T + EA++ G+ Sbjct: 498 RMYPVGRLDRNTTGLLLITNDGELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIE 557 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L DGP P +V A++ + I ++ GRNR VRR+ G+ Sbjct: 558 LEDGPIKPDAISIVTPDAYV-----------------VGIEIHSGRNRIVRRIFESFGYE 600 Query: 191 TLRLIRYAMGDYSLDNLANGEWREV 215 +L R + L G+WR + Sbjct: 601 VTKLDRTTYAGLTKKELPRGKWRFL 625 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 206 bits (524), Expect = 6e-52, Method: Composition-based stats. Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 22/214 (10%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ M ++VK R + ++ IL NKP + DE GRKT+ + Sbjct: 182 VNGEVMTTL---GYRVKPTDEVRFDGKLLSSEKKEYILLNKPKGFITTTNDEKGRKTVMD 238 Query: 66 FIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 + + GRLDR + GLL+LTN+G L +LT P KIY+V ++ Sbjct: 239 LVANATNVRILPVGRLDRATTGLLLLTNDGELTKKLTHPTHGVRKIYHVILDRKLDYKDF 298 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 +++G+ L DG V++ P + + I ++ GRNR VRR Sbjct: 299 MKVQDGLELEDGLIEVDEISYVNDK----------------PKNEIGIKIHSGRNRIVRR 342 Query: 183 MTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + H+G+ +L R + +L G WR +T Sbjct: 343 IFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLT 376 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 205 bits (523), Expect = 6e-52, Method: Composition-based stats. Identities = 69/198 (34%), Positives = 97/198 (48%), Gaps = 21/198 (10%) Query: 19 HQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAGR 77 HQ QR K + NKP VL D AGR + + +P ++ GR Sbjct: 61 HQEILVDGQRLKFGK-----RVYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDVRLFTIGR 115 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LDR SEGL+V+TN+G L RL P K Y V+V G P DA+ +R GV L +G Sbjct: 116 LDRASEGLIVVTNDGELANRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQ 175 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 P + +RK+ ++ L++ L EG+NR++RR+ A +G LRL R Sbjct: 176 PVSV---------------VMKRKNKQSTTLEVILDEGKNREIRRLMAKIGHKVLRLKRI 220 Query: 198 AMGDYSLDNLANGEWREV 215 AMG L + G +RE+ Sbjct: 221 AMGPLRLGEMPEGAFREL 238 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 205 bits (523), Expect = 7e-52, Method: Composition-based stats. Identities = 61/200 (30%), Positives = 99/200 (49%), Gaps = 19/200 (9%) Query: 21 VKRFSSQRSTRRKPENQPTR--VILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAG 76 + Q + +P P+R +L NKP + D GR + I P ++ G Sbjct: 43 IDPERQQVTFDGQPVLPPSRKLTVLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVG 102 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLD D+EG L+LTN+G L + P ++ + Y+ V+G P ++AL+ LR G+ L T Sbjct: 103 RLDLDTEGALLLTNDGELAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRT 162 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 PA + R++ ++ L++ ++EGR RQVR+M A + P L+L R Sbjct: 163 WPARIREL---------------RRNQESTTLEVIIHEGRKRQVRKMFAAINHPVLQLKR 207 Query: 197 YAMGDYSLDNLANGEWREVT 216 A G L +L G +R ++ Sbjct: 208 VAYGGLRLGSLPTGRYRRLS 227 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 205 bits (522), Expect = 9e-52, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 101/213 (47%), Gaps = 19/213 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + + + + K ++ ++ + +KP +V+ D GR T+ + Sbjct: 31 VNGRVVTELGLKADRQK--DRIEVDGKRLVSEAPVYVALHKPRNVVSTLRDPEGRPTVAD 88 Query: 66 FIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 + +Y GRLD + G+L++TN+G L P K Y ++V+G+ + D L Sbjct: 89 HVRGTGARLYPVGRLDFATSGILLMTNDGDFANALLHPRGGVPKTYVLKVQGVMSDDDLT 148 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 R G+ L DG TLPA A L+ R +WL++TL EGRN+Q+RRM Sbjct: 149 PWREGIRLEDGVTLPAEARLL---------------RHEGDKTWLEVTLREGRNQQIRRM 193 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 G+P +RL R S + L GEWR +T Sbjct: 194 GEATGWPVMRLARTTFAGVSSEGLRPGEWRALT 226 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 99/217 (45%), Gaps = 21/217 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRK----PENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ T+ HQV Q + K P N+ T+VI+F+KP + D GR+ Sbjct: 29 VNGETISDL---GHQVDETKDQVTVDGKLLKLPTNKKTKVIMFHKPAGCVCTKDDPQGRR 85 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ +++P GRLD S GLL+ T++G L RLT P + YYV ++ Sbjct: 86 TVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGELLYRLTHPSFEVPRSYYVWTTRPLSE 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 A + L +GV + D A E+ + + ++ L EG+NR+ Sbjct: 146 SAAQRLVDGVDIRDPEDPDAQEEI------------AFATDVYLENGFAELVLIEGKNRE 193 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +RRM +G+ L R + L +L GE+RE+T Sbjct: 194 IRRMMRAIGYEIRDLKRVSYCQIQLGDLPAGEFRELT 230 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 22/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + ++ R ++ E + +L NKP + + D R T Sbjct: 229 EITVNGEVVTEL---GRRITRQDEVIYKDKRVEIESKVYVLLNKPKNCVTTSDDPECRTT 285 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLDR++ G+L++TN+G L ++LT P + KIY+V + + Sbjct: 286 VMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLASKLTHPSFKKKKIYHVWLNKDVSI 345 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + ++ + +GV L+DG V E S + I ++ GRNR Sbjct: 346 EDMQKIADGVELDDGEIHADAISYVKEDDL----------------SQVGIEIHSGRNRI 389 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRR+ H+G+ ++L R + NL G+WR + + Sbjct: 390 VRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNE 427 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 92/204 (45%), Gaps = 15/204 (7%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQG 71 + +VK+ + + +F KP + DE R + ++ + Sbjct: 35 VTELGTKVKQGDLITVEGKPLVGENKVYYVFYKPKGCVCTLDDEFDRPIITDYFTEVKER 94 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 +Y GRLD D+ GL++++N+G + P KIY V ++G+ T L L GV L Sbjct: 95 IYPVGRLDFDTTGLIIMSNDGEFANMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYL 154 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 TLP ++VD+ T+ LKI L EG+NRQV++M VG P Sbjct: 155 EGVKTLPCKIKVVDKDT-------------EHKTTMLKIKLVEGKNRQVKKMFESVGHPV 201 Query: 192 LRLIRYAMGDYSLDNLANGEWREV 215 RL R ++G +L L G +R + Sbjct: 202 KRLHRVSIGGINLKGLTPGRYRIL 225 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 67/215 (31%), Positives = 102/215 (47%), Gaps = 19/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + + E + I+ NKP D + D GRKT Sbjct: 26 RVTVNGQVITRLGTKINPDTDTVKVDGEPITQE-ESNVYIMLNKPKDYITSKDDPQGRKT 84 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + I + VY GRLD DS GL++LTN+G L RL P K Y V+V+ +P QD Sbjct: 85 VMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELANRLMHPKYNIPKTYMVKVDKLPLQDK 144 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L+ L NG+ L +G E++D + LKI L EGR RQ+R Sbjct: 145 LDNLVNGIYLEEGLCKADHVEILD-----------------TKNNILKIILSEGRKRQIR 187 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM A +G L R ++G +L +L+ G +R++T Sbjct: 188 RMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLT 222 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 94/215 (43%), Gaps = 22/215 (10%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + + V R + + +L NKP + + +D R T + Sbjct: 252 VNGEIVTQL---GKHVTREDFISVDGKPVSIEKKIYVLLNKPRNCVTTSSDPEKRLTAID 308 Query: 66 FIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 + + +Y GRLDR++ GLL+LTN+G L A+L P KIY V ++ + + + Sbjct: 309 LVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAAKLMHPKYEKKKIYQVTLDKPVSVEHM 368 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 + + +G+ L DG VDE + + I ++ GRNR VRR Sbjct: 369 QQIASGIELEDGEIHADAISYVDENNL----------------AIVGIEIHSGRNRIVRR 412 Query: 183 MTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + H+G+ +L R + +L G WR +T+ Sbjct: 413 IFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTE 447 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 25/222 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q +++ + E + ++ NKP DVL D + K Sbjct: 31 KQVMVNGELAMDPGLHIFPQR--DHIEVQGEVIEYREYIYLMLNKPQDVLSATEDASD-K 87 Query: 62 TLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + + + GRLD+D+EGLL+LTNNG L +L P K K YY V+G+ Sbjct: 88 VVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLAHQLLSPKKHVPKTYYALVQGLV 147 Query: 118 TQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T++ + A GV L+DG TLP +++ +S P S +++T+YEG+ Sbjct: 148 TEEDVAAFARGVELDDGYRTLPGQLKII----------------RSAPQSEIELTIYEGK 191 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM VG + L R +MG LD NL GE+RE+TD Sbjct: 192 YHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTD 233 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 204 bits (520), Expect = 1e-51, Method: Composition-based stats. Identities = 55/208 (26%), Positives = 95/208 (45%), Gaps = 20/208 (9%) Query: 14 TSFRNHQVKRFSSQ-RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI---PV 69 S H++ Q R + + +L NKP D + D R+T+ + + Sbjct: 270 VSELGHKIDPVKDQVRYNGELLKREKKIYVLLNKPKDYITTTDDPQERRTVMQLVEKASR 329 Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 + +Y GRLDR++ GLL++TN+G L +L+ P KIY+V++ +Q L ++ G+ Sbjct: 330 ERIYPVGRLDRNTTGLLLMTNDGDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGL 389 Query: 130 TLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 L DG P V + I ++ G+NR VRR+ H+G+ Sbjct: 390 ELEDGIIKPDSVSYVT----------------GGSKREVGIQIHSGKNRIVRRIFEHLGY 433 Query: 190 PTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++L R G+ + +L G WR + + Sbjct: 434 DVVKLDRVVYGNLTKKDLPRGRWRYLEE 461 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 88/194 (45%), Gaps = 19/194 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEG 84 + R + + P RVI ++KP + D R T+ +P + GRLD ++EG Sbjct: 147 KPIRVRIDPPPPRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEG 206 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LT++G L +L P + Y V+V G + + + L GVTL+DG + E Sbjct: 207 LLLLTSSGELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIE-- 264 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W ++T+ EGRNR+VRRM VG RLIR G L Sbjct: 265 -------------AGGGEGANCWYRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLL 311 Query: 205 -DNLANGEWREVTD 217 L G + E+ + Sbjct: 312 PRGLKRGAFVELDE 325 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 64/183 (34%), Positives = 96/183 (52%), Gaps = 17/183 (9%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGA 93 N+ IL +KP L D+ GR+T+ + +P +Y GRLD D+EGLL++TN+GA Sbjct: 60 NERRFYILLHKPRGCLSTAYDDRGRRTVLDLLPHFPARLYPVGRLDADTEGLLIITNDGA 119 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 + L P K+Y +V G T+D L ALRNG+ L+DG T PA ++ Sbjct: 120 MTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVL--------- 170 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 + + ++ ++EGR RQVRRM A +G RL R +LD ++ G +R Sbjct: 171 ------HREGERTVVETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFR 224 Query: 214 EVT 216 +T Sbjct: 225 HLT 227 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 66/227 (29%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 1 MRQFIISENT-MQKTSFRNHQVKRFSSQRSTRRKPENQ-----PTRVILFNKPYDVLPQF 54 M Q I+ + Q +F Q KP P RVI ++KP + Sbjct: 188 MEQLILEGRISVNNEPAHIGQRIQFGDQVKVNGKPIRYRIDPPPARVIAYHKPVGEVVSH 247 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D R T+ +P + GRLD ++EGLL+LT++G L +L P + Y V Sbjct: 248 DDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSGELANQLMHPRFGLEREYAV 307 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 +V G + + + L +GV L+DG E W ++T Sbjct: 308 RVLGALSNEEKQKLLDGVRLDDGIASFGTIE---------------DGGGEGANCWYRVT 352 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 + EGRNR+VRRM VG RLIR G L L G W E+ + Sbjct: 353 IAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDE 399 >UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepID=B9E1X9_CLOK1 Length = 245 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 60/179 (33%), Positives = 95/179 (53%), Gaps = 16/179 (8%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARL 98 IL NKP + D+ GRKTL + + V + VY GRLD ++ G ++LTN+G + + Sbjct: 70 VYILLNKPRGYISSVKDDRGRKTLLDIVKVNERVYPIGRLDYNTSGAIILTNDGEVYNNI 129 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 PG KIY ++GIP+ + ++ NG+ + T A + + Sbjct: 130 AHPGSNKSKIYIAAIKGIPSSEEIKRFENGIDIGGYITAKAKFDFIS------------- 176 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + +S +KI ++EG+NRQVR+M +G P + L+R A+GD L NL G WR +T+ Sbjct: 177 --SNKESSKVKIEIHEGKNRQVRKMCDAIGHPVITLMRIAIGDIKLGNLKEGAWRYLTE 233 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 16/192 (8%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 + NKP V+ D+ R T+ + I + ++ AGRLD+D+EGLL++TN+G L R Sbjct: 64 YFMLNKPAGVVSATEDKKER-TVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAHR 122 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND-GPTLPAGAELVD----------E 146 L P K KIYY +++GI T++ + GV + D PT+PA E++ + Sbjct: 123 LLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKPTMPAALEILSVQKERRKEKIK 182 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD- 205 + P + K S + +T+ EGR QV+RM VG + L R G +LD Sbjct: 183 EQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTLDP 242 Query: 206 NLANGEWREVTD 217 +L G++R++T+ Sbjct: 243 SLKPGQYRKLTE 254 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 24/221 (10%) Query: 3 QFIISENTMQK---TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 Q II + ++VK S + + + + +L NKP D + DE Sbjct: 348 QLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLNPEKSVYVLLNKPKDFITTMEDEND 407 Query: 60 RKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 RKT+ + + + +Y GRLDR++ GLL+ TN+G L +LT P + KIY V+++ Sbjct: 408 RKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQKLTHPSNKVKKIYEVELDKP 467 Query: 117 PTQDALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T + + + +G + L DGP A ++ S + I ++EG Sbjct: 468 ITAEDFDKIVDGKIHLFDGPVKVDEAAII-----------------SPSKKIIGIEIHEG 510 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RNR VRR+ +G+ L+L R + N+ G WR +T Sbjct: 511 RNRIVRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLT 551 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 203 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 70/199 (35%), Positives = 101/199 (50%), Gaps = 17/199 (8%) Query: 20 QVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGR 77 +V + KP ++P R I+ +KP + DE GRKT+ + + V + V GR Sbjct: 47 KVDPERQEICVDGKPLHSEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPERVVPVGR 106 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LDRDS GLL+LTN+G L R+T P K Y V V+G P + EALR GV ++ P Sbjct: 107 LDRDSSGLLLLTNDGDLIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVR 166 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 E + R + ++ ++EGRNR +RR+ VG+P LRL R Sbjct: 167 IRRLEAI---------------RVEPQGTVYRVVIHEGRNRIIRRVFERVGYPVLRLQRV 211 Query: 198 AMGDYSLDNLANGEWREVT 216 +G L +L G WR++T Sbjct: 212 RVGPLRLGDLPPGRWRDLT 230 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 203 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 28/223 (12%) Query: 7 SENTMQKTSFRNHQV---------KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDE 57 ++ +QK + + + V R + + + I+ NKP + + D Sbjct: 277 ADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQIESKVYIVLNKPKNCVTTSDDP 336 Query: 58 AGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 R T+ + + + +Y GRLDR++ G+L+LTN+G L ++LT P + KIY+V ++ Sbjct: 337 QERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTNDGDLASKLTHPSFKKKKIYHVWLD 396 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 + +E + NG+ L DG E S + I ++ Sbjct: 397 KNVAIEDMEKIANGLELEDGEIHADAISYASED----------------DKSQVGIEIHS 440 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 GRNR VRR+ +G+ +L R + NL G+WR + + Sbjct: 441 GRNRIVRRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNE 483 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 203 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 18/213 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 I+ +++ + VK + N+ L NKP V+ +D+ GRKT+ E Sbjct: 29 INGQVVRELATN---VKSGDRVEVEGQPIYNEEKVYYLLNKPRGVISSVSDDKGRKTVVE 85 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P + +Y GRLD D+ G+L+LTN+G + P K+Y +V+G+ ++ L Sbjct: 86 LLPQVKERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLR 145 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 L G+ + T PA E++ + + S +++T++EGRN QV++M Sbjct: 146 PLTRGIEIEGRKTKPAVYEII-------------KVDPAKNRSVVQLTIHEGRNHQVKKM 192 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VG +L R G L L GE+R+++ Sbjct: 193 FQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLS 225 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 18/192 (9%) Query: 29 STRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGL 85 + ++ NKP ++ D GR T+ + + + + GRLD+ SEGL Sbjct: 119 VDGLVIAAEAKIYLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGL 178 Query: 86 LVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD 145 L+ TN+ L P K Y+VQ++ + + + A+ +G+ +DG L A A Sbjct: 179 LLFTNDTEFAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIR-HDGELLTAAA---- 233 Query: 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD 205 R R+ SW+++ L EGRNRQ+RRM +G LRL+R A+G L Sbjct: 234 ----------TRRLRQGDRNSWIEVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELG 283 Query: 206 NLANGEWREVTD 217 L G R +T+ Sbjct: 284 ELPKGAVRALTE 295 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 96/209 (45%), Gaps = 19/209 (9%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ- 70 + + ++V+ R R + + +L NKP + + DE GR+T+ E I Sbjct: 101 KTITEMGYKVQPTDEVRFDGRLLQRERKEYVLLNKPRNFITTTRDEKGRRTVMELISRAS 160 Query: 71 --GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNG 128 + GRLDR++ GLL+ TN+G L +LT P KIY+V+++ L LR G Sbjct: 161 NARLVPVGRLDRNTTGLLLFTNDGELAKKLTHPKHGVRKIYHVELDKTFKSADLGKLREG 220 Query: 129 VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVG 188 + L DG A +D + + L+ GRNR VRR+ H+G Sbjct: 221 LELEDGRIEVDEASYID----------------GASKKEVGVELHSGRNRIVRRIFEHLG 264 Query: 189 FPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + ++L R + + +L G WR +T+ Sbjct: 265 YQVVKLDRVVLAGLTKKDLPRGHWRHLTE 293 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 18/201 (8%) Query: 20 QVKRFSSQRSTRRKPENQ--PTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAG 76 +V + +P + ++ +KP V+ D GR T+ + + ++ ++ G Sbjct: 43 RVDPEHDEILVDGRPIGKIHHRTYVMLHKPAGVVSTTDDPQGRPTVIDLVNLEQRLFPVG 102 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLD DSEGLL+LT++G L +LT P + K Y V + P+ AL A R GV L+ T Sbjct: 103 RLDYDSEGLLLLTDDGELTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKT 162 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 PA EL++ ++ +W+++ L+EGR RQ+R + +G+ RLIR Sbjct: 163 APAWVELIE---------------RTPDGAWVRVILHEGRKRQIREVARVLGYEVRRLIR 207 Query: 197 YAMGDYSLDNLANGEWREVTD 217 G +L +L +G WR +TD Sbjct: 208 VREGPLTLGDLPSGTWRFLTD 228 >UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5INL2_9CHRO Length = 243 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 102/196 (52%), Positives = 124/196 (63%), Gaps = 12/196 (6%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVL 88 P ++PT +LF+KPY VL QFT E G + L +FI V GVYAAGRLD DSEGLL+L Sbjct: 6 EELPASRPTT-LLFHKPYGVLSQFTPEPGSRWRCLADFIAVPGVYAAGRLDADSEGLLLL 64 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIP--TQDALEALRNGVTLNDGPTLPAGAELVDE 146 T NG LQ RLT P + Y+VQVEG +AL+ LR GV + T PA + + Sbjct: 65 TANGRLQQRLTDPAFGHWRTYWVQVEGEAGQRPEALQQLRQGVVIQGRLTRPALVRCLSD 124 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM------G 200 P L R+PPIR+R +IP SWL++ L EGRNRQVRRMTA VG PTLRLIR A+ Sbjct: 125 P-KLPERDPPIRQRATIPVSWLELQLQEGRNRQVRRMTARVGLPTLRLIRVAIDLMDGEA 183 Query: 201 DYSLDNLANGEWREVT 216 SL L G+WR V+ Sbjct: 184 PLSLSGLKPGDWRRVS 199 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 32/223 (14%) Query: 2 RQFIISENTMQKTSFR--NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 ++ I ++ + + Q RF + R + NKP + D Sbjct: 25 KRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVG----PRYFMLNKPQGYVCSTEDP-D 79 Query: 60 RKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ F+ ++AAGRLD D+ GL+++T++G R+T P K Y V +E Sbjct: 80 HPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRVTSPRHHCEKTYLVTLEHP 139 Query: 117 PTQDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 + D + +GV L + T PA ++++ +++T+ E Sbjct: 140 LSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQ-------------------RVRLTISE 180 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 GR QV+RM A VG + L R +GD +L D+LA GE+R +T Sbjct: 181 GRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLT 223 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 57/192 (29%), Positives = 84/192 (43%), Gaps = 19/192 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEG 84 + RK +P RV+L++KP + +D GR T+ + +P A GRLD ++EG Sbjct: 285 KLIHRKVTTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEG 344 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ T +G + R P + Y V+ G + + L +G+ L+DG Sbjct: 345 LLIFTTSGDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRI--- 401 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W + L EGRNR+VRRM VG RLIR G + L Sbjct: 402 ------------ADGGGEGVNQWYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLL 449 Query: 205 -DNLANGEWREV 215 L G W+E+ Sbjct: 450 PRGLKRGRWQEL 461 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 24/194 (12%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEG 84 R T+R P RV++++KP + D GR T+ E +P+ A GRLD ++ G Sbjct: 172 RFTQRSP-----RVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSG 226 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ TN+G L +L P + Y V++ G T++ +++L +G+ L DG PA L+ Sbjct: 227 LLLFTNDGDLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDG---PAKFNLL 283 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 + E W ++T+ EGRNR+VRRM VG RL+R G L Sbjct: 284 RD------------EGGEGANHWYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVEL 331 Query: 205 D-NLANGEWREVTD 217 L G W E+ + Sbjct: 332 PARLKRGMWMEMPE 345 >UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter RepID=Q6F9V5_ACIAD Length = 239 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 23/216 (10%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 I + + +R H + F+ Q + + I+ NKP +++ Sbjct: 33 IQDEIQKDLKYRIHDLTDFNFQVFDQNYVYRE-KVYIILNKPKGFECSHQ-PHHHQSVFS 90 Query: 66 FIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +P + + A GRLD+D+ GLL+LT++G LT P K K+Y+V T D Sbjct: 91 LLPDLLIQRNIAAVGRLDQDTTGLLLLTDDGQYLHTLTHPKKHVPKVYHVATIDPITVDQ 150 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + L GV L++ + A + + + L +T+++G QV+ Sbjct: 151 MHQLEQGVELHNEKGVFAATNVT-----------------LLNETQLSMTIHQGVYHQVK 193 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RM A VG L R+ +G L NLA GEW +T+ Sbjct: 194 RMIAAVGNKVTALHRHKIGQLELPNLAEGEWMYLTE 229 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 93/184 (50%), Gaps = 3/184 (1%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGAL 94 + T I NKP + +DE GR+T+ + + + ++ GRLD+DSEGL++LTN+G L Sbjct: 58 KKTVYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDL 117 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 +L P ++ K Y V V G+P + ++ L G+T++ + + V + Sbjct: 118 AQKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKP 177 Query: 155 PPIRERKSIPTS-WLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 I E L + + EG+ RQ+R+M +G ++L R L +L GE+R Sbjct: 178 AKIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELGDLRPGEFR 237 Query: 214 EVTD 217 +++ Sbjct: 238 HLSE 241 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 70/182 (38%), Positives = 93/182 (51%), Gaps = 18/182 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGA 93 Q RV L NKP V+ D GR T+ + +P Q G++ GRLD DS G L+LT+ G Sbjct: 61 QEPRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGE 120 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L RLT P K Y V V GIP+ AL R+G+ L+ T PA + Sbjct: 121 LTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCL--------- 171 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R +S L++ L EGRNRQ+RR+ +G P + L R A+ LD+LA G WR Sbjct: 172 ------RSRGASSLLEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWR 225 Query: 214 EV 215 + Sbjct: 226 RL 227 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 57/213 (26%), Positives = 99/213 (46%), Gaps = 18/213 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + + VK N+ L NKP V+ +D+ GR+T+ + Sbjct: 55 LNGQVVTDLAT---TVKSGDLVEIEGSPIYNEEKVYYLLNKPRGVISSVSDDKGRQTVID 111 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P + +Y GRLD D+ GLL+LTN+G ++ P K+Y +V+G+ T+++L Sbjct: 112 LLPQVKERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGVVTKESLR 171 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 L GV ++ T PA ++ R S +++T++EGR+ QV++M Sbjct: 172 PLTRGVVIDGKKTKPARYRII-------------RVEPDKNRSIVELTIHEGRHHQVKKM 218 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VG +L R G + L GE R ++ Sbjct: 219 FEAVGHLVDKLSRTQFGSLDVRGLKPGEARRLS 251 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 110/214 (51%), Gaps = 19/214 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 + + + + + +F R + QP R L NKP L D AGR+ + + Sbjct: 51 VDGDVITELGAKIDPETQFIEVDGERVRL--QPRRYYLLNKPSGFLCTNNDPAGRRRVVD 108 Query: 66 FIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 P Q ++ GRLD +SEGL+++TN+G L RL P R + Y+VQV G P ++ L+ Sbjct: 109 LFPNDGQRLFTVGRLDENSEGLILVTNDGELAQRLAHPRYRVARTYHVQVVGNPPREKLD 168 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 LR GV +G +G + + +K +++L++TL+EG+NR++RRM Sbjct: 169 ELRKGVRFKEGVFRVSGLKYL---------------KKQGKSAFLELTLHEGQNREIRRM 213 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 A +G ++L+R G +L L GE R ++D Sbjct: 214 MARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSD 247 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 20/200 (10%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAG 76 +V+ + + E + ++ NKP + D KT+ E + + +Y G Sbjct: 256 KVQPTDEVKFNDSRVEGEKKVYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVG 315 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLD++S GLL+ TN+G L +LT P + KIY V ++ T+ +E + G+TL DG Sbjct: 316 RLDKNSVGLLLFTNDGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEI 375 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 V E + + I ++ GRNR VRR+ H+G+ +L R Sbjct: 376 YADEIAYVKE-----------------DKTEVGIEIHSGRNRIVRRIFEHLGYAVKKLDR 418 Query: 197 YAMGDYSLDNLANGEWREVT 216 S NL G+WR +T Sbjct: 419 VYYAGLSKKNLKRGQWRFLT 438 >UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=Q3AI58_SYNSC Length = 230 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 93/185 (50%), Positives = 114/185 (61%), Gaps = 10/185 (5%) Query: 42 ILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L NKPY VL QFT E G + L +F+ V VYAAGRLD DSEGLL+LT+NG LQ RLT Sbjct: 19 LLLNKPYGVLSQFTSEEGSRWRCLSDFVDVPQVYAAGRLDADSEGLLILTSNGRLQQRLT 78 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPRNPPI 157 P + Y+ QVEG P + L+ L +GV + TLPA A + + L R P I Sbjct: 79 DPRFGHWRSYWAQVEGTPNTEQLQQLCDGVVVQGRRTLPAKARWLQGQDLPQLPERTPQI 138 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG------DYSLDNLANGE 211 R R +IPT+WL+++L EGRNRQVRRMTA VG PTLRL+R + L L G Sbjct: 139 RFRAAIPTNWLQLSLSEGRNRQVRRMTAAVGLPTLRLVRCCIDLMDNGPPLDLTGLQPGS 198 Query: 212 WREVT 216 WR VT Sbjct: 199 WRTVT 203 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 68/201 (33%), Positives = 98/201 (48%), Gaps = 18/201 (8%) Query: 19 HQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAA 75 H V + + KP T+ IL KP L + D GR T+ + G + Sbjct: 52 HWVDPDHDKVTLEGKPLKAATKSYILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPV 111 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP 135 GRLD D+ GLLVLTN+ R+T P + K Y ++ + + + +E LR GV L+DGP Sbjct: 112 GRLDLDTSGLLVLTNDNDFAERITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGP 171 Query: 136 TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLI 195 T PA + R R ++L++T+ EGRNRQVRRM V +L+ Sbjct: 172 TRPAEVK---------------RLRDGPKHTFLEMTITEGRNRQVRRMLEAVESKVSKLV 216 Query: 196 RYAMGDYSLDNLANGEWREVT 216 R A+G + L G+WR +T Sbjct: 217 RTAIGPVRIGELPIGKWRNLT 237 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 19/200 (9%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRL 78 + + + ++ R L NKP + D +T+ + + + ++ GRL Sbjct: 43 EDTDTIKYNGKQLCYSKYRYFLLNKPAGCVSATKDNV-HQTVIDLLNGENTKDLFPVGRL 101 Query: 79 DRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL-NDGPTL 137 D D+EGLL++TN+G L L P K YY ++G + + G+ + +D PTL Sbjct: 102 DLDTEGLLIITNDGRLAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTL 161 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 PA ++++ +S +S +++T+ EGR QV+RM V L R Sbjct: 162 PASLKIIEAD-------------RSTGSSRIELTITEGRFHQVKRMFQAVNMSVTFLKRI 208 Query: 198 AMGDYSL-DNLANGEWREVT 216 +MG+ + D+L G +RE+T Sbjct: 209 SMGNLHIADDLPTGSYRELT 228 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 17/183 (9%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGA 93 ++ IL NKP L D+ GRKT+ + +P +Y GRLD D+EG+L++TN+GA Sbjct: 60 DEKRFYILLNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGA 119 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 + L P K+Y+ +V G T+ L LR G+ L DG T A ++ Sbjct: 120 ITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRIL--------- 170 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 R + ++ ++EGRNRQVRRM A +G L R +L L+ G +R Sbjct: 171 ------RADKGYTVVETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRGLSCGSFR 224 Query: 214 EVT 216 +T Sbjct: 225 HLT 227 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 25/225 (11%) Query: 1 MRQFIISE--NTMQKTSFRNHQVKRFSSQRST----RRKPENQPTRVILFNKPYDVLPQF 54 M + I++ + + + +V R +RK +++P RV++++KP + Sbjct: 86 MEELIVAGRVSVNAEPAHLGQRVLPTDQVRVNGKLIQRKNKSKPPRVLIYHKPAGEIVSM 145 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D GR T+ + +P A GRLD ++EGLL+ T++G L RL P + Y V Sbjct: 146 DDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTSSGELANRLMHPRYEVQREYAV 205 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 ++ G +++ + L G+ L DG PA VD W K+ Sbjct: 206 RILGELSEEQRQQLLTGIQLEDG---PAKFLYVDAAGG------------EGANRWYKVG 250 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 L EGRNR+VRRM RLIR GD + L G E+ Sbjct: 251 LKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEM 295 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 97/215 (45%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ N +Q S + K + +P + ++ NKP + DE GRKT Sbjct: 65 RIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQPAKEKF-YLILNKPRGYVVSQNDELGRKT 123 Query: 63 LKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + +P +G + AGRLD++SEGLL TN+ AL LT P + K+Y V + Sbjct: 124 VYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALINLLTHPKNKVEKVYRVDINRPLNNM 183 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L LR GV + G TLPAG + K+ LKI + EGR RQ+ Sbjct: 184 ELNMLRKGVEIEGGKTLPAGI---------------FVKSKNANGMTLKIVITEGRKRQI 228 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R+M VG L R G L +L G WR + Sbjct: 229 RQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWRLL 263 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + +++ R ++ R +PE + R I+ NKP + +DE GR+T Sbjct: 27 RVTVDGQVVRELGVRVDPERQEIRVDGKRLRPERR--RYIMLNKPPGYITTVSDERGRRT 84 Query: 63 LKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + + V + V AGRLDR + GLL+LTN+G L R+T P K Y V V+G P + Sbjct: 85 VMDLVQVPERVVPAGRLDRPTAGLLLLTNDGDLLFRITHPRYELEKEYEVLVDGHPPPEV 144 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L+ LR GVT++ +P + R + L+I ++EGRNR VR Sbjct: 145 LDQLRRGVTVDGERVVPDQVRPL---------------RIEEAGTVLRIVIHEGRNRIVR 189 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM VG+P L+L R +G + + G WR++T Sbjct: 190 RMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLT 224 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 72/216 (33%), Positives = 102/216 (47%), Gaps = 25/216 (11%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 IS N T + H + ++ E + I+ NKP DV+ DE R T+ + Sbjct: 27 ISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKEFLYIMLNKPQDVISATDDERHR-TVLD 85 Query: 66 FIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + G++ GRLD+D+EGLLVLTN+G + L P K K YYV+++ +++ Sbjct: 86 LLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMAHELLSPKKHVPKRYYVELKKTLSKEE 145 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L NGV L T PA E + E + I + EG+ QV+ Sbjct: 146 AAILENGVELETFTTKPAKVEFITED-------------------KVYIIISEGKYHQVK 186 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 RM VG L L R MG+ LD NLA GE+RE+T Sbjct: 187 RMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELT 222 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 104/222 (46%), Gaps = 22/222 (9%) Query: 3 QFIISENTMQKTSFR---NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 + ++ + F+ N + F Q Q L NKP V+ D Sbjct: 112 RVTVAGEIQRDGRFQVDKNSRQVAFDGQILD-----YQEYYYYLLNKPQGVVSATKDNV- 165 Query: 60 RKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 KT+ + + + ++ GRLD+++EGLL+LTN+GAL LTQP K K Y+ +++G Sbjct: 166 FKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDG 225 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T + + G+TL +G P L+ + +S S +++ ++EG Sbjct: 226 KVTDEIINKFAEGLTLKNGEKA--------RPGELFVEKTYKGDSQSGWVSEIRVIIHEG 277 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 + QV+RM V L L R MG+ +LD +LA G +R +T Sbjct: 278 KFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLT 319 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 199 bits (508), Expect = 3e-50, Method: Composition-based stats. Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 16/197 (8%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDR 80 K R + + + + NKP +VL D+ GRKT+ + I + ++ GRLD Sbjct: 46 KDEIYIRGKKIEKHTEKKVYYILNKPLEVLSSSKDDRGRKTVVDLINCKERIFPIGRLDY 105 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAG 140 ++ GL++LTN+G L R+ P K YYV+V G ++ +E L+NGV L+DG TLPA Sbjct: 106 NTSGLIILTNDGELFNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPAN 165 Query: 141 AELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 ++ R+ + L + + EGRNRQVRRM + P + L R +G Sbjct: 166 VRIL---------------RREKGKTELLVAIREGRNRQVRRMMDKINHPVITLRREKIG 210 Query: 201 DYSLDNLANGEWREVTD 217 + SL NL GE+RE+T+ Sbjct: 211 NLSLGNLKLGEYRELTN 227 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 85/204 (41%), Gaps = 15/204 (7%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQG 71 + +V + + + + LF KP + +DE R + ++ + Sbjct: 36 VTVLGTKVTKKDTICVNGKLINKEDKVYYLFYKPEKCVCTMSDEHDRTCVADYFADSNER 95 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 VY GRLD D+ G L +TN+G + P K+Y V V+G+ T+ L G+ L Sbjct: 96 VYPVGRLDYDTTGALFMTNDGEFANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYL 155 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 TLP + + T+ L I L EG+NRQ+++M VG P Sbjct: 156 EGVKTLPCEIAITGND-------------EEHGTTMLLIRLVEGKNRQIKKMFEEVGHPV 202 Query: 192 LRLIRYAMGDYSLDNLANGEWREV 215 RL R +G L L G +R + Sbjct: 203 KRLRRIMIGPIDLKGLTPGTYRRL 226 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 19/207 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQ 70 + ++V+ R + + IL NKP + + D+ GRKT+ + I + Sbjct: 105 VTEMGYKVQPDDVVRFDGTGITPEQKKYILLNKPKNYITTMDDDRGRKTVMDLISNATKE 164 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 +Y GRLDR++ GLL+ TN+G L +LT P K+Y+ ++ LE LR V Sbjct: 165 RIYPVGRLDRNTTGLLLFTNDGELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVL 224 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 + VD P S + I ++ GRNR VR++ H+G+ Sbjct: 225 IEGKKVFIDAVSYVD----------------GQPKSEVGIEIHSGRNRIVRKIFEHLGYK 268 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVTD 217 +L R + + NL G WRE+T+ Sbjct: 269 VSKLDRVIFAELTKRNLPRGRWRELTN 295 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 24/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q I+ K + R + Q LFNKP + D T Sbjct: 37 QIAINGTVAAKPETKV--DTDADEVSVNGRIVKYQRYEYYLFNKPSGCVSATCDNV-HDT 93 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + ++I ++ GRLD D+EGLL++TN+GAL L P K K YY +++G T Sbjct: 94 VMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSHELLSPSKHVAKTYYARIDGEVTL 153 Query: 120 DALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 D + + G+ + + PT PA + +KS S +++T+ EG+ Sbjct: 154 DDIIRFKEGIDIGEEKPTKPAELVI----------------KKSGSVSEIELTITEGKFH 197 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 QV+RM +G + L R +MG L D+L G +R +T Sbjct: 198 QVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALT 236 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 66/197 (33%), Positives = 101/197 (51%), Gaps = 13/197 (6%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLD 79 + R+ +P +L KP + D GR+T+ I VY GRLD Sbjct: 49 DLDDIRVDGRKVKTGRPRIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLD 108 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 DSEGL++LTN+G L ARLT P ++Y V+V G+P+Q A+++LR+GV +N T + Sbjct: 109 YDSEGLVILTNDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASS 168 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 + + + KS + L++ + EGRNRQVR+M +G P +RL R + Sbjct: 169 SVKFLRR-----------LKAKSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQI 217 Query: 200 GDYSLDNLANGEWREVT 216 G +L G+ R +T Sbjct: 218 GPLRDSSLKVGKHRLLT 234 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 106/217 (48%), Gaps = 24/217 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ T+ + +++ + + + ILF KP + D +T Sbjct: 26 RVTVNDRTVLDPA---YKLSDKDVVKVDGKVIDLPEKVYILFYKPAGYVTSTRDPHS-ET 81 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + EF+P ++G++ GRLD+D+EGLL++TN+G R+ P + K Y V+VEG T+D Sbjct: 82 IMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFAHRVISPRWKVEKEYVVKVEGEITEDK 141 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 LE LR GV+L DG A + I +KI + EG+ QV+ Sbjct: 142 LEKLRRGVSLRDGFFAKAK------------------HVEKISNDTVKIVITEGKYHQVK 183 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 RM A VG T+ L R +G L + GE+R +++ Sbjct: 184 RMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSE 220 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 19/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ T+ + R + + +P R+ L+ KP ++ +DE GR+T Sbjct: 33 RIAVNGRTIDSPALNVGPKDRIT--VDGQPLAPPEPARLWLYYKPEGLVTSASDEKGRET 90 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P + V + GRLD +SEGLL+LTN+G L+ RL P + Y V+V+G PT Sbjct: 91 VFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDGELKRRLELPSTGWLRKYRVRVKGNPTDA 150 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE LR G+T+ P L +R +WL + L EG+NR++ Sbjct: 151 DLEPLRKGITVEGESFQPMTVSL---------------DRVQGANAWLTVGLREGKNREI 195 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RR + +G RLIR + G + L+ L G EV Sbjct: 196 RRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEV 230 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 62/187 (33%), Positives = 89/187 (47%), Gaps = 18/187 (9%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVL 88 R ++ ++FNKP V+ D GR + +F+ + ++ GRLD +EGLL+L Sbjct: 221 RIQLDENMVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLL 280 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN+G L RLT P K Y VQV G Q L+ GV L DG +LVD Sbjct: 281 TNDGELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVD--- 337 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 + +++ L+ G+NR VRR+ VGFP LRL+R +G L + Sbjct: 338 ------------STPGHVLIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLGDQR 385 Query: 209 NGEWREV 215 G R + Sbjct: 386 QGSIRNL 392 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 61/190 (32%), Positives = 88/190 (46%), Gaps = 20/190 (10%) Query: 32 RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-----GVYAAGRLDRDSEGLL 86 + E L +KP V+ D GR T+ + +P G++ GRLD S G L Sbjct: 57 KATERPRHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGAL 116 Query: 87 VLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE 146 +LTN+G LT P K Y V ++G + L+ R GV L D TLP L Sbjct: 117 LLTNDGNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKT- 175 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN 206 + + + I L EGRNRQ+RR+ +GFP ++L R A+G+ L + Sbjct: 176 --------------ITQDKTCIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGD 221 Query: 207 LANGEWREVT 216 L G+ R +T Sbjct: 222 LQRGQARPLT 231 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 97/214 (45%), Gaps = 20/214 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQF-TDEAGRKTLK 64 ++ ++ + + + + Q R I+ NKP L Q GRKT++ Sbjct: 32 VNGEVVRSLGVKVN--PEVDIVEVDGKPVKPQRKRYIILNKPCCYLTQLGRSPDGRKTIE 89 Query: 65 EFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 E I + V+ GRLD ++EGLL+LTN+G L R+ P + K+Y VEG Q L Sbjct: 90 ELIKDIPERVFPVGRLDYNTEGLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTL 149 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 + ++ G+ L DG P +V R + L+IT +EGR V+R Sbjct: 150 KRMKQGIELEDGFAKPDNIRIV---------------RYEGKNTLLEITFHEGRKHLVKR 194 Query: 183 MTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 G RL R A+G L L+ G+WRE+ Sbjct: 195 FLGAFGHKVKRLKRIAIGPIKLGKLSPGKWRELN 228 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 57/207 (27%), Positives = 88/207 (42%), Gaps = 20/207 (9%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----Q 70 +QV + Q L NKP V+ TD KT+ + + Sbjct: 35 KEAKYQVTPETVVYVDDEPIRYQTNFYWLLNKPAGVISATTDPQ--KTVMDLFAPADYRE 92 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 ++ GRLD+D+ GLL++TN+G L L P K K Y ++ G+ T G+ Sbjct: 93 DLFPVGRLDKDTTGLLLITNDGDLAHDLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLK 152 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L D PA ++ R + S +++ ++EG+ QV+RM VG Sbjct: 153 LRDFDAQPAQLTIL-------------RTDTARQESLIEVEIHEGKFHQVKRMFHAVGKE 199 Query: 191 TLRLIRYAMGDYSLD-NLANGEWREVT 216 L L R MG SL +L G++R +T Sbjct: 200 VLTLERIKMGPLSLPADLKRGQYRALT 226 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 65/202 (32%), Positives = 98/202 (48%), Gaps = 20/202 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAA 75 N V +R +NQ + KP + +DE GRKT+ E + +Y Sbjct: 63 NRDVLHVDDERIY--IQKNQQLYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPV 120 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG- 134 GRLD+DSEGLL++TN+GA +T P K+Y V V+ + + + +GV L+DG Sbjct: 121 GRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGT 180 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 T+P +V + + +++TL EG+NR++RRM VG +RL Sbjct: 181 KTMPCAINVVTDEP---------------GRTVMEMTLKEGKNREIRRMCEAVGLEVVRL 225 Query: 195 IRYAMGDYSLDNLANGEWREVT 216 R A G L L G +RE+T Sbjct: 226 KRNAEGVVKLGMLKPGTYRELT 247 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 20/195 (10%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----VQGVYAAGRLDRD 81 + R +Q R NKP V+ D GR T+ ++ + ++ GRLD D Sbjct: 183 RVDGMRVVTSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTD 242 Query: 82 SEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGA 141 +EGL++LTN+G L RLT P + K Y +V G +D + +R GV L+DG Sbjct: 243 TEGLILLTNDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSF 302 Query: 142 ELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGD 201 ++D P + ++I L+EGR VRR+ VG P L R +G Sbjct: 303 RVIDNIE---------------PKALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGP 347 Query: 202 YSLDNLANGEWREVT 216 L+NL +G R +T Sbjct: 348 VGLNNLKSGTIRALT 362 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 198 bits (505), Expect = 8e-50, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 86/218 (39%), Gaps = 19/218 (8%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 R + + V +R RV+++NKP + D GR Sbjct: 82 RLLVNGKPVTPGQKATVSDVFELDGKRLEVAAAAEVLRRVLIYNKPEGEVTTRKDPEGRP 141 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + +P + GRLD ++ GL++ T +G L RL P + Y V++ G Sbjct: 142 TVFDRLPRLREHRWISIGRLDLNTTGLVMFTTDGELANRLMHPSSEIDREYAVRIFGEVD 201 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 +E LR GVTL DG + + W +TL EGRNR Sbjct: 202 DAMIERLRTGVTLEDGEAK---------------FSDISAAGGTGMNRWFHVTLLEGRNR 246 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREV 215 +VRR+ G RL R G L + L G+W E+ Sbjct: 247 EVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEEL 284 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 17/191 (8%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEG 84 + PE +PTRV ++KP ++ DE GR T+ + +P + V + GRLD SEG Sbjct: 78 VVDGQPVPEPEPTRVWRYHKPDGLVTTARDEKGRPTVFDNLPPELPRVVSVGRLDLTSEG 137 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LTN+GAL L P + Y V+V G P + + L G+ + P Sbjct: 138 LLLLTNDGALARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIE---- 193 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 + +R +WL ++L EGRNR+VRR+ H+G P RLIR A G + L Sbjct: 194 -----------TVVDRSVGANTWLTVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQL 242 Query: 205 DNLANGEWREV 215 L G+ EV Sbjct: 243 GKLEPGQVEEV 253 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 101/212 (47%), Gaps = 19/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + + + R PE + R+ L+ KP ++ +DE GRKT+ + Sbjct: 90 VNGKVIDSPALNVTNLDRI--VVDGNPLPEAEAPRLWLYYKPNGLVTTTSDEKGRKTIFD 147 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P + V GRLD +SEGLL+LTN+G ++ +L P + Y V++ G P + Sbjct: 148 ALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKRQLELPSTGWLRRYRVRINGRPQDHEFD 207 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 LR GV ++ P L +R+ +WL I L EG+NR++RR Sbjct: 208 VLRKGVVIDGERFQPMTISL---------------DRQQGANAWLTIGLREGKNREIRRA 252 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VG+P RL+R + G + L L GE E+ Sbjct: 253 MEEVGYPVNRLLRISYGPFQLGTLKEGEVEEL 284 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 58/183 (31%), Positives = 86/183 (46%), Gaps = 19/183 (10%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQ 95 RV++++KP + D GR T+ E +P+ A GRLD ++ GLL+ TN+G L Sbjct: 152 PRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDLA 211 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 RL P + Y V++ G T++ ++L +G+ L DGP Sbjct: 212 NRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSL-------------- 257 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWRE 214 + W ++TL EGRNR+VRRM VG RL+R G L L G W E Sbjct: 258 -VDAGGEGVNHWYRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWME 316 Query: 215 VTD 217 + + Sbjct: 317 LPE 319 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 63/197 (31%), Positives = 82/197 (41%), Gaps = 19/197 (9%) Query: 23 RFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLD 79 R + R+ Q RV+ + KP L D GR T+ + +P A GRLD Sbjct: 51 RIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLD 110 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 ++ GLL+ T +G L RL P + + Y V+V G L L GV L DGP Sbjct: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFK 170 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 + W +TL EGRNR+VRR+ VG RLIR Sbjct: 171 TIKFSGGEGI---------------NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRY 215 Query: 200 GDYSL-DNLANGEWREV 215 GD L L G W E+ Sbjct: 216 GDIPLPKGLPRGGWTEL 232 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 59/186 (31%), Positives = 91/186 (48%), Gaps = 19/186 (10%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNG 92 Q L NKP +L D +T+ +++ ++ GRLD D+ GLL+LTNNG Sbjct: 58 QRYHYYLLNKPEGILSATED-RHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNG 116 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L +L P K+ K Y + G+ Q + A G+ L D +LPA ++ + Sbjct: 117 QLAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDV---- 172 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGE 211 TS +++ + EG+ QV+RM VG L L R AMG L+ +LA+G+ Sbjct: 173 ---------DQGTSQIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQ 223 Query: 212 WREVTD 217 WR +T+ Sbjct: 224 WRSLTE 229 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 73/204 (35%), Positives = 106/204 (51%), Gaps = 25/204 (12%) Query: 23 RFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAG 76 F S + K +N+P +L NKP DVL D GRKT+ + +P +G++ G Sbjct: 47 DFLSVDGKQIKADNRPRDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVG 106 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLDR+S G L+LTN+G L RLT P K Y V +EG P+ + LE R+G+ L+ T Sbjct: 107 RLDRNSTGALLLTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKT 166 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 LPA E++ E + L +TL EGRNRQ+RR+ +G L+L R Sbjct: 167 LPATLEVISE---------------NKDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHR 211 Query: 197 YAMGDYSLDN----LANGEWREVT 216 +G L L +G++R ++ Sbjct: 212 RTIGPLQLHTRGKVLGSGQFRFLS 235 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 198 bits (503), Expect = 1e-49, Method: Composition-based stats. Identities = 62/194 (31%), Positives = 87/194 (44%), Gaps = 19/194 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEG 84 + +RK ++P RV+L++KP + D GR ++ + +P A GRLD ++EG Sbjct: 267 KPVKRKLASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEG 326 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LT +G L R P + Y V+V G + + L +GV L+DGP Sbjct: 327 LLMLTTSGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIR-- 384 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W + L EGRNR+VRRM G RLIR G SL Sbjct: 385 -------------DGGGEGTNHWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISL 431 Query: 205 -DNLANGEWREVTD 217 L G W E+ D Sbjct: 432 PKGLKRGRWEELED 445 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 89/206 (43%), Gaps = 19/206 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQ 70 S QV + + +L NKP + + TD GR+T+ + + + Sbjct: 239 VSELGSQVLPTDQVMVDDKPVTLEAKVYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTE 298 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 +Y GRLDR++ G+L+LTN+G L RL P R KIY V ++ T + ++ + +G Sbjct: 299 RIYPIGRLDRNTTGILLLTNDGDLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFE 358 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L DG + + I ++ GRNR VRR+ H+G+ Sbjct: 359 LEDGEIHADAISYIT----------------GQTHDKVGIEIHSGRNRIVRRIFEHLGYR 402 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVT 216 + L R + +L G WR +T Sbjct: 403 VVHLDRVYYAGLTKKDLPRGRWRYLT 428 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 16/196 (8%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDR 80 R Q + NKP ++ D GR + + +P + V+ GRLD Sbjct: 67 PDLQKVRVDGNYLRPQKLVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPTERVFPVGRLDI 126 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAG 140 SEGL++LTN+G L +L P K+Y V V G + ++ +R G+ + +G G Sbjct: 127 SSEGLILLTNDGDLAQKLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDG 186 Query: 141 AELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 A+++ + + ++I L EG+NR++RR+ A G +L R A+G Sbjct: 187 AKII---------------KARTKATEMEIRLKEGKNREIRRILARFGHKVQQLRRVAIG 231 Query: 201 DYSLDNLANGEWREVT 216 L ++ G +R++T Sbjct: 232 PLKLGDVPRGAYRKLT 247 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 59/191 (30%), Positives = 86/191 (45%), Gaps = 17/191 (8%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI--PVQGVYAAGRLDRDSEGL 85 +R P + NKP V+ +D GR +L +F+ + ++ GRLD ++EGL Sbjct: 433 VDGKRLPTMPDLVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGL 492 Query: 86 LVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD 145 ++LTN+G L RLT P K Y+ +V G +D L+ G+ L DG LV Sbjct: 493 ILLTNDGELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQ 552 Query: 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD 205 E + +++ L+EGR VRRM VG P + L R G L Sbjct: 553 E---------------HGQQALVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLG 597 Query: 206 NLANGEWREVT 216 L G R +T Sbjct: 598 RLKPGTVRALT 608 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 98/212 (46%), Gaps = 18/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ T+ + R + T P ++ + L KP V+ +D GR T+ Sbjct: 32 VNNKTVTELGSRVEPGTDLVTVDGTLVTPPDE-SSYFLLYKPVGVVTTLSDPQGRPTVAN 90 Query: 66 FIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 ++ + ++ GRLD D+EG L+ T++GAL +LT P + + Y +V+G P L+ Sbjct: 91 YVEETGKRLFPVGRLDYDAEGALLFTDDGALAHKLTHPSFQVPRTYLAKVKGAPDTATLD 150 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 LR GV L DG P + + + +WLKI + EGR ++R+ Sbjct: 151 KLRGGVRLEDGMATPVSVSVFE---------------AAERNTWLKIVVAEGRPHLIKRL 195 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 A VG P +RL R + ++ L GE R + Sbjct: 196 CAAVGHPVVRLFRPSYAGVGVEGLRPGELRPL 227 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 15/195 (7%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-----QGVYAAGRLDRD 81 + + + R + NKP + +D GR T+ EF + +Y GRLD Sbjct: 72 RVDGKLLQGPEKLRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYA 131 Query: 82 SEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGA 141 SEGLL++TN+GAL LT+ K+Y V+V G PT++ LE +R G+ ++ G P Sbjct: 132 SEGLLLMTNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRG--RPGEG 189 Query: 142 ELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGD 201 ++ PA +R + W ++TL EGRNR++R+M G ++ R G Sbjct: 190 RVMTAPA-------GVRMVRDAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGP 242 Query: 202 YSLDNLANGEWREVT 216 L ++ GE RE+ Sbjct: 243 LVL-DVEPGEVRELN 256 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + R + + + + +K V+ +D GR T Sbjct: 34 RVTVNGAVVTEAGLRIDPARDALAVDGAPVNLAPEIPITLALHKKPGVVTTASDPEGRPT 93 Query: 63 LKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + +P + ++ GRLD SEGLL+LT +G L RLT P K Y V V G T Sbjct: 94 VFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGELALRLTHPRWHVPKRYRVTVRGQVT 153 Query: 119 QDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 D L + G+ L +G L P A +V+ PA S L++ L++G N Sbjct: 154 PDMLGTMARGMRLAEGERLAPVAARVVEGPAQ--------------DRSILEMELHQGVN 199 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RQ+RRM +G LRL R + G +L +L G RE+T Sbjct: 200 RQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGACRELT 238 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 61/217 (28%), Positives = 93/217 (42%), Gaps = 19/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + + + R + R + I NKP + D GR+T Sbjct: 29 RVTVNGSVITELGSKA-DLDRDHIKVDGRLLKAPKHQIYIALNKPKGTVTTVHDPEGRET 87 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + + VY GRLD SEGLL+LTN+G L + K Y V+V G T + Sbjct: 88 VMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANSIMSAATHLEKTYVVKVTGTLTAE 147 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 E R GV L+ TLPAG +L+ W ++ L EGRN Q+ Sbjct: 148 QEEKFRTGVPLSGRRTLPAGLKLLSR----------------AENPWYEVKLTEGRNNQI 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R M H G +L R +G L L G +R + + Sbjct: 192 RMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFRYLDE 228 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 58/195 (29%), Positives = 91/195 (46%), Gaps = 17/195 (8%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDS 82 K + R LF+KP VL +D AGR + + P ++ GRLD + Sbjct: 82 QKVAVDGEKLRVEEKRYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGT 141 Query: 83 EGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAE 142 EGLL++TN+G L RLT P +IY V G P+ +A+ L G+ +G + Sbjct: 142 EGLLIVTNDGDLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVN 201 Query: 143 LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 V + + L+IT+ EG+NR++RR+ A VG ++L R G Sbjct: 202 RV---------------KSQGSATVLEITMREGQNREIRRLLARVGHKVMKLKRTHFGPI 246 Query: 203 SLDNLANGEWREVTD 217 L +L G R++++ Sbjct: 247 KLGDLERGAHRKLSE 261 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 60/197 (30%), Positives = 82/197 (41%), Gaps = 19/197 (9%) Query: 23 RFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLD 79 R Q + + RV+++ KP L +D GR T+ + +P A GRLD Sbjct: 124 RIDGQIINLSHTQKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLD 183 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 ++ GLL+ T +G L RL P + + Y V+V G L LR GV L DG Sbjct: 184 INTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFK 243 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 + W +TL EGRNR+VRR+ G RLIR Sbjct: 244 EIKFTGGVGI---------------NQWYDVTLMEGRNREVRRLWESQGIQVSRLIRIRY 288 Query: 200 GDYSL-DNLANGEWREV 215 G+ L L G W E+ Sbjct: 289 GNIKLMKGLPRGGWEEM 305 >UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2ULL1_AKKM8 Length = 188 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 41 VILFNKPYDVLPQFTDEA-GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ FNKPY +L QFT EA +TL EF GVY GRLD DSEGLL+L++ L RL Sbjct: 2 ILAFNKPYGILSQFTKEAPHHRTLAEFGFPPGVYPVGRLDADSEGLLLLSDEKGLADRLL 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALR-NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P R + Y+ QVEG P++ L L G+ + TLP A L+ + PR PP+R Sbjct: 62 NPSGRHPRTYWSQVEGTPSETDLRPLELGGLRIRGHCTLPCRARLMRREPDVPPRIPPVR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R SIPTSWL++TL EG+NRQVRRMTA +GFPTLRL+R +G++SL L G W+E+ Sbjct: 122 YRASIPTSWLELTLVEGKNRQVRRMTAAIGFPTLRLLRARIGNFSLAGLKPGAWKEL 178 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 20/207 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---Q 70 + +V +F +K + +L NKP D + D RKT+ + + Sbjct: 235 VTELGLKVSKFDRVVYQGKKINPEKPVYVLLNKPKDFITTTDDPLERKTVMALVGNACEE 294 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 ++ GRLDR++ GLL+ TN+G L A+L+ P + KIY V ++ T + + + G+T Sbjct: 295 RIFPVGRLDRNTTGLLLFTNDGELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLT 354 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L DG +++ S+ L + ++ G+NR VRR+ AH+G+ Sbjct: 355 LEDGEVEVDDMQVL-----------------SVDRKILGLEIHVGKNRIVRRIFAHLGYE 397 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVTD 217 L R +L G +R +++ Sbjct: 398 VTALDRVMYAGLDKKDLKRGNYRFLSE 424 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 197 bits (501), Expect = 2e-49, Method: Composition-based stats. Identities = 59/196 (30%), Positives = 91/196 (46%), Gaps = 18/196 (9%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRD 81 +S + ++ NKP ++ D GR T+ + + + + GRLD+ Sbjct: 70 ASISIDGLVIAAEAKIYLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKA 129 Query: 82 SEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGA 141 SEGLL+ TN+ L P K Y+VQ++ I + + A+ G+ +DG L A A Sbjct: 130 SEGLLLFTNDTEFAQILLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIR-HDGELLTATA 188 Query: 142 ELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGD 201 R R+ SW+++ L EGRNRQ+RRM +G LRL+R A+G Sbjct: 189 --------------ARRLRQGDRNSWIEVELDEGRNRQIRRMLEALGTECLRLVRVAIGG 234 Query: 202 YSLDNLANGEWREVTD 217 L L G R +T+ Sbjct: 235 LELGELPKGAVRALTE 250 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 99/212 (46%), Gaps = 19/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ T+ + + R P + +R+ +F+KP V+ D GR+T+ + Sbjct: 114 VNGETLTSPARNVTENDRIL--IDGEPMPSRERSRLWIFHKPRGVVTTARDPEGRQTVFD 171 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P + V A GRLD ++EGLL+LTN+G L + P + Y V+ G Q L+ Sbjct: 172 VLPEDLPRVVAVGRLDINTEGLLLLTNDGGLAKVIAHPDTGWLRRYRVRAHGDTDQAQLD 231 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 L GVT++ P A L +R WL + L EG+NR+V+R+ Sbjct: 232 RLAKGVTIDGMEYGPVEATL---------------DRVQGDNVWLTLGLREGKNREVKRI 276 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 H+G RLIR + G + L +L G EV Sbjct: 277 LEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEV 308 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 86/194 (44%), Gaps = 19/194 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEG 84 + +RK RV+ ++KP + D R ++ + +P+ A GRLD ++EG Sbjct: 224 KLIQRKIAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEG 283 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ TN+G L RL P + Y V+ G + + L GV L DG Sbjct: 284 LLLFTNSGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDG---------- 333 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 + + + W ++T+ EGRNR+VRRM VG RLIR G L Sbjct: 334 -----IGQFSKIVDGGGEGVNKWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVL 388 Query: 205 D-NLANGEWREVTD 217 +L G W E+ + Sbjct: 389 SQSLKRGRWDELEE 402 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 55/194 (28%), Positives = 83/194 (42%), Gaps = 19/194 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEG 84 + R + P RVI ++KP + D R T+ +P + GRLD ++EG Sbjct: 248 KPIRYRIAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEG 307 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ +++G L +L P + Y V+V G + + L GV L+DG Sbjct: 308 LLLFSSSGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDG---------- 357 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 + W ++T+ EGRNR+VRR+ VG RLIR G L Sbjct: 358 -----MAQFGTIEEGGGEGSNHWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVL 412 Query: 205 -DNLANGEWREVTD 217 L G W E+ + Sbjct: 413 PRGLKRGAWMELDE 426 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 195 bits (497), Expect = 7e-49, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 83/192 (43%), Gaps = 19/192 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEG 84 + +R+ RV+ ++KP + F D GR T+ + +P A GRLD ++EG Sbjct: 222 KIIKRRLRPAQARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEG 281 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ T +G L RL P + Y V+V G A + L GV L DGP E Sbjct: 282 LLLFTTSGDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLE-- 339 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W ++ + EGRNR+VRRM VG RLIR L Sbjct: 340 -------------EAGGEGANRWWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVL 386 Query: 205 D-NLANGEWREV 215 L G++ E+ Sbjct: 387 PAGLRRGDFVEL 398 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 23/220 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + +F+ + R+ + IL NKP + D GRKT Sbjct: 305 KVTVNGELITEPAFKVTAKDEVAIN--NRKINIQKNLVYILLNKPKGYITTTDDPEGRKT 362 Query: 63 LKEFIP-----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + E I Q VY GRLDR++ GLL+LTN+G L +L P KIY+V + Sbjct: 363 VMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGELAQKLAHPKHNIKKIYHVGLNKPL 422 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T+ E + GVTL DG + ++ + + I ++ G+N Sbjct: 423 TKAHFENILQGVTLEDGVA----------------NVDALGYVEAGDKTQVGIEIHSGKN 466 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R VRR+ H+ + +L R + N+ G+WR +T+ Sbjct: 467 RIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLTE 506 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 19/192 (9%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEG 84 + R +P RVIL++KP + D GR ++ +P + GRLD ++EG Sbjct: 173 KPVARPNTKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEG 232 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+ T +G + R+ P T + Y V+V G ++L G+ L DG + + Sbjct: 233 LLIFTTSGDMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYL 292 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 W ++TL EGRNR+VRRM VG RLIR GD L Sbjct: 293 GGD---------------GSNRWYRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVL 337 Query: 205 -DNLANGEWREV 215 L G W E+ Sbjct: 338 PRTLRRGRWEEL 349 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 60/201 (29%), Positives = 94/201 (46%), Gaps = 19/201 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGR 77 H V ILF+KP + D ++ P++G++ GR Sbjct: 38 GHSVSENDVVVLDGETVNFHRKVYILFHKPSGYVTSTKDPHSETIMEFLPPLKGIFPVGR 97 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD+D+EGLL++T++G R+ P K Y V+VEG T+D +E L+NGVTL DG Sbjct: 98 LDKDAEGLLIITSDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFA 157 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 A + + LKI + EG+ Q++RMT VG T+ L R Sbjct: 158 KAKC------------------VEKLSNDTLKIVITEGKYHQIKRMTVAVGLRTVHLKRT 199 Query: 198 AMGDYSL-DNLANGEWREVTD 217 +G L +++ GE+R +++ Sbjct: 200 RIGRLVLPEDMKPGEYRFLSE 220 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 195 bits (496), Expect = 9e-49, Method: Composition-based stats. Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 24/198 (12%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVY------AAGRL 78 R + P V++ +KP +D + + E +P + ++ GRL Sbjct: 58 DDIRVDGEPLDPPPGLVLMLHKPEGYTCSTSDPG--RIVYELLPERFMHRNPIVAPVGRL 115 Query: 79 DRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLP 138 DRDS GLL+LT++G L R+T P + K Y V + + + +G + + P Sbjct: 116 DRDSTGLLLLTDDGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTP 175 Query: 139 AGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYA 198 PA L P +IT+ EGR QV+RM A VG RL R A Sbjct: 176 LA------PAELVVSGPQTA----------RITITEGRYHQVKRMFAAVGNHVERLHRAA 219 Query: 199 MGDYSLDNLANGEWREVT 216 +G L +LA G+WR ++ Sbjct: 220 IGGLDLGDLAEGQWRPLS 237 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 63/201 (31%), Positives = 90/201 (44%), Gaps = 23/201 (11%) Query: 22 KRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-----GVYAAG 76 R P+ Q IL NKP+D + DE GR+T+ + I + G++ G Sbjct: 53 DDIVEVNGVRVVPQTQ-ALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVG 111 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLDR++ G+L+LTN+G L RL P R KIY + + E LR GV L DGP Sbjct: 112 RLDRNTTGVLLLTNDGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPA 171 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 + + + +YEGRNRQVRRM +G ++L R Sbjct: 172 RAVQVAV-----------------NPADPHEIALMIYEGRNRQVRRMLEAIGHEVVQLKR 214 Query: 197 YAMGDYSLDNLANGEWREVTD 217 + + G+WR +TD Sbjct: 215 THYAGLTTKGVRPGKWRRLTD 235 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 21/220 (9%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++++ + ++ K + + + + NKP L D + Sbjct: 27 KAILVNQEVETSPKVQINEHKDVVT--YLGKPLTYEAFVYYILNKPAGFLSATKD-RAQA 83 Query: 62 TLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + + + V+ GRLD+D+ GLL+LTNNG L L P K K Y +V GI Sbjct: 84 TVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLAHDLLSPKKHVTKEYLAKVAGIM 143 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T + G++L D LPA E++D+ S T + IT+ EG+ Sbjct: 144 TDADKDDFAKGISLKDHQCLPAKLEVLDKDL-------------SQETCVVSITIQEGKF 190 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM A G L L R +MG LD LA G++R +T Sbjct: 191 HQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLT 230 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 26/219 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 R+ ++ + + K +K Q R + +K + D Sbjct: 25 RKIRVNGLFITSPKENIEEEK--DEVYYGEKKLSYQEFRYYILHKKAGYVTALEDSRE-A 81 Query: 62 TLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + +P + + GRLD+D+EGLL+ TN+G L RL P K Y+ +E Sbjct: 82 TVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNHRLLSPKSHVDKTYHASLECDI 141 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T++ALE LR GV + + TLPA AE +++ + +T+ EG+ Sbjct: 142 TEEALEKLREGVMIGEYKTLPAKAEKLED-------------------RKIALTIREGKF 182 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 QV++M VG + L R + G L +L GE +EV+ Sbjct: 183 HQVKKMLEAVGNKVIYLKRISFGKLVLGDLELGEVKEVS 221 >UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIA3_BDEBA Length = 265 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 64/211 (30%), Positives = 97/211 (45%), Gaps = 15/211 (7%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQP---TRVILFNKPYDVLPQFTDEAGRKTLKEFIP 68 ++ +V S + KP +P + NKP VL D R T+ E++ Sbjct: 12 KRVYELGIKVDPQSDRILVDGKPLRKPLTQKIYAILNKPTGVLTTMDDPHDRPTVAEYLT 71 Query: 69 VQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 126 V+ GRLD DSEG+L+LTN+G ++ P K Y V++ G P LE L+ Sbjct: 72 ELPVRVFPVGRLDWDSEGMLLLTNDGDFANKVMHPKAEVTKTYLVKLNGKPEPFQLEKLK 131 Query: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186 GV++ G E + + + KS W KI + EG+NRQ+R+M A Sbjct: 132 KGVSIVGGKVSARHIEKIKKTG----------DNKSEKYEWYKIVITEGKNRQIRQMFAK 181 Query: 187 VGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +GF +RL R A+G + + GE + D Sbjct: 182 IGFDVMRLQRVAIGRLRMGAVKTGELVYLND 212 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 14/206 (6%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---G 71 ++ + P +++++KP + D GR ++ + +P Sbjct: 47 KISGNERLSLDGKPLRIAVEHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGR 106 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 A GRLD ++ GLL+ TN+GAL +L P + Y+V+V G T++ L ALR G+ L Sbjct: 107 WVAIGRLDLNTSGLLLFTNDGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPL 166 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 +DG + E + + +TL EGRNR+VRR+ VG Sbjct: 167 DDGLARFTEI----------CPLKTLHEDDTQFNRYFSVTLKEGRNREVRRLWEAVGCKV 216 Query: 192 LRLIRYAMGDYSL-DNLANGEWREVT 216 RL R G SL +L+ G R +T Sbjct: 217 SRLKRIRYGTISLPPSLSAGRHRLLT 242 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 92/204 (45%), Gaps = 14/204 (6%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI---PVQG 71 S +V + L NKP L D+ R T+ + I +Q Sbjct: 36 SELGTKVSSSDIITLDDKPITKATYSYFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQR 95 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 +Y GRLD ++ GLL++TN+G L +LT P K Y+V++ + L G+ + Sbjct: 96 LYPIGRLDFNTTGLLLITNDGDLTQKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIII 155 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 + + + +++ P++WLK+ + EG+NRQVR+M +G+ Sbjct: 156 DKKYLAVCKEIDILKISYMP-----------KPSTWLKLVITEGKNRQVRKMMQALGYQV 204 Query: 192 LRLIRYAMGDYSLDNLANGEWREV 215 L+L RY +++NL G +R + Sbjct: 205 LKLKRYRYSFLTIENLTIGAYRPL 228 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 99/221 (44%), Gaps = 11/221 (4%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ N K + R + + + +L +KP + +D GR+T+ + Sbjct: 30 VTVNGEVKNELGSKADPETDDIRVDGKPLKAEQLVYVLLHKPKGYVTTVSDPEGRETVMD 89 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 + +Y GRLD SEGLL+LTN+G + A+LT K Y V+V G PT++ ++ Sbjct: 90 LVKGIPARLYPVGRLDYLSEGLLLLTNDGEMAAKLTHASTHVPKKYLVKVSGEPTEEQIQ 149 Query: 124 ALRNGVTL--NDGPTLPAGAE------LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 LRNGV L G E + I + W ++TL EG Sbjct: 150 ELRNGVQLPPEQGHIHADPREGGRFGGEKRRSTAVKTAPCKIELTREGDNPWYEVTLNEG 209 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RNRQ+RRM +G ++ R G L ++ NGE+R + Sbjct: 210 RNRQIRRMFDFIGHHVEKIKRVEYGPLKL-DVENGEFRLLN 249 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 19/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + R + P + TR+ L +KP V+ D GR T Sbjct: 47 RVTLNGKVLTSPAINVTDSDRIT--VDDEPLPARERTRLWLLHKPRGVVTTARDPEGRPT 104 Query: 63 LKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P + V A GRLD ++EGLL+LTN+G L + P + Y V+ G TQ Sbjct: 105 VFDGLPEELPRVVAIGRLDINTEGLLLLTNDGGLAKVIAHPDTGWLRRYRVRAFGDVTQP 164 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ L+ G+T++ P A L +R WL + L EG+NR+V Sbjct: 165 DLDKLKKGLTVDGMEYGPIEATL---------------DRAQGDNVWLTLGLREGKNREV 209 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +R+ H+G RLIR + G + L +L G E+ Sbjct: 210 KRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEI 244 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 61/207 (29%), Positives = 105/207 (50%), Gaps = 19/207 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPE---NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV- 69 T+ + + +K + N+ + NKP +VL +D+ GRKT+ + I Sbjct: 33 TATTGMDINENDNIFIDGKKIKTSINEEKVYFMLNKPLEVLSSSSDDRGRKTVVDLIKTD 92 Query: 70 QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV 129 + ++ GRLD + GL++LTN+G L R+ P K YY+++ G ++ ++ L+ GV Sbjct: 93 KRIFPIGRLDYMTSGLILLTNDGELFNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGV 152 Query: 130 TLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGF 189 L+DG TLPA + + + + I++ EGRNRQ+RRM + Sbjct: 153 LLDDGKTLPAKISGI---------------KYDKNKTSMFISIREGRNRQIRRMIEKFEY 197 Query: 190 PTLRLIRYAMGDYSLDNLANGEWREVT 216 L L R +G+ +L +L G++RE+T Sbjct: 198 KVLMLRREKIGELALGDLPEGKYRELT 224 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 61/204 (29%), Positives = 92/204 (45%), Gaps = 17/204 (8%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QG 71 TS + + PE +P R+ ++KP ++ D GR T+ + +P Sbjct: 43 TSPAVNVDDDSVILVDEKPLPEIEPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPR 102 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 V GRLD DSEGLL+LTN+G L L P + Y V+V G + L+ L+ GV + Sbjct: 103 VVTVGRLDIDSEGLLLLTNDGGLARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRI 162 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 P + ++ + SWL + L EG+NR++RR+ HVG Sbjct: 163 EGVEYGPIEVTI---------------DKATRTNSWLTVALREGKNREIRRVMEHVGLTV 207 Query: 192 LRLIRYAMGDYSLDNLANGEWREV 215 RLIR G + L + G E+ Sbjct: 208 SRLIRTTYGPFQLGEVPPGGVEEI 231 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 56/206 (27%), Positives = 99/206 (48%), Gaps = 20/206 (9%) Query: 15 SFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QG 71 + QV + + +R + + +L NKP D + D RKT+ + I + Sbjct: 193 TEMGFQVSPTDTVKYGKRLLKREKFVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDER 252 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 +Y GRLDR++ GLL+ TN+G + +L+ P K+Y V+++ + L+++ GV L Sbjct: 253 IYPVGRLDRNTTGLLLFTNDGEVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVIL 312 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 DG VDE A L P + + + ++ GRNR VRR+ H+ + Sbjct: 313 EDGYAA------VDEIAILNPER-----------TLVGVEIHIGRNRIVRRIFNHLDYEV 355 Query: 192 LRLIRYAMGDYSLDNLANGEWREVTD 217 ++L R + N+ G+WR +++ Sbjct: 356 VKLDRTMYAGLNKKNIDRGDWRYLSE 381 >UniRef50_Q4FV02 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=Q4FV02_PSYA2 Length = 208 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 97/186 (52%), Positives = 124/186 (66%), Gaps = 14/186 (7%) Query: 41 VILFNKPYDVLPQFTDEAG--RKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +ILFNKPY V QF D++ TL E+ + + AGRLD SEGLL+LT++G + + Sbjct: 6 LILFNKPYGVQSQFRDDSNNDHTTLSEYFTDKSLRIAGRLDATSEGLLILTSDGRINKAI 65 Query: 99 TQP---------GKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDE--- 146 TQP ++ GK Y VQVEG+ T L+ L +GV L DG TLPA A L+DE Sbjct: 66 TQPPSAKNFAQNKQKQGKTYLVQVEGVVTAVQLKELASGVILKDGKTLPASATLLDEADL 125 Query: 147 PAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN 206 P LW R+PPIRERK+IPTSWL +T+YEG+NRQVRRMTAHVG P LRLIR+++ + L Sbjct: 126 PITLWQRDPPIRERKNIPTSWLMLTIYEGKNRQVRRMTAHVGLPCLRLIRWSVAGFELGE 185 Query: 207 LANGEW 212 L GE+ Sbjct: 186 LGVGEF 191 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 193 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 105/216 (48%), Gaps = 20/216 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFT---DEAGRKT 62 ++ +++ R + + R + E++ + NKP V+ DE GR T Sbjct: 59 VNGQVVRELGTRVFPERDRVTVRGEPIQAESK--VYYVLNKPDGVVSSAAGSVDERGRPT 116 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLD S G+L+LTN+G L LT P K Y+V+ +G T++ Sbjct: 117 VISLLHGVSERLYPVGRLDFHSRGVLLLTNDGGLAEALTHPRHGVVKTYHVKFQGKLTEE 176 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 + LR+GV L+DG A P R++ W +I + EG NRQ+ Sbjct: 177 QEQLLRDGVELDDG-------------AITRPVAELFAFRETATNVWYQIGIREGLNRQI 223 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM +G P L+LIR A+GD + D + GE+R + Sbjct: 224 RRMGEAIGHPVLKLIRVAIGDITADGVPEGEFRALN 259 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 25/219 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q I + + + + +K + ++ NKP D + TDE K Sbjct: 25 KQVTIDDKVETSPKKQIN--PELEIVKVNDQKIDFVNKVYLMLNKPKDYISATTDEQ-HK 81 Query: 62 TLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + I ++ GRLD+D+EGLL++TN+G L PGK K Y V + T Sbjct: 82 TVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNHELMSPGKHVAKTYEVISQKNIT 141 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ + A + G+ LN+G PA DE + +T+YEGR Sbjct: 142 KNDINAFKVGIELNEGLAKPAKLVQGDELNKSF------------------VTIYEGRYH 183 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM + L L R +GD LD LA+GE+R +T Sbjct: 184 QVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLT 222 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 193 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 65/203 (32%), Positives = 94/203 (46%), Gaps = 20/203 (9%) Query: 20 QVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYA 74 + + + + P + L NKP + D + T+ E + + V+ Sbjct: 41 HIDEYKDLVTYQGTPLVYESFVYYLLNKPSGYVSATQDRQ-QATVMELLDDTARQKTVFP 99 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 GRLD+D+ GLL+LTNNG L L P K K Y +V GI T+ + G++L D Sbjct: 100 VGRLDKDTRGLLLLTNNGQLAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDH 159 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 LPA E++ TS +KIT+ EG+ QV+RM A G L L Sbjct: 160 QCLPAHLEVLASDL-------------QQQTSLVKITIQEGKFHQVKRMVAACGKEVLDL 206 Query: 195 IRYAMGDYSLD-NLANGEWREVT 216 R +MG LD +LA GE+R +T Sbjct: 207 QRLSMGPLKLDPSLAEGEFRRLT 229 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 63/191 (32%), Positives = 90/191 (47%), Gaps = 22/191 (11%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSEGLL 86 R + VI +KP V +D +T+ + +P V G++ GRLD+DSEGLL Sbjct: 48 LDGERVRLPEKKVVIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLHPVGRLDKDSEGLL 107 Query: 87 VLTNNGALQARLTQPGKRTGKIYYVQVE-GIPTQDALEALRNGVTLNDGPTLPAGAELVD 145 +LTN+G L +LT P K+Y + G ++ L GV L+DG AE Sbjct: 108 LLTNDGDLTLKLTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQ 167 Query: 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD 205 E A +I + EG+ R+VRRM +G+P RL+R +G L Sbjct: 168 EGA--------------------RIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLG 207 Query: 206 NLANGEWREVT 216 L GEWR +T Sbjct: 208 KLNPGEWRYLT 218 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 192 bits (489), Expect = 6e-48, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 19/206 (9%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQ 70 K + + + +K + + + L NKP + K + + I + Sbjct: 32 KLATKGIDISENDEVLVEGKKIKLEEAKKYYLLNKPIGYSSTAKAQFQEKIVLDLIDSKE 91 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 +Y GRLD+DS GLL+LTN+G L RLT P K Y V+V+ + L+ L +G+ Sbjct: 92 RIYPVGRLDKDSFGLLLLTNDGDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIM 151 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L T A E++D ++ +K+ L EGRNRQ+R+M + + Sbjct: 152 LEGKITRKARFEMLD-----------------FKSNIVKVFLKEGRNRQIRKMFKTLDYN 194 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVT 216 + L R A G L L G +RE++ Sbjct: 195 VISLERIAFGKIKLGKLKVGNYRELS 220 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 192 bits (489), Expect = 7e-48, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 98/204 (48%), Gaps = 17/204 (8%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRKTLKEFIPV-QG 71 + +V + +P R + NKP V+ D+AGR + + +P + Sbjct: 67 VTELGTRVDPVKQTIRVDGEALRKPQRLYFVVNKPEGVVTTNYDQAGRTRVIDLVPTDER 126 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 V+A GRLDR SEGL+++TN+G R+T P K Y V+V G + L LR G+ L Sbjct: 127 VFAVGRLDRASEGLIIVTNDGEFANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHL 186 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 +DG ++ +R+ ++ + I L EG+NR++RR+ A +G Sbjct: 187 SDGFCKVDAIQV---------------KRRHKQSTDMVIQLSEGKNREIRRILARIGHKV 231 Query: 192 LRLIRYAMGDYSLDNLANGEWREV 215 L+L R A+G L L G WR + Sbjct: 232 LKLKRLAVGSLKLGELPLGAWRWL 255 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 192 bits (488), Expect = 7e-48, Method: Composition-based stats. Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 25/213 (11%) Query: 10 TMQKTSFR-NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP 68 T Q N+ V R R N+ + NKP + +DE GR + + + Sbjct: 114 TTQGVRVNPNNDVIRVDGVRIH----INEDLEYFVLNKPRGMHSTMSDELGRPCVGDLVS 169 Query: 69 V-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 Q ++ GRLD D+EGLL+LTN+G L RL P K Y V G T + Sbjct: 170 EKTASGQRLFHVGRLDADTEGLLLLTNDGELANRLMHPKYEVSKTYLATVRGEATNKLVS 229 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 ALR+GV L DGP A+++D S L+I ++EGR VRR+ Sbjct: 230 ALRDGVELEDGPAKADFAQIID---------------VFQGKSLLRIEIHEGRKHIVRRL 274 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +GFP RL+R + L + G R + Sbjct: 275 FDELGFPVERLVRTKLHTVQLGDQKPGSLRALN 307 >UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID=B7L2Z9_METC4 Length = 320 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 65/192 (33%), Positives = 93/192 (48%), Gaps = 18/192 (9%) Query: 29 STRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGV---YAAGRLDRDSEGL 85 R+ + +L NKP +L + D GRKT+ + + + GRLD SEGL Sbjct: 74 VDGRRLVSAAKVYLLLNKPRGLLTTYGDPQGRKTVYDCLAGHDLPFLAPVGRLDCASEGL 133 Query: 86 LVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVD 145 L++TN+ RL P K+Y+VQ++ P + L LR GV +DG L A Sbjct: 134 LLMTNDTRWAHRLLDPASNVDKVYHVQIDRRPDEALLTGLREGVA-HDGERLAAK----- 187 Query: 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD 205 R +WL++ L EGRNRQ+RRM A G LRL+R A+G L Sbjct: 188 ---------SVAPLRVGERNAWLEVVLSEGRNRQIRRMMALNGAEVLRLVRVAVGGVRLG 238 Query: 206 NLANGEWREVTD 217 ++ G +R +TD Sbjct: 239 DVRKGAFRHLTD 250 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 192 bits (488), Expect = 8e-48, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 100/216 (46%), Gaps = 28/216 (12%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ- 70 QK + + S +R + +L NKP V+ D GRKT+ + +P + Sbjct: 66 QKVNPERDIITVDGKSVSAQR---HHRLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEEL 122 Query: 71 ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 126 G++ GRLD S G L+LTN+G L +LT P K Y + V+G P + L+ R Sbjct: 123 RKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWR 182 Query: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186 GV L+ T A L++ A S L+I L EGRNRQ+RR+ Sbjct: 183 EGVLLDGRKTRKAKVSLLESLAE---------------KSRLEIVLQEGRNRQIRRVAEQ 227 Query: 187 VGFPTLRLIRYAMGDYSLDN-----LANGEWREVTD 217 +G+P ++L R A+G L L G +R + D Sbjct: 228 LGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 191 bits (487), Expect = 9e-48, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 19/207 (9%) Query: 14 TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--- 70 + +QV++ + + +L NKP + DE RKT+ + + Sbjct: 172 VTEMGYQVQKTDKVIFDGQGITPEKPVYVLLNKPKGYISTTKDEKARKTVMDLVANASPY 231 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 V+ GRLDR + G+++LTN+G + +LT P KIY+V ++ + L A+ GV Sbjct: 232 RVFPVGRLDRSTTGVILLTNDGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVR 291 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 L +G + + P + + I ++ G NR VRR+ +G+ Sbjct: 292 LEEGVAEVDSISYI----------------EGKPKNEVGIEIHIGWNRVVRRIFQRLGYE 335 Query: 191 TLRLIRYAMGDYSLDNLANGEWREVTD 217 L R + N+ G WR +T+ Sbjct: 336 VEALDRVMFAGLTKKNIKRGHWRILTE 362 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 59/217 (27%), Positives = 93/217 (42%), Gaps = 24/217 (11%) Query: 5 IISENTMQKTSFRNHQVKRFSSQRSTRRKPE---NQPTRVILFNKPYDVLPQFTDEAGRK 61 I K Q+ K E + +I F+KP ++ T++ Sbjct: 40 IAKGEVTIDGEVAVMGSKVLPGQKVVLGKKEVSREEKMVLIAFHKPKGIVCT-TEKREPD 98 Query: 62 TLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++I Q +Y GRLD+DSEGL+ LTNNG + ++ + G K Y V V T Sbjct: 99 NIIDYIKYSQRIYPIGRLDKDSEGLIFLTNNGDIVNKILRAGNHHEKEYIVTVNKPITAA 158 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ + GV + D T P E +D+ +I L +G NRQ+ Sbjct: 159 FLKGMAGGVPILDTVTKPCTLEAIDKV-------------------TFRIILTQGLNRQI 199 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RRM H + +L+R + + +L L G +R +TD Sbjct: 200 RRMCEHFDYKVTKLVRIRIMNVNLGRLKVGGYRNLTD 236 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 93/216 (43%), Gaps = 24/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q I+ + S + V + + R + +L NKP + +DE RKT Sbjct: 26 QVRINGQVVTDLSTQ---VGPTDAVKVGSRLLRTEQKITVLLNKPAGYVCTASDERDRKT 82 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P VY GRLD+DSEGLL++TN+G L LT P + K Y V ++ Sbjct: 83 IFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLSLALTHPRYKIEKEYEVLLDKPFNPQ 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 E L G + G E+++ + L +TL +G RQ+ Sbjct: 143 DREKLLKGFHIIGGRAKAERVEILNP-------------------THLSLTLTQGIKRQI 183 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R M +G+ RL R +G + + GEWR +T Sbjct: 184 RLMLYDLGYEVERLARIRLGPLKIGEMRPGEWRLLT 219 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 191 bits (487), Expect = 1e-47, Method: Composition-based stats. Identities = 70/209 (33%), Positives = 102/209 (48%), Gaps = 20/209 (9%) Query: 10 TMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV 69 T+ T + ++ +PE + LF KP ++ D + TLK+F P Sbjct: 52 TVPGTKVHPETDRVTVDGKTVPVEPE---PFLFLFYKPKGIVSTLHDPDEKTTLKDFFPQ 108 Query: 70 QG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNG 128 + GRLD SEG+L+LTNNG L R+ P + Y V+V+G+ + L+ LR+G Sbjct: 109 INPLIHVGRLDIQSEGVLLLTNNGDLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSG 168 Query: 129 -VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 V L+ P P E +ER + SW +ITL EGRNR+VRR+ + Sbjct: 169 KVRLDGRPVQPLELE---------------QERLTETNSWYRITLTEGRNREVRRLFDAL 213 Query: 188 GFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + L+L R A G+ L L GE+R VT Sbjct: 214 HYFVLKLTRIAFGNLDLAGLEPGEYRLVT 242 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 60/198 (30%), Positives = 90/198 (45%), Gaps = 17/198 (8%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGR 77 ++R + + + ++ NKP + +D R + +P G ++ GR Sbjct: 44 DIERDEIRVDGKLICAEETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGR 103 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD DSEGLL+LTN+G R+ P R K Y V++ G L+ G+ L DG Sbjct: 104 LDYDSEGLLLLTNDGGFAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFA 163 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 P L E + +SWL + + EGRNR +RR +G LRLIR Sbjct: 164 PDEVAL---------------EEINPKSSWLTMKISEGRNRVIRRAFEQLGHEVLRLIRT 208 Query: 198 AMGDYSLDNLANGEWREV 215 A+ D L NL G++R + Sbjct: 209 AVADLHLGNLREGDYRLL 226 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 191 bits (486), Expect = 1e-47, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 15/205 (7%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRKTLKEFIPVQ- 70 K + + +V + + + NKP ++ D+ R+++ + +P Sbjct: 39 KVTEQGLKVSTEDRVMVNGILINVEEKKVYYILNKPRGIVSSANDDKDRESVVDLVPNDI 98 Query: 71 GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVT 130 V+ GRLDR++ G L+LTN+G +T P KIY V V G + + +L+ G+T Sbjct: 99 RVFPVGRLDRETTGALILTNDGDFAYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGIT 158 Query: 131 LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 + V + + + ITL+EG+NRQ+R++ AH G P Sbjct: 159 IEGVEYKGVEISRV-------------KYDAAKDKTQFSITLHEGKNRQIRKIFAHFGLP 205 Query: 191 TLRLIRYAMGDYSLDNLANGEWREV 215 L+L RY +G +D L G++RE+ Sbjct: 206 VLKLHRYQIGYLDIDELKIGQYREL 230 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 12/220 (5%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + + S ++ + +K + +FNKP + D R T+ + Sbjct: 29 VNGEIITEPSIDINE--KLDDVEYLEKKVVHTGKVYYMFNKPSGCITATKDNIHR-TVFD 85 Query: 66 FIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 + GV+ GRLD+D+EGLL+LTN+G + ++ P K K Y+ G + + Sbjct: 86 YFDEDMNGVFHVGRLDKDTEGLLLLTNDGEFEHKVMHPEKHVEKTYFFWALGSLDDEDKK 145 Query: 124 ALRNGVTL--NDGPTLPAGAELVDEPAWLWPRNP----PIRERKSIPTSWLKITLYEGRN 177 L+ GV + N+ T PA ++ +++ + ++ + P +T+ EG+ Sbjct: 146 QLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKEEIPINSLKNKDHQPVVSGYLTISEGQK 205 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 QV+RM VG + L R ++G LD L G++R++T Sbjct: 206 HQVKRMLKAVGCYVIYLKRISIGGLKLDESLKMGDYRDLT 245 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 90/200 (45%), Gaps = 21/200 (10%) Query: 21 VKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-----GVYAA 75 V+ + + +L NKP D + D R+T+ + I V G++ Sbjct: 51 VREGQTVTVDGEEVYPLEFEYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPV 110 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP 135 GRLDR++ G+L+++N+G L RL P KIYYV+V+ L+ L+ GV L+DG Sbjct: 111 GRLDRNTTGVLLVSNDGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGA 170 Query: 136 TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLI 195 +D + + + L+EGRNRQ+RRM +G ++L Sbjct: 171 AAADQVAYLD----------------PQRKTDIALELHEGRNRQIRRMMEALGHTIVQLE 214 Query: 196 RYAMGDYSLDNLANGEWREV 215 R + L GEWR + Sbjct: 215 RAKYATLTTGRLQRGEWRRL 234 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 26/222 (11%) Query: 3 QFIISENTMQKTSF---RNHQVKRFSSQRSTRRKP--ENQPTRVILFNKPYDVLPQFTDE 57 + I M ++V R + + K EN IL NKP DV+ +DE Sbjct: 62 EMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKLHENTQKIYILLNKPKDVVTTSSDE 121 Query: 58 AGRKTLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 RKT+ E + ++ V+ GRLDRD+ G+L+LTN+G L RLT P K Y ++ Sbjct: 122 KSRKTVVELVGLKDRVFPVGRLDRDTTGVLLLTNDGDLTYRLTHPTFGVQKQYVATLDKK 181 Query: 117 PTQDALEALRNGVTLND--GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 T L+ ++ G L D P A ++D+ +W + ++E Sbjct: 182 ITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYTIW------------------VAIHE 223 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 G+N Q+ RM G+ +L+R A G + + GEWR +T Sbjct: 224 GKNHQIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGEWRFLT 265 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 103/220 (46%), Gaps = 20/220 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRF--SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 + I+ ++ + H K R + +N+ + KP V+ D R Sbjct: 49 EVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQLKNKKYYYLSMYKPIKVISSVKDPQNR 108 Query: 61 KTLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ +FIP +Y GRLD SEGLL++TN+G L RLT P K+Y+V + Sbjct: 109 LTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLITNDGELTQRLTHPRYHISKVYHVLIRER 168 Query: 117 PTQDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 L+ + G+TL+DG L PA ++ T+WL+ITL +G Sbjct: 169 ILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT-------------ETNTTWLEITLQQG 215 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 NRQ+RRM +G L+LIR G+ +L NL GE R + Sbjct: 216 INRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVRPL 255 >UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR68_ACIBL Length = 254 Score = 191 bits (485), Expect = 2e-47, Method: Composition-based stats. Identities = 62/178 (34%), Positives = 90/178 (50%), Gaps = 17/178 (9%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARL 98 + NKP ++ +DE GR+T+ +P V GRLD+ SEGLL+LTN+ A++ Sbjct: 74 YYVVNKPRGLITTASDEKGRETIYSLLPPDSPWVAPVGRLDKASEGLLLLTNDSEWAAKI 133 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K Y+VQV +P++ +EAL G+ + L ++ Sbjct: 134 TDPNSHLDKTYHVQVSTLPSEQMVEALSRGIRSDGELLLAKRVSIL-------------- 179 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R WL+I L EG+NRQ+RRM A + LRLIR A+G +L L G R +T Sbjct: 180 -RAGGKNGWLEIVLEEGKNRQIRRMVAALQIEVLRLIRVAIGPLTLGELPKGGCRALT 236 >UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B5ELL5_ACIF5 Length = 268 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 62/192 (32%), Positives = 86/192 (44%), Gaps = 16/192 (8%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRLDRDSE 83 R +V+L +KP VL DE GR T+ + +P + GRLD+ S Sbjct: 69 PGIRIDGLDITASTRQVLLLHKPRGVLTTRQDERGRATVYDLLPGSPWLAPVGRLDQASS 128 Query: 84 GLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAEL 143 GLL+ +N+ RL P + K Y+VQ+ + D + L L+ P LP Sbjct: 129 GLLLFSNDPHWAQRLLDPDQHVAKTYHVQIRPPLSTDTVVQLAADSVLDGEPCLPMQIRE 188 Query: 144 VDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYS 203 + R T WL+ L EGRNRQ+RR+ A LRLIR A+G+ Sbjct: 189 L---------------RCGGKTQWLEFILQEGRNRQIRRLLAACDREVLRLIRVAVGNLP 233 Query: 204 LDNLANGEWREV 215 L L GEWR + Sbjct: 234 LGELRAGEWRWL 245 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 63/211 (29%), Positives = 93/211 (44%), Gaps = 31/211 (14%) Query: 22 KRFSSQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI- 67 + TR P+ Q RV + +KP VL D GR TL++ + Sbjct: 76 DELVTTLGTRVDPKRQKVRVDGSRVKFNTKLVTLALHKPKRVLSAMDDPKGRFTLRDIVG 135 Query: 68 -PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL- 125 + ++ GRLD DSEGL+++TN+G L + P K Y VEG L Sbjct: 136 DKYERIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLV 195 Query: 126 RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTA 185 GV L DG ++D ++ T+ +KI L+ G+NR VRR+ Sbjct: 196 SQGVNLEDGWIKLDRCAIID---------------QNHDTTMVKIVLHSGKNRIVRRIFG 240 Query: 186 HVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VGFP RL+R +G L +L G +R ++ Sbjct: 241 AVGFPVKRLVRTQIGPIKLGDLKAGSYRVLS 271 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 65/188 (34%), Positives = 105/188 (55%), Gaps = 19/188 (10%) Query: 34 PEN-QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLT 89 P+N + ++VIL NKP V+ D GRKT+ + +P +G++ GRLD+DS G L+++ Sbjct: 57 PKNIKSSKVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIIS 116 Query: 90 NNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAW 149 NNG L LT P K Y V + G+P+++ L+ RNG+ ++ T A +V Sbjct: 117 NNGLLTLHLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIV----- 171 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 ++ + L+I L+EGRNRQ+R++ +G P + LIR +G+ L+ L Sbjct: 172 ----------KRQGNNTLLEIVLFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKLNGLKE 221 Query: 210 GEWREVTD 217 G WRE+ + Sbjct: 222 GAWREINE 229 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 +++ +++ N S + H E I+ NKP D + D Sbjct: 22 LKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKDYISATED-HHS 80 Query: 61 KTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 KT+ + IP ++ GRLD+D+EGLL++TN+G L P K K Y V Sbjct: 81 KTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPI 140 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T+D ++A + GVTL+DG PA +D +T+YEG+ Sbjct: 141 TEDDIQAFKEGVTLSDGKVKPAILTYIDNQTS-------------------HVTIYEGKY 181 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM + L L R + D LD NL +GE+R +T+ Sbjct: 182 HQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTE 222 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 70/215 (32%), Positives = 97/215 (45%), Gaps = 17/215 (7%) Query: 5 IISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLK 64 ++S N + T V + +L NKP L TD R T+ Sbjct: 30 VVSVNGQRVTELGTKVVPGRDRVSVRGEAVYPEEPFYVLLNKPKGCLTAVTDPENRPTVM 89 Query: 65 EFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 E++ V GRLD SEG+L+LTN+G L ARL P K Y+V+V T+ L Sbjct: 90 EYLHGLPARVVPVGRLDFYSEGVLLLTNDGDLSARLQSPRHHVEKTYHVKVRDQVTERHL 149 Query: 123 EALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 E LR GV L DG T PA +++ WL ITL EG++RQ+ Sbjct: 150 EVLRQGVRLEDGTVTRPAQIDMLG--------------GTKSRHDWLVITLTEGKSRQIH 195 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM +G+ ++L R A G + L G+ RE+T Sbjct: 196 RMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELT 230 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 190 bits (484), Expect = 2e-47, Method: Composition-based stats. Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 13/183 (7%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 E +P RV ++KP ++ D GR T+ E +P + + + GRLD +SEGLL+LTN+G Sbjct: 206 EPEPVRVFRYHKPVGLVTTHKDPQGRPTVFEALPEGLPRLISVGRLDLNSEGLLLLTNDG 265 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L L P + Y + G TQ+ L+ L++G+T+ A L Sbjct: 266 GLARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARL--------- 316 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 +E WL +TL EG+NR+VRR+ +G RLIR + G ++L L GE Sbjct: 317 --DKAKEGHQGANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALGTLDVGEI 374 Query: 213 REV 215 EV Sbjct: 375 EEV 377 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 68/199 (34%), Positives = 88/199 (44%), Gaps = 23/199 (11%) Query: 21 VKRFSSQRSTRRKPEN--QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGR 77 V R R E Q + L KP + DE GR+ + +P G++ GR Sbjct: 45 VMPDDEVRVDGRLIEAPAQESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLHPVGR 104 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD+DSEGLL+LT +G L LT P K Y G P L L G+ L DGP Sbjct: 105 LDKDSEGLLLLTTDGQLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPAR 164 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 A A +TL EGRNRQVRRM +G+P RL+RY Sbjct: 165 ALSARPARGGAL--------------------VTLTEGRNRQVRRMLDAIGYPVHRLLRY 204 Query: 198 AMGDYSLDNLANGEWREVT 216 +G L +L GE+R ++ Sbjct: 205 RVGGLWLGDLEPGEYRLLS 223 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 64/198 (32%), Positives = 96/198 (48%), Gaps = 16/198 (8%) Query: 23 RFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAGRLD 79 + + Q + E QPT+VIL+NKP + DE GR+T+ +P + GRLD Sbjct: 64 KVNDQLVKETRLEKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLD 123 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 ++ GLL+LTNNG L RL P + Y V+V G + + L+ L+ GV L DG Sbjct: 124 INTSGLLILTNNGELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFE 183 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 + + + + W ++ + EGRNR+VRR+ G RL+R Sbjct: 184 SIGKIPQ------------QEEDSINQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRY 231 Query: 200 GDYSL-DNLANGEWREVT 216 G +SL NL G+ +T Sbjct: 232 GQFSLPRNLRRGKSEPLT 249 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 83/204 (40%), Gaps = 18/204 (8%) Query: 16 FRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---V 72 +H R + RV+++NKP + D GR T+ + +P Sbjct: 53 VDSHDAITVDGHLIRREEAAESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRW 112 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 GRLD ++ GLL+ T +G L RL P + Y V+V G T++ +E L NGV L Sbjct: 113 INVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLE 172 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 DGP + + W + EGRNR+VRR+ G Sbjct: 173 DGPAKFSDIQQAPGGEGF--------------NHWYHCVVMEGRNREVRRLWESQGLVVS 218 Query: 193 RLIRYAMGDYSL-DNLANGEWREV 215 RL R G L L G +RE+ Sbjct: 219 RLKRVRFGPVFLTSELTMGRYREM 242 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 19/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ N + +F Q + + P + TR+ LF+KP + D GRKT+ + Sbjct: 65 VNGNVLDTPAFTVTQKDKV--YVDGKPLPTRERTRLWLFHKPRGTVTTNKDPEGRKTVFD 122 Query: 66 FIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P V GRLD ++EGLL+LTN+G L + P + Y V+ G TQ+ L+ Sbjct: 123 ILPKDMPRVVTVGRLDINTEGLLLLTNDGGLSRVIELPATGWLRRYRVRAFGKVTQEQLD 182 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 AL++GV ++ L+ + + WL I L EG+NR+V+R+ Sbjct: 183 ALKDGVAIDG---------------VLYGAIEATLDTEKGDNVWLTIGLREGKNREVKRI 227 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 H+ RLIR + G + L +L GE +E+ Sbjct: 228 LEHLDLSVNRLIRISFGPFQLGDLGEGELQEI 259 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 61/199 (30%), Positives = 97/199 (48%), Gaps = 18/199 (9%) Query: 23 RFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLD 79 R S+ R P+ P RVI+++K + D GR T+ + +P A GRLD Sbjct: 499 RVDSKPVLIRWPDRLP-RVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLD 557 Query: 80 RDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPA 139 ++ GLL+ T +G L R+T P + Y V+V G T + ++ GV L+DG PA Sbjct: 558 VNTSGLLIFTTSGDLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDG---PA 614 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 + + E +++ W ++ + EGRNR+VRRM H G RL+R Sbjct: 615 SFQFIREDD----------DKEDSVNHWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRF 664 Query: 200 GDYSLDN-LANGEWREVTD 217 G +L + L G++ E+ + Sbjct: 665 GIVTLPSRLKRGQFYELNE 683 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 189 bits (482), Expect = 4e-47, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 32/216 (14%) Query: 14 TSFRNHQVKRFSSQRSTR--------RKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 + VKR ++ T ++ R IL NKP + D+ G +T+ + Sbjct: 30 VTVNGSPVKRSDTKIDTGADDVTVCGNAISSERFRYILLNKPKGYVSSTDDKDG-ETVIK 88 Query: 66 FIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +P + G++ AGRLD+DS G L++T++GAL R+ P KIY ++ Q+ Sbjct: 89 LVPPEMRSKGLFPAGRLDKDSTGALLITDDGALAHRICSPNNHISKIYAAELSRPFEQEY 148 Query: 122 LEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +E G+ L +G P + + L + L+EG QV Sbjct: 149 VEKFAKGIVLANGEACSPCKVQKAENADNLAF-----------------VELHEGMYHQV 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 +RM A VG L R ++G L +L G+ + Sbjct: 192 KRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYL 227 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 189 bits (482), Expect = 5e-47, Method: Composition-based stats. Identities = 61/187 (32%), Positives = 96/187 (51%), Gaps = 22/187 (11%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNN 91 +PE + ILFNKP +V+ +DE R+ + +FI V + VY GRLDR + G+L+LTN+ Sbjct: 69 QPEGRKI-YILFNKPRNVITTSSDERNREMVLDFIDVNERVYPVGRLDRKTTGVLLLTND 127 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND--GPTLPAGAELVDEPAW 149 G L +L P K Y ++ Q +L L G+ L+D P A+++ + + Sbjct: 128 GMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQ 187 Query: 150 LWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLAN 209 +W I+++EG+N QVRRM +GF RL R ++ +L Sbjct: 188 VW------------------ISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVGDLRR 229 Query: 210 GEWREVT 216 G+WR +T Sbjct: 230 GQWRHLT 236 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 60/206 (29%), Positives = 92/206 (44%), Gaps = 18/206 (8%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG 71 Q +V ++ R E + +L +KP + T+ L + P + Sbjct: 35 QVVKDPGFRVPEGAALEVEGRPLEVRRHLHVLLHKPPGFVTSRTEGPSVYALLQGFPTRD 94 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 + GRLD+D+EGLL+ T +G L RLT P + K Y V +E EA R G+ L Sbjct: 95 LSPVGRLDKDAEGLLLFTTDGLLLHRLTHPRHKVAKRYLVHLERPVGPKDQEAFREGILL 154 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 + TLPA +++P +W ++ L EGR Q++RM G Sbjct: 155 DGKKTLPAELTPLEDP------------------TWAEVVLKEGRFHQIKRMFRARGNRV 196 Query: 192 LRLIRYAMGDYSLDNLANGEWREVTD 217 LRL R A+G L +L G+ R +T+ Sbjct: 197 LRLKRLALGPLELGDLPPGKARPLTE 222 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 189 bits (481), Expect = 5e-47, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 26/220 (11%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 +++ ++ S+ H + + + NKP + DE T+ + Sbjct: 29 VNDEIVKDPSY--HIDPMKDKVELEDEEILYKENHYFMLNKPAGYITATEDEE-YPTVLD 85 Query: 66 FIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ-D 120 ++ GRLD D+EGLL+LT +G RL+ P K YY VEG + D Sbjct: 86 LFSDLPIASKLFPVGRLDIDTEGLLILTTDGQFGHRLSHPKWNIEKEYYAIVEGDISNID 145 Query: 121 ALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 E+ G+ L T P ++++ S S + ITL EG+ Sbjct: 146 FSESENKGIYLKKEKYQTKPFKVKVLN---------------TSKDKSEILITLTEGKYH 190 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 V+R+ +G+P L L R +G+ LD +L GE+RE+T+ Sbjct: 191 IVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTE 230 >UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3BQR1_9BACI Length = 203 Score = 189 bits (481), Expect = 6e-47, Method: Composition-based stats. Identities = 51/184 (27%), Positives = 83/184 (45%), Gaps = 19/184 (10%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNG 92 + E++ I F+KP + D ++ + ++ GRLD+ SEGL++LTN+G Sbjct: 28 EKEDKEKIYIAFHKPVGITCTAADHIDGNIIEYINHPERIFPVGRLDKASEGLILLTNDG 87 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 + ++ K Y V V+ T ++ + GV + DG T V+ Sbjct: 88 RIANQILHGDYEHEKEYIVTVDKPFTDWFIDGMSRGVKIKDGITKQCKVTRVN------- 140 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 +S +I L +G NRQ+RRM+ G+ +L R + + LD L GEW Sbjct: 141 ------------SSTFRIILTQGMNRQIRRMSRAFGYTVTKLKRVRIMNIKLDGLEAGEW 188 Query: 213 REVT 216 R VT Sbjct: 189 RNVT 192 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 189 bits (480), Expect = 6e-47, Method: Composition-based stats. Identities = 65/206 (31%), Positives = 92/206 (44%), Gaps = 27/206 (13%) Query: 18 NHQVKRFSS-QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVY 73 H+V+ FS + R +P R + +KP + D T+ + P ++ Sbjct: 38 THEVRVFSRVELDERLLQAGKPARYYMLHKPMGCVSATRDPQ-HPTVLDLFPEDLRDDLH 96 Query: 74 AAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGV--TL 131 GRLD ++ GL++LTN+G RLT PG R K+YYV+ E Q ++A G+ Sbjct: 97 IGGRLDYNTTGLMLLTNDGQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRF 156 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 D TLPA E + ++TL+EGR QV+RM H Sbjct: 157 EDLVTLPAQLEPIGPRCA-------------------RLTLHEGRYHQVKRMFGHFDNKV 197 Query: 192 LRLIRYAMGDYSLD-NLANGEWREVT 216 LRL R MGD LD L G WR + Sbjct: 198 LRLHRERMGDICLDPQLPPGAWRPLN 223 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 189 bits (480), Expect = 7e-47, Method: Composition-based stats. Identities = 61/186 (32%), Positives = 89/186 (47%), Gaps = 24/186 (12%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNG 92 Q I+ NKP V+ D+ T+ + + P + ++ AGRLD+ S G ++LT++G Sbjct: 60 QKYVYIMLNKPEGVVSASRDKRD-TTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDG 118 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-PAGAELVDEPAWLW 151 AL L P K Y V ++ T GVTL DG T+ PA AE E + Sbjct: 119 ALAHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDPCV- 177 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANG 210 +K+TL++G Q++RM G L RYA+G +LD LA G Sbjct: 178 ----------------VKVTLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPG 221 Query: 211 EWREVT 216 +WRE+T Sbjct: 222 QWRELT 227 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 189 bits (480), Expect = 8e-47, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ +++ + K + + + NKP V+ + G +T Sbjct: 30 KVTVNGEVVRELGTIINVEKDLVKV-YGKEVSLDTKKVYYMLNKPQGVISASKSKYGEET 88 Query: 63 LKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + ++ GRLD+D+ GL++LTN+G +LT P K Y V+G Sbjct: 89 VVDLLGKKEHRLFPVGRLDKDTTGLIILTNDGDFAYKLTHPKYEKEKTYEALVKGKVDSK 148 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +L+ L+ GV ++ T A LV S ++ITL EGR RQV Sbjct: 149 SLDKLKQGVVIDGKKTSRAKVRLVKMIGV---------------NSLVEITLIEGRKRQV 193 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++M VG ++L R SL +L GE+R++T Sbjct: 194 KKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLT 229 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 188 bits (479), Expect = 9e-47, Method: Composition-based stats. Identities = 60/224 (26%), Positives = 93/224 (41%), Gaps = 34/224 (15%) Query: 2 RQFIISENTMQKTSFR---NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEA 58 ++ + +++ +F+ HQV+ F + R + NKP + D Sbjct: 25 KRVTVDGEIIKQGAFQLRPEHQVR-FDGNLLHQILTA----RYFMLNKPQGYVCSTDDP- 78 Query: 59 GRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 T+ FI ++AAGRLD D+ GL++LT++G RLT P K Y V +E Sbjct: 79 DHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWSYRLTSPRHHCEKDYLVTLEQ 138 Query: 116 IPTQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 + G+ L PT PA + +++T+ Sbjct: 139 PLAAEITAQFAAGILLRGEKLPTRPARLATLSPL-------------------KVRLTIS 179 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 EGR QV+RM A VG + L R +G LD L GE+R +T Sbjct: 180 EGRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALT 223 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNN 91 P + TR+ L++KP ++ D GR T+ + +P + V + GRLD ++EGLL+LTN+ Sbjct: 99 PPIERTRLWLYHKPSGLVTTNRDPEGRPTVFDNLPKEMPRVVSVGRLDINTEGLLLLTND 158 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L L P + Y V+ G Q L+ L+NG+ ++ + Sbjct: 159 GGLARVLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDG---------------IFY 203 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 +R+ WL + L EG+NR+++ +G RLIR + G + L +L G Sbjct: 204 GSIDASIDREQGSNVWLSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQLSDLEEGA 263 Query: 212 WREV 215 RE+ Sbjct: 264 VREL 267 >UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9J5_THEAQ Length = 245 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 18/199 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGR 77 V ++ R + +L +KP + + L E P + + GR Sbjct: 50 GFHVPEGAALEVEGRPLAVRRHLHLLLHKPAGYVTSRKEGPSVYALLEGFPTRDLSPVGR 109 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD+D+EGLL+ T +G L RLT P + K Y V + T + A + G+ L+ TL Sbjct: 110 LDKDTEGLLLFTTDGELLHRLTHPRHKVEKRYLVHLLHPATAADVRAFQEGILLSGEKTL 169 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 PA L ++P +W+++TL EGR QV+RM G L L R Sbjct: 170 PARLHLGEDP------------------TWVELTLLEGRFHQVKRMFQARGNQVLYLKRL 211 Query: 198 AMGDYSLDNLANGEWREVT 216 A+G +L++L G R +T Sbjct: 212 ALGPLTLEDLPLGAARPLT 230 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 17/183 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGAL 94 + + NKP + D+ RK + + +P + +Y+ GRLD DSEGL+ LTN+G Sbjct: 59 KRKLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEF 118 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 LT P R K Y VEG Q+ L+ ++G+ A + Sbjct: 119 SLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLS--------- 169 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 TS +++ L EG+NR++RR+ G RL+R +G L L +G+WR Sbjct: 170 ------VQNSTSLVELELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRM 223 Query: 215 VTD 217 +T+ Sbjct: 224 LTE 226 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 +R+ I++ N Q R + I+ NKP + + A Sbjct: 22 IREGIVTVNGKQIVEVDFKINPEEDIIEVDGRVAKFSKQIYIMMNKPKGYVCSNEELASL 81 Query: 61 KT---LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + + + ++ GRLD+D+EGLL++T++G R+ P KR K Y V++E Sbjct: 82 TVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGEYTHRVISPKKRIEKEYLVRLEKEV 141 Query: 118 TQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 ++ L NG+ L+DG TLPA ++D ++ +K+ +YEG+ Sbjct: 142 DEEKLNEFENGIILDDGYKTLPAKYTIID-------------------STTVKLCIYEGK 182 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWR 213 QV+RM +G + L R +G +LD +L GE+R Sbjct: 183 YHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYR 220 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 18/224 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGRKTLK 64 ++ + F ++ + + +P + NKP V+ D +KT+ Sbjct: 46 VNGEKITDPGFMVNE----NDEIIFAGEPVPYFRYEYYMLNKPAGVITATED-RYQKTVL 100 Query: 65 EFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +F + + GRLD+D+ GLL++TN+G RL P K K YY +++G + Sbjct: 101 DFFGERRRKDLSPVGRLDKDTVGLLLVTNDGGFHHRLLSPKKHIDKEYYARIDGRVDEAD 160 Query: 122 LEALRNGVTLNDGPT-LPAGAEL-------VDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 E G+ +++ T LPA + ++ + + S +++ + Sbjct: 161 REKFEKGIYVDEIFTALPAKLMIDGYRENALESDFMDLANSRAPKSALENGVSEIRVVVQ 220 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 EG+ Q++RM +G + L R +G LD L G +R +T Sbjct: 221 EGKFHQIKRMFHALGKEVIYLKRIRIGSVVLDPTLEEGTYRRLT 264 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 24/215 (11%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 I+ N S +++ + K E + R + NK + D T+ + Sbjct: 27 ITVNGFNDISAKDNIDENSDIIEYNGEKLEYKEFRYYIMNKKAGYITATED-FKENTVMD 85 Query: 66 FIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +P + + GRLD+D+EGLL+ TN+G L RL P K+YY+++E Sbjct: 86 LLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGKLNHRLLSPKNHIDKVYYIEIENNILDKD 145 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + L GV + + T PA E + + + + +T+ EG+ QV+ Sbjct: 146 ILKLEQGVDIGNYITQPAKVEKISD-------------------NKIYLTIKEGKFHQVK 186 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +M V L R + G LD+LA GE +EV Sbjct: 187 KMLEAVNNKVCYLKRVSFGKLKLDDLALGEVKEVN 221 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 17/191 (8%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEG 84 + P+ + TR+ LF+KP + D GR+T+ + +P + V + GRLD ++EG Sbjct: 231 EVDGALLPQAERTRLWLFHKPAGTVTTNKDPEGRRTVFDMLPEDMPRVLSIGRLDINTEG 290 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LTN+G L L P + Y V+ G TQ L+ LRNG++++ A L Sbjct: 291 LLLLTNDGGLSRVLELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATL- 349 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 +R+ W+ + L EG+NR+V+ + +G RLIR + G + L Sbjct: 350 --------------DREQGSNVWITLGLREGKNREVKNVLGALGLEVNRLIRLSYGPFQL 395 Query: 205 DNLANGEWREV 215 +LA G REV Sbjct: 396 GDLAEGSVREV 406 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 188 bits (478), Expect = 1e-46, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 24/216 (11%) Query: 6 ISENTMQKTSFRN---HQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + R HQV + P T + LF KP V+ D GR T Sbjct: 54 VDGEVVTEPGTRVDPKHQVILVDGRPL----PREPETFLFLFYKPKGVVSTLFDPEGRPT 109 Query: 63 LKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 L+++ P + GRLD +EG L+LTNNG L R+ P + Y V+++G + Sbjct: 110 LRDYFPGIDPLLHIGRLDFQTEGALLLTNNGDLSQRILHPRFEIPRTYLVKIQGGMSPAH 169 Query: 122 LEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE + G + L+ P +P + ER++ +W +ITL EGRNR+V Sbjct: 170 LERMARGEIRLDGRPVVPLEL---------------VPERQTSTNAWYRITLTEGRNREV 214 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RR+ + + L+L+R A G +L L GE+R VT Sbjct: 215 RRLFETLNYFVLKLVRTAFGPLTLAGLEPGEYRTVT 250 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 21/181 (11%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQA 96 + +KP VL D GR +L +FI + ++ GRLD+DSEGL++LTN+G L Sbjct: 64 KSYLALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDGDLTF 123 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPP 156 R T P K Y ++ +GI + L GV L DG Sbjct: 124 RATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGM-------------------GR 164 Query: 157 IRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 + K + W++++++EGR +RR+ VG LRLIR G SL + G WR++ Sbjct: 165 VLTFKQLSPKWIEVSIHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLN 224 Query: 217 D 217 D Sbjct: 225 D 225 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 25/225 (11%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRST----RRKPENQPTRVILFNKPYDVLPQFTD 56 M++ I S + ++ H Q + E+ + L NKP V+ TD Sbjct: 18 MKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRMEDNSQKYYLLNKPKGVITATTD 77 Query: 57 EAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQV 113 T+ + ++G+Y GRLDRD+EGLL++TNNG L RL P + K YYV+V Sbjct: 78 SQL-PTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNGPLGYRLLNPIQHIEKEYYVEV 136 Query: 114 EGIPTQDALEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 G ++ +G+ +DG PA +++ S S +T+ Sbjct: 137 NGPLDNSCIQRFYDGIMFHDGTICKPAKLSILE---------------SSPSFSKATVTI 181 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 EG+ Q+++M VG L R G++ LD L+ GE+R + Sbjct: 182 SEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLN 226 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 188 bits (477), Expect = 1e-46, Method: Composition-based stats. Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 24/204 (11%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI----PVQGVYAA 75 Q+K + Q ++ NKP V+ TD+ T+ + + P + ++ A Sbjct: 40 QLKDTDTVAVDGALLTYQKFVYLMLNKPEGVVSASTDKRD-TTVVDLVGDAYPRRELFPA 98 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP 135 GRLD+ S G ++LT++G + P K Y V ++ TQ+ GVTL DG Sbjct: 99 GRLDKTSTGFVLLTDDGGFAHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGT 158 Query: 136 TL-PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 L PA + +++ L +G Q++RM G L Sbjct: 159 ALSPAEVTALSPDGL-----------------TVRVVLRQGVYHQIKRMFGVYGAGVNAL 201 Query: 195 IRYAMGDYSLDN-LANGEWREVTD 217 R A+G +LD LA G+WRE++D Sbjct: 202 HREAIGGLALDAQLAPGQWRELSD 225 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 57/193 (29%), Positives = 92/193 (47%), Gaps = 20/193 (10%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI-----PVQGVYAAGRLDRDS 82 + TR+ LF+KP ++ D GR T+ +++ + V + GRLD ++ Sbjct: 138 VDGEKLAARGHTRLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINT 197 Query: 83 EGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAE 142 EGLL+LTN+G L L P + Y V+ +G Q L+ LR G+T++ Sbjct: 198 EGLLLLTNDGGLSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVT 257 Query: 143 LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 +R+ SWL ++L EG+NR+V+R+ +G RLIR + G + Sbjct: 258 F---------------DREQGANSWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPF 302 Query: 203 SLDNLANGEWREV 215 L +L G+ EV Sbjct: 303 QLGDLPEGDVTEV 315 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 57/191 (29%), Positives = 94/191 (49%), Gaps = 17/191 (8%) Query: 27 QRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEG 84 + P + TR+ L++KP ++ D GR T+ E +P + V GRLD ++EG Sbjct: 150 VVDGQPLPMRERTRLWLYHKPRGLVTTNKDPEGRPTVFERLPDDLPRVLTVGRLDINTEG 209 Query: 85 LLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV 144 LL+LTN+G L L P + Y V+ G TQ L+ L++G+ + Sbjct: 210 LLLLTNDGGLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEG----------- 258 Query: 145 DEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL 204 L+ +++ W+ + L EG+NR+V+R+ H+G RLIR + G + L Sbjct: 259 ----VLYGAIEATLDKEQGNNVWMTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQL 314 Query: 205 DNLANGEWREV 215 +L G+ RE+ Sbjct: 315 MDLPEGDVREI 325 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 86/218 (39%), Gaps = 42/218 (19%) Query: 26 SQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFIP---- 68 ++ R P Q RV +L +KP V+ D GR T+ + Sbjct: 110 TEPGVRVDPSRQEIRVDGSRVLTDPDVITVLLHKPAGVVTTMEDPQGRPTVADLAEQFIS 169 Query: 69 ----------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + GRLD ++EGLL+L+N+G L RL P K Y VEG Sbjct: 170 EHRTELEHPESVRLVHVGRLDTETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVE 229 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 LR G+ L+DG + D S ++ITL+ G+NR Sbjct: 230 GWVPRKLRRGIELDDGLAQADRVVVKD---------------AGPSGSIVEITLHSGKNR 274 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM VG P RL R +G + L G+ R +T Sbjct: 275 IVRRMLDAVGHPVTRLARTKLGPLGIGGLRPGQMRRLT 312 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 102/217 (47%), Gaps = 23/217 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT--RVILFNKPYDVLPQFTDEAGR 60 + I T++K + + KP N PT R+ L++K +L D GR Sbjct: 296 RIAIDGVTVEKPATL---LTSLDGVTVD-GKPVNAPTETRLFLYHKATGLLTTERDPEGR 351 Query: 61 KTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 KT+ + +P V GRLD ++EGLL+LT +G + L P + Y +V G + Sbjct: 352 KTIYDRLPADLPRVMPVGRLDMNTEGLLLLTTDGGFKRMLELPATHIERCYRARVFGDVS 411 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 QD LE L GVT++ + ER++ W+++ L+EGRNR Sbjct: 412 QDQLEELIEGVTIDGIH---------------YGSIDANLERRTGRNGWVEMKLHEGRNR 456 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +VRR+ ++G RLIR + G + L +L G EV Sbjct: 457 EVRRVLGYLGLQVSRLIRISYGPFLLGDLPVGAVEEV 493 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 93/184 (50%), Gaps = 16/184 (8%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNG 92 + +P R LF+KP V+ +D AGR+T+ ++ + V+ GRLD SEGLL++TN+G Sbjct: 58 KPEPLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVRERVFPVGRLDYHSEGLLLVTNDG 117 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L LT P K Y V V G ++ + + GV ++ G T P E++ A Sbjct: 118 QLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVLGYDA---- 173 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 + L++ L+EG+NR++R+M +P L R +L ++ G++ Sbjct: 174 ---------EKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTL-DVNRGQY 223 Query: 213 REVT 216 R +T Sbjct: 224 RRLT 227 >UniRef50_C6W5I1 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W5I1_DYAFD Length = 201 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 90/188 (47%), Positives = 118/188 (62%), Gaps = 12/188 (6%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKE--FIPVQGVYAAGRLDRDSEGLLVLTNNGALQAR 97 + L KP+++L QF+ E +TL + F + +Y GRLD DSEGLL+LTN+ L+ + Sbjct: 3 QYFLIYKPFNMLSQFSREGDHQTLADLGFTFAKDIYPVGRLDADSEGLLLLTNDNFLKTK 62 Query: 98 LTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL----NDGPTLPAGAELVDEPAWLWPR 153 L +P R + YYVQVEG T +A L GV++ TLPA + EP L R Sbjct: 63 LLEPRNRHTRTYYVQVEGEVTDEACRQLSAGVSISINGKQYKTLPAEIAKIAEPE-LPER 121 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA----- 208 NPPIR RK+IPTSWL +TL EG+NRQVRRMTA VGFPTLRL+R+++G SL + Sbjct: 122 NPPIRFRKNIPTSWLSVTLREGKNRQVRRMTAAVGFPTLRLVRWSIGKISLADKKINFPN 181 Query: 209 NGEWREVT 216 G+ EVT Sbjct: 182 PGDVWEVT 189 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 31/222 (13%) Query: 3 QFIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 + +++ NT +T ++ K F R+ + NKP V+ D+ + Sbjct: 33 RVMVNGNTETSPETKVDSNHDKIF----VDSRELSYVTLEYFMLNKPAGVVSASNDKK-Q 87 Query: 61 KTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + I + ++ GRLD+D+EGLL++TN+G L +L P K K+Y+ ++ Sbjct: 88 TTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDGDLAHQLLSPKKHVDKVYFAKLRDPL 147 Query: 118 TQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 ++ EA G+ +++ T LPA E + E +T+ EG+ Sbjct: 148 KKEDEEAFAAGLKIDEEFTALPAKLERISEQEAY-------------------VTIREGK 188 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVTD 217 Q++RM + L R +MG LD L+ GE+RE+T+ Sbjct: 189 FHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTE 230 >UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z4I7_9FIRM Length = 175 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 24/179 (13%) Query: 43 LFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 + NKP VL +D KT+ + + P +G++ GRLD+D+EGLL++TN+G L L Sbjct: 1 MLNKPAGVLSAVSDNNC-KTVIDLLDVTPKKGLFPVGRLDKDTEGLLLITNDGELSHNLL 59 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIR 158 P K K YYV++ G +E G+ + + T PA +++++ Sbjct: 60 SPAKHVDKTYYVELNGDLIDSDIELFEKGLDIGEKNLTKPAILKILEK------------ 107 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 S IT+ EG+ QV+RM +G L R MG LD NL GE+R++T Sbjct: 108 ------RSTALITITEGKYHQVKRMFQAIGLTVTFLKRLTMGPLKLDENLKPGEYRKLT 160 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 61/213 (28%), Positives = 88/213 (41%), Gaps = 25/213 (11%) Query: 10 TMQKTSFR-NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP 68 T Q T N V R R N+ + NKP + +D+ GR + + + Sbjct: 123 TTQGTRVNPNSDVIRVDGVRIN----INEDLEYFVLNKPRGMHSTMSDDLGRPCVGDLVS 178 Query: 69 V-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 Q ++ GRLD D+EGLL+LTN+G L RL P K Y V G + + Sbjct: 179 EKTASGQRLFHVGRLDADTEGLLLLTNDGELANRLMHPKYEVRKTYLATVRGEAGPNLVT 238 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 LR G+ L DGP +++D S +++ ++EGR VRRM Sbjct: 239 TLRKGIELEDGPAKADYVQIID---------------TFQGKSLIRLEIHEGRKHIVRRM 283 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 GFP RL+R + L G R + Sbjct: 284 LDEAGFPVERLVRTKLHTVQLGEQKPGSLRALN 316 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRR-KPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ + VKR + + + TR+ L++KP ++ D GR Sbjct: 129 RIAVNGKVLESPAVN---VKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRP 185 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ E +P + V + GRLD ++EGLL+LTN+G L L P + Y V+ G TQ Sbjct: 186 TVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQ 245 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L+NG+ ++ AEL ER W+ I L EG+NR+ Sbjct: 246 QQLDELKNGIAVDGVFYGSVEAEL---------------ERVQGANVWISIGLREGKNRE 290 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+ + +G RLIR + G + L +L G RE+ Sbjct: 291 VKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREI 326 >UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=Q14P18_SPICI Length = 267 Score = 187 bits (475), Expect = 2e-46, Method: Composition-based stats. Identities = 50/184 (27%), Positives = 84/184 (45%), Gaps = 15/184 (8%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 EN ++ NK + + D RKT+ ++ + +Y GRLD D+ GLL+LTN+G Sbjct: 56 ENSNKIYLMLNKRRNCVSTMYDPQHRKTVLTYVKGISERIYPVGRLDYDTSGLLLLTNDG 115 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 +T P K Y+V + G ++ L+ L G+ + G Sbjct: 116 EFTNIITHPSHIINKTYHVLLSGYLSKQQLQQLATGIEIEPGIIR------------SQA 163 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGE 211 + ++ + S L +T++E QV++M +G ++L R A+G LD L GE Sbjct: 164 QAKLVKYEEVKNVSILLLTIHEVTKHQVKKMIQSLGHEVIKLKRIAIGFLQLDETLKPGE 223 Query: 212 WREV 215 WR + Sbjct: 224 WRYL 227 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 187 bits (475), Expect = 3e-46, Method: Composition-based stats. Identities = 52/183 (28%), Positives = 90/183 (49%), Gaps = 20/183 (10%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGA 93 +N+ ++LFNKP ++ + T+ +++ VY GRLD++S+GLL+LTN G Sbjct: 68 KNEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLDYPLRVYPVGRLDKESQGLLLLTNEGD 127 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L ++ + G K Y+V V ++ + + GV + D T P E + Sbjct: 128 LVNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGECS----- 182 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +I L +G NRQ+RRM ++G+ +L R + + +LD + GE+R Sbjct: 183 --------------FRIILTQGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDGIREGEYR 228 Query: 214 EVT 216 E+T Sbjct: 229 EIT 231 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 186 bits (473), Expect = 4e-46, Method: Composition-based stats. Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 20/187 (10%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP-----VQGVYAAGRLDRDSEGLLVL 88 E TR+ LF+KP ++ D GR T+ +++ + + GRLD ++EGLL+L Sbjct: 79 AERARTRLFLFHKPRGLVTTEHDPEGRPTVFDYVREHSPEAPRLVSIGRLDINTEGLLLL 138 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 TN+G L L P + Y V+ +G Q L+ LR GVT+ Sbjct: 139 TNDGGLARVLELPATGWARRYRVRAKGSIDQPTLDRLRQGVTVEG--------------- 183 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLA 208 + + +R WL ++L EG+NR+++R+ H+G RLIR + G + L +L Sbjct: 184 VDYAQIEATLDRIQGANCWLTMSLREGKNREIKRVLEHLGLEVNRLIRLSYGPFQLADLE 243 Query: 209 NGEWREV 215 G+ EV Sbjct: 244 EGKVEEV 250 >UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKU3_9CAUL Length = 489 Score = 186 bits (473), Expect = 5e-46, Method: Composition-based stats. Identities = 61/183 (33%), Positives = 96/183 (52%), Gaps = 12/183 (6%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNG 92 + +PTRV ++KP ++ D GR T+ +P + V + GRLD +SEGLL+LTN+G Sbjct: 101 KAEPTRVWRYHKPVGLMTTHQDPQGRPTVFNSLPQELPRVISVGRLDINSEGLLLLTNDG 160 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 L L P ++Y V+ G TQ+AL+ L+ GVT+ P A+L Sbjct: 161 ELARALELPTTGWTRVYRVRALGRTTQEALDTLKTGVTVEGVQYGPIEAKL--------- 211 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 + + W+ ++L EG+NR+VR++ +G RLIR A G + L ++ GE Sbjct: 212 -DKAQEKADGRANLWITVSLNEGKNREVRKVLDSLGLKVNRLIRLAYGPFQLGDIEPGEV 270 Query: 213 REV 215 E+ Sbjct: 271 EEI 273 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 186 bits (472), Expect = 5e-46, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 84/184 (45%), Gaps = 19/184 (10%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 + I NKP + + + ++ GRLD+ S+GL+ LTN+G Sbjct: 60 AAKEKPVYIALNKPTGITCTTERNIPGNIVDFIGHKKRIFPIGRLDKPSDGLIFLTNDGD 119 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 + ++ + G K Y V+V+ T + ++A+ +GV + D TLP + + Sbjct: 120 IVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFS----- 174 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +I L +G NRQ+RRM +G+ +L R + + SLD + NG+WR Sbjct: 175 --------------FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLDGIPNGKWR 220 Query: 214 EVTD 217 +TD Sbjct: 221 YLTD 224 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 95/209 (45%), Gaps = 27/209 (12%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-----GV 72 NH + + K IL NKP ++ D R + + +P G+ Sbjct: 45 NHDLLELDGKIIKSHK--KTQLFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGI 102 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 + GRLD +S G L+LTN+G L RLT P KIY V V G TQ L+ R GV L+ Sbjct: 103 HPVGRLDMNSSGALLLTNDGNLTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLD 162 Query: 133 DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTL 192 TLPA E+++ + + LKI L EG+NR +RR+ + Sbjct: 163 GKKTLPAYLEVINN---------------NRQYTNLKIILTEGKNRHIRRIAQKFELDVI 207 Query: 193 RLIRYAMGDYSL-----DNLANGEWREVT 216 +L R A+G SL DN+ G +R ++ Sbjct: 208 KLHRTAIGPISLSTSKVDNVKLGHYRLLS 236 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 20/202 (9%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP----VQGVYAA 75 QVK K Q L NKP V+ D ++T+ + QG+ Sbjct: 52 QVKETDLVAVDGNKIAYQQYHYFLLNKPKGVISATED-RSQQTVISLLKTKDRYQGIAPV 110 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG- 134 GRLD+D+ GLL+LTN+GAL L P K K+Y ++ G+P + + G+ L DG Sbjct: 111 GRLDKDTTGLLLLTNDGALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGT 170 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 PA +++ ++ + S ++I + EG+ Q++RM VG L L Sbjct: 171 KLKPAKLKIL-------------KQDQDNNLSQIEIQIQEGKYHQIKRMFGAVGMKVLEL 217 Query: 195 IRYAMGDYSLD-NLANGEWREV 215 R +MG L +L GE++E+ Sbjct: 218 DRVSMGKLHLPADLKRGEYKEI 239 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 186 bits (472), Expect = 6e-46, Method: Composition-based stats. Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 17/184 (9%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNN 91 PE + TR+ L++KP ++ D GR T+ + +P + + + GRLD ++EGLL+LTN+ Sbjct: 530 PERERTRLFLYHKPRGLMTTHADPEGRPTVFDNLPEDLPRLISIGRLDFNTEGLLLLTND 589 Query: 92 GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLW 151 G L L P + Y V+ G TQ L+ L +GV ++ P A+L Sbjct: 590 GGLARALELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKL-------- 641 Query: 152 PRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 ER WL + EG+NR+VR + AH+G RLIR + G + L + G+ Sbjct: 642 -------ERDQGANVWLVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLEIEEGQ 694 Query: 212 WREV 215 EV Sbjct: 695 VEEV 698 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 186 bits (472), Expect = 7e-46, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 26/218 (11%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ ++ +++ + + NK D + D KT+ + Sbjct: 32 VNGLVVKDP---GYKITLTDIVVYYDETLNRKEFYYFMMNKAPDCITATEDPRE-KTVMD 87 Query: 66 FIPVQG----VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 ++ + ++ GRLD+++EGLL+ T +G L T P K YY ++ T Sbjct: 88 YLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHYYTSPKHFVEKEYYAEISAPVTAFD 147 Query: 122 LEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 + +G+TL+DG TLPA + P I T WL+ EG+ RQ+ Sbjct: 148 ISQFESGITLDDGYKTLPARLAI------------PDPSNPHIATVWLR----EGKYRQI 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 RRM +G L R MG+ LD +L G +RE+T+ Sbjct: 192 RRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTE 229 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 185 bits (471), Expect = 7e-46, Method: Composition-based stats. Identities = 59/200 (29%), Positives = 94/200 (47%), Gaps = 21/200 (10%) Query: 20 QVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ---GVYAA 75 V + + + +P + + ++ NKP VL D + + P + + A Sbjct: 40 HVDPDTQEVTVYGEPVDYREFIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPA 99 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG- 134 GRLD+D+EG L+LTN+G L RL P K K Y V ++ +++ + L GV + G Sbjct: 100 GRLDKDTEGFLLLTNDGQLAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGY 159 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 T PA AE+ + + + +T+ EG+ QV++M VG + L Sbjct: 160 KTKPAKAEIKTNDS---------------GNTVIYLTITEGKYHQVKQMAKAVGNEVVYL 204 Query: 195 IRYAMGDYSLD-NLANGEWR 213 R +MG SLD LA GE+R Sbjct: 205 KRLSMGRVSLDPALAPGEYR 224 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 107/220 (48%), Gaps = 27/220 (12%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRKTLK 64 I+ ++ S +V+ +S+ + +P + + NKP VL D +KT+ Sbjct: 29 INGEIVKDPS---MEVQPGNSEIVYKDEPIHYEEFSYYMMNKPVGVLSSTED-RKQKTVL 84 Query: 65 EFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + ++ GRLD+DSEGLL++ N+GAL +L P K Y V++ G +++ Sbjct: 85 DLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALAHKLLSPKMHIEKKYLVEIPGKISEEE 144 Query: 122 LEALRNGVTLN-DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ LR G+ + D +PA A + + S +++ + EG+ Q+ Sbjct: 145 LDRLRQGIQYDTDLIAMPAKARCLS---------------STEEGSRVEVIIMEGKFHQI 189 Query: 181 RRMTAHV--GFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 ++M + + +L R +MG LD LA GE+R++++ Sbjct: 190 KKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSE 229 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 17/181 (9%) Query: 37 QPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGAL 94 + TR+ L++KP ++ +D GR T+ + +P + V + GRLD ++EGLL+LTN+G L Sbjct: 140 ERTRLWLYHKPSGLVTTNSDPEGRPTVFDNLPEELPRVMSIGRLDINTEGLLLLTNDGGL 199 Query: 95 QARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRN 154 L P + Y V+ G Q L+ L++G+ ++ L+ Sbjct: 200 ARVLELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAVDG---------------VLYGAI 244 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWRE 214 + +R W+ + L EG+NR+++ + +G RLIR + G + L +L + +E Sbjct: 245 DAVLDRSQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLGDLPESQVQE 304 Query: 215 V 215 V Sbjct: 305 V 305 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 96/202 (47%), Gaps = 19/202 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYA 74 +++ + +R + E + +R+I+++KP + +D +KT+ + +P + Sbjct: 56 GNEIIHINGRRIYFKNAEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWIS 115 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 GRLD ++ GLL++TN+G L + P ++ + Y V++ G T++ + +R GV L+DG Sbjct: 116 IGRLDINTSGLLLITNDGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDG 175 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 E W +I L EGRNR++RR+ RL Sbjct: 176 VAHVDTFE---------------HTGGEGANQWFRIILKEGRNREIRRLVESQNLKVSRL 220 Query: 195 IRYAMGDYSLDN-LANGEWREV 215 IR G +L + L G++ E+ Sbjct: 221 IRTRYGPLNLPSHLKRGQFMEL 242 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 185 bits (471), Expect = 8e-46, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 86/215 (40%), Gaps = 20/215 (9%) Query: 6 ISENTMQ-KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLK 64 ++ Q R ++ + + + RV+++ KP + D R T+ Sbjct: 31 VNGQVAQVGERIEPGDELRIDGRKVSFQIEDEIRRRVLIYYKPEGEICSRNDPESRPTVF 90 Query: 65 EFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + +P GRLD +S GLL+ TN+G L RL P + Y V+V G T Sbjct: 91 DQLPAIANDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEVEREYAVRVMGEVTPQI 150 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + GV L+DG PA E E W ++ + EGRNR+VR Sbjct: 151 KNNMLKGVVLDDG---PAKFESFSEIGG------------EGINRWYQVVVKEGRNREVR 195 Query: 182 RMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 R+ G RL+R G L L G W E+ Sbjct: 196 RIFESQGLKVSRLLRTRYGTVILPRELRTGRWMEL 230 >UniRef50_Q2NZN4 Pseudouridine synthase n=13 Tax=Xanthomonadaceae RepID=Q2NZN4_XANOM Length = 286 Score = 185 bits (471), Expect = 9e-46, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 99/215 (46%), Gaps = 16/215 (7%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRKTLK 64 +S ++ F ++FS + P P R ++ NKP V+ DE GR T+ Sbjct: 65 VSARVVRDPEFPIRADQQFSITVDGQ--PLTGPARCYLMLNKPRGVVTTVRDEQGRDTVY 122 Query: 65 EFIPVQGV---YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 G+ GRLD+ SEGLL+ +N+ A +T P K Y+VQ++ +P Sbjct: 123 RCFDGAGLPWIAPVGRLDKASEGLLLFSNDPQWAATVTDPATGPDKTYHVQIDCLPNVAQ 182 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L L+ GV D + L R+ +WL+I L EGRNRQ+R Sbjct: 183 LAQLQAGVVDPD----------PEGEGMLLRAKQVSVLREGERNAWLEIVLDEGRNRQIR 232 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R+ A V LRL+R A+G ++ L G WR ++ Sbjct: 233 RLLAAVDIGVLRLMRVAIGPLAMGELGKGAWRMLS 267 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 185 bits (470), Expect = 9e-46, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 31/210 (14%) Query: 23 RFSSQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI-- 67 ++ TR P Q RV + NKP VL D GR TL++ + Sbjct: 49 ELVTELGTRVDPHKQQVRVDGSRVRVNPNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGD 108 Query: 68 PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL-R 126 + ++ GRLD DSEGL+++TN+G L + P K Y +EG + L Sbjct: 109 KYERIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVT 168 Query: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186 GV L+DG ++D S + +K+ L+ G+NR VRR+ Sbjct: 169 TGVQLDDGWIKLDHCAIID---------------SSRDHTMVKVVLHSGKNRIVRRIFGS 213 Query: 187 VGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +GFP RL+R +G L +L G +R ++ Sbjct: 214 IGFPVKRLVRTQIGPIKLGDLKPGSYRVLS 243 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 29/212 (13%) Query: 10 TMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVI-LFNKPYDVLPQFTDEAGRKTLKEFIP 68 T++ ++ +K + + + P ++ + NKP + + G + + + +P Sbjct: 41 TVKGEFAKSPALKVDPATVRVDGEALDAPDGILVMLNKPLGYVCSHDNNEGMR-IYDLLP 99 Query: 69 VQ------GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 + + + GRLD+D+ GL+++T++ L +LT P K+Y V V+ D + Sbjct: 100 ERWEFRNPKIVSVGRLDKDTSGLILVTDDTKLVHQLTSPKHHVDKVYQVSVDCPLQSDII 159 Query: 123 EALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ GV L +G LPA E+V E +TL EG+ QV Sbjct: 160 DSFAKGVVLGEGAEQCLPAKIEIVSENVA-------------------NVTLNEGKYHQV 200 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 RRM A G+ L R G Y L +LA GEW Sbjct: 201 RRMFAACGYHVEALHRSQFGQYRLQDLAQGEW 232 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 60/184 (32%), Positives = 82/184 (44%), Gaps = 26/184 (14%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQA 96 R + NKP V+ D T + I + AGRLD D+ GLL++T++G Sbjct: 61 RYFMLNKPAGVVSATKDSNN-STALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWNH 119 Query: 97 RLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRN 154 RLT P KIY V + T D E L NGV L P LPA E +D+ L Sbjct: 120 RLTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVL---- 175 Query: 155 PPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWR 213 +++ EG+ QV+RM A +G L R +G LD L G++R Sbjct: 176 ---------------LSIAEGKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYR 220 Query: 214 EVTD 217 +TD Sbjct: 221 ALTD 224 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 19/208 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ ++ +F+ + + PTRV ++KP +L +D GR T+ + Sbjct: 45 VNGEILRTPAFKVMAGD--DVRVDGESIGQRPPTRVWRYHKPVGLLTTHSDPQGRDTVFQ 102 Query: 66 FIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P V + GRLD +SEGLL+LTN+G L L P + Y V+ G + AL Sbjct: 103 TLPQDMGRVISVGRLDLNSEGLLLLTNDGELARVLELPSTGWTRRYRVRAYGNASDKALA 162 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 L NG ++ P + +R++ WL + + EG+NR+VR++ Sbjct: 163 ELENGTVVDGVVYGPVEVTV---------------DRRTGANVWLTVGIKEGKNREVRKV 207 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGE 211 VG RL+R A G + L +L GE Sbjct: 208 LQSVGLTVNRLMRVAYGPFQLGSLKRGE 235 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 184 bits (469), Expect = 1e-45, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 99/207 (47%), Gaps = 8/207 (3%) Query: 17 RNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ----GV 72 + H + + + +P I+ NKP V+ D + KT+ + + + + Sbjct: 38 KIHVDEEKDIVKYENKIINYKPFVYIMMNKPAGVISATED-SHHKTVIDLLNDEYRTYDI 96 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 + GRLD D+EGL++LTN+G L L P K K YYV++ ++D ++ L NG+ L Sbjct: 97 FPVGRLDIDTEGLILLTNDGILSHNLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLE 156 Query: 133 DG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSW-LKITLYEGRNRQVRRMTAHVGFP 190 + T A E++ + + E ++ + IT+ EG+ QV+RM VG Sbjct: 157 ENFITKNAKVEIICNNSEKESEDFDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNE 216 Query: 191 TLRLIRYAMG-DYSLDNLANGEWREVT 216 L L R MG +NL G +RE+T Sbjct: 217 VLYLKRVKMGNLLLDENLELGGYRELT 243 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 184 bits (468), Expect = 1e-45, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 27/207 (13%) Query: 17 RNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGV 72 + ++ KP N P ++ +KP VL TD + + T + +P V Sbjct: 36 QANRQVEAEQSVHLDGKPVNPPGDIYLMMHKPAGVLSATTD-SSQPTALDLLPRGLASRV 94 Query: 73 YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLN 132 + AGRLD+D+ GLL+LT++G +T P + K Y V + + A AL GV LN Sbjct: 95 HIAGRLDKDTTGLLLLTSDGQWSHAVTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLN 154 Query: 133 DG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFP 190 T PA + + +T+ EGR QV+RM A VG Sbjct: 155 GETTETRPAEVRV-------------------HNNQLIDLTIGEGRYHQVKRMLAAVGNR 195 Query: 191 TLRLIRYAMGDYSLDN-LANGEWREVT 216 L R+ +G LD+ LA GE+R +T Sbjct: 196 VEALHRFRIGSIELDDKLAPGEFRALT 222 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 89/216 (41%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK- 61 + ++ T+ + R + + R ++ NKP + DE GR Sbjct: 50 RVTVNGETVTEPGRRI-DPDVDEVAVDDQAVQLDTSKRYLMLNKPVGIYSSLRDERGRPD 108 Query: 62 -TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++ GRLD ++ GLL+LTN+G L L P K Y +V G T Sbjct: 109 LREFTEEFEERLFNVGRLDAETSGLLILTNDGDLAHVLAHPSFGVLKTYIAKVTGRVTPQ 168 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ L GV L DGP A ++ + ++ITL+ GRNR V Sbjct: 169 TIQRLTQGVDLEDGPIQADRARILS---------------GGGDQTLVEITLHSGRNRIV 213 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM VG P L+R G L +L G R++T Sbjct: 214 RRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLT 249 >UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas RepID=B4W9R3_9CAUL Length = 519 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 62/195 (31%), Positives = 95/195 (48%), Gaps = 10/195 (5%) Query: 25 SSQRSTRRKP--ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDR 80 + KP Q TRV ++KP +L +D GR T+ + +P V + GRLD Sbjct: 129 DDVITVDGKPIGSTQATRVWRYHKPAGLLTSHSDPTGRPTVFDALPAGLPRVISVGRLDL 188 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAG 140 +EGLL+LTN+G L L P + Y + G TQ+ L+ L++GV ++ P Sbjct: 189 ATEGLLLLTNDGELSRALELPATSLVRQYRARARGKITQEQLDKLKDGVVVDGVSYGPIE 248 Query: 141 AELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG 200 A L + + ++ W+ +++ EG+NR+VR++ VG RLIR A G Sbjct: 249 ATL------DKAKESKSEDGRAPANLWISVSITEGKNREVRKVLESVGLTVNRLIRLAYG 302 Query: 201 DYSLDNLANGEWREV 215 + LD L G EV Sbjct: 303 PFRLDVLPIGSVEEV 317 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 93/218 (42%), Gaps = 32/218 (14%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 I + + T + V F + R+ T + NKP + DE KT+ + Sbjct: 39 IPQKVGKSTIDLANDVVTFDGEVLEYRE-----TIYFMLNKPKGYVCAAKDERL-KTVLD 92 Query: 66 FIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +P + ++ GRLD D+ GL++LT++G +T P ++ K Y V + + Sbjct: 93 LLPPALASREPFSCGRLDIDTTGLVILTDDGTWAHGITSPKRKCEKSYLVGSVSELSDED 152 Query: 122 LEALRNGVTL--NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L GV L +D T PA E +DE ++ + EGR Q Sbjct: 153 MRNLEQGVYLDGDDKITAPAKIEKIDEK-------------------TYRLKITEGRYHQ 193 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 V+RM V L R +G SL D+L G WR++T Sbjct: 194 VKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLT 231 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 96/205 (46%), Gaps = 20/205 (9%) Query: 13 KTSFRNHQVKRFSSQRSTRRKPENQPTRVIL-FNKPYDVLPQFTDEAGRKTLKEFIPVQG 71 K + + QV+ F + + + + +V+L F+KP + + + Sbjct: 32 KPAVQGMQVEDFQEIKVDGKAIKREEKKVLLVFHKPKGIECTANPNVKKNVISYINYPIR 91 Query: 72 VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL 131 VY AGRLD+DSEGLL+LTN G L ++ + G K Y V V+ T++ L+++R GV + Sbjct: 92 VYYAGRLDKDSEGLLLLTNQGELVNQIMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPV 151 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 T E E +ITL +G NRQ+RRM ++G+ Sbjct: 152 LGTITRKCKVEKESEKV-------------------FRITLTQGLNRQIRRMCNYLGYEV 192 Query: 192 LRLIRYAMGDYSLDNLANGEWREVT 216 ++L R + + L NL G +RE T Sbjct: 193 VKLKRIRIMNIELGNLPIGSYREAT 217 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 59/209 (28%), Positives = 90/209 (43%), Gaps = 23/209 (11%) Query: 12 QKTSFRNHQVKRFSSQR--STRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV 69 Q + +V S R + I NKP + + T+ E + V Sbjct: 41 QVVTELGTKVDPESDDVMFDGHRVTLAESHVYIALNKPPGYVTSCL-QKQETTVMELVAV 99 Query: 70 -QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNG 128 Q V+ GRLD+ S GLL++T++G L RL+ P K Y V + + L+A+R G Sbjct: 100 DQRVFPVGRLDKPSCGLLLMTSDGGLHQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRG 159 Query: 129 VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVG 188 + + T PA + + + +L I L EGRNRQ+RRM +G Sbjct: 160 MVITGRKTRPAKVKRLSDRRFL-------------------IILQEGRNRQIRRMAEMLG 200 Query: 189 FPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + L R + L +LA G WR +T+ Sbjct: 201 NRVVLLRRIRIAHIHLGDLAEGRWRYLTE 229 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 184 bits (467), Expect = 2e-45, Method: Composition-based stats. Identities = 62/212 (29%), Positives = 96/212 (45%), Gaps = 19/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ + +F + PE + TR+ L++KP V+ D GR TL E Sbjct: 58 VNGEVLASPAFTVTAEDEI--RVDGEPLPERERTRLFLYHKPIGVVTTNRDPEGRTTLFE 115 Query: 66 FIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALE 123 +P + + + GRLD +SEGLL+LTN+G L L P + Y V+ +G Q L+ Sbjct: 116 LLPGHLPRLVSVGRLDINSEGLLLLTNDGGLARVLELPETGWLRRYRVRAKGTVDQAQLD 175 Query: 124 ALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRM 183 AL G+ + P A + +R W+ + L EG+NR+VR + Sbjct: 176 ALIKGIVVEGVEYGPIEA---------------VLDRVQGANVWITVALREGKNREVRNV 220 Query: 184 TAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +G RLIR + G + L +A G EV Sbjct: 221 LGALGLQVNRLIRISYGPFQLGEIAEGGVEEV 252 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 19/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + S++ + + ++ + I NKP D+ K Sbjct: 26 KVYVNGTILLDLSYQVNDTDIV--EVEGKKINLKEDKIYIAINKPIGYASTVKDKFADKK 83 Query: 63 LKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + I VY GRLD+DS GLL+LTN+G LT P KIY V V+G P + Sbjct: 84 VVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTYELTHPKFEHKKIYEVLVKGKPNKTE 143 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 ++ L++G+ L+ + E ++ + ++T++EGRNRQ+R Sbjct: 144 IKQLKDGILLDGYKLKKSKIEFIENV---------------KNDTKYRVTIFEGRNRQIR 188 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREV 215 RM + P L L R +G+Y ++N L +GE++ + Sbjct: 189 RMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLL 223 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 20/193 (10%) Query: 28 RSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVYAAGRLDRDSE 83 R + + E++ RV+++ KP + D R T+ + +P GRLD +S Sbjct: 53 RKVQFQIEDEIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINST 112 Query: 84 GLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAEL 143 GLL+ TN+G L RL P + Y V+V G T + + NGV L DG PA E Sbjct: 113 GLLLFTNDGELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDG---PAKFES 169 Query: 144 VDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYS 203 E W ++ + EGRNR+VRR+ G RL+R G Sbjct: 170 FSEIGG------------EGINRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVI 217 Query: 204 L-DNLANGEWREV 215 L L G W E+ Sbjct: 218 LPRELRTGRWMEL 230 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 22/194 (11%) Query: 25 SSQRSTRRKPENQPTR--VILFNKPYDVLPQFTDEAGRKTLKEFIPVQ-GVYAAGRLDRD 81 ++ +P TR ++LF KP ++ + T+ EF+ VY GRLD+D Sbjct: 55 DAEVFLDGRPVKAETRQVLLLFYKPRGIVCSTKKQRQETTVTEFLDYPVRVYPVGRLDKD 114 Query: 82 SEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGA 141 SEGLL+LTN G L R+ + G K Y V V+ T+ + + +GV + T P Sbjct: 115 SEGLLLLTNQGDLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTV 174 Query: 142 ELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGD 201 + + I L +G NRQ+RRM ++G+ L R + + Sbjct: 175 YKTGDKS-------------------FSIILTQGLNRQIRRMCEYLGYHVCTLKRIRIMN 215 Query: 202 YSLDNLANGEWREV 215 +LD L GE+RE+ Sbjct: 216 LTLDGLKCGEYREI 229 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 183 bits (466), Expect = 3e-45, Method: Composition-based stats. Identities = 58/186 (31%), Positives = 88/186 (47%), Gaps = 17/186 (9%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTN 90 E IL +K + + D GRKT+ + +P + V+ GRLD SEG+L+LT Sbjct: 65 EKSKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLTT 124 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G L R+T P KIY+V + G ++ L ++NG+ L D L A ++ Sbjct: 125 DGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKI------- 177 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 + T+ ++ L +G NRQ+RRM LRL R G L L G Sbjct: 178 ------KAISEVGETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGALKPG 231 Query: 211 EWREVT 216 +WRE++ Sbjct: 232 KWRELS 237 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 183 bits (465), Expect = 3e-45, Method: Composition-based stats. Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 12/183 (6%) Query: 35 ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNG 92 E + TRV ++KP ++ D R T+ + +P + + + GRLD +SEGLL+LTN+G Sbjct: 79 EPEATRVFRYHKPSGLMTTHNDPKQRPTVFQALPRDLPRLISVGRLDLNSEGLLLLTNDG 138 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 AL L P + Y + G TQ L+ L++G T+ P A L Sbjct: 139 ALSRALEMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGPIEARL--------- 189 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 + + W+ +TL EG+NR+VRR+ +G RLIR + G ++L L G+ Sbjct: 190 -DKAQEKAGGGKNIWITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFALGTLLPGQV 248 Query: 213 REV 215 EV Sbjct: 249 EEV 251 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 27/204 (13%) Query: 20 QVKRFSSQRSTRR-KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAA 75 V F++ + + I+ +KP L D+ T+ + +P Q ++ A Sbjct: 55 DVDEFAAVSVNGKTLQQGHCAHYIMLHKPAGYLSATEDD-THPTVLQLLPPGLSQCLHIA 113 Query: 76 GRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG- 134 GRLDR + GL++LTNNG +LT PG K+Y V D + G+ Sbjct: 114 GRLDRATTGLMILTNNGTWSRQLTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQ 173 Query: 135 -PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 193 T PA EL++ + ++T+YEGR QV+RM VG + Sbjct: 174 LTTAPATLELLEP-------------------TLARLTIYEGRYHQVKRMFHAVGNRVIA 214 Query: 194 LIRYAMGDYSLD-NLANGEWREVT 216 L R +G L+ +LA G +R +T Sbjct: 215 LHREQIGHLQLNSDLAEGNFRMLT 238 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 183 bits (465), Expect = 4e-45, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 24/209 (11%) Query: 13 KTSFRNHQVKRFSSQRSTRRKP---ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP- 68 + + ++ K + + + + NKP + T+ + + F+ Sbjct: 36 RPAALGNRYKPGDTVEVDGSLITAAKKEKRVYLALNKPPG-ITTTTELHIKDNIISFVNY 94 Query: 69 VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNG 128 Q ++ GRLD+DSEGL+ LTN+G + ++ + K Y V+V + L + G Sbjct: 95 PQRIFPIGRLDKDSEGLIFLTNDGDIINKILRAANNHEKEYVVRVNKPIDTNFLHQMSQG 154 Query: 129 VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVG 188 V + D TLP ++ +ITL +G NRQ+RRM ++G Sbjct: 155 VPILDTRTLPCKVQMTGRQ-------------------TFRITLTQGLNRQIRRMCEYLG 195 Query: 189 FPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + + L R + + LD L G+WR +++ Sbjct: 196 YTVVGLQRVRIMNVRLDKLPLGKWRYLSE 224 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 183 bits (464), Expect = 4e-45, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 91/184 (49%), Gaps = 17/184 (9%) Query: 36 NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGA 93 + L NKP D L DE R + I Q +Y GRLD+ SEGL+++TN+G Sbjct: 59 PEAKIYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGE 118 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L +L+ P K Y+++++G + + + AL++GV L G T P + + Sbjct: 119 LSNKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKM--------- 169 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +S S ++ L EG+NR++RRM A G L R +G +L G++R Sbjct: 170 ------HRSFKKSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYR 223 Query: 214 EVTD 217 ++T+ Sbjct: 224 KLTE 227 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 183 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 29/225 (12%) Query: 1 MRQFIISENTMQK---TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDE 57 +R+ ++S + QV FS + + ++ +KP V+ D Sbjct: 44 VRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLDEHILQANAPVYVMLHKPIGVVSATKDI 103 Query: 58 AGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 KT+ + + + ++ AGRLD +S GLL+LTN+ L P + K+Y V + Sbjct: 104 Q-HKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSDALMSPTHKVDKVYRVTLA 162 Query: 115 GIPTQDALEALRNGVT--LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 T++ + A G+ D T PA ++ + ++TL Sbjct: 163 NPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVA-------------------EVTL 203 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +EG+ Q++RM P + L R ++GD LD LA GE R +T Sbjct: 204 HEGKYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALT 248 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 183 bits (464), Expect = 5e-45, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 95/217 (43%), Gaps = 21/217 (9%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQF-TDEAGRKTLK 64 ++ T++ + K KP + + KP L D GRKTL Sbjct: 30 VNGKTVKNLGLKIDPKKDVVEVEGKIVKPT-EKKIYLAIYKPVGYLSAVGKDRFGRKTLT 88 Query: 65 EFIPVQG----VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +F+ ++ GRLD +SEGLL+LTN+G ++ P K+Y V+V G +Q+ Sbjct: 89 DFLNELKIPYKLFPVGRLDYNSEGLLILTNDGEFANKVAHPRNEIKKVYKVKVAGEVSQE 148 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ + G L DG P +++ ++ +WL + ++ G+ R + Sbjct: 149 TLKKMEEGTILEDGFFKPDKIKML---------------KREEDGTWLLVEIHSGKKRII 193 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR G RLIR +G + NL ++R +++ Sbjct: 194 RRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSE 230 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 183 bits (464), Expect = 6e-45, Method: Composition-based stats. Identities = 58/193 (30%), Positives = 81/193 (41%), Gaps = 21/193 (10%) Query: 25 SSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRKTLKEFIPV-QGVYAAGRLDRDS 82 + + R L NKP V+ D GR T++ + VY GRLD DS Sbjct: 50 DRVEFDGLEIATEEQREYWLLNKPRGVVSSVVDPEGRPTVRSLVATTSRVYPVGRLDVDS 109 Query: 83 EGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAE 142 EGLL+LTN+G L +LT P K Y V V+ + LR GV ++ + Sbjct: 110 EGLLILTNDGPLTYQLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSV- 168 Query: 143 LVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY 202 ++ ++I L EGRNRQ+RRM VG RL+R +G Sbjct: 169 ------------------GTVGPRLVRIVLTEGRNRQIRRMVGAVGLSVERLVRVRIGPL 210 Query: 203 SLDNLANGEWREV 215 +L G R + Sbjct: 211 VDPHLPPGVARRL 223 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 182 bits (463), Expect = 6e-45, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 17/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + K +V +K + L NKP + + + Sbjct: 30 QVKVNGKIITKL---GKKVSSDDIVYVDNKKINEESFEYYLLNKPAGYVSSNRSYPNQPS 86 Query: 63 LKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + E I + +++ GRLD+D+ G+L+LTN+G L +LT P R + Y V+GI +D Sbjct: 87 VIELIKTKTRIFSVGRLDQDTTGVLLLTNDGELTQKLTHPKHRIKRTYAAWVKGIVNEDE 146 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 +E L + + P A ++ + + S ++IT+ EG+N +++ Sbjct: 147 IEQLTKPIRFDGEIYFPQAARIL-------------KVDQKRQESLIEITIAEGKNHEIK 193 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++ +G P ++L R ++ NL G+ R +++ Sbjct: 194 KILDFIGHPVIKLNRDMFDGITIGNLKKGQHRALSE 229 >UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745920 Length = 235 Score = 182 bits (463), Expect = 7e-45, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 94/205 (45%), Gaps = 27/205 (13%) Query: 18 NHQVKRFSSQ-RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIP---VQGVY 73 H+V RFS+ E + I+ +KP L D T+ + I + ++ Sbjct: 38 QHEVDRFSTVWLDDTLVQEGESALYIMLHKPVGYLSATRDPQ-HPTVIDLIDHPARETLH 96 Query: 74 AAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTL-- 131 AGRLDR S GLL+LTN+G RLT+PG++ K+Y V+ +A+E G Sbjct: 97 IAGRLDRSSSGLLLLTNDGRWSRRLTEPGEKVDKVYLVETAEPIAPEAVELFAKGFYFHT 156 Query: 132 NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPT 191 D TLPA ++ E ++TL+EGR Q++RM VG Sbjct: 157 EDLTTLPAELGILGE-------------------RLARVTLHEGRYHQIKRMFHRVGNRV 197 Query: 192 LRLIRYAMGDYSLD-NLANGEWREV 215 + L R ++G L L G+WRE+ Sbjct: 198 ISLHRESIGSLVLPVELFPGQWREI 222 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 182 bits (462), Expect = 8e-45, Method: Composition-based stats. Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 20/199 (10%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV----QGVYAAGRLDR 80 + + Q + NKP V+ TD A KT+ + ++ GRLD+ Sbjct: 46 DTVFLDDVQVRYQQYFYYVMNKPVGVITATTDSAA-KTVMDLFNTTDFRDDLFPVGRLDK 104 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL-PA 139 D+EG+LV+TN+GAL L P K+Y +V G T L +G+TL DG L PA Sbjct: 105 DTEGILVITNDGALSHDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPA 164 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 AE+V + + + ++I ++EG+ QV+RM +G + L R Sbjct: 165 QAEIV-------------QFHEIENFTTIRIMIHEGKYHQVKRMVGTLGERVVGLRRIKF 211 Query: 200 GDYSLD-NLANGEWREVTD 217 G +L L G +R +TD Sbjct: 212 GSLTLPVGLLAGNYRALTD 230 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 182 bits (462), Expect = 8e-45, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 96/210 (45%), Gaps = 31/210 (14%) Query: 23 RFSSQRSTRRKPENQPTRV-------------ILFNKPYDVLPQFTDEAGRKTLKEFI-- 67 ++ TR P+ Q RV + NKP VL D GR TL++ + Sbjct: 50 ELVTELGTRVDPKRQQVRVDGSRIRLNPRHITLALNKPRKVLSTMDDPKGRYTLRDIVGD 109 Query: 68 PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEAL-R 126 + ++ GRLD DSEGL+++TN+G L + P K Y +EG + L R Sbjct: 110 KYERIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVR 169 Query: 127 NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAH 186 GV L+DG ++D + + +K+ L+ GRNR VRR+ Sbjct: 170 TGVQLDDGWIKLDHCSIID---------------SNRDQTIVKVVLHSGRNRIVRRIFGA 214 Query: 187 VGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +GFP RL+R +G L ++ +G +R ++ Sbjct: 215 IGFPVKRLVRTQIGPIKLGDIKSGSYRVLS 244 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 182 bits (462), Expect = 8e-45, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 89/198 (44%), Gaps = 23/198 (11%) Query: 25 SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQ----GVYAAGRLDR 80 R R Q ++ NKP V+ D+ R T+ + +P + G++ AGRLDR Sbjct: 48 DEIRVDGRVYGYQEHLYLMLNKPQGVVSATDDKVHR-TVLDLVPPELRRRGLFPAGRLDR 106 Query: 81 DSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG-PTLPA 139 D+ G +++T++G + P K Y ++G ++ L L GV L DG PA Sbjct: 107 DTVGFVLITDDGEFAHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTKCRPA 166 Query: 140 GAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM 199 ++ +S ++I + EGR Q++RM A VG L L R + Sbjct: 167 ELTVL----------------QSGERPLIQIVIVEGRYHQIKRMFAAVGRRVLTLKRTKI 210 Query: 200 GDYSLD-NLANGEWREVT 216 G +LD +L G+ ++ Sbjct: 211 GGLALDPSLKEGDCIAIS 228 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 182 bits (462), Expect = 9e-45, Method: Composition-based stats. Identities = 56/200 (28%), Positives = 80/200 (40%), Gaps = 19/200 (9%) Query: 20 QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYAAG 76 V R + + E RV+ + KP L D GR+T+ + +P + G Sbjct: 47 SVVRIDGHIVSAKVQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVG 106 Query: 77 RLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPT 136 RLD ++ GLL+ T +G L RL P ++ + Y V+V G T+ + L GV L DG Sbjct: 107 RLDANTSGLLLFTTDGELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLA 166 Query: 137 LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIR 196 + + EGRNR+VRR+ RL R Sbjct: 167 RFEDVVYAGGEGM---------------NHTFYVVINEGRNREVRRLWESQECTVSRLKR 211 Query: 197 YAMGDYSLD-NLANGEWREV 215 GD LD L G W E+ Sbjct: 212 VRYGDIFLDKKLPRGGWMEL 231 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 181 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 67/212 (31%), Positives = 104/212 (49%), Gaps = 17/212 (8%) Query: 6 ISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKE 65 ++ ++ + K + P + +L +KP V+ D GR+T+ + Sbjct: 30 VNGRVQRELGTQIDPDKDDIRVDGEQITPPTE-LHYVLLHKPSSVMTTLHDPEGRQTVAD 88 Query: 66 FIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEA 124 + ++ GRLD DSEGLL+LT++G L RLT P K Y + P+ + L Sbjct: 89 LVKSHNRLFPVGRLDYDSEGLLLLTDDGDLTFRLTHPSFEVEKEYQALLNQTPSVEQLRE 148 Query: 125 LRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMT 184 RNGV L+DG T PA EL++E A +W+++ ++EGRNRQ+RR+ Sbjct: 149 WRNGVELDDGKTAPAWIELLNETA---------------DGTWVRVVIHEGRNRQIRRVA 193 Query: 185 AHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +G RLIR G +L L G+WR +T Sbjct: 194 EALGLEVRRLIRLREGPLTLGELQAGQWRALT 225 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E... 256 4e-67 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 244 2e-63 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 243 5e-63 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 240 2e-62 UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E... 240 2e-62 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 238 1e-61 UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae ... 238 2e-61 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 237 2e-61 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 236 3e-61 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 236 5e-61 UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E... 236 6e-61 UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E... 235 8e-61 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 234 1e-60 UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E... 234 1e-60 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 234 1e-60 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 232 5e-60 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 232 7e-60 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 231 2e-59 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 230 2e-59 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 230 2e-59 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 229 3e-59 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 229 4e-59 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 229 4e-59 UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E... 229 5e-59 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 228 8e-59 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 228 8e-59 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 228 1e-58 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 228 1e-58 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 226 3e-58 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 226 4e-58 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 226 5e-58 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 225 6e-58 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 225 9e-58 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 225 1e-57 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 224 2e-57 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 223 3e-57 UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr06... 223 3e-57 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 223 3e-57 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 223 4e-57 UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandens... 223 4e-57 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 222 6e-57 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 221 9e-57 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 221 1e-56 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 220 2e-56 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 220 2e-56 UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testost... 220 3e-56 UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella dranco... 220 3e-56 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 220 3e-56 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 219 4e-56 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 219 6e-56 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 219 6e-56 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 218 8e-56 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 218 9e-56 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 218 1e-55 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 218 1e-55 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 218 1e-55 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 218 1e-55 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 217 2e-55 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 217 2e-55 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 217 2e-55 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 217 2e-55 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 217 2e-55 UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q... 217 3e-55 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 217 3e-55 UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q... 216 3e-55 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 216 3e-55 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 216 3e-55 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 216 4e-55 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 216 4e-55 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 216 4e-55 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 216 4e-55 UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp.... 215 6e-55 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 215 7e-55 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 215 8e-55 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 215 9e-55 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 215 9e-55 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 215 9e-55 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 215 1e-54 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 214 1e-54 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 214 1e-54 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 214 1e-54 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 214 1e-54 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 214 2e-54 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 214 2e-54 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 214 2e-54 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 214 2e-54 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 214 2e-54 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 214 2e-54 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 214 2e-54 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 214 2e-54 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 213 3e-54 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 213 3e-54 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 213 3e-54 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 213 4e-54 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 213 5e-54 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 212 6e-54 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 212 6e-54 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 212 7e-54 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 212 7e-54 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 211 9e-54 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 211 1e-53 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 211 1e-53 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 211 1e-53 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 211 1e-53 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 211 2e-53 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 211 2e-53 UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 211 2e-53 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 211 2e-53 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 211 2e-53 UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 210 2e-53 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 210 2e-53 UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepI... 210 3e-53 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 210 3e-53 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 209 4e-53 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 209 4e-53 UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumo... 209 4e-53 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 209 4e-53 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 209 5e-53 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 209 5e-53 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 209 6e-53 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 209 6e-53 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 209 7e-53 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 209 7e-53 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 209 8e-53 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 208 1e-52 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 208 1e-52 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 208 1e-52 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 208 1e-52 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 208 1e-52 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 207 1e-52 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 207 2e-52 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 207 2e-52 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 207 2e-52 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 207 2e-52 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 207 2e-52 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 207 2e-52 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 207 3e-52 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 207 3e-52 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 206 3e-52 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 206 4e-52 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 206 4e-52 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 206 5e-52 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 206 6e-52 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 205 8e-52 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 205 8e-52 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 205 9e-52 UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3... 205 9e-52 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 205 1e-51 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 205 1e-51 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 204 1e-51 UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1... 204 1e-51 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 204 1e-51 UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 204 1e-51 UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdello... 204 1e-51 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 204 2e-51 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 204 2e-51 UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria ... 204 2e-51 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 204 2e-51 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 203 3e-51 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 203 3e-51 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 203 3e-51 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 203 3e-51 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 203 3e-51 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 203 4e-51 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 202 4e-51 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 202 4e-51 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 202 5e-51 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 202 5e-51 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 202 6e-51 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 202 6e-51 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 202 6e-51 UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter Re... 202 6e-51 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 202 7e-51 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 202 8e-51 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 202 8e-51 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 202 9e-51 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 201 1e-50 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 201 1e-50 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 201 1e-50 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 201 2e-50 UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas Rep... 201 2e-50 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 201 2e-50 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 201 2e-50 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 201 2e-50 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 200 2e-50 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 200 2e-50 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 200 2e-50 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 200 3e-50 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 200 3e-50 UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales R... 200 4e-50 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 199 4e-50 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 199 4e-50 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 199 4e-50 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 199 4e-50 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 199 4e-50 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 199 5e-50 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 199 5e-50 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 199 5e-50 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 199 6e-50 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 199 7e-50 UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria Rep... 199 7e-50 UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 199 7e-50 UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter Re... 198 8e-50 UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID... 198 1e-49 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 198 1e-49 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 198 1e-49 UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 198 1e-49 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 198 1e-49 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 198 1e-49 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 197 2e-49 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 197 2e-49 UniRef50_C9RMB6 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 197 2e-49 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 197 3e-49 UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E... 197 3e-49 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 197 3e-49 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 196 3e-49 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 196 4e-49 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 196 5e-49 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 196 5e-49 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 196 5e-49 UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2... 196 6e-49 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 196 6e-49 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 196 6e-49 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 196 6e-49 UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=... 195 8e-49 UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis exc... 195 8e-49 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 195 8e-49 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 195 9e-49 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 195 1e-48 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 195 1e-48 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 194 1e-48 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 194 1e-48 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 194 1e-48 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 194 1e-48 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 194 1e-48 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 194 2e-48 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 194 2e-48 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 194 2e-48 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 194 2e-48 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 194 2e-48 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 194 2e-48 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 194 2e-48 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 194 2e-48 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 194 2e-48 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 193 3e-48 UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus... 193 4e-48 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 193 4e-48 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 192 5e-48 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 192 5e-48 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 192 5e-48 Sequences not found previously or not previously below threshold: >UniRef50_Q8ZPZ1 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Enterobacteriaceae RepID=RLUE_SALTY Length = 221 Score = 256 bits (654), Expect = 4e-67, Method: Composition-based stats. Identities = 179/215 (83%), Positives = 198/215 (92%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 MRQ I SENTMQKTSFRNH VKRFSS+++++ + ENQP RV+LFNKPYDVLPQFTDEAGR Sbjct: 1 MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLFNKPYDVLPQFTDEAGR 60 Query: 61 KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +TLK+FIPVQGVYAAGRLDRDSEGLLVLTN+GALQARLTQPGKRTGKIYYVQVEGIP Sbjct: 61 RTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPGKRTGKIYYVQVEGIPDNA 120 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL+ALR GVTLNDGPTLPAG E+V EP WLWPR PPIRERK+IPTSWLK+TLYEGRNRQV Sbjct: 121 ALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRERKNIPTSWLKVTLYEGRNRQV 180 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RRMTAHVG PTLRLIRY+MGDY+L+ L NG+WRE+ Sbjct: 181 RRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREI 215 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 101/217 (46%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + K + + + +L +KP + D GR+ Sbjct: 28 RVTVNGQVVTELGSKADPAK--DLIALDGQPVKPAETFYYVLLHKPAGYVTSLKDPQGRQ 85 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + E + + ++ GRLD +SEGLL+LTN+GA RL P + K Y+V+V G Sbjct: 86 LVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANRLMHPRHQVDKEYHVRVRGKIDP 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 ++ L +GV L DGPT L+ + WL +T+ EGRNRQ Sbjct: 146 QQIKKLADGVELEDGPTGATTVRLL---------------KNDQSNDWLSVTIREGRNRQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM A VG +RL R G+ +L L GE+R ++ Sbjct: 191 VRRMCAAVGLFVVRLRRIRYGNLTLGGLQPGEYRLLS 227 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 243 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 69/218 (31%), Positives = 109/218 (50%), Gaps = 20/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + I+ + +++ + + + + QP ++ NKP +V+ D GR Sbjct: 28 RVTINGSVVKELGTKVDPAR--DHVKVDGKHLRAAQPYVYLILNKPKNVMSTLDDPEGRP 85 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+K+ + V+ GRLD DSEGL++LTN+G L L P K Y ++V+G+ Sbjct: 86 TVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDLAQALLHPRYHVPKTYLIKVKGVLDD 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 +EAL GV L DG T PA + V ++ SWL++T++EGR Q Sbjct: 146 AKIEALERGVKLEDGFTAPAKVKKVS---------------RAESNSWLEVTIHEGRKHQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 V+RM VG ++L+R MG L +LA E+R +TD Sbjct: 191 VKRMVEAVGHSVIKLVRVRMGPLLLGDLAPREYRFLTD 228 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 70/217 (32%), Positives = 102/217 (47%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + I+ +++ R + R + + KP V+ D GR+ Sbjct: 31 RVRINGTVVREQGVRVDGAR--DVIEVDGRILKRREAPLYYALYKPRGVVTTCKDPQGRQ 88 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + + VY GRLDRD+EGLL+LTN+G L RLT P K Y ++ G + Sbjct: 89 TVIGLLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAFRLTHPRFGVEKTYRARLRGDVSA 148 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 AL+AL GV L DG T PA L+ R+ +W++I ++EGR RQ Sbjct: 149 GALKALAEGVQLEDGVTAPAQVRLL---------------RREGDATWIEIKIHEGRKRQ 193 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +RRM +G P + L R A G +L L GE R +T Sbjct: 194 IRRMGDAIGHPVIDLERIAFGPITLGKLKPGEVRPLT 230 >UniRef50_Q9F855 Ribosomal large subunit pseudouridine synthase E n=107 Tax=Bacteria RepID=RLUE_VIBCH Length = 241 Score = 240 bits (614), Expect = 2e-62, Method: Composition-based stats. Identities = 127/186 (68%), Positives = 150/186 (80%), Gaps = 1/186 (0%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTN 90 +R +VILFNKPYD L QFTD GRKTL ++IP++ VYAAGRLDRDSEGLL+LTN Sbjct: 56 KRPLSPAERKVILFNKPYDTLSQFTDGDGRKTLADYIPIKDVYAAGRLDRDSEGLLILTN 115 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 +G LQARLTQP + K Y+VQVEG P + LEALR+GVTL DGPTLPA +++ EP L Sbjct: 116 DGILQARLTQPQSKAPKTYWVQVEGSPQESDLEALRHGVTLKDGPTLPAKVDIMPEPT-L 174 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 WPRNPP+R R +IPT+WL ITL EGRNRQVRRMTAH+GFPTLRLIRY+MGD++L +L G Sbjct: 175 WPRNPPVRFRAAIPTTWLAITLMEGRNRQVRRMTAHIGFPTLRLIRYSMGDWNLGDLQPG 234 Query: 211 EWREVT 216 EWREVT Sbjct: 235 EWREVT 240 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 238 bits (607), Expect = 1e-61, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 22/233 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + I+ +KP + +D GR+ Sbjct: 36 RVTVNGKVVTELGSKV--DPLVDEVAVDGAVVRLADGPVTIMLHKPAGFVTTMSDPQGRR 93 Query: 62 TLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ E +P + ++ GRLD D+ GLL+ + +G L L P K Y VEG PT Sbjct: 94 TVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELGNGLLHPKHHVTKRYLACVEGRPT 153 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDE----------------PAWLWPRNPPIRERKS 162 + L LR G+ L+DGPT PA +V+ P + E ++ Sbjct: 154 ERDLALLRRGIELDDGPTQPADVRVVEGGAARHAERLLEIPAAVPPRSSKEYAAVCEGRA 213 Query: 163 IPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 S +++ + EGR RQV+RM A VG P L L R + G L +L G WR + Sbjct: 214 TRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRDSFGPLELGDLPRGAWRAL 266 >UniRef50_B3GZS7 Pseudouridine synthase n=10 Tax=Pasteurellaceae RepID=B3GZS7_ACTP7 Length = 232 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 109/210 (51%), Positives = 139/210 (66%), Gaps = 4/210 (1%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKPE----NQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI 67 QK R+ K R+ +R + + T V+LFNKP+DVL QFTDE GR+TLK+FI Sbjct: 9 QKNKPRSATNKPNLQNRTKKRPLKLQLSFEDTVVVLFNKPFDVLTQFTDEQGRQTLKDFI 68 Query: 68 PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRN 127 P+ +Y GRLDRDSEGLL+LTNNG +Q RL P K Y QVEGIP L L Sbjct: 69 PIPQIYPVGRLDRDSEGLLLLTNNGEIQHRLANPKFEKQKTYLAQVEGIPQAADLAKLEK 128 Query: 128 GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 GV L DG T PA A+ + P + W P IRERK+IPTSW+++ ++EG+NRQVRRMTAH+ Sbjct: 129 GVELKDGLTKPAKAKAISAPNYEWQTAPKIRERKTIPTSWIELKIHEGKNRQVRRMTAHI 188 Query: 188 GFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 GFPTLRLIR +G + L L +GE+R + + Sbjct: 189 GFPTLRLIRIGLGQFQLGELNSGEYRVLDE 218 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 21/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ V + + I+ NKP + D+ GR Sbjct: 29 RVAVNNVIIEN---MGATVTCNDVVTVDGKPVTTEEAKVYIMLNKPVGYVSTSKDQFGRP 85 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLD D+ GL++LTN+G RLT P K+Y + G P + Sbjct: 86 AVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGDFTYRLTHPKHEVNKVYEAVISGFPDK 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + + G+ ++D T PA E++++ + ++IT++EG+NRQ Sbjct: 146 NEITRFETGLKIDDYQTSPAEFEVLNKKGI---------------NTLVRITIHEGKNRQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VR+M +G L L R +G +L+NL G+WR ++D Sbjct: 191 VRKMCEAIGHKVLTLKRIQIGPIALENLPEGKWRHLSD 228 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 236 bits (604), Expect = 3e-61, Method: Composition-based stats. Identities = 75/217 (34%), Positives = 108/217 (49%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 Q ++ T+ + + K + + +L NKP + +DE RK Sbjct: 28 QVKVNGKTVTEMGLKVDPTK--DKIEVKGKPLPPLEKKVYLLMNKPRGYVTTLSDERDRK 85 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + + Q VY GRLD DSEGLL+LTN+G L LT P + K Y +V+GIP Sbjct: 86 TVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQALTHPKHKVKKTYLAKVDGIPET 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+A+ G+ L DGPT PA L + L+I+++EGRNRQ Sbjct: 146 EELKAMAKGLVLEDGPTAPADVRL---------------AGTGDNRALLEISIHEGRNRQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM H+G+ LRL R +G L +L +GE R +T Sbjct: 191 VRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALT 227 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 236 bits (602), Expect = 5e-61, Method: Composition-based stats. Identities = 74/215 (34%), Positives = 104/215 (48%), Gaps = 17/215 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ + + + + R +NQ ILFNKP V+ +D GR+ Sbjct: 28 RVEVNDKVVSTLGVKVNP--HQDVIKVDGRAIQNQEKIYILFNKPKGVITSVSDPEGRRV 85 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + +F+ + VY GRLD D+EGLL+LTN+G +T P K Y+ V+G+P Sbjct: 86 VGDFLKGIKERVYPVGRLDYDTEGLLILTNDGEFANMVTHPRHHVSKTYHATVKGVPHGS 145 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE LR GV L DG T PA E D S + IT+YEG+NRQV Sbjct: 146 VLEKLREGVKLEDGMTAPAEVEYHD-------------IDPDKKQSVISITIYEGKNRQV 192 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RRM VG+P RL R G L L G++R + Sbjct: 193 RRMFEAVGYPVTRLKRVKFGSIPLVGLPRGKFRRM 227 >UniRef50_Q9CKK7 Ribosomal large subunit pseudouridine synthase E n=61 Tax=Bacteria RepID=RLUE_PASMU Length = 241 Score = 236 bits (602), Expect = 6e-61, Method: Composition-based stats. Identities = 120/187 (64%), Positives = 142/187 (75%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTN 90 ++ T+VILFNKPYDVL QF+DE GR TLK FIP+ VY AGRLDRDSEGL++LTN Sbjct: 41 KKTVNFAETQVILFNKPYDVLTQFSDEEGRATLKAFIPIPHVYPAGRLDRDSEGLVLLTN 100 Query: 91 NGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWL 150 NG +Q RL P T K Y+ QVEGIP + L LR GV LNDG TLPA LV EP WL Sbjct: 101 NGEIQHRLAVPKFNTEKTYFAQVEGIPQETDLAQLRQGVVLNDGKTLPAKVRLVPEPNWL 160 Query: 151 WPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANG 210 W RNPPIRERK IPTSWL+I ++EGRNRQVRRMTAH+GFPTLRLIRY M ++L NL G Sbjct: 161 WQRNPPIRERKQIPTSWLEIKIHEGRNRQVRRMTAHIGFPTLRLIRYQMALFNLANLEQG 220 Query: 211 EWREVTD 217 ++R++++ Sbjct: 221 QYRQLSE 227 >UniRef50_Q1QUR9 Ribosomal large subunit pseudouridine synthase E n=26 Tax=Bacteria RepID=Q1QUR9_CHRSD Length = 257 Score = 235 bits (600), Expect = 8e-61, Method: Composition-based stats. Identities = 104/183 (56%), Positives = 129/183 (70%), Gaps = 1/183 (0%) Query: 34 PENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 P + + L +KPY +L QFTD GR TL E I V +Y AGRLD DSEGLL+LT +GA Sbjct: 55 PRPPMSSLYLLHKPYQMLSQFTDTRGRATLAEAIDVPDIYPAGRLDYDSEGLLLLTGDGA 114 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L R++ P + K Y+VQVEG P AL+ALR GVTL DGPT PA ++ P + PR Sbjct: 115 LAHRISHPRHKQPKTYWVQVEGEPEPAALQALRQGVTLRDGPTRPAKVRRLESPD-VAPR 173 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +PP+R R+++PT+WL++TL EGRNRQVRRMTAHVG PTLRLIR A+G + L LA GEWR Sbjct: 174 HPPVRHREAVPTAWLELTLSEGRNRQVRRMTAHVGHPTLRLIRVAIGSWHLAGLAPGEWR 233 Query: 214 EVT 216 T Sbjct: 234 RET 236 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 234 bits (599), Expect = 1e-60, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 7/221 (3%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + + + + ++ NKP L D GR T Sbjct: 34 RVTVNGQVVTELGSKVDPLVDVVAVDGVVCSIA-EKPVYLMLNKPAGYLTTMKDPQGRPT 92 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + +P G++ GRLD D+ GLL T +G + L P K K Y V G PT+ Sbjct: 93 IVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQMAQELLHPSKHVWKHYVAHVVGTPTE 152 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSI---PTSWLKITLYEGR 176 + L LR G+ L DGP PA E++ + + P K+ P + + +T+ EGR Sbjct: 153 EQLNRLREGIELEDGPAAPAEVEIISDDVKMKNLLAPQGLGKTGGGEPNALVSVTIREGR 212 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 QV++M + L L R G L + GEWR +T+ Sbjct: 213 KHQVKKMLLAIHHRVLALHRDTFGPLHLTRVKEGEWRLLTE 253 >UniRef50_Q9HX48 Ribosomal large subunit pseudouridine synthase E n=30 Tax=Proteobacteria RepID=RLUE_PSEAE Length = 189 Score = 234 bits (598), Expect = 1e-60, Method: Composition-based stats. Identities = 118/183 (64%), Positives = 139/183 (75%), Gaps = 1/183 (0%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNG 92 K +++LFNKP+DVL QF DE GR TLK+FIPV GVY AGRLDRDSEGLL+LTN+G Sbjct: 3 KAPPSEPKLLLFNKPFDVLTQFNDEQGRSTLKDFIPVPGVYPAGRLDRDSEGLLLLTNDG 62 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 LQAR+ P + K Y+VQVEG P ++ L LR GVTLNDGPTLPA A L+DEP LW Sbjct: 63 RLQARIADPRHKLPKTYWVQVEGTPDEEQLRRLREGVTLNDGPTLPAEARLLDEPT-LWE 121 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 R PP+R RKS+PT WL++ + EGRNRQVRRMTA VG PTLRL+R +G +SLD L GEW Sbjct: 122 RVPPVRFRKSVPTHWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGPWSLDGLGLGEW 181 Query: 213 REV 215 REV Sbjct: 182 REV 184 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 234 bits (598), Expect = 1e-60, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 23/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + + ++V+ + ++ + IL NKP D + D RKT Sbjct: 348 QISVNGKIVTE---MGYKVRPTDVVKYGKKALNPEKMVYILINKPKDYITTTDDPEERKT 404 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + I + VY GRLDR++ GLL+LTN+G L +LT P KIY +++ T Sbjct: 405 VLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAEKLTHPSSGIKKIYQAELDKPITT 464 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + E L+ GV L DG P LV A + + + ++ GRNR Sbjct: 465 EDFEQLKAGVELEDGFIRPDEVGLVTPDAQV-----------------VGLEIHSGRNRI 507 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRRM H+G+ +L R + +L G+WR +T+ Sbjct: 508 VRRMFEHLGYEVQKLDRTVFAGLNKKDLPRGKWRFLTE 545 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 232 bits (593), Expect = 5e-60, Method: Composition-based stats. Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ T+++ +V + E++ L KP V+ D+ GRK Sbjct: 27 RVTVNGKTVRELGV---KVSSSDRIEVNGVQLESEEPVYFLLYKPRGVISAVKDDKGRKV 83 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + +F + +Y GRLD D+ GLL+LTN+G +L P K Y +++GIP ++ Sbjct: 84 VTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFANKLMHPKYEINKTYVAKLKGIPLKE 143 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ L GV L DG T PA +L+ K TS ++IT++EGRNRQV Sbjct: 144 NLKKLERGVRLEDGKTAPAKVKLLS-------------LDKKKQTSIVQITIHEGRNRQV 190 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM +G L+L R +L L GE RE+T Sbjct: 191 RRMFEAIGHEVLKLKREEYAFLNLAGLKTGEKRELT 226 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 232 bits (592), Expect = 7e-60, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 20/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ T+ + +F +K + E +L +KP + D GR Sbjct: 26 KVKVNDKTITELAFT---LKPGDRVEFAGKIIEQTDKIYLLLHKPAGYISSLADPQGRPR 82 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + V+ GRLD D+EGLL+L+N+G +T P K Y V+G+ D Sbjct: 83 VIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFSNLMTHPRYLIPKKYEAWVQGLVKPD 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 + L GV L DG T PA L+ S L++ ++EG+ RQ+ Sbjct: 143 TIRQLEQGVALEDGITAPARVRLLSSKKGQ---------------SLLELEIHEGKKRQI 187 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +RM VG +L R A+ +L+ + G++R +T Sbjct: 188 KRMCLAVGHRVTKLKRTALAFLTLEGVPRGQFRFLT 223 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 16/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + + ++ E + V++ NKP L +D GR+T Sbjct: 27 RVSVDGEIVTQLGAKVDPSRQ--RIAVDGVPIELEQPVVLVLNKPVAYLSTVSDPLGRRT 84 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P + VY GRLD D+ GLL+ TN+G L RL P + K+Y V V GI ++ Sbjct: 85 VMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGELTQRLLHPSREIEKVYRVSVRGIVDRE 144 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL GV L DG T PA E++ + + + + + ++EGRNRQV Sbjct: 145 TRRALMEGVELEDGVTAPAKVEVLRQAD------------REDGVAVVHLAIHEGRNRQV 192 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM +G P LRL R A G SL +L GEWR +T Sbjct: 193 RRMFERLGLPVLRLKRIAFGPVSLGHLKTGEWRALT 228 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 104/218 (47%), Gaps = 14/218 (6%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + + +++ + + +K + +L NKP L D+ GR+ Sbjct: 30 RVRVDGQVVRELGTKVDPA--AHTILVDGKKIAGEEQHVYLLLNKPKGYLSTAKDDRGRR 87 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + VY GRLD ++EGLL++TN+GAL L P K Y+ V G T+ Sbjct: 88 TVLDLLPEVRERVYPVGRLDNNTEGLLLITNDGALMNGLLHPRFEVEKTYHAGVTGKLTE 147 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+ LR+G+ L DG T PA L+ E + + IT++EGRNRQ Sbjct: 148 EKLQMLRDGLLLEDGMTAPAKVSLLPEREPGE---------RVRGLTRAAITIHEGRNRQ 198 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRRM A VG L R +L +A G+ R +T+ Sbjct: 199 VRRMFAAVGCDVKSLKRVRFAGLTLKGVARGQHRALTE 236 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + +V K E + L KP V+ D+ GRK Sbjct: 27 KVKVNGKVVTELGV---KVTGSDQIEVNGLKVEREEPVYFLLYKPRGVISAAQDDKGRKV 83 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + +F Q +Y GRLD D+ GLL+LTN+G +L P K Y +V+GIP ++ Sbjct: 84 VTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKE 143 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L L G+ L +G T PA A+L+ K TS +++T++EGRNRQV Sbjct: 144 LLRKLERGIRLEEGKTAPAKAKLLS-------------LDKKKQTSIIQLTIHEGRNRQV 190 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM +G ++L R +L L G+ RE+T Sbjct: 191 RRMFEAIGHEVIKLKREEYAFLNLRGLHTGDARELT 226 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 229 bits (586), Expect = 3e-59, Method: Composition-based stats. Identities = 80/217 (36%), Positives = 109/217 (50%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRK 61 + ++ + R + QP R IL NKP VL DE GRK Sbjct: 30 RVSVNGRIVNTPGAM---ASPEDEIRVDGKLVRQQPKMRYILLNKPAGVLSTAKDERGRK 86 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + + VY GRLD+DSEGL++LTN+G L R+T P K Y V+VEG + Sbjct: 87 TVIDLLGQSNRVYPVGRLDKDSEGLMLLTNDGELAQRITHPRYGVHKQYMVEVEGYFSDR 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +L+ L GV L DG + P A+++ +S S L IT+ EGR RQV Sbjct: 147 SLQDLLQGVELEDGFSKPLDAKIIS---------------RSRDKSKLLITMGEGRKRQV 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR A +G+ RL R A+G SL NL GE+RE++D Sbjct: 192 RRTLAALGYKVKRLTRVALGPLSLGNLKPGEYRELSD 228 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 229 bits (586), Expect = 4e-59, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 21/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + P + NKP ++ D GR+ Sbjct: 75 RVAVNGIVITELGTKV--DPLVDEVCVDGAIVTWGAPAVTLALNKPAGIITTMKDLRGRR 132 Query: 62 TLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + +P G++ GRLD+D+ GLL+ + +G L L P K+Y +EG Sbjct: 133 CVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNLGNALLHPSHGVSKVYRATIEGSIG 192 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 Q ALE L +G+ L+DG T PA +V + S +++ L+EGR Sbjct: 193 QAALEQLASGILLDDGMTAPARVSVV---------------QAGKKHSVIELELHEGRKH 237 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 QV+RM VG P ++L R + G L LA G +R + Sbjct: 238 QVKRMCQAVGHPVVKLHRASFGPIDLAGLATGAYRRL 274 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 229 bits (586), Expect = 4e-59, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 95/217 (43%), Gaps = 19/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + R + I+ +KP V+ D GR Sbjct: 29 RVTVNGRVVTVPGTRV--DLEHDEVLVDGQPLRMPAKRTYIMLHKPAGVVSTAEDPHGRP 86 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + + V V+ GRLD DSEGL++LT++G L LT P K Y V ++ T D Sbjct: 87 TVVDLVDVPARVFPVGRLDLDSEGLILLTDDGELAYALTHPSFEVEKEYRVLLDRALTPD 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL + RNGV L T PA EL++ + W++I L EGR RQ+ Sbjct: 147 ALRSWRNGVLLEGEMTAPAWVELLE---------------TTPEGVWVRIVLREGRKRQI 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R + +G+ RL+R G L +L WR +TD Sbjct: 192 RAVAKLLGYEVRRLVRVREGPLQLGDLPPRAWRHLTD 228 >UniRef50_Q87QY8 Ribosomal large subunit pseudouridine synthase E n=244 Tax=Bacteria RepID=RLUE_VIBPA Length = 238 Score = 229 bits (585), Expect = 5e-59, Method: Composition-based stats. Identities = 115/183 (62%), Positives = 145/183 (79%), Gaps = 1/183 (0%) Query: 33 KPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNG 92 + + Q +VI+FNKPYD L QFTD GRKTL ++IPV+ VYAAGRLDRDSEGL+VLTN+G Sbjct: 55 RVDLQNRKVIIFNKPYDTLSQFTDGDGRKTLADYIPVKDVYAAGRLDRDSEGLMVLTNDG 114 Query: 93 ALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWP 152 LQA+LTQP ++ K Y+VQV+G P + LE LR GV L DG TLPA E++D P +W Sbjct: 115 ILQAKLTQPKSKSPKTYWVQVDGAPQEQDLEKLRKGVELKDGMTLPAKVEVIDAPT-IWE 173 Query: 153 RNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 RNPP+R R +IPT+WL IT+ EGRNRQVRRMTAH+GFPTLRL+RY+MGD +L +L G+W Sbjct: 174 RNPPVRFRANIPTTWLAITIIEGRNRQVRRMTAHIGFPTLRLVRYSMGDITLGDLQPGQW 233 Query: 213 REV 215 +E+ Sbjct: 234 KEI 236 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 228 bits (583), Expect = 8e-59, Method: Composition-based stats. Identities = 72/219 (32%), Positives = 96/219 (43%), Gaps = 21/219 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK--PENQPTRVILFNKPYDVLPQFTDEAGR 60 + ++ ++ +V R L +KP + TD GR Sbjct: 41 RVKVNGEVIR---TLGTKVVSTDRIVVDGRLLSIPQNDYAYYLLHKPTGYITSVTDPQGR 97 Query: 61 KTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 KT+ E +P + VY GRLD D+ GLL+LTN+G L RL P K Y V+V Sbjct: 98 KTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHRLMHPSYGVEKTYRVEVGEKIP 157 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + AL+ L GV L DG T PA V +IT++EGRNR Sbjct: 158 EQALKRLEKGVLLEDGKTAPARIREVSPKG-------------RGSLPTYEITIHEGRNR 204 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QVRRM VGFP L R G LD +LA G +R ++ Sbjct: 205 QVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLS 243 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 228 bits (583), Expect = 8e-59, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 22/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + + ++ R + + + +L NKP D + D RKT Sbjct: 345 QVTVNGEVINEL---GTKILRTDEVKFQDKLVSLEKKVYVLLNKPKDYVTTSDDPQQRKT 401 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLDR++ G+L+ TN+G L ++LT P K+Y+V ++ T Sbjct: 402 VMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLASKLTHPKFLKKKVYHVFLDKPITA 461 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+ + +G+ L DG E + + I ++ G+NR Sbjct: 462 NELQKISDGIELEDGEIKADAIEYANPEDQA----------------QVGIEIHSGKNRI 505 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRR+ +G+ ++L R + N+ G+WR +T+ Sbjct: 506 VRRIFESLGYRVVKLDRVMFAGLTKKNVRRGDWRFLTE 543 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 101/218 (46%), Gaps = 22/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + ++ R ++ E + +L NKP + + D R T Sbjct: 229 EITVNGEVVTEL---GRRITRQDEVIYKDKRVEIESKVYVLLNKPKNCVTTSDDPECRTT 285 Query: 63 LKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLDR++ G+L++TN+G L ++LT P + KIY+V + + Sbjct: 286 VMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLASKLTHPSFKKKKIYHVWLNKDVSI 345 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + ++ + +GV L+DG V E S + I ++ GRNR Sbjct: 346 EDMQKIADGVELDDGEIHADAISYVKED----------------DLSQVGIEIHSGRNRI 389 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 VRR+ H+G+ ++L R + NL G+WR + + Sbjct: 390 VRRLFEHLGYRVVKLDRVYFAGLTKKNLPRGKWRYLNE 427 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 228 bits (581), Expect = 1e-58, Method: Composition-based stats. Identities = 62/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q ++ + K + LF KP + D K Sbjct: 49 KQITVNGEIVTKPETKV--APENDQISYKGEPVTYCEYEYYLFYKPAGCVTATED-QLHK 105 Query: 62 TLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ +++ ++ GRLD D+EGLL++TN+GAL L P K K YY ++G+ T Sbjct: 106 TVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAHDLLSPAKHVEKTYYAVIDGVVT 165 Query: 119 QDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 + + + NGV + + T P ++ KS P S +++T+ EGR Sbjct: 166 EKDVNSFENGVDIGEEKLTKPGKLRIL----------------KSEPESEIELTITEGRF 209 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 QV+RM VG L L R +MG L D+L GE+R +T+ Sbjct: 210 HQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTE 250 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 226 bits (578), Expect = 3e-58, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 19/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + + K ++ ++ + +KP +V+ D GR T Sbjct: 28 RVRVNGRVVTELGLKADRQK--DRIEVDGKRLVSEAPVYVALHKPRNVVSTLRDPEGRPT 85 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLD + G+L++TN+G L P K Y ++V+G+ + D Sbjct: 86 VADHVRGTGARLYPVGRLDFATSGILLMTNDGDFANALLHPRGGVPKTYVLKVQGVMSDD 145 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L R G+ L DG TLPA A L+ R +WL++TL EGRN+Q+ Sbjct: 146 DLTPWREGIRLEDGVTLPAEARLL---------------RHEGDKTWLEVTLREGRNQQI 190 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM G+P +RL R S + L GEWR +T Sbjct: 191 RRMGEATGWPVMRLARTTFAGVSSEGLRPGEWRALT 226 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 226 bits (577), Expect = 4e-58, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 23/215 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + ++VK + + + + +L NKP D + D RKT+ Sbjct: 431 ISVNGKIVTE---MGYKVKEGDTVKYGTKVLNPERFVYVLLNKPKDYITTTEDPEERKTV 487 Query: 64 KEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 E + +Y GRLDR++ GLL++TN+G L +LT P KIY V+++ T + Sbjct: 488 MELVADAGKFRMYPVGRLDRNTTGLLLITNDGELADKLTHPSNNIRKIYQVELDKPITDE 547 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 EA++ G+ L DGP P +V A++ + I ++ GRNR V Sbjct: 548 HFEAIKKGIELEDGPIKPDAISIVTPDAYV-----------------VGIEIHSGRNRIV 590 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RR+ G+ +L R + L G+WR + Sbjct: 591 RRIFESFGYEVTKLDRTTYAGLTKKELPRGKWRFL 625 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 226 bits (576), Expect = 5e-58, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 95/223 (42%), Gaps = 11/223 (4%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ + ++ ++ +L NKP VL +D G Sbjct: 50 RVCVNGKQVRVLGTKVMP--QYDHVTVDGKEYVLGNDHVYLLLNKPSQVLTTMSDPFGFP 107 Query: 62 TLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + +P G++ GRLD D+ G+L+ T NG + RL P K Y +EG T Sbjct: 108 CVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMGNRLLHPSHHVWKTYVALIEGKLT 167 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE----RKSIPTSWLKITLYE 174 ++ L G+ L DG T P + + + R + +S ++ ++E Sbjct: 168 SSQMQKLSQGIMLEDGMTSPCFIRTITQDEPCTHLDKNHSLFDDMRLNAASSLCELKIHE 227 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 GRN QV+RM +G P ++L R+ G L+ + G WR T Sbjct: 228 GRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIPLGSWRMCT 270 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 225 bits (575), Expect = 6e-58, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 21/217 (9%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + + VK R + + +L NKP D + D R+T+ Sbjct: 263 VSVNGEVVSELGHKIDPVK--DQVRYNGELLKREKKIYVLLNKPKDYITTTDDPQERRTV 320 Query: 64 KEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLDR++ GLL++TN+G L +L+ P KIY+V++ +Q Sbjct: 321 MQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLADKLSHPKNGITKIYHVELSRSLSQG 380 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L ++ G+ L DG P V + I ++ G+NR V Sbjct: 381 DLNKIQFGLELEDGIIKPDSVSYVT----------------GGSKREVGIQIHSGKNRIV 424 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ H+G+ ++L R G+ + +L G WR + + Sbjct: 425 RRIFEHLGYDVVKLDRVVYGNLTKKDLPRGRWRYLEE 461 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 225 bits (574), Expect = 9e-58, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + +VK+ + + +F KP + DE R Sbjct: 27 KVEVNGKVVTEL---GTKVKQGDLITVEGKPLVGENKVYYVFYKPKGCVCTLDDEFDRPI 83 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++ + +Y GRLD D+ GL++++N+G + P KIY V ++G+ T Sbjct: 84 ITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFANMIMHPRSHLEKIYEVSIKGLITGP 143 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L L GV L TLP ++VD+ T+ LKI L EG+NRQV Sbjct: 144 TLNKLEKGVYLEGVKTLPCKIKVVDKDT-------------EHKTTMLKIKLVEGKNRQV 190 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ++M VG P RL R ++G +L L G +R + Sbjct: 191 KKMFESVGHPVKRLHRVSIGGINLKGLTPGRYRIL 225 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 94/216 (43%), Gaps = 22/216 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ M ++VK R + ++ IL NKP + DE GRKT+ Sbjct: 180 VTVNGEVMT---TLGYRVKPTDEVRFDGKLLSSEKKEYILLNKPKGFITTTNDEKGRKTV 236 Query: 64 KEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + GRLDR + GLL+LTN+G L +LT P KIY+V ++ Sbjct: 237 MDLVANATNVRILPVGRLDRATTGLLLLTNDGELTKKLTHPTHGVRKIYHVILDRKLDYK 296 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +++G+ L DG V++ P + + I ++ GRNR V Sbjct: 297 DFMKVQDGLELEDGLIEVDEISYVND----------------KPKNEIGIKIHSGRNRIV 340 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RR+ H+G+ +L R + +L G WR +T Sbjct: 341 RRIFEHLGYQVEKLDRVVFAGLTKKDLPRGHWRRLT 376 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 88/215 (40%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + +V + + + + LF KP + +DE R Sbjct: 28 KVTVNGEVVT---VLGTKVTKKDTICVNGKLINKEDKVYYLFYKPEKCVCTMSDEHDRTC 84 Query: 63 LKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++ + VY GRLD D+ G L +TN+G + P K+Y V V+G+ T+ Sbjct: 85 VADYFADSNERVYPVGRLDYDTTGALFMTNDGEFANLIMHPSSHLEKVYEVSVKGLLTKA 144 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L G+ L TLP + + T+ L I L EG+NRQ+ Sbjct: 145 EKNQLEKGIYLEGVKTLPCEIAITGND-------------EEHGTTMLLIRLVEGKNRQI 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ++M VG P RL R +G L L G +R + Sbjct: 192 KKMFEEVGHPVKRLRRIMIGPIDLKGLTPGTYRRL 226 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + V R + + +L NKP + + +D R T Sbjct: 250 VSVNGEIVTQL---GKHVTREDFISVDGKPVSIEKKIYVLLNKPRNCVTTSSDPEKRLTA 306 Query: 64 KEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLDR++ GLL+LTN+G L A+L P KIY V ++ + + Sbjct: 307 IDLVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAAKLMHPKYEKKKIYQVTLDKPVSVE 366 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ + +G+ L DG VDE + + I ++ GRNR V Sbjct: 367 HMQQIASGIELEDGEIHADAISYVDEN----------------NLAIVGIEIHSGRNRIV 410 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ H+G+ +L R + +L G WR +T+ Sbjct: 411 RRIFKHLGYRVYKLDRVYFAGLTKKDLPRGRWRYLTE 447 >UniRef50_P72581 Uncharacterized RNA pseudouridine synthase slr0612 n=16 Tax=Bacteria RepID=Y612_SYNY3 Length = 261 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 103/205 (50%), Positives = 127/205 (61%), Gaps = 20/205 (9%) Query: 31 RRKPENQPTRVILFNKPYDVLPQFTDE--AGRKTLKEFIPVQGVYAAGRLDRDSEGLLVL 88 N+ + I+F KPY VL QFTD R TLK++I + +Y GRLD+DSEGLL+L Sbjct: 31 GLIALNKTPQTIVFYKPYGVLCQFTDNSAHPRPTLKDYINLPDLYPVGRLDQDSEGLLLL 90 Query: 89 TNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPA 148 T+NG LQ RL + Y+ QVEG PT + LE LR G+T D PT PA A+++ EP Sbjct: 91 TSNGKLQHRLAHREFAHQRTYFAQVEGSPTDEDLEPLRRGITFADYPTRPAIAKIITEPD 150 Query: 149 WLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM---GD---- 201 PRNPPIR R SIPTSWL ITL EGRNRQVRRMTA VGFPTLRL+R + G Sbjct: 151 -FPPRNPPIRYRASIPTSWLSITLTEGRNRQVRRMTAAVGFPTLRLVRVQIQVTGRSPQQ 209 Query: 202 ----------YSLDNLANGEWREVT 216 +L+ L+ G+WR +T Sbjct: 210 GKGKSAATWCLTLEGLSPGQWRPLT 234 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 223 bits (569), Expect = 3e-57, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQF-TDEAGRK 61 + ++ ++ + + + + Q R I+ NKP L Q GRK Sbjct: 29 RVKVNGEVVRSLGVKVNP--EVDIVEVDGKPVKPQRKRYIILNKPCCYLTQLGRSPDGRK 86 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T++E I + V+ GRLD ++EGLL+LTN+G L R+ P + K+Y VEG Q Sbjct: 87 TIEELIKDIPERVFPVGRLDYNTEGLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQ 146 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ ++ G+ L DG P +V R + L+IT +EGR Sbjct: 147 KTLKRMKQGIELEDGFAKPDNIRIV---------------RYEGKNTLLEITFHEGRKHL 191 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 V+R G RL R A+G L L+ G+WRE+ Sbjct: 192 VKRFLGAFGHKVKRLKRIAIGPIKLGKLSPGKWRELN 228 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 64/214 (29%), Positives = 100/214 (46%), Gaps = 18/214 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + + ++ + + NKP VL D AGR Sbjct: 42 RVEVDGKFVTELGMKV--DPEHQEILVDGQRLKFGKRVYYMLNKPPGVLSTNFDPAGRTR 99 Query: 63 LKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + +P ++ GRLDR SEGL+V+TN+G L RL P K Y V+V G P DA Sbjct: 100 VIDMVPQDVRLFTIGRLDRASEGLIVVTNDGELANRLAHPRYEIEKTYRVEVAGHPEPDA 159 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + +R GV L +G P + +RK+ ++ L++ L EG+NR++R Sbjct: 160 ITFVRRGVHLAEGFVQPVSV---------------VMKRKNKQSTTLEVILDEGKNREIR 204 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R+ A +G LRL R AMG L + G +RE+ Sbjct: 205 RLMAKIGHKVLRLKRIAMGPLRLGEMPEGAFREL 238 >UniRef50_A4BDP6 Pseudouridine synthase n=1 Tax=Reinekea blandensis MED297 RepID=A4BDP6_9GAMM Length = 228 Score = 223 bits (568), Expect = 4e-57, Method: Composition-based stats. Identities = 105/176 (59%), Positives = 133/176 (75%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 R +LFNKP+ VL QFTD R+TL +FI V VY+AGRLD DSEGLL+LT++GAL + Sbjct: 3 RYLLFNKPFQVLTQFTDPDNRQTLADFIDVPEVYSAGRLDYDSEGLLLLTDDGALIHSMM 62 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P +T K Y QVEG T +A+ L +G+ L DGPTLPA A V EPAWLWPR PPIRE Sbjct: 63 NPRFKTPKTYLAQVEGDITDEAIRRLESGLQLKDGPTLPAKARRVSEPAWLWPRQPPIRE 122 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R +IP SW+++TL EGRNRQVRRMTA VGFPTLRLIR A+ + ++++L+ G+++EV Sbjct: 123 RATIPASWVELTLVEGRNRQVRRMTAAVGFPTLRLIRVALAELTVESLSVGQYKEV 178 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 222 bits (567), Expect = 6e-57, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 18/215 (8%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + VK N+ L NKP V+ +D+ GR+T+ Sbjct: 53 VTLNGQVVTDLATT---VKSGDLVEIEGSPIYNEEKVYYLLNKPRGVISSVSDDKGRQTV 109 Query: 64 KEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + +P + +Y GRLD D+ GLL+LTN+G ++ P K+Y +V+G+ T+++ Sbjct: 110 IDLLPQVKERIYPVGRLDWDTSGLLILTNDGDFTDKMIHPRNEIDKVYLARVKGVVTKES 169 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L L GV ++ T PA ++ R S +++T++EGR+ QV+ Sbjct: 170 LRPLTRGVVIDGKKTKPARYRII-------------RVEPDKNRSIVELTIHEGRHHQVK 216 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 +M VG +L R G + L GE R ++ Sbjct: 217 KMFEAVGHLVDKLSRTQFGSLDVRGLKPGEARRLS 251 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 221 bits (565), Expect = 9e-57, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + + + + + + I+ NKP D + D GRK Sbjct: 26 RVTVNGQVITRLGTKINP--DTDTVKVDGEPITQEESNVYIMLNKPKDYITSKDDPQGRK 83 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + I + VY GRLD DS GL++LTN+G L RL P K Y V+V+ +P QD Sbjct: 84 TVMDLIQVKERVYPVGRLDYDSRGLVLLTNDGELANRLMHPKYNIPKTYMVKVDKLPLQD 143 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ L NG+ L +G E++D + LKI L EGR RQ+ Sbjct: 144 KLDNLVNGIYLEEGLCKADHVEILDT-----------------KNNILKIILSEGRKRQI 186 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM A +G L R ++G +L +L+ G +R++T Sbjct: 187 RRMLASLGIEVKDLKRDSLGTLTLKDLSEGNYRKLT 222 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 100/217 (46%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ T+ + ++V+ R R + + +L NKP + + DE GR+T+ Sbjct: 96 VTVNGKTITE---MGYKVQPTDEVRFDGRLLQRERKEYVLLNKPRNFITTTRDEKGRRTV 152 Query: 64 KEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 E I + GRLDR++ GLL+ TN+G L +LT P KIY+V+++ Sbjct: 153 MELISRASNARLVPVGRLDRNTTGLLLFTNDGELAKKLTHPKHGVRKIYHVELDKTFKSA 212 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L LR G+ L DG A +D + + + L+ GRNR V Sbjct: 213 DLGKLREGLELEDGRIEVDEASYIDGASKKE----------------VGVELHSGRNRIV 256 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ H+G+ ++L R + + +L G WR +T+ Sbjct: 257 RRIFEHLGYQVVKLDRVVLAGLTKKDLPRGHWRHLTE 293 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 70/222 (31%), Positives = 107/222 (48%), Gaps = 25/222 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q +++ + E + ++ NKP DVL D + K Sbjct: 31 KQVMVNGELAMDPGLHIFPQR--DHIEVQGEVIEYREYIYLMLNKPQDVLSATEDASD-K 87 Query: 62 TLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + + + GRLD+D+EGLL+LTNNG L +L P K K YY V+G+ Sbjct: 88 VVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLAHQLLSPKKHVPKTYYALVQGLV 147 Query: 118 TQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T++ + A GV L+DG TLP +++ +S P S +++T+YEG+ Sbjct: 148 TEEDVAAFARGVELDDGYRTLPGQLKII----------------RSAPQSEIELTIYEGK 191 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM VG + L R +MG LD NL GE+RE+TD Sbjct: 192 YHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTD 233 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 220 bits (562), Expect = 2e-56, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 +++ + + ++ R + + + I+ NKP + + D R T+ Sbjct: 286 VKVNDVVVTEL---GTKITRQDVVTFNEKPVQIESKVYIVLNKPKNCVTTSDDPQERLTV 342 Query: 64 KEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLDR++ G+L+LTN+G L ++LT P + KIY+V ++ + Sbjct: 343 MDLVKNACQERIYPVGRLDRNTTGVLLLTNDGDLASKLTHPSFKKKKIYHVWLDKNVAIE 402 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +E + NG+ L DG E S + I ++ GRNR V Sbjct: 403 DMEKIANGLELEDGEIHADAISYASED----------------DKSQVGIEIHSGRNRIV 446 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ +G+ +L R + NL G+WR + + Sbjct: 447 RRIFESLGYHVTKLDRVYFAGLTKKNLGRGKWRYLNE 483 >UniRef50_D0IWI1 Pseudouridine synthase n=2 Tax=Comamonas testosteroni RepID=D0IWI1_COMTE Length = 223 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 103/185 (55%), Positives = 132/185 (71%) Query: 28 RSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLV 87 + P TR++ F+KPY VL QFT E + LK++I V GVY AGRLD DSEGLL+ Sbjct: 30 VVRQPAPRPGVTRLLCFHKPYGVLSQFTPEGKWQGLKDWIDVPGVYVAGRLDADSEGLLL 89 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEP 147 LTN+G LQAR+ P + K Y+VQVEGIP + AL+ LR GV L+DG TLPA A L++ Sbjct: 90 LTNDGQLQARIADPRHKMEKTYWVQVEGIPDEAALQRLREGVELSDGKTLPAKARLIEPQ 149 Query: 148 AWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNL 207 +WPRNPPIR R++IP W+++ + EGRNRQVRRMTA VG PTLRL+R A+G YS++ L Sbjct: 150 PLMWPRNPPIRVRQNIPDCWIELIIREGRNRQVRRMTAAVGHPTLRLVRMAVGPYSIEGL 209 Query: 208 ANGEW 212 G+W Sbjct: 210 EPGQW 214 >UniRef50_C6MZI4 Pseudouridine synthase n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MZI4_9GAMM Length = 240 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 102/173 (58%), Positives = 126/173 (72%), Gaps = 1/173 (0%) Query: 41 VILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +ILFNKP+ V+ QFT E TL EFI YAAGRLD++SEGLL+LTN+GALQ +LT Sbjct: 55 LILFNKPFAVVCQFTGEKHEHTLAEFIDKPDFYAAGRLDKNSEGLLLLTNDGALQHQLTH 114 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P K Y+VQVEGIPT LE L+ G+ L D LPA ++EPA LWPR PP+R R Sbjct: 115 PKFNKKKYYWVQVEGIPTAADLEPLKKGLVLKDITFLPAEVRCIEEPA-LWPRTPPVRFR 173 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 +SIPTSWL+I L EG+N QVRRMTA +GFPTLRL+R+ +GD+ L +L GE+R Sbjct: 174 QSIPTSWLEIILREGKNHQVRRMTAAMGFPTLRLVRHRIGDWQLGDLQPGEFR 226 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 104/218 (47%), Gaps = 23/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRF-SSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGR 60 + ++ + + + + + +P F KP V+ D GR Sbjct: 28 RVTVNGQI----AVIGQKADPEKDYIKVDGKLLIKPEPKVYYAFYKPRKVITALLDPQGR 83 Query: 61 KTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+++FI +Y GRLD DSEGLL+LTN+G L ++ P + K Y V+V+GI Sbjct: 84 PTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELAYKVMHPSSQIEKTYMVKVDGIVE 143 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + +E LR G+ + +P LV +K SW+KITL+EGR R Sbjct: 144 PETIEKLRKGIKIEGKLAVPVSVHLV---------------KKLKANSWIKITLHEGRKR 188 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 Q+R+M VG P +RLIR A+ L +L G+ R +T Sbjct: 189 QIRKMLERVGHPVIRLIRIAIDGVKLGDLKPGQLRPLT 226 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 219 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 55/217 (25%), Positives = 93/217 (42%), Gaps = 22/217 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + S QV + + +L NKP + + TD GR+T Sbjct: 231 RVKVNGAVV---SELGSQVLPTDQVMVDDKPVTLEAKVYVLLNKPKNCVTTLTDPEGRRT 287 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + +Y GRLDR++ G+L+LTN+G L RL P R KIY V ++ T Sbjct: 288 VMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDLAVRLMHPAFRKKKIYEVALDKEVTV 347 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + ++ + +G L DG + + I ++ GRNR Sbjct: 348 EHMQMIAHGFELEDGEIHADAISYIT----------------GQTHDKVGIEIHSGRNRI 391 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ H+G+ + L R + +L G WR +T Sbjct: 392 VRRIFEHLGYRVVHLDRVYYAGLTKKDLPRGRWRYLT 428 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + I+ +++ + VK + N+ L NKP V+ +D+ GRKT Sbjct: 26 KVSINGQVVRELATN---VKSGDRVEVEGQPIYNEEKVYYLLNKPRGVISSVSDDKGRKT 82 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + E +P + +Y GRLD D+ G+L+LTN+G + P K+Y +V+G+ ++ Sbjct: 83 VVELLPQVKERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKE 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L L G+ + T PA E++ + + S +++T++EGRN QV Sbjct: 143 VLRPLTRGIEIEGRKTKPAVYEII-------------KVDPAKNRSVVQLTIHEGRNHQV 189 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++M VG +L R G L L GE+R+++ Sbjct: 190 KKMFQAVGLQVDKLSRTRFGHLDLTGLKPGEYRKLS 225 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 219 bits (558), Expect = 6e-56, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 18/220 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + F+ R + + + R + NKP + +D GR Sbjct: 49 RVQVNGQVVTEMGFKADAAS--DHIRVDGKLLQGPEKLRYFMLNKPKGYVTTVSDPEGRH 106 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ EF + +Y GRLD SEGLL++TN+GAL LT+ K+Y V+V G Sbjct: 107 TVMEFFHGRGKGGERLYPVGRLDYASEGLLLMTNDGALANTLTKASSHVEKVYLVKVSGR 166 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 PT++ LE +R G+ ++ G P ++ PA +R + W ++TL EGR Sbjct: 167 PTEEQLEQIRAGIMIDRG--RPGEGRVMTAPAG-------VRMVRDAENPWFELTLIEGR 217 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 NR++R+M G ++ R G L ++ GE RE+ Sbjct: 218 NREIRKMFEETGHFVEKIRRIGYGPLVL-DVEPGEVRELN 256 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 218 bits (557), Expect = 8e-56, Method: Composition-based stats. Identities = 65/225 (28%), Positives = 97/225 (43%), Gaps = 25/225 (11%) Query: 1 MRQFIISENTMQK--TSFRNHQVKRFSSQRSTR----RKPENQPTRVILFNKPYDVLPQF 54 M II + ++ R RK + +P RVI+++KP + Sbjct: 214 MEDLIIQGRVSVNGLPAHIGQRIGPTDQVRINGKPVHRKIQTKPPRVIMYHKPAGEIVSQ 273 Query: 55 TDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 +D GR T+ + +P A GRLD ++EGLL+ T +G L RL P + Y V Sbjct: 274 SDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSGELANRLMHPRYGVEREYAV 333 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 ++ G +Q+ L++G+TL+DG + W + Sbjct: 334 RILGDLSQENTALLKSGITLDDGQAKFLRLAM---------------GGGEGANRWYHVA 378 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 L EGRNR+VRRM VG RLIR G + L L G+W E+ Sbjct: 379 LSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEI 423 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 218 bits (557), Expect = 9e-56, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 30/222 (13%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + + ++ +F ++ Q R + NKP + D Sbjct: 26 RVTVDGEIVRNAAF---KLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDP-DHP 81 Query: 62 TLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ F+ ++AAGRLD D+ GL+++T++G R+T P K Y V +E Sbjct: 82 TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVA 141 Query: 119 QDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 D E GV L++ T PA E++ + +++T+ EGR Sbjct: 142 DDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------------------TQVRLTISEGR 182 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM A VG + L R +G +LD +LA GE+R +T+ Sbjct: 183 YHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTE 224 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + +++ R R ++ + R I+ NKP + +DE GR+T Sbjct: 27 RVTVDGQVVRELGVRV--DPERQEIRVDGKRLRPERRRYIMLNKPPGYITTVSDERGRRT 84 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + + + V AGRLDR + GLL+LTN+G L R+T P K Y V V+G P + Sbjct: 85 VMDLVQVPERVVPAGRLDRPTAGLLLLTNDGDLLFRITHPRYELEKEYEVLVDGHPPPEV 144 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L+ LR GVT++ +P + R + L+I ++EGRNR VR Sbjct: 145 LDQLRRGVTVDGERVVPDQVRPL---------------RIEEAGTVLRIVIHEGRNRIVR 189 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM VG+P L+L R +G + + G WR++T Sbjct: 190 RMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLT 224 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 218 bits (556), Expect = 1e-55, Method: Composition-based stats. Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 24/217 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + ++VK S + + + + +L NKP D + DE RKT+ Sbjct: 355 VKVNGIVVTEL---GYKVKPGDSVKYNNKVLNPEKSVYVLLNKPKDFITTMEDENDRKTV 411 Query: 64 KEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLDR++ GLL+ TN+G L +LT P + KIY V+++ T + Sbjct: 412 MQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQKLTHPSNKVKKIYEVELDKPITAE 471 Query: 121 ALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + + +G + L DGP A ++ + + I ++EGRNR Sbjct: 472 DFDKIVDGKIHLFDGPVKVDEAAIISPSKKI-----------------IGIEIHEGRNRI 514 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ +G+ L+L R + N+ G WR +T Sbjct: 515 VRRIFESLGYDVLKLDRVMYAGLTKKNIPRGSWRYLT 551 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 218 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 13/224 (5%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + R + + + +L +KP + +D GR+T Sbjct: 29 RVTVNGEVKNELGSK--ADPETDDIRVDGKPLKAEQLVYVLLHKPKGYVTTVSDPEGRET 86 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + +Y GRLD SEGLL+LTN+G + A+LT K Y V+V G PT++ Sbjct: 87 VMDLVKGIPARLYPVGRLDYLSEGLLLLTNDGEMAAKLTHASTHVPKKYLVKVSGEPTEE 146 Query: 121 ALEALRNGVTL--NDGPTLPAGAE------LVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 ++ LRNGV L G E + I + W ++TL Sbjct: 147 QIQELRNGVQLPPEQGHIHADPREGGRFGGEKRRSTAVKTAPCKIELTREGDNPWYEVTL 206 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 EGRNRQ+RRM +G ++ R G L ++ NGE+R + Sbjct: 207 NEGRNRQIRRMFDFIGHHVEKIKRVEYGPLKL-DVENGEFRLLN 249 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 218 bits (555), Expect = 1e-55, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + T+ S + + ++ NKP ++ D GR T Sbjct: 95 RVAVDGRTVSDASAWV--DLSTARISVDGLVIAAEAKIYLMLNKPRGLVTTRQDPEGRPT 152 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + GRLD+ SEGLL+ TN+ L P K Y+VQ++ + Sbjct: 153 VYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTEFAQTLLDPLTHVTKTYHVQIDRLMDD 212 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + + A+ +G+ + A + R+ SW+++ L EGRNRQ Sbjct: 213 EEIAAMTSGIRHDGELLTAAATRRL---------------RQGDRNSWIEVELDEGRNRQ 257 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RRM +G LRL+R A+G L L G R +T+ Sbjct: 258 IRRMLEALGAECLRLVRVAIGGLELGELPKGAVRALTE 295 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 65/229 (28%), Positives = 107/229 (46%), Gaps = 18/229 (7%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ +K + K + NKP V+ D+ R T+ Sbjct: 29 VSVNGEIAKKAERKV--DTEKDEIIFKGEKIFYAGYEYFMLNKPAGVVSATEDKKER-TV 85 Query: 64 KEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + I + ++ AGRLD+D+EGLL++TN+G L RL P K KIYY +++GI T++ Sbjct: 86 IDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAHRLLSPKKHVDKIYYAKIKGIVTEE 145 Query: 121 ALEALRNGVTLND-GPTLPAGAELVD----------EPAWLWPRNPPIRERKSIPTSWLK 169 + GV + D PT+PA E++ + + P + K S + Sbjct: 146 DVRLFEKGVHIGDEKPTMPAALEILSVQKERRKEKIKEQKILPETKNETDEKEDGYSEIY 205 Query: 170 ITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 +T+ EGR QV+RM VG + L R G +LD +L G++R++T+ Sbjct: 206 LTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTLDPSLKPGQYRKLTE 254 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 97/217 (44%), Gaps = 23/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + +V +F +K + +L NKP D + D RKT+ Sbjct: 228 VSVNGKVVTEL---GLKVSKFDRVVYQGKKINPEKPVYVLLNKPKDFITTTDDPLERKTV 284 Query: 64 KEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + ++ GRLDR++ GLL+ TN+G L A+L+ P + KIY V ++ T + Sbjct: 285 MALVGNACEERIFPVGRLDRNTTGLLLFTNDGELAAKLSHPSNQIKKIYQVTLDKPLTHN 344 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 + + G+TL DG +++ S+ L + ++ G+NR V Sbjct: 345 DEKDILEGLTLEDGEVEVDDMQVL-----------------SVDRKILGLEIHVGKNRIV 387 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ AH+G+ L R +L G +R +++ Sbjct: 388 RRIFAHLGYEVTALDRVMYAGLDKKDLKRGNYRFLSE 424 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 16/219 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + F+ + R + + Q L NKP V+ D KT Sbjct: 112 RVTVAGEIQRDGRFQVDKNSR--QVAFDGQILDYQEYYYYLLNKPQGVVSATKDNV-FKT 168 Query: 63 LKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + + + ++ GRLD+++EGLL+LTN+GAL LTQP K K Y+ +++G T Sbjct: 169 VVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALGHDLTQPKKHVEKEYFARIDGKVT 228 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + + G+TL +G P L+ + +S S +++ ++EG+ Sbjct: 229 DEIINKFAEGLTLKNGEKA--------RPGELFVEKTYKGDSQSGWVSEIRVIIHEGKFH 280 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM V L L R MG+ +LD +LA G +R +T Sbjct: 281 QVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLT 319 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 217 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 99/217 (45%), Gaps = 23/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + QV + + +R + + +L NKP D + D RKT+ Sbjct: 185 ISVNGKVITE---MGFQVSPTDTVKYGKRLLKREKFVYVLLNKPKDFITTTNDPQDRKTV 241 Query: 64 KEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + I + +Y GRLDR++ GLL+ TN+G + +L+ P K+Y V+++ + Sbjct: 242 MDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEVAKKLSHPSHDVKKVYQVELDKPLKDE 301 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+++ GV L DG +++ + + + ++ GRNR V Sbjct: 302 DLDSIAEGVILEDGYAAVDEIAILNPER-----------------TLVGVEIHIGRNRIV 344 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ H+ + ++L R + N+ G+WR +++ Sbjct: 345 RRIFNHLDYEVVKLDRTMYAGLNKKNIDRGDWRYLSE 381 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 217 bits (553), Expect = 2e-55, Method: Composition-based stats. Identities = 65/217 (29%), Positives = 105/217 (48%), Gaps = 19/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRK 61 + +++ ++ R R R ++ +KP V+ D GR Sbjct: 29 RVMVNGKVVRIPGTRV--DPEHDEILVDGRPIGKIHHRTYVMLHKPAGVVSTTDDPQGRP 86 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + + Q ++ GRLD DSEGLL+LT++G L +LT P + K Y V + P+ Sbjct: 87 TVIDLVNLEQRLFPVGRLDYDSEGLLLLTDDGELTQKLTHPSYQVEKEYRVLLNEAPSPA 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 AL A R GV L+ T PA EL++ ++ +W+++ L+EGR RQ+ Sbjct: 147 ALRAWRTGVELDGVKTAPAWVELIE---------------RTPDGAWVRVILHEGRKRQI 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R + +G+ RLIR G +L +L +G WR +TD Sbjct: 192 REVARVLGYEVRRLIRVREGPLTLGDLPSGTWRFLTD 228 >UniRef50_Q1GHH2 Pseudouridine synthase n=12 Tax=Bacteria RepID=Q1GHH2_SILST Length = 221 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 112/180 (62%), Positives = 142/180 (78%), Gaps = 4/180 (2%) Query: 40 RVILFNKPYDVLPQFTD----EAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQ 95 R+I FNKP+DVLPQFTD + R TL +++ GVY AGRLDRDSEGL++LT+NG LQ Sbjct: 3 RLIRFNKPFDVLPQFTDRGSEGSPRATLSDYVDCPGVYPAGRLDRDSEGLMLLTDNGRLQ 62 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 A ++ P + K Y+VQVEGIPT+DAL+ALR GV L DG T PA AEL+ EPA LW R P Sbjct: 63 AWISDPKHKLEKTYWVQVEGIPTEDALKALRQGVDLKDGMTRPAKAELISEPAQLWARTP 122 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 PIRERKS+PT+WL++ + EG+NRQVRRMTA +G+PTLRLIRYA+G ++LD LA G+W ++ Sbjct: 123 PIRERKSVPTAWLELKISEGKNRQVRRMTAAMGYPTLRLIRYAIGAWTLDGLAQGKWDDL 182 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 110/217 (50%), Gaps = 19/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + + + +F + QP R L NKP L D AGR+ Sbjct: 48 RVSVDGDVITELGAKIDPETQF--IEVDGERVRLQPRRYYLLNKPSGFLCTNNDPAGRRR 105 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + P Q ++ GRLD +SEGL+++TN+G L RL P R + Y+VQV G P ++ Sbjct: 106 VVDLFPNDGQRLFTVGRLDENSEGLILVTNDGELAQRLAHPRYRVARTYHVQVVGNPPRE 165 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ LR GV +G +G + + +K +++L++TL+EG+NR++ Sbjct: 166 KLDELRKGVRFKEGVFRVSGLKYL---------------KKQGKSAFLELTLHEGQNREI 210 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RRM A +G ++L+R G +L L GE R ++D Sbjct: 211 RRMMARIGHKVIQLVRIRFGPLNLGKLKTGESRRLSD 247 >UniRef50_Q2JQ37 Pseudouridine synthase n=10 Tax=Bacteria RepID=Q2JQ37_SYNJB Length = 226 Score = 216 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 101/178 (56%), Positives = 128/178 (71%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 R + F KPY VL QFTD GR TL+ FIPV VY GRLDRDSEGLL+LT++G L ARL Sbjct: 29 RYLKFYKPYGVLTQFTDREGRPTLQSFIPVPRVYPVGRLDRDSEGLLLLTDDGRLNARLI 88 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P +IY+VQVEGIPT AL+ L+ G+ + T PA +++ E L PR+PPIR Sbjct: 89 DPKFGHERIYWVQVEGIPTPQALQQLQQGLIIQGRKTRPAQVKVLAEEPTLPPRDPPIRF 148 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+SIPT+WL++TL EGRNRQVRRMTA VG PTLRL+R +G SL LA G+W+++++ Sbjct: 149 RRSIPTTWLELTLREGRNRQVRRMTAAVGIPTLRLVRVGLGPLSLAGLAPGQWQDLSE 206 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 216 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 72/220 (32%), Positives = 103/220 (46%), Gaps = 22/220 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR--VILFNKPYDVLPQFTDEAGR 60 + I+ + + +V + + Q +R I+ +KP ++ +D GR Sbjct: 95 RVSINGEVVTELGV---KVAKRDRVAVDGQLVTPQRSRDTAIILHKPKSIICTRSDPQGR 151 Query: 61 KTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 +T+ + I + GRLD +SEGL++LT++G L L P + ++Y V+ GI Sbjct: 152 RTIFDLIENHGSSRLITVGRLDINSEGLIILTSDGQLAHGLMHPSREVPRVYRVKTHGIL 211 Query: 118 TQDALEALRN-GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 LE +R GV L DGPT P L R R+ SW ITL EGR Sbjct: 212 LASQLEQIRTVGVRLEDGPTGPLEIVL-------------DRGREQGNNSWYTITLREGR 258 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 NR+VRR+ H G RL+R G SL NL G WR VT Sbjct: 259 NREVRRIFDHFGLQVARLLRVGYGGISLGNLEPGAWRPVT 298 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 216 bits (552), Expect = 3e-55, Method: Composition-based stats. Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ N + + ++V+ R + + IL NKP + + D+ GRKT+ Sbjct: 98 VEVNGNLVTE---MGYKVQPDDVVRFDGTGITPEQKKYILLNKPKNYITTMDDDRGRKTV 154 Query: 64 KEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + I + +Y GRLDR++ GLL+ TN+G L +LT P K+Y+ ++ Sbjct: 155 MDLISNATKERIYPVGRLDRNTTGLLLFTNDGELAKKLTHPKHDVRKLYHASLDKKLELK 214 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE LR V + VD P S + I ++ GRNR V Sbjct: 215 DLEKLRGEVLIEGKKVFIDAVSYVD----------------GQPKSEVGIEIHSGRNRIV 258 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R++ H+G+ +L R + + NL G WRE+T+ Sbjct: 259 RKIFEHLGYKVSKLDRVIFAELTKRNLPRGRWRELTN 295 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 56/219 (25%), Positives = 93/219 (42%), Gaps = 23/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ +++ +QV + Q L NKP V+ TD KT Sbjct: 26 RVRVADKVIKEAK---YQVTPETVVYVDDEPIRYQTNFYWLLNKPAGVISATTDPQ--KT 80 Query: 63 LKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + + ++ GRLD+D+ GLL++TN+G L L P K K Y ++ G+ T Sbjct: 81 VMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDLAHDLLSPKKHVAKTYRAKIAGVVT 140 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 G+ L D PA ++ S +++ ++EG+ Sbjct: 141 AADQAQFAAGLKLRDFDAQPAQLTILRTDTARQE-------------SLIEVEIHEGKFH 187 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM VG L L R MG SL +L G++R +T Sbjct: 188 QVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALT 226 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 98/227 (43%), Gaps = 25/227 (11%) Query: 1 MRQFIISENTMQ--KTSFRNHQVKRFSSQRSTRR----KPENQPTRVILFNKPYDVLPQF 54 M Q I+ + + +++ + + + + + P RVI ++KP + Sbjct: 114 MEQLILEGRISVNAEPAHIGQRIQFGDTVKVNGKPIRVRIDPPPPRVIAYHKPSGEVVTH 173 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D R T+ +P + GRLD ++EGLL+LT++G L +L P + Y V Sbjct: 174 DDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSGELANKLMHPRFGLEREYAV 233 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 +V G + + + L GVTL+DG + E W ++T Sbjct: 234 RVLGALSNEEKKRLLEGVTLDDGVAQFSSIE---------------AGGGEGANCWYRVT 278 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 + EGRNR+VRRM VG RLIR G L L G + E+ + Sbjct: 279 ISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDE 325 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 216 bits (552), Expect = 4e-55, Method: Composition-based stats. Identities = 61/219 (27%), Positives = 99/219 (45%), Gaps = 19/219 (8%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 M + I ++ R ++ K + R LF+KP VL +D AGR Sbjct: 60 MGRVTIDGVVAKELGVRVDLSRQ--KVAVDGEKLRVEEKRYFLFHKPAGVLCTNSDPAGR 117 Query: 61 KTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + P ++ GRLD +EGLL++TN+G L RLT P +IY V G P+ Sbjct: 118 TRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDGDLAERLTHPKFGIPRIYRAVVAGNPS 177 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 +A+ L G+ +G + V + + L+IT+ EG+NR Sbjct: 178 TEAINQLLEGLYFAEGRFRMSSVNRV---------------KSQGSATVLEITMREGQNR 222 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++RR+ A VG ++L R G L +L G R++++ Sbjct: 223 EIRRLLARVGHKVMKLKRTHFGPIKLGDLERGAHRKLSE 261 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 216 bits (551), Expect = 4e-55, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 92/217 (42%), Gaps = 17/217 (7%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ ++ + S +V + L NKP L D+ R Sbjct: 26 KRIKVNGKII---SELGTKVSSSDIITLDDKPITKATYSYFLLNKPNGFLSTAKDKKNRP 82 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + I Q +Y GRLD ++ GLL++TN+G L +LT P K Y+V++ Sbjct: 83 TVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLTQKLTHPSFCIPKEYHVKINACLQ 142 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L G+ ++ + P++WLK+ + EG+NR Sbjct: 143 KKDLSTFCKGIIIDKKYLAVCK-----------EIDILKISYMPKPSTWLKLVITEGKNR 191 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 QVR+M +G+ L+L RY +++NL G +R + Sbjct: 192 QVRKMMQALGYQVLKLKRYRYSFLTIENLTIGAYRPL 228 >UniRef50_B1XK09 Pseudouridine synthase n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XK09_SYNP2 Length = 223 Score = 215 bits (549), Expect = 6e-55, Method: Composition-based stats. Identities = 95/187 (50%), Positives = 122/187 (65%), Gaps = 8/187 (4%) Query: 38 PTRVILFNKPYDVLPQFTD----EAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGA 93 +L +KPY+VL QFTD + R+TLK+F+PV +Y+ GRLD DSEGLL+LTN+ Sbjct: 2 QHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAP 61 Query: 94 LQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 L+ L +P + Y+VQVE IP ALE LR GV + T PA A L+ + R Sbjct: 62 LKHYLCEPKFAHSRTYWVQVENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAR 121 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG----DYSLDNLAN 209 PPIR RK++PT+WL++TL EGRNRQVRRMTA VG PTLRL+R A+G +L L Sbjct: 122 EPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTLRLMRVAIGAGPAKLTLTGLGP 181 Query: 210 GEWREVT 216 GEWR +T Sbjct: 182 GEWRHLT 188 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 215 bits (549), Expect = 7e-55, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 98/217 (45%), Gaps = 21/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRF-SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + H V + + IL KP L + D GR Sbjct: 39 KVRVNGKVVLNPD---HWVDPDHDKVTLEGKPLKAATKSYILLYKPKGYLTTYRDPEGRP 95 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + + + GRLD D+ GLLVLTN+ R+T P + K Y ++ + + Sbjct: 96 TVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAERITNPEHKVPKTYQIKAATVLSD 155 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + +E LR GV L+DGPT PA + + R ++L++T+ EGRNRQ Sbjct: 156 EQIERLRAGVELSDGPTRPAEVKRL---------------RDGPKHTFLEMTITEGRNRQ 200 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM V +L+R A+G + L G+WR +T Sbjct: 201 VRRMLEAVESKVSKLVRTAIGPVRIGELPIGKWRNLT 237 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 215 bits (548), Expect = 8e-55, Method: Composition-based stats. Identities = 66/215 (30%), Positives = 102/215 (47%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + +++ + + ++P R I+ +KP + DE GRKT Sbjct: 33 RVTVDGVVVRELGRKV--DPERQEICVDGKPLHSEPRRYIVLHKPVGYITTTADEYGRKT 90 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + + + V GRLDRDS GLL+LTN+G L R+T P K Y V V+G P + Sbjct: 91 VLDLVQVPERVVPVGRLDRDSSGLLLLTNDGDLIYRITHPRYELEKEYEVLVDGFPPPEV 150 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 EALR GV ++ P E + R + ++ ++EGRNR +R Sbjct: 151 EEALRRGVPVDGRPVRIRRLEAI---------------RVEPQGTVYRVVIHEGRNRIIR 195 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R+ VG+P LRL R +G L +L G WR++T Sbjct: 196 RVFERVGYPVLRLQRVRVGPLRLGDLPPGRWRDLT 230 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 215 bits (548), Expect = 9e-55, Method: Composition-based stats. Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 16/217 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ K + R RK + +P +L KP + D GR+ Sbjct: 31 RVTVNGRSVTKLGAK--ADPDLDDIRVDGRKVKTGRPRIYLLVCKPRGYVTTRFDPEGRR 88 Query: 62 TLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ I VY GRLD DSEGL++LTN+G L ARLT P ++Y V+V G+P+Q Sbjct: 89 TILNLISNVREYVYPVGRLDYDSEGLVILTNDGTLAARLTHPRYGVERVYEVRVRGVPSQ 148 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 A+++LR+GV +N T + + + + KS + L++ + EGRNRQ Sbjct: 149 AAIDSLRHGVLINGRRTASSSVKFLRR-----------LKAKSSENALLRVAIREGRNRQ 197 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VR+M +G P +RL R +G +L G+ R +T Sbjct: 198 VRKMCEAIGHPVIRLRRTQIGPLRDSSLKVGKHRLLT 234 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 215 bits (548), Expect = 9e-55, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + +++ R K+ +R P + NKP V+ +D GR + Sbjct: 409 RVTVDGQVVRRFGARVDPAKQVIHV-DGKRLPTMPDLVYLAINKPIGVVSTMSDPDGRPS 467 Query: 63 LKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 L +F+ + ++ GRLD ++EGL++LTN+G L RLT P K Y+ +V G +D Sbjct: 468 LADFVADRTERLFHVGRLDTETEGLILLTNDGELANRLTHPSYGVQKKYWAKVPGRIERD 527 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ G+ L DG LV E + +++ L+EGR V Sbjct: 528 LGRRLKKGIELEDGIAKADSFTLVQE---------------HGQQALVEVVLHEGRKHIV 572 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM VG P + L R G L L G R +T Sbjct: 573 RRMLEEVGHPVIDLARIEFGPVKLGRLKPGTVRALT 608 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 215 bits (548), Expect = 9e-55, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 93/218 (42%), Gaps = 21/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + + + + R + + I NKP + D GR+ Sbjct: 29 RVTVNGSVITELGSKADLDR--DHIKVDGRLLKAPKHQIYIALNKPKGTVTTVHDPEGRE 86 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + + + VY GRLD SEGLL+LTN+G L + K Y V+V G T Sbjct: 87 TVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANSIMSAATHLEKTYVVKVTGTLTA 146 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + E R GV L+ TLPAG +L+ W ++ L EGRN Q Sbjct: 147 EQEEKFRTGVPLSGRRTLPAGLKLLSRAE----------------NPWYEVKLTEGRNNQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +R M H G +L R +G L L G +R + + Sbjct: 191 IRMMFRHFGKLVEKLKRVRIGPIELGTLKTGAFRYLDE 228 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 24/217 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ T+ + +++ + + + ILF KP + D +T Sbjct: 26 RVTVNDRTVLDPA---YKLSDKDVVKVDGKVIDLPEKVYILFYKPAGYVTSTRDPHS-ET 81 Query: 63 LKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + EF+P +G++ GRLD+D+EGLL++TN+G R+ P + K Y V+VEG T+D Sbjct: 82 IMEFLPDIKGIFPVGRLDKDAEGLLLVTNDGEFAHRVISPRWKVEKEYVVKVEGEITEDK 141 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 LE LR GV+L DG A + I +KI + EG+ QV+ Sbjct: 142 LEKLRRGVSLRDGFFAKAK------------------HVEKISNDTVKIVITEGKYHQVK 183 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 RM A VG T+ L R +G L + GE+R +++ Sbjct: 184 RMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSE 220 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 24/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q I+ K + R + Q LFNKP + D T Sbjct: 37 QIAINGTVAAKPETKV--DTDADEVSVNGRIVKYQRYEYYLFNKPSGCVSATCDNV-HDT 93 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + ++I ++ GRLD D+EGLL++TN+GAL L P K K YY +++G T Sbjct: 94 VMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSHELLSPSKHVAKTYYARIDGEVTL 153 Query: 120 DALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 D + + G+ + + PT PA + +KS S +++T+ EG+ Sbjct: 154 DDIIRFKEGIDIGEEKPTKPAELVI----------------KKSGSVSEIELTITEGKFH 197 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 QV+RM +G + L R +MG L D+L G +R +T Sbjct: 198 QVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALT 236 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 102/218 (46%), Gaps = 21/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQR-STRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ K + ++ + Q + + NKP L D AGR Sbjct: 27 RVKVNG---VKVTELGLKIDPSAHQIAVDDQPVRAEKLVYWAVNKPVGHLCTNHDPAGRP 83 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +P Q VY GRLD S+GLL++TN+G L LT P K+Y+V V G PT Sbjct: 84 RAVDLLPHVEQRVYTVGRLDEGSDGLLLMTNDGDLAQGLTHPRYGVPKMYFVLVAGRPTD 143 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 D L+ L +GV L+DG A+ + + +W+++ L EG+NR+ Sbjct: 144 DDLQKLMDGVWLSDGKVRAKSAKRI---------------KAQGNGTWVRVVLTEGKNRE 188 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RRM A G +RL R A+G LD L G+ R ++D Sbjct: 189 IRRMLAKFGHKVMRLKRVAIGPVKLDKLPKGKARRISD 226 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 57/202 (28%), Positives = 91/202 (45%), Gaps = 20/202 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV---QGVYA 74 +V+ + + E + ++ NKP + D KT+ E + + +Y Sbjct: 254 GTKVQPTDEVKFNDSRVEGEKKVYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYP 313 Query: 75 AGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDG 134 GRLD++S GLL+ TN+G L +LT P + KIY V ++ T+ +E + G+TL DG Sbjct: 314 VGRLDKNSVGLLLFTNDGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDG 373 Query: 135 PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRL 194 V E + + I ++ GRNR VRR+ H+G+ +L Sbjct: 374 EIYADEIAYVKE-----------------DKTEVGIEIHSGRNRIVRRIFEHLGYAVKKL 416 Query: 195 IRYAMGDYSLDNLANGEWREVT 216 R S NL G+WR +T Sbjct: 417 DRVYYAGLSKKNLKRGQWRFLT 438 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 30/222 (13%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGR 60 ++ I ++ + ++ R + R + NKP + D Sbjct: 25 KRVTIDGEVVKSGAI---KLTPEQDVRFDGNPLQQMVGPRYFMLNKPQGYVCSTEDP-DH 80 Query: 61 KTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ F+ ++AAGRLD D+ GL+++T++G R+T P K Y V +E Sbjct: 81 PTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHRVTSPRHHCEKTYLVTLEHPL 140 Query: 118 TQDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 + D + +GV L + T PA ++++ +++T+ EG Sbjct: 141 SDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQR-------------------VRLTISEG 181 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 R QV+RM A VG + L R +GD +L D+LA GE+R +T Sbjct: 182 RYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLT 223 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 98/216 (45%), Gaps = 22/216 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + H V ILF+KP + D Sbjct: 26 RVTVNGRVVLDP---GHSVSENDVVVLDGETVNFHRKVYILFHKPSGYVTSTKDPHSETI 82 Query: 63 LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 ++ P++G++ GRLD+D+EGLL++T++G R+ P K Y V+VEG T+D + Sbjct: 83 MEFLPPLKGIFPVGRLDKDAEGLLIITSDGDFAHRVISPKWSVEKEYIVKVEGEVTEDKI 142 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 E L+NGVTL DG A + + LKI + EG+ Q++R Sbjct: 143 EKLKNGVTLRDGFFAKAK------------------CVEKLSNDTLKIVITEGKYHQIKR 184 Query: 183 MTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 MT VG T+ L R +G L +++ GE+R +++ Sbjct: 185 MTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSE 220 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRV-ILFNKPYDVLPQFTDEAGRK 61 + + + + + ++ +L NKP + D GR Sbjct: 28 RVQVDGRPVAQMGLTI--DPERQQVTFDGQPVLPPSRKLTVLLNKPAGYVTTMADPQGRP 85 Query: 62 TLKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + I P ++ GRLD D+EG L+LTN+G L + P ++ + Y+ V+G P + Sbjct: 86 IVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGELAQNILHPSRQINRTYHATVKGRPNR 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 +AL+ LR G+ L T PA + R++ ++ L++ ++EGR RQ Sbjct: 146 EALQQLRRGIMLEGRRTWPARIREL---------------RRNQESTTLEVIIHEGRKRQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VR+M A + P L+L R A G L +L G +R ++ Sbjct: 191 VRKMFAAINHPVLQLKRVAYGGLRLGSLPTGRYRRLS 227 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 97/220 (44%), Gaps = 21/220 (9%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++++ + ++ K + + + NKP L D + Sbjct: 27 KAILVNQEVETSPKVQINEHK--DVVTYLGKPLTYEAFVYYILNKPAGFLSATKD-RAQA 83 Query: 62 TLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + + + V+ GRLD+D+ GLL+LTNNG L L P K K Y +V GI Sbjct: 84 TVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLAHDLLSPKKHVTKEYLAKVAGIM 143 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T + G++L D LPA E++D+ T + IT+ EG+ Sbjct: 144 TDADKDDFAKGISLKDHQCLPAKLEVLDKDLSQE-------------TCVVSITIQEGKF 190 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM A G L L R +MG LD LA G++R +T Sbjct: 191 HQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLT 230 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 19/219 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + R + + + + +K V+ +D GR T Sbjct: 34 RVTVNGAVVTEAGLRIDPARDALAVDGAPVNLAPEIPITLALHKKPGVVTTASDPEGRPT 93 Query: 63 LKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + +P + ++ GRLD SEGLL+LT +G L RLT P K Y V V G T Sbjct: 94 VFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGELALRLTHPRWHVPKRYRVTVRGQVT 153 Query: 119 QDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 D L + G+ L P A +V+ PA S L++ L++G N Sbjct: 154 PDMLGTMARGMRLAEGERLAPVAARVVEGPAQ--------------DRSILEMELHQGVN 199 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RQ+RRM +G LRL R + G +L +L G RE+T Sbjct: 200 RQIRRMCRDLGLTVLRLARVSQGPVALGDLPLGACRELT 238 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ T+ + V + +P R+ L+ KP ++ +DE GR+ Sbjct: 33 RIAVNGRTIDSPALN---VGPKDRITVDGQPLAPPEPARLWLYYKPEGLVTSASDEKGRE 89 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V + GRLD +SEGLL+LTN+G L+ RL P + Y V+V+G PT Sbjct: 90 TVFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDGELKRRLELPSTGWLRKYRVRVKGNPTD 149 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 LE LR G+T+ P L +R +WL + L EG+NR+ Sbjct: 150 ADLEPLRKGITVEGESFQPMTVSL---------------DRVQGANAWLTVGLREGKNRE 194 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +RR + +G RLIR + G + L+ L G EV Sbjct: 195 IRRAMSALGLTVNRLIRVSYGPFRLNELEPGMVEEV 230 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 63/221 (28%), Positives = 97/221 (43%), Gaps = 25/221 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRK 61 + ++ + + +F +V RK Q IL NKP + D GRK Sbjct: 305 KVTVNGELITEPAF---KVTAKDEVAINNRKINIQKNLVYILLNKPKGYITTTDDPEGRK 361 Query: 62 TLKEFI-----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ E I Q VY GRLDR++ GLL+LTN+G L +L P KIY+V + Sbjct: 362 TVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGELAQKLAHPKHNIKKIYHVGLNKP 421 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T+ E + GVTL DG V ++ + + I ++ G+ Sbjct: 422 LTKAHFENILQGVTLEDGVANVDALGYV----------------EAGDKTQVGIEIHSGK 465 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 NR VRR+ H+ + +L R + N+ G+WR +T+ Sbjct: 466 NRIVRRIFEHLEYEVEKLDRVTYAGLTKKNINRGKWRFLTE 506 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + T+ + R Q + NKP ++ D GR Sbjct: 50 RVDVDGETITELGTTV--DPDLQKVRVDGNYLRPQKLVYYVVNKPVGIVTTNRDPRGRPR 107 Query: 63 LKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + +P + V+ GRLD SEGL++LTN+G L +L P K+Y V V G + Sbjct: 108 VIDLVPPTERVFPVGRLDISSEGLILLTNDGDLAQKLAHPKFGIQKVYRVVVAGEVRGET 167 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 ++ +R G+ + +G GA+++ + + ++I L EG+NR++R Sbjct: 168 MKKMREGIYIAEGLVQVDGAKII---------------KARTKATEMEIRLKEGKNREIR 212 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R+ A G +L R A+G L ++ G +R++T Sbjct: 213 RILARFGHKVQQLRRVAIGPLKLGDVPRGAYRKLT 247 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 23/218 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE---NQPTRVILFNKPYDVLPQFTDEAG 59 + ++ NT + + + +K + N+ + NKP +VL +D+ G Sbjct: 26 RITVNGNT----ATTGMDINENDNIFIDGKKIKTSINEEKVYFMLNKPLEVLSSSSDDRG 81 Query: 60 RKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 RKT+ + I + ++ GRLD + GL++LTN+G L R+ P K YY+++ G Sbjct: 82 RKTVVDLIKTDKRIFPIGRLDYMTSGLILLTNDGELFNRVVHPKSEIYKKYYIKILGELK 141 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ ++ L+ GV L+DG TLPA + + + + I++ EGRNR Sbjct: 142 KEEIDELKKGVLLDDGKTLPAKISGI---------------KYDKNKTSMFISIREGRNR 186 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 Q+RRM + L L R +G+ +L +L G++RE+T Sbjct: 187 QIRRMIEKFEYKVLMLRREKIGELALGDLPEGKYRELT 224 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 103/221 (46%), Gaps = 19/221 (8%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 +++ ++S N S + + + ++ R L NKP + D Sbjct: 22 IKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYSKYRYFLLNKPAGCVSATKDNV-H 80 Query: 61 KTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 +T+ + + + ++ GRLD D+EGLL++TN+G L L P K YY ++G Sbjct: 81 QTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRLAHHLLSPAHHIAKTYYADIDGYV 140 Query: 118 TQDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 + + G+ + +D PTLPA ++++ +S +S +++T+ EGR Sbjct: 141 DDQTISLFKQGIDIGDDTPTLPASLKIIEAD-------------RSTGSSRIELTITEGR 187 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 QV+RM V L R +MG+ + D+L G +RE+T Sbjct: 188 FHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELT 228 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 98/221 (44%), Gaps = 21/221 (9%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + I++ K + + Q L NKP +L D + Sbjct: 25 KIVTINDQVCSKGGTQVTPGS--DCVAVGGQLVPYQRYHYYLLNKPEGILSATED-RHHQ 81 Query: 62 TLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ +++ ++ GRLD D+ GLL+LTNNG L +L P K+ K Y + G+ Sbjct: 82 TVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQLAHQLLSPKKKVDKTYTATIRGLV 141 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 Q + A G+ L D +LPA ++ + TS +++ + EG+ Sbjct: 142 DQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQ-------------GTSQIQVIIQEGKF 188 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM VG L L R AMG L+ +LA+G+WR +T+ Sbjct: 189 HQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTE 229 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 213 bits (543), Expect = 3e-54, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ T+ + R + T P ++ + L KP V+ +D GR T Sbjct: 29 RVAVNNKTVTELGSRVEPGTDLVTVDGTLVTPPDESS-YFLLYKPVGVVTTLSDPQGRPT 87 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++ + ++ GRLD D+EG L+ T++GAL +LT P + + Y +V+G P Sbjct: 88 VANYVEETGKRLFPVGRLDYDAEGALLFTDDGALAHKLTHPSFQVPRTYLAKVKGAPDTA 147 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ LR GV L DG P + + +WLKI + EGR + Sbjct: 148 TLDKLRGGVRLEDGMATPVSVSV---------------FEAAERNTWLKIVVAEGRPHLI 192 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +R+ A VG P +RL R + ++ L GE R + Sbjct: 193 KRLCAAVGHPVVRLFRPSYAGVGVEGLRPGELRPL 227 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 102/216 (47%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V+ + PE +PTRV ++KP ++ DE GR Sbjct: 56 RVSVNGRVLDTPAVT---VRPGDRIVVDGQPVPEPEPTRVWRYHKPDGLVTTARDEKGRP 112 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + V + GRLD SEGLL+LTN+GAL L P + Y V+V G P + Sbjct: 113 TVFDNLPPELPRVVSVGRLDLTSEGLLLLTNDGALARHLELPVTGWLRRYRVRVHGAPDE 172 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L G+ + P + +R +WL ++L EGRNR+ Sbjct: 173 AQIAKLAQGIIIEGIEYGPIE---------------TVVDRSVGANTWLTVSLREGRNRE 217 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VRR+ H+G P RLIR A G + L L G+ EV Sbjct: 218 VRRVMEHLGLPVSRLIRVAYGPFQLGKLEPGQVEEV 253 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 213 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN--QPTRVILFNKPYDVLPQFTDEAGRK 61 I+ + +V +K E + + NKP +VL D+ GRK Sbjct: 30 IKINGE----KATPGIKVSDKDEIYIRGKKIEKHTEKKVYYILNKPLEVLSSSKDDRGRK 85 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + I + ++ GRLD ++ GL++LTN+G L R+ P K YYV+V G ++ Sbjct: 86 TVVDLINCKERIFPIGRLDYNTSGLIILTNDGELFNRIIHPKAEIFKEYYVKVLGEIKEN 145 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +E L+NGV L+DG TLPA ++ R+ + L + + EGRNRQV Sbjct: 146 NVELLKNGVELDDGITLPANVRIL---------------RREKGKTELLVAIREGRNRQV 190 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RRM + P + L R +G+ SL NL GE+RE+T+ Sbjct: 191 RRMMDKINHPVITLRREKIGNLSLGNLKLGEYRELTN 227 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 212 bits (541), Expect = 6e-54, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V PE + R+ L+ KP ++ +DE GRK Sbjct: 87 RVAVNGKVIDSPALN---VTNLDRIVVDGNPLPEAEAPRLWLYYKPNGLVTTTSDEKGRK 143 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V GRLD +SEGLL+LTN+G ++ +L P + Y V++ G P Sbjct: 144 TIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKRQLELPSTGWLRRYRVRINGRPQD 203 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + LR GV ++ P L +R+ +WL I L EG+NR+ Sbjct: 204 HEFDVLRKGVVIDGERFQPMTISL---------------DRQQGANAWLTIGLREGKNRE 248 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +RR VG+P RL+R + G + L L GE E+ Sbjct: 249 IRRAMEEVGYPVNRLLRISYGPFQLGTLKEGEVEEL 284 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 212 bits (541), Expect = 6e-54, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 93/216 (43%), Gaps = 24/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q I+ + S QV + + R + +L NKP + +DE RKT Sbjct: 26 QVRINGQVVTDLST---QVGPTDAVKVGSRLLRTEQKITVLLNKPAGYVCTASDERDRKT 82 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P VY GRLD+DSEGLL++TN+G L LT P + K Y V ++ Sbjct: 83 IFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLSLALTHPRYKIEKEYEVLLDKPFNPQ 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 E L G + G E+++ + L +TL +G RQ+ Sbjct: 143 DREKLLKGFHIIGGRAKAERVEILNP-------------------THLSLTLTQGIKRQI 183 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R M +G+ RL R +G + + GEWR +T Sbjct: 184 RLMLYDLGYEVERLARIRLGPLKIGEMRPGEWRLLT 219 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 212 bits (540), Expect = 7e-54, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 20/218 (9%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFT---DEAGR 60 ++ +++ R + + + NKP V+ DE GR Sbjct: 57 VRVNGQVVRELGTRVFP--ERDRVTVRGEPIQAESKVYYVLNKPDGVVSSAAGSVDERGR 114 Query: 61 KTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + + +Y GRLD S G+L+LTN+G L LT P K Y+V+ +G T Sbjct: 115 PTVISLLHGVSERLYPVGRLDFHSRGVLLLTNDGGLAEALTHPRHGVVKTYHVKFQGKLT 174 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ + LR+GV L+DG A P R++ W +I + EG NR Sbjct: 175 EEQEQLLRDGVELDDG-------------AITRPVAELFAFRETATNVWYQIGIREGLNR 221 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 Q+RRM +G P L+LIR A+GD + D + GE+R + Sbjct: 222 QIRRMGEAIGHPVLKLIRVAIGDITADGVPEGEFRALN 259 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 212 bits (540), Expect = 7e-54, Method: Composition-based stats. Identities = 62/217 (28%), Positives = 98/217 (45%), Gaps = 20/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRK 61 + + + + + + + + R IL NKP L D+ GRK Sbjct: 28 RVAVDGVAVTELGRK--FDPANHTITVDSKPIHSDEKRFYILLNKPRGYLSTARDDRGRK 85 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P +Y GRLD D+EG+L++TN+GA+ L P K+Y+ +V G T+ Sbjct: 86 TVLDLLPDFPARLYPVGRLDADTEGVLLITNDGAITQGLLHPRFEIDKVYHAEVAGPVTE 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L LR G+ L DG T A ++ R + ++ ++EGRNRQ Sbjct: 146 GGLTRLRRGILLEDGMTASAKLRIL---------------RADKGYTVVETIIHEGRNRQ 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM A +G L R +L L+ G +R +T Sbjct: 191 VRRMFAAIGCRVCALRRVRFAMLTLRGLSCGSFRHLT 227 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 211 bits (539), Expect = 9e-54, Method: Composition-based stats. Identities = 61/227 (26%), Positives = 96/227 (42%), Gaps = 25/227 (11%) Query: 1 MRQFIISEN--TMQKTSFRNHQVKRFSSQRSTRR----KPENQPTRVILFNKPYDVLPQF 54 M Q I+ + + +++ + + + + P RVI ++KP + Sbjct: 188 MEQLILEGRISVNNEPAHIGQRIQFGDQVKVNGKPIRYRIDPPPARVIAYHKPVGEVVSH 247 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D R T+ +P + GRLD ++EGLL+LT++G L +L P + Y V Sbjct: 248 DDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSGELANQLMHPRFGLEREYAV 307 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 +V G + + + L +GV L+DG E W ++T Sbjct: 308 RVLGALSNEEKQKLLDGVRLDDGIASFGTIE---------------DGGGEGANCWYRVT 352 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 + EGRNR+VRRM VG RLIR G L L G W E+ + Sbjct: 353 IAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDE 399 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 27/219 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ + + + H + ++ E + I+ NKP DV+ DE R T Sbjct: 26 RISVNDEVVTE--AKTHIDEDNDFVAFDGKRIEFKEFLYIMLNKPQDVISATDDERHR-T 82 Query: 63 LKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + + G++ GRLD+D+EGLLVLTN+G + L P K K YYV+++ + Sbjct: 83 VLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMAHELLSPKKHVPKRYYVELKKTLS 142 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ L NGV L T PA E + E + I + EG+ Sbjct: 143 KEEAAILENGVELETFTTKPAKVEFITED-------------------KVYIIISEGKYH 183 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM VG L L R MG+ LD NLA GE+RE+T Sbjct: 184 QVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELT 222 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 95/216 (43%), Gaps = 19/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + R R + ++ ++FNKP V+ D GR Sbjct: 193 RVEVDGKVVTELGVRVDPKTAVIHVDGLRIQL-DENMVYMVFNKPKGVVSTMEDPDGRPC 251 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +F+ + ++ GRLD +EGLL+LTN+G L RLT P K Y VQV G Q Sbjct: 252 ISDFVRNTHGERLFHVGRLDVATEGLLLLTNDGELANRLTHPSYEVPKTYLVQVRGPFPQ 311 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ GV L DG +LVD + +++ L+ G+NR Sbjct: 312 GIGAQLKAGVELEDGMASVDSFKLVDS---------------TPGHVLIEVVLHSGKNRI 356 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VRR+ VGFP LRL+R +G L + G R + Sbjct: 357 VRRLFDAVGFPVLRLVRVKVGPIGLGDQRQGSIRNL 392 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 98/222 (44%), Gaps = 7/222 (3%) Query: 3 QFIISENTMQKTSFR---NHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEA 58 + I V + R E Q I NKP + +DE Sbjct: 20 ELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQKKTVYIAMNKPCGYVCTVSDEL 79 Query: 59 GRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 GR+T+ + + + ++ GRLD+DSEGL++LTN+G L +L P ++ K Y V V G+ Sbjct: 80 GRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLAQKLLSPKRKIEKNYEVVVRGV 139 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTS-WLKITLYEG 175 P + ++ L G+T++ + + V + I E L + + EG Sbjct: 140 PGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPAKIFEIGQKQGDMKLSMIIKEG 199 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 + RQ+R+M +G ++L R L +L GE+R +++ Sbjct: 200 KKRQIRKMFDVIGHEVIKLKRVKFAGIELGDLRPGEFRHLSE 241 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 211 bits (538), Expect = 1e-53, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 18/215 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ K + + +V + + NKP ++ D+ R+ Sbjct: 32 KVKVNG---IKVTEQGLKVSTEDRVMVNGILINVEEKKVYYILNKPRGIVSSANDDKDRE 88 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 ++ + +P V+ GRLDR++ G L+LTN+G +T P KIY V V G + + Sbjct: 89 SVVDLVPNDIRVFPVGRLDRETTGALILTNDGDFAYYMTHPKFDLSKIYRVSVRGRLSYE 148 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +L+ G+T+ V + + + ITL+EG+NRQ+ Sbjct: 149 VTNSLKEGITIEGVEYKGVEISRV-------------KYDAAKDKTQFSITLHEGKNRQI 195 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R++ AH G P L+L RY +G +D L G++RE+ Sbjct: 196 RKIFAHFGLPVLKLHRYQIGYLDIDELKIGQYREL 230 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + + + T + N+ IL +KP L D+ GR+T Sbjct: 28 RVTVDGLPVTALGGKYDAARHEIAVDGTPIR-RNERRFYILLHKPRGCLSTAYDDRGRRT 86 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P +Y GRLD D+EGLL++TN+GA+ L P K+Y +V G T+D Sbjct: 87 VLDLLPHFPARLYPVGRLDADTEGLLIITNDGAMTQGLLHPRFEIDKVYRAEVTGNVTED 146 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L ALRNG+ L+DG T PA ++ + + ++ ++EGR RQV Sbjct: 147 GLTALRNGILLDDGRTAPARLRVL---------------HREGERTVVETIIHEGRKRQV 191 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM A +G RL R +LD ++ G +R +T Sbjct: 192 RRMFAAIGCRVQRLCRVRFAMLTLDGVSCGSFRHLT 227 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 96/216 (44%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ +++ + K + + + NKP V+ + G +T Sbjct: 30 KVTVNGEVVRELGTIINVEKDLVKV-YGKEVSLDTKKVYYMLNKPQGVISASKSKYGEET 88 Query: 63 LKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + ++ GRLD+D+ GL++LTN+G +LT P K Y V+G Sbjct: 89 VVDLLGKKEHRLFPVGRLDKDTTGLIILTNDGDFAYKLTHPKYEKEKTYEALVKGKVDSK 148 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +L+ L+ GV ++ T A LV + S ++ITL EGR RQV Sbjct: 149 SLDKLKQGVVIDGKKTSRAKVRLV---------------KMIGVNSLVEITLIEGRKRQV 193 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++M VG ++L R SL +L GE+R++T Sbjct: 194 KKMCEKVGHKVIKLNRTMENGLSLGDLEIGEYRKLT 229 >UniRef50_A3YG85 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=A3YG85_9GAMM Length = 242 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 98/174 (56%), Positives = 123/174 (70%), Gaps = 1/174 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 +I+FNKP+ VL QFT + + TL FI Y AGRLD DSEGLL+LT++GALQ + Sbjct: 2 PSIIVFNKPFQVLSQFTTDEEKATLSSFIDKANFYPAGRLDYDSEGLLLLTDHGALQHLI 61 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P + K Y VQVEG T++A+E LR GV L DG T PA A++ + WPR+PPIR Sbjct: 62 ASPQHKMPKTYLVQVEGELTKEAVEQLRVGVELKDGLTKPAEAKIASD-FEPWPRHPPIR 120 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 ERK+IPTSWL++T+ EG+NRQVRRMTA VGFPTLRLIR +G YSL ++ G W Sbjct: 121 ERKNIPTSWLELTITEGKNRQVRRMTAAVGFPTLRLIRTQIGPYSLTDIELGHW 174 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 22/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKR-FSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + + T+ S V +S + ++ NKP ++ D GR Sbjct: 50 RVAVDGRTVSDASA---WVDLATASISIDGLVIAAEAKIYLMLNKPRGLVTTRHDPEGRP 106 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + + + GRLD+ SEGLL+ TN+ L P K Y+VQ++ I Sbjct: 107 TVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTEFAQILLDPVTHVTKTYHVQIDRIMD 166 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + + A+ G+ + L R R+ SW+++ L EGRNR Sbjct: 167 DEDIAAMTAGIRHDGE---------------LLTATAARRLRQGDRNSWIEVELDEGRNR 211 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 Q+RRM +G LRL+R A+G L L G R +T+ Sbjct: 212 QIRRMLEALGTECLRLVRVAIGGLELGELPKGAVRALTE 250 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 18/214 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + + R VK+ + R + NKP V+ D+AGR Sbjct: 59 RVDVDGKVVTELGTRVDPVKQ--TIRVDGEALRKPQRLYFVVNKPEGVVTTNYDQAGRTR 116 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + +P + V+A GRLDR SEGL+++TN+G R+T P K Y V+V G + Sbjct: 117 VIDLVPTDERVFAVGRLDRASEGLIIVTNDGEFANRVTHPRYGVTKTYLVRVAGEASTAE 176 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L LR G+ L+DG ++ +R+ ++ + I L EG+NR++R Sbjct: 177 LAKLRRGIHLSDGFCKVDAIQV---------------KRRHKQSTDMVIQLSEGKNREIR 221 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R+ A +G L+L R A+G L L G WR + Sbjct: 222 RILARIGHKVLKLKRLAVGSLKLGELPLGAWRWL 255 >UniRef50_B2T6J8 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=B2T6J8_BURPP Length = 189 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 86/180 (47%), Positives = 116/180 (64%), Gaps = 4/180 (2%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ NKP+ + QF+ R +L +++ V VY AGRLD DSEGLL+LT++GALQAR+ Sbjct: 2 HLLALNKPFGTICQFSPHETRASLADWVKVPDVYPAGRLDSDSEGLLLLTDDGALQARIA 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 +P + K Y+ QVEG L+ L GV L D T P AE V+ LW R PPIR Sbjct: 62 EPRHKLVKRYWAQVEGAVDAATLKKLARGVDLGDYVTRPCRAEYVEPTDALWTRTPPIRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDY---SLDNLANGEWREVT 216 R +IPT+W+++++ EG+NRQVRRMTA VGFPTLRL+R +G SL L GE E++ Sbjct: 122 RAAIPTTWIELSITEGKNRQVRRMTAAVGFPTLRLVRVGIGALDIFSLG-LQPGESVELS 180 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 210 bits (536), Expect = 2e-53, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 91/225 (40%), Gaps = 16/225 (7%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + F V + NKP V+ D +KT+ Sbjct: 44 VQVNGEKITDPGFM---VNENDEIIFAGEPVPYFRYEYYMLNKPAGVITATED-RYQKTV 99 Query: 64 KEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +F + + GRLD+D+ GLL++TN+G RL P K K YY +++G + Sbjct: 100 LDFFGERRRKDLSPVGRLDKDTVGLLLVTNDGGFHHRLLSPKKHIDKEYYARIDGRVDEA 159 Query: 121 ALEALRNGVTLNDGPT-LPAGAEL-------VDEPAWLWPRNPPIRERKSIPTSWLKITL 172 E G+ +++ T LPA + ++ + + S +++ + Sbjct: 160 DREKFEKGIYVDEIFTALPAKLMIDGYRENALESDFMDLANSRAPKSALENGVSEIRVVV 219 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 EG+ Q++RM +G + L R +G LD L G +R +T Sbjct: 220 QEGKFHQIKRMFHALGKEVIYLKRIRIGSVVLDPTLEEGTYRRLT 264 >UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepID=B9E1X9_CLOK1 Length = 245 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 59/199 (29%), Positives = 97/199 (48%), Gaps = 17/199 (8%) Query: 21 VKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRKTLKEFIP-VQGVYAAGRL 78 + + + IL NKP + D+ GRKTL + + + VY GRL Sbjct: 50 DDERDEILVDNKIIKKENKKVYILLNKPRGYISSVKDDRGRKTLLDIVKVNERVYPIGRL 109 Query: 79 DRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLP 138 D ++ G ++LTN+G + + PG KIY ++GIP+ + ++ NG+ + T Sbjct: 110 DYNTSGAIILTNDGEVYNNIAHPGSNKSKIYIAAIKGIPSSEEIKRFENGIDIGGYITAK 169 Query: 139 AGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYA 198 A + + + +S +KI ++EG+NRQVR+M +G P + L+R A Sbjct: 170 AKFDFISS---------------NKESSKVKIEIHEGKNRQVRKMCDAIGHPVITLMRIA 214 Query: 199 MGDYSLDNLANGEWREVTD 217 +GD L NL G WR +T+ Sbjct: 215 IGDIKLGNLKEGAWRYLTE 233 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 210 bits (535), Expect = 3e-53, Method: Composition-based stats. Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 19/217 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ +T+++ + + S + + NKP + D+ RK Sbjct: 27 RVSVNGDTVRELGTKVDPI--HDSIALDGAPLRLKRKLYVALNKPRGYVCSRKDDRKRKV 84 Query: 63 LKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + +P + +Y+ GRLD DSEGL+ LTN+G LT P R K Y VEG Q+ Sbjct: 85 IGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEFSLHLTHPRYRVLKKYLATVEGRVEQE 144 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ ++G+ A + TS +++ L EG+NR++ Sbjct: 145 MLQRFKHGIVHEGEKLKVDRARTLS---------------VQNSTSLVELELTEGKNREI 189 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ G RL+R +G L L +G+WR +T+ Sbjct: 190 RRLFESQGLTVSRLVRMQIGKIKLGELRSGKWRMLTE 226 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 96/227 (42%), Gaps = 25/227 (11%) Query: 1 MRQFIISENTMQK--TSFRNHQVKRFSSQRSTRRKPE----NQPTRVILFNKPYDVLPQF 54 + + +++ + ++ + + + RV++++KP + Sbjct: 108 IEELVVAGRISVNGLPASLGQKIGPGDRVKLNGKLIPLRFSQRSPRVLVYHKPEGEIVSR 167 Query: 55 TDEAGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D GR T+ E +P A GRLD ++ GLL+ TN+G L RL P + Y V Sbjct: 168 DDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDLANRLMHPRYELTREYAV 227 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 ++ G T++ ++L +G+ L DGP + W ++T Sbjct: 228 RLLGQLTEEQGQSLVDGIQLEDGPARFLSL---------------VDAGGEGVNHWYRVT 272 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 L EGRNR+VRRM VG RL+R G L L G W E+ + Sbjct: 273 LAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPE 319 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 59/225 (26%), Positives = 94/225 (41%), Gaps = 25/225 (11%) Query: 1 MRQFIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQ----PTRVILFNKPYDVLPQF 54 M + I++ + + +V R + + + P RV++++KP + Sbjct: 86 MEELIVAGRVSVNAEPAHLGQRVLPTDQVRVNGKLIQRKNKSKPPRVLIYHKPAGEIVSM 145 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D GR T+ + +P A GRLD ++EGLL+ T++G L RL P + Y V Sbjct: 146 DDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTSSGELANRLMHPRYEVQREYAV 205 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 ++ G +++ + L G+ L DGP + W K+ Sbjct: 206 RILGELSEEQRQQLLTGIQLEDGPAKFLYVD---------------AAGGEGANRWYKVG 250 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 L EGRNR+VRRM RLIR GD + L G E+ Sbjct: 251 LKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEM 295 >UniRef50_Q5ZXB8 Pseudouridine synthase n=2 Tax=Legionella pneumophila RepID=Q5ZXB8_LEGPH Length = 222 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 101/178 (56%), Positives = 128/178 (71%), Gaps = 1/178 (0%) Query: 39 TRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARL 98 ++ILFNKPY +L QFT E +TL FI + G YAAGRLD+ SEGLL+LT++G LQ RL Sbjct: 24 PQLILFNKPYGILTQFTGELPEQTLSAFIKLPGFYAAGRLDKQSEGLLILTDDGKLQHRL 83 Query: 99 TQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 T P K Y+VQVEG+PT L+ LR G+ + D LPA A L+ EP +WPR PPIR Sbjct: 84 THPKFEKKKHYWVQVEGVPTDKDLQPLRKGLVIKDITFLPAEARLISEP-KIWPRIPPIR 142 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ERK IPT+WL+I L EG+N Q+R+MTA +GFPTLRLIRY +GD+ LD L GE++ + Sbjct: 143 ERKHIPTTWLEIILREGKNHQIRKMTAAIGFPTLRLIRYQIGDWHLDQLQPGEYKLIN 200 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 27/223 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEA 58 + ++ + ++ + + + RV++++KP + D Sbjct: 142 RISVNGL----PASLGQKIGPGDRVKVNGKLVPLRFTQRSPRVLIYHKPEGEIVSRDDPE 197 Query: 59 GRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 GR T+ E +P A GRLD ++ GLL+ TN+G L +L P + Y V++ G Sbjct: 198 GRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDLANKLMHPRYELEREYAVRILG 257 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T++ +++L +G+ L DG PA L+ + W ++T+ EG Sbjct: 258 ELTEEQVKSLTDGIQLEDG---PAKFNLLRDEGG------------EGANHWYRVTISEG 302 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 RNR+VRRM VG RL+R G L L G W E+ + Sbjct: 303 RNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPE 345 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 20/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ N +Q S + K + + + ++ NKP + DE GRK Sbjct: 65 RIAVNGNLVQDLSRQIIPGK--DKVTLDGKPIQPAKEKFYLILNKPRGYVVSQNDELGRK 122 Query: 62 TLKEFIPVQG--VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ +P +G + AGRLD++SEGLL TN+ AL LT P + K+Y V + Sbjct: 123 TVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALINLLTHPKNKVEKVYRVDINRPLNN 182 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L LR GV + G TLPAG + K+ LKI + EGR RQ Sbjct: 183 MELNMLRKGVEIEGGKTLPAGI---------------FVKSKNANGMTLKIVITEGRKRQ 227 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +R+M VG L R G L +L G WR + Sbjct: 228 IRQMIEAVGAKVTYLKRLQFGPLKLKDLPVGRWRLL 263 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 209 bits (533), Expect = 5e-53, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 96/216 (44%), Gaps = 23/216 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + ++ K + + + +K + + + L NKP + K Sbjct: 26 KVFVNG----KLATKGIDISENDEVLVEGKKIKLEEAKKYYLLNKPIGYSSTAKAQFQEK 81 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + I + +Y GRLD+DS GLL+LTN+G L RLT P K Y V+V+ + Sbjct: 82 IVLDLIDSKERIYPVGRLDKDSFGLLLLTNDGDLAFRLTHPSHNVEKEYIVKVDKTLKES 141 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ L +G+ L T A E++D ++ +K+ L EGRNRQ+ Sbjct: 142 DLKKLSSGIMLEGKITRKARFEMLDF-----------------KSNIVKVFLKEGRNRQI 184 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R+M + + + L R A G L L G +RE++ Sbjct: 185 RKMFKTLDYNVISLERIAFGKIKLGKLKVGNYRELS 220 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 209 bits (533), Expect = 6e-53, Method: Composition-based stats. Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 23/220 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTR-RKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + + +++ R K R R +Q R NKP V+ D GR Sbjct: 160 RVSVDGQIVRRFGARVDPEKS--EIRVDGMRVVTSQNLRYYALNKPRGVVSTMFDPEGRP 217 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ ++ + ++ GRLD D+EGL++LTN+G L RLT P + K Y +V G Sbjct: 218 TIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTNDGELANRLTHPRYKVTKTYLAKVPGP 277 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 +D + +R GV L+DG ++D P + ++I L+EGR Sbjct: 278 VPRDVIRQIRKGVELDDGFVKVDSFRVIDNIE---------------PKALVEIRLHEGR 322 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ VG P L R +G L+NL +G R +T Sbjct: 323 KHIVRRLMKAVGHPVSDLARTQIGPVGLNNLKSGTIRALT 362 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 209 bits (533), Expect = 6e-53, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 94/221 (42%), Gaps = 27/221 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGRK 61 Q ++ Q +V + Q IL NKP+D + DE GR+ Sbjct: 36 QVRVNGQVAQ----LGMRVGPDDIVEVNGVRVVPQTQALYILMNKPHDTITTCDDERGRR 91 Query: 62 TLKEFIPVQ-----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ + I + G++ GRLDR++ G+L+LTN+G L RL P R KIY + Sbjct: 92 TVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDGELANRLMHPRYRVEKIYVARTARP 151 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 + E LR GV L DGP + + + +YEGR Sbjct: 152 VKPEEAEQLRRGVQLEDGPARAVQVAV-----------------NPADPHEIALMIYEGR 194 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 NRQVRRM +G ++L R + + G+WR +TD Sbjct: 195 NRQVRRMLEAIGHEVVQLKRTHYAGLTTKGVRPGKWRRLTD 235 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 26/222 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 +++ ++ S+ +K + + + NKP + DE T+ Sbjct: 27 VKVNDEIVKDPSYHIDPMK--DKVELEDEEILYKENHYFMLNKPAGYITATEDEE-YPTV 83 Query: 64 KEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + ++ GRLD D+EGLL+LT +G RL+ P K YY VEG + Sbjct: 84 LDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQFGHRLSHPKWNIEKEYYAIVEGDISN 143 Query: 120 -DALEALRNGVTL--NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 D E+ G+ L T P ++++ S S + ITL EG+ Sbjct: 144 IDFSESENKGIYLKKEKYQTKPFKVKVLN---------------TSKDKSEILITLTEGK 188 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 V+R+ +G+P L L R +G+ LD +L GE+RE+T+ Sbjct: 189 YHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTE 230 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 209 bits (532), Expect = 7e-53, Method: Composition-based stats. Identities = 58/225 (25%), Positives = 90/225 (40%), Gaps = 25/225 (11%) Query: 1 MRQFIISENTMQK--TSFRNHQVKRFSSQRSTRRKPENQ----PTRVILFNKPYDVLPQF 54 M + I+ + ++ R + + P RV+L++KP + Sbjct: 252 MEELILQGRVSVNGLPAHIGQRILPTDQVRVNGKLIHRKVTTKPPRVLLYHKPSGEIVSQ 311 Query: 55 TDEAGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 +D GR T+ + +P A GRLD ++EGLL+ T +G + R P + Y V Sbjct: 312 SDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTTSGDIANRFMHPRYGVEREYAV 371 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 + G + + L +G+ L+DG W + Sbjct: 372 RTLGELAEADRQRLLHGIQLDDGEANFLRI---------------ADGGGEGVNQWYHVA 416 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 L EGRNR+VRRM VG RLIR G + L L G W+E+ Sbjct: 417 LTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQEL 461 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 209 bits (532), Expect = 8e-53, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ T+ + V P + +R+ +F+KP V+ D GR+ Sbjct: 111 RVSVNGETLTSPARN---VTENDRILIDGEPMPSRERSRLWIFHKPRGVVTTARDPEGRQ 167 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V A GRLD ++EGLL+LTN+G L + P + Y V+ G Q Sbjct: 168 TVFDVLPEDLPRVVAVGRLDINTEGLLLLTNDGGLAKVIAHPDTGWLRRYRVRAHGDTDQ 227 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L GVT++ P A L +R WL + L EG+NR+ Sbjct: 228 AQLDRLAKGVTIDGMEYGPVEATL---------------DRVQGDNVWLTLGLREGKNRE 272 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+R+ H+G RLIR + G + L +L G EV Sbjct: 273 VKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEV 308 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 95/220 (43%), Gaps = 21/220 (9%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + +++ + K + L NKP + D + Sbjct: 26 KAIFVNQKVETSAKAHIDEYK--DLVTYQGTPLVYESFVYYLLNKPSGYVSATQD-RQQA 82 Query: 62 TLKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ E + + V+ GRLD+D+ GLL+LTNNG L L P K K Y +V GI Sbjct: 83 TVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQLAHDLLSPKKHVTKEYLAKVAGIM 142 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T+ + G++L D LPA E++ TS +KIT+ EG+ Sbjct: 143 TEADKDYFARGISLKDHQCLPAHLEVLASDL-------------QQQTSLVKITIQEGKF 189 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM A G L L R +MG LD +LA GE+R +T Sbjct: 190 HQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLT 229 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 21/220 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRF-SSQRSTRRK---PENQPTRVILFNKPYDVLPQFTDEA 58 + ++ T+ HQV + P N+ T+VI+F+KP + D Sbjct: 26 RVQVNGETISDL---GHQVDETKDQVTVDGKLLKLPTNKKTKVIMFHKPAGCVCTKDDPQ 82 Query: 59 GRKTLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 GR+T+ +++P GRLD S GLL+ T++G L RLT P + YYV Sbjct: 83 GRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGELLYRLTHPSFEVPRSYYVWTTRP 142 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 ++ A + L +GV + D A E+ ++ L EG+ Sbjct: 143 LSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENGFA------------ELVLIEGK 190 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 NR++RRM +G+ L R + L +L GE+RE+T Sbjct: 191 NREIRRMMRAIGYEIRDLKRVSYCQIQLGDLPAGEFRELT 230 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 92/227 (40%), Gaps = 25/227 (11%) Query: 1 MRQFIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQP----TRVILFNKPYDVLPQF 54 M + I++ + + ++ R + + + RV+ ++KP + Sbjct: 191 MEELIVAGRVSVNGEPAHIGQRILPTDQVRLNGKLIQRKIAKSLPRVLTYHKPAGEIVSR 250 Query: 55 TDEAGRKTLKE---FIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D R ++ + + A GRLD ++EGLL+ TN+G L RL P + Y V Sbjct: 251 DDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTNSGDLANRLMHPRYNIEREYAV 310 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 + G + + L GV L DG + + W ++T Sbjct: 311 RTLGELEEGMRQKLLAGVDLGDGIGQFSKI---------------VDGGGEGVNKWYRVT 355 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 + EGRNR+VRRM VG RLIR G L +L G W E+ + Sbjct: 356 IGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEE 402 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + +QV++ + + +L NKP + DE RKT+ Sbjct: 165 VQVNGAVVTE---MGYQVQKTDKVIFDGQGITPEKPVYVLLNKPKGYISTTKDEKARKTV 221 Query: 64 KEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + V+ GRLDR + G+++LTN+G + +LT P KIY+V ++ + Sbjct: 222 MDLVANASPYRVFPVGRLDRSTTGVILLTNDGHMTKKLTHPSFNMKKIYHVTLDRKLDRA 281 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L A+ GV L +G + + P + + I ++ G NR V Sbjct: 282 DLNAIAEGVRLEEGVAEVDSISYI----------------EGKPKNEVGIEIHIGWNRVV 325 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RR+ +G+ L R + N+ G WR +T+ Sbjct: 326 RRIFQRLGYEVEALDRVMFAGLTKKNIKRGHWRILTE 362 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 72/218 (33%), Positives = 99/218 (45%), Gaps = 24/218 (11%) Query: 3 QFIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 + + + N Q+ Q RV L NKP V+ D GR Sbjct: 29 RVTVDGRVASLGDQADPNSQLIEVDGVPL----ISVQEPRVFLLNKPVGVICSCRDPQGR 84 Query: 61 KTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + +P Q G++ GRLD DS G L+LT+ G L RLT P K Y V V GIP Sbjct: 85 ATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELTLRLTHPRYNHAKTYRVLVRGIP 144 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 + AL R+G+ L+ T PA + R +S L++ L EGRN Sbjct: 145 SSQALRRWRDGLLLDGRLTRPARVHCL---------------RSRGASSLLEVELKEGRN 189 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RQ+RR+ +G P + L R A+ LD+LA G WR + Sbjct: 190 RQIRRVAELLGHPVIDLQRVAIDGIRLDDLAEGCWRRL 227 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 207 bits (529), Expect = 1e-52, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 26/219 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 R+ ++ + + K +K Q R + +K + D Sbjct: 25 RKIRVNGLFITSPKENIEEEK--DEVYYGEKKLSYQEFRYYILHKKAGYVTALEDSRE-A 81 Query: 62 TLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + +P + + GRLD+D+EGLL+ TN+G L RL P K Y+ +E Sbjct: 82 TVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNHRLLSPKSHVDKTYHASLECDI 141 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T++ALE LR GV + + TLPA AE +++ + +T+ EG+ Sbjct: 142 TEEALEKLREGVMIGEYKTLPAKAEKLED-------------------RKIALTIREGKF 182 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 QV++M VG + L R + G L +L GE +EV+ Sbjct: 183 HQVKKMLEAVGNKVIYLKRISFGKLVLGDLELGEVKEVS 221 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 207 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 68/216 (31%), Positives = 101/216 (46%), Gaps = 20/216 (9%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRKT 62 ++ + + H + +P + LF KP ++ D + T Sbjct: 44 VKVNGIVVTVPGTKVHP--ETDRVTVDGKTVPVEPEPFLFLFYKPKGIVSTLHDPDEKTT 101 Query: 63 LKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 LK+F P + GRLD SEG+L+LTNNG L R+ P + Y V+V+G+ + Sbjct: 102 LKDFFPQINPLIHVGRLDIQSEGVLLLTNNGDLAQRILHPRYEIPRTYLVKVQGVVKPEH 161 Query: 122 LEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+ LR+G V L+ P P E +ER + SW +ITL EGRNR+V Sbjct: 162 LDRLRSGKVRLDGRPVQPLELE---------------QERLTETNSWYRITLTEGRNREV 206 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RR+ + + L+L R A G+ L L GE+R VT Sbjct: 207 RRLFDALHYFVLKLTRIAFGNLDLAGLEPGEYRLVT 242 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 207 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + I+ K +V + + I NKP + Sbjct: 32 RVTING----KQPEMGTKVLPGDDVCVDGKPVAAKEKPVYIALNKPTGITCTTERNIPGN 87 Query: 62 TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + ++ GRLD+ S+GL+ LTN+G + ++ + G K Y V+V+ T + Sbjct: 88 IVDFIGHKKRIFPIGRLDKPSDGLIFLTNDGDIVNKILRAGNHHEKEYVVRVDKPITPEF 147 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 ++A+ +GV + D TLP +I L +G NRQ+R Sbjct: 148 IKAMSSGVNILDTVTLPCKVT-------------------QETKFSFRIVLTQGLNRQIR 188 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RM +G+ +L R + + SLD + NG+WR +TD Sbjct: 189 RMCEALGYEVFKLRRVRIMNISLDGIPNGKWRYLTD 224 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 207 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 23/220 (10%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + QVK K Q L NKP V+ D ++ Sbjct: 37 KVVTVNGELVTIPK---QQVKETDLVAVDGNKIAYQQYHYFLLNKPKGVISATED-RSQQ 92 Query: 62 TLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + QG+ GRLD+D+ GLL+LTN+GAL L P K K+Y ++ G+P Sbjct: 93 TVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTNDGALAHELLAPNKHVAKVYRAKIAGVP 152 Query: 118 TQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 + + G+ L DG PA +++ + + S ++I + EG+ Sbjct: 153 DPETAKKFAQGLILGDGTKLKPAKLKILKQD-------------QDNNLSQIEIQIQEGK 199 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 Q++RM VG L L R +MG L +L GE++E+ Sbjct: 200 YHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEI 239 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 94/227 (41%), Gaps = 25/227 (11%) Query: 1 MRQFIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQ----PTRVILFNKPYDVLPQF 54 M + I++ + + ++ R + + + P RV+L++KP + Sbjct: 234 MEELIVAGRVSVNGEPAHIGQRIMPTDQVRINGKPVKRKLASKPPRVLLYHKPTGEIVSH 293 Query: 55 TDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D GR ++ + +P A GRLD ++EGLL+LT +G L R P + Y V Sbjct: 294 ADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLANRFMHPRYSVEREYAV 353 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 +V G + + L +GV L+DGP W + Sbjct: 354 RVVGELAEGMRQKLLHGVELDDGPANFLRIR---------------DGGGEGTNHWYHVA 398 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVTD 217 L EGRNR+VRRM G RLIR G SL L G W E+ D Sbjct: 399 LAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELED 445 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 23/220 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + +++ + R + R + N+ + NKP + +DE GR Sbjct: 105 RVEVNDRIVTTQGVRVNP--NNDVIRVDGVRIHINEDLEYFVLNKPRGMHSTMSDELGRP 162 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 + + + Q ++ GRLD D+EGLL+LTN+G L RL P K Y V G Sbjct: 163 CVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGELANRLMHPKYEVSKTYLATVRGE 222 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T + ALR+GV L DGP A+++D S L+I ++EGR Sbjct: 223 ATNKLVSALRDGVELEDGPAKADFAQIID---------------VFQGKSLLRIEIHEGR 267 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ +GFP RL+R + L + G R + Sbjct: 268 KHIVRRLFDELGFPVERLVRTKLHTVQLGDQKPGSLRALN 307 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 207 bits (527), Expect = 2e-52, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 93/216 (43%), Gaps = 20/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ +++ + R + + ++ NKP + +D R Sbjct: 28 RVSVNSEIVRELGSK--ADIERDEIRVDGKLICAEETKVYVMLNKPRGYVTALSDPQKRP 85 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +P ++ GRLD DSEGLL+LTN+G R+ P R K Y V++ G Sbjct: 86 LVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGGFAQRVQHPRYRISKTYRVKISGRLNA 145 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ G+ L DG P L E + +SWL + + EGRNR Sbjct: 146 AEFNRLQKGLELEDGKFAPDEVAL---------------EEINPKSSWLTMKISEGRNRV 190 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +RR +G LRLIR A+ D L NL G++R + Sbjct: 191 IRRAFEQLGHEVLRLIRTAVADLHLGNLREGDYRLL 226 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 95/217 (43%), Gaps = 27/217 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + I++ + V + + VI +KP V +D + Sbjct: 26 RVTINDQI----AGIGSSVSESDVVCLDGERVRLPEKKVVIALHKPVGVTTTKSDPHAER 81 Query: 62 TLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE-GIPTQ 119 T+ + +P G++ GRLD+DSEGLL+LTN+G L +LT P K+Y + G ++ Sbjct: 82 TVYQLVPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLKLTHPRYGVRKVYRAWCKHGRVSE 141 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L GV L+DG AE E A +I + EG+ R+ Sbjct: 142 ADCRRLVEGVALDDGLAQALEAEPTQEGA--------------------RIVMAEGKKRE 181 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM +G+P RL+R +G L L GEWR +T Sbjct: 182 VRRMLGRLGYPVTRLVRLQVGPIKLGKLNPGEWRYLT 218 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 62/222 (27%), Positives = 95/222 (42%), Gaps = 26/222 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP---ENQPTRVILFNKPYDVLPQFTDEAG 59 + ++ +Q + + E L +KP V+ D G Sbjct: 28 RVTLNGKPVQ---LGDQADPEGDRLCVDGKPLKATERPRHYYYLIHKPKGVVSTCADPKG 84 Query: 60 RKTLKEFIPVQ-----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 R T+ + +P G++ GRLD S G L+LTN+G LT P K Y V ++ Sbjct: 85 RSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDGNFTLALTHPRYHIPKTYRVWLK 144 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 G + L+ R GV L D TLP L + + + + I L E Sbjct: 145 GKVPEHVLDQWRQGVMLGDRRTLPTQIHL---------------KTITQDKTCIDIMLTE 189 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 GRNRQ+RR+ +GFP ++L R A+G+ L +L G+ R +T Sbjct: 190 GRNRQIRRVAEQLGFPVVKLHRLAIGNLHLGDLQRGQARPLT 231 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 206 bits (526), Expect = 3e-52, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 24/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRK 61 + I + +V +++ + +I F+KP ++ Sbjct: 44 EVTIDGEV----AVMGSKVLPGQKVVLGKKEVSREEKMVLIAFHKPKGIVCTTEKREPDN 99 Query: 62 TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + Q +Y GRLD+DSEGL+ LTNNG + ++ + G K Y V V T Sbjct: 100 IIDYIKYSQRIYPIGRLDKDSEGLIFLTNNGDIVNKILRAGNHHEKEYIVTVNKPITAAF 159 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 L+ + GV + D T P E +D+ +I L +G NRQ+R Sbjct: 160 LKGMAGGVPILDTVTKPCTLEAIDK-------------------VTFRIILTQGLNRQIR 200 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RM H + +L+R + + +L L G +R +TD Sbjct: 201 RMCEHFDYKVTKLVRIRIMNVNLGRLKVGGYRNLTD 236 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 88/221 (39%), Gaps = 27/221 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE----NQPTRVILFNKPYDVLPQFTDEA 58 + ++ + ++ R + + RV+ ++KP + F D Sbjct: 197 RVSVNGE----PAHLGQRILPTDQIRVNGKIIKRRLRPAQARVLAYHKPTGEVVSFKDPE 252 Query: 59 GRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 GR T+ + +P A GRLD ++EGLL+ T +G L RL P + Y V+V G Sbjct: 253 GRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTSGDLANRLMHPSYGAEREYAVRVLG 312 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 A + L GV L DGP E W ++ + EG Sbjct: 313 ELDAAARDELLEGVQLGDGPARFLSLE---------------EAGGEGANRWWRVVISEG 357 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 RNR+VRRM VG RLIR L L G++ E+ Sbjct: 358 RNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVEL 398 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 206 bits (525), Expect = 4e-52, Method: Composition-based stats. Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + V + TR+ L++KP ++ D GR Sbjct: 70 RIAVNGTVVTTP---VLNVIPSDHITVDEIPIPPIERTRLWLYHKPSGLVTTNRDPEGRP 126 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + V + GRLD ++EGLL+LTN+G L L P + Y V+ G Q Sbjct: 127 TVFDNLPKEMPRVVSVGRLDINTEGLLLLTNDGGLARVLELPLTGWVRKYRVRAHGKIKQ 186 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L+NG+ ++ A + +R+ WL + L EG+NR+ Sbjct: 187 SELDKLKNGIAIDGIFYGSIDASI---------------DREQGSNVWLSVALREGKNRE 231 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ++ +G RLIR + G + L +L G RE+ Sbjct: 232 IKNFLGALGLSVNRLIRVSYGPFQLSDLEEGAVREL 267 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 91/221 (41%), Gaps = 27/221 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEA 58 + ++ + +V R + +P RVIL++KP + D Sbjct: 148 RVSVNGE----PAHIGQRVAPSDQVRVNGKPVARPNTKKPPRVILYHKPAGEIVSHDDPG 203 Query: 59 GRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 GR ++ +P + GRLD ++EGLL+ T +G + R+ P T + Y V+V G Sbjct: 204 GRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMANRIMHPRYGTEREYAVRVLG 263 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 ++L G+ L DG + + W ++TL EG Sbjct: 264 EMDDATRKSLVEGIELEDGQAAFGALDYLGGD---------------GSNRWYRVTLQEG 308 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 RNR+VRRM VG RLIR GD L L G W E+ Sbjct: 309 RNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEEL 349 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 206 bits (524), Expect = 6e-52, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 23/220 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + R + R + N+ + NKP + +D+ GR Sbjct: 114 RVEVNGRIVTTQGTRVNP--NSDVIRVDGVRININEDLEYFVLNKPRGMHSTMSDDLGRP 171 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 + + + Q ++ GRLD D+EGLL+LTN+G L RL P K Y V G Sbjct: 172 CVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGELANRLMHPKYEVRKTYLATVRGE 231 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 + + LR G+ L DGP +++D S +++ ++EGR Sbjct: 232 AGPNLVTTLRKGIELEDGPAKADYVQIID---------------TFQGKSLIRLEIHEGR 276 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM GFP RL+R + L G R + Sbjct: 277 KHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKPGSLRALN 316 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 205 bits (523), Expect = 8e-52, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 99/219 (45%), Gaps = 25/219 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q I + + + + +K + ++ NKP D + TDE K Sbjct: 25 KQVTIDDKVETSPKKQINP--ELEIVKVNDQKIDFVNKVYLMLNKPKDYISATTDEQ-HK 81 Query: 62 TLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + I ++ GRLD+D+EGLL++TN+G L PGK K Y V + T Sbjct: 82 TVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNHELMSPGKHVAKTYEVISQKNIT 141 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ + A + G+ LN+G PA DE + +T+YEGR Sbjct: 142 KNDINAFKVGIELNEGLAKPAKLVQGDELNKSF------------------VTIYEGRYH 183 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 QV+RM + L L R +GD LD LA+GE+R +T Sbjct: 184 QVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLT 222 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 205 bits (523), Expect = 8e-52, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + S +QV +K + I NKP D+ K Sbjct: 26 KVYVNGTILLDLS---YQVNDTDIVEVEGKKINLKEDKIYIAINKPIGYASTVKDKFADK 82 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + I VY GRLD+DS GLL+LTN+G LT P KIY V V+G P + Sbjct: 83 KVVDLIKSDTRVYPVGRLDKDSHGLLILTNDGEFTYELTHPKFEHKKIYEVLVKGKPNKT 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ L++G+ L+ + E ++ + ++T++EGRNRQ+ Sbjct: 143 EIKQLKDGILLDGYKLKKSKIEFIEN---------------VKNDTKYRVTIFEGRNRQI 187 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREV 215 RRM + P L L R +G+Y ++N L +GE++ + Sbjct: 188 RRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLL 223 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 205 bits (522), Expect = 9e-52, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 97/216 (44%), Gaps = 17/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 Q ++ + K +V +K + L NKP + + + Sbjct: 30 QVKVNGKIITKL---GKKVSSDDIVYVDNKKINEESFEYYLLNKPAGYVSSNRSYPNQPS 86 Query: 63 LKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + E I + +++ GRLD+D+ G+L+LTN+G L +LT P R + Y V+GI +D Sbjct: 87 VIELIKTKTRIFSVGRLDQDTTGVLLLTNDGELTQKLTHPKHRIKRTYAAWVKGIVNEDE 146 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 +E L + + P A ++ + + S ++IT+ EG+N +++ Sbjct: 147 IEQLTKPIRFDGEIYFPQAARIL-------------KVDQKRQESLIEITIAEGKNHEIK 193 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 ++ +G P ++L R ++ NL G+ R +++ Sbjct: 194 KILDFIGHPVIKLNRDMFDGITIGNLKKGQHRALSE 229 >UniRef50_C3BQR1 Pseudouridine synthase n=3 Tax=Bacillus RepID=C3BQR1_9BACI Length = 203 Score = 205 bits (522), Expect = 9e-52, Method: Composition-based stats. Identities = 53/215 (24%), Positives = 85/215 (39%), Gaps = 25/215 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ--PTRVILFNKPYDVLPQFTDEAGRK 61 I+ + V + E + I F+KP + D Sbjct: 1 MAINGEVCK----HGTIVTENDIVMIDGKTIEKEDKEKIYIAFHKPVGITCTAADHIDGN 56 Query: 62 TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 ++ + ++ GRLD+ SEGL++LTN+G + ++ K Y V V+ T Sbjct: 57 IIEYINHPERIFPVGRLDKASEGLILLTNDGRIANQILHGDYEHEKEYIVTVDKPFTDWF 116 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 ++ + GV + DG T V +S +I L +G NRQ+R Sbjct: 117 IDGMSRGVKIKDGITKQCKVTRV-------------------NSSTFRIILTQGMNRQIR 157 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM+ G+ +L R + + LD L GEWR VT Sbjct: 158 RMSRAFGYTVTKLKRVRIMNIKLDGLEAGEWRNVT 192 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 87/218 (39%), Gaps = 20/218 (9%) Query: 3 QFIISENTMQ-KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + +++ + V +R RV+++NKP + D GR Sbjct: 82 RLLVNGKPVTPGQKATVSDVFELDGKRLEVAAAAEVLRRVLIYNKPEGEVTTRKDPEGRP 141 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + +P + GRLD ++ GL++ T +G L RL P + Y V++ G Sbjct: 142 TVFDRLPRLREHRWISIGRLDLNTTGLVMFTTDGELANRLMHPSSEIDREYAVRIFGEVD 201 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 +E LR GVTL DG + + W +TL EGRNR Sbjct: 202 DAMIERLRTGVTLEDGEAKFSDIS---------------AAGGTGMNRWFHVTLLEGRNR 246 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 +VRR+ G RL R G L L G+W E+ Sbjct: 247 EVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEEL 284 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 22/219 (10%) Query: 3 QFIISENTMQKTSFR--NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 + ++ + ++ N V +R +NQ + KP + +DE GR Sbjct: 46 RVKVNGHPVKVGDKMDPNRDVLHVDDERIY--IQKNQQLYYLALYKPRGYVTTASDELGR 103 Query: 61 KTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 KT+ E + +Y GRLD+DSEGLL++TN+GA +T P K+Y V V+ Sbjct: 104 KTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGAFAQAVTHPSGGISKLYRVTVQPRAD 163 Query: 119 QDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 + + + +GV L+DG T+P +V + + +++TL EG+N Sbjct: 164 ESQILKMSSGVVLDDGTKTMPCAINVVTDEPGR---------------TVMEMTLKEGKN 208 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R++RRM VG +RL R A G L L G +RE+T Sbjct: 209 REIRRMCEAVGLEVVRLKRNAEGVVKLGMLKPGTYRELT 247 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 68/217 (31%), Positives = 92/217 (42%), Gaps = 27/217 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN--QPTRVILFNKPYDVLPQFTDEAGR 60 + ++ + V R R E Q + L KP + DE GR Sbjct: 31 RVTVNGQI----ATLGRTVMPDDEVRVDGRLIEAPAQESVTFLLYKPAGYVTTARDEYGR 86 Query: 61 KTLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + +P G++ GRLD+DSEGLL+LT +G L LT P K Y G P Sbjct: 87 RNVLSAMPPIPGLHPVGRLDKDSEGLLLLTTDGQLTLTLTHPRYGHEKAYRAWTAGQPVA 146 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L L G+ L DGP A A +TL EGRNRQ Sbjct: 147 AELRVLETGIELADGPARALSARPARGGAL--------------------VTLTEGRNRQ 186 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM +G+P RL+RY +G L +L GE+R ++ Sbjct: 187 VRRMLDAIGYPVHRLLRYRVGGLWLGDLEPGEYRLLS 223 >UniRef50_B1ZYI5 Pseudouridine synthase n=2 Tax=Bacteria RepID=B1ZYI5_OPITP Length = 188 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 89/176 (50%), Positives = 113/176 (64%), Gaps = 2/176 (1%) Query: 43 LFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQ 100 +KPY VL QFT E G + TL EF VY GRLD DSEGLL+L++ L RL Sbjct: 4 ALHKPYGVLSQFTPEPGSRWRTLAEFGLPPAVYPLGRLDADSEGLLLLSDEPGLNTRLLN 63 Query: 101 PGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER 160 P + + Y+VQVE +PT AL L+ GV + D T P A +D L PR+PPIR R Sbjct: 64 PDQAHRREYWVQVERVPTDAALAQLQRGVKIGDYATRPCAARRLDPAPTLPPRDPPIRAR 123 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 K++P WL + L EG+NRQVRRMTA +G PTLRL+R +GD++L LA G+WRE+T Sbjct: 124 KNVPDCWLALELIEGKNRQVRRMTAAIGHPTLRLVRVRIGDFALGKLAVGQWRELT 179 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 97/220 (44%), Gaps = 27/220 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ NT + R+ + NKP V+ D + T Sbjct: 33 RVMVNGNTETSPETKV--DSNHDKIFVDSRELSYVTLEYFMLNKPAGVVSASND-KKQTT 89 Query: 63 LKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + I + ++ GRLD+D+EGLL++TN+G L +L P K K+Y+ ++ + Sbjct: 90 VVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDGDLAHQLLSPKKHVDKVYFAKLRDPLKK 149 Query: 120 DALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + EA G+ +++ T LPA E + E +T+ EG+ Sbjct: 150 EDEEAFAAGLKIDEEFTALPAKLERISEQEAY-------------------VTIREGKFH 190 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVTD 217 Q++RM + L R +MG LD L+ GE+RE+T+ Sbjct: 191 QIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTE 230 >UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR68_ACIBL Length = 254 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 19/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ + + + NKP ++ +DE GR+T Sbjct: 38 EVRVNGKVERNPERPTDPAR--DRVEVAHIAIRAARFLYYVVNKPRGLITTASDEKGRET 95 Query: 63 LKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + +P V GRLD+ SEGLL+LTN+ A++T P K Y+VQV +P++ Sbjct: 96 IYSLLPPDSPWVAPVGRLDKASEGLLLLTNDSEWAAKITDPNSHLDKTYHVQVSTLPSEQ 155 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +EAL G+ + L ++ R WL+I L EG+NRQ+ Sbjct: 156 MVEALSRGIRSDGELLLAKRVSIL---------------RAGGKNGWLEIVLEEGKNRQI 200 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM A + LRLIR A+G +L L G R +T Sbjct: 201 RRMVAALQIEVLRLIRVAIGPLTLGELPKGGCRALT 236 >UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIA3_BDEBA Length = 265 Score = 204 bits (521), Expect = 1e-51, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 98/219 (44%), Gaps = 18/219 (8%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP---TRVILFNKPYDVLPQFTDEAGR 60 ++ + + +V S + KP +P + NKP VL D R Sbjct: 7 VTVNGKRVYEL---GIKVDPQSDRILVDGKPLRKPLTQKIYAILNKPTGVLTTMDDPHDR 63 Query: 61 KTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ E++ V+ GRLD DSEG+L+LTN+G ++ P K Y V++ G P Sbjct: 64 PTVAEYLTELPVRVFPVGRLDWDSEGMLLLTNDGDFANKVMHPKAEVTKTYLVKLNGKPE 123 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 LE L+ GV++ G E + + KS W KI + EG+NR Sbjct: 124 PFQLEKLKKGVSIVGGKVSARHIEKI----------KKTGDNKSEKYEWYKIVITEGKNR 173 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 Q+R+M A +GF +RL R A+G + + GE + D Sbjct: 174 QIRQMFAKIGFDVMRLQRVAIGRLRMGAVKTGELVYLND 212 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 12/222 (5%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + S ++ + +K + +FNKP + D R T+ Sbjct: 27 VKVNGEIITEPSIDINE--KLDDVEYLEKKVVHTGKVYYMFNKPSGCITATKDNIHR-TV 83 Query: 64 KEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 ++ GV+ GRLD+D+EGLL+LTN+G + ++ P K K Y+ G + Sbjct: 84 FDYFDEDMNGVFHVGRLDKDTEGLLLLTNDGEFEHKVMHPEKHVEKTYFFWALGSLDDED 143 Query: 122 LEALRNGVTL--NDGPTLPAGAELVDEPAWLWPRNP----PIRERKSIPTSWLKITLYEG 175 + L+ GV + N+ T PA ++ +++ + ++ + P +T+ EG Sbjct: 144 KKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKEEIPINSLKNKDHQPVVSGYLTISEG 203 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 + QV+RM VG + L R ++G LD L G++R++T Sbjct: 204 QKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKMGDYRDLT 245 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V P + TR+ L +KP V+ D GR Sbjct: 47 RVTLNGKVLTSPAIN---VTDSDRITVDDEPLPARERTRLWLLHKPRGVVTTARDPEGRP 103 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + V A GRLD ++EGLL+LTN+G L + P + Y V+ G TQ Sbjct: 104 TVFDGLPEELPRVVAIGRLDINTEGLLLLTNDGGLAKVIAHPDTGWLRRYRVRAFGDVTQ 163 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L+ G+T++ P A L +R WL + L EG+NR+ Sbjct: 164 PDLDKLKKGLTVDGMEYGPIEATL---------------DRAQGDNVWLTLGLREGKNRE 208 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+R+ H+G RLIR + G + L +L G E+ Sbjct: 209 VKRILEHLGLSVNRLIRLSFGPFQLGDLEVGLVEEI 244 >UniRef50_A0Z1Z6 Pseudouridylate synthase n=2 Tax=Proteobacteria RepID=A0Z1Z6_9GAMM Length = 208 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 87/177 (49%), Positives = 113/177 (63%), Gaps = 4/177 (2%) Query: 39 TRVILFNKPYDVLPQFTDEAGRK---TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQ 95 +IL NKP+ VL QF+D TL + AGRLD DSEGL +LT++G LQ Sbjct: 24 PDIILLNKPFRVLSQFSDRDNDPPRLTLANLLSAPEFRVAGRLDYDSEGLTLLTDDGKLQ 83 Query: 96 ARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNP 155 ++ P + K Y+VQVEG P Q A+E L +GV LNDG T PA +D P LW R+P Sbjct: 84 QQIANPKFKVWKTYWVQVEGAPKQQAIEQLTSGVVLNDGLTKPAKVRAIDPPD-LWERSP 142 Query: 156 PIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 +R R IP +WL+I++ EGRNRQ+RRMTA V PTLRL+R A+GD+ + NL GE+ Sbjct: 143 SVRFRAHIPDAWLEISIQEGRNRQIRRMTAAVNLPTLRLVRIAIGDWEIGNLQPGEY 199 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 204 bits (519), Expect = 2e-51, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 26/220 (11%) Query: 4 FIISENTM--QKTSFRNHQVKRFSSQRSTRRKP---ENQPTRVILFNKPYDVLPQFTDEA 58 I S + + + ++ K + + + + NKP + T+ Sbjct: 25 LITSGRVLLNDRPAALGNRYKPGDTVEVDGSLITAAKKEKRVYLALNKPPG-ITTTTELH 83 Query: 59 GRKTLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + F+ Q ++ GRLD+DSEGL+ LTN+G + ++ + K Y V+V Sbjct: 84 IKDNIISFVNYPQRIFPIGRLDKDSEGLIFLTNDGDIINKILRAANNHEKEYVVRVNKPI 143 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 + L + GV + D TLP ++ +ITL +G N Sbjct: 144 DTNFLHQMSQGVPILDTRTLPCKVQMTGRQ-------------------TFRITLTQGLN 184 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RQ+RRM ++G+ + L R + + LD L G+WR +++ Sbjct: 185 RQIRRMCEYLGYTVVGLQRVRIMNVRLDKLPLGKWRYLSE 224 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 24/218 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + +++ + + ++ + R +K EN IL NKP DV+ +DE RK Sbjct: 68 EVMVNGKVVMELGYKVDR--RADEVVVNGKKLHENTQKIYILLNKPKDVVTTSSDEKSRK 125 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ E + V+ GRLDRD+ G+L+LTN+G L RLT P K Y ++ T Sbjct: 126 TVVELVGLKDRVFPVGRLDRDTTGVLLLTNDGDLTYRLTHPTFGVQKQYVATLDKKITSV 185 Query: 121 ALEALRNGVTLND--GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 L+ ++ G L D P A ++D+ +W + ++EG+N Sbjct: 186 DLQNIKKGFRLKDTGEKVSPCNARILDDGYTIW------------------VAIHEGKNH 227 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 Q+ RM G+ +L+R A G + + GEWR +T Sbjct: 228 QIHRMFWSFGYNVKKLVRVAYGGLEVGTMRRGEWRFLT 265 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + + + + V S + PE +P R+ ++KP ++ D GR Sbjct: 34 RVKVDGVMLTSPAVN---VDDDSVILVDEKPLPEIEPPRLWRYHKPDGLVTSNRDPEGRS 90 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V GRLD DSEGLL+LTN+G L L P + Y V+V G + Sbjct: 91 TVFDRLPKDLPRVVTVGRLDIDSEGLLLLTNDGGLARYLELPSTGWVRRYRVRVFGPLDE 150 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L+ GV + P + ++ + SWL + L EG+NR+ Sbjct: 151 AKLDNLKKGVRIEGVEYGPIEVTI---------------DKATRTNSWLTVALREGKNRE 195 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +RR+ HVG RLIR G + L + G E+ Sbjct: 196 IRRVMEHVGLTVSRLIRTTYGPFQLGEVPPGGVEEI 231 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 203 bits (518), Expect = 3e-51, Method: Composition-based stats. Identities = 67/229 (29%), Positives = 100/229 (43%), Gaps = 33/229 (14%) Query: 3 QFIISENTMQKTSFRNHQVKRF-SSQRSTRRKPENQPTR---VILFNKPYDVLPQFTDEA 58 + I+ + +V + Q +L NKP V+ D Sbjct: 54 RVQINGT----LAELGQKVNPERDIITVDGKSVSAQRHHRLTYLLLNKPTGVVSTCYDPQ 109 Query: 59 GRKTLKEFIPVQ-----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQV 113 GRKT+ + +P + G++ GRLD S G L+LTN+G L +LT P K Y + V Sbjct: 110 GRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDGDLTFKLTHPSHNIPKTYQILV 169 Query: 114 EGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 +G P + L+ R GV L+ T A L++ A S L+I L Sbjct: 170 KGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEK---------------SRLEIVLQ 214 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-----LANGEWREVTD 217 EGRNRQ+RR+ +G+P ++L R A+G L L G +R + D Sbjct: 215 EGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 64/221 (28%), Positives = 98/221 (44%), Gaps = 24/221 (10%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGR 60 +++ +++ N S + H E I+ NKP D + D Sbjct: 22 LKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKDYISATED-HHS 80 Query: 61 KTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 KT+ + IP ++ GRLD+D+EGLL++TN+G L P K K Y V Sbjct: 81 KTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPI 140 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 T+D ++A + GVTL+DG PA +D +T+YEG+ Sbjct: 141 TEDDIQAFKEGVTLSDGKVKPAILTYIDNQTS-------------------HVTIYEGKY 181 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM + L L R + D LD NL +GE+R +T+ Sbjct: 182 HQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTE 222 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 203 bits (517), Expect = 3e-51, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 90/227 (39%), Gaps = 25/227 (11%) Query: 1 MRQFIISEN--TMQKTSFRNHQVKRFSSQRSTRR----KPENQPTRVILFNKPYDVLPQF 54 M I+ + + +++ + + + P RVI ++KP + Sbjct: 215 MEALILQGRISVNNEPAHIGQRIQYGDQVKINGKPIRYRIAPPPPRVIAYHKPVGEVVTH 274 Query: 55 TDEAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYV 111 D R T+ +P + GRLD ++EGLL+ +++G L +L P + Y V Sbjct: 275 DDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSGDLANQLMHPRFGLEREYAV 334 Query: 112 QVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKIT 171 +V G + + L GV L+DG W ++T Sbjct: 335 RVLGALNAEEKKKLLEGVRLDDGMAQFGTI---------------EEGGGEGSNHWYRVT 379 Query: 172 LYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 + EGRNR+VRR+ VG RLIR G L L G W E+ + Sbjct: 380 ISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDE 426 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 203 bits (517), Expect = 4e-51, Method: Composition-based stats. Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 26/215 (12%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT- 62 ++ + + F+ + R + I+ NKP + + A Sbjct: 27 VTVNGKQIVEVDFKINP--EEDIIEVDGRVAKFSKQIYIMMNKPKGYVCSNEELASLTVF 84 Query: 63 --LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + + ++ GRLD+D+EGLL++T++G R+ P KR K Y V++E ++ Sbjct: 85 SLISDDLKYRDLHTVGRLDKDAEGLLIITDDGEYTHRVISPKKRIEKEYLVRLEKEVDEE 144 Query: 121 ALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L NG+ L+DG TLPA ++D + +K+ +YEG+ Q Sbjct: 145 KLNEFENGIILDDGYKTLPAKYTIIDS-------------------TTVKLCIYEGKYHQ 185 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWR 213 V+RM +G + L R +G +LD +L GE+R Sbjct: 186 VKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYR 220 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 99/217 (45%), Gaps = 21/217 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + I+ + + K ++ ILFNKP +V+ +DE R+ Sbjct: 38 RVTINGVLASEPGVKVVPGKDEVIVDGSKFAQPEGRKIYILFNKPRNVITTSSDERNREM 97 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + +FI + VY GRLDR + G+L+LTN+G L +L P K Y ++ Q + Sbjct: 98 VLDFIDVNERVYPVGRLDRKTTGVLLLTNDGMLANKLMHPSSNVKKEYIAVLDAPFPQAS 157 Query: 122 LEALRNGVTLND--GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L L G+ L+D P A+++ + + +W I+++EG+N Q Sbjct: 158 LPLLTGGMRLSDTGEKVSPCQAKIMGDGSQVW------------------ISIHEGKNHQ 199 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRRM +GF RL R ++ +L G+WR +T Sbjct: 200 VRRMFKTLGFEVTRLDRPTYAGLTVGDLRRGQWRHLT 236 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 202 bits (516), Expect = 4e-51, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 26/220 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ ++ +++ + + NK D + D KT+ Sbjct: 30 VKVNGLVVKDP---GYKITLTDIVVYYDETLNRKEFYYFMMNKAPDCITATEDPRE-KTV 85 Query: 64 KEFIPVQG----VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 +++ + ++ GRLD+++EGLL+ T +G L T P K YY ++ T Sbjct: 86 MDYLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHYYTSPKHFVEKEYYAEISAPVTA 145 Query: 120 DALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + +G+TL+DG TLPA + D + L EG+ R Sbjct: 146 FDISQFESGITLDDGYKTLPARLAIPDPS----------------NPHIATVWLREGKYR 189 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 Q+RRM +G L R MG+ LD +L G +RE+T+ Sbjct: 190 QIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTE 229 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 202 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 24/218 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + I + + V+ + + +L NKP D + D R+T Sbjct: 36 RVHIDGERVDQ---HGTCVREGQTVTVDGEEVYPLEFEYLLLNKPKDTISTTDDPKDRRT 92 Query: 63 LKEFIPVQ-----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + I V G++ GRLDR++ G+L+++N+G L RL P KIYYV+V+ Sbjct: 93 VLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSNDGDLAHRLMHPRYEIPKIYYVRVQDDV 152 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 L+ L+ GV L+DG +D + + + L+EGRN Sbjct: 153 KPHQLDQLKRGVELSDGAAAADQVAYLDP----------------QRKTDIALELHEGRN 196 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RQ+RRM +G ++L R + L GEWR + Sbjct: 197 RQIRRMMEALGHTIVQLERAKYATLTTGRLQRGEWRRL 234 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 202 bits (516), Expect = 5e-51, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ + VKR + + + TR+ L++KP ++ D GR Sbjct: 129 RIAVNGKVLESPAVN---VKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRP 185 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ E +P + V + GRLD ++EGLL+LTN+G L L P + Y V+ G TQ Sbjct: 186 TVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQ 245 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L+NG+ ++ AEL ER W+ I L EG+NR+ Sbjct: 246 QQLDELKNGIAVDGVFYGSVEAEL---------------ERVQGANVWISIGLREGKNRE 290 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+ + +G RLIR + G + L +L G RE+ Sbjct: 291 VKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREI 326 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 92/218 (42%), Gaps = 24/218 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGRK 61 + ++ +++ + + +KP VL D GR Sbjct: 29 RVAVNGIIVREMGSK--FDPEMDKVMVDGETITRTLTKSYLALHKPKGVLSTMFDPEGRP 86 Query: 62 TLKEF--IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 +L +F + + ++ GRLD+DSEGL++LTN+G L R T P K Y ++ +GI Sbjct: 87 SLDDFIDLRKERLFHVGRLDKDSEGLILLTNDGDLTFRATHPSFGLEKTYIIEFDGILPT 146 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L GV L DG + + W++++++EGR Sbjct: 147 GVDKVLLKGVELEDGMGRVLTFKQLSPK-------------------WIEVSIHEGRYHI 187 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RR+ VG LRLIR G SL + G WR++ D Sbjct: 188 IRRLMEAVGVNVLRLIRTKFGPISLGDTPEGRWRDLND 225 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 90/216 (41%), Gaps = 18/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK- 61 + ++ T+ + R + + + R ++ NKP + DE GR Sbjct: 50 RVTVNGETVTEPGRRIDPDVDEVAV-DDQAVQLDTSKRYLMLNKPVGIYSSLRDERGRPD 108 Query: 62 -TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + ++ GRLD ++ GLL+LTN+G L L P K Y +V G T Sbjct: 109 LREFTEEFEERLFNVGRLDAETSGLLILTNDGDLAHVLAHPSFGVLKTYIAKVTGRVTPQ 168 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 ++ L GV L DGP A ++ + ++ITL+ GRNR V Sbjct: 169 TIQRLTQGVDLEDGPIQADRARILSG---------------GGDQTLVEITLHSGRNRIV 213 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM VG P L+R G L +L G R++T Sbjct: 214 RRMLDEVGHPVEELVRRQFGPLHLGSLGVGRVRDLT 249 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 98/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + I T++K + + + TR+ L++K +L D GRK Sbjct: 296 RIAIDGVTVEKPATL---LTSLDGVTVDGKPVNAPTETRLFLYHKATGLLTTERDPEGRK 352 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V GRLD ++EGLL+LT +G + L P + Y +V G +Q Sbjct: 353 TIYDRLPADLPRVMPVGRLDMNTEGLLLLTTDGGFKRMLELPATHIERCYRARVFGDVSQ 412 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 D LE L GVT++ ER++ W+++ L+EGRNR+ Sbjct: 413 DQLEELIEGVTIDGIHY---------------GSIDANLERRTGRNGWVEMKLHEGRNRE 457 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VRR+ ++G RLIR + G + L +L G EV Sbjct: 458 VRRVLGYLGLQVSRLIRISYGPFLLGDLPVGAVEEV 493 >UniRef50_A3M7K0 Pseudouridine synthase n=13 Tax=Acinetobacter RepID=A3M7K0_ACIBT Length = 262 Score = 202 bits (515), Expect = 6e-51, Method: Composition-based stats. Identities = 95/178 (53%), Positives = 122/178 (68%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++ NKPYDVL QF + T+ +F+ + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVILNKPYDVLSQFRKDEAHMTVSDFVDDPTLRIAGRLDMDSEGLVFLTDHGGLNQFIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T++ALE LR GV LNDG TLPA A V EP WLW R+PP+R Sbjct: 62 NPANKKYKTYLVQVDGDVTEEALEQLRKGVELNDGMTLPAKAIKVSEPEWLWDRDPPVRY 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD--NLANGEWREV 215 R SIPTSW++I++ EGRNRQVRRMT+ VGFPTLRLIR +G L L GE +E+ Sbjct: 122 RASIPTSWIEISICEGRNRQVRRMTSAVGFPTLRLIRTKIGTIDLVQLGLQPGETKEI 179 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 202 bits (514), Expect = 7e-51, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 26/218 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRK 61 + ++ + +V + + + + +L NKP + +DE GR Sbjct: 40 RVSVNGTVVTG---MGSKVCAGDTVLFDGKPVHPEARKCYVLLNKPAGFVCTLSDEKGRP 96 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T + + + +Y GRLD S G ++ TN+G A++ P + K Y ++ Sbjct: 97 TAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGDFAAKIEHPSAQIEKEYVIETTQDFP 156 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L G+ ++ R ++ L+I L EG+NR Sbjct: 157 PELLTRFERGIRVDGIFYK-------------------CRSAAAVNRRKLRIVLVEGKNR 197 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++RR+ RL+R +G+ L L GE+R++T Sbjct: 198 EIRRVLDSFNCTIKRLVRVRIGNLELGTLKAGEFRDLT 235 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 202 bits (514), Expect = 8e-51, Method: Composition-based stats. Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 26/218 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + ++++ + ++ R IL NKP + D+ G +T+ Sbjct: 30 VTVNGSPVKRSDTKI--DTGADDVTVCGNAISSERFRYILLNKPKGYVSSTDDKDG-ETV 86 Query: 64 KEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +P + G++ AGRLD+DS G L++T++GAL R+ P KIY ++ Q Sbjct: 87 IKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGALAHRICSPNNHISKIYAAELSRPFEQ 146 Query: 120 DALEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + +E G+ L +G P + + L + L+EG Sbjct: 147 EYVEKFAKGIVLANGEACSPCKVQKAENADNLAF-----------------VELHEGMYH 189 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 QV+RM A VG L R ++G L +L G+ + Sbjct: 190 QVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYL 227 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 202 bits (514), Expect = 8e-51, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 88/217 (40%), Gaps = 24/217 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + + + + I NKP + + Sbjct: 35 RVAVNGQVVTELGTKV--DPESDDVMFDGHRVTLAESHVYIALNKPPGYVTSCL-QKQET 91 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ E + Q V+ GRLD+ S GLL++T++G L RL+ P K Y V + + Sbjct: 92 TVMELVAVDQRVFPVGRLDKPSCGLLLMTSDGGLHQRLSHPSFDHEKEYDVACDRPVSDA 151 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+A+R G+ + T PA + + + I L EGRNRQ+ Sbjct: 152 DLDAMRRGMVITGRKTRPAKVKRLSDRR-------------------FLIILQEGRNRQI 192 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RRM +G + L R + L +LA G WR +T+ Sbjct: 193 RRMAEMLGNRVVLLRRIRIAHIHLGDLAEGRWRYLTE 229 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 202 bits (514), Expect = 9e-51, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 96/221 (43%), Gaps = 23/221 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQF-TDEAGR 60 + ++ T++ + K + + + + KP L D GR Sbjct: 27 KVKVNGKTVKNLGLKIDPKK--DVVEVEGKIVKPTEKKIYLAIYKPVGYLSAVGKDRFGR 84 Query: 61 KTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 KTL +F+ ++ GRLD +SEGLL+LTN+G ++ P K+Y V+V G Sbjct: 85 KTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDGEFANKVAHPRNEIKKVYKVKVAGE 144 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 +Q+ L+ + G L DG P +++ ++ +WL + ++ G+ Sbjct: 145 VSQETLKKMEEGTILEDGFFKPDKIKML---------------KREEDGTWLLVEIHSGK 189 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R +RR G RLIR +G + NL ++R +++ Sbjct: 190 KRIIRRFMDSFGHRVKRLIRVKIGSIDIGNLKPFDYRYLSE 230 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 101/216 (46%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + VK P+ + TR+ LF+KP + D GR+ Sbjct: 209 RVKVNGKIIDSPAL---DVKPTDRIEVDGALLPQAERTRLWLFHKPAGTVTTNKDPEGRR 265 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V + GRLD ++EGLL+LTN+G L L P + Y V+ G TQ Sbjct: 266 TVFDMLPEDMPRVLSIGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGSITQ 325 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ LRNG++++ A L +R+ W+ + L EG+NR+ Sbjct: 326 AKLDELRNGISVDGVFYGAIEATL---------------DREQGSNVWITLGLREGKNRE 370 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+ + +G RLIR + G + L +LA G REV Sbjct: 371 VKNVLGALGLEVNRLIRLSYGPFQLGDLAEGSVREV 406 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 95/223 (42%), Gaps = 23/223 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-----ENQPTRVILFNKPYDVLPQFTDE 57 + + + ++ + P +++++KP + D Sbjct: 34 RLKVDGRV----AELGQKISGNERLSLDGKPLRIAVEHKNPHMILMYHKPAGEICTRKDP 89 Query: 58 AGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 GR ++ + +P A GRLD ++ GLL+ TN+GAL +L P + Y+V+V Sbjct: 90 EGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTNDGALANQLMHPSAEIEREYWVRVA 149 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 G T++ L ALR G+ L+DG + E + + +TL E Sbjct: 150 GEVTEEMLTALRQGIPLDDGLARFTEI----------CPLKTLHEDDTQFNRYFSVTLKE 199 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 GRNR+VRR+ VG RL R G SL +L+ G R +T Sbjct: 200 GRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLT 242 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 201 bits (512), Expect = 1e-50, Method: Composition-based stats. Identities = 59/215 (27%), Positives = 95/215 (44%), Gaps = 21/215 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + ++ +V ++ R E + +L +KP + T+ Sbjct: 29 KVRVLGQVVKDP---GFRVPEGAALEVEGRPLEVRRHLHVLLHKPPGFVTSRTEGPSVYA 85 Query: 63 LKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDAL 122 L + P + + GRLD+D+EGLL+ T +G L RLT P + K Y V +E Sbjct: 86 LLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLLLHRLTHPRHKVAKRYLVHLERPVGPKDQ 145 Query: 123 EALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRR 182 EA R G+ L+ TLPA +++P +W ++ L EGR Q++R Sbjct: 146 EAFREGILLDGKKTLPAELTPLEDP------------------TWAEVVLKEGRFHQIKR 187 Query: 183 MTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 M G LRL R A+G L +L G+ R +T+ Sbjct: 188 MFRARGNRVLRLKRLALGPLELGDLPPGKARPLTE 222 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 99/216 (45%), Gaps = 16/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + +V+ + E + TRV ++KP ++ D R Sbjct: 49 RVALNGEVLTTPAI---KVRPGDILTVDGKMIDEPEATRVFRYHKPSGLMTTHNDPKQRP 105 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + + GRLD +SEGLL+LTN+GAL L P + Y + G TQ Sbjct: 106 TVFQALPRDLPRLISVGRLDLNSEGLLLLTNDGALSRALEMPQNAWVRRYRARAFGDTTQ 165 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L++G T+ P A L + + W+ +TL EG+NR+ Sbjct: 166 AKLDKLKDGCTVEGVRYGPIEARL----------DKAQEKAGGGKNIWITLTLSEGKNRE 215 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VRR+ +G RLIR + G ++L L G+ EV Sbjct: 216 VRRVLESIGLKVNRLIRLSYGPFALGTLLPGQVEEV 251 >UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas RepID=B4W9R3_9CAUL Length = 519 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 12/216 (5%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V R + Q TRV ++KP +L +D GR Sbjct: 111 KVAVNGRILDTPATL---VTRDDVITVDGKPIGSTQATRVWRYHKPAGLLTSHSDPTGRP 167 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V + GRLD +EGLL+LTN+G L L P + Y + G TQ Sbjct: 168 TVFDALPAGLPRVISVGRLDLATEGLLLLTNDGELSRALELPATSLVRQYRARARGKITQ 227 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+ L++GV ++ P A L + + ++ W+ +++ EG+NR+ Sbjct: 228 EQLDKLKDGVVVDGVSYGPIEATL------DKAKESKSEDGRAPANLWISVSITEGKNRE 281 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VR++ VG RLIR A G + LD L G EV Sbjct: 282 VRKVLESVGLTVNRLIRLAYGPFRLDVLPIGSVEEV 317 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 62/225 (27%), Positives = 99/225 (44%), Gaps = 25/225 (11%) Query: 1 MRQFIISENTMQKTSFRNHQVKRFS----SQRSTRRKPENQPTRVILFNKPYDVLPQFTD 56 M++ I S + ++ H + E+ + L NKP V+ TD Sbjct: 18 MKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRMEDNSQKYYLLNKPKGVITATTD 77 Query: 57 EAGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQV 113 T+ + + G+Y GRLDRD+EGLL++TNNG L RL P + K YYV+V Sbjct: 78 SQ-LPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNGPLGYRLLNPIQHIEKEYYVEV 136 Query: 114 EGIPTQDALEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 G ++ +G+ +DG PA +++ S S +T+ Sbjct: 137 NGPLDNSCIQRFYDGIMFHDGTICKPAKLSILES---------------SPSFSKATVTI 181 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 EG+ Q+++M VG L R G++ LD L+ GE+R + Sbjct: 182 SEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLN 226 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 67/216 (31%), Positives = 96/216 (44%), Gaps = 19/216 (8%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 ++ + + + V + +L NKP L TD R T+ Sbjct: 31 VSVNGQRVTELGTKV--VPGRDRVSVRGEAVYPEEPFYVLLNKPKGCLTAVTDPENRPTV 88 Query: 64 KEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 E++ V GRLD SEG+L+LTN+G L ARL P K Y+V+V T+ Sbjct: 89 MEYLHGLPARVVPVGRLDFYSEGVLLLTNDGDLSARLQSPRHHVEKTYHVKVRDQVTERH 148 Query: 122 LEALRNGVTLNDGP-TLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE LR GV L DG T PA +++ WL ITL EG++RQ+ Sbjct: 149 LEVLRQGVRLEDGTVTRPAQIDMLG--------------GTKSRHDWLVITLTEGKSRQI 194 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RM +G+ ++L R A G + L G+ RE+T Sbjct: 195 HRMLGVLGYTVMKLQRVAFGGLTFHGLRVGDARELT 230 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 98/219 (44%), Gaps = 24/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V K + TR+ LF+KP ++ D GR Sbjct: 115 RVSVNGTVLTQPGV---SVSDEDVILVDGEKLAARGHTRLFLFHKPRGLVTTNHDPEGRP 171 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ +++ V + GRLD ++EGLL+LTN+G L L P + Y V+ +G Sbjct: 172 TVFDYLHERHPDMPRVLSIGRLDINTEGLLLLTNDGGLSRLLELPTTGWVRRYRVRAKGT 231 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 Q L+ LR G+T++ +R+ SWL ++L EG+ Sbjct: 232 TDQAVLDQLRQGITIDGIHYAGMEVTF---------------DREQGANSWLTLSLREGK 276 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 NR+V+R+ +G RLIR + G + L +L G+ EV Sbjct: 277 NREVKRVLEQIGLEVNRLIRLSFGPFQLGDLPEGDVTEV 315 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 103/216 (47%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ N + +F V + + P + TR+ LF+KP + D GRK Sbjct: 62 RVSVNGNVLDTPAFT---VTQKDKVYVDGKPLPTRERTRLWLFHKPRGTVTTNKDPEGRK 118 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V GRLD ++EGLL+LTN+G L + P + Y V+ G TQ Sbjct: 119 TVFDILPKDMPRVVTVGRLDINTEGLLLLTNDGGLSRVIELPATGWLRRYRVRAFGKVTQ 178 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+AL++GV ++ A L + + WL I L EG+NR+ Sbjct: 179 EQLDALKDGVAIDGVLYGAIEATL---------------DTEKGDNVWLTIGLREGKNRE 223 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+R+ H+ RLIR + G + L +L GE +E+ Sbjct: 224 VKRILEHLDLSVNRLIRISFGPFQLGDLGEGELQEI 259 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 93/221 (42%), Gaps = 27/221 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ +K Q+K + Q ++ NKP V+ TD+ T Sbjct: 26 RVQVNGAVCKKGDT---QLKDTDTVAVDGALLTYQKFVYLMLNKPEGVVSASTDKRD-TT 81 Query: 63 LKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + + P + ++ AGRLD+ S G ++LT++G + P K Y V ++ T Sbjct: 82 VVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGFAHDILSPRHHVSKTYTVTIDTPLT 141 Query: 119 QDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 Q+ GVTL DG L PA + +++ L +G Sbjct: 142 QEMCTGFAAGVTLADGTALSPAEVTALSPDGL-----------------TVRVVLRQGVY 184 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVTD 217 Q++RM G L R A+G +LD LA G+WRE++D Sbjct: 185 HQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSD 225 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 200 bits (510), Expect = 2e-50, Method: Composition-based stats. Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 24/222 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK----PENQPTRVILFNKPYDVLPQFTDEA 58 + I+ ++ + H K R+ +N+ + KP V+ D Sbjct: 49 EVTINGKSVTQPGIYIHPDK--DIIALHGRRVDIQLKNKKYYYLSMYKPIKVISSVKDPQ 106 Query: 59 GRKTLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 R T+ +FIP +Y GRLD SEGLL++TN+G L RLT P K+Y+V + Sbjct: 107 NRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLITNDGELTQRLTHPRYHISKVYHVLIR 166 Query: 115 GIPTQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 L+ + G+TL+DG PA ++ T+WL+ITL Sbjct: 167 ERILNTTLKNISKGITLSDGTKLPPAKVRVLSS-------------ITETNTTWLEITLQ 213 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 +G NRQ+RRM +G L+LIR G+ +L NL GE R + Sbjct: 214 QGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQPGEVRPL 255 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 27/222 (12%) Query: 4 FIISENTMQKTSFRNHQVKRFS-SQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 I+ ++ S +V+ + + + NKP VL D +KT Sbjct: 27 VKINGEIVKDPS---MEVQPGNSEIVYKDEPIHYEEFSYYMMNKPVGVLSSTED-RKQKT 82 Query: 63 LKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + ++ GRLD+DSEGLL++ N+GAL +L P K Y V++ G ++ Sbjct: 83 VLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALAHKLLSPKMHIEKKYLVEIPGKISE 142 Query: 120 DALEALRNGVTLN-DGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L+ LR G+ + D +PA A + + S +++ + EG+ Sbjct: 143 EELDRLRQGIQYDTDLIAMPAKARCLSS---------------TEEGSRVEVIIMEGKFH 187 Query: 179 QVRRMTAHV--GFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 Q+++M + + +L R +MG LD LA GE+R++++ Sbjct: 188 QIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSE 229 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 200 bits (509), Expect = 3e-50, Method: Composition-based stats. Identities = 60/220 (27%), Positives = 86/220 (39%), Gaps = 22/220 (10%) Query: 3 QFIISENTMQ---KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 + + + + R Q + + RV+++ KP L +D G Sbjct: 101 RVSVEGKIATLGDRIDVHSGVKVRIDGQIINLSHTQKEICRVLMYYKPEGELCTRSDPEG 160 Query: 60 RKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 R T+ + +P A GRLD ++ GLL+ T +G L RL P + + Y V+V G Sbjct: 161 RATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTDGELANRLMHPSREVEREYSVRVFGQ 220 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 L LR GV L DG + W +TL EGR Sbjct: 221 VDDAMLARLRKGVQLEDGLANFKEIKFTGGVGI---------------NQWYDVTLMEGR 265 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 NR+VRR+ G RLIR G+ L L G W E+ Sbjct: 266 NREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEM 305 >UniRef50_A2S4Y2 Pseudouridine synthase n=7 Tax=Burkholderiales RepID=A2S4Y2_BURM9 Length = 235 Score = 200 bits (509), Expect = 4e-50, Method: Composition-based stats. Identities = 98/211 (46%), Positives = 132/211 (62%), Gaps = 8/211 (3%) Query: 12 QKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI 67 + S ++ F+ +R RR E P R+I NKP+ + QF+ R +L +++ Sbjct: 13 TRRSVLCIKIPPFAIERGPRRAAPLPREPCPMRLIALNKPFGTICQFSAHETRASLGDWV 72 Query: 68 PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRN 127 GVY AGRLD DSEGLL+LT++GALQA++ +P + K Y+ QVEG P AL AL Sbjct: 73 KTPGVYPAGRLDADSEGLLLLTDDGALQAKIAEPRHKLVKRYWAQVEGAPDAAALAALER 132 Query: 128 GVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHV 187 GV L D + P A + P LWPRNPPIR R +IPT+W+++ + EG+NRQVRRMTA V Sbjct: 133 GVDLGDYVSRPCRARFITPPGALWPRNPPIRHRAAIPTAWIELEIAEGKNRQVRRMTAAV 192 Query: 188 GFPTLRLIRYAMGDY---SLDNLANGEWREV 215 GFPTLRL+R +G +L LA GE RE+ Sbjct: 193 GFPTLRLVRVGIGALDVFALG-LAPGETREL 222 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 64/216 (29%), Positives = 99/216 (45%), Gaps = 17/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + I+ + + +V+ E +P RV ++KP ++ D GR Sbjct: 176 RVAINGQVLTTPAV---KVEPGDILTVDGAVVGEPEPVRVFRYHKPVGLVTTHKDPQGRP 232 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ E +P + + GRLD +SEGLL+LTN+G L L P + Y + G TQ Sbjct: 233 TVFEALPEGLPRLISVGRLDLNSEGLLLLTNDGGLARALELPATGVVRRYRARAHGRITQ 292 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + L+ L++G+T+ A L +E WL +TL EG+NR+ Sbjct: 293 ERLDTLKDGITVEGVRYGAIEARL-----------DKAKEGHQGANLWLTVTLQEGKNRE 341 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VRR+ +G RLIR + G ++L L GE EV Sbjct: 342 VRRVLEALGLKVNRLIRLSYGPFALGTLDVGEIEEV 377 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 30/221 (13%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ T+ + R + P V++ +KP +D + Sbjct: 40 RVTLADGTVLDDGTKAAH----DDIRVDGEPLDPPPGLVLMLHKPEGYTCSTSDPG--RI 93 Query: 63 LKEFIPVQGVY------AAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 + E +P + ++ GRLDRDS GLL+LT++G L R+T P + K Y V + Sbjct: 94 VYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGPLAHRITSPKRHVPKTYEVTLARP 153 Query: 117 PTQDALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 + + +G + L T A AELV +IT+ EG Sbjct: 154 LSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTA-----------------RITITEG 196 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R QV+RM A VG RL R A+G L +LA G+WR ++ Sbjct: 197 RYHQVKRMFAAVGNHVERLHRAAIGGLDLGDLAEGQWRPLS 237 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 89/218 (40%), Gaps = 26/218 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-TRVILFNKPYDVLPQFTDEAGRK 61 + ++ T+ + +V + I+ NKP + D Sbjct: 32 RVTVNGETVFEP---GFRVAPGDRVEYDGVPVLAEERKVYIMLNKPRGYVCTNADPHADL 88 Query: 62 TLKEFI---PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + I P +++AGRLD+DSEGL++ +N+G ARLT P K+Y V+V Sbjct: 89 KAVDLIRLTPPLRLFSAGRLDKDSEGLILFSNDGDYVARLTHPRHEILKVYQVRVRREFK 148 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 LE +R GV + ITL EG+NR Sbjct: 149 PAELEQMRRGVLERGELLKVHAVSRCGD-------------------CTYLITLNEGKNR 189 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++RR+TA +G PT RL R +G L L G WRE+T Sbjct: 190 EIRRLTAALGSPTRRLKRLQIGALRLGGLPVGNWRELT 227 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 63/217 (29%), Positives = 101/217 (46%), Gaps = 22/217 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT--RVILFNKPYDVLPQFTDEAGRK 61 + + + +V +P + + LF KP V+ D GR Sbjct: 52 VTVDGEVVTEP---GTRVDPKHQVILVDGRPLPREPETFLFLFYKPKGVVSTLFDPEGRP 108 Query: 62 TLKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 TL+++ P + + GRLD +EG L+LTNNG L R+ P + Y V+++G + Sbjct: 109 TLRDYFPGIDPLLHIGRLDFQTEGALLLTNNGDLSQRILHPRFEIPRTYLVKIQGGMSPA 168 Query: 121 ALEALRNG-VTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 LE + G + L+ P +P + ER++ +W +ITL EGRNR+ Sbjct: 169 HLERMARGEIRLDGRPVVPLEL---------------VPERQTSTNAWYRITLTEGRNRE 213 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 VRR+ + + L+L+R A G +L L GE+R VT Sbjct: 214 VRRLFETLNYFVLKLVRTAFGPLTLAGLEPGEYRTVT 250 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 199 bits (508), Expect = 4e-50, Method: Composition-based stats. Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 28/224 (12%) Query: 1 MRQFIISENTMQ----KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTD 56 +++ I ++ S +++ + K E + R + NK + D Sbjct: 18 VKKLISNDEITVNGFNDISAKDNIDENSDIIEYNGEKLEYKEFRYYIMNKKAGYITATED 77 Query: 57 EAGRKTLKEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQ 112 T+ + +P + + GRLD+D+EGLL+ TN+G L RL P K+YY++ Sbjct: 78 -FKENTVMDLLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGKLNHRLLSPKNHIDKVYYIE 136 Query: 113 VEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 +E + L GV + + T PA E + + + + +T+ Sbjct: 137 IENNILDKDILKLEQGVDIGNYITQPAKVEKISD-------------------NKIYLTI 177 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 EG+ QV++M V L R + G LD+LA GE +EV Sbjct: 178 KEGKFHQVKKMLEAVNNKVCYLKRVSFGKLKLDDLALGEVKEVN 221 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 26/224 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPT-RVILFNKPYDVLPQFTDEAGRK 61 + ++ + + F S + K +N+P +L NKP DVL D GRK Sbjct: 28 RVSVNGKVA-NLGDKADPQQDFLSVDGKQIKADNRPRDIYLLVNKPRDVLSTCDDPRGRK 86 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ + +P +G++ GRLDR+S G L+LTN+G L RLT P K Y V +EG Sbjct: 87 TVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTNDGELTLRLTHPRYHLPKTYDVWLEGN 146 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 P+ + LE R+G+ L+ TLPA E++ E L +TL EGR Sbjct: 147 PSDEDLEKWRSGMMLDGKKTLPATLEVISENKDQIH---------------LLVTLTEGR 191 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDN----LANGEWREVT 216 NRQ+RR+ +G L+L R +G L L +G++R ++ Sbjct: 192 NRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLS 235 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V + P + TR+ L++KP ++ D GR Sbjct: 128 RVELNGKLLTTPAVT---VTPDDKVVVDGQPLPMRERTRLWLYHKPRGLVTTNKDPEGRP 184 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ E +P V GRLD ++EGLL+LTN+G L L P + Y V+ G TQ Sbjct: 185 TVFERLPDDLPRVLTVGRLDINTEGLLLLTNDGGLARVLELPATGWLRRYRVRAFGKVTQ 244 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L++G+ + A L +++ W+ + L EG+NR+ Sbjct: 245 PDLDTLKDGIAIEGVLYGAIEATL---------------DKEQGNNVWMTVGLREGKNRE 289 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 V+R+ H+G RLIR + G + L +L G+ RE+ Sbjct: 290 VKRVLEHLGLAVNRLIRLSYGPFQLMDLPEGDVREI 325 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 199 bits (507), Expect = 5e-50, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 25/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ K + +V + +N+ ++LFNKP ++ + Sbjct: 39 RITVNG----KKAESGQKVSLEDEICADNIPVHKNEKKVLLLFNKPRGIVCSTKQQFDET 94 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ +++ VY GRLD++S+GLL+LTN G L ++ + G K Y+V V ++ Sbjct: 95 TVTDYLDYPLRVYPVGRLDKESQGLLLLTNEGDLVNKIMRAGNYHEKEYFVTVNKPVDRE 154 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 + + GV + D T P E + +I L +G NRQ+ Sbjct: 155 FVRRMSKGVPVLDTVTRPCRVVQTGECS-------------------FRIILTQGLNRQI 195 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM ++G+ +L R + + +LD + GE+RE+T Sbjct: 196 RRMCRYLGYEVQKLKRIRIMNLTLDGIREGEYREIT 231 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 199 bits (507), Expect = 6e-50, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 96/223 (43%), Gaps = 25/223 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEA 58 + I+ + +V+ R + ++ RVI+++K + D Sbjct: 478 RVSINGAV----AELGARVRPGDKVRVDSKPVLIRWPDRLPRVIVYHKQEGEIVTRDDPE 533 Query: 59 GRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 GR T+ + +P A GRLD ++ GLL+ T +G L R+T P + Y V+V G Sbjct: 534 GRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSGDLANRMTHPSFEVEREYAVRVLG 593 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T + ++ GV L+DGP +++ W ++ + EG Sbjct: 594 KLTPEQMKETTAGVQLDDGPASFQFIR-------------EDDDKEDSVNHWYRVGIREG 640 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 RNR+VRRM H G RL+R G +L L G++ E+ + Sbjct: 641 RNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNE 683 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 99/216 (45%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRK-PENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V + PE + TR+ L++KP ++ D GR Sbjct: 501 RVAVNGRVIDSPAL---DVTYSDVITVDGKPLPERERTRLFLYHKPRGLMTTHADPEGRP 557 Query: 62 TLKEFIPV--QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + + GRLD ++EGLL+LTN+G L L P + Y V+ G TQ Sbjct: 558 TVFDNLPEDLPRLISIGRLDFNTEGLLLLTNDGGLARALELPETGWLRRYRVRAHGEVTQ 617 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L +GV ++ P A+L ER WL + EG+NR+ Sbjct: 618 AQLDQLASGVEVDGVKYGPIEAKL---------------ERDQGANVWLVFAIREGKNRE 662 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VR + AH+G RLIR + G + L + G+ EV Sbjct: 663 VRNVLAHLGLEVNRLIRVSYGPFQLLEIEEGQVEEV 698 >UniRef50_Q3AI58 Pseudouridine synthase n=5 Tax=Cyanobacteria RepID=Q3AI58_SYNSC Length = 230 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 93/185 (50%), Positives = 114/185 (61%), Gaps = 10/185 (5%) Query: 42 ILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 +L NKPY VL QFT E G + L +F+ V VYAAGRLD DSEGLL+LT+NG LQ RLT Sbjct: 19 LLLNKPYGVLSQFTSEEGSRWRCLSDFVDVPQVYAAGRLDADSEGLLILTSNGRLQQRLT 78 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELV--DEPAWLWPRNPPI 157 P + Y+ QVEG P + L+ L +GV + TLPA A + + L R P I Sbjct: 79 DPRFGHWRSYWAQVEGTPNTEQLQQLCDGVVVQGRRTLPAKARWLQGQDLPQLPERTPQI 138 Query: 158 RERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMG------DYSLDNLANGE 211 R R +IPT+WL+++L EGRNRQVRRMTA VG PTLRL+R + L L G Sbjct: 139 RFRAAIPTNWLQLSLSEGRNRQVRRMTAAVGLPTLRLVRCCIDLMDNGPPLDLTGLQPGS 198 Query: 212 WREVT 216 WR VT Sbjct: 199 WRTVT 203 >UniRef50_Q6FCZ3 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q6FCZ3_ACIAD Length = 264 Score = 199 bits (506), Expect = 7e-50, Method: Composition-based stats. Identities = 99/178 (55%), Positives = 125/178 (70%), Gaps = 2/178 (1%) Query: 40 RVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++++FNKPYDVL QF +++ T+ FI + AGRLD DSEGL+ LT++G L +T Sbjct: 2 KIVVFNKPYDVLSQFREDSAHLTVSSFIADPELRIAGRLDLDSEGLMFLTDHGGLNQYIT 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRE 159 P + K Y VQV+G T+DALE LR GV L DG TLPA A V+EP WLW RNPP+R Sbjct: 62 HPSNKKYKTYLVQVDGDITEDALEKLRKGVELADGLTLPAQATKVEEPEWLWERNPPVRF 121 Query: 160 RKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD--NLANGEWREV 215 R SIPTSW++I++ EGRNRQVRRMTA VGFPTLRLIR +G +L L GE +E+ Sbjct: 122 RASIPTSWVEISICEGRNRQVRRMTATVGFPTLRLIRTQIGSINLVKLGLQPGEQKEI 179 >UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter RepID=Q6F9V5_ACIAD Length = 239 Score = 198 bits (505), Expect = 8e-50, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 94/218 (43%), Gaps = 23/218 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 I + + +R H + F+ Q + + I+ NKP +++ Sbjct: 31 VSIQDEIQKDLKYRIHDLTDFNFQVFDQNYV-YREKVYIILNKPKGFECSHQ-PHHHQSV 88 Query: 64 KEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 +P + + A GRLD+D+ GLL+LT++G LT P K K+Y+V T Sbjct: 89 FSLLPDLLIQRNIAAVGRLDQDTTGLLLLTDDGQYLHTLTHPKKHVPKVYHVATIDPITV 148 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 D + L GV L++ + A + + + L +T+++G Q Sbjct: 149 DQMHQLEQGVELHNEKGVFAATNVTL-----------------LNETQLSMTIHQGVYHQ 191 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 V+RM A VG L R+ +G L NLA GEW +T+ Sbjct: 192 VKRMIAAVGNKVTALHRHKIGQLELPNLAEGEWMYLTE 229 >UniRef50_B7L2Z9 Pseudouridine synthase n=4 Tax=Rhizobiales RepID=B7L2Z9_METC4 Length = 320 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 62/204 (30%), Positives = 95/204 (46%), Gaps = 19/204 (9%) Query: 18 NHQVKRF-SSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFI---PVQGVY 73 +V ++ R+ + +L NKP +L + D GRKT+ + + + + Sbjct: 62 GVRVDPQRAAICVDGRRLVSAAKVYLLLNKPRGLLTTYGDPQGRKTVYDCLAGHDLPFLA 121 Query: 74 AAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLND 133 GRLD SEGLL++TN+ RL P K+Y+VQ++ P + L LR GV + Sbjct: 122 PVGRLDCASEGLLLMTNDTRWAHRLLDPASNVDKVYHVQIDRRPDEALLTGLREGVAHDG 181 Query: 134 GPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLR 193 + R +WL++ L EGRNRQ+RRM A G LR Sbjct: 182 ERLAAKSVAPL---------------RVGERNAWLEVVLSEGRNRQIRRMMALNGAEVLR 226 Query: 194 LIRYAMGDYSLDNLANGEWREVTD 217 L+R A+G L ++ G +R +TD Sbjct: 227 LVRVAVGGVRLGDVRKGAFRHLTD 250 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 32/229 (13%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRV-ILFNKPYDVLPQFTDEAGRK 61 + + + + R ++ R + P + +L +KP V+ D GR Sbjct: 101 RVSVDGVVVTEPGVRVDPSRQ--EIRVDGSRVLTDPDVITVLLHKPAGVVTTMEDPQGRP 158 Query: 62 TLKEF--------------IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGK 107 T+ + + GRLD ++EGLL+L+N+G L RL P K Sbjct: 159 TVADLAEQFISEHRTELEHPESVRLVHVGRLDTETEGLLLLSNDGDLAHRLMHPSFEISK 218 Query: 108 IYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSW 167 Y VEG LR G+ L+DG + + S Sbjct: 219 TYVAIVEGQVEGWVPRKLRRGIELDDGLAQADRV---------------VVKDAGPSGSI 263 Query: 168 LKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 ++ITL+ G+NR VRRM VG P RL R +G + L G+ R +T Sbjct: 264 VEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIGGLRPGQMRRLT 312 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 99/216 (45%), Gaps = 24/216 (11%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGR 60 ++ ++ K + + QV+ F + + + + +++F+KP + + Sbjct: 25 KRVLVDG----KPAVQGMQVEDFQEIKVDGKAIKREEKKVLLVFHKPKGIECTANPNVKK 80 Query: 61 KTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + VY AGRLD+DSEGLL+LTN G L ++ + G K Y V V+ T++ Sbjct: 81 NVISYINYPIRVYYAGRLDKDSEGLLLLTNQGELVNQIMKAGSYHEKEYLVTVDKPVTEE 140 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L+++R GV + T E E +ITL +G NRQ+ Sbjct: 141 FLQSMREGVPVLGTITRKCKVEKESEKV-------------------FRITLTQGLNRQI 181 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RRM ++G+ ++L R + + L NL G +RE T Sbjct: 182 RRMCNYLGYEVVKLKRIRIMNIELGNLPIGSYREAT 217 >UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B5ELL5_ACIF5 Length = 268 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 18/214 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + + R R +V+L +KP VL DE GR T Sbjct: 49 RVEVDGRRILDPEARFP--LSGPGIRIDGLDITASTRQVLLLHKPRGVLTTRQDERGRAT 106 Query: 63 LKEFIP-VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + + +P + GRLD+ S GLL+ +N+ RL P + K Y+VQ+ + D Sbjct: 107 VYDLLPGSPWLAPVGRLDQASSGLLLFSNDPHWAQRLLDPDQHVAKTYHVQIRPPLSTDT 166 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + L L+ P LP + R T WL+ L EGRNRQ+R Sbjct: 167 VVQLAADSVLDGEPCLPMQIREL---------------RCGGKTQWLEFILQEGRNRQIR 211 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R+ A LRLIR A+G+ L L GEWR + Sbjct: 212 RLLAACDREVLRLIRVAVGNLPLGELRAGEWRWL 245 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 90/222 (40%), Gaps = 30/222 (13%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-PTRVILFNKPYDVLPQFTDEAGR 60 ++ + +++ +F Q++ R R + NKP + D Sbjct: 25 KRVTVDGEIIKQGAF---QLRPEHQVRFDGNLLHQILTARYFMLNKPQGYVCSTDDP-DH 80 Query: 61 KTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ FI ++AAGRLD D+ GL++LT++G RLT P K Y V +E Sbjct: 81 PTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWSYRLTSPRHHCEKDYLVTLEQPL 140 Query: 118 TQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 + G+ L PT PA + +++T+ EG Sbjct: 141 AAEITAQFAAGILLRGEKLPTRPARLATLSPL-------------------KVRLTISEG 181 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 R QV+RM A VG + L R +G LD L GE+R +T Sbjct: 182 RYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALT 223 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 198 bits (504), Expect = 1e-49, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 27/221 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP----ENQPTRVILFNKPYDVLPQFTDEA 58 + I+ T + V R R E + +V+L++KP + D Sbjct: 54 RITINGKT----AEVGASVVPSDVVRLDSRPLRLPFEPELPQVLLYHKPEGEIVSHDDPE 109 Query: 59 GRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 R ++ + +P A GRLD ++ GLL+ T +G L R P + Y V++ G Sbjct: 110 NRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTSGELANRFMHPRYEVEREYAVRIFG 169 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T+ + L G+ L+DGP + W ++ L EG Sbjct: 170 ELTEGEMAQLTYGIELDDGPANFDSIR---------------PQGGEGANHWYEVILREG 214 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 RNR+VRR+ P RLIR G +L L G+ + Sbjct: 215 RNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHL 255 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 197 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 28/222 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-----PTRVILFNKPYDVLPQFTDE 57 + ++ Q +++ R RK Q RV+++ KP + D Sbjct: 28 RVSVNGQVAQ----VGERIEPGDELRIDGRKVSFQIEDEIRRRVLIYYKPEGEICSRNDP 83 Query: 58 AGRKTLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 R T+ + +P GRLD +S GLL+ TN+G L RL P + Y V+V Sbjct: 84 ESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEVEREYAVRVM 143 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 G T + GV L+DGP + W ++ + E Sbjct: 144 GEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGI---------------NRWYQVVVKE 188 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 GRNR+VRR+ G RL+R G L L G W E+ Sbjct: 189 GRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMEL 230 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 197 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 27/222 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQP-----TRVILFNKPYDVLPQFTDE 57 + ++ + + +V + + RV+++NKP + D Sbjct: 39 RVNVNGSV----ASLGQRVDSHDAITVDGHLIRREEAAESVRRVLIYNKPEGEVCTRDDP 94 Query: 58 AGRKTLKEFIPVQG---VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 GR T+ + +P GRLD ++ GLL+ T +G L RL P + Y V+V Sbjct: 95 EGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDGELANRLMHPSYEMDREYAVRVR 154 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 G T++ +E L NGV L DGP + + W + E Sbjct: 155 GEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGF--------------NHWYHCVVME 200 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 GRNR+VRR+ G RL R G L L G +RE+ Sbjct: 201 GRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREM 242 >UniRef50_C9RMB6 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMB6_FIBSS Length = 286 Score = 197 bits (502), Expect = 2e-49, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 90/243 (37%), Gaps = 40/243 (16%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + ++ + + + + NKP + +DE GR T Sbjct: 53 RVSLRGKIVRDPDT---PARENDEICVDGKPVKASEFVYFMMNKPRGYVTTASDEKGRAT 109 Query: 63 LKEFI-----------PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKR------- 104 + + PV + GRLD SEGLL+ TN+ L + Sbjct: 110 VMDLFREQYAKMFPGKPVPHISPVGRLDAASEGLLLFTNDTQWADALLKTKDERRKTRDD 169 Query: 105 -----------TGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPR 153 KIY VQV G PT + L + G + + EP Sbjct: 170 KCVERESRGPIHTKIYRVQVNGHPTAEELSQMEAGFNVPP--------RVFGEPEEFMHA 221 Query: 154 NPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWR 213 WL+ITL EG+NR++RRM A +G+ LRL+R +Y L +L GE R Sbjct: 222 VSAKLYSAGEKNCWLEITLDEGKNREIRRMLAKLGYEVLRLVRIKFCNYELGDLKQGEIR 281 Query: 214 EVT 216 ++ Sbjct: 282 KIN 284 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 29/220 (13%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + + T ++ N QV+ S + ++ +KP VL TD + T Sbjct: 26 RVKVDGETCRQ---ANRQVEAEQSVHLDGKPVNPPGDIYLMMHKPAGVLSATTDS-SQPT 81 Query: 63 LKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +P V+ AGRLD+D+ GLL+LT++G +T P + K Y V + + Sbjct: 82 ALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWSHAVTSPRRECRKSYRVWLAEAIPE 141 Query: 120 DALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 A AL GV LN T PA + + +T+ EGR Sbjct: 142 QACRALEKGVMLNGETTETRPAEVRV-------------------HNNQLIDLTIGEGRY 182 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 QV+RM A VG L R+ +G LD+ LA GE+R +T Sbjct: 183 HQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALT 222 >UniRef50_B5INL2 Ribosomal large subunit pseudouridine synthase E n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5INL2_9CHRO Length = 243 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 99/197 (50%), Positives = 120/197 (60%), Gaps = 11/197 (5%) Query: 30 TRRKPENQPTRVILFNKPYDVLPQFTDEAGRK--TLKEFIPVQGVYAAGRLDRDSEGLLV 87 + +LF+KPY VL QFT E G + L +FI V GVYAAGRLD DSEGLL+ Sbjct: 4 GPEELPASRPTTLLFHKPYGVLSQFTPEPGSRWRCLADFIAVPGVYAAGRLDADSEGLLL 63 Query: 88 LTNNGALQARLTQPGKRTGKIYYVQVEGIP--TQDALEALRNGVTLNDGPTLPAGAELVD 145 LT NG LQ RLT P + Y+VQVEG +AL+ LR GV + T PA + Sbjct: 64 LTANGRLQQRLTDPAFGHWRTYWVQVEGEAGQRPEALQQLRQGVVIQGRLTRPALVRCLS 123 Query: 146 EPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAM------ 199 +P L R+PPIR+R +IP SWL++ L EGRNRQVRRMTA VG PTLRLIR A+ Sbjct: 124 DP-KLPERDPPIRQRATIPVSWLELQLQEGRNRQVRRMTARVGLPTLRLIRVAIDLMDGE 182 Query: 200 GDYSLDNLANGEWREVT 216 SL L G+WR V+ Sbjct: 183 APLSLSGLKPGDWRRVS 199 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 197 bits (501), Expect = 3e-49, Method: Composition-based stats. Identities = 55/195 (28%), Positives = 93/195 (47%), Gaps = 16/195 (8%) Query: 24 FSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPV--QGVYAAGRLDRD 81 + + +P R LF+KP V+ +D AGR+T+ ++ + V+ GRLD Sbjct: 47 TDKIEALGEIVKPEPLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVRERVFPVGRLDYH 106 Query: 82 SEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGA 141 SEGLL++TN+G L LT P K Y V V G ++ + + GV ++ G T P Sbjct: 107 SEGLLLVTNDGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEI 166 Query: 142 ELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGD 201 E++ + L++ L+EG+NR++R+M +P L R Sbjct: 167 EVLG-------------YDAEKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSF 213 Query: 202 YSLDNLANGEWREVT 216 +L ++ G++R +T Sbjct: 214 LTL-DVNRGQYRRLT 227 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 196 bits (500), Expect = 3e-49, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 103/222 (46%), Gaps = 10/222 (4%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ ++ ++ H + + + +P I+ NKP V+ D K Sbjct: 25 KKVSVNNVFVKDGK--IHVDEEKDIVKYENKIINYKPFVYIMMNKPAGVISATEDSH-HK 81 Query: 62 TLKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + + + ++ GRLD D+EGL++LTN+G L L P K K YYV++ Sbjct: 82 TVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGILSHNLLSPKKHVDKKYYVKITKSL 141 Query: 118 TQDALEALRNGVTL-NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSW-LKITLYEG 175 ++D ++ L NG+ L + T A E++ + + E ++ + IT+ EG Sbjct: 142 SEDDIKTLENGIKLEENFITKNAKVEIICNNSEKESEDFDFGENENNKNENSVYITISEG 201 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMG-DYSLDNLANGEWREVT 216 + QV+RM VG L L R MG +NL G +RE+T Sbjct: 202 KFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELGGYRELT 243 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 196 bits (500), Expect = 4e-49, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 24/216 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 +I + H + + ++ NKP VL D ++T+ Sbjct: 27 VMIDGKPAKDVKE--HVDPDTQEVTVYGEPVDYREFIYLMMNKPQGVLSATEDSR-QQTV 83 Query: 64 KEFIPVQGV----YAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + + + + + AGRLD+D+EG L+LTN+G L RL P K K Y V ++ ++ Sbjct: 84 VDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQLAHRLLSPKKHVPKTYEVHLKSQISR 143 Query: 120 DALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + + L GV + G T PA AE+ + + + +T+ EG+ Sbjct: 144 EDISDLETGVYIEGGYKTKPAKAEIKTNDSG---------------NTVIYLTITEGKYH 188 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWR 213 QV++M VG + L R +MG SLD LA GE+R Sbjct: 189 QVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 196 bits (499), Expect = 5e-49, Method: Composition-based stats. Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 28/222 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQ-----PTRVILFNKPYDVLPQFTDE 57 + ++ Q +++ R RK + Q RV+++ KP + D Sbjct: 28 RVSVNGRIAQ----VGERIEPGDELRIDGRKVQFQIEDEIRRRVLIYYKPEGEICSRNDP 83 Query: 58 AGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 R T+ + +P GRLD +S GLL+ TN+G L RL P + Y V+V Sbjct: 84 EKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTNDGELANRLMHPSNEIEREYAVRVM 143 Query: 115 GIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYE 174 G T + + NGV L DGP + W ++ + E Sbjct: 144 GEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGI---------------NRWYQVVVKE 188 Query: 175 GRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREV 215 GRNR+VRR+ G RL+R G L L G W E+ Sbjct: 189 GRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMEL 230 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 196 bits (499), Expect = 5e-49, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 108/219 (49%), Gaps = 19/219 (8%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ I+ + + + ++VIL NKP V+ D GRK Sbjct: 27 KRVFINNEIA-SLGEKADILIDIIRIDDYIIPKNIKSSKVILLNKPTGVISTCRDTHGRK 85 Query: 62 TLKEFIP---VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ + +P +G++ GRLD+DS G L+++NNG L LT P K Y V + G+P+ Sbjct: 86 TVLDLLPDNLQKGMHPVGRLDKDSRGALIISNNGLLTLHLTHPRFNHKKRYSVLITGVPS 145 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 ++ L+ RNG+ ++ T A +V ++ + L+I L+EGRNR Sbjct: 146 KNTLKKWRNGIEIDKKTTRKALVNIV---------------KRQGNNTLLEIVLFEGRNR 190 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 Q+R++ +G P + LIR +G+ L+ L G WRE+ + Sbjct: 191 QIRKVADKLGHPVIDLIRIEIGNIKLNGLKEGAWREINE 229 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 196 bits (499), Expect = 5e-49, Method: Composition-based stats. Identities = 60/212 (28%), Positives = 97/212 (45%), Gaps = 21/212 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ +F+ R + PTRV ++KP +L +D GR Sbjct: 42 RVSVNGEILRTPAFKVMA---GDDVRVDGESIGQRPPTRVWRYHKPVGLLTTHSDPQGRD 98 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P V + GRLD +SEGLL+LTN+G L L P + Y V+ G + Sbjct: 99 TVFQTLPQDMGRVISVGRLDLNSEGLLLLTNDGELARVLELPSTGWTRRYRVRAYGNASD 158 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 AL L NG ++ P + +R++ WL + + EG+NR+ Sbjct: 159 KALAELENGTVVDGVVYGPVEVTV---------------DRRTGANVWLTVGIKEGKNRE 203 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGE 211 VR++ VG RL+R A G + L +L GE Sbjct: 204 VRKVLQSVGLTVNRLMRVAYGPFQLGSLKRGE 235 >UniRef50_B2ULL1 Pseudouridine synthase n=4 Tax=Bacteria RepID=B2ULL1_AKKM8 Length = 188 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 41 VILFNKPYDVLPQFTDEA-GRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLT 99 ++ FNKPY +L QFT EA +TL EF GVY GRLD DSEGLL+L++ L RL Sbjct: 2 ILAFNKPYGILSQFTKEAPHHRTLAEFGFPPGVYPVGRLDADSEGLLLLSDEKGLADRLL 61 Query: 100 QPGKRTGKIYYVQVEGIPTQDALEALR-NGVTLNDGPTLPAGAELVDEPAWLWPRNPPIR 158 P R + Y+ QVEG P++ L L G+ + TLP A L+ + PR PP+R Sbjct: 62 NPSGRHPRTYWSQVEGTPSETDLRPLELGGLRIRGHCTLPCRARLMRREPDVPPRIPPVR 121 Query: 159 ERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 R SIPTSWL++TL EG+NRQVRRMTA +GFPTLRL+R +G++SL L G W+E+ Sbjct: 122 YRASIPTSWLELTLVEGKNRQVRRMTAAIGFPTLRLLRARIGNFSLAGLKPGAWKEL 178 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 96/218 (44%), Gaps = 21/218 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRS-TRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 + + + V S + L NKP D L DE R Sbjct: 28 RVTVDGERVT---ALGATVDAGKSVIYCDGMPIRPEAKIYYLLNKPKDCLCTNYDELNRL 84 Query: 62 TLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + I Q +Y GRLD+ SEGL+++TN+G L +L+ P K Y+++++G + Sbjct: 85 RAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELSNKLSHPKYEVNKTYFIEIDGYLSN 144 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 + + AL++GV L G T P + + +S S ++ L EG+NR+ Sbjct: 145 ETITALQSGVWLAFGKTQPVRIKKM---------------HRSFKKSRFEMILCEGKNRE 189 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +RRM A G L R +G +L G++R++T+ Sbjct: 190 IRRMLADHGHKVRTLRRIKIGSLCDPDLKVGKYRKLTE 227 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 24/219 (10%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V E TR+ LF+KP ++ D GR Sbjct: 50 RVALNGAILISPAIN---VGPDDVILIDGAPLAERARTRLFLFHKPRGLVTTEHDPEGRP 106 Query: 62 TLKEFIPV-----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ +++ + + GRLD ++EGLL+LTN+G L L P + Y V+ +G Sbjct: 107 TVFDYVREHSPEAPRLVSIGRLDINTEGLLLLTNDGGLARVLELPATGWARRYRVRAKGS 166 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 Q L+ LR GVT+ + +R WL ++L EG+ Sbjct: 167 IDQPTLDRLRQGVTVEGVDY---------------AQIEATLDRIQGANCWLTMSLREGK 211 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 NR+++R+ H+G RLIR + G + L +L G+ EV Sbjct: 212 NREIKRVLEHLGLEVNRLIRLSYGPFQLADLEEGKVEEV 250 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 196 bits (498), Expect = 6e-49, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 83/216 (38%), Gaps = 24/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRK 61 + ++ +V + + P R I +NKP + + Sbjct: 30 RVTVNG----IRPEMGVKVSSTDVVLVDGKTLKAIPKRVYIAYNKPVGITCTTERKIQSN 85 Query: 62 TLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 +K ++ GRLDR SEGL+ LTN G + ++ + G K Y V V+ + Sbjct: 86 IVKAVNYPDRIFPIGRLDRPSEGLIFLTNEGDIVNKILRAGNNHEKEYVVTVDKPLNRQF 145 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 + + NGV + D T I L +G NRQ+R Sbjct: 146 VAKMGNGVPILDTITKKCKVT-------------------QTGAQQFTIILTQGLNRQIR 186 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 RM ++G+ + L R + + +L L G+WR +T+ Sbjct: 187 RMCEYLGYEVVTLKRVRIMNVTLKGLKVGQWRHLTE 222 >UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=Q14P18_SPICI Length = 267 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 91/220 (41%), Gaps = 18/220 (8%) Query: 2 RQFIISENTMQKTSF---RNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEA 58 + II +V + + EN ++ NK + + D Sbjct: 20 EELIIQGRVKVNNVVVTTLGTKVGKNDQINNQILMNENSNKIYLMLNKRRNCVSTMYDPQ 79 Query: 59 GRKTLKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 RKT+ ++ + +Y GRLD D+ GLL+LTN+G +T P K Y+V + G Sbjct: 80 HRKTVLTYVKGISERIYPVGRLDYDTSGLLLLTNDGEFTNIITHPSHIINKTYHVLLSGY 139 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 ++ L+ L G+ + G + ++ + S L +T++E Sbjct: 140 LSKQQLQQLATGIEIEPGIIR------------SQAQAKLVKYEEVKNVSILLLTIHEVT 187 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREV 215 QV++M +G ++L R A+G LD L GEWR + Sbjct: 188 KHQVKKMIQSLGHEVIKLKRIAIGFLQLDETLKPGEWRYL 227 >UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKU3_9CAUL Length = 489 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 16/216 (7%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + V + + +PTRV ++KP ++ D GR Sbjct: 71 KIAVNGRLLDTPATT---VSPDDLITVEGKPIRKAEPTRVWRYHKPVGLMTTHQDPQGRP 127 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ +P + V + GRLD +SEGLL+LTN+G L L P ++Y V+ G TQ Sbjct: 128 TVFNSLPQELPRVISVGRLDINSEGLLLLTNDGELARALELPTTGWTRVYRVRALGRTTQ 187 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 +AL+ L+ GVT+ P A+L + + W+ ++L EG+NR+ Sbjct: 188 EALDTLKTGVTVEGVQYGPIEAKL----------DKAQEKADGRANLWITVSLNEGKNRE 237 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 VR++ +G RLIR A G + L ++ GE E+ Sbjct: 238 VRKVLDSLGLKVNRLIRLAYGPFQLGDIEPGEVEEI 273 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 195 bits (497), Expect = 8e-49, Method: Composition-based stats. Identities = 66/219 (30%), Positives = 100/219 (45%), Gaps = 19/219 (8%) Query: 4 FIISENTMQ--KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ +F +K Q + E QPT+VIL+NKP + DE GR+ Sbjct: 44 VKVNGKVATLGDRAFPTDTLKVND-QLVKETRLEKQPTQVILYNKPEGQVCSRKDEKGRE 102 Query: 62 TLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 T+ +P + GRLD ++ GLL+LTNNG L RL P + Y V+V G + Sbjct: 103 TIFTSLPRIINSRWISVGRLDINTSGLLILTNNGELANRLMHPSYEMEREYSVRVFGEVS 162 Query: 119 QDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 + L+ L+ GV L DG + + + + W ++ + EGRNR Sbjct: 163 DEILDRLKKGVKLEDGFAKFESIGKIPQ------------QEEDSINQWYRVVIKEGRNR 210 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 +VRR+ G RL+R G +SL NL G+ +T Sbjct: 211 EVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLT 249 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 195 bits (497), Expect = 9e-49, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 86/220 (39%), Gaps = 22/220 (10%) Query: 3 QFIISENTMQ---KTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 + + + + R + R+ Q RV+ + KP L D G Sbjct: 28 RVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEG 87 Query: 60 RKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 R T+ + +P A GRLD ++ GLL+ T +G L RL P + + Y V+V G Sbjct: 88 RPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQ 147 Query: 117 PTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 L L GV L DGP + W +TL EGR Sbjct: 148 VDDAKLRDLSRGVQLEDGPAAFKTIKF---------------SGGEGINQWYNVTLTEGR 192 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 NR+VRR+ VG RLIR GD L L G W E+ Sbjct: 193 NREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 92/226 (40%), Gaps = 26/226 (11%) Query: 1 MRQFIISENT--MQKTSFRNHQVKRFSSQRSTRRKPENQ-----PTRVILFNKPYDVLPQ 53 M + I + QK + +V++ R R + + RV+ + KP + Sbjct: 60 MEEVIKAGRVSINQKPASIGDRVEQGDEIRVDGRLIKYKSEREKRRRVLAYYKPEGEICS 119 Query: 54 FTDEAGRKTLKEFIPV---QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYY 110 D GR T+ E +P GRLD +S GLL+ TN+G L RL P + Y Sbjct: 120 ANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTNDGELAHRLMHPSNEIVREYA 179 Query: 111 VQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI 170 V++ G T + + L +GV L DG + + W + Sbjct: 180 VRILGELTPEMMRNLTDGVMLEDGLAKFEDIK---------------QGGGEGVNKWYHV 224 Query: 171 TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREV 215 L EGRNR+VRR+ G RL+R + G L L G + E+ Sbjct: 225 KLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIEL 270 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 195 bits (496), Expect = 1e-48, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + TR+ L++KP ++ +D GR Sbjct: 108 RVAVNGKVLDSP---VLNATLADRIEVDGEPIRGIERTRLWLYHKPSGLVTTNSDPEGRP 164 Query: 62 TLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 T+ + +P + V + GRLD ++EGLL+LTN+G L L P + Y V+ G Q Sbjct: 165 TVFDNLPEELPRVMSIGRLDINTEGLLLLTNDGGLARVLELPTTGWLRRYRVRAYGEIDQ 224 Query: 120 DALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQ 179 L+ L++G+ ++ + +R W+ + L EG+NR+ Sbjct: 225 AKLDTLKDGIAVDGVLY---------------GAIDAVLDRSQGHNVWITMGLREGKNRE 269 Query: 180 VRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 ++ + +G RLIR + G + L +L + +EV Sbjct: 270 IKNVLGALGLEVNRLIRISYGPFQLGDLPESQVQEV 305 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 25/220 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + +++ ++ + R R Q ++ NKP V+ D+ R T Sbjct: 28 RVLVNGTPVKAADLKV--DPEGDEIRVDGRVYGYQEHLYLMLNKPQGVVSATDDKVHR-T 84 Query: 63 LKEFIPVQ----GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + +P + G++ AGRLDRD+ G +++T++G + P K Y ++G Sbjct: 85 VLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDGEFAHNILSPRHHVPKTYEAGLDGPIG 144 Query: 119 QDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 ++ L L GV L DG PA ++ +S ++I + EGR Sbjct: 145 ENELSVLAQGVVLGDGTKCRPAELTVL----------------QSGERPLIQIVIVEGRY 188 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 Q++RM A VG L L R +G +LD +L G+ ++ Sbjct: 189 HQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAIS 228 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 22/220 (10%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 + + + + + + Q + NKP V+ TD A KT+ Sbjct: 27 ITANGEPVISGKQQINPGS--DTVFLDDVQVRYQQYFYYVMNKPVGVITATTDSAA-KTV 83 Query: 64 KEFIP----VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + ++ GRLD+D+EG+LV+TN+GAL L P K+Y +V G T Sbjct: 84 MDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGALSHDLLSPNHHVTKVYEAEVTGEITA 143 Query: 120 DALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNR 178 L +G+TL DG PA AE+V + + + ++I ++EG+ Sbjct: 144 AQLANFNDGITLKDGTELQPAQAEIV-------------QFHEIENFTTIRIMIHEGKYH 190 Query: 179 QVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 QV+RM +G + L R G +L L G +R +TD Sbjct: 191 QVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTD 230 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 63/216 (29%), Positives = 105/216 (48%), Gaps = 21/216 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 Q ++ + + V + + + Q +R+ ++ KP ++ D RK Sbjct: 27 QVKVNGIIVTSPATN---VDTDNQVEVSGSLITSSQKSRLWIYYKPVGLITTHKDPLSRK 83 Query: 62 TLKE-FIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ E + V + GRLD +SEGLL+LTNNG L + P + ++Y+V+ G P Sbjct: 84 TVFEQLTGLPRVISIGRLDLNSEGLLLLTNNGDLARQFELPSSKLKRVYHVRAYGNPDP- 142 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L++ + ++ P +L+ RK+ SWL++ L+EG+NR++ Sbjct: 143 LLKSNYKNLEIDGIFYNPQSIKLL---------------RKNSTNSWLEVILFEGKNREI 187 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RR+ H G +LIR GD+ LDNL E+REVT Sbjct: 188 RRIFEHFGLKVNKLIRTEYGDFKLDNLKPNEYREVT 223 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 66/216 (30%), Positives = 104/216 (48%), Gaps = 19/216 (8%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPEN-QPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ ++ + K R + +L +KP V+ D GR+ Sbjct: 27 RVSVNGRVQRELGTQIDPDK--DDIRVDGEQITPPTELHYVLLHKPSSVMTTLHDPEGRQ 84 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T+ + + ++ GRLD DSEGLL+LT++G L RLT P K Y + P+ + Sbjct: 85 TVADLVKSHNRLFPVGRLDYDSEGLLLLTDDGDLTFRLTHPSFEVEKEYQALLNQTPSVE 144 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L RNGV L+DG T PA EL++E + +W+++ ++EGRNRQ+ Sbjct: 145 QLREWRNGVELDDGKTAPAWIELLNE---------------TADGTWVRVVIHEGRNRQI 189 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RR+ +G RLIR G +L L G+WR +T Sbjct: 190 RRVAEALGLEVRRLIRLREGPLTLGELQAGQWRALT 225 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 194 bits (495), Expect = 1e-48, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 25/216 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + I++ K V+ ++ + + IL NKP + + + + Sbjct: 26 RIIVNG----KLCIPGQWVEESDEILLDNKRIKPKKKVYILLNKPVGITCTSSKD-IKAN 80 Query: 63 LKEFIPVQG-VYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDA 121 + +F+ + ++ GRLD+ SEGL++LTN+G L ++ + K Y V+V+ + Sbjct: 81 IIDFVNYRDYIFPVGRLDKKSEGLIILTNDGELSNKILESENMHEKEYVVKVDKPFDDEF 140 Query: 122 LEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVR 181 +E + GV L T +DE KI L +G NRQ+R Sbjct: 141 IENMSKGVQLKGVKTRTCIVRRIDE-------------------CTFKIILTQGLNRQIR 181 Query: 182 RMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 +MT G+ ++L R + + +D + G +R T+ Sbjct: 182 KMTRAFGYTVVKLKRIRIMNLKIDGIDIGSFRHFTE 217 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 95/223 (42%), Gaps = 23/223 (10%) Query: 2 RQFIISENTMQK---TSFRNHQVKRF-SSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTD 56 + I+ + +V R + + N + +KP VL D Sbjct: 64 EEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVKFNTKLVTLALHKPKRVLSAMDD 123 Query: 57 EAGRKTLKEFI--PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 GR TL++ + + ++ GRLD DSEGL+++TN+G L + P K Y VE Sbjct: 124 PKGRFTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQHVMHPKYEVEKTYIATVE 183 Query: 115 GIPTQDALEAL-RNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 G L GV L DG ++D ++ T+ +KI L+ Sbjct: 184 GKINGMVCRRLVSQGVNLEDGWIKLDRCAIID---------------QNHDTTMVKIVLH 228 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 G+NR VRR+ VGFP RL+R +G L +L G +R ++ Sbjct: 229 SGKNRIVRRIFGAVGFPVKRLVRTQIGPIKLGDLKAGSYRVLS 271 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEA-GRKT 62 ++ + F S ++ + + +KP L + G K Sbjct: 30 VTVNGRVATGPFVTVDE--EFDSVEVGGQRIGAEKKVYFMVHKPLGYLCSSERKFPGSKL 87 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + ++ GRLD+++ GL+++TN+G R+ P K Y ++V T Sbjct: 88 VIDLLSHCPYRLFTVGRLDKETSGLILVTNDGEFANRVIHPSFGITKEYLLKVSRDVTAR 147 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LE L G ++ P + V +KI + EG+ ++ Sbjct: 148 DLETLMAGTVIDGKVVRPVSVKKVRRG-------------------TIKIIVNEGKKHEI 188 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R G L L R +G L L G++RE+TD Sbjct: 189 RLFAEAAGLQLLELKRIRIGSLVLGGLPYGKYRELTD 225 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 29/225 (12%) Query: 1 MRQFIISENTMQK---TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDE 57 +R+ ++S + QV FS + + ++ +KP V+ D Sbjct: 44 VRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLDEHILQANAPVYVMLHKPIGVVSATKDI 103 Query: 58 AGRKTLKEFIPVQ---GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVE 114 KT+ + + + ++ AGRLD +S GLL+LTN+ L P + K+Y V + Sbjct: 104 Q-HKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSDALMSPTHKVDKVYRVTLA 162 Query: 115 GIPTQDALEALRNGVT--LNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITL 172 T++ + A G+ D T PA ++ + ++TL Sbjct: 163 NPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVA-------------------EVTL 203 Query: 173 YEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREVT 216 +EG+ Q++RM P + L R ++GD LD LA GE R +T Sbjct: 204 HEGKYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALT 248 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 41/238 (17%) Query: 1 MRQFIISENTMQK---TSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDE 57 +++ I ++ T+ + V ++ R E I+ NKP + D Sbjct: 18 VKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGEIIEAIKPLYIMLNKPTGYVCANKDN 77 Query: 58 AGRKTLKEFIPVQG---------------VYAAGRLDRDSEGLLVLTNNGALQARLTQPG 102 + + I Q + AGRLD D+ GL++LT+NG R+T P Sbjct: 78 IHSP-VVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTTGLVLLTDNGEWNHRVTSPN 136 Query: 103 KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGP--TLPAGAELVDEPAWLWPRNPPIRER 160 K K Y V++E A++ L GV L+ TLPA EL+ Sbjct: 137 KACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATVELIS--------------- 181 Query: 161 KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVTD 217 + + +++ EGR QV+RM VG ++L R A+G LD NL G+WR +T+ Sbjct: 182 ----NTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTN 235 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 194 bits (494), Expect = 2e-48, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 32/219 (14%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 ++ + + + + ++ R + +++ NKP + + G + Sbjct: 38 KRVTVKGEFAKSPALKVDP----ATVRVDGEALDAPDGILVMLNKPLGYVCSHDNNEGMR 93 Query: 62 TLKEFIP------VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 + + +P + + GRLD+D+ GL+++T++ L +LT P K+Y V V+ Sbjct: 94 -IYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTKLVHQLTSPKHHVDKVYQVSVDC 152 Query: 116 IPTQDALEALRNGVTLNDG--PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLY 173 D +++ GV L +G LPA E+V E +TL Sbjct: 153 PLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVAN-------------------VTLN 193 Query: 174 EGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEW 212 EG+ QVRRM A G+ L R G Y L +LA GEW Sbjct: 194 EGKYHQVRRMFAACGYHVEALHRSQFGQYRLQDLAQGEW 232 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 25/217 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE-NQPTRVILFNKPYDVLPQFTDEAGRK 61 + ++ + + VK R + + N + NKP VL D+ GR+ Sbjct: 26 RVTVN----KHEAIIGMDVKPEDVVRIDGERVKLNTRYEYYILNKPKRVLCSNEDKFGRR 81 Query: 62 TLKEFIPVQ-GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 +FI + ++ GRLD +EGL++++N+G + + P K+ K Y +V Sbjct: 82 LAVDFIKSRARLFTYGRLDFMTEGLIIISNDGEVYNHVMHPRKKLYKSYIAKVSREIEDK 141 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 +EAL++GV ++ T PA + +D+ L+I ++EGRNRQ+ Sbjct: 142 DIEALQHGVVIDGKRTAPAKVKKIDKKE-------------------LRIAIFEGRNRQI 182 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD 217 R+M +G+ L R +G+ +L NL GE+R + + Sbjct: 183 RKMLETLGYNVNSLKRIKVGELTLGNLQVGEYRALNE 219 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 57/220 (25%), Positives = 91/220 (41%), Gaps = 29/220 (13%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTL 63 +++ QK + E + T + NKP + DE KT+ Sbjct: 34 VKVND-IPQKVGKSTIDL-ANDVVTFDGEVLEYRETIYFMLNKPKGYVCAAKDER-LKTV 90 Query: 64 KEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQ 119 + +P + ++ GRLD D+ GL++LT++G +T P ++ K Y V + Sbjct: 91 LDLLPPALASREPFSCGRLDIDTTGLVILTDDGTWAHGITSPKRKCEKSYLVGSVSELSD 150 Query: 120 DALEALRNGVTL--NDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 + + L GV L +D T PA E +DE ++ + EGR Sbjct: 151 EDMRNLEQGVYLDGDDKITAPAKIEKIDEK-------------------TYRLKITEGRY 191 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSL-DNLANGEWREVT 216 QV+RM V L R +G SL D+L G WR++T Sbjct: 192 HQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLT 231 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 27/220 (12%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKT 62 + ++ +K Q++ S + ++ NKP V+ TD+ T Sbjct: 26 RVTVNGAVCKKGDT---QLREGDSVAVDGAPLAYRQFVYLMLNKPEGVVSASTDKRD-TT 81 Query: 63 LKEFI----PVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPT 118 + + I P + ++ GRLD+ S G ++LT++G + P + K Y V ++ T Sbjct: 82 VVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGFAHEILAPKRHVSKTYTVVIDTPLT 141 Query: 119 QDALEALRNGVTLNDGPTL-PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 ++ GVTL DG L PA E + +K+ L +G Sbjct: 142 EEMRRGFAEGVTLADGTALSPAEVEALTPDGL-----------------TVKVRLRQGVY 184 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 Q++RM G L R A+G +LD LA G+WRE++ Sbjct: 185 HQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELS 224 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 194 bits (493), Expect = 2e-48, Method: Composition-based stats. Identities = 59/220 (26%), Positives = 94/220 (42%), Gaps = 24/220 (10%) Query: 2 RQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRK 61 +Q ++ T+ S + + QP + +KP V+ +D + Sbjct: 25 KQVQVNGQTIMVDSLNV--DPQLQEVTVAGVPIDYQPHVYYMLHKPAGVVSAVSDAVN-Q 81 Query: 62 TLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 T+ + I G++ GRLD+D+EGLL+LTNNG L +L P K K Y V V Sbjct: 82 TVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTNNGQLGYQLLIPKKEVTKCYEVVVNERV 141 Query: 118 TQDALEALRNGVTLNDG-PTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGR 176 T D A G+ + G PA ++ +S S + + + EG+ Sbjct: 142 TDDDQLAFTAGIVFDGGVICKPAQLTILS---------------QSDTESRVLLEISEGK 186 Query: 177 NRQVRRMTAHVGFPTLRLIRYAMGDYSLDN-LANGEWREV 215 QV++M VG + L R +MG LD L+ G +R + Sbjct: 187 FHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPL 226 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 193 bits (491), Expect = 3e-48, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 94/221 (42%), Gaps = 22/221 (9%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR---VILFNKPYDVLPQFTDEAG 59 + ++ + + ++ IL +K + + D G Sbjct: 32 KVKVNGELADSPGIQV--DPDNDRVEVNGKLVQHDEKSKDLYILLHKTIETVTTAKDPQG 89 Query: 60 RKTLKEFIPV----QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEG 115 RKT+ + +P + V+ GRLD SEG+L+LT +G L R+T P KIY+V + G Sbjct: 90 RKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLTTDGELCNRMTHPKWHLPKIYHVTIRG 149 Query: 116 IPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 ++ L ++NG+ L D L A ++ + T+ ++ L +G Sbjct: 150 KLSEKELSVMQNGMYLEDKGELLAPVKI-------------KAISEVGETTKYEMELRQG 196 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 NRQ+RRM LRL R G L L G+WRE++ Sbjct: 197 INRQIRRMFGEFDKTILRLKRVRQGRIELGALKPGKWRELS 237 >UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9J5_THEAQ Length = 245 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 18/199 (9%) Query: 18 NHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGR 77 V ++ R + +L +KP + + L E P + + GR Sbjct: 50 GFHVPEGAALEVEGRPLAVRRHLHLLLHKPAGYVTSRKEGPSVYALLEGFPTRDLSPVGR 109 Query: 78 LDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTL 137 LD+D+EGLL+ T +G L RLT P + K Y V + T + A + G+ L+ TL Sbjct: 110 LDKDTEGLLLFTTDGELLHRLTHPRHKVEKRYLVHLLHPATAADVRAFQEGILLSGEKTL 169 Query: 138 PAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRY 197 PA L ++P +W+++TL EGR QV+RM G L L R Sbjct: 170 PARLHLGEDP------------------TWVELTLLEGRFHQVKRMFQARGNQVLYLKRL 211 Query: 198 AMGDYSLDNLANGEWREVT 216 A+G +L++L G R +T Sbjct: 212 ALGPLTLEDLPLGAARPLT 230 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 193 bits (491), Expect = 4e-48, Method: Composition-based stats. Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 29/222 (13%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPE--NQPTRVILFNKPYDVLPQFTDEAGR 60 + ++ +K QV ++ Q I+ NKP V+ D+ Sbjct: 27 RVAVNGMVCRKADT---QVAEDAAIAVDGTPLAGSYQKYVYIMLNKPEGVVSASRDKRD- 82 Query: 61 KTLKEF----IPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGI 116 T+ + P + ++ AGRLD+ S G ++LT++GAL L P K Y V ++ Sbjct: 83 TTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGALAHDLLSPAHHVDKQYLVTLDTP 142 Query: 117 PTQDALEALRNGVTLNDGPT-LPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEG 175 T GVTL DG T PA AE E +K+TL++G Sbjct: 143 LTDAMRAGFAAGVTLADGETMAPAEAEPAGEDP-----------------CVVKVTLHQG 185 Query: 176 RNRQVRRMTAHVGFPTLRLIRYAMGDYSLD-NLANGEWREVT 216 Q++RM G L RYA+G +LD LA G+WRE+T Sbjct: 186 VYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELT 227 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 61/215 (28%), Positives = 85/215 (39%), Gaps = 24/215 (11%) Query: 3 QFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTR-VILFNKPYDVLPQFTDEAGRK 61 + I+ + V + + R L NKP V+ D GR Sbjct: 31 RVRINGEVATIGARVRPGV---DRVEFDGLEIATEEQREYWLLNKPRGVVSSVVDPEGRP 87 Query: 62 TLKEFIPV-QGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 T++ + VY GRLD DSEGLL+LTN+G L +LT P K Y V V+ + Sbjct: 88 TVRSLVATTSRVYPVGRLDVDSEGLLILTNDGPLTYQLTHPRFHVPKEYLVWVDRPVPRR 147 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 LR GV ++ + V ++I L EGRNRQ+ Sbjct: 148 LGRELREGVEVDGELLRASSVGTVGP-------------------RLVRIVLTEGRNRQI 188 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREV 215 RRM VG RL+R +G +L G R + Sbjct: 189 RRMVGAVGLSVERLVRVRIGPLVDPHLPPGVARRL 223 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 77/216 (35%), Gaps = 25/216 (11%) Query: 4 FIISENTMQKTSFRNHQVKRFSSQRSTRRKP-ENQPTRVILFNKPYDVLPQFTDEAGRKT 62 ++ V + + Q + NKP + K Sbjct: 59 VTVNGEVTLVPQTL---VDENDVITCKGQSVGKKQNKVYYILNKPIGYICSNKRNKDSKI 115 Query: 63 LKEFIP--VQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQD 120 + + + ++ GRLD+D+ GL+++TN+G R+ P K Y V+ + Sbjct: 116 VLDLFDTVEERLFTVGRLDKDTSGLIIVTNDGHFANRVIHPSANIHKEYLVKTNEEVEAE 175 Query: 121 ALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQV 180 L AL +G + P V LKIT+ EG+ R++ Sbjct: 176 HLSALSSGTLVEKTFVRPIRVSKVRRG-------------------TLKITIAEGKKREI 216 Query: 181 RRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 R + P L L R +G L L GEWRE+T Sbjct: 217 RLLMESAKLPVLELTRIRIGGLHLGPLQPGEWREMT 252 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 192 bits (490), Expect = 5e-48, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 89/219 (40%), Gaps = 26/219 (11%) Query: 3 QFIISENTMQKTSFRNH---QVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAG 59 + I + N + QV + + + I NKP + G Sbjct: 20 RLIQNGNVKVNGIINTNPATQVDENDKIECS-IEQYKENKIYIKLNKPRGYVVSSNKNEG 78 Query: 60 RKTLKEFIPVQ--GVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIP 117 + + I +Y GRLD+DS GL++ TN+G ++ K YYV+V+ Sbjct: 79 KP-IYNLIKKDFDNIYPVGRLDKDSSGLILFTNDGVFAKQIIGENTNCEKEYYVRVDDNI 137 Query: 118 TQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRN 177 AL+ L G++L+ PA + V++ + I L EG+N Sbjct: 138 PDGALQKLEYGISLDGQKLKPAKVKRVNKNS-------------------FHIILTEGKN 178 Query: 178 RQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVT 216 RQ+RRM VGF + L R + L++L G ++ +T Sbjct: 179 RQIRRMCQKVGFEVIILKRLRISGILLEDLKEGTFKSLT 217 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.175 0.551 Lambda K H 0.267 0.0534 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,656,956,224 Number of Sequences: 3077464 Number of extensions: 90361148 Number of successful extensions: 185307 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2334 Number of HSP's successfully gapped in prelim test: 1364 Number of HSP's that attempted gapping in prelim test: 175620 Number of HSP's gapped (non-prelim): 4010 length of query: 217 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 93 effective length of database: 658,790,820 effective search space: 61267546260 effective search space used: 61267546260 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 91 (39.3 bits)