Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	D	K	E	L	K	F	L	V	V	D	D	F	S	T	M	R	R	I	V	R	N	L	L	K	E	L	G	F	N	N	V	E	E	A	E	D	G	V	D	A	L	N	K	L	Q	A	G	G	Y	G	F	V	I	S	D	W	N	M
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		P	N	M	D	G	L	E	L	L	K	T	I	R	A	D	G	A	M	S	A	L	P	V	L	M	V	T	A	E	A	K	K	E	N	I	I	A	A	A	Q	A	G	A	S	G	Y	V	V	K	P	F	T	A	A	T	L	E	E	K	L
Secondary structure
SS confidence
Disorder																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		N	K	I	F	E	K	L	G	M
Secondary structure
SS confidence
Disorder								?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1hey chain A Region: 3 - 129 Aligned: 127 Modelled: 127 Confidence: 100.0% Identity: 93% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1jbe chain A Region: 2 - 129 Aligned: 126 Modelled: 128 Confidence: 100.0% Identity: 100% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 2ayx chain A Region: 2 - 128 Aligned: 124 Modelled: 127 Confidence: 100.0% Identity: 37% PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain Phyre2 PDB 1p6q chain A Region: 1 - 128 Aligned: 128 Modelled: 128 Confidence: 100.0% Identity: 34% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3t6k chain B Region: 4 - 126 Aligned: 122 Modelled: 123 Confidence: 99.9% Identity: 30% PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution Phyre2 PDB 3bre chain A Region: 5 - 127 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 24% PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 Phyre2 PDB 1k66 chain A Region: 1 - 126 Aligned: 126 Modelled: 126 Confidence: 99.9% Identity: 26% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1zes chain A domain 1 Region: 7 - 127 Aligned: 120 Modelled: 121 Confidence: 99.9% Identity: 28% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1w25 chain B Region: 5 - 126 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 26% PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp Phyre2 PDB 3h1g chain A Region: 6 - 126 Aligned: 121 Modelled: 121 Confidence: 99.9% Identity: 48% PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori Phyre2 PDB 1w25 chain A domain 1 Region: 5 - 126 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 26% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3gt7 chain A Region: 7 - 128 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus Phyre2 PDB 2zay chain A Region: 6 - 127 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 17% PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans Phyre2 PDB 2ayx chain A domain 1 Region: 1 - 128 Aligned: 125 Modelled: 128 Confidence: 99.9% Identity: 38% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3cnb chain C Region: 5 - 126 Aligned: 121 Modelled: 122 Confidence: 99.9% Identity: 21% PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h Phyre2 PDB 2a9p chain A domain 1 Region: 7 - 126 Aligned: 116 Modelled: 120 Confidence: 99.9% Identity: 32% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 1dbw chain A Region: 4 - 127 Aligned: 121 Modelled: 124 Confidence: 99.9% Identity: 26% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 3i5a chain A Region: 5 - 127 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 22% PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae Phyre2 PDB 1ys7 chain A domain 2 Region: 7 - 128 Aligned: 119 Modelled: 122 Confidence: 99.9% Identity: 32% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 PDB 2pl1 chain A domain 1 Region: 7 - 126 Aligned: 117 Modelled: 119 Confidence: 99.9% Identity: 28% Fold: Flavodoxin-like Superfamily: CheY-like Family: CheY-related Phyre2 1 d1heya_ 2 d1jbea_ 3 c2ayxA_ 4 d1p6qa_ 5 c3t6kB_ 6 c3breA_ 7 d1k66a_ 8 d1zesa1 9 c1w25B_ 10 c3h1gA_ 11 d1w25a1 12 c3gt7A_ 13 c2zayA_ 14 d2ayxa1 15 c3cnbC_ 16 d2a9pa1 17 d1dbwa_ 18 c3i5aA_ 19 d1ys7a2 20 d2pl1a1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1heya_ 100.0 93 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 2 d1jbea_ 100.0 100 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 3 c2ayxA_ 100.0 37 PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain 4 d1p6qa_ 100.0 34 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 5 c3t6kB_ 99.9 30 PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution 6 c3breA_ 99.9 24 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702 7 d1k66a_ 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 8 d1zesa1 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 9 c1w25B_ 99.9 26 PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp 10 c3h1gA_ 99.9 48 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis protein chey homolog; PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori 11 d1w25a1 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 12 c3gt7A_ 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus 13 c2zayA_ 99.9 17 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans 14 d2ayxa1 99.9 38 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 15 c3cnbC_ 99.9 21 PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h 16 d2a9pa1 99.9 32 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 d1dbwa_ 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 18 c3i5aA_ 99.9 22 PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae 19 d1ys7a2 99.9 32 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 20 d2pl1a1 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 21 d1mvoa_ not modelled 99.9 30 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 22 d1zh2a1 not modelled 99.9 32 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 23 d1ny5a1 not modelled 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 24 c2qzjC_ not modelled 99.9 23 PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile 25 d1kgsa2 not modelled 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 26 c3cfyA_ not modelled 99.9 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus 27 c3khtA_ not modelled 99.9 25 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis 28 c2zwmA_ not modelled 99.9 28 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis 29 d1zgza1 not modelled 99.9 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 30 d1dz3a_ not modelled 99.9 25 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 31 c1ny5A_ not modelled 99.9 27 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state 32 d1krwa_ not modelled 99.9 31 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 33 c2rjnA_ not modelled 99.9 25 PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis 34 d1s8na_ not modelled 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 35 d1qkka_ not modelled 99.9 34 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 36 c2jrlA_ not modelled 99.9 23 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer 37 d1peya_ not modelled 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 38 d1i3ca_ not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 39 c3eq2A_ not modelled 99.9 27 PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb 40 c3c3mA_ not modelled 99.9 26 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1 41 c3hebB_ not modelled 99.9 23 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum 42 d1xhfa1 not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 43 c3r0jA_ not modelled 99.9 32 PDB header:dna binding protein Chain: A: PDB Molecule:possible two component system response transcriptional PDBTitle: structure of phop from mycobacterium tuberculosis 44 c3hv2B_ not modelled 99.9 26 PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5 45 d1u0sy_ not modelled 99.9 30 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 46 c3eulB_ not modelled 99.9 27 PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis 47 c3gl9B_ not modelled 99.9 33 PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism 48 d2r25b1 not modelled 99.9 31 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 49 c2qvgA_ not modelled 99.9 21 PDB header:transferase Chain: A: PDB Molecule:two component response regulator; PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila 50 c3lteH_ not modelled 99.9 28 PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri 51 c3grcD_ not modelled 99.9 21 PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666 52 c3dzdA_ not modelled 99.9 22 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state 53 c3nhzA_ not modelled 99.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra 54 c3b2nA_ not modelled 99.9 27 PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus 55 c3cg4A_ not modelled 99.9 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 56 c3cu5B_ not modelled 99.9 25 PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg 57 c3hdvB_ not modelled 99.9 27 PDB header:transcription regulator Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida 58 d1yioa2 not modelled 99.9 29 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 59 c3jteA_ not modelled 99.9 30 PDB header:protein binding Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum 60 c3hdgE_ not modelled 99.9 25 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 61 c2qr3A_ not modelled 99.9 28 PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis 62 d1a04a2 not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 63 c3luaA_ not modelled 99.9 22 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum 64 d1mb3a_ not modelled 99.9 24 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 65 c2qv0A_ not modelled 99.9 24 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 66 c3hzhA_ not modelled 99.9 25 PDB header:signaling protein Chain: A: PDB Molecule:chemotaxis response regulator (chey-3); PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi 67 c3crnA_ not modelled 99.9 26 PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1 68 c3cz5B_ not modelled 99.9 28 PDB header:transcription regulator Chain: B: PDB Molecule:two-component response regulator, luxr family; PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1 69 d1dcfa_ not modelled 99.9 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:Receiver domain of the ethylene receptor 70 c3cg0A_ not modelled 99.9 23 PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding 71 c3mmnA_ not modelled 99.9 29 PDB header:transferase Chain: A: PDB Molecule:histidine kinase homolog; PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+ 72 c3rqiA_ not modelled 99.9 23 PDB header:transcription Chain: A: PDB Molecule:response regulator protein; PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate 73 d1k68a_ not modelled 99.9 25 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 74 c1a2oB_ not modelled 99.9 28 PDB header:bacterial chemotaxis Chain: B: PDB Molecule:cheb methylesterase; PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain 75 d1w25a2 not modelled 99.9 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 76 c3m6mF_ not modelled 99.9 35 PDB header:lyase/transferase Chain: F: PDB Molecule:sensory/regulatory protein rpfc; PDBTitle: crystal structure of rpff complexed with rec domain of rpfc 77 c3nhmA_ not modelled 99.9 29 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from myxococcus xanthus 78 c3i42A_ not modelled 99.9 31 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus 79 c2gwrA_ not modelled 99.9 25 PDB header:signaling protein Chain: A: PDB Molecule:dna-binding response regulator mtra; PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis 80 d1p2fa2 not modelled 99.9 28 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 81 c3c97A_ not modelled 99.9 24 PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae 82 c3ilhA_ not modelled 99.9 24 PDB header:transcription regulator Chain: A: PDB Molecule:two component response regulator; PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii 83 c3snkA_ not modelled 99.9 21 PDB header:signaling protein Chain: A: PDB Molecule:response regulator chey-like protein; PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution 84 c3kcnA_ not modelled 99.9 20 PDB header:lyase Chain: A: PDB Molecule:adenylate cyclase homolog; PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica 85 c1ys7B_ not modelled 99.9 32 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulatory protein prra; PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+ 86 c2qxyB_ not modelled 99.9 31 PDB header:transcription Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from thermotoga2 maritima 87 c3f6cB_ not modelled 99.9 21 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 88 c1kgsA_ not modelled 99.9 28 PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima 89 c2jk1A_ not modelled 99.9 22 PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain 90 c2j48A_ not modelled 99.9 24 PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein. 91 c1p2fA_ not modelled 99.9 28 PDB header:transcription Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog 92 c3t8yA_ not modelled 99.9 26 PDB header:hydrolase Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb 93 d2b4aa1 not modelled 99.9 17 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 94 c3a0rB_ not modelled 99.9 34 PDB header:transferase Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360) 95 c3q9sA_ not modelled 99.9 25 PDB header:dna binding protein Chain: A: PDB Molecule:dna-binding response regulator; PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans 96 c3lufB_ not modelled 99.9 25 PDB header:signaling protein Chain: B: PDB Molecule:two-component system response regulator/ggdef PDBTitle: structure of probable two-component system response2 regulator/ggdef domain protein 97 c2nt3A_ not modelled 99.9 19 PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant) 98 c3n0rA_ not modelled 99.9 21 PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution 99 c2hqoA_ not modelled 99.9 20 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 100 c2rdmB_ not modelled 99.9 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419 101 c3eqzB_ not modelled 99.9 20 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator; PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea 102 d1a2oa1 not modelled 99.9 26 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 103 c3eodA_ not modelled 99.9 31 PDB header:signaling protein Chain: A: PDB Molecule:protein hnr; PDBTitle: crystal structure of n-terminal domain of e. coli rssb 104 c3h5iA_ not modelled 99.9 28 PDB header:transcription Chain: A: PDB Molecule:response regulator/sensory box protein/ggdef PDBTitle: crystal structure of the n-terminal domain of a response2 regulator/sensory box/ggdef 3-domain protein from3 carboxydothermus hydrogenoformans 105 c1zn2A_ not modelled 99.9 29 PDB header:transcription regulator Chain: A: PDB Molecule:response regulatory protein; PDBTitle: low resolution structure of response regulator styr 106 c2oqrA_ not modelled 99.9 31 PDB header:transcription,signaling protein Chain: A: PDB Molecule:sensory transduction protein regx3; PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis 107 c3ktoA_ not modelled 99.8 14 PDB header:transcription regulator Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein2 from pseudoalteromonas atlantica 108 d1qo0d_ not modelled 99.8 11 Fold:Flavodoxin-like Superfamily:CheY-like Family:Positive regulator of the amidase operon AmiR 109 c2hqrA_ not modelled 99.8 18 PDB header:signaling protein Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism 110 c3kyiB_ not modelled 99.8 29 PDB header:transferase Chain: B: PDB Molecule:chey6 protein; PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides 111 c2yxbA_ not modelled 99.8 12 PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix 112 c3n53B_ not modelled 99.7 24 PDB header:transcription Chain: B: PDB Molecule:response regulator receiver modulated diguanylate cyclase; PDBTitle: crystal structure of a response regulator receiver modulated2 diguanylate cyclase from pelobacter carbinolicus 113 c2qsjB_ not modelled 99.7 32 PDB header:transcription Chain: B: PDB Molecule:dna-binding response regulator, luxr family; PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi 114 c1rnlA_ not modelled 99.7 24 PDB header:signal transduction protein Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl; PDBTitle: the nitrate/nitrite response regulator protein narl from narl 115 c3c3wB_ not modelled 99.7 29 PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr 116 d1fmfa_ not modelled 99.6 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain 117 c3cwoX_ not modelled 99.4 22 PDB header:de novo protein Chain: X: PDB Molecule:beta/alpha-barrel protein based on 1thf and 1tmy; PDBTitle: a beta/alpha-barrel built by the combination of fragments2 from different folds 118 c3klnC_ not modelled 99.1 11 PDB header:transcription Chain: C: PDB Molecule:transcriptional regulator, luxr family; PDBTitle: vibrio cholerae vpst 119 c3fkqA_ not modelled 97.7 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution 120 d1ccwa_ not modelled 97.4 11 Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0