BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (78 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Kl...    87   2e-16
UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobact...    78   1e-13
UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobact...    74   1e-12
UniRef50_UPI000190C002 hypothetical protein Salmonelentericaente...    62   4e-09
UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID...    60   2e-08
UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacte...    57   1e-07
UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae Rep...    57   2e-07

>UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Klebsiella pneumoniae
           RepID=C4X2X9_KLEPN
          Length = 117

 Score = 86.5 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 64/76 (84%)

Query: 1   MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60
           MLQR LGSGWGV++PG LI  L YA +S+D WR+++ +G++++  M++H+QLRH+ILLPS
Sbjct: 39  MLQRALGSGWGVMIPGALIVALGYAGVSADVWRVLVAVGMLMSAAMIWHRQLRHFILLPS 98

Query: 61  CLALIAGIMLMIMNLN 76
           C+ALI GIMLMI+++ 
Sbjct: 99  CVALIGGIMLMIVDIK 114


>UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobacteriaceae
          RepID=YJJZ_ECOLI
          Length = 78

 Score = 77.7 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60
          MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS
Sbjct: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60

Query: 61 CLALIAGIMLMIMNLNQG 78
          CLALIAGIMLMIMNLNQG
Sbjct: 61 CLALIAGIMLMIMNLNQG 78


>UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobacteriaceae
          RepID=D2T447_ERWPY
          Length = 77

 Score = 73.8 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 50/76 (65%)

Query: 2  LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61
          + + + SGWGVL+P  ++  L    LS  +WR++++   + T +ML+H++LRH++LLPSC
Sbjct: 1  MFKRMDSGWGVLVPCAMMPLLALMKLSFGEWRVLMVAAFLATVLMLFHQRLRHFLLLPSC 60

Query: 62 LALIAGIMLMIMNLNQ 77
          +A+  G+  +  N + 
Sbjct: 61 IAVGGGLAAVSANFSS 76


>UniRef50_UPI000190C002 hypothetical protein Salmonelentericaenterica_02876 n=1
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          str. 404ty RepID=UPI000190C002
          Length = 89

 Score = 62.3 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHY 55
          MLQRTLGSGWGVLLPG++I GL +  LS+   +++I+ GL+L+ +MLY + +  +
Sbjct: 1  MLQRTLGSGWGVLLPGVIIVGLAFIGLSAYALKLLIVSGLLLSALMLYQQTITAF 55


>UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID=A1JJ86_YERE8
          Length = 74

 Score = 60.0 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 56/74 (75%)

Query: 2  LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61
          + R + SGWG+LLP  L+  L +AD++  Q R++I++ ++ T  MLYH +LRH++LLPSC
Sbjct: 1  MSRGMSSGWGMLLPFTLLPVLGWADITVGQLRVLIVVAMLATVSMLYHARLRHFLLLPSC 60

Query: 62 LALIAGIMLMIMNL 75
          LAL+AG++ ++M+ 
Sbjct: 61 LALLAGMVAVLMHY 74


>UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacteriaceae
          RepID=C9XUY4_CROTZ
          Length = 60

 Score = 57.3 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 22 LMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLN 76
          L + +LS + WR +I++ L+ T  MLYH +LRHY+LLPSC+A  +G+ML++ +L+
Sbjct: 2  LAWKELSWEAWRGIIILALLATVGMLYHPRLRHYVLLPSCIAFASGLMLIVSHLH 56


>UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae RepID=A4TQK2_YERPP
          Length = 95

 Score = 56.9 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYI 56
          +L R + SGWG+LLP  L+  L + D+S  Q RI+I++ ++ T  MLYH +LRH++
Sbjct: 17 LLSRGMSSGWGILLPFTLLPVLGWVDISIGQLRILIVVAMLATVSMLYHVRLRHFL 72


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Kl...    87   2e-16
UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobact...    78   1e-13
UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobact...    76   3e-13
UniRef50_UPI000190C002 hypothetical protein Salmonelentericaente...    61   9e-09
UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID...    60   2e-08
UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacte...    58   9e-08
UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae Rep...    57   2e-07

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_C4X2X9 Tryptophan-specific transport protein n=4 Tax=Klebsiella pneumoniae
           RepID=C4X2X9_KLEPN
          Length = 117

 Score = 86.9 bits (214), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 44/76 (57%), Positives = 64/76 (84%)

Query: 1   MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60
           MLQR LGSGWGV++PG LI  L YA +S+D WR+++ +G++++  M++H+QLRH+ILLPS
Sbjct: 39  MLQRALGSGWGVMIPGALIVALGYAGVSADVWRVLVAVGMLMSAAMIWHRQLRHFILLPS 98

Query: 61  CLALIAGIMLMIMNLN 76
           C+ALI GIMLMI+++ 
Sbjct: 99  CVALIGGIMLMIVDIK 114


>UniRef50_P55914 Uncharacterized protein yjjZ n=87 Tax=Enterobacteriaceae
          RepID=YJJZ_ECOLI
          Length = 78

 Score = 77.6 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60
          MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS
Sbjct: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPS 60

Query: 61 CLALIAGIMLMIMNLNQG 78
          CLALIAGIMLMIMNLNQG
Sbjct: 61 CLALIAGIMLMIMNLNQG 78


>UniRef50_D2T447 Uncharacterized protein yjjZ n=12 Tax=Enterobacteriaceae
          RepID=D2T447_ERWPY
          Length = 77

 Score = 76.1 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 50/76 (65%)

Query: 2  LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61
          + + + SGWGVL+P  ++  L    LS  +WR++++   + T +ML+H++LRH++LLPSC
Sbjct: 1  MFKRMDSGWGVLVPCAMMPLLALMKLSFGEWRVLMVAAFLATVLMLFHQRLRHFLLLPSC 60

Query: 62 LALIAGIMLMIMNLNQ 77
          +A+  G+  +  N + 
Sbjct: 61 IAVGGGLAAVSANFSS 76


>UniRef50_UPI000190C002 hypothetical protein Salmonelentericaenterica_02876 n=1
          Tax=Salmonella enterica subsp. enterica serovar Typhi
          str. 404ty RepID=UPI000190C002
          Length = 89

 Score = 61.5 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 42/55 (76%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHY 55
          MLQRTLGSGWGVLLPG++I GL +  LS+   +++I+ GL+L+ +MLY + +  +
Sbjct: 1  MLQRTLGSGWGVLLPGVIIVGLAFIGLSAYALKLLIVSGLLLSALMLYQQTITAF 55


>UniRef50_A1JJ86 Putative membrane protein n=4 Tax=Yersinia RepID=A1JJ86_YERE8
          Length = 74

 Score = 59.9 bits (144), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/74 (45%), Positives = 56/74 (75%)

Query: 2  LQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSC 61
          + R + SGWG+LLP  L+  L +AD++  Q R++I++ ++ T  MLYH +LRH++LLPSC
Sbjct: 1  MSRGMSSGWGMLLPFTLLPVLGWADITVGQLRVLIVVAMLATVSMLYHARLRHFLLLPSC 60

Query: 62 LALIAGIMLMIMNL 75
          LAL+AG++ ++M+ 
Sbjct: 61 LALLAGMVAVLMHY 74


>UniRef50_C9XUY4 Uncharacterized protein yjjZ n=7 Tax=Enterobacteriaceae
          RepID=C9XUY4_CROTZ
          Length = 60

 Score = 58.0 bits (139), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 42/55 (76%)

Query: 22 LMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYILLPSCLALIAGIMLMIMNLN 76
          L + +LS + WR +I++ L+ T  MLYH +LRHY+LLPSC+A  +G+ML++ +L+
Sbjct: 2  LAWKELSWEAWRGIIILALLATVGMLYHPRLRHYVLLPSCIAFASGLMLIVSHLH 56


>UniRef50_A4TQK2 Membrane protein n=30 Tax=Enterobacteriaceae RepID=A4TQK2_YERPP
          Length = 95

 Score = 56.8 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/56 (44%), Positives = 39/56 (69%)

Query: 1  MLQRTLGSGWGVLLPGLLIAGLMYADLSSDQWRIVILMGLVLTPMMLYHKQLRHYI 56
          +L R + SGWG+LLP  L+  L + D+S  Q RI+I++ ++ T  MLYH +LRH++
Sbjct: 17 LLSRGMSSGWGILLPFTLLPVLGWVDISIGQLRILIVVAMLATVSMLYHVRLRHFL 72


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.326    0.148    0.446 

Lambda     K      H
   0.267   0.0459    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 331,405,611
Number of Sequences: 3077464
Number of extensions: 11413100
Number of successful extensions: 74045
Number of sequences better than 1.0e-01: 14
Number of HSP's better than  0.1 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74017
Number of HSP's gapped (non-prelim): 27
length of query: 78
length of database: 1,040,396,356
effective HSP length: 49
effective length of query: 29
effective length of database: 889,600,620
effective search space: 25798417980
effective search space used: 25798417980
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 87 (38.0 bits)
