Phyre 2 Results for P75966

Email | l.a.kelley@imperial.ac.uk
Description | P75966
Date | Thu Jan 5 12:16:33 GMT 2012
Unique Job ID | 27e34be6dea04f27

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2omlA_ |
|  | 100.0 | 94 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
2 | c2olwB_ |
|  | 100.0 | 95 | PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue
3 | c3dh3C_ |
|  | 100.0 | 31 | PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate
4 | c1vioA_ |
|  | 100.0 | 28 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase
5 | c1kskA_ |
|  | 100.0 | 32 | PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua
6 | c2gmlA_ |
|  | 100.0 | 35 | PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf
7 | d1vioa1 |
|  | 100.0 | 29 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
8 | d1kska4 |
|  | 100.0 | 36 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
9 | d1v9ka_ |
|  | 100.0 | 17 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
10 | c1v9fA_ |
|  | 100.0 | 21 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli
11 | d1v9fa_ |
|  | 100.0 | 21 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
12 | c1qyuA_ |
|  | 100.0 | 20 | PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud
13 | c2i82D_ |
|  | 100.0 | 20 | PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
14 | d2apoa2 |
|  | 98.8 | 13 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
15 | d2ey4a2 |
|  | 98.8 | 17 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
16 | c2ey4A_ |
|  | 98.7 | 15 | PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex
17 | d1r3ea2 |
|  | 98.6 | 18 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
18 | c2apoA_ |
|  | 98.6 | 14 | PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex
19 | c3uaiA_ |
|  | 98.5 | 15 | PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae
20 | d1sgva2 |
|  | 98.5 | 18 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
21 | d1k8wa5 |
| not modelled | 98.5 | 20 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
22 | c1sgvA_ |
| not modelled | 98.4 | 20 | PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub)
23 | c1k8wA_ |
| not modelled | 98.0 | 21 | PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
24 | c1ze2B_ |
| not modelled | 95.4 | 18 | PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate
25 | c2k6pA_ |
| not modelled | 32.2 | 11 | PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423
26 | c2fo1A_ |
| not modelled | 19.2 | 16 | PDB header:gene regulation/signalling protein/dna Chain: A: PDB Molecule:lin-12 and glp-1 phenotype protein 1, isoform b; PDBTitle: crystal structure of the csl-notch-mastermind ternary2 complex bound to dna
27 | d2ysca1 |
| not modelled | 13.8 | 45 | Fold:WW domain-like Superfamily:WW domain Family:WW domain
28 | d1nkga1 |
| not modelled | 12.4 | 14 | Fold:Prealbumin-like Superfamily:Starch-binding domain-like Family:Rhamnogalacturonase B, RhgB, middle domain
29 | c3cjsA_ |
| not modelled | 12.0 | 50 | PDB header:transferase/ribosomal protein Chain: A: PDB Molecule:ribosomal protein l11 methyltransferase; PDBTitle: minimal recognition complex between prma and ribosomal protein l11
30 | d2ho2a1 |
| not modelled | 11.7 | 42 | Fold:WW domain-like Superfamily:WW domain Family:WW domain
31 | c2jmzA_ |
| not modelled | 11.6 | 14 | PDB header:unknown function Chain: A: PDB Molecule:hypothetical protein mj0781; PDBTitle: solution structure of a klba intein precursor from2 methanococcus jannaschii
32 | c1f5nA_ |
| not modelled | 11.4 | 13 | PDB header:signaling protein Chain: A: PDB Molecule:interferon-induced guanylate-binding protein 1; PDBTitle: human guanylate binding protein-1 in complex with the gtp2 analogue, gmppnp.
33 | c3h7hA_ |
| not modelled | 11.2 | 16 | PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273)
34 | d1zhva1 |
| not modelled | 9.4 | 31 | Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like
35 | c1mzwB_ |
| not modelled | 8.3 | 23 | PDB header:isomerase Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein; PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide
36 | d2hq4a1 |
| not modelled | 7.9 | 33 | Fold:PH1570-like Superfamily:PH1570-like Family:PH1570-like
37 | c2voiB_ |
| not modelled | 7.8 | 27 | PDB header:apoptosis Chain: B: PDB Molecule:bh3-interacting domain death agonist p13; PDBTitle: structure of mouse a1 bound to the bid bh3-domain
38 | c2imzA_ |
| not modelled | 6.6 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:endonuclease pi-mtui; PDBTitle: crystal structure of mtu reca intein splicing domain
39 | d1t6la1 |
| not modelled | 6.4 | 19 | Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor
40 | c2exuA_ |
| not modelled | 6.2 | 16 | PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain
41 | c1tlqA_ |
| not modelled | 6.1 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ypjq; PDBTitle: crystal structure of protein ypjq from bacillus subtilis, pfam duf64
42 | d1tlqa_ |
| not modelled | 6.1 | 13 | Fold:YutG-like Superfamily:YutG-like Family:YutG-like
43 | d1k4ta3 |
| not modelled | 5.4 | 13 | Fold:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Superfamily:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment Family:Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
44 | d1y9ia_ |
| not modelled | 5.3 | 13 | Fold:YutG-like Superfamily:YutG-like Family:YutG-like
45 | c3bbnD_ |
| not modelled | 5.3 | 13 | PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
46 | c1vs3B_ |
| not modelled | 5.2 | 40 | PDB header:isomerase Chain: B: PDB Molecule:trna pseudouridine synthase a; PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8
47 | c2x5pA_ |
| not modelled | 5.2 | 18 | PDB header:protein binding Chain: A: PDB Molecule:fibronectin binding protein; PDBTitle: crystal structure of the streptococcus pyogenes fibronectin binding2 protein fbab-b