Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	D	A	A	P	R	L	T	F	T	L	R	D	E	E	R	L	M	M	K	I	G	V	F	V	P	I	G	N	N	G	W	L	I	S	T	H	A	P	Q	Y	M	P	T	F	E	L	N	K	A	I	V	Q	K	A	E	H	Y	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																					?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	D	F	A	L	S	M	I	K	L	R	G	F	G	G	K	T	E	F	W	D	H	N	L	E	S	F	T	L	M	A	G	L	A	A	V	T	S	R	I	Q	I	Y	A	T	A	A	T	L	T	L	P	P	A	I	V	A	R	M	A
Secondary structure
SS confidence
Disorder																?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	T	I	D	S	I	S	G	G	R	F	G	V	N	L	V	T	G	W	Q	K	P	E	Y	E	Q	M	G	I	W	P	G	D	D	Y	F	S	R	R	Y	D	Y	L	T	E	Y	V	Q	V	L	R	D	L	W	G	T	G	K	S	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		F	K	G	D	F	F	T	M	N	D	C	R	V	S	P	Q	P	S	V	P	M	K	V	I	C	A	G	Q	S	D	A	G	M	A	F	S	A	R	Y	A	D	F	N	F	C	F	G	K	G	V	N	T	P	T	A	F	A	P	T	A
Secondary structure
SS confidence
Disorder													?		?	?	?																																		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	R	M	K	Q	A	A	E	Q	T	G	R	D	V	G	S	Y	V	L	F	M	V	I	A	D	E	T	D	D	A	A	R	A	K	W	E	H	Y	K	A	G	A	D	E	E	A	L	S	W	L	T	E	Q	S	Q	K	D	T	R	S
Secondary structure
SS confidence
Disorder																																																						?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		G	T	D	T	N	V	R	Q	M	A	D	P	T	S	A	V	N	I	N	M	G	T	L	V	G	S	Y	A	S	V	A	R	M	L	D	E	V	A	S	V	P	G	A	E	G	V	L	L	T	F	D	D	F	L	S	G	I	E	T	F
Secondary structure
SS confidence
Disorder		?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Sequence		G	E	R	I	Q	P	L	M	Q	C	R	A	H	L	P	A	L	T	Q	E	V	A
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3sdo chain B Region: 17 - 378 Aligned: 352 Modelled: 362 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei Phyre2 PDB 1tvl chain A Region: 19 - 378 Aligned: 347 Modelled: 360 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis Phyre2 PDB 1tvl chain A Region: 19 - 378 Aligned: 347 Modelled: 360 Confidence: 100.0% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 3rao chain B Region: 20 - 373 Aligned: 342 Modelled: 354 Confidence: 100.0% Identity: 25% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. Phyre2 PDB 3b9n chain B Region: 17 - 379 Aligned: 362 Modelled: 363 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) Phyre2 PDB 1nqk chain A Region: 18 - 379 Aligned: 341 Modelled: 358 Confidence: 100.0% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Ssud-like monoxygenases Phyre2 PDB 2wgk chain A Region: 20 - 369 Aligned: 338 Modelled: 350 Confidence: 100.0% Identity: 15% PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida Phyre2 PDB 1luc chain A Region: 20 - 371 Aligned: 315 Modelled: 332 Confidence: 100.0% Identity: 11% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 1luc chain B Region: 20 - 365 Aligned: 310 Modelled: 315 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Bacterial luciferase (alkanal monooxygenase) Phyre2 PDB 1z69 chain D Region: 20 - 367 Aligned: 315 Modelled: 334 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 Phyre2 PDB 1ezw chain A Region: 20 - 369 Aligned: 324 Modelled: 336 Confidence: 100.0% Identity: 15% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 2i7g chain A Region: 20 - 371 Aligned: 328 Modelled: 351 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens Phyre2 PDB 3c8n chain B Region: 20 - 370 Aligned: 323 Modelled: 330 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis Phyre2 PDB 1f07 chain A Region: 20 - 368 Aligned: 310 Modelled: 334 Confidence: 100.0% Identity: 17% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 1rhc chain A Region: 18 - 370 Aligned: 324 Modelled: 340 Confidence: 100.0% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: F420 dependent oxidoreductases Phyre2 PDB 2b81 chain D Region: 10 - 370 Aligned: 300 Modelled: 313 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus Phyre2 PDB 1nfp chain A Region: 129 - 371 Aligned: 204 Modelled: 220 Confidence: 99.9% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1fvp chain A Region: 187 - 365 Aligned: 159 Modelled: 166 Confidence: 99.5% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: Bacterial luciferase-like Family: Non-fluorescent flavoprotein (luxF, FP390) Phyre2 PDB 1zlp chain A Region: 328 - 364 Aligned: 36 Modelled: 37 Confidence: 83.4% Identity: 8% PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct Phyre2 PDB 3b8i chain F Region: 328 - 364 Aligned: 36 Modelled: 37 Confidence: 82.5% Identity: 19% PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. Phyre2 1 c3sdoB_ 2 c1tvlA_ 3 d1tvla_ 4 c3raoB_ 5 c3b9nB_ 6 d1nqka_ 7 c2wgkA_ 8 d1luca_ 9 d1lucb_ 10 c1z69D_ 11 d1ezwa_ 12 c2i7gA_ 13 c3c8nB_ 14 d1f07a_ 15 d1rhca_ 16 c2b81D_ 17 d1nfpa_ 18 d1fvpa_ 19 c1zlpA_ 20 c3b8iF_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3sdoB_ 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrilotriacetate monooxygenase; PDBTitle: structure of a nitrilotriacetate monooxygenase from burkholderia2 pseudomallei 2 c1tvlA_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:protein ytnj; PDBTitle: structure of ytnj from bacillus subtilis 3 d1tvla_ 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 4 c3raoB_ 100.0 25 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus atcc 10987. 5 c3b9nB_ 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:alkane monoxygenase; PDBTitle: crystal structure of long-chain alkane monooxygenase (lada) 6 d1nqka_ 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Ssud-like monoxygenases 7 c2wgkA_ 100.0 15 PDB header:oxidoreductase Chain: A: PDB Molecule:3,6-diketocamphane 1,6 monooxygenase; PDBTitle: type ii baeyer-villiger monooxygenase oxygenating2 constituent of 3,6-diketocamphane 1,6 monooxygenase from3 pseudomonas putida 8 d1luca_ 100.0 11 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 9 d1lucb_ 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Bacterial luciferase (alkanal monooxygenase) 10 c1z69D_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:coenzyme f420-dependent n(5),n(10)- PDBTitle: crystal structure of methylenetetrahydromethanopterin2 reductase (mer) in complex with coenzyme f420 11 d1ezwa_ 100.0 15 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 12 c2i7gA_ 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:monooxygenase; PDBTitle: crystal structure of monooxygenase from agrobacterium tumefaciens 13 c3c8nB_ 100.0 16 PDB header:oxidoreductase Chain: B: PDB Molecule:probable f420-dependent glucose-6-phosphate dehydrogenase PDBTitle: crystal structure of apo-fgd1 from mycobacterium tuberculosis 14 d1f07a_ 100.0 17 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 15 d1rhca_ 100.0 19 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:F420 dependent oxidoreductases 16 c2b81D_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:luciferase-like monooxygenase; PDBTitle: crystal structure of the luciferase-like monooxygenase from bacillus2 cereus 17 d1nfpa_ 99.9 14 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 18 d1fvpa_ 99.5 14 Fold:TIM beta/alpha-barrel Superfamily:Bacterial luciferase-like Family:Non-fluorescent flavoprotein (luxF, FP390) 19 c1zlpA_ 83.4 8 PDB header:lyase Chain: A: PDB Molecule:petal death protein; PDBTitle: petal death protein psr132 with cysteine-linked glutaraldehyde forming2 a thiohemiacetal adduct 20 c3b8iF_ 82.5 19 PDB header:lyase Chain: F: PDB Molecule:pa4872 oxaloacetate decarboxylase; PDBTitle: crystal structure of oxaloacetate decarboxylase from pseudomonas2 aeruginosa (pa4872) in complex with oxalate and mg2+. 21 c3fa4D_ not modelled 82.1 11 PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form 22 c3eooL_ not modelled 81.9 14 PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei 23 c2ze3A_ not modelled 81.1 19 PDB header:isomerase Chain: A: PDB Molecule:dfa0005; PDBTitle: crystal structure of dfa0005 complexed with alpha-ketoglutarate: a2 novel member of the icl/pepm superfamily from alkali-tolerant3 deinococcus ficus 24 c3lyeA_ not modelled 81.1 16 PDB header:hydrolase Chain: A: PDB Molecule:oxaloacetate acetyl hydrolase; PDBTitle: crystal structure of oxaloacetate acetylhydrolase 25 d1ujqa_ not modelled 80.7 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 26 d1muma_ not modelled 80.3 14 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 27 c2qiwA_ not modelled 79.4 11 PDB header:transferase Chain: A: PDB Molecule:pep phosphonomutase; PDBTitle: crystal structure of a putative phosphoenolpyruvate phosphonomutase2 (ncgl1015, cgl1060) from corynebacterium glutamicum atcc 13032 at3 1.80 a resolution 28 c3qy6A_ not modelled 78.3 8 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase ywqe; PDBTitle: crystal structures of ywqe from bacillus subtilis and cpsb from2 streptococcus pneumoniae, unique metal-dependent tyrosine3 phosphatases 29 c3ih1A_ not modelled 77.7 8 PDB header:lyase Chain: A: PDB Molecule:methylisocitrate lyase; PDBTitle: crystal structure of carboxyvinyl-carboxyphosphonate phosphorylmutase2 from bacillus anthracis 30 c2x7vA_ not modelled 68.2 28 PDB header:hydrolase Chain: A: PDB Molecule:probable endonuclease 4; PDBTitle: crystal structure of thermotoga maritima endonuclease iv in2 the presence of zinc 31 d1s2wa_ not modelled 49.4 19 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate mutase/Isocitrate lyase-like 32 c2wjeA_ not modelled 49.2 16 PDB header:hydrolase Chain: A: PDB Molecule:tyrosine-protein phosphatase cpsb; PDBTitle: crystal structure of the tyrosine phosphatase cps4b from2 steptococcus pneumoniae tigr4. 33 d1hl9a2 not modelled 43.8 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Putative alpha-L-fucosidase, catalytic domain 34 c2hjpA_ not modelled 42.7 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphonopyruvate hydrolase; PDBTitle: crystal structure of phosphonopyruvate hydrolase complex with2 phosphonopyruvate and mg++ 35 c3ez4B_ not modelled 36.8 13 PDB header:transferase Chain: B: PDB Molecule:3-methyl-2-oxobutanoate hydroxymethyltransferase; PDBTitle: crystal structure of 3-methyl-2-oxobutanoate2 hydroxymethyltransferase from burkholderia pseudomallei 36 d1jpdx1 not modelled 35.1 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 37 c3kwsB_ not modelled 34.2 9 PDB header:isomerase Chain: B: PDB Molecule:putative sugar isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_001305149.1) from2 parabacteroides distasonis atcc 8503 at 1.68 a resolution 38 d1r3sa_ not modelled 29.6 13 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 39 c1jpkA_ not modelled 28.6 13 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: gly156asp mutant of human urod, human uroporphyrinogen iii2 decarboxylase 40 d2noca1 not modelled 26.5 29 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 41 c1gshA_ not modelled 26.3 16 PDB header:glutathione biosynthesis ligase Chain: A: PDB Molecule:glutathione biosynthetic ligase; PDBTitle: structure of escherichia coli glutathione synthetase at ph 7.5 42 d2d69a1 not modelled 26.2 16 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 43 c3e02A_ not modelled 26.2 25 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein duf849; PDBTitle: crystal structure of a duf849 family protein (bxe_c0271) from2 burkholderia xenovorans lb400 at 1.90 a resolution 44 c2hk1D_ not modelled 25.8 22 PDB header:isomerase Chain: D: PDB Molecule:d-psicose 3-epimerase; PDBTitle: crystal structure of d-psicose 3-epimerase (dpease) in the presence of2 d-fructose 45 d1xp3a1 not modelled 25.3 23 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Endonuclease IV 46 c2r8wB_ not modelled 24.8 17 PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 47 d1j93a_ not modelled 24.7 19 Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Uroporphyrinogen decarboxylase, UROD 48 c3gzaB_ not modelled 24.0 20 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution 49 c3bh1A_ not modelled 22.4 32 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0371 protein dip2346; PDBTitle: crystal structure of protein dip2346 from corynebacterium diphtheriae 50 d1xkya1 not modelled 21.9 11 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 51 c1hl8B_ not modelled 21.7 26 PDB header:hydrolase Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase 52 c3bi8A_ not modelled 20.8 17 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum 53 c2wvsD_ not modelled 20.6 19 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 54 c3pueA_ not modelled 20.0 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 55 c3e38A_ not modelled 19.4 16 PDB header:hydrolase Chain: A: PDB Molecule:two-domain protein containing predicted php-like metal- PDBTitle: crystal structure of a two-domain protein containing predicted php-2 like metal-dependent phosphoesterase (bvu_3505) from bacteroides3 vulgatus atcc 8482 at 2.20 a resolution 56 c2nuxB_ not modelled 18.1 8 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 57 d2a6na1 not modelled 17.1 7 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 58 c1m7xC_ not modelled 16.8 27 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 59 c3lerA_ not modelled 16.1 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168 60 c3k1dA_ not modelled 16.0 31 PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv 61 d1oyaa_ not modelled 15.2 4 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 62 c2r94B_ not modelled 15.1 16 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase; PDBTitle: crystal structure of kd(p)ga from t.tenax 63 d1gxha_ not modelled 15.0 27 Fold:Acyl carrier protein-like Superfamily:Colicin E immunity proteins Family:Colicin E immunity proteins 64 d8ruca1 not modelled 14.0 10 Fold:TIM beta/alpha-barrel Superfamily:RuBisCo, C-terminal domain Family:RuBisCo, large subunit, C-terminal domain 65 c2ejaB_ not modelled 13.9 10 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 aquifex aeolicus 66 d1z41a1 not modelled 13.5 21 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 67 c3gg2B_ not modelled 13.4 9 PDB header:oxidoreductase Chain: B: PDB Molecule:sugar dehydrogenase, udp-glucose/gdp-mannose PDBTitle: crystal structure of udp-glucose 6-dehydrogenase from2 porphyromonas gingivalis bound to product udp-glucuronate 68 c2hmcA_ not modelled 13.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens 69 d1m6ya2 not modelled 13.2 11 Fold:S-adenosyl-L-methionine-dependent methyltransferases Superfamily:S-adenosyl-L-methionine-dependent methyltransferases Family:MraW-like putative methyltransferases 70 c3dcpB_ not modelled 12.9 24 PDB header:hydrolase Chain: B: PDB Molecule:histidinol-phosphatase; PDBTitle: crystal structure of the putative histidinol phosphatase2 hisk from listeria monocytogenes. northeast structural3 genomics consortium target lmr141. 71 c2infB_ not modelled 12.8 10 PDB header:lyase Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis 72 c3na8A_ not modelled 12.4 16 PDB header:lyase Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase; PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa 73 c1rcxH_ not modelled 12.0 10 PDB header:lyase (carbon-carbon) Chain: H: PDB Molecule:ribulose bisphosphate carboxylase/oxygenase; PDBTitle: non-activated spinach rubisco in complex with its substrate2 ribulose-1,5-bisphosphate 74 d1mzha_ not modelled 12.0 6 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 75 c2vwtA_ not modelled 11.8 12 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex 76 d1vcva1 not modelled 11.6 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 77 c1bf2A_ not modelled 11.3 16 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 78 d1vyra_ not modelled 11.2 14 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 79 c3c6cA_ not modelled 11.1 20 PDB header:hydrolase Chain: A: PDB Molecule:3-keto-5-aminohexanoate cleavage enzyme; PDBTitle: crystal structure of a putative 3-keto-5-aminohexanoate cleavage2 enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 a3 resolution 80 d1jpma1 not modelled 11.0 21 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 81 d1m3ua_ not modelled 10.8 17 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Ketopantoate hydroxymethyltransferase PanB 82 c2l69A_ not modelled 10.7 12 PDB header:de novo protein Chain: A: PDB Molecule:rossmann 2x3 fold protein; PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28 83 c2gq8A_ not modelled 10.6 12 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase, fmn-binding; PDBTitle: structure of sye1, an oye homologue from s. ondeidensis, in complex2 with p-hydroxyacetophenone 84 d2jnaa1 not modelled 10.4 20 Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like 85 d1w3ia_ not modelled 10.2 4 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 86 d1gsaa1 not modelled 10.1 12 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 87 d1q45a_ not modelled 9.9 16 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 88 c2uwqA_ not modelled 9.8 5 PDB header:apoptosis Chain: A: PDB Molecule:apoptosis-stimulating of p53 protein 2; PDBTitle: solution structure of aspp2 n-terminus 89 c3eypB_ not modelled 9.8 12 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative alpha-l-fucosidase; PDBTitle: crystal structure of putative alpha-l-fucosidase from bacteroides2 thetaiotaomicron 90 d1m53a2 not modelled 9.7 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 91 d1vjia_ not modelled 9.7 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 92 c3l5aA_ not modelled 9.7 14 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh/flavin oxidoreductase/nadh oxidase; PDBTitle: crystal structure of a probable nadh-dependent flavin oxidoreductase2 from staphylococcus aureus 93 c3gkaB_ not modelled 9.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:n-ethylmaleimide reductase; PDBTitle: crystal structure of n-ethylmaleimidine reductase from2 burkholderia pseudomallei 94 c1jd7A_ not modelled 9.4 15 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 95 d1vhxa_ not modelled 9.4 15 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 96 d1gwja_ not modelled 9.3 20 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 97 c3cqkB_ not modelled 9.2 23 PDB header:isomerase Chain: B: PDB Molecule:l-ribulose-5-phosphate 3-epimerase ulae; PDBTitle: crystal structure of l-xylulose-5-phosphate 3-epimerase ulae (form b)2 complex with zn2+ and sulfate 98 d1icpa_ not modelled 9.1 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 99 c3gr7A_ not modelled 9.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dehydrogenase; PDBTitle: structure of oye from geobacillus kaustophilus, hexagonal2 crystal form

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0