330 c3snhA_ Probab=97.99   E-value=0.00054  Score=41.54  Aligned_columns=226  Identities=15%

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEECCCCCCCCCHHHH
Q ss_conf             39999748989988999999998872388608986067675113322332102588882198569980786424641478
Q batch____        55 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQR  134 (331)
Q Consensus        55 ~~Vai~G~pnaGKSTLln~L~~~~~~~g~~vaiv~~dp~tt~~~~~~~~~r~~~~~~~~~~~~~i~~~~t~g~~~~~~~~  134 (331)
                      |.|+++|--.+||||++.+|+      |.+....  .-+|.+..         .-.+...+.....+.-.+|........
T Consensus        27 PqiVVvG~QSsGKSSvlEai~------g~~flpr--g~~TR~p~---------~i~l~~~~~~~~~~~~~~~~~~~d~~~   89 (652)
T c3snhA_          27 PQIAVVGGQSAGKSSVLENFV------GRDFLPR--GSGTRRPL---------VLQLVNATTEYAEFLHCKGKKFTDFEE   89 (652)
T ss_dssp             CEEEEEECTTCCHHHHHHHHH------TSCCSCS--SCCCCSCE---------EEEEEECSSCEEECTTTCSCCBCCHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH------CCCCCCC--CCCCCCCE---------EEEEEECCCCCEEEEECCCCCCCCHHH
T ss_conf             818998889887999988761------8742779--99712648---------999985798607898638754289899


Q ss_pred             HHHHHHHHHHCCC------------------EEEEECCCCCHHH---------HHHHHHHCCEEEEECCCCCCHHHHHHH
Q ss_conf             9999999862598------------------0999715332156---------888765188568722577655777655
Q batch____       135 ARELMLLCEAAGY------------------DVVIVETVGVGQS---------ETEVARMVDCFISLQIAGGGDDLQGIK  187 (331)
Q Consensus       135 ~~~~~~~~~~~~~------------------d~~iid~~g~~~~---------~~~~~~~~d~~~~v~~~~~~~~~~~~~  187 (331)
                      +...+...-....                  ++.+||.+|..+.         ....+...+.+++.+.+...|-.....
T Consensus        90 i~~~i~~~~~~~~~~~s~~~i~l~i~~p~~~~LtlvDLPGl~~~~~~~~i~~lv~~yi~~~~~IILaV~~a~~D~ans~~  169 (652)
T c3snhA_          90 VRLEIEAETDRVTKGISPVPINLRVYSPHVLNLTLVDLPGMTKPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA  169 (652)
T ss_dssp             HHHHHHHHHHHTCCCCCSCCCCCEEEESSSCSEEEEECCCCCCCHHHHHHHHHHHHHHHSTTEEEEEEEETTSCSTTCHH
T ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHH
T ss_conf             99999999876414778672799995089764178767898757847899999999826988199999627898766589


Q ss_pred             HHHC------CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             5320------6983999726467895456889999999974321220168982798721478898999999999995301
Q batch____       188 KGLM------EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT  261 (331)
Q Consensus       188 ~~~~------~~~~ivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vv~iSA~~g~Gi~eL~~~i~~~~~~~~  261 (331)
                      ..+.      +...|-|+||.|+++....      ....+.........+..-|..-|...-..-..+.+....-..+-.
T Consensus       170 l~lar~~Dp~g~RTiGVlTK~Dl~~~g~~------~~~il~g~~~~L~lGy~~v~nr~~~~~~~~~s~~e~~~~E~~fF~  243 (652)
T c3snhA_         170 LKVAKEVDPQGQRTIGVITKLDLMDEGTD------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFL  243 (652)
T ss_dssp             HHHHHHHCSSSSSCCCEEECSTTSCTTCC------CHHHHTTCSSCCSSCCEEECCCCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEECCCCCCCCCHH------HHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999719788815998415012766012------899963998645577078876996883215998999999999861


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             352078889999999999999999999962376526889999999980
Q batch____       262 ASGRLQQVRQQQSVEWLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKN  309 (331)
Q Consensus       262 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  309 (331)
                      .++.......+--...+...+...+.+...      ..++.+...+..
T Consensus       244 ~~~~~~~~~~r~Gi~~L~~~L~~lL~~~i~------~~lP~i~~~i~~  285 (652)
T c3snhA_         244 SHPSYRHLADRMGTPYLQKVLNQQLTNHIR------DTLPGLRNKLQS  285 (652)
T ss_dssp             TCHHHHTTTTTSSHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
T ss_conf             699865553203979999999999999999------871789999999