BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (91 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI          185   3e-46
UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TR...    90   2e-17
UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae R...    72   6e-12
UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=...    67   2e-10
UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID...    65   6e-10
UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL...    56   3e-07
UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2...    50   2e-05
UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL...    49   4e-05
UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL...    46   4e-04
UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio ...    41   0.012
UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 Rep...    41   0.013
UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL...    40   0.021
UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvula...    39   0.056

>UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI
          Length = 91

 Score =  185 bits (470), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG
Sbjct: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91
          IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS
Sbjct: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91


>UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TRAL_SALTI
          Length = 101

 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 57/85 (67%)

Query: 6  NKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLK 65
          N L KYRFP+TL+ Q+R  GLPLDE IPAA+ + WG  T KYLF +  A +++  I+  K
Sbjct: 4  NDLDKYRFPKTLSEQNRIIGLPLDEAIPAAVVLLWGFFTKKYLFSLIIAAVIWQLIRAAK 63

Query: 66 KGRGSSWLRDLIYWYMPTALLRGIF 90
           G+ S WL +  YWY+PT L R ++
Sbjct: 64 CGKSSRWLYNWCYWYLPTELFRVVY 88


>UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae RepID=A4WGS1_ENT38
          Length = 101

 Score = 72.0 bits (175), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSG+E+K   Y FPETL  Q R+FGLPLDE+I  A  I  G+  +        A L++  
Sbjct: 2  MSGEEDK---YYFPETLNQQERYFGLPLDEIIIVAPLIILGVLNNMSTELSIIAGLLWAS 58

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIF 90
          ++ LKKG+GS WL +  YW++P+ L +  F
Sbjct: 59 VRYLKKGQGSFWLLNFCYWHLPSLLFKVTF 88


>UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=1
          Tax=Arsenophonus nasoniae RepID=D2U004_9ENTR
          Length = 98

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 56/85 (65%), Gaps = 7/85 (8%)

Query: 6  NKLKKYRFPETLTNQSRWFGLPLDELI---PAAICIGWGITTSKYLFGIGAAVLVYFGIK 62
          +   +Y+FP TLT+Q R+ GLP+DE++   P  IC    I  + ++F    A+  + G++
Sbjct: 2  DAASRYQFPTTLTHQRRFCGLPMDEVVVYLPLIIC---TIFVNMWIFAPALAI-AFVGLR 57

Query: 63 KLKKGRGSSWLRDLIYWYMPTALLR 87
          +LK+G+GSS+L  L YW +PT+++R
Sbjct: 58 RLKQGKGSSYLLGLAYWCLPTSIMR 82


>UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF1_ECOSE
          Length = 99

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 10/86 (11%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDE----LIPAAICIGWGITTSKYLFGIGAAVL 56
          MSG+     +Y FP+TLT Q R  G+PLDE    L PA +    GI  ++ L G+   +L
Sbjct: 1  MSGEVED--RYIFPQTLTEQKRLIGIPLDEASVGLTPACV----GIYFNQSLVGLIVGLL 54

Query: 57 VYFGIKKLKKGRGSSWLRDLIYWYMP 82
           +F +   KKG+G+SWL ++ YW++P
Sbjct: 55 FWFALTHFKKGKGTSWLFNMCYWHLP 80


>UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL n=2 Tax=Pantoea
          sp. At-9b RepID=C8QDT2_9ENTR
          Length = 100

 Score = 56.2 bits (134), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 51/81 (62%)

Query: 10 KYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRG 69
          +Y+FPETL  Q R  GLP +E +    C G G+    ++  +  A  ++  I+ LKKG+G
Sbjct: 7  QYQFPETLNQQKRILGLPTEEAVVIVACAGIGLLCDMFIVMLVVAGALWLLIRHLKKGQG 66

Query: 70 SSWLRDLIYWYMPTALLRGIF 90
          + WL +L+YWY+PTALLR  F
Sbjct: 67 TWWLLNLLYWYLPTALLRLQF 87


>UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2878 n=1
           Tax=Sordaria macrospora RepID=D1ZXH1_SORMA
          Length = 303

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 43/77 (55%)

Query: 8   LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
           + +Y  P  L +        LDE +  AI   WGI +   + G+  ++L ++G +KLK G
Sbjct: 99  MDRYTIPSHLDDPELIGFWTLDEFLAMAIPFIWGILSQHVVIGLMVSLLGWWGFRKLKAG 158

Query: 68  RGSSWLRDLIYWYMPTA 84
           + +SW+  + YW++P++
Sbjct: 159 KATSWILHMAYWHLPSS 175


>UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL n=11
          Tax=Sphingomonadales RepID=A5VGQ7_SPHWW
          Length = 101

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          M G      KY  P  L +        LDE +   I   WGI +   L G   A   ++G
Sbjct: 1  MEGGAMSADKYVIPTHLDDPELIGLWTLDEFLAMVIPFTWGILSQHILIGTLLAGAGWWG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPT 83
          +K+ K GR +SWL  + YW++P 
Sbjct: 61 LKRAKAGRAASWLLHMAYWHLPA 83


>UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL n=6
          Tax=Shewanella baltica RepID=A9L6B5_SHEB9
          Length = 100

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N  + +  P+ L N     G  +DEL+PA +        +  L G+  A   + G++++
Sbjct: 2  DNPTQFFSIPKHLNNTPTLLGFAMDELVPALVFFAVLFMMNHALIGMVLASSWFLGMRRM 61

Query: 65 KKGRGSSWLRDLIYWYMPT 83
          K   G S LR   YWY P 
Sbjct: 62 KSQYGMSVLRLTAYWYAPA 80


>UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D6A4_VIBVU
          Length = 100

 Score = 40.8 bits (94), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 43/86 (50%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N+   +  P+ L+   R  GLP DE++P  +         KYL G+  A + + G++ +
Sbjct: 2  DNQQLFFAIPKHLSKGKRISGLPRDEVLPGFLLFVLFFLAGKYLIGLIFAAIWFIGLRYI 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIF 90
          K   G + +   +YW+  T+L   +F
Sbjct: 62 KVQYGENIIALTLYWWGNTSLNHSVF 87


>UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F357_9PROT
          Length = 101

 Score = 40.8 bits (94), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 35/82 (42%)

Query: 4  DENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKK 63
          D  +    R P  L +  ++     D+ +     IG+ I  +  + G    V+    I +
Sbjct: 5  DSQERLGLRMPRHLDDPEKFLWWDFDQALIVVAIIGFSIVVNMVIAGAILGVIAGMAIGR 64

Query: 64 LKKGRGSSWLRDLIYWYMPTAL 85
          LK GRG  +L    YWY+P  +
Sbjct: 65 LKSGRGRGYLVHTAYWYLPVDM 86


>UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL n=1
          Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK1_9CAUL
          Length = 93

 Score = 40.0 bits (92), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 38/71 (53%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          R P+ L    R+F    DEL+   + +G     + +L G+ A +  ++ +++LKKG   +
Sbjct: 4  RIPQYLDEPERYFIFTPDELVVVVVPLGILTIVANFLIGLVAGLTAFWLLRRLKKGGSLT 63

Query: 72 WLRDLIYWYMP 82
           L  L++W +P
Sbjct: 64 RLLWLMFWILP 74


>UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis
          HTCC2503 RepID=A3VN27_9PROT
          Length = 97

 Score = 38.9 bits (89), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 10 KYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRG 69
          + R P TL    +     +DE I        GI  S+++ GI A  +  + +KK KKG  
Sbjct: 6  RTRIPATLDEPEKLAFWTIDEFIVLIGGFMLGIVLSRFVEGILAGFVGVWALKKFKKGES 65

Query: 70 SSWLRDLIYWYMPTALL 86
           + LR   YW +P++L 
Sbjct: 66 LNLLRYAAYWVLPSSLF 82


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI          122   3e-27
UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TR...   112   4e-24
UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2...   108   6e-23
UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae R...   108   7e-23
UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL...   102   3e-21
UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID...    95   5e-19
UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=...    92   4e-18
UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL...    91   1e-17
UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL...    89   6e-17

Sequences not found previously or not previously below threshold:

UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvula...    65   7e-10
UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 Rep...    62   4e-09
UniRef50_B6ESX4 Conjugative transfer protein TraL n=5 Tax=Vibrio...    61   1e-08
UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio ...    59   5e-08
UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL...    58   8e-08
UniRef50_A8QYP6 TraL protein n=2 Tax=Legionellaceae RepID=A8QYP6...    55   5e-07
UniRef50_B4RLS4 TraL n=8 Tax=Neisseria gonorrhoeae RepID=B4RLS4_...    52   4e-06
UniRef50_Q3IUW9 TraL n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID...    52   8e-06
UniRef50_A5KZF2 Putative conjugative transfer protein TraL n=1 T...    48   6e-05
UniRef50_A4JTP5 Pilus assembly protein n=2 Tax=Burkholderiales R...    46   5e-04
UniRef50_Q5ZTR9 Hypothetical sex pilus assembly protein-like n=1...    45   8e-04
UniRef50_B7XGQ4 Putative pilus assembly protein n=2 Tax=Pseudomo...    44   0.001
UniRef50_Q1MXI3 Putative uncharacterized protein n=1 Tax=Bermane...    44   0.002
UniRef50_C4NVT5 TraL n=27 Tax=Gammaproteobacteria RepID=C4NVT5_E...    43   0.002
UniRef50_C0QUX5 Type IV conjugative transfer system protein TraL...    42   0.004
UniRef50_A1W659 TraL family protein n=3 Tax=Betaproteobacteria R...    42   0.005
UniRef50_Q8L279 Pilus biogenesis protein n=2 Tax=Enterobacteriac...    41   0.014
UniRef50_D2U0R5 Conjugative transfer pilus assembly protein TraL...    39   0.038
UniRef50_B7J826 Type IV conjugative transfer system protein TraL...    39   0.051

>UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI
          Length = 91

 Score =  122 bits (307), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG
Sbjct: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91
          IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS
Sbjct: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91


>UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TRAL_SALTI
          Length = 101

 Score =  112 bits (280), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query: 4  DENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKK 63
          + N L KYRFP+TL+ Q+R  GLPLDE IPAA+ + WG  T KYLF +  A +++  I+ 
Sbjct: 2  EGNDLDKYRFPKTLSEQNRIIGLPLDEAIPAAVVLLWGFFTKKYLFSLIIAAVIWQLIRA 61

Query: 64 LKKGRGSSWLRDLIYWYMPTALLRGIF 90
           K G+ S WL +  YWY+PT L R ++
Sbjct: 62 AKCGKSSRWLYNWCYWYLPTELFRVVY 88


>UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2878 n=1
           Tax=Sordaria macrospora RepID=D1ZXH1_SORMA
          Length = 303

 Score =  108 bits (270), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%)

Query: 8   LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
           + +Y  P  L +        LDE +  AI   WGI +   + G+  ++L ++G +KLK G
Sbjct: 99  MDRYTIPSHLDDPELIGFWTLDEFLAMAIPFIWGILSQHVVIGLMVSLLGWWGFRKLKAG 158

Query: 68  RGSSWLRDLIYWYMPTAL 85
           + +SW+  + YW++P++ 
Sbjct: 159 KATSWILHMAYWHLPSSF 176


>UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae RepID=A4WGS1_ENT38
          Length = 101

 Score =  108 bits (269), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSG+E    KY FPETL  Q R+FGLPLDE+I  A  I  G+  +        A L++  
Sbjct: 2  MSGEE---DKYYFPETLNQQERYFGLPLDEIIIVAPLIILGVLNNMSTELSIIAGLLWAS 58

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIF 90
          ++ LKKG+GS WL +  YW++P+ L +  F
Sbjct: 59 VRYLKKGQGSFWLLNFCYWHLPSLLFKVTF 88


>UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL n=11
          Tax=Sphingomonadales RepID=A5VGQ7_SPHWW
          Length = 101

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 38/83 (45%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          M G      KY  P  L +        LDE +   I   WGI +   L G   A   ++G
Sbjct: 1  MEGGAMSADKYVIPTHLDDPELIGLWTLDEFLAMVIPFTWGILSQHILIGTLLAGAGWWG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPT 83
          +K+ K GR +SWL  + YW++P 
Sbjct: 61 LKRAKAGRAASWLLHMAYWHLPA 83


>UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF1_ECOSE
          Length = 99

 Score = 95.5 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSG+     +Y FP+TLT Q R  G+PLDE          GI  ++ L G+   +L +F 
Sbjct: 1  MSGEVE--DRYIFPQTLTEQKRLIGIPLDEASVGLTPACVGIYFNQSLVGLIVGLLFWFA 58

Query: 61 IKKLKKGRGSSWLRDLIYWYMP 82
          +   KKG+G+SWL ++ YW++P
Sbjct: 59 LTHFKKGKGTSWLFNMCYWHLP 80


>UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=1
          Tax=Arsenophonus nasoniae RepID=D2U004_9ENTR
          Length = 98

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 54/82 (65%), Gaps = 1/82 (1%)

Query: 6  NKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLK 65
          +   +Y+FP TLT+Q R+ GLP+DE++     I   I  + ++F    A+  + G+++LK
Sbjct: 2  DAASRYQFPTTLTHQRRFCGLPMDEVVVYLPLIICTIFVNMWIFAPALAIA-FVGLRRLK 60

Query: 66 KGRGSSWLRDLIYWYMPTALLR 87
          +G+GSS+L  L YW +PT+++R
Sbjct: 61 QGKGSSYLLGLAYWCLPTSIMR 82


>UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL n=6
          Tax=Shewanella baltica RepID=A9L6B5_SHEB9
          Length = 100

 Score = 91.2 bits (225), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 37/81 (45%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N  + +  P+ L N     G  +DEL+PA +        +  L G+  A   + G++++
Sbjct: 2  DNPTQFFSIPKHLNNTPTLLGFAMDELVPALVFFAVLFMMNHALIGMVLASSWFLGMRRM 61

Query: 65 KKGRGSSWLRDLIYWYMPTAL 85
          K   G S LR   YWY P   
Sbjct: 62 KSQYGMSVLRLTAYWYAPAEF 82


>UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL n=2 Tax=Pantoea
          sp. At-9b RepID=C8QDT2_9ENTR
          Length = 100

 Score = 88.5 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/81 (43%), Positives = 51/81 (62%)

Query: 10 KYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRG 69
          +Y+FPETL  Q R  GLP +E +    C G G+    ++  +  A  ++  I+ LKKG+G
Sbjct: 7  QYQFPETLNQQKRILGLPTEEAVVIVACAGIGLLCDMFIVMLVVAGALWLLIRHLKKGQG 66

Query: 70 SSWLRDLIYWYMPTALLRGIF 90
          + WL +L+YWY+PTALLR  F
Sbjct: 67 TWWLLNLLYWYLPTALLRLQF 87


>UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis
          HTCC2503 RepID=A3VN27_9PROT
          Length = 97

 Score = 65.0 bits (157), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 37/79 (46%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
            + R P TL    +     +DE I        GI  S+++ GI A  +  + +KK KKG
Sbjct: 4  TDRTRIPATLDEPEKLAFWTIDEFIVLIGGFMLGIVLSRFVEGILAGFVGVWALKKFKKG 63

Query: 68 RGSSWLRDLIYWYMPTALL 86
             + LR   YW +P++L 
Sbjct: 64 ESLNLLRYAAYWVLPSSLF 82


>UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F357_9PROT
          Length = 101

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 3  GDENKLKKY--RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          G  +  ++   R P  L +  ++     D+ +     IG+ I  +  + G    V+    
Sbjct: 2  GGMDSQERLGLRMPRHLDDPEKFLWWDFDQALIVVAIIGFSIVVNMVIAGAILGVIAGMA 61

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTAL 85
          I +LK GRG  +L    YWY+P  +
Sbjct: 62 IGRLKSGRGRGYLVHTAYWYLPVDM 86


>UniRef50_B6ESX4 Conjugative transfer protein TraL n=5 Tax=Vibrionales
          RepID=B6ESX4_ALISL
          Length = 100

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          E+    Y  P+ L       GLP  E++PA +           L G+   V+ + G++ +
Sbjct: 2  EDPHLFYAIPKHLNKGKTIVGLPQSEVLPALLLFAVFFIAKHQLIGLVIGVVWFAGLRII 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIFS 91
          K   G + +   ++WY  T + + +F+
Sbjct: 62 KTKYGDNIIPLALHWYGSTHVNQHLFT 88


>UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D6A4_VIBVU
          Length = 100

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N+   +  P+ L+   R  GLP DE++P  +         KYL G+  A + + G++ +
Sbjct: 2  DNQQLFFAIPKHLSKGKRISGLPRDEVLPGFLLFVLFFLAGKYLIGLIFAAIWFIGLRYI 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIF 90
          K   G + +   +YW+  T+L   +F
Sbjct: 62 KVQYGENIIALTLYWWGNTSLNHSVF 87


>UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL n=1
          Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK1_9CAUL
          Length = 93

 Score = 58.1 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 40/75 (53%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          R P+ L    R+F    DEL+   + +G     + +L G+ A +  ++ +++LKKG   +
Sbjct: 4  RIPQYLDEPERYFIFTPDELVVVVVPLGILTIVANFLIGLVAGLTAFWLLRRLKKGGSLT 63

Query: 72 WLRDLIYWYMPTALL 86
           L  L++W +P  ++
Sbjct: 64 RLLWLMFWILPYEVM 78


>UniRef50_A8QYP6 TraL protein n=2 Tax=Legionellaceae RepID=A8QYP6_9GAMM
          Length = 98

 Score = 55.4 bits (132), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 36/75 (48%)

Query: 11 YRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGS 70
          Y+F   +    R   L +DEL+ A I     I +++ +      + +  G++ LKKG G 
Sbjct: 6  YQFLNHIDAPKRILTLTMDELVVAGIGFMLLIISNQKILVSLFGLSLLSGLRYLKKGEGP 65

Query: 71 SWLRDLIYWYMPTAL 85
            L  L YW +P+ +
Sbjct: 66 KALLVLAYWSLPSMV 80


>UniRef50_B4RLS4 TraL n=8 Tax=Neisseria gonorrhoeae RepID=B4RLS4_NEIG2
          Length = 93

 Score = 52.3 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
          ++ Y  P ++ +  + F   LD  I      G GI +  +   +  ++ + +   KLK G
Sbjct: 1  MRDYHVPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSISLFIAWRWGKLKSG 60

Query: 68 RGSSWLRDLIYWYMP 82
          +   +   ++YWY+P
Sbjct: 61 KHQWFFLHVLYWYLP 75


>UniRef50_Q3IUW9 TraL n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUW9_RHOS4
          Length = 96

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 32/74 (43%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          +  + L  Q R    P+DE +      G G+     + GI   ++ Y   K++K   G  
Sbjct: 7  KIEQRLQEQGRILLFPIDEGLALLAPAGVGLAMQAAVAGIILGLVSYVLWKRIKGDGGLE 66

Query: 72 WLRDLIYWYMPTAL 85
           +  L YWY+P  L
Sbjct: 67 RILALTYWYLPAEL 80


>UniRef50_A5KZF2 Putative conjugative transfer protein TraL n=1 Tax=Vibrionales
          bacterium SWAT-3 RepID=A5KZF2_9GAMM
          Length = 101

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          ++K   + FP  L    +  G P+DE++P+ +        ++ L  +   +  +  I+ L
Sbjct: 4  QDKQTLFTFPNYLQTDVKIVGFPIDEILPSILLFLMLFNINR-LVAVAVCIGFFLTIRSL 62

Query: 65 KKGRGSSWLRDLIYWY 80
          K   G  ++   ++WY
Sbjct: 63 KVRHGPKFIIHFLHWY 78


>UniRef50_A4JTP5 Pilus assembly protein n=2 Tax=Burkholderiales RepID=A4JTP5_BURVG
          Length = 94

 Score = 45.8 bits (107), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 13 FPETLTNQSRWFGLPLDELIPAAICIGWGITTSKY--LFGIGAAVLVYFGIKKLKKGRGS 70
           P  + NQ + F   LDE I    C+  GI+   Y  L  +   +      K+ K G   
Sbjct: 6  IPRYIDNQPQLFFWELDEAIIFIGCLAGGISLGGYFTLVSMAMGIFAVKAFKRFKNGALE 65

Query: 71 SWLRDLIYW 79
            L  L YW
Sbjct: 66 GILYHLCYW 74


>UniRef50_Q5ZTR9 Hypothetical sex pilus assembly protein-like n=1 Tax=Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1
          RepID=Q5ZTR9_LEGPH
          Length = 97

 Score = 45.0 bits (105), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 1/76 (1%)

Query: 6  NKLKKYRFPETLTNQSRWFGLPLDELIP-AAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
             +KY+ P+ L    R     LDE++  A     +G     ++  +       F +K++
Sbjct: 2  EDPRKYKTPQYLNEPYRLIIFTLDEVMVGALTLYVFGAVCGFFVTSLILTCAFLFLMKRM 61

Query: 65 KKGRGSSWLRDLIYWY 80
          K   G  +   L YW+
Sbjct: 62 KGNEGPYFYIHLFYWF 77


>UniRef50_B7XGQ4 Putative pilus assembly protein n=2 Tax=Pseudomonas
          RepID=B7XGQ4_PSEPU
          Length = 95

 Score = 43.9 bits (102), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          + P  +          LDE++P  I +  G+  ++ +      +L+    ++    R   
Sbjct: 6  KIPAYIDQPPHVMFWRLDEVMPIGIGLVAGVLLAQLILCTVVGLLLARFYRRFCDNRPDG 65

Query: 72 WLRDLIYWY 80
          +L   IYW+
Sbjct: 66 FLLHAIYWH 74


>UniRef50_Q1MXI3 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1MXI3_9GAMM
          Length = 95

 Score = 43.9 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
           + Y  P TL +   +F   +D  +     +   +  S  + G   ++ +     ++K+ 
Sbjct: 4  SENYWIPRTLEDPPLFFVWEMDTAVVFLTSMIIFLLFSSPIIGFFVSLWLSKSYARVKEQ 63

Query: 68 RGSSWLRDLIYWYMPTALLR 87
           G S     +YWY+P  L +
Sbjct: 64 GGVSLFGSFLYWYLPVDLSK 83


>UniRef50_C4NVT5 TraL n=27 Tax=Gammaproteobacteria RepID=C4NVT5_ECOLX
          Length = 93

 Score = 43.5 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          + P  +           DEL P  + +  G+   K L      +LV    ++ +      
Sbjct: 5  KIPRRVDEPPHLLLWSADELAPMLLGLTIGVIIGKALICFLGGLLVTNLYRRFRDNHPDG 64

Query: 72 WLRDLIYW 79
          +L  +IYW
Sbjct: 65 YLLHMIYW 72


>UniRef50_C0QUX5 Type IV conjugative transfer system protein TraL n=1
          Tax=Persephonella marina EX-H1 RepID=C0QUX5_PERMH
          Length = 98

 Score = 42.3 bits (98), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          M G     K Y  P+ + +      +P+D  + +A        +     G        F 
Sbjct: 1  MEGKAEGRKVYPIPKYIDDLPEVVFIPIDIFLISATAFMIAFVSFNPFIGAIVGPATGFA 60

Query: 61 IKKLKKGRGSSWLRDLIY 78
              +KG+  ++L  + Y
Sbjct: 61 YYHFRKGKPRNFLHLIFY 78


>UniRef50_A1W659 TraL family protein n=3 Tax=Betaproteobacteria RepID=A1W659_ACISJ
          Length = 99

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSK---YLFGIGAAVLVYFGIKKLKKGR 68
            P  L +Q +     +D   P  +    G  ++    +   + A + V   I +LK  +
Sbjct: 6  YIPRRLDDQWKIGFWDVDVAAPIVLAFFIGYLSASKAAFAVCMAAGIAVSRWIARLKSDK 65

Query: 69 GSSWLRDLIYWYMP 82
            ++    +YW++P
Sbjct: 66 HPAFALHWLYWHLP 79


>UniRef50_Q8L279 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae
          RepID=Q8L279_PROVU
          Length = 94

 Score = 40.8 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/70 (15%), Positives = 28/70 (40%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          +   ++ +  + F   +DE +P    +  GI T + L  +   +++        +    +
Sbjct: 5  KISHSVDDPQKIFFWTIDEALPFFFFLMLGIFTGRILTFVIIGIVITRYYGSFLQRASEN 64

Query: 72 WLRDLIYWYM 81
          +   L YW +
Sbjct: 65 YFLHLCYWNL 74


>UniRef50_D2U0R5 Conjugative transfer pilus assembly protein TraL n=1
          Tax=Arsenophonus nasoniae RepID=D2U0R5_9ENTR
          Length = 95

 Score = 39.2 bits (90), Expect = 0.038,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 30/78 (38%)

Query: 13 FPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSSW 72
             ++    R F   +DEL P  + +G G+ T + +  +   +++     +        +
Sbjct: 7  ISHSVDAPPRMFFWTVDELFPFMVMLGVGVVTGRLILMVIIGLVLSKIYGRFLDKASDKY 66

Query: 73 LRDLIYWYMPTALLRGIF 90
          L  L+YW       +  F
Sbjct: 67 LAHLVYWRFGFGSHKVTF 84


>UniRef50_B7J826 Type IV conjugative transfer system protein TraL n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7J826_ACIF2
          Length = 92

 Score = 38.9 bits (89), Expect = 0.051,   Method: Composition-based stats.
 Identities = 12/71 (16%), Positives = 22/71 (30%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
          ++  R P    +Q +     +D L    +    G    +    +  A        K K  
Sbjct: 1  MQPVRIPNHFDDQRQILFWDIDTLAVVIMFFIIGYVLRELTIMMVLAFFAGHLFSKWKTN 60

Query: 68 RGSSWLRDLIY 78
          + +  L  L Y
Sbjct: 61 QLNGVLIHLSY 71


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI          103   3e-21
UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2...   102   3e-21
UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TR...    97   2e-19
UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL...    95   5e-19
UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae R...    92   7e-18
UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID...    89   4e-17
UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL...    85   6e-16
UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 Rep...    85   8e-16
UniRef50_B6ESX4 Conjugative transfer protein TraL n=5 Tax=Vibrio...    84   1e-15
UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=...    82   5e-15
UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvula...    82   5e-15
UniRef50_B4RLS4 TraL n=8 Tax=Neisseria gonorrhoeae RepID=B4RLS4_...    80   2e-14
UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL...    77   1e-13
UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL...    76   4e-13
UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio ...    75   5e-13
UniRef50_B7XGQ4 Putative pilus assembly protein n=2 Tax=Pseudomo...    75   6e-13
UniRef50_Q1MXI3 Putative uncharacterized protein n=1 Tax=Bermane...    73   2e-12
UniRef50_C4NVT5 TraL n=27 Tax=Gammaproteobacteria RepID=C4NVT5_E...    73   3e-12
UniRef50_Q3IUW9 TraL n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID...    72   5e-12
UniRef50_A5KZF2 Putative conjugative transfer protein TraL n=1 T...    72   8e-12
UniRef50_Q5ZTR9 Hypothetical sex pilus assembly protein-like n=1...    70   2e-11
UniRef50_A8QYP6 TraL protein n=2 Tax=Legionellaceae RepID=A8QYP6...    68   1e-10
UniRef50_A4JTP5 Pilus assembly protein n=2 Tax=Burkholderiales R...    66   3e-10

Sequences not found previously or not previously below threshold:

UniRef50_A1W659 TraL family protein n=3 Tax=Betaproteobacteria R...    61   1e-08
UniRef50_A1WDG0 TraL n=3 Tax=Burkholderiales RepID=A1WDG0_ACISJ        61   1e-08
UniRef50_Q8L279 Pilus biogenesis protein n=2 Tax=Enterobacteriac...    57   1e-07
UniRef50_D2U0R5 Conjugative transfer pilus assembly protein TraL...    56   5e-07
UniRef50_C0QUX5 Type IV conjugative transfer system protein TraL...    55   1e-06
UniRef50_B2I3Y6 TraL n=2 Tax=Acinetobacter RepID=B2I3Y6_ACIBC          52   5e-06
UniRef50_B7J826 Type IV conjugative transfer system protein TraL...    50   3e-05
UniRef50_Q5NX49 Pilus assembly protein n=1 Tax=Aromatoleum aroma...    46   4e-04
UniRef50_C1SHE6 Type IV conjugative transfer system protein TraL...    43   0.004
UniRef50_Q2LTZ5 Hypothetical membrane protein n=3 Tax=Deltaprote...    41   0.009

>UniRef50_P08321 Protein traL n=55 Tax=root RepID=TRAL1_ECOLI
          Length = 91

 Score =  103 bits (256), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 91/91 (100%), Positives = 91/91 (100%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG
Sbjct: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91
          IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS
Sbjct: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIFS 91


>UniRef50_D1ZXH1 Whole genome shotgun sequence assembly, contig_2878 n=1
           Tax=Sordaria macrospora RepID=D1ZXH1_SORMA
          Length = 303

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 43/78 (55%)

Query: 8   LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
           + +Y  P  L +        LDE +  AI   WGI +   + G+  ++L ++G +KLK G
Sbjct: 99  MDRYTIPSHLDDPELIGFWTLDEFLAMAIPFIWGILSQHVVIGLMVSLLGWWGFRKLKAG 158

Query: 68  RGSSWLRDLIYWYMPTAL 85
           + +SW+  + YW++P++ 
Sbjct: 159 KATSWILHMAYWHLPSSF 176


>UniRef50_P12058 Protein traL n=7 Tax=Enterobacteriaceae RepID=TRAL_SALTI
          Length = 101

 Score = 96.6 bits (239), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/87 (48%), Positives = 58/87 (66%)

Query: 4  DENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKK 63
          + N L KYRFP+TL+ Q+R  GLPLDE IPAA+ + WG  T KYLF +  A +++  I+ 
Sbjct: 2  EGNDLDKYRFPKTLSEQNRIIGLPLDEAIPAAVVLLWGFFTKKYLFSLIIAAVIWQLIRA 61

Query: 64 LKKGRGSSWLRDLIYWYMPTALLRGIF 90
           K G+ S WL +  YWY+PT L R ++
Sbjct: 62 AKCGKSSRWLYNWCYWYLPTELFRVVY 88


>UniRef50_A5VGQ7 Type IV conjugative transfer system protein TraL n=11
          Tax=Sphingomonadales RepID=A5VGQ7_SPHWW
          Length = 101

 Score = 95.4 bits (236), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 38/85 (44%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          M G      KY  P  L +        LDE +   I   WGI +   L G   A   ++G
Sbjct: 1  MEGGAMSADKYVIPTHLDDPELIGLWTLDEFLAMVIPFTWGILSQHILIGTLLAGAGWWG 60

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTAL 85
          +K+ K GR +SWL  + YW++P   
Sbjct: 61 LKRAKAGRAASWLLHMAYWHLPAGF 85


>UniRef50_A4WGS1 TraL family protein n=2 Tax=Enterobacteriaceae RepID=A4WGS1_ENT38
          Length = 101

 Score = 91.6 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 3/90 (3%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSG+E+   KY FPETL  Q R+FGLPLDE+I  A  I  G+  +        A L++  
Sbjct: 2  MSGEED---KYYFPETLNQQERYFGLPLDEIIIVAPLIILGVLNNMSTELSIIAGLLWAS 58

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTALLRGIF 90
          ++ LKKG+GS WL +  YW++P+ L +  F
Sbjct: 59 VRYLKKGQGSFWLLNFCYWHLPSLLFKVTF 88


>UniRef50_B6ICF1 TraL protein n=1 Tax=Escherichia coli SE11 RepID=B6ICF1_ECOSE
          Length = 99

 Score = 89.2 bits (220), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          MSG+     +Y FP+TLT Q R  G+PLDE          GI  ++ L G+   +L +F 
Sbjct: 1  MSGEVE--DRYIFPQTLTEQKRLIGIPLDEASVGLTPACVGIYFNQSLVGLIVGLLFWFA 58

Query: 61 IKKLKKGRGSSWLRDLIYWYMP 82
          +   KKG+G+SWL ++ YW++P
Sbjct: 59 LTHFKKGKGTSWLFNMCYWHLP 80


>UniRef50_A9L6B5 Type IV conjugative transfer system protein TraL n=6
          Tax=Shewanella baltica RepID=A9L6B5_SHEB9
          Length = 100

 Score = 85.0 bits (209), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N  + +  P+ L N     G  +DEL+PA +        +  L G+  A   + G++++
Sbjct: 2  DNPTQFFSIPKHLNNTPTLLGFAMDELVPALVFFAVLFMMNHALIGMVLASSWFLGMRRM 61

Query: 65 KKGRGSSWLRDLIYWYMPTALL 86
          K   G S LR   YWY P    
Sbjct: 62 KSQYGMSVLRLTAYWYAPAEFS 83


>UniRef50_Q0F357 TraL n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F357_9PROT
          Length = 101

 Score = 84.6 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 2/85 (2%)

Query: 3  GDENKLKKY--RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          G  +  ++   R P  L +  ++     D+ +     IG+ I  +  + G    V+    
Sbjct: 2  GGMDSQERLGLRMPRHLDDPEKFLWWDFDQALIVVAIIGFSIVVNMVIAGAILGVIAGMA 61

Query: 61 IKKLKKGRGSSWLRDLIYWYMPTAL 85
          I +LK GRG  +L    YWY+P  +
Sbjct: 62 IGRLKSGRGRGYLVHTAYWYLPVDM 86


>UniRef50_B6ESX4 Conjugative transfer protein TraL n=5 Tax=Vibrionales
          RepID=B6ESX4_ALISL
          Length = 100

 Score = 84.2 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 39/87 (44%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          E+    Y  P+ L       GLP  E++PA +           L G+   V+ + G++ +
Sbjct: 2  EDPHLFYAIPKHLNKGKTIVGLPQSEVLPALLLFAVFFIAKHQLIGLVIGVVWFAGLRII 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIFS 91
          K   G + +   ++WY  T + + +F+
Sbjct: 62 KTKYGDNIIPLALHWYGSTHVNQHLFT 88


>UniRef50_D2U004 Conjugal transfer pilus assembly protein TraL n=1
          Tax=Arsenophonus nasoniae RepID=D2U004_9ENTR
          Length = 98

 Score = 82.3 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
           +   +Y+FP TLT+Q R+ GLP+DE++     I   I  + ++F    A+  + G+++L
Sbjct: 1  MDAASRYQFPTTLTHQRRFCGLPMDEVVVYLPLIICTIFVNMWIFAPALAIA-FVGLRRL 59

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIFS 91
          K+G+GSS+L  L YW +PT+++R   +
Sbjct: 60 KQGKGSSYLLGLAYWCLPTSIMRFFIT 86


>UniRef50_A3VN27 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis
          HTCC2503 RepID=A3VN27_9PROT
          Length = 97

 Score = 82.3 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 38/80 (47%)

Query: 7  KLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKK 66
          +  + R P TL    +     +DE I        GI  S+++ GI A  +  + +KK KK
Sbjct: 3  QTDRTRIPATLDEPEKLAFWTIDEFIVLIGGFMLGIVLSRFVEGILAGFVGVWALKKFKK 62

Query: 67 GRGSSWLRDLIYWYMPTALL 86
          G   + LR   YW +P++L 
Sbjct: 63 GESLNLLRYAAYWVLPSSLF 82


>UniRef50_B4RLS4 TraL n=8 Tax=Neisseria gonorrhoeae RepID=B4RLS4_NEIG2
          Length = 93

 Score = 80.0 bits (196), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 35/75 (46%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
          ++ Y  P ++ +  + F   LD  I      G GI +  +   +  ++ + +   KLK G
Sbjct: 1  MRDYHVPVSIDDPKKAFIWDLDVFILFMSGFGIGIVSRHFFISMSISLFIAWRWGKLKSG 60

Query: 68 RGSSWLRDLIYWYMP 82
          +   +   ++YWY+P
Sbjct: 61 KHQWFFLHVLYWYLP 75


>UniRef50_C5SIK1 Type IV conjugative transfer system protein TraL n=1
          Tax=Asticcacaulis excentricus CB 48 RepID=C5SIK1_9CAUL
          Length = 93

 Score = 77.3 bits (189), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 40/77 (51%)

Query: 10 KYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRG 69
            R P+ L    R+F    DEL+   + +G     + +L G+ A +  ++ +++LKKG  
Sbjct: 2  DTRIPQYLDEPERYFIFTPDELVVVVVPLGILTIVANFLIGLVAGLTAFWLLRRLKKGGS 61

Query: 70 SSWLRDLIYWYMPTALL 86
           + L  L++W +P  ++
Sbjct: 62 LTRLLWLMFWILPYEVM 78


>UniRef50_C8QDT2 Type IV conjugative transfer system protein TraL n=2 Tax=Pantoea
          sp. At-9b RepID=C8QDT2_9ENTR
          Length = 100

 Score = 75.8 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/86 (40%), Positives = 53/86 (61%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          + +  +Y+FPETL  Q R  GLP +E +    C G G+    ++  +  A  ++  I+ L
Sbjct: 2  DRESLQYQFPETLNQQKRILGLPTEEAVVIVACAGIGLLCDMFIVMLVVAGALWLLIRHL 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIF 90
          KKG+G+ WL +L+YWY+PTALLR  F
Sbjct: 62 KKGQGTWWLLNLLYWYLPTALLRLQF 87


>UniRef50_Q8D6A4 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus
          RepID=Q8D6A4_VIBVU
          Length = 100

 Score = 75.4 bits (184), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          +N+   +  P+ L+   R  GLP DE++P  +         KYL G+  A + + G++ +
Sbjct: 2  DNQQLFFAIPKHLSKGKRISGLPRDEVLPGFLLFVLFFLAGKYLIGLIFAAIWFIGLRYI 61

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIF 90
          K   G + +   +YW+  T+L   +F
Sbjct: 62 KVQYGENIIALTLYWWGNTSLNHSVF 87


>UniRef50_B7XGQ4 Putative pilus assembly protein n=2 Tax=Pseudomonas
          RepID=B7XGQ4_PSEPU
          Length = 95

 Score = 75.0 bits (183), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 13/69 (18%), Positives = 28/69 (40%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          + P  +          LDE++P  I +  G+  ++ +      +L+    ++    R   
Sbjct: 6  KIPAYIDQPPHVMFWRLDEVMPIGIGLVAGVLLAQLILCTVVGLLLARFYRRFCDNRPDG 65

Query: 72 WLRDLIYWY 80
          +L   IYW+
Sbjct: 66 FLLHAIYWH 74


>UniRef50_Q1MXI3 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri
          RepID=Q1MXI3_9GAMM
          Length = 95

 Score = 73.4 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 33/80 (41%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKG 67
           + Y  P TL +   +F   +D  +     +   +  S  + G   ++ +     ++K+ 
Sbjct: 4  SENYWIPRTLEDPPLFFVWEMDTAVVFLTSMIIFLLFSSPIIGFFVSLWLSKSYARVKEQ 63

Query: 68 RGSSWLRDLIYWYMPTALLR 87
           G S     +YWY+P  L +
Sbjct: 64 GGVSLFGSFLYWYLPVDLSK 83


>UniRef50_C4NVT5 TraL n=27 Tax=Gammaproteobacteria RepID=C4NVT5_ECOLX
          Length = 93

 Score = 73.1 bits (178), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          + P  +           DEL P  + +  G+   K L      +LV    ++ +      
Sbjct: 5  KIPRRVDEPPHLLLWSADELAPMLLGLTIGVIIGKALICFLGGLLVTNLYRRFRDNHPDG 64

Query: 72 WLRDLIYW 79
          +L  +IYW
Sbjct: 65 YLLHMIYW 72


>UniRef50_Q3IUW9 TraL n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUW9_RHOS4
          Length = 96

 Score = 71.9 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 32/75 (42%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          +  + L  Q R    P+DE +      G G+     + GI   ++ Y   K++K   G  
Sbjct: 7  KIEQRLQEQGRILLFPIDEGLALLAPAGVGLAMQAAVAGIILGLVSYVLWKRIKGDGGLE 66

Query: 72 WLRDLIYWYMPTALL 86
           +  L YWY+P  L 
Sbjct: 67 RILALTYWYLPAELS 81


>UniRef50_A5KZF2 Putative conjugative transfer protein TraL n=1 Tax=Vibrionales
          bacterium SWAT-3 RepID=A5KZF2_9GAMM
          Length = 101

 Score = 71.5 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 1/86 (1%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKL 64
          ++K   + FP  L    +  G P+DE++P+ +        ++ L  +   +  +  I+ L
Sbjct: 4  QDKQTLFTFPNYLQTDVKIVGFPIDEILPSILLFLMLFNINR-LVAVAVCIGFFLTIRSL 62

Query: 65 KKGRGSSWLRDLIYWYMPTALLRGIF 90
          K   G  ++   ++WY      + IF
Sbjct: 63 KVRHGPKFIIHFLHWYGDDTANKTIF 88


>UniRef50_Q5ZTR9 Hypothetical sex pilus assembly protein-like n=1 Tax=Legionella
          pneumophila subsp. pneumophila str. Philadelphia 1
          RepID=Q5ZTR9_LEGPH
          Length = 97

 Score = 70.4 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 5  ENKLKKYRFPETLTNQSRWFGLPLDELIP-AAICIGWGITTSKYLFGIGAAVLVYFGIKK 63
              +KY+ P+ L    R     LDE++  A     +G     ++  +       F +K+
Sbjct: 1  MEDPRKYKTPQYLNEPYRLIIFTLDEVMVGALTLYVFGAVCGFFVTSLILTCAFLFLMKR 60

Query: 64 LKKGRGSSWLRDLIYWY 80
          +K   G  +   L YW+
Sbjct: 61 MKGNEGPYFYIHLFYWF 77


>UniRef50_A8QYP6 TraL protein n=2 Tax=Legionellaceae RepID=A8QYP6_9GAMM
          Length = 98

 Score = 67.7 bits (164), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 37/82 (45%)

Query: 6  NKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLK 65
               Y+F   +    R   L +DEL+ A I     I +++ +      + +  G++ LK
Sbjct: 1  MSNMNYQFLNHIDAPKRILTLTMDELVVAGIGFMLLIISNQKILVSLFGLSLLSGLRYLK 60

Query: 66 KGRGSSWLRDLIYWYMPTALLR 87
          KG G   L  L YW +P+ + +
Sbjct: 61 KGEGPKALLVLAYWSLPSMVTQ 82


>UniRef50_A4JTP5 Pilus assembly protein n=2 Tax=Burkholderiales RepID=A4JTP5_BURVG
          Length = 94

 Score = 66.1 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 13 FPETLTNQSRWFGLPLDELIPAAICIGWGITTSKY--LFGIGAAVLVYFGIKKLKKGRGS 70
           P  + NQ + F   LDE I    C+  GI+   Y  L  +   +      K+ K G   
Sbjct: 6  IPRYIDNQPQLFFWELDEAIIFIGCLAGGISLGGYFTLVSMAMGIFAVKAFKRFKNGALE 65

Query: 71 SWLRDLIYWYMPTALLR 87
            L  L YW     L +
Sbjct: 66 GILYHLCYWAGVIGLNK 82


>UniRef50_A1W659 TraL family protein n=3 Tax=Betaproteobacteria RepID=A1W659_ACISJ
          Length = 99

 Score = 61.1 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 8  LKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSK---YLFGIGAAVLVYFGIKKL 64
                P  L +Q +     +D   P  +    G  ++    +   + A + V   I +L
Sbjct: 2  QADTYIPRRLDDQWKIGFWDVDVAAPIVLAFFIGYLSASKAAFAVCMAAGIAVSRWIARL 61

Query: 65 KKGRGSSWLRDLIYWYMPT 83
          K  +  ++    +YW++P 
Sbjct: 62 KSDKHPAFALHWLYWHLPV 80


>UniRef50_A1WDG0 TraL n=3 Tax=Burkholderiales RepID=A1WDG0_ACISJ
          Length = 97

 Score = 60.7 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 30/70 (42%)

Query: 11 YRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGS 70
          +  P  L + +++    +D  +   + +  GI +   + G+   +   F   KLK G+  
Sbjct: 9  HYIPRRLDDGAKFLFWEMDVAMIGLMGVLVGIGSGFPVIGLFLGIGAAFFYGKLKAGKHP 68

Query: 71 SWLRDLIYWY 80
               L+YW+
Sbjct: 69 GMATHLLYWF 78


>UniRef50_Q8L279 Pilus biogenesis protein n=2 Tax=Enterobacteriaceae
          RepID=Q8L279_PROVU
          Length = 94

 Score = 57.3 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 11/78 (14%), Positives = 30/78 (38%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          +   ++ +  + F   +DE +P    +  GI T + L  +   +++        +    +
Sbjct: 5  KISHSVDDPQKIFFWTIDEALPFFFFLMLGIFTGRILTFVIIGIVITRYYGSFLQRASEN 64

Query: 72 WLRDLIYWYMPTALLRGI 89
          +   L YW +  +  +  
Sbjct: 65 YFLHLCYWNLGVSFGKST 82


>UniRef50_D2U0R5 Conjugative transfer pilus assembly protein TraL n=1
          Tax=Arsenophonus nasoniae RepID=D2U0R5_9ENTR
          Length = 95

 Score = 55.7 bits (133), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 28/67 (41%)

Query: 13 FPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSSW 72
             ++    R F   +DEL P  + +G G+ T + +  +   +++     +        +
Sbjct: 7  ISHSVDAPPRMFFWTVDELFPFMVMLGVGVVTGRLILMVIIGLVLSKIYGRFLDKASDKY 66

Query: 73 LRDLIYW 79
          L  L+YW
Sbjct: 67 LAHLVYW 73


>UniRef50_C0QUX5 Type IV conjugative transfer system protein TraL n=1
          Tax=Persephonella marina EX-H1 RepID=C0QUX5_PERMH
          Length = 98

 Score = 54.6 bits (130), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 14/78 (17%), Positives = 27/78 (34%)

Query: 1  MSGDENKLKKYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFG 60
          M G     K Y  P+ + +      +P+D  + +A        +     G        F 
Sbjct: 1  MEGKAEGRKVYPIPKYIDDLPEVVFIPIDIFLISATAFMIAFVSFNPFIGAIVGPATGFA 60

Query: 61 IKKLKKGRGSSWLRDLIY 78
              +KG+  ++L  + Y
Sbjct: 61 YYHFRKGKPRNFLHLIFY 78


>UniRef50_B2I3Y6 TraL n=2 Tax=Acinetobacter RepID=B2I3Y6_ACIBC
          Length = 97

 Score = 52.3 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 8/88 (9%)

Query: 11 YRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGS 70
          +  P  +  +S++     D  + + +    G        G      + +   K K G   
Sbjct: 9  HYVPTYIDAKSKFLMFDQDVALASFLIFILGFVFGHPFLGFFVGFAIAYYFNKAKAGLHP 68

Query: 71 SWLRDLIYWY--------MPTALLRGIF 90
           ++  L YW         +P +  R  F
Sbjct: 69 DYMLHLTYWVANSPKLKELPESNNRHFF 96


>UniRef50_B7J826 Type IV conjugative transfer system protein TraL n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7J826_ACIF2
          Length = 92

 Score = 50.0 bits (118), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          R P    +Q +     +D L    +    G    +    +  A        K K  + + 
Sbjct: 5  RIPNHFDDQRQILFWDIDTLAVVIMFFIIGYVLRELTIMMVLAFFAGHLFSKWKTNQLNG 64

Query: 72 WLRDLIY---WYMPTALLR 87
           L  L Y   W+    + +
Sbjct: 65 VLIHLSYRFGWWRINDVFK 83


>UniRef50_Q5NX49 Pilus assembly protein n=1 Tax=Aromatoleum aromaticum EbN1
          RepID=Q5NX49_AZOSE
          Length = 96

 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 13 FPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYL---FGIGAAVLVYFGIKKLKKGRG 69
           P  + +Q +++    DE I        GI +   +    G+   ++    +++ K+G  
Sbjct: 7  IPRYVDSQQQFYAWEFDEFIVGFTLFSVGILSRSTIGLFLGVAVMLISIRIMRRWKEGEL 66

Query: 70 SSWLRDLIY 78
             +  + Y
Sbjct: 67 EGAITHVFY 75


>UniRef50_C1SHE6 Type IV conjugative transfer system protein TraL n=1
          Tax=Denitrovibrio acetiphilus DSM 12809
          RepID=C1SHE6_9BACT
          Length = 89

 Score = 42.6 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 10 KYRFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRG 69
          +   P+ L    +   L  DE +  A  +  G+   K +      ++++F  +K K+   
Sbjct: 2  RSYVPQYLHKPVKIMMLDSDEFVILANGVLVGVLL-KSIVLFILVLVIFFIYRKGKEKHP 60

Query: 70 SSWLRDLIY 78
            + R + +
Sbjct: 61 RGFFRHIPH 69


>UniRef50_Q2LTZ5 Hypothetical membrane protein n=3 Tax=Deltaproteobacteria
          RepID=Q2LTZ5_SYNAS
          Length = 102

 Score = 41.5 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 12 RFPETLTNQSRWFGLPLDELIPAAICIGWGITTSKYLFGIGAAVLVYFGIKKLKKGRGSS 71
          RFP+ L+   +      DEL     C  + +    + + +    +  +   + KK     
Sbjct: 18 RFPQYLSAPLQVLWFEPDELGVVFTCFLFALIYGSFSWALLF--IAPWQYSRAKKRYPKG 75

Query: 72 WLRDLIY 78
          + R  +Y
Sbjct: 76 FFRHFLY 82


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.317    0.145    0.412 

Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,897,969
Number of Sequences: 3077464
Number of extensions: 17583254
Number of successful extensions: 76654
Number of sequences better than 1.0e-01: 41
Number of HSP's better than  0.1 without gapping: 73
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 76561
Number of HSP's gapped (non-prelim): 87
length of query: 91
length of database: 1,040,396,356
effective HSP length: 61
effective length of query: 30
effective length of database: 852,671,052
effective search space: 25580131560
effective search space used: 25580131560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 87 (38.0 bits)
