BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (78 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobact... 151 6e-36 UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Kl... 100 1e-20 UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobact... 62 6e-09 UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacte... 59 5e-08 UniRef50_UPI000190C002 hypothetical protein Salmonelentericaente... 58 9e-08 UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID... 52 8e-06 UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae Rep... 49 5e-05 >UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobacteriaceae RepID=YJJZ_ECOLI Length = 78 Score = 151 bits (381), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS Sbjct: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 Query: 61 CLALIAGIMLMIMNLNQG 78 CLALIAGIMLMIMNLNQG Sbjct: 61 CLALIAGIMLMIMNLNQG 78 >UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Klebsiella pneumoniae RepID=C4X2X9_KLEPN Length = 117 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 44/76 (57%), Positives = 64/76 (84%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 MLQR LGSGWGV++PG LI L YA +S+D WR+++ +G++++ M++H+QLRH+ILLPS Sbjct: 39 MLQRALGSGWGVMIPGALIVALGYAGVSADVWRVLVAVGMLMSAAMIWHRQLRHFILLPS 98 Query: 61 CLALIAGIMLMIMNLN 76 C+ALI GIMLMI+++ Sbjct: 99 CVALIGGIMLMIVDIK 114 >UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobacteriaceae RepID=D2T447_ERWPY Length = 77 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 49/74 (66%) Query: 4 RTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLA 63 + + SGWGVL+P ++ L LS +WR++++ + T +ML+H++LRH++LLPSC+A Sbjct: 3 KRMDSGWGVLVPCAMMPLLALMKLSFGEWRVLMVAAFLATVLMLFHQRLRHFLLLPSCIA 62 Query: 64 LIAGIMLMIMNLNQ 77 + G+ + N + Sbjct: 63 VGGGLAAVSANFSS 76 >UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacteriaceae RepID=C9XUY4_CROTZ Length = 60 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 42/55 (76%) Query: 22 LMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLN 76 L + +LS + WR +I++ L+ T MLYH +LRHY+LLPSC+A +G+ML++ +L+ Sbjct: 2 LAWKELSWEAWRGIIILALLATVGMLYHPRLRHYVLLPSCIAFASGLMLIVSHLH 56 >UniRef50_UPI000190C002 hypothetical protein Salmonelentericaenterica_02876 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190C002 Length = 89 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 5/65 (7%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 MLQRTLGSGWGVLLPG++I GL + LS+ +++I+ GL+L+ +MLY + + + Sbjct: 1 MLQRTLGSGWGVLLPGVIIVGLAFIGLSAYALKLLIVSGLLLSALMLYQQTITAF----- 55 Query: 61 CLALI 65 C A I Sbjct: 56 CTAAI 60 >UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID=A1JJ86_YERE8 Length = 74 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/73 (46%), Positives = 56/73 (76%) Query: 2 LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61 + R + SGWG+LLP L+ L +AD++ Q R++I++ ++ T MLYH +LRH++LLPSC Sbjct: 1 MSRGMSSGWGMLLPFTLLPVLGWADITVGQLRVLIVVAMLATVSMLYHARLRHFLLLPSC 60 Query: 62 LALIAGIMLMIMN 74 LAL+AG++ ++M+ Sbjct: 61 LALLAGMVAVLMH 73 >UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae RepID=A4TQK2_YERPP Length = 95 Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 40/57 (70%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYIL 57 +L R + SGWG+LLP L+ L + D+S Q RI+I++ ++ T MLYH +LRH++L Sbjct: 17 LLSRGMSSGWGILLPFTLLPVLGWVDISIGQLRILIVVAMLATVSMLYHVRLRHFLL 73 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Kl... 87 2e-16 UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobact... 78 1e-13 UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobact... 74 1e-12 UniRef50_UPI000190C002 hypothetical protein Salmonelentericaente... 62 4e-09 UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID... 60 2e-08 UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacte... 57 1e-07 UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae Rep... 57 2e-07 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Klebsiella pneumoniae RepID=C4X2X9_KLEPN Length = 117 Score = 86.5 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 44/76 (57%), Positives = 64/76 (84%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 MLQR LGSGWGV++PG LI L YA +S+D WR+++ +G++++ M++H+QLRH+ILLPS Sbjct: 39 MLQRALGSGWGVMIPGALIVALGYAGVSADVWRVLVAVGMLMSAAMIWHRQLRHFILLPS 98 Query: 61 CLALIAGIMLMIMNLN 76 C+ALI GIMLMI+++ Sbjct: 99 CVALIGGIMLMIVDIK 114 >UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobacteriaceae RepID=YJJZ_ECOLI Length = 78 Score = 77.7 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 78/78 (100%), Positives = 78/78 (100%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS Sbjct: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60 Query: 61 CLALIAGIMLMIMNLNQG 78 CLALIAGIMLMIMNLNQG Sbjct: 61 CLALIAGIMLMIMNLNQG 78 >UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobacteriaceae RepID=D2T447_ERWPY Length = 77 Score = 73.8 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 50/76 (65%) Query: 2 LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61 + + + SGWGVL+P ++ L LS +WR++++ + T +ML+H++LRH++LLPSC Sbjct: 1 MFKRMDSGWGVLVPCAMMPLLALMKLSFGEWRVLMVAAFLATVLMLFHQRLRHFLLLPSC 60 Query: 62 LALIAGIMLMIMNLNQ 77 +A+ G+ + N + Sbjct: 61 IAVGGGLAAVSANFSS 76 >UniRef50_UPI000190C002 hypothetical protein Salmonelentericaenterica_02876 n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. 404ty RepID=UPI000190C002 Length = 89 Score = 62.3 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 28/55 (50%), Positives = 42/55 (76%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHY 55 MLQRTLGSGWGVLLPG++I GL + LS+ +++I+ GL+L+ +MLY + + + Sbjct: 1 MLQRTLGSGWGVLLPGVIIVGLAFIGLSAYALKLLIVSGLLLSALMLYQQTITAF 55 >UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID=A1JJ86_YERE8 Length = 74 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 34/74 (45%), Positives = 56/74 (75%) Query: 2 LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61 + R + SGWG+LLP L+ L +AD++ Q R++I++ ++ T MLYH +LRH++LLPSC Sbjct: 1 MSRGMSSGWGMLLPFTLLPVLGWADITVGQLRVLIVVAMLATVSMLYHARLRHFLLLPSC 60 Query: 62 LALIAGIMLMIMNL 75 LAL+AG++ ++M+ Sbjct: 61 LALLAGMVAVLMHY 74 >UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacteriaceae RepID=C9XUY4_CROTZ Length = 60 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 42/55 (76%) Query: 22 LMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLN 76 L + +LS + WR +I++ L+ T MLYH +LRHY+LLPSC+A +G+ML++ +L+ Sbjct: 2 LAWKELSWEAWRGIIILALLATVGMLYHPRLRHYVLLPSCIAFASGLMLIVSHLH 56 >UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae RepID=A4TQK2_YERPP Length = 95 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 39/56 (69%) Query: 1 MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYI 56 +L R + SGWG+LLP L+ L + D+S Q RI+I++ ++ T MLYH +LRH++ Sbjct: 17 LLSRGMSSGWGILLPFTLLPVLGWVDISIGQLRILIVVAMLATVSMLYHVRLRHFL 72 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.324 0.144 0.426 Lambda K H 0.267 0.0445 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 306,302,275 Number of Sequences: 3077464 Number of extensions: 10048224 Number of successful extensions: 53725 Number of sequences better than 1.0e-01: 13 Number of HSP's better than 0.1 without gapping: 21 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 53703 Number of HSP's gapped (non-prelim): 22 length of query: 78 length of database: 1,040,396,356 effective HSP length: 49 effective length of query: 29 effective length of database: 889,600,620 effective search space: 25798417980 effective search space used: 25798417980 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 87 (38.0 bits)