HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/2777cb826fe15252/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/2777cb826fe15252/query.hhm DATE Fri Jan 13 03:08:31 2012 LENG 106 match states, 106 columns in multiple alignment FILT 104 out of 179 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4216 -0.0178 SEQ >ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHCCCCEEEECHHHHHCCCHHHHHHHHHHHH HHHCCC >ss_conf 9861599996474008999999999998549828999857989997225578999842899879999997289939988778996059999999999999 850589 >Consensus mxmkkIlLxCxxGxSTsxlxxkmxxxaxxxxxxxxixAxxxxxxxxxxxxxDviLLaPQvxxxxxxixxxxxxxpVxxIxxxxYgxmdgxxilxxaxxxl xxxxxn >batch____ MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAI KKAAAN >UniRef50_C9AX29(3-92:95) Predicted protein n=2 Tax=Enterococcus casseliflavus RepID=C9AX29_ENTCA E=8e-07 s/c=0.61 id=20% cov=86% ----QIGLFCATGLSSALLVKAIKEQLADDQ-HYQVNSAPFSEIFMVGNDYDFLILAPQTRFNQAKVAAAFPDKKIVLLTDEEFLSKNVARIVEE----- ------ >UniRef50_Q4L869(479-583:583) Lactose-specific phosphotransferase enzyme IIB component n=15 Tax=Bacteria RepID=PTLCB_STAHJ E=2e-16 s/c=0.83 id=22% cov=96% -EQTNVLVLCAGGGTSGLLANALNKAAEEYQVPVKAAAGGYGAHMDIMKDYQLIILAPQVASNYEDIKQDTDrlGIKLAKTQGVEYINLtrDGKAALDFV QQQFEK---- >UniRef50_B8DCB9(1-133:134) PTS system, Lactose/Cellobiose specific IIB subunit subfamily n=17 Tax=Listeria RepID=B8DCB9_LISMH E=3e-15 s/c=0.62 id=23% cov=98% --MQTLMIVCAGGATSSLMAQNVVKSATSEGMDAVllfpddvkykdsflekyserdlvvvmgpVGAITAGKFRDYKEQVDAVLVAPQVKYMYKTVEEVLG elNIPCANIDSLDFGRMRGDKILTQGLALMDAKNS- >UniRef50_Q03SY8(1-98:106) Cellobiose-specific PTS system IIC component n=1 Tax=Lactobacillus brevis ATCC 367 RepID=Q03SY8_LACBA E=2e-12 s/c=0.75 id=23% cov=92% --MKNVLLLSGNENSSHLFLGEAKRTAETRHMPLNFSAASVQDLTpDMLAEQDLVLLAPR-AVNQAEVTTLKAQVPTMTIPNDIYGWLNGQALVKFACEK L------ >UniRef50_C3RNH9(107-213:214) Predicted protein n=2 Tax=Bacteria RepID=C3RNH9_9MOLU E=3e-17 s/c=0.84 id=23% cov=96% ----KIILCCSGGLSSSFFANKLAELISLKHLNYEIIPLGFYQLNSSYLDCDAIYLAPQISYLEPQAMNIVKNtVPVHCVTPSVYATYNYRGLLDMItne nISKTKENGT- >UniRef50_C3RQX8(1-92:93) Predicted protein n=2 Tax=Bacteria RepID=C3RQX8_9MOLU E=2e-12 s/c=0.80 id=14% cov=80% --------CCSSGLTTAMFAQMLQDFSNNNHLPYHFSATSIYDDDTLSKEYDLVLMAPQVQHYTKSMAAKY-HKRFLIMNPVDFAQYNCNNIV------- ------ >UniRef50_C3RQI6(1-102:136) Putative uncharacterized protein n=2 Tax=Bacteria RepID=C3RQI6_9MOLU E=2e-16 s/c=0.85 id=21% cov=94% --MLKILICCGGGFSSSYVTERMKKEVVEKGLqeEVYLEFYPFSLVKEKEADFDIIMCCPHLKiYVERLLQETTISVPIYLLPPKMYGFMQLEEIVADAK DIIE----- >UniRef50_Q6AHH2(2-104:118) PTS system, IIB component n=1 Tax=Leifsonia xyli subsp. xyli RepID=Q6AHH2_LEIXX E=5e-14 s/c=0.77 id=24% cov=96% ----KIVVVCGAGASSAFVAMKLRTAAADRGVDVAVSAGSTEQLAS-LDGIDIVLVGAHLESSVPALRDRTAgtGTAIVVLPPVSPAALDGAWTLDLALG AKRDRRAN >UniRef50_C8PBB7(3-104:104) Putative uncharacterized protein n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBB7_9LACO E=5e-10 s/c=0.64 id=23% cov=92% ---KKVTIACTTGLSASILVTKIKQLITDDAITIESTTASQIADIIKQQKTDLLLLAPQLAYLRDQVnelilQKSNNKILVRYISIDLYSQLNANQTLEQ IKKIL------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 3259 159 * * * * * * * * * 1 0 * * * * * * 4484 0 0 E 2 1937 * 2895 2146 * 4393 * * 2365 * * 4224 * * * 3589 * * * * 2 83 4165 * 0 * * * 4766 1000 0 K 3 4920 * 6249 4104 * 5608 * * 2859 * 770 * * 4302 * 5770 3610 * * * 3 0 * * * * * * 5745 0 0 K 4 * * * 5190 * * * 2574 793 3035 5874 * * 5876 5987 * 6015 6055 * 5302 4 0 * * * * * * 5959 0 0 H 5 * * * * * * 4733 6397 1218 * * 1843 * 5446 3116 6431 3916 5273 * * 5 0 * * * * * * 6175 0 0 I 6 * * * * * * * 727 * 4233 * * * * * * * 1545 * * 6 0 * * * * * * 6270 0 0 Y 7 6062 6506 * * 5791 5563 * 4073 7071 852 3397 * * * 6452 * 4966 3040 * 4213 7 0 * * * * * * 6288 0 0 L 8 6164 6337 * * * * * 2307 * 676 5099 * * * * * * 3102 * * 8 0 * * * * * * 6288 0 0 F 9 2846 2510 * * 3697 * 5402 3014 * 2677 5794 * * * * 4821 * 1994 * * 9 0 * * * * * * 6316 0 0 C 10 * 71 * * * * * * * * * * * * * 4383 * * * * 10 0 * * * * * * 6316 0 0 S 11 1851 * 5041 4682 6627 2093 * * * 5977 5842 3738 * 5450 * 2436 4212 4680 * * 11 0 * * * * * * 6316 0 0 A 12 1643 6731 * 6440 4176 1952 * * * 5797 * 3630 * 4907 * 3078 3553 * 6718 * 12 30 5619 * 2000 415 * * 6316 1000 0 G 13 4842 * * 5389 * 87 * * * * * * * * * * * * * * 13 13 6836 * 0 * * * 6324 1000 0 M 14 2582 * * * 3946 4346 * 2845 * 2908 1574 4662 * * * 5632 5997 5534 * 6182 14 0 * * * * * * 6324 0 0 S 15 3960 * * * * 4649 * * * * 5414 * * * * 658 2068 * * * 15 0 * * * * * * 6324 0 0 T 16 4057 * * * * * * * * * * 5715 * * * 1353 917 * * * 16 0 * * * * * * 6357 0 0 S 17 4196 * 4884 5233 * 2766 4682 * 6042 * * 4384 * 4692 * 867 4352 * * * 17 39 5235 * 0 * * * 6357 1984 0 L 18 5410 * * * 2984 * * 2377 * 1790 2706 6052 * 6007 6081 4966 6131 4293 * 3786 18 0 * * * * * * 6381 0 0 L 19 * * * * 3023 * * 3449 * 1014 2525 * * * * * * 3101 * * 19 0 * * * * * * 6342 0 0 V 20 1459 5442 * * * * * 4836 5790 3803 3916 * * * 6805 6165 4601 1481 * * 20 0 * * * * * * 6342 0 0 S 21 5469 * 3915 3213 * 5005 6097 6930 1839 5479 5565 2779 * 3089 6165 3770 4528 6061 * 5830 21 61 4587 * 0 * * * 6342 2068 0 K 22 3896 6430 5554 5472 * * * * 982 6440 6388 3268 * 5254 3262 3621 5686 * * 6281 22 20 6188 * 0 * * * 6430 1623 0 M 23 4059 * * * * 6514 * 2360 * 2371 1147 * * * * * * 3483 * * 23 37 6039 6584 4087 87 * * 6517 1000 0 R 24 6512 * 5721 3005 * 6431 6793 5213 1669 6106 5865 3848 * 2888 2844 4496 4541 6767 * 6436 24 30 5608 * 1258 781 0 * 6514 1563 1000 A 25 4055 * 3807 2172 * * 6207 6610 1776 5678 6181 4983 * 3118 4266 4185 4829 6880 * * 25 0 * * * * * * 6517 0 0 Q 26 1840 * 6083 2818 4541 6057 5878 4994 5531 3620 7245 5951 * 5042 6857 4862 4935 3462 * 2886 26 0 * * * * * * 6517 0 0 A 27 1067 5188 6039 * 5666 * 6572 3087 * 2939 4892 * * * 6888 4147 6606 3654 * 6230 27 25 5842 * 2000 415 * * 6517 1547 0 E 28 3610 * 3341 2265 * 6914 * 3999 2244 6516 * 5222 6427 3757 4677 4294 3821 4742 * 6985 28 0 * * * * * * 6658 0 0 K 29 4125 * 4060 1899 6891 4514 * 5448 1843 4737 6914 5608 6925 6473 6015 3927 4673 4687 * 5992 29 14 6719 * 2000 415 * * 6658 1000 0 Y 30 5420 * 2863 4088 6764 6453 4530 7424 3027 3762 6585 3042 * 3064 2753 6134 * 5176 * 3783 30 24 * 5945 * * * * 6658 0 0 E 31 5412 * 4164 3267 * 1405 4057 * 4035 * * 2379 * 4282 6364 4363 * 6170 * * 31 67 7215 4694 2000 415 * 0 6659 1000 1553 V 32 5464 6628 * 4905 6195 * * 2310 3546 2071 3715 6233 * 4493 * 6241 6418 2566 6301 4193 32 59 5169 6323 589 1577 543 1672 6920 1734 3044 P 33 4558 * 1678 2752 * 5874 6525 * 4060 * * 3910 2333 5301 6896 4887 4349 6545 * 5926 33 0 * * * * 619 1519 6646 0 1977 V 34 3723 3694 * 5987 4548 6837 6063 2968 * 2996 5097 * 7243 * * 6672 6538 2170 4317 2451 34 0 * * * * * 0 6645 0 1000 I 35 5228 * 3479 2725 5352 * 4684 3690 3458 6287 5349 3630 6705 3347 5313 3912 3434 4373 * 4567 35 29 5627 * 4064 89 0 * 6645 1668 1000 I 36 4098 6015 * * 3393 * * 1285 * 4322 6719 * * * * 5192 5878 1659 * * 36 0 * * * * * * 6658 0 0 E 37 4484 * 3701 1965 6214 6738 4831 3537 3578 5992 5931 4139 * 4153 * 3725 4148 6365 5441 3604 37 20 * 6194 * * * * 6658 0 0 A 38 659 4749 * 6935 5957 6508 6958 * 7241 * 6335 * 5245 4804 * 3148 4140 5577 * 6098 38 16 6530 * 1000 1000 * 0 6631 1000 1000 F 39 2788 3671 * * 3831 4395 7085 3523 4322 4536 7213 * * * 4758 4256 4321 2415 5476 3115 39 0 * * * * * 0 6631 0 1000 P 40 3237 * 4586 6530 * 2411 6615 * 5759 6775 * 4559 2516 * * 1626 3746 * * * 40 0 * * * * 0 * 6631 0 1000 E 41 3783 * 5783 3106 3287 6790 * 3028 5232 3471 6096 5700 5099 5026 6626 4651 3620 2950 6699 3679 41 8 7439 * 2000 415 * * 6658 1000 0 T 42 2894 6117 3904 3526 * 2988 4750 4670 7179 4581 4853 3937 * 5609 * 2268 3777 5941 * 5107 42 12 6909 * 1000 1000 * * 6658 1000 0 L 43 3578 * 3389 1858 * 5925 6931 6658 3194 4848 * 5221 * 3103 3580 3262 5771 5868 * * 43 16 6478 * 1000 1000 * * 6658 1000 0 A 44 3061 * 5261 * 3154 5748 4369 2233 * 2286 6087 6644 * * * 5394 * 2665 * 4302 44 46 5430 6985 2244 342 * * 6658 1697 0 G 45 3161 5804 2832 2286 5631 4577 5019 6178 3039 5918 5901 4458 7380 4791 4843 4695 4393 5677 * 4838 45 50 5605 6201 0 * 0 * 6658 1000 1000 E 46 6674 * 1862 2152 * 5544 * 4790 3625 4843 5265 4118 * 4601 5322 3558 3940 6549 * 7372 46 29 7586 6087 0 * * 0 6632 1000 1000 K 47 4711 * 5177 3562 * 6384 5124 4261 2528 3327 5238 5070 5819 4661 6148 4747 5314 3047 * 2533 47 81 4769 5801 328 2299 969 1032 6614 2127 1704 G 48 2709 5668 5836 4840 5010 2938 * 2577 5154 2239 4889 * * 6134 * 5448 7341 3677 6799 4585 48 101 3882 * 894 1114 1016 984 6591 3092 1612 Q 49 3988 * 2912 2336 6885 3516 * 5143 3582 4953 * 3266 3532 4021 5930 4761 5175 4915 * * 49 41 5149 * 639 1483 0 * 6619 2121 1000 N 50 4319 * 1787 2743 * 4093 7056 * 3093 6866 6686 2404 5771 4467 5500 7424 7230 * * 5494 50 46 5001 * 1000 1000 * * 6658 2196 0 A 51 2480 5743 * * 3966 * * 2752 * 5630 6037 6686 5308 5609 * 6179 4723 3185 5051 1704 51 10 7179 * 1000 1000 * * 6658 1000 0 D 52 * * 261 5394 * * * * 6783 * * 5628 * 4005 * 4873 * 5947 * * 52 0 * * * * * * 6658 0 0 V 53 3195 4266 * * 5929 * * 2318 * 2050 5393 * * * * 5992 * 1672 * 5207 53 0 * * * * * * 6658 0 0 V 54 5305 5074 * * 6345 * * 1303 * 2329 * * * * * * * 1716 * 5383 54 0 * * * * * * 6658 0 0 L 55 * * * * 5767 * * 3628 * 391 3578 * * * * * * 6025 6038 5385 55 20 * 6150 * * * * 6580 0 0 L 56 6405 5910 * * * * * 2896 * 733 5462 * * * * * 4740 2510 * * 56 0 * * * * * 0 6553 0 1000 G 57 1410 5873 * 5445 * 1477 * * * * * * * * * 3025 3298 * * * 57 0 * * * * * 0 6758 0 1000 P 58 4991 * * * * * * * * * 5682 * 92 * * * 6502 * * * 58 0 * * * * * 0 6758 0 1000 Q 59 * * * 6028 * * 2788 * * 5371 * * * 410 4784 6391 6045 * * * 59 24 * 5933 * * * 0 6749 0 1000 I 60 5063 * * 5979 5405 * * 1824 * 2434 5075 5787 * * * 5842 5054 1477 * 6870 60 0 * * * * 846 1172 6708 0 1690 A 61 2192 5944 5881 4309 * 4279 * * 2860 * 5425 * * 4230 1644 3279 * 6836 * * 61 63 4916 6690 576 1603 0 * 6749 1804 1000 Y 62 6899 * * * 1925 5610 3478 * 5509 * 4389 6261 * * 6040 3881 4949 5918 * 1310 62 0 * * * * * 0 6748 0 1000 M 63 3778 * 5499 3345 6945 * 4381 5372 3207 2546 2931 3956 * 4489 3968 5122 5553 4513 * 4349 63 0 * * * * * 0 6748 0 1000 L 64 6254 6548 5471 3110 4235 * * 4686 2254 2528 5468 * * 3218 5492 6124 5331 4633 * 2931 64 0 * * * * 0 * 6748 0 1000 P 65 2827 * 2675 2533 5945 4581 * * 2553 * * 3306 3351 6918 5858 4344 * 6011 * 6375 65 14 6667 * 1000 1000 * * 6758 1000 0 E 66 4733 * 3018 1884 6567 7098 6683 * 2747 4430 6266 4148 * 3545 3916 4389 4169 6345 * 6930 66 31 * 5574 * * * * 6758 0 0 I 67 4218 * * * 4770 * * 1827 6240 1928 4146 * * * * 6865 6933 1933 * 5907 67 41 5157 * 1594 581 * 0 6697 1754 1000 Q 68 2983 * * 2129 * * * 6679 1953 5530 5273 6107 * 2819 3707 6908 4569 4436 * * 68 18 * 6328 * * * 0 6697 0 1000 R 69 2446 * 4551 2297 * 4652 5971 * 2298 6976 6123 4668 6354 3410 4153 4027 5282 * * * 69 26 * 5781 * * 862 1152 6684 0 1656 L 70 3750 * 3868 3749 5115 * * 2340 2982 3259 4947 6015 * 5328 4369 4102 3806 5103 * 4462 70 19 6232 * 1000 1000 532 1698 6697 1000 2205 L 71 2382 3324 6131 6656 3054 6252 * 5212 5838 2731 * 6068 * * * * 3039 2530 * 4452 71 157 4725 3943 971 1030 * 0 6697 2324 1000 P 72 2467 * 3802 3525 * 3420 * 4252 3198 * * 3376 2629 5092 5493 4754 4078 * * * 72 635 1570 5681 969 1032 470 1847 6639 4986 3562 N 73 * 6969 2471 3741 * 2164 3557 * 6052 * * 1921 7000 4324 6113 5130 4687 * * 6630 73 125 3591 * 869 1144 413 2006 6683 3506 2580 K 74 4688 4572 * * * * * 1948 2058 4723 6672 5289 * 6334 5822 6102 3089 2600 * 5679 74 131 3695 6725 669 1430 * 0 6697 3712 1000 P 75 4842 * 6870 * * * 6326 5147 2916 4501 * 5369 711 5988 4594 * 5863 5655 * 6643 75 0 * * * * 865 1149 6689 0 1663 V 76 4869 6516 * * 4883 * * 2320 * 3631 6492 * 6795 * * * 5139 814 * 5478 76 0 * * * * 0 * 6690 0 1000 E 77 2289 * 4071 2869 5886 4924 5543 4248 4664 3279 4152 6246 5581 * 4997 5412 4130 3303 * 5104 77 0 * * * * * * 6751 0 0 V 78 3346 5662 7033 * 6038 * * 3846 5050 2719 5151 4277 6674 4614 * 4169 3701 1636 * 5456 78 28 5692 * 1000 1000 * * 6751 1165 0 I 79 * * * * * * * 456 * 3049 4352 * 6015 * * * 5332 4038 * * 79 23 6014 * 1000 1000 * * 6751 1233 0 D 80 4659 * 1500 4147 * 4793 * * 5009 * * 3973 2191 5000 * 3211 4029 * * * 80 0 * * * * * * 6751 0 0 S 81 4144 6836 4917 * 6268 3861 * 4218 4472 * 2512 4884 1882 4950 * 3172 3680 5701 * * 81 58 5899 5479 2000 415 * * 6751 1000 0 L 82 4691 * 3189 2994 6260 5948 * 7025 3285 4066 4984 6257 6154 2833 3747 4058 6032 2876 * 4579 82 0 * * * * * 0 6729 0 1533 L 83 2842 * 1936 3930 * 6661 4730 3788 6444 3612 4509 5052 6316 5994 * 4575 5244 3004 * 5326 83 0 * * * * 1034 967 6729 0 1533 Y 84 * * * * 2056 * * * * * * * 5914 * * * * * * 429 84 0 * * * * * 0 6742 0 1000 G 85 1984 * * 5780 6305 1017 * 4647 6584 4888 5890 * * * 6017 4538 3995 * * * 85 0 * * * * 0 * 6732 0 1000 K 86 3718 * * * 4896 6445 * 5936 4068 3523 2965 3846 4631 4609 3652 3023 2497 6557 5001 6020 86 31 5570 * 0 * * * 6741 1000 0 V 87 4438 4909 * * 5993 4740 * 5031 6421 1963 1395 4802 * 4485 * * * 4666 * 3867 87 37 5303 * 1000 1000 * * 6740 1354 0 D 88 6355 * 1049 * * 4624 5892 * 5192 * * 1539 6046 5840 4542 * * * * * 88 0 * * * * * * 6740 0 0 G 89 2661 4540 6305 5564 6727 843 * 6013 * 5791 * * 5075 * 6880 5288 6011 3823 * 6102 89 0 * * * * * * 6730 0 0 L 90 2824 * 3481 1775 * 5339 5707 * 3059 5250 * 3532 4018 3600 5037 * * 5277 * * 90 0 * * * * * * 6730 0 0 G 91 2075 * * 3452 * 3988 6532 5104 1567 * * 3817 6475 4731 4743 5066 6527 * 5911 5921 91 0 * * * * * * 6730 0 0 V 92 2773 5885 * * * * * 1589 * 2902 6672 * * * * * 4518 1657 * * 92 0 * * * * * * 6730 0 0 L 93 6004 * * * 4535 * * 3494 * 883 4221 * * * * * 4915 2658 * 3940 93 0 * * * * * * 6723 0 0 K 94 3410 * 2223 2786 * 5894 * 6420 1699 * * 3312 * 4472 6361 5361 6185 6141 * * 94 15 * 6612 * * * * 6700 0 0 A 95 5002 * 3516 4197 2701 * 4249 * 3541 2958 5193 6532 * 1599 * 5085 6911 * * * 95 0 * * * * 0 * 6675 0 1000 A 96 953 6328 * * * 6202 * 1905 * 4194 5857 * * * * 4589 * 3701 * * 96 43 5102 * 1400 687 * * 6151 1569 0 V 97 * 5635 4601 5209 4996 * * 2254 2816 1841 4001 5684 * 3479 * * * 3683 * * 97 0 * * * * * * 6592 0 0 A 98 2988 * 4381 1554 * 5614 6260 * 3255 * 5960 4454 * 4443 4460 2923 5203 5369 * 6516 98 42 5119 * 530 1701 * * 6521 1718 0 A 99 2999 * 5591 3899 6088 * * 3152 3066 1335 4029 5690 * 4757 6567 * * 5970 * * 99 0 * * * * * * 6038 0 0 I 100 4379 * * * 4873 * * 1757 5329 1561 3358 * * * * * 5521 3964 * 3745 100 20 6213 * 0 * * * 6424 1000 0 K 101 * * 3593 2517 * 4220 * * 1401 * 5427 2642 * * 3673 4369 * * * * 101 0 * * * * * * 5679 0 0 K 102 4856 * 4606 1606 * * * * 1038 * * 4623 * 5575 * 5520 5292 * * * 102 0 * * * * * * 5202 0 0 A 103 2718 * * * 4841 * * * 2180 * * 2397 * 4542 3121 2727 * 3416 * * 103 0 * * * * * * 4554 0 0 A 104 3462 * * 4116 * 2561 * * 2099 * * 1651 * * 3592 4404 * * * * 104 0 * * * * * * 4486 0 0 A 105 1453 * * * * * * * 3877 * * 2866 * * * 1856 2705 * * * 105 0 * * * * * * 4166 0 0 N 106 * * * * * * * * * * * 194 * * * 2990 * * * * 106 0 * * 0 * * * 3714 0 0 //