Phyre 2 alignment of P08321 with c1afoB_

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Job Description | P08321
Confidence | 1.92% | Date | Thu Jan 5 11:01:04 GMT 2012
Rank | 49 | Aligned Residues | 31
% Identity | 29% | Template | c1afoB_
PDB info | PDB header:integral membrane protein | Chain: B: PDB Molecule:glycophorin a; | PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 33 | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | A | A | I | C | I | G | W | G | I | T | T | S | K | Y | L | F | G | I | G | A | A | V | L | V | Y | F | G | I | K | K | L | K | K | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | E | I | T | L | I | I | F | G | V | M | A | G | . | . | V | I | G | T | I | . | . | L | L | I | S | Y | G | I | R | R | L | I | K | K
Template Known Secondary structure |  | S |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 71 | . | . | . | . | . | . | . | . | 80 | . | . | . |  |  | . | . | . | . | . |  |  | . | 90 | . | . | . | . | . | . | . | . | . | 100 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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