88 c1ni3A_ Probab=99.58   E-value=2.6e-15  Score=107.69  Aligned_columns=166  Identities=22%

Q ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCC----------
Q ss_conf             7532288739999748989988999999998872388608986067675113322332102588882198----------
Q batch____        47 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA----------  116 (331)
Q Consensus        47 ~~~~~~~~~~Vai~G~pnaGKSTLln~L~~~~~~~g~~vaiv~~dp~tt~~~~~~~~~r~~~~~~~~~~~----------  116 (331)
                      ...+.+..+.|||+|.||||||||+|+|+      |.+++.+++.|+||+++         .......++          
T Consensus         3 ~~~r~~~~~kigIVG~PNvGKSTLfNaLT------~~~~a~v~n~pftTi~p---------~~G~v~v~d~r~~~l~~~~   67 (378)
T c1ni3A_           3 QWGRPGNNLKTGIVGXPNVGKSTFFRAIT------KSVLGNPANYPYATIDP---------EEAKVAVPDERFDWLCEAY   67 (378)
T ss_dssp             CCSSSSSCCEEEEEECSSSSHHHHHHHHH------HSTTTSTTCCSSCCCCT---------TEEEEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEEECCCCCHHHHHHHHH------CCCCHHCCCCCCCCCCC---------EEEEEEECCCCCCCCCCCC
T ss_conf             36547887189997089879999999995------88800026899873053---------2599995764432100024


Q ss_pred             -------EEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             -------5699807864246414789999999862598099971533215688876518856872257765577765553
Q batch____       117 -------AFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKG  189 (331)
Q Consensus       117 -------~~i~~~~t~g~~~~~~~~~~~~~~~~~~~~~d~~iid~~g~~~~~~~~~~~~d~~~~v~~~~~~~~~~~~~~~  189 (331)
                             .++..+|+||+..+...                    ..|.+......+..+|.++.+++.......      
T Consensus        68 ~~~~~~~~~i~liD~pGL~~ga~~--------------------g~glgn~fL~~ir~aD~il~VVda~~~~~~------  121 (378)
T c1ni3A_          68 KPKSRVPAFLTVFDIAGLTKGAST--------------------GVGLGNAFLSHVRAVDAIYQVVRAFDDAEI------  121 (378)
T ss_dssp             CCSEEECEEEEEECTGGGCCCCCS--------------------SSSSCHHHHHHHTTCSEEEEEEECCCTTCS------
T ss_pred             CCCCCCEEEEEEEECCCCCCCCCC--------------------CHHHHHHHHHHHHHCCEEEEEEECCCCCCC------
T ss_conf             656632047999964674457643--------------------105899999999757989999727787432------


Q ss_pred             HCCCCEEEEEECCCCCCHHH---HHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             20698399972646789545---68899999999743212201689827987214788989999999999953
Q batch____       190 LMEVADLIVINKDDGDNHTN---VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA  259 (331)
Q Consensus       190 ~~~~~~ivv~NK~D~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~vv~iSA~~g~Gi~eL~~~i~~~~~~  259 (331)
                            ..+.+..|....-.   .......+.-.-............+..++|+.......+|++.+.+++..
T Consensus       122 ------~~~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~kl~k~~~~~~~~~~~~~~~~~~~ll~~i~~~L~e  188 (378)
T c1ni3A_         122 ------IHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLEXKAKKEEQAIIEKVYQYLTE  188 (378)
T ss_dssp             ------SCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ------CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             ------1100357978999999999985187865322899987552155544322210168899999999751