BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (357 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Ta... 567 e-160 UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=... 431 e-119 UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=... 359 7e-98 UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax... 336 7e-91 UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=... 281 3e-74 UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=... 276 8e-73 UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax... 274 3e-72 UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=... 274 4e-72 UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax... 268 2e-70 UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=... 258 3e-67 UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=... 252 2e-65 UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=... 250 7e-65 UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=... 249 1e-64 UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=... 248 3e-64 UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=... 244 4e-63 UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=... 244 4e-63 UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=... 243 6e-63 UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=... 241 3e-62 UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=... 239 8e-62 UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=... 238 2e-61 UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=... 235 2e-60 UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=... 234 3e-60 UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=... 233 9e-60 UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=... 232 1e-59 UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=... 230 6e-59 UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=... 224 3e-57 UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=... 223 6e-57 UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=... 219 9e-56 UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=... 218 3e-55 UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=... 215 2e-54 UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=... 215 2e-54 UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=... 211 3e-53 UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=... 209 1e-52 UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=... 207 5e-52 UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=... 207 7e-52 UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=... 204 3e-51 UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax... 202 1e-50 UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=... 202 2e-50 UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=... 197 5e-49 UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax... 192 2e-47 UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=... 186 1e-45 UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=... 185 2e-45 UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=... 179 1e-43 UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=... 172 2e-41 UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=... 166 1e-39 UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=... 162 1e-38 UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=... 162 2e-38 UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=... 156 1e-36 UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=... 153 9e-36 UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Ta... 152 2e-35 UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=... 148 4e-34 UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=... 147 6e-34 UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=... 146 1e-33 UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=... 144 6e-33 UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=... 144 7e-33 UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax... 140 9e-32 UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax... 139 1e-31 UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=... 139 1e-31 UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=... 138 3e-31 UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=... 138 4e-31 UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=... 137 6e-31 UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=... 137 6e-31 UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=... 137 7e-31 UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=... 136 1e-30 UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=... 136 1e-30 UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=... 136 1e-30 UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=... 135 3e-30 UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax... 134 4e-30 UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=... 133 1e-29 UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=... 132 1e-29 UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax... 132 2e-29 UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9... 132 3e-29 UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax... 131 3e-29 UniRef50_UPI00016B2627 DNA replication and repair protein RecF n... 131 4e-29 UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=... 130 5e-29 UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=... 130 6e-29 UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=... 130 9e-29 UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=... 130 9e-29 UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax... 129 1e-28 UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=... 129 1e-28 UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=... 129 1e-28 UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax... 127 4e-28 UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=... 127 5e-28 UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=... 127 8e-28 UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax... 126 1e-27 UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=... 126 1e-27 UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=... 125 2e-27 UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=... 125 3e-27 UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=... 124 5e-27 UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=... 124 5e-27 UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=... 123 9e-27 UniRef50_UPI00016C0204 DNA replication and repair protein RecF n... 123 1e-26 UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=... 122 2e-26 UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=... 122 2e-26 UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=... 122 2e-26 UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=... 121 4e-26 UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=... 121 4e-26 UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Ta... 121 4e-26 UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=... 120 5e-26 UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleid... 120 9e-26 UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=... 119 1e-25 UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=... 119 1e-25 UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=... 119 1e-25 UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=... 119 1e-25 UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=... 119 2e-25 UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=... 119 2e-25 UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=... 119 2e-25 UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=... 119 2e-25 UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=... 118 3e-25 UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=... 118 3e-25 UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax... 118 4e-25 UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=... 118 4e-25 UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax... 118 4e-25 UniRef50_A5WBC3 DNA replication and repair protein RecF n=1 Tax=... 117 5e-25 UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=... 117 9e-25 UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=... 116 1e-24 UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=... 116 1e-24 UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=... 116 1e-24 UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococ... 115 2e-24 UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=... 115 2e-24 UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=... 115 2e-24 UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=... 115 2e-24 UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=... 115 3e-24 UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR 115 3e-24 UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=... 115 3e-24 UniRef50_P49997 DNA replication and repair protein recF n=1 Tax=... 114 4e-24 UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=... 114 4e-24 UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=... 114 4e-24 UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=... 113 1e-23 UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaeroc... 112 2e-23 UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=... 112 2e-23 UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=... 111 3e-23 UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax... 111 4e-23 UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=... 110 6e-23 UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax... 110 6e-23 UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=... 110 8e-23 UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibact... 110 9e-23 UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=... 110 9e-23 UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=... 109 1e-22 UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=... 109 2e-22 UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=... 109 2e-22 UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=... 108 2e-22 UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=... 108 4e-22 UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=... 107 6e-22 UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=... 107 7e-22 UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=... 106 1e-21 UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=... 106 1e-21 UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=... 106 2e-21 UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=... 105 2e-21 UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=... 105 2e-21 UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=... 105 2e-21 UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=... 105 4e-21 UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=... 104 4e-21 UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=... 104 5e-21 UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=... 104 6e-21 UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=... 103 8e-21 UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=... 103 8e-21 UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=... 103 9e-21 UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerof... 103 1e-20 UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=... 102 2e-20 UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=... 102 2e-20 UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=... 102 2e-20 UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax... 101 3e-20 UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax... 101 4e-20 UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=... 101 4e-20 UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=... 100 7e-20 UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=... 100 7e-20 UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=... 100 9e-20 UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=... 100 9e-20 UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=... 100 1e-19 UniRef50_B0VFV3 Putative putative DNA repair and genetic recombi... 100 1e-19 UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=... 100 1e-19 UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=... 99 2e-19 UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax... 99 3e-19 UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=... 98 5e-19 UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=... 97 6e-19 UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=... 97 7e-19 UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=... 97 1e-18 UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=... 97 1e-18 UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=... 97 1e-18 UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=... 96 1e-18 UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=... 96 2e-18 UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=... 96 2e-18 UniRef50_C9RJE3 DNA replication and repair protein recF n=1 Tax=... 96 2e-18 UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=... 96 3e-18 UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=... 96 3e-18 UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=... 95 3e-18 UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=... 95 3e-18 UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=... 95 5e-18 UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax... 94 6e-18 UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=... 94 6e-18 UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomi... 94 1e-17 UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax... 94 1e-17 UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax... 93 1e-17 UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=... 93 1e-17 UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=... 92 2e-17 UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=... 92 2e-17 UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=... 92 2e-17 UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=... 92 3e-17 UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=... 92 3e-17 UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=... 92 4e-17 UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=... 91 5e-17 UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=... 91 6e-17 UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=... 91 7e-17 UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=... 88 4e-16 UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=... 87 7e-16 UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax... 87 9e-16 UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=... 87 1e-15 UniRef50_UPI0001C311AF DNA replication and repair protein RecF n... 87 1e-15 UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=... 87 1e-15 UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=... 86 2e-15 UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=... 86 2e-15 UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=... 86 2e-15 UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=... 86 2e-15 UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=... 86 2e-15 UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=... 86 3e-15 UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=... 85 3e-15 UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=... 85 5e-15 UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 84 5e-15 UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=... 84 9e-15 UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=... 84 1e-14 UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=... 83 1e-14 UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax... 82 2e-14 UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax... 82 3e-14 UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia... 82 3e-14 UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=... 80 9e-14 UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=... 80 1e-13 UniRef50_D1R4I7 Putative uncharacterized protein n=1 Tax=Parachl... 80 2e-13 UniRef50_C0VSL8 Recombination protein F n=1 Tax=Corynebacterium ... 80 2e-13 UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=... 79 2e-13 UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=... 79 3e-13 UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=... 79 3e-13 UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=... 77 1e-12 UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=... 77 1e-12 UniRef50_A8LB19 DNA replication and repair protein recF n=1 Tax=... 76 2e-12 UniRef50_Q1JZF1 Recombinational DNA repair ATPase (RecF pathway)... 75 4e-12 UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=... 74 6e-12 UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=... 74 7e-12 UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=... 74 9e-12 UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=... 73 1e-11 UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax... 73 1e-11 UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=... 72 2e-11 UniRef50_Q3DSK5 DNA replication and repair protein recF (Fragmen... 72 3e-11 UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax... 72 3e-11 UniRef50_UPI0001BC5A53 RECF protein n=1 Tax=Fusobacterium sp. D1... 70 1e-10 UniRef50_C6QHM0 DNA replication and repair protein recF n=1 Tax=... 70 1e-10 UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=... 69 3e-10 UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=... 69 3e-10 UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=... 68 4e-10 UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax... 67 7e-10 >UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Tax=Gammaproteobacteria RepID=RECF_SODGM Length = 364 Score = 567 bits (1460), Expect = e-160, Method: Compositional matrix adjust. Identities = 275/359 (76%), Positives = 313/359 (87%), Gaps = 3/359 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+RL+IRDFRNI ADL+L+ FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ GRV Sbjct: 1 MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60 Query: 61 IRHEQEAFVLHGRLQG---EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 IRHEQ FVLHGR++ + R T++GL++++ GDS VRIDG+DGHKVAELA L+PMQLI Sbjct: 61 IRHEQPEFVLHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLI 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TPEGFTLLNGGPKYRRAF+DWGCFHNEP FFTAWSNL+RLLKQRNAALRQV+RY+QLR W Sbjct: 121 TPEGFTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQVSRYQQLRVW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+ELIPLA +IS WRA+YSA IAAD+ TC QFLPEF L FSFQRGW+KE+++ E+LER Sbjct: 181 DQELIPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESDFGELLERQ 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERDR LTYTA GPHKAD RIRA+G PVED LSRGQLKLLMCALRLAQGEFLT +GRRC Sbjct: 241 FERDRALTYTASGPHKADFRIRAEGVPVEDILSRGQLKLLMCALRLAQGEFLTHRNGRRC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LYLIDDFASELD RR LLA RLKAT +QVFVSA+SA+ + D+ DE KMF VE+GKI+ Sbjct: 301 LYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKMFKVEQGKIS 359 >UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_ACTSZ Length = 358 Score = 431 bits (1108), Expect = e-119, Method: Compositional matrix adjust. Identities = 199/357 (55%), Positives = 263/357 (73%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+++RL+I +FRN+ DL GFNFLVG NGSGKTS+LE+I+ LGHGR+F+S R+ Sbjct: 1 MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD-KQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +++ F LHGR+ ++ E ++GL K K+G + V+I+G DG+K+++LAHL+PMQ+ITP Sbjct: 61 ITYDKPYFTLHGRIWEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQMITP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 EG TLLNGGP YRRAFLDWG FH+ P F +AWS L RLLKQRNAAL+Q Y L+ WD Sbjct: 121 EGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTYDYTDLQVWDV 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 EL LA Q+S WR +Y+ + ++ TC+ FLPE + SF +GW+K T+Y ++L NF Sbjct: 181 ELSKLAHQVSLWRTDYAEALRPEIEQTCRLFLPELDIQVSFHQGWDKNTDYGDLLRENFA 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+ + YT GP KAD R +A+G PVED LSRGQLKLLMCALRLAQGE L + R C++ Sbjct: 241 RDKHIGYTVSGPQKADFRFKANGFPVEDVLSRGQLKLLMCALRLAQGEHLMVQKNRSCIF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDFASELD+ +RGLLA RL+ + SQVFV+AI+AE + M EN + F+V G I+ Sbjct: 301 LIDDFASELDETKRGLLAERLRQSHSQVFVTAITAEQLKQMQPENHRTFSVNNGMIS 357 >UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_PSYIN Length = 359 Score = 359 bits (922), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 174/357 (48%), Positives = 240/357 (67%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL+I FRNI +A L +P N +VG NGSGKT++LEAIY LG GR+FR+ RV Sbjct: 1 MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE ++F L +Q IGL K K G++ ++I+G+ K+A L +P+QLITPE Sbjct: 61 VEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 G+TLL+G PK RRAFLDWG F+++P F+ WS +KRLLKQRNAAL+Q Y +L+ WD E Sbjct: 121 GYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE-YAEVLERNFE 239 L L+E+IS R Y + + T FLP+FS+T F GW+K + + L NF Sbjct: 181 LCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT+ GP KADLR + +G PV D LSRGQLKL + ALRLAQG FL ++C++ Sbjct: 241 RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDF+SELD ++ +LA + + +Q+F+S I+AE++ + + +F VE GKIT Sbjct: 301 LIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKIT 357 >UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax=Shewanella RepID=RECF_SHEHH Length = 365 Score = 336 bits (862), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 165/357 (46%), Positives = 234/357 (65%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSLTRL I FRNI A L G N + G NGSGKTS+LEAIY LG GR+FRS RV Sbjct: 1 MSLTRLHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H + L L E+E+ IGL + + G+++V+I+G + +++ LA +P+Q+ITPE Sbjct: 61 IQHNDDKLTLFANLSVCEQESKIGLRRFRNGETEVKINGDNIKRLSTLAETLPIQVITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F+LL GPK RR F+DWG FH++ F AW+N++R+LKQRN L+ Y Q++ WDKE Sbjct: 121 SFSLLFEGPKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKNQVSYSQIQYWDKE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L+ +EQ++ R +Y + + +FLP + SF RGW+ +T++ ++LE + R Sbjct: 181 LVRYSEQVTEIRKQYVDSLNEQLKGIIGEFLPLVEVKVSFTRGWDSKTDFGQLLETQYLR 240 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D T GPHKADLR+R PV+D LSRGQLKLL+CALR+AQG+ L +++ + +YL Sbjct: 241 DVAAGNTGSGPHKADLRLRVGVLPVQDALSRGQLKLLVCALRIAQGKLLKQQTDKNSIYL 300 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID-MSDENSKMFTVEKGKIT 356 +DD SELD + R LL +L T +QVFV+AI ++D ++ SKMF VE+G +T Sbjct: 301 VDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSLATPPSKMFHVEQGCVT 357 >UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=Cellvibrio japonicus Ueda107 RepID=RECF_CELJU Length = 365 Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/363 (39%), Positives = 224/363 (61%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL RL + RN+E+ D+ S N + G NGSGKTS+LEAI L GR+FRS + + Sbjct: 1 MSLARLRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPL 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H+Q AF + GR+ ++ E IG+ +++QG+ ++ +G + +A+LA +P+Q+I Sbjct: 61 ISHQQLAFTIFGRVLADDAAEIPIGIQRNQQGEVMLKANGANVGSIADLAIFLPVQVINS 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--VTRYEQLRPW 177 + F LL G PK RR F+DW FH E F+ W +L+R LK RN+ LR+ + +E L W Sbjct: 121 DTFLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFE-LSTW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+EL+ L EQI +R + A ++F+ L +QRGW+K +YA+VL+ + Sbjct: 180 DQELVQLTEQIHCFREQCMALFVPVFEQLLQEFVVLEGLELHYQRGWDKHKDYAQVLQDS 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD++L T G H+A+LRI +G + LSRGQ KLL+CAL++AQG ++ +GR+C Sbjct: 240 FERDKRLGVTHAGSHRAELRITLNGQDAAEILSRGQQKLLVCALKIAQGLVFSQVTGRKC 299 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV----IDMSDENSKMFTVEKG 353 +YL+DD +ELD++ R L L +QVF++ + + + +D + KMF VE G Sbjct: 300 IYLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKPEITPKMFHVEHG 359 Query: 354 KIT 356 +++ Sbjct: 360 RVS 362 >UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=Alteromonadales RepID=RECF_PSEHT Length = 364 Score = 276 bits (706), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 145/361 (40%), Positives = 212/361 (58%), Gaps = 6/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+ L ++ FRNIE L G N + G NGSGKTS+LEAIY L HG++FR+ + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H+QE FV+HGR + IG++K + G++ ++I G K++ELA LMP+Q+ITPE Sbjct: 61 IAHQQEQFVIHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQIITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR--YEQLRPWD 178 ++L GGPK RR FLD G FH E FF W + ++LKQRNA L+ + ++Q++ WD Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQIKFWD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMAD-TCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 KE + LAEQI+ R Y + D C + L SF GW++ ++ LE N Sbjct: 181 KEFVRLAEQINKLRMAYISRFKQQFFDKMCAELTLIRDLEISFNAGWKESESLSDALELN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T+ GPHKAD G+ VE+ SRGQLKLL+ AL++ Q + E+ ++ Sbjct: 241 FERDARQGFTSKGPHKADFSFSVAGSSVENIFSRGQLKLLLYALKVTQNSLIESETDKQS 300 Query: 298 LYLIDDFASELDD---ERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + LIDD SEL + E+ G L + + + + S V++ +MF V+ G Sbjct: 301 ILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPMQRELQMFHVKHGN 360 Query: 355 I 355 + Sbjct: 361 L 361 >UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax=Gammaproteobacteria RepID=RECF_PSEU5 Length = 370 Score = 274 bits (701), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 146/360 (40%), Positives = 214/360 (59%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL + RN+ L+ SP N L G NGSGKTS+LEAI+ LG R+FRS+++ V Sbjct: 1 MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +EQ A + G+++ ++ A+G+++D+ G+ ++RIDG AELA +P+QLI P Sbjct: 61 ITYEQPACTVFGQVELPDQHSRALGVSRDRSGEVRIRIDGQSVRSAAELADTLPLQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWD 178 + F LL G PK RR FLDWG FH E F +AW L++ L+QRN+ LR T W Sbjct: 121 DSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSASDAAWS 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +EL +++I +R Y + T K L LT S+ RGW+K+ +VL + Sbjct: 181 RELSLASDEIDGYRRAYIQALKPVFETTLKALLDLDGLTLSYYRGWDKDRPLVDVLASSL 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR + +T GP +ADLR++ + LSRGQ KL++CALR+AQG ++ +C+ Sbjct: 241 ERDRAMGHTQSGPQRADLRLKVGSHNAAEVLSRGQQKLVVCALRIAQGHLVSEAKRGQCI 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS--KMFTVEKGKIT 356 YL+DD SELD + R L L+ QVF++ + + + + E + MF VE G+IT Sbjct: 301 YLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGEQTPVSMFHVEHGQIT 360 >UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=Rickettsiella grylli RepID=A8PQC0_9COXI Length = 363 Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL FRN+ DL SP FNF+ G NGSGK+S+LEAIY L GR+FRS R Sbjct: 1 MHLFRLKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRA 60 Query: 61 IRHEQEAFVLHGRLQGEERET--AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+++ E F L L G T IGL K +QG +K++ID + + V+ELA L+P+Q I Sbjct: 61 IQYDAERFNLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDN-NTNPVSELAKLLPLQFIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P + LL+GGP+ RR F+DWG FH EP FF W + +LKQRNAAL++ + Q++ WD Sbjct: 120 PNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQRQVPWNQIKIWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 LI A++I+++R Y + + + + + L F +GW+K+ A +L + Sbjct: 180 LALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLNLASILSGSL 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GPH+ADL + +G V + LSRG+ KLL+CAL+LAQG L + + + C+ Sbjct: 240 ERDYKLLYTQFGPHRADLLLSLNGISVHEILSRGEQKLLICALQLAQGLLLKKIAQKSCI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN-SKMFTVEKGKITD 357 YL DD SELD ++ L L ++QVF++ I + + K+F V+ G++ + Sbjct: 300 YLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSVETHRLGKIFHVDDGQVIE 359 >UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax=Francisella RepID=RECF_FRATM Length = 349 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 132/352 (37%), Positives = 193/352 (54%), Gaps = 5/352 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L +++FRNI NF+VG NGSGKTS+LE+IY L H R+FRS Q+ R+ Sbjct: 1 MYISNLRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD--SKVRIDGTDGHKVAELAHLMPMQLIT 118 I H + F+++ + + E I L++ K + SK+ ++ H E+ +P+QLI Sbjct: 61 INHNADEFIIYTKAYNPD-EITISLSRKKNSNNISKLNLEIQKNH--TEITRNLPIQLIN 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE F ++N G + R LDWG F+ + F W K L+KQRN+AL+Q Y + D Sbjct: 118 PESFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYPYSYILSID 177 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 K+L AE + R Y + + + F P L + RGW A+VLE +F Sbjct: 178 KKLCEFAEILDYKRQAYFTKLKPKIYEILSHFNPNLQLDIDYFRGWNLHKSLAQVLEESF 237 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 D + T HGPHKAD+ + P++D SRGQ KLL+CAL+LAQGE E+ +C+ Sbjct: 238 NYDNKYKVTNHGPHKADIVLSVSHKPIQDIFSRGQQKLLICALKLAQGEIHNSENDNKCI 297 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 YLIDD SELD L + LK +SQVF++ + + D NS + + Sbjct: 298 YLIDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYILEI 349 >UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=Alteromonadales RepID=RECF_PSEA6 Length = 363 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 137/360 (38%), Positives = 208/360 (57%), Gaps = 6/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + IR+ RN++ S G NF++G NGSGK+S+LEAI+ LG GR+FR+ + V Sbjct: 1 MKLDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++EQE+F + + +GL++ V I+G G+KV++L L+P+Q+ TP+ Sbjct: 61 IQNEQESFTVFCECLEDSTTQRLGLSRSINDTVSVSINGIKGNKVSDLVSLLPVQIFTPQ 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRY--EQLRPW 177 +L G PK RR ++DW FH E F T + RLLK NA R Q Y Q W Sbjct: 121 SSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQRVYW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 L +++ +R + + QFLPEF + S+ RGWEK E E L ++ Sbjct: 181 TDLLAQYGSELTEFRNAMMTRLIPLITSNLAQFLPEFCVEISYYRGWEKGLELNEALTKS 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + Y + GPHKAD+R + G P ++ LSRGQL++L+ AL+LA + L + + C Sbjct: 241 ADRDYKNGYISVGPHKADVRFKISGKPAQEVLSRGQLRMLVAALQLATTQCLMSYTQKTC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 ++L+DD +ELD +R + RL + +Q+FV+AI EH ++ D +N KMF VE G++ Sbjct: 301 IFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAIE-EHQLEFIDKYQNKKMFHVEHGQV 359 >UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=Idiomarina RepID=RECF_IDILO Length = 354 Score = 252 bits (643), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 132/358 (36%), Positives = 210/358 (58%), Gaps = 5/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN L+ SP N + G NGSGKTS+LEAIY LG GR+FR ++ Sbjct: 1 MFIETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ F + R Q + AIG+ + G+ +R++G + +++++A L+P+QL+TPE Sbjct: 61 IKEGNSGFTVFCRSQ----DYAIGVRRSTDGEQSLRLNGANVQRMSDVARLVPVQLLTPE 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L GP RR F+DWG FH E F++ W +LLKQRN+ L+Q + + R W + Sbjct: 117 SVDILLEGPGQRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDRYWKE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L E+IS R +Y + + + K FL + ++ + GW+ + LE + E Sbjct: 177 QLAYYGERISKSREKYLEELNDYIQELAKSFLSDVTMEVRLKSGWDTSQSLFDALESHTE 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D++ +T+ G HKAD+++ ADG V+ LSRGQLK + AL+LAQG+ + + C+Y Sbjct: 237 KDKKYGFTSVGAHKADIKVIADGVEVKHRLSRGQLKTAITALKLAQGKHYQKIKRQPCIY 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 L+DD SELD + + LL L+ +QVF++AI+ + + D ++ +MF VE G I + Sbjct: 297 LVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSDKFQKSPRMFHVEHGVINE 354 >UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=Reinekea blandensis MED297 RepID=A4BD84_9GAMM Length = 364 Score = 250 bits (638), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 136/359 (37%), Positives = 204/359 (56%), Gaps = 8/359 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L + RN+ +A L LSPG N G NG+GKTSVLEAI+ L R+F+ + V Sbjct: 1 MAVLTLSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE E ++ G L R +G+ + ++G ++R++G +A+L HLMP+QLI + Sbjct: 61 VSHELEELLVTGELGDGSR---LGVRRTQKGQVQIRLNGESLASLAQLVHLMPVQLIHSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPWD 178 F LL G P RR FLDWG FH F W L++ LK RN+ LR ++ R QL W+ Sbjct: 118 SFALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIER-SQLAVWE 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +E I AE+I +R +Y G D Q + L + RGW+++ EVLE+ Sbjct: 177 REYIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWDRQKPLNEVLEQQR 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 +RD +L YT GP +AD+RI+ + D LSRGQ KL++CAL++AQ +L R+ + + Sbjct: 237 DRDMKLGYTQSGPQRADMRIKVNKVNAADELSRGQQKLVVCALKIAQSLYLQRQQNQPTV 296 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM--SDENSKMFTVEKGKI 355 +LIDD +ELD L + ++ QSQVF++ + + + +MF VE G+I Sbjct: 297 FLIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKTFWKHPDQVRMFHVEHGEI 355 >UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=Bermanella marisrubri RepID=Q1MXH8_9GAMM Length = 357 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 132/359 (36%), Positives = 206/359 (57%), Gaps = 7/359 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L+++ RN+ +++ SP N + G NGSGKTS LEAIY L + ++FR+ + + Sbjct: 1 MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H Q +L ++ +G+ ++++G +++++G + AELA ++P+QL+ P Sbjct: 61 IQHGQNTMTGFCQLPHKQ----LGVERNQEGQRRIKLNGVCLNSAAELASVLPIQLLDPT 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP-WDK 179 F LL G P+ RR ++DWG FH EP FF W KR + RNA LR E R W Sbjct: 117 MFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERKIWHS 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L LA QI++ R Y + + +T SF +GW+K+ +Y E+LE +++ Sbjct: 177 SLSDLANQITSMRIAYLERLKPLFDHYMARLNDGLGVTMSFYQGWKKDQDYYELLESSWK 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + YT GP +ADLRI+A+ P D LSRGQ K+++CAL+LAQ + + SG C++ Sbjct: 237 SDIESGYTKSGPQRADLRIKAENVPAMDVLSRGQQKMVVCALKLAQADLYKQVSGSPCIF 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS--KMFTVEKGKIT 356 L+DD A+ELD R L L+ + QVFV+A+ + + +S K F VE G I Sbjct: 297 LVDDLAAELDINHRKALCRLLEELKCQVFVTAVESTQIQGCWSPSSQLKTFHVEHGTIN 355 >UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQF9_9GAMM Length = 363 Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/335 (37%), Positives = 195/335 (58%), Gaps = 4/335 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS++ L I++ RNI + A S N + G NGSGKTS+LEAI LG R+FR+ + + Sbjct: 1 MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60 Query: 61 IRHEQEAFVLHGRL--QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 ++ EQ + V+ + + + ++G+ + +G++++R +G D ++ LA L+P+Q+I Sbjct: 61 VQTEQASTVVFASIDPMAQGFKQSLGVERPVEGEARIRFEGGD-IDLSTLAELIPLQVIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP-W 177 + F LL G P RR FLDWG FH + F W +R+LKQRN L+ QLR W Sbjct: 120 SDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLKCGKIDNQLRQVW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+E I ++Q++ R EY + + Q L + + F GW+K+ + EVL N Sbjct: 180 DREFIAFSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFSYGWDKKRQLDEVLASN 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T GP +AD++++ DG + LSRGQ KL++ AL+LAQG R +GR C Sbjct: 240 FERDLRQGFTGSGPQRADIKLKVDGHNAAERLSRGQKKLVVSALKLAQGALFQRMNGRPC 299 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 +YLIDD SELD L L+ + +Q F++ + Sbjct: 300 IYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCV 334 >UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=Marinomonas RepID=RECF_MARMS Length = 368 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 133/337 (39%), Positives = 189/337 (56%), Gaps = 3/337 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL I RN+ + SP N +VG NGSGKTSVLEAI+ L GR+FRS + Sbjct: 1 MPLVRLDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTY 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+HE +A ++ +L Q + +GL + + G VRI G V ELA +P+QLI P Sbjct: 61 IQHENDACIVFAQLHQKQGSPIRVGLQRHRDGQIDVRIQGQRAQSVIELAERLPVQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWD 178 + F LL G P RR F+DWG FH + F AW ++ LKQRN LR+ L +D Sbjct: 121 DAFRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLAAFD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +ELI L EQ++ R Y + E S++ F +GW+ + A +E Sbjct: 181 QELIRLGEQVNQSRKAYVEKLTPHFVKVLSLLTTELSVSLQFFQGWDAQKNLAMAVEAGR 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GP +ADLR++ DTLSRGQ KL++ AL++AQG+ L + GR + Sbjct: 241 ERDIELGYTHTGPQRADLRVKTATGDALDTLSRGQQKLVVSALKIAQGQLLI-DMGRPLV 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 +L+DD +ELD R L L++ SQ+F++++ + Sbjct: 300 FLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPD 336 >UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT32_9GAMM Length = 357 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 199/356 (55%), Gaps = 4/356 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL +L I++ R + T ++ALSP N + G N SGKTS+LEAI+ L GR+FR+ + Sbjct: 1 MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE + V+ + + IG+ + + + +++ G +V+ELA +P Q+I P+ Sbjct: 61 LSHEAKQAVVAATVHQPDGACRIGVQRSAR-EWLMKVGGERVQRVSELARWLPTQVIHPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDK 179 LL GP YRR FL+WG FH E F+ AW +R LKQRN+ALRQ R + WD Sbjct: 120 SHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQKDARMDG--AWDS 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 EL A I R EY A + + + + + +Q GW+ E A VL E Sbjct: 178 ELSRAASFIHELREEYVADLNRILPRFVAAMMGQQEVQMVYQPGWDSEQTLATVLRDYRE 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +DR +T GPH+ADL + +G + +SRGQ K+L+ ALRLAQ +SG+ CL Sbjct: 238 KDRYRGHTQQGPHRADLSFKVNGYKAQAEISRGQQKMLVSALRLAQAALYQEQSGQSCLI 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 ++DD +ELD++ R L L QSQV V+ + AE + + + K+F VE GK+ Sbjct: 298 MMDDLPAELDEKHRNALMGLLADMQSQVLVTCVEAEQIPLNAWKEYKLFHVEHGKV 353 >UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R5Z5_KANKD Length = 369 Score = 243 bits (621), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 120/360 (33%), Positives = 208/360 (57%), Gaps = 5/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I++FRN++ + L SP N + G N +GKTS+LE+++ LGHGR+FR+ + ++ Sbjct: 1 MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +EQ++F L L + +G+ + + D VR++ K+++L L+P+Q++ PE Sbjct: 61 INYEQDSFTLFSELYSHNVQQRLGVQRFRNNDVNVRLNQEPLAKLSDLVSLIPIQVLAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + LL GP RR LDWG FH E F W +R++ QRN L+ Y+ L WD + Sbjct: 121 HYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLLKGSLSYKDLEAWDSQ 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 LIPL++Q++ +R +Y ++ + QFLP+ L+ F +GW+ + + +L + + Sbjct: 181 LIPLSDQVNQYRQDYCDSLSPYFHEIASQFLPDVQLSLEFYKGWQGK-DLESLLVEQYLK 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D++L YT KADL+I + D LSRGQ KL+ AL+LAQ + ++L Sbjct: 240 DKKLGYTQSTIQKADLKILSGKRLAADYLSRGQQKLVTTALKLAQLRLAQERGQQYPVFL 299 Query: 301 IDDFASELDDERRGLLASRL--KATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKIT 356 +DD +ELD+ + LL + L + + Q+F++ + + + + + N+++F VE G ++ Sbjct: 300 LDDIGAELDENHQKLLLNFLAKQPEKQQIFITCVHLDPLKSLINRYNNARLFHVEHGAVS 359 >UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD56_LEGLO Length = 356 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 196/358 (54%), Gaps = 13/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L I RNI +A L L+P FNF+ G+NGSGKTSVLEA Y L G +FR+ +I + Sbjct: 1 MILTELKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H Q + + R G +ET I + K G ++V+++ ++LA+ +P Q+ + Sbjct: 61 ISHNQPSMTVFAR--GRNQET-ISIQKSYSGATQVKLNNQFCSTTSQLAYALPCQVFYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR LDWG FH + +F W KR+LKQRNA L++ + PWDK+ Sbjct: 118 LFQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYIPWDKQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET---EYAEVLERN 237 L LA Q+ R EY + + L E T + +GW+K+ EVL N Sbjct: 178 LDQLANQLHLLREEYFIQWEREFISVLSE-LSELGCTLKYYKGWDKKNLGKSLEEVLAEN 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ D YT HG H+AD I D V+ +SRGQ K+++ AL+LAQ ++ + C Sbjct: 237 FDSDCHKLYTQHGAHQADFIIEVDNNKVKHFISRGQQKIILIALKLAQANLVSED----C 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI--DMSDENSKMFTVEKG 353 LYL+DD A+ELD+ + + S L Q +++ S +V+ + S+ S + + G Sbjct: 293 LYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVLFENFSNNFSSRYQINAG 350 >UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=Saccharophagus degradans 2-40 RepID=RECF_SACD2 Length = 367 Score = 239 bits (611), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 206/363 (56%), Gaps = 11/363 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L+ L ++ FRN+ D+ SP N + G NGSGKTS+LEAI L H R+FR+ + R+I+ Sbjct: 4 LSNLKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLIQ 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 AF + ++G + +G+ ++ G S ++DG A+LA +P+Q+I F Sbjct: 64 DTTTAFTVFATVEGSD-AFKVGVQREWSGKSTAKLDGLSAKSSAQLATNLPVQIIDAHTF 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDKEL 181 LL GG K RR F DW FH + F TAW+N + +KQRN+ LR Y LRPWD+++ Sbjct: 123 ALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRPWDEQI 182 Query: 182 IPLAEQISTWRAEYSAGIA---ADMADTCKQFLPEFSLTFSFQRGW-EKETEYAEVLERN 237 LA I R E + + CK F LT ++Q GW E E + + LE+ Sbjct: 183 AGLAATIDECRVECITPLIQAFKALMGECK-FADNVDLTLAYQPGWKEGELSFPKQLEQA 241 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F RDR+L YT GPHK+DL+I A+G+P + LSRGQ K ++ AL +A+ + + GR Sbjct: 242 FARDRKLGYTILGPHKSDLKITANGSPAVEVLSRGQQKAVINALHIAEAQVYKTQIGRTP 301 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM----SDENSKMFTVEKG 353 ++L+DD SELD +L+ L +QVFV+ + A + + +E KMF V++G Sbjct: 302 VFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKNEAIKMFHVKQG 361 Query: 354 KIT 356 ++T Sbjct: 362 EVT 364 >UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2M2_9GAMM Length = 373 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 9/361 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 SL+RL I RN+ L N G NGSGKTSVLEAI+ LG R+FR I ++ Sbjct: 6 SLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRG-SIKSLV 64 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H Q+ + G L E R T +G+ + G+ K++I G+ VAEL +P+Q+I + Sbjct: 65 THGQDHCTVFGAL--EPRSTTLGVQRGVTGEVKIKIAGSPVRTVAELVEYLPVQVINADS 122 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPWDKE 180 F LL G P RR +LDWG FH E FF W +R +KQRN LR+V E+L W +E Sbjct: 123 FNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPTEELAVWTRE 182 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 L E +S +R Y + + Q P + L +++GW+K+ EY + LE + Sbjct: 183 LAQSGEVLSGYRESYFNRLTPRFIEIMAQLAPSLTGLELRYRKGWDKQLEYQQALENSTM 242 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + YT GP + D+R+ +G DTLSRGQ KL++C L+LAQG+ + C Y Sbjct: 243 TDIEQGYTHVGPQRGDVRVLTEGHVAADTLSRGQQKLVVCGLKLAQGQLMAEMGRGNCTY 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK----MFTVEKGKI 355 L+DD SELD + L+ L +QVF++ + + + E + MF VE G + Sbjct: 303 LVDDLPSELDLQHSSLVCGLLAGMNAQVFITCVHQNDIQAVWPEEKQQELAMFHVEHGSV 362 Query: 356 T 356 T Sbjct: 363 T 363 >UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RECF_THICR Length = 362 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 202/355 (56%), Gaps = 8/355 (2%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 ++ FRNIE A L G N +VG N +GKT+++EAI+TL GR+FR+ + ++I+ Q Sbjct: 9 LQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLIQQNQSE 68 Query: 68 FVLHGRLQGEERETAIGL--TKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 VL G L +R IGL T DK ++IDG A+++ +P+QL+TPE LL Sbjct: 69 LVLFGTLTEADRIHKIGLARTSDK---VTLKIDGELAKTQADMSAKLPVQLLTPESHRLL 125 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLA 185 GPK RR F+DWGCFH+ F W + +R LKQRN AL++ Q++ WD +L+ A Sbjct: 126 EEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKKRLPASQIQLWDAQLVDAA 185 Query: 186 EQISTWRAEYSAGIAADMADTCKQFLPEFSLT--FSFQRGWEKETE-YAEVLERNFERDR 242 E+I RA+Y + + + C+ +PE +++ ++ GW K E Y ++L NF +D Sbjct: 186 EKIDVIRADYITRLTPYLVEFCQALMPEITVSPECHYRPGWPKTAESYRQLLADNFAKDT 245 Query: 243 QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLID 302 +T +G H+AD++ R +G LSRGQ KL +CAL LAQ + S + LID Sbjct: 246 LQGHTQYGSHRADIKFRFNGQEALMILSRGQQKLFVCALLLAQATLYQQHSQNPVIMLID 305 Query: 303 DFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 D +ELD + R L L Q +++ + + + + E +K++ ++ G++ + Sbjct: 306 DLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKIWRIQHGELIE 360 >UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RECF_THISH Length = 360 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 9/360 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +R R + + G N + G NG+GKTS+LEAI+ L G +FR+ Q+ + Sbjct: 1 MILNRLEVRGLRILRHVRMDPVSGLNLVHGVNGAGKTSLLEAIHLLSTGHSFRTRQLSPL 60 Query: 61 IRHEQEAFVLHGRLQ----GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 + + +A + R+Q GE I T+D + RI G + +A+LA L+P+Q+ Sbjct: 61 LAPDCDAVEVVARIQSTGGGEPWPVGIRKTRDS---TTARIRGENVRSLADLARLLPLQV 117 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 + PE L++GGP YRRAFLDWGCFH +P + W + LL QRNAALR + L Sbjct: 118 MHPESHLLVSGGPGYRRAFLDWGCFHTDPAYHDHWRRYRHLLCQRNAALRDRSPARLLSA 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLE 235 WD L + RA + + + D+ KQ LPE S L ++RGW E +E L Sbjct: 178 WDTALGEAGSALDLARATHLQTLLPYL-DSLKQELPETSGLALEYRRGWNPEESLSESLA 236 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + +RDR +T GPH+A+L R DG PV SRGQ K ++ L++AQ +L G Sbjct: 237 HSVQRDRSAGFTQVGPHRAELLCRLDGRPVAQVASRGQQKSVVLMLKMAQSLWLMETLGF 296 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+DD +ELD RG L + L+ SQVFV+AI ++ V ++ +MF VE G + Sbjct: 297 PPVVLVDDLPAELDARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQMFHVEHGTL 356 >UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=Legionella pneumophila RepID=Q5X988_LEGPA Length = 353 Score = 233 bits (594), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 196/358 (54%), Gaps = 11/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ + I +FRNI + L L+P FN + G NGSGKTS+LEA+Y L +FRS ++ + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q + E+ I + K ++++++ ++LA+ +P Q+I + Sbjct: 61 ISYGQNQLNVFAH---AYDESTISVQKSITDGTQIKLNNQFCCTTSQLAYALPCQVIYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR+ LDWG FH + + W + KR+L QRNA L+ YE PWD++ Sbjct: 118 IFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFIPWDQQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET---EYAEVLERN 237 L LA Q+ R +Y L S T + +GW+++ E+L+++ Sbjct: 178 LSQLANQLDKARNDYFFQWQPKFYQVLSD-LTNISCTVEYYKGWDRKNAGQNIEELLQKS 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ DR YT +GPH+ADL I + V+ TLSRGQ K+++ AL+LAQG+ L ++ C Sbjct: 237 FDSDRNKLYTQYGPHQADLIISIEQYRVKHTLSRGQQKIILIALKLAQGQLLDKD----C 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LYLIDD A+ELDD + L L + Q ++ + + D+ +S +F V G I Sbjct: 293 LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSGLFEVNCGAI 350 >UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=Teredinibacter turnerae T7901 RepID=RECF_TERTT Length = 378 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 205/367 (55%), Gaps = 18/367 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +L RL I +FRN+ +A L G N + G NGSGKTS+LE+I L HGR+FR+ + R+I Sbjct: 3 TLRRLDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLI 62 Query: 62 RHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +++++F L G++ +G R IGL++ GD ++RID H ELA +P+ ++ Sbjct: 63 NNDEKSFTLFGQIFEGTTRN--IGLSRASNGDIQIRIDSKAAHTATELAECLPLLVMNSA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPWD 178 F LL G + RR F DW FH + F W R +KQRN+ LR ++TR E L PWD Sbjct: 121 SFQLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELL-PWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS------LTFSFQRGWEKETEYAE 232 +EL A+ I + R+E + QF +F+ L+ ++ GW K Y E Sbjct: 180 QELTKAAQHIESMRSEVFELFQTHFLNEIGQF--DFTETLGAELSCTYVSGWSKTGNYNE 237 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 LE FERD YT G HK+D++I P + LSRGQ K ++ AL LA+ Sbjct: 238 QLEDQFERDVAAGYTHIGSHKSDVKINLARVPAVEELSRGQQKSVIVALFLAEALVFRTT 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID----MSDENSKMF 348 +GR ++L+DD +ELD++ ++ LK SQVF +AI + ++ + DE+ +MF Sbjct: 298 TGRTPVFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAIDPKSILTGWELVDDESLRMF 357 Query: 349 TVEKGKI 355 V+ G++ Sbjct: 358 HVKHGQV 364 >UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV39_9GAMM Length = 370 Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 192/360 (53%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L++L I RN++ L+ P N + GANGSGKTS+LE+IY LG GR+FR + V Sbjct: 1 MFLSKLDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVV 60 Query: 61 IRHEQEAFVLHGRLQGEERETA--IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + ++ RL + ++ +G+ + +G + RIDG +L +P+QLI Sbjct: 61 VNSNAAELIVSARLNRDVSGSSHQLGIKRTSKGQFEARIDGQALQSAVQLVSELPLQLID 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPW 177 F LL GGP RR FLDWG FH E + W ++ LKQRN LR E L W Sbjct: 121 AHSFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLSTW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ELIPL EQI+ +R Y + ++ + F ++ + GW+ +V ++ Sbjct: 181 TAELIPLCEQITEFRQAYLSQLSKQIQIALSAFDGLGEISLEYYCGWDDSRSLQDVYVQD 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 RD T HG H+AD+RI+ DG P D LSRGQ+KLL+ AL+LAQ + G C Sbjct: 241 QARDIATKTTNHGAHRADIRIKVDGQPAADHLSRGQIKLLVYALKLAQAGHYREKLGESC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE-NSKMFTVEKGKIT 356 L+L+DD +ELD + RG + + L Q F++ + + + ++ KMF +E G+ + Sbjct: 301 LFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLLEKMPHKMFHMEHGEAS 360 >UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=Coxiella burnetii RepID=RECF_COXBN Length = 357 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 184/350 (52%), Gaps = 2/350 (0%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 L + FRN+ D+ FNF G NG+GKTS+LE+IY L GR+FR+ R+I+ Sbjct: 7 LKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLIQDNT 66 Query: 66 EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 + F++ L + +G+ +D GD +RI+G + A +P+ ++ L Sbjct: 67 DRFLIFITLYNGTQFIPLGVERDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMSHRFL 126 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLA 185 GP+ RR FLDW FH EP FF+ W L+R LKQRNAAL+ ++ WDK L+ Sbjct: 127 LDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALKAKLPLGEITHWDKMLVEDG 186 Query: 186 EQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLT 245 E++ R +QFLP + L + RGW ++ E L+ N ++D Q Sbjct: 187 ERLHQLRQNVVTEFRPLFTQMLQQFLPAYPLIGHYFRGWSEKYSLMEQLQINLKQDLQRG 246 Query: 246 YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFA 305 YT GP +AD R+ P +D LS+GQ KL+ AL AQG L ++G +YLIDD Sbjct: 247 YTQAGPQRADFRLTLRDLPAQDILSQGQQKLVTYALHFAQGLLLKEKTGISPIYLIDDLP 306 Query: 306 SELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 +ELD +R + + +SQVF+S I + +S +F V+ GK+ Sbjct: 307 AELDANKRDCVIDLVNYLESQVFISGIDPNEI--RLPPHSTLFHVKHGKV 354 >UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=Marinobacter RepID=RECF_MARAV Length = 373 Score = 223 bits (569), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 212/377 (56%), Gaps = 25/377 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L + FRN+ +A + SP FN L GANGSGKTSVLEAI LG GR+FR + V Sbjct: 1 MALVKLQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60 Query: 61 IRHEQEAFVLHGRL--------QGEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHL 111 + H Q + G L E+ E IG+++D ++++R+DG ++ LA Sbjct: 61 VAHGQSKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMH 120 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 +P+ +I P F ++ GGP RR FLDW FH EP F + W ++R+ QRN LR Sbjct: 121 LPVSVIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLD 180 Query: 172 EQL-RPWDKELIPLAEQISTWR----AEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK 226 E L R WD + LAE +S R + + +A+ ++ L F GW++ Sbjct: 181 ESLMRVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVE--GLKMDFYPGWDR 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 T EVL + E++R++ +T +GP++AD+R++ G PV +T SRGQ K L+ +++AQG Sbjct: 239 STALTEVLVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETFSRGQQKTLVILMKIAQG 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV------IDM 340 + L+ + G++ +L+DD +ELD R +LA L+ + QVF+++I EH D Sbjct: 299 KVLS-DLGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSI--EHPEPDTLWHDG 355 Query: 341 SDENSKMFTVEKGKITD 357 +MF VE G++T+ Sbjct: 356 DTPEYRMFHVEHGQLTE 372 >UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=Nitrosococcus oceani RepID=RECF_NITOC Length = 363 Score = 219 bits (559), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 195/365 (53%), Gaps = 13/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L IR+FRN++ +L S G N L GAN SGKTS LEAIY LG GR+FR++Q+ Sbjct: 2 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E+ + +++ G+ G + RI+ K ++LA +P+ ++ Sbjct: 62 IQAGMESLRVVAKVKQVGGSHTAGVEFGPAG-FRARINKDTVKKRSQLATQLPLLYMSSY 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPWD 178 +L+GGP+YRR +LDW FH EPGF W +R LKQRN LR + + +++ W+ Sbjct: 121 SHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLRVHKPSWQQEINAWN 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL------PEFSLTFSFQRGWEKETEYAE 232 K+L EQI++ R I + D+ Q P +T F++GW + E Sbjct: 181 KKLSTYGEQITSLRE----AILFKLQDSVSQLFTALAHQPISPVTMEFKQGWARTVRLEE 236 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 +L + DR YT +GPH+A++ DG V + LSRGQ K+ +L L+Q L R Sbjct: 237 ILNESLNYDRAAGYTRYGPHRAEVAFYVDGKDVREILSRGQQKVFCYSLALSQANLLYRT 296 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + C++LIDDF SELD + R L + L QVF + I + + N K F V+ Sbjct: 297 KEQNCIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHPNIKEFHVKL 356 Query: 353 GKITD 357 G++ + Sbjct: 357 GQVEE 361 >UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTW3_9GAMM Length = 357 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 193/354 (54%), Gaps = 4/354 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + FRN+ L P NF+ G N SGKTS+LEAI+ L GR+F S+ ++ Sbjct: 1 MTLARIEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR AF L +Q R T +G+ + G ++VR +G D ++E+A L+P +I E Sbjct: 61 IRQGCRAFTLGASIQVPPRTTWLGMERTP-GRTRVRCNGQDIWNLSEIAWLLPTHVINTE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 L G P+ RR+ LDWG FH E + W +R L+QRNAALR T QL R W+ Sbjct: 120 SQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALR--TGDSQLARAWEA 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L+ AE + + R Y + +++LPE L + FQ GW + + VL + Sbjct: 178 DLVTAAEAVDSSRRCYLNALWPHWHAFIEEWLPELELHWDFQSGWPRRDDLRGVLAQARG 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 R+ + +T +GPH+ DLR A LSRGQ KL ALRLAQ E + +R + Sbjct: 238 RELERGHTLYGPHRGDLRFIAGDVGAAQRLSRGQQKLAAIALRLAQAELTLKNGQQRPVI 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 L+DD A+ELD R + ++L +Q+ ++A+S ++ D ++F VE+G Sbjct: 298 LVDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQNELVLPGDGRFRVFHVEQG 351 >UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NAD5_9GAMM Length = 359 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/357 (36%), Positives = 193/357 (54%), Gaps = 9/357 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L +L + + RN+ T L L P + G NGSGKT++LEAIY LG G++FR Q +I Sbjct: 4 LRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLIA 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H+Q L R++ E +G+ K + + ++R+DG + +A LA L P+Q++ + F Sbjct: 64 HDQPYLRLIARIEKNGEEHLLGIEKSAR-EHRLRLDGQNLKNLAALAALTPVQILNSDNF 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 ++ GP++RR +LD+G ++++P F AW LK RNAALRQ R L PW+ L Sbjct: 123 AHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWRAADLAPWNHILG 182 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFS----LTFSFQRGWEKETEYAEVLERNF 238 QI T R Y + DT + E + +QRGW A +L+ N Sbjct: 183 ETGTQIDTLRRAY----LEKLEDTLNTYHAELGGYERIHIHYQRGWPAGQPLAALLDANN 238 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD L +T G H+ADLR ADG + SRGQ K L+CAL LAQ +T +SG + Sbjct: 239 ERDALLKHTRDGIHRADLRYHADGRDIAHHYSRGQQKTLICALILAQTRLITADSGTAPI 298 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LIDD A+ELD R+ L L + SQ++++ I + + + + + +E G I Sbjct: 299 ILIDDIAAELDRARQEKLLQFLADSDSQLYITHIDGDLELPPALADHQRLHIEAGHI 355 >UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RECF_HAHCH Length = 375 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 123/372 (33%), Positives = 207/372 (55%), Gaps = 17/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+R+ + RNI + L S G NGSGK+S+LE +Y LG G +FR+ ++ Sbjct: 1 MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLI 117 + H + V G E+ + IG+++ K G ++VRI+G ++ELA +P+ ++ Sbjct: 61 VSHLSDEMVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPILIV 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLR 175 TP+ F +NGGP RR F+DWG FH E F W N ++LL QRN L+ ++R E L Sbjct: 121 TPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSE-LS 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-----SLTFSFQRGW-EKETE 229 WD + + +++IS +R Y A + + ++ K+ + LT + GW + + Sbjct: 180 AWDNQYVAYSDEISRYRDAYFAELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDVN 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + + L + E D + +T GPH+AD++++ G ++ LSRGQ K L+ L L+Q E L Sbjct: 240 HMDQLASSVESDVKKGFTTLGPHRADIKVKVGGVHAKEVLSRGQQKTLITHLYLSQLEIL 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI---SAEHVIDMSDE--N 344 R + +R + LIDD +ELD + L +R+ +QVFV+ + +E++ ++ + Sbjct: 300 RRRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYLFGHFNQEYD 359 Query: 345 SKMFTVEKGKIT 356 ++MF VE+G +T Sbjct: 360 TQMFHVEQGAVT 371 >UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=Congregibacter litoralis KT71 RepID=A4A954_9GAMM Length = 352 Score = 211 bits (538), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 184/336 (54%), Gaps = 7/336 (2%) Query: 26 NFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHG-RLQGEERETAIG 84 N + G NGSGKTS+LEA + LG R+FRS +I H +E++V+ G R AIG Sbjct: 5 NVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSMAIG 64 Query: 85 LTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNE 144 + ++K G +R+ G V+ LA +P+ LI + F LL G P RR FLDWG FH E Sbjct: 65 VQREKAGAISLRLAGEPSRSVSRLADELPLLLINSDSFDLLVGEPANRRRFLDWGVFHVE 124 Query: 145 PGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADM 203 + +R L QRN LR+ +L+ W ++L AE++S+ R + + Sbjct: 125 HELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFLESLREVF 184 Query: 204 ADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADG 262 + PE + ++RGW+ + Y EVL+R+ D++ +T GP +AD+R+ G Sbjct: 185 EPLIAELAPEIGPVALVYRRGWDASSSYEEVLQRSLTSDQEQGFTQTGPQRADIRVTVGG 244 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA 322 +TLSRGQ KLL+CAL+LAQG+ L E G LYLIDD SELD ER + L A Sbjct: 245 YSAAETLSRGQQKLLVCALKLAQGQILASEQG-NVLYLIDDLPSELDAERCERVCRTLAA 303 Query: 323 TQSQVFVSAISAEHVIDM---SDENSKMFTVEKGKI 355 Q Q ++ ++ + S+ + MF V++G++ Sbjct: 304 MQVQTLITCVTRSAIPASWLGSESDVAMFHVKQGQV 339 >UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLI8_9GAMM Length = 370 Score = 209 bits (531), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 21/367 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L I RN+ A L N + G NGSGKTS+LEA + LG R+FR+ +I Sbjct: 4 LASLNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLIT 63 Query: 63 HEQEAFVLHGRLQGEERET------AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 H ++ +V+ G RE+ ++G+ + K G +R+ G V++LA +P+ L Sbjct: 64 HGEQTYVVQG-----NRESPGGGCVSLGVQRQKGGGMSLRVAGEPSRSVSQLADELPLLL 118 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLR 175 I + F LL G P RR F+DWG FH E +R L QRN LR+ +L Sbjct: 119 INADSFDLLVGEPANRRRFMDWGVFHVEHNLRDHRRRFQRALTQRNHLLRRGKLDASELE 178 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVL 234 W ++L AE +S R + A + + PE + +++RGW+ YA+ L Sbjct: 179 VWTRDLAVHAELVSAGRDRFLAALKEVFEPLVNELAPEIGPVDLAYRRGWDASLGYADAL 238 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 +R+ D++ +T GP +AD+R+ G DTLSRGQ KLL+CAL+LAQG+ L + G Sbjct: 239 QRSLASDQEQGFTQSGPQRADIRVTVGGYSAADTLSRGQQKLLICALKLAQGQILAGQRG 298 Query: 295 RRCLYLIDDFASELDDER-----RGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 LYLIDD SELD ER R L A R++ + V SAI E + S MF Sbjct: 299 -GVLYLIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAIPVEWL--GSGAEVAMFH 355 Query: 350 VEKGKIT 356 VE+G++T Sbjct: 356 VEQGRVT 362 >UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=Colwellia psychrerythraea 34H RepID=RECF_COLP3 Length = 377 Score = 207 bits (527), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 187/335 (55%), Gaps = 6/335 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS+ RL +FRN+ + + L P NF +G NGSGK+S+LEA++ LGHG++FR+ ++ + Sbjct: 1 MSVARLTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFRTSKVEHL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +E + FV+ + + + +GL+K+ Q G + ++I+G +++ELA + +Q++TP Sbjct: 61 ACYETDNFVVSIK---DVNDLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQIVTP 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 E F L GGPK RR F++ G FH + W R+LKQRNA +R W Sbjct: 118 ESFKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRHNLDKATFDYWTG 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETEYAEVLERN 237 L+EQ++ R++Y + +++ + LP + +T + +GW ++ + L + Sbjct: 178 LFCQLSEQVAEVRSQYITNLISELPYWLEILLPNIADKVTVQYLQGWPQKKNLMDSLNDS 237 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ER++ Y+ +G HK D++ +E LSRGQ KL + AL AQ + + R + + Sbjct: 238 HEREQAFGYSIYGAHKFDVKFLIAKQALESQLSRGQQKLFLLALTFAQAKLIARVNRVKP 297 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 + LIDD +ELD R L+ L QV ++AI Sbjct: 298 ILLIDDIGAELDINSRESLSQALSILDCQVIITAI 332 >UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=Methylococcus capsulatus RepID=RECF_METCA Length = 359 Score = 207 bits (526), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 137/356 (38%), Positives = 182/356 (51%), Gaps = 2/356 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L I D RNIE+A L+ G N L GANGSGKTS+LEAIY L G++FRS Q GR+ Sbjct: 1 MALLKLDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++ + G + A+G+ + + +VR+ G A+L L P LI P Sbjct: 61 IRFDRPCLTVSGSIGRPGAGIAVGVRLGRS-EKEVRVGGRSCDSSAQLIRLFPAVLIHPA 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 LL G P++RR LDWG FH E G+ R L+QRNA LR L W E Sbjct: 120 SVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVLRGDAPGSSLAAWSGE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L I+ R+ Y I + L + + GW YA+ L + Sbjct: 180 LARWGTMIAELRSSYLDRIRMHFGEMVSALLGRTDVELVVRPGWRAGWSYADALAASQPT 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 DR+L YT GP K D + G P D LSRGQLKLL AL LAQ L + R L Sbjct: 240 DRRLGYTEPGPQKGDFAVLVGGRPARDYLSRGQLKLLTYALLLAQAGLLEADQPGRVCLL 299 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISA-EHVIDMSDENSKMFTVEKGKI 355 +DD ASELD + L S +K+T Q FV+ A + V + +++F VE+G+I Sbjct: 300 VDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTARVFHVEQGRI 355 >UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWH9_DICNV Length = 356 Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 116/356 (32%), Positives = 200/356 (56%), Gaps = 5/356 (1%) Query: 1 MSLTRLLIRDFRNIETAD-LALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M + L + FR++++A LA P N + G GSGKT++LEA+Y LG G++FR+ Q+ Sbjct: 1 MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I ++Q F L L ++ +G+ + +G +VR+DG + ++ LA L+P+ ++ Sbjct: 61 MIAYQQSYFRLIAELSDQDGNYFLGMERRARG-YRVRLDGQTLNGLSALAALLPVHIVYA 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + F+LL P+ RR FLD+G F ++ F W + LK RN AL + + +R W Sbjct: 120 DHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQDHYIRSWHP 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L AE+I R +Y + + +L + RGW + + L+ N Sbjct: 180 LLAETAEKIDILRRDYLKRLENRLNQYHAHLGGLQTLRIRYDRGWHGDLR--QTLDENLA 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT G H+AD R+ + + T SRGQ K ++CAL L+Q + + S + + Sbjct: 238 RDQQIKYTRDGIHRADWRLFCEDYDIAHTFSRGQQKTVLCALILSQADEIRARSKKVPVI 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +ELD ER+ LL L+A+++Q+F++A+ A+ ++ +SD + + F +++G I Sbjct: 298 LVDDITAELDIERQQLLLRFLQASEAQLFITALEAK-LLAISDSDCEQFYLDRGHI 352 >UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax=Acinetobacter RepID=RECF_ACIB3 Length = 360 Score = 202 bits (515), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 191/362 (52%), Gaps = 12/362 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL I RN++T L FN GANGSGKTS+LEAI+ L GR+FR+ Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++E + ++ + E+ IG+ K G+ ++++G +LA L+P+Q I P+ Sbjct: 61 IQYEADDAIVFAQSATEK----IGMQKLASGEQLMKVNGDTVATQGQLAKLLPLQHIDPQ 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL--RQVTRYEQLRPWD 178 +++ G K RR LDW FH EP F+ AW R LKQRN L R+ L PW+ Sbjct: 117 STDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEPWN 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 K L E + + R + Q LP+ + + G+ E + L Sbjct: 177 KMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQH 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ++D + YT +GPH+ADLR++ +D LSRGQ KLL+ AL+L+Q L S + + Sbjct: 237 QKDIERRYTEYGPHRADLRLKTPFGHADDVLSRGQKKLLIIALKLSQIAML-HASNKETV 295 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAIS----AEHVIDMSDENSKMFTVEKGK 354 L+DD +ELD + L RL SQVF++ + +H+ D+S + ++F+VE G+ Sbjct: 296 VLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLSI-SYQLFSVESGQ 354 Query: 355 IT 356 ++ Sbjct: 355 VS 356 >UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACS5_ALHEH Length = 354 Score = 202 bits (514), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 193/347 (55%), Gaps = 11/347 (3%) Query: 11 FRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVL 70 RN++ +L G N +VGAN +GKTS+LEAIY + R+FR+ + ++I + EA + Sbjct: 8 VRNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNGHEALWV 67 Query: 71 HGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPK 130 + QG IG+ +D Q +++VR+DG DG ++ELA +P+Q+I E LL GP Sbjct: 68 RAQTQGH----TIGVARDSQ-ETQVRLDGRDGRSLSELARYLPVQVINSEHQRLLLDGPA 122 Query: 131 YRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW--DKELIPLAEQI 188 RR+FL+W FH EP F T W R L+QRNAAL+ E W D+ LI A+ I Sbjct: 123 VRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKA---GESRLAWAYDEGLIETADTI 179 Query: 189 STWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTA 248 R + + +++LP+ + ++ GW + A+ LE E DRQ +T Sbjct: 180 DRNRRHLIDALEPRWSALVRRWLPDEPVALHYRPGWRSDEPLADRLEAQRELDRQRGFTN 239 Query: 249 HGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASEL 308 GPH+ADL R G + LSRGQ KLL+ AL LAQ +G+ L+DD A+EL Sbjct: 240 SGPHRADLSFRVAGVEAQHRLSRGQQKLLVLALLLAQAAVTHTLTGQSLTLLVDDLAAEL 299 Query: 309 DDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 D RR + + ++ +Q F++AI I ++ + ++ F VE+G+I Sbjct: 300 DPARRAAVVEAIASSGNQAFLTAIEPGD-IPLAPDAAQWFHVEQGRI 345 >UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUE9_9GAMM Length = 357 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 189/356 (53%), Gaps = 4/356 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L I RN++ A ++L N L G NGSGKTSVLEAI+ L GR+FR+ VI Sbjct: 2 IKQLAIEGVRNLD-ASVSLGSSANLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVIG 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ ++ + R +G+ + K G RI+G +A LA ++P+ ++ Sbjct: 61 FDRDHCLVTATVTEGNRNQQLGIQRSKDGSVIARINGEAVTSLAMLAEVLPVVVMDSGIV 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 +L++G P+ RR F+D FH E F AW +R L+QRNA LR+ T E W +E+ Sbjct: 121 SLIDGQPEGRRRFIDASVFHVEQSFLPAWRRFQRALRQRNAGLRRGT-LEGDEAWRREVA 179 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFERD 241 ++++ R+ + A + + + + + F+ GW+K E LER+ E D Sbjct: 180 SAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALVFRAGWDKTVGLLEALERSLESD 239 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R +T GPH+AD+++ DG P + +SRGQLKL AL+LAQG + ++S +YL+ Sbjct: 240 RLQGFTHVGPHRADIKLLIDGRPAAEVMSRGQLKLAATALKLAQGGLIAQQSRSTPVYLV 299 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM-SDENSKMFTVEKGKIT 356 DD +ELD + +L A QV +A+ + V S +F VE+G + Sbjct: 300 DDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDRDEVPAFWSGSELTLFHVEQGSVV 355 >UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax=Xanthomonadaceae RepID=RECF_XANC5 Length = 368 Score = 192 bits (488), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 175/363 (48%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL I R T +L S N L G NG+GKTSVLEA++ + +GR+FR + Sbjct: 1 MHVVRLSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 61 IR---HEQEAFV--LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 I+ ++ E FV G ER GL Q + R+DG D ++ L + + Sbjct: 61 IQQGANDLEVFVEWKEGNGAAGERTRRAGLRHRGQ-EWTGRLDGEDVAQLGALCAALAVV 119 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 P L++GG + RR FLDWG FH EP F T W R LKQRNA L+Q + L Sbjct: 120 TFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQGAQPRMLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT-FSFQRGWEK-ETEYAEV 233 WD EL E +++ R Y + + P L+ +F GW++ E A+ Sbjct: 180 AWDHELAESGESLTSRRTRYLERLQERLVPVADAIAPALGLSALTFAPGWKRHEVSLADA 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L ERDRQ YT+ GPH+AD P D LSRGQ KL A LAQ E E Sbjct: 240 LLLARERDRQNGYTSQGPHRADWVPSFQALPGRDALSRGQAKLTALACLLAQAEDFAYER 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G + +DD SELD +G + RL + +QV ++A + + + F VE G Sbjct: 300 GEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAGALLQQFHVEHG 359 Query: 354 KIT 356 IT Sbjct: 360 HIT 362 >UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=Halorhodospira halophila SL1 RepID=A1WWD8_HALHL Length = 349 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 186/355 (52%), Gaps = 10/355 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + FRN+ L P N + G NG+GKTS+LEAIY L R+FR+ Q R+I Sbjct: 1 MERLEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFRTRQNDRLIG 60 Query: 63 H-EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 +EA V+ R G +R +G + G +++R++G D H + LA +P+QL+ E Sbjct: 61 WGAEEARVVAVR--GHDR---LGAARTP-GHTRLRLNGADAHTRSALAARLPVQLMNTEH 114 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 LL GP+ RR FLDWG FH EP + + L+QRNAALR R + + W L Sbjct: 115 QRLLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVGDRRSE-QAWTPVL 173 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 I A + R + + ++ +Q+L SL + RG E + VL+ ERD Sbjct: 174 IRCAAAVDVARQRFIEALRPIWSEFARQWLGLESLELRYYRGAAAELPWERVLDEQLERD 233 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R +T GPH+ADL + D P D LSRGQ KLL+ AL +A+ + +R+ G + LI Sbjct: 234 RTAGFTHRGPHRADLILSRDRIPAADALSRGQQKLLVVALLIAEVKLWSRQ-GLTPVLLI 292 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 DD +ELD + + +QVF++AI + + + V +G+++ Sbjct: 293 DDLPAELDPAHLHTVLDTVTGDPTQVFLTAIDGA-ALPTDLPPGQWYQVCEGRVS 346 >UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z2Y7_9GAMM Length = 376 Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 187/361 (51%), Gaps = 13/361 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L + I RN+ L + N + G NGSGK+S++EA+ L GR+FRS + VI+ Sbjct: 10 LESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSSVRSVIQ 69 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H ++ ++ +++ ++G+ + K G+ +R+DG +AE A +P +I P Sbjct: 70 HGRDDCIVQAQVRYRGSVRSLGIRRSKTGELTLRLDGEPMSSLAEFAAQVPTIIIDPSST 129 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G P RR +D FH E GF W +R+LKQRNA LR+ Q PW +EL Sbjct: 130 DTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQRNAMLRRGMMRGQ-DPWLRELS 188 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS-----FQRGWEKETEYAEVLERN 237 + ++ +R G+ + + K L E + + F+ GW+ L R+ Sbjct: 189 RVGSDLTNYR----VGLVSRLGPVFKSILAELNSALADTELVFRFGWDASLSLEAGLARS 244 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 E D +T GPH+ADLR++ G + D SRGQLKL + ALRLAQG L G Sbjct: 245 TESDIAQGFTHVGPHRADLRLQWQGRSMSDVFSRGQLKLAVIALRLAQGRVLAESGGGAP 304 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS--AEHVIDMSDENSKMFTVEKGKI 355 LYL+DD +ELDD + L+ T SQV ++ +S A+ M D +S +F VE+G + Sbjct: 305 LYLVDDLTAELDDHHALQVCRMLEQTSSQVVLTTVSELAQERPWMHDVSS-VFHVEQGCV 363 Query: 356 T 356 + Sbjct: 364 S 364 >UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5A3_9GAMM Length = 325 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 161/313 (51%), Gaps = 7/313 (2%) Query: 49 GRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAEL 108 GR+FRS + +++ +Q+ + R + T IGL D Q +R++ ++++L Sbjct: 2 GRSFRSRALKHLVKKQQQRLTVFARSMDQ---TPIGLQYDLQSGLLIRLNNAPLKRLSDL 58 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 A +P+Q I GPKYRR +DWG FH E F W + K+ L+QRNAA+R+ Sbjct: 59 AAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNAAIRKY 118 Query: 169 TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF---SLTFSFQRGWE 225 ++ WD LI +I+ +R Y + + +Q PE S +Q+GW Sbjct: 119 KPCNEIALWDTHLIKHGMKITEFRQGYLQQLVKEFLPLFRQLCPELETASFVLRYQQGWN 178 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 KET++A+ L N ERDR L YT G H AD ++ D + LSRGQ KL AL +AQ Sbjct: 179 KETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGDPYEMLSRGQQKLFFLALSMAQ 238 Query: 286 GEFL-TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + L ++ + LIDD +SELD + + L+ Q F+S+ + + + +N Sbjct: 239 IKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFISSTNDDLSQLLKADN 298 Query: 345 SKMFTVEKGKITD 357 K F V+ G I++ Sbjct: 299 EKKFHVKHGVISE 311 >UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT5_9GAMM Length = 357 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/366 (33%), Positives = 187/366 (51%), Gaps = 24/366 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L R RN+ G N LVG NG+GKTSVLEA + L GR+FR+ Q+ RV+R Sbjct: 2 LEGLWWRGVRNLSEQTFEPGEGINRLVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVR 61 Query: 63 HEQEAFVLHGRLQ----GEERETAIGLTKDKQGDSKVRIDG--TDGHKVAELAHLMPMQL 116 ++ + GR++ GE R L +G + R+DG +GH A +A +P+++ Sbjct: 62 SGEKGLWIGGRVRDLHGGEHR-----LGVSWEGTRRSRLDGRWMEGH--ASVAEWLPVRV 114 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 + F LL G P+ RR LDWGCFH+ G+ W +R +QRNAALR+ R R Sbjct: 115 LHAGSFDLLTGSPEERRRLLDWGCFHSVRGYRWHWQQWRRSHEQRNAALRKGDR-RAARE 173 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-----LPEFSLTFSFQRGWEKETEYA 231 +++ L+ E I+ R Y + ++ + F L +F + GW+++ + Sbjct: 174 FERPLVDAGENITQARQAYIDRWEINTSEAARVFGFSQRLGDFQVHLRV--GWDRDRSLS 231 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E + R+ + D + + GP +AD+ +R DG V SRG+ K L+ AL Q L R Sbjct: 232 EAIARSRDSDEERGFGQVGPQRADIDLRFDGR-VAAEASRGEQKRLITALTGGQARMLER 290 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM-SDENSKMFTV 350 E+GR + L+DD SELD L L QV V+ + H+ + ++++F V Sbjct: 291 EAGRAPVVLLDDVVSELDVAAVEGLMCGLLEFGWQVLVTTVEP-HIPGLEGGRSTRLFHV 349 Query: 351 EKGKIT 356 E G +T Sbjct: 350 EHGVVT 355 >UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ54_9GAMM Length = 390 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 124/381 (32%), Positives = 190/381 (49%), Gaps = 31/381 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L I FRN+ T +L S N +G NGSGKTS+LE+IY L G++FR Q Sbjct: 1 MQIIQLAIHHFRNLHTIELQPS-SCNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + RL + + + K + +++R++G + LA L+P L+ P Sbjct: 60 IEHGFSDTTVFARLNHGQ---TVAIAKSQDATTQLRLNGQSLVTQSPLAQLLPTLLLEPV 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------VTRYEQ- 173 L G + RR LDW FH E F W +RLLKQRN+ L+Q +T +Q Sbjct: 117 SLAQLEDGSQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLTSLQQH 176 Query: 174 -LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETEY 230 L WD +L AE+I RA+ ++FLP+++ L + G++ E Sbjct: 177 ELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQKFLPQYAEKLRLRYTPGFDTEAGL 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE-------------DTLSRGQLKLL 277 A L D +L YT G H++D+ + D + D LSRG+ KLL Sbjct: 237 AITLANRLASDIELGYTRMGCHRSDINVVLDLVHTDAAGHKHKQTLLATDMLSRGEKKLL 296 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS---A 334 + ALRL+Q L + + L L+DD +ELD++ LL + LK SQ+F+++++ Sbjct: 297 VMALRLSQLPLLN-QVDKVPLVLVDDITAELDNDALMLLLTGLKQVNSQLFITSLTQDIV 355 Query: 335 EHVIDMSDENSKMFTVEKGKI 355 E + + +N K+F VE+G I Sbjct: 356 ESIQKIWQDNIKLFQVEQGSI 376 >UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU2_HALNC Length = 359 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 111/358 (31%), Positives = 174/358 (48%), Gaps = 11/358 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ----IG 58 LT L I FRN+ D LS GFN LVG NG+GKTSVLEAIY L ++FR+ I Sbjct: 6 LTSLSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLIA 65 Query: 59 RVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 R ++ V+ + ++ + + L + K ++R+ + + + +P+ + Sbjct: 66 RYPDRDRGCAVVRAGVHQDDHDFFMALERCKD-QFRLRLGREEVPRASLFVAHLPVLALH 124 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 + L+ GP++RR F+D F+ F A++ R+LKQRNAALR E WD Sbjct: 125 AQSDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQSTE---IWD 181 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 I E+++ R + + + P+ S+ F G + + +E L RN Sbjct: 182 PLFIQYGERLNEQRVAALDLLKTVLPQVFEALAPQLSVDMQFHPGHKSGLDLSEALARNR 241 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR++ T GP +AD+ + + SRGQ+K+ AL LA + G+R + Sbjct: 242 ERDREMGQTLIGPQRADILFTLNDYAFKSFASRGQIKVFTAALTLATAHIWQAQRGKRAV 301 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 L DDF SE D L L QVF+SA+ + ID + +F ++ G+I+ Sbjct: 302 LLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQ-IDFPFD--AVFRLDAGQIS 356 >UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJ66_ACIF5 Length = 350 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 110/338 (32%), Positives = 174/338 (51%), Gaps = 10/338 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L I+ R IET DL +N+L+GANG+GK+SVLEAI+ LG G+ +R V Sbjct: 1 MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +A+++ L G + L + + + ++R DG L ++P+Q + + Sbjct: 60 LREGDDAYLVSAHLSGH----FLALRRRGE-EREIRYDGEPLGSAWLLLDILPLQSLHED 114 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++G + RR LDWG ++ + + T + +R L+QRNA L+ +PWD Sbjct: 115 NSHFVSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSD---HGRQPWDDG 171 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 +I E I R + A + ++ +++ S L+ GW++ + L R+ E Sbjct: 172 VIVAGEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEGMALGDCLLRDHE 231 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +DR+ YT GPH+A+L R G P D LSRGQL++L A RLAQ + L + Sbjct: 232 QDREAGYTHSGPHRANLAFRVRGKPAPDILSRGQLRVLGLAYRLAQVKILKQAGLPLPTI 291 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 LIDDFA+ELD R + L Q+F + +A + Sbjct: 292 LIDDFAAELDASARDWWVNELDLLGVQIFAAVTTARQI 329 >UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=Alcanivorax RepID=Q0VT28_ALCBS Length = 332 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/326 (31%), Positives = 160/326 (49%), Gaps = 10/326 (3%) Query: 39 VLEAIYTLGHGRAFRSLQ-IGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI 97 +LEAIY +G G + R++R EA L+ + G + IG+ + G +++ Sbjct: 1 MLEAIYFIGSGGRSFRGGRLSRLVRDGAEAATLYAEVVGVQDVHRIGIRRTPGGIDAIKL 60 Query: 98 DGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRL 157 DG ++E+A L+P+ + P L+ G + RR F+DWG FH E F W Sbjct: 61 DGQTPKALSEVAVLLPVLALHPTSVELVFGASQLRRRFMDWGMFHVEHQFMPVWRAGSAA 120 Query: 158 LKQRNAALRQVT-RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL 216 LKQRNA LR +L W+++L +++I R Y + + + PE + Sbjct: 121 LKQRNALLRAGNPNLRELGFWNQQLSQTSDRIEGLRRGYLNALQRGLDEALTVLAPELKI 180 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 Q G K YA+ L R D + ++ G H++D+RI + G D LSRGQ KL Sbjct: 181 RLRLQTGLHKGESYAQALSRLQSDDLRRGFSQAGFHRSDIRIESHGVVARDRLSRGQAKL 240 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + L LAQ ++ +SG+ C L+DD A+ELD+E R L L T Q ++A+ Sbjct: 241 VAYGLVLAQLPMIS-QSGKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQ 299 Query: 337 VIDMSDEN-------SKMFTVEKGKI 355 + ++N +KMF VE GK+ Sbjct: 300 WAAIVNDNDALQSVENKMFHVEHGKL 325 >UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAH6_CHRVI Length = 366 Score = 153 bits (387), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 168/360 (46%), Gaps = 20/360 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L L I RNI DLA L GANG+GKTSVLEAIY L GR FR + G + Sbjct: 14 GLRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTKAGPLT 73 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKV-------AELAHLMPM 114 + + GR Q +R+ + L K+G + VR D H A+ + + Sbjct: 74 TQGEFYTRVEGRYQPSDRDV-VRLRYVKEGATAVR----DIHPPLWAETGGADWRSPLQV 128 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL 174 +L+ LL+G P RR FLDW FH E F + R+L QRNAA+R + QL Sbjct: 129 KLVGENAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIR--SGGSQL 186 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 WD+ I LAE + RA + A D C + ++RGW E E L Sbjct: 187 GLWDRRFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLHGTDLRYRRGWPDGRELGETL 246 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 +++ YT GP +AD RI D SRGQ K+++ L+LA E + R G Sbjct: 247 VALADQELARGYTLAGPSRADFRI--DPGEGRRGFSRGQTKIVVALLQLA-AERVHRAHG 303 Query: 295 RR-CLYLIDDFASELDDERRGLLASRLKATQSQVFVS--AISAEHVIDMSDENSKMFTVE 351 R ++L+DD +ELD L S AT +QV + A + I + E+ MF VE Sbjct: 304 REPVIWLLDDLEAELDRTLAERLWSAFGATGNQVIATRVATDGDPGIFGNTESLTMFHVE 363 >UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTD9_9GAMM Length = 357 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/363 (31%), Positives = 174/363 (47%), Gaps = 16/363 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L IR+ R IE LA P +N+LVGANG+GK++VLEA++ LG G+++R ++ Sbjct: 1 MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRR-GPRQL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLT-----KDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 IR F+L R +GL + G+ ++R G L L+P+Q Sbjct: 60 IRDGSSCFLL-----SVLRNEDLGLNDRIVLEQNGGERQMRFAGEHLRSQWALLELLPIQ 114 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 I + G RR LDWG + + +RLL QRNA LR E Sbjct: 115 AIHSGNSEFIAGSADDRRRQLDWGIYRRHREYGDHLRQYRRLLAQRNAWLRSQGHKED-- 172 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVL 234 PW+ L E + +R+ A + + K+ S + Q GW +AEVL Sbjct: 173 PWEHLLAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHLQSGWRDGMRFAEVL 232 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + D + +T GPH+A++ R DG D+LSRGQL+ L RLAQ + + Sbjct: 233 REDRSSDAETGFTRSGPHRANILFRVDGRSAADSLSRGQLRTLGNCFRLAQLQAIKDSGL 292 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + LIDDFA+ELD R +L A QVF + A + M+ E+ + +T++ G+ Sbjct: 293 ELPVVLIDDFAAELDPAGRLWWRQQLDALGVQVFAAGTEAA-ALPMNAEDCQ-WTIQAGQ 350 Query: 355 ITD 357 + + Sbjct: 351 LRE 353 >UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=Psychrobacter RepID=Q4FVT1_PSYA2 Length = 404 Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 120/405 (29%), Positives = 189/405 (46%), Gaps = 58/405 (14%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL I RN+ +LA N ++GANGSGKTS+LE ++ L G++FR Q R I+ Sbjct: 2 IERLQISYLRNLTPINLA-PAACNVIIGANGSGKTSLLEGMFLLSRGKSFRHNQPKRYIQ 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSK--VRIDGTDGHKVAELAHLMPMQLITPE 120 H ++A +H +L + R AI KQ D+ +R++ T + + L +P LI P Sbjct: 61 HHKDAATVHAKL-SDGRTLAI----QKQADATTILRLNQTTVYNQSILTEQLPTLLIDPS 115 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQLR 175 +L G RR LDW FH + GF W +RLLKQRN+ L+Q + +LR Sbjct: 116 TMDMLEQGSASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRHLTHVQLAELR 175 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETEYAEV 233 WDK L A I +R +++ Q LP ++ L+ S+ G++ Sbjct: 176 AWDKGLASHAALIHHYREAIFEAWQPYFSESIAQLLPAYAEQLSLSYNAGYDTSVALDIQ 235 Query: 234 LERNFERDRQLTYTAHGPHKADLRIR---------------------ADGA---PV---- 265 L ++D QL YT G H+AD+ + AD P+ Sbjct: 236 LNERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHLNSPLAAAADSTFKLPILKEQ 295 Query: 266 -EDTLSRGQLKLLMCALRLA------------QGEFLTRESGRRCLYLIDDFASELDDER 312 + LSRG+ KLL+ ALRL+ + + + L+DD +ELDD Sbjct: 296 AANILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAKLSATPVVLLDDITAELDDRA 355 Query: 313 RGLLASRLKATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 +L S L QVF+++++ + + + E ++F +++G I Sbjct: 356 IEILLSTLAQLPCQVFMTSLTDSILPLVYEYWEKPQVFHMKQGSI 400 >UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=Clostridium RepID=RECF_CLOCE Length = 372 Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 102/373 (27%), Positives = 179/373 (47%), Gaps = 23/373 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L++ ++RN + S FN G NG GKT++LEAIY GR+ R+ + + Sbjct: 1 MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSEL 60 Query: 61 IRHEQEAF---VLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 I+ E F V + G +++ I ++++ +++I+ K+ L + L Sbjct: 61 IKFGCENFSIAVHVSKTGGLDKDIEISYYENQK--KQIKINDIPIKKIGALMGNLYAVLF 118 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP- 176 +PE ++ GP RR F+D +P +F + ++LKQRN L+ ++ +L Sbjct: 119 SPEDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMDT 178 Query: 177 ---WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP------EFSLTFSFQRGWEKE 227 W+ L +A I R +S ++ MA+ FL F SFQ + + Sbjct: 179 VDIWNMRLAEVAAAIIKARRTFSIMLSG-MAENQHNFLTGKSEKISFDYRCSFQISGQDD 237 Query: 228 TE-----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 TE Y LE++ +RD L YT GPH+ D I + ++ S+GQ + + +L+ Sbjct: 238 TEQIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKLYGSQGQQRSAVLSLK 297 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 +A+ E + + + + + L+DD SELD R+ L +K Q+ F++ + EH ++ Sbjct: 298 IAEIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKEVQT--FITCTNKEHFGNLLS 355 Query: 343 ENSKMFTVEKGKI 355 NS F + G I Sbjct: 356 ANSNFFKIVGGNI 368 >UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=Geobacter sp. FRC-32 RepID=RECF_GEOSF Length = 364 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 100/371 (26%), Positives = 189/371 (50%), Gaps = 25/371 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ ++ FRN++ L + FN G NG GKT++LE+I+ + ++F++ + + Sbjct: 1 MKLNKIYLQSFRNLQETMLMPAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSDL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + +L G ++ G RE A+ L D QG K+R+D ++ + + + + T Sbjct: 61 VRWGAISSLLKGWVERDGVTREIAVFL--DNQG-KKIRVDQKAVTRIDDFFGHLNVVVFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE ++ G P+ RR +LD F ++ + + + ++LK RN L++ + W Sbjct: 118 PEEVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRGEK-ASFDIWT 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-----LTFSFQ---------RGW 224 ++L+ + I R Y + D K+F E S + S++ RG Sbjct: 177 EKLVEQGKNIILSRLAYLDA----LRDLLKRFYREISGNEEAVDISYRPYHMDLADCRG- 231 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 + +AE L + + + T GPH+ D+ +G P++ S+GQ K + AL++A Sbjct: 232 DVADAFAEALAKTATEEERRGTTLAGPHRDDVEFILNGRPLKQFGSQGQQKSYVLALKMA 291 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E+L ++ + ++L+DD +SELD ER+ L LK QVF++ S +++ EN Sbjct: 292 ETEYLQKKFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTTSLQNINVDEIEN 351 Query: 345 SKMFTVEKGKI 355 + + +E+GK+ Sbjct: 352 YRTYRIEEGKV 362 >UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=Desulfuromonadales RepID=RECF_GEOLS Length = 368 Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 178/363 (49%), Gaps = 9/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ + +RNI+ A + + L G NG GKT+ LE++Y LG+ R FR+ ++ + Sbjct: 1 MFLKQVWLEQYRNIQKACIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + + G + E+ I L + +V ID H+ A+L + + + +P+ Sbjct: 61 ISHGSRSAAVRGLVLAAGVESTIVLHVEN-STRRVTIDDKAVHRAADLHGKLAVVVFSPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ GP+ RR +LD + ++ F + + R+LKQRNA L+ + L W ++ Sbjct: 120 DTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLK-TNQQAGLDLWTEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLERN 237 L ++ R Y++ + + +Q E S+ + E E+L Sbjct: 179 LATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPDVICTAEENGTELLLNV 238 Query: 238 F----ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 F E+D + T GPH+ DL P++ S+GQ + + AL++A+ + L Sbjct: 239 FRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLKSFGSQGQQRSFVLALKMAELDHLQETF 298 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G L L+DD ASELD ER L S ++ + QV ++ + + ++SK+F VE+G Sbjct: 299 GEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQQDSKLFRVEEG 358 Query: 354 KIT 356 ++T Sbjct: 359 RLT 361 >UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RECF_PELCD Length = 363 Score = 144 bits (362), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 114/368 (30%), Positives = 169/368 (45%), Gaps = 18/368 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+++ ++RNIE A+L FN L G N GKT+ LEAIY LGH ++FR + + Sbjct: 1 MILTRIILHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL 60 Query: 61 IRHEQEAFVLHGRLQGE-----ERET-AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 I H R+QGE RET +I +T DK+ + I+G + E+ P Sbjct: 61 IGSADR----HTRVQGEFLRDGLRETVSITITGDKK---NIEINGKRPRQSNEMFGRFPS 113 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL 174 L PE +L G P RRA LD P F +R L+QRN L+ + Sbjct: 114 VLFAPEEVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIV 173 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEV 233 PW +ELI + R Y + + D ++ S+ + + ++ E Sbjct: 174 LPWTEELIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRESVNLVYPSESDNLSDLKEE 233 Query: 234 LERNFERD--RQLTY--TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 L N ER+ R+ Y T GPH+ D D + S+GQ + + A + AQ L Sbjct: 234 LRSNLEREQSRETKYGMTMVGPHRDDPVFMVDDRVLGLYGSQGQQRSFILAFKTAQIIDL 293 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E+G L L+DD SELD +R+ L Q QVF++ + + + F Sbjct: 294 EKETGYTPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQNAGFNRMRTFR 353 Query: 350 VEKGKITD 357 V +GK+ D Sbjct: 354 VREGKLCD 361 >UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax=Bacteroidetes RepID=RECF_FLAJ1 Length = 359 Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 178/371 (47%), Gaps = 33/371 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +++N A N VG NG GKT+VL+AIY L +G+++ + + Sbjct: 1 MHLNKLSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKV-RIDGTDGHKVAELAHLMPMQLITP 119 I+H +E FV+ L+ +R I + K+G KV + +G K ++ +P+ +I+P Sbjct: 61 IKHGEEFFVIDAELEKNDRTEQI-VCSLKKGQKKVLKRNGKAYDKFSDHIGFIPLVIISP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNA-----ALRQVTRYEQL 174 L+ G + RR F+D + + ++++ QRNA AL + L Sbjct: 120 ADRDLIVEGSETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDNDTL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK-------- 226 ++++L + I R E+ ++F+P F++ G E+ Sbjct: 180 SIYNEQLNEFGKSIFEKRKEF-----------LEEFIPIFNVHHQAITGSEESVQLVYES 228 Query: 227 ---ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E + +L+ N +DR L YT+ G HK DL D P++ S+GQ K + AL+L Sbjct: 229 HLFEKDLLTLLQENINKDRALHYTSSGIHKDDLSFEIDSHPIKKFGSQGQQKSFLIALKL 288 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEH---VID 339 AQ EFL ++SG + + L DD +LD+ R + + + T Q+F+S E ++ Sbjct: 289 AQFEFLKKQSGVKPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDTHPERTEAIVK 348 Query: 340 MSDENSKMFTV 350 + + K+F + Sbjct: 349 STHQTYKIFNL 359 >UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax=root RepID=RECF_BACV8 Length = 371 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/378 (26%), Positives = 188/378 (49%), Gaps = 34/378 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R+ I +++N+E A+L SP N +G NG GKT++L+A+Y L ++ + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 61 IRHEQEAFVLHGRL---QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 IRHE E FV+ G QGE E GL + ++ + + + + +++++ +P+ ++ Sbjct: 61 IRHEGEFFVIQGFYETDQGEPEEVYCGLKRRQK--KQFKRNKKEYNRLSDHIGFIPLVMV 118 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LR 175 +P L+ GG RR F+D + + A + L QRNA L+ +++ + Sbjct: 119 SPADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEELML 178 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA---- 231 W++ + E + R+E+ A +F+P F +S+ +++ A Sbjct: 179 VWEEMMASAGEVVFKKRSEFIA-----------EFIPTFQSFYSYISQDKEKVNLAYESH 227 Query: 232 -------EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 ++++ + RDR + Y+ G HK DL ++ P++ S+GQ K + AL+LA Sbjct: 228 AMSGGLLDIIKESRRRDRVMGYSLKGVHKDDLIMQLGDFPIKREGSQGQNKTYLIALKLA 287 Query: 285 QGEFLTRESGRRC-LYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH---VID 339 Q +FL + G L L+DD +LD R + + + Q+F++ + +H ++ Sbjct: 288 QFDFLKKTGGNTTPLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNRDHLDKILK 347 Query: 340 MSDENSKMFTVEKGKITD 357 + K+F VE G++T+ Sbjct: 348 KIEREYKVFAVEDGEVTE 365 >UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=Clostridium RepID=RECF_CLOD6 Length = 371 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 172/368 (46%), Gaps = 18/368 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN + L + N LVG NG GKT+++E+IY L G++FR+ + + Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLT--KDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R E + G + + I L KDK+G +RI+ K+ EL + + + + Sbjct: 61 VRFNSENLYIGGSFSKYNKYSLIELIIGKDKKG---IRINKVPLQKIQELLGNLNVVIFS 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPW 177 PE L+ GPK RRAF+D P ++ +N + L QR+ L+ + E L + Sbjct: 118 PEDLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLDVY 177 Query: 178 DKELIPLAEQISTWRAEY---SAGIAADMADTCKQFLPEFSLTFSFQRGWEKE----TEY 230 D L I R ++ A I+ +M + S+ + Q E T Y Sbjct: 178 DDTLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDTVY 237 Query: 231 AEVLER---NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 + L + N D + T +G HK DL I + S+GQ + +L+L++ E Sbjct: 238 NKFLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARLFGSQGQQRTASISLKLSEIE 297 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 + E + ++DD SELD+ R+ LL + L + Q+F+++ H ++N + Sbjct: 298 LIKNEVEEYPVLILDDVFSELDEARQKLLVNNL--SNVQMFITSAEVSHKKIFDEKNVTI 355 Query: 348 FTVEKGKI 355 F +E G + Sbjct: 356 FNIENGDV 363 >UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=RECF_ALKOO Length = 365 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 178/367 (48%), Gaps = 15/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + ++RN E +L P N +G N GKT+++E+IY G++FR+ + Sbjct: 1 MIVEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ +H +++ + I + + + ++++ K+ EL + + L +PE Sbjct: 61 INMNKKQAYIHVKVKKVHSDVHIEVRLNSERKKDLKVNQIPLVKMGELLGNLNVVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L+ GP RR F+D F+ S ++L+ RN L+ E + WD+ Sbjct: 121 DLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIEVWDE 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWE-KETEYAEV--- 233 +L + +R + I+ +A + + E +L ++ + KE + +V Sbjct: 181 QLAAAGAWLIVYRRNFIKKISI-LAKLMHRKITESIENLEVIYEPNVKVKENDEVDVIKE 239 Query: 234 -----LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L+ NF D+Q T GPH+ D+ ++ +G V+ S+GQ + + +L+LA+ E Sbjct: 240 KILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVKTYGSQGQQRTAVLSLKLAELEL 299 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + E G + L+DD SELD +R+ L LK+ Q+ F++ E + D+ E+ +F Sbjct: 300 VKGEVGEYPILLLDDVMSELDSKRQHYLIHNLKSVQT--FITTTMMETLKDLKPEDRAVF 357 Query: 349 TVEKGKI 355 V KG+I Sbjct: 358 YVNKGQI 364 >UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA14_9CLOT Length = 376 Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/373 (25%), Positives = 176/373 (47%), Gaps = 22/373 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T +FRN++ L PG N + G N GKT+++EAI+ ++FR + R+ Sbjct: 1 MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFRGNKDSRM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ L ERE + ++ + ++ + ++ LA + +P Sbjct: 61 IWFEEQFATLSLSFDDGEREQHAQIRLGEK--NSCTLNRVEQKSLSALAGAFQCVVFSPT 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP---- 176 ++ GGP RR FLD P + +R+L QRN+ L+++ RY LR Sbjct: 119 HLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLRDTIEV 178 Query: 177 WDKELIPLAEQISTWRAEYS-----------AGIAADMADTCKQFLPE-FSLTFSFQRGW 224 WD++L L ++ R +Y AGI++D + F Sbjct: 179 WDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAFDSLLDHAYTQ 238 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 +K Y LE + ++D + +T G H+ DL + +G V+ S+GQ + + AL+LA Sbjct: 239 DKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVKTYGSQGQQRSTILALKLA 298 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + L +G + L+DD SELD R+ L + ++ ++QVF++ + + + + ++ Sbjct: 299 EARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIR--ENQVFITCCDSSNTLRL--QS 354 Query: 345 SKMFTVEKGKITD 357 ++F ++ GK+ D Sbjct: 355 GRVFHIDGGKLLD 367 >UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=Clostridia RepID=RECF_HALOH Length = 375 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 185/372 (49%), Gaps = 18/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ ++DFRN+ + L N VG NG GKT+ LEA+Y +G + R+ + Sbjct: 1 MYIDRIYLKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ V+ L + + I L +K+ K+ I+ +V+EL + + L +PE Sbjct: 61 IRWNQDRAVVQLYLVKRDEKLKISLEINKKV-KKLEINDVPQERVSELLGNLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ GP +RR FLD +P + +L QRN L+++ + L Sbjct: 120 DLKLVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDTTLLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQ-----RGWEKETE 229 WD++L+ + +I R E + + +Q ++T S++ R EKE E Sbjct: 180 VWDEQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEEKELE 239 Query: 230 YAEVLERN---FERDRQLT--YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 +++ RN R+ ++T YT GP + DL+I +G + S+GQ + +L+LA Sbjct: 240 EIKIIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIRKYGSQGQQRTAALSLKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EF+ E G + L+DD SELD++RR L + A + Q F++A ++ +++ + Sbjct: 300 ELEFMKSEQGEYPVLLLDDVFSELDNKRRHRLID-IMAHRVQTFITATDFFNLNEINTPS 358 Query: 345 SKMFTVEKGKIT 356 K+F V G IT Sbjct: 359 IKVFKVRNGLIT 370 >UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=RECF_PARUW Length = 359 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 106/365 (29%), Positives = 172/365 (47%), Gaps = 25/365 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L L ++ FRN E A L SP FN + G N GKT++LEAI+ L GR+FR+ + Sbjct: 1 MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60 Query: 61 IRHEQEAFVLHGRL--QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+ + E+F L + G E+ G D K+ + T ++ L L+P +IT Sbjct: 61 IQQQFESFFLEAQFYKHGIEQTLKFGF---HTTDRKIIYNSTPLATLSNLLGLIPGVIIT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P+ L+ G P+ RR FLD +P + + R LKQRN L+ + + + W+ Sbjct: 118 PDDVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLK-MKQQISIDSWE 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-----LTFSFQRGWEKETEYAEV 233 +E+ A + R + + + +++ S LT ++ E+ Sbjct: 177 QEMTHSAAYLIQQRYQ----TITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEI 232 Query: 234 -------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 L +N +R+ Q+ YT GPHK DL + G + S GQ + + AL A+ Sbjct: 233 KKLLVKQLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEW 292 Query: 287 EFL-TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 L R G L++IDD LD R+ L +L++ QVF++ + +D D + Sbjct: 293 NRLHQRGDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSV-GQVFLTTTDPK-FLDHIDADK 350 Query: 346 KMFTV 350 K+FT+ Sbjct: 351 KIFTL 355 >UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=Selenomonas RepID=C4V1P7_9FIRM Length = 377 Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 107/374 (28%), Positives = 167/374 (44%), Gaps = 20/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R +R+ ET LA PG +GAN GKT+++EA+Y GR+ R+ + Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + + + + A+ T + ++ G + + +L ++PM L +PE Sbjct: 61 IRVGADGAHIALSFRRHDVPGALSFTFARGARRRIEYAG-ESLRQRDLVGILPMVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 L+ G P RR +LD P ++ R+LKQRNA L+ + + L P Sbjct: 120 DLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAPDDLLP 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-------QRGWEKE-T 228 WD +L A I T R A + A A LT + + G + + T Sbjct: 180 WDAQLAKSAAYIVTRRTSAVAQLGALSARVQSVLAAGEELTLVYDIAGAAPESGAKDDMT 239 Query: 229 E-----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E Y ++L RD T GPH DL +R G + S+GQ + AL+L Sbjct: 240 EQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLRSFGSQGQQRTGALALKL 299 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A+ +L G + L+DD SELD +RR L ++ Q F++A A + ++ Sbjct: 300 AELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTFITATDAAYF--PAER 357 Query: 344 NSKMFTVEKGKITD 357 VE GK+ D Sbjct: 358 MGTYRYVEAGKVRD 371 >UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS07_9BACT Length = 351 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 11/329 (3%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRS--LQIGRVIRH 63 L ++ FR+ + + LSP + G NGSGKT++LEA+Y L G +FR+ ++G++ Sbjct: 5 LRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFRASDQELGQI--- 61 Query: 64 EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFT 123 + + L RL E + + + G +DG ++ H +P+ L P Sbjct: 62 GMDWWRLDARLVANESRSILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPGDLR 120 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDKELI 182 LL+G P RR F+D EP + S R+LKQRN L+ + + ++L WD L Sbjct: 121 LLHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVALS 180 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEK-ETEYAEVLERNF 238 +I R +YSA + A + + + SL +SFQ G E + L + Sbjct: 181 EYGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYSFQEGAESVQQAMVSALHAHH 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 RD+ L YT GPH+ DL + SRG+ + ++ AL+ + E L + L Sbjct: 241 VRDKALGYTTVGPHRHDLIFSMNDVEATSIASRGETRSIVLALKFIEVEMLRVYRDQPPL 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQV 327 L+DD SELD RR L +TQ+ + Sbjct: 301 LLLDDVFSELDSTRRMALVEVGSSTQTVI 329 >UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=Prevotella RepID=D1P8T5_9BACT Length = 405 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/382 (27%), Positives = 180/382 (47%), Gaps = 46/382 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR-AFRSLQIGR 59 M L + I +F+NI++A+L LSP N L+G NG GKT+ L+AIY L R A+ S+ + Sbjct: 41 MILKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSID-SQ 99 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLIT 118 +I H++ F+L G ++ E K+G K + + + ++++ L+P+ L++ Sbjct: 100 IITHDEPFFMLEGNYDNDKGEIENVYCGMKRGTKKHFKRNKKEYKRLSQHIGLIPLILVS 159 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------- 170 P +L+ GG + RR +D + + A SN + L+QRNA L+ Sbjct: 160 PSDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDITILEL 219 Query: 171 ------------YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF 218 Y++ + + EL+PL +QI + + C Sbjct: 220 WEQQMASNGELLYQKRQAFVDELVPLFQQIYQQISGDKEQVRLHYVSHC----------- 268 Query: 219 SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLM 278 QRG +V++R+ +DR + Y+ HG H+ DL P++ S+GQ K + Sbjct: 269 --QRG-----PLLDVIQRDRFKDRAVGYSLHGVHRDDLEFLLGDYPMKREGSQGQNKTFV 321 Query: 279 CALRLAQGEFLTRESGRRC-LYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH 336 AL+LAQ FL R S L L+DD +LD +R + + Q+F++ + +H Sbjct: 322 IALKLAQFTFLQRTSSNTLPLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFITDTNRDH 381 Query: 337 ---VIDMSDENSKMFTVEKGKI 355 ++ + +F VE G+I Sbjct: 382 LDKILHNMQGDHTIFYVENGEI 403 >UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RECF_NATTJ Length = 386 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 174/377 (46%), Gaps = 26/377 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L +++FRN L GAN GKT++LEAIY L G++ R+ + + Sbjct: 1 MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E F L G L+ E+ + + + + Q + ++++ M + + + Sbjct: 61 IRWETSGFYLKGELEKEQAQYTLEIITNYQNGKNKNLKVNNLSQTNTRNFLKTMNVVIFS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----QVTRYEQL 174 PE L+ G P RR F+D +P + N + L+QRN L+ + T + L Sbjct: 121 PEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLLKTYQDKNTLAQHL 180 Query: 175 RPWDKELIPLAEQISTWRAEY-------SAGIAADMADTCKQFLPEFSLTFSFQ------ 221 PW+++L+ +I R E + I + + + ++S + F+ Sbjct: 181 PPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCKFRE 240 Query: 222 --RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 G + ++ L N + D + T+ GPH+ DL + + S+GQ + + Sbjct: 241 QLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKDARQFGSQGQQRTTVL 300 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV-- 337 AL++A+ E + E G + L+DD SELDD R+ L + L + Q FV++ S E Sbjct: 301 ALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLN-LTEGRVQTFVTSTSMEDFNG 359 Query: 338 -IDMSDENSKMFTVEKG 353 +D+ + S++F ++ G Sbjct: 360 DVDIKAK-SQVFRIDNG 375 >UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL1_HALO1 Length = 382 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/382 (28%), Positives = 174/382 (45%), Gaps = 30/382 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + RN+ L P FN G NG GKT++LE IY +G R+FR+ ++ + Sbjct: 1 MLVRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ + R+Q E L + ++G +VR+DG +++ + L PE Sbjct: 61 IAFERDRAYIGARIQRGGLERVYELVQRQRG-RQVRLDGKAVRPISKYFGDFNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------- 173 + G P RR FLD F+ P + +++K RNA LR++ ++ Sbjct: 120 DLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLRQAGD 179 Query: 174 -LRPWDKELIPLAEQISTWRAEY----------------SAGIAADMADTCKQFLPEFSL 216 L +D++L L + +R + G+A D++ + + S Sbjct: 180 FLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQSITHTGLAVDVSYASAVDITQASD 239 Query: 217 TFSFQRGWEKETEY--AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 + G E+ T A + ER RD ++ GPH+ DL DG P S+GQL Sbjct: 240 SAESGPGSEQLTRALAAAIAERR-PRDLARGSSSVGPHRDDLVFELDGHPAAAFASQGQL 298 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + L+ A + A+ + L G + L+DD +SELD R G L LKA + Q F++ Sbjct: 299 RALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFITTTHP 358 Query: 335 EHVIDMSDENSKMFTVEKGKIT 356 HV+ S+ + VE G +T Sbjct: 359 RHVLLSSERED--YRVEGGLVT 378 >UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax=Streptococcaceae RepID=RECF_STREM Length = 369 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/364 (26%), Positives = 173/364 (47%), Gaps = 12/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN + A A SPG N +G N GKT+ LEAIY L R+ R+ + Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ + G L+ + + +G +I+ K+++ M + L PE Sbjct: 61 IYFDERDCSISGTLERLSGRVQLEILLSDKG-RITKINTLKQAKLSDYIGAMMVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWD 178 L+ G P RR F+D +P + + S+ +LKQRNA L+ V + + L D Sbjct: 120 DLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFLSVLD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAAD-------MADTCKQFLPEFSLTFSFQRGWEKETEYA 231 ++L+ ++ R + +A + +++ ++ + + SF+ E ++ Sbjct: 180 EQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQQEIYQQFM 239 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 + L+ +RD T GPH+ DL +G + S+GQ + L+ +L++A+ + + Sbjct: 240 DQLKTTHQRDFLRKNTGVGPHRDDLIFYINGMNA-NFASQGQHRSLILSLKMAEVSLMKQ 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 +G + L+DD SELD+ R+ L +K Q F++ S +H+ + + S +F V Sbjct: 299 LTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLKHLSQLPKDIS-LFKVN 357 Query: 352 KGKI 355 KG I Sbjct: 358 KGTI 361 >UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH5_9FIRM Length = 363 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/369 (26%), Positives = 175/369 (47%), Gaps = 21/369 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPG-FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M++ +L FRN ET + P +FL G N GKT+++EAIY L H R+FR+ Q+ Sbjct: 1 MNVEKLTCFHFRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDS 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I H F + ++ R+ + + D Q R K ++ + L P Sbjct: 61 MIMHGCNEFCVQAIVESNHRKEELKVIVDHQKKHLFRFQNP-VKKYSDFIGIENAILFCP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWD 178 + +L PK RR F+D + + S+ ++LLKQRN AL+Q E L + + Sbjct: 120 DDLSLFTSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLVQIYL 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS----------LTFSFQRGWEKET 228 ++I + I R E+ + + ++ P FS +TF + ++ Sbjct: 180 DQMIEVQSVIIKQRNEF----LNSLMNKARELYPFFSNEKEEIGAKYMTF-IPIDPDMKS 234 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 E ++ FE++++ T G H+ D+ + PV + S+GQ + + AL+L + Sbjct: 235 HMKEAYDKVFEKEKRYHQTLIGIHRDDILFELNENPVCEVASQGQKRSFVLALKLGLAQI 294 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + +SG+ + L+DD SELDD R+ L +L Q+F++ + E + + + + Sbjct: 295 IYEKSGQYPILLLDDVFSELDDFRKRQLIEKL-PRDMQIFIT--TTERLNINWNREVRFY 351 Query: 349 TVEKGKITD 357 +EKG+I + Sbjct: 352 DIEKGRIKE 360 >UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RECF_MOOTA Length = 370 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 173/360 (48%), Gaps = 11/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +SL +L + +FR+ + PG N + G N +GKT++LEAI L R+FR Q ++ Sbjct: 4 LSLQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQL 63 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + +F + G GE+ E I +Q + ++ I+G + +++ EL + P+ Sbjct: 64 LTWGASSFQVRGLCHSNGEKIELVINY---QQHNKRLTING-NRNRLIELLGIFPVIYFG 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQL 174 P+ LL GGP YRR FLD + + + +R+L QRN LR + + +L Sbjct: 120 PDDLHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEGEL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 PWD +L+ + I R+ + +A +A T + L ++ G + E+AE L Sbjct: 180 EPWDIQLLATGKAICEKRSCFLQSLAPRVAATYRDMAGGEELALIYRPGVASQEEWAERL 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + ER+ Q T GPH+ D DG S+GQ + ++ AL+LA+ + Sbjct: 240 KVGREREVQAGMTLWGPHRDDFTFTLDGHEARYFASQGQQRAIVLALKLAEARYYRELLH 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD+ +G L L A Q F++ + + S ++ + +G+ Sbjct: 300 VMPVLLLDDVFSELDEAHQGALLE-LLAGADQAFLTTTEVGLLPARLIQRSHLWELARGR 358 >UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax=Leptospira RepID=RECF_LEPBJ Length = 365 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/362 (27%), Positives = 167/362 (46%), Gaps = 8/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +++FR+ E L + F VG NG GKT++LEAI L ++FR + + Sbjct: 1 MFLKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNL 60 Query: 61 IRHEQEAFVLHGRLQGEERETA--IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E + L G+++G+++E+ +G T K++ + + K +L L+T Sbjct: 61 IRWGSENYFLRGKIKGDQKESVLEVGFTAKPTVKRKLKFNQEEVKKRTDLIGKFITVLLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPW 177 P ++ GGP RR F+D +P + ++LK RNA L+ ++ L W Sbjct: 121 PMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLSIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVLER 236 D++LI I R E G+ + + + L + + + E+ E L R Sbjct: 181 DRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVKDKDEFVEKLGR 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +D +L YT+ G H+ DL I AD + + S+GQ + + AL+ A + Sbjct: 241 NLGKDLRLGYTSVGIHRDDLFIGADKRDITEFGSQGQKRSTVIALKAATFNYYRNVLDTM 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS---DENSKMFTVEKG 353 + LIDD ELD +RR L Q F + E + D + ++F +++G Sbjct: 301 PVLLIDDVIRELDVKRREYFVD-LVINAGQAFFTTTDLEGIQDYVGKLKDQKQIFLIQQG 359 Query: 354 KI 355 I Sbjct: 360 NI 361 >UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9_FUSNN Length = 369 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/377 (26%), Positives = 172/377 (45%), Gaps = 34/377 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + +FRN+E + LS N G N GKTS+LEAIY G +F++ + + Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGL-------TKDKQGDSKVRIDGTDGH-KVAELAHLM 112 I++ + F+ Q I + K + +K RI TD + K+ +A++ Sbjct: 61 IKYNFDEFISSISYQDYIANNKISVRFKNIAGAKKEFFFNKKRISQTDFYGKINIIAYI- 119 Query: 113 PMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY- 171 PE L+NG PK+RR F D + + T N +LLK RN L++ R Sbjct: 120 ------PEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNS 173 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMA-DTCKQFLPEFSLTFSFQRGWEK---- 226 E+ ++KE I A I R EY ++ + K F L ++ +K Sbjct: 174 EEFAIYEKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKV 233 Query: 227 ------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 E+ E+ ++ ++ D+ ++ GPHK D + +G + + S+G+ K ++ + Sbjct: 234 TIEMIQESLKREISQKKYQEDK-YKFSLVGPHKDDYKFLLNGHEAKISASQGEKKSIIFS 292 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 L+L++ E + + + +IDD S D++RR + QV +S+ D Sbjct: 293 LKLSEIEIIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISS------TDK 346 Query: 341 SDENSKMFTVEKGKITD 357 D +K F VEKG I D Sbjct: 347 LDIEAKNFYVEKGIIKD 363 >UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax=Chlamydiaceae RepID=RECF_CHLFF Length = 367 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 98/364 (26%), Positives = 168/364 (46%), Gaps = 13/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L +++FRN + A ++LSP N++ G N GKT++LEA+Y L GR+FR+ + Sbjct: 1 MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I F L + + + + DK G K+ D + +++L ++P+ L + + Sbjct: 61 ISFGSAYFFLEMTCEKDGFSHKLSIYVDKHGK-KILSDQSPIKTLSQLIGMVPIVLFSSK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L++G P RR FL+ +P + S R L QRN+ L+ + L WD++ Sbjct: 120 DRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLK-TKQISTLSVWDEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----FSLTFSFQRGWEKETEYAEV-- 233 L L ++ R + + L E F + Q KE+ E+ Sbjct: 179 LATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELRK 238 Query: 234 -LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + RD +L T+ GPH+ D + + PV S GQ L+ LRLA+ ++ Sbjct: 239 QLTSSLHRDLELGSTSVGPHREDFTLMINDLPVSQFSSEGQKHSLLAILRLAECLYIKNI 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L+ +DD S LD+ R L L T Q +++ H +NS++F V + Sbjct: 299 HNVCPLFCMDDIHSGLDNHRISQLLD-LAPTLGQTLMTSTHLPH--QTLSKNSRIFLVNQ 355 Query: 353 GKIT 356 +++ Sbjct: 356 AQVS 359 >UniRef50_UPI00016B2627 DNA replication and repair protein RecF n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2627 Length = 347 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 91/345 (26%), Positives = 165/345 (47%), Gaps = 8/345 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R+ R+ E ++ ++G NGSGKT++LEA+Y G +FR + Sbjct: 1 MDITHLEVRNLRSHELESRDITERVTVIIGKNGSGKTTLLEALYIALRGTSFRGSD-NDI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++H+++ + +H +R A + + K+ ID ++ + P+ L P+ Sbjct: 60 LQHDKDWWRIHVSTTNGDRSIAYDNSGENSPRKKILIDERKFQRMPSNKKI-PVVLFEPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L+G P RR F+D H P + T +R LKQRN L+Q + WD Sbjct: 119 DLRVLHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSNIFAWDM 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLER 236 + +I + R + I ++ T + L +S + + A +L Sbjct: 179 AMAQYGAEIISQRVMIISKINQELTKTYQSIAGNNDTVDLHYSHTLIDNIQQKLANMLYA 238 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 +FERD+ L +T+ GPH+ D+ +G SRG+++ ++ AL+ + + +G Sbjct: 239 SFERDKILGFTSVGPHRHDVMFEFNGQIAAKVASRGEVRSIILALKFIEVDITQEATGLS 298 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 + L+DD +ELD+ R+ LA K +Q+F+++ +A ID S Sbjct: 299 PVILLDDVFAELDETRQRRLAE--KCRDNQMFITSTNAYTGIDTS 341 >UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=Anaeromyxobacter RepID=RECF_ANASK Length = 372 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 168/372 (45%), Gaps = 20/372 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++DFRN+ LA SP L+G NG GKT++LEAIY L + R++++ + Sbjct: 1 MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGDSKVRIDGT---DGHKVAELAHLMPMQ 115 +R + + G +G R A+ + G +DG G ++ + + Sbjct: 61 VRFGADQGAVAGDFEGPGGVRRVAVQVAA---GGRTATLDGKALGSGARLDDYFEGLASV 117 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 +P+ L+ GP RR FLD F+ P R L+ RNAALR E Sbjct: 118 CFSPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALR-AGPAEVEA 176 Query: 176 PWDKELIPLAEQISTWRAEYSAGIA----ADMADTCKQFLPEFSLTFSFQRGWEKETEYA 231 + + L+ ++ R E A +A A A+ PE L + G + A Sbjct: 177 SFREPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEA 236 Query: 232 EV-------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 EV LE ERDR+ +T+ GPH DL + G S+GQ + L+ AL++A Sbjct: 237 EVAARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARLYGSQGQQRALVLALKIA 296 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E L GR L L+DD +SELD + L L A +Q F+++ + + + Sbjct: 297 EIENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGPD 356 Query: 345 SKMFTVEKGKIT 356 + F V G ++ Sbjct: 357 TAFFEVRSGVVS 368 >UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXT0_ALIAD Length = 371 Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 30/355 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ + DFRN A++ LSPG N LVG NG GKT+ LEA+ + G++ R+ + + Sbjct: 1 MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 61 IRHEQEA--FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR EQ+ +L + +R + L + + + +G ++ E + + L Sbjct: 61 IRWEQDRARILLEASTRYGDRRLTLELGPEGR---RAFANGVQVGRMTEFVGQVQVVLFA 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE L+ G P+ RR FLD EP + S R L QRN L+ L P D Sbjct: 118 PEDLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAP----LSPDD 173 Query: 179 KELIPLAEQISTWRAE--------------YSAGIAADMADTCKQFLPEFSLTFS-FQRG 223 L QI+ A Y+A I +D+A ++F + + S + G Sbjct: 174 DVLATFDRQIAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVEEG 233 Query: 224 WEKETEYAEVLERNFERDR----QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 E E A+ ++R E++R + T+ GPH+ D+ + DG V S+GQ + + Sbjct: 234 MSVE-EMADTVQRALEKNRAQDLRFGTTSAGPHRDDILLFLDGREVHTAASQGQQRTIAL 292 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDER-RGLLASRLKATQSQVFVSAIS 333 +LRLA+ +F+ E G + L+DD SELDD R R L+ + Q+ + ++++ Sbjct: 293 SLRLAEIDFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGMSRKVQTVITTTSLN 347 >UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP63_9FIRM Length = 355 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 20/336 (5%) Query: 10 DFRNIETADLALSPGFNF--LVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR--HEQ 65 + RN E D ++ P N L G NG+GKT+++E+IY G++FR+ +IR E+ Sbjct: 10 EIRNFE--DFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEELIRLNKEE 67 Query: 66 EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 +L ++G E I L+++K K+ I+ T K EL + L TP+ L+ Sbjct: 68 GTILLDFSVRGVTHEIKIKLSRNK--GKKILINET-ATKKRELMGMFRTVLFTPDDLQLI 124 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPWDKELI 182 G P+ RR F+D P ++ R ++QRNAA ++ + + WD ++ Sbjct: 125 KGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTADVDVWDMQIA 184 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKETE-----YAEVLE 235 A I R E + G ++ + + L + S+ +++ +E Y E L Sbjct: 185 KGASYIVKKRME-TIGKINEIVSSMESLLTDEKESILIKYRKSGNQEERFDEEWYLEKLA 243 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + E D + +T+ GPH+ DL +G + S+GQ + + +++LA+ EF+ +E+G Sbjct: 244 LSREEDSRFCHTSIGPHRDDLIFLMNGNDISSYGSQGQQRTAILSVKLAELEFVKKETGE 303 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 L L+DD SELD ERR L S L + Q ++ Sbjct: 304 YPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITT 339 >UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQA9_9FIRM Length = 365 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 106/372 (28%), Positives = 183/372 (49%), Gaps = 24/372 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R++RN +LAL PG N +G N GKT+V+EA+Y G + R+ + Sbjct: 1 MYVRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTEL 60 Query: 61 IRHE--QEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGH--KVAELAHLMPMQL 116 IR + + +L +G ++ K+ R +GH ++ EL + L Sbjct: 61 IRWDAGEGCIILDFDRRGVMNHLEFQFSRAKR-----RRILLNGHPIRLKELIGSINTVL 115 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YE 172 +PE L+ G P RR FLD P ++ R++ QRN+ L+++ Sbjct: 116 FSPEDLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADKS 175 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP--EFSLTFSFQ-RGWEKETE 229 L WD++LI AE+I R E + +A+ ++ + + +LT S++ G E T+ Sbjct: 176 MLALWDEQLIASAEKIIRKRIEAVRKLNM-LANLMQRRISSDQENLTVSYEVHGGEDMTK 234 Query: 230 -----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 Y E+L ++ E D T++GPH DL + +G + S+GQ + + +L+LA Sbjct: 235 GFASWYNEMLRKSQETDILRGSTSYGPHHDDLVLTVNGINLRTFGSQGQQRTGVLSLKLA 294 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EFL E+G + L+DD SELD +RR L ++ + Q ++A A + ++ Sbjct: 295 ELEFLRSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYF--PAEGM 352 Query: 345 SKMFTVEKGKIT 356 + + V+ G+IT Sbjct: 353 GRYYHVQSGQIT 364 >UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax=Thermoanaerobacterales RepID=RECF_THEPX Length = 362 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 154/340 (45%), Gaps = 19/340 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN++ + G N G N GK+++LE+I L GR+FR + + Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ F + + E + I K + ++++G +EL + + +PE Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ---LRPW 177 ++ GP +RR +LD E + ++L RN L+ + + L + Sbjct: 121 DLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKSILEIF 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-----LTFSFQRGWEKETE--- 229 D +L+ +I R Y + ++ K+FL E S + + G + ++ Sbjct: 181 DDQLVEYGAKIIVMRQNYLKNVEINI----KKFLLEISNETAEIVYLNSVGLKDASDEEI 236 Query: 230 ----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 E L +N + D + T GPH+ D +I +G S+GQ + L+L++ Sbjct: 237 VKKRLKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSE 296 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQS 325 E L +E+ + + L+DD SELD+ R+ + RLK Q+ Sbjct: 297 FEILKKETSEKPVLLLDDVMSELDENRKKYVLERLKGFQT 336 >UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS9_SEBTE Length = 362 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/366 (23%), Positives = 172/366 (46%), Gaps = 19/366 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +FR +E + P FN + G NG GKTS++EA+Y L G++FR+ ++ + Sbjct: 1 MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +++ +++G + + I + D D K + K + ++ + PE Sbjct: 61 TSYDKIRTIVYGSFESKLSGKTIAI--DFNNDKKEYYVDKNKTKYIDYVGILNVISFIPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 ++ G P RR F ++ + + + +++LK RN +++ T E +++ Sbjct: 119 DIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKELYHIYNE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTF-SFQRGWEKET------E 229 + I +I R EY I+ + ++ E L + SF +K T + Sbjct: 179 KFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMTLEEIKEK 238 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + E + +R+++ YT GP K D +G + S+G+ K ++ +L++A+ + L Sbjct: 239 FREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAKAFSSQGEKKSIIFSLKIAEIDML 298 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E ++LIDD +S D+ R+ + + K Q F++ S E + D K Sbjct: 299 IKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFIT--STEKL----DIEGKKIY 352 Query: 350 VEKGKI 355 ++KG+I Sbjct: 353 IDKGRI 358 >UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=Geobacter RepID=RECF_GEOMG Length = 365 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/378 (28%), Positives = 174/378 (46%), Gaps = 37/378 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T++ I FRNI A++ FN L GANG GKTSVLEAIY LG ++FR + + Sbjct: 1 MFVTKIQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + +L G + G RE A+ L K+ + K R+D ++A+ + + + Sbjct: 61 VSWNTPHALLRGWAERDGVGREIALYLGKEGR---KARVDQKPVTRLADFFGNVNAVVFS 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE + GP RR +LD F + G+ RLLKQRNA L++ +R E L W Sbjct: 118 PEEIAMARSGPDLRRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSR-EGLDIWT 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA------- 231 +L ++ R Y A++ ++F E + G E+E A Sbjct: 177 GQLAEAGTRLMVKRMGY----LAEIEPLVQRFYREIA-------GGEEEAGLAYRPHLTT 225 Query: 232 -EVLERNFERDRQLTYTAH------------GPHKADLRIRADGAPVEDTLSRGQLKLLM 278 +++ R + AH GPH+ D+ +G + S+GQ + + Sbjct: 226 PDLVSREGTDALLALFGAHEAEELRRGTTVVGPHRDDVDFVLNGRVIRTHGSQGQQRSFV 285 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 AL++A+ E+L R + + L+DD +SELD +R L + L+ + QVF++ + Sbjct: 286 LALKMAEIEYLERLNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVSTLR 345 Query: 339 DMSDENSKMFTVEKGKIT 356 F V +G +T Sbjct: 346 LAGIATHASFHVSRGTVT 363 >UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax=Bacillales RepID=RECF_STAHJ Length = 371 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 170/375 (45%), Gaps = 26/375 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + ++RN E L P N L+G N GKT++LE+IYTL ++ R+ + Sbjct: 1 MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E + G L + + K+G +V+++ + ++ + + + L PE Sbjct: 61 IRFNSEYAKIEGVLNYRHGTMPLTMFITKKG-KQVKVNHLEQSRLTQYVGHLNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 ++ G P+ RR F+D + + +R+LKQ+N L+Q+ ++ L Sbjct: 120 DLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDTTMLE 179 Query: 176 PWDKELIPLAEQISTWRAEY-----------SAGIAADMADTCKQFLPEFSLTFSFQRG- 223 +++ A ++ R + AGI + +LP L+ +G Sbjct: 180 VLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLS-DMSKGE 238 Query: 224 ---WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 W+ E +L N +R+ GPH+ DL + + S+GQ + + Sbjct: 239 QTLWD---EVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMDAQTYGSQGQQRTTALS 295 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 ++LA+ E + E G + L+DD SELDD R+ L S ++ + Q FV+ S + + Sbjct: 296 IKLAEIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHE 354 Query: 341 SDENSKMFTVEKGKI 355 N+K++ + +G+I Sbjct: 355 IMNNAKLYRINQGEI 369 >UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LFM2_9BACT Length = 342 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 110/355 (30%), Positives = 173/355 (48%), Gaps = 43/355 (12%) Query: 26 NFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQ---GEERETA 82 N VG NG GKT++L+AIY L ++ RS ++H ++AF+L G G E + A Sbjct: 3 NCFVGDNGMGKTNLLDAIYYLSFCKSARSSTDVTNVKHGEQAFMLQGLYDDDTGGEDKIA 62 Query: 83 IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFH 142 IG + ++ ++R +G D + AE +P+ +I+P L+ GG RR F+D Sbjct: 63 IGYHEGRR--KQLRRNGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFMDTVIAQ 120 Query: 143 NEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAAD 202 + + A ++ L+QRNA L+ KE P A+ IS S AA Sbjct: 121 YDATYLEALMRYEKTLRQRNALLK------------KEEEPEADVISIIEDIMSRD-AAI 167 Query: 203 MADTCKQFLPEFSLTFSFQRGWEKETEY------------------AEVLERNFERDRQL 244 + K F+ F+ +F +G +E Y +LE+ R+R + Sbjct: 168 IYQGRKLFVETFT---AFFQGIYRELCYDPEQVNIVYESHGNRGELKPMLEQYRSRERLV 224 Query: 245 TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL-TRESGRRCLYLIDD 303 YT HG HK DL + +G PV+ S+GQ K AL+LAQ +L T+ S R+ L L+DD Sbjct: 225 GYTLHGIHKDDLLLYINGYPVKQEASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDD 284 Query: 304 FASELDDER-RGLLASRLKATQSQVFVSAISAEHVIDM--SDENSKMFTVEKGKI 355 +LD R ++ +A Q+F++ S E ++ + N K+FTV+ G+I Sbjct: 285 IFDKLDAGRVEHIIRYAAEAQFGQIFITDTSKERLLPILQLQRNYKLFTVKDGEI 339 >UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=Sphingobacterium spiritivorum RepID=C5PLJ5_9SPHI Length = 371 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 101/373 (27%), Positives = 176/373 (47%), Gaps = 22/373 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N + L P N G NG+GKT++L+AI+ L +++ + + Sbjct: 4 MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 63 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + F++ G + + R I + K + + + D ++A+ P+ +I+P Sbjct: 64 IKQGMDWFMVQGSFENDTRTDVISCSLKKNQKKQFKKNKKDYPRLADHIGQFPLVMISPN 123 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G + RR F+D + + +++ QRN L+Q QL Sbjct: 124 DSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQARESGQLD----- 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF------QRGWEKET-----E 229 + L E ++ E A I K FLPEF + F Q E+ + Sbjct: 179 -LGLLEVLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVYESPLMTID 237 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRA-DGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + ++L+RN ERDR L T+ G HK DL +G P++ S+GQ K + AL+LAQ F Sbjct: 238 FQDLLDRNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALKLAQYSF 297 Query: 289 LTRESGRRCLYLIDDFASELDDER-RGLLASRLKATQSQVFVSAISAEHVIDMSDENS-- 345 L G + L L+DD +LD+ R R L+ + Q+F++ +E V + +E + Sbjct: 298 LQSRKGFKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIFEEIAQP 357 Query: 346 -KMFTVEKGKITD 357 ++F ++ G I D Sbjct: 358 IRIFDIKGGAIQD 370 >UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax=Bacilli RepID=RECF_BACC2 Length = 375 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 19/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + ++++RN E +L+ N ++G N GKT+++EAIY L ++ R+ + Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++E + G+LQ ++ L K+G K +++ + K+++ +M + + PE Sbjct: 61 IRWDEEFGQIKGKLQKRNSSLSLELNISKKG-KKAKLNQLEQQKLSQYIGVMNVVMFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV---TRYEQ--LR 175 L+ G P+ RR FLD P + S +++L QRN L+++ ++ E+ L Sbjct: 120 DLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLD 179 Query: 176 PWDKELIPLAEQI-----------STWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW 224 + +LI +I W A GI+ + + + P ++ S Sbjct: 180 VFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSK 239 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 KE Y E + +R+ T GPH+ DL+ + V+ S+GQ + +L+LA Sbjct: 240 IKEV-YYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLA 298 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + E + L+DD SELDD R+ L + ++ + Q FV+ S + + + ++ Sbjct: 299 EIELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQG-KVQTFVTTTSVDGIEHETLKD 357 Query: 345 SKMFTVEKGKI 355 +K V G + Sbjct: 358 AKTIHVTNGTV 368 >UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=bacterium Ellin514 RepID=B9XRI4_9BACT Length = 361 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 161/336 (47%), Gaps = 9/336 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +RDFRN D+ +PGF L+G N GKT++LEAIY + R+FR + ++ Sbjct: 1 MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +RH Q+ + + G++ G+ + E + + + K+ +D K+A+ + + + Sbjct: 61 VRHGQKGYFVGGKVVGQGDHEIKMYWSP---AERKLSLDNQPIRKLADYFGAIRVVIFCT 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWD 178 E L+ G + RR F+D P + L+ RNA L+Q + E L + Sbjct: 118 EDLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALESFT 177 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 EL+ L + R E ++ +A + + + + + ++A L + Sbjct: 178 AELVKLGNDLIRMRHELIPKLSP-LARLAYRRISNDAEELRLEYQPSVKKDFAVELAQTR 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 R+R T GPH+ ++++ + S GQ + L AL++AQ E+LT G + Sbjct: 237 ARERTYRSTLIGPHRDEVQLLLNDRSAAQFGSEGQKRTLAIALKMAQAEYLTGLHGSAPI 296 Query: 299 YLIDDFASELDDERR-GLLA--SRLKATQSQVFVSA 331 LIDD ELD +RR GLL R T+ QVF++ Sbjct: 297 LLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTC 332 >UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPF3_9FUSO Length = 364 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/369 (24%), Positives = 173/369 (46%), Gaps = 19/369 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L +FR +E L FN + G NG GKTS +EA++ L G++FR+ + + Sbjct: 1 MYLKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R+ + ++ G+ + E I L D + K + +K + L+ + PE Sbjct: 61 FRYNKNRVIVFGKYINKNEEENI-LAIDVNEEKKDFYINRNKNKYIDYVGLLNIISFIPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDK 179 ++ G P RR F ++ + + + + +++LK RN +++ TR E +++ Sbjct: 120 DIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYSIYNE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMA-DTCKQFLPEFSLTFSFQ---------RGWEKETE 229 + + I R E+ I+ + + K F P+ L + E + + Sbjct: 180 KFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEEIKEK 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 ++E ++R ER++ L Y+ GP K D +G + S+G+ K ++ +L++++ + L Sbjct: 240 FSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAKSFSSQGEKKSIIFSLKVSEIDML 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E L+++DD AS D+ R+ + + Q F+++ ++ K F Sbjct: 300 VKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTEDLNI------KGKKFI 353 Query: 350 VEKGK-ITD 357 +EKGK ITD Sbjct: 354 IEKGKVITD 362 >UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI3_CALS8 Length = 349 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 88/330 (26%), Positives = 150/330 (45%), Gaps = 9/330 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FRN G N ++G N SGKT++LEAIY G++F+S + + Sbjct: 1 MIIKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFKS-KDTNL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E F L + + E I D+ G ++ I+ ++++EL P+ Sbjct: 60 ISFDSEYFKLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFVYFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P + + ++ L RNA L+ + + + +D E Sbjct: 120 STELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFLKSYDKKDIIDVYDIE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADT-CKQFLPEFSLTFSFQRGW--EKETEYAEVLERN 237 L L QI R E ++ + K F + ++ F+ E EY L++ Sbjct: 180 LSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSIPSSSEEEYYSQLKKQ 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FE+D Q+ +T G H+ D + +G ++ S GQ+K A+ LA + + Sbjct: 240 FEKDVQMGFTTKGVHRDDFDVFINGQNAKEYASEGQIKFACIAISLASAKLFEKP----- 294 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQV 327 + L+DD SELD E+R + K Q+ + Sbjct: 295 VLLLDDIFSELDSEKRKNVLKLCKDYQAII 324 >UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RECF_CARHZ Length = 353 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 174/361 (48%), Gaps = 13/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL + +FRN E + SPG + GANG GKT+++EAIY L G++FR + + Sbjct: 1 MFVDRLQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRG-KDNSL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E+F + ++ ++T +G+ +G ++ +G + + + L TP+ Sbjct: 60 IRFGAESFQIGAKISKNGQKTTLGVEYSVKGKFFLK-NGQKQKSFSSILGNLKGVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 + G P RR LD + +++L +NA L+QV + L W+ Sbjct: 119 EPVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIEAWNY 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCK---QFLPEFSLTFSFQ-RGWEKETEYAEVLE 235 +L +I R E I D+ + +FLP + S++ G + + + E+L+ Sbjct: 179 KLAEFGAEIIKER-EKCLKILNDIINELNAQLRFLPG-KIEASYKTSGADDKEKIFELLK 236 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + + ++ GPH+ DL +G ++ S+GQ K + +L+Q ++ + SG Sbjct: 237 QKYTEEKDKKQALFGPHRDDLNFYVNGRDLKIFGSQGQKKGALLLFKLSQAVYMAKVSGE 296 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + + L+DD SE D E+R L QVF++A ID+ + + +F +E GK+ Sbjct: 297 KPVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATEP---IDLKNYHQVVF-IENGKV 352 Query: 356 T 356 + Sbjct: 353 S 353 >UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=Bacteria RepID=B0N231_9FIRM Length = 365 Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 174/368 (47%), Gaps = 20/368 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN + N L+G+NG GKT+++EAIY L G++F++ ++ Sbjct: 1 MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFKTHINKQM 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I + E + G + R + L D + + +ID D +K++E L+ + + Sbjct: 61 IMFDCEFAKVKGEVTSNNKLRSLEMILGSDFK---RAKIDDQDIYKISEYVGLLNVVVFV 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-----EQ 173 P+ L+ G P RR F+D P + S LLK+RN L+ + + E Sbjct: 118 PDDLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRDGDEY 177 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADT----CKQFLPEFSLTFSFQRGWEKETE 229 L D+++ L ++ R ++ + + K + SL +S ++E Sbjct: 178 LEVLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSC--FLKQELT 235 Query: 230 YAEVL---ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 Y +L ++N +RD + + G HK DL+I +G + S+GQ + ++ +L++A Sbjct: 236 YENILALYKKNHQRDIRYMQSHLGIHKDDLKIFMNGNAADLFASQGQQRTIVLSLKIALI 295 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E + E G + L+DD SELD+ R+ +L L + Q F++ S + + E +K Sbjct: 296 ELIKDEIGEYPVLLLDDVLSELDEARKNMLLDILNQ-KIQTFITTTSIDGINHQIVEKAK 354 Query: 347 MFTVEKGK 354 ++ GK Sbjct: 355 KIYIKGGK 362 >UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=Clostridiales RepID=B0PBN6_9FIRM Length = 379 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 16/338 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ I DFRNI + +LAL PG N + G NG GKT+ +EA++ ++FR + ++ Sbjct: 1 MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + RE LT +K+ ++ AELA + +P Sbjct: 61 VRFGAPQAAVEAGFYAAGREQKALLTIEKR--RAAALNEVPLKSAAELAGQFCAVVFSPA 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 TL+ GP+ +R F+D +P + + R+L QRN L+ + + ++ L Sbjct: 119 HLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMYETSLFDTLDI 178 Query: 177 WDKELIPLAEQISTWRAEY-------SAGIAADMADTCKQFLPEFSLTFSFQRGW---EK 226 WD L + RA + + I +A ++F ++ + + G E Sbjct: 179 WDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLAVDPGASMSEI 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 E E L + D + T GPH+ D+ + DG S+GQ + + AL+LA+ Sbjct: 239 EQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTLDGQSARAFGSQGQQRSCVLALKLAEC 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQ 324 E + G + L+DD SELD RR L + L+ Q Sbjct: 299 ELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQGRQ 336 >UniRef50_UPI00016C0204 DNA replication and repair protein RecF n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0204 Length = 359 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/366 (25%), Positives = 169/366 (46%), Gaps = 22/366 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + +FRN + L+LS G N G N GKT+VLEAIY R+ R+ V Sbjct: 1 MYISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + E +++ L + + I K+ S V ++ +K+ +L ++ + PE Sbjct: 61 IKWDSENALVNLMLTKQYSLSTIDFIISKRYKS-VLVNKLPINKLTKLFGVLNVVFFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---RYEQLRPW 177 L+ PK RR F+D + + + S+ ++LKQRN L+Q YE L Sbjct: 120 NLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEFLDIL 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS-----FQRGWEKETE--- 229 D+ L A++I R+E+ + A L S + +E + Sbjct: 180 DENLYKYAKKIFYKRSEFIENLNTKAA--------AIHLELSGGKEHLKLIYEPNVDINI 231 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + L+ N +RD + T GPH+ D+ + ++ S+GQ + + +++ AQ + + Sbjct: 232 FKSRLKFNRDRDIRTKTTNSGPHRDDINFLMNDHSLKLFGSQGQQRTCILSIKFAQIDII 291 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 T +G + L+DD SELD R+ L + Q+ + + + + +++ K+F Sbjct: 292 TEITGETPILLLDDILSELDINRQKYLFKYINNLQTMITCTGVDPN--LFTWNDSIKVFI 349 Query: 350 VEKGKI 355 VEK I Sbjct: 350 VEKANI 355 >UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RECF_HELMI Length = 372 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 24/374 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + FRN + PG N VGANG GKT++LE+I L G + R + + Sbjct: 1 MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ ++ + + + + I L + +++ ++A+L+ M + +PE Sbjct: 61 VQWQEAYYRIKAMGTADGQPVVIELAFGGERRKLAKVNNRRLRRIADLSETMNTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 +L+ G P RR +LD P + S R+L QRN+ LR++ +L Sbjct: 121 DLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSATAAELEL 180 Query: 177 WDKELIPLA-----------EQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWE 225 WD +L PLA +I+ + + G++ D + F L R W Sbjct: 181 WDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPDDRSR-WL 239 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + A R E RQ T T GPH+ DL++ +G S+GQ + + +L+LA+ Sbjct: 240 EAYRKALQERRAEEIARQATLT--GPHRDDLQLFLNGRDARIYGSQGQQRSIALSLKLAE 297 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN- 344 F+ + + L+DD SELD +RR L S L++ QVF I+ H+ S E Sbjct: 298 IAFIHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVF---ITTTHLHAFSPEQL 354 Query: 345 --SKMFTVEKGKIT 356 + ++ ++ G+++ Sbjct: 355 GRAGIYRIQAGQLS 368 >UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=Ammonifex degensii KC4 RepID=C9RA71_AMMDK Length = 358 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 175/370 (47%), Gaps = 32/370 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FRN + S G N L G N +GKT++LEA+Y + GR+FR+L+ + Sbjct: 1 MWIRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEI 60 Query: 61 IRHEQEAFVLHGRLQGE--ERETAIGLTKDK-----QGDSKVRIDGTDGHKVAELAHLMP 113 +R + ++ G++ E ET + K QG R D G KV Sbjct: 61 VRTGETTTLIKGKIATAWGEIETEVRFKKGTKLLFYQGKPASRRD-FPGEKV-------- 111 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-E 172 + L PE ++ G P RR F + PG+ + +R L+QRNA LR + E Sbjct: 112 VLLFRPEDLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGE 171 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-----QRGWEKE 227 +L W + L+ + R E G+ + + + L L + EK Sbjct: 172 ELEIWTEALVSAGALLYRLRVE-GLGLIGPLTSSLYRELVGKKLVLRYATNAVSPAKEKP 230 Query: 228 T--EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 ++AE L E+++ L T GPH+ D +G + SRG+++ + AL+LA+ Sbjct: 231 LAEQFAEALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRYKGSRGEVRAAVLALKLAE 290 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + L + +G R ++ +DD SE D +RR LA L+ QS FV+ SAE + + Sbjct: 291 AKLLEKMTGERTIFFLDDVFSEFDPQRRRALALYLEERQS--FVT--SAEPELKLP---G 343 Query: 346 KMFTVEKGKI 355 + F +E+G++ Sbjct: 344 RTFLIEQGRL 353 >UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI71_9FIRM Length = 369 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 25/375 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +R++RN + L L+P N L G+N GKT++LE++ + GR+FR+ G + Sbjct: 1 MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKV-RIDGTDGHKVAELAHLMPMQLITP 119 I + R+ + ++ D +K+ ++G ++ L+ + L TP Sbjct: 61 ILWGENNCTASARVCNRMGRETLKVSFDAGSRNKIFSVNGLTMNRSNYAGRLVTV-LFTP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----QVTRYEQLR 175 E +++ G P RR F D P + L+++++QRN L+ +V ++L Sbjct: 120 EDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQELA 179 Query: 176 PWDKELIPLAEQISTWR--AEYSAGIAADMAD------------TCKQFLPEFSLTFSFQ 221 W+++L L+ +I R A G+ A ++ + FLP Q Sbjct: 180 SWNEQLAILSAKILIKRVTAIRRIGLLARLSHRNLTGRDESLEILYQSFLPLDDGILDAQ 239 Query: 222 RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 ++ A + E+ E R L T GPH+ D+ +G S+GQ + L+ AL Sbjct: 240 --VIQDALLAGLEEKKHEEAR-LGQTLLGPHRDDIVFNINGRNARLYASQGQQRTLVLAL 296 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LA+ EF+ E+G + L DD SELD+ RR LL + + Q F++ AE + Sbjct: 297 KLAELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETIDG-RIQTFITGTEAEKLRQFK 355 Query: 342 DENSKMFTVEKGKIT 356 E+ KMF V +G++ Sbjct: 356 -ESGKMFKVREGEVV 369 >UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=Pelotomaculum thermopropionicum SI RepID=RECF_PELTS Length = 364 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 114/380 (30%), Positives = 175/380 (46%), Gaps = 40/380 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPG--FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIG 58 M L RL + +FRN A A+ PG FN L G N GKT++LE+IY GR+FR+ + Sbjct: 1 MLLRRLEMLNFRNF--ARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREK 58 Query: 59 RVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGT--DGHKVAELAHLMPMQL 116 +I+ E+E + + RE + +T G ++ ++G GH + L Sbjct: 59 ELIKREKEFSSIRCLFETRGREVEVKVTL-VPGRKRIEVNGVLKSGHPFGWPG----VVL 113 Query: 117 ITPEGFTLLNGGPKYRRAFLDW--GCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TR 170 TP+ ++ G P RR FLD+ G FH P + R+L QRNA LR+ T Sbjct: 114 FTPDDLVMIKGSPAERRRFLDYDLGPFH--PHYAHCLDRYNRVLSQRNALLREAKEKRTT 171 Query: 171 YEQLRPWDKELIPLAEQISTWRA----EYSAGIAA---DMADTCKQFLPEFSLTFSFQRG 223 L WD++L ++ R ++ I A ++ + + E S S + G Sbjct: 172 GGPLEVWDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELTEGAENI--EISYLSSLKIG 229 Query: 224 WEKETEYAEVLER-----NFERDRQLT--YTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 +E E+ ER RD ++ T GPH+ DL I+ DG S+GQ + Sbjct: 230 --EECGEDEIYERFSGELRLVRDEEIARMQTLVGPHRDDLHIKVDGHDARVYCSQGQQRT 287 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++ L++ E E+G + L+DD ELDD RR L RL Q F++ Sbjct: 288 IVLTLKVFLIEQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCTRVN- 345 Query: 337 VIDMSDENSKMFTVEKGKIT 356 D+ +K+FTV G++T Sbjct: 346 -FDIEGFKAKVFTVSGGEVT 364 >UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=Clostridium thermocellum RepID=RECF_CLOTH Length = 369 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 87/352 (24%), Positives = 162/352 (46%), Gaps = 22/352 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+L+++FRN + + S N + G N GKT+++EA++ GR+ R+ + + Sbjct: 1 MYIDRILLKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + F + L+ E I + + V+I+ K+ L + + +PE Sbjct: 61 VNIDGTGFSVLLDLESSEGRKKIEIDYECGKKKVVKINEIPLKKIGNLMGNLLAVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 ++ GP RR F+D +P +F ++L QRN L+++ + L Sbjct: 121 DILIIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLDTLEV 180 Query: 177 WDKELIPLAEQISTWRAEY-------SAGIAADMADTCK----QFLPEFSLTFSFQRGWE 225 WD ++ L+ +I T R+E+ S I + D + ++ P L E Sbjct: 181 WDYKMAELSSRIMTTRSEFIKRLCEISKKIHLKLTDGSEIMEIKYSPSVDL-HDLSNPSE 239 Query: 226 KETEYAEVLE--RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 + E+ L R+ E R +T GPH+ D + +G ++ S+GQ + + +L+L Sbjct: 240 IKNEFIRQLNSIRDIELKRCVTLI--GPHRDDYEMELNGLNLKMFGSQGQQRTSLLSLKL 297 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 A+ E + E+ + L+DD SELD +RR L ++ Q+ F++ E Sbjct: 298 AEIEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIRNVQT--FITCTDKE 347 >UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Tax=Bacilli RepID=RECF_LACBA Length = 384 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/385 (25%), Positives = 172/385 (44%), Gaps = 45/385 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++ FRN TA L G N L+G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + GR+ + LT +QG + R++ + ++++ + + L PE Sbjct: 61 VNWQAKTAKVSGRVVKAAGAVPLELTFSRQG-KRARVNHLEQARLSQYVGQLNVILFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-------- 172 ++ G P RR F+D P + S + LLKQRN L+ + + Sbjct: 120 DLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDLLFLS 179 Query: 173 ----QLRPWDKELIP---------------LAEQISTWRAEYSAGIAADMADTCKQFLPE 213 QL + E+I + +IS R E + A +AD +P Sbjct: 180 VLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLTDVPT 239 Query: 214 FSLTFSFQRGWEKETEYAEVLERNFERDRQLTY--TAHGPHKADLRIRADGAPVEDTLSR 271 + S YA+ ++D++L T GPH+ DL + +G V+ S+ Sbjct: 240 ITAALS--------ALYAK------QQDKELYQGTTLVGPHRDDLHFQVNGKNVQTFGSQ 285 Query: 272 GQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 GQ + +++LA+ + + E+G + L+DD SELDD R+ L + ++ + Q F++ Sbjct: 286 GQQRTTALSVKLAEIDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQ-DKVQTFITT 344 Query: 332 ISAEHVIDMSDENSKMFTVEKGKIT 356 S + ++ +F V +G + Sbjct: 345 TSLSGITRQLIKDPTIFHVAEGTVV 369 >UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYE1_9FIRM Length = 384 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 90/346 (26%), Positives = 159/346 (45%), Gaps = 16/346 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN + +L L PG L G N GKT++LE+I+ L ++ R+ + Sbjct: 1 MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +QE + ++ + E + LT K+G +++ D K++ L PE Sbjct: 61 IEWDQEQARIEAVIETKNYEIPLALTLTKKGKV-AQVNYLDQSKLSHFVGQFNTVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---YEQL--R 175 L+ G P RR FLD P + +RLLKQRN+ L+Q R ++Q+ Sbjct: 120 DMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQVFFE 179 Query: 176 PWDKELIPLAEQISTWRAEY-------SAGIAADMADTCKQFLPEFSLTFSFQRGWEKET 228 ++L + +R E+ ++ I ++++ Q E+ + E Sbjct: 180 ILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLEYINGSQVYQPLSLEE 239 Query: 229 EYAEVLERN---FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 ++L++ R+R T GPH+ D + + S+GQ + ++ +L+LA+ Sbjct: 240 RIKQLLDQASTYASRERDQGTTLFGPHRDDFMTYVNDKKAQFFGSQGQQRTIVLSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 E + + G + L+DD SELDD+R+ +L S +K + +A Sbjct: 300 IELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDKVQTILTTA 345 >UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX6_9FIRM Length = 359 Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 175/363 (48%), Gaps = 14/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN ++ P N +VG N GKT+++EA+Y L R+FR+ Q + Sbjct: 1 MYIKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E++ L +++ ++E+ + G S + I + K +E + + L +PE Sbjct: 61 IQKEEKYANLACQIEERKQESYLRCILHGNGKS-LFIGKINISKTSEFIGRLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L + PK RR F+D + + + LLK+RN LR+ E L D+ Sbjct: 120 DIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTKIDETMLDILDQ 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQF--LPEFSLTFSFQRGWE-KETEYAEVLER 236 +++ +I R + I + + +P +L ++G E K+ E E++E Sbjct: 180 QMVESEVEILKRRISFLQFINQKIESLFQSISGMP-LNLKIEIKQGIEVKKIEKKELVEA 238 Query: 237 NF---ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 + +RD + T G H+ D++ DG + + S+GQ +L+M A +L ++ S Sbjct: 239 HLSSRKRDIETRITNVGIHRGDIQFLLDGKDILLSASQGQKRLVMIAFKLTILRYIEFIS 298 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID-MSDENSKMFTVEK 352 R+ + L+DD SELD ER+ L +K Q F I+A H+ D + E + ++E Sbjct: 299 KRKAIVLLDDVLSELDLERQKRLIHAVK-NDYQCF---ITATHLPDSLKLEQTNCISIED 354 Query: 353 GKI 355 GKI Sbjct: 355 GKI 357 >UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=Symbiobacterium thermophilum RepID=RECF_SYMTH Length = 375 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 110/376 (29%), Positives = 173/376 (46%), Gaps = 28/376 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + FRN ++ + SPG N L G N GKT++LEAI+ L GR+ R+ + + Sbjct: 1 MYLSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDM 60 Query: 61 IRHEQEAFVLHG----RLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 ++ +E + R E E GL KQ ++I+G K+A L + + L Sbjct: 61 VQEGREELLARAAVVRRTGTIELELRCGLQTRKQ----LKINGIAERKIARLVGSLAVVL 116 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 +P+ LL G P RR FLD + RL+ QRN L+Q E L Sbjct: 117 FSPDDLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLMA 176 Query: 177 -WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE--FSLTFSFQRGWEKETEYAEV 233 +D++L+ Q+ RAE ++ +A + L E L ++Q + A++ Sbjct: 177 VYDEQLVETGAQLVVRRAEAVRRLSP-IASRYHRMLAEDREDLELAYQSQGVGDDGAADL 235 Query: 234 ------------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 R+ ER RQ+T GPH+ D+ G S+GQ + + AL Sbjct: 236 ETVRRRLERELARLRSEERRRQVTLV--GPHRDDVGFWVAGRDARLYASQGQQRTAVLAL 293 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LA+ EF++ E G L L+DD ASELD RR L S ++ Q F++ E ++ Sbjct: 294 KLAELEFMSEEIGEPPLLLLDDVASELDPHRRHYLLSAVREG-VQSFITCTDLEDLMVRE 352 Query: 342 -DENSKMFTVEKGKIT 356 + ++F V G + Sbjct: 353 WPADHRLFRVRAGTVV 368 >UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=Cystobacterineae RepID=RECF_MYXXD Length = 380 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 158/372 (42%), Gaps = 19/372 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + DFRN+ L S VG NG GKT++LEA+Y L + R+ ++ + Sbjct: 1 MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60 Query: 61 IRHEQEAFVLHGR--LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + + GR L+G ERE A+ + G + +DG + + + + T Sbjct: 61 VRWGSQGARVTGRFLLKGAEREIAVEVGG---GTRQAFVDGKKASSLEDYFGGVSVVAFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRP 176 P+ ++ GGP RR FLD F+ P F R LK RN LR+ + L Sbjct: 118 PDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYLEA 177 Query: 177 WDKELIPLAEQISTWR----AEYSAGIAADMADTCKQFLP--------EFSLTFSFQRGW 224 +D+ L +I + R AE + A A + P F+ Sbjct: 178 YDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADET 237 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E L RD + +T+ GPH D+ + G S+GQ + L+ ++A Sbjct: 238 ALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIA 297 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E L G L L+DD +SELD ER L L + +QV ++ V + ++ Sbjct: 298 EIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADD 357 Query: 345 SKMFTVEKGKIT 356 + V G++ Sbjct: 358 TLWLDVHGGQVA 369 >UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=root RepID=A7AC47_9PORP Length = 367 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/372 (25%), Positives = 177/372 (47%), Gaps = 29/372 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I +++NI A+++ SP N G NG GKT++L+A++ L ++ + ++ Sbjct: 1 MILKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q+ VL G E RE I ++ + + + + K++E L+P+ +++P Sbjct: 61 INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEHIGLLPLVMVSPA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----QVTRYEQLR- 175 L+ GG + RR FLD + + A + L QRN+ L+ + YE L Sbjct: 121 DSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCIDASLYEVLEM 180 Query: 176 --------PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE 227 ++K + + + I + EY I +++ + ++ Sbjct: 181 QLDMYGRMVYEKRQMLVNDFIPIFN-EYYQTICRSTEQVGLRYISQL-----------EK 228 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 A++L N ERDR L YT+ G HK +L + +G + S+GQ K + AL+LAQ Sbjct: 229 GSLADMLAANRERDRILGYTSTGIHKDELEMTLNGHLIRRVGSQGQNKTYLIALKLAQYV 288 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH---VIDMSDE 343 FL+ R + L+DD +LD +R + + Q Q+F++ + ++ ++ + Sbjct: 289 FLSCRGQARPILLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQSINH 348 Query: 344 NSKMFTVEKGKI 355 +F VE+G++ Sbjct: 349 GYALFRVEQGEV 360 >UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=Fusobacteriaceae RepID=C7NC99_LEPBD Length = 362 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 93/371 (25%), Positives = 179/371 (48%), Gaps = 24/371 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ +FR + L FN + G NG GKTS++EA++ L G++FR+ ++ + Sbjct: 1 MYLDQISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEI 60 Query: 61 IRHEQEAFVLHGRLQGE---ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 ++ ++ G+ + + E AI + +DK+ ID + +K L+ + Sbjct: 61 RKYNLNRLIVFGKYRHKDLSENIIAIDVNEDKKD---FYID-REKNKYINYVGLLNIISF 116 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RP 176 PE L+ G P RR F ++ + + + N +++LK RN +++ E++ + Sbjct: 117 IPEDIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKI 176 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS---LTFS-FQRGWEKET---- 228 ++++ I I R E+ ++ + ++ E S L + F EK+T Sbjct: 177 YNEKFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREEL 236 Query: 229 -EYAEVL-ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 E E+L R ER++ L Y+ GP K D +G + S+G+ K ++ +L++++ Sbjct: 237 KEKFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAKAYSSQGEKKSIIFSLKISEI 296 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 + L +E ++++DD AS D+ R+ + S + Q F+++ D+ E K Sbjct: 297 DILIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTE-----DLGIEGKK 351 Query: 347 MFTVEKGKITD 357 F VEKGKI + Sbjct: 352 -FIVEKGKIIN 361 >UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVA0_DESAS Length = 376 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/379 (24%), Positives = 168/379 (44%), Gaps = 40/379 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I +FRN ++ + N +G N GKT++LEAI L GR+FR+ + Sbjct: 1 MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E L L+ + +I ++ + ++I+ + K ELA + TP+ Sbjct: 61 INFDSEQSKLKTELKAYNQNYSIDISLSRTKPKIIKINNSTTSK-PELATNFGTIVFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------L 174 +++ G PK RR FLD P + + N +++L QRN L+++ +Q L Sbjct: 120 QLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQADTFDLL 179 Query: 175 RPWD------------------KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL 216 WD K+LIP+A+QI I +D ++ +L Sbjct: 180 ELWDNQLISYGAKILMARMEILKKLIPMAQQIHN-------QITSDKEKLTIRYRSSLNL 232 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 +F+ + ++ EV+ +N ++D T GPH+ DL + + D S+GQ + Sbjct: 233 NSNFREELIYD-QFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNITDFGSQGQQRT 291 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++ L+ A + E + L+DD ELD +R+ + L QVF+++ Sbjct: 292 IILTLKFAIINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLLNK-DVQVFITSTG--- 347 Query: 337 VIDMSDENSKMFTVEKGKI 355 M++ + ++K I Sbjct: 348 ---MANTEKNLINIKKNAI 363 >UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVG9_9SPHI Length = 366 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 162/367 (44%), Gaps = 15/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F+N E L SP N +VG NGSGKT++L+ I+ L ++ Sbjct: 1 MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDSLN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + H+++ F + G + E + + T + ++ +G K +E L+P+ LI P+ Sbjct: 61 VLHDKDFFAIKGHFEIESKPLEVRCTVELGKKKQIFQNGKALDKTSEHVGLLPLVLIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ GG RR F D + + LKQRNA L++ + L Sbjct: 121 DTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGRRDLTLLG 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMAD---TCKQFLPEFSLTFSFQRGWEKETEYAE 232 +D+E+I L++ I+T RAE +A + Q + ++ + + E + Y Sbjct: 181 SYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVYETEALREDFSNYFS 240 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + +D + G HK D P+ S+GQ K + +L+LAQ + Sbjct: 241 SLRK---KDFITKNSNAGIHKDDYSFLIGDHPIRKIGSQGQQKSFIISLKLAQFQIFENA 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAE---HVIDMSDENSKMF 348 G + L L+DD +LDD R + + + T Q+F++ E ++ D F Sbjct: 298 KGEKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLTDARPERSQKILSQLDSEVFFF 357 Query: 349 TVEKGKI 355 +EKG + Sbjct: 358 ELEKGNV 364 >UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=Chlamydia trachomatis RepID=RECF_CHLT2 Length = 365 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/313 (27%), Positives = 138/313 (44%), Gaps = 12/313 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFRN L L P N + G N GKT++LEA+Y L GR+FR+ ++ Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR F + +E + + DK+G K+ DG K++EL L P+ L + + Sbjct: 61 IRFGASHFFIEAVFSHKEVFHTLSIQVDKKG-KKILFDGAPITKLSELVGLFPVILFSIK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR FLD + S + L QRNA+++ + + + W+ Sbjct: 120 DIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQ-KAISAWNSP 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE---------TEYA 231 LI ++ R E + + L E +L+ ++ E + Y Sbjct: 179 LIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKE-TLSLRYESSLITEESPTLNDIASNYY 237 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L +D L YT GPH+ +L + + PV S GQ L+ LR A+ +L Sbjct: 238 EQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSSEGQKHSLLAVLRFAECVYLQE 297 Query: 292 ESGRRCLYLIDDF 304 E L +DD Sbjct: 298 EFCIHPLLCMDDI 310 >UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=RECF_CYTH3 Length = 377 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 103/376 (27%), Positives = 165/376 (43%), Gaps = 34/376 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +F+N +L+ S G N G NGSGKT++L++IY L ++F S + Sbjct: 1 MYIEKISLLNFKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I Q F G Q +E I D + S +D K++E P ++TP Sbjct: 61 ITTGQGYFSALGWFQENAKEFKIQYDFDGKKKS-FTVDKKPYAKISEHIGRFPAIVLTPH 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------VTRYEQL 174 L+ + RR F D + + A +KQRNA L+Q V R + Sbjct: 120 DTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDRI-LM 178 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF------QRGWEKET 228 +D L+ + I+ R EY K+ LP F +S E ET Sbjct: 179 DAYDHNLLQSGKIIAQKRDEY-----------LKRLLPIFQEYYSLLSPDHEATDIEYET 227 Query: 229 -----EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 ++ +V + ++ +D L T G HK D + + P++ S+GQ K + AL+L Sbjct: 228 NVLSADFEQVFKDSYSKDLILQRTNKGVHKDDFKFLINNEPIKHYGSQGQQKTFVIALKL 287 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDER-RGLLASRLKATQSQVFVSAISAEHVIDMSD 342 AQ E L +G + L+DD +LDD R L+ K Q+F+S + Sbjct: 288 AQYELLKACTGHNPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFISDARPDRSSIFFQ 347 Query: 343 ENSK---MFTVEKGKI 355 N+K MF +++GK+ Sbjct: 348 SNTKDFRMFIIDRGKV 363 >UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=RECF_DESAP Length = 360 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 109/378 (28%), Positives = 164/378 (43%), Gaps = 41/378 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + D+ + G N + G N GKT+ +EA++ G +FRSL+ + Sbjct: 1 MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + QE+ + L+G++ T + + G V G AELA + L TP+ Sbjct: 61 VTWGQESAFVEAELEGKDGRTRVRAELNPAGKKIVWAGEPVGK--AELAVRLGTVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--RY-EQLRPW 177 +L+ GGP+ RR FLD PG+ TA +R L+QRN LR RY E L W Sbjct: 119 DLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSELLDLW 178 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY------- 230 E+ +Y + + + K+F P F G E Y Sbjct: 179 TDEV-----------CKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSVGLS 227 Query: 231 -----------AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 E L + + + T GPH DL +G S+GQ + ++ Sbjct: 228 NGVRTPGAGDLRETLAAVRQDEIRAGQTQAGPHLDDLAFMVNGKEGRPFASQGQQRSVVL 287 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 AL+LAQ R +G + L+DD E D ERR + L+ Q+ V V + E V+ Sbjct: 288 ALKLAQVFLWKRHTGEAPVVLLDDLLFEFDRERRDKV---LETLQNDVQVFITTGERVLS 344 Query: 340 MSDENSKMFTVEKGKITD 357 S++F V G I + Sbjct: 345 ----GSRVFCVHSGNIQE 358 >UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum reducens MI-1 RepID=RECF_DESRM Length = 371 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 162/350 (46%), Gaps = 28/350 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L +R+FRN + A P N + G N GKT++LEAIY G +FR+ + V Sbjct: 1 MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 E V++ + R + K ++G K+ ++G + + +EL L + L PE Sbjct: 61 TNWESNHTVINTEVNLSSRLIKLQW-KIQEGSKKLSLNGVERPR-SEL-DLFGVVLFCPE 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 +L+ G P+ RR FLD+ PG+ W ++L QRN+ L+++ ++ E L Sbjct: 118 DLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQEVLEV 177 Query: 177 WDKELIPLAEQISTWRAEY-----------SAGIAADMADTCKQFLPEFSLTFSFQRGWE 225 WD++L ++ R + G+ + ++L L G Sbjct: 178 WDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLEPGLSEG-- 235 Query: 226 KETEYAEVLERNFERDRQL----TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 + +V + ++ RQ+ T GPH+ DL + +G + S+GQ + + +L Sbjct: 236 ---QIYQVFSSSSKKIRQMELKRCQTLLGPHRDDLSLAINGVEAKTFGSQGQQRTVTLSL 292 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 +L+Q + E G + L+DD ELD R+ +L ++ + Q F++ Sbjct: 293 KLSQLDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKI-LNKVQTFITT 341 >UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax=Clostridium RepID=RECF_CLOB8 Length = 367 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/365 (22%), Positives = 167/365 (45%), Gaps = 11/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + ++RN + + L+ N VG N GKT++LE++Y ++ R+ + + Sbjct: 1 MYVKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E + + + I + + G ++++ +K+ EL + + + +PE Sbjct: 61 INWENSTAYISLLIGKNRLDKKIDINILRDGKKAIKVNNIKVNKIGELFGIFNVVMFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDK 179 ++ P RR LD P ++ ++L +RN L+ + E L +D Sbjct: 121 DLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDILDVYDI 180 Query: 180 ELIPLAEQISTWRAEYSAGIA-------ADMADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 +L A+ I + R EY I ++ ++ +++ T + + G K+ Y + Sbjct: 181 QLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENGKFKDN-YLK 239 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L+ N ++DR+ T+ GPH+ D + + + S+GQ + + ++ A + + Sbjct: 240 KLKDNIQKDREKGLTSVGPHRDDFSVFINNIDTKIFGSQGQQRTSILTMKFASLKIIREI 299 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 +G + L+DD SELD R+ + +K Q+ + + I E + D D+ K+F V Sbjct: 300 TGEYPVLLLDDVLSELDLNRKKYILRSIKDIQTIITCAGI--EDLNDYLDDKVKIFNVSN 357 Query: 353 GKITD 357 G+I + Sbjct: 358 GQILN 362 >UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=Magnetococcus sp. MC-1 RepID=RECF_MAGSM Length = 382 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 109/375 (29%), Positives = 173/375 (46%), Gaps = 28/375 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +RDFRNI A+L PG N + G NG GK+++LEAI L GR+FR + Sbjct: 1 MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD---KQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 R+ Q F L+GE +G + + G V+I+G + L + ++ Sbjct: 61 RRYGQPWF----HLRGETTARDLGHRLEFFGQAGRQAVKINGKSASAASALGQALAAVIV 116 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCF-----HNEPGFFTAWSNLKRLLKQRNAALRQVTRYE 172 TP+ L+ GP RR F+DW F + ++ LK RN L+ + R E Sbjct: 117 TPDTLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLK-LPRVE 175 Query: 173 --QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF--LPEFSLTFSFQ-----RG 223 + W+ +L L +++ R + + + + ++T S Q Sbjct: 176 AGEWLAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTH 235 Query: 224 WEKETE-----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLM 278 W ++ Y +L N +R+ TA GPH+ DL +R DG + S+GQ K Sbjct: 236 WAEDESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHALAQFGSQGQQKRAA 295 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 AL+LA+ + L + G L+++DD A+ELD + L L Q+FV++ A+ I Sbjct: 296 LALKLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVASCRAQ-TI 354 Query: 339 DMSDENSKMFTVEKG 353 S + F V++G Sbjct: 355 PWSGLAPQRFYVDQG 369 >UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax=Actinobacteria (class) RepID=RECF_CLAMS Length = 408 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 106/373 (28%), Positives = 157/373 (42%), Gaps = 39/373 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFRN AD+AL PG VG+NG GKT+++EA+ L + R + Sbjct: 1 MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E+ V+ LQ RE + + ++ ++ +++GT K EL L PE Sbjct: 61 VRQGAESAVIRALLQHAGRELRVEVQINRSAANRAQVNGT-ATKTRELPRYFSSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-------QVTRYEQ 173 L+ G P RR LD P S+ R LKQRN L+ + + Sbjct: 120 DLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQLST 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMA---------DTCKQFLPEFSLTFS----- 219 L WD+ L+ + QI R + ++A D PE S+ Sbjct: 180 LDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILADDPGED 239 Query: 220 -------------FQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 F R + + + R R+ + T GPH+ D+ R +G P + Sbjct: 240 DVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLNGLPAK 299 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRES--GRRCLYLIDDFASELDDERRGLLASRLKATQ 324 S G+ A++LA E L R+S G L L D FA ELD RRG LA + + Sbjct: 300 GYASHGESWSFALAIKLASAELLRRDSQTGDPVLILDDVFA-ELDQARRGRLAEAVTGFE 358 Query: 325 SQVFVSAISAEHV 337 QV ++A E V Sbjct: 359 -QVLITAAVFEDV 370 >UniRef50_A5WBC3 DNA replication and repair protein RecF n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WBC3_PSYWF Length = 459 Score = 117 bits (294), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 86/263 (32%), Positives = 134/263 (50%), Gaps = 11/263 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 LT+L I RN+ + ++ + N VGANGSGKTS+LE++Y L G++FR Q R I Sbjct: 2 LTQLSIHQLRNLHSVNIKVG-QCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H +H + +++ + K + + +R+D + + LA +P LI P Sbjct: 61 HHAAHATVHAKF---ANGSSMAIQKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSM 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ---VTRY--EQLRPW 177 +L G RR LDW FH +PGF W +RLLKQRN LRQ ++ Y ++L W Sbjct: 118 DVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAAW 177 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETEYAEVLE 235 DK L A I+ +R E +Q LP+++ + F G+ + E+L+ Sbjct: 178 DKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQ 237 Query: 236 RNFERDRQLTYTAHGPHKADLRI 258 + +D Q YT G H+AD+++ Sbjct: 238 QRLAQDFQTGYTRVGCHRADIQV 260 >UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXQ7_DYAFD Length = 365 Score = 117 bits (292), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 166/373 (44%), Gaps = 33/373 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + F++ E N +VG NGSGKT++L+AIY L ++ Q Sbjct: 1 MWLEKLRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLTLTKSAFHNQDALG 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI-DGTDGHKVAELAHLMPMQLITP 119 IRH + F+L G + I + ++G KV + D ++++ L P+ LI P Sbjct: 61 IRHINDFFLLDGVFNEHGKHIQITCSL-QRGQRKVFMADKKHYDRLSDHIGLFPVVLIAP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-----RQVTRYEQL 174 + L+ G + RR F D PG+ T + ++L QRN L R + L Sbjct: 120 DDTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLDEDLL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-QRGWEK------- 226 +++ LI L+++I RA + ++F+P F + F G EK Sbjct: 180 ETYNEPLIVLSQRIHQHRAAF-----------MEKFVPLFYKFYEFLSSGHEKVDVIYES 228 Query: 227 ---ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 ++ RN RD T G HK + DG ++ S+GQ K + AL+L Sbjct: 229 EVVSPDFPAEFRRNRSRDLHAQRTGKGIHKDEYVFEIDGVTLKKFGSQGQQKSFLIALKL 288 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLK-ATQSQVFVSAISAE---HVID 339 AQ E L E G+ + L+DD +LDD R L + +QVF++ E +++ Sbjct: 289 AQFELLKEEKGKTPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFITDARPERSQRILE 348 Query: 340 MSDENSKMFTVEK 352 + + F +EK Sbjct: 349 HVKADVRFFEIEK 361 >UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MZ06_9BACT Length = 362 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/363 (26%), Positives = 183/363 (50%), Gaps = 9/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+NI +L PG N VG NG+GKT+V++A+Y L ++ ++ G+ Sbjct: 1 MYLKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQN 60 Query: 61 IRHEQEAFVLHGR-LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +RH + F+L G+ L E R ++ ++G ++ +G + ++++ L+P+ +++P Sbjct: 61 MRHGSDFFLLDGQYLTDEGRSESVVCAFARKGGKTLKRNGKEYERLSDHVGLIPVVIVSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWD 178 L++ RR +L+ + + A +L +RN L+ ++R EQ L +D Sbjct: 121 ADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLK-ISRDEQMLCIYD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 ++L+ I R+E +A + ++A + + R +T + E+L ++ Sbjct: 180 RQLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLEYRSELNDTPFEELLLKSR 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 E+D +T G H+ DL + G P+ S+GQ K + AL+LAQ + + G + + Sbjct: 240 EKDFVNGFTTAGIHRDDLVLHIGGYPLRKYGSQGQQKSFLIALKLAQYALVAQAKGEKPI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQ--SQVFVSAISAEH---VIDMSDENSKMFTVEKG 353 L+DD +LD R L RL Q+F++ + ++D + ++ +FTVE G Sbjct: 300 LLLDDLFDKLDAGRVEQLI-RLVGDDGFGQIFITDCNPTRLRTILDKTGDDYSLFTVENG 358 Query: 354 KIT 356 I Sbjct: 359 GIV 361 >UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=Rhodothermaceae RepID=RECF_SALRD Length = 412 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 100/369 (27%), Positives = 162/369 (43%), Gaps = 41/369 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FR ++ L+P N L GANG+GKT+VLEA++ L ++F + + Sbjct: 1 MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +R + F + GR+ Q E + L + ++G + ++A++ +P+ + +P Sbjct: 61 VRKDAPYFEIEGRIGQVREEPMTVRLAYVPGEGKSIFVNGAELDRLADIVGTLPVVVFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQ 173 E + L GGP RR F++ + +R +QRN LR + E Sbjct: 121 EDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPPDEL 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMA-----------------DTCKQFLPEFSL 216 L PW ++L+ L +I R ++ A D+ DT P+ + Sbjct: 181 LAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPDAT- 239 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 E E A ++ ERDR T GP + +L R D V S+GQ + Sbjct: 240 ----PDAIEDEFRAALARKQGQERDRGTTLV--GPQRDELVFRLDDLEVRRYGSQGQHRT 293 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLK----------ATQSQ 326 AL+LAQ +L + + L L+DD +LD ER G+ L+ AT+ Sbjct: 294 FAMALKLAQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRG 353 Query: 327 VFVSAISAE 335 F A++AE Sbjct: 354 PFEPALNAE 362 >UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=Treponema denticola RepID=Q73R61_TREDE Length = 360 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/362 (24%), Positives = 154/362 (42%), Gaps = 30/362 (8%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +FRN+E A + +S FLVG NG GKT+ LEA+Y +G +FR+ + ++ +++ F Sbjct: 10 NFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQICTKDEKEFS 69 Query: 70 LHGRLQGEER--ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + + + T + +DK+ D + K EL +P L + G Sbjct: 70 IRALYKESDNISHTISIIIQDKKKDIQKNFKKIKNSK--ELISTIPCILFHGDDIEFAVG 127 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQ 187 P +R F+D F + LK RN L Q + L + Sbjct: 128 TPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQ------------KKASLLDS 175 Query: 188 ISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG-------------WEKETEYAEVL 234 I A + I + + +++ FSL + G E E + +L Sbjct: 176 IDEIFASLALLITNERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSVKVESEEDLLILL 235 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + D ++ GPH+ + D P + S GQ +L+ LR+ Q + + ++G Sbjct: 236 AEKRQNDLIDRTSSTGPHRDRIHFIKDKKPFTERASNGQRRLISLVLRMIQAKIYSEKTG 295 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 R+ ++L+DD ELD E+R L + Q+F + + E + EN+K+F VE GK Sbjct: 296 RKPIFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENTKIFFVEDGK 354 Query: 355 IT 356 + Sbjct: 355 FS 356 >UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FBE Length = 382 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 168/376 (44%), Gaps = 23/376 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T I F+N++ A P +N +VGAN GKT++LEA++ L ++FR + Sbjct: 1 MIVTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSK--VRIDGTDGHKVAELAHLMPMQLIT 118 I + + ++Q RE I K G+S + ++G L + Sbjct: 61 ICLDGQRMSSAVKVQDSVREQKITFEMAKGGNSPKLIHLNGVKQRGTRALFDVFKCIAFI 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQL 174 P+ ++ G P+ RR+F+D P F + ++ QRNA L+++++ + L Sbjct: 121 PDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASADVL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTF--------SFQR- 222 WD++ IS R EY + I + +T E SL + F++ Sbjct: 181 EIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFEKP 240 Query: 223 -GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 G E E Y L E D + T G ++ ++ I+ +G D S+GQ+K + Sbjct: 241 IGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIKINGVSARDFGSQGQIKSAALVM 300 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LAQ E ++S + +DD ELD+ R+ + ++ QVFV+ + + + Sbjct: 301 KLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIR--DMQVFVTTPNESAL--LP 356 Query: 342 DENSKMFTVEKGKITD 357 + K+ + G+IT+ Sbjct: 357 EIKGKILRISGGRITE 372 >UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=Acholeplasma laidlawii RepID=RECF_ACHLI Length = 349 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 87/332 (26%), Positives = 163/332 (49%), Gaps = 11/332 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 +T + +R+FRN+E + ++ + G NG GKTS+LE+IY ++ RS +I+ Sbjct: 2 ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ + +L + + I LT + + + I+ ++ K+++ + + + PE Sbjct: 62 YDKPYASV--KLIEDSKLHEIVLTPNGK---RTTINKSEVRKISDYIGQLRVVMFAPEDL 116 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL---RQVTRYEQLRPWDK 179 L+ G P RR FLD + ++ K++LKQRNA L R +T Y L + Sbjct: 117 MLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLNILGE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L + QI R ++ + T + +F + ++ KE + + L+ + Sbjct: 177 QLYDVGIQIFDERQKFIEALNQKFK-TIQTKYKDFEVEMLYEPNVTKEN-FLKHLKTKQK 234 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D T G HK D ++ G +D+ S+G +L++ L+LA E++ + + Sbjct: 235 QDIMYETTTAGIHKDDFKLLYKGLNAKDSASQGTSRLIVIELKLALLEWIKEVTKTDAIL 294 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSA 331 L+DD SELD ER+ L S+L + QVF++ Sbjct: 295 LLDDVLSELDLERQNLFMSQL-SKNHQVFITT 325 >UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=Desulfitobacterium hafniense RepID=RECF_DESHD Length = 365 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 172/367 (46%), Gaps = 18/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRN + ++ PG L G NG GKT++LE IY L G+++R + + Sbjct: 1 MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLITP 119 R + F L+G + R+ + L Q K ++I+ K++E + + +P Sbjct: 61 ARWGENEFHLYGDFIVQRRK--LRLESHYQDKRKIIKINQIPCRKLSEYVGTINVVFFSP 118 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQL 174 + ++ GGP RR FLD + + ++L+Q+NA L+Q ++ Q+ Sbjct: 119 DDLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKSQIAQI 178 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETE---- 229 W+++++ + +I R E++ ++ + Q + LT + + E Sbjct: 179 ELWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGKNNLEEALA 238 Query: 230 -YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + ++L + + GPH+ D+ + + S+GQ + ++ + +LA+ E Sbjct: 239 AFPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSARLYGSQGQQRSIVLSTKLAELEV 298 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + +E G L L+DD SELD RR L K+ Q Q ++ SAE ++ S + Sbjct: 299 IRQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ-QTIMTMTSAE---TLTQRASLLL 354 Query: 349 TVEKGKI 355 VEKG+I Sbjct: 355 KVEKGQI 361 >UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML39_ANATD Length = 353 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/341 (26%), Positives = 145/341 (42%), Gaps = 25/341 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FR + N +VG N SGKTS+LEA+Y G++F+S I Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKSRDID-A 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + F L + + E + DK D ++ I+ K++EL P+ Sbjct: 60 INFDSFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFVFFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P +S R L RNA L+ + + + +D + Sbjct: 120 ATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLKSYDKKDIIDVYDMQ 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWE----------KETEY 230 + L I R E ++ + FSL F + E E EY Sbjct: 180 ISQLGFLIFQKRQEVINKLSIEAQKI-------FSLVFENKSMLELKYMPSIAASTEKEY 232 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + +++N E+D L YT G H+ D I D P + S GQ+KL ++ LA + Sbjct: 233 YKEIKKNIEKDLSLGYTTKGVHRDDFEILIDKKPAINFASEGQIKLAAVSVVLATSLLYS 292 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + ++DD SELD +R L + +Q Q FV++ Sbjct: 293 EP-----VLILDDVFSELDSFKRKNLVKFI--SQYQSFVTS 326 >UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT5_ACIFE Length = 378 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 111/391 (28%), Positives = 170/391 (43%), Gaps = 49/391 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN E + L G N GKT++LE I+T G +FR+ Sbjct: 1 MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRT------ 54 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI------------DGTDGHKVA-- 106 RHE+E G E A +D+ G S++ + + +G+ V Sbjct: 55 -RHEEELPSF-----GAEEWAAELQYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPVTPR 108 Query: 107 ELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR 166 E L+ + L TP+ L+ G P RR FLD P ++ + R+L+QRN L+ Sbjct: 109 EQYGLVNLVLFTPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLK 168 Query: 167 QVTRYE-----QLRPWDKELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTF 218 Q E QL WD L LA I R + +GI A + D +L++ Sbjct: 169 QCRDREKLEEAQLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSY 228 Query: 219 SFQRGWEKETE------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 +RG +ET Y E L D YT+ GPH+ DL I +G P+ Sbjct: 229 VQKRGDGEETVRENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLR 288 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQ 326 S+GQ + AL+L++ EF+ + L+DD SELD RR L + T Q Sbjct: 289 AYGSQGQQRTAALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-VQ 347 Query: 327 VFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 F++ ++ H+ + D + + V +G++ + Sbjct: 348 TFLT-VNDRHLAPV-DGDVAAYRVREGRLEE 376 >UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR Length = 355 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 161/356 (45%), Gaps = 12/356 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L IR FRN S N L G NG GKT++LEA+Y LG+G +FR+ + Sbjct: 1 MILKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDREL 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +++ + + L G + +E +T I + K+ KV ID + +L + + Sbjct: 61 VKNGNDNYFLRGVFREDELNYDTNIEIAYQKKV-KKVFIDKKEVSSRKDLIGRILYVIFL 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P L+ PK RR + + + TA +LLK RN L T+ + ++ Sbjct: 120 PNDTDLVIAEPKLRRDYFNMLISTISLEYLTALIKYNKLLKMRNVCLS--TKPNEAYIYN 177 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQ-FLPEFSLTFSFQRGWE---KETEYAEVL 234 ++ L+ I+ +YS+ + M + K F E +Q E E EY + L Sbjct: 178 SDIAKLSIYIAGENKKYSSILEDKMNEIYKNIFNDENPYAIKYQSTIEDIFNENEYVKKL 237 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 E ++ T G H+A+ + + + S+G+ ++ ++LA + L+ Sbjct: 238 ESTLNEQIRMRTTYFGIHRAEYQFFYKESLSKKFSSQGEKRMFTLIMKLASEKILSEYRR 297 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + + LIDD ELD+ RR + +K T QVF++ E V + EN K+F + Sbjct: 298 KSPILLIDDAMLELDNTRRDNILEYIK-TLGQVFITVTEKEKVKNF--ENGKVFDI 350 >UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=Anaerococcus RepID=C7REZ8_ANAPD Length = 359 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/347 (24%), Positives = 158/347 (45%), Gaps = 11/347 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN ++ + N +G N GKT++LE++Y L + +F+ ++ + Sbjct: 1 MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R Q L G ++ +E I + K D + ++G + +L L + L T Sbjct: 61 VRFGQSQMKLAGTIRKGRSFKEVFIEV---KDNDKSIFVNGVKYDRRKDLRSLFKIVLFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRY--EQLR 175 PE ++ GP RR +D + + + ++L QRN L+ Q Y EQL Sbjct: 118 PEDLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYFKEQLE 177 Query: 176 PWDKELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 +DK L L+ +I R ++ + A++ + + E L++ + TEY E Sbjct: 178 AFDKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIEAKSLTEYEE 237 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 V + D + + G H+ ++ I +G + S+GQ + + +RLA+ + Sbjct: 238 VFRSARDLDFKYLTSQRGIHRDEIEISINGKNTKSFASQGQQRSAILNIRLAEVRLIKEV 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 +G + L DD SELD++R L LK Q+ + + + +D Sbjct: 298 TGDEAVILFDDVFSELDEKRSMFLLENLKGFQTIITATNTKSLEYVD 344 >UniRef50_P49997 DNA replication and repair protein recF n=1 Tax=Azotobacter vinelandii RepID=RECF_AZOVI Length = 364 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 64/164 (39%), Positives = 94/164 (57%), Gaps = 12/164 (7%) Query: 27 FLVGANGSGKTSVLEAIYTLGHGR--AFRSLQIGRVIRHEQEAFVLHGR-LQGEERETAI 83 ++ G NGSGK T + +FRS ++ VI+HEQ A + G+ L + R + Sbjct: 40 YISGPNGSGKRPAYWRRSTCSAWQLSSFRSQRLSPVIQHEQPACTVFGQVLWNDGRVRNL 99 Query: 84 GLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHN 143 G+ +++ G+ ++RIDG + A+LA +P+QLI P+ F LL G PK RR FLDWG FH Sbjct: 100 GVARNRLGELQIRIDGQNVRSAAQLAESLPLQLINPDSFRLLEGAPKVRRQFLDWGVFHV 159 Query: 144 EPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP-----WDKELI 182 E F AW L+ L+QRN+ L R+ ++ P WD+EL Sbjct: 160 EQRFLPAWDRLQTALRQRNSWL----RHGRIDPVSQAAWDRELC 199 Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%) Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID- 339 L++AQG + R + R C+YL+DD SELD++ R L L+ QVF++ + E + + Sbjct: 266 LKIAQGHLVDR-ARRECIYLVDDLPSELDEQHRRALCRLLEELHCQVFITCVDLEALREG 324 Query: 340 -MSDENSKMFTVEKGKIT 356 +D +F V + IT Sbjct: 325 WRTDTPVALFHVNRALIT 342 >UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ8_SORC5 Length = 383 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 158/368 (42%), Gaps = 17/368 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L RL IR+FRN+ D+ +P N + G NG GKTS+LEAIY R+FR+ ++ ++R Sbjct: 17 LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDS------KVRIDGTDGHKVAELAHLMPMQL 116 H A + R + ER A+ +Q + VRIDG +A A P+ Sbjct: 77 H--GAPIASARARFVERRDALQPLAREQTAAVEHKRCVVRIDGNRPPSLASFATRSPVVA 134 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRY 171 E L G RR LD +P + + L+ R+ L Q Sbjct: 135 FHAEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGGGAQAQAS 194 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETEY 230 +L ++ ++ R +A ++ + P+ +L + G + E Sbjct: 195 AELDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPGGGGDAEQ 254 Query: 231 A-EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 A E L RD +GPH+ DL + DG P S+GQ + L AL+ A+ + Sbjct: 255 AREALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVVASQGQHRALTLALKAAETAAI 314 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM-- 347 G + L+DD +SELD +R L L + QVF++ + ++ +S+ Sbjct: 315 ASVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRRDLIVTPGVPSSERRD 374 Query: 348 FTVEKGKI 355 F VE G + Sbjct: 375 FHVEGGAV 382 >UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=Veillonella RepID=D1BQ80_VEIPT Length = 366 Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 147/323 (45%), Gaps = 11/323 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + + +P L G NG+GKT++LE+IY G++ R+ + Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + + + ++ + + +QG +R++ T + EL + + PE Sbjct: 61 LMFNAEEAGIVVKFEKKDTPQKVNIKLFRQGAKDIRLNDTKISQ-KELIGTLNTVIFCPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV--TRYEQLRPWD 178 L+ G P RR FLD ++ RLL+QRNA L++ L WD Sbjct: 120 DLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPLEEWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERN 237 +L +A I R E I + ++ +LT +++ + E Sbjct: 180 LQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYTKEGF 239 Query: 238 FER-------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 +ER DR T+ GPH+ DLR +D ++ S+GQ + + +L+L++ EF+ Sbjct: 240 YERIKAALPQDRHRLSTSVGPHRDDLRFFSDAMDLKKFGSQGQQRTAVLSLKLSELEFIK 299 Query: 291 RESGRRCLYLIDDFASELDDERR 313 E G + L+DD SELD+ RR Sbjct: 300 SEVGEYPVLLLDDVLSELDESRR 322 >UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUX6_CHIPD Length = 360 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/357 (23%), Positives = 166/357 (46%), Gaps = 9/357 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +SL ++ + F+N + + G NGSGKT++L+AIY + +++ + + Sbjct: 2 LSLKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQN 61 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +++ F L G + + +E I T K G + ++ + ++ P +I P+ Sbjct: 62 TQYQTNGFRLEGFMDRDHQEGKIVCTL-KDGKKEFALNDEAYERFSQHIGRYPAVMIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-----TRYEQLR 175 ++ GG + RR +LD PG+ +++L+Q+N L+ + ++ L Sbjct: 121 DAEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQDTLLD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVL 234 +D++L+ + WR + G + + ++ +Q G ++T + E+L Sbjct: 181 IFDEQLVKHGTPVFEWRRAFLPGFIQQVQKLYDYLAGKHETVNIQYQSGLHEQT-FTELL 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 N +D + T G HK DL+ D P++ + S+GQ K + AL+LAQ E + Sbjct: 240 AANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTSASQGQRKSFLFALKLAQFEVIKEHKK 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEHVIDMSDENSKMFTV 350 L L+DD +LD +R L + + + QVF++ A+ ++ ENS F + Sbjct: 300 FPPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDTHADRILAAFKENSDNFQL 356 >UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBH2_9FIRM Length = 357 Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 83/349 (23%), Positives = 161/349 (46%), Gaps = 11/349 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + N +G N GKT++LE+IY L + ++F+S + + Sbjct: 1 MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I ++ L G ++ E + I + ++K+ ++ ++ K +L L + L T Sbjct: 61 IMFNEKEMALDGLIRKNESFKNVKIRVNENKK---EIFVNDIKYDKNKDLKSLFKLVLFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRY--EQLR 175 PE T++ GP +RR +D + + ++L QRN L+ Q ++Y E+L Sbjct: 118 PEDLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELM 177 Query: 176 PWDKELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 +D+++I L +I +R +Y + I A + + S+ + + EY E Sbjct: 178 AFDQQIIRLNYKIYRYREKYISLINNYAKKNHSNLTENKEDLSIIYRPDIVAKDIEEYRE 237 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 +N D + T G + ++ I +G + S+GQ + + ++LA + Sbjct: 238 KFSKNKSYDLKYYRTTAGIQRDEIDIIINGKDSKKFGSQGQQRSAILNIKLANVNLIENT 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 S + + L DD SELD++R L L Q+ + + + +D S Sbjct: 298 SQDKAIILFDDVFSELDEKRSNFLLENLGRFQTIITATNTKSLDRVDKS 346 >UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUF2_9BACT Length = 364 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/366 (26%), Positives = 161/366 (43%), Gaps = 20/366 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++R+ +++FRN +L L PG + G NG GKT+ LEA+ L R+ RS + + Sbjct: 4 ISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSIRSSHTRHLKK 63 Query: 63 HEQEAFVLHG---RLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 E + F L R+ E + ++ +Q + +DG ++ ++ P Sbjct: 64 WESDFFSLRACLDRVTRPELDMSVYYGDKRQ----LSLDGNRVPTTSDFIGVVKSVAFMP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWD 178 E ++ G +RR +LD PG+ + + ++ LK RN L++ + +L WD Sbjct: 120 EDIEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLELDVWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKE-----TEYAE 232 LI ++ R +A ++ ++ L +F L ++ K + Y E Sbjct: 180 DILIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDFLLELQYKNSLAKNATDLRSVYIE 239 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N ERD+ T GPH+ DL I +G + + S GQ +L L+ A E L Sbjct: 240 RLLENRERDKLYKMTHQGPHRDDLLINLNGRSLSNYGSEGQCRLSSLILKAAAVELLLPV 299 Query: 293 SGRRCLY-LIDDFASELDD-ERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 CL LIDD ELD+ RR L + Q + + I A + D K + V Sbjct: 300 EKPDCLILLIDDVLGELDEFSRRAFLKCVSRGDQVFIACTDIPA----GLEDYEYKSYEV 355 Query: 351 EKGKIT 356 + G I+ Sbjct: 356 KAGVIS 361 >UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B043_RUBXD Length = 374 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 98/333 (29%), Positives = 165/333 (49%), Gaps = 23/333 (6%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ---- 65 +FRN A LSPG N LVG N GKT++LEA+ + G + R+ V+R + Sbjct: 12 NFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVVRWGEGFVR 71 Query: 66 -EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAH-LMPMQLIT--PEG 121 EA V+ G G ER A+G + ++ +DG +A A + ++ +T P+ Sbjct: 72 VEARVVDG---GHERRLAVGYAPGSR--KRLTVDGAPVESLARYAAGVAGVRAVTFFPDD 126 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRPW 177 ++ G P RR+FLD P + A + R ++QRN LR++ + L W Sbjct: 127 LRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDGLSSERTLATW 186 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQ-FLPE-FSLTFSFQRGWEKETEYAEVLE 235 D++++ L + RA +A + + + + P+ ++ +S+ E+ YA+ L Sbjct: 187 DRKVVELGLVLLEGRAAAAAPLDEHFRASMRALYGPQKAAVGYSYSATPER---YAQALR 243 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 D + T+ GPH+ DLRI +G + S+GQ +L AL+ A +++ +G+ Sbjct: 244 EAHSADIERGITSVGPHRDDLRILLEGVDLTTYGSQGQQRLATLALKFAARDYIRDATGQ 303 Query: 296 RCLYLIDDFASELDDERRGLLASR-LKATQSQV 327 + L DD SELD+ RR LA L++TQ+ + Sbjct: 304 DPVLLFDDVMSELDERRRDYLAGCFLESTQAVI 336 >UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax=Bacteria RepID=RECF_EUBE2 Length = 363 Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/376 (23%), Positives = 167/376 (44%), Gaps = 34/376 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++DFRN E D+ + N + G N GKT++LE+IY ++ R + + Sbjct: 1 MIVESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREI 60 Query: 61 IRH-EQEAFV-LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R E E+ + L+ G + + L K+K + ++G K EL ++ + + Sbjct: 61 VRFGEDESHIKLNVLKHGMKYRIDMHLKKNKT--KGIAVNGIPIKKAVELFGIINIVFFS 118 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV--TRYEQLRP 176 PE ++ GP RR F+D + + + N ++L QRN L+ + + EQL Sbjct: 119 PEDLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQLMQ 178 Query: 177 ----WDKELI-----------PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ 221 WD +L+ E+I+T ++ + + + + ++P+ + Sbjct: 179 TLDIWDMQLVKYGSLIIKGRKSFIEKINTIISDIHSRLTGGIENIKVCYVPDVDV----- 233 Query: 222 RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 ++ E + + ++D + T GPHK DL + V S+GQ + +L Sbjct: 234 ------NDFEEEVRNSRQKDIKYKVTGKGPHKDDLIFLINDNDVRKYGSQGQQRTAALSL 287 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +L++ E + + L+DD SELD R+ L + + Q+ V+ E I+ Sbjct: 288 KLSEIELVKLVIKDTPVLLLDDVLSELDSNRQNFLINSIGDIQT--IVTCTGLEEFINNR 345 Query: 342 DENSKMFTVEKGKITD 357 +K+F V G + + Sbjct: 346 MNINKIFKVTDGHVVN 361 >UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TP62_9BACT Length = 354 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 98/357 (27%), Positives = 158/357 (44%), Gaps = 24/357 (6%) Query: 9 RDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR---HEQ 65 R+FRN+ET + N L+G NG+GKT++LE+++ L F+SL+ ++ E Sbjct: 9 RNFRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPLVNWNSDES 68 Query: 66 EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 F L G +GE+ + + ++ DG + A + +P P L+ Sbjct: 69 RGF-LEGTFEGEDN---VLIQSSVTSRCAMKCDGKRSN-CASIRFRVPALAFLPGDLALI 123 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLA 185 GGP RR FLD C P + + +R ++ + A L + E + D + P+A Sbjct: 124 EGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGRSTELI---DSVMAPMA 180 Query: 186 EQISTWRAEYSAGIAADMA-DTCKQFLPEFSLTFSFQRGW-----EKETEYAEVLERNFE 239 E I W A +A M ++ LP + + RG Y E + Sbjct: 181 EWI--WTCREKASLAVTMGLESFSDLLPG-PIELALSRGGIGLAGNNPIGYIEGVRSRRR 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 + GPH+ DL I A G SRGQ + A+ +A G + R+ R + Sbjct: 238 AEIGSGRPLVGPHRDDLTIDASGMEASSRFSRGQRRRTSLAMVMAAGWAVERKLRRSPIL 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 L+D+ ASELD R + L ++ Q+F A +AE D+ ++TV +G+IT Sbjct: 298 LLDEVASELDQSGREITVETLVSSGWQIF--AATAED--DLIRWPGSLWTVREGRIT 350 >UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax=Lactobacillaceae RepID=RECF_LACH4 Length = 375 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 178/374 (47%), Gaps = 22/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++++FRN++ D+ P N +G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E L G ++ + + + + ++G KV I+ + K+++ + L +PE Sbjct: 61 IGFGGEYTNLLGHVRKSQVDLTLRVLITQKG-KKVWINRVEQAKLSKYVGQLNAILFSPE 119 Query: 121 GFTLLNGGPKYRRAFLD--WGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------- 170 L+ P RR F+D +G + E +F S +++L Q+N L+Q+ + Sbjct: 120 DLELIKSAPALRRRFMDQEFGQINAEYLYFA--SKYRQVLLQKNNYLKQLAKGKTKDQVF 177 Query: 171 ----YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK 226 +QL E+I + + + Y++ + A ++ ++ + + S + Sbjct: 178 LDVLSDQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEADDT 237 Query: 227 ETEYAEVLERNFERDRQLTY----TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 E + + NFER++ + T GPH+ D+ + DG S+GQ + + +++ Sbjct: 238 VEEIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHLYASQGQQRSIALSVK 297 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA+ + + + + L L+DD SELD R+ L + + ++Q F++ E + Sbjct: 298 LAEIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHG-KTQTFITTTDLEGISWEII 356 Query: 343 ENSKMFTVEKGKIT 356 + +++ ++ GKI+ Sbjct: 357 KKPRVYHMQSGKIS 370 >UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD4_CRYCD Length = 378 Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 160/353 (45%), Gaps = 17/353 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 + LT L++R+FRN + L G L G N +GKTSV+EAI + ++FR+ QIGR Sbjct: 11 LRLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGRA 70 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q A + ++ + R+ + L + ++G R++G + +L L P P+ Sbjct: 71 IRWGQTAASVIATIESDHRQLDLQL-RIEEGKRSYRLNGK-ARRARDLRGLFPAVTFVPD 128 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L G RR LD F S+ +L++Q+N ALR + D+ Sbjct: 129 DLGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTVIDSIDEV 188 Query: 181 LIPLAEQISTWRAE-----------YSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE-- 227 L + QI + R+ Y IA Q++P ++ Q +E+E Sbjct: 189 LTLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWTFEREEC 248 Query: 228 -TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 + L++ ++R + GPH + +G S+GQ + L+ A +LA+ Sbjct: 249 LAIFTSTLQQARLQERLRRKSVVGPHADKVVFLINGHDAAHFASQGQQRSLVLAYKLAEA 308 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 + +R + L+DD SELD +RR S ++ Q+F++ + E+ D Sbjct: 309 AVIEETLNQRPILLLDDVMSELDHQRRDQFMSMIE-EDIQIFITTTNLEYFTD 360 >UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FBAB Length = 374 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 168/356 (47%), Gaps = 29/356 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL +R++R+ DL PG V NG+GKT+++EAI L H R+ R + Sbjct: 1 MWISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + ++R + ++ +G ++ R++ + K+ E+ L+ + PE Sbjct: 61 VNESAQTATVSALVNRDQRHATVEVSIQSKGANRARVNRSP-VKMKEILGLVSCVVFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------L 174 +L+ G P RR+++D P + + ++ +R LKQRNA L+++ L Sbjct: 120 DLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDRDPGLEATL 179 Query: 175 RPWD-------KELI-----PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR 222 W+ EL+ LA+ + + + A IAAD + + + + Sbjct: 180 DIWNMAYADSASELVYGRQRILADIVEPLQKNF-AYIAADARLERQGIQARYDSRIDYSQ 238 Query: 223 GWEKETEYAEVLERNFERDR----QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLM 278 E E E+L ER R + T HGP + DL + P + S G+ L Sbjct: 239 A-ESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAKGYASHGETWSLA 297 Query: 279 CALRLAQGEFLTRESG---RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 A++LA + L+ ++G + + ++DD +ELD RR LASR+ + QVF++A Sbjct: 298 LAMQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITEAE-QVFITA 352 >UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GFJ4_9CORY Length = 374 Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 94/365 (25%), Positives = 157/365 (43%), Gaps = 22/365 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFR+ DL L PG GANG GKT+++E+IY L + + R + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + L + RE + +T + +++ T EL + L +PE Sbjct: 61 VRAGADVAQLAATVVSGGRELVVRMTVKPHAANLAQLNRTRLRHPRELLGGVRCVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------TRYEQL 174 L+ G P+ RR +D P F + +R+LKQRNA L+Q + + L Sbjct: 121 DLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHGML 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGI-----AADMADTCKQFLPEFSLTFSFQRGWEKETE 229 WD +L L ++ T R+ + AA + P S Q +TE Sbjct: 181 DVWDSQLASLGAELVTARSALITRLHPLVEAAYLEIAPHSRPPAISYLTRDQAETTADTE 240 Query: 230 ------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 AE+ R + R L GPHK DL + AP + S G+ AL++ Sbjct: 241 ALLLTSLAEIRPREIDAGRTLI----GPHKDDLGLYLGEAPAKGFASHGETWSFAIALKI 296 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A + G + ++DD +ELD+ RR L S +++ + + +A+ + D++ Sbjct: 297 AVFRLFS-TGGHIPILILDDVFAELDNPRRQALTSMIRSAEQVLITTAVPTDIPTDLTHT 355 Query: 344 NSKMF 348 + + Sbjct: 356 DHTVL 360 >UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY44_9BACL Length = 378 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/382 (23%), Positives = 171/382 (44%), Gaps = 31/382 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + P N LVG N +GKT+++E+I+ L G+++R+ Sbjct: 1 MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + A + + +RE I L + +G S +I G K+ + + + L +PE Sbjct: 61 IMFGETATAMSCIVNKNDRELDIMLGINNKGKS-AKIAGIKKTKLTDFVGELNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------- 173 ++ G P RR F++ + + + + LLKQRN+ L+ + + + Sbjct: 120 DLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEMSLAY 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP----EFSLTFSFQRGWEKETE 229 L +L+ +A I+ R + I+ T K L + +L ++ Sbjct: 180 LETLTSQLVKVALYITKERVSFVRDIS---KLTYKNMLNISNGQETLKIKYKSSVLDALN 236 Query: 230 YAEVLERNFERDRQLT--------------YTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 AE+ + +F + LT T GP DL + + S+GQ + Sbjct: 237 IAEINDESF-TEENLTKVMMKKSFDDIMRGSTKIGPQHDDLEFYINDLDAKMYASQGQQR 295 Query: 276 LLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 ++ +L+LA+ FL ++G + L+DD SELD R+ L + Q F++ S Sbjct: 296 SIVLSLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSIS 354 Query: 336 HVIDMSDENSKMFTVEKGKITD 357 + + + +K+F +E G I++ Sbjct: 355 DIKEDLLKKAKVFKIEDGNISE 376 >UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=Chlorobium/Pelodictyon group RepID=RECF_PROVI Length = 371 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 153/352 (43%), Gaps = 16/352 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +FRN + G N + G NGSGKTS+LE I+ + F S G Sbjct: 1 MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + F+L + ETA+ L+ K+ K++IDG + + +P +P Sbjct: 61 LSFSAGYFLLTALFESSSGIETAVRLSYTKESGKKLQIDGNELKPFSLHIGSIPCISFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-----EQL 174 +++G P RR FLD ++ + +RLL+QRNA L+Q+++ L Sbjct: 121 PEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGKDRSML 180 Query: 175 RPWDKELIPLAEQISTWR----AEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK--ET 228 + W + L A ++ R AE+ + D +P + R E E+ Sbjct: 181 QLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLEPVPES 240 Query: 229 EYAEVLERNFERDRQLTY----TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E E + F+ + Q T GPH+ +L +DG + S+GQ + + +L+LA Sbjct: 241 ELRERFLQRFQENEQQEILRGQTLSGPHRDELIFLSDGRESKRYSSQGQQRTFLISLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++ + G + L+DD SELD +R + L+ + SA H Sbjct: 301 LFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCGQTLISSADLKNH 352 >UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=Leptospira biflexa serovar Patoc RepID=RECF_LEPBA Length = 367 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 14/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ I++FRN E L F +G NG GKT++LE+I L + ++FR ++ Sbjct: 1 MFLKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAI--GLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + + + E E G+ + K++++G + K+++ +++ Sbjct: 61 LRWDTSDTFIRAEFESEGNEYLFEYGIEHSQTKRKKLKVNGEEFKKISDYVGYFRSIVMS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPW 177 P ++ G RR FLD + +RL+KQRNAAL++ + ++ W Sbjct: 121 PPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREIGIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL----PEFSLTFSFQRGWEKETEYAEV 233 D+ +I +I R + +A Q P F +++ + E+ + Sbjct: 181 DEPIIEHDSEIREIRTKTIQSLAGYFHQNLLQLSSGKDPYF---LTYKPNITSKEEHKQK 237 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L N +D+ + YT+ G H+ L I D + S+GQ + + AL+ A + + + Sbjct: 238 LIDNLRKDKAIGYTSCGNHRDTLPIGFDDKDLSGFGSQGQKRSAVIALKTACFQMIRDTT 297 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE---NSKMFTV 350 G + LIDD ELD +RR + L + Q F + E + + + +++ + Sbjct: 298 GEAPVLLIDDIIRELDVKRREYFVN-LISECGQAFFTTTDLEGINEYVGNLTVDKEIYII 356 Query: 351 EKGKI 355 + GK+ Sbjct: 357 DSGKV 361 >UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=Chlorobiaceae RepID=RECF_PROA2 Length = 370 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 35/337 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I++FR + S G N + G NGSGKT++LEAI+ + F + Sbjct: 1 MRLDEIKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + E+F+L + + + + G + ++ + K + L L+P L +P Sbjct: 61 MNFSAESFLLKSLFTSDTGCQYRVHVDFSTNGGKSISLNNSQLEKFSALIGLIPCILFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 T+++G P+ RR FLD + +R+L+QRNA L WD+ Sbjct: 121 AEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALLHS--------SWDR 172 Query: 180 ELIPLAEQISTWR---AEYSAGIAADMADTCKQFLPEFSLTFSFQRGWE----------- 225 A ++ W AE A I + D +F P FS ++ E Sbjct: 173 S--SPAPDMNIWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLG 230 Query: 226 ---KETEYAEVLERNFERDRQLTY-------TAHGPHKADLRIRADGAPVEDTLSRGQLK 275 ++ A + + R ++ + T GPH+ ++ DG+ V+ S+GQ + Sbjct: 231 KALVSSDRAGIADSLMHRFGEIQHQEQVRKQTLLGPHRDEILFYLDGSDVKKYASQGQTR 290 Query: 276 LLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDER 312 + AL++A FL + G + ++L+DD SELD R Sbjct: 291 TFLIALKVALQRFLFDKKGEQSIFLLDDIFSELDQRR 327 >UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BCH3_CHLPD Length = 365 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 148/347 (42%), Gaps = 15/347 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + G L G+NGSGKT++LE I+ + F S+ Sbjct: 1 MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDC 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I + + L GE + + ++ ++ + ++ + K + +P +P Sbjct: 61 IFDSSDYYALQSTCLGENGSDIEVRISFSREKGKTLFVNNNEIKKFSNHVGTIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLR 175 ++++G P RR F+D ++ + +R+L QRNA L Q++ L Sbjct: 121 PEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALLAQISEKKSSINMLP 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL--PEFSLTFSFQRGWEKETEYAEV 233 W + L LA I R E+ + D K+ E + + G + Sbjct: 181 YWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGRYDNIRNIDE 240 Query: 234 LERNFER--DRQLTY------TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 L + R D L Y T+ GPH+ DL + ++ S+GQL+ + L+LA Sbjct: 241 LAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIKKYASQGQLRTFLIGLKLAV 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 ++L + + + L+DD SELD +R + S L+ + S + Sbjct: 301 YDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLGQSIITSTV 347 >UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S6_9DELT Length = 406 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 109/404 (26%), Positives = 160/404 (39%), Gaps = 53/404 (13%) Query: 1 MSLTRLLIRDFRNIETA---------DLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRA 51 M L RL + DFRN A +LA F L G NG+GKT+VLEA+Y R+ Sbjct: 1 MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60 Query: 52 FRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTK------DKQGDS---KVRIDGTDG 102 FR+ ++R Q+ H R++ E + +GL D+ S R+DG Sbjct: 61 FRTTDAKALLRRGQD----HARVELEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGKLV 116 Query: 103 HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRN 162 + + L TPE +L G P RR FLD F + ++LL+ RN Sbjct: 117 RSATDFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRSRN 176 Query: 163 -------AALRQVTRYEQLRPWDKELIPLAEQI--------STWRAEYSAGIAA--DMAD 205 A L + R L +D L + QI R ++A A D D Sbjct: 177 RVLKTDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDRRD 236 Query: 206 TCKQFLPEFSLTFSFQRGWEKETE--------------YAEVLERNFERDRQLTYTAHGP 251 + + R +E++ A+ L RD T GP Sbjct: 237 PGEGGAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTVGP 296 Query: 252 HKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDE 311 H DL +R DG D S+GQ + L+ A ++A+ + GRR L+DD +SELD Sbjct: 297 HLDDLHVRLDGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSELDPR 356 Query: 312 RRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 R L L Q ++ A ++ + + V G+I Sbjct: 357 RSARLFETLAQEVGQCVLTTTDARYIELGAGVERRDLQVRDGQI 400 >UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFD9_9BACT Length = 358 Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 3/316 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++RNI+ A L L FL+G NG GKT++LEAI + RAFR+ + + Sbjct: 1 MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFRARENEIL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + ++ EE E + K+ +V +DG + ++ P ++ E Sbjct: 61 LGPESGQAEIVYEIEHEEFEDSEARVLIKRKGKEVSLDGEAVRRASDFVGRFPAVTLSSE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR F+D + ++ A ++ +++RNA L++ + E +RP++ E Sbjct: 121 DLNIVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALLKRGSSMELMRPFEAE 180 Query: 181 LIPLAEQISTWRAEYSA---GIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 LI A + R + +A+ +T + + + E Y +L+RN Sbjct: 181 LIGPALAVIRKRDSVISELGSMASRFYETLSGSAEAIGVDYKPNAYPDDEDAYRAMLDRN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + T+ GPH+ D + +G D S GQ + + +L A + G Sbjct: 241 RKRDEIMHSTSKGPHRDDFELTLNGRSATDFASDGQQRSIALSLAFATIAYWRERFGVCP 300 Query: 298 LYLIDDFASELDDERR 313 LIDD ELD RR Sbjct: 301 ALLIDDVLGELDPVRR 316 >UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=Sphingobacteriales RepID=D2QG11_9SPHI Length = 368 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 157/359 (43%), Gaps = 35/359 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N E S N LVG NGSGKT++L+A+Y L ++ Q Sbjct: 1 MHLEKLSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSKSAFQSQDAMS 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI-DGTDGHKVAELAHLMPMQLITP 119 I H+ + F++ G + + T ++G KV + D +++E P+ L+ P Sbjct: 61 ILHDTDYFIIDGIFEEHDDRTVQITISLQRGQRKVLMADKKPYERISEHIGRFPVVLVAP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----L 174 L+ + RR F D +P + + +++LKQRN+ L+ Q L Sbjct: 121 NDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLLKLFAERNQVDNDLL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--------WEK 226 +D+ L+ L ++I R ++ +FLP F +++ +E Sbjct: 181 DTYDEPLLELGQKIHDRRRQF-----------IDEFLPGFRSHYAYLSDDREEVTIQYES 229 Query: 227 ETE---YAEVLERNFERDRQLTYTAHGPHKADLRIRADG------APVEDTLSRGQLKLL 277 E +A+ RD L T G HK D + P++ S+GQ K Sbjct: 230 EVSNPGFADEFRHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQPPVPLKKFGSQGQQKTF 289 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAE 335 + AL+LAQ L E + + L+DD +LDD R G L ++ + Q+F++ E Sbjct: 290 VIALKLAQFAQLQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMDEGVFGQLFITDARPE 348 >UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=Opitutaceae RepID=RECF_OPITP Length = 366 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 116/380 (30%), Positives = 167/380 (43%), Gaps = 48/380 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN+ A LA S FLVG NG GKT++LEA L R+FR+ + Sbjct: 1 MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI----DG----TDGHKVAELA-HL 111 I+H Q G + E LT ++ GD+K+ I DG +D +V LA HL Sbjct: 61 IQHGQHT----GAISSE-------LTHEQLGDTKLTIKLRRDGKELWSDATRVTRLADHL 109 Query: 112 --MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 P + + + L+ G P RR +LD + G+ A R L RNA L++ Sbjct: 110 GRFPTVVFSSQDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGN 169 Query: 170 RYE-QLRPWDKELIPLAEQISTWRA------------EYSAGIAADMADTCK-QFLPEFS 215 + +L ++++L P A + R Y A D A+ + P F Sbjct: 170 AADAELDAFEQQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFD 229 Query: 216 LTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 G E A E + RD Q T GPH+ D G +D S GQ + Sbjct: 230 -------GPSTEAWLAR-FESSRGRDAQFRTTLVGPHRDDFSFVVRGTAAKDFASEGQQR 281 Query: 276 LLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 L+ ALRLAQ E+ +SG R + L DD ELD RR + + +SQ+ + S Sbjct: 282 SLVLALRLAQAEWGHEKSGTRPVLLADDVLGELDPLRRRRFWASIDP-ESQILATGTS-- 338 Query: 336 HVIDMSDENSKMFTVEKGKI 355 + D ++F V+ G+ Sbjct: 339 -LPDAELGEWQVFEVKSGEF 357 >UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=Bifidobacteriaceae RepID=RECF_BIFAA Length = 403 Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/372 (23%), Positives = 161/372 (43%), Gaps = 35/372 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + L PG N L G+NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + ++ + +T +G ++ R+DG + ++ +P TPE Sbjct: 61 VEKGHPSATVRANVEDAGEQRTYEITIAARGANRARVDGGKSQYMRDIVGWVPSVSFTPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP---- 176 L++G P RR FL+ P + + + KQR A L+Q++ + P Sbjct: 121 DQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDPEYGR 180 Query: 177 ---------WDKELIPLAEQISTWRA-------EYSAGIAADMADTCKQ----FLPEFSL 216 W + I L Q++ R E I A +A +Q + P F Sbjct: 181 QAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEPSFDE 240 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 F E E + +R + + GP + DL +R + P + S G++ Sbjct: 241 VLLFD---EPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMPAREFASNGEMWT 297 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE- 335 + AL++A E ++ + + + ++DD ++LD+ RRG + Q QV ++ +A Sbjct: 298 MALALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILD-FARRQDQVLITVAAASD 356 Query: 336 ------HVIDMS 341 HVID++ Sbjct: 357 IPQGEAHVIDVA 368 >UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=Meiothermus RepID=C1XG19_MEIRU Length = 357 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 22/331 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL ++FRN+ T A PG +VG N GKT++LEAI L G R+ R+ Sbjct: 1 MRLLRLRQKNFRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAI-ELALGGELRNGLAERI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + EA+ LH ++ + + + + ++G R++ + ELA L L+ P+ Sbjct: 60 AFGQGEAW-LHAEIETQFGNSRLEVKLSREGREH-RLNEAPA-SLRELAQLPGAVLLGPD 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL----RQVTRYE---- 172 L+ G P+ RR FLD + + S R L+QRNA L R +R + Sbjct: 117 DLELVLGPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQGEGA 176 Query: 173 ------QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE 225 + W+ EL+ +I + R A + + ++ P E +L S + Sbjct: 177 PSSTRASIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSETTDPD 236 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + LE N + D Q T+ GPH+ DL I +G SRG+ + + ALRLA+ Sbjct: 237 R---FLQTLEDNLQDDLQRGATSVGPHRDDLVILLEGREAARFGSRGECRSIALALRLAE 293 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLL 316 L + L L+D++ SELD+ RRG L Sbjct: 294 HRLLWQHYEEAPLLLVDEWHSELDNRRRGAL 324 >UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW63_STRM9 Length = 358 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 84/361 (23%), Positives = 166/361 (45%), Gaps = 28/361 (7%) Query: 11 FRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVL 70 FRN+ + LS GFN + G N GKTS +EAIY GR+FR+ + +I+++ + Sbjct: 10 FRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIKYDSNDAKI 69 Query: 71 HGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPK 130 +L +I L K+++ K +G V + ++ + I PE L+ G P Sbjct: 70 FVKLDNTSN-YSINLFKNEKKYFK---NGEKIKYVDYIGDILAVSFI-PEDVELVMGNPS 124 Query: 131 YRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PWDKELIPLAEQIS 189 RR F ++ + + +++LK RN L+ E+L ++++ I + +I Sbjct: 125 IRRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKEELYLIYNEKYIDICAKIL 184 Query: 190 TWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEV--LERN---FER---- 240 R EY + + K F++ +F+ +E + +V +E N E+ Sbjct: 185 KIRKEYVDELNKYLDKNYKDL---FNIEHNFKLIYENFLKIDDVSDIEENKKIIEKLLKS 241 Query: 241 ----DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 D Q+ Y+ +G HK + +G S+G+ K ++ L++++ E + ++ ++ Sbjct: 242 KEIYDIQVGYSNYGVHKDEYIFELNGKNARHYSSQGEKKSIVFILKISEIELIEKKENKK 301 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 ++L+DD S D+ R+ + + Q F+++ ++ K F V++G I Sbjct: 302 PIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTEDLKIV------GKKFDVDRGIIN 355 Query: 357 D 357 + Sbjct: 356 E 356 >UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=Chlorobium limicola DSM 245 RepID=RECF_CHLL2 Length = 363 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 153/351 (43%), Gaps = 16/351 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + FRN + + G N L G NGSGKTSVLE I+ + F + Sbjct: 1 MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F+++GR + +E + + + K+ ++G D ++ +P +P Sbjct: 61 LAFGESFFLINGRFISDALKEDGVKVVYSRDNGKKLTVNGQDLTSFSQHIGSIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ----VTRYEQLR 175 +++NG P RR FLD + + + N +R+L QRNA L Q V E L Sbjct: 121 AEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIEMLN 180 Query: 176 PWDKELIPLAEQISTWRA----EYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET--E 229 ++L A I R E G+ A ++ + P + S T E Sbjct: 181 VLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEEPRITYRSSLVPSVYALTKEE 240 Query: 230 YAEVLERNFERDRQ----LTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + +Q TA GPH+ D+ + ++ S+GQ + + A+++A Sbjct: 241 LINYFREQYAKKKQDEIARGLTAGGPHRDDIVFFLNQHEIKKYASQGQQRSFLIAMKMAL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + + + + + L DD SELD R +L + L A+ QVF++A H Sbjct: 301 YGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALL-ASFGQVFITATEKMH 350 >UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI8_9FIRM Length = 366 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 150/353 (42%), Gaps = 29/353 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT+L + D+RN E + L G + L G N GKT+VLEAI L R+ R+ + Sbjct: 1 MRLTKLRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ +EAF + ++ R+ + ++ +++G + + + KV++ + P+ Sbjct: 61 IKEGKEAFFIKAEIEKTNRKEELQISVNERGKN-LFMYKNPVSKVSDFIGEFNAVMFCPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDK 179 L N P+ RR F+D + ++LLK+RN L+Q E L Sbjct: 120 DMMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLDVVTM 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY--------- 230 +LI + R + + C QF S G + E Y Sbjct: 180 QLIEATMVVMKQRHHF----LKQLLTKCAQFYKRLS-----NDGTQIEVIYESCVPYTED 230 Query: 231 --------AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 E E++ ERD + T+ G HK D + +G V S+GQ + ++ AL+ Sbjct: 231 EQLLRDRLTEKYEKSRERDLAMRVTSVGIHKEDFIFQINGREVATYASQGQKRSILLALK 290 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 + + + L+DD SELD +RR L L + Q+F+S E Sbjct: 291 VGMIYMIEDIIHDYPVLLLDDVFSELDMDRRKELLHSL-PNEVQIFISTTDIE 342 >UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG1_9FIRM Length = 377 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 97/384 (25%), Positives = 166/384 (43%), Gaps = 35/384 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFR----SLQ 56 M + RL +++FRNI + N L G N GKT++ EAI +L G +FR S Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAI-SLCMGPSFRTSRQSSY 59 Query: 57 IGRVIRHEQEAFVLHGRLQ---GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 I + + +E V+ + E I T +++ +G EL ++ Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDSENLIEFTI-CNNKKEIKYNGLAIKSALELYGVLK 118 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-------- 165 + PE L+ G P+ RR +LD P S + LK +N L Sbjct: 119 YVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGINFGDD 178 Query: 166 RQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-------LPEFSLTF 218 V R Q+ W+ L ++ R +Y + + + + L +S F Sbjct: 179 LSVIR-PQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGEELKLKYYSSIF 237 Query: 219 SFQRGWEKE-----TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQ 273 +E EY E L +F+R+ ++ YT G H+ D+ + D V++ S+GQ Sbjct: 238 DSTELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNLYIDNNDVKEFGSQGQ 297 Query: 274 LKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 + AL+LA+ E + R+ + ++DD SELD R+ + + + SQVF++ + Sbjct: 298 QRSTALALKLAEAEII-RQKDETPIMILDDVLSELDAGRQRFVLNHI--INSQVFITCCN 354 Query: 334 AEHVIDMSDENSKMFTVEKGKITD 357 V ++ +N K++ VE G T+ Sbjct: 355 INDVKEL--KNGKVWKVENGIFTE 376 >UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P205_ERYRH Length = 361 Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 84/363 (23%), Positives = 164/363 (45%), Gaps = 14/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRNI +L+ + N VG NG GKT+++E++ L GR+FR + Sbjct: 1 MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++ E + ++ + + + G ++++ K+ E + L PE Sbjct: 61 IQYGNEFLSVIADIEDQNNTQNLKVVLSSAG-KYLQVNQQPLKKMTEFIGRCNVVLFNPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPWDK 179 + P+ RR +D+ + S +LL +RNA L+ + + L + Sbjct: 120 DINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLEILTE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAAD-------MADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 +L+ + I RA++ + ++D+ + + S + G KE ++ Sbjct: 180 KLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLE-GDLKEQLLSK 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 ++ +F+RD T +G H+ D + PV + S+GQ ++L+ A +LA E + + Sbjct: 239 -MQDSFQRDCDFKVTQNGIHRDDFIFMINDIPVVNVSSQGQKRMLIIAFKLAIVELIFQS 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + +DD SELD+ RR + + L + QVF++ ++V S + +F V Sbjct: 298 RKTYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYV--KSKRDKSVFKVVS 354 Query: 353 GKI 355 G + Sbjct: 355 GNV 357 >UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=Tropheryma whipplei RepID=RECF_TROW8 Length = 363 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/373 (24%), Positives = 173/373 (46%), Gaps = 42/373 (11%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++ + +R+FRN E ++ + G N + G NG GKT++ EAIY L + R+ + +I+ Sbjct: 6 ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIK 65 Query: 63 HEQEAFVLHGRLQGE--ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ + ++Q + R IG++ + ++ +++DG K+ +L + + +PE Sbjct: 66 SGEQKAEISAKIQSKYGTRNVYIGISCN--SNNILKVDGKPS-KLRDLVSVFSCVIFSPE 122 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 L+ G P +RR +LD P +S R LKQRN+ L+ + + L Sbjct: 123 DIDLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDI 182 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY----AE 232 W ++L+ L +I R K P+ S +S G E ++ Sbjct: 183 WTQKLVELGLEIVNARKRL-----------LKILNPKISEFYSKLAGVSSTAELFCQSSD 231 Query: 233 VLERNFE--RDRQLT--YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L F+ RDR++ T GPH+ ++ I + P S+G+ L +++L+ E Sbjct: 232 CLIDTFDLLRDREIEEGVTLAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIE- 290 Query: 289 LTRESGRRCLY------LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 L RE+ R LY ++DD + LD R+ LA + + + + + ++++ Sbjct: 291 LMRETKR--LYDPDPVVILDDVFAHLDSYRKQKLAQEVFSYEQTIVTTTDNSDNY----- 343 Query: 343 ENSKMFTVEKGKI 355 S+ VE+GK+ Sbjct: 344 RTSQTLVVEEGKV 356 >UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM4_9FIRM Length = 377 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 150/344 (43%), Gaps = 48/344 (13%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQE- 66 + FRN + LS + G N GKT++LE +Y G +FRS RH++E Sbjct: 3 LHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRS-------RHDEEL 55 Query: 67 ---------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 A V + GE R + + K+ + + +GT ++ H + L+ Sbjct: 56 VKFGETDCAAEVTYCDRYGENRLLVKRIQEGKRTRKQAQRNGT---PISPKEHYGSLNLV 112 Query: 118 --TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--- 172 TP+ L+ G P RR FLD ++ A N R+L+QRN LR E Sbjct: 113 LFTPDDLQLVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLD 172 Query: 173 --QLRPWDKELIPLAEQISTWR------AEYSAGIAADMADTCKQFLPEFSLTFSFQRG- 223 QL WD+ L A I R E +AG+ + T Q + +L++ +R Sbjct: 173 EGQLFVWDEALSRSAAVIVFERLKAMEEIERAAGL---VYGTITQDREKMTLSYLQKRSD 229 Query: 224 -----------WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRG 272 E + Y E L++ D YT+ GPH+ DL I +G P+ S+G Sbjct: 230 GEGVPPKGLSLSEWQAFYQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLRSFGSQG 289 Query: 273 QLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLL 316 Q + AL+L++ EF+ + L+DD SELD+ RR +L Sbjct: 290 QQRTAALALKLSELEFIFHSKEEYPILLLDDVLSELDEGRRRML 333 >UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3F5_9BACT Length = 352 Score = 103 bits (258), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 99/362 (27%), Positives = 157/362 (43%), Gaps = 21/362 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + R+FRN+E A +A PG N L GANG+GKT++LEA++ + AF + Sbjct: 1 MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ + E ERE I + +R+DG + +L + +P P Sbjct: 61 VKWQSEGGASLAAQAAGEREAIIEAV--IMARASLRLDGKL-CRWGDLRNCVPSLTFLPS 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRN--AALRQVTRYEQLRPWD 178 L+ G P RR FLD C P + S +++ + R L TR + Sbjct: 118 DMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHSTRVTE----- 172 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET-EYAEVLERN 237 + + L+ I R E A + + + + LP + + +RG + E R+ Sbjct: 173 ETMANLSAWIWECRLEVIAALREHL-EKWRGLLPR-KIDLNLKRGGSGNADDLLEDFHRS 230 Query: 238 F----ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 ER+R GPH+ DL I +G + LSRGQ + AL + + R Sbjct: 231 CAILAERERASGLPLVGPHRDDLVIGCEGRLASEVLSRGQRRRAALALVMGAASAVERRG 290 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 + L D+ ASELD+ R +L L+ ++ QVF A +AE + + V G Sbjct: 291 RASPVLLFDEVASELDEAGRTVLMECLQHSRWQVF--AATAESALPCF--QGTRWQVSAG 346 Query: 354 KI 355 KI Sbjct: 347 KI 348 >UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=Actinomycetales RepID=RECF_RENSM Length = 398 Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 99/374 (26%), Positives = 166/374 (44%), Gaps = 44/374 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + DFR+ + ADL L PG N +G+NG GKT+++EA+ L + R Q G + Sbjct: 1 MYLEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E ++ G L + + + + ++ RI+ + + E+ L L PE Sbjct: 61 IRFGAEQALIRGNLVRGTQRLGLEVEINASRANRARINRANPVRAREILGLCRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP---- 176 +L+ G P RR FLD P F ++ +R+LKQRNA L+ + + R Sbjct: 121 DLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQAPSA 180 Query: 177 --------WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTF-SFQRGW 224 WD+ A Q+ + R + + +M+ ++ E S + S G+ Sbjct: 181 DFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSSLDGY 240 Query: 225 EKETEYA----------------EVLERNF--------ERDRQLTYTAHGPHKADLRIRA 260 +++++ A E L ++ +R+ + T GPH+ ++ + Sbjct: 241 QEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEVELGL 300 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE---SGRRCLYLIDDFASELDDERRGLLA 317 AP S G+ + ALRLA L + G + ++DD +ELD RR LA Sbjct: 301 GQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSRRSKLA 360 Query: 318 SRLKATQSQVFVSA 331 + A QV V+A Sbjct: 361 -HMVAGAEQVLVTA 373 >UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9C6_9FIRM Length = 366 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/369 (23%), Positives = 165/369 (44%), Gaps = 21/369 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +FRNIE + + + +N G N GKT+ LEA+ +G + R Sbjct: 1 MYIENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNF 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIG-LTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I++ ++ ++ ++ E+ +T I + KDK+ K I+ + EL + + T Sbjct: 61 IKNGEDFSLISAKVIKEDDIDTFIKCVIKDKR---KYEINSSPIKSRTELLREYNLVMFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQL 174 PE ++ G P RR FL+ H P + +A + LKQRNA LR ++ L Sbjct: 118 PEDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASSLL 177 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW--------EK 226 +D+ L + I R I + K+ + + F + + Sbjct: 178 EVYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAKDLKDI 237 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 ++ Y + L+ + D T G H D+ I + + S+GQ + + ++L+ Sbjct: 238 KSLYKKALKNSRNDDLMKGSTTIGVHHDDINIFLNDLDTKKFASQGQQRSISLCMKLSLI 297 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 + L + + L+DD S+LD R+ + + +K TQS F++ ++ + D+ D K Sbjct: 298 KLLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKDTQS--FITCVNYSFLEDIDD--YK 353 Query: 347 MFTVEKGKI 355 ++ +EKG + Sbjct: 354 IYKIEKGNL 362 >UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K3_9FIRM Length = 368 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/363 (25%), Positives = 164/363 (45%), Gaps = 11/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ +++FRN ++ P N ++G N GKT++LE+I L R+ R+++ + Sbjct: 1 MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ RL E E + +G + + I + +E + L P Sbjct: 61 IREGQDFCKAECRLNTEP-EMVLSAVIHGKGKT-LMIHQKPVSRSSEFIGKLNAVLFAPS 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRPWDK 179 L PK RR +D P + A S + +LLK+RN+ L R+ L D+ Sbjct: 119 DLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLEVLDQ 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE-------YAE 232 ++I I R ++ A + ++ T E + + ++TE + Sbjct: 179 QMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYHTITEQTEPDAMREEISR 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N ERDR L T+ G H+ DL + +G V S+GQ ++++ A +L+ +F+ Sbjct: 239 KLLENRERDRILKTTSSGVHRDDLSFQLNGRDVLSYASQGQRRMIVLAWKLSLIDFIAER 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + L+DD SELD ++R L S L + + Q F++ ++ K+ ++ Sbjct: 299 LNELPVLLLDDVLSELDQQKRVNLFS-LISPEIQTFITTTEIAELLPFLSRKPKIAEIDS 357 Query: 353 GKI 355 G+I Sbjct: 358 GQI 360 >UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=Rhizobiales RepID=C3MBZ9_RHISN Length = 470 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 99/373 (26%), Positives = 159/373 (42%), Gaps = 20/373 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +SLTRL + DFRN L L L G NG+GKT+++EAI L GR R V Sbjct: 102 VSLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAAYADV 161 Query: 61 IR-HEQEAFVLHGRLQGEER--ETAIGLTKDKQGDS-KVRIDGTDGHKVAELAHLMPMQL 116 R + F + ++G + E G ++G S ++R++GT V EL + + Sbjct: 162 ARVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHLRVLW 221 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 +TP L G RR FLD +P S R ++ RN R ++ + Sbjct: 222 LTPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRN---RLLSEFRPDPA 278 Query: 177 W----DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS-------FQRGWE 225 W ++E+ L ++ R E + A + + P L+ + ++ Sbjct: 279 WLTAIEREMAGLGVSMALARLEMLGLLTALVERSQGGSFPSAGLSLAGFLDDCHGLPAYD 338 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE-DTLSRGQLKLLMCALRLA 284 E Y +L RD T GPH++DL IR +E + S G+ K L+ L LA Sbjct: 339 LEERYLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLVLA 398 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + +G + L+D+ A+ LD RR L R+ Q F++ + E Sbjct: 399 HARLVGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTALG-ER 457 Query: 345 SKMFTVEKGKITD 357 + TV G++++ Sbjct: 458 ACYLTVANGRVSE 470 >UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERQ3_AMOA5 Length = 370 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/324 (25%), Positives = 147/324 (45%), Gaps = 19/324 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGR-AFRSLQIGR 59 M L +L F+N ++ +L+ + N +VGANG+GKT++L+AI+ L + AF S+ + Sbjct: 1 MLLRKLRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSID-SQ 59 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H + G ++ + D+ ++++G + E P+ L TP Sbjct: 60 NILHGGTQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIVLTTP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR------QVTRYEQ 173 L+ + RR F D +P + +++LK RN+ L+ V R Sbjct: 120 YDTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVDR-AL 178 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL--PEFSLTFSFQRGWEKETE-- 229 + +D +L+PL +Q+ R + + + F+ PE + G+E + + Sbjct: 179 INSYDTQLLPLCKQLYAARKAFVDIFYPILQQQYEYFVDAPEI-----IEMGYESDADDP 233 Query: 230 -YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + + N + D T G H+ D + P++ S+GQ K + ALRLAQ Sbjct: 234 GFEQRFLDNIKEDLLAQRTILGIHRDDYVFMLNNYPIKKFGSQGQQKSFIIALRLAQFAC 293 Query: 289 LTRESGRRCLYLIDDFASELDDER 312 + + G + L L+DD +LD++R Sbjct: 294 IHQALGCKPLLLLDDIFDKLDEQR 317 >UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax=Actinomycetales RepID=RECF_CORJK Length = 425 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 98/410 (23%), Positives = 166/410 (40%), Gaps = 60/410 (14%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + ++R+ E DL LSPG G NG GKT+++EA+ L H + R + Sbjct: 1 MYVSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +E + RE L +G ++ I+ + +L ++ L +PE Sbjct: 61 VRRGEEIANISATAVNNGRELTAHLAIRARGSNRAHINRAAMNSQRDLLGVVRTTLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------------ 168 L+ G P+ RR FLD P ++ + L+QRNA LRQ Sbjct: 121 DLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLVVGAPK 180 Query: 169 ---------------TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE 213 + L WD +L L QI + R + +A + T + P+ Sbjct: 181 GASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQSLAPQ 240 Query: 214 -------FSLTFSFQRG-----------------WEKETEYAEVLE-----RNFERDRQL 244 ++ T + E A +L+ R E +R Sbjct: 241 SRPAHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQEVERGT 300 Query: 245 TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDF 304 T GPH+ D+ + P + S G+ +LRLA F+ R G + ++DD Sbjct: 301 TLL--GPHRDDVNLILGHQPAKGYASHGESWSFALSLRLA-AFFMQRGDGVEPVVILDDV 357 Query: 305 ASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 +ELD RR L L ++ QV ++A E + + + +K++T+++ K Sbjct: 358 FAELDSSRRQHLVD-LISSAEQVLITAAVDEDIPEALRDVAKIYTIDELK 406 >UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax=Actinomycetales RepID=RECF_MICLC Length = 404 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 100/363 (27%), Positives = 160/363 (44%), Gaps = 27/363 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ ADL L+PG L+GANG GKT+++EAI LG ++ R ++ Sbjct: 1 MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + GR+ R A+ + ++V I+ + E ++ + PE Sbjct: 61 VRFGRDRARIAGRVHRGSRTVALKVEILPGRSNRVAINRGASVRAKEGLGILRTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP---- 176 +L+ G P RR LD P A ++ +R+L+QRNA L+ + P Sbjct: 121 DLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGPEEDA 180 Query: 177 ----WDKELIPLAEQISTWRAEYSAGIA-------ADMADTCKQFLPEFSLTFSFQRGWE 225 WD+ L ++ R +A A + + K + T RG Sbjct: 181 TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH 240 Query: 226 KE--------TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 E T+ LE E +R T GPH+ +L + AP S G+ L Sbjct: 241 AEVPAVADLATDMRRTLEAQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL 300 Query: 278 MCALRLAQGEFLTR---ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ALR+A + L + R + ++DD +ELD RR LA+ + + QV V+A + Sbjct: 301 ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAE-QVIVTAAAL 359 Query: 335 EHV 337 E V Sbjct: 360 EDV 362 >UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=Bifidobacterium RepID=B8DV08_BIFA0 Length = 475 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 93/397 (23%), Positives = 161/397 (40%), Gaps = 57/397 (14%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 ++++RL + FR+ L PG N L G NG GKT+++EA+ L G + R+ + Sbjct: 2 ITVSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPL 61 Query: 61 IRHEQEAFVLHGRLQG------------EERETAIGLTKDKQGDSKVRIDGTDGHKVAEL 108 + A + ++ ++R T LT +G ++ R+DG + ++ Sbjct: 62 VEQGFPAAAIRANIEELSEDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYMRDI 121 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 +P+ TP+ L+ G P RR+F+D G+ + KQR A L+Q+ Sbjct: 122 VGRVPLVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHIAKQRAALLKQI 181 Query: 169 --------------TRYEQLRPWDKELIPLAEQISTWRA-------EYSAGIAADMADTC 207 R L W + I +++ R EY I +++D Sbjct: 182 GAQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYFGTIVQELSDVD 241 Query: 208 KQ----FLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAH--------GPHKAD 255 + + P F + Q E E ++ Q YT GP + D Sbjct: 242 QTATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEVARGVNLIGPQRDD 301 Query: 256 LRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGL 315 + I +G P + S G+ L AL++A L R++G R + ++DD ++LD RR Sbjct: 302 VSIELNGMPAREYSSNGESWTLALALKMALYRLLERKAGERPIVVLDDVFAQLDPSRRAK 361 Query: 316 LASRLKATQSQVFVSAISA-----------EHVIDMS 341 + Q QV ++ +A HVID++ Sbjct: 362 IM-EFALRQDQVIITVAAAGDVPELPGDAHAHVIDVA 397 >UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RECF_CHLT3 Length = 368 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 143/347 (41%), Gaps = 17/347 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I FR+ + A G N + G NG+GKT++LEAI+ ++F S Sbjct: 1 MKLFKLSIHGFRSHQDAVFLPHDGINLIYGKNGTGKTNLLEAIHYTCLTKSFLSTSDSDA 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F L LQ + E E+ + + V I+ T +++ P ++P Sbjct: 61 LHFQAGHFELEAVLQSDSENESKVRVYYSPAEGKHVFINKTPLESFSKIVGEFPCVALSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLR 175 L G P+ RR FLD + + +R+L QRN L + +L Sbjct: 121 YDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSSPELD 180 Query: 176 PWDKELIPLAEQISTWR-------AEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET 228 W L LA I R A+Y AD + + S E Sbjct: 181 VWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLNENSFSEA 240 Query: 229 EYAEVLERNFERDR----QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E A+ + FE + + T GPH+ DL + + S+GQ K + L+LA Sbjct: 241 ELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLRKYASQGQHKTFVICLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQS-QVFVS 330 Q ++ + ++L+DD SELD +R L L + +S Q F++ Sbjct: 301 QYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFIT 347 >UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4Q9_JONDD Length = 415 Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 168/403 (41%), Gaps = 52/403 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + D+R+ E D+ +PG N LVG NG GKT+++EAI L + R + Sbjct: 1 MYVSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + ++ R+ +R + L +K R++ + + + ++ + PE Sbjct: 61 IRVGAQRALIRSRVVRGDRAQVVELELLHGKANKARVNRGQPGRASTVLGIVKTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------YEQ 173 L+ G P RR +LD P + ++ ++++QR+A L+Q+ R Sbjct: 121 DLVLVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQLMRGGASHASDAT 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMAD------------------TCKQFLPE-F 214 L WD+ ++ L QI R A +A +A + + FL E Sbjct: 181 LAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRYRPSLESFLDEPM 240 Query: 215 SLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 S + E YAEVL R R+ + GPH+ D+ + PV+ S G+ Sbjct: 241 PAVMSVE---EISVIYAEVLARARRRELERGVCIVGPHRDDVEQTLNNLPVKGYASHGES 297 Query: 275 KLLMCALRLAQGEFLTR--------------------ESGRRCLYLIDDFASELDDERRG 314 A+RLA +T + + ++DD +ELD RR Sbjct: 298 WSYALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDVFAELDVRRRR 357 Query: 315 LLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 LA + A QV ++A A+ V D + +V G +TD Sbjct: 358 QLAD-IAAQARQVIITAAVAQDVPDQL--RGRTLSVTLGAVTD 397 >UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VY05_9ACTO Length = 399 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 101/398 (25%), Positives = 175/398 (43%), Gaps = 44/398 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L PG L+G NG GKT+V+EAI L H + R + Sbjct: 1 MYVSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 +R+ Q A V+ +L +RE + + K ++ R++ K +L + + Sbjct: 61 VRYPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRARLNRAPA-KPRDLLGEIKV 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---- 170 + PE L+ G P RR FLD P + ++ +++LKQR + L+Q+ + Sbjct: 120 IVFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQLGKSLRA 179 Query: 171 -----YEQLRPWDKELIPLAEQISTWRAEYSAGIAAD-------MADTCKQF-------L 211 Y L WD+ LI A Q+ + R + + +A+ K+ L Sbjct: 180 GMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLEYVNSL 239 Query: 212 PEFSLTFSFQRGWEKETEYAEVLE-------RNFERDRQLTYTAHGPHKADLRIRADGAP 264 E+S + + E +VL R+ E R + GPH+ DL + D P Sbjct: 240 AEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLL--GPHRDDLDLWLDELP 297 Query: 265 VEDTLSRGQLKLLMCALRLAQGEFLTRE----SGRRCLYLIDDFASELDDERRGLLASRL 320 V+ S G+ + ALRL E L E + + ++DD SELD +RR L + Sbjct: 298 VKGFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKALLEAI 357 Query: 321 KATQSQVFVSAISAEHVIDM-SDENSKMFTVEKGKITD 357 + + +A++ + ++ +D S F + G + + Sbjct: 358 SGAEQVIITAAVAGDIPTEIEADVLSVNFAKDTGSVCE 395 >UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=Ruminococcaceae RepID=A8SBV6_9FIRM Length = 373 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 38/375 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++++RNI A L + G NG GKT++LEAI+ L G++FR + + Sbjct: 1 MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERE-----------TAIGLTKDKQGDSKVRIDGTDGHKVAELA 109 +R + VL Q + E +G + + ++G + A LA Sbjct: 61 VRRGEAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAALA 120 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 P + P +L+ G P+ RR FLD PG+ ++ R+L+Q+NA LR Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHSA 180 Query: 170 RYEQLRPW----------DKELIPLAEQISTWRAEYSAGIA-------ADMADTCKQFLP 212 ++ RP+ + EL E + R EY +A A+++ ++ Sbjct: 181 NGQE-RPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSI 239 Query: 213 EFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRG 272 ++ F+ AE+L + E + + + G H+ DL + D P S+G Sbjct: 240 RYAAQFA-------PGGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARVYASQG 292 Query: 273 QLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 Q + ++ +L++A+ + +G + L+DD SELD+ R+ L + +K + Q FV++ Sbjct: 293 QQRSVVLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMK--EKQTFVTSC 350 Query: 333 SAEHVIDMSDENSKM 347 + E +M Sbjct: 351 DDTDFLKTDGEVYRM 365 >UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K2_SLAHD Length = 376 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 146/340 (42%), Gaps = 35/340 (10%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 +RDFRN ET L +G NG GKT+VLEAI L +FR +IR + E Sbjct: 10 LRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQELIRWDAEN 69 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 +L + + R+ IGL G + I+G H ++ +P + +P+ LL G Sbjct: 70 SLLKAHMVSDVRDLEIGLAIGPTGKT-YSINGKK-HSGQDVQTTLPSVVFSPDDMLLLKG 127 Query: 128 GPKYRRAFLD-WGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAE 186 YRR LD GC ++ LK L+K +NA L+ + + ++P A Sbjct: 128 SQSYRRDELDAVGCQLSKNHRILKRDYLK-LMKHKNALLKDGVTGPYIESVNDLIVPTAT 186 Query: 187 QISTWRAEYSAGIAADMADTCK-----------QFLPEF-----------SLTFSFQRGW 224 Q+ +R IAA MA+ +++P + + F + Sbjct: 187 QLYLYRVALFKNIAARMAEVYATISAGGERLEMRYIPSWHPMEVSKDVIEDVPFDLGK-Q 245 Query: 225 EKETEYAEVLER----NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 E T E L + +ER R L GPH + +G S+GQ + + A Sbjct: 246 EISTRLEEALHQRAVEEYERGRGLV----GPHADKIMFYLNGRNASLYGSQGQQRSISLA 301 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRL 320 ++A+ + G++ + L+DD ASELD RRG L L Sbjct: 302 WKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELL 341 >UniRef50_B0VFV3 Putative putative DNA repair and genetic recombination (RecF-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV3_9BACT Length = 358 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 153/355 (43%), Gaps = 43/355 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L ++ + +FR+ + +P ++G NG GKT++LEAI G++ R Sbjct: 1 MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIR------- 53 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL---- 116 H++E G+ R ++ ++ D+Q KV + D HK+ ++ L QL Sbjct: 54 FHHDEELLNFGGQF---FRVQSLFIS-DQQTPKKVSLSYADQHKLLKIDELPIRQLSSLF 109 Query: 117 -------ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 PE L++G P++RR + D P + + +++QRNA L++ Sbjct: 110 EVVKVIYCAPEDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNY 169 Query: 170 RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF---------SLTFSF 220 ++ W+ ++ +R Y + +T K P SL Sbjct: 170 SRAEITSWNLSFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKLPL 229 Query: 221 QRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 + E+ ++ +E ER++ L + G H D + G + S+GQ ++ + Sbjct: 230 ESSPEEIIKHLATIE---EREKLLQRSLVGAHLDDYEFKLKGRKMLTYASQGQKRIAVII 286 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELD----DERRGLLASRLKATQSQVFVSA 331 L+L Q + + +G + + L DD +ELD + R + +R QVF+++ Sbjct: 287 LKLIQARLIEKVTGIKPIMLFDDIFAELDTFHSQQIRNCINNRY-----QVFIAS 336 >UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=Bifidobacterium RepID=RECF_BIFLI Length = 412 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/362 (23%), Positives = 151/362 (41%), Gaps = 27/362 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + PG N L G NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I Q + + + + T + +G ++ RI+ + ++ +P TP Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRARINSGSSLYLRDIIGKIPSVSFTP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------ 173 E L++G P RR ++ EPG+ R+ KQR L+Q+ Sbjct: 121 EDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQPMD 180 Query: 174 -----LRPWDKELIPLAEQISTWRA-------EYSAGIAADMADTCKQ----FLPEFSLT 217 L W + I ++ RA E A I AD+A +Q + P F Sbjct: 181 AVLSGLEIWTGQFIEAGVVLTRMRAHVISLLAEPFAAIYADLAGAGEQVTLTYAPSFDEV 240 Query: 218 FSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 F + + +E +R + + GP + D+ + G P + S G++ + Sbjct: 241 LMFN---DPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIPAREFASNGEMWTM 297 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 AL++A E + G + + ++DD ++LDD RR + + Q QV ++ + V Sbjct: 298 ALALKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRAQILDFAR-KQDQVLITVAAEGDV 356 Query: 338 ID 339 D Sbjct: 357 PD 358 >UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=Chlorobaculum RepID=RECF_CHLP8 Length = 368 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 152/349 (43%), Gaps = 22/349 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNF--LVGANGSGKTSVLEAIYTLGHGRAFRSLQIG 58 M L + I +FRN L PG + + G NGSGKTS+LEAI+ R F Sbjct: 1 MRLDSISIANFRN--HTLLEFEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDR 58 Query: 59 RVIRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 ++ +E F + G+ T + + + + ++ ++ + + +P Sbjct: 59 EYLKFGEELFTIRSSFTSGQGIATKVSVAYSPKREKRILVNEQELQTFSSHIGTIPCVTF 118 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL--RQVTRY--EQ 173 TP ++NG P RR F+D + + + +R+L+QRNA L Q R+ Sbjct: 119 TPREMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFIDSA 178 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-------FSLTFSFQRGWEK 226 L +L+ A +I R + + + D Q++PE + + + Sbjct: 179 LDVLTDQLVATATEIVLVRKRFIEHFTSMLGD-VYQWIPEGAEPSILYQSSLGHHENLYE 237 Query: 227 ETEYAEVLERNFE----RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 + + +V FE ++ Q T GPH+ DL+ + + S+GQ + + A++ Sbjct: 238 KDKIQQVFRERFETLKQQELQRRQTLAGPHRDDLQFYLNKREIRKYASQGQQRAFLVAMK 297 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + +L SG + L+DD SELD+ G + L AT+ QV +++ Sbjct: 298 MTLQGYLYEASGEIPITLLDDLFSELDEVVSGTMVETL-ATKGQVIITS 345 >UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax=Bacteroidales RepID=RECF_AZOPC Length = 366 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/309 (26%), Positives = 140/309 (45%), Gaps = 31/309 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +F+NIE L+ SP N+L+G NG GKT++L+A+Y L + +L ++ Sbjct: 1 MIIEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKNHTNLTDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEER--ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I + ++ VLH + ++ E G+ K KQ R + + K++E L+P +++ Sbjct: 61 INYNKDFAVLHAFYKDKDNIEEIYCGI-KLKQRKIFKR-NKKEYKKLSEHIGLIPTVMVS 118 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLR 175 P ++ G RR F D + + + L+QRN LR E+ Sbjct: 119 PNDTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGEEFE 178 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP---EFSLTFSFQRGWEKETEYA- 231 W++++ E I R ++ FLP E+ T S + + EY Sbjct: 179 IWEEQMGTTGEIIYQKRKNFTT-----------DFLPLFKEYYYTIS-DKNETIDLEYVS 226 Query: 232 --------EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E+L ERD+ L +T+ G HK D + + S+GQ K + AL+L Sbjct: 227 HLDDHSLFELLYEKRERDKILGFTSTGIHKDDFNFLLNNFLIRKIGSQGQNKTYLIALKL 286 Query: 284 AQGEFLTRE 292 AQ FL ++ Sbjct: 287 AQFSFLVQK 295 >UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK35_9FIRM Length = 366 Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 154/358 (43%), Gaps = 33/358 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +FRN++ N VG NG GKT+VLEAIY +FR Sbjct: 1 MIVEKIHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFR------- 53 Query: 61 IRHEQEAFVLHG----------RLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAH 110 + +QE F+ G R +G E + + T DK+ +ID V EL Sbjct: 54 -QAKQEDFISFGENFTKVDTFVREKGFENKISFLYTDDKK--KVFKIDDIKIKSVNELYD 110 Query: 111 LMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-- 168 + P+ ++ P +RR F D G+ + + ++ +RN L+ + Sbjct: 111 FSNVIGFFPDELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNL 170 Query: 169 -TRYEQ-LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-----LPEFSLTFSFQ 221 + Y+Q + K+L L +IS R + I ++ +Q E+ S Sbjct: 171 SSFYKQEMNALTKKLALLCYEISMERKKLIDLINKEVNFIHQQLSGETLYIEYESILSNH 230 Query: 222 RGWEKET--EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 + E E E E ++++ D + T+ G HK + + +G + S+GQ + ++ Sbjct: 231 KRSENECLKEILENFSKSYKIDSENKITSFGIHKENFKFILNGNDAKSFSSQGQKRNIII 290 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 +++ Q G + + L+DD SELD++RR + L T +QVF++ V Sbjct: 291 TIKMCQKNIFEEYKGVKPIILLDDLFSELDEDRRYEILEYL--TDNQVFITTTDKSFV 346 >UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M116_ACIFD Length = 346 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/317 (27%), Positives = 142/317 (44%), Gaps = 22/317 (6%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 L I RN++ + +VG+NG GKTS+LE++ + GR+FR+ H++ Sbjct: 4 LRITGLRNLDLTIDHVPDDIIAVVGSNGHGKTSLLESVSVVLAGRSFRT--------HDR 55 Query: 66 EAFVLHGR-----LQGEERETA----IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 A V G + ERE A +G D++G + R+DG + L P+ Sbjct: 56 SALVRVGHDEAVVVADVERELAPPVRVGRRVDREGRLETRVDGQREQRGPSL----PVVS 111 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLR 175 P+ + +GGP+ RR FLD + G +R+L+QR ALR E L Sbjct: 112 FHPDDVQIASGGPEQRRRFLDECVVGLDRGAAIRLRQAERVLRQRTEALRAPVLDEVTLS 171 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 ++ L + +++ RA + IA + L RG E E L Sbjct: 172 ILEERLARASVEVAELRARAAEVIAPHARAVIDEMLMSAGRVVVTYRGAGDEATLLEQLR 231 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 DR+ T+ G H+ D+ I DG P+ S+GQ++ ++ AL++A + + Sbjct: 232 ARRGDDRRRGVTSVGFHRDDVEILLDGEPIRRMGSQGQVRTVVVALKVALARAMEAVTKE 291 Query: 296 RCLYLIDDFASELDDER 312 + ++DD +ELD ER Sbjct: 292 PPVLVLDDLLAELDAER 308 >UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RECF_SYNWW Length = 365 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 163/388 (42%), Gaps = 64/388 (16%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I+DFRN++ + SPG N G N GKT++LEA+Y L G +FRS + + Sbjct: 1 MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI--T 118 I +E + + R +ER +T G RI+ K A H +++I + Sbjct: 61 ISYESSSLQVQARYNHQERIIDSSITYGLDGKV-FRIN----KKRASYNHTDRLRIILFS 115 Query: 119 PEGFTLLNGGPKYRRAFLDW--GCFHNEPGF-------------------------FTAW 151 P+ L+ G P RR FLD+ G NE F F Sbjct: 116 PDDLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFAII 175 Query: 152 SNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQIST----WRAEYSAGIAADMADTC 207 +++ L AA ++R + D+ + + QI+ + Y+ D Sbjct: 176 NDIFMDL----AAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKIN 231 Query: 208 KQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVED 267 L + S ++ E ET E++++ T GPH D+ I + Sbjct: 232 LDILKD-----SLKKQVESET----------EKEKKRKTTLLGPHLDDMHIYLNEQMARL 276 Query: 268 TLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQV 327 S+GQ + ++ L+LA+ + G ++L+D+ +ELDD R L L + Q Sbjct: 277 FASQGQQRNIVICLKLAEIMTFRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQS 336 Query: 328 FVSAISAE--HVIDMSDENSKMFTVEKG 353 F++++ E V+D S +F V+ G Sbjct: 337 FLTSVKLEKFEVMDAS-----IFLVKDG 359 >UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=Zymomonas mobilis RepID=C8WEM6_ZYMMN Length = 376 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 100/381 (26%), Positives = 167/381 (43%), Gaps = 35/381 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + L G L G NG GKT++LEAI L GR FR + + Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 61 IRHEQE-AFVLHGRLQ-----GEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMP 113 +R E E F + +L G IG+ + S+ VR++G A L+ + Sbjct: 61 VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVTTSANA-LSEWLA 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ 173 + +TP L G RR FLD P +S + ++QRN L Y+ Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP--EFSLTFSFQRGWEKETEYA 231 L W L EQI +A + + D + + E L E+ + Sbjct: 180 L--WLDGL----EQIMAEQATHILLARRQLVDLLSEEIAKQEDGLFAKADLALEEGVDSR 233 Query: 232 EVLERNFER---------------DRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQL 274 +++ N E D + T G H+ADL++ A P + S G+ Sbjct: 234 DLVTHNSEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQS-STGEQ 292 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 K L+ L LAQ +T ++G+ + L+D+ A+ LD RR +L L++ QV+++ + Sbjct: 293 KALLLGLVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTG-TE 351 Query: 335 EHVIDMSDENSKMFTVEKGKI 355 + + +++ + F ++KG+I Sbjct: 352 PSLFETAEDAACYFQLDKGEI 372 >UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=Deinococcus RepID=RECF_DEIGD Length = 358 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/338 (28%), Positives = 147/338 (43%), Gaps = 23/338 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHG-----RAFRSL 55 + L+ L ++RN+ L G + G NG+GKT++LEA Y G R + + Sbjct: 4 VQLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVTRLEQLI 63 Query: 56 QIGRVIRHEQEAFVLHGRLQGEE---RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLM 112 Q G E+EA+V QG +E +G +G +++DG K +L Sbjct: 64 QSG-----EREAYVRADVQQGGSLSIQEVGLG-----RGRRHLKVDGVRA-KTGDLPRGS 112 Query: 113 PMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE 172 + I PE L+ G P RRA+LD + + +R + QRNAAL+ + Sbjct: 113 AV-WIRPEDSELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAGEDW- 170 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 + WD L+ L I +R + + Q LT + ET YA Sbjct: 171 AMHVWDDALVKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTLSESTTPET-YAH 229 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + T GPH+ DL + P + SRG+ + + ALR A+ E L + Sbjct: 230 DLAARRAEELSRGATVTGPHRDDLILTLGELPASEYASRGEGRTVALALRCAELELLAEK 289 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 G + + LIDDF +ELD RRG L L A+ Q V+ Sbjct: 290 FGEKPVLLIDDFTAELDPGRRGFLLD-LAASVPQAIVT 326 >UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFZ4_RHOVA Length = 400 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 104/383 (27%), Positives = 155/383 (40%), Gaps = 29/383 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +++ +L + DFRN L G L GANG+GKT+ LEA+ L GR RSL + Sbjct: 7 IAIAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPFPEL 66 Query: 61 IRHEQE---AFVLHGRLQGEERETAIGLTKDKQG------DSKVRIDGTDGHKVAELAHL 111 R A + GE+ G+ G V+ID L + Sbjct: 67 ARSGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGALVRI 126 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 M +TP L G RR FLD +PG+ A S +R ++QRN AL + Sbjct: 127 R-MLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEEFDSP 185 Query: 172 EQL----RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF--SFQRGWE 225 L + +A + A S I A+ P +LT + + Sbjct: 186 PMLTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTLEEQAA 245 Query: 226 KETE----------YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQL 274 +E YA L + +RDR T GPH++DL + A S G+ Sbjct: 246 ALSEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMCSTGEQ 305 Query: 275 KLLMCALRLAQGEFLTRES-GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 K L+ L LAQ + R + G L L+D+ A+ LD RR L S + A +QV+++ Sbjct: 306 KALLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVWMTGTD 365 Query: 334 AEHVIDMSDEN-SKMFTVEKGKI 355 + + +++F V G I Sbjct: 366 LATFTPLRNATETQLFVVSNGTI 388 >UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RECF_THERP Length = 396 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 101/394 (25%), Positives = 165/394 (41%), Gaps = 40/394 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FR L L LVGANGSGKTS++EA+Y L ++FR+ + R Sbjct: 1 MLVRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRA-SLERH 59 Query: 61 IRHEQEAFVL----HGRLQGE-----ERET-AIGLTKDKQGDSKVRIDGTDGH--KVAEL 108 + H L + RL E ER T I L D + ++ DG + E Sbjct: 60 LVHRSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAVEF 119 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 + + L +PE L+ G P+ RR +LD + + A + R+L+ RN+ L+ + Sbjct: 120 VGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEHRNSLLKSL 179 Query: 169 TRY------EQLRPWDKELIPLAEQISTWRAEYSAGIAADMAD-----------TCKQFL 211 EQL WD++L+ + R + A + D +L Sbjct: 180 AERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDTQAQVLTTAYL 239 Query: 212 PEFSLTFSFQRGWEKE----------TEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD 261 P L S Y E LER + + T GPH+ D+ Sbjct: 240 PSIDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGPHRDDVEFLLG 299 Query: 262 GAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLK 321 P+ SRG +L + A +LA+ + R + + L+DD SELD + R L + L Sbjct: 300 EEPLTAFGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQQHRAHLLATLS 359 Query: 322 ATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 A +Q+ ++A ++ + + +F + G++ Sbjct: 360 ALPAQLILTATESDVLETPVLSSLPLFRLNDGRL 393 >UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M5C4_RHOPA Length = 394 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 100/374 (26%), Positives = 154/374 (41%), Gaps = 23/374 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 +TRL + FRN +A L + LVG NG+GKT+ LEA+ L GR R ++ + Sbjct: 21 ITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIAG 80 Query: 63 HEQE-AFVLHGRLQGEERETAIGL-TKDKQGDS----KVRIDGTDGHKVAELAHLMPMQL 116 HE + ++ + ++G +G + +GD + RID A + M Sbjct: 81 HEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMVW 140 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--L 174 +TP L G RR F D + G S L R L+ RN L + + L Sbjct: 141 LTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHWL 200 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK-------- 226 ++E LA ++ R + + +AA M D + F GW + Sbjct: 201 DAIERETAELAIAVAAQRGQTATKLAA-MID-ARGATSAFPSARIMLDGWMESALASEPA 258 Query: 227 ---ETEYAEVLERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALR 282 E Y VL N RD T GPH DL I A A S G+ K L+ L Sbjct: 259 TVVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLV 318 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA + + + L L+D+ + LD RR L L +QV+++ ++ Sbjct: 319 LAHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEIG- 377 Query: 343 ENSKMFTVEKGKIT 356 + +F V+ G+I+ Sbjct: 378 PAAAIFDVDNGRIS 391 >UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=Chloroflexi (class) RepID=RECF_ROSCS Length = 394 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 108/379 (28%), Positives = 168/379 (44%), Gaps = 52/379 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +RDFRN E DL L PG L G N +GKT+VLEAIY L R+ R+ + Sbjct: 1 MYVTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADREL 60 Query: 61 IRHEQEA------------------------FVLHGRLQGEERETAIGLTKDKQGDSKVR 96 +R E + V+ R E E+AIG T + VR Sbjct: 61 VRFEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRR---AEEESAIGATPTIK---TVR 114 Query: 97 IDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKR 156 ID + +L + + L TP L+ G P RR +LD + + ++ ++ Sbjct: 115 ID-RKAVRALDLVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQK 173 Query: 157 LLKQRNAAL------RQVTRY--EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADT-C 207 +++QRN+ L R+ RY ++L WD+EL + R + A C Sbjct: 174 VVQQRNSLLRAWREGRRPLRYADDELAFWDRELAMAGAYLLRERLHAVVDLNALAGPLYC 233 Query: 208 KQFLPEFSLTFSFQR---GWEKETEYAEVLERNF------ERDRQL--TYTAHGPHKADL 256 + + LT ++Q G + T+ + +E+ F RD ++ T GPH+ DL Sbjct: 234 RMSGGDTPLTLAYQSSVAGIDSVTD-SRAIEQAFLAHLTRLRDDEIGRGQTLIGPHRDDL 292 Query: 257 RIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLL 316 I G P+ SRGQ + +L+L + + + +G + L+DD SELD ERR + Sbjct: 293 LIAVGGVPIGAYGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRSHV 352 Query: 317 ASRLKATQSQVFVSAISAE 335 L+ Q V+A + Sbjct: 353 QDILERPDQQTIVTATGTD 371 >UniRef50_C9RJE3 DNA replication and repair protein recF n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJE3_FIBSS Length = 419 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 57/166 (34%), Positives = 86/166 (51%), Gaps = 3/166 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++++ I R++E+ D PG N + G NG GKT++LE+IY L G +FRS ++ +I Sbjct: 2 ISKVFISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELIT 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +Q +L G E RE L +G S+VR +G A P ++ P Sbjct: 62 WKQNELILRGEFYDEGRERMRALRVFSRG-SEVRENGETLKSPAAFFGTCPAVIMQPSDI 120 Query: 123 TLLNGGPKYRRAFLD-WGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 LL GGP RR +LD CF + A N +R+L+QRN L++ Sbjct: 121 ELLRGGPDVRRRWLDEILCFRSSANSL-ALRNYRRVLQQRNKWLKE 165 Score = 48.1 bits (113), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 15/141 (10%) Query: 197 AGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADL 256 AG AAD +D + E L +F R + E+ E L+ T GPH+ DL Sbjct: 282 AGSAADGSDV----VSEEMLRNAFARKL-ADLEFVERLQ---------GMTMAGPHRDDL 327 Query: 257 RIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLL 316 + A G + S+GQ + A+R A + +R + L L+DD +ELD RR + Sbjct: 328 ALCASGYEMRSVGSQGQCRSAAVAMRFAAVDVASRYLTKPIL-LLDDIFAELDVNRRDAV 386 Query: 317 ASRLKATQSQVFVSAISAEHV 337 AS ++ + QV ++ AE + Sbjct: 387 ASLIREKECQVVIATPQAEDL 407 >UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=Erythrobacter RepID=Q2N8V1_ERYLH Length = 361 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/338 (26%), Positives = 149/338 (44%), Gaps = 12/338 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + + RN L + FN LVG NG+GKT+VLEAI L GR R + + Sbjct: 1 MALDRITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDI 60 Query: 61 IR-HEQEAFVLHGRLQ----GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 R F + L GE + + + G +VR++G + V+ L + + Sbjct: 61 ARAGGGGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIG 119 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-- 173 +TP + G RR F+D +P S + +L++RN L + Sbjct: 120 WLTPAMDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTW 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEV 233 L + ++ ++ RA + +A + L + +E+E Sbjct: 180 LDGIEAQMAKHGSALAQSRARLVGVLVETLASHPDEPFARPLLAILTESPFEEEALRV-A 238 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVE-DTLSRGQLKLLMCALRLAQGEFLTRE 292 L N RDR+ T GPH+ DL + G + S G+ K ++ A+ LA GE R Sbjct: 239 LRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLAHGELAAR- 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 GR + L+D+ A+ +D RR L RL+ T +QV+++ Sbjct: 298 -GRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMT 334 >UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B5YFF1_DICT6 Length = 359 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/378 (24%), Positives = 164/378 (43%), Gaps = 44/378 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN++ +L N G N GKT++LE+IY L G++FR+ + Sbjct: 1 MRLIDLRVVNFRNLKNLNLNFF-DVNIFYGENAQGKTNILESIYFLFSGKSFRTKNEREI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR +E+F L G + + + + + + + K++I+ + + ++ L P+ L + E Sbjct: 60 IRWGEESFYLRGDVNWQNQNLVLE-SALSELEKKIKINQKNLKRYRDMVFLFPIILFSQE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 GP RR L+ + A S + L QRN L+ + W+ Sbjct: 119 EIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSG---RDVSVWNST 175 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA--------- 231 LI L I R I + + + + L + L E EY Sbjct: 176 LIKLGSYILFQRLSIVEEIKSKVKEVSNKLLEKNFL----------EIEYISTVPLGDSE 225 Query: 232 EVLERNFE--------RDRQLTYTAHGPHKADLRIRADGAPVEDTL----SRGQLKLLMC 279 E + +NFE +++ YT GPH+ D+ +R ++ L S G+ KL Sbjct: 226 EEIAKNFEVMLKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEKKLGYI 285 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA-ISAEHVI 338 +LAQ E L+ + + + LIDD +LD+ ++ + +K Q+F++ I E + Sbjct: 286 IWKLAQVEILSEKRKEKPILLIDDLFGDLDEYKQKRVWDGIK--DFQIFLTTPIKIEFLR 343 Query: 339 DMSDENSKMFTVEKGKIT 356 D F V+ G++T Sbjct: 344 DFPH-----FLVKNGEVT 356 >UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK7_9FIRM Length = 358 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 154/339 (45%), Gaps = 18/339 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+ + + +FRN ++ L P N + G N SGKT++LEAIY +F++ + + Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 61 IRHEQEAFVLHGRLQGE--ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I + + G + + I +T++ + T+ + H++ L + Sbjct: 61 INFSKNEACILGTYENNCYKDNYRIEITRNNIKKYFINEQKTNSKDFRQARHIV---LFS 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P ++ P RR F+D + + + S +++L +RN L+ L +D Sbjct: 118 PVDLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISKNMSLLEIYD 177 Query: 179 KELIPLAEQISTWR-------AEYSAGIAADMADTCK---QFLPEFSLTFSFQRGWEKET 228 +EL + +I R +Y+ +++ + +L L+ E Sbjct: 178 RELSKIGSKIIIMRLIAIKELNKYANKHYQNLSKNDRLKTTYLSTIPLS---SNEEEIRE 234 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + L+ N +D Q T+ GPH+ D+ + + + S+G+ + ++ +L+L++ + Sbjct: 235 NFYNFLKLNQYKDFQRKNTSIGPHRDDIDFKINDKSTKAFGSQGEQRSVVLSLKLSEFDL 294 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQV 327 + ++ + + L+DD SELD++R L +K TQ+ + Sbjct: 295 IYKKFNDKSILLLDDVFSELDEKRTLYLLDSIKDTQTFI 333 >UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N690_9BACT Length = 353 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/338 (23%), Positives = 138/338 (40%), Gaps = 24/338 (7%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L + +FR+ S G NG+GKT++LE+IY L R+FR++ ++R Sbjct: 4 IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + F L R+ + L + G + I + +E + PE Sbjct: 64 IGERGFELKARVDKGAYHEELRLAQTLAGKRETWIGANRIRRSSEFIREFRAVVFVPEDR 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G +RR F D + G+ TA +N R L QRN AL+Q + ++ E+ Sbjct: 124 NISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQKEQAAVAAAFEPEMA 183 Query: 183 PLAEQISTWRAEYSAGIAADMAD------------TCKQFLPEFSLTFSFQRGWEKETEY 230 A I+ R Y+ I +++ C+ P E EY Sbjct: 184 VNAPLIARQRRIYAKLIEEEVSRMLAEDGNLEFRIVCRTDYP------------ENAAEY 231 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E+LERN +++ + T GP + +G + S GQ++++ L+LA+ + Sbjct: 232 REMLERNRPKEQLRSCTLSGPQLDEFDFLLNGKLLRYYGSTGQIRIISLLLKLAEFNLVK 291 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVF 328 R + L+DD ELD+ + + Q F Sbjct: 292 RAAKEPVAVLVDDVTGELDELNKARFFRTISGADQQFF 329 >UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J1_THEAS Length = 354 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 155/366 (42%), Gaps = 46/366 (12%) Query: 11 FRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTL----GHGRAFRSLQIGRVIRHEQE 66 +RN+E + LSPG N G NG+GKT++LEA G GR + G Sbjct: 11 YRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIPRRGDGSPSPMS 70 Query: 67 AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLN 126 A V GEE E +++ ++IDG+ +EL MP+ P+ L++ Sbjct: 71 AAVAQA--SGEE-EITCAFQFNRR--PLLKIDGS-AVTGSELRRRMPVLAFLPDSAALVD 124 Query: 127 GGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAE 186 G P RR LD C PG+ A + +R ++QR A+LR R+E++ + E Sbjct: 125 GPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLR-CGRWEEM----TLRVMARE 179 Query: 187 QISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA---EVLERNFERDR- 242 + WRA L + S F+ + G E Y E L+R E R Sbjct: 180 AVEIWRAR----------SVVAPRLCQLSQAFASRLGIHLEASYVGQHESLDR-LEPGRF 228 Query: 243 ----------QLTY--TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 ++T+ GPH+ D+ + + G LSRGQ + AL +A + + Sbjct: 229 LEAARSIKGEEMTHRRPRFGPHRDDVVLTSGGHAAGLALSRGQRRRAFAALVMASAQVVY 288 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + R + ++D+ +E+D E R L+A L QV S D + ++ V Sbjct: 289 KALRRGPVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTADLPEAPD----GASLYRV 344 Query: 351 EKGKIT 356 G +T Sbjct: 345 RSGVVT 350 >UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax=Actinomycetales RepID=RECF_RHOOB Length = 410 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 103/402 (25%), Positives = 166/402 (41%), Gaps = 50/402 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +RDFR+ + L L PG VG NG GKT+VLEA+ L + R + Sbjct: 1 MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + RE + L ++ ++ RI+ + + E+ ++ L PE Sbjct: 61 IRTGTAQAFAGATVVNTGRELTVDLELNEGKSNRARINQSPTRRPREILGILQTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNA-------ALRQVTR--- 170 +L+ G P RR +LD P ++ +R+L+QR+A ALR+ +R Sbjct: 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSRGGG 180 Query: 171 ---------YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTF 218 L WD L Q+ R +A +A++ + PE S+ + Sbjct: 181 RPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASIRY 240 Query: 219 SFQRGWEKETEYA-----------EVLERNFERDRQLTYTAH--------GPHKADLRIR 259 G E+ LE F ++ + + GPH+ DL + Sbjct: 241 RSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLELH 300 Query: 260 ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASR 319 P + S G+ +LRLA G L R G + ++DD +ELD +RR LA + Sbjct: 301 LGDTPAKGFASHGESWSFALSLRLA-GFALLRADGSDPVLMLDDVFAELDRKRRRALA-K 358 Query: 320 LKATQSQVFVSAISAEHVIDMSDENSKMFTVE-----KGKIT 356 + QV ++A E V + D + F VE +G+I+ Sbjct: 359 VALDAEQVLITAAVPEDVPEELD--AVRFGVEARDTDRGRIS 398 >UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=Deinococcus deserti VCD115 RepID=RECF_DEIDV Length = 363 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 96/335 (28%), Positives = 143/335 (42%), Gaps = 17/335 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 + L L ++RN+ L+ G + G NG+GKT++LEA Y G + V Sbjct: 4 VQLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVTRLEQLV 63 Query: 61 IRHEQEAFVLH-----GRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 E EA+V G L +E +GL + G ++++DG + +L + Sbjct: 64 QSGEGEAYVRADLESGGSLSIQE----VGLGR---GRRQLKVDGVR-VRAGDLPRGSAV- 114 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 I PE L+ G P RR FLD + + R + QRNAALR + + Sbjct: 115 WIRPEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRSGEEW-AMH 173 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 WD L+ L I +R ++ A+ + L ET YA L Sbjct: 174 VWDDALVKLGSDIMLFRRRALTRLSELAAEANEALGSRKPLVLGLSESTTPET-YAHDLR 232 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + TA GPH+ DL + P + SRG+ + + ALR A+ E L G Sbjct: 233 SRRAEELARGSTATGPHRDDLTMTLGDFPATEYASRGEGRTIALALRRAELELLAERFGE 292 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 + + LIDDF++ELD RR L L A+ Q V+ Sbjct: 293 KPVLLIDDFSAELDPTRRAFLLD-LAASVPQAIVT 326 >UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746B3D Length = 356 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 95/352 (26%), Positives = 148/352 (42%), Gaps = 40/352 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +RDFR A LAL P LVG NG GKTS+LEA L ++ R+ + Sbjct: 1 MLLEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTD------GHKVAELAHLMPM 114 IR + V G + G + A Q + R+ D G + + A ++ M Sbjct: 61 IRFGAQTCVTEGVVGGRKLRVA-------QSPTARRVAVNDSVCPRAGDYLIQSARVVWM 113 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--VTRYE 172 L GG ++RR +LD+ P + A + +R L+ RN L++ V + Sbjct: 114 D---HSDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAVISWR 170 Query: 173 QLRPWDKELIP-----------LAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ 221 Q+ + + L L +++ E G++A + ++P Sbjct: 171 QVDAYGRILAEHGAAIRRCRDELVQRVQEPVTEAHLGLSAGVEPGAVAYVP--------- 221 Query: 222 RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 G+ E A ++E + + +L T G H+ DL + G P S GQ + L AL Sbjct: 222 -GYPGEDLEAALMEVR-DSEARLRTTQVGVHRDDLALTIHGRPAGAFASEGQQRTLCLAL 279 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 +LAQ L G L LIDD ELD RR L + L A ++ + + Sbjct: 280 KLAQARVLEEAQGEPPLLLIDDIFGELDKTRRQALLAYLPAHGQKIITTTFT 331 >UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax=Rhodobacterales RepID=Q28WH8_JANSC Length = 375 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 149/344 (43%), Gaps = 7/344 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++ L + FR+ A + L L G NG+GKT+++EA+ L GR R +IR Sbjct: 16 VSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAAEEIIR 75 Query: 63 H-EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 E + + + G I LT + ++DG ++A LA L+ + + P Sbjct: 76 RPEAIGWKVSAEISGPSINHDITLTAEPGQPRTTQVDGKTAPQIA-LARLLRIVWLVPSQ 134 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDKE 180 L + G + RR FLD P A ++ +++RN LR R R + + Sbjct: 135 DRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPAWYRALEAQ 194 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 + A +I R + I+A F P L + + ++ + E + R Sbjct: 195 MADAAVRIVNGRDDALTRISAAQNGAATAF-PAADLGIETEHPCQTVDDFIQAFEGSRPR 253 Query: 241 DRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 D T GPH+AD+ R G P + S G+ K L+ +L L+ L E+G L Sbjct: 254 DLAAGRTLIGPHRADMSAIYRDKGVPAKQC-STGEQKALLISLILSNARALKAETGTAPL 312 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 L+D+ A+ LD RR L + A ++Q +++ E ++ D Sbjct: 313 VLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGD 356 >UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax=Rhizobiales RepID=Q3SMU8_NITWN Length = 385 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 101/377 (26%), Positives = 154/377 (40%), Gaps = 33/377 (8%) Query: 5 RLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE 64 RL + FRN A LVG NG+GKT+ LEAI L GR R + + Sbjct: 12 RLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLRRATRDDIADNT 71 Query: 65 QE-AFVLHGRLQGEERETAIGLTKDKQGDS------KVRIDGTDGHKVAELAHLMPMQLI 117 + ++ + +QG +G D G+ + RID A + M + Sbjct: 72 GDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRCRIDREPVASAAAFGDHLRMVWL 131 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TP L G RR FLD + S L+R L+ RN L ++ ++ L W Sbjct: 132 TPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLL-EMRHHDDL--W 188 Query: 178 ----DKELIPLAEQISTWRAEYSAGIAADM-ADTCKQFLPEFSLTFSFQRGWEK------ 226 +++ LA ++ RA+ + A + A P S+ GW + Sbjct: 189 CEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLD---GWMENALLTE 245 Query: 227 -----ETEYAEVLERNFERDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMC 279 E Y E+L + RD T GPH DL + P ++ S G+ K L+ Sbjct: 246 PATVVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEA-STGEQKALLI 304 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 L LA + +G L L+D+ + LD +RRG L L +QV++S + Sbjct: 305 GLVLAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPAAFAN 364 Query: 340 MSDENSKMFTVEKGKIT 356 +S S+ F V+ G+IT Sbjct: 365 LS-AGSETFRVDSGRIT 380 >UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPF6_AKKM8 Length = 351 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 28/323 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++RL + DFR + + ++G N GKTS+LEA+ L ++ R+ + G ++ Sbjct: 2 ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTD-GHKVAELAHLMPMQLITPEG 121 H +++F + G L G+ R I D +R++G + + LA P+ + + Sbjct: 62 HGKQSFGIRGELPGQIRR--ILWAPDA---PDLRVNGEPRKDQRSYLADSYPVVWMGNDD 116 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 +L+ G RR ++D+ PG+ A + +R LK RN L+ R + QL + ++ Sbjct: 117 LSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHRHRDKLQLDAYTRQ 176 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE-------TEYAEV 233 L A + + A+ P +L + G +++ +E ++ Sbjct: 177 L-----------ALHGTELRNLRANLLALLAPHIALAYRNIGGRQEQVSIAYRASEEGDL 225 Query: 234 LER---NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 ER + +RD + T +GPH+ DL I +G S GQ + +++LAQ LT Sbjct: 226 YERLCASMDRDIRYGQTQNGPHRDDLDITLNGRNAAQFASEGQQRTTAISMKLAQSSLLT 285 Query: 291 RESGRRCLYLIDDFASELDDERR 313 E+G ++LIDD ELD RR Sbjct: 286 EETGHTPIHLIDDVFGELDPTRR 308 >UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFT6_LIBAP Length = 375 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 L I +FRN + L VG NG GKT++LEAI L GR FR V R Sbjct: 10 LNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVTRIGS 69 Query: 66 EAFV-LHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLITPEG 121 +F R++G E I + + + D VR I+ V EL + + + P Sbjct: 70 PSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWLVPSM 129 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW---- 177 + +G RR FLD F +P + +RL++ RN R +T W Sbjct: 130 DRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRN---RLLTEGYFDSSWCSSI 186 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTC-KQFLPEFSLTFS-FQRGWEKET------E 229 + ++ L +I+ R E +++ + + K+ P L+ + F G ++ E Sbjct: 187 EAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKEE 246 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 YA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 247 YAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHARL 306 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 ++ +G + L+D+ ++ LD+++R L + SQ+F++ + + V D +E +K Sbjct: 307 ISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTG-TDKSVFDSLNETAKFM 365 Query: 349 TVEK 352 + Sbjct: 366 RISN 369 >UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q1_9BACT Length = 351 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 148/343 (43%), Gaps = 15/343 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L R FRN+ ++ S N + G NGSGKT+ LEA+ L F + + + Sbjct: 1 MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60 Query: 61 IRHEQE-AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 E+ AF L G GE T L + +R+DG D ++ P P Sbjct: 61 TCWEENGAFELVGSFDGESGGTVQVLCASR---PSLRLDG-DRATWTDVRLFAPCLSFLP 116 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L+ GGP RR FLD G P + S+ +RL++ + LR + D+ Sbjct: 117 AHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPGDVA---DR 173 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG-----WEKETEYAEVL 234 + PLA + R E+ + ++ + L + RG ++ E ++A L Sbjct: 174 IMKPLAGWLWLKREEFVGALQREL--DAQADLLSCPVQIGLHRGGGGACFDPEEDFAAGL 231 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 ER +R+ GPH+ DL + D SRGQ + AL LA G + + G Sbjct: 232 ERLGPAERKSGLPLVGPHRDDLTLTVSERRAIDYFSRGQRRRAALALILAAGGAVKSQLG 291 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 R + LID+ ASELD+ R + L + QVF + + + Sbjct: 292 RSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSL 334 >UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=Treponema RepID=RECF_TREPA Length = 352 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/355 (22%), Positives = 141/355 (39%), Gaps = 22/355 (6%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +FRN+ + +S F VG NG GKT++LE +Y +G +FR+ R E E + Sbjct: 5 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRT-------RTESELYA 57 Query: 70 LHGR---------LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 H R +GE T +K+ G ++ + EL +P L Sbjct: 58 THARSNEYRVKVMYRGEYTHTVQIFSKN--GKKRIEKNLKKIRTKKELISSIPCILFFHN 115 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + G P+ RR FLD P + L K +N +++ R + L D + Sbjct: 116 DLDFVVGTPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKE-KRVQLLDALDTQ 174 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET--EYAEVLERNF 238 + + + WR + ++ + ++ W + E L + Sbjct: 175 IATVGFDLVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWSDSSVEEIVHSLYKRR 234 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 + D + + GPH+ + A S GQ +L+ LR++Q F T +G+ + Sbjct: 235 KHDLAMGMSMSGPHRDKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVTGKLPV 294 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 L+DD ELD E+R L Q+F + + E E ++++ V +G Sbjct: 295 LLMDDVLLELDPEKRERFMMSLPP-YDQLFCTFLPGEAYRRYGREKTRVYFVSEG 348 >UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B8DYH4_DICTD Length = 340 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 85/339 (25%), Positives = 146/339 (43%), Gaps = 24/339 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + +R+FRN G N + G NGSGKTS+LEA+ L + R+FR + ++ Sbjct: 6 MVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ F ++G++ I ++ K +I DG KV + + + P Sbjct: 66 IKLGEKFFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAIPF 125 Query: 121 GF---TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--VTRYEQLR 175 F +++G RR F D + ++ N ++LL +RN L++ + R + + Sbjct: 126 SFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDR-DYVI 184 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 KE+ PLAE+I R + + K P F + + + + +Y Sbjct: 185 YLAKEMQPLAEKIVEKR-------ETMIKELSKYLDPMFKVEYISEFKGKNIVDYI---- 233 Query: 236 RNFERDRQLTYTAHGPH-KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 E D T GPH D G P + S GQ +LL +L LA + + Sbjct: 234 ---EEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLVLAFRKLIEETKL 290 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 ++L DD + LD LL + QV ++++S Sbjct: 291 YEPVFLFDDPVNVLDPH---LLEKFISHLSGQVIIASLS 326 >UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAS2_9ACTO Length = 398 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 98/371 (26%), Positives = 163/371 (43%), Gaps = 40/371 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L G LVGANG GKT+++EA+ L + R G + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 61 IR---HEQEAF----VLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 +R E EA V+ R+ RE I L + ++ RI+ K E+ ++ Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVTFGREQVIELEIVRGKANRARINRAQ-VKPREILGIVR 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR------- 166 + PE +L+ G P RR+FLD P + S+ R+ +QR A ++ Sbjct: 120 TVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASLR 179 Query: 167 --QVTRYEQLRPWDKELIPLAEQISTWRA-------EYSAGIAADMADTCKQFLPEFSLT 217 Q L WD++ L+ +I+ RA E +A D+AD+ + F + Sbjct: 180 RGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDAS 239 Query: 218 FSFQRGWEKETE-YAEVLERNFERDRQLTYTAH-------------GPHKADLRIRADGA 263 G + + A++ + + + +R L A G H+ DL + Sbjct: 240 VDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLALSLGAM 299 Query: 264 PVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKAT 323 PV+ S G+ + ALRL E L+ + G + ++DD +ELD RR LA+ L + Sbjct: 300 PVKGYASHGESWSVALALRLGAFELLS-DDGDTPILILDDVFAELDSSRREGLAA-LASK 357 Query: 324 QSQVFVSAISA 334 Q+ V+ A Sbjct: 358 AEQIIVTCAVA 368 >UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3C8_SPHTD Length = 412 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 98/377 (25%), Positives = 161/377 (42%), Gaps = 50/377 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRS------ 54 M LT L + +FR+ + L + G N GKTS+LEA+Y L R+ R+ Sbjct: 1 MILTTLQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERET 60 Query: 55 ------LQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGD----SKVRIDGTDGHK 104 +++G A + H R E + + LT D++ +V++DG Sbjct: 61 IHWESGVELGLPPYARVAARIRHNR---HETDVEVVLTVDEERGGALRKRVKLDGRPRRA 117 Query: 105 VAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAA 164 + + L + L TP+ L+ G P RR +LD + + A RLL+QRN+ Sbjct: 118 IDAVGALK-VVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSL 176 Query: 165 LRQV---------TRYEQLRPWDKELIPLAEQISTWRAEYSAG---IAAD----MADTCK 208 L+++ +Q+ WD E++ + R Y +AA+ +A T Sbjct: 177 LKELGGRRPRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTED 236 Query: 209 QFLPEFSLTFSFQRGW-EKETE---------YAEVLERNFERDR----QLTYTAHGPHKA 254 + +S T + E+ E A LE + R R + T GPH+ Sbjct: 237 RLGLRYSTTVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRD 296 Query: 255 DLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRG 314 DL G + SRGQ +L + A +LA+ + +G R + L+DD SELD E + Sbjct: 297 DLHFLLGGHELSAYGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQE 356 Query: 315 LLASRLKATQSQVFVSA 331 L + L + Q+ ++A Sbjct: 357 RLLAVLGSAGCQILITA 373 >UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=Finegoldia magna RepID=B0S419_FINM2 Length = 355 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 83/344 (24%), Positives = 148/344 (43%), Gaps = 27/344 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L + ++RN +L G N +VG N SGKT++LEAI G++F++ + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 61 IRH-EQEA-FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+ E EA V+ G E + I + K + + ++ + + E + Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITI---KSNEKILNVNEAFVNTIKEYNEYFECIVFK 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-----EQ 173 P+ ++ RR FLD + + T ++L +RN ++ RY EQ Sbjct: 118 PDDLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKN-HRYNSYFNEQ 176 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---------FSLTFSFQRGW 224 L+ + +L I R Y + + CK E FS+ + Sbjct: 177 LKALNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDMTD 236 Query: 225 EKETEYA---EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 +K T Y ++LE++ E + T G H+ DL I + + S+ Q++ + ++ Sbjct: 237 QKNTYYKSLRDILEKDLENKQ----TNLGIHRDDLDILINDKQAKFFASQAQVRTAILSM 292 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQS 325 +LAQ + + R + L+DD SELDD R + +K Q+ Sbjct: 293 KLAQLDLSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDFQA 336 >UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMS6_FERNB Length = 339 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 155/353 (43%), Gaps = 29/353 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FR ++ G N + G NG+GKTS+LEAI L + R+FR + + Sbjct: 6 MLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYHL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ F + G++ ++ I + K +I DG+KV + + + P Sbjct: 66 IKFGTNFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAIPF 125 Query: 121 GFT---LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--VTRYEQLR 175 F +++G P RR F D + ++ N ++LL +RNA L + V R E++ Sbjct: 126 SFKDYLMIDGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNALLAEENVDR-EKVL 184 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVL 234 E+ PLAE+I R M + ++L P F + + + + +Y Sbjct: 185 KLANEMQPLAEKIVEKR--------EIMINELSKYLDPMFKVEYVSEFKGKNIADY---- 232 Query: 235 ERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 + D + T GPH D + +G + S GQ +LL +L +A + + Sbjct: 233 ---IDEDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQKRLLYLSLIIAFKKLIEETK 289 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS---AEHVIDMSDE 343 ++L DD + LD LL + QV ++ +S H I+++ E Sbjct: 290 LYEPVFLFDDPGNVLDPH---LLEKFISNLSGQVIIAGLSPLLGAHNINLAKE 339 >UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNH5_9PROT Length = 375 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 138/345 (40%), Gaps = 23/345 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 +TRL + FR+ +A+ G NG+GKT++LEA+ +G GR R +G + R Sbjct: 8 VTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLTR 67 Query: 63 HEQEA--------FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 + GR + R + L + V++DG L + Sbjct: 68 QGSDGGWGIGVDLGTGEGRRRLALRAEGVPLKR------HVQVDGEPVRSTGTLLDSVRF 121 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL 174 Q +TP L P RR FLD P + L+QR AAL L Sbjct: 122 QWLTPAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGWPPAIL 181 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS--------FQRGWEK 226 P + ++ I R + A + + + P L+ S + Sbjct: 182 EPLEAQMAEAGIAIDEARRQTLAALQVNYERVQETAFPRAGLSLSGPFEDIAGIPTLAAR 241 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTL-SRGQLKLLMCALRLAQ 285 YA++LER RDR+ T GPH++DL + G L S G+ K L+ L LA Sbjct: 242 RESYADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAH 301 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 + + L+D+ A+ LD++RR LA+ L VF++ Sbjct: 302 ATASLAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMT 346 >UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=Mobiluncus RepID=C2KT37_9ACTO Length = 436 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 105/399 (26%), Positives = 155/399 (38%), Gaps = 76/399 (19%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + FR+ ++L PG N +GANG GKT+++EA+ L R+ + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 61 I-RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG---------HKV--AEL 108 I R E G ++ + G+T + + D + I+ G HKV +L Sbjct: 61 IFRGTPEETPHAGIIRA---RVSPGITPEPRSD-LLEIEIVSGKANRAMLNRHKVRPRDL 116 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 + L PE L++G P RR+FLD P ++L + L+QR A LR V Sbjct: 117 VGHLSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDV 176 Query: 169 TRYE------QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR 222 R QL WD L+PL ++ R D+ +Q LP + Q Sbjct: 177 ARRHEVLDEIQLEIWDDALVPLFAKVMRSR--------QDITLELQQLLPGIYAQIAGQA 228 Query: 223 GWEKETEYAE--------VLERNFERD------------RQLTY---------------T 247 E ET E V R RD RQ+ + + Sbjct: 229 PHESETNPNEATPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRS 288 Query: 248 AH-----------GPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 H G H+ DL PV+ S G+ ALRLA+ L + G Sbjct: 289 RHLDEARRGVNLCGTHRDDLEFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDA 348 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 + L+DD +ELD RR + ++A SA+ E Sbjct: 349 PVLLLDDVFAELDSHRRAAILGAIEAADQVWITSAVGTE 387 >UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRU4_HIRBI Length = 396 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 98/378 (25%), Positives = 169/378 (44%), Gaps = 27/378 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +++ RL + +FRN + L + L GANG+GKT++LEA+ LG G+ R+ + + Sbjct: 20 LTIQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASLPSL 79 Query: 61 IRHEQEAFVLHG-----RLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAE--LAHL 111 +R E V+ G R+ G +R+ ++GL G ++ R+ D V++ LA L Sbjct: 80 VRVEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTR-RVAKLDDAPVSQTNLAEL 138 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 + + +TP + G RR F D + P +A + ++ +++RNA Q R Sbjct: 139 VRVVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQ-GRM 197 Query: 172 EQ--LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF-------SFQR 222 + L + L I+ RA I A + + P+ L+ + Q Sbjct: 198 DASWLDALEARLAEAGAAIAVNRATALKRIQAAIDARPEGHFPKADLSIAGKFEAMALQG 257 Query: 223 GWEKETEYA--EVLERNFERDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLM 278 + E A + L+ RD T G H++DL++ R P S G+ K L+ Sbjct: 258 DSQAAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQC-STGEQKALL 316 Query: 279 CALRLAQGE-FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 + LA + L + L L+D+ A+ LD RR L L A Q +++ A + Sbjct: 317 MGMILANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDAA-L 375 Query: 338 IDMSDENSKMFTVEKGKI 355 D + ++ F VE G++ Sbjct: 376 FDAFGDRAQRFCVENGQV 393 >UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax=Rickettsia RepID=RECF_RICRO Length = 360 Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 84/355 (23%), Positives = 159/355 (44%), Gaps = 20/355 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L + ++RN + +L L+G NGSGKT++LEAI GR RS ++ V + Sbjct: 6 LHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVCK 65 Query: 63 HEQEAFVLHGRLQGEERETAIGL---TKDKQGDSKVRIDGTDGHKVA--ELAHLMPMQLI 117 ++ ++ LQ + +GL T + S RI + K+A EL+ M + Sbjct: 66 TSEDHCLVKALLQSK-----LGLAEFTTQFKRSSNRRITEYNESKIANNELSKFTSMVWL 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRP 176 TP + G RR FLD ++ +P S + + +RN L + R + L+ Sbjct: 121 TPHMEGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKI 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF------SFQRGWEKETEY 230 ++++ ++ I+ R + + + D +F P+ L+ G E + Sbjct: 181 IEEKMADISNHIANNRLKTLEFMQQAIDDLENEF-PKADLSIDGIVEQKILNGKENIVSF 239 Query: 231 AEV-LERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEF 288 L + +D+ L T+ G HK+D ++ + S G+ K ++ A+ LA+ + Sbjct: 240 ITAELYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNY 299 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 + + + L+D+ LDD+RR L L Q++V+ + E + + +++ Sbjct: 300 AIKLTKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANK 354 >UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQE4_9BACE Length = 367 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/361 (24%), Positives = 140/361 (38%), Gaps = 19/361 (5%) Query: 11 FRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVL 70 FRN + A SP N + G N GKT++LEAI L + R+ +I+ + + Sbjct: 11 FRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASSRRARYDRELIQFGVDHAFV 70 Query: 71 HGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPK 130 + ER+ + + ++ +G ELA ++ PE L+ G Sbjct: 71 KAEVFSRERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLNTVFFCPEDLMLIREGAA 130 Query: 131 YRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQIST 190 RR FLD P + A + +RL +Q+ LR L + Q Sbjct: 131 ERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPSLLDTLDDFNLRMAQTGA 190 Query: 191 WRAEYSAGIAADMADTCKQFLPEFS-------------LTFSFQRGWEKETEYAEVLERN 237 Y A + +T EFS T + G K+ A + + Sbjct: 191 ILIHYRAHFVRRLRETAPPIHREFSGGREELGLKYETVSTVTDPEGGVKDILSALIAHQE 250 Query: 238 FERDRQLT--YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 R +L GPHK DL + G S+GQ + +L+LA E ++G Sbjct: 251 SHRRAELEARQCLSGPHKDDLTVELGGVAARQFASQGQTRTAALSLKLAAREIFYGDTGE 310 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+DD SELD R+ + +R+K QVF++ E + + E K+ + G + Sbjct: 311 WPVLLLDDVLSELDQRRQSFVLNRIKG--GQVFITCCEDEKLEHL--EGGKVLRIHNGAL 366 Query: 356 T 356 Sbjct: 367 V 367 >UniRef50_UPI0001C311AF DNA replication and repair protein RecF n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AF Length = 370 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 157/373 (42%), Gaps = 31/373 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL +R+FR+ TA++ L G + G NG+GKT++L+A+Y GR+ R+ + Sbjct: 1 MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + + ++ + + + ++ DG ++ ++ + + P+ Sbjct: 61 VRFGEQVTRVVVMTEADDGAHELSVAFESGQPKRLMADGVRVERLLDVPGRPLVSVFLPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 L+ G P RRA +D P + L QRNA + ++ L Sbjct: 121 RLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAASLPA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA----- 231 WD+EL A + + AD A + F T + + G + + A Sbjct: 181 WDREL-----------ARHGVALMADRAAAIESVQTRFG-TIAGELGLDGDPAVAYRPRS 228 Query: 232 ---------EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 E L D + +T HGPH+ DL + + + S+GQ +L + AL Sbjct: 229 RAADAGGLEEELAERHASDLERGFTQHGPHRDDLALTRERRELRAYGSQGQQRLTLLALL 288 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA+ E + + L+DD SELD ERRG L L+ Q ++ EHV Sbjct: 289 LAEREAIAATRDAVPVMLLDDVMSELDRERRGRLVELLRGV-GQSVITTTDLEHVPGAEG 347 Query: 343 ENSKMFTVEKGKI 355 + +V G + Sbjct: 348 ADVTRLSVRDGVV 360 >UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=Alphaproteobacteria RepID=Q2W9N3_MAGSA Length = 394 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 99/366 (27%), Positives = 146/366 (39%), Gaps = 48/366 (13%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 ++ RL + DFR T L L GANG+GKT++LEA+ L GR R + Sbjct: 16 AVRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAADIT 75 Query: 62 RHEQEA---FVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLI 117 RH A + + L G IG ++ + + VRIDG K +LA L+ + Sbjct: 76 RHGLAAGSPWAVAATLDGPAGRVEIGTGREAGHERRSVRIDGKPA-KPGDLAGLVSALWL 134 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TP L G RR FLD F PG + +++R LR R Sbjct: 135 TPAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAA------RDG 188 Query: 178 DKELIPLAEQISTWRAEYSAGIAAD--------------MADTCKQFL---PEFSLTFSF 220 + P W A G+A + + C+ L P L Sbjct: 189 GPRVDP------AWMAALEEGMARHGTRVALARVESIRRLDEACRAGLGPFPAAGLAVEG 242 Query: 221 Q-RGW--------EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE---DT 268 + GW E E + L RD GPH++DL +R P + Sbjct: 243 EIEGWLAGGLSPDEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRH--VPKDLPAGQ 300 Query: 269 LSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVF 328 S G+ K ++ ++ LAQG + GR L L+D+ A+ LD+ RR L L A ++Q + Sbjct: 301 CSTGEQKAVLVSIVLAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSW 360 Query: 329 VSAISA 334 ++ A Sbjct: 361 MTGTDA 366 >UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=Gluconobacter oxydans RepID=Q5FUT9_GLUOX Length = 367 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/379 (25%), Positives = 149/379 (39%), Gaps = 37/379 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL + DFRN L G NGSGKT++LEA+ L GR R + + Sbjct: 1 MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD--KQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 R E + + LQ E IG D ++ R+DG + A + +T Sbjct: 61 CRQGAERWGVAATLQSGLDEFRIGTGSDLSEKQRRTFRLDGENIRSQALIGQRFSCVWLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P+ L G RR FLD P + R + RN L + RP + Sbjct: 121 PQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSE-------RPNE 173 Query: 179 KELIP-------------------LAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS 219 E + L E ++ E A+ + C S + Sbjct: 174 AEWLTSIEDSIARHAVAASAARLALIESMNAHPFENDGFSASTLHLDCA-----ISSRLT 228 Query: 220 FQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIR--ADGAPVEDTLSRGQLKLL 277 Q E E L + DRQ + T+ G H+AD + A G P E + S GQ K++ Sbjct: 229 TQPALEVEDWIRNSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPAELS-SSGQQKVM 287 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 + L+ +T+E G L+D+ LD+ RR L L+ ++ V ++ AE Sbjct: 288 LTGTILSHARLMTQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAF 347 Query: 338 IDMSDENSKMFTVEKGKIT 356 ++ ++ F++ G I+ Sbjct: 348 APIAGR-AQFFSIRNGTIS 365 >UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=Nocardioides sp. JS614 RepID=RECF_NOCSJ Length = 420 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 102/404 (25%), Positives = 159/404 (39%), Gaps = 71/404 (17%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFR+ TA++ LSPG +G NG GKT+++EAI L + R + Sbjct: 1 MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + + R + + + ++ R++ + + +L L+ + +PE Sbjct: 61 VRAGADQAVVRAAVVRDGRTAVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 TL+ G P RR FLD P ++ R+L+QRN L+ + Sbjct: 121 DLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGGFA 180 Query: 171 -------------------------------------YEQLRPWDKEL-----------I 182 + L WD L + Sbjct: 181 RKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL 240 Query: 183 PLAEQISTW--RAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEV-LERNFE 239 L E + + +A + A D + P F L R E AEV R E Sbjct: 241 ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDE 300 Query: 240 RDRQLTYTAHGPHKADLRIR-ADGA-----PVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 DR ++ GPH+ +L + G+ PV+ S G+ ALRLA + L R Sbjct: 301 LDRGVSLV--GPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLL-RAD 357 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 G + ++DD +ELD ERR LA L A QV V+A A V Sbjct: 358 GDDPILILDDVFAELDTERRAQLAD-LVAGAEQVLVTAAVAADV 400 >UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCN7_GARVA Length = 433 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 83/386 (21%), Positives = 155/386 (40%), Gaps = 51/386 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++R+ + FR+ +PG N + G NG GKT+++EA+ G G + R+ + Sbjct: 1 MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 61 IRHEQEAFV-----LHGRLQGEERETAIGLTKDK-----------------QGDSKVRID 98 I+ E + ++ + ++ ET GL+ +G ++ I+ Sbjct: 61 IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSNRAHIN 120 Query: 99 GTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLL 158 V ++ L+P+ TP L+ G P RR F+D P + K + Sbjct: 121 SGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHIS 180 Query: 159 KQRNAALRQVTRYEQ---------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQ 209 KQR A L+ + + L W + I ++ R E I + K Sbjct: 181 KQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKS 240 Query: 210 F----------LPEFSLTFSFQR----GWEKETEYAEVLERNFER--DRQLTYTAH--GP 251 F +P F F++ E + E + +F+R D +L + GP Sbjct: 241 FTNEENTEIIYVPSFEEVL-FEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLIGP 299 Query: 252 HKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDE 311 H+ D+ + +D S G+ + A ++A + L ++ + + ++DD ++LD+ Sbjct: 300 HRDDIDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDEN 359 Query: 312 RRGLLASRLKATQSQVFVSAISAEHV 337 RR + Q QVF++ S + Sbjct: 360 RR-IRILNFALNQGQVFITTSSLSDI 384 >UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AUE9_CHLCH Length = 364 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 86/359 (23%), Positives = 147/359 (40%), Gaps = 29/359 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R + FRN + S G + GANGSGKTS+LE I+ + Sbjct: 1 MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60 Query: 61 IRHEQEAFVLHGR-LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + EAF L L + +T +G+ +V +D + + +P +P Sbjct: 61 LSFDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQVIVDRQEVKPFSSHIGRIPTITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 +L++G P RR FLD + + +R+L+QRNA L Q++ E+ ++ Sbjct: 121 YEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQLSSGEK---SNR 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK------------- 226 +PL +T AE SA + F P F + + E+ Sbjct: 178 NTLPLW---TTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCPLH 234 Query: 227 -ETEYAEVLERNFER-------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLM 278 T + E+ + +R + Q T G H+ D+ + ++ S+GQL+ + Sbjct: 235 GNTTFQELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIKRYASQGQLRSFL 294 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 AL+++Q + + L DD SELD R + + LK Q ++A+ + Sbjct: 295 IALKISQAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKEC-GQTIITAVEPRYT 352 >UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6J7_GEMAT Length = 376 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 150/375 (40%), Gaps = 21/375 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L +L +R++RN + DL + G ++G NG GKT++LEA+ LG R+FR + VIR Sbjct: 2 LAQLAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIR 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLITPEG 121 AF + L + + ++ K +DG + ++ +P +P Sbjct: 62 FGAPAFHVRATLHAPAAWHTVSVGYERSSKRKRATLDGVEQPRLTSALGALPSVEFSPAD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--------Q 173 L+ GP RR +LD + P + A + L +RNA L+ R + Sbjct: 122 VALVASGPGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQEAR 181 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEY-- 230 + W+ L I R + A A+ C + +L G + ++ Sbjct: 182 VSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGGDTRSDALT 241 Query: 231 -----AEVLERNFERDRQLT----YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 + L R F + R T GP + DL++ G + S GQ + AL Sbjct: 242 DPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELRTFGSAGQQRSAAIAL 301 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 RL + L G L L+DD +ELD R + L A + + A+ E I + Sbjct: 302 RLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLLAVPREQDIPAA 361 Query: 342 DENSKMFTVEKGKIT 356 T+ G ++ Sbjct: 362 YTRLARRTMRDGVLS 376 >UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=Collinsella RepID=A4ECR8_9ACTN Length = 368 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 142/329 (43%), Gaps = 27/329 (8%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 L + +R+ ++ LAL G L G N +GKT+++EA+ L G +FR ++ Sbjct: 8 LSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAELVHDGV 67 Query: 66 EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKV--AELAHLMPMQLITPEGFT 123 + + RL+G+ R +GL+ + S R +G + A + ++P L P+ Sbjct: 68 GSCKVELRLEGDGRVLDMGLSAEDGKRSFSR----NGKRCSAAGVRGVLPSVLFCPDHLD 123 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDKE-- 180 ++ G RRA LD + S R + QRNA L++ E L W+ Sbjct: 124 MVKRGASVRRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREMLGAWNDSIA 183 Query: 181 -------------LIPLAEQISTWRAEYSAGIAADM--ADTCKQFLPEFSLTFSFQRGWE 225 L LA + T + ++G AA++ A T LP+ +GW Sbjct: 184 RAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGD-LPQVDDREEL-KGWA 241 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 E A + E E R+ T GPH+ ++ G S+GQ + L+ A ++A+ Sbjct: 242 YERMLAALDEHADEEIRR-GVTLVGPHRDEIEFAVAGRSARSFASQGQQRTLVLAWKVAE 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRG 314 G L L+DD SELD ERRG Sbjct: 301 VAVARDVLGTAPLLLLDDVMSELDGERRG 329 >UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRR9_BDEBA Length = 374 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 80/357 (22%), Positives = 146/357 (40%), Gaps = 35/357 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M RL + +FRN L+ SP N +G NG GKT++LEA+Y + G +FR + Sbjct: 1 MIFERLRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFRYSDNSTL 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQ----GDSKVRIDGTDGHKVAELAHLMPM 114 I V+ + + + +GL+K ++ D +V A++ + Sbjct: 61 INTNTSESVIQALITQNDLHYKLKLGLSKSRKVLTLNDKRV--------NSADIRKIFAS 112 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-------- 166 + +PE + + G +RR +D + ++ ++ LK RN L+ Sbjct: 113 VVFSPESLSSIKEGADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQD 172 Query: 167 QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADM------------ADTCKQFLPEF 214 +V L + + + LA ++ R G++ D D ++L Sbjct: 173 KVVTQNLLESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNSSVDISVEYLVSD 232 Query: 215 SLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 SF R E E + L + + + GPHK D+ S+GQ Sbjct: 233 QNAVSFTR-EEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRFFCSQGQQ 291 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + ++ + ++AQ + + G + ++DD SELD +R L + L +Q+FV+ Sbjct: 292 RAIILSFKMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTT 348 >UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW13_9BACT Length = 352 Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 8/303 (2%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQ 65 L +R FR + ++ +PG NF+VG N GKTS+LEA L ++ R ++ VI+HE+ Sbjct: 16 LKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQHER 75 Query: 66 EAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 FV+ G R +++++ K+ +D + E + + L+ Sbjct: 76 RGFVVDGYFG--VRHLQFYFSRERK---KLALDEVEQKSAREYLEIGRVVYFANSDIELV 130 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKELIPL 184 G RR FLD+ + + A + +R L+ RN L+ + R+ ++ +D+ L+ Sbjct: 131 RGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAFDEPLLSA 190 Query: 185 AEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQL 244 ++++ RA+ + + A+ + + + ++ L D +L Sbjct: 191 GQRVAAARAKLIEELQPE-AEKAHRGISGAREQLQLEYVPGGGEDFPATLAAAHNEDARL 249 Query: 245 TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDF 304 T+ GPH+ D+R +G S GQ + L+ AL+L L + + L+DD Sbjct: 250 RQTSAGPHRDDVRFMLNGQS-SSFASEGQQRTLVLALKLGAARLLEQRFESAPVLLLDDI 308 Query: 305 ASE 307 E Sbjct: 309 FGE 311 >UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 Length = 343 Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 92/321 (28%), Positives = 137/321 (42%), Gaps = 30/321 (9%) Query: 5 RLLI---RDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 RLL+ R+FRN+ PG + LVGAN GKTS+L I+ G L + ++ Sbjct: 2 RLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEV--PLGLADLV 59 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQ----GDSKVRIDGTDGHKVAELAHLMPMQLI 117 R +E LH E ET +G + + G +V ++G + L L L+ Sbjct: 60 RFGEEEAWLHA-----EVETELGAYRLEHRLGPGGREVLLNGKR-VSLRALWELPGSVLV 113 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 +P + G + RRA+LD + S ++ L+QRNA L+ E L W Sbjct: 114 SPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAGG--EGLSAW 171 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA-----E 232 D+EL ++I + L E + + + E A Sbjct: 172 DRELARYGDEIVA--------LRRRFLRRFAPILREVHAALAAKEAGLRLEETAGEGVLR 223 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 LE + +R+ T GPH+ DL +G P SRG+ K L ALRLA+ L Sbjct: 224 ALEASRAEERERGQTLVGPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEH 283 Query: 293 SGRRCLYLIDDFASELDDERR 313 G L L+D++ ELD+ RR Sbjct: 284 HGEPPLLLVDEWGEELDEARR 304 >UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z017_9CHLR Length = 409 Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 96/415 (23%), Positives = 169/415 (40%), Gaps = 71/415 (17%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRS------ 54 M LT L + +FRN DL + G LVG N GKTS+LEA+Y L +F + Sbjct: 1 MYLTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQL 60 Query: 55 ---------LQIGRVI--------RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI 97 L + R++ RH E + +Q +T++ +V + Sbjct: 61 INFIEARQPLAVARIVADFSRGTNRHHLEIRL----IQESNGQTSLN-GNSTHVRKEVLL 115 Query: 98 DGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRL 157 DG + + L P+ ++ G P+ RR +L+ + A S + Sbjct: 116 DGVKCKASTAVGQFNAV-LFLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTKA 174 Query: 158 LKQRNAALRQVTRYE----QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQ---- 209 L QRNA L+ + + QL WD++++ Q+ R + T ++ Sbjct: 175 LSQRNALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTRG 234 Query: 210 -------FLPEFSLTFSFQRGWEK-----------------ETEYAEVLERNFERDRQLT 245 + P + F Q G + +AE L + + Sbjct: 235 AEVLRLNYQPSYD-PFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARG 293 Query: 246 YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFA 305 T GPH+ +LR A+G + SRGQ++ M +L++A+ ++ +SG+ + L+D+ Sbjct: 294 VTTIGPHRDELRFLANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDEVL 353 Query: 306 SELDDERRGLLASRLKATQSQVFVSA----ISAEHVIDMSDENSKMFTVEKGKIT 356 +ELD RR L RL ++ + + S+E V E + ++V +G++ Sbjct: 354 AELDANRRQDLLERLTQSEQALLTTTDLDLFSSEFV-----ERATRWSVHEGRLN 403 >UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MEK9_BRAFD Length = 414 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 102/408 (25%), Positives = 154/408 (37%), Gaps = 83/408 (20%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + DFR+ L + PG LVG NG GKT+V+EA++ L + R + Sbjct: 1 MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + ++ R + L ++ R+ G + ++ +L + L PE Sbjct: 61 VHRGESTAIVRASFVRAGRPLQVDLEITPGKSNRARLQGQNVPRLRDLLGEVRAVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKR-------LLKQ-----RNAALRQV 168 L+ P+ RR FLD F P F + ++ R LLKQ R ++ R V Sbjct: 121 DLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSSGRSV 180 Query: 169 -------TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF--- 218 T L WD++L A Y A + + P ++ Sbjct: 181 GGLDPAETASSTLEVWDQQL-----------ARYGAELLRARLHLVNRLSPHLGYSYLRV 229 Query: 219 SFQRGWEKETEY-----------AEVLERNF----------------------------- 238 S G E+ + AE+ R+ Sbjct: 230 STDEGAEQALDLPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAG 289 Query: 239 ---ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 E DR T T GPH+ D+ IR P + S G+ L ALRLA + L E G Sbjct: 290 HDEEIDRGATLT--GPHRDDMEIRLHDFPAKGYASHGESWSLALALRLASYDLLRLEEGD 347 Query: 296 ----RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 + ++DD SELD RR L R+ T SQV ++ + + D Sbjct: 348 LGDGEPILILDDVFSELDTRRRERLG-RIVTTASQVLITTANDGDIPD 394 >UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K4_9ACTN Length = 382 Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 73/339 (21%), Positives = 137/339 (40%), Gaps = 30/339 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L ++RN + ++L L G+N GKT+ +EA+ + G +FR + ++I Sbjct: 5 LHELTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIY 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H + A L + E ++ L + SK + V+ L +MP L +P+ Sbjct: 65 HNENAARLCAVYEDELH--SVELACNISTHSKTYLKNDKKCSVSTLCSVMPSVLFSPDDL 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPWDKEL 181 + +YRR+ +D G+ R L+QRN L+ ++ + L W L Sbjct: 123 LFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDILHAWSVSL 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ------RGWEKETE------ 229 + + R + + + + P L ++ + E + E Sbjct: 183 AHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIKDLEHKVEEPYMYT 242 Query: 230 ---------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 Y + + + + + T GP + D+ +G P S+GQ Sbjct: 243 PQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDDIEFYINGIPARTYASQGQQ 302 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERR 313 + ++ A +LA+ F+ +G+ + L+DD SELD+ RR Sbjct: 303 RSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRR 341 >UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax=Actinomycetales RepID=RECF_MYCA1 Length = 385 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 99/377 (26%), Positives = 154/377 (40%), Gaps = 58/377 (15%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY---TLGHGRAFRSLQI 57 M + L +RDFR+ ADL L PG +G+NG GKT++LEA++ TLG R + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 58 GRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 IR + V+ + + RE A+ L +K R++ + E+ ++ L Sbjct: 61 ---IRAGADRTVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLF 117 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-------- 169 PE L+ G P RR +LD P ++ ++L+QR A L+ ++ Sbjct: 118 APEDLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDR 177 Query: 170 -RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-------- 220 + L WD L AEY A + A D Q PE + Sbjct: 178 GALDTLDVWDSRL-----------AEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAA 226 Query: 221 -------------------QRGWEKETEYAEVLERNF-ERDRQLTYTAHGPHKADLRIRA 260 R + + A + R + E +R + GPH+ DL + Sbjct: 227 SIGYRSSLGAAAAAEVNAGDRDYLEAALLAGLAARRYAELERGVCLV--GPHRDDLELWL 284 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRL 320 + S G+ L +LRLA E L + L L+DD +ELD RR LA+ Sbjct: 285 GEQVAKGFASHGESWSLALSLRLAAYELLRADESDPVL-LLDDVFAELDAARRRALAAVA 343 Query: 321 KATQSQVFVSAISAEHV 337 ++ + QV V+A E + Sbjct: 344 ESAE-QVLVTAAVLEDI 359 >UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax=Alphaproteobacteria RepID=RECF_BRUA2 Length = 384 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 106/374 (28%), Positives = 153/374 (40%), Gaps = 23/374 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +S+ RL + +FRN L L PG L G NGSGKT+++EAI L GR R V Sbjct: 14 VSIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYDDV 73 Query: 61 IRHEQE-AFVLHGRLQGE---ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 R E F +H L + E G +G KVRI+ +L + Sbjct: 74 ARANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRI-AASADDLLDYARILW 132 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LR 175 + P L GG RR FLD + + ++ ++ RN L + +Q L Sbjct: 133 VVPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQWLD 192 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE---TEYAE 232 + ++ L I+ RA+ IAA M + P F F G + E A Sbjct: 193 AIENQMAELGTAIAAARAQAMRLIAA-MIERLPAEGP-FPKADCFLEGALESRIGVEAAL 250 Query: 233 VLERNFE--------RDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMCALR 282 LE +F RDR T GPH+ DL + R P S G+ K L+ L Sbjct: 251 DLEEDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAA-LCSTGEQKALLIGLI 309 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA SG + L+D+ A+ LD RR L L Q F++ + + D Sbjct: 310 LAHARLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTG-TDRALFDALA 368 Query: 343 ENSKMFTVEKGKIT 356 +++ F V G++T Sbjct: 369 GDAQFFNVSAGQLT 382 >UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia mucilaginosa RepID=D2NQA9_9MICC Length = 450 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 155/386 (40%), Gaps = 55/386 (14%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 D+R L LS G +G+NG GKT+++EAI + R G ++R Sbjct: 47 DYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPLVRAGASRAY 106 Query: 70 LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGP 129 + R ++T ++VRI+ + E + L +PE L+ G P Sbjct: 107 IRTRTVRGSQQTVTEFEIAPGQSNRVRINRAAPVRAKEALGIARTVLFSPEDLQLVKGDP 166 Query: 130 KYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------YEQLRPWDKELI 182 RR F+D P S +R+L+QRN+ L+ + R L WD++L Sbjct: 167 AGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDENALSTLSVWDEQLS 226 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS-----------------FQRGWE 225 L Q+ + R ++FLP+ ++ F E Sbjct: 227 TLGAQLLSARFRL-----------LQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSMGE 275 Query: 226 KETEYA---------EVLERNF-ERDR---QLTYTAHGPHKADLRIRADGAPVEDTLSRG 272 + E+A E L R F ER R + T GPH+ D+ + G PV+ S G Sbjct: 276 RSIEHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVKYFASHG 335 Query: 273 QLKLLMCALRLAQGEFLTRES----GRRCLYLIDDFASELDDERRGLLASRLKATQSQVF 328 + AL+LA F+ E G + ++DD +ELD RR L + + + + Sbjct: 336 ESWSFALALKLASW-FVHVEDDSSVGSSPILILDDVFAELDSARRHRLGAMVADAEQVLI 394 Query: 329 VSAISAEHVIDMSDENSKMFTVEKGK 354 A+ ++ ++ D ++ +V G+ Sbjct: 395 TCAVLSDIPEELGDY--RLVSVTAGR 418 >UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIM8_EGGLE Length = 420 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 87/374 (23%), Positives = 158/374 (42%), Gaps = 22/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +++ + +FR+ E DL LVG N +GKT+V+E I L +FR + ++ Sbjct: 3 LAIAHISFLNFRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQL 62 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R L + R+ + + +G K ++G + A+L L+P TP+ Sbjct: 63 VRAGAPFARLTADVTDGSRQLELAVQM-AEGKKKHLLNGKP-KRTADLKGLVPSVTFTPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L G RRA LD + + +++L+ +N L+ + ++ Sbjct: 121 DLELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKDEAPAALVGAMNET 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQ-----------FLPEF----SLTF---SFQR 222 L+ Q+S +RA +AA MA + F+P + L+F +F R Sbjct: 181 LVTCGAQLSCYRAALFEKLAASMASYYAEITDGHERLDAGFVPSWEEHDPLSFATRTFGR 240 Query: 223 GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 +E A+ L R +R GPH + DG S+GQ + ++ A + Sbjct: 241 DEAREA-LADALARRGGEERVRKRALVGPHADRIEFFIDGKNAALFGSQGQQRSVVLAFK 299 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA+ + ++ + L+DD SELD RR L + + Q F++ + + D Sbjct: 300 LAEATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISG-DIQTFITTTNLAYFDDDLL 358 Query: 343 ENSKMFTVEKGKIT 356 +++ +EK + T Sbjct: 359 GGARIVELEKPRKT 372 >UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=Borrelia RepID=A1QZM4_BORT9 Length = 358 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 74/318 (23%), Positives = 129/318 (40%), Gaps = 27/318 (8%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +F+NIE + + G NGSGKT++L+AIY L +F +I + + F Sbjct: 12 NFKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRELITYGKTEFY 71 Query: 70 LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGP 129 L E + IGL+ + G +++++ + L +P + + + G P Sbjct: 72 LKCFYNTEGKAGEIGLSL-RNGKKEIKVNNSIVKDRKNLILNIPSVIFSNYDTDFIIGAP 130 Query: 130 KYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQIS 189 +R F D + + +++L+QRN LRQ + + L+ +++ + A +I+ Sbjct: 131 AKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQGNK-DLLKVYNETFVDFAFEIT 189 Query: 190 TWRAEYSAGIAADMADTCKQFLPEFSLTFS--FQRGWEKETEYA---------EVLERNF 238 R + K F F +S F + E +Y E L+ Sbjct: 190 KMRENF-----------IKHFYEFFKYYYSFIFDVSYSLEIKYLPSVKCSKRDEFLQTLL 238 Query: 239 ERDRQLTY---TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 +++ Y T GPH+ I + S GQ++ L RL Q ++ G Sbjct: 239 LKEQDELYSESTLIGPHRDLYEILSGERVFTHHSSTGQIRALALIYRLIQVIMFNKQFGI 298 Query: 296 RCLYLIDDFASELDDERR 313 + L DD ELD RR Sbjct: 299 APILLFDDVFLELDSMRR 316 >UniRef50_D1R4I7 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4I7_9CHLA Length = 236 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 10/217 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FR+ A SP N + G N GKT++LEAI+ L GR+FR+ QI + Sbjct: 1 MFLHTLHLHQFRSYREAKFTFSPSINLICGPNAIGKTTILEAIHFLMTGRSFRTSQINDL 60 Query: 61 IRHEQEAFVLHGRL--QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+ F + QG E++ I + K+ ++ T + L + ++ Sbjct: 61 IQKGTSYFSIEASFIKQGIEQKLKIFYNGK---ERKIVLNQTPYYSFTHLLGMFYGVCMS 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P+ L+ G P RR+FLD ++P + + R ++QRN L+ + W+ Sbjct: 118 PDDSALIKGAPLMRRSFLDLQLAQSDPLYVHKLTRFTRAMRQRNYLLKG-KNLATIESWE 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS 215 E+ A + T++ E +AA + +Q + S Sbjct: 177 YEMAHAASYL-TFKREV---LAAQLHQNGQQIYEQLS 209 >UniRef50_C0VSL8 Recombination protein F n=1 Tax=Corynebacterium glucuronolyticum ATCC 51867 RepID=C0VSL8_9CORY Length = 267 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 93/199 (46%), Gaps = 6/199 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFR+ DL L PG GANG GKT+++E+IY L + + R + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +A L + RE + +T + +++ T EL + L +PE Sbjct: 61 VRAGADAAQLAATVVSGGRELVVRMTVKPHAANLAQLNRTRLRHPRELLGGVRCVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------TRYEQL 174 L+ G P+ RR +D P F + +R+LKQRNA L+Q + + L Sbjct: 121 DLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHGML 180 Query: 175 RPWDKELIPLAEQISTWRA 193 WD +L L ++ T R+ Sbjct: 181 DVWDSQLASLGAELVTARS 199 >UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=Borrelia hermsii DAH RepID=B2S0E1_BORHD Length = 355 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 86/360 (23%), Positives = 145/360 (40%), Gaps = 29/360 (8%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +F+NI+ + + G NGSGKT++L+AIY L +F +I + + F Sbjct: 9 NFKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELITYGKTEFY 68 Query: 70 LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGP 129 L + E++ I L+ + G +++++ + +L +P + + + G P Sbjct: 69 LKCFYKTREKDAEISLSF-RNGKKEIKVNNSLIKDRKDLILNIPAIVFSNYDTDFIIGEP 127 Query: 130 KYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQIS 189 +R F D + + +R+LKQRN L+Q R + L+ +++ + A +I Sbjct: 128 AKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQGNR-DLLKVYNEAFVDYALEII 186 Query: 190 TWRAEYSAGIAADMADTCKQFLPEFSLTFS--FQRGWEKETEYA---------EVLERNF 238 R + K F F +S F + E +Y E L F Sbjct: 187 RMRENF-----------IKHFYEFFKYYYSLIFDVSYNLEIKYLPSVAYCGRDEFLHLLF 235 Query: 239 --ERDRQLT-YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 E+D L T GPH+ I + S G+ + L RL Q + G Sbjct: 236 LKEKDEFLNESTLIGPHRDLYEILSGERVFTHHSSTGETRALALIYRLVQVIIFNKRFGI 295 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L DD ELD RR + L SQ F + + + I N ++ V+ GKI Sbjct: 296 APILLFDDVFLELDSTRRKRVFDIL-PKDSQCFFTFVDECYDIKQK-SNFIVYKVKNGKI 353 >UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8K6_ATOPD Length = 363 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 83/325 (25%), Positives = 145/325 (44%), Gaps = 33/325 (10%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +FR + ++ LS VG N +GKT+ +EA+ L G +FR +++ + Sbjct: 12 NFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQLLLTDTSEAK 71 Query: 70 LHGRLQGEER--ETAIGLTKDKQGDSKVRIDGTDGHKV--AELAHLMPMQLITPEGFTLL 125 + L G+ R E +T+ ++ SK +G K A+++ + L P+ +++ Sbjct: 72 IEISLTGDGRKLENTCIITERRRQFSK------NGKKCQAADISGTLMSILFNPDDLSMI 125 Query: 126 NGGPKYRRA-FLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDKELIP 183 GG YRR F D+G N+ +F +S + ++QRN L+ E L WD L Sbjct: 126 KGGASYRREEFDDFGRQANK-SYFKVFSTYIKTVEQRNKLLKSDWPDENLLDAWDLSLAR 184 Query: 184 ---------------LAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET 228 LA++ E S G +M + E SL S + E Sbjct: 185 GGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISS--IGEISLEASRE---EISD 239 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 ++ + L D + + GPH+ D+ +G + S+GQ++ ++ AL++A+ Sbjct: 240 QFLQALNEIRIDDIRRQQSTKGPHRDDVEFLIEGKEARNFGSQGQIRTVVLALKMAEVLL 299 Query: 289 LTRESGRRCLYLIDDFASELDDERR 313 G + L L+DD SELD++RR Sbjct: 300 SEEILGEKPLLLLDDVMSELDEDRR 324 >UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT Length = 352 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 69/337 (20%), Positives = 148/337 (43%), Gaps = 14/337 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + + RN L + G NGSGK+++LEAI+ L G++ S + Sbjct: 1 MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD------SKVRIDGTDGHKVAELAHLMPM 114 I++ ++ ++ ++ ++ + L K D K RI+ + A + Sbjct: 61 IQYGKKFCSINADIETKDDRFNMELQIIKNEDFENASIKKARINKV-AKSIQYFAGIFNS 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---- 170 L +P+ L+ G P RR ++D + + + ++ + ++QRN L ++ + Sbjct: 120 VLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFGG 179 Query: 171 YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY 230 ++ + +++ E I R + A I + +T K + + + ++K Sbjct: 180 QGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKT---KLELNYKKNEIS 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E L R+ + GPH+ D I + V + SRG+ + + +L++A+ F+ Sbjct: 237 IERLNEFKSREIAAMTSLLGPHRDDFEIHFNDHNVTNFGSRGEQRSCVLSLKIAEISFIE 296 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQV 327 ++ + + L+DD SELD + + + + Q+ + Sbjct: 297 KKKNDKPVLLLDDIFSELDKKHQTAVFDVINRNQTTI 333 >UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=Bacteria RepID=C3JBV9_9PORP Length = 372 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 92/369 (24%), Positives = 162/369 (43%), Gaps = 18/369 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F++I TA +P N G NG GKT++L+AI+ L R+ + Sbjct: 1 MVLEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLA 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLIT 118 IR +L G + E ET + + G +K + +G +++E P+ +I+ Sbjct: 61 IRIGSTEAILSGDYRANEGEETDRIALRLRMGQAKALSRNGRLYKRLSEHIGRYPLVIIS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P+ + L+ GG RR +LD ++ + R L+QRN L+ + E L Sbjct: 121 PQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEMLLSIV 180 Query: 179 KELIPL-AEQISTWRAEYSAGIAADMADTCKQFLPEF------SLTFSFQRGWEKETE-Y 230 +E + L +I+ RAE+ D T Q E +T ++ E + Sbjct: 181 EEQMALTGVEIAQKRAEF----VRDFTPTFNQLYQEICGDKSECVTLNYLTATAPNRELF 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + L + +R YT +G HK DL + + S GQ K + AL+ + L Sbjct: 237 TQDLRQRRREERATGYTTYGIHKDDLEMLLGENLMRKIGSEGQNKTFLTALKFTEYNLLA 296 Query: 291 RESGRRCLYLIDDFASELDDER-RGLLASRLKATQSQVFVSAISAEH---VIDMSDENSK 346 + R + L+DD +LD ER ++ + Q+F++ + ++ +I+ E+ Sbjct: 297 NKLQCRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIEAQHESFH 356 Query: 347 MFTVEKGKI 355 ++ V+ G I Sbjct: 357 LYAVDHGNI 365 >UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDE2_THET1 Length = 386 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 80/346 (23%), Positives = 148/346 (42%), Gaps = 39/346 (11%) Query: 24 GFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR---HEQEAFVLHGRLQGEER- 79 G ++G N SGKT++LEAIY L ++ R+ +I +E R+ E R Sbjct: 4 GPILVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRR 63 Query: 80 ----ETAIGLTKDK--QGDS---KVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPK 130 + I + K+ QG++ ++R++G + + +L + + + P+ L+ G P Sbjct: 64 RSPIQVEITILKESTAQGENVRKRIRVNGVNKRAI-DLIGQVNVVMFGPQDLDLIVGAPS 122 Query: 131 YRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNA----------ALRQVTRYEQLRPWDKE 180 RR +L+ + + +R++ QRN LR + +Q WD E Sbjct: 123 LRRRYLNITISQLDHQYVRTLQTYERVVLQRNTLIKALSDRAFKLRDESINDQFAYWDNE 182 Query: 181 LIPLAE-------QISTWRAEYSAGIAADMADTCKQFLPEF------SLTFSFQRGWEKE 227 L+ +I + E ++ + + + + ++ + SL E+E Sbjct: 183 LVNQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSIAYKSTLFDSLPLQLDNPREEE 242 Query: 228 TEYAEVLERNFERDRQLT--YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + R +L T GPH+ D+ G V SRGQ + ++ A++LA+ Sbjct: 243 IRDLYIKKIHDLRREELRRGMTLVGPHRDDISFLVGGVDVGVYGSRGQQRSVILAIKLAE 302 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + + +G + L+DD SELD ERR L + Q V+ Sbjct: 303 VDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTT 348 >UniRef50_A8LB19 DNA replication and repair protein recF n=1 Tax=Frankia sp. EAN1pec RepID=A8LB19_FRASN Length = 457 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 78/165 (47%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + DFR+ DL L PG VG+NG GKT+++EAI + + R + Sbjct: 1 MHLTHLSLTDFRSYARLDLVLEPGVTTFVGSNGQGKTNLIEAIGFVATLGSHRVANDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R V+ R+ +R + + ++VR++ + ++A L+ L PE Sbjct: 61 VREGCGQAVVRARIVRGDRAALVEMQIVPGKANRVRLNRAPVARARDVAGLLATVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL 165 L+ G P RR FLD P S+ R+LKQR+A L Sbjct: 121 DLALVKGDPAERRRFLDDLLVARAPRMAAVQSDYDRVLKQRSALL 165 Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 R E +R +T GPH+ DL + +G P S G+ L ALRLA E L R R Sbjct: 340 RTQEIERGVTLV--GPHRDDLLLSVNGRPARGYASHGESWSLALALRLASFELL-RADDR 396 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + L+DD +ELD RR LA+ L A QV V+A Sbjct: 397 EPVLLLDDVFAELDTRRRARLAA-LVADAEQVLVTA 431 >UniRef50_Q1JZF1 Recombinational DNA repair ATPase (RecF pathway)-like n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZF1_DESAC Length = 331 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 73/354 (20%), Positives = 151/354 (42%), Gaps = 36/354 (10%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAF----RSLQIG 58 + ++ +++FR + ++ L+ N + G NGSGKTS++E++Y + R ++ + Sbjct: 2 IEKIKLQNFRCFKELEINLNKK-NIIYGLNGSGKTSLVESLYLCSNYRTLSPKTKNNDLI 60 Query: 59 RVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + E F+ + + + ++K+K K+ +DG + ++ + + + ++ Sbjct: 61 KFNSENAEIFI------NTKNKLRLSISKNK----KIYLDGFESDVLSFVKSIKCVFFLS 110 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 E F P RR + D F+ + + ++L+ RN ++ + +L W Sbjct: 111 DEIFIFF-SKPSSRRKYFDQLIFNLDSDYLLLVQKYIKILRNRNIQCKK-NKVLELDIWT 168 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKETEYAEVLE 235 + L + +IS + Y + + L EFS+ +K+ + + Sbjct: 169 EYLKDINNRISEKKKIYVENLTKEFKKVSNDLLGKKVEFSIEI------DKKEYFPGIEN 222 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + E R T G H D + DG + S GQ KL + ++L+ S Sbjct: 223 KEIENGR----TLFGHHLEDYSLYIDGVNLNSYSSNGQKKLFLFLIKLSHLSLSEFYSYN 278 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVS-----AISAEHVIDMSDEN 344 + L +IDD SELD+ + L QV ++ IS ++I++++ N Sbjct: 279 QAL-IIDDLESELDNITINSILDYLSKINKQVIITNIDKLNISGFNIINLNNYN 331 >UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H639_STRPR Length = 347 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 80/166 (48%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + DFR+ ++ L PG VGANG GKT+++EA+ L + R + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + ER + L + ++ RI+ + + ++ ++ L PE Sbjct: 61 VRMGADRAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR 166 +L+ G P RR FLD P S+ +R+LKQRN L+ Sbjct: 121 DLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLK 166 >UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL06_9ACTO Length = 453 Score = 74.3 bits (181), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 90/206 (43%), Gaps = 10/206 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ E A +AL PG LVG NG GKT+++EA+ L + R + Sbjct: 1 MYLSDLALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R A V+ R+ T + + ++ RI+ + E+ + L PE Sbjct: 61 VRQGATAAVVQARVVRSSAPTTVEVEIYSGRANRARIN-RGLVRPPEIVGTVRSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------- 173 L++G P RR+FLD P S R +QR A L+ + Sbjct: 120 DLELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGGSADA 179 Query: 174 --LRPWDKELIPLAEQISTWRAEYSA 197 L WD +L L +I+ RAE A Sbjct: 180 AALDVWDVQLAKLGARITAARAEIVA 205 >UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=Bartonella RepID=A1UU73_BARBK Length = 378 Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 93/377 (24%), Positives = 147/377 (38%), Gaps = 31/377 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 +++T+L + +RN ++ S G NG+GKT++LEA+ L GR R V Sbjct: 4 VAVTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYSDV 63 Query: 61 I--RHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQL 116 R E E FV+ RLQ E +IG + G ++ + I+G + L + Sbjct: 64 SCSRGEGEGFVVFARLQCALYGEVSIGTALEAGGSNRRLHING-ENEACDCLTDYCHISA 122 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 +TP L G RR FLD + ++ + ++ RN R R Sbjct: 123 LTPSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARN---RLFADGNDDRA 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW------------ 224 W L E A A D+ + S + F R + Sbjct: 180 WFNAL----EMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALR 235 Query: 225 -----EKETEYAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLM 278 + E E+ + L RN DR T GPH+ DL++ AD + S G+ K L+ Sbjct: 236 KMSAVDVEEEFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALL 295 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 L L S ++L+D+ A+ LD RR L L Q F++ + + Sbjct: 296 IGLVLCHAHLTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTG-TDRILF 354 Query: 339 DMSDENSKMFTVEKGKI 355 D ++ F +E G + Sbjct: 355 DSLKGRAEFFEIEDGAL 371 >UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLS4_9ACTN Length = 361 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 77/317 (24%), Positives = 127/317 (40%), Gaps = 17/317 (5%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFV 69 +FRN + S LVG N GKT+ +EA+ L G +FR +++ ++ Sbjct: 12 NFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLMLEGEKQSK 71 Query: 70 LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGP 129 +H L G+ R + T + +G H LM + L TP+ + Sbjct: 72 IHAHLTGDGRVIDLSCTISSL-RRQYEKNGKKCHATDIPGDLMSV-LFTPDDLACIKRSA 129 Query: 130 KYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDKELIPLAEQI 188 YRR +D + + R ++QRN L++ V + L WD + + Sbjct: 130 SYRRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAWDTSVALGGATL 189 Query: 189 STWRAEYSAGIAADMADTCKQFLPEFSLTFSF----------QRGWEKETEYAEVLERNF 238 R + ++A ++ KQ L + Q E ++ L+ Sbjct: 190 LCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELLDKFLSSLKDAH 249 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES--GRR 296 D + T GPH+ D+ +G S+GQ + ++ AL++A E L E G + Sbjct: 250 GVDERRQQTTVGPHRDDIVFLINGKDARMYGSQGQQRSVILALKMA--EVLVSEEILGTK 307 Query: 297 CLYLIDDFASELDDERR 313 L L+DD SELD RR Sbjct: 308 PLLLLDDVMSELDKSRR 324 >UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax=Cyanobacteria RepID=RECF_TRIEI Length = 390 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/320 (21%), Positives = 134/320 (41%), Gaps = 32/320 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN + L+G N GK+++LE++ L ++ R+++ + Sbjct: 1 MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++A + L+ + + LT QG V ++G + + ++ + + Sbjct: 61 ILDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSL 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--------- 171 L+ GGP+ RR +LD EP + ++L+QRNA L+++ + Sbjct: 121 DLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETTGS 180 Query: 172 ------EQLRPWDKELIP-----------LAEQISTWRAEYSAGIAADMADTCKQFLPEF 214 ++L WD +L L ++++ E+ I+ M ++L Sbjct: 181 SPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV 240 Query: 215 ---SLTFSFQRGWE--KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTL 269 S Q E ++ ++ R Q T T GPH+ D+ + P Sbjct: 241 IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGT-TVVGPHRDDVIFTINDTPARQYG 299 Query: 270 SRGQLKLLMCALRLAQGEFL 289 S+GQ + L+ AL+LA+ + + Sbjct: 300 SQGQQRTLVLALKLAELQLI 319 >UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=Hyphomonadaceae RepID=Q0ATT8_MARMM Length = 384 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 100/366 (27%), Positives = 141/366 (38%), Gaps = 63/366 (17%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRS-------LQIG 58 L + +FR+ DL LSP L G NG+GKT++LEAI L GR RS + G Sbjct: 17 LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76 Query: 59 RVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSK--VRIDGTDGHKVAELAHLMPMQL 116 I E F + + RE L +G ++ RIDG + A LA LMPM Sbjct: 77 ADIAPEWAVFA-----EADTREGGFRLGVGARGSARRETRIDGEPAAQNA-LARLMPMIW 130 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 +TP L G R F D + + A + YE+ R Sbjct: 131 LTPAQDRLFAGPRADRLKFFD-----------------RLVHAADPAHADAASAYEKSRT 173 Query: 177 WDKELIPLAEQISTW-------RAEYSAGIAADMADTC-----------KQFLPEFSLTF 218 + L+ Q +W A + +AA D + P+ L Sbjct: 174 RRQRLLDEGGQDPSWLGAIEVEMAGHGVAMAAARLDALIRLQGEIDQRPEGVFPQADLAL 233 Query: 219 SFQ---------RGWEKETEYAEVLERNFERDRQLTYT-AHGPHKADL--RIRADGAPVE 266 E E + L RD T GPH+ +L R RA P Sbjct: 234 DGAVEADLAEGLTAGEAEDRFLAALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAG 293 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQ 326 D S G+ K L+ L LAQ L ++ G L L+D+ + LD RR LA + A+ SQ Sbjct: 294 DC-STGEQKALILTLALAQARALGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQ 352 Query: 327 VFVSAI 332 +++ + Sbjct: 353 AWLTGV 358 >UniRef50_Q3DSK5 DNA replication and repair protein recF (Fragment) n=1 Tax=Streptococcus agalactiae 18RS21 RepID=Q3DSK5_STRAG Length = 242 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 61/239 (25%), Positives = 105/239 (43%), Gaps = 16/239 (6%) Query: 129 PKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWDKELIPLAE 186 P RR FLD +P + SN +LKQRN L+ ++ L D++L Sbjct: 1 PSLRRKFLDIDIGQIKPTYLAELSNYNHVLKQRNTYLKTTNNVDKTFLTVLDEQLADYGS 60 Query: 187 QISTWRAEYSAGIAADMADTCKQFLP--------EFSLTFSFQRGWEKETEYAEVLERNF 238 ++ R ++ + D AD + + + F + L ++ Sbjct: 61 RVIEHRFDFIQALN-DEADKHHYIISTELEHLSIHYKSSIEFTDKSSIREHFLNQLSKSH 119 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTL-SRGQLKLLMCALRLAQGEFLTRESGRRC 297 RD T+ GPH+ D+ + + T S+GQ + L+ +L+LA+ E + + Sbjct: 120 SRDIFKKNTSIGPHRDDITFFIND--INATFASQGQQRSLILSLKLAEIELIKTVTNDYP 177 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L+DD SELD+ R+ L +K Q F++ S EH+ + D+ K+F V G I+ Sbjct: 178 ILLLDDVMSELDNHRQLKLLEGIKE-NVQTFITTTSLEHLSALPDQ-LKIFNVSDGTIS 234 >UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax=Alphaproteobacteria RepID=RECF_CAUSK Length = 392 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 96/361 (26%), Positives = 146/361 (40%), Gaps = 35/361 (9%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRS---LQIG 58 +L L + DFR+ E A L +L GANG+GKT++LEAI L G+ R +++G Sbjct: 5 ALLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLIEVG 64 Query: 59 RVIRHEQ--EAFVLHGRLQ------GEERETAIGLTKDKQGDSK--VRIDGTDGHKVAEL 108 R + E A+ + + G++ +G + G ++ VRIDG Sbjct: 65 RRLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGAARRIVRIDGETVPPGRLA 124 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 H+ P+ L TP L RR F D F EP + + ++R L Sbjct: 125 DHVRPIWL-TPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRLLTDA 183 Query: 169 TRYEQ------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR 222 Q L + L ++ RA + A++ + P L + + Sbjct: 184 AESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEIDSRGDRPFPRARLALTGE- 242 Query: 223 GWEK----ETEYAEV-------LERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLS 270 WEK E AE+ L RD GPH+ DL I D S Sbjct: 243 -WEKLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAAECS 301 Query: 271 RGQLKLLMCALRLAQGEFLTR-ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFV 329 G+ K L+ L LAQ L+R + + L+D+ A+ LD +RR LA + A Q F+ Sbjct: 302 TGEQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQAFL 361 Query: 330 S 330 + Sbjct: 362 T 362 >UniRef50_UPI0001BC5A53 RECF protein n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC5A53 Length = 248 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 85/203 (41%), Gaps = 7/203 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + RN++ ++ G NG GKTS+LEAIY G G +FR+ + Sbjct: 1 MRVLSIQCNHIRNLKNQKISFCAPIQVFYGKNGQGKTSILEAIYFAGTGLSFRTRHTSEM 60 Query: 61 IRHEQEAF--VLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I + ++ L + Q E+ A+ + DK+ + + E + M Sbjct: 61 ITYTEDTLSCFLEYQDQFSEKSLAVSIENDKKFFFFLGKKISQ----MEFYGNVNMIFYI 116 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPW 177 PE L+NG P RR F+D + + LLK RN L++ + E+ + Sbjct: 117 PEDVMLINGSPSLRRLFIDREISQTDSFYLHQLKKFSHLLKIRNKYLKEKLYENEEYAIY 176 Query: 178 DKELIPLAEQISTWRAEYSAGIA 200 +KE + + R +Y I+ Sbjct: 177 EKEFVECGSYLIEQRKKYIQEIS 199 >UniRef50_C6QHM0 DNA replication and repair protein recF n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QHM0_9RHIZ Length = 455 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 120/276 (43%), Gaps = 16/276 (5%) Query: 95 VRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNL 154 VRIDGT LA + + +TP L G RR FLD + G+ T Sbjct: 177 VRIDGTAQSGSGVLADYLEIVWVTPAMDGLFTGPGSERRRFLDRLILCFDHGYRTIAGRF 236 Query: 155 KRLLKQRNAALRQVTRYE-QLRPWDKELIPLAEQISTWRAEYSAGIA----------ADM 203 +R + RN L R + QL +++ + ++ R E A +A + Sbjct: 237 ERAMTSRNRLLADGVRDDSQLSGFERVMAETGVAVAAARLEAVAAMAQIVGKRRERDPNS 296 Query: 204 ADTCKQFLPEFSLTFSFQR--GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRI-RA 260 A F E S+ S QR E E YA+ L + ERDR + T GPH++DL + Sbjct: 297 AFPWSSFRLEGSIEDSLQRLSAVEAEDLYAQTLRQTRERDRAASRTLDGPHRSDLIVEHG 356 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLT-RESGRRCLYLIDDFASELDDERRGLLASR 319 S G+ K L+ L LA E LT R+ G + L+D+ + LD +RR L Sbjct: 357 PKGLAARHCSTGEQKALLLGLVLAHAELLTERQEGAAPILLLDEITAHLDADRRAALFDE 416 Query: 320 LKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + +Q +++ ++ + ++ + V++GKI Sbjct: 417 ILHLGAQAWMTGTD-KNAFEALAGRARFWAVQEGKI 451 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + +FR+ A++A G +VGANGSGKT++LEA+ L G+ R + ++R Sbjct: 11 VERLQLTNFRSYAAANVATDAGPQVIVGANGSGKTNLLEALSLLSPGQGLRRVPFSDLVR 70 >UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4S9_9ACTO Length = 409 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 101/400 (25%), Positives = 153/400 (38%), Gaps = 75/400 (18%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L DFR+ E L+L PG +G+NG GKT+++EA+ L + + R + Sbjct: 1 MYVSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 IR + VL ++ ER T + + ++ R+ G + EL ++ Sbjct: 61 IRRAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRARL-GRSPVRPRELLGVLRT 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-------- 166 + PE +L+ P RR FLD P + ++L QR + L+ Sbjct: 120 VIFAPEDLSLVREEPGVRRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAARRS 179 Query: 167 -------------------------QVTRYEQLRPWDKELIPLAEQI-STWRAEYSAGIA 200 +V +LRPW Q S Y + + Sbjct: 180 TASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRSSLL 239 Query: 201 AD--MADTCKQFLPEFSLTFSFQRGWEK-------ETEYAEVLE--------RNFERDRQ 243 A MAD + ++T + W + AE LE R +R Sbjct: 240 AHEGMADPDPR-----AITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGAN 294 Query: 244 LTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE------SGRRC 297 L G H+ +L + G P + S G+ L ALRLA E L + G Sbjct: 295 LV----GAHRDELSLFLSGMPAKGFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPV 350 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 L L D FAS LDD+RR LA + Q QV V+A + V Sbjct: 351 LILDDVFAS-LDDKRRRALAHTVAGAQ-QVLVTAAVPQDV 388 >UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHH5_9ACTN Length = 379 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 71/329 (21%), Positives = 134/329 (40%), Gaps = 27/329 (8%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 +R+FRN + ++ +G N +GK++VLEAI + FR + +IR + Sbjct: 10 LRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSREMIRWGCDC 69 Query: 68 FVLHGRLQGEER--ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLL 125 + + + R ET++ LT+ + + ++G H L ++P + +PE L+ Sbjct: 70 ADVKAHIVSDTRDLETSMRLTESSR---SIAVNGKRKHGQDVLG-ILPSVMFSPEDMQLV 125 Query: 126 NGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLA 185 G +RR LD + +++K +N+ ++ L + L+ Sbjct: 126 TGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSLMKNGIEGSLLDSVNDMLVTSG 185 Query: 186 EQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVL---------E 235 + +RA +A +A + +L + WE Y++ + E Sbjct: 186 AHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVPSWEDADLYSDRMRDAAHFFEVE 245 Query: 236 RNFERDRQLTYTAH-----------GPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 R R+ + H GPH L DG S+GQ + + + ++A Sbjct: 246 ECSNRMRRSLFNRHDEESRRGRALVGPHADKLFFYLDGRNATLYGSQGQRRSIALSWKIA 305 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERR 313 + + G + + L+DD ASELD+ RR Sbjct: 306 EIGLIEDVLGLKPILLLDDVASELDESRR 334 >UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BVD4_GRABC Length = 373 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 92/345 (26%), Positives = 138/345 (40%), Gaps = 20/345 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 ++LTR FRN + PG +VG NGSGKT++LEAI L GR R+ + ++ Sbjct: 11 LTLTR-----FRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQL 65 Query: 61 IRHEQ---EAFVLHGRLQGE--ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 R + ++ +H R+ E A G+ + +VRIDG AEL + Sbjct: 66 ARQGEGGDGSWAVHARILSPTGPVELATGVLPGTE-RRQVRIDGDIIRGQAELGAHITTV 124 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 +TP+ L GP RR FLD + EP + L +R L L Sbjct: 125 WLTPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLAMRADPAWLA 184 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT--------FSFQRGWEKE 227 + + A ++ R Y + + P L S E E Sbjct: 185 AVEDSIARHATAVTASRLAYVTRLNDVLVQGGAGGFPPARLDLNCAIATRLSRHPAVEVE 244 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQG 286 L + E D + G H++DL ++ A S GQ K L+ + L Sbjct: 245 DWLRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSASIASTGQQKALLIGVTLGHA 304 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 L GR + L+D+ + LD ERR LL + L+ Q F++A Sbjct: 305 VLLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTA 349 >UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax=cellular organisms RepID=RECF_SYNPX Length = 365 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 94/371 (25%), Positives = 149/371 (40%), Gaps = 82/371 (22%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 ++ FRN L L+ ++G NG GK+++LEA+ LG R+ R Q +I+ E Sbjct: 1 MQGFRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPR 60 Query: 68 FVLHGRLQ-GEERETAI-----------GLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 +L L G++ E + G T D+Q D + P++ Sbjct: 61 ALLRAGLDDGDQLELELRRQGGRQARRNGKTLDRQLDL-----------------IGPLR 103 Query: 116 LITPEGFT-----LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT- 169 I GF+ L+ G P RR +LD EP + RLL+QR+ R+ Sbjct: 104 CI---GFSALDLELVRGEPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQ 160 Query: 170 -----RYEQLRPWDKELIPLAEQIST---------------WRAEYSAGIAADMADTCKQ 209 R L +D ++ ++ +I W++ SAG Sbjct: 161 TNPNQRDALLDAFDVQMALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSE--------- 211 Query: 210 FLPEFSLTFSFQRGWEKETEYAE-----VLERNFERDR----QLTYTAHGPHKADLRIRA 260 L +Q G + E AE +E R +L GPH+ ++ ++ Sbjct: 212 -----ELELHYQPGSRLDAEEAEEPWRLAIEEQLRLQRPEEERLGSCRVGPHRDEVSLQL 266 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRL 320 G P S GQ + L+ L+LA+ E +T+ G L L+DD +ELD R+ LL + Sbjct: 267 GGTPARRFGSSGQQRSLVLGLKLAELELVTQLFGEAPLLLLDDVLAELDPTRQHLLLEAV 326 Query: 321 KATQSQVFVSA 331 + Q VSA Sbjct: 327 -GQEHQCLVSA 336 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Ta... 393 e-108 UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=... 382 e-105 UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=... 380 e-104 UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax... 376 e-103 UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax... 372 e-101 UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=... 371 e-101 UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=... 368 e-100 UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=... 367 e-100 UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=... 364 2e-99 UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=... 363 6e-99 UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=... 363 7e-99 UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=... 362 1e-98 UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax... 361 2e-98 UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=... 356 6e-97 UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax... 354 4e-96 UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax... 352 8e-96 UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax... 352 9e-96 UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=... 351 2e-95 UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=... 351 2e-95 UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=... 350 5e-95 UniRef50_UPI00016C0204 DNA replication and repair protein RecF n... 349 1e-94 UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=... 348 1e-94 UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=... 348 2e-94 UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=... 347 3e-94 UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=... 347 4e-94 UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=... 346 9e-94 UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Ta... 345 1e-93 UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=... 345 2e-93 UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=... 344 2e-93 UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax... 344 4e-93 UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=... 343 5e-93 UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=... 342 8e-93 UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=... 342 1e-92 UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=... 342 1e-92 UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=... 341 2e-92 UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax... 341 2e-92 UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=... 341 2e-92 UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=... 341 2e-92 UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=... 341 3e-92 UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=... 337 3e-91 UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax... 337 3e-91 UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=... 337 4e-91 UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=... 337 4e-91 UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=... 337 4e-91 UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=... 337 4e-91 UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=... 337 4e-91 UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax... 336 6e-91 UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=... 336 6e-91 UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=... 336 7e-91 UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax... 336 8e-91 UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=... 336 8e-91 UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=... 336 9e-91 UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax... 335 2e-90 UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=... 334 4e-90 UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=... 331 2e-89 UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=... 331 2e-89 UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=... 331 3e-89 UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=... 330 6e-89 UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=... 330 6e-89 UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax... 329 1e-88 UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=... 327 4e-88 UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=... 326 6e-88 UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=... 326 6e-88 UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=... 326 9e-88 UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=... 326 9e-88 UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=... 325 1e-87 UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=... 325 2e-87 UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax... 325 2e-87 UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=... 325 2e-87 UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=... 324 2e-87 UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=... 324 2e-87 UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=... 324 4e-87 UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=... 324 4e-87 UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=... 324 4e-87 UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax... 323 5e-87 UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=... 323 5e-87 UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=... 322 8e-87 UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=... 322 1e-86 UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=... 322 1e-86 UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=... 321 2e-86 UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=... 320 5e-86 UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=... 320 6e-86 UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=... 320 7e-86 UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=... 318 1e-85 UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=... 318 2e-85 UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=... 318 2e-85 UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax... 318 2e-85 UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=... 317 3e-85 UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=... 317 5e-85 UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=... 316 6e-85 UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax... 316 7e-85 UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=... 316 7e-85 UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=... 316 8e-85 UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=... 316 9e-85 UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=... 315 2e-84 UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=... 314 3e-84 UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=... 314 3e-84 UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=... 313 5e-84 UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococ... 312 8e-84 UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=... 312 8e-84 UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerof... 312 8e-84 UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=... 312 9e-84 UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax... 312 1e-83 UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax... 312 1e-83 UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=... 311 3e-83 UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=... 311 3e-83 UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=... 311 4e-83 UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=... 310 4e-83 UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=... 310 4e-83 UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=... 310 4e-83 UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=... 310 5e-83 UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=... 309 8e-83 UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=... 309 1e-82 UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=... 307 3e-82 UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=... 307 4e-82 UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=... 307 5e-82 UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibact... 306 6e-82 UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=... 306 8e-82 UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=... 306 1e-81 UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=... 306 1e-81 UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=... 305 2e-81 UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=... 304 2e-81 UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=... 304 4e-81 UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=... 304 4e-81 UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=... 303 8e-81 UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=... 302 1e-80 UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia... 302 1e-80 UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=... 302 2e-80 UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=... 302 2e-80 UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=... 302 2e-80 UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=... 302 2e-80 UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=... 301 2e-80 UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=... 301 2e-80 UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=... 301 2e-80 UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=... 301 3e-80 UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleid... 300 3e-80 UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=... 300 5e-80 UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=... 300 5e-80 UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=... 300 7e-80 UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=... 299 1e-79 UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=... 297 3e-79 UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=... 297 4e-79 UniRef50_UPI00016B2627 DNA replication and repair protein RecF n... 296 8e-79 UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=... 295 1e-78 UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=... 295 2e-78 UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=... 294 2e-78 UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=... 294 3e-78 UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=... 294 3e-78 UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9... 294 4e-78 UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=... 294 4e-78 UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax... 293 8e-78 UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=... 292 9e-78 UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax... 292 1e-77 UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=... 292 1e-77 UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=... 292 2e-77 UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=... 292 2e-77 UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=... 291 2e-77 UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=... 291 3e-77 UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaeroc... 291 3e-77 UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=... 291 3e-77 UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=... 290 4e-77 UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=... 290 4e-77 UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=... 290 5e-77 UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=... 290 7e-77 UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=... 289 1e-76 UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=... 289 1e-76 UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax... 289 1e-76 UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=... 288 2e-76 UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=... 288 2e-76 UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=... 288 2e-76 UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=... 286 9e-76 UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=... 286 1e-75 UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomi... 285 1e-75 UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=... 285 2e-75 UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=... 284 3e-75 UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax... 284 5e-75 UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=... 283 5e-75 UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=... 283 6e-75 UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=... 283 8e-75 UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=... 282 9e-75 UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=... 282 1e-74 UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=... 281 3e-74 UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR 280 4e-74 UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=... 280 5e-74 UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=... 280 6e-74 UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=... 279 1e-73 UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=... 279 1e-73 UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax... 279 1e-73 UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=... 279 2e-73 UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=... 278 2e-73 UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=... 278 2e-73 UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=... 278 2e-73 UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax... 278 2e-73 UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=... 277 3e-73 UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=... 277 3e-73 UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=... 277 4e-73 UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax... 277 5e-73 UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=... 274 4e-72 UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=... 273 8e-72 UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=... 272 1e-71 UniRef50_B0VFV3 Putative putative DNA repair and genetic recombi... 272 1e-71 UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=... 272 2e-71 UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=... 271 3e-71 UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=... 270 4e-71 UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=... 270 7e-71 UniRef50_UPI0001C311AF DNA replication and repair protein RecF n... 269 1e-70 UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=... 269 1e-70 UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=... 269 1e-70 UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Ta... 268 2e-70 UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=... 267 3e-70 UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=... 267 4e-70 UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=... 267 5e-70 UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=... 267 5e-70 UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=... 267 6e-70 UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=... 265 1e-69 UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=... 265 1e-69 UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax... 265 2e-69 UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=... 264 3e-69 UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=... 262 1e-68 UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=... 262 2e-68 UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=... 261 2e-68 UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=... 260 4e-68 UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=... 258 3e-67 UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=... 257 5e-67 UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 257 7e-67 UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=... 256 1e-66 UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=... 256 1e-66 UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=... 255 1e-66 UniRef50_C9RJE3 DNA replication and repair protein recF n=1 Tax=... 254 4e-66 UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax... 253 6e-66 UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=... 253 7e-66 UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=... 253 7e-66 UniRef50_D1BTA3 DNA replication and repair protein recF n=4 Tax=... 253 9e-66 UniRef50_C7JHC3 DNA replication and repair protein recF n=8 Tax=... 253 9e-66 UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=... 252 1e-65 UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=... 248 3e-64 UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=... 246 7e-64 UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=... 246 9e-64 UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=... 242 2e-62 UniRef50_C0R4Z7 Recombination protein F n=10 Tax=Wolbachia RepID... 238 2e-61 UniRef50_B4WQ25 DNA replication and repair protein recF n=1 Tax=... 238 3e-61 UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=... 236 9e-61 UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=... 236 1e-60 UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=... 233 7e-60 UniRef50_C5SHV9 DNA replication and repair protein recF n=1 Tax=... 230 7e-59 UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax... 229 1e-58 UniRef50_A5FW24 SMC domain protein n=3 Tax=Acetobacteraceae RepI... 226 1e-57 UniRef50_A5WBC3 DNA replication and repair protein RecF n=1 Tax=... 224 4e-57 UniRef50_A5CD18 DNA replication and repair protein n=2 Tax=Orien... 223 1e-56 UniRef50_A2BYV6 DNA replication and repair protein recF n=8 Tax=... 223 1e-56 Sequences not found previously or not previously below threshold: >UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Tax=Gammaproteobacteria RepID=RECF_SODGM Length = 364 Score = 393 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 275/359 (76%), Positives = 312/359 (86%), Gaps = 3/359 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+RL+IRDFRNI ADL+L+ FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ GRV Sbjct: 1 MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60 Query: 61 IRHEQEAFVLHGRLQGEE---RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 IRHEQ FVLHGR++ R T++GL++++ GDS VRIDG+DGHKVAELA L+PMQLI Sbjct: 61 IRHEQPEFVLHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLI 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TPEGFTLLNGGPKYRRAF+DWGCFHNEP FFTAWSNL+RLLKQRNAALRQV+RY+QLR W Sbjct: 121 TPEGFTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQVSRYQQLRVW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+ELIPLA +IS WRA+YSA IAAD+ TC QFLPEF L FSFQRGW+KE+++ E+LER Sbjct: 181 DQELIPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESDFGELLERQ 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERDR LTYTA GPHKAD RIRA+G PVED LSRGQLKLLMCALRLAQGEFLT +GRRC Sbjct: 241 FERDRALTYTASGPHKADFRIRAEGVPVEDILSRGQLKLLMCALRLAQGEFLTHRNGRRC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LYLIDDFASELD RR LLA RLKAT +QVFVSA+SA+ + D+ DE KMF VE+GKI+ Sbjct: 301 LYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKMFKVEQGKIS 359 >UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_ACTSZ Length = 358 Score = 382 bits (982), Expect = e-105, Method: Composition-based stats. Identities = 198/357 (55%), Positives = 263/357 (73%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+++RL+I +FRN+ DL GFNFLVG NGSGKTS+LE+I+ LGHGR+F+S R+ Sbjct: 1 MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +++ F LHGR+ ++ E ++GL K ++ G + V+I+G DG+K+++LAHL+PMQ+ITP Sbjct: 61 ITYDKPYFTLHGRIWEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQMITP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 EG TLLNGGP YRRAFLDWG FH+ P F +AWS L RLLKQRNAAL+Q Y L+ WD Sbjct: 121 EGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTYDYTDLQVWDV 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 EL LA Q+S WR +Y+ + ++ TC+ FLPE + SF +GW+K T+Y ++L NF Sbjct: 181 ELSKLAHQVSLWRTDYAEALRPEIEQTCRLFLPELDIQVSFHQGWDKNTDYGDLLRENFA 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+ + YT GP KAD R +A+G PVED LSRGQLKLLMCALRLAQGE L + R C++ Sbjct: 241 RDKHIGYTVSGPQKADFRFKANGFPVEDVLSRGQLKLLMCALRLAQGEHLMVQKNRSCIF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDFASELD+ +RGLLA RL+ + SQVFV+AI+AE + M EN + F+V G I+ Sbjct: 301 LIDDFASELDETKRGLLAERLRQSHSQVFVTAITAEQLKQMQPENHRTFSVNNGMIS 357 >UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_PSYIN Length = 359 Score = 380 bits (977), Expect = e-104, Method: Composition-based stats. Identities = 174/357 (48%), Positives = 239/357 (66%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL+I FRNI +A L +P N +VG NGSGKT++LEAIY LG GR+FR+ RV Sbjct: 1 MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE ++F L +Q IGL K K G++ ++I+G+ K+A L +P+QLITPE Sbjct: 61 VEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 G+TLL+G PK RRAFLDWG F+++P F+ WS +KRLLKQRNAAL+Q Y +L+ WD E Sbjct: 121 GYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET-EYAEVLERNFE 239 L L+E+IS R Y + + T FLP+FS+T F GW+K + L NF Sbjct: 181 LCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT+ GP KADLR + +G PV D LSRGQLKL + ALRLAQG FL ++C++ Sbjct: 241 RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDF+SELD ++ +LA + + +Q+F+S I+AE++ + + +F VE GKIT Sbjct: 301 LIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKIT 357 >UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax=Shewanella RepID=RECF_SHEHH Length = 365 Score = 376 bits (965), Expect = e-103, Method: Composition-based stats. Identities = 165/357 (46%), Positives = 234/357 (65%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSLTRL I FRNI A L G N + G NGSGKTS+LEAIY LG GR+FRS RV Sbjct: 1 MSLTRLHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H + L L E+E+ IGL + + G+++V+I+G + +++ LA +P+Q+ITPE Sbjct: 61 IQHNDDKLTLFANLSVCEQESKIGLRRFRNGETEVKINGDNIKRLSTLAETLPIQVITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F+LL GPK RR F+DWG FH++ F AW+N++R+LKQRN L+ Y Q++ WDKE Sbjct: 121 SFSLLFEGPKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKNQVSYSQIQYWDKE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L+ +EQ++ R +Y + + +FLP + SF RGW+ +T++ ++LE + R Sbjct: 181 LVRYSEQVTEIRKQYVDSLNEQLKGIIGEFLPLVEVKVSFTRGWDSKTDFGQLLETQYLR 240 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D T GPHKADLR+R PV+D LSRGQLKLL+CALR+AQG+ L +++ + +YL Sbjct: 241 DVAAGNTGSGPHKADLRLRVGVLPVQDALSRGQLKLLVCALRIAQGKLLKQQTDKNSIYL 300 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID-MSDENSKMFTVEKGKIT 356 +DD SELD + R LL +L T +QVFV+AI ++D ++ SKMF VE+G +T Sbjct: 301 VDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSLATPPSKMFHVEQGCVT 357 >UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax=Gammaproteobacteria RepID=RECF_PSEU5 Length = 370 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 214/360 (59%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL + RN+ L+ SP N L G NGSGKTS+LEAI+ LG R+FRS+++ V Sbjct: 1 MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 61 IRHEQEAFVLHGRLQGEERETA-IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +EQ A + G+++ ++ + +G+++D+ G+ ++RIDG AELA +P+QLI P Sbjct: 61 ITYEQPACTVFGQVELPDQHSRALGVSRDRSGEVRIRIDGQSVRSAAELADTLPLQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWD 178 + F LL G PK RR FLDWG FH E F +AW L++ L+QRN+ LR T W Sbjct: 121 DSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSASDAAWS 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +EL +++I +R Y + T K L LT S+ RGW+K+ +VL + Sbjct: 181 RELSLASDEIDGYRRAYIQALKPVFETTLKALLDLDGLTLSYYRGWDKDRPLVDVLASSL 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR + +T GP +ADLR++ + LSRGQ KL++CALR+AQG ++ +C+ Sbjct: 241 ERDRAMGHTQSGPQRADLRLKVGSHNAAEVLSRGQQKLVVCALRIAQGHLVSEAKRGQCI 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS--KMFTVEKGKIT 356 YL+DD SELD + R L L+ QVF++ + + + + E + MF VE G+IT Sbjct: 301 YLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGEQTPVSMFHVEHGQIT 360 >UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=RECF_ALKOO Length = 365 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 171/366 (46%), Gaps = 13/366 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + ++RN E +L P N +G N GKT+++E+IY G++FR+ + Sbjct: 1 MIVEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ +H +++ + I + + + ++++ K+ EL + + L +PE Sbjct: 61 INMNKKQAYIHVKVKKVHSDVHIEVRLNSERKKDLKVNQIPLVKMGELLGNLNVVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L+ GP RR F+D F+ S ++L+ RN L+ E + WD+ Sbjct: 121 DLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIEVWDE 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWE---------KETE 229 +L + +R + I+ ++ L ++ + + + Sbjct: 181 QLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDVIKEK 240 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + L+ NF D+Q T GPH+ D+ ++ +G V+ S+GQ + + +L+LA+ E + Sbjct: 241 ILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVKTYGSQGQQRTAVLSLKLAELELV 300 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E G + L+DD SELD +R+ L LK+ Q F++ E + D+ E+ +F Sbjct: 301 KGEVGEYPILLLDDVMSELDSKRQHYLIHNLKS--VQTFITTTMMETLKDLKPEDRAVFY 358 Query: 350 VEKGKI 355 V KG+I Sbjct: 359 VNKGQI 364 >UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=Idiomarina RepID=RECF_IDILO Length = 354 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 210/358 (58%), Gaps = 5/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN L+ SP N + G NGSGKTS+LEAIY LG GR+FR ++ Sbjct: 1 MFIETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ F + R ++ AIG+ + G+ +R++G + +++++A L+P+QL+TPE Sbjct: 61 IKEGNSGFTVFCR----SQDYAIGVRRSTDGEQSLRLNGANVQRMSDVARLVPVQLLTPE 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L GP RR F+DWG FH E F++ W +LLKQRN+ L+Q + + R W + Sbjct: 117 SVDILLEGPGQRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDRYWKE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L E+IS R +Y + + + K FL + ++ + GW+ + LE + E Sbjct: 177 QLAYYGERISKSREKYLEELNDYIQELAKSFLSDVTMEVRLKSGWDTSQSLFDALESHTE 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D++ +T+ G HKAD+++ ADG V+ LSRGQLK + AL+LAQG+ + + C+Y Sbjct: 237 KDKKYGFTSVGAHKADIKVIADGVEVKHRLSRGQLKTAITALKLAQGKHYQKIKRQPCIY 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 L+DD SELD + + LL L+ +QVF++AI+ + + D ++ +MF VE G I + Sbjct: 297 LVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSDKFQKSPRMFHVEHGVINE 354 >UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=Clostridium RepID=RECF_CLOCE Length = 372 Score = 367 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 175/371 (47%), Gaps = 19/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L++ ++RN + S FN G NG GKT++LEAIY GR+ R+ + + Sbjct: 1 MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSEL 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+ E F + + + I ++ + +++I+ K+ L + L +P Sbjct: 61 IKFGCENFSIAVHVSKTGGLDKDIEISYYENQKKQIKINDIPIKKIGALMGNLYAVLFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL----R 175 E ++ GP RR F+D +P +F + ++LKQRN L+ ++ +L Sbjct: 121 EDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMDTVD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP------EFSLTFSFQRGWEKETE 229 W+ L +A I R +S ++ MA+ FL F SFQ + +TE Sbjct: 181 IWNMRLAEVAAAIIKARRTFSIMLSG-MAENQHNFLTGKSEKISFDYRCSFQISGQDDTE 239 Query: 230 -----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 Y LE++ +RD L YT GPH+ D I + ++ S+GQ + + +L++A Sbjct: 240 QIEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKLYGSQGQQRSAVLSLKIA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + + + + + L+DD SELD R+ L +K + Q F++ + EH ++ N Sbjct: 300 EIELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIK--EVQTFITCTNKEHFGNLLSAN 357 Query: 345 SKMFTVEKGKI 355 S F + G I Sbjct: 358 SNFFKIVGGNI 368 >UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=Bermanella marisrubri RepID=Q1MXH8_9GAMM Length = 357 Score = 364 bits (935), Expect = 2e-99, Method: Composition-based stats. Identities = 130/359 (36%), Positives = 208/359 (57%), Gaps = 7/359 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L+++ RN+ +++ SP N + G NGSGKTS LEAIY L + ++FR+ + + Sbjct: 1 MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H Q +L ++ +G+ ++++G +++++G + AELA ++P+QL+ P Sbjct: 61 IQHGQNTMTGFCQLPHKQ----LGVERNQEGQRRIKLNGVCLNSAAELASVLPIQLLDPT 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 F LL G P+ RR ++DWG FH EP FF W KR + RNA LR E + + W Sbjct: 117 MFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERKIWHS 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L LA QI++ R Y + + +T SF +GW+K+ +Y E+LE +++ Sbjct: 177 SLSDLANQITSMRIAYLERLKPLFDHYMARLNDGLGVTMSFYQGWKKDQDYYELLESSWK 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + YT GP +ADLRI+A+ P D LSRGQ K+++CAL+LAQ + + SG C++ Sbjct: 237 SDIESGYTKSGPQRADLRIKAENVPAMDVLSRGQQKMVVCALKLAQADLYKQVSGSPCIF 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM--FTVEKGKIT 356 L+DD A+ELD R L L+ + QVFV+A+ + + +S++ F VE G I Sbjct: 297 LVDDLAAELDINHRKALCRLLEELKCQVFVTAVESTQIQGCWSPSSQLKTFHVEHGTIN 355 >UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=Cellvibrio japonicus Ueda107 RepID=RECF_CELJU Length = 365 Score = 363 bits (932), Expect = 6e-99, Method: Composition-based stats. Identities = 144/362 (39%), Positives = 222/362 (61%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL RL + RN+E+ D+ S N + G NGSGKTS+LEAI L GR+FRS + + Sbjct: 1 MSLARLRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPL 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H+Q AF + GR+ ++ E IG+ +++QG+ ++ +G + +A+LA +P+Q+I Sbjct: 61 ISHQQLAFTIFGRVLADDAAEIPIGIQRNQQGEVMLKANGANVGSIADLAIFLPVQVINS 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWD 178 + F LL G PK RR F+DW FH E F+ W +L+R LK RN+ LR+ +L WD Sbjct: 121 DTFLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELSTWD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +EL+ L EQI +R + A ++F+ L +QRGW+K +YA+VL+ +F Sbjct: 181 QELVQLTEQIHCFREQCMALFVPVFEQLLQEFVVLEGLELHYQRGWDKHKDYAQVLQDSF 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD++L T G H+A+LRI +G + LSRGQ KLL+CAL++AQG ++ +GR+C+ Sbjct: 241 ERDKRLGVTHAGSHRAELRITLNGQDAAEILSRGQQKLLVCALKIAQGLVFSQVTGRKCI 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV----IDMSDENSKMFTVEKGK 354 YL+DD +ELD++ R L L +QVF++ + + + +D + KMF VE G+ Sbjct: 301 YLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKPEITPKMFHVEHGR 360 Query: 355 IT 356 ++ Sbjct: 361 VS 362 >UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RECF_THISH Length = 360 Score = 363 bits (931), Expect = 7e-99, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 192/357 (53%), Gaps = 3/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +R R + + G N + G NG+GKTS+LEAI+ L G +FR+ Q+ + Sbjct: 1 MILNRLEVRGLRILRHVRMDPVSGLNLVHGVNGAGKTSLLEAIHLLSTGHSFRTRQLSPL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + + +A + R+Q G +G+ K + + RI G + +A+LA L+P+Q++ Sbjct: 61 LAPDCDAVEVVARIQSTGGGEPWPVGIRKTRD-STTARIRGENVRSLADLARLLPLQVMH 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE L++GGP YRRAFLDWGCFH +P + W + LL QRNAALR + L WD Sbjct: 120 PESHLLVSGGPGYRRAFLDWGCFHTDPAYHDHWRRYRHLLCQRNAALRDRSPARLLSAWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 L + RA + + + ++ L ++RGW E +E L + Sbjct: 180 TALGEAGSALDLARATHLQTLLPYLDSLKQELPETSGLALEYRRGWNPEESLSESLAHSV 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 +RDR +T GPH+A+L R DG PV SRGQ K ++ L++AQ +L G + Sbjct: 240 QRDRSAGFTQVGPHRAELLCRLDGRPVAQVASRGQQKSVVLMLKMAQSLWLMETLGFPPV 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +ELD RG L + L+ SQVFV+AI ++ V ++ +MF VE G + Sbjct: 300 VLVDDLPAELDARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQMFHVEHGTL 356 >UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT32_9GAMM Length = 357 Score = 362 bits (929), Expect = 1e-98, Method: Composition-based stats. Identities = 134/355 (37%), Positives = 197/355 (55%), Gaps = 2/355 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL +L I++ R + T ++ALSP N + G N SGKTS+LEAI+ L GR+FR+ + Sbjct: 1 MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE + V+ + + IG+ + + + +++ G +V+ELA +P Q+I P+ Sbjct: 61 LSHEAKQAVVAATVHQPDGACRIGVQRSAR-EWLMKVGGERVQRVSELARWLPTQVIHPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 LL GP YRR FL+WG FH E F+ AW +R LKQRN+ALRQ WD E Sbjct: 120 SHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQ-KDARMDGAWDSE 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L A I R EY A + + + + + +Q GW+ E A VL E+ Sbjct: 179 LSRAASFIHELREEYVADLNRILPRFVAAMMGQQEVQMVYQPGWDSEQTLATVLRDYREK 238 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 DR +T GPH+ADL + +G + +SRGQ K+L+ ALRLAQ +SG+ CL + Sbjct: 239 DRYRGHTQQGPHRADLSFKVNGYKAQAEISRGQQKMLVSALRLAQAALYQEQSGQSCLIM 298 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 +DD +ELD++ R L L QSQV V+ + AE + + + K+F VE GK+ Sbjct: 299 MDDLPAELDEKHRNALMGLLADMQSQVLVTCVEAEQIPLNAWKEYKLFHVEHGKV 353 >UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax=Bacilli RepID=RECF_BACC2 Length = 375 Score = 361 bits (928), Expect = 2e-98, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 169/370 (45%), Gaps = 17/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + ++++RN E +L+ N ++G N GKT+++EAIY L ++ R+ + Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++E + G+LQ ++ L K+G K +++ + K+++ +M + + PE Sbjct: 61 IRWDEEFGQIKGKLQKRNSSLSLELNISKKG-KKAKLNQLEQQKLSQYIGVMNVVMFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-----QLR 175 L+ G P+ RR FLD P + S +++L QRN L+++ L Sbjct: 120 DLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE----- 229 + +LI +I R E+ + A + L ++ + Sbjct: 180 VFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSK 239 Query: 230 ----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 Y E + +R+ T GPH+ DL+ + V+ S+GQ + +L+LA+ Sbjct: 240 IKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + E + L+DD SELDD R+ L + ++ Q FV+ S + + + +++ Sbjct: 300 IELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKDA 358 Query: 346 KMFTVEKGKI 355 K V G + Sbjct: 359 KTIHVTNGTV 368 >UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=Clostridia RepID=RECF_HALOH Length = 375 Score = 356 bits (915), Expect = 6e-97, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 173/372 (46%), Gaps = 18/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ ++DFRN+ + L N VG NG GKT+ LEA+Y +G + R+ + Sbjct: 1 MYIDRIYLKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ V+ L + + I L +K+ K+ I+ +V+EL + + L +PE Sbjct: 61 IRWNQDRAVVQLYLVKRDEKLKISLEINKKV-KKLEINDVPQERVSELLGNLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-----TRYEQLR 175 L+ GP +RR FLD +P + +L QRN L+++ + L Sbjct: 120 DLKLVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDTTLLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK-------- 226 WD++L+ + +I R E + + +Q +T S++ Sbjct: 180 VWDEQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEEKELE 239 Query: 227 --ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 + + L N + YT GP + DL+I +G + S+GQ + +L+LA Sbjct: 240 EIKIIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIRKYGSQGQQRTAALSLKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EF+ E G + L+DD SELD++RR L + + Q F++A ++ +++ + Sbjct: 300 ELEFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATDFFNLNEINTPS 358 Query: 345 SKMFTVEKGKIT 356 K+F V G IT Sbjct: 359 IKVFKVRNGLIT 370 >UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax=Bacteria RepID=RECF_EUBE2 Length = 363 Score = 354 bits (908), Expect = 4e-96, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 151/363 (41%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++DFRN E D+ + N + G N GKT++LE+IY ++ R + + Sbjct: 1 MIVESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + + + I + K + ++G K EL ++ + +PE Sbjct: 61 VRFGEDESHIKLNVLKHGMKYRIDMHLKKNKTKGIAVNGIPIKKAVELFGIINIVFFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQL 174 ++ GP RR F+D + + + N ++L QRN L+ + + L Sbjct: 121 DLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQLMQTL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 WD +L+ I R + I ++D + ++ E + Sbjct: 181 DIWDMQLVKYGSLIIKGRKSFIEKINTIISDIHSRLTGGIENIKVCYVPDVDVNDFEEEV 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + ++D + T GPHK DL + V S+GQ + +L+L++ E + Sbjct: 241 RNSRQKDIKYKVTGKGPHKDDLIFLINDNDVRKYGSQGQQRTAALSLKLSEIELVKLVIK 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD R+ L + + Q V+ E I+ +K+F V G Sbjct: 301 DTPVLLLDDVLSELDSNRQNFLINSIG--DIQTIVTCTGLEEFINNRMNINKIFKVTDGH 358 Query: 355 ITD 357 + + Sbjct: 359 VVN 361 >UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax=Streptococcaceae RepID=RECF_STREM Length = 369 Score = 352 bits (905), Expect = 8e-96, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 173/364 (47%), Gaps = 12/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN + A A SPG N +G N GKT+ LEAIY L R+ R+ + Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ + G L+ + + +G +I+ K+++ M + L PE Sbjct: 61 IYFDERDCSISGTLERLSGRVQLEILLSDKG-RITKINTLKQAKLSDYIGAMMVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWD 178 L+ G P RR F+D +P + + S+ +LKQRNA L+ V + + L D Sbjct: 120 DLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFLSVLD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAAD-------MADTCKQFLPEFSLTFSFQRGWEKETEYA 231 ++L+ ++ R + +A + +++ ++ + + SF+ E ++ Sbjct: 180 EQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQQEIYQQFM 239 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 + L+ +RD T GPH+ DL +G + S+GQ + L+ +L++A+ + + Sbjct: 240 DQLKTTHQRDFLRKNTGVGPHRDDLIFYINGMNA-NFASQGQHRSLILSLKMAEVSLMKQ 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 +G + L+DD SELD+ R+ L +K Q F++ S +H+ + ++ +F V Sbjct: 299 LTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLKHLSQL-PKDISLFKVN 357 Query: 352 KGKI 355 KG I Sbjct: 358 KGTI 361 >UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax=Clostridium RepID=RECF_CLOB8 Length = 367 Score = 352 bits (905), Expect = 9e-96, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 164/363 (45%), Gaps = 11/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + ++RN + + L+ N VG N GKT++LE++Y ++ R+ + + Sbjct: 1 MYVKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E + + + I + + G ++++ +K+ EL + + + +PE Sbjct: 61 INWENSTAYISLLIGKNRLDKKIDINILRDGKKAIKVNNIKVNKIGELFGIFNVVMFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDK 179 ++ P RR LD P ++ ++L +RN L+ + E L +D Sbjct: 121 DLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDILDVYDI 180 Query: 180 ELIPLAEQISTWRAEYSAGIA-------ADMADTCKQFLPEFSLTFSFQRGWEKETEYAE 232 +L A+ I + R EY I ++ ++ +++ T + + G K+ Y + Sbjct: 181 QLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENGKFKD-NYLK 239 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L+ N ++DR+ T+ GPH+ D + + + S+GQ + + ++ A + + Sbjct: 240 KLKDNIQKDREKGLTSVGPHRDDFSVFINNIDTKIFGSQGQQRTSILTMKFASLKIIREI 299 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 +G + L+DD SELD R+ + +K Q ++ E + D D+ K+F V Sbjct: 300 TGEYPVLLLDDVLSELDLNRKKYILRSIK--DIQTIITCAGIEDLNDYLDDKVKIFNVSN 357 Query: 353 GKI 355 G+I Sbjct: 358 GQI 360 >UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R5Z5_KANKD Length = 369 Score = 351 bits (902), Expect = 2e-95, Method: Composition-based stats. Identities = 120/360 (33%), Positives = 206/360 (57%), Gaps = 5/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I++FRN++ + L SP N + G N +GKTS+LE+++ LGHGR+FR+ + ++ Sbjct: 1 MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +EQ++F L L + +G+ + + D VR++ K+++L L+P+Q++ PE Sbjct: 61 INYEQDSFTLFSELYSHNVQQRLGVQRFRNNDVNVRLNQEPLAKLSDLVSLIPIQVLAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + LL GP RR LDWG FH E F W +R++ QRN L+ Y+ L WD + Sbjct: 121 HYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLLKGSLSYKDLEAWDSQ 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 LIPL++Q++ +R +Y ++ + QFLP+ L+ F +GW+ + + +L + + Sbjct: 181 LIPLSDQVNQYRQDYCDSLSPYFHEIASQFLPDVQLSLEFYKGWQGK-DLESLLVEQYLK 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D++L YT KADL+I + D LSRGQ KL+ AL+LAQ + ++L Sbjct: 240 DKKLGYTQSTIQKADLKILSGKRLAADYLSRGQQKLVTTALKLAQLRLAQERGQQYPVFL 299 Query: 301 IDDFASELDDERRGLLASRLKATQ--SQVFVSAISAEHVIDMSDE--NSKMFTVEKGKIT 356 +DD +ELD+ + LL + L Q+F++ + + + + + N+++F VE G ++ Sbjct: 300 LDDIGAELDENHQKLLLNFLAKQPEKQQIFITCVHLDPLKSLINRYNNARLFHVEHGAVS 359 >UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=Clostridiales RepID=B0PBN6_9FIRM Length = 379 Score = 351 bits (901), Expect = 2e-95, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 162/368 (44%), Gaps = 20/368 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ I DFRNI + +LAL PG N + G NG GKT+ +EA++ ++FR + ++ Sbjct: 1 MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + RE LT +K+ ++ AELA + +P Sbjct: 61 VRFGAPQAAVEAGFYAAGREQKALLTIEKR--RAAALNEVPLKSAAELAGQFCAVVFSPA 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 TL+ GP+ +R F+D +P + + R+L QRN L+ + + ++ L Sbjct: 119 HLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMYETSLFDTLDI 178 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTC-------KQFLPEFSLTFSFQRGW---EK 226 WD L + RA + +A + ++F ++ + + G E Sbjct: 179 WDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLAVDPGASMSEI 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 E E L + D + T GPH+ D+ + DG S+GQ + + AL+LA+ Sbjct: 239 EQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTLDGQSARAFGSQGQQRSCVLALKLAEC 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E + G + L+DD SELD RR L + L+ Q+ +++ +S S Sbjct: 299 ELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQGR--QIIMTSCDGSDFKGLSSGVSV 356 Query: 347 MFTVEKGK 354 +E G+ Sbjct: 357 --RIEDGR 362 >UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=Alteromonadales RepID=RECF_PSEA6 Length = 363 Score = 350 bits (898), Expect = 5e-95, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 208/362 (57%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + IR+ RN++ S G NF++G NGSGK+S+LEAI+ LG GR+FR+ + V Sbjct: 1 MKLDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++EQE+F + + +GL++ V I+G G+KV++L L+P+Q+ TP+ Sbjct: 61 IQNEQESFTVFCECLEDSTTQRLGLSRSINDTVSVSINGIKGNKVSDLVSLLPVQIFTPQ 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ---VTRYEQLRPW 177 +L G PK RR ++DW FH E F T + RLLK NA R+ Q W Sbjct: 121 SSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQRVYW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 L +++ +R + + QFLPEF + S+ RGWEK E E L ++ Sbjct: 181 TDLLAQYGSELTEFRNAMMTRLIPLITSNLAQFLPEFCVEISYYRGWEKGLELNEALTKS 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + Y + GPHKAD+R + G P ++ LSRGQL++L+ AL+LA + L + + C Sbjct: 241 ADRDYKNGYISVGPHKADVRFKISGKPAQEVLSRGQLRMLVAALQLATTQCLMSYTQKTC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 ++L+DD +ELD +R + RL + +Q+FV+AI EH ++ D +N KMF VE G++ Sbjct: 301 IFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAIE-EHQLEFIDKYQNKKMFHVEHGQV 359 Query: 356 TD 357 + Sbjct: 360 RE 361 >UniRef50_UPI00016C0204 DNA replication and repair protein RecF n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0204 Length = 359 Score = 349 bits (895), Expect = 1e-94, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 167/359 (46%), Gaps = 8/359 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + +FRN + L+LS G N G N GKT+VLEAIY R+ R+ V Sbjct: 1 MYISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + E +++ L + + I K+ V ++ +K+ +L ++ + PE Sbjct: 61 IKWDSENALVNLMLTKQYSLSTIDFIISKR-YKSVLVNKLPINKLTKLFGVLNVVFFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---YEQLRPW 177 L+ PK RR F+D + + + S+ ++LKQRN L+Q YE L Sbjct: 120 NLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEFLDIL 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLER 236 D+ L A++I R+E+ + A + + L ++ + + L+ Sbjct: 180 DENLYKYAKKIFYKRSEFIENLNTKAAAIHLELSGGKEHLKLIYEPNVDINI-FKSRLKF 238 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +RD + T GPH+ D+ + ++ S+GQ + + +++ AQ + +T +G Sbjct: 239 NRDRDIRTKTTNSGPHRDDINFLMNDHSLKLFGSQGQQRTCILSIKFAQIDIITEITGET 298 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+DD SELD R+ L + Q ++ + + +++ K+F VEK I Sbjct: 299 PILLLDDILSELDINRQKYLFKYINNL--QTMITCTGVDPNLFTWNDSIKVFIVEKANI 355 >UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=Reinekea blandensis MED297 RepID=A4BD84_9GAMM Length = 364 Score = 348 bits (894), Expect = 1e-94, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 201/358 (56%), Gaps = 6/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L + RN+ +A L LSPG N G NG+GKTSVLEAI+ L R+F+ + V Sbjct: 1 MAVLTLSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE E ++ G L R +G+ + ++G ++R++G +A+L HLMP+QLI + Sbjct: 61 VSHELEELLVTGELGDGSR---LGVRRTQKGQVQIRLNGESLASLAQLVHLMPVQLIHSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 F LL G P RR FLDWG FH F W L++ LK RN+ LR QL W++ Sbjct: 118 SFALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLAVWER 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 E I AE+I +R +Y G D Q + L + RGW+++ EVLE+ + Sbjct: 178 EYIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWDRQKPLNEVLEQQRD 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD +L YT GP +AD+RI+ + D LSRGQ KL++CAL++AQ +L R+ + ++ Sbjct: 238 RDMKLGYTQSGPQRADMRIKVNKVNAADELSRGQQKLVVCALKIAQSLYLQRQQNQPTVF 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS--DENSKMFTVEKGKI 355 LIDD +ELD L + ++ QSQVF++ + + + +MF VE G+I Sbjct: 298 LIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKTFWKHPDQVRMFHVEHGEI 355 >UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2M2_9GAMM Length = 373 Score = 348 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 135/361 (37%), Positives = 193/361 (53%), Gaps = 9/361 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 SL+RL I RN+ L N G NGSGKTSVLEAI+ LG R+FR I ++ Sbjct: 6 SLSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGS-IKSLV 64 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H Q+ + G L E R T +G+ + G+ K++I G+ VAEL +P+Q+I + Sbjct: 65 THGQDHCTVFGAL--EPRSTTLGVQRGVTGEVKIKIAGSPVRTVAELVEYLPVQVINADS 122 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKE 180 F LL G P RR +LDWG FH E FF W +R +KQRN LR+V E+L W +E Sbjct: 123 FNLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPTEELAVWTRE 182 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 L E +S +R Y + + Q P + L +++GW+K+ EY + LE + Sbjct: 183 LAQSGEVLSGYRESYFNRLTPRFIEIMAQLAPSLTGLELRYRKGWDKQLEYQQALENSTM 242 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + YT GP + D+R+ +G DTLSRGQ KL++C L+LAQG+ + C Y Sbjct: 243 TDIEQGYTHVGPQRGDVRVLTEGHVAADTLSRGQQKLVVCGLKLAQGQLMAEMGRGNCTY 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK----MFTVEKGKI 355 L+DD SELD + L+ L +QVF++ + + + E + MF VE G + Sbjct: 303 LVDDLPSELDLQHSSLVCGLLAGMNAQVFITCVHQNDIQAVWPEEKQQELAMFHVEHGSV 362 Query: 356 T 356 T Sbjct: 363 T 363 >UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=Symbiobacterium thermophilum RepID=RECF_SYMTH Length = 375 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 167/369 (45%), Gaps = 14/369 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + FRN ++ + SPG N L G N GKT++LEAI+ L GR+ R+ + + Sbjct: 1 MYLSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ +E + + + L Q +++I+G K+A L + + L +P+ Sbjct: 61 VQEGREELLARAAVVRRTGTIELELRCGLQTRKQLKINGIAERKIARLVGSLAVVLFSPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 LL G P RR FLD + RL+ QRN L+Q E L +D+ Sbjct: 121 DLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLMAVYDE 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEV----- 233 +L+ Q+ RAE ++ + + + L ++Q + A++ Sbjct: 181 QLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADLETVRR 240 Query: 234 -----LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L R +R+ T GPH+ D+ G S+GQ + + AL+LA+ EF Sbjct: 241 RLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARLYASQGQQRTAVLALKLAELEF 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV-IDMSDENSKM 347 ++ E G L L+DD ASELD RR L S ++ Q F++ E + + + ++ Sbjct: 301 MSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTDLEDLMVREWPADHRL 359 Query: 348 FTVEKGKIT 356 F V G + Sbjct: 360 FRVRAGTVV 368 >UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQA9_9FIRM Length = 365 Score = 347 bits (891), Expect = 4e-94, Method: Composition-based stats. Identities = 99/367 (26%), Positives = 173/367 (47%), Gaps = 14/367 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R++RN +LAL PG N +G N GKT+V+EA+Y G + R+ + Sbjct: 1 MYVRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + + + + ++ ++G ++ EL + L +PE Sbjct: 61 IRWDAGEGCIILDFDRRGVMNHLEFQFSRAKRRRILLNGHPI-RLKELIGSINTVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 L+ G P RR FLD P ++ R++ QRN+ L+++ L Sbjct: 120 DLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADKSMLAL 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQ-RGWEK-----ETE 229 WD++LI AE+I R E + ++ + +LT S++ G E + Sbjct: 180 WDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMTKGFASW 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 Y E+L ++ E D T++GPH DL + +G + S+GQ + + +L+LA+ EFL Sbjct: 240 YNEMLRKSQETDILRGSTSYGPHHDDLVLTVNGINLRTFGSQGQQRTGVLSLKLAELEFL 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E+G + L+DD SELD +RR L ++ + Q ++A A + ++ + + Sbjct: 300 RSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFP--AEGMGRYYH 357 Query: 350 VEKGKIT 356 V+ G+IT Sbjct: 358 VQSGQIT 364 >UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RECF_NATTJ Length = 386 Score = 346 bits (887), Expect = 9e-94, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 163/377 (43%), Gaps = 24/377 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L +++FRN L GAN GKT++LEAIY L G++ R+ + + Sbjct: 1 MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLT--KDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E F L G L+ E+ + + + + ++++ M + + + Sbjct: 61 IRWETSGFYLKGELEKEQAQYTLEIITNYQNGKNKNLKVNNLSQTNTRNFLKTMNVVIFS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR--- 175 PE L+ G P RR F+D +P + N + L+QRN L+ L Sbjct: 121 PEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLLKTYQDKNTLAQHL 180 Query: 176 -PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKET----- 228 PW+++L+ +I R E I ++ + +L + E E Sbjct: 181 PPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCKFRE 240 Query: 229 ---------EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 ++ L N + D + T+ GPH+ DL + + S+GQ + + Sbjct: 241 QLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKDARQFGSQGQQRTTVL 300 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 AL++A+ E + E G + L+DD SELDD R+ L + L + Q FV++ S E Sbjct: 301 ALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLN-LTEGRVQTFVTSTSMEDFNG 359 Query: 340 MSD--ENSKMFTVEKGK 354 D S++F ++ G+ Sbjct: 360 DVDIKAKSQVFRIDNGE 376 >UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Tax=Bacilli RepID=RECF_LACBA Length = 384 Score = 345 bits (885), Expect = 1e-93, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 166/371 (44%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++ FRN TA L G N L+G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + GR+ + LT +QG + R++ + ++++ + + L PE Sbjct: 61 VNWQAKTAKVSGRVVKAAGAVPLELTFSRQG-KRARVNHLEQARLSQYVGQLNVILFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 ++ G P RR F+D P + S + LLKQRN L+ + + L Sbjct: 120 DLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDLLFLS 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRGWEKETE--- 229 +L +I R + A + Q E + ++ Q ++ T+ Sbjct: 180 VLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLTDVPT 239 Query: 230 ----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + +++ T GPH+ DL + +G V+ S+GQ + +++LA+ Sbjct: 240 ITAALSALYAKQQDKELYQGTTLVGPHRDDLHFQVNGKNVQTFGSQGQQRTTALSVKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + + E+G + L+DD SELDD R+ L + ++ Q F++ S + ++ Sbjct: 300 IDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQDK-VQTFITTTSLSGITRQLIKDP 358 Query: 346 KMFTVEKGKIT 356 +F V +G + Sbjct: 359 TIFHVAEGTVV 369 >UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=Saccharophagus degradans 2-40 RepID=RECF_SACD2 Length = 367 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 136/363 (37%), Positives = 204/363 (56%), Gaps = 9/363 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L+ L ++ FRN+ D+ SP N + G NGSGKTS+LEAI L H R+FR+ + R+I Sbjct: 3 HLSNLKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + AF + ++G + +G+ ++ G S ++DG A+LA +P+Q+I Sbjct: 63 QDTTTAFTVFATVEGSD-AFKVGVQREWSGKSTAKLDGLSAKSSAQLATNLPVQIIDAHT 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKE 180 F LL GG K RR F DW FH + F TAW+N + +KQRN+ LR Y LRPWD++ Sbjct: 122 FALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRPWDEQ 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQ--FLPEFSLTFSFQRGW-EKETEYAEVLERN 237 + LA I R E + + F LT ++Q GW E E + + LE+ Sbjct: 182 IAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGELSFPKQLEQA 241 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F RDR+L YT GPHK+DL+I A+G+P + LSRGQ K ++ AL +A+ + + GR Sbjct: 242 FARDRKLGYTILGPHKSDLKITANGSPAVEVLSRGQQKAVINALHIAEAQVYKTQIGRTP 301 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS----DENSKMFTVEKG 353 ++L+DD SELD +L+ L +QVFV+ + A + + +E KMF V++G Sbjct: 302 VFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKNEAIKMFHVKQG 361 Query: 354 KIT 356 ++T Sbjct: 362 EVT 364 >UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RECF_HELMI Length = 372 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 163/368 (44%), Gaps = 12/368 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + FRN + PG N VGANG GKT++LE+I L G + R + + Sbjct: 1 MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ ++ + + + + I L + +++ ++A+L+ M + +PE Sbjct: 61 VQWQEAYYRIKAMGTADGQPVVIELAFGGERRKLAKVNNRRLRRIADLSETMNTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----QLRP 176 +L+ G P RR +LD P + S R+L QRN+ LR++ +L Sbjct: 121 DLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSATAAELEL 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKE-----T 228 WD +L PLA + R + A IA + + LT+ + Sbjct: 181 WDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPDDRSRWLE 240 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Y + L+ + T GPH+ DL++ +G S+GQ + + +L+LA+ F Sbjct: 241 AYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARIYGSQGQQRSIALSLKLAEIAF 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + + + L+DD SELD +RR L S L++ QVF++ + ++ Sbjct: 301 IHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAFSPEQLGRAGIY 360 Query: 349 TVEKGKIT 356 ++ G+++ Sbjct: 361 RIQAGQLS 368 >UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax=Leptospira RepID=RECF_LEPBJ Length = 365 Score = 344 bits (882), Expect = 4e-93, Method: Composition-based stats. Identities = 99/362 (27%), Positives = 165/362 (45%), Gaps = 8/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +++FR+ E L + F VG NG GKT++LEAI L ++FR + + Sbjct: 1 MFLKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNL 60 Query: 61 IRHEQEAFVLHGRLQGEERE--TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E + L G+++G+++E +G T K++ + + K +L L+T Sbjct: 61 IRWGSENYFLRGKIKGDQKESVLEVGFTAKPTVKRKLKFNQEEVKKRTDLIGKFITVLLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPW 177 P ++ GGP RR F+D +P + ++LK RNA L+ + L W Sbjct: 121 PMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLSIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLER 236 D++LI I R E G+ + + + L + + + E+ E L R Sbjct: 181 DRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVKDKDEFVEKLGR 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +D +L YT+ G H+ DL I AD + + S+GQ + + AL+ A + Sbjct: 241 NLGKDLRLGYTSVGIHRDDLFIGADKRDITEFGSQGQKRSTVIALKAATFNYYRNVLDTM 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD---ENSKMFTVEKG 353 + LIDD ELD +RR + Q F + E + D + ++F +++G Sbjct: 301 PVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTDLEGIQDYVGKLKDQKQIFLIQQG 359 Query: 354 KI 355 I Sbjct: 360 NI 361 >UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=Geobacter sp. FRC-32 RepID=RECF_GEOSF Length = 364 Score = 343 bits (881), Expect = 5e-93, Method: Composition-based stats. Identities = 90/364 (24%), Positives = 182/364 (50%), Gaps = 11/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ ++ FRN++ L + FN G NG GKT++LE+I+ + ++F++ + + Sbjct: 1 MKLNKIYLQSFRNLQETMLMPAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + +L G ++ + I + D QG K+R+D ++ + + + + TPE Sbjct: 61 VRWGAISSLLKGWVERDGVTREIAVFLDNQG-KKIRVDQKAVTRIDDFFGHLNVVVFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P+ RR +LD F ++ + + + ++LK RN L++ W ++ Sbjct: 120 EVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRG-EKASFDIWTEK 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQR--------GWEKETEYA 231 L+ + I R Y + + ++ E ++ S++ + +A Sbjct: 179 LVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPYHMDLADCRGDVADAFA 238 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + + + T GPH+ D+ +G P++ S+GQ K + AL++A+ E+L + Sbjct: 239 EALAKTATEEERRGTTLAGPHRDDVEFILNGRPLKQFGSQGQQKSYVLALKMAETEYLQK 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + + ++L+DD +SELD ER+ L LK QVF++ S +++ EN + + +E Sbjct: 299 KFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTTSLQNINVDEIENYRTYRIE 358 Query: 352 KGKI 355 +GK+ Sbjct: 359 EGKV 362 >UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=Clostridium RepID=RECF_CLOD6 Length = 371 Score = 342 bits (879), Expect = 8e-93, Method: Composition-based stats. Identities = 96/366 (26%), Positives = 163/366 (44%), Gaps = 14/366 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN + L + N LVG NG GKT+++E+IY L G++FR+ + + Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E + G + + I L K +RI+ K+ EL + + + +PE Sbjct: 61 VRFNSENLYIGGSFSKYNKYSLIELIIGKD-KKGIRINKVPLQKIQELLGNLNVVIFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDK 179 L+ GPK RRAF+D P ++ +N + L QR+ L+ + L +D Sbjct: 120 DLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLDVYDD 179 Query: 180 ELIPLAEQISTWRAEYSAGIA---ADMADTCKQFLPEFSLTFSFQRGWEKET-------E 229 L I R ++ IA +M + S+ + Q E + Sbjct: 180 TLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDTVYNK 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + L N D + T +G HK DL I + S+GQ + +L+L++ E + Sbjct: 240 FLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARLFGSQGQQRTASISLKLSEIELI 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E + ++DD SELD+ R+ LL + L Q+F+++ H ++N +F Sbjct: 300 KNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEVSHKKIFDEKNVTIFN 357 Query: 350 VEKGKI 355 +E G + Sbjct: 358 IENGDV 363 >UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYE1_9FIRM Length = 384 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 164/371 (44%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN + +L L PG L G N GKT++LE+I+ L ++ R+ + Sbjct: 1 MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +QE + ++ + E + LT K+G +++ D K++ L PE Sbjct: 61 IEWDQEQARIEAVIETKNYEIPLALTLTKKG-KVAQVNYLDQSKLSHFVGQFNTVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR----- 175 L+ G P RR FLD P + +RLLKQRN+ L+Q R ++ Sbjct: 120 DMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQVFFE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRG------WEKET 228 ++L + +R E+ + + + L + G E Sbjct: 180 ILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLEYINGSQVYQPLSLEE 239 Query: 229 EYAEVLERN---FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 ++L++ R+R T GPH+ D + + S+GQ + ++ +L+LA+ Sbjct: 240 RIKQLLDQASTYASRERDQGTTLFGPHRDDFMTYVNDKKAQFFGSQGQQRTIVLSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + + G + L+DD SELDD+R+ +L S +K Q ++ + + + ++ Sbjct: 300 IELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDK-VQTILTTATIKGLKLHQLPHA 358 Query: 346 KMFTVEKGKIT 356 ++F + G I+ Sbjct: 359 EIFYISAGNIS 369 >UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RECF_MOOTA Length = 370 Score = 342 bits (878), Expect = 1e-92, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 165/357 (46%), Gaps = 7/357 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 SL +L + +FR+ + PG N + G N +GKT++LEAI L R+FR Q +++ Sbjct: 5 SLQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQLL 64 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 +F + G + + + + ++ I+G +++ EL + P+ P+ Sbjct: 65 TWGASSFQVRGLCHSNGEKIELVINYQQHN-KRLTINGNR-NRLIELLGIFPVIYFGPDD 122 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----QLRPW 177 LL GGP YRR FLD + + + +R+L QRN LR + +L PW Sbjct: 123 LHLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEGELEPW 182 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D +L+ + I R+ + +A +A T + L ++ G + E+AE L+ Sbjct: 183 DIQLLATGKAICEKRSCFLQSLAPRVAATYRDMAGGEELALIYRPGVASQEEWAERLKVG 242 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ER+ Q T GPH+ D DG S+GQ + ++ AL+LA+ + Sbjct: 243 REREVQAGMTLWGPHRDDFTFTLDGHEARYFASQGQQRAIVLALKLAEARYYRELLHVMP 302 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD+ +G L L Q F++ + + S ++ + +G+ Sbjct: 303 VLLLDDVFSELDEAHQGALLELLAGAD-QAFLTTTEVGLLPARLIQRSHLWELARGR 358 >UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=Coxiella burnetii RepID=RECF_COXBN Length = 357 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 185/354 (52%), Gaps = 2/354 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + FRN+ D+ FNF G NG+GKTS+LE+IY L GR+FR+ R+I Sbjct: 3 YIGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + F++ L + +G+ +D GD +RI+G + A +P+ ++ Sbjct: 63 QDNTDRFLIFITLYNGTQFIPLGVERDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L GP+ RR FLDW FH EP FF+ W L+R LKQRNAAL+ ++ WDK L Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALKAKLPLGEITHWDKML 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + E++ R +QFLP + L + RGW ++ E L+ N ++D Sbjct: 183 VEDGERLHQLRQNVVTEFRPLFTQMLQQFLPAYPLIGHYFRGWSEKYSLMEQLQINLKQD 242 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 Q YT GP +AD R+ P +D LS+GQ KL+ AL AQG L ++G +YLI Sbjct: 243 LQRGYTQAGPQRADFRLTLRDLPAQDILSQGQQKLVTYALHFAQGLLLKEKTGISPIYLI 302 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 DD +ELD +R + + +SQVF+S I + +S +F V+ GK+ Sbjct: 303 DDLPAELDANKRDCVIDLVNYLESQVFISGIDPNEIR--LPPHSTLFHVKHGKV 354 >UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax=Bacillales RepID=RECF_STAHJ Length = 371 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 163/371 (43%), Gaps = 18/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + ++RN E L P N L+G N GKT++LE+IYTL ++ R+ + Sbjct: 1 MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E + G L + + K+G +V+++ + ++ + + + L PE Sbjct: 61 IRFNSEYAKIEGVLNYRHGTMPLTMFITKKG-KQVKVNHLEQSRLTQYVGHLNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLR 175 ++ G P+ RR F+D + + +R+LKQ+N L+Q+ L Sbjct: 120 DLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDTTMLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKET------ 228 +++ A ++ R + + + +L+ ++ + Sbjct: 180 VLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLSDMSKGEQ 239 Query: 229 ----EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E +L N +R+ GPH+ DL + + S+GQ + +++LA Sbjct: 240 TLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMDAQTYGSQGQQRTTALSIKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + E G + L+DD SELDD R+ L S ++ + Q FV+ S + + N Sbjct: 300 EIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQH-KVQTFVTTTSVDGIDHEIMNN 358 Query: 345 SKMFTVEKGKI 355 +K++ + +G+I Sbjct: 359 AKLYRINQGEI 369 >UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=Clostridium thermocellum RepID=RECF_CLOTH Length = 369 Score = 341 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 85/369 (23%), Positives = 166/369 (44%), Gaps = 18/369 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+L+++FRN + + S N + G N GKT+++EA++ GR+ R+ + + Sbjct: 1 MYIDRILLKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + F + L+ E I + + V+I+ K+ L + + +PE Sbjct: 61 VNIDGTGFSVLLDLESSEGRKKIEIDYECGKKKVVKINEIPLKKIGNLMGNLLAVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 ++ GP RR F+D +P +F ++L QRN L+++ + L Sbjct: 121 DILIIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLDTLEV 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAA-------DMADTCK----QFLPEFSLTFSFQRGWE 225 WD ++ L+ +I T R+E+ + + D + ++ P L E Sbjct: 181 WDYKMAELSSRIMTTRSEFIKRLCEISKKIHLKLTDGSEIMEIKYSPSVDLH-DLSNPSE 239 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + E+ L + + + T GPH+ D + +G ++ S+GQ + + +L+LA+ Sbjct: 240 IKNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKMFGSQGQQRTSLLSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + E+ + L+DD SELD +RR L ++ Q F++ E + + ++ Sbjct: 300 IEIIKSETDEDPVLLLDDVMSELDFKRREFLLENIR--NVQTFITCTDKELFENRNFGDN 357 Query: 346 KMFTVEKGK 354 VE G+ Sbjct: 358 LYIRVEAGR 366 >UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=Rickettsiella grylli RepID=A8PQC0_9COXI Length = 363 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL FRN+ DL SP FNF+ G NGSGK+S+LEAIY L GR+FRS R Sbjct: 1 MHLFRLKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRA 60 Query: 61 IRHEQEAFVLHGRLQGEERET--AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+++ E F L L G T IGL K +QG +K++ID + + V+ELA L+P+Q I Sbjct: 61 IQYDAERFNLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDN-NTNPVSELAKLLPLQFIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P + LL+GGP+ RR F+DWG FH EP FF W + +LKQRNAAL++ + Q++ WD Sbjct: 120 PNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQRQVPWNQIKIWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 LI A++I+++R Y + + + + + L F +GW+K+ A +L + Sbjct: 180 LALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLNLASILSGSL 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GPH+ADL + +G V + LSRG+ KLL+CAL+LAQG L + + + C+ Sbjct: 240 ERDYKLLYTQFGPHRADLLLSLNGISVHEILSRGEQKLLICALQLAQGLLLKKIAQKSCI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS-DENSKMFTVEKGKITD 357 YL DD SELD ++ L L ++QVF++ I + + K+F V+ G++ + Sbjct: 300 YLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSVETHRLGKIFHVDDGQVIE 359 >UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA14_9CLOT Length = 376 Score = 341 bits (874), Expect = 3e-92, Method: Composition-based stats. Identities = 93/373 (24%), Positives = 172/373 (46%), Gaps = 22/373 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T +FRN++ L PG N + G N GKT+++EAI+ ++FR + R+ Sbjct: 1 MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFRGNKDSRM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ L ERE + + ++ + ++ LA + +P Sbjct: 61 IWFEEQFATLSLSFDDGEREQHAQIRL--GEKNSCTLNRVEQKSLSALAGAFQCVVFSPT 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL----RP 176 ++ GGP RR FLD P + +R+L QRN+ L+++ RY L Sbjct: 119 HLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLRDTIEV 178 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGW----------- 224 WD++L L ++ R +Y + + + L S+Q Sbjct: 179 WDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAFDSLLDHAYTQ 238 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 +K Y LE + ++D + +T G H+ DL + +G V+ S+GQ + + AL+LA Sbjct: 239 DKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVKTYGSQGQQRSTILALKLA 298 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + L +G + L+DD SELD R+ L + ++ ++QVF++ + + + + ++ Sbjct: 299 EARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIR--ENQVFITCCDSSNTLRL--QS 354 Query: 345 SKMFTVEKGKITD 357 ++F ++ GK+ D Sbjct: 355 GRVFHIDGGKLLD 367 >UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQF9_9GAMM Length = 363 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 202/360 (56%), Gaps = 6/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS++ L I++ RNI + A S N + G NGSGKTS+LEAI LG R+FR+ + + Sbjct: 1 MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 ++ EQ + V+ + + + ++G+ + +G++++R +G D ++ LA L+P+Q+I Sbjct: 61 VQTEQASTVVFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDID-LSTLAELIPLQVIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PW 177 + F LL G P RR FLDWG FH + F W +R+LKQRN L+ QLR W Sbjct: 120 SDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLKCGKIDNQLRQVW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+E I ++Q++ R EY + + Q L + + F GW+K+ + EVL N Sbjct: 180 DREFIAFSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFSYGWDKKRQLDEVLASN 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T GP +AD++++ DG + LSRGQ KL++ AL+LAQG R +GR C Sbjct: 240 FERDLRQGFTGSGPQRADIKLKVDGHNAAERLSRGQKKLVVSALKLAQGALFQRMNGRPC 299 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM--FTVEKGKI 355 +YLIDD SELD L L+ + +Q F++ + + + + F + G I Sbjct: 300 IYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLNAFWHSQTDIATFRIADGDI 359 >UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax=Lactobacillaceae RepID=RECF_LACH4 Length = 375 Score = 337 bits (866), Expect = 3e-91, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 169/372 (45%), Gaps = 18/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++++FRN++ D+ P N +G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E L G ++ + + + + ++G KV I+ + K+++ + L +PE Sbjct: 61 IGFGGEYTNLLGHVRKSQVDLTLRVLITQKG-KKVWINRVEQAKLSKYVGQLNAILFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ P RR F+D + S +++L Q+N L+Q+ + + L Sbjct: 120 DLELIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGW------EKET 228 +L +A ++ R ++ ++ +D L L ++ + Sbjct: 180 VLSDQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEADDTVE 239 Query: 229 EYAEVLERNFER----DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + + NFER + + T GPH+ D+ + DG S+GQ + + +++LA Sbjct: 240 EIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHLYASQGQQRSIALSVKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + + + + + L L+DD SELD R+ L + + +Q F++ E + + Sbjct: 300 EIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHGK-TQTFITTTDLEGISWEIIKK 358 Query: 345 SKMFTVEKGKIT 356 +++ ++ GKI+ Sbjct: 359 PRVYHMQSGKIS 370 >UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=Selenomonas RepID=C4V1P7_9FIRM Length = 377 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 105/374 (28%), Positives = 163/374 (43%), Gaps = 20/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R +R+ ET LA PG +GAN GKT+++EA+Y GR+ R+ + Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + + + + A+ T + ++ G + +L ++PM L +PE Sbjct: 61 IRVGADGAHIALSFRRHDVPGALSFTFARGARRRIEYAGESL-RQRDLVGILPMVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 L+ G P RR +LD P ++ R+LKQRNA L+ + + L P Sbjct: 120 DLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAPDDLLP 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-------QRGWEKE-- 227 WD +L A I T R A + A A LT + + G + + Sbjct: 180 WDAQLAKSAAYIVTRRTSAVAQLGALSARVQSVLAAGEELTLVYDIAGAAPESGAKDDMT 239 Query: 228 ----TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 Y ++L RD T GPH DL +R G + S+GQ + AL+L Sbjct: 240 EQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLRSFGSQGQQRTGALALKL 299 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A+ +L G + L+DD SELD +RR L ++ Q F++A A + Sbjct: 300 AELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTFITATDAAYFPAERMG 359 Query: 344 NSKMFTVEKGKITD 357 + VE GK+ D Sbjct: 360 TYR--YVEAGKVRD 371 >UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTW3_9GAMM Length = 357 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 126/357 (35%), Positives = 192/357 (53%), Gaps = 2/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + FRN+ L P NF+ G N SGKTS+LEAI+ L GR+F S+ ++ Sbjct: 1 MTLARIEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR AF L +Q R T +G+ + G ++VR +G D ++E+A L+P +I E Sbjct: 61 IRQGCRAFTLGASIQVPPRTTWLGMERTP-GRTRVRCNGQDIWNLSEIAWLLPTHVINTE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L G P+ RR+ LDWG FH E + W +R L+QRNAALR + R W+ + Sbjct: 120 SQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG-DSQLARAWEAD 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L+ AE + + R Y + +++LPE L + FQ GW + + VL + R Sbjct: 179 LVTAAEAVDSSRRCYLNALWPHWHAFIEEWLPELELHWDFQSGWPRRDDLRGVLAQARGR 238 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 + + +T +GPH+ DLR A LSRGQ KL ALRLAQ E + +R + L Sbjct: 239 ELERGHTLYGPHRGDLRFIAGDVGAAQRLSRGQQKLAAIALRLAQAELTLKNGQQRPVIL 298 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 +DD A+ELD R + ++L +Q+ ++A+S ++ D ++F VE+G + Sbjct: 299 VDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQNELVLPGDGRFRVFHVEQGCYCE 355 >UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=Nitrosococcus oceani RepID=RECF_NITOC Length = 363 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 126/361 (34%), Positives = 193/361 (53%), Gaps = 5/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L IR+FRN++ +L S G N L GAN SGKTS LEAIY LG GR+FR++Q+ Sbjct: 2 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E+ + +++ G+ G + RI+ K ++LA +P+ ++ Sbjct: 62 IQAGMESLRVVAKVKQVGGSHTAGVEFGPAG-FRARINKDTVKKRSQLATQLPLLYMSSY 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPWD 178 +L+GGP+YRR +LDW FH EPGF W +R LKQRN LR + + +++ W+ Sbjct: 121 SHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLRVHKPSWQQEINAWN 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL--PEFSLTFSFQRGWEKETEYAEVLER 236 K+L EQI++ R + ++ P +T F++GW + E+L Sbjct: 181 KKLSTYGEQITSLREAILFKLQDSVSQLFTALAHQPISPVTMEFKQGWARTVRLEEILNE 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + DR YT +GPH+A++ DG V + LSRGQ K+ +L L+Q L R + Sbjct: 241 SLNYDRAAGYTRYGPHRAEVAFYVDGKDVREILSRGQQKVFCYSLALSQANLLYRTKEQN 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 C++LIDDF SELD + R L + L QVF + I + + N K F V+ G++ Sbjct: 301 CIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHPNIKEFHVKLGQVE 360 Query: 357 D 357 + Sbjct: 361 E 361 >UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV39_9GAMM Length = 370 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 190/360 (52%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L++L I RN++ L+ P N + GANGSGKTS+LE+IY LG GR+FR + V Sbjct: 1 MFLSKLDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVV 60 Query: 61 IRHEQEAFVLHGRLQGE--ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + ++ RL + +G+ + +G + RIDG +L +P+QLI Sbjct: 61 VNSNAAELIVSARLNRDVSGSSHQLGIKRTSKGQFEARIDGQALQSAVQLVSELPLQLID 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPW 177 F LL GGP RR FLDWG FH E + W ++ LKQRN LR E L W Sbjct: 121 AHSFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLSTW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ELIPL EQI+ +R Y + ++ + F ++ + GW+ +V ++ Sbjct: 181 TAELIPLCEQITEFRQAYLSQLSKQIQIALSAFDGLGEISLEYYCGWDDSRSLQDVYVQD 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 RD T HG H+AD+RI+ DG P D LSRGQ+KLL+ AL+LAQ + G C Sbjct: 241 QARDIATKTTNHGAHRADIRIKVDGQPAADHLSRGQIKLLVYALKLAQAGHYREKLGESC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE-NSKMFTVEKGKIT 356 L+L+DD +ELD + RG + + L Q F++ + + + ++ KMF +E G+ + Sbjct: 301 LFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLLEKMPHKMFHMEHGEAS 360 >UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY44_9BACL Length = 378 Score = 337 bits (864), Expect = 4e-91, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 164/378 (43%), Gaps = 23/378 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + P N LVG N +GKT+++E+I+ L G+++R+ Sbjct: 1 MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + A + + +RE I L + +G +I G K+ + + + L +PE Sbjct: 61 IMFGETATAMSCIVNKNDRELDIMLGINNKG-KSAKIAGIKKTKLTDFVGELNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-------EQ 173 ++ G P RR F++ + + + + LLKQRN+ L+ + + Sbjct: 120 DLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEMSLAY 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAE 232 L +L+ +A I+ R + I+ + +L ++ AE Sbjct: 180 LETLTSQLVKVALYITKERVSFVRDISKLTYKNMLNISNGQETLKIKYKSSVLDALNIAE 239 Query: 233 VLERNFER-------------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 + + +F D T GP DL + + S+GQ + ++ Sbjct: 240 INDESFTEENLTKVMMKKSFDDIMRGSTKIGPQHDDLEFYINDLDAKMYASQGQQRSIVL 299 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 +L+LA+ FL ++G + L+DD SELD R+ L + Q F++ S + + Sbjct: 300 SLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSISDIKE 358 Query: 340 MSDENSKMFTVEKGKITD 357 + +K+F +E G I++ Sbjct: 359 DLLKKAKVFKIEDGNISE 376 >UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax=Francisella RepID=RECF_FRATM Length = 349 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 1/350 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L +++FRNI NF+VG NGSGKTS+LE+IY L H R+FRS Q+ R+ Sbjct: 1 MYISNLRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + F+++ + + E I L++ K ++ +++ E+ +P+QLI PE Sbjct: 61 INHNADEFIIYTKAYNPD-EITISLSRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F ++N G + R LDWG F+ + F W K L+KQRN+AL+Q Y + DK+ Sbjct: 120 SFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYPYSYILSIDKK 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L AE + R Y + + + F P L + RGW A+VLE +F Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFNPNLQLDIDYFRGWNLHKSLAQVLEESFNY 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D + T HGPHKAD+ + P++D SRGQ KLL+CAL+LAQGE E+ +C+YL Sbjct: 240 DNKYKVTNHGPHKADIVLSVSHKPIQDIFSRGQQKLLICALKLAQGEIHNSENDNKCIYL 299 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 IDD SELD L + LK +SQVF++ + + D NS + + Sbjct: 300 IDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYILEI 349 >UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=Marinomonas RepID=RECF_MARMS Length = 368 Score = 336 bits (863), Expect = 6e-91, Method: Composition-based stats. Identities = 135/360 (37%), Positives = 197/360 (54%), Gaps = 5/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL I RN+ + SP N +VG NGSGKTSVLEAI+ L GR+FRS + Sbjct: 1 MPLVRLDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTY 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+HE +A ++ +L Q + +GL + + G VRI G V ELA +P+QLI P Sbjct: 61 IQHENDACIVFAQLHQKQGSPIRVGLQRHRDGQIDVRIQGQRAQSVIELAERLPVQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWD 178 + F LL G P RR F+DWG FH + F AW ++ LKQRN LR+ L +D Sbjct: 121 DAFRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLAAFD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +ELI L EQ++ R Y + E S++ F +GW+ + A +E Sbjct: 181 QELIRLGEQVNQSRKAYVEKLTPHFVKVLSLLTTELSVSLQFFQGWDAQKNLAMAVEAGR 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GP +ADLR++ DTLSRGQ KL++ AL++AQG+ L GR + Sbjct: 241 ERDIELGYTHTGPQRADLRVKTATGDALDTLSRGQQKLVVSALKIAQGQLLIDM-GRPLV 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE--HVIDMSDENSKMFTVEKGKIT 356 +L+DD +ELD R L L++ SQ+F++++ + + + F++ G+++ Sbjct: 300 FLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTDFTWADTTDVRQFSMTNGELS 359 >UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=Geobacter RepID=RECF_GEOMG Length = 365 Score = 336 bits (863), Expect = 7e-91, Method: Composition-based stats. Identities = 101/365 (27%), Positives = 166/365 (45%), Gaps = 11/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T++ I FRNI A++ FN L GANG GKTSVLEAIY LG ++FR + + Sbjct: 1 MFVTKIQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + +L G + + I L K+G K R+D ++A+ + + +PE Sbjct: 61 VSWNTPHALLRGWAERDGVGREIALYLGKEG-RKARVDQKPVTRLADFFGNVNAVVFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + GP RR +LD F + G+ RLLKQRNA L++ +R E L W + Sbjct: 120 EIAMARSGPDLRRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSR-EGLDIWTGQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQR--------GWEKETEYA 231 L ++ R Y A I + ++ E +++ E Sbjct: 179 LAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPHLTTPDLVSREGTDALL 238 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 + + + + T GPH+ D+ +G + S+GQ + + AL++A+ E+L R Sbjct: 239 ALFGAHEAEELRRGTTVVGPHRDDVDFVLNGRVIRTHGSQGQQRSFVLALKMAEIEYLER 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + + L+DD +SELD +R L + L+ + QVF++ + F V Sbjct: 299 LNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVSTLRLAGIATHASFHVS 358 Query: 352 KGKIT 356 +G +T Sbjct: 359 RGTVT 363 >UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax=Thermoanaerobacterales RepID=RECF_THEPX Length = 362 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 157/366 (42%), Gaps = 18/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN++ + G N G N GK+++LE+I L GR+FR + + Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ F + + E + I K + ++++G +EL + + +PE Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL---RQVTRYEQLRPW 177 ++ GP +RR +LD E + ++L RN L ++ L + Sbjct: 121 DLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKSILEIF 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETE------- 229 D +L+ +I R Y + ++ + E + + G + ++ Sbjct: 181 DDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR 240 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L +N + D + T GPH+ D +I +G S+GQ + L+L++ E L Sbjct: 241 LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEIL 300 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E+ + + L+DD SELD+ R+ + RLK Q F++ + + F Sbjct: 301 KKETSEKPVLLLDDVMSELDENRKKYVLERLKGF--QTFITHTTKRDLKGD-----CYFK 353 Query: 350 VEKGKI 355 + G + Sbjct: 354 ISNGVV 359 >UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=Desulfuromonadales RepID=RECF_GEOLS Length = 368 Score = 336 bits (862), Expect = 8e-91, Method: Composition-based stats. Identities = 100/363 (27%), Positives = 178/363 (49%), Gaps = 9/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ + +RNI+ A + + L G NG GKT+ LE++Y LG+ R FR+ ++ + Sbjct: 1 MFLKQVWLEQYRNIQKACIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + + G + E+ I L + +V ID H+ A+L + + + +P+ Sbjct: 61 ISHGSRSAAVRGLVLAAGVESTIVLHVE-NSTRRVTIDDKAVHRAADLHGKLAVVVFSPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ GP+ RR +LD + ++ F + + R+LKQRNA L+ + L W ++ Sbjct: 120 DTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLK-TNQQAGLDLWTEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQR-----GWEKETEYA-EV 233 L ++ R Y++ + + +Q E ++ +Q E TE V Sbjct: 179 LATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPDVICTAEENGTELLLNV 238 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 E+D + T GPH+ DL P++ S+GQ + + AL++A+ + L Sbjct: 239 FRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLKSFGSQGQQRSFVLALKMAELDHLQETF 298 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G L L+DD ASELD ER L S ++ + QV ++ + + ++SK+F VE+G Sbjct: 299 GEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQQDSKLFRVEEG 358 Query: 354 KIT 356 ++T Sbjct: 359 RLT 361 >UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RECF_THICR Length = 362 Score = 336 bits (861), Expect = 9e-91, Method: Composition-based stats. Identities = 125/359 (34%), Positives = 201/359 (55%), Gaps = 4/359 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + ++ FRNIE A L G N +VG N +GKT+++EAI+TL GR+FR+ + ++I Sbjct: 3 KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + Q VL G L +R IGL + ++IDG A+++ +P+QL+TPE Sbjct: 63 QQNQSELVLFGTLTEADRIHKIGLARTSD-KVTLKIDGELAKTQADMSAKLPVQLLTPES 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 LL GPK RR F+DWGCFH+ F W + +R LKQRN AL++ Q++ WD +L Sbjct: 122 HRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKKRLPASQIQLWDAQL 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL--TFSFQRGWEKETE-YAEVLERNF 238 + AE+I RA+Y + + + C+ +PE ++ ++ GW K E Y ++L NF Sbjct: 182 VDAAEKIDVIRADYITRLTPYLVEFCQALMPEITVSPECHYRPGWPKTAESYRQLLADNF 241 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 +D +T +G H+AD++ R +G LSRGQ KL +CAL LAQ + S + Sbjct: 242 AKDTLQGHTQYGSHRADIKFRFNGQEALMILSRGQQKLFVCALLLAQATLYQQHSQNPVI 301 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 LIDD +ELD + R L L Q +++ + + + + E +K++ ++ G++ + Sbjct: 302 MLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKIWRIQHGELIE 360 >UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax=root RepID=RECF_BACV8 Length = 371 Score = 335 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 174/365 (47%), Gaps = 8/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R+ I +++N+E A+L SP N +G NG GKT++L+A+Y L ++ + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 61 IRHEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 IRHE E FV+ G + ++ E + ++ + + + + +++++ +P+ +++P Sbjct: 61 IRHEGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKRNKKEYNRLSDHIGFIPLVMVSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPW 177 L+ GG RR F+D + + A + L QRNA L+ Q E + W Sbjct: 121 ADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEELMLVW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ++ + E + R+E+ A + ++++ + Sbjct: 181 EEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMSGGLLDIIKES 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG-RR 296 RDR + Y+ G HK DL ++ P++ S+GQ K + AL+LAQ +FL + G Sbjct: 241 RRRDRVMGYSLKGVHKDDLIMQLGDFPIKREGSQGQNKTYLIALKLAQFDFLKKTGGNTT 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH---VIDMSDENSKMFTVEK 352 L L+DD +LD R + + + Q+F++ + +H ++ + K+F VE Sbjct: 301 PLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNRDHLDKILKKIEREYKVFAVED 360 Query: 353 GKITD 357 G++T+ Sbjct: 361 GEVTE 365 >UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=Alteromonadales RepID=RECF_PSEHT Length = 364 Score = 334 bits (856), Expect = 4e-90, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 211/361 (58%), Gaps = 6/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+ L ++ FRNIE L G N + G NGSGKTS+LEAIY L HG++FR+ + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H+QE FV+HGR + IG++K + G++ ++I G K++ELA LMP+Q+ITPE Sbjct: 61 IAHQQEQFVIHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQIITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--EQLRPWD 178 ++L GGPK RR FLD G FH E FF W + ++LKQRNA L+ + +Q++ WD Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQIKFWD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMAD-TCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 KE + LAEQI+ R Y + D C + L SF GW++ ++ LE N Sbjct: 181 KEFVRLAEQINKLRMAYISRFKQQFFDKMCAELTLIRDLEISFNAGWKESESLSDALELN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T+ GPHKAD G+ VE+ SRGQLKLL+ AL++ Q + E+ ++ Sbjct: 241 FERDARQGFTSKGPHKADFSFSVAGSSVENIFSRGQLKLLLYALKVTQNSLIESETDKQS 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQ---VFVSAISAEHVIDMSDENSKMFTVEKGK 354 + LIDD SEL ++ + + L SQ + + S V++ +MF V+ G Sbjct: 301 ILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPMQRELQMFHVKHGN 360 Query: 355 I 355 + Sbjct: 361 L 361 >UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=Veillonella RepID=D1BQ80_VEIPT Length = 366 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 163/365 (44%), Gaps = 14/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + + +P L G NG+GKT++LE+IY G++ R+ + Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + + + ++ + + +QG +R++ T EL + + PE Sbjct: 61 LMFNAEEAGIVVKFEKKDTPQKVNIKLFRQGAKDIRLNDTKI-SQKELIGTLNTVIFCPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWD 178 L+ G P RR FLD ++ RLL+QRNA L++ L WD Sbjct: 120 DLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPLEEWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK-------ETEY 230 +L +A I R E I + ++ LT +++ + + + Sbjct: 180 LQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYTKEGF 239 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E ++ +DR T+ GPH+ DLR +D ++ S+GQ + + +L+L++ EF+ Sbjct: 240 YERIKAALPQDRHRLSTSVGPHRDDLRFFSDAMDLKKFGSQGQQRTAVLSLKLSELEFIK 299 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 E G + L+DD SELD+ RR L + + Q F++ D+ ++ + + Sbjct: 300 SEVGEYPVLLLDDVLSELDESRRVNLLQFIH-KRIQTFITTTDIHDFKDL--KSVQFISC 356 Query: 351 EKGKI 355 E G + Sbjct: 357 EGGNV 361 >UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=Bacteria RepID=B0N231_9FIRM Length = 365 Score = 331 bits (849), Expect = 2e-89, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 167/364 (45%), Gaps = 12/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN + N L+G+NG GKT+++EAIY L G++F++ ++ Sbjct: 1 MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFKTHINKQM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E + G + + ++ + + +ID D +K++E L+ + + P+ Sbjct: 61 IMFDCEFAKVKGEVTSNNKLRSLEMILGSDF-KRAKIDDQDIYKISEYVGLLNVVVFVPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQLR 175 L+ G P RR F+D P + S LLK+RN L+ E L Sbjct: 120 DLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRDGDEYLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL--PEFSLTFSFQRGWEKETEYAEV 233 D+++ L ++ R ++ + + ++ + ++E Y + Sbjct: 180 VLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQELTYENI 239 Query: 234 L---ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 L ++N +RD + + G HK DL+I +G + S+GQ + ++ +L++A E + Sbjct: 240 LALYKKNHQRDIRYMQSHLGIHKDDLKIFMNGNAADLFASQGQQRTIVLSLKIALIELIK 299 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 E G + L+DD SELD+ R+ +L L Q F++ S + + E +K + Sbjct: 300 DEIGEYPVLLLDDVLSELDEARKNMLLDILNQK-IQTFITTTSIDGINHQIVEKAKKIYI 358 Query: 351 EKGK 354 + GK Sbjct: 359 KGGK 362 >UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=Prevotella RepID=D1P8T5_9BACT Length = 405 Score = 331 bits (848), Expect = 3e-89, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 173/363 (47%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I +F+NI++A+L LSP N L+G NG GKT+ L+AIY L R+ + ++ Sbjct: 41 MILKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQI 100 Query: 61 IRHEQEAFVLHGRLQGEERETA-IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H++ F+L G ++ E + + + + + ++++ L+P+ L++P Sbjct: 101 ITHDEPFFMLEGNYDNDKGEIENVYCGMKRGTKKHFKRNKKEYKRLSQHIGLIPLILVSP 160 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--QLRPW 177 +L+ GG + RR +D + + A SN + L+QRNA L+ + L W Sbjct: 161 SDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDITILELW 220 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ++++ E + R + + +Q + + +V++R+ Sbjct: 221 EQQMASNGELLYQKRQAFVDELVPLFQQIYQQISGDKEQVRLHYVSHCQRGPLLDVIQRD 280 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE-SGRR 296 +DR + Y+ HG H+ DL P++ S+GQ K + AL+LAQ FL R S Sbjct: 281 RFKDRAVGYSLHGVHRDDLEFLLGDYPMKREGSQGQNKTFVIALKLAQFTFLQRTSSNTL 340 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH---VIDMSDENSKMFTVEK 352 L L+DD +LD +R + + Q+F++ + +H ++ + +F VE Sbjct: 341 PLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFITDTNRDHLDKILHNMQGDHTIFYVEN 400 Query: 353 GKI 355 G+I Sbjct: 401 GEI 403 >UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL1_HALO1 Length = 382 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 168/381 (44%), Gaps = 28/381 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + RN+ L P FN G NG GKT++LE IY +G R+FR+ ++ + Sbjct: 1 MLVRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ + R+Q E L + ++G +VR+DG +++ + L PE Sbjct: 61 IAFERDRAYIGARIQRGGLERVYELVQRQRG-RQVRLDGKAVRPISKYFGDFNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV--------TRYE 172 + G P RR FLD F+ P + +++K RNA LR++ + Sbjct: 120 DLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLRQAGD 179 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF----------------LPEFSL 216 L +D++L L + +R + I + + + + S Sbjct: 180 FLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQSITHTGLAVDVSYASAVDITQASD 239 Query: 217 TFSFQRGWEKETE-YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 + G E+ T A + RD ++ GPH+ DL DG P S+GQL+ Sbjct: 240 SAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFELDGHPAAAFASQGQLR 299 Query: 276 LLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 L+ A + A+ + L G + L+DD +SELD R G L LKA + Q F++ Sbjct: 300 ALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFITTTHPR 359 Query: 336 HVIDMSDENSKMFTVEKGKIT 356 HV+ S+ + VE G +T Sbjct: 360 HVLLSSERED--YRVEGGLVT 378 >UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVA0_DESAS Length = 376 Score = 330 bits (846), Expect = 6e-89, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 20/375 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I +FRN ++ + N +G N GKT++LEAI L GR+FR+ + Sbjct: 1 MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E L L+ + +I ++ + ++I+ + K ELA + TP+ Sbjct: 61 INFDSEQSKLKTELKAYNQNYSIDISLSRTKPKIIKINNSTTSKP-ELATNFGTIVFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQL 174 +++ G PK RR FLD P + + N +++L QRN L+++ + L Sbjct: 120 QLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQADTFDLL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEV 233 WD +LI +I R E + Q + LT ++ + + E Sbjct: 180 ELWDNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSLNLNSNFREE 239 Query: 234 L---------ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 L +N ++D T GPH+ DL + + D S+GQ + ++ L+ A Sbjct: 240 LIYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNITDFGSQGQQRTIILTLKFA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + L+DD ELD +R+ + L QVF+++ + Sbjct: 300 IINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLL-NKDVQVFITSTGMANTEKNLINI 358 Query: 345 SK--MFTVEKGKITD 357 K +F V G + + Sbjct: 359 KKNAIFNVRSGLVCE 373 >UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax=Bacteroidetes RepID=RECF_FLAJ1 Length = 359 Score = 329 bits (843), Expect = 1e-88, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 6/356 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +++N A N VG NG GKT+VL+AIY L +G+++ + + Sbjct: 1 MHLNKLSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H +E FV+ L+ +R I + K ++ +G K ++ +P+ +I+P Sbjct: 61 IKHGEEFFVIDAELEKNDRTEQIVCSLKKGQKKVLKRNGKAYDKFSDHIGFIPLVIISPA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQLR 175 L+ G + RR F+D + + ++++ QRNA L+ + L Sbjct: 121 DRDLIVEGSETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDNDTLS 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 ++++L + I R E+ + E + +L+ Sbjct: 181 IYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLVYESHLFEKDLLTLLQ 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 N +DR L YT+ G HK DL D P++ S+GQ K + AL+LAQ EFL ++SG Sbjct: 241 ENINKDRALHYTSSGIHKDDLSFEIDSHPIKKFGSQGQQKSFLIALKLAQFEFLKKQSGV 300 Query: 296 RCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + + L DD +LD+ R + + T Q+F+S E + + + + Sbjct: 301 KPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDTHPERTEAIVKSTHQTYKI 356 >UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI71_9FIRM Length = 369 Score = 327 bits (839), Expect = 4e-88, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 172/372 (46%), Gaps = 19/372 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +R++RN + L L+P N L G+N GKT++LE++ + GR+FR+ G + Sbjct: 1 MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVR-IDGTDGHKVAELAHLMPMQLITP 119 I + R+ + ++ D +K+ ++G ++ + A + L TP Sbjct: 61 ILWGENNCTASARVCNRMGRETLKVSFDAGSRNKIFSVNGLTMNR-SNYAGRLVTVLFTP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLR 175 E +++ G P RR F D P + L+++++QRN L++ + ++L Sbjct: 120 EDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQELA 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEV- 233 W+++L L+ +I R I + + + SL +Q + + Sbjct: 180 SWNEQLAILSAKILIKRVTAIRRIGLLARLSHRNLTGRDESLEILYQSFLPLDDGILDAQ 239 Query: 234 ---------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 LE + +L T GPH+ D+ +G S+GQ + L+ AL+LA Sbjct: 240 VIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARLYASQGQQRTLVLALKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EF+ E+G + L DD SELD+ RR LL + + Q F++ AE + E+ Sbjct: 300 ELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETIDG-RIQTFITGTEAEKLRQF-KES 357 Query: 345 SKMFTVEKGKIT 356 KMF V +G++ Sbjct: 358 GKMFKVREGEVV 369 >UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=Cystobacterineae RepID=RECF_MYXXD Length = 380 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 156/371 (42%), Gaps = 19/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + DFRN+ L S VG NG GKT++LEA+Y L + R+ ++ + Sbjct: 1 MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60 Query: 61 IRHEQEAFVLHGRL--QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + + GR +G ERE A+ + G + +DG + + + + T Sbjct: 61 VRWGSQGARVTGRFLLKGAEREIAVEVG---GGTRQAFVDGKKASSLEDYFGGVSVVAFT 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--QLRP 176 P+ ++ GGP RR FLD F+ P F R LK RN LR+ + L Sbjct: 118 PDDLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYLEA 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY------ 230 +D+ L +I + R A +A T R E ++ Sbjct: 178 YDETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADET 237 Query: 231 ------AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E L RD + +T+ GPH D+ + G S+GQ + L+ ++A Sbjct: 238 ALAAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIA 297 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E L G L L+DD +SELD ER L L + +QV ++ V + ++ Sbjct: 298 EIENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADD 357 Query: 345 SKMFTVEKGKI 355 + V G++ Sbjct: 358 TLWLDVHGGQV 368 >UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLI8_9GAMM Length = 370 Score = 326 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 186/360 (51%), Gaps = 7/360 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L I RN+ A L N + G NGSGKTS+LEA + LG R+FR+ +I Sbjct: 4 LASLNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLIT 63 Query: 63 HEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H ++ +V+ G + ++G+ + K G +R+ G V++LA +P+ LI + Sbjct: 64 HGEQTYVVQGNRESPGGGCVSLGVQRQKGGGMSLRVAGEPSRSVSQLADELPLLLINADS 123 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKE 180 F LL G P RR F+DWG FH E +R L QRN LR+ +L W ++ Sbjct: 124 FDLLVGEPANRRRFMDWGVFHVEHNLRDHRRRFQRALTQRNHLLRRGKLDASELEVWTRD 183 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFE 239 L AE +S R + A + + PE + +++RGW+ YA+ L+R+ Sbjct: 184 LAVHAELVSAGRDRFLAALKEVFEPLVNELAPEIGPVDLAYRRGWDASLGYADALQRSLA 243 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D++ +T GP +AD+R+ G DTLSRGQ KLL+CAL+LAQG+ L + G LY Sbjct: 244 SDQEQGFTQSGPQRADIRVTVGGYSAADTLSRGQQKLLICALKLAQGQILAGQRGG-VLY 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS---DENSKMFTVEKGKIT 356 LIDD SELD ER + L A + Q ++ +S + MF VE+G++T Sbjct: 303 LIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAIPVEWLGSGAEVAMFHVEQGRVT 362 >UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=Desulfitobacterium hafniense RepID=RECF_DESHD Length = 365 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 171/366 (46%), Gaps = 16/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRN + ++ PG L G NG GKT++LE IY L G+++R + + Sbjct: 1 MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R + F L+G + R+ + + + ++I+ K++E + + +P+ Sbjct: 61 ARWGENEFHLYGDFIVQRRKLRLE-SHYQDKRKIIKINQIPCRKLSEYVGTINVVFFSPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-----TRYEQLR 175 ++ GGP RR FLD + + ++L+Q+NA L+Q ++ Q+ Sbjct: 120 DLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKSQIAQIE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETE----- 229 W+++++ + +I R E++ ++ + Q + LT + + E Sbjct: 180 LWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGKNNLEEALAA 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + ++L + + GPH+ D+ + + S+GQ + ++ + +LA+ E + Sbjct: 240 FPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSARLYGSQGQQRSIVLSTKLAELEVI 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E G L L+DD SELD RR L K+ Q Q ++ SAE + + S + Sbjct: 300 RQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ-QTIMTMTSAETL---TQRASLLLK 355 Query: 350 VEKGKI 355 VEKG+I Sbjct: 356 VEKGQI 361 >UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=Pelotomaculum thermopropionicum SI RepID=RECF_PELTS Length = 364 Score = 326 bits (836), Expect = 9e-88, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 156/370 (42%), Gaps = 20/370 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL + +FRN + FN L G N GKT++LE+IY GR+FR+ + + Sbjct: 1 MLLRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E+E + + RE + +T G ++ ++G K + L TP+ Sbjct: 61 IKREKEFSSIRCLFETRGREVEVKVTLVP-GRKRIEVNG--VLKSGHPFGWPGVVLFTPD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ----LRP 176 ++ G P RR FLD+ P + R+L QRNA LR+ L Sbjct: 118 DLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAKEKRTTGGPLEV 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETE------ 229 WD++L ++ R + ++ + S+ + E Sbjct: 178 WDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELTEGAENIEISYLSSLKIGEECGEDEI 237 Query: 230 ---YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 ++ L + + T GPH+ DL I+ DG S+GQ + ++ L++ Sbjct: 238 YERFSGELRLVRDEEIARMQTLVGPHRDDLHIKVDGHDARVYCSQGQQRTIVLTLKVFLI 297 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E E+G + L+DD ELDD RR L RL Q F++ D+ +K Sbjct: 298 EQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCTRVN--FDIEGFKAK 354 Query: 347 MFTVEKGKIT 356 +FTV G++T Sbjct: 355 VFTVSGGEVT 364 >UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=root RepID=A7AC47_9PORP Length = 367 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 168/361 (46%), Gaps = 7/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I +++NI A+++ SP N G NG GKT++L+A++ L ++ + ++ Sbjct: 1 MILKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q+ VL G E RE I ++ + + + + K++E L+P+ +++P Sbjct: 61 INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEHIGLLPLVMVSPA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 L+ GG + RR FLD + + A + L QRN+ L+ L + Sbjct: 121 DSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCIDASLYEVLEM 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVLERNF 238 +L + R + + + + EK + A++L N Sbjct: 181 QLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLEKGS-LADMLAANR 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR L YT+ G HK +L + +G + S+GQ K + AL+LAQ FL+ R + Sbjct: 240 ERDRILGYTSTGIHKDELEMTLNGHLIRRVGSQGQNKTYLIALKLAQYVFLSCRGQARPI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISA---EHVIDMSDENSKMFTVEKGK 354 L+DD +LD +R + + Q Q+F++ + + ++ + +F VE+G+ Sbjct: 300 LLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQSINHGYALFRVEQGE 359 Query: 355 I 355 + Sbjct: 360 V 360 >UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=Legionella pneumophila RepID=Q5X988_LEGPA Length = 353 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 123/358 (34%), Positives = 194/358 (54%), Gaps = 11/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ + I +FRNI + L L+P FN + G NGSGKTS+LEA+Y L +FRS ++ + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q + E+ I + K ++++++ ++LA+ +P Q+I + Sbjct: 61 ISYGQNQLNVFAH---AYDESTISVQKSITDGTQIKLNNQFCCTTSQLAYALPCQVIYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR+ LDWG FH + + W + KR+L QRNA L+ YE PWD++ Sbjct: 118 IFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFIPWDQQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET---EYAEVLERN 237 L LA Q+ R +Y S T + +GW+++ E+L+++ Sbjct: 178 LSQLANQLDKARNDYFFQWQPKFYQVLSDLT-NISCTVEYYKGWDRKNAGQNIEELLQKS 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ DR YT +GPH+ADL I + V+ TLSRGQ K+++ AL+LAQG+ L + C Sbjct: 237 FDSDRNKLYTQYGPHQADLIISIEQYRVKHTLSRGQQKIILIALKLAQGQLL----DKDC 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LYLIDD A+ELDD + L L + Q ++ + + D+ +S +F V G I Sbjct: 293 LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSGLFEVNCGAI 350 >UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax=Actinobacteria (class) RepID=RECF_CLAMS Length = 408 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 102/392 (26%), Positives = 159/392 (40%), Gaps = 39/392 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFRN AD+AL PG VG+NG GKT+++EA+ L + R + Sbjct: 1 MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E+ V+ LQ RE + + ++ ++ +++GT K EL L PE Sbjct: 61 VRQGAESAVIRALLQHAGRELRVEVQINRSAANRAQVNGT-ATKTRELPRYFSSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-------RYEQ 173 L+ G P RR LD P S+ R LKQRN L+ + Sbjct: 120 DLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQLST 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTC-----KQFLPEFSLTFSFQRGWEKET 228 L WD+ L+ + QI R + ++A P S E Sbjct: 180 LDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILADDPGED 239 Query: 229 E----------------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 + + + R R+ + T GPH+ D+ R +G P + Sbjct: 240 DVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLNGLPAK 299 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESGR-RCLYLIDDFASELDDERRGLLASRLKATQS 325 S G+ A++LA E L R+S + ++DD +ELD RRG LA + + Sbjct: 300 GYASHGESWSFALAIKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEAVTGFE- 358 Query: 326 QVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 QV ++A E V + N+ + G I + Sbjct: 359 QVLITAAVFEDVPEHLAANAV--HIRAGAIVE 388 >UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GFJ4_9CORY Length = 374 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 151/362 (41%), Gaps = 16/362 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFR+ DL L PG GANG GKT+++E+IY L + + R + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + L + RE + +T + +++ T EL + L +PE Sbjct: 61 VRAGADVAQLAATVVSGGRELVVRMTVKPHAANLAQLNRTRLRHPRELLGGVRCVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR------YEQL 174 L+ G P+ RR +D P F + +R+LKQRNA L+Q + L Sbjct: 121 DLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHGML 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSF------QRGWEKE 227 WD +L L ++ T R+ + + + P S+ + + E Sbjct: 181 DVWDSQLASLGAELVTARSALITRLHPLVEAAYLEIAPHSRPPAISYLTRDQAETTADTE 240 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 L R+ T GPHK DL + AP + S G+ AL++A Sbjct: 241 ALLLTSLAEIRPREIDAGRTLIGPHKDDLGLYLGEAPAKGFASHGETWSFAIALKIAVFR 300 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI-DMSDENSK 346 G + ++DD +ELD+ RR L S +++ + QV ++ + D++ + Sbjct: 301 LF-STGGHIPILILDDVFAELDNPRRQALTSMIRSAE-QVLITTAVPTDIPTDLTHTDHT 358 Query: 347 MF 348 + Sbjct: 359 VL 360 >UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RECF_CARHZ Length = 353 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 94/360 (26%), Positives = 173/360 (48%), Gaps = 11/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL + +FRN E + SPG + GANG GKT+++EAIY L G++FR + + Sbjct: 1 MFVDRLQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRG-KDNSL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E+F + ++ ++T +G+ +G ++ +G + + + L TP+ Sbjct: 60 IRFGAESFQIGAKISKNGQKTTLGVEYSVKGKFFLK-NGQKQKSFSSILGNLKGVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 + G P RR LD + +++L +NA L+QV + L W+ Sbjct: 119 EPVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIEAWNY 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQ--FLPEFSLTFSFQ-RGWEKETEYAEVLER 236 +L +I R + + + + Q FLP + S++ G + + + E+L++ Sbjct: 179 KLAEFGAEIIKEREKCLKILNDIINELNAQLRFLPG-KIEASYKTSGADDKEKIFELLKQ 237 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + ++ GPH+ DL +G ++ S+GQ K + +L+Q ++ + SG + Sbjct: 238 KYTEEKDKKQALFGPHRDDLNFYVNGRDLKIFGSQGQKKGALLLFKLSQAVYMAKVSGEK 297 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L+DD SE D E+R L QVF++A ID+ + + +F +E GK++ Sbjct: 298 PVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATEP---IDLKNYHQVVF-IENGKVS 353 >UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum reducens MI-1 RepID=RECF_DESRM Length = 371 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 169/371 (45%), Gaps = 20/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L +R+FRN + A P N + G N GKT++LEAIY G +FR+ + V Sbjct: 1 MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 E V++ + R + ++G K+ ++G + + +EL L + L PE Sbjct: 61 TNWESNHTVINTEVNLSSRLIKLQWKI-QEGSKKLSLNGVERPR-SEL-DLFGVVLFCPE 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV----TRYEQLRP 176 +L+ G P+ RR FLD+ PG+ W ++L QRN+ L+++ ++ E L Sbjct: 118 DLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQEVLEV 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTC-------KQFLPEFSLTFSFQRGWEKETE 229 WD++L ++ R + + T ++ ++ + + G E + Sbjct: 178 WDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLEPGL-SEGQ 236 Query: 230 YAEVLERN----FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 +V + + + + T GPH+ DL + +G + S+GQ + + +L+L+Q Sbjct: 237 IYQVFSSSSKKIRQMELKRCQTLLGPHRDDLSLAINGVEAKTFGSQGQQRTVTLSLKLSQ 296 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + E G + L+DD ELD R+ +L ++ + Q F++ + + Sbjct: 297 LDLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILN-KVQTFITTSFTGGIEETIKGAG 355 Query: 346 KMFTVEKGKIT 356 ++ V G +T Sbjct: 356 LLWQVNAGSLT 366 >UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUE9_9GAMM Length = 357 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 117/356 (32%), Positives = 186/356 (52%), Gaps = 4/356 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L I RN+ A ++L N L G NGSGKTSVLEAI+ L GR+FR+ VI Sbjct: 2 IKQLAIEGVRNL-DASVSLGSSANLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVIG 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ ++ + R +G+ + K G RI+G +A LA ++P+ ++ Sbjct: 61 FDRDHCLVTATVTEGNRNQQLGIQRSKDGSVIARINGEAVTSLAMLAEVLPVVVMDSGIV 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 +L++G P+ RR F+D FH E F AW +R L+QRNA LR+ T E W +E+ Sbjct: 121 SLIDGQPEGRRRFIDASVFHVEQSFLPAWRRFQRALRQRNAGLRRGT-LEGDEAWRREVA 179 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFERD 241 ++++ R+ + A + + + + F+ GW+K E LER+ E D Sbjct: 180 SAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALVFRAGWDKTVGLLEALERSLESD 239 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R +T GPH+AD+++ DG P + +SRGQLKL AL+LAQG + ++S +YL+ Sbjct: 240 RLQGFTHVGPHRADIKLLIDGRPAAEVMSRGQLKLAATALKLAQGGLIAQQSRSTPVYLV 299 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS-DENSKMFTVEKGKIT 356 DD +ELD + +L A QV +A+ + V +F VE+G + Sbjct: 300 DDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDRDEVPAFWSGSELTLFHVEQGSVV 355 >UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=Marinobacter RepID=RECF_MARAV Length = 373 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 133/373 (35%), Positives = 205/373 (54%), Gaps = 17/373 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L + FRN+ +A + SP FN L GANGSGKTSVLEAI LG GR+FR + V Sbjct: 1 MALVKLQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60 Query: 61 IRHEQEAFVLHGRLQG--------EERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHL 111 + H Q + G L E+ E IG+++D ++++R+DG ++ LA Sbjct: 61 VAHGQSKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMH 120 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 +P+ +I P F ++ GGP RR FLDW FH EP F + W ++R+ QRN LR Sbjct: 121 LPVSVIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLD 180 Query: 172 EQL-RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKET 228 E L R WD + LAE +S R + + L F GW++ T Sbjct: 181 ESLMRVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPGWDRST 240 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 EVL + E++R++ +T +GP++AD+R++ G PV +T SRGQ K L+ +++AQG+ Sbjct: 241 ALTEVLVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETFSRGQQKTLVILMKIAQGKV 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE----N 344 L+ G++ +L+DD +ELD R +LA L+ + QVF+++I + + Sbjct: 301 LSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTLWHDGDTPE 359 Query: 345 SKMFTVEKGKITD 357 +MF VE G++T+ Sbjct: 360 YRMFHVEHGQLTE 372 >UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=RECF_CYTH3 Length = 377 Score = 324 bits (830), Expect = 4e-87, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 10/364 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +F+N +L+ S G N G NGSGKT++L++IY L ++F S + Sbjct: 1 MYIEKISLLNFKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I Q F G Q +E I D +D K++E P ++TP Sbjct: 61 ITTGQGYFSALGWFQENAKEFKIQYDFD-GKKKSFTVDKKPYAKISEHIGRFPAIVLTPH 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ + RR F D + + A +KQRNA L+Q + Sbjct: 120 DTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDRILMD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +D L+ + I+ R EY + + P+ T ++ +V + Sbjct: 180 AYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEYETNVLSADFEQVFK 239 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ++ +D L T G HK D + + P++ S+GQ K + AL+LAQ E L +G Sbjct: 240 DSYSKDLILQRTNKGVHKDDFKFLINNEPIKHYGSQGQQKTFVIALKLAQYELLKACTGH 299 Query: 296 RCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEH---VIDMSDENSKMFTVE 351 + L+DD +LDD R L ++ Q+F+S + + ++ +MF ++ Sbjct: 300 NPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFISDARPDRSSIFFQSNTKDFRMFIID 359 Query: 352 KGKI 355 +GK+ Sbjct: 360 RGKV 363 >UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax=Xanthomonadaceae RepID=RECF_XANC5 Length = 368 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 172/363 (47%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL I R T +L S N L G NG+GKTSVLEA++ + +GR+FR + Sbjct: 1 MHVVRLSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 61 IRHEQEAFVLH-----GRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 I+ + G ER GL + + + R+DG D ++ L + + Sbjct: 61 IQQGANDLEVFVEWKEGNGAAGERTRRAGL-RHRGQEWTGRLDGEDVAQLGALCAALAVV 119 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR 175 P L++GG + RR FLDWG FH EP F T W R LKQRNA L+Q + L Sbjct: 120 TFEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQGAQPRMLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT-FSFQRGWEK-ETEYAEV 233 WD EL E +++ R Y + + P L+ +F GW++ E A+ Sbjct: 180 AWDHELAESGESLTSRRTRYLERLQERLVPVADAIAPALGLSALTFAPGWKRHEVSLADA 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L ERDRQ YT+ GPH+AD P D LSRGQ KL A LAQ E E Sbjct: 240 LLLARERDRQNGYTSQGPHRADWVPSFQALPGRDALSRGQAKLTALACLLAQAEDFAYER 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G + +DD SELD +G + RL + +QV ++A + + + F VE G Sbjct: 300 GEWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAGALLQQFHVEHG 359 Query: 354 KIT 356 IT Sbjct: 360 HIT 362 >UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RECF_PELCD Length = 363 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 157/362 (43%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+++ ++RNIE A+L FN L G N GKT+ LEAIY LGH ++FR + + Sbjct: 1 MILTRIILHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + G + + +T + I+G + E+ P L PE Sbjct: 61 IGSADRHTRVQGEFLRDGLRETVSITIT-GDKKNIEINGKRPRQSNEMFGRFPSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 +L G P RRA LD P F +R L+QRN L+ + PW +E Sbjct: 120 EVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVLPWTEE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETEYAEVLERNFE 239 LI + R Y + + D ++ S+ + + ++ E L N E Sbjct: 180 LIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRESVNLVYPSESDNLSDLKEELRSNLE 239 Query: 240 RDRQL----TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 R++ T GPH+ D D + S+GQ + + A + AQ L +E+G Sbjct: 240 REQSRETKYGMTMVGPHRDDPVFMVDDRVLGLYGSQGQQRSFILAFKTAQIIDLEKETGY 299 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L L+DD SELD +R+ L Q QVF++ + + + F V +GK+ Sbjct: 300 TPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQNAGFNRMRTFRVREGKL 359 Query: 356 TD 357 D Sbjct: 360 CD 361 >UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=Teredinibacter turnerae T7901 RepID=RECF_TERTT Length = 378 Score = 322 bits (827), Expect = 8e-87, Method: Composition-based stats. Identities = 131/362 (36%), Positives = 195/362 (53%), Gaps = 10/362 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L RL I +FRN+ +A L G N + G NGSGKTS+LE+I L HGR+FR+ + R+I Sbjct: 4 LRRLDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLIN 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++++F L G++ E IGL++ GD ++RID H ELA +P+ ++ F Sbjct: 64 NDEKSFTLFGQIF-EGTTRNIGLSRASNGDIQIRIDSKAAHTATELAECLPLLVMNSASF 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKEL 181 LL G + RR F DW FH + F W R +KQRN+ LR+ +L PWD+EL Sbjct: 123 QLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPWDQEL 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQF----LPEFSLTFSFQRGWEKETEYAEVLERN 237 A+ I + R+E + QF L+ ++ GW K Y E LE Sbjct: 183 TKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCTYVSGWSKTGNYNEQLEDQ 242 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD YT G HK+D++I P + LSRGQ K ++ AL LA+ +GR Sbjct: 243 FERDVAAGYTHIGSHKSDVKINLARVPAVEELSRGQQKSVIVALFLAEALVFRTTTGRTP 302 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS----DENSKMFTVEKG 353 ++L+DD +ELD++ ++ LK SQVF +AI + ++ DE+ +MF V+ G Sbjct: 303 VFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAIDPKSILTGWELVDDESLRMFHVKHG 362 Query: 354 KI 355 ++ Sbjct: 363 QV 364 >UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=Anaeromyxobacter RepID=RECF_ANASK Length = 372 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 103/370 (27%), Positives = 164/370 (44%), Gaps = 16/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++DFRN+ LA SP L+G NG GKT++LEAIY L + R++++ + Sbjct: 1 MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTD---GHKVAELAHLMPMQLI 117 +R + + G +G + + G + +DG G ++ + + Sbjct: 61 VRFGADQGAVAGDFEGPGGVRRVAVQVAAGGRT-ATLDGKALGSGARLDDYFEGLASVCF 119 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 +P+ L+ GP RR FLD F+ P R L+ RNAALR E + Sbjct: 120 SPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAG-PAEVEASF 178 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQF----LPEFSLTFSFQRGW-------EK 226 + L+ ++ R E A +A + + PE L + G E Sbjct: 179 REPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEAEV 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 A LE ERDR+ +T+ GPH DL + G S+GQ + L+ AL++A+ Sbjct: 239 AARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARLYGSQGQQRALVLALKIAEI 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E L GR L L+DD +SELD + L L A +Q F+++ + + ++ Sbjct: 299 ENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGPDTA 358 Query: 347 MFTVEKGKIT 356 F V G ++ Sbjct: 359 FFEVRSGVVS 368 >UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=Leptospira biflexa serovar Patoc RepID=RECF_LEPBA Length = 367 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 162/362 (44%), Gaps = 8/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ I++FRN E L F +G NG GKT++LE+I L + ++FR ++ Sbjct: 1 MFLKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQL 60 Query: 61 IRHEQEAFVLHGRLQGEERET--AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + + + E E G+ + K++++G + K+++ +++ Sbjct: 61 LRWDTSDTFIRAEFESEGNEYLFEYGIEHSQTKRKKLKVNGEEFKKISDYVGYFRSIVMS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPW 177 P ++ G RR FLD + +RL+KQRNAAL++ + ++ W Sbjct: 121 PPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREIGIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLER 236 D+ +I +I R + +A Q + +++ + E+ + L Sbjct: 181 DEPIIEHDSEIREIRTKTIQSLAGYFHQNLLQLSSGKDPYFLTYKPNITSKEEHKQKLID 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +D+ + YT+ G H+ L I D + S+GQ + + AL+ A + + +G Sbjct: 241 NLRKDKAIGYTSCGNHRDTLPIGFDDKDLSGFGSQGQKRSAVIALKTACFQMIRDTTGEA 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE---NSKMFTVEKG 353 + LIDD ELD +RR + + Q F + E + + + +++ ++ G Sbjct: 301 PVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTDLEGINEYVGNLTVDKEIYIIDSG 359 Query: 354 KI 355 K+ Sbjct: 360 KV 361 >UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH5_9FIRM Length = 363 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 170/364 (46%), Gaps = 11/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPG-FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M++ +L FRN ET + P +FL G N GKT+++EAIY L H R+FR+ Q+ Sbjct: 1 MNVEKLTCFHFRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDS 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I H F + ++ R+ + + D Q R K ++ + L P Sbjct: 61 MIMHGCNEFCVQAIVESNHRKEELKVIVDHQKKHLFRF-QNPVKKYSDFIGIENAILFCP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWD 178 + +L PK RR F+D + + S+ ++LLKQRN AL+Q E L + + Sbjct: 120 DDLSLFTSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLVQIYL 179 Query: 179 KELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRGWEKE--TEYAEV 233 ++I + I R E+ + A ++ E + + + + E Sbjct: 180 DQMIEVQSVIIKQRNEFLNSLMNKARELYPFFSNEKEEIGAKYMTFIPIDPDMKSHMKEA 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 ++ FE++++ T G H+ D+ + PV + S+GQ + + AL+L + + +S Sbjct: 240 YDKVFEKEKRYHQTLIGIHRDDILFELNENPVCEVASQGQKRSFVLALKLGLAQIIYEKS 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G+ + L+DD SELDD R+ L +L Q+F++ ++ + + + +EKG Sbjct: 300 GQYPILLLDDVFSELDDFRKRQLIEKL-PRDMQIFITTTERLNIN--WNREVRFYDIEKG 356 Query: 354 KITD 357 +I + Sbjct: 357 RIKE 360 >UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP63_9FIRM Length = 355 Score = 320 bits (821), Expect = 5e-86, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 152/342 (44%), Gaps = 10/342 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + RN E + + L G NG+GKT+++E+IY G++FR+ + Sbjct: 1 MRCGKTHLIEIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR +E + I + + K+ I+ T K EL + L TP+ Sbjct: 61 IRLNKEEGTILLDFSVRGVTHEIKIKLSRNKGKKILINETATKK-RELMGMFRTVLFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 L+ G P+ RR F+D P ++ R ++QRNAA ++ + + W Sbjct: 120 DLQLIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTADVDVW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWE-----KETEYA 231 D ++ A I R E I ++ E S+ +++ E Y Sbjct: 180 DMQIAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESILIKYRKSGNQEERFDEEWYL 239 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + E D + +T+ GPH+ DL +G + S+GQ + + +++LA+ EF+ + Sbjct: 240 EKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDISSYGSQGQQRTAILSVKLAELEFVKK 299 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 E+G L L+DD SELD ERR L S L + Q ++ Sbjct: 300 ETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTAD 341 >UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=bacterium Ellin514 RepID=B9XRI4_9BACT Length = 361 Score = 320 bits (820), Expect = 6e-86, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 10/360 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +RDFRN D+ +PGF L+G N GKT++LEAIY + R+FR + ++ Sbjct: 1 MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +RH Q+ + + G++ G+ + I + + K+ +D K+A+ + + + E Sbjct: 61 VRHGQKGYFVGGKVVGQG-DHEIKMYWSPA-ERKLSLDNQPIRKLADYFGAIRVVIFCTE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDK 179 L+ G + RR F+D P + L+ RNA L+Q + E L + Sbjct: 119 DLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALESFTA 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVLERNF 238 EL+ L + R E ++ ++ L +Q +K ++A L + Sbjct: 179 ELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRLEYQPSVKK--DFAVELAQTR 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 R+R T GPH+ ++++ + S GQ + L AL++AQ E+LT G + Sbjct: 237 ARERTYRSTLIGPHRDEVQLLLNDRSAAQFGSEGQKRTLAIALKMAQAEYLTGLHGSAPI 296 Query: 299 YLIDDFASELDDERRGLLASRLK---ATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LIDD ELD +RR L L+ T+ QVF++ E+ + + V G + Sbjct: 297 LLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTE-ENWPRELGRDLHRWEVRSGTL 355 >UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERQ3_AMOA5 Length = 370 Score = 320 bits (820), Expect = 7e-86, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 9/364 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L F+N ++ +L+ + N +VGANG+GKT++L+AI+ L ++ + + Sbjct: 1 MLLRKLRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + G ++ + D+ ++++G + E P+ L TP Sbjct: 61 ILHGGTQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIVLTTPY 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLR 175 L+ + RR F D +P + +++LK RN+ L+ + Sbjct: 121 DTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVDRALIN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +D +L+PL +Q+ R + + + F+ + + + + Sbjct: 181 SYDTQLLPLCKQLYAARKAFVDIFYPILQQQYEYFVDAPEIIEMGYESDADDPGFEQRFL 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 N + D T G H+ D + P++ S+GQ K + ALRLAQ + + G Sbjct: 241 DNIKEDLLAQRTILGIHRDDYVFMLNNYPIKKFGSQGQQKSFIIALRLAQFACIHQALGC 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLKAT-QSQVFVSAISAEH---VIDMSDENSKMFTVE 351 + L L+DD +LD++R L + QV+++ + ++ + +F +E Sbjct: 301 KPLLLLDDIFDKLDEQRIERLVYLMAQQYFGQVWITDAGGKRSASILKEIQADKALFKIE 360 Query: 352 KGKI 355 G + Sbjct: 361 GGTL 364 >UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD56_LEGLO Length = 356 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 194/358 (54%), Gaps = 13/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L I RNI +A L L+P FNF+ G+NGSGKTSVLEA Y L G +FR+ +I + Sbjct: 1 MILTELKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H Q + + R + +E I + K G ++V+++ ++LA+ +P Q+ + Sbjct: 61 ISHNQPSMTVFARGRNQE---TISIQKSYSGATQVKLNNQFCSTTSQLAYALPCQVFYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR LDWG FH + +F W KR+LKQRNA L++ + PWDK+ Sbjct: 118 LFQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYIPWDKQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET---EYAEVLERN 237 L LA Q+ R EY + + E T + +GW+K+ EVL N Sbjct: 178 LDQLANQLHLLREEYFIQWEREFISVLSEL-SELGCTLKYYKGWDKKNLGKSLEEVLAEN 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ D YT HG H+AD I D V+ +SRGQ K+++ AL+LAQ ++ + C Sbjct: 237 FDSDCHKLYTQHGAHQADFIIEVDNNKVKHFISRGQQKIILIALKLAQANLVSED----C 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI--DMSDENSKMFTVEKG 353 LYL+DD A+ELD+ + + S L Q +++ S +V+ + S+ S + + G Sbjct: 293 LYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVLFENFSNNFSSRYQINAG 350 >UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=Chlorobium limicola DSM 245 RepID=RECF_CHLL2 Length = 363 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 152/359 (42%), Gaps = 16/359 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + FRN + + G N L G NGSGKTSVLE I+ + F + Sbjct: 1 MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F+++GR + +E + + + K+ ++G D ++ +P +P Sbjct: 61 LAFGESFFLINGRFISDALKEDGVKVVYSRDNGKKLTVNGQDLTSFSQHIGSIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLR 175 +++NG P RR FLD + + + N +R+L QRNA L Q+ E L Sbjct: 121 AEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIEMLN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 ++L A I R + I + + +++ E Sbjct: 181 VLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEEPRITYRSSLVPSVYALTKEE 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + E + + + TA GPH+ D+ + ++ S+GQ + + A+++A Sbjct: 241 LINYFREQYAKKKQDEIARGLTAGGPHRDDIVFFLNQHEIKKYASQGQQRSFLIAMKMAL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + + + + + L DD SELD R +L + L + QVF++A H ++ N Sbjct: 301 YGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEKMHGPAVTTIN 358 >UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=Halorhodospira halophila SL1 RepID=A1WWD8_HALHL Length = 349 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 121/353 (34%), Positives = 183/353 (51%), Gaps = 8/353 (2%) Query: 4 TRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRH 63 RL + FRN+ L P N + G NG+GKTS+LEAIY L R+FR+ Q R+I Sbjct: 2 ERLEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFRTRQNDRLIGW 61 Query: 64 EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFT 123 E + ++G +R +G + G +++R++G D H + LA +P+QL+ E Sbjct: 62 GAEEARVVA-VRGHDR---LGAARTP-GHTRLRLNGADAHTRSALAARLPVQLMNTEHQR 116 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIP 183 LL GP+ RR FLDWG FH EP + + L+QRNAALR R + + W LI Sbjct: 117 LLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVGDRRSE-QAWTPVLIR 175 Query: 184 LAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQ 243 A + R + + ++ +Q+L SL + RG E + VL+ ERDR Sbjct: 176 CAAAVDVARQRFIEALRPIWSEFARQWLGLESLELRYYRGAAAELPWERVLDEQLERDRT 235 Query: 244 LTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDD 303 +T GPH+ADL + D P D LSRGQ KLL+ AL +A+ + +R+ G + LIDD Sbjct: 236 AGFTHRGPHRADLILSRDRIPAADALSRGQQKLLVVALLIAEVKLWSRQ-GLTPVLLIDD 294 Query: 304 FASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 +ELD + + +QVF++AI + + + V +G+++ Sbjct: 295 LPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPTDLPP-GQWYQVCEGRVS 346 >UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax=Actinomycetales RepID=RECF_CORJK Length = 425 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 160/406 (39%), Gaps = 56/406 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + ++R+ E DL LSPG G NG GKT+++EA+ L H + R + Sbjct: 1 MYVSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +E + RE L +G ++ I+ + +L ++ L +PE Sbjct: 61 VRRGEEIANISATAVNNGRELTAHLAIRARGSNRAHINRAAMNSQRDLLGVVRTTLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------------ 168 L+ G P+ RR FLD P ++ + L+QRNA LRQ Sbjct: 121 DLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLVVGAPK 180 Query: 169 ---------------TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE 213 + L WD +L L QI + R + +A + T + P+ Sbjct: 181 GASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQSLAPQ 240 Query: 214 F-SLTFSFQRGWE--------------------------KETEYAEVLERNFERDRQLTY 246 S+ + E + ++ + Sbjct: 241 SRPAHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQEVERGT 300 Query: 247 TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFAS 306 T GPH+ D+ + P + S G+ +LRLA F+ R G + ++DD + Sbjct: 301 TLLGPHRDDVNLILGHQPAKGYASHGESWSFALSLRLA-AFFMQRGDGVEPVVILDDVFA 359 Query: 307 ELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 ELD RR L + + + QV ++A E + + + +K++T+++ Sbjct: 360 ELDSSRRQHLVDLISSAE-QVLITAAVDEDIPEALRDVAKIYTIDE 404 >UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=Sphingobacterium spiritivorum RepID=C5PLJ5_9SPHI Length = 371 Score = 317 bits (814), Expect = 3e-85, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 166/367 (45%), Gaps = 10/367 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N + L P N G NG+GKT++L+AI+ L +++ + + Sbjct: 4 MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 63 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + F++ G + + R I + K + + + D ++A+ P+ +I+P Sbjct: 64 IKQGMDWFMVQGSFENDTRTDVISCSLKKNQKKQFKKNKKDYPRLADHIGQFPLVMISPN 123 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR----- 175 ++ G + RR F+D + + +++ QRN L+Q QL Sbjct: 124 DSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQARESGQLDLGLLE 183 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 + +L+ + QI R ++ + ++ ++L+ Sbjct: 184 VLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVYESPLMTIDFQDLLD 243 Query: 236 RNFERDRQLTYTAHGPHKADLRIRA-DGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 RN ERDR L T+ G HK DL +G P++ S+GQ K + AL+LAQ FL G Sbjct: 244 RNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALKLAQYSFLQSRKG 303 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEHVIDMSDENSK---MFTV 350 + L L+DD +LD+ R L + Q+F++ +E V + +E ++ +F + Sbjct: 304 FKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIFEEIAQPIRIFDI 363 Query: 351 EKGKITD 357 + G I D Sbjct: 364 KGGAIQD 370 >UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RECF_CHLT3 Length = 368 Score = 317 bits (812), Expect = 5e-85, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 144/359 (40%), Gaps = 17/359 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I FR+ + A G N + G NG+GKT++LEAI+ ++F S Sbjct: 1 MKLFKLSIHGFRSHQDAVFLPHDGINLIYGKNGTGKTNLLEAIHYTCLTKSFLSTSDSDA 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F L LQ + E E+ + + V I+ T +++ P ++P Sbjct: 61 LHFQAGHFELEAVLQSDSENESKVRVYYSPAEGKHVFINKTPLESFSKIVGEFPCVALSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLR 175 L G P+ RR FLD + + +R+L QRN L + +L Sbjct: 121 YDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSSPELD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-------EFSLTFSFQRGWEKET 228 W L LA I R + A + + F + S E Sbjct: 181 VWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLNENSFSEA 240 Query: 229 EYAEVLERNFER----DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E A+ + FE + + T GPH+ DL + + S+GQ K + L+LA Sbjct: 241 ELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLRKYASQGQHKTFVICLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEHVIDMSD 342 Q ++ + ++L+DD SELD +R L L + + Q F++ + ++ Sbjct: 301 QYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTERKDFAEVKQ 359 >UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RECF_HAHCH Length = 375 Score = 316 bits (811), Expect = 6e-85, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 200/371 (53%), Gaps = 15/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+R+ + RNI + L S G NGSGK+S+LE +Y LG G +FR+ ++ Sbjct: 1 MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLI 117 + H + V G E+ + IG+++ K G ++VRI+G ++ELA +P+ ++ Sbjct: 61 VSHLSDEMVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPILIV 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 TP+ F +NGGP RR F+DWG FH E F W N ++LL QRN L+ +L Sbjct: 121 TPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSELSA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----FSLTFSFQRGW-EKETEY 230 WD + + +++IS +R Y A + + ++ K+ + LT + GW + + + Sbjct: 181 WDNQYVAYSDEISRYRDAYFAELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDVNH 240 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + L + E D + +T GPH+AD++++ G ++ LSRGQ K L+ L L+Q E L Sbjct: 241 MDQLASSVESDVKKGFTTLGPHRADIKVKVGGVHAKEVLSRGQQKTLITHLYLSQLEILR 300 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD-----ENS 345 R + +R + LIDD +ELD + L +R+ +QVFV+ + + + ++ Sbjct: 301 RRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYLFGHFNQEYDT 360 Query: 346 KMFTVEKGKIT 356 +MF VE+G +T Sbjct: 361 QMFHVEQGAVT 371 >UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax=Chlamydiaceae RepID=RECF_CHLFF Length = 367 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 167/364 (45%), Gaps = 13/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L +++FRN + A ++LSP N++ G N GKT++LEA+Y L GR+FR+ + Sbjct: 1 MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I F L + + + + DK G K+ D + +++L ++P+ L + + Sbjct: 61 ISFGSAYFFLEMTCEKDGFSHKLSIYVDKHG-KKILSDQSPIKTLSQLIGMVPIVLFSSK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L++G P RR FL+ +P + S R L QRN+ L+ + L WD++ Sbjct: 120 DRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLK-TKQISTLSVWDEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----FSLTFSFQRGWEKE---TEYAE 232 L L ++ R + + L E F + Q KE E + Sbjct: 179 LATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELRK 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + RD +L T+ GPH+ D + + PV S GQ L+ LRLA+ ++ Sbjct: 239 QLTSSLHRDLELGSTSVGPHREDFTLMINDLPVSQFSSEGQKHSLLAILRLAECLYIKNI 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L+ +DD S LD+ R L L T Q +++ H +NS++F V + Sbjct: 299 HNVCPLFCMDDIHSGLDNHRISQLLD-LAPTLGQTLMTSTHLPH--QTLSKNSRIFLVNQ 355 Query: 353 GKIT 356 +++ Sbjct: 356 AQVS 359 >UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NAD5_9GAMM Length = 359 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 192/356 (53%), Gaps = 1/356 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L +L + + RN+ T L L P + G NGSGKT++LEAIY LG G++FR Q +I Sbjct: 3 RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H+Q L R++ E +G+ K + + ++R+DG + +A LA L P+Q++ + Sbjct: 63 AHDQPYLRLIARIEKNGEEHLLGIEKSAR-EHRLRLDGQNLKNLAALAALTPVQILNSDN 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 F ++ GP++RR +LD+G ++++P F AW LK RNAALRQ R L PW+ L Sbjct: 122 FAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWRAADLAPWNHIL 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 QI T R Y + + + + +QRGW A +L+ N ERD Sbjct: 182 GETGTQIDTLRRAYLEKLEDTLNTYHAELGGYERIHIHYQRGWPAGQPLAALLDANNERD 241 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 L +T G H+ADLR ADG + SRGQ K L+CAL LAQ +T +SG + LI Sbjct: 242 ALLKHTRDGIHRADLRYHADGRDIAHHYSRGQQKTLICALILAQTRLITADSGTAPIILI 301 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DD A+ELD R+ L L + SQ++++ I + + + + + +E G I + Sbjct: 302 DDIAAELDRARQEKLLQFLADSDSQLYITHIDGDLELPPALADHQRLHIEAGHIRE 357 >UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P205_ERYRH Length = 361 Score = 316 bits (810), Expect = 8e-85, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 158/363 (43%), Gaps = 10/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRNI +L+ + N VG NG GKT+++E++ L GR+FR + Sbjct: 1 MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++ E + ++ + + + G ++++ K+ E + L PE Sbjct: 61 IQYGNEFLSVIADIEDQNNTQNLKVVLSSAG-KYLQVNQQPLKKMTEFIGRCNVVLFNPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 + P+ RR +D+ + S +LL +RNA L+ + L + Sbjct: 120 DINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLEILTE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVL---- 234 +L+ + I RA++ + + + ++ E + E L Sbjct: 180 KLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLEGDLKEQLLSKM 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +F+RD T +G H+ D + PV + S+GQ ++L+ A +LA E + + Sbjct: 240 QDSFQRDCDFKVTQNGIHRDDFIFMINDIPVVNVSSQGQKRMLIIAFKLAIVELIFQSRK 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + +DD SELD+ RR + + L + QVF++ ++V S + +F V G Sbjct: 300 TYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVK--SKRDKSVFKVVSGN 356 Query: 355 ITD 357 + + Sbjct: 357 VEE 359 >UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXT0_ALIAD Length = 371 Score = 316 bits (810), Expect = 9e-85, Method: Composition-based stats. Identities = 103/371 (27%), Positives = 173/371 (46%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ + DFRN A++ LSPG N LVG NG GKT+ LEA+ + G++ R+ + + Sbjct: 1 MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR EQ+ + + + L +G + +G ++ E + + L PE Sbjct: 61 IRWEQDRARILLEASTRYGDRRLTLELGPEG-RRAFANGVQVGRMTEFVGQVQVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---RYEQLRPW 177 L+ G P+ RR FLD EP + S R L QRN L+ + L + Sbjct: 120 DLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDDDVLATF 179 Query: 178 DKELIPLAEQISTWRAE-------YSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY 230 D+++ + R Y+A I +D+A ++F + + S E Sbjct: 180 DRQIAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVEEGMSVEEM 239 Query: 231 AE----VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 A+ LE+N +D + T+ GPH+ D+ + DG V S+GQ + + +LRLA+ Sbjct: 240 ADTVQRALEKNRAQDLRFGTTSAGPHRDDILLFLDGREVHTAASQGQQRTIALSLRLAEI 299 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 +F+ E G + L+DD SELDD R+ L + + + Q ++ S + ++ + Sbjct: 300 DFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGM-SRKVQTVITTTSLNRL-GQELDDFR 357 Query: 347 MFTVEKGKITD 357 +F V G I + Sbjct: 358 LFRVCSGIIAE 368 >UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=RECF_DESAP Length = 360 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 103/367 (28%), Positives = 160/367 (43%), Gaps = 19/367 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + D+ + G N + G N GKT+ +EA++ G +FRSL+ + Sbjct: 1 MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + QE+ + L+G++ T + + G V G K AELA + L TP+ Sbjct: 61 VTWGQESAFVEAELEGKDGRTRVRAELNPAGKKIVW-AGEPVGK-AELAVRLGTVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV---TRYEQLRPW 177 +L+ GGP+ RR FLD PG+ TA +R L+QRN LR E L W Sbjct: 119 DLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSELLDLW 178 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKET------EY 230 E+ + + R E A + E ++ + G + Sbjct: 179 TDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGEELAVRYRSSVGLSNGVRTPGAGDL 238 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E L + + + T GPH DL +G S+GQ + ++ AL+LAQ Sbjct: 239 RETLAAVRQDEIRAGQTQAGPHLDDLAFMVNGKEGRPFASQGQQRSVVLALKLAQVFLWK 298 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 R +G + L+DD E D ERR + L+ QVF++ + S++F V Sbjct: 299 RHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITT------GERVLSGSRVFCV 351 Query: 351 EKGKITD 357 G I + Sbjct: 352 HSGNIQE 358 >UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=Colwellia psychrerythraea 34H RepID=RECF_COLP3 Length = 377 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 18/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS+ RL +FRN+ + + L P NF +G NGSGK+S+LEA++ LGHG++FR+ ++ + Sbjct: 1 MSVARLTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFRTSKVEHL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD-KQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +E + FV+ + + + +GL+K+ + G + ++I+G +++ELA + +Q++TP Sbjct: 61 ACYETDNFVVSIK---DVNDLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQIVTP 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 E F L GGPK RR F++ G FH + W R+LKQRNA +R W Sbjct: 118 ESFKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRHNLDKATFDYWTG 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKETEYAEVLERN 237 L+EQ++ R++Y + +++ + LP +T + +GW ++ + L + Sbjct: 178 LFCQLSEQVAEVRSQYITNLISELPYWLEILLPNIADKVTVQYLQGWPQKKNLMDSLNDS 237 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ER++ Y+ +G HK D++ +E LSRGQ KL + AL AQ + + R + + Sbjct: 238 HEREQAFGYSIYGAHKFDVKFLIAKQALESQLSRGQQKLFLLALTFAQAKLIARVNRVKP 297 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE------------NS 345 + LIDD +ELD R L+ L QV ++AI + D+ Sbjct: 298 ILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVLQPFIDDVSVADKESSKKTKY 357 Query: 346 KMFTVEKGKI 355 MF V+ G I Sbjct: 358 HMFHVKHGGI 367 >UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACS5_ALHEH Length = 354 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 126/351 (35%), Positives = 193/351 (54%), Gaps = 7/351 (1%) Query: 5 RLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE 64 L RN++ +L G N +VGAN +GKTS+LEAIY + R+FR+ + ++I + Sbjct: 2 SLAAEGVRNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNG 61 Query: 65 QEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTL 124 EA + + QG IG+ +D Q +++VR+DG DG ++ELA +P+Q+I E L Sbjct: 62 HEALWVRAQTQGH----TIGVARDSQ-ETQVRLDGRDGRSLSELARYLPVQVINSEHQRL 116 Query: 125 LNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPL 184 L GP RR+FL+W FH EP F T W R L+QRNAAL+ +D+ LI Sbjct: 117 LLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAG-ESRLAWAYDEGLIET 175 Query: 185 AEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQL 244 A+ I R + + +++LP+ + ++ GW + A+ LE E DRQ Sbjct: 176 ADTIDRNRRHLIDALEPRWSALVRRWLPDEPVALHYRPGWRSDEPLADRLEAQRELDRQR 235 Query: 245 TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDF 304 +T GPH+ADL R G + LSRGQ KLL+ AL LAQ +G+ L+DD Sbjct: 236 GFTNSGPHRADLSFRVAGVEAQHRLSRGQQKLLVLALLLAQAAVTHTLTGQSLTLLVDDL 295 Query: 305 ASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 A+ELD RR + + ++ +Q F++AI + ++ + ++ F VE+G+I Sbjct: 296 AAELDPARRAAVVEAIASSGNQAFLTAIEPGDIP-LAPDAAQWFHVEQGRI 345 >UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=Tropheryma whipplei RepID=RECF_TROW8 Length = 363 Score = 313 bits (803), Expect = 5e-84, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 160/360 (44%), Gaps = 16/360 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++ + +R+FRN E ++ + G N + G NG GKT++ EAIY L + R+ + +I+ Sbjct: 6 ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIK 65 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 ++ + ++Q + + + ++ +++DG K+ +L + + +PE Sbjct: 66 SGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKP-SKLRDLVSVFSCVIFSPEDI 124 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLRPWD 178 L+ G P +RR +LD P +S R LKQRN+ L+ + + L W Sbjct: 125 DLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWT 184 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 ++L+ L +I R + +++ + ++ + + + + + Sbjct: 185 QKLVELGLEIVNARKRLLKILNPKISEFYSKLA---GVSSTAELFCQSSDCLIDTFDLLR 241 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES---GR 295 +R+ + T GPH+ ++ I + P S+G+ L +++L+ E + Sbjct: 242 DREIEEGVTLAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYDP 301 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + ++DD + LD R+ LA + + + Q V+ + S+ VE+GK+ Sbjct: 302 DPVVILDDVFAHLDSYRKQKLAQEVFSYE-QTIVTTTDNSD----NYRTSQTLVVEEGKV 356 >UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FBE Length = 382 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 23/376 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T I F+N++ A P +N +VGAN GKT++LEA++ L ++FR + Sbjct: 1 MIVTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD--SKVRIDGTDGHKVAELAHLMPMQLIT 118 I + + ++Q RE I K G+ + ++G L + Sbjct: 61 ICLDGQRMSSAVKVQDSVREQKITFEMAKGGNSPKLIHLNGVKQRGTRALFDVFKCIAFI 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQL 174 P+ ++ G P+ RR+F+D P F + ++ QRNA L+++++ + L Sbjct: 121 PDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASADVL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAA---DMADTCKQFLPEFSLTFSFQ---------- 221 WD++ IS R EY + I + +T E SL + Sbjct: 181 EIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFEKP 240 Query: 222 RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 G E E Y L E D + T G ++ ++ I+ +G D S+GQ+K + Sbjct: 241 IGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIKINGVSARDFGSQGQIKSAALVM 300 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LAQ E ++S + +DD ELD+ R+ + ++ QVFV+ + ++ Sbjct: 301 KLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIR--DMQVFVTTPNESALLP-- 356 Query: 342 DENSKMFTVEKGKITD 357 + K+ + G+IT+ Sbjct: 357 EIKGKILRISGGRITE 372 >UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI8_9FIRM Length = 366 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 158/363 (43%), Gaps = 12/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT+L + D+RN E + L G + L G N GKT+VLEAI L R+ R+ + Sbjct: 1 MRLTKLRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ +EAF + ++ R+ + ++ +++G + + + KV++ + P+ Sbjct: 61 IKEGKEAFFIKAEIEKTNRKEELQISVNERGKN-LFMYKNPVSKVSDFIGEFNAVMFCPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDK 179 L N P+ RR F+D + ++LLK+RN L+Q E L Sbjct: 120 DMMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLDVVTM 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQ---RGWEKETEYAEVL- 234 +LI + R + + A K+ + ++ E E + L Sbjct: 180 QLIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLRDRLT 239 Query: 235 ---ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E++ ERD + T+ G HK D + +G V S+GQ + ++ AL++ + Sbjct: 240 EKYEKSRERDLAMRVTSVGIHKEDFIFQINGREVATYASQGQKRSILLALKVGMIYMIED 299 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM-SDENSKMFTV 350 + L+DD SELD +RR L L + Q+F+S E + + ++++ Sbjct: 300 IIHDYPVLLLDDVFSELDMDRRKELLHSL-PNEVQIFISTTDIEEFKHLDIHQPITIWSI 358 Query: 351 EKG 353 G Sbjct: 359 ASG 361 >UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9C6_9FIRM Length = 366 Score = 312 bits (801), Expect = 8e-84, Method: Composition-based stats. Identities = 80/367 (21%), Positives = 160/367 (43%), Gaps = 17/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +FRNIE + + + +N G N GKT+ LEA+ +G + R Sbjct: 1 MYIENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNF 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++ ++ ++ ++ E+ + + + K I+ + EL + + TPE Sbjct: 61 IKNGEDFSLISAKVIKED-DIDTFIKCVIKDKRKYEINSSPIKSRTELLREYNLVMFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLRP 176 ++ G P RR FL+ H P + +A + LKQRNA LR ++ L Sbjct: 120 DLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASSLLEV 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW--------EKET 228 +D+ L + I R I + K+ + + F + + ++ Sbjct: 180 YDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAKDLKDIKS 239 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Y + L+ + D T G H D+ I + + S+GQ + + ++L+ + Sbjct: 240 LYKKALKNSRNDDLMKGSTTIGVHHDDINIFLNDLDTKKFASQGQQRSISLCMKLSLIKL 299 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 L + + L+DD S+LD R+ + + +K +Q F++ ++ + D+ ++ K++ Sbjct: 300 LHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIK--DTQSFITCVNYSFLEDI--DDYKIY 355 Query: 349 TVEKGKI 355 +EKG + Sbjct: 356 KIEKGNL 362 >UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG1_9FIRM Length = 377 Score = 312 bits (801), Expect = 9e-84, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 157/383 (40%), Gaps = 33/383 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL +++FRNI + N L G N GKT++ EAI +FR+ + Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGP-SFRTSRQSSY 59 Query: 61 IRHE----QEAFVLHGRLQ---GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 I +E V+ + E I T +++ +G EL ++ Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDSENLIEFTI-CNNKKEIKYNGLAIKSALELYGVLK 118 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-------R 166 + PE L+ G P+ RR +LD P S + LK +N L Sbjct: 119 YVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGINFGDD 178 Query: 167 QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK 226 Q+ W+ L ++ R +Y + + + + L + Sbjct: 179 LSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGEELKLKYYSSIFD 238 Query: 227 ETE------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 TE Y E L +F+R+ ++ YT G H+ D+ + D V++ S+GQ Sbjct: 239 STELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNLYIDNNDVKEFGSQGQQ 298 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + AL+LA+ E + ++ + ++DD SELD R+ + + + SQVF++ + Sbjct: 299 RSTALALKLAEAEIIRQK-DETPIMILDDVLSELDAGRQRFVLNHI--INSQVFITCCNI 355 Query: 335 EHVIDMSDENSKMFTVEKGKITD 357 V ++ +N K++ VE G T+ Sbjct: 356 NDVKEL--KNGKVWKVENGIFTE 376 >UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax=Actinomycetales RepID=RECF_RHOOB Length = 410 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 95/402 (23%), Positives = 158/402 (39%), Gaps = 50/402 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +RDFR+ + L L PG VG NG GKT+VLEA+ L + R + Sbjct: 1 MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + RE + L ++ ++ RI+ + + E+ ++ L PE Sbjct: 61 IRTGTAQAFAGATVVNTGRELTVDLELNEGKSNRARINQSPTRRPREILGILQTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------------- 167 +L+ G P RR +LD P ++ +R+L+QR+A L+ Sbjct: 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSRGGG 180 Query: 168 ------VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTF 218 + L WD L Q+ R +A +A++ + PE S+ + Sbjct: 181 RPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASIRY 240 Query: 219 SFQRGWE-------------------KETEYAEVLERNFERDRQLTYTAHGPHKADLRIR 259 G E + + L ++ + GPH+ DL + Sbjct: 241 RSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLELH 300 Query: 260 ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASR 319 P + S G+ +LRLA L G + ++DD +ELD +RR LA Sbjct: 301 LGDTPAKGFASHGESWSFALSLRLAGFALLR-ADGSDPVLMLDDVFAELDRKRRRALAKV 359 Query: 320 LKATQSQVFVSAISAEHVIDMSDENSKMFTVE-----KGKIT 356 + QV ++A E V + ++ F VE +G+I+ Sbjct: 360 ALDAE-QVLITAAVPEDVPEEL--DAVRFGVEARDTDRGRIS 398 >UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax=Acinetobacter RepID=RECF_ACIB3 Length = 360 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 10/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL I RN++T L FN GANGSGKTS+LEAI+ L GR+FR+ Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++E + ++ + E IG+ K G+ ++++G +LA L+P+Q I P+ Sbjct: 61 IQYEADDAIVFAQSATE----KIGMQKLASGEQLMKVNGDTVATQGQLAKLLPLQHIDPQ 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPWD 178 +++ G K RR LDW FH EP F+ AW R LKQRN L+ + L PW+ Sbjct: 117 STDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEPWN 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 K L E + + R + Q LP+ + + G+ E + L Sbjct: 177 KMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQH 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ++D + YT +GPH+ADLR++ +D LSRGQ KLL+ AL+L+Q L + + Sbjct: 237 QKDIERRYTEYGPHRADLRLKTPFGHADDVLSRGQKKLLIIALKLSQIAMLHASNKET-V 295 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE---NSKMFTVEKGKI 355 L+DD +ELD + L RL SQVF++ + V + + ++F+VE G++ Sbjct: 296 VLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLSISYQLFSVESGQV 355 Query: 356 T 356 + Sbjct: 356 S 356 >UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=Congregibacter litoralis KT71 RepID=A4A954_9GAMM Length = 352 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 122/336 (36%), Positives = 183/336 (54%), Gaps = 7/336 (2%) Query: 26 NFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGE-ERETAIG 84 N + G NGSGKTS+LEA + LG R+FRS +I H +E++V+ G + AIG Sbjct: 5 NVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSMAIG 64 Query: 85 LTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNE 144 + ++K G +R+ G V+ LA +P+ LI + F LL G P RR FLDWG FH E Sbjct: 65 VQREKAGAISLRLAGEPSRSVSRLADELPLLLINSDSFDLLVGEPANRRRFLDWGVFHVE 124 Query: 145 PGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADM 203 + +R L QRN LR+ +L+ W ++L AE++S+ R + + Sbjct: 125 HELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFLESLREVF 184 Query: 204 ADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADG 262 + PE + ++RGW+ + Y EVL+R+ D++ +T GP +AD+R+ G Sbjct: 185 EPLIAELAPEIGPVALVYRRGWDASSSYEEVLQRSLTSDQEQGFTQTGPQRADIRVTVGG 244 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA 322 +TLSRGQ KLL+CAL+LAQG+ L E G LYLIDD SELD ER + L A Sbjct: 245 YSAAETLSRGQQKLLVCALKLAQGQILASEQG-NVLYLIDDLPSELDAERCERVCRTLAA 303 Query: 323 TQSQVFVSAISAEHVIDMS---DENSKMFTVEKGKI 355 Q Q ++ ++ + + + MF V++G++ Sbjct: 304 MQVQTLITCVTRSAIPASWLGSESDVAMFHVKQGQV 339 >UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVG9_9SPHI Length = 366 Score = 311 bits (797), Expect = 3e-83, Method: Composition-based stats. Identities = 93/365 (25%), Positives = 160/365 (43%), Gaps = 11/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F+N E L SP N +VG NGSGKT++L+ I+ L ++ Sbjct: 1 MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDSLN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + H+++ F + G + E + + T + ++ +G K +E L+P+ LI P+ Sbjct: 61 VLHDKDFFAIKGHFEIESKPLEVRCTVELGKKKQIFQNGKALDKTSEHVGLLPLVLIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-----QLR 175 L+ GG RR F D + + LKQRNA L++ L Sbjct: 121 DTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGRRDLTLLG 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVL 234 +D+E+I L++ I+T RAE +A + + +T ++ +E +++ Sbjct: 181 SYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVYETEALRE-DFSNYF 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 ++D + G HK D P+ S+GQ K + +L+LAQ + G Sbjct: 240 SSLRKKDFITKNSNAGIHKDDYSFLIGDHPIRKIGSQGQQKSFIISLKLAQFQIFENAKG 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEH---VIDMSDENSKMFTV 350 + L L+DD +LDD R + + T Q+F++ E ++ D F + Sbjct: 300 EKPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLTDARPERSQKILSQLDSEVFFFEL 359 Query: 351 EKGKI 355 EKG + Sbjct: 360 EKGNV 364 >UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS07_9BACT Length = 351 Score = 311 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 159/352 (45%), Gaps = 11/352 (3%) Query: 5 RLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE 64 L ++ FR+ + + LSP + G NGSGKT++LEA+Y L G +FR+ + + Sbjct: 4 SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFRAS-DQELGQIG 62 Query: 65 QEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTL 124 + + L RL E + + + G +DG ++ H +P+ L P L Sbjct: 63 MDWWRLDARLVANESRSILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPGDLRL 121 Query: 125 LNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDKELIP 183 L+G P RR F+D EP + S R+LKQRN L+ + + ++L WD L Sbjct: 122 LHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVALSE 181 Query: 184 LAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEK-ETEYAEVLERNFE 239 +I R +YSA + A + + + SL +SFQ G E + L + Sbjct: 182 YGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYSFQEGAESVQQAMVSALHAHHV 241 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+ L YT GPH+ DL + SRG+ + ++ AL+ + E L + L Sbjct: 242 RDKALGYTTVGPHRHDLIFSMNDVEATSIASRGETRSIVLALKFIEVEMLRVYRDQPPLL 301 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 L+DD SELD RR L + +Q ++ +A+ K V+ Sbjct: 302 LLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADIQKTFGGAPVK--HVK 349 >UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=RECF_PARUW Length = 359 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 13/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L L ++ FRN E A L SP FN + G N GKT++LEAI+ L GR+FR+ + Sbjct: 1 MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + E+F L + E + D K+ + T ++ L L+P +ITP+ Sbjct: 61 IQQQFESFFLEAQFYKHGIEQTLKFGFH-TTDRKIIYNSTPLATLSNLLGLIPGVIITPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ G P+ RR FLD +P + + R LKQRN L+ + + W++E Sbjct: 120 DVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQIS-IDSWEQE 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGW-------EKETEYAE 232 + A + R + + E LT ++ E + + Sbjct: 179 MTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVK 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L +N +R+ Q+ YT GPHK DL + G + S GQ + + AL A+ L + Sbjct: 239 QLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQR 298 Query: 293 -SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 G L++IDD LD R+ L +L++ QVF++ + +D D + K+FT Sbjct: 299 GDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPK-FLDHIDADKKIFT 354 >UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXQ7_DYAFD Length = 365 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 151/361 (41%), Gaps = 9/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + F++ E N +VG NGSGKT++L+AIY L ++ Q Sbjct: 1 MWLEKLRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLTLTKSAFHNQDALG 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IRH + F+L G + I + + D ++++ L P+ LI P+ Sbjct: 61 IRHINDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADKKHYDRLSDHIGLFPVVLIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQLR 175 L+ G + RR F D PG+ T + ++L QRN L+ + L Sbjct: 121 DTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLDEDLLE 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +++ LI L+++I RA + + ++ Sbjct: 181 TYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVIYESEVVSPDFPAEFR 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 RN RD T G HK + DG ++ S+GQ K + AL+LAQ E L E G+ Sbjct: 241 RNRSRDLHAQRTGKGIHKDEYVFEIDGVTLKKFGSQGQQKSFLIALKLAQFELLKEEKGK 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLK-ATQSQVFVSAISAE---HVIDMSDENSKMFTVE 351 + L+DD +LDD R L + +QVF++ E +++ + + F +E Sbjct: 301 TPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFITDARPERSQRILEHVKADVRFFEIE 360 Query: 352 K 352 K Sbjct: 361 K 361 >UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI3_CALS8 Length = 349 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 11/339 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FRN G N ++G N SGKT++LEAIY G++F+S + + Sbjct: 1 MIIKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFKS-KDTNL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E F L + + E I D+ G ++ I+ ++++EL P+ Sbjct: 60 ISFDSEYFKLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFVYFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P + + ++ L RNA L+ + + + +D E Sbjct: 120 STELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFLKSYDKKDIIDVYDIE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLERN 237 L L QI R E ++ + + + + F E EY L++ Sbjct: 180 LSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSIPSSSEEEYYSQLKKQ 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FE+D Q+ +T G H+ D + +G ++ S GQ+K A+ LA + + Sbjct: 240 FEKDVQMGFTTKGVHRDDFDVFINGQNAKEYASEGQIKFACIAISLASAKLF-----EKP 294 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + L+DD SELD E+R + K Q +++ + Sbjct: 295 VLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADEKD 331 >UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUX6_CHIPD Length = 360 Score = 310 bits (795), Expect = 5e-83, Method: Composition-based stats. Identities = 85/355 (23%), Positives = 163/355 (45%), Gaps = 9/355 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 SL ++ + F+N + + G NGSGKT++L+AIY + +++ + + Sbjct: 3 SLKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQNT 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 +++ F L G + + +E I T K G + ++ + ++ P +I P+ Sbjct: 63 QYQTNGFRLEGFMDRDHQEGKIVCTL-KDGKKEFALNDEAYERFSQHIGRYPAVMIAPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQLRP 176 ++ GG + RR +LD PG+ +++L+Q+N L+ ++ L Sbjct: 122 AEIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQDTLLDI 181 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEVLE 235 +D++L+ + WR + G + + ++ +Q G ++T + E+L Sbjct: 182 FDEQLVKHGTPVFEWRRAFLPGFIQQVQKLYDYLAGKHETVNIQYQSGLHEQT-FTELLA 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 N +D + T G HK DL+ D P++ + S+GQ K + AL+LAQ E + Sbjct: 241 ANRYKDMMMQRTTGGIHKDDLQFVLDDHPMKTSASQGQRKSFLFALKLAQFEVIKEHKKF 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEHVIDMSDENSKMFT 349 L L+DD +LD +R L + + + QVF++ A+ ++ ENS F Sbjct: 301 PPLLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDTHADRILAAFKENSDNFQ 355 >UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MZ06_9BACT Length = 362 Score = 309 bits (793), Expect = 8e-83, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 178/361 (49%), Gaps = 5/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+NI +L PG N VG NG+GKT+V++A+Y L ++ ++ G+ Sbjct: 1 MYLKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQN 60 Query: 61 IRHEQEAFVLHGR-LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +RH + F+L G+ L E R ++ ++G ++ +G + ++++ L+P+ +++P Sbjct: 61 MRHGSDFFLLDGQYLTDEGRSESVVCAFARKGGKTLKRNGKEYERLSDHVGLIPVVIVSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L++ RR +L+ + + A +L +RN L+ + L +D+ Sbjct: 121 ADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLKISRDEQMLCIYDR 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L+ I R+E +A + ++A + + R +T + E+L ++ E Sbjct: 181 QLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLEYRSELNDTPFEELLLKSRE 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D +T G H+ DL + G P+ S+GQ K + AL+LAQ + + G + + Sbjct: 241 KDFVNGFTTAGIHRDDLVLHIGGYPLRKYGSQGQQKSFLIALKLAQYALVAQAKGEKPIL 300 Query: 300 LIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEH---VIDMSDENSKMFTVEKGKI 355 L+DD +LD R L + Q+F++ + ++D + ++ +FTVE G I Sbjct: 301 LLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKTGDDYSLFTVENGGI 360 Query: 356 T 356 Sbjct: 361 V 361 >UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT5_ACIFE Length = 378 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 160/380 (42%), Gaps = 27/380 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN E + L G N GKT++LE I+T G +FR+ + Sbjct: 1 MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDK---QGDSKVRIDGTDGHKVAELAHLMPMQLI 117 E + + + + + + + + + ++G E L+ + L Sbjct: 61 PSFGAEEWAAELQYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPV-TPREQYGLVNLVLF 119 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-- 175 TP+ L+ G P RR FLD P ++ + R+L+QRN L+Q E+L Sbjct: 120 TPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKLEEA 179 Query: 176 ---PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKET- 228 WD L LA I R + +GI +L++ +RG +ET Sbjct: 180 QLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRGDGEETV 239 Query: 229 -----------EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 Y E L D YT+ GPH+ DL I +G P+ S+GQ + Sbjct: 240 RENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLRAYGSQGQQRTA 299 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 AL+L++ EF+ + L+DD SELD RR L + T Q F++ ++ H+ Sbjct: 300 ALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-VQTFLT-VNDRHL 357 Query: 338 IDMSDENSKMFTVEKGKITD 357 + + + + V +G++ + Sbjct: 358 APVDGDVAA-YRVREGRLEE 376 >UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BCH3_CHLPD Length = 365 Score = 307 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 80/351 (22%), Positives = 146/351 (41%), Gaps = 16/351 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + G L G+NGSGKT++LE I+ + F S+ Sbjct: 1 MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I + + L GE + + ++ ++ + ++ + K + +P +P Sbjct: 61 IFDSSDYYALQSTCLGENGSDIEVRISFSREKGKTLFVNNNEIKKFSNHVGTIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLR 175 ++++G P RR F+D ++ + +R+L QRNA L Q++ L Sbjct: 121 PEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALLAQISEKKSSINMLP 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 W + L LA I R E+ + D K+ ++ E Sbjct: 181 YWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGRYDNIRNIDE 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 Y + N + + T+ GPH+ DL + ++ S+GQL+ + L+LA Sbjct: 241 LAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIKKYASQGQLRTFLIGLKLAV 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++L + + + L+DD SELD +R + S L+ Q +++ Sbjct: 301 YDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLG-QSIITSTVRRD 350 >UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=Actinomycetales RepID=RECF_RENSM Length = 398 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 159/381 (41%), Gaps = 44/381 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + DFR+ + ADL L PG N +G+NG GKT+++EA+ L + R Q G + Sbjct: 1 MYLEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E ++ G L + + + + ++ RI+ + + E+ L L PE Sbjct: 61 IRFGAEQALIRGNLVRGTQRLGLEVEINASRANRARINRANPVRAREILGLCRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--------- 171 +L+ G P RR FLD P F ++ +R+LKQRNA L+ + Sbjct: 121 DLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQAPSA 180 Query: 172 ---EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP---EFSLTFS-----F 220 + WD+ A Q+ + R + + +M+ ++ E S + + Sbjct: 181 DFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSSLDGY 240 Query: 221 QRGWEKETE--------------------YAEVLERNFERDRQLTYTAHGPHKADLRIRA 260 Q + E Y L +R+ + T GPH+ ++ + Sbjct: 241 QEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEVELGL 300 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLT---RESGRRCLYLIDDFASELDDERRGLLA 317 AP S G+ + ALRLA L G + ++DD +ELD RR LA Sbjct: 301 GQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSRRSKLA 360 Query: 318 SRLKATQSQVFVSAISAEHVI 338 + + QV V+A + V Sbjct: 361 HMVAGAE-QVLVTAAVDDDVP 380 >UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK7_9FIRM Length = 358 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 71/359 (19%), Positives = 152/359 (42%), Gaps = 12/359 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+ + + +FRN ++ L P N + G N SGKT++LEAIY +F++ + + Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + + G + + + + K I+ + + + L +P Sbjct: 61 INFSKNEACILGTYENNCYKDNYRIEITRNNIKKYFINEQKTNS-KDFRQARHIVLFSPV 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ P RR F+D + + + S +++L +RN L+ L +D+E Sbjct: 120 DLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISKNMSLLEIYDRE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-------QRGWEKETEYAEV 233 L + +I R + + L ++ E + Sbjct: 180 LSKIGSKIIIMRLIAIKELNKYANKHYQNLSKNDRLKTTYLSTIPLSSNEEEIRENFYNF 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L+ N +D Q T+ GPH+ D+ + + + S+G+ + ++ +L+L++ + + ++ Sbjct: 240 LKLNQYKDFQRKNTSIGPHRDDIDFKINDKSTKAFGSQGEQRSVVLSLKLSEFDLIYKKF 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + + L+DD SELD++R L +K +Q F++ + + +S + +E Sbjct: 300 NDKSILLLDDVFSELDEKRTLYLLDSIK--DTQTFITTTEFKDYFKNLNISS--YNIED 354 >UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FBAB Length = 374 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 161/367 (43%), Gaps = 25/367 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL +R++R+ DL PG V NG+GKT+++EAI L H R+ R + Sbjct: 1 MWISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + ++R + ++ +G ++ R++ + K+ E+ L+ + PE Sbjct: 61 VNESAQTATVSALVNRDQRHATVEVSIQSKGANRARVNRSPV-KMKEILGLVSCVVFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQL 174 +L+ G P RR+++D P + + ++ +R LKQRNA L+++ L Sbjct: 120 DLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDRDPGLEATL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----------FSLTFSF--- 220 W+ A ++ R A I + + + + Sbjct: 180 DIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQARYDSRIDYSQA 239 Query: 221 QRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 + E LER + + T HGP + DL + P + S G+ L A Sbjct: 240 ESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAKGYASHGETWSLALA 299 Query: 281 LRLAQGEFLTRESG---RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 ++LA + L+ ++G + + ++DD +ELD RR LASR+ + QVF++A + Sbjct: 300 MQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITEAE-QVFITAAVDGDL 358 Query: 338 IDMSDEN 344 + + Sbjct: 359 PEGLEGR 365 >UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS9_SEBTE Length = 362 Score = 306 bits (784), Expect = 8e-82, Method: Composition-based stats. Identities = 78/366 (21%), Positives = 169/366 (46%), Gaps = 19/366 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +FR +E + P FN + G NG GKTS++EA+Y L G++FR+ ++ + Sbjct: 1 MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +++ +++G + + I + + + +D + K + ++ + PE Sbjct: 61 TSYDKIRTIVYGSFESKLSGKTIAIDFNND-KKEYYVD-KNKTKYIDYVGILNVISFIPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 ++ G P RR F ++ + + + +++LK RN +++ ++L +++ Sbjct: 119 DIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKELYHIYNE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQR---------GWEKETE 229 + I +I R EY I+ + ++ S L + E + + Sbjct: 179 KFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMTLEEIKEK 238 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + E + +R+++ YT GP K D +G + S+G+ K ++ +L++A+ + L Sbjct: 239 FREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAKAFSSQGEKKSIIFSLKIAEIDML 298 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E ++LIDD +S D+ R+ + + K Q F+++ + K Sbjct: 299 IKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEKLDI------EGKKIY 352 Query: 350 VEKGKI 355 ++KG+I Sbjct: 353 IDKGRI 358 >UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=Rhizobiales RepID=C3MBZ9_RHISN Length = 470 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 152/369 (41%), Gaps = 14/369 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 SLTRL + DFRN L L L G NG+GKT+++EAI L GR R V Sbjct: 103 SLTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAAYADVA 162 Query: 62 RHEQ-EAFVLHGRLQGEERETAIGLT---KDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 R + F + ++G + IG ++ ++R++GT V EL + + + Sbjct: 163 RVGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHLRVLWL 222 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRP 176 TP L G RR FLD +P S R ++ RN L + L Sbjct: 223 TPAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDPAWLTA 282 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF-------SFQRGWEKETE 229 ++E+ L ++ R E + A + + P L+ ++ E Sbjct: 283 IEREMAGLGVSMALARLEMLGLLTALVERSQGGSFPSAGLSLAGFLDDCHGLPAYDLEER 342 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEF 288 Y +L RD T GPH++DL IR + + S G+ K L+ L LA Sbjct: 343 YLAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLVLAHARL 402 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + +G + L+D+ A+ LD RR L R+ Q F++ + E + Sbjct: 403 VGDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTAL-GERACYL 461 Query: 349 TVEKGKITD 357 TV G++++ Sbjct: 462 TVANGRVSE 470 >UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQE4_9BACE Length = 367 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 82/371 (22%), Positives = 148/371 (39%), Gaps = 19/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + FRN + A SP N + G N GKT++LEAI L + R+ + Sbjct: 1 MIVKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASSRRARYDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + + + ER+ + + ++ +G ELA ++ PE Sbjct: 61 IQFGVDHAFVKAEVFSRERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLNTVFFCPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 L+ G RR FLD P + A + +RL +Q+ LR + L Sbjct: 121 DLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPSLLDTLDD 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW---EKETEYAE 232 ++ + + +RA + + ++F L ++ + E + Sbjct: 181 FNLRMAQTGAILIHYRAHFVRRLRETAPPIHREFSGGREELGLKYETVSTVTDPEGGVKD 240 Query: 233 VL-------ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 +L E + + + GPHK DL + G S+GQ + +L+LA Sbjct: 241 ILSALIAHQESHRRAELEARQCLSGPHKDDLTVELGGVAARQFASQGQTRTAALSLKLAA 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E ++G + L+DD SELD R+ + +R+K QVF++ E + + E Sbjct: 301 REIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVFITCCEDEKLEHL--EGG 356 Query: 346 KMFTVEKGKIT 356 K+ + G + Sbjct: 357 KVLRIHNGALV 367 >UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4Q9_JONDD Length = 415 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 165/400 (41%), Gaps = 46/400 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + D+R+ E D+ +PG N LVG NG GKT+++EAI L + R + Sbjct: 1 MYVSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + ++ R+ +R + L +K R++ + + + ++ + PE Sbjct: 61 IRVGAQRALIRSRVVRGDRAQVVELELLHGKANKARVNRGQPGRASTVLGIVKTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------YEQ 173 L+ G P RR +LD P + ++ ++++QR+A L+Q+ R Sbjct: 121 DLVLVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQLMRGGASHASDAT 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCK-----------QFLPEFSLTFSFQ- 221 L WD+ ++ L QI R A +A +A + ++ P Sbjct: 181 LAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRYRPSLESFLDEPM 240 Query: 222 ----RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 E YAEVL R R+ + GPH+ D+ + PV+ S G+ Sbjct: 241 PAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDDVEQTLNNLPVKGYASHGESWSY 300 Query: 278 MCALRLAQGEFLTR--------------------ESGRRCLYLIDDFASELDDERRGLLA 317 A+RLA +T + + ++DD +ELD RR LA Sbjct: 301 ALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDVFAELDVRRRRQLA 360 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 + A QV ++A A+ V D + +V G +TD Sbjct: 361 D-IAAQARQVIITAAVAQDVPDQL--RGRTLSVTLGAVTD 397 >UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=Methylococcus capsulatus RepID=RECF_METCA Length = 359 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 182/356 (51%), Gaps = 2/356 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L I D RNIE+A L+ G N L GANGSGKTS+LEAIY L G++FRS Q GR+ Sbjct: 1 MALLKLDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++ + G + A+G+ + + +VR+ G A+L L P LI P Sbjct: 61 IRFDRPCLTVSGSIGRPGAGIAVGVRLGR-SEKEVRVGGRSCDSSAQLIRLFPAVLIHPA 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 LL G P++RR LDWG FH E G+ R L+QRNA LR L W E Sbjct: 120 SVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVLRGDAPGSSLAAWSGE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L I+ R+ Y I + L + + GW YA+ L + Sbjct: 180 LARWGTMIAELRSSYLDRIRMHFGEMVSALLGRTDVELVVRPGWRAGWSYADALAASQPT 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 DR+L YT GP K D + G P D LSRGQLKLL AL LAQ L + R L Sbjct: 240 DRRLGYTEPGPQKGDFAVLVGGRPARDYLSRGQLKLLTYALLLAQAGLLEADQPGRVCLL 299 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISA-EHVIDMSDENSKMFTVEKGKI 355 +DD ASELD + L S +K+T Q FV+ A + V + +++F VE+G+I Sbjct: 300 VDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTARVFHVEQGRI 355 >UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=Chlorobium/Pelodictyon group RepID=RECF_PROVI Length = 371 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 83/352 (23%), Positives = 151/352 (42%), Gaps = 17/352 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +FRN + G N + G NGSGKTS+LE I+ + F S G Sbjct: 1 MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + F+L + ETA+ L+ K+ K++IDG + + +P +P Sbjct: 61 LSFSAGYFLLTALFESSSGIETAVRLSYTKESGKKLQIDGNELKPFSLHIGSIPCISFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-----EQL 174 +++G P RR FLD ++ + +RLL+QRNA L+Q+++ L Sbjct: 121 PEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGKDRSML 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW---------- 224 + W + L A ++ R + A + + + ++ Sbjct: 181 QLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLEPVPES 240 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + + + N +++ T GPH+ +L +DG + S+GQ + + +L+LA Sbjct: 241 ELRERFLQRFQENEQQEILRGQTLSGPHRDELIFLSDGRESKRYSSQGQQRTFLISLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++ + G + L+DD SELD +R + L+ Q +S+ ++ Sbjct: 301 LFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSADLKN 351 >UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MEK9_BRAFD Length = 414 Score = 304 bits (778), Expect = 4e-81, Method: Composition-based stats. Identities = 93/410 (22%), Positives = 153/410 (37%), Gaps = 57/410 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + DFR+ L + PG LVG NG GKT+V+EA++ L + R + Sbjct: 1 MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + ++ R + L ++ R+ G + ++ +L + L PE Sbjct: 61 VHRGESTAIVRASFVRAGRPLQVDLEITPGKSNRARLQGQNVPRLRDLLGEVRAVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------------ 168 L+ P+ RR FLD F P F + ++ R+LKQR L+Q+ Sbjct: 121 DLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSSGRSV 180 Query: 169 -------TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF------- 214 T L WD++L ++ R ++ + + + + Sbjct: 181 GGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAEQALD 240 Query: 215 -----------SLTFSFQRGW---------------EKETEYAEVLERNFERDRQLTYTA 248 ++ E E+L + + T Sbjct: 241 LPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDRGATL 300 Query: 249 HGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR----RCLYLIDDF 304 GPH+ D+ IR P + S G+ L ALRLA + L E G + ++DD Sbjct: 301 TGPHRDDMEIRLHDFPAKGYASHGESWSLALALRLASYDLLRLEEGDLGDGEPILILDDV 360 Query: 305 ASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 SELD RR L R+ T SQV ++ + + D + + V G Sbjct: 361 FSELDTRRRERL-GRIVTTASQVLITTANDGDIPDSLEGEIHVVDVTLGA 409 >UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=Sphingobacteriales RepID=D2QG11_9SPHI Length = 368 Score = 303 bits (776), Expect = 8e-81, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 154/366 (42%), Gaps = 16/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N E S N LVG NGSGKT++L+A+Y L ++ Q Sbjct: 1 MHLEKLSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSKSAFQSQDAMS 60 Query: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H+ + F++ G + ++R I ++ + + D +++E P+ L+ P Sbjct: 61 ILHDTDYFIIDGIFEEHDDRTVQITISLQRGQRKVLMADKKPYERISEHIGRFPVVLVAP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQL 174 L+ + RR F D +P + + +++LKQRN+ L+ + L Sbjct: 121 NDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLLKLFAERNQVDNDLL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 +D+ L+ L ++I R ++ + +A+ Sbjct: 181 DTYDEPLLELGQKIHDRRRQFIDEFLPGFRSHYAYLSDDREEVTIQYESEVSNPGFADEF 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRA---DGA---PVEDTLSRGQLKLLMCALRLAQGEF 288 RD L T G HK D +G P++ S+GQ K + AL+LAQ Sbjct: 241 RHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQPPVPLKKFGSQGQQKTFVIALKLAQFAQ 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAE---HVIDMSDEN 344 L E + + L+DD +LDD R G L ++ + Q+F++ E ++ + Sbjct: 301 LQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMDEGVFGQLFITDARPERTRQLLTNVKAD 360 Query: 345 SKMFTV 350 K F + Sbjct: 361 IKFFEI 366 >UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B043_RUBXD Length = 374 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 157/362 (43%), Gaps = 9/362 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FRN A LSPG N LVG N GKT++LEA+ + G + R+ V+ Sbjct: 4 HIRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVV 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLM---PMQLIT 118 R + + R+ E + + ++ +DG +A A + Sbjct: 64 RWGEGFVRVEARVVDGGHERRLAVGYAPGSRKRLTVDGAPVESLARYAAGVAGVRAVTFF 123 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQL 174 P+ ++ G P RR+FLD P + A + R ++QRN LR++ L Sbjct: 124 PDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDGLSSERTL 183 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 WD++++ L + RA +A + + + + E YA+ L Sbjct: 184 ATWDRKVVELGLVLLEGRAAAAAPLDEHFRASMRALYGPQKAAVGYSYSATPE-RYAQAL 242 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 D + T+ GPH+ DLRI +G + S+GQ +L AL+ A +++ +G Sbjct: 243 REAHSADIERGITSVGPHRDDLRILLEGVDLTTYGSQGQQRLATLALKFAARDYIRDATG 302 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + + L DD SELD+ RR LA + +Q +S + + + +++ + G Sbjct: 303 QDPVLLFDDVMSELDERRRDYLAGCFLES-TQAVISTTNLRYFEPGALRRARVLGISGGS 361 Query: 355 IT 356 I+ Sbjct: 362 IS 363 >UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia mucilaginosa RepID=D2NQA9_9MICC Length = 450 Score = 302 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 79/382 (20%), Positives = 140/382 (36%), Gaps = 31/382 (8%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + D+R L LS G +G+NG GKT+++EAI + R G ++ Sbjct: 39 YIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPLV 98 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + R ++T ++VRI+ + E + L +PE Sbjct: 99 RAGASRAYIRTRTVRGSQQTVTEFEIAPGQSNRVRINRAAPVRAKEALGIARTVLFSPED 158 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-------EQL 174 L+ G P RR F+D P S +R+L+QRN+ L+ + R L Sbjct: 159 LQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDENALSTL 218 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF---------------LPEFSLTFS 219 WD++L L Q+ + R + Sbjct: 219 SVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSMGERSI 278 Query: 220 FQRGWEKETEYAEVL----ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 + + E L + + T GPH+ D+ + G PV+ S G+ Sbjct: 279 EHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVKYFASHGESW 338 Query: 276 LLMCALRLAQGEFLTRES---GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 AL+LA + G + ++DD +ELD RR L + + + QV ++ Sbjct: 339 SFALALKLASWFVHVEDDSSVGSSPILILDDVFAELDSARRHRLGAMVADAE-QVLITCA 397 Query: 333 SAEHVIDMSDENSKMFTVEKGK 354 + + + ++ +V G+ Sbjct: 398 VLSDIPEELG-DYRLVSVTAGR 418 >UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=Rhodothermaceae RepID=RECF_SALRD Length = 412 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 21/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FR ++ L+P N L GANG+GKT+VLEA++ L ++F + + Sbjct: 1 MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +R + F + GR+ Q E + L + ++G + ++A++ +P+ + +P Sbjct: 61 VRKDAPYFEIEGRIGQVREEPMTVRLAYVPGEGKSIFVNGAELDRLADIVGTLPVVVFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT------RYEQ 173 E + L GGP RR F++ + +R +QRN LR E Sbjct: 121 EDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPPDEL 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF---LPEFSLTFSFQRGWEK---- 226 L PW ++L+ L +I R ++ A D+ + ++ ++ + Sbjct: 181 LAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPDATP 240 Query: 227 ---ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E E+ L R ++R T GP + +L R D V S+GQ + AL+L Sbjct: 241 DAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVRRYGSQGQHRTFAMALKL 300 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISA---EHVID 339 AQ +L + + L L+DD +LD ER G+ L++ Q V+A E ++ Sbjct: 301 AQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPFEPALN 360 Query: 340 MSDENSKMFTVEKG 353 + + V G Sbjct: 361 AEPASHRALQVRPG 374 >UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=Ammonifex degensii KC4 RepID=C9RA71_AMMDK Length = 358 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 168/363 (46%), Gaps = 18/363 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FRN + S G N L G N +GKT++LEA+Y + GR+FR+L+ + Sbjct: 1 MWIRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + ++ G++ E + + K+G + G + + + L PE Sbjct: 61 VRTGETTTLIKGKIATAWGEIETEV-RFKKGTKLLFYQGKPASR-RDFPGEKVVLLFRPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 ++ G P RR F + PG+ + +R L+QRNA LR + E+L W + Sbjct: 119 DLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELEIWTE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW-------EKETEYAE 232 L+ + R E I + ++ + + L + ++AE Sbjct: 179 ALVSAGALLYRLRVEGLGLIGPLTSSLYRELVGK-KLVLRYATNAVSPAKEKPLAEQFAE 237 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L E+++ L T GPH+ D +G + SRG+++ + AL+LA+ + L + Sbjct: 238 ALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRYKGSRGEVRAAVLALKLAEAKLLEKM 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 +G R ++ +DD SE D +RR LA L+ Q FV++ E + + F +E+ Sbjct: 298 TGERTIFFLDDVFSEFDPQRRRALALYLEER--QSFVTSAEPELKLP-----GRTFLIEQ 350 Query: 353 GKI 355 G++ Sbjct: 351 GRL 353 >UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=Chlorobaculum RepID=RECF_CHLP8 Length = 368 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 142/347 (40%), Gaps = 16/347 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I +FRN + + G NGSGKTS+LEAI+ R F Sbjct: 1 MRLDSISIANFRNHTLLEFEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60 Query: 61 IRHEQEAFVLHGRLQ-GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 ++ +E F + G+ T + + + + ++ ++ + + +P TP Sbjct: 61 LKFGEELFTIRSSFTSGQGIATKVSVAYSPKREKRILVNEQELQTFSSHIGTIPCVTFTP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLR 175 ++NG P RR F+D + + + +R+L+QRNA L L Sbjct: 121 REMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFIDSALD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 +L+ A +I R + + + D + + +Q + Sbjct: 181 VLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIPEGAEPSILYQSSLGHHENLYEKDK 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + E E +++ Q T GPH+ DL+ + + S+GQ + + A+++ Sbjct: 241 IQQVFRERFETLKQQELQRRQTLAGPHRDDLQFYLNKREIRKYASQGQQRAFLVAMKMTL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 +L SG + L+DD SELD+ G + L AT+ QV +++ Sbjct: 301 QGYLYEASGEIPITLLDDLFSELDEVVSGTMVETL-ATKGQVIITST 346 >UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=Chlorobiaceae RepID=RECF_PROA2 Length = 370 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 77/352 (21%), Positives = 145/352 (41%), Gaps = 16/352 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I++FR + S G N + G NGSGKT++LEAI+ + F + Sbjct: 1 MRLDEIKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + E+F+L + + + + G + ++ + K + L L+P L +P Sbjct: 61 MNFSAESFLLKSLFTSDTGCQYRVHVDFSTNGGKSISLNNSQLEKFSALIGLIPCILFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL----RQVTRYEQLR 175 T+++G P+ RR FLD + +R+L+QRNA L + + + Sbjct: 121 AEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALLHSSWDRSSPAPDMN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW------EKETE 229 W + L I R ++ ++ +++ Sbjct: 181 IWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVSSDRAG 240 Query: 230 YAEVLERNF----ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 A+ L F +++ T GPH+ ++ DG+ V+ S+GQ + + AL++A Sbjct: 241 IADSLMHRFGEIQHQEQVRKQTLLGPHRDEILFYLDGSDVKKYASQGQTRTFLIALKVAL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 FL + G + ++L+DD SELD R + + Q +++ + Sbjct: 301 QRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGL 351 >UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIM8_EGGLE Length = 420 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 147/367 (40%), Gaps = 20/367 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + + +FR+ E DL LVG N +GKT+V+E I L +FR + +++R Sbjct: 5 IAHISFLNFRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQLVR 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 L + R+ + + +G K ++G + A+L L+P TP+ Sbjct: 65 AGAPFARLTADVTDGSRQLELAVQM-AEGKKKHLLNGKP-KRTADLKGLVPSVTFTPDDL 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 L G RRA LD + + +++L+ +N L+ + ++ L+ Sbjct: 123 ELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKDEAPAALVGAMNETLV 182 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEY----------- 230 Q+S +RA +AA MA + L F WE+ Sbjct: 183 TCGAQLSCYRAALFEKLAASMASYYAEITDGHERLDAGFVPSWEEHDPLSFATRTFGRDE 242 Query: 231 -----AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 A+ L R +R GPH + DG S+GQ + ++ A +LA+ Sbjct: 243 AREALADALARRGGEERVRKRALVGPHADRIEFFIDGKNAALFGSQGQQRSVVLAFKLAE 302 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + ++ + L+DD SELD RR L + + Q F++ + + D + Sbjct: 303 ATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISG-DIQTFITTTNLAYFDDDLLGGA 361 Query: 346 KMFTVEK 352 ++ +EK Sbjct: 362 RIVELEK 368 >UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z2Y7_9GAMM Length = 376 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 176/357 (49%), Gaps = 3/357 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L + I RN+ L + N + G NGSGK+S++EA+ L GR+FRS + VI Sbjct: 9 RLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSSVRSVI 68 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 +H ++ ++ +++ ++G+ + K G+ +R+DG +AE A +P +I P Sbjct: 69 QHGRDDCIVQAQVRYRGSVRSLGIRRSKTGELTLRLDGEPMSSLAEFAAQVPTIIIDPSS 128 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 + G P RR +D FH E GF W +R+LKQRNA LR+ Q PW +EL Sbjct: 129 TDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQRNAMLRRGMMRGQ-DPWLREL 187 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFER 240 + ++ +R + + + F+ GW+ L R+ E Sbjct: 188 SRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADTELVFRFGWDASLSLEAGLARSTES 247 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D +T GPH+ADLR++ G + D SRGQLKL + ALRLAQG L G LYL Sbjct: 248 DIAQGFTHVGPHRADLRLQWQGRSMSDVFSRGQLKLAVIALRLAQGRVLAESGGGAPLYL 307 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAI-SAEHVIDMSDENSKMFTVEKGKIT 356 +DD +ELDD + L+ T SQV ++ + + S +F VE+G ++ Sbjct: 308 VDDLTAELDDHHALQVCRMLEQTSSQVVLTTVSELAQERPWMHDVSSVFHVEQGCVS 364 >UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=Nocardioides sp. JS614 RepID=RECF_NOCSJ Length = 420 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 95/421 (22%), Positives = 156/421 (37%), Gaps = 71/421 (16%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFR+ TA++ LSPG +G NG GKT+++EAI L + R + Sbjct: 1 MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + + R + + + ++ R++ + + +L L+ + +PE Sbjct: 61 VRAGADQAVVRAAVVRDGRTAVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--------- 171 TL+ G P RR FLD P ++ R+L+QRN L+ + Sbjct: 121 DLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGGFA 180 Query: 172 --------------------------------------EQLRPWDKELIPLAEQISTWRA 193 + L WD L ++ R Sbjct: 181 RKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL 240 Query: 194 EYSAGIAADMADTCK-------------QFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 + + + + P F L R E AEV ER Sbjct: 241 ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEV-ERRRGD 299 Query: 241 DRQLTYTAHGPHKADLRIRADG------APVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + + GPH+ +L + PV+ S G+ ALRLA + L G Sbjct: 300 ELDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLLR-ADG 358 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + ++DD +ELD ERR LA + + QV V+A A V + F V G+ Sbjct: 359 DDPILILDDVFAELDTERRAQLADLVAGAE-QVLVTAAVAADVP--AGLAGARFAVGNGE 415 Query: 355 I 355 + Sbjct: 416 V 416 >UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K2_SLAHD Length = 376 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 141/367 (38%), Gaps = 24/367 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + +RDFRN ET L +G NG GKT+VLEAI L +FR +I Sbjct: 4 RIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQELI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + E +L + + R+ IGL G I+G H ++ +P + +P+ Sbjct: 64 RWDAENSLLKAHMVSDVRDLEIGLAIGPTG-KTYSINGKK-HSGQDVQTTLPSVVFSPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 LL G YRR LD + +L+K +NA L+ + + + Sbjct: 122 MLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDGVTGPYIESVNDLI 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGW---------------- 224 +P A Q+ +R IAA MA+ L + W Sbjct: 182 VPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYIPSWHPMEVSKDVIEDVPFD 241 Query: 225 ----EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 E T E L + + + GPH + +G S+GQ + + A Sbjct: 242 LGKQEISTRLEEALHQRAVEEYERGRGLVGPHADKIMFYLNGRNASLYGSQGQQRSISLA 301 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 ++A+ + G++ + L+DD ASELD RRG L L Q F++ Sbjct: 302 WKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELL-HRDIQTFITTTDIGTFESE 360 Query: 341 SDENSKM 347 + + + Sbjct: 361 VVDEASV 367 >UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX6_9FIRM Length = 359 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 166/361 (45%), Gaps = 10/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN ++ P N +VG N GKT+++EA+Y L R+FR+ Q + Sbjct: 1 MYIKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E++ L +++ ++E+ + G + I + K +E + + L +PE Sbjct: 61 IQKEEKYANLACQIEERKQESYLRCILHGNG-KSLFIGKINISKTSEFIGRLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L + PK RR F+D + + + LLK+RN LR+ E L D+ Sbjct: 120 DIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTKIDETMLDILDQ 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWE----KETEYAEVL 234 +++ +I R + I + + +L ++G E ++ E E Sbjct: 180 QMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVKKIEKKELVEAH 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +RD + T G H+ D++ DG + + S+GQ +L+M A +L ++ S Sbjct: 240 LSSRKRDIETRITNVGIHRGDIQFLLDGKDILLSASQGQKRLVMIAFKLTILRYIEFISK 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 R+ + L+DD SELD ER+ L +K Q F++A + + N ++E GK Sbjct: 300 RKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITATHLPDSLKLEQTNC--ISIEDGK 356 Query: 355 I 355 I Sbjct: 357 I 357 >UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU2_HALNC Length = 359 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 109/359 (30%), Positives = 173/359 (48%), Gaps = 11/359 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 LT L I FRN+ D LS GFN LVG NG+GKTSVLEAIY L ++FR+ +I Sbjct: 5 HLTSLSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLI 64 Query: 62 ----RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 ++ V+ + ++ + + L + K ++R+ + + + +P+ + Sbjct: 65 ARYPDRDRGCAVVRAGVHQDDHDFFMALERCKD-QFRLRLGREEVPRASLFVAHLPVLAL 123 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 + L+ GP++RR F+D F+ F A++ R+LKQRNAALR E W Sbjct: 124 HAQSDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQSTE---IW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D I E+++ R + + + P+ S+ F G + + +E L RN Sbjct: 181 DPLFIQYGERLNEQRVAALDLLKTVLPQVFEALAPQLSVDMQFHPGHKSGLDLSEALARN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ERDR++ T GP +AD+ + + SRGQ+K+ AL LA + G+R Sbjct: 241 RERDREMGQTLIGPQRADILFTLNDYAFKSFASRGQIKVFTAALTLATAHIWQAQRGKRA 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L DDF SE D L L QVF+SA+ + + D +F ++ G+I+ Sbjct: 301 VLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQIDFPFD---AVFRLDAGQIS 356 >UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=Ruminococcaceae RepID=A8SBV6_9FIRM Length = 373 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 92/379 (24%), Positives = 164/379 (43%), Gaps = 31/379 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++++RNI A L + G NG GKT++LEAI+ L G++FR + + Sbjct: 1 MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERE-----------TAIGLTKDKQGDSKVRIDGTDGHKVAELA 109 +R + VL Q + E +G + + ++G + A LA Sbjct: 61 VRRGEAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAALA 120 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 P + P +L+ G P+ RR FLD PG+ ++ R+L+Q+NA LR Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHSA 180 Query: 170 RYEQ---------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF---LPEFSLT 217 ++ L + EL E + R EY +A + S+ Sbjct: 181 NGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSIR 240 Query: 218 FSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 ++ Q AE+L + E + + + G H+ DL + D P S+GQ + + Sbjct: 241 YAAQFAP---GGLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARVYASQGQQRSV 297 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 + +L++A+ + +G + L+DD SELD+ R+ L + +K Q FV++ Sbjct: 298 VLSLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVTSCDD--- 352 Query: 338 IDMSDENSKMFTVEKGKIT 356 D + +++ ++ G + Sbjct: 353 TDFLKTDGEVYRMDGGVLN 371 >UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPF3_9FUSO Length = 364 Score = 300 bits (768), Expect = 7e-80, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 170/366 (46%), Gaps = 18/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L +FR +E L FN + G NG GKTS +EA++ L G++FR+ + + Sbjct: 1 MYLKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R+ + ++ G+ + E I L D + K + +K + L+ + PE Sbjct: 61 FRYNKNRVIVFGKYINKNEEENI-LAIDVNEEKKDFYINRNKNKYIDYVGLLNIISFIPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 ++ G P RR F ++ + + + + +++LK RN +++ E++ +++ Sbjct: 120 DIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYSIYNE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQ---------RGWEKETE 229 + + I R E+ I+ + ++ P+ L + E + + Sbjct: 180 KFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEEIKEK 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 ++E ++R ER++ L Y+ GP K D +G + S+G+ K ++ +L++++ + L Sbjct: 240 FSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAKSFSSQGEKKSIIFSLKVSEIDML 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E L+++DD AS D+ R+ + + Q F+++ ++ K F Sbjct: 300 VKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTEDLNI------KGKKFI 353 Query: 350 VEKGKI 355 +EKGK+ Sbjct: 354 IEKGKV 359 >UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD4_CRYCD Length = 378 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 93/358 (25%), Positives = 159/358 (44%), Gaps = 17/358 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 LT L++R+FRN + L G L G N +GKTSV+EAI + ++FR+ QIGR I Sbjct: 12 RLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGRAI 71 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R Q A + ++ + R+ + L + +G R++G + +L L P P+ Sbjct: 72 RWGQTAASVIATIESDHRQLDLQLRIE-EGKRSYRLNGK-ARRARDLRGLFPAVTFVPDD 129 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L G RR LD F S+ +L++Q+N ALR + D+ L Sbjct: 130 LGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTVIDSIDEVL 189 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCK-----------QFLPEFSLTFSFQRGWEKETEY 230 + QI + R+ + + Q++P ++ Q +E+E Sbjct: 190 TLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWTFEREECL 249 Query: 231 A---EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 A L++ ++R + GPH + +G S+GQ + L+ A +LA+ Sbjct: 250 AIFTSTLQQARLQERLRRKSVVGPHADKVVFLINGHDAAHFASQGQQRSLVLAYKLAEAA 309 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + +R + L+DD SELD +RR S ++ Q+F++ + E+ D E + Sbjct: 310 VIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTDEIKEKA 366 >UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=Bifidobacteriaceae RepID=RECF_BIFAA Length = 403 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 75/359 (20%), Positives = 151/359 (42%), Gaps = 22/359 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + L PG N L G+NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + ++ + +T +G ++ R+DG + ++ +P TPE Sbjct: 61 VEKGHPSATVRANVEDAGEQRTYEITIAARGANRARVDGGKSQYMRDIVGWVPSVSFTPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--------- 171 L++G P RR FL+ P + + + KQR A L+Q++ Sbjct: 121 DQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDPEYGR 180 Query: 172 ----EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK 226 L W + I L Q++ R + + E ++ +++ Sbjct: 181 QAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEPSFDE 240 Query: 227 -------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 E + +R + + GP + DL +R + P + S G++ + Sbjct: 241 VLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMPAREFASNGEMWTMAL 300 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 AL++A E ++ + + + ++DD ++LD+ RRG + Q QV ++ +A + Sbjct: 301 ALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDF-ARRQDQVLITVAAASDIP 358 >UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LFM2_9BACT Length = 342 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 158/340 (46%), Gaps = 7/340 (2%) Query: 25 FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGE-ERETAI 83 N VG NG GKT++L+AIY L ++ RS ++H ++AF+L G + E I Sbjct: 2 VNCFVGDNGMGKTNLLDAIYYLSFCKSARSSTDVTNVKHGEQAFMLQGLYDDDTGGEDKI 61 Query: 84 GLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHN 143 + + ++R +G D + AE +P+ +I+P L+ GG RR F+D Sbjct: 62 AIGYHEGRRKQLRRNGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFMDTVIAQY 121 Query: 144 EPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWDKELIPLAEQISTWRAEYSAGIAA 201 + + A ++ L+QRNA L++ E + + + A I R + A Sbjct: 122 DATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKLFVETFTA 181 Query: 202 DMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD 261 ++ + E +LE+ R+R + YT HG HK DL + + Sbjct: 182 FFQGIYRELCYDPEQVNIVYESHGNRGELKPMLEQYRSRERLVGYTLHGIHKDDLLLYIN 241 Query: 262 GAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG-RRCLYLIDDFASELDDERRGLLASRL 320 G PV+ S+GQ K AL+LAQ +L +S R+ L L+DD +LD R + Sbjct: 242 GYPVKQEASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDIFDKLDAGRVEHIIRYA 301 Query: 321 KATQ-SQVFVSAISAEHVIDM--SDENSKMFTVEKGKITD 357 Q Q+F++ S E ++ + N K+FTV+ G+I + Sbjct: 302 AEAQFGQIFITDTSKERLLPILQLQRNYKLFTVKDGEIHE 341 >UniRef50_UPI00016B2627 DNA replication and repair protein RecF n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2627 Length = 347 Score = 296 bits (758), Expect = 8e-79, Method: Composition-based stats. Identities = 90/345 (26%), Positives = 166/345 (48%), Gaps = 8/345 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R+ R+ E ++ ++G NGSGKT++LEA+Y G +FR + Sbjct: 1 MDITHLEVRNLRSHELESRDITERVTVIIGKNGSGKTTLLEALYIALRGTSFRGS-DNDI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++H+++ + +H +R A + + K+ ID ++ +P+ L P+ Sbjct: 60 LQHDKDWWRIHVSTTNGDRSIAYDNSGENSPRKKILIDERKFQRMPS-NKKIPVVLFEPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 +L+G P RR F+D H P + T +R LKQRN L+Q + WD Sbjct: 119 DLRVLHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSNIFAWDM 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLER 236 + +I + R + I ++ T + L +S + + A +L Sbjct: 179 AMAQYGAEIISQRVMIISKINQELTKTYQSIAGNNDTVDLHYSHTLIDNIQQKLANMLYA 238 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 +FERD+ L +T+ GPH+ D+ +G SRG+++ ++ AL+ + + +G Sbjct: 239 SFERDKILGFTSVGPHRHDVMFEFNGQIAAKVASRGEVRSIILALKFIEVDITQEATGLS 298 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 + L+DD +ELD+ R+ LA + + +Q+F+++ +A ID S Sbjct: 299 PVILLDDVFAELDETRQRRLAEKCR--DNQMFITSTNAYTGIDTS 341 >UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWH9_DICNV Length = 356 Score = 295 bits (757), Expect = 1e-78, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 200/356 (56%), Gaps = 5/356 (1%) Query: 1 MSLTRLLIRDFRNIETAD-LALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M + L + FR++++A LA P N + G GSGKT++LEA+Y LG G++FR+ Q+ Sbjct: 1 MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I ++Q F L L ++ +G+ + +G +VR+DG + ++ LA L+P+ ++ Sbjct: 61 MIAYQQSYFRLIAELSDQDGNYFLGMERRARGY-RVRLDGQTLNGLSALAALLPVHIVYA 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + F+LL P+ RR FLD+G F ++ F W + LK RN AL + + +R W Sbjct: 120 DHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQDHYIRSWHP 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L AE+I R +Y + + +L + RGW + + L+ N Sbjct: 180 LLAETAEKIDILRRDYLKRLENRLNQYHAHLGGLQTLRIRYDRGWHG--DLRQTLDENLA 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT G H+AD R+ + + T SRGQ K ++CAL L+Q + + S + + Sbjct: 238 RDQQIKYTRDGIHRADWRLFCEDYDIAHTFSRGQQKTVLCALILSQADEIRARSKKVPVI 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +ELD ER+ LL L+A+++Q+F++A+ A+ ++ +SD + + F +++G I Sbjct: 298 LVDDITAELDIERQQLLLRFLQASEAQLFITALEAK-LLAISDSDCEQFYLDRGHI 352 >UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUF2_9BACT Length = 364 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 157/363 (43%), Gaps = 12/363 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 ++R+ +++FRN +L L PG + G NG GKT+ LEA+ L R+ RS + Sbjct: 3 FISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSIRSSHTRHLK 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + E + F L L R + ++ ++ +DG ++ ++ PE Sbjct: 63 KWESDFFSLRACLDRVTRP-ELDMSVYYGDKRQLSLDGNRVPTTSDFIGVVKSVAFMPED 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 ++ G +RR +LD PG+ + + ++ LK RN L++ + +L WD Sbjct: 122 IEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLELDVWDDI 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE-----YAEVL 234 LI ++ R +A ++ ++ L +F L ++ K Y E L Sbjct: 182 LIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDFLLELQYKNSLAKNATDLRSVYIERL 241 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 N ERD+ T GPH+ DL I +G + + S GQ +L L+ A E L Sbjct: 242 LENRERDKLYKMTHQGPHRDDLLINLNGRSLSNYGSEGQCRLSSLILKAAAVELLLPVEK 301 Query: 295 RRC-LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 C + LIDD ELD+ R + + QVF++ + D K + V+ G Sbjct: 302 PDCLILLIDDVLGELDEFSRRAFLKCV-SRGDQVFIACTDIPA--GLEDYEYKSYEVKAG 358 Query: 354 KIT 356 I+ Sbjct: 359 VIS 361 >UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=Anaerococcus RepID=C7REZ8_ANAPD Length = 359 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 86/361 (23%), Positives = 162/361 (44%), Gaps = 11/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN ++ + N +G N GKT++LE++Y L + +F+ ++ + Sbjct: 1 MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R Q L G ++ + + K D + ++G + +L L + L TPE Sbjct: 61 VRFGQSQMKLAGTIRKGRSFKEVFIEV-KDNDKSIFVNGVKYDRRKDLRSLFKIVLFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---YEQLRPW 177 ++ GP RR +D + + + ++L QRN L++ EQL + Sbjct: 120 DLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYFKEQLEAF 179 Query: 178 DKELIPLAEQISTWRAEYS---AGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 DK L L+ +I R ++ A++ + + E L++ + TEY EV Sbjct: 180 DKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIEAKSLTEYEEVF 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + D + + G H+ ++ I +G + S+GQ + + +RLA+ + +G Sbjct: 240 RSARDLDFKYLTSQRGIHRDEIEISINGKNTKSFASQGQQRSAILNIRLAEVRLIKEVTG 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L DD SELD++R L LK Q ++A + + + + E K+ + GK Sbjct: 300 DEAVILFDDVFSELDEKRSMFLLENLKGF--QTIITATNTKSLEYVDRE--KISYILDGK 355 Query: 355 I 355 I Sbjct: 356 I 356 >UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT5_9GAMM Length = 357 Score = 294 bits (754), Expect = 3e-78, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 179/358 (50%), Gaps = 8/358 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L R RN+ G N LVG NG+GKTSVLEA + L GR+FR+ Q+ RV+R Sbjct: 2 LEGLWWRGVRNLSEQTFEPGEGINRLVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVR 61 Query: 63 HEQEAFVLHGRLQG-EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 ++ + GR++ E +G++ +G + R+DG A +A +P++++ Sbjct: 62 SGEKGLWIGGRVRDLHGGEHRLGVS--WEGTRRSRLDGRWMEGHASVAEWLPVRVLHAGS 119 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 F LL G P+ RR LDWGCFH+ G+ W +R +QRNAALR+ R +++ L Sbjct: 120 FDLLTGSPEERRRLLDWGCFHSVRGYRWHWQQWRRSHEQRNAALRKGDRRAARE-FERPL 178 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL---TFSFQRGWEKETEYAEVLERNF 238 + E I+ R Y + ++ + F L + GW+++ +E + R+ Sbjct: 179 VDAGENITQARQAYIDRWEINTSEAARVFGFSQRLGDFQVHLRVGWDRDRSLSEAIARSR 238 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 + D + + GP +AD+ +R DG + SRG+ K L+ AL Q L RE+GR + Sbjct: 239 DSDEERGFGQVGPQRADIDLRFDGRVAAE-ASRGEQKRLITALTGGQARMLEREAGRAPV 297 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 L+DD SELD L L QV V+ + ++++F VE G +T Sbjct: 298 VLLDDVVSELDVAAVEGLMCGLLEFGWQVLVTTVEPHIPGLEGGRSTRLFHVEHGVVT 355 >UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM4_9FIRM Length = 377 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 155/374 (41%), Gaps = 27/374 (7%) Query: 7 LIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQE 66 + FRN + LS + G N GKT++LE +Y G +FRS +++ + Sbjct: 2 RLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGET 61 Query: 67 AFVLHGRL---QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFT 123 GE R + + K+ + + +GT E + + L TP+ Sbjct: 62 DCAAEVTYCDRYGENRLLVKRIQEGKRTRKQAQRNGTPI-SPKEHYGSLNLVLFTPDDLQ 120 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-----PWD 178 L+ G P RR FLD ++ A N R+L+QRN LR E+L WD Sbjct: 121 LVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFVWD 180 Query: 179 KELIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRG------------ 223 + L A I R + I A + T Q + +L++ +R Sbjct: 181 EALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGLSL 240 Query: 224 WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E + Y E L++ D YT+ GPH+ DL I +G P+ S+GQ + AL+L Sbjct: 241 SEWQAFYQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLRSFGSQGQQRTAALALKL 300 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 ++ EF+ + L+DD SELD+ RR +L + Q ++ + + S Sbjct: 301 SELEFIFHSKEEYPILLLDDVLSELDEGRRRMLLDGMGGK-VQTLLT--VNDRALARSSG 357 Query: 344 NSKMFTVEKGKITD 357 + + V G + + Sbjct: 358 DVVFYEVRSGWVEE 371 >UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9_FUSNN Length = 369 Score = 294 bits (753), Expect = 4e-78, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 162/370 (43%), Gaps = 20/370 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + +FRN+E + LS N G N GKTS+LEAIY G +F++ + + Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 61 IRHEQEAFVLHGRLQG--EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I++ + F+ Q + ++ + + + + + Sbjct: 61 IKYNFDEFISSISYQDYIANNKISVRFKNIAGAKKEFFFNKKRI-SQTDFYGKINIIAYI 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPW 177 PE L+NG PK+RR F D + + T N +LLK RN L++ R E+ + Sbjct: 120 PEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFAIY 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE-YAEVLE 235 +KE I A I R EY ++ + ++ L ++ +K + E+++ Sbjct: 180 EKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEMIQ 239 Query: 236 RNFERDR--------QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 + +R+ + ++ GPHK D + +G + + S+G+ K ++ +L+L++ E Sbjct: 240 ESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKISASQGEKKSIIFSLKLSEIE 299 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 + + + +IDD S D++RR + QV +S+ + +K Sbjct: 300 IIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDKLDI------EAKN 353 Query: 348 FTVEKGKITD 357 F VEKG I D Sbjct: 354 FYVEKGIIKD 363 >UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT Length = 352 Score = 294 bits (752), Expect = 4e-78, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 153/349 (43%), Gaps = 16/349 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + + RN L + G NGSGK+++LEAI+ L G++ S + Sbjct: 1 MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD------SKVRIDGTDGHKVAELAHLMPM 114 I++ ++ ++ ++ ++ + L K D K RI+ + A + Sbjct: 61 IQYGKKFCSINADIETKDDRFNMELQIIKNEDFENASIKKARINKV-AKSIQYFAGIFNS 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--- 171 L +P+ L+ G P RR ++D + + + ++ + ++QRN L ++ + Sbjct: 120 VLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFGG 179 Query: 172 -EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY 230 ++ + +++ E I R + A I + +T K + + + ++K Sbjct: 180 QGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKT---KLELNYKKNEIS 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E L R+ + GPH+ D I + V + SRG+ + + +L++A+ F+ Sbjct: 237 IERLNEFKSREIAAMTSLLGPHRDDFEIHFNDHNVTNFGSRGEQRSCVLSLKIAEISFIE 296 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 ++ + + L+DD SELD + + + + ++Q +++ S + Sbjct: 297 KKKNDKPVLLLDDIFSELDKKHQTAVFDVIN--RNQTTITSTSMPDFPN 343 >UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax=Actinomycetales RepID=RECF_MICLC Length = 404 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 157/365 (43%), Gaps = 27/365 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ ADL L+PG L+GANG GKT+++EAI LG ++ R ++ Sbjct: 1 MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + GR+ R A+ + ++V I+ + E ++ + PE Sbjct: 61 VRFGRDRARIAGRVHRGSRTVALKVEILPGRSNRVAINRGASVRAKEGLGILRTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--------RYE 172 +L+ G P RR LD P A ++ +R+L+QRNA L+ Sbjct: 121 DLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGPEEDA 180 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-------LPEFSLTFSFQRGWE 225 L WD+ L ++ R +A + + + T RG Sbjct: 181 TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH 240 Query: 226 KE--------TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 E T+ LE E +R T GPH+ +L + AP S G+ L Sbjct: 241 AEVPAVADLATDMRRTLEAQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL 300 Query: 278 MCALRLAQGEFLTRESGRR---CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ALR+A + L + + ++DD +ELD RR LA+ + + QV V+A + Sbjct: 301 ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAE-QVIVTAAAL 359 Query: 335 EHVID 339 E V + Sbjct: 360 EDVPE 364 >UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=Acholeplasma laidlawii RepID=RECF_ACHLI Length = 349 Score = 292 bits (749), Expect = 9e-78, Method: Composition-based stats. Identities = 85/333 (25%), Positives = 162/333 (48%), Gaps = 11/333 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 +T + +R+FRN+E + ++ + G NG GKTS+LE+IY ++ RS +I+ Sbjct: 2 ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ + +L + + I LT + + I+ ++ K+++ + + + PE Sbjct: 62 YDKPYASV--KLIEDSKLHEIVLTPN---GKRTTINKSEVRKISDYIGQLRVVMFAPEDL 116 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR---QVTRYEQLRPWDK 179 L+ G P RR FLD + ++ K++LKQRNA L+ +T Y L + Sbjct: 117 MLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLNILGE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L + QI R ++ + ++ +F + ++ KE + + L+ + Sbjct: 177 QLYDVGIQIFDERQKFIEALNQKFKTIQTKY-KDFEVEMLYEPNVTKEN-FLKHLKTKQK 234 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D T G HK D ++ G +D+ S+G +L++ L+LA E++ + + Sbjct: 235 QDIMYETTTAGIHKDDFKLLYKGLNAKDSASQGTSRLIVIELKLALLEWIKEVTKTDAIL 294 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 L+DD SELD ER+ L S+L + QVF++ Sbjct: 295 LLDDVLSELDLERQNLFMSQL-SKNHQVFITTA 326 >UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax=Actinomycetales RepID=RECF_MYCA1 Length = 385 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 158/386 (40%), Gaps = 33/386 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +RDFR+ ADL L PG +G+NG GKT++LEA++ + R + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + V+ + + RE A+ L +K R++ + E+ ++ L PE Sbjct: 61 IRAGADRTVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---------RY 171 L+ G P RR +LD P ++ ++L+QR A L+ ++ Sbjct: 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP---EFSLTFSFQRGWEKET 228 + L WD L Q+ R + +A ++ + P S+ + G Sbjct: 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAAAA 240 Query: 229 E------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 E L + + GPH+ DL + + S G+ Sbjct: 241 EVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQVAKGFASHGESWS 300 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 L +LRLA E L + + L+DD +ELD RR LA+ ++ + QV V+A E Sbjct: 301 LALSLRLAAYELLRADESD-PVLLLDDVFAELDAARRRALAAVAESAE-QVLVTAAVLED 358 Query: 337 VIDMSDENSKMFTVE-----KGKITD 357 + + ++ VE G++++ Sbjct: 359 IP--AGWQARRLFVELRDTDAGRVSE 382 >UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=Bifidobacterium RepID=B8DV08_BIFA0 Length = 475 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 82/393 (20%), Positives = 156/393 (39%), Gaps = 48/393 (12%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++RL + FR+ L PG N L G NG GKT+++EA+ L G + R+ ++ Sbjct: 4 VSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQPLVE 63 Query: 63 HEQEAFVLHGRLQG------------EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAH 110 A + ++ ++R T LT +G ++ R+DG + ++ Sbjct: 64 QGFPAAAIRANIEELSEDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYMRDIVG 123 Query: 111 LMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT- 169 +P+ TP+ L+ G P RR+F+D G+ + KQR A L+Q+ Sbjct: 124 RVPLVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHIAKQRAALLKQIGA 183 Query: 170 -------------RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFS 215 R L W + I +++ R + ++ + + Sbjct: 184 QEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYFGTIVQELSDVDQT 243 Query: 216 LTFSFQRGWEK------------------ETEYAEVLERNFERDRQLTYTAHGPHKADLR 257 T ++ +++ + +E +R + + GP + D+ Sbjct: 244 ATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEVARGVNLIGPQRDDVS 303 Query: 258 IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLA 317 I +G P + S G+ L AL++A L R++G R + ++DD ++LD RR + Sbjct: 304 IELNGMPAREYSSNGESWTLALALKMALYRLLERKAGERPIVVLDDVFAQLDPSRRAKIM 363 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 Q QV ++ +A V ++ + V Sbjct: 364 EF-ALRQDQVIITVAAAGDVPELPGDAHA--HV 393 >UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRR9_BDEBA Length = 374 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 150/376 (39%), Gaps = 21/376 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M RL + +FRN L+ SP N +G NG GKT++LEA+Y + G +FR + Sbjct: 1 MIFERLRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFRYSDNSTL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I V+ + + + L K + ++ + A++ + + +PE Sbjct: 61 INTNTSESVIQALITQNDLHYKLKLGLSK-SRKVLTLNDKRVNS-ADIRKIFASVVFSPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--------VTRYE 172 + + G +RR +D + ++ ++ LK RN L+ V Sbjct: 119 SLSSIKEGADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKVVTQN 178 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW-------- 224 L + + + LA ++ R G++ D + + S+ S + Sbjct: 179 LLESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNSSVDISVEYLVSDQNAVSF 238 Query: 225 ---EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 E E + L + + + GPHK D+ S+GQ + ++ + Sbjct: 239 TREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRFFCSQGQQRAIILSF 298 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 ++AQ + + G + ++DD SELD +R L + L +Q+FV+ S Sbjct: 299 KMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTLPESFS 358 Query: 342 DENSKMFTVEKGKITD 357 + ++ ++ G+I + Sbjct: 359 LDQLRVVRIKDGQILE 374 >UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=Chlamydia trachomatis RepID=RECF_CHLT2 Length = 365 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 16/365 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFRN L L P N + G N GKT++LEA+Y L GR+FR+ ++ Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR F + +E + + DK+G K+ DG K++EL L P+ L + + Sbjct: 61 IRFGASHFFIEAVFSHKEVFHTLSIQVDKKG-KKILFDGAPITKLSELVGLFPVILFSIK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR FLD + S + L QRNA+++ + + W+ Sbjct: 120 DIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA-ISAWNSP 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW---------EKETEYA 231 LI ++ R E + + L E +L+ ++ + + Y Sbjct: 179 LIAYGSLVAFLRNECTKKLNTIFQTLWDNTLKE-TLSLRYESSLITEESPTLNDIASNYY 237 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L +D L YT GPH+ +L + + PV S GQ L+ LR A+ +L Sbjct: 238 EQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSSEGQKHSLLAVLRFAECVYLQE 297 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 E L +DD + L D++R +L + QV ++ D S +F V Sbjct: 298 EFCIHPLLCMDDIHACL-DQQRLDQLLQLSNSLGQVVTTST---ICPDHRSTTSCIFHVT 353 Query: 352 KGKIT 356 + +++ Sbjct: 354 QAQVS 358 >UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z017_9CHLR Length = 409 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 161/404 (39%), Gaps = 49/404 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + +FRN DL + G LVG N GKTS+LEA+Y L +F + ++ Sbjct: 1 MYLTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQL 60 Query: 61 IRHEQEA-----FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGH------------ 103 I + + + + ++ + + ++G H Sbjct: 61 INFIEARQPLAVARIVADFSRGTNRHHLEIRLIQESNGQTSLNGNSTHVRKEVLLDGVKC 120 Query: 104 KVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNA 163 K + L P+ ++ G P+ RR +L+ + A S + L QRNA Sbjct: 121 KASTAVGQFNAVLFLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTKALSQRNA 180 Query: 164 ALR----QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTF 218 L+ + QL WD++++ Q+ R + T ++ L Sbjct: 181 LLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTRGAEVLRL 240 Query: 219 SFQRGWEK--------------------------ETEYAEVLERNFERDRQLTYTAHGPH 252 ++Q ++ + +AE L + + T GPH Sbjct: 241 NYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARGVTTIGPH 300 Query: 253 KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDER 312 + +LR A+G + SRGQ++ M +L++A+ ++ +SG+ + L+D+ +ELD R Sbjct: 301 RDELRFLANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDEVLAELDANR 360 Query: 313 RGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 R L RL ++ Q ++ + E + ++V +G++ Sbjct: 361 RQDLLERLTQSE-QALLTTTDLDLFSSEFVERATRWSVHEGRLN 403 >UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AUE9_CHLCH Length = 364 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 79/352 (22%), Positives = 144/352 (40%), Gaps = 17/352 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R + FRN + S G + GANGSGKTS+LE I+ + Sbjct: 1 MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + EAF L + + +T +G+ +V +D + + +P +P Sbjct: 61 LSFDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQVIVDRQEVKPFSSHIGRIPTITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----L 174 +L++G P RR FLD + + +R+L+QRNA L Q++ E+ L Sbjct: 121 YEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQLSSGEKSNRNTL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG---WEKETEYA 231 W +L L+ + R + + + + + +++ T + Sbjct: 181 PLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCPLHGNTTFQ 240 Query: 232 EVLERNFER-------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E+ + +R + Q T G H+ D+ + ++ S+GQL+ + AL+++ Sbjct: 241 ELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIKRYASQGQLRSFLIALKIS 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 Q + + L DD SELD R + + LK Q ++A+ + Sbjct: 301 QAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECG-QTIITAVEPRY 351 >UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBH2_9FIRM Length = 357 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 160/361 (44%), Gaps = 11/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + N +G N GKT++LE+IY L + ++F+S + + Sbjct: 1 MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ L G ++ E + + + + ++ ++ K +L L + L TPE Sbjct: 61 IMFNEKEMALDGLIRKNESFKNVKIRVN-ENKKEIFVNDIKYDKNKDLKSLFKLVLFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 T++ GP +RR +D + + ++L QRN L+ E+L + Sbjct: 120 DLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELMAF 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP---EFSLTFSFQRGWEKETEYAEVL 234 D+++I L +I +R +Y + I + S+ + + EY E Sbjct: 180 DQQIIRLNYKIYRYREKYISLINNYAKKNHSNLTENKEDLSIIYRPDIVAKDIEEYREKF 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 +N D + T G + ++ I +G + S+GQ + + ++LA + S Sbjct: 240 SKNKSYDLKYYRTTAGIQRDEIDIIINGKDSKKFGSQGQQRSAILNIKLANVNLIENTSQ 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + + L DD SELD++R L L Q ++A + + + + + SK+ ++ G Sbjct: 300 DKAIILFDDVFSELDEKRSNFLLENLGRF--QTIITATNTKSLDRV--DKSKIRKIKDGH 355 Query: 355 I 355 I Sbjct: 356 I 356 >UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VY05_9ACTO Length = 399 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 100/397 (25%), Positives = 169/397 (42%), Gaps = 42/397 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L PG L+G NG GKT+V+EAI L H + R + Sbjct: 1 MYVSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 +R+ Q A V+ +L +RE + + K ++ R++ K +L + + Sbjct: 61 VRYPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRARLNRAPA-KPRDLLGEIKV 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----- 169 + PE L+ G P RR FLD P + ++ +++LKQR + L+Q+ Sbjct: 120 IVFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQLGKSLRA 179 Query: 170 ----RYEQLRPWDKELIPLAEQISTWRAEYSAGI-------AADMADTCKQFLPEFSLTF 218 Y L WD+ LI A Q+ + R + + +A+ K+ E+ + Sbjct: 180 GMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLEYVNSL 239 Query: 219 SFQRGWEKETEYA------------EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 + G + A +VLE + GPH+ DL + D PV+ Sbjct: 240 AEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLDELPVK 299 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESG----RRCLYLIDDFASELDDERRGLLASRLKA 322 S G+ + ALRL E L E + ++DD SELD +RR L + Sbjct: 300 GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKALLEAISG 359 Query: 323 TQSQVFVSAISAEHVIDMSDEN--SKMFTVEKGKITD 357 + QV ++A A + + + S F + G + + Sbjct: 360 AE-QVIITAAVAGDIPTEIEADVLSVNFAKDTGSVCE 395 >UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ8_SORC5 Length = 383 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 155/367 (42%), Gaps = 15/367 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L RL IR+FRN+ D+ +P N + G NG GKTS+LEAIY R+FR+ ++ ++R Sbjct: 17 LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDK-----QGDSKVRIDGTDGHKVAELAHLMPMQLI 117 H R E R+ L +++ VRIDG +A A P+ Sbjct: 77 HGAPIASARARFV-ERRDALQPLAREQTAAVEHKRCVVRIDGNRPPSLASFATRSPVVAF 135 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-----RQVTRYE 172 E L G RR LD +P + + L+ R+ L Q Sbjct: 136 HAEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGGGAQAQASA 195 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYA 231 +L ++ ++ R +A ++ + P+ +L + G + E A Sbjct: 196 ELDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPGGGGDAEQA 255 Query: 232 -EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E L RD +GPH+ DL + DG P S+GQ + L AL+ A+ + Sbjct: 256 REALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVVASQGQHRALTLALKAAETAAIA 315 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM--F 348 G + L+DD +SELD +R L L + QVF++ + ++ +S+ F Sbjct: 316 SVRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRRDLIVTPGVPSSERRDF 375 Query: 349 TVEKGKI 355 VE G + Sbjct: 376 HVEGGAV 382 >UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFD9_9BACT Length = 358 Score = 290 bits (744), Expect = 4e-77, Method: Composition-based stats. Identities = 89/356 (25%), Positives = 158/356 (44%), Gaps = 6/356 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++RNI+ A L L FL+G NG GKT++LEAI + RAFR+ + + Sbjct: 1 MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFRARENEIL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + ++ EE E + K+ +V +DG + ++ P ++ E Sbjct: 61 LGPESGQAEIVYEIEHEEFEDSEARVLIKRKGKEVSLDGEAVRRASDFVGRFPAVTLSSE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR F+D + ++ A ++ +++RNA L++ + E +RP++ E Sbjct: 121 DLNIVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALLKRGSSMELMRPFEAE 180 Query: 181 LIPLAEQISTWRAEYSAGI---AADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 LI A + R + + A+ +T + + + E Y +L+RN Sbjct: 181 LIGPALAVIRKRDSVISELGSMASRFYETLSGSAEAIGVDYKPNAYPDDEDAYRAMLDRN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + T+ GPH+ D + +G D S GQ + + +L A + G Sbjct: 241 RKRDEIMHSTSKGPHRDDFELTLNGRSATDFASDGQQRSIALSLAFATIAYWRERFGVCP 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 LIDD ELD RR + L + Q+ + S + ++ VE G Sbjct: 301 ALLIDDVLGELDPVRRERFWNALDES-IQLIATGTELPD--AASGKEWLVYRVEDG 353 >UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=Bifidobacterium RepID=RECF_BIFLI Length = 412 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 147/360 (40%), Gaps = 21/360 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + PG N L G NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I Q + + + + T + +G ++ RI+ + ++ +P TP Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRARINSGSSLYLRDIIGKIPSVSFTP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------ 173 E L++G P RR ++ EPG+ R+ KQR L+Q+ Sbjct: 121 EDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQPMD 180 Query: 174 -----LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKE 227 L W + I ++ RA + +A A +T ++ +++ Sbjct: 181 AVLSGLEIWTGQFIEAGVVLTRMRAHVISLLAEPFAAIYADLAGAGEQVTLTYAPSFDEV 240 Query: 228 TEY-------AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 + +E +R + + GP + D+ + G P + S G++ + A Sbjct: 241 LMFNDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIPAREFASNGEMWTMALA 300 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 L++A E + G + + ++DD ++LDD RR + Q QV ++ + V D Sbjct: 301 LKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRAQILDF-ARKQDQVLITVAAEGDVPDY 359 >UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=Finegoldia magna RepID=B0S419_FINM2 Length = 355 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 146/349 (41%), Gaps = 17/349 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L + ++RN +L G N +VG N SGKT++LEAI G++F++ + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ + + + E I +T K + + ++ + + E + P+ Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITI-KSNEKILNVNEAFVNTIKEYNEYFECIVFKPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 ++ RR FLD + + T ++L +RN ++ EQL+ Sbjct: 120 DLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFNEQLKA 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---------FSLTFSFQRGWEKE 227 + +L I R Y + + CK E FS+ + + +++ Sbjct: 180 LNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRY-VEDMTDQK 238 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 Y + L E+D + T G H+ DL I + + S+ Q++ + +++LAQ + Sbjct: 239 NTYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKFFASQAQVRTAILSMKLAQLD 298 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + R + L+DD SELDD R + +K Q F++ Sbjct: 299 LSRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERAP 345 >UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M5C4_RHOPA Length = 394 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 93/374 (24%), Positives = 149/374 (39%), Gaps = 21/374 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +TRL + FRN +A L + LVG NG+GKT+ LEA+ L GR R ++ + Sbjct: 20 RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79 Query: 62 RHEQEA-FVLHGRLQGEERETAIGLTKDKQGD-----SKVRIDGTDGHKVAELAHLMPMQ 115 HE + + + ++G +G + + RID A + M Sbjct: 80 GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--Q 173 +TP L G RR F D + G S L R L+ RN L + + Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADM-ADTCKQFLPEFSL--------TFSFQRGW 224 L ++E LA ++ R + + +AA + A P + + + Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRA--DGAPVEDTLSRGQLKLLMCALR 282 E Y VL N RD T GPH DL + P + S G+ K L+ L Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPARE-ASTGEQKALLIGLV 318 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA + + + L L+D+ + LD RR L L +QV+++ ++ Sbjct: 319 LAHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAFAEI-G 377 Query: 343 ENSKMFTVEKGKIT 356 + +F V+ G+I+ Sbjct: 378 PAAAIFDVDNGRIS 391 >UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLS4_9ACTN Length = 361 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 73/357 (20%), Positives = 138/357 (38%), Gaps = 14/357 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FRN + S LVG N GKT+ +EA+ L G +FR +++ Sbjct: 4 IVNNISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLM 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 ++ +H L G+ R + T + +G H ++ + L TP+ Sbjct: 64 LEGEKQSKIHAHLTGDGRVIDLSCTISS-LRRQYEKNGKKCH-ATDIPGDLMSVLFTPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPWDKE 180 + YRR +D + + R ++QRN L+ V + L WD Sbjct: 122 LACIKRSASYRRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAWDTS 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------EKETEY 230 + + R + ++A ++ KQ L ++ E ++ Sbjct: 182 VALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELLDKF 241 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 L+ D + T GPH+ D+ +G S+GQ + ++ AL++A+ Sbjct: 242 LSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARMYGSQGQQRSVILALKMAEVLVSE 301 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 G + L L+DD SELD RR + + Q ++ + + + +K+ Sbjct: 302 EILGTKPLLLLDDVMSELDKSRREAIMNFTFG-DIQTVITTTNLGYFSPDMVDVAKV 357 >UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax=Rhizobiales RepID=Q3SMU8_NITWN Length = 385 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 145/374 (38%), Gaps = 21/374 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + RL + FRN A LVG NG+GKT+ LEAI L GR R + Sbjct: 9 RVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 68 Query: 62 -RHEQEAFVLHGRLQGEERETAIGLTKDKQG------DSKVRIDGTDGHKVAELAHLMPM 114 ++ + +QG +G D G + RID A + M Sbjct: 69 DNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRCRIDREPVASAAAFGDHLRM 128 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL 174 +TP L G RR FLD + S L+R L+ RN L + Sbjct: 129 VWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLEMRHHDDLW 188 Query: 175 -RPWDKELIPLAEQISTWRAEYSAGIAADM-ADTCKQFLPEFSLTFS--------FQRGW 224 +++ LA ++ RA+ + A + A P S+ + Sbjct: 189 CEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMENALLTEPAT 248 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRA--DGAPVEDTLSRGQLKLLMCALR 282 E Y E+L + RD T GPH DL + P ++ S G+ K L+ L Sbjct: 249 VVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKE-ASTGEQKALLIGLV 307 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA + +G L L+D+ + LD +RRG L L +QV++S ++S Sbjct: 308 LAHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPAAFANLS- 366 Query: 343 ENSKMFTVEKGKIT 356 S+ F V+ G+IT Sbjct: 367 AGSETFRVDSGRIT 380 >UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RECF_THERP Length = 396 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 160/393 (40%), Gaps = 38/393 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FR L L LVGANGSGKTS++EA+Y L ++FR+ + Sbjct: 1 MLVRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHL 60 Query: 61 IRHEQ-------EAFVLHGRL--QGEERETAIGLTKDKQGDSKVRIDGTDGHKVA--ELA 109 + L L + E I L D + ++ DG + E Sbjct: 61 VHRSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSLRAVEFV 120 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--- 166 + + L +PE L+ G P+ RR +LD + + A + R+L+ RN+ L+ Sbjct: 121 GTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEHRNSLLKSLA 180 Query: 167 ---QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQ-----------FLP 212 Q EQL WD++L+ + R + A + D + +LP Sbjct: 181 ERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDTQAQVLTTAYLP 240 Query: 213 EFSLTFSFQRGWEKET----------EYAEVLERNFERDRQLTYTAHGPHKADLRIRADG 262 L S Y E LER + + T GPH+ D+ Sbjct: 241 SIDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGPHRDDVEFLLGE 300 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA 322 P+ SRG +L + A +LA+ + R + + L+DD SELD + R L + L A Sbjct: 301 EPLTAFGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQQHRAHLLATLSA 360 Query: 323 TQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 +Q+ ++A ++ + + +F + G++ Sbjct: 361 LPAQLILTATESDVLETPVLSSLPLFRLNDGRL 393 >UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=Collinsella RepID=A4ECR8_9ACTN Length = 368 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 83/363 (22%), Positives = 144/363 (39%), Gaps = 20/363 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +R+ ++ LAL G L G N +GKT+++EA+ L G +FR + Sbjct: 3 MFARDLSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAEL 62 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + RL+G+ R +GL+ + G +G A + ++P L P+ Sbjct: 63 VHDGVGSCKVELRLEGDGRVLDMGLSAE-DGKRSFSRNGKRC-SAAGVRGVLPSVLFCPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPWDK 179 ++ G RRA LD + S R + QRNA L++ E L W+ Sbjct: 121 HLDMVKRGASVRRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREMLGAWND 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR---------------GW 224 + + R +A + Q + S+ GW Sbjct: 181 SIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDREELKGW 240 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E A L+ + + + + T GPH+ ++ G S+GQ + L+ A ++A Sbjct: 241 AYERMLA-ALDEHADEEIRRGVTLVGPHRDEIEFAVAGRSARSFASQGQQRTLVLAWKVA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + G L L+DD SELD ERRG + Q ++ + + D + Sbjct: 300 EVAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLI-GDDIQTVITTTNLGYFTDDLLDR 358 Query: 345 SKM 347 +K+ Sbjct: 359 AKV 361 >UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHH5_9ACTN Length = 379 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 137/367 (37%), Gaps = 24/367 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + +R+FRN + ++ +G N +GK++VLEAI + FR + +I Sbjct: 4 HIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSREMI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + + + + R+ + + + ++G H ++ ++P + +PE Sbjct: 64 RWGCDCADVKAHIVSDTRDLETSMRLT-ESSRSIAVNGKRKHGQ-DVLGILPSVMFSPED 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L+ G +RR LD + +++K +N+ ++ L + L Sbjct: 122 MQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSLMKNGIEGSLLDSVNDML 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEV------- 233 + + +RA +A +A + +L + WE Y++ Sbjct: 182 VTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVPSWEDADLYSDRMRDAAHF 241 Query: 234 -------------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 L + + + GPH L DG S+GQ + + + Sbjct: 242 FEVEECSNRMRRSLFNRHDEESRRGRALVGPHADKLFFYLDGRNATLYGSQGQRRSIALS 301 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 ++A+ + G + + L+DD ASELD+ RR L L Q F++ Sbjct: 302 WKIAEIGLIEDVLGLKPILLLDDVASELDESRREALIGLLHH-DIQTFITTTDMGAFEKS 360 Query: 341 SDENSKM 347 +++ Sbjct: 361 IANGARV 367 >UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K3_9FIRM Length = 368 Score = 286 bits (732), Expect = 9e-76, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 162/363 (44%), Gaps = 11/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ +++FRN ++ P N ++G N GKT++LE+I L R+ R+++ + Sbjct: 1 MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ RL E E + +G + I + +E + L P Sbjct: 61 IREGQDFCKAECRLNTEP-EMVLSAVIHGKG-KTLMIHQKPVSRSSEFIGKLNAVLFAPS 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 L PK RR +D P + A S + +LLK+RN+ L++ L D+ Sbjct: 119 DLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLEVLDQ 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE-------YAE 232 ++I I R ++ A + ++ T E + + ++TE + Sbjct: 179 QMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYHTITEQTEPDAMREEISR 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N ERDR L T+ G H+ DL + +G V S+GQ ++++ A +L+ +F+ Sbjct: 239 KLLENRERDRILKTTSSGVHRDDLSFQLNGRDVLSYASQGQRRMIVLAWKLSLIDFIAER 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + L+DD SELD ++R L S + + Q F++ ++ K+ ++ Sbjct: 299 LNELPVLLLDDVLSELDQQKRVNLFSLISP-EIQTFITTTEIAELLPFLSRKPKIAEIDS 357 Query: 353 GKI 355 G+I Sbjct: 358 GQI 360 >UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=Fusobacteriaceae RepID=C7NC99_LEPBD Length = 362 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 83/369 (22%), Positives = 168/369 (45%), Gaps = 20/369 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ +FR + L FN + G NG GKTS++EA++ L G++FR+ ++ + Sbjct: 1 MYLDQISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ ++ G+ + ++ I + ID +K L+ + PE Sbjct: 61 RKYNLNRLIVFGKYRHKDLSENIIAIDVNEDKKDFYIDREK-NKYINYVGLLNIISFIPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 L+ G P RR F ++ + + + N +++LK RN +++ E++ + +++ Sbjct: 120 DIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKETEYAEVLER 236 + I I R E+ ++ + ++ E L + G + E + E L+ Sbjct: 180 KFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDENSELKLKYDCFLG-DVEKKTREELKE 238 Query: 237 NFE--------RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 FE R++ L Y+ GP K D +G + S+G+ K ++ +L++++ + Sbjct: 239 KFEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAKAYSSQGEKKSIIFSLKISEIDI 298 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 L +E ++++DD AS D+ R+ + S + Q F+++ + K F Sbjct: 299 LIKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTEDLGI------EGKKF 352 Query: 349 TVEKGKITD 357 VEKGKI + Sbjct: 353 IVEKGKIIN 361 >UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746B3D Length = 356 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 142/360 (39%), Gaps = 10/360 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +RDFR A LAL P LVG NG GKTS+LEA L ++ R+ + Sbjct: 1 MLLEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAE-LAHLMPMQLITP 119 IR + V G + G + A +V ++ + + + L + + Sbjct: 61 IRFGAQTCVTEGVVGGRKLRVA-----QSPTARRVAVNDSVCPRAGDYLIQSARVVWMDH 115 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--RYEQLRPW 177 L GG ++RR +LD+ P + A + +R L+ RN L++ + Q+ + Sbjct: 116 SDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAVISWRQVDAY 175 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 + L I R E + + + + L Sbjct: 176 GRILAEHGAAIRRCRDELVQRVQEPVTEAHLGLSAGVEPGAVAYVPGYPGEDLEAALMEV 235 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 + + +L T G H+ DL + G P S GQ + L AL+LAQ L G Sbjct: 236 RDSEARLRTTQVGVHRDDLALTIHGRPAGAFASEGQQRTLCLALKLAQARVLEEAQGEPP 295 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 L LIDD ELD RR L + L Q ++ + + + ++ V+ G++ + Sbjct: 296 LLLIDDIFGELDKTRRQALLAYL-PAHGQKIITTTFTDWASE-TGVGGMVYEVQDGRLKE 353 >UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8K6_ATOPD Length = 363 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 70/357 (19%), Positives = 144/357 (40%), Gaps = 14/357 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FR + ++ LS VG N +GKT+ +EA+ L G +FR +++ Sbjct: 4 KVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQLL 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + L G+ R+ ++ + +G A+++ + L P+ Sbjct: 64 LTDTSEAKIEISLTGDGRKLENTCIITER-RRQFSKNGKKCQ-AADISGTLMSILFNPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 +++ GG YRR D +F +S + ++QRN L+ E L WD Sbjct: 122 LSMIKGGASYRREEFDDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLDAWDLS 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------EKETEY 230 L + R +A + ++ L ++ E ++ Sbjct: 182 LARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREEISDQF 241 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + L D + + GPH+ D+ +G + S+GQ++ ++ AL++A+ Sbjct: 242 LQALNEIRIDDIRRQQSTKGPHRDDVEFLIEGKEARNFGSQGQIRTVVLALKMAEVLLSE 301 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 G + L L+DD SELD++RR + Q ++ + + + E +++ Sbjct: 302 EILGEKPLLLLDDVMSELDEDRRKAIMEF-AFHDIQTVITTTNLGYFSEEILEKAQI 357 >UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K4_9ACTN Length = 382 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 70/378 (18%), Positives = 146/378 (38%), Gaps = 31/378 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L ++RN + ++L L G+N GKT+ +EA+ + G +FR + ++I Sbjct: 5 LHELTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIY 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H + A L + E + + ++ D V+ L +MP L +P+ Sbjct: 65 HNENAARLCAVYEDELHSVELACNISTHSKTYLKNDKK--CSVSTLCSVMPSVLFSPDDL 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDKEL 181 + +YRR+ +D G+ R L+QRN L+ ++ + L W L Sbjct: 123 LFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDILHAWSVSL 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------------- 224 + + R + + + + P L ++ Sbjct: 183 AHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIKDLEHKVEEPYMYT 242 Query: 225 ----------EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 + Y + + + + + T GP + D+ +G P S+GQ Sbjct: 243 PQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDDIEFYINGIPARTYASQGQQ 302 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + ++ A +LA+ F+ +G+ + L+DD SELD+ RR + ++ Q ++ + Sbjct: 303 RSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GIQTIITTTNL 361 Query: 335 EHVIDMSDENSKMFTVEK 352 + + +++ + + Sbjct: 362 SYFTKDILDRAQVVNMNE 379 >UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax=Bacteroidales RepID=RECF_AZOPC Length = 366 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 164/365 (44%), Gaps = 9/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +F+NIE L+ SP N+L+G NG GKT++L+A+Y L + +L ++ Sbjct: 1 MIIEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKNHTNLTDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + ++ VLH + ++ I + + + + K++E L+P +++P Sbjct: 61 INYNKDFAVLHAFYKDKDNIEEIYCGIKLKQRKIFKRNKKEYKKLSEHIGLIPTVMVSPN 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 ++ G RR F D + + + L+QRN LR E+ W Sbjct: 121 DTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGEEFEIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEVLER 236 ++++ E I R ++ + + ++ + + + + E+L Sbjct: 181 EEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKNETIDLEYVSHLDDHSLF-ELLYE 239 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 ERD+ L +T+ G HK D + + S+GQ K + AL+LAQ FL ++ Sbjct: 240 KRERDKILGFTSTGIHKDDFNFLLNNFLIRKIGSQGQNKTYLIALKLAQFSFLVQKGLSI 299 Query: 297 CLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEHVIDMS---DENSKMFTVEK 352 + L+DD +LD +R + L T Q+F++ + +H+ ++ K+F V Sbjct: 300 PILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDTNRKHLDNILTKMQHAYKLFYVSN 359 Query: 353 GKITD 357 G I + Sbjct: 360 GTIRE 364 >UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S6_9DELT Length = 406 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 101/400 (25%), Positives = 148/400 (37%), Gaps = 45/400 (11%) Query: 1 MSLTRLLIRDFRNIETA---------DLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRA 51 M L RL + DFRN A +LA F L G NG+GKT+VLEA+Y R+ Sbjct: 1 MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60 Query: 52 FRSLQIGRVIRHEQEAFVLHGRLQGEERETA--IGLTKDKQ---GDSKVRIDGTDGHKVA 106 FR+ ++R Q+ + ++ + + D+ R+DG Sbjct: 61 FRTTDAKALLRRGQDHARVELEAFDDDLGLDTCLEVRIDRGARSTRRSARVDGKLVRSAT 120 Query: 107 ELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR 166 + + L TPE +L G P RR FLD F + ++LL+ RN L+ Sbjct: 121 DFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRSRNRVLK 180 Query: 167 -------QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS---- 215 + R L +D L + QI R + A Sbjct: 181 TDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDRRDPGEG 240 Query: 216 --------------LTFSFQRGWEKETE------YAEVLERNFERDRQLTYTAHGPHKAD 255 LT Q E A+ L RD T GPH D Sbjct: 241 GAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTVGPHLDD 300 Query: 256 LRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGL 315 L +R DG D S+GQ + L+ A ++A+ + GRR L+DD +SELD R Sbjct: 301 LHVRLDGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSELDPRRSAR 360 Query: 316 LASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L L Q ++ A ++ + + V G+I Sbjct: 361 LFETLAQEVGQCVLTTTDARYIELGAGVERRDLQVRDGQI 400 >UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAS2_9ACTO Length = 398 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 99/398 (24%), Positives = 166/398 (41%), Gaps = 46/398 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L G LVGANG GKT+++EA+ L + R G + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 61 IR---HEQEAF----VLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 +R E EA V+ R+ RE I L + ++ RI+ K E+ ++ Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVTFGREQVIELEIVRGKANRARINRAQV-KPREILGIVR 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR------- 166 + PE +L+ G P RR+FLD P + S+ R+ +QR A ++ Sbjct: 120 TVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASLR 179 Query: 167 --QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAA-------DMADTCKQFLPEFSLT 217 Q L WD++ L+ +I+ RA + + D+AD+ + F + Sbjct: 180 RGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDAS 239 Query: 218 FSFQRGWEKE--------------TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGA 263 G + + L E++ + G H+ DL + Sbjct: 240 VDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLALSLGAM 299 Query: 264 PVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKAT 323 PV+ S G+ + ALRL E L+ G + ++DD +ELD RR LA+ L + Sbjct: 300 PVKGYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLAA-LASK 357 Query: 324 QSQVFVSAISAEHVIDMSDENSKMFTV----EKGKITD 357 Q+ V+ A + D ++ V E+G + D Sbjct: 358 AEQIIVTCAVAGDLPASLDHHA--LHVRLDPERGTVID 393 >UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3C8_SPHTD Length = 412 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 151/399 (37%), Gaps = 44/399 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + +FR+ + L + G N GKTS+LEA+Y L R+ R+ Sbjct: 1 MILTTLQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERET 60 Query: 61 IRHEQ-------EAFVLHGRLQGEERETAIGL------TKDKQGDSKVRIDGTDGHKVAE 107 I E + R++ ET + + + +V++DG + + Sbjct: 61 IHWESGVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRP-RRAID 119 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 + + L TP+ L+ G P RR +LD + + A RLL+QRN+ L++ Sbjct: 120 AVGALKVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKE 179 Query: 168 VTRY---------EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLT 217 + +Q+ WD E++ + R Y + A+ + E L Sbjct: 180 LGGRRPRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLG 239 Query: 218 FSFQRGWEKETEYAEV--------------------LERNFERDRQLTYTAHGPHKADLR 257 + E L R + + T GPH+ DL Sbjct: 240 LRYSTTVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLH 299 Query: 258 IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLA 317 G + SRGQ +L + A +LA+ + +G R + L+DD SELD E + L Sbjct: 300 FLLGGHELSAYGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERLL 359 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L + Q+ ++A + + + G + Sbjct: 360 AVLGSAGCQILITATDRALLDQPALAALPLVEARNGTLV 398 >UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML39_ANATD Length = 353 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 143/342 (41%), Gaps = 11/342 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FR + N +VG N SGKTS+LEA+Y G++F+S + Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFKS-RDIDA 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + F L + + E + DK D ++ I+ K++EL P+ Sbjct: 60 INFDSFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFVFFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P +S R L RNA L+ + + + +D + Sbjct: 120 ATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLKSYDKKDIIDVYDMQ 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLERN 237 + L I R E ++ + L + E EY + +++N Sbjct: 180 ISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSIAASTEKEYYKEIKKN 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 E+D L YT G H+ D I D P + S GQ+KL ++ LA + Sbjct: 240 IEKDLSLGYTTKGVHRDDFEILIDKKPAINFASEGQIKLAAVSVVLATSLLYSE-----P 294 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 + ++DD SELD +R L + Q Q FV++ V++ Sbjct: 295 VLILDDVFSELDSFKRKNLVKFIS--QYQSFVTSAEDLSVLE 334 >UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCN7_GARVA Length = 433 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 152/405 (37%), Gaps = 50/405 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++R+ + FR+ +PG N + G NG GKT+++EA+ G G + R+ + Sbjct: 1 MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 61 IRHEQEAFVLH----------------------GRLQGEERETAIGLTKDKQGDSKVRID 98 I+ E ++ L+ +T + +G ++ I+ Sbjct: 61 IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSNRAHIN 120 Query: 99 GTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLL 158 V ++ L+P+ TP L+ G P RR F+D P + K + Sbjct: 121 SGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHIS 180 Query: 159 KQRNAALRQVTRYEQ---------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQ 209 KQR A L+ + + L W + I ++ R E I + K Sbjct: 181 KQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKS 240 Query: 210 FLPEFSLTFSF-------------QRGWEKETEYAEVLERNFER----DRQLTYTAHGPH 252 F E + + E + E + +F+R + GPH Sbjct: 241 FTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLIGPH 300 Query: 253 KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDER 312 + D+ + +D S G+ + A ++A + L ++ + + ++DD ++LD+ R Sbjct: 301 RDDIDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENR 360 Query: 313 RGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 R + + Q QVF++ S + + + GK+ + Sbjct: 361 RIRILNF-ALNQGQVFITTSSLSDIPNKEYIKKTNL-INIGKLLE 403 >UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=Opitutaceae RepID=RECF_OPITP Length = 366 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 102/361 (28%), Positives = 161/361 (44%), Gaps = 12/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN+ A LA S FLVG NG GKT++LEA L R+FR+ + Sbjct: 1 MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+H Q + L E+ +T + + + G ++ D T ++A+ P + + Sbjct: 61 IQHGQHTGAISSELTHEQLGDTKLTIKLRRDG-KELWSDATRVTRLADHLGRFPTVVFSS 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWD 178 + L+ G P RR +LD + G+ A R L RNA L++ + +L ++ Sbjct: 120 QDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAELDAFE 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQF-----LPEFSLTFSFQRGWEKETEYAEV 233 ++L P A + R A + A +A + + L + + Sbjct: 180 QQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPSTEAWLAR 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 E + RD Q T GPH+ D G +D S GQ + L+ ALRLAQ E+ +S Sbjct: 240 FESSRGRDAQFRTTLVGPHRDDFSFVVRGTAAKDFASEGQQRSLVLALRLAQAEWGHEKS 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G R + L DD ELD RR + + +SQ+ + S + D ++F V+ G Sbjct: 300 GTRPVLLADDVLGELDPLRRRRFWASIDP-ESQILATGTS---LPDAELGEWQVFEVKSG 355 Query: 354 K 354 + Sbjct: 356 E 356 >UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR Length = 355 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 156/355 (43%), Gaps = 10/355 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L IR FRN S N L G NG GKT++LEA+Y LG+G +FR+ + Sbjct: 1 MILKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLITP 119 +++ + + L G + +E + Q KV ID + +L + + P Sbjct: 61 VKNGNDNYFLRGVFREDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVIFLP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L+ PK RR + + + TA +LLK RN L T+ + ++ Sbjct: 121 NDTDLVIAEPKLRRDYFNMLISTISLEYLTALIKYNKLLKMRNVCL--STKPNEAYIYNS 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQ-FLPEFSLTFSFQRGWEK---ETEYAEVLE 235 ++ L+ I+ +YS+ + M + K F E +Q E E EY + LE Sbjct: 179 DIAKLSIYIAGENKKYSSILEDKMNEIYKNIFNDENPYAIKYQSTIEDIFNENEYVKKLE 238 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ++ T G H+A+ + + + S+G+ ++ ++LA + L+ + Sbjct: 239 STLNEQIRMRTTYFGIHRAEYQFFYKESLSKKFSSQGEKRMFTLIMKLASEKILSEYRRK 298 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + LIDD ELD+ RR + +K QVF++ E V + EN K+F + Sbjct: 299 SPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF--ENGKVFDI 350 >UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=Zymomonas mobilis RepID=C8WEM6_ZYMMN Length = 376 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 92/375 (24%), Positives = 160/375 (42%), Gaps = 23/375 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + L G L G NG GKT++LEAI L GR FR + + Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 61 IRHEQEA-FVLHGRLQ-----GEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHLMP 113 +R E E F + +L G IG+ + +VR++G L+ + Sbjct: 61 VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVT-TSANALSEWLA 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE- 172 + +TP L G RR FLD P +S + ++QRN L Y+ Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179 Query: 173 -QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS---------FQR 222 L ++ + A I R + ++ ++A + L Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQEDGLFAKADLALEEGVDSRDLVTHN 239 Query: 223 GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMCA 280 E + +++ D + T G H+ADL++ A P S G+ K L+ Sbjct: 240 SEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQ-SSTGEQKALLLG 298 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 L LAQ +T ++G+ + L+D+ A+ LD RR +L L++ QV+++ + + Sbjct: 299 LVLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPS-LFET 357 Query: 341 SDENSKMFTVEKGKI 355 +++ + F ++KG+I Sbjct: 358 AEDAACYFQLDKGEI 372 >UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=Mobiluncus RepID=C2KT37_9ACTO Length = 436 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 151/403 (37%), Gaps = 57/403 (14%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + FR+ ++L PG N +GANG GKT+++EA+ L R+ + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 61 IRHEQE-----AFVLHGR----LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHL 111 I A ++ R + E R + + ++ ++ + +L Sbjct: 61 IFRGTPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAMLNRHKV-RPRDLVGH 119 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 + L PE L++G P RR+FLD P ++L + L+QR A LR V R Sbjct: 120 LSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARR 179 Query: 172 E------QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWE 225 QL WD L+PL ++ R + + + + Q + Sbjct: 180 HEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEA 239 Query: 226 K--------------------------------------ETEYAEVLERNFERDRQLTYT 247 ET+ L + + Sbjct: 240 TPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVN 299 Query: 248 AHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASE 307 G H+ DL PV+ S G+ ALRLA+ L + G + L+DD +E Sbjct: 300 LCGTHRDDLEFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAE 359 Query: 308 LDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 LD RR + ++A QV++++ + + D ++++F V Sbjct: 360 LDSHRRAAILGAIEAAD-QVWITSAVGTELPE--DLHAQVFRV 399 >UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=Deinococcus deserti VCD115 RepID=RECF_DEIDV Length = 363 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 139/335 (41%), Gaps = 13/335 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L L ++RN+ L+ G + G NG+GKT++LEA Y G + ++ +++ Sbjct: 5 QLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVT-RLEQLV 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP---MQLIT 118 + + + L+ + + + G ++++DG A +P I Sbjct: 64 QSGEGEAYVRADLESGGSLSIQEVGLGR-GRRQLKVDGVRVR-----AGDLPRGSAVWIR 117 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE L+ G P RR FLD + + R + QRNAALR + WD Sbjct: 118 PEDSELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRSGEEWAM-HVWD 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 L+ L I +R ++ A+ + L ET YA L Sbjct: 177 DALVKLGSDIMLFRRRALTRLSELAAEANEALGSRKPLVLGLSESTTPET-YAHDLRSRR 235 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 + TA GPH+ DL + P + SRG+ + + ALR A+ E L G + + Sbjct: 236 AEELARGSTATGPHRDDLTMTLGDFPATEYASRGEGRTIALALRRAELELLAERFGEKPV 295 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAIS 333 LIDDF++ELD RR L L A+ Q V+ Sbjct: 296 LLIDDFSAELDPTRRAFLLD-LAASVPQAIVTGTE 329 >UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW63_STRM9 Length = 358 Score = 279 bits (715), Expect = 1e-73, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 158/366 (43%), Gaps = 22/366 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + + FRN+ + LS GFN + G N GKTS +EAIY GR+FR+ + +I+ Sbjct: 2 IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 ++ + +L +I L K+ + K +G V + + PE Sbjct: 62 YDSNDAKIFVKLDNTS-NYSINLFKN---EKKYFKNGEKIKYV-DYIGDILAVSFIPEDV 116 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDKEL 181 L+ G P RR F ++ + + +++LK RN L+ E+L ++++ Sbjct: 117 ELVMGNPSIRRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKEELYLIYNEKY 176 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKETEYAE------ 232 I + +I R EY + + K F L + + ++ E Sbjct: 177 IDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKIDDVSDIEENKKIIE 236 Query: 233 -VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 +L+ D Q+ Y+ +G HK + +G S+G+ K ++ L++++ E + + Sbjct: 237 KLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKNARHYSSQGEKKSIVFILKISEIELIEK 296 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + ++ ++L+DD S D+ R+ + + Q F+++ ++ K F V+ Sbjct: 297 KENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTEDLKIV------GKKFDVD 350 Query: 352 KGKITD 357 +G I + Sbjct: 351 RGIINE 356 >UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax=Alphaproteobacteria RepID=RECF_BRUA2 Length = 384 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 146/370 (39%), Gaps = 17/370 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 S+ RL + +FRN L L PG L G NGSGKT+++EAI L GR R V Sbjct: 15 SIRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYDDVA 74 Query: 62 RHEQEA-FVLHGRLQ---GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 R E F +H L + E G +G KVRI+ +L + + Sbjct: 75 RANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRI-AASADDLLDYARILWV 133 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRP 176 P L GG RR FLD + + ++ ++ RN L + +Q L Sbjct: 134 VPSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQWLDA 193 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQ---------FLPEFSLTFSFQRGWEKE 227 + ++ L I+ RA+ IAA + + + + E Sbjct: 194 IENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAALDLE 253 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQG 286 ++ L RDR T GPH+ DL ++ + S G+ K L+ L LA Sbjct: 254 EDFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLILAHA 313 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 SG + L+D+ A+ LD RR L L Q F++ + D +++ Sbjct: 314 RLTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDR-ALFDALAGDAQ 372 Query: 347 MFTVEKGKIT 356 F V G++T Sbjct: 373 FFNVSAGQLT 382 >UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK35_9FIRM Length = 366 Score = 279 bits (713), Expect = 2e-73, Method: Composition-based stats. Identities = 79/355 (22%), Positives = 145/355 (40%), Gaps = 13/355 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +FRN++ N VG NG GKT+VLEAIY +FR + Sbjct: 1 MIVEKIHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDF 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + + ++ + E I +ID V EL + P+ Sbjct: 61 ISFGENFTKVDTFVREKGFENKISFLYTDDKKKVFKIDDIKIKSVNELYDFSNVIGFFPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----QVTRYEQLRP 176 ++ P +RR F D G+ + + ++ +RN L+ +++ Sbjct: 121 ELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYKQEMNA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-----EFSLTFSFQRGWEKE--TE 229 K+L L +IS R + I ++ +Q E+ S + E E E Sbjct: 181 LTKKLALLCYEISMERKKLIDLINKEVNFIHQQLSGETLYIEYESILSNHKRSENECLKE 240 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E ++++ D + T+ G HK + + +G + S+GQ + ++ +++ Q Sbjct: 241 ILENFSKSYKIDSENKITSFGIHKENFKFILNGNDAKSFSSQGQKRNIIITIKMCQKNIF 300 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 G + + L+DD SELD++RR + L T +QVF++ V + N Sbjct: 301 EEYKGVKPIILLDDLFSELDEDRRYEILEYL--TDNQVFITTTDKSFVNRYKNIN 353 >UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=Erythrobacter RepID=Q2N8V1_ERYLH Length = 361 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 91/363 (25%), Positives = 155/363 (42%), Gaps = 13/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + + RN L + FN LVG NG+GKT+VLEAI L GR R + + Sbjct: 1 MALDRITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDI 60 Query: 61 IRH-EQEAFVLHGRLQGEERETAIGLT----KDKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 R F + L + + L + G +VR++G + V+ L + + Sbjct: 61 ARAGGGGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIG 119 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--Q 173 +TP + G RR F+D +P S + +L++RN L + Sbjct: 120 WLTPAMDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTW 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEV 233 L + ++ ++ RA + +A + L + +E+E Sbjct: 180 LDGIEAQMAKHGSALAQSRARLVGVLVETLASHPDEPFARPLLAILTESPFEEEA-LRVA 238 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N RDR+ T GPH+ DL + G + S G+ K ++ A+ LA GE Sbjct: 239 LRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLAHGEL--AA 296 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 GR + L+D+ A+ +D RR L RL+ T +QV+++ + + + ++ V Sbjct: 297 RGRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPFAAI-EAEAAVWRVSG 355 Query: 353 GKI 355 G + Sbjct: 356 GSL 358 >UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=Meiothermus RepID=C1XG19_MEIRU Length = 357 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 23/365 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL ++FRN+ T A PG +VG N GKT++LEAI L G R+ + Sbjct: 1 MRLLRLRQKNFRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIE-LALGGELRNG-LAER 58 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I Q LH ++ + + + + ++G + R++ + ELA L L+ P+ Sbjct: 59 IAFGQGEAWLHAEIETQFGNSRLEVKLSREG-REHRLNEAPA-SLRELAQLPGAVLLGPD 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 L+ G P+ RR FLD + + S R L+QRNA L+ R Sbjct: 117 DLELVLGPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQGEGA 176 Query: 171 ----YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE 225 + W+ EL+ +I + R A + + ++ P E +L S + Sbjct: 177 PSSTRASIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPGELNLELSETTDPD 236 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + LE N + D Q T+ GPH+ DL I +G SRG+ + + ALRLA+ Sbjct: 237 R---FLQTLEDNLQDDLQRGATSVGPHRDDLVILLEGREAARFGSRGECRSIALALRLAE 293 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 L + L L+D++ SELD+ RRG L + ++ Q ++ + + + + Sbjct: 294 HRLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSLP-QAILAGLETPGTGAVIEIEA 352 Query: 346 KMFTV 350 +++V Sbjct: 353 GVWSV 357 >UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=Chloroflexi (class) RepID=RECF_ROSCS Length = 394 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 161/392 (41%), Gaps = 38/392 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +RDFRN E DL L PG L G N +GKT+VLEAIY L R+ R+ + Sbjct: 1 MYVTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADREL 60 Query: 61 IRHEQE-------AFVLHGRLQGEERETAIGLTKDKQGD-----------SKVRIDGTDG 102 +R E + L + + + + ++ + VRID Sbjct: 61 VRFEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAV 120 Query: 103 HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRN 162 + +L + + L TP L+ G P RR +LD + + ++ +++++QRN Sbjct: 121 RAL-DLVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRN 179 Query: 163 AALRQVTR--------YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-E 213 + LR ++L WD+EL + R + A + + Sbjct: 180 SLLRAWREGRRPLRYADDELAFWDRELAMAGAYLLRERLHAVVDLNALAGPLYCRMSGGD 239 Query: 214 FSLTFSFQRGWE----------KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGA 263 LT ++Q E + L R + + T GPH+ DL I G Sbjct: 240 TPLTLAYQSSVAGIDSVTDSRAIEQAFLAHLTRLRDDEIGRGQTLIGPHRDDLLIAVGGV 299 Query: 264 PVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKAT 323 P+ SRGQ + +L+L + + + +G + L+DD SELD ERR + L+ Sbjct: 300 PIGAYGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRSHVQDILERP 359 Query: 324 QSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 Q V+A + ++ + VE G + Sbjct: 360 DQQTIVTATGTDDFDLKFLTRARRWRVESGHL 391 >UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax=Rhodobacterales RepID=Q28WH8_JANSC Length = 375 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 88/352 (25%), Positives = 151/352 (42%), Gaps = 6/352 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 ++ L + FR+ A + L L G NG+GKT+++EA+ L GR R +I Sbjct: 15 FVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAAEEII 74 Query: 62 RH-EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R E + + + G I LT + ++DG ++A LA L+ + + P Sbjct: 75 RRPEAIGWKVSAEISGPSINHDITLTAEPGQPRTTQVDGKTAPQIA-LARLLRIVWLVPS 133 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPWDK 179 L + G + RR FLD P A ++ +++RN LR R R + Sbjct: 134 QDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPAWYRALEA 193 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 ++ A +I R + I+A + P L + + ++ + E + Sbjct: 194 QMADAAVRIVNGRDDALTRISAA-QNGAATAFPAADLGIETEHPCQTVDDFIQAFEGSRP 252 Query: 240 RDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 RD T GPH+AD+ I D S G+ K L+ +L L+ L E+G L Sbjct: 253 RDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLILSNARALKAETGTAPL 312 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 L+D+ A+ LD RR L + A ++Q +++ E ++ D ++ F + Sbjct: 313 VLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAELGDR-AQHFEI 363 >UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ54_9GAMM Length = 390 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 31/381 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L I FRN+ T +L S N +G NGSGKTS+LE+IY L G++FR Q Sbjct: 1 MQIIQLAIHHFRNLHTIELQPSS-CNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + RL + + + K + +++R++G + LA L+P L+ P Sbjct: 60 IEHGFSDTTVFARLNHGQ---TVAIAKSQDATTQLRLNGQSLVTQSPLAQLLPTLLLEPV 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--------RYE 172 L G + RR LDW FH E F W +RLLKQRN+ L+Q + Sbjct: 117 SLAQLEDGSQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLTSLQQH 176 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKETEY 230 +L WD +L AE+I RA+ ++FLP++ L + G++ E Sbjct: 177 ELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQKFLPQYAEKLRLRYTPGFDTEAGL 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRAD-------------GAPVEDTLSRGQLKLL 277 A L D +L YT G H++D+ + D D LSRG+ KLL Sbjct: 237 AITLANRLASDIELGYTRMGCHRSDINVVLDLVHTDAAGHKHKQTLLATDMLSRGEKKLL 296 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAIS---A 334 + ALRL+Q L + + L L+DD +ELD++ LL + LK SQ+F+++++ Sbjct: 297 VMALRLSQLPLLNQV-DKVPLVLVDDITAELDNDALMLLLTGLKQVNSQLFITSLTQDIV 355 Query: 335 EHVIDMSDENSKMFTVEKGKI 355 E + + +N K+F VE+G I Sbjct: 356 ESIQKIWQDNIKLFQVEQGSI 376 >UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=Deinococcus RepID=RECF_DEIGD Length = 358 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 144/356 (40%), Gaps = 13/356 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L+ L ++RN+ L G + G NG+GKT++LEA Y G + ++ ++I Sbjct: 5 QLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVT-RLEQLI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + + +Q + +I +G +++DG I PE Sbjct: 64 QSGEREAYVRADVQ-QGGSLSIQEVGLGRGRRHLKVDGVRAKTGDLPRG--SAVWIRPED 120 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L+ G P RRA+LD + + +R + QRNAAL+ + WD L Sbjct: 121 SELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAGEDWAM-HVWDDAL 179 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + L I +R + + Q LT + ET YA L + Sbjct: 180 VKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTLSESTTPET-YAHDLAARRAEE 238 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 T GPH+ DL + P + SRG+ + + ALR A+ E L + G + + LI Sbjct: 239 LSRGATVTGPHRDDLILTLGELPASEYASRGEGRTVALALRCAELELLAEKFGEKPVLLI 298 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DDF +ELD RRG L L A+ Q V+ ++ G+ T+ Sbjct: 299 DDFTAELDPGRRGFLLD-LAASVPQAIVTGTERAPGAALTLRAH------AGRFTE 347 >UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPF6_AKKM8 Length = 351 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 88/356 (24%), Positives = 161/356 (45%), Gaps = 12/356 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++RL + DFR + + ++G N GKTS+LEA+ L ++ R+ + G ++ Sbjct: 2 ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAE-LAHLMPMQLITPEG 121 H +++F + G L G+ R +R++G LA P+ + + Sbjct: 62 HGKQSFGIRGELPGQIRRI-----LWAPDAPDLRVNGEPRKDQRSYLADSYPVVWMGNDD 116 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 +L+ G RR ++D+ PG+ A + +R LK RN L+ R + QL + ++ Sbjct: 117 LSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHRHRDKLQLDAYTRQ 176 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLERNFE 239 L ++ RA A +A +A + + ++ +++ +E + E L + + Sbjct: 177 LALHGTELRNLRANLLALLAPHIALAYRNIGGRQEQVSIAYRAS--EEGDLYERLCASMD 234 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD + T +GPH+ DL I +G S GQ + +++LAQ LT E+G ++ Sbjct: 235 RDIRYGQTQNGPHRDDLDITLNGRNAAQFASEGQQRTTAISMKLAQSSLLTEETGHTPIH 294 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LIDD ELD RR L +Q ++ + + + F +E G + Sbjct: 295 LIDDVFGELDPTRRIAFLQSL-PADAQSLITTTHLDWLHNAPCPLPA-FRLEDGAL 348 >UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax=Cyanobacteria RepID=RECF_TRIEI Length = 390 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 154/386 (39%), Gaps = 31/386 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN + L+G N GK+++LE++ L ++ R+++ + Sbjct: 1 MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++A + L+ + + LT QG V ++G + + ++ + + Sbjct: 61 ILDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSL 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 L+ GGP+ RR +LD EP + ++L+QRNA L+++ + Sbjct: 121 DLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETTGS 180 Query: 171 -----YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL--------- 216 ++L WD +L ++ R +A + + Sbjct: 181 SPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV 240 Query: 217 -----TFSFQRGWE-KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLS 270 Q E + E ++ ++ T GPH+ D+ + P S Sbjct: 241 IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGS 300 Query: 271 RGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 +GQ + L+ AL+LA+ + + L L+DD +ELD R+ L + + Q ++ Sbjct: 301 QGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-RFQTLIT 359 Query: 331 AISAEHVIDMSDENSKMFTVEKGKIT 356 +++++ +V+ G I+ Sbjct: 360 TTHLGCFDGQWLQDTQILSVKSGNIS 385 >UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRU4_HIRBI Length = 396 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 156/374 (41%), Gaps = 23/374 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + +FRN + L + L GANG+GKT++LEA+ LG G+ R+ + ++R Sbjct: 22 IQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASLPSLVR 81 Query: 63 HEQEAFVLHGRL-------QGEERETAIGLTKDKQGDSK--VRIDGTDGHKVAELAHLMP 113 E V+ G G +R+ ++GL G ++ ++D LA L+ Sbjct: 82 VEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPV-SQTNLAELVR 140 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYE 172 + +TP + G RR F D + P +A + ++ +++RNA Q Sbjct: 141 VVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQGRMDAS 200 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT---------FSFQRG 223 L + L I+ RA I A + + P+ L+ Sbjct: 201 WLDALEARLAEAGAAIAVNRATALKRIQAAIDARPEGHFPKADLSIAGKFEAMALQGDSQ 260 Query: 224 WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALR 282 E ++ L+ RD T G H++DL++ + S G+ K L+ + Sbjct: 261 AAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKALLMGMI 320 Query: 283 LAQGE-FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 LA + L + L L+D+ A+ LD RR L L A Q +++ A + D Sbjct: 321 LANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDA-ALFDAF 379 Query: 342 DENSKMFTVEKGKI 355 + ++ F VE G++ Sbjct: 380 GDRAQRFCVENGQV 393 >UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6J7_GEMAT Length = 376 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 84/375 (22%), Positives = 143/375 (38%), Gaps = 21/375 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L +L +R++RN + DL + G ++G NG GKT++LEA+ LG R+FR + VIR Sbjct: 2 LAQLAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIR 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 AF + L + + ++ + +DG + ++ +P +P Sbjct: 62 FGAPAFHVRATLHAPAAWHTVSVGYERSSKRKRATLDGVEQPRLTSALGALPSVEFSPAD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--------Q 173 L+ GP RR +LD + P + A + L +RNA L+ R + Sbjct: 122 VALVASGPGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQEAR 181 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF------------Q 221 + W+ L I R + A A+ C + Sbjct: 182 VSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGGDTRSDALT 241 Query: 222 RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 ++ + + + T GP + DL++ G + S GQ + AL Sbjct: 242 DPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELRTFGSAGQQRSAAIAL 301 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 RL + L G L L+DD +ELD R + L A + + A+ E I + Sbjct: 302 RLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLLAVPREQDIPAA 361 Query: 342 DENSKMFTVEKGKIT 356 T+ G ++ Sbjct: 362 YTRLARRTMRDGVLS 376 >UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=Treponema denticola RepID=Q73R61_TREDE Length = 360 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 6/359 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +FRN+E A + +S FLVG NG GKT+ LEA+Y +G +FR+ + ++ Sbjct: 1 MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +++ F + + + I + + ++ + EL +P L Sbjct: 61 CTKDEKEFSIRALYKESDNISHTISIII-QDKKKDIQKNFKKIKNSKELISTIPCILFHG 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + G P +R F+D F + LK RN L Q + L D+ Sbjct: 120 DDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQ-KKASLLDSIDE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--WEKETEYAEVLERN 237 LA I+ R A + ++ + ++ E E + +L Sbjct: 179 IFASLALLITNERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSVKVESEEDLLILLAEK 238 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 + D ++ GPH+ + D P + S GQ +L+ LR+ Q + + ++GR+ Sbjct: 239 RQNDLIDRTSSTGPHRDRIHFIKDKKPFTERASNGQRRLISLVLRMIQAKIYSEKTGRKP 298 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 ++L+DD ELD E+R L + Q+F + + E + EN+K+F VE GK + Sbjct: 299 IFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENTKIFFVEDGKFS 356 >UniRef50_B0VFV3 Putative putative DNA repair and genetic recombination (RecF-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV3_9BACT Length = 358 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 148/338 (43%), Gaps = 9/338 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L ++ + +FR+ + +P ++G NG GKT++LEAI G++ R + Sbjct: 1 MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F + +++ + L+ ++ID +++ L ++ + P Sbjct: 61 LNFGGQFFRVQSLFISDQQTPKKVSLSY-ADQHKLLKIDELPIRQLSSLFEVVKVIYCAP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 E L++G P++RR + D P + + +++QRNA L++ ++ W+ Sbjct: 120 EDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAEITSWNL 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE-----KETEYAEV 233 ++ +R Y + +T K P +++ ++ + E + Sbjct: 180 SFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKLPLESSPEEIIKH 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L ER++ L + G H D + G + S+GQ ++ + L+L Q + + + Sbjct: 240 LATIEEREKLLQRSLVGAHLDDYEFKLKGRKMLTYASQGQKRIAVIILKLIQARLIEKVT 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 G + + L DD +ELD + + + + QVF+++ Sbjct: 300 GIKPIMLFDDIFAELDTFHSQQIRNCINN-RYQVFIAS 336 >UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL06_9ACTO Length = 453 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 147/398 (36%), Gaps = 48/398 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ E A +AL PG LVG NG GKT+++EA+ L + R + Sbjct: 1 MYLSDLALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R A V+ R+ T + + ++ RI+ + E+ + L PE Sbjct: 61 VRQGATAAVVQARVVRSSAPTTVEVEIYSGRANRARINRG-LVRPPEIVGTVRSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV---------TRY 171 L++G P RR+FLD P S R +QR A L+ Sbjct: 120 DLELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGGSADA 179 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQR-------- 222 L WD +L L +I+ RAE A + + + + +++ Sbjct: 180 AALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAKVSGGRGPAEIAYRASAGRLTER 239 Query: 223 ------GWEKETEYAEVLERNFERDRQL--------------TYTAHGPHKADLRIRADG 262 G + + E L + +L GPH+ +L + Sbjct: 240 ANGAGGGPDFDEGTQEELRDVELNEIRLISAMAERREEEIRRGVNLVGPHRDELELALGT 299 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLT-RESGRR-----CLYLIDDFASELDDERRGLL 316 P S G+ AL+LA L ESG + ++DD +EL D RR Sbjct: 300 LPARGYASHGESWSYALALKLASWRVLCGDESGEWAEGGEPVLILDDVFAEL-DARRRDR 358 Query: 317 ASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 +R+ Q V+A + + TV G Sbjct: 359 LARIVEEAEQAIVTAAVGSELPAELG--GRRLTVTLGN 394 >UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=Magnetococcus sp. MC-1 RepID=RECF_MAGSM Length = 382 Score = 271 bits (693), Expect = 3e-71, Method: Composition-based stats. Identities = 105/372 (28%), Positives = 168/372 (45%), Gaps = 22/372 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +RDFRNI A+L PG N + G NG GK+++LEAI L GR+FR + Sbjct: 1 MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R+ Q F L G + + + G V+I+G + L + ++TP+ Sbjct: 61 RRYGQPWFHLRGETTARDLGHRLEF-FGQAGRQAVKINGKSASAASALGQALAAVIVTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCF-----HNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQ 173 L+ GP RR F+DW F + ++ LK RN L+ +V E Sbjct: 120 TLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVEAGEW 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK------- 226 L W+ +L L +++ R + + + + LT + ++ Sbjct: 180 L-AWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTHWAE 238 Query: 227 -----ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 + Y +L N +R+ TA GPH+ DL +R DG + S+GQ K AL Sbjct: 239 DESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHALAQFGSQGQQKRAALAL 298 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LA+ + L + G L+++DD A+ELD + L L Q+FV++ A+ + S Sbjct: 299 KLAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVASCRAQTIP-WS 357 Query: 342 DENSKMFTVEKG 353 + F V++G Sbjct: 358 GLAPQRFYVDQG 369 >UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B5YFF1_DICT6 Length = 359 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 91/368 (24%), Positives = 163/368 (44%), Gaps = 24/368 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN++ +L N G N GKT++LE+IY L G++FR+ + Sbjct: 1 MRLIDLRVVNFRNLKNLNLNFFD-VNIFYGENAQGKTNILESIYFLFSGKSFRTKNEREI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR +E+F L G + + + + + + + K++I+ + + ++ L P+ L + E Sbjct: 60 IRWGEESFYLRGDVNWQNQNLVLE-SALSELEKKIKINQKNLKRYRDMVFLFPIILFSQE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 GP RR L+ + A S + L QRN L+ + W+ Sbjct: 119 EIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRD---VSVWNST 175 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG---WEKETEYAE----V 233 LI L I R I + + + + L + L + + E E A+ + Sbjct: 176 LIKLGSYILFQRLSIVEEIKSKVKEVSNKLLEKNFLEIEYISTVPLGDSEEEIAKNFEVM 235 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRA--DG--APVEDTLSRGQLKLLMCALRLAQGEFL 289 L+ +++ YT GPH+ D+ +R D + S G+ KL +LAQ E L Sbjct: 236 LKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEKKLGYIIWKLAQVEIL 295 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA-ISAEHVIDMSDENSKMF 348 + + + + LIDD +LD+ ++ + +K Q+F++ I E + D F Sbjct: 296 SEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTTPIKIEFLRDFPH-----F 348 Query: 349 TVEKGKIT 356 V+ G++T Sbjct: 349 LVKNGEVT 356 >UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=Borrelia hermsii DAH RepID=B2S0E1_BORHD Length = 355 Score = 270 bits (690), Expect = 7e-71, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 140/356 (39%), Gaps = 7/356 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + ++ +F+NI+ + + G NGSGKT++L+AIY L +F +I Sbjct: 2 IKKIEFFNFKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELIT 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + + F L + E++ I L+ + G +++++ + +L +P + + Sbjct: 62 YGKTEFYLKCFYKTREKDAEISLSF-RNGKKEIKVNNSLIKDRKDLILNIPAIVFSNYDT 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G P +R F D + + +R+LKQRN L+Q R + L+ +++ + Sbjct: 121 DFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQGNR-DLLKVYNEAFV 179 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE--KETEYAEVLERNFE 239 A +I R + ++L + E+ +L + Sbjct: 180 DYALEIIRMRENFIKHFYEFFKYYYSLIFDVSYNLEIKYLPSVAYCGRDEFLHLLFLKEK 239 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 + T GPH+ I + S G+ + L RL Q + G + Sbjct: 240 DEFLNESTLIGPHRDLYEILSGERVFTHHSSTGETRALALIYRLVQVIIFNKRFGIAPIL 299 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L DD ELD RR + L SQ F + + E N ++ V+ GKI Sbjct: 300 LFDDVFLELDSTRRKRVFDIL-PKDSQCFFTFVD-ECYDIKQKSNFIVYKVKNGKI 353 >UniRef50_UPI0001C311AF DNA replication and repair protein RecF n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AF Length = 370 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 150/361 (41%), Gaps = 7/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL +R+FR+ TA++ L G + G NG+GKT++L+A+Y GR+ R+ + Sbjct: 1 MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + + ++ + + + ++ DG ++ ++ + + P+ Sbjct: 61 VRFGEQVTRVVVMTEADDGAHELSVAFESGQPKRLMADGVRVERLLDVPGRPLVSVFLPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ----VTRYEQLRP 176 L+ G P RRA +D P + L QRNA + + L Sbjct: 121 RLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAASLPA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET--EYAEVL 234 WD+EL + RA + + + +++ E L Sbjct: 181 WDRELARHGVALMADRAAAIESVQTRFGTIAGELGLDGDPAVAYRPRSRAADAGGLEEEL 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 D + +T HGPH+ DL + + + S+GQ +L + AL LA+ E + Sbjct: 241 AERHASDLERGFTQHGPHRDDLALTRERRELRAYGSQGQQRLTLLALLLAEREAIAATRD 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD ERRG L L+ Q ++ EHV + +V G Sbjct: 301 AVPVMLLDDVMSELDRERRGRLVELLRGVG-QSVITTTDLEHVPGAEGADVTRLSVRDGV 359 Query: 355 I 355 + Sbjct: 360 V 360 >UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5A3_9GAMM Length = 325 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 103/314 (32%), Positives = 160/314 (50%), Gaps = 7/314 (2%) Query: 48 HGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAE 107 GR+FRS + +++ +Q+ + R +T IGL D Q +R++ ++++ Sbjct: 1 MGRSFRSRALKHLVKKQQQRLTVFAR---SMDQTPIGLQYDLQSGLLIRLNNAPLKRLSD 57 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 LA +P+Q I GPKYRR +DWG FH E F W + K+ L+QRNAA+R+ Sbjct: 58 LAAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNAAIRK 117 Query: 168 VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF---SLTFSFQRGW 224 ++ WD LI +I+ +R Y + + +Q PE S +Q+GW Sbjct: 118 YKPCNEIALWDTHLIKHGMKITEFRQGYLQQLVKEFLPLFRQLCPELETASFVLRYQQGW 177 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 KET++A+ L N ERDR L YT G H AD ++ D + LSRGQ KL AL +A Sbjct: 178 NKETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGDPYEMLSRGQQKLFFLALSMA 237 Query: 285 QGEFLTRESG-RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 Q + L + + LIDD +SELD + + L+ Q F+S+ + + + + Sbjct: 238 QIKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFISSTNDDLSQLLKAD 297 Query: 344 NSKMFTVEKGKITD 357 N K F V+ G I++ Sbjct: 298 NEKKFHVKHGVISE 311 >UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=Alphaproteobacteria RepID=Q2W9N3_MAGSA Length = 394 Score = 269 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 23/373 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + DFR T L L GANG+GKT++LEA+ L GR R + R Sbjct: 17 VRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAADITR 76 Query: 63 HEQEA---FVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLIT 118 H A + + L G IG ++ + + VRIDG K +LA L+ +T Sbjct: 77 HGLAAGSPWAVAATLDGPAGRVEIGTGREAGHERRSVRIDGKPA-KPGDLAGLVSALWLT 135 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------E 172 P L G RR FLD F PG + +++R LR Sbjct: 136 PAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGPRVDPA 195 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ-RGW------- 224 + ++ + +++ R E + F P L + GW Sbjct: 196 WMAALEEGMARHGTRVALARVESIRRLDEACRAGLGPF-PAAGLAVEGEIEGWLAGGLSP 254 Query: 225 -EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALR 282 E E + L RD GPH++DL +R + S G+ K ++ ++ Sbjct: 255 DEAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKAVLVSIV 314 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LAQG + GR L L+D+ A+ LD+ RR L L A ++Q +++ A + Sbjct: 315 LAQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDA-MLFAGFG 373 Query: 343 ENSKMFTVEKGKI 355 E ++ F V + Sbjct: 374 ERAQFFRVTDATV 386 >UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTD9_9GAMM Length = 357 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 110/358 (30%), Positives = 168/358 (46%), Gaps = 6/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L IR+ R IE LA P +N+LVGANG+GK++VLEA++ LG G+++R ++ Sbjct: 1 MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRGP-RQL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR F+L + + + G+ ++R G L L+P+Q I Sbjct: 60 IRDGSSCFLLSVLRNEDLGLNDRIVLEQNGGERQMRFAGEHLRSQWALLELLPIQAIHSG 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + G RR LDWG + + +RLL QRNA LR E PW+ Sbjct: 120 NSEFIAGSADDRRRQLDWGIYRRHREYGDHLRQYRRLLAQRNAWLRSQGHKE--DPWEHL 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 L E + +R+ A + + K+ S + Q GW +AEVL + Sbjct: 178 LAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHLQSGWRDGMRFAEVLREDRS 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + +T GPH+A++ R DG D+LSRGQL+ L RLAQ + + + Sbjct: 238 SDAETGFTRSGPHRANILFRVDGRSAADSLSRGQLRTLGNCFRLAQLQAIKDSGLELPVV 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 LIDDFA+ELD R +L A QVF + A + + +T++ G++ + Sbjct: 298 LIDDFAAELDPAGRLWWRQQLDALGVQVFAAGTEAAALP--MNAEDCQWTIQAGQLRE 353 >UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=Borrelia RepID=A1QZM4_BORT9 Length = 358 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 76/355 (21%), Positives = 143/355 (40%), Gaps = 7/355 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + ++ +F+NIE + + G NGSGKT++L+AIY L +F +I Sbjct: 5 IKKVEFFNFKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRELIT 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + + F L E + IGL+ + G +++++ + L +P + + Sbjct: 65 YGKTEFYLKCFYNTEGKAGEIGLSL-RNGKKEIKVNNSIVKDRKNLILNIPSVIFSNYDT 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G P +R F D + + +++L+QRN LRQ + + L+ +++ + Sbjct: 124 DFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQGNK-DLLKVYNETFV 182 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE--KETEYAEVLERNFE 239 A +I+ R + +SL + + K E+ + L + Sbjct: 183 DFAFEITKMRENFIKHFYEFFKYYYSFIFDVSYSLEIKYLPSVKCSKRDEFLQTLLLKEQ 242 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 + T GPH+ I + S GQ++ L RL Q ++ G + Sbjct: 243 DELYSESTLIGPHRDLYEILSGERVFTHHSSTGQIRALALIYRLIQVIMFNKQFGIAPIL 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 L DD ELD RR + L SQ F + + + I D ++ ++ G+ Sbjct: 303 LFDDVFLELDSMRRKRIFDIL-PKDSQCFFTFLDDCYDIK-QDSKFIVYRIKNGR 355 >UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFT6_LIBAP Length = 375 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 155/365 (42%), Gaps = 15/365 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 Query: 62 RHEQ-EAFVLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLI 117 R F R++G E I + + + D VR I+ V EL + + + Sbjct: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 P + +G RR FLD F +P + +RL++ RN L + Sbjct: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMAD-TCKQFLPEFSLTFS-FQRGWEK------ET 228 + ++ L +I+ R E +++ + + K+ P L+ + F G + Sbjct: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGE 287 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 ++ +G + L+D+ ++ LD+++R L + SQ+F++ V D +E +K Sbjct: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKS-VFDSLNETAKF 364 Query: 348 FTVEK 352 + Sbjct: 365 MRISN 369 >UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=Bacteria RepID=C3JBV9_9PORP Length = 372 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 157/365 (43%), Gaps = 10/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F++I TA +P N G NG GKT++L+AI+ L R+ + Sbjct: 1 MVLEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLA 60 Query: 61 IRHEQEAFVLHGRLQGEERETA--IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR +L G + E E I L + +G +++E P+ +I+ Sbjct: 61 IRIGSTEAILSGDYRANEGEETDRIALRLRMGQAKALSRNGRLYKRLSEHIGRYPLVIIS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPW 177 P+ + L+ GG RR +LD ++ + R L+QRN L+ + E L Sbjct: 121 PQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEMLLSIV 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETE-YAEVL 234 ++++ +I+ RAE+ ++ + S +T ++ E + + L Sbjct: 181 EEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYLTATAPNRELFTQDL 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +R YT +G HK DL + + S GQ K + AL+ + L + Sbjct: 241 RQRRREERATGYTTYGIHKDDLEMLLGENLMRKIGSEGQNKTFLTALKFTEYNLLANKLQ 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAEHVIDMSDENSKMFT---V 350 R + L+DD +LD ER + + + Q+F++ + +++ D+ + + F V Sbjct: 301 CRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIEAQHESFHLYAV 360 Query: 351 EKGKI 355 + G I Sbjct: 361 DHGNI 365 >UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNH5_9PROT Length = 375 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 88/361 (24%), Positives = 141/361 (39%), Gaps = 12/361 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +TRL + FR+ +A+ G NG+GKT++LEA+ +G GR R +G + Sbjct: 7 RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66 Query: 62 RHEQEA-FVLHGRLQGEERETAIGLTKDK-QGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 R + + + L E + L + V++DG L + Q +TP Sbjct: 67 RQGSDGGWGIGVDLGTGEGRRRLALRAEGVPLKRHVQVDGEPVRSTGTLLDSVRFQWLTP 126 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L P RR FLD P + L+QR AAL L P + Sbjct: 127 AQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGWPPAILEPLEA 186 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS--------FQRGWEKETEYA 231 ++ I R + A + + + P L+ S + YA Sbjct: 187 QMAEAGIAIDEARRQTLAALQVNYERVQETAFPRAGLSLSGPFEDIAGIPTLAARRESYA 246 Query: 232 EVLERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 ++LER RDR+ T GPH++DL + S G+ K L+ L LA Sbjct: 247 DLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHATASL 306 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + + L+D+ A+ LD++RR LA+ L VF++ + D + V Sbjct: 307 AATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDR-ALFDAWGDRVDRLHV 365 Query: 351 E 351 + Sbjct: 366 D 366 >UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RECF_SYNWW Length = 365 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 160/367 (43%), Gaps = 18/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I+DFRN++ + SPG N G N GKT++LEA+Y L G +FRS + + Sbjct: 1 MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +E + + R +ER +T G RI+ + + L +P+ Sbjct: 61 ISYESSSLQVQARYNHQERIIDSSITYGLDG-KVFRINKKRASY--NHTDRLRIILFSPD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPWDK 179 L+ G P RR FLD+ + N +++LK+RN L+ + T + Sbjct: 118 DLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFAIIND 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKETEYAEVLER 236 + LA Q+ R + + + Q + + ++ + ++L+ Sbjct: 178 IFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKINLDILKD 237 Query: 237 NF--------ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + E++++ T GPH D+ I + S+GQ + ++ L+LA+ Sbjct: 238 SLKKQVESETEKEKKRKTTLLGPHLDDMHIYLNEQMARLFASQGQQRNIVICLKLAEIMT 297 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + G ++L+D+ +ELDD R L L + Q F++++ E M ++ +F Sbjct: 298 FRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVM---DASIF 354 Query: 349 TVEKGKI 355 V+ G + Sbjct: 355 LVKDGCL 361 >UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=Psychrobacter RepID=Q4FVT1_PSYA2 Length = 404 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 112/403 (27%), Positives = 181/403 (44%), Gaps = 54/403 (13%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL I RN+ +LA + N ++GANGSGKTS+LE ++ L G++FR Q R I+ Sbjct: 2 IERLQISYLRNLTPINLAPAA-CNVIIGANGSGKTSLLEGMFLLSRGKSFRHNQPKRYIQ 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H ++A +H +L + + K + +R++ T + + L +P LI P Sbjct: 61 HHKDAATVHAKLSDG---RTLAIQKQADATTILRLNQTTVYNQSILTEQLPTLLIDPSTM 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLRPW 177 +L G RR LDW FH + GF W +RLLKQRN+ L+Q + +LR W Sbjct: 118 DMLEQGSASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRHLTHVQLAELRAW 177 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKETEYAEVLE 235 DK L A I +R +++ Q LP + L+ S+ G++ L Sbjct: 178 DKGLASHAALIHHYREAIFEAWQPYFSESIAQLLPAYAEQLSLSYNAGYDTSVALDIQLN 237 Query: 236 RNFERDRQLTYTAHGPHKADLRIR-----------------------------ADGAPVE 266 ++D QL YT G H+AD+ + Sbjct: 238 ERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHLNSPLAAAADSTFKLPILKEQAA 297 Query: 267 DTLSRGQLKLLMCALRLA------------QGEFLTRESGRRCLYLIDDFASELDDERRG 314 + LSRG+ KLL+ ALRL+ + + + L+DD +ELDD Sbjct: 298 NILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAKLSATPVVLLDDITAELDDRAIE 357 Query: 315 LLASRLKATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 +L S L QVF+++++ + + + E ++F +++G I Sbjct: 358 ILLSTLAQLPCQVFMTSLTDSILPLVYEYWEKPQVFHMKQGSI 400 >UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N690_9BACT Length = 353 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 139/342 (40%), Gaps = 1/342 (0%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L + +FR+ S G NG+GKT++LE+IY L R+FR++ ++R Sbjct: 4 IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + F L R+ + L + G + I + +E + PE Sbjct: 64 IGERGFELKARVDKGAYHEELRLAQTLAGKRETWIGANRIRRSSEFIREFRAVVFVPEDR 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G +RR F D + G+ TA +N R L QRN AL+Q + ++ E+ Sbjct: 124 NISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQKEQAAVAAAFEPEMA 183 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDR 242 A I+ R Y+ I +++ + E EY E+LERN +++ Sbjct: 184 VNAPLIARQRRIYAKLIEEEVSRMLAEDGNLEFRIVCRTDYPENAAEYREMLERNRPKEQ 243 Query: 243 QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLID 302 + T GP + +G + S GQ++++ L+LA+ + R + L+D Sbjct: 244 LRSCTLSGPQLDEFDFLLNGKLLRYYGSTGQIRIISLLLKLAEFNLVKRAAKEPVAVLVD 303 Query: 303 DFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 D ELD+ + + Q F + + D Sbjct: 304 DVTGELDELNKARFFRTISGADQQ-FFTFTELPELEIFRDAE 344 >UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax=cellular organisms RepID=RECF_SYNPX Length = 365 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 86/358 (24%), Positives = 145/358 (40%), Gaps = 20/358 (5%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 ++ FRN L L+ ++G NG GK+++LEA+ LG R+ R Q +I+ E Sbjct: 1 MQGFRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPR 60 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 +L L ++ + L +QG + R +G + +L + + L+ G Sbjct: 61 ALLRAGLDDGDQ---LELELRRQGGRQARRNGKTLDRQLDLIGPLRCIGFSALDLELVRG 117 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT------RYEQLRPWDKEL 181 P RR +LD EP + RLL+QR+ R+ R L +D ++ Sbjct: 118 EPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQM 177 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETE---------YA 231 ++ +I R + L +Q G + E Sbjct: 178 ALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAIE 237 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + +L GPH+ ++ ++ G P S GQ + L+ L+LA+ E +T+ Sbjct: 238 EQLRLQRPEEERLGSCRVGPHRDEVSLQLGGTPARRFGSSGQQRSLVLGLKLAELELVTQ 297 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 G L L+DD +ELD R+ LL + + Q VSA E+S++ Sbjct: 298 LFGEAPLLLLDDVLAELDPTRQHLLLEAV-GQEHQCLVSATHLSGFEGGWREHSQILK 354 >UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMS6_FERNB Length = 339 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 78/339 (23%), Positives = 143/339 (42%), Gaps = 22/339 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FR ++ G N + G NG+GKTS+LEAI L + R+FR + + Sbjct: 6 MLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYHL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI---DGTDGHKVAELAHLMPMQLI 117 I+ F + G++ ++ I + K +I DG + ++ + Sbjct: 66 IKFGTNFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAIPF 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRP 176 + + + +++G P RR F D + ++ N ++LL +RNA L + E++ Sbjct: 126 SFKDYLMIDGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNALLAEENVDREKVLK 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLER 236 E+ PLAE+I R ++ + P F + + + + +Y + Sbjct: 186 LANEMQPLAEKIVEKREIMINELSKYLD-------PMFKVEYVSEFKGKNIADYID---- 234 Query: 237 NFERDRQLTYTAHGPH-KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 D + T GPH D +G + S GQ +LL +L +A + + Sbjct: 235 ---EDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQKRLLYLSLIIAFKKLIEETKLY 291 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ++L DD + LD LL + QV ++ +S Sbjct: 292 EPVFLFDDPGNVLDPH---LLEKFISNLSGQVIIAGLSP 327 >UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDE2_THET1 Length = 386 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 77/364 (21%), Positives = 139/364 (38%), Gaps = 39/364 (10%) Query: 24 GFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE---QEAFVLHGRLQGEERE 80 G ++G N SGKT++LEAIY L ++ R+ +I +E R+ E R Sbjct: 4 GPILVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEVRR 63 Query: 81 ---TAIGLTKDKQG-------DSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPK 130 + +T K+ ++R++G + + +L + + + P+ L+ G P Sbjct: 64 RSPIQVEITILKESTAQGENVRKRIRVNGVN-KRAIDLIGQVNVVMFGPQDLDLIVGAPS 122 Query: 131 YRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAA----------LRQVTRYEQLRPWDKE 180 RR +L+ + + +R++ QRN LR + +Q WD E Sbjct: 123 LRRRYLNITISQLDHQYVRTLQTYERVVLQRNTLIKALSDRAFKLRDESINDQFAYWDNE 182 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQF---------------LPEFSLTFSFQRGWE 225 L+ + R E + + + + L R E Sbjct: 183 LVNQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSIAYKSTLFDSLPLQLDNPREEE 242 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 Y + + + + T GPH+ D+ G V SRGQ + ++ A++LA+ Sbjct: 243 IRDLYIKKIHDLRREELRRGMTLVGPHRDDISFLVGGVDVGVYGSRGQQRSVILAIKLAE 302 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + + +G + L+DD SELD ERR L + Q V+ + + Sbjct: 303 VDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTDLLTIGREFLAEA 362 Query: 346 KMFT 349 +F Sbjct: 363 SLFE 366 >UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=Gluconobacter oxydans RepID=Q5FUT9_GLUOX Length = 367 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 145/367 (39%), Gaps = 13/367 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL + DFRN L G NGSGKT++LEA+ L GR R + + Sbjct: 1 MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD--KQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 R E + + LQ E IG D ++ R+DG + A + +T Sbjct: 61 CRQGAERWGVAATLQSGLDEFRIGTGSDLSEKQRRTFRLDGENIRSQALIGQRFSCVWLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRPW 177 P+ L G RR FLD P + R + RN L + E L Sbjct: 121 PQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAEWLTSI 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAAD------MADTCKQFLPEFSLTFSFQRGWEKETEYA 231 + + A S R + A + + S + Q E E Sbjct: 181 EDSIARHAVAASAARLALIESMNAHPFENDGFSASTLHLDCAISSRLTTQPALEVEDWIR 240 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 L + DRQ + T+ G H+AD + A G P + S GQ K+++ L+ + Sbjct: 241 NSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPA-ELSSSGQQKVMLTGTILSHARLM 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 T+E G L+D+ LD+ RR L L+ ++ V ++ AE ++ ++ F+ Sbjct: 300 TQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAGR-AQFFS 358 Query: 350 VEKGKIT 356 + G I+ Sbjct: 359 IRNGTIS 365 >UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=Bartonella RepID=A1UU73_BARBK Length = 378 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 138/368 (37%), Gaps = 17/368 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI- 61 +T+L + +RN ++ S G NG+GKT++LEA+ L GR R V Sbjct: 6 VTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYSDVSC 65 Query: 62 -RHEQEAFVLHGRLQGE-ERETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLIT 118 R E E FV+ RLQ E +IG + G ++ I+G + L + +T Sbjct: 66 SRGEGEGFVVFARLQCALYGEVSIGTALEAGGSNRRLHINGEN-EACDCLTDYCHISALT 124 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPW 177 P L G RR FLD + ++ + ++ RN Sbjct: 125 PSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDRAWFNAL 184 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCK---------QFLPEFSLTFSFQRGWEKET 228 + ++ LA I+ R + + Q + E Sbjct: 185 EMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMSAVDVEE 244 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 E+ + L RN DR T GPH+ DL+ AD + S G+ K L+ L L Sbjct: 245 EFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGLVLCHAH 304 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 S ++L+D+ A+ LD RR L L Q F++ + D ++ Sbjct: 305 LTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDR-ILFDSLKGRAEF 363 Query: 348 FTVEKGKI 355 F +E G + Sbjct: 364 FEIEDGAL 371 >UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B8DYH4_DICTD Length = 340 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 22/339 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + +R+FRN G N + G NGSGKTS+LEA+ L + R+FR + ++ Sbjct: 6 MVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI---DGTDGHKVAELAHLMPMQLI 117 I+ ++ F ++G++ I ++ K +I DG + ++ + Sbjct: 66 IKLGEKFFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAIPF 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 + + + +++G RR F D + ++ N ++LL +RN L++ + + Sbjct: 126 SFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDRDYVIY 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLER 236 KE+ PLAE+I R ++ + P F + + + + +Y Sbjct: 186 LAKEMQPLAEKIVEKRETMIKELSKYLD-------PMFKVEYISEFKGKNIVDY------ 232 Query: 237 NFERDRQLTYTAHGPH-KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 E D T GPH D G P + S GQ +LL +L LA + + Sbjct: 233 -IEEDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLVLAFRKLIEETKLY 291 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ++L DD + LD LL + QV ++++S Sbjct: 292 EPVFLFDDPVNVLDPH---LLEKFISHLSGQVIIASLSP 327 >UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJ66_ACIF5 Length = 350 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 12/356 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L I+ R IET DL +N+L+GANG+GK+SVLEAI+ LG G+ +R V Sbjct: 1 MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +A+++ L G + + ++R DG L ++P+Q + + Sbjct: 60 LREGDDAYLVSAHLSGHFLALR-----RRGEEREIRYDGEPLGSAWLLLDILPLQSLHED 114 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++G + RR LDWG ++ + + T + +R L+QRNA L+ + PWD Sbjct: 115 NSHFVSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQ---PWDDG 171 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 +I E I R + A + ++ +++ S L+ GW++ + L R+ E Sbjct: 172 VIVAGEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEGMALGDCLLRDHE 231 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +DR+ YT GPH+A+L R G P D LSRGQL++L A RLAQ + L + Sbjct: 232 QDREAGYTHSGPHRANLAFRVRGKPAPDILSRGQLRVLGLAYRLAQVKILKQAGLPLPTI 291 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LIDDFA+ELD R + L Q+F + +A + + F + G++ Sbjct: 292 LIDDFAAELDASARDWWVNELDLLGVQIFAAVTTARQIPATVGGSH--FCLAAGQL 345 >UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3F5_9BACT Length = 352 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 154/360 (42%), Gaps = 17/360 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + R+FRN+E A +A PG N L GANG+GKT++LEA++ + AF + Sbjct: 1 MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ + E ERE I + +R+DG + +L + +P P Sbjct: 61 VKWQSEGGASLAAQAAGEREAIIEAVIMARAS--LRLDGK-LCRWGDLRNCVPSLTFLPS 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ G P RR FLD C P + S +++ + R L R ++ Sbjct: 118 DMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHST---RVTEET 174 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWE-KETEYAEVLERN-- 237 + L+ I R E A + + + + LP + + +RG + E R+ Sbjct: 175 MANLSAWIWECRLEVIAALREHL-EKWRGLLPR-KIDLNLKRGGSGNADDLLEDFHRSCA 232 Query: 238 --FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ER+R GPH+ DL I +G + LSRGQ + AL + + R Sbjct: 233 ILAERERASGLPLVGPHRDDLVIGCEGRLASEVLSRGQRRRAALALVMGAASAVERRGRA 292 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L D+ ASELD+ R +L L+ ++ QVF + + + + V GKI Sbjct: 293 SPVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAES----ALPCFQGTRWQVSAGKI 348 >UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 Length = 343 Score = 257 bits (656), Expect = 7e-67, Method: Composition-based stats. Identities = 92/341 (26%), Positives = 143/341 (41%), Gaps = 12/341 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R+FRN+ PG + LVGAN GKTS+L I+ G L + + Sbjct: 1 MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEV--PLGLADL 58 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +E LH ++ E + G +V ++G + L L L++P Sbjct: 59 VRFGEEEAWLHAEVETELGAYRLEHRLGPGG-REVLLNGKRV-SLRALWELPGSVLVSPL 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + G + RRA+LD + S ++ L+QRNA L+ E L WD+E Sbjct: 117 DLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG--GEGLSAWDRE 174 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLERNFE 239 L ++I R + A + + E L G LE + Sbjct: 175 LARYGDEIVALRRRFLRRFAPILREVHAALAAKEAGLRLEETAG----EGVLRALEASRA 230 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +R+ T GPH+ DL +G P SRG+ K L ALRLA+ L G L Sbjct: 231 EERERGQTLVGPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLL 290 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 L+D++ ELD+ RR + + +A Q ++ + A + + Sbjct: 291 LVDEWGEELDEARRRAVLAYAQALP-QAILAGLEAPPGVPV 330 >UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4S9_9ACTO Length = 409 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 148/395 (37%), Gaps = 55/395 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L DFR+ E L+L PG +G+NG GKT+++EA+ L + + R + Sbjct: 1 MYVSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 IR + VL ++ ER T + + ++ R+ + + EL ++ Sbjct: 61 IRRAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRARLGRSPV-RPRELLGVLRT 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------- 167 + PE +L+ P RR FLD P + ++L QR + L+ Sbjct: 120 VIFAPEDLSLVREEPGVRRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAARRS 179 Query: 168 -VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRG-- 223 + L WD +L A + R + + +A + + + +++ Sbjct: 180 TASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRSSLL 239 Query: 224 ---------------------------WEKETEYAEVLERN----FERDRQLTYTAHGPH 252 + AE LE R+ G H Sbjct: 240 AHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGANLVGAH 299 Query: 253 KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE-----SGRRCLYLIDDFASE 307 + +L + G P + S G+ L ALRLA E L + + ++DD + Sbjct: 300 RDELSLFLSGMPAKGFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLILDDVFAS 359 Query: 308 LDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LDD+RR LA + Q QV V+A + V D Sbjct: 360 LDDKRRRALAHTVAGAQ-QVLVTAAVPQDVPGELD 393 >UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TP62_9BACT Length = 354 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 90/361 (24%), Positives = 151/361 (41%), Gaps = 16/361 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+FRN+ET + N L+G NG+GKT++LE+++ L F+SL+ + Sbjct: 1 MFFSESGTRNFRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPL 60 Query: 61 IRHEQEAF--VLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + + L G +GE+ + + ++ DG + A + +P Sbjct: 61 VNWNSDESRGFLEGTFEGEDN---VLIQSSVTSRCAMKCDGKRSN-CASIRFRVPALAFL 116 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P L+ GGP RR FLD C P + + +R ++ + A L + E + D Sbjct: 117 PGDLALIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGRSTELI---D 173 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS---FQRGWEKETEYAEVLE 235 + P+AE I T R + S + + L S Y E + Sbjct: 174 SVMAPMAEWIWTCREKASLAVTMGLESFSDLLPGPIELALSRGGIGLAGNNPIGYIEGVR 233 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + GPH+ DL I A G SRGQ + A+ +A G + R+ R Sbjct: 234 SRRRAEIGSGRPLVGPHRDDLTIDASGMEASSRFSRGQRRRTSLAMVMAAGWAVERKLRR 293 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+D+ ASELD R + L ++ Q+F + + + ++TV +G+I Sbjct: 294 SPILLLDEVASELDQSGREITVETLVSSGWQIFAATAEDDLIRWP----GSLWTVREGRI 349 Query: 356 T 356 T Sbjct: 350 T 350 >UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFZ4_RHOVA Length = 400 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 101/381 (26%), Positives = 153/381 (40%), Gaps = 29/381 (7%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L + DFRN L G L GANG+GKT+ LEA+ L GR RSL + R Sbjct: 9 IAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPFPELAR 68 Query: 63 HEQEA-FVLHGR--LQGEERETAIGLTKDKQG------DSKVRIDGTDGHKVAELAHLMP 113 + + + GE+ G+ G V+ID L + Sbjct: 69 SGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGALVRI-R 127 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ 173 M +TP L G RR FLD +PG+ A S +R ++QRN AL + Sbjct: 128 MLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEEFDSPPM 187 Query: 174 L---------------RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF 218 L + + L+ +I R + A T L E + Sbjct: 188 LTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTLEEQAAAL 247 Query: 219 SFQRGWEKETE-YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKL 276 S ++ + YA L + +RDR T GPH++DL + + S G+ K Sbjct: 248 SEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMCSTGEQKA 307 Query: 277 LMCALRLAQGEFLTR-ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 L+ L LAQ + R G L L+D+ A+ LD RR L S + A +QV+++ Sbjct: 308 LLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVWMTGTDLA 367 Query: 336 HVIDMSDE-NSKMFTVEKGKI 355 + + +++F V G I Sbjct: 368 TFTPLRNATETQLFVVSNGTI 388 >UniRef50_C9RJE3 DNA replication and repair protein recF n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RJE3_FIBSS Length = 419 Score = 254 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 96/413 (23%), Positives = 158/413 (38%), Gaps = 75/413 (18%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++++ I R++E+ D PG N + G NG GKT++LE+IY L G +FRS ++ +I Sbjct: 2 ISKVFISKMRSLESMDCNFEPGINVICGPNGCGKTTILESIYLLAQGFSFRSHELRELIT 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +Q +L G E RE L +G S+VR +G A P ++ P Sbjct: 62 WKQNELILRGEFYDEGRERMRALRVFSRG-SEVRENGETLKSPAAFFGTCPAVIMQPSDI 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-------EQLR 175 LL GGP RR +LD A N +R+L+QRN L++ + + R Sbjct: 121 ELLRGGPDVRRRWLDEILCFRSSANSLALRNYRRVLQQRNKWLKEFKQKGFAVGGEDLFR 180 Query: 176 PWDKELIPLAEQISTWR-------AEYSAGIAADMADTCKQFLPEFSLT-FSFQRGWEKE 227 +LI L ++ R +E ++ + + + + Sbjct: 181 VLTLQLIDLGAKVWAARLALSKEVSEIITRYYRKLSGGVDEITCAYKSSILKTLDALDAA 240 Query: 228 TEY--------------------------------------------------AEVLERN 237 E+L Sbjct: 241 DPLSDEMMDEIPSGATGAAEGVVEIARGECAECSADGSGNVAGSAADGSDVVSEEMLRNA 300 Query: 238 FER--------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 F R +R T GPH+ DL + A G + S+GQ + A+R A + Sbjct: 301 FARKLADLEFVERLQGMTMAGPHRDDLALCASGYEMRSVGSQGQCRSAAVAMRFAAVDVA 360 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 +R + + L+DD +ELD RR +AS ++ + QV ++ AE + +D Sbjct: 361 SRYL-TKPILLLDDIFAELDVNRRDAVASLIREKECQVVIATPQAEDLPFKAD 412 >UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax=Rickettsia RepID=RECF_RICRO Length = 360 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 149/351 (42%), Gaps = 10/351 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L L + ++RN + +L L+G NGSGKT++LEAI GR RS ++ V Sbjct: 5 FLHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVC 64 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + ++ ++ LQ + + + ++ EL+ M +TP Sbjct: 65 KTSEDHCLVKALLQSKLGLAEFTTQFKRSSNRRITEYNESKIANNELSKFTSMVWLTPHM 124 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRPWDKE 180 + G RR FLD ++ +P S + + +RN L + L+ +++ Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS------FQRGWEKETEYA-EV 233 + ++ I+ R + + + D +F P+ L+ G E + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDLENEF-PKADLSIDGIVEQKILNGKENIVSFITAE 243 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + +D+ L T+ G HK+D ++ + S G+ K ++ A+ LA+ + + Sbjct: 244 LYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIKL 303 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 + + L+D+ LDD+RR L L Q++V+ + E + + +++ Sbjct: 304 TKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANK 354 >UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW13_9BACT Length = 352 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 78/344 (22%), Positives = 146/344 (42%), Gaps = 11/344 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L +R FR + ++ +PG NF+VG N GKTS+LEA L ++ R ++ VI+ Sbjct: 13 LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 HE+ FV+ G R ++++ K+ +D + E + + Sbjct: 73 HERRGFVVDGYF--GVRHLQFYFSRER---KKLALDEVEQKSAREYLEIGRVVYFANSDI 127 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKEL 181 L+ G RR FLD+ + + A + +R L+ RN L+ + R+ ++ +D+ L Sbjct: 128 ELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAFDEPL 187 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLERNFER 240 + ++++ RA+ + + + L + G ++ L Sbjct: 188 LSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGG--GEDFPATLAAAHNE 245 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D +L T+ GPH+ D+R +G S GQ + L+ AL+L L + + L Sbjct: 246 DARLRQTSAGPHRDDVRFMLNGQS-SSFASEGQQRTLVLALKLGAARLLEQRFESAPVLL 304 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 +DD EL D R +Q ++ + + ++ + Sbjct: 305 LDDIFGEL-DLDRRAALLAALPASAQKIITTTHLDWLPAEAEAS 347 >UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=Alcanivorax RepID=Q0VT28_ALCBS Length = 332 Score = 253 bits (647), Expect = 7e-66, Method: Composition-based stats. Identities = 103/326 (31%), Positives = 160/326 (49%), Gaps = 10/326 (3%) Query: 39 VLEAIYTLGHGRAFRSLQ-IGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI 97 +LEAIY +G G + R++R EA L+ + G + IG+ + G +++ Sbjct: 1 MLEAIYFIGSGGRSFRGGRLSRLVRDGAEAATLYAEVVGVQDVHRIGIRRTPGGIDAIKL 60 Query: 98 DGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRL 157 DG ++E+A L+P+ + P L+ G + RR F+DWG FH E F W Sbjct: 61 DGQTPKALSEVAVLLPVLALHPTSVELVFGASQLRRRFMDWGMFHVEHQFMPVWRAGSAA 120 Query: 158 LKQRNAALRQVTRY-EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL 216 LKQRNA LR +L W+++L +++I R Y + + + PE + Sbjct: 121 LKQRNALLRAGNPNLRELGFWNQQLSQTSDRIEGLRRGYLNALQRGLDEALTVLAPELKI 180 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 Q G K YA+ L R D + ++ G H++D+RI + G D LSRGQ KL Sbjct: 181 RLRLQTGLHKGESYAQALSRLQSDDLRRGFSQAGFHRSDIRIESHGVVARDRLSRGQAKL 240 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + L LAQ +++ SG+ C L+DD A+ELD+E R L L T Q ++A+ Sbjct: 241 VAYGLVLAQLPMISQ-SGKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQ 299 Query: 337 VIDMSDEN-------SKMFTVEKGKI 355 + ++N +KMF VE GK+ Sbjct: 300 WAAIVNDNDALQSVENKMFHVEHGKL 325 >UniRef50_D1BTA3 DNA replication and repair protein recF n=4 Tax=Actinomycetales RepID=D1BTA3_XYLCX Length = 485 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 120/329 (36%), Gaps = 40/329 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + D+ L PG N VG NG GKT+++EAI + + R + Sbjct: 1 MYVSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E V+ R+ +R + + L ++ RI+ + ++ ++ L PE Sbjct: 61 VRAGAERAVVRTRIVRGDRASTVELEITPGRANRARINRGQLGRARDVLGILRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---------RY 171 L+ G P RR LD P + +R+ +QR+A L+ + Sbjct: 121 DLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGRSPDL 180 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE------------------ 213 L WD + L QI R + + +A Q Sbjct: 181 GTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDAVLPD 240 Query: 214 -------------FSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRA 260 L + E ET + ++ + GPH+ DL + Sbjct: 241 DAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDLVLTL 300 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 G P + S G+ ALRLA L Sbjct: 301 GGLPAKGYASHGESWSFALALRLASYRLL 329 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 286 GEFLTRESGR--RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 F T E G + ++DD +ELD RR LA + + QV V+A + V Sbjct: 413 ARFWTEELGHDAEPVLILDDVFAELDLRRRDRLAELVAPAR-QVLVTAAVPDDVPSGLM- 470 Query: 344 NSKMFTVEKGKIT 356 + F V G +T Sbjct: 471 -ATRFDVVTGAVT 482 >UniRef50_C7JHC3 DNA replication and repair protein recF n=8 Tax=Acetobacter pasteurianus RepID=C7JHC3_ACEP3 Length = 382 Score = 253 bits (646), Expect = 9e-66, Method: Composition-based stats. Identities = 74/353 (20%), Positives = 125/353 (35%), Gaps = 12/353 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L +L + +FRN E + L G NGSGKT++LEA+ L GR R+ + + Sbjct: 13 RLLKLTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI---DGTDGHKVAELAHLMPMQLIT 118 R + + R++ E+ +G + R+ +G + IT Sbjct: 73 RMGATNWGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWIT 132 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPW 177 P+ L + G RR FLD P + R + QRN L+ + + + L Sbjct: 133 PQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGL 192 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-------SLTFSFQRGWEKETEY 230 + + A ++ R E I + F + E Sbjct: 193 EASMARHAVAVAAARQETVRQICHYAQNGLGAFPAAIATLECAVAQKLETSPALAVEDWL 252 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L E D G H++D + S GQ K L+ + LA + Sbjct: 253 REKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHARLV 312 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 T G+ + L+D+ LD RR L ++ ++ V ++ + Sbjct: 313 TDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPFAPLKQ 365 >UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=Treponema RepID=RECF_TREPA Length = 352 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 135/349 (38%), Gaps = 8/349 (2%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV--IRHEQEA 67 +FRN+ + +S F VG NG GKT++LE +Y +G +FR+ + Sbjct: 5 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESELYATHARSNE 64 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + + +GE T K G ++ + EL +P L + G Sbjct: 65 YRVKVMYRGEYTHTVQ--IFSKNGKKRIEKNLKKIRTKKELISSIPCILFFHNDLDFVVG 122 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQ 187 P+ RR FLD P + L K +N +++ R + L D ++ + Sbjct: 123 TPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKE-KRVQLLDALDTQIATVGFD 181 Query: 188 ISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE--TEYAEVLERNFERDRQLT 245 + WR + ++ + ++ W E L + + D + Sbjct: 182 LVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWSDSSVEEIVHSLYKRRKHDLAMG 241 Query: 246 YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFA 305 + GPH+ + A S GQ +L+ LR++Q F T +G+ + L+DD Sbjct: 242 MSMSGPHRDKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVTGKLPVLLMDDVL 301 Query: 306 SELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 ELD E+R L Q+F + + E E ++++ V +G Sbjct: 302 LELDPEKRERFMMSLPPYD-QLFCTFLPGEAYRRYGREKTRVYFVSEGA 349 >UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BVD4_GRABC Length = 373 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 134/350 (38%), Gaps = 15/350 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + FRN + PG +VG NGSGKT++LEAI L GR R+ + ++ Sbjct: 7 HIRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLA 66 Query: 62 RHEQEA---FVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLI 117 R + + +H R+ + + + VRIDG AEL + + Sbjct: 67 RQGEGGDGSWAVHARILSPTGPVELATGVLPGTERRQVRIDGDIIRGQAELGAHITTVWL 126 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TP+ L GP RR FLD + EP + L +R L L Sbjct: 127 TPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLAMRADPAWLAAV 186 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL--------TFSFQRGWEKETE 229 + + A ++ R Y + + P L S E E Sbjct: 187 EDSIARHATAVTASRLAYVTRLNDVLVQGGAGGFPPARLDLNCAIATRLSRHPAVEVEDW 246 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIR--ADGAPVEDTLSRGQLKLLMCALRLAQGE 287 L + E D + G H++DL ++ A G S GQ K L+ + L Sbjct: 247 LRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSA-SIASTGQQKALLIGVTLGHAV 305 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 L GR + L+D+ + LD ERR LL + L+ Q F++A + Sbjct: 306 LLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAF 355 >UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAH6_CHRVI Length = 366 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 159/355 (44%), Gaps = 10/355 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L I RNI DLA L GANG+GKTSVLEAIY L GR FR + G + Sbjct: 15 LRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTKAGPLTT 74 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHK---VAELAHLMPMQLITP 119 + + GR Q +R+ + L K+G + VR A+ + ++L+ Sbjct: 75 QGEFYTRVEGRYQPSDRDV-VRLRYVKEGATAVRDIHPPLWAETGGADWRSPLQVKLVGE 133 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 LL+G P RR FLDW FH E F + R+L QRNAA+R QL WD+ Sbjct: 134 NAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSG--GSQLGLWDR 191 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 I LAE + RA + A D C + ++RGW E E L + Sbjct: 192 RFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLHGTDLRYRRGWPDGRELGETLVALAD 251 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 ++ YT GP +AD R D SRGQ K+++ L+LA ++ Sbjct: 252 QELARGYTLAGPSRAD--FRIDPGEGRRGFSRGQTKIVVALLQLAAERVHRAHGREPVIW 309 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVS--AISAEHVIDMSDENSKMFTVEK 352 L+DD +ELD L S AT +QV + A + I + E+ MF VE Sbjct: 310 LLDDLEAELDRTLAERLWSAFGATGNQVIATRVATDGDPGIFGNTESLTMFHVEH 364 >UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H639_STRPR Length = 347 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 116/299 (38%), Gaps = 24/299 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + DFR+ ++ L PG VGANG GKT+++EA+ L + R + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + ER + L + ++ RI+ + + ++ ++ L PE Sbjct: 61 VRMGADRAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----------R 170 +L+ G P RR FLD P S+ +R+LKQRN L+ Sbjct: 121 DLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGGRGMD 180 Query: 171 YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKE 227 L WD+ L +++ R + A + + P +L + G + Sbjct: 181 LSTLDVWDQHLARAGAEVTAQRLDLIAALQPLADKAYEALAPGGGPVALEYRSSAGPMDQ 240 Query: 228 --------TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADG---APVEDTLSRGQLK 275 + L +++ + T G H +L ++ T S G + Sbjct: 241 AHGREALFEQLTAALAEVRKQEIERGVTLVGLHCDELILKLGHCPPRDTRATASPGPTR 299 >UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M116_ACIFD Length = 346 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 152/356 (42%), Gaps = 14/356 (3%) Query: 4 TRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRH 63 L I RN++ + +VG+NG GKTS+LE++ + GR+FR+ ++R Sbjct: 2 RSLRITGLRNLDLTIDHVPDDIIAVVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRV 61 Query: 64 EQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + V+ ++ E +G D++G + R+DG + L P+ P+ Sbjct: 62 GHDEAVVVADVERELAPPVRVGRRVDREGRLETRVDGQREQRGPSL----PVVSFHPDDV 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKEL 181 + +GGP+ RR FLD + G +R+L+QR ALR E L ++ L Sbjct: 118 QIASGGPEQRRRFLDECVVGLDRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSILEERL 177 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + +++ RA + IA + L RG E E L D Sbjct: 178 ARASVEVAELRARAAEVIAPHARAVIDEMLMSAGRVVVTYRGAGDEATLLEQLRARRGDD 237 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R+ T+ G H+ D+ I DG P+ S+GQ++ ++ AL++A + + + ++ Sbjct: 238 RRRGVTSVGFHRDDVEILLDGEPIRRMGSQGQVRTVVVALKVALARAMEAVTKEPPVLVL 297 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DD +ELD ER + ++ Q F+S + + G + D Sbjct: 298 DDLLAELDAERARRAVAMME--GMQAFISHTAPVEGSGFE------LRISHGALVD 345 >UniRef50_C0R4Z7 Recombination protein F n=10 Tax=Wolbachia RepID=C0R4Z7_WOLWR Length = 365 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 143/355 (40%), Gaps = 6/355 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV- 60 + +L + +FR+ +L + G NG GKT++LEAI L + + + Sbjct: 6 YIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKASEIQ 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R E +V+H +IG+ K ++IDG + L + + + P+ Sbjct: 66 NRFSNEDWVVHYDFFNGMDFNSIGIAKSFD-KKLIQIDGKTQSSYSSLYKISNVIWLIPQ 124 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L P R FLD E + + ++ ++R+ LR+ T L + Sbjct: 125 MDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDKNWLSSLEN 184 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAE-VLERNF 238 + A I R+ + + + + P+ SL FS Q + EY + L+ N Sbjct: 185 IMAVNAVSILRMRSSVLKTLQDTIDNHSGELFPKASLKFSSQLTLDDTAEYFQNRLKENR 244 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVE-DTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 E+D G H + R+ V + S G+ KLL+ ++ L+ + + Sbjct: 245 EKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSIILSSVKARCIHYNKAP 304 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L L+DD S LD R L + + Q Q +++ ++ ++ + K F + Sbjct: 305 LLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSYL-YSFKFFELSN 358 >UniRef50_B4WQ25 DNA replication and repair protein recF n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQ25_9SYNE Length = 401 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 156/399 (39%), Gaps = 50/399 (12%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 +++FRN + +A L+G N GK+++LEA+ L ++ R+ + ++ ++ Sbjct: 1 MQNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKT 60 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + +LQ E + + L G ++G + + + + L+ G Sbjct: 61 AHIKAQLQKELGPSELNLVLRNGGRRATILNGETLKRQQDFLGSLNAVQFSSLDIDLVRG 120 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--------QLRPWDK 179 GP RR+++D EP + ++LKQRNA ++Q T E Q+ WD Sbjct: 121 GPGERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMALWDA 180 Query: 180 ELIPLAEQISTWR-----------AEYSAGIAADMADTCKQFLPEFSLT-----FSFQRG 223 +L+ ++ R + I+ D + P S T S + G Sbjct: 181 QLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLSTEAG 240 Query: 224 WEKETE-------------------------YAEVLERNFERDRQLTYTAHGPHKADLRI 258 E + E ++ + + GPH+ D+ Sbjct: 241 LSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRDDIDF 300 Query: 259 RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLAS 318 + P S+GQ + L+ AL+LA+ E + G L L+DD +ELD +R+ L Sbjct: 301 SINHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKRQNQLLE 360 Query: 319 RLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 ++ + Q ++ E S++ TV +G + + Sbjct: 361 TIED-RFQTLITTTHLGAFDAKWLEQSQILTVHQGALLE 398 >UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J1_THEAS Length = 354 Score = 236 bits (603), Expect = 9e-61, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 142/360 (39%), Gaps = 14/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAF-RSLQIGR 59 M + + +RN+E + LSPG N G NG+GKT++LEA F R I R Sbjct: 1 MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIPR 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 R + + + E I ++IDG+ +EL MP+ P Sbjct: 61 --RGDGSPSPMSAAVAQASGEEEITCAFQFNRRPLLKIDGSAV-TGSELRRRMPVLAFLP 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + L++G P RR LD C PG+ A + +R ++QR A+LR E + Sbjct: 118 DSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCGRWEEMTL---R 174 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE---YAEVLER 236 + A +I R+ + + + ++ Q E + E Sbjct: 175 VMAREAVEIWRARSVVAPRLCQLSQAFASRLGIHLEASYVGQHESLDRLEPGRFLEAARS 234 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + GPH+ D+ + + G LSRGQ + AL +A + + + R Sbjct: 235 IKGEEMTHRRPRFGPHRDDVVLTSGGHAAGLALSRGQRRRAFAALVMASAQVVYKALRRG 294 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + ++D+ +E+D E R L+A L QV S D + ++ V G +T Sbjct: 295 PVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTADLPEAPD----GASLYRVRSGVVT 350 >UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q1_9BACT Length = 351 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 150/359 (41%), Gaps = 19/359 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L R FRN+ ++ S N + G NGSGKT+ LEA+ L F + + + Sbjct: 1 MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60 Query: 61 IRHEQE-AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 E+ AF L G GE T + +R+DG D ++ P P Sbjct: 61 TCWEENGAFELVGSFDGESGGT---VQVLCASRPSLRLDG-DRATWTDVRLFAPCLSFLP 116 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L+ GGP RR FLD G P + S+ +RL++ + LR D+ Sbjct: 117 AHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPG---DVADR 173 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW-----EKETEYAEVL 234 + PLA + R E+ + ++ + L + RG + E ++A L Sbjct: 174 IMKPLAGWLWLKREEFVGALQRELD--AQADLLSCPVQIGLHRGGGGACFDPEEDFAAGL 231 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 ER +R+ GPH+ DL + D SRGQ + AL LA G + + G Sbjct: 232 ERLGPAERKSGLPLVGPHRDDLTLTVSERRAIDYFSRGQRRRAALALILAAGGAVKSQLG 291 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 R + LID+ ASELD+ R + L + QVF + + + D F + +G Sbjct: 292 RSPILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLDWPGDR----FVMRQG 346 >UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=Hyphomonadaceae RepID=Q0ATT8_MARMM Length = 384 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 146/367 (39%), Gaps = 20/367 (5%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ-IGRVIRHE 64 L + +FR+ DL LSP L G NG+GKT++LEAI L GR RS G R Sbjct: 17 LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76 Query: 65 QE---AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + + E +G+ + RIDG LA LMPM +TP Sbjct: 77 ADIAPEWAVFAEADTREGGFRLGVGARGSARRETRIDGEPAA-QNALARLMPMIWLTPAQ 135 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPWDKE 180 L G R F D +P A S ++ +R L + + L + E Sbjct: 136 DRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAIEVE 195 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ---------RGWEKETEYA 231 + ++ R + + ++ + P+ L E E + Sbjct: 196 MAGHGVAMAAARLDALIRLQGEIDQRPEGVFPQADLALDGAVEADLAEGLTAGEAEDRFL 255 Query: 232 EVLERNFERDRQLTYTAH-GPHKADL--RIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L RD T GPH+ +L R RA P D S G+ K L+ L LAQ Sbjct: 256 AALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGD-CSTGEQKALILTLALAQARA 314 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 L ++ G L L+D+ + LD RR LA + A+ SQ +++ + + + + + + Sbjct: 315 LGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVE-KVLFEPFGDAIQYR 373 Query: 349 TVEKGKI 355 V +G + Sbjct: 374 EVHEGGV 380 >UniRef50_C5SHV9 DNA replication and repair protein recF n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHV9_9CAUL Length = 374 Score = 230 bits (586), Expect = 7e-59, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 142/372 (38%), Gaps = 20/372 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + DFR+ + D+ LS +L G NG+GKT+ LEAI L GR R + + Sbjct: 4 RIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSDLG 63 Query: 62 R-----HEQEAFVLHGRLQGEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELAHLMPM 114 R + A+ + L+ E + IG D + VRID L + + Sbjct: 64 RRLPQEAKGRAWGVSVELKSAEDDIRIGTGSDPRSLEKRLVRIDQQTV-PAGRLLDHIRL 122 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-Q 173 +TP + R F D F P T S ++ L++R L Q Sbjct: 123 VWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPADAVW 182 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE---- 229 L ++ L ++ R + + A++ + + P+ L + +E E Sbjct: 183 LDALEERLAEAGSEMIGARRAALSDLQAEI-EAHESAFPKADLGLINEASDARERETLNT 241 Query: 230 -YAEVLERNFERDRQLTYTAHGPHKADLRIRA--DGAPVEDTLSRGQLKLLMCALRLAQG 286 E R RD + GPH+ DL + P D S G+ K L+ L LAQG Sbjct: 242 ALREGFARARARDSAAGRSLFGPHRTDLSVFHREKDRPAAD-CSTGEQKALVLNLILAQG 300 Query: 287 EFLTRESGRR-CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 L+R + L+D+ A+ LD RR L Q + ++ Sbjct: 301 SRLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLFDGLAGRAL 360 Query: 346 KMFTVEKGKITD 357 + VE G+ + Sbjct: 361 GV-RVEGGQWVE 371 >UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax=Alphaproteobacteria RepID=RECF_CAUSK Length = 392 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 135/372 (36%), Gaps = 33/372 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L + DFR+ E A L +L GANG+GKT++LEAI L G+ R + V R Sbjct: 6 LLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLIEVGR 65 Query: 63 -----HEQEAFVLHGRLQ------GEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELA 109 A+ + + G++ +G + G VRIDG LA Sbjct: 66 RLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGAARRIVRIDGETVPPGR-LA 124 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 + +TP L RR F D F EP + + ++R L Sbjct: 125 DHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRLLTDAA 184 Query: 170 RYEQ------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ-- 221 Q L + L ++ RA + A++ + P L + + Sbjct: 185 ESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEIDSRGDRPFPRARLALTGEWE 244 Query: 222 -------RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRA--DGAPVEDTLSRG 272 E E A L RD GPH+ DL I P + S G Sbjct: 245 KLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAAE-CSTG 303 Query: 273 QLKLLMCALRLAQGEFLTRESGRR-CLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 + K L+ L LAQ L+R + L+D+ A+ LD +RR LA + A Q F++ Sbjct: 304 EQKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQAFLTG 363 Query: 332 ISAEHVIDMSDE 343 + Sbjct: 364 TDQSLFDHLKGR 375 >UniRef50_A5FW24 SMC domain protein n=3 Tax=Acetobacteraceae RepID=A5FW24_ACICJ Length = 379 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 136/365 (37%), Gaps = 14/365 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + DFR+ D L G NG+GKT++LEA+ L GR R ++ + Sbjct: 15 RIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAELA 74 Query: 62 RHE---QEAFVLHGRLQGEERETAIG--LTKDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 R + + R+ G E AIG + + ++ +DG A Sbjct: 75 RRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLLDGEPAAAARV-AARFSCLW 133 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLR 175 +TP+ L G RR FLD EPG + + + RN + L Sbjct: 134 LTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLWLA 193 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA---- 231 + + A ++ R + A +A P L+ G E A Sbjct: 194 TIEDSMARHAAALTAARLHVIERLNALLAAGAADPFPAARLSLDCPIGAELAHRPALAVE 253 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E L + R A P +ADL + A S GQ + ++ A+ LA + Sbjct: 254 EWLRGRYAATRAEPVAALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLAHAALVA 313 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 G + L+D+ LD R L L +QVF +A + + + ++ ++TV Sbjct: 314 ISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALG--DAAIWTV 371 Query: 351 EKGKI 355 +G + Sbjct: 372 GEGAL 376 >UniRef50_A5WBC3 DNA replication and repair protein RecF n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WBC3_PSYWF Length = 459 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 113/457 (24%), Positives = 182/457 (39%), Gaps = 108/457 (23%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 LT+L I RN+ + ++ + N VGANGSGKTS+LE++Y L G++FR Q R I Sbjct: 2 LTQLSIHQLRNLHSVNIKVG-QCNVFVGANGSGKTSLLESLYLLSRGKSFRHHQPKRYIS 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H +H + ++ + K + + +R+D + + LA +P LI P Sbjct: 61 HHAAHATVHAKFANGS---SMAIQKAQDASTILRLDQQTVYVQSALAKQLPTLLIDPSSM 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLRPW 177 +L G RR LDW FH +PGF W +RLLKQRN LRQ + ++L W Sbjct: 118 DVLEIGSSSRRQLLDWITFHVKPGFHAQWLAYQRLLKQRNTILRQSGYLSDYQRQELAAW 177 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETEYAEVLE 235 DK L A I+ +R E +Q LP+++ + F G+ + E+L+ Sbjct: 178 DKGLANHAALITHYRHEAFEEWQPLFNQLIEQLLPDYAPFIQLRFSAGYNTDLPLDELLQ 237 Query: 236 RNFERDRQLTYTAHG-------------------------------------PH-KADLR 257 + +D Q YT G H AD++ Sbjct: 238 QRLAQDFQTGYTRVGCHRADIQVLWLEDAQARQTVQQAAETSGMAQTAAHSNIHSHADIK 297 Query: 258 IRADGAP-----------------------VEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + D + LSRG+ KLL+ ALRL+Q L+ + Sbjct: 298 LSTDLVDNIEDMNNWEDETAYALTGNVREQAANVLSRGEKKLLITALRLSQLPLLSTKLS 357 Query: 295 RR----------------------------------CLYLIDDFASELDDERRGLLASRL 320 + + L+DD +ELD+ +L L Sbjct: 358 TKLSLTESAAVTDTVIGSNSASEDQPYPSALSDAILPVVLLDDITAELDERALSILLKTL 417 Query: 321 KATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 Q+F++++ + + + ++ F V++G I Sbjct: 418 SELSCQIFITSLDGDIMPQIKQYWPQAQRFHVKQGHI 454 >UniRef50_A5CD18 DNA replication and repair protein n=2 Tax=Orientia tsutsugamushi RepID=A5CD18_ORITB Length = 383 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 69/365 (18%), Positives = 143/365 (39%), Gaps = 25/365 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +T+L++ ++RN+ ++ ++G NGSGKT++LE+I GR R + ++ Sbjct: 14 RITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 73 Query: 62 RHEQE-------------AFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAE 107 R E ++ LQ I + + ++++ Sbjct: 74 RKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTITSHK- 132 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR- 166 L L+ M ITP+ ++ G RR LD + + + + L++R LR Sbjct: 133 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 192 Query: 167 QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--- 223 ++ + + L ++ +I++ R + + + F P+ L Q Sbjct: 193 NSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEIDAPF-PKVKLDIQCQIAELC 251 Query: 224 WEKETEYAEVLE----RNFERDRQLTYTAHGPHKADLRIRAD-GAPVEDTLSRGQLKLLM 278 ++ + E++ + D + G H++D ++ + S G+ K L+ Sbjct: 252 LQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKALL 311 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 +L +AQ + R + L+D+ LD E+R LA L Q ++S+ + Sbjct: 312 ISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISSTEPDDAN 371 Query: 339 DMSDE 343 S+ Sbjct: 372 LFSNN 376 >UniRef50_A2BYV6 DNA replication and repair protein recF n=8 Tax=Prochlorococcus marinus RepID=A2BYV6_PROM5 Length = 325 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 136/328 (41%), Gaps = 21/328 (6%) Query: 39 VLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRID 98 +LE++ L R+ R+L +I+++ E V++G++ + + + ++G K+ ++ Sbjct: 1 MLESVEVLSQLRSSRALSDKDLIKNDSEMAVIYGQIDFTDD---LKVNLFRKGSKKIYVN 57 Query: 99 GTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLL 158 + K +E+ + + ++ P YRR ++D EP + RLL Sbjct: 58 DSLLKKQSEIKNYIRSVCFCSNDINIVKSEPGYRRTWIDRVVSQLEPIYVELIHRFNRLL 117 Query: 159 KQRNAALRQVT-----RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-P 212 KQR+ R + E + +D ++ + +I R + I + Sbjct: 118 KQRSYFWRSESFQKDQSSEVIESFDIQMSLICTRIFRRRRRAISRIRPYVEYWHNHLSKS 177 Query: 213 EFSLTFSFQRGWEK-----------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD 261 + ++ ++ +E + + L++ + + GPH+ D+ + Sbjct: 178 KEQISINYLSSFENIDEAEEEEEVISNQMVDQLQKQRAIEALTGKCSFGPHRDDIEFLIN 237 Query: 262 GAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLK 321 + S GQ + + AL++A+ + L L ++DD +ELD R+ LL + + Sbjct: 238 DISLRKYGSSGQQRTFILALKMAELDLLRNMINLPPLLILDDVLAELDMNRQNLLLNSV- 296 Query: 322 ATQSQVFVSAISAEHVIDMSDENSKMFT 349 +SQ F+SA + +S+M Sbjct: 297 GKESQCFISATHLDTFNQSFISSSQMIH 324 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=... 335 1e-90 UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax... 331 2e-89 UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=... 328 1e-88 UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax... 328 2e-88 UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=... 328 2e-88 UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=... 324 3e-87 UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=... 323 7e-87 UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=... 321 2e-86 UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=... 321 2e-86 UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=... 321 3e-86 UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax... 319 8e-86 UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Ta... 319 1e-85 UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=... 319 1e-85 UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=... 319 1e-85 UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax... 318 2e-85 UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=... 317 3e-85 UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=... 314 3e-84 UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=... 314 4e-84 UniRef50_UPI00016C0204 DNA replication and repair protein RecF n... 313 1e-83 UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=... 312 1e-83 UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=... 312 1e-83 UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax... 312 1e-83 UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=... 311 2e-83 UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Ta... 311 2e-83 UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax... 311 3e-83 UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=... 310 4e-83 UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=... 310 4e-83 UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=... 308 2e-82 UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=... 308 2e-82 UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=... 308 3e-82 UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax... 307 4e-82 UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=... 307 4e-82 UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=... 307 4e-82 UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=... 307 5e-82 UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=... 306 6e-82 UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=... 306 1e-81 UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=... 306 1e-81 UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax... 305 1e-81 UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax... 305 1e-81 UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=... 305 2e-81 UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=... 304 2e-81 UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=... 303 8e-81 UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=... 303 9e-81 UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=... 303 1e-80 UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax... 302 2e-80 UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=... 301 2e-80 UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=... 301 2e-80 UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=... 300 6e-80 UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=... 299 7e-80 UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax... 299 8e-80 UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=... 298 2e-79 UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax... 298 2e-79 UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=... 298 2e-79 UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=... 298 2e-79 UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=... 298 3e-79 UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=... 297 4e-79 UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax... 296 6e-79 UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=... 296 7e-79 UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=... 295 2e-78 UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=... 295 2e-78 UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=... 294 2e-78 UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=... 294 3e-78 UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=... 294 3e-78 UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=... 293 5e-78 UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=... 293 8e-78 UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=... 292 1e-77 UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=... 292 1e-77 UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=... 292 2e-77 UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=... 292 2e-77 UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=... 291 3e-77 UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=... 290 5e-77 UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=... 290 5e-77 UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=... 290 7e-77 UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax... 289 8e-77 UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=... 289 8e-77 UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=... 289 1e-76 UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=... 289 1e-76 UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax... 289 1e-76 UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=... 288 2e-76 UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=... 288 2e-76 UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=... 287 3e-76 UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=... 287 4e-76 UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=... 287 4e-76 UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=... 287 5e-76 UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=... 287 5e-76 UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=... 286 6e-76 UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=... 286 7e-76 UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=... 286 7e-76 UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=... 286 8e-76 UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=... 286 8e-76 UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=... 286 1e-75 UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=... 286 1e-75 UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax... 286 1e-75 UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=... 286 1e-75 UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=... 286 1e-75 UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=... 285 2e-75 UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=... 284 2e-75 UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=... 284 3e-75 UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=... 284 3e-75 UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax... 284 5e-75 UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=... 283 6e-75 UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=... 283 6e-75 UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=... 283 8e-75 UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=... 282 1e-74 UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=... 281 2e-74 UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=... 281 2e-74 UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=... 281 3e-74 UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=... 281 4e-74 UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococ... 281 4e-74 UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=... 280 4e-74 UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=... 280 4e-74 UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=... 280 7e-74 UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax... 279 7e-74 UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=... 278 2e-73 UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=... 278 2e-73 UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=... 277 3e-73 UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=... 277 4e-73 UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax... 277 5e-73 UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerof... 277 5e-73 UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=... 277 5e-73 UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=... 276 7e-73 UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=... 276 8e-73 UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=... 276 8e-73 UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=... 275 2e-72 UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=... 274 4e-72 UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia... 273 8e-72 UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=... 272 1e-71 UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibact... 272 1e-71 UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=... 272 1e-71 UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=... 272 2e-71 UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=... 271 2e-71 UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=... 271 2e-71 UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=... 271 2e-71 UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=... 271 2e-71 UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=... 271 2e-71 UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=... 271 4e-71 UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomi... 271 4e-71 UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=... 270 5e-71 UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=... 269 8e-71 UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=... 269 9e-71 UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=... 269 1e-70 UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=... 269 1e-70 UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=... 269 1e-70 UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=... 268 2e-70 UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=... 268 2e-70 UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=... 268 3e-70 UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=... 267 3e-70 UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=... 267 3e-70 UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=... 267 3e-70 UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleid... 267 4e-70 UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=... 267 6e-70 UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=... 266 1e-69 UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaeroc... 265 1e-69 UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=... 265 2e-69 UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=... 264 3e-69 UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=... 264 3e-69 UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=... 264 4e-69 UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=... 263 6e-69 UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=... 263 6e-69 UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax... 263 6e-69 UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=... 263 8e-69 UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9... 262 1e-68 UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=... 262 1e-68 UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=... 262 1e-68 UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=... 262 1e-68 UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=... 262 2e-68 UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=... 261 2e-68 UniRef50_UPI0001C311AF DNA replication and repair protein RecF n... 261 3e-68 UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=... 261 3e-68 UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=... 261 4e-68 UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=... 261 4e-68 UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=... 261 4e-68 UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=... 260 5e-68 UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=... 260 5e-68 UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=... 260 7e-68 UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=... 259 8e-68 UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=... 259 8e-68 UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax... 259 1e-67 UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=... 259 1e-67 UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax... 259 1e-67 UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=... 259 2e-67 UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=... 257 3e-67 UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=... 257 3e-67 UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=... 257 5e-67 UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR 257 5e-67 UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=... 256 7e-67 UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=... 256 7e-67 UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=... 255 2e-66 UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax... 255 2e-66 UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=... 255 2e-66 UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax... 254 3e-66 UniRef50_B0VFV3 Putative putative DNA repair and genetic recombi... 254 3e-66 UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=... 253 7e-66 UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax... 253 8e-66 UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=... 253 8e-66 UniRef50_UPI00016B2627 DNA replication and repair protein RecF n... 252 1e-65 UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=... 252 1e-65 UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=... 252 2e-65 UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=... 251 3e-65 UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=... 251 3e-65 UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax... 250 5e-65 UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=... 250 7e-65 UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=... 249 8e-65 UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=... 249 1e-64 UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=... 249 1e-64 UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=... 248 2e-64 UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=... 247 3e-64 UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=... 247 5e-64 UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=... 247 6e-64 UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=... 246 8e-64 UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=... 246 1e-63 UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax... 244 4e-63 UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=... 243 7e-63 UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Ta... 243 8e-63 UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=... 242 1e-62 UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=... 241 3e-62 UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=... 241 4e-62 UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=... 240 5e-62 UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=... 240 6e-62 UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=... 236 8e-61 UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=... 233 7e-60 UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=... 233 7e-60 UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=... 232 1e-59 UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=... 232 1e-59 UniRef50_D1BTA3 DNA replication and repair protein recF n=4 Tax=... 232 1e-59 UniRef50_C7JHC3 DNA replication and repair protein recF n=8 Tax=... 232 1e-59 UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=... 232 2e-59 UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=... 231 2e-59 UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=... 231 3e-59 UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 231 3e-59 UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax... 230 8e-59 UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=... 229 1e-58 UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=... 229 1e-58 UniRef50_C0R4Z7 Recombination protein F n=10 Tax=Wolbachia RepID... 229 1e-58 UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=... 228 3e-58 UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=... 224 3e-57 UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=... 223 1e-56 UniRef50_B4WQ25 DNA replication and repair protein recF n=1 Tax=... 222 2e-56 UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=... 221 3e-56 UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=... 219 9e-56 UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=... 217 4e-55 UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=... 217 6e-55 UniRef50_B9KH38 RECF protein (RecF) n=5 Tax=Anaplasma RepID=B9KH... 215 2e-54 UniRef50_A5CD18 DNA replication and repair protein n=2 Tax=Orien... 214 6e-54 UniRef50_B5IPN5 DNA replication and repair protein recF n=1 Tax=... 211 4e-53 UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=... 210 4e-53 UniRef50_A5FW24 SMC domain protein n=3 Tax=Acetobacteraceae RepI... 209 1e-52 UniRef50_C5SHV9 DNA replication and repair protein recF n=1 Tax=... 209 2e-52 UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax... 207 7e-52 UniRef50_Q3YT59 DNA replication and repair protein recF n=6 Tax=... 204 3e-51 Sequences not found previously or not previously below threshold: >UniRef50_A1T0X6 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_PSYIN Length = 359 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 174/357 (48%), Positives = 239/357 (66%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL+I FRNI +A L +P N +VG NGSGKT++LEAIY LG GR+FR+ RV Sbjct: 1 MSLSRLIIHQFRNINSATLDFNPKINVVVGPNGSGKTALLEAIYFLGLGRSFRTHLTSRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE ++F L +Q IGL K K G++ ++I+G+ K+A L +P+QLITPE Sbjct: 61 VEHESKSFTLFSEIQNNNGSIPIGLQKSKSGETLLKINGSYCKKLANLTQYLPLQLITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 G+TLL+G PK RRAFLDWG F+++P F+ WS +KRLLKQRNAAL+Q Y +L+ WD E Sbjct: 121 GYTLLSGSPKNRRAFLDWGVFYHDPIFYPNWSRIKRLLKQRNAALKQCKTYNELQIWDNE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET-EYAEVLERNFE 239 L L+E+IS R Y + + T FLP+FS+T F GW+K + L NF Sbjct: 181 LCILSEEISQQREAYFELLMPLVKQTLADFLPDFSITSQFFCGWDKNNKSLQDYLFDNFY 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT+ GP KADLR + +G PV D LSRGQLKL + ALRLAQG FL ++C++ Sbjct: 241 RDKQIGYTSAGPQKADLRFKINGIPVSDVLSRGQLKLFVYALRLAQGLFLNSFDNKQCVF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDF+SELD ++ +LA + + +Q+F+S I+AE++ + + +F VE GKIT Sbjct: 301 LIDDFSSELDQNKQQILAKHIINSNAQIFISVIAAENIDRLFGQEQTVFHVEHGKIT 357 >UniRef50_B0TLA6 DNA replication and repair protein recF n=21 Tax=Shewanella RepID=RECF_SHEHH Length = 365 Score = 331 bits (850), Expect = 2e-89, Method: Composition-based stats. Identities = 165/357 (46%), Positives = 234/357 (65%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSLTRL I FRNI A L G N + G NGSGKTS+LEAIY LG GR+FRS RV Sbjct: 1 MSLTRLHIETFRNISLAQLDPGDGLNLIYGQNGSGKTSILEAIYFLGMGRSFRSHLSQRV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H + L L E+E+ IGL + + G+++V+I+G + +++ LA +P+Q+ITPE Sbjct: 61 IQHNDDKLTLFANLSVCEQESKIGLRRFRNGETEVKINGDNIKRLSTLAETLPIQVITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F+LL GPK RR F+DWG FH++ F AW+N++R+LKQRN L+ Y Q++ WDKE Sbjct: 121 SFSLLFEGPKSRRQFIDWGAFHSDKSFHLAWANVRRILKQRNQLLKNQVSYSQIQYWDKE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L+ +EQ++ R +Y + + +FLP + SF RGW+ +T++ ++LE + R Sbjct: 181 LVRYSEQVTEIRKQYVDSLNEQLKGIIGEFLPLVEVKVSFTRGWDSKTDFGQLLETQYLR 240 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D T GPHKADLR+R PV+D LSRGQLKLL+CALR+AQG+ L +++ + +YL Sbjct: 241 DVAAGNTGSGPHKADLRLRVGVLPVQDALSRGQLKLLVCALRIAQGKLLKQQTDKNSIYL 300 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID-MSDENSKMFTVEKGKIT 356 +DD SELD + R LL +L T +QVFV+AI ++D ++ SKMF VE+G +T Sbjct: 301 VDDLPSELDAQHRKLLLQQLMDTGAQVFVTAIEPAAIVDSLATPPSKMFHVEQGCVT 357 >UniRef50_B8I3R5 DNA replication and repair protein recF n=3 Tax=Clostridium RepID=RECF_CLOCE Length = 372 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 17/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L++ ++RN + S FN G NG GKT++LEAIY GR+ R+ + + Sbjct: 1 MIVKNLVLENYRNHTNTRILFSDRFNIFYGDNGQGKTNILEAIYLCASGRSHRTSRDSEL 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+ E F + + + I ++ + +++I+ K+ L + L +P Sbjct: 61 IKFGCENFSIAVHVSKTGGLDKDIEISYYENQKKQIKINDIPIKKIGALMGNLYAVLFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR---- 175 E ++ GP RR F+D +P +F + ++LKQRN L+ ++ +L Sbjct: 121 EDLFIVKQGPTERRRFVDITLSQIKPSYFYNLQQMSKILKQRNTLLKNISSNPKLMDTVD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRG---------WE 225 W+ L +A I R +S ++ + + ++F ++ + Sbjct: 181 IWNMRLAEVAAAIIKARRTFSIMLSGMAENQHNFLTGKSEKISFDYRCSFQISGQDDTEQ 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 E Y LE++ +RD L YT GPH+ D I + ++ S+GQ + + +L++A+ Sbjct: 241 IEKLYLVQLEKSMQRDIVLGYTTVGPHRDDYDIMINDKSLKLYGSQGQQRSAVLSLKIAE 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + + + + + L+DD SELD R+ L +K Q F++ + EH ++ NS Sbjct: 301 IELVKKATNQYPVLLLDDVMSELDKNRQKYLMDSIKE--VQTFITCTNKEHFGNLLSANS 358 Query: 346 KMFTVEKGKI 355 F + G I Sbjct: 359 NFFKIVGGNI 368 >UniRef50_A4VFG0 DNA replication and repair protein recF n=25 Tax=Gammaproteobacteria RepID=RECF_PSEU5 Length = 370 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 213/360 (59%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+RL + RN+ L+ SP N L G NGSGKTS+LEAI+ LG R+FRS+++ V Sbjct: 1 MSLSRLSVTGVRNLHPVTLSPSPRINILFGDNGSGKTSLLEAIHLLGLARSFRSIRLNPV 60 Query: 61 IRHEQEAFVLHGRLQGEERETA-IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +EQ A + G+++ ++ + +G+++D+ G+ ++RIDG AELA +P+QLI P Sbjct: 61 ITYEQPACTVFGQVELPDQHSRALGVSRDRSGEVRIRIDGQSVRSAAELADTLPLQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWD 178 + F LL G PK RR FLDWG FH E F +AW L++ L+QRN+ LR T W Sbjct: 121 DSFRLLEGAPKLRRQFLDWGVFHVEHRFMSAWQRLQQALRQRNSWLRHGTLDSASDAAWS 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +EL +++I +R Y + T K L LT S+ RGW+K+ +VL + Sbjct: 181 RELSLASDEIDGYRRAYIQALKPVFETTLKALLDLDGLTLSYYRGWDKDRPLVDVLASSL 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR + +T GP +ADLR++ + LSRGQ KL++CALR+AQG ++ +C+ Sbjct: 241 ERDRAMGHTQSGPQRADLRLKVGSHNAAEVLSRGQQKLVVCALRIAQGHLVSEAKRGQCI 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN--SKMFTVEKGKIT 356 YL+DD SELD + R L L+ QVF++ + + + + E MF VE G+IT Sbjct: 301 YLVDDLPSELDAQHRLALCRLLEQLNCQVFITCVDSTVLQEGWGEQTPVSMFHVEHGQIT 360 >UniRef50_B8GSS3 DNA replication and repair protein recF n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=RECF_THISH Length = 360 Score = 328 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 192/357 (53%), Gaps = 3/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +R R + + G N + G NG+GKTS+LEAI+ L G +FR+ Q+ + Sbjct: 1 MILNRLEVRGLRILRHVRMDPVSGLNLVHGVNGAGKTSLLEAIHLLSTGHSFRTRQLSPL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + + +A + R+Q G +G+ K + + RI G + +A+LA L+P+Q++ Sbjct: 61 LAPDCDAVEVVARIQSTGGGEPWPVGIRKTRD-STTARIRGENVRSLADLARLLPLQVMH 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 PE L++GGP YRRAFLDWGCFH +P + W + LL QRNAALR + L WD Sbjct: 120 PESHLLVSGGPGYRRAFLDWGCFHTDPAYHDHWRRYRHLLCQRNAALRDRSPARLLSAWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 L + RA + + + ++ L ++RGW E +E L + Sbjct: 180 TALGEAGSALDLARATHLQTLLPYLDSLKQELPETSGLALEYRRGWNPEESLSESLAHSV 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 +RDR +T GPH+A+L R DG PV SRGQ K ++ L++AQ +L G + Sbjct: 240 QRDRSAGFTQVGPHRAELLCRLDGRPVAQVASRGQQKSVVLMLKMAQSLWLMETLGFPPV 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +ELD RG L + L+ SQVFV+AI ++ V ++ +MF VE G + Sbjct: 300 VLVDDLPAELDARHRGWLMNCLQGLGSQVFVTAIESDQVPLSGWDSWQMFHVEHGTL 356 >UniRef50_Q5QY37 DNA replication and repair protein recF n=2 Tax=Idiomarina RepID=RECF_IDILO Length = 354 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 210/358 (58%), Gaps = 5/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN L+ SP N + G NGSGKTS+LEAIY LG GR+FR ++ Sbjct: 1 MFIETLNLSHFRNFSEVALSPSPKINIITGDNGSGKTSLLEAIYLLGFGRSFRPGGFRQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ F + R ++ AIG+ + G+ +R++G + +++++A L+P+QL+TPE Sbjct: 61 IKEGNSGFTVFCR----SQDYAIGVRRSTDGEQSLRLNGANVQRMSDVARLVPVQLLTPE 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L GP RR F+DWG FH E F++ W +LLKQRN+ L+Q + + R W + Sbjct: 117 SVDILLEGPGQRRQFIDWGVFHVEHSFYSDWVAYTQLLKQRNSLLKQRSLPVREDRYWKE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L E+IS R +Y + + + K FL + ++ + GW+ + LE + E Sbjct: 177 QLAYYGERISKSREKYLEELNDYIQELAKSFLSDVTMEVRLKSGWDTSQSLFDALESHTE 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D++ +T+ G HKAD+++ ADG V+ LSRGQLK + AL+LAQG+ + + C+Y Sbjct: 237 KDKKYGFTSVGAHKADIKVIADGVEVKHRLSRGQLKTAITALKLAQGKHYQKIKRQPCIY 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 L+DD SELD + + LL L+ +QVF++AI+ + + D ++ +MF VE G I + Sbjct: 297 LVDDLTSELDSKNQALLCRELENLDAQVFITAITGKQLSDKFQKSPRMFHVEHGVINE 354 >UniRef50_A6VK88 DNA replication and repair protein recF n=6 Tax=Gammaproteobacteria RepID=RECF_ACTSZ Length = 358 Score = 323 bits (828), Expect = 7e-87, Method: Composition-based stats. Identities = 198/357 (55%), Positives = 263/357 (73%), Gaps = 1/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+++RL+I +FRN+ DL GFNFLVG NGSGKTS+LE+I+ LGHGR+F+S R+ Sbjct: 1 MAISRLIIENFRNLAAVDLEFDHGFNFLVGNNGSGKTSLLESIFYLGHGRSFKSSVSTRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDK-QGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I +++ F LHGR+ ++ E ++GL K + +G + V+I+G DG+K+++LAHL+PMQ+ITP Sbjct: 61 ITYDKPYFTLHGRIWEQQHEWSVGLQKQRKEGLTLVKINGEDGNKISDLAHLLPMQMITP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 EG TLLNGGP YRRAFLDWG FH+ P F +AWS L RLLKQRNAAL+Q Y L+ WD Sbjct: 121 EGLTLLNGGPSYRRAFLDWGLFHHRPNFHSAWSALNRLLKQRNAALQQTYDYTDLQVWDV 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 EL LA Q+S WR +Y+ + ++ TC+ FLPE + SF +GW+K T+Y ++L NF Sbjct: 181 ELSKLAHQVSLWRTDYAEALRPEIEQTCRLFLPELDIQVSFHQGWDKNTDYGDLLRENFA 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+ + YT GP KAD R +A+G PVED LSRGQLKLLMCALRLAQGE L + R C++ Sbjct: 241 RDKHIGYTVSGPQKADFRFKANGFPVEDVLSRGQLKLLMCALRLAQGEHLMVQKNRSCIF 300 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDFASELD+ +RGLLA RL+ + SQVFV+AI+AE + M EN + F+V G I+ Sbjct: 301 LIDDFASELDETKRGLLAERLRQSHSQVFVTAITAEQLKQMQPENHRTFSVNNGMIS 357 >UniRef50_Q1MXH8 DNA replication and repair protein recF n=1 Tax=Bermanella marisrubri RepID=Q1MXH8_9GAMM Length = 357 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 130/358 (36%), Positives = 207/358 (57%), Gaps = 7/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L+++ RN+ +++ SP N + G NGSGKTS LEAIY L + ++FR+ + + Sbjct: 1 MAIELLMLQGVRNLSPTNVSPSPLVNLIYGENGSGKTSFLEAIYYLAYCKSFRTHKQKNL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H Q +L + +G+ ++++G +++++G + AELA ++P+QL+ P Sbjct: 61 IQHGQNTMTGFCQLPHK----QLGVERNQEGQRRIKLNGVCLNSAAELASVLPIQLLDPT 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 F LL G P+ RR ++DWG FH EP FF W KR + RNA LR E + + W Sbjct: 117 MFRLLEGSPQLRREYIDWGVFHVEPQFFGIWKQFKRAHQTRNALLRAGGASESERKIWHS 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L LA QI++ R Y + + +T SF +GW+K+ +Y E+LE +++ Sbjct: 177 SLSDLANQITSMRIAYLERLKPLFDHYMARLNDGLGVTMSFYQGWKKDQDYYELLESSWK 236 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + YT GP +ADLRI+A+ P D LSRGQ K+++CAL+LAQ + + SG C++ Sbjct: 237 SDIESGYTKSGPQRADLRIKAENVPAMDVLSRGQQKMVVCALKLAQADLYKQVSGSPCIF 296 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM--FTVEKGKI 355 L+DD A+ELD R L L+ + QVFV+A+ + + +S++ F VE G I Sbjct: 297 LVDDLAAELDINHRKALCRLLEELKCQVFVTAVESTQIQGCWSPSSQLKTFHVEHGTI 354 >UniRef50_B5JT32 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JT32_9GAMM Length = 357 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 134/355 (37%), Positives = 197/355 (55%), Gaps = 2/355 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL +L I++ R + T ++ALSP N + G N SGKTS+LEAI+ L GR+FR+ + Sbjct: 1 MSLQQLTIQNIRRLATVEMALSPSLNVIYGLNASGKTSLLEAIHLLSTGRSFRTSRFTEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE + V+ + + IG+ + + + +++ G +V+ELA +P Q+I P+ Sbjct: 61 LSHEAKQAVVAATVHQPDGACRIGVQRSAR-EWLMKVGGERVQRVSELARWLPTQVIHPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 LL GP YRR FL+WG FH E F+ AW +R LKQRN+ALRQ WD E Sbjct: 120 SHFLLTAGPSYRRQFLNWGVFHVEHRFYPAWVRYQRALKQRNSALRQ-KDARMDGAWDSE 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L A I R EY A + + + + + +Q GW+ E A VL E+ Sbjct: 179 LSRAASFIHELREEYVADLNRILPRFVAAMMGQQEVQMVYQPGWDSEQTLATVLRDYREK 238 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 DR +T GPH+ADL + +G + +SRGQ K+L+ ALRLAQ +SG+ CL + Sbjct: 239 DRYRGHTQQGPHRADLSFKVNGYKAQAEISRGQQKMLVSALRLAQAALYQEQSGQSCLIM 298 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 +DD +ELD++ R L L QSQV V+ + AE + + + K+F VE GK+ Sbjct: 299 MDDLPAELDEKHRNALMGLLADMQSQVLVTCVEAEQIPLNAWKEYKLFHVEHGKV 353 >UniRef50_A8MEA3 DNA replication and repair protein recF n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=RECF_ALKOO Length = 365 Score = 321 bits (823), Expect = 3e-86, Method: Composition-based stats. Identities = 90/366 (24%), Positives = 171/366 (46%), Gaps = 13/366 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + ++RN E +L P N +G N GKT+++E+IY G++FR+ + Sbjct: 1 MIVEELKLINYRNYEQMNLKFHPRLNVFIGDNAQGKTNLIESIYLCSAGKSFRTNHDQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ +H +++ + I + + + ++++ K+ EL + + L +PE Sbjct: 61 INMNKKQAYIHVKVKKVHSDVHIEVRLNSERKKDLKVNQIPLVKMGELLGNLNVVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L+ GP RR F+D F+ S ++L+ RN L+ E + WD+ Sbjct: 121 DLKLVKEGPSERRRFMDREISQISTKFYYTLSQYNKILQHRNKLLKYNKGKEIDIEVWDE 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWE---------KETE 229 +L + +R + I+ ++ L ++ + + + Sbjct: 181 QLAAAGAWLIVYRRNFIKKISILAKLMHRKITESIENLEVIYEPNVKVKENDEVDVIKEK 240 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + L+ NF D+Q T GPH+ D+ ++ +G V+ S+GQ + + +L+LA+ E + Sbjct: 241 ILQNLKENFNVDKQRGLTTCGPHRDDMILKINGLDVKTYGSQGQQRTAVLSLKLAELELV 300 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E G + L+DD SELD +R+ L LK+ Q F++ E + D+ E+ +F Sbjct: 301 KGEVGEYPILLLDDVMSELDSKRQHYLIHNLKS--VQTFITTTMMETLKDLKPEDRAVFY 358 Query: 350 VEKGKI 355 V KG+I Sbjct: 359 VNKGQI 364 >UniRef50_C4Z176 DNA replication and repair protein recF n=35 Tax=Bacteria RepID=RECF_EUBE2 Length = 363 Score = 319 bits (819), Expect = 8e-86, Method: Composition-based stats. Identities = 80/363 (22%), Positives = 151/363 (41%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++DFRN E D+ + N + G N GKT++LE+IY ++ R + + Sbjct: 1 MIVESVELKDFRNYEFLDMNFNEHVNIIYGDNAQGKTNILESIYMCSTSKSHRGSKDREI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + + + I + K + ++G K EL ++ + +PE Sbjct: 61 VRFGEDESHIKLNVLKHGMKYRIDMHLKKNKTKGIAVNGIPIKKAVELFGIINIVFFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------TRYEQL 174 ++ GP RR F+D + + + N ++L QRN L+ + + L Sbjct: 121 DLNIIKNGPSERRRFMDMELSQLDKIYLSNLVNYNKVLNQRNKLLKDIAFSPSEQLMQTL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 WD +L+ I R + I ++D + ++ E + Sbjct: 181 DIWDMQLVKYGSLIIKGRKSFIEKINTIISDIHSRLTGGIENIKVCYVPDVDVNDFEEEV 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + ++D + T GPHK DL + V S+GQ + +L+L++ E + Sbjct: 241 RNSRQKDIKYKVTGKGPHKDDLIFLINDNDVRKYGSQGQQRTAALSLKLSEIELVKLVIK 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD R+ L + + Q V+ E I+ +K+F V G Sbjct: 301 DTPVLLLDDVLSELDSNRQNFLINSIG--DIQTIVTCTGLEEFINNRMNINKIFKVTDGH 358 Query: 355 ITD 357 + + Sbjct: 359 VVN 361 >UniRef50_Q2NX47 DNA replication and repair protein recF n=281 Tax=Gammaproteobacteria RepID=RECF_SODGM Length = 364 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 275/359 (76%), Positives = 312/359 (86%), Gaps = 3/359 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+RL+IRDFRNI ADL+L+ FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQ GRV Sbjct: 1 MALSRLMIRDFRNISVADLSLAADFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQSGRV 60 Query: 61 IRHEQEAFVLHGRLQGEE---RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 IRHEQ FVLHGR++ R T++GL++++ GDS VRIDG+DGHKVAELA L+PMQLI Sbjct: 61 IRHEQPEFVLHGRIEAGNVDARATSVGLSRNRLGDSTVRIDGSDGHKVAELAQLLPMQLI 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TPEGFTLLNGGPKYRRAF+DWGCFHNEP FFTAWSNL+RLLKQRNAALRQV+RY+QLR W Sbjct: 121 TPEGFTLLNGGPKYRRAFMDWGCFHNEPAFFTAWSNLRRLLKQRNAALRQVSRYQQLRVW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+ELIPLA +IS WRA+YSA IAAD+ TC QFLPEF L FSFQRGW+KE+++ E+LER Sbjct: 181 DQELIPLANRISEWRADYSAAIAADITATCAQFLPEFRLDFSFQRGWDKESDFGELLERQ 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERDR LTYTA GPHKAD RIRA+G PVED LSRGQLKLLMCALRLAQGEFLT +GRRC Sbjct: 241 FERDRALTYTASGPHKADFRIRAEGVPVEDILSRGQLKLLMCALRLAQGEFLTHRNGRRC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LYLIDDFASELD RR LLA RLKAT +QVFVSA+SA+ + D+ DE KMF VE+GKI+ Sbjct: 301 LYLIDDFASELDTGRRRLLAERLKATHAQVFVSAVSADQIRDIPDEKGKMFKVEQGKIS 359 >UniRef50_B0TAL0 DNA replication and repair protein recF n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=RECF_HELMI Length = 372 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 165/368 (44%), Gaps = 12/368 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + FRN + PG N VGANG GKT++LE+I L G + R + + Sbjct: 1 MQIQAIELAHFRNYRGLQVDFMPGVNIFVGANGQGKTNLLESIALLSGGGSHRDARDAEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ ++ + + + + I L + +++ ++A+L+ M + +PE Sbjct: 61 VQWQEAYYRIKAMGTADGQPVVIELAFGGERRKLAKVNNRRLRRIADLSETMNTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLRP 176 +L+ G P RR +LD P + S R+L QRN+ LR++ +L Sbjct: 121 DLSLVKGSPAQRRRYLDRELSQASPAYGDVLSRYARVLTQRNSLLRRLREGSATAAELEL 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE------ 229 WD +L PLA + R + A IA + + + +++ + + Sbjct: 181 WDDQLAPLAVETLARRLDGLARIAPYARQIYRGLSRDKEQIELTYRSSFPLPDDRSRWLE 240 Query: 230 -YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Y + L+ + T GPH+ DL++ +G S+GQ + + +L+LA+ F Sbjct: 241 AYRKALQERRAEEIARQATLTGPHRDDLQLFLNGRDARIYGSQGQQRSIALSLKLAEIAF 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + + + L+DD SELD +RR L S L++ QVF++ + ++ Sbjct: 301 IHQIKKEYPIVLLDDVMSELDPDRRQQLLSELESKNIQVFITTTHLHAFSPEQLGRAGIY 360 Query: 349 TVEKGKIT 356 ++ G+++ Sbjct: 361 RIQAGQLS 368 >UniRef50_B3PEM4 DNA replication and repair protein recF n=1 Tax=Cellvibrio japonicus Ueda107 RepID=RECF_CELJU Length = 365 Score = 319 bits (817), Expect = 1e-85, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 221/362 (61%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL RL + RN+E+ D+ S N + G NGSGKTS+LEAI L GR+FRS + + Sbjct: 1 MSLARLRVHHLRNLESVDIEPSSRVNLIYGLNGSGKTSLLEAINVLALGRSFRSHKHKPL 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H+Q AF + GR+ ++ E IG+ +++QG+ ++ +G + +A+LA +P+Q+I Sbjct: 61 ISHQQLAFTIFGRVLADDAAEIPIGIQRNQQGEVMLKANGANVGSIADLAIFLPVQVINS 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWD 178 + F LL G PK RR F+DW FH E F+ W +L+R LK RN+ LR+ +L WD Sbjct: 121 DTFLLLEGSPKVRRQFMDWLVFHVEHQFYPQWKSLQRCLKHRNSLLRRDRIDPFELSTWD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +EL+ L EQI +R + A ++F+ L +QRGW+K +YA+VL+ +F Sbjct: 181 QELVQLTEQIHCFREQCMALFVPVFEQLLQEFVVLEGLELHYQRGWDKHKDYAQVLQDSF 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD++L T G H+A+LRI +G + LSRGQ KLL+CAL++AQG ++ +GR+C+ Sbjct: 241 ERDKRLGVTHAGSHRAELRITLNGQDAAEILSRGQQKLLVCALKIAQGLVFSQVTGRKCI 300 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN----SKMFTVEKGK 354 YL+DD +ELD++ R L L +QVF++ + + ++ + KMF VE G+ Sbjct: 301 YLVDDLPAELDEQHRQRLVDWLYRMDTQVFITGVERQALLAGWLDKPEITPKMFHVEHGR 360 Query: 355 IT 356 ++ Sbjct: 361 VS 362 >UniRef50_B7IS23 DNA replication and repair protein recF n=88 Tax=Bacilli RepID=RECF_BACC2 Length = 375 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 168/370 (45%), Gaps = 17/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + ++++RN E +L+ N ++G N GKT+++EAIY L ++ R+ + Sbjct: 1 MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++E + G+LQ ++ L K+G +++ + K+++ +M + + PE Sbjct: 61 IRWDEEFGQIKGKLQKRNSSLSLELNISKKGKK-AKLNQLEQQKLSQYIGVMNVVMFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-----QLR 175 L+ G P+ RR FLD P + S +++L QRN L+++ L Sbjct: 120 DLNLVKGSPQVRRRFLDMELGQIAPIYLYELSQYQKVLTQRNHLLKKMQGNSKNEETMLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE----- 229 + +LI +I R E+ + A + L ++ + Sbjct: 180 VFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSK 239 Query: 230 ----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 Y E + +R+ T GPH+ DL+ + V+ S+GQ + +L+LA+ Sbjct: 240 IKEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + E + L+DD SELDD R+ L + ++ Q FV+ S + + + +++ Sbjct: 300 IELIYSEVKEYPILLLDDVLSELDDYRQSHLLNTIQGK-VQTFVTTTSVDGIEHETLKDA 358 Query: 346 KMFTVEKGKI 355 K V G + Sbjct: 359 KTIHVTNGTV 368 >UniRef50_C9KQA9 DNA replication and repair protein recF n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KQA9_9FIRM Length = 365 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 95/367 (25%), Positives = 168/367 (45%), Gaps = 14/367 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R++RN +LAL PG N +G N GKT+V+EA+Y G + R+ + Sbjct: 1 MYVRSLKLRNYRNYSELELALQPGINIFLGPNAQGKTNVVEAVYYASLGHSHRTHLDTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + + + + ++ ++G ++ EL + L +PE Sbjct: 61 IRWDAGEGCIILDFDRRGVMNHLEFQFSRAKRRRILLNGHPI-RLKELIGSINTVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLRP 176 L+ G P RR FLD P ++ R++ QRN+ L+++ L Sbjct: 120 DLFLIKGAPAGRRRFLDGEISQASPAYYHELVEFNRIISQRNSLLKRIRERRADKSMLAL 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS---LTFSFQRGWEKETEYA-- 231 WD++LI AE+I R E + ++ + +++ G + +A Sbjct: 180 WDEQLIASAEKIIRKRIEAVRKLNMLANLMQRRISSDQENLTVSYEVHGGEDMTKGFASW 239 Query: 232 --EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E+L ++ E D T++GPH DL + +G + S+GQ + + +L+LA+ EFL Sbjct: 240 YNEMLRKSQETDILRGSTSYGPHHDDLVLTVNGINLRTFGSQGQQRTGVLSLKLAELEFL 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E+G + L+DD SELD +RR L ++ + Q ++A A + + + Sbjct: 300 RSETGEYPILLLDDVMSELDVKRRQQLLQFIRRERIQTLITATDAAYFPAEGM--GRYYH 357 Query: 350 VEKGKIT 356 V+ G+IT Sbjct: 358 VQSGQIT 364 >UniRef50_Q67TK4 DNA replication and repair protein recF n=1 Tax=Symbiobacterium thermophilum RepID=RECF_SYMTH Length = 375 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 14/369 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + FRN ++ + SPG N L G N GKT++LEAI+ L GR+ R+ + + Sbjct: 1 MYLSTLQLGAFRNYDSLTIHFSPGLNVLYGDNAQGKTNLLEAIHFLATGRSHRTSRDPDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ +E + + + L Q +++I+G K+A L + + L +P+ Sbjct: 61 VQEGREELLARAAVVRRTGTIELELRCGLQTRKQLKINGIAERKIARLVGSLAVVLFSPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP-WDK 179 LL G P RR FLD + RL+ QRN L+Q E L +D+ Sbjct: 121 DLQLLKGPPSGRRRFLDLELSQISQTYLHHLMAYNRLVAQRNTLLKQPVIDEGLMAVYDE 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAE------ 232 +L+ Q+ RAE ++ + + + L ++Q + A+ Sbjct: 181 QLVETGAQLVVRRAEAVRRLSPIASRYHRMLAEDREDLELAYQSQGVGDDGAADLETVRR 240 Query: 233 ----VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L R +R+ T GPH+ D+ G S+GQ + + AL+LA+ EF Sbjct: 241 RLERELARLRSEERRRQVTLVGPHRDDVGFWVAGRDARLYASQGQQRTAVLALKLAELEF 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV-IDMSDENSKM 347 ++ E G L L+DD ASELD RR L S ++ Q F++ E + + + ++ Sbjct: 301 MSEEIGEPPLLLLDDVASELDPHRRHYLLSAVRE-GVQSFITCTDLEDLMVREWPADHRL 359 Query: 348 FTVEKGKIT 356 F V G + Sbjct: 360 FRVRAGTVV 368 >UniRef50_B0PBN6 DNA replication and repair protein recF n=2 Tax=Clostridiales RepID=B0PBN6_9FIRM Length = 379 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 20/368 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ I DFRNI + +LAL PG N + G NG GKT+ +EA++ ++FR + ++ Sbjct: 1 MRIDRIRITDFRNIASLELALCPGANVIYGDNGQGKTNFIEAVWMCTGAKSFRGAKDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + RE LT +K ++ AELA + +P Sbjct: 61 VRFGAPQAAVEAGFYAAGREQKALLTIEK--RRAAALNEVPLKSAAELAGQFCAVVFSPA 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----QVTRYEQLRP 176 TL+ GP+ +R F+D +P + + R+L QRN L+ + + ++ L Sbjct: 119 HLTLVKNGPQEKRRFIDTSICQIKPKYIHVLNQYTRVLDQRNRLLKDIMYETSLFDTLDI 178 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGW---------EK 226 WD L + RA + +A + + E Sbjct: 179 WDARLAAYGAVVIKTRATFLERLAPCAQEIYGGLAGGREKFGARYAPSLAVDPGASMSEI 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 E E L + D + T GPH+ D+ + DG S+GQ + + AL+LA+ Sbjct: 239 EQRALEDLRVHRGEDIRTRMTGAGPHRDDIDLTLDGQSARAFGSQGQQRSCVLALKLAEC 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E + G + L+DD SELD RR L + L+ Q+ +++ +S S Sbjct: 299 ELIRETRGEYPVVLLDDVMSELDAARRDYLLNHLQ--GRQIIMTSCDGSDFKGLSSGVS- 355 Query: 347 MFTVEKGK 354 +E G+ Sbjct: 356 -VRIEDGR 362 >UniRef50_UPI00016C0204 DNA replication and repair protein RecF n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0204 Length = 359 Score = 313 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 91/359 (25%), Positives = 166/359 (46%), Gaps = 8/359 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + +FRN + L+LS G N G N GKT+VLEAIY R+ R+ V Sbjct: 1 MYISTLSLTNFRNYQHLSLSLSKGINIFFGDNAQGKTNVLEAIYLCATARSHRTTSEKEV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + E +++ L + + I K+ V ++ +K+ +L ++ + PE Sbjct: 61 IKWDSENALVNLMLTKQYSLSTIDFIISKR-YKSVLVNKLPINKLTKLFGVLNVVFFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 L+ PK RR F+D + + + S+ ++LKQRN L+Q E L Sbjct: 120 NLDLIKKSPKDRRRFIDIELCQLDSMYVSQLSSYHKILKQRNCYLKQNVNNINYEFLDIL 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLER 236 D+ L A++I R+E+ + A + + L ++ + + L+ Sbjct: 180 DENLYKYAKKIFYKRSEFIENLNTKAAAIHLELSGGKEHLKLIYEPNVDINI-FKSRLKF 238 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +RD + T GPH+ D+ + ++ S+GQ + + +++ AQ + +T +G Sbjct: 239 NRDRDIRTKTTNSGPHRDDINFLMNDHSLKLFGSQGQQRTCILSIKFAQIDIITEITGET 298 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+DD SELD R+ L + Q ++ + + +++ K+F VEK I Sbjct: 299 PILLLDDILSELDINRQKYLFKYINNL--QTMITCTGVDPNLFTWNDSIKVFIVEKANI 355 >UniRef50_B8CZN7 DNA replication and repair protein recF n=2 Tax=Clostridia RepID=RECF_HALOH Length = 375 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 172/372 (46%), Gaps = 18/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ ++DFRN+ + L N VG NG GKT+ LEA+Y +G + R+ + Sbjct: 1 MYIDRIYLKDFRNLTENLIKLDNRLNVFVGLNGQGKTNFLEAVYLMGTASSHRTNADREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ V+ L + + I L +K+ + I+ +V+EL + + L +PE Sbjct: 61 IRWNQDRAVVQLYLVKRDEKLKISLEINKKVKK-LEINDVPQERVSELLGNLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-----TRYEQLR 175 L+ GP +RR FLD +P + +L QRN L+++ + L Sbjct: 120 DLKLVKEGPHFRRKFLDTELSQVKPYYHYLLKKYNHILSQRNNLLKELMTGNKSDTTLLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETE----- 229 WD++L+ + +I R E + + +Q +T S++ E Sbjct: 180 VWDEQLVEIGAKIIQNRIEVIDKLKILARLSHRQITDGLENITLSYESSLSDRIEEKELE 239 Query: 230 -----YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 + L N + YT GP + DL+I +G + S+GQ + +L+LA Sbjct: 240 EIKIIFRNKLVNNRNEEITRGYTLAGPQRDDLKITMNGIDIRKYGSQGQQRTAALSLKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EF+ E G + L+DD SELD++RR L + + Q F++A ++ +++ + Sbjct: 300 ELEFMKSEQGEYPVLLLDDVFSELDNKRRHRLIDIMAH-RVQTFITATDFFNLNEINTPS 358 Query: 345 SKMFTVEKGKIT 356 K+F V G IT Sbjct: 359 IKVFKVRNGLIT 370 >UniRef50_C7R5Z5 DNA replication and repair protein recF n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R5Z5_KANKD Length = 369 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 120/360 (33%), Positives = 206/360 (57%), Gaps = 5/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I++FRN++ + L SP N + G N +GKTS+LE+++ LGHGR+FR+ + ++ Sbjct: 1 MHIQSLSIQNFRNLQPSRLHFSPQLNIIYGNNAAGKTSILESLFILGHGRSFRTSRHSKL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +EQ++F L L + +G+ + + D VR++ K+++L L+P+Q++ PE Sbjct: 61 INYEQDSFTLFSELYSHNVQQRLGVQRFRNNDVNVRLNQEPLAKLSDLVSLIPIQVLAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + LL GP RR LDWG FH E F W +R++ QRN L+ Y+ L WD + Sbjct: 121 HYELLTKGPSGRRKLLDWGVFHVEHSFLKRWQACQRIILQRNKLLKGSLSYKDLEAWDSQ 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 LIPL++Q++ +R +Y ++ + QFLP+ L+ F +GW+ + +L + + Sbjct: 181 LIPLSDQVNQYRQDYCDSLSPYFHEIASQFLPDVQLSLEFYKGWQ-GKDLESLLVEQYLK 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D++L YT KADL+I + D LSRGQ KL+ AL+LAQ + ++L Sbjct: 240 DKKLGYTQSTIQKADLKILSGKRLAADYLSRGQQKLVTTALKLAQLRLAQERGQQYPVFL 299 Query: 301 IDDFASELDDERRGLLASRLKAT--QSQVFVSAISAEHVIDMSDE--NSKMFTVEKGKIT 356 +DD +ELD+ + LL + L + Q+F++ + + + + + N+++F VE G ++ Sbjct: 300 LDDIGAELDENHQKLLLNFLAKQPEKQQIFITCVHLDPLKSLINRYNNARLFHVEHGAVS 359 >UniRef50_A6LPB4 DNA replication and repair protein recF n=38 Tax=Clostridium RepID=RECF_CLOB8 Length = 367 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 159/362 (43%), Gaps = 9/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + ++RN + + L+ N VG N GKT++LE++Y ++ R+ + + Sbjct: 1 MYVKNINLLNYRNYKKLSVELTENVNVFVGDNAQGKTNILESVYYCAFAKSHRTSKDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E + + + I + + G ++++ +K+ EL + + + +PE Sbjct: 61 INWENSTAYISLLIGKNRLDKKIDINILRDGKKAIKVNNIKVNKIGELFGIFNVVMFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 ++ P RR LD P ++ ++L +RN L+ + + L +D Sbjct: 121 DLKVIKEAPSLRRRLLDMELSQVNPNYYFNLVQYNKVLGERNILLKSRSFSEDILDVYDI 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQ-----RGWEKETEYAEV 233 +L A+ I + R EY I ++ + + F + + + Y + Sbjct: 181 QLSKYADYIISKRLEYINKINFYGDIIHREITSGKEEINFKYNCTVNLENGKFKDNYLKK 240 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L+ N ++DR+ T+ GPH+ D + + + S+GQ + + ++ A + + + Sbjct: 241 LKDNIQKDREKGLTSVGPHRDDFSVFINNIDTKIFGSQGQQRTSILTMKFASLKIIREIT 300 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G + L+DD SELD R+ + +K Q ++ E + D D+ K+F V G Sbjct: 301 GEYPVLLLDDVLSELDLNRKKYILRSIK--DIQTIITCAGIEDLNDYLDDKVKIFNVSNG 358 Query: 354 KI 355 +I Sbjct: 359 QI 360 >UniRef50_Q15ZZ5 DNA replication and repair protein recF n=4 Tax=Alteromonadales RepID=RECF_PSEA6 Length = 363 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 132/361 (36%), Positives = 205/361 (56%), Gaps = 4/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + IR+ RN++ S G NF++G NGSGK+S+LEAI+ LG GR+FR+ + V Sbjct: 1 MKLDSVQIRNLRNLQHVTFKPSHGVNFILGINGSGKSSILEAIHYLGFGRSFRTSKHKNV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++EQE+F + + +GL++ V I+G G+KV++L L+P+Q+ TP+ Sbjct: 61 IQNEQESFTVFCECLEDSTTQRLGLSRSINDTVSVSINGIKGNKVSDLVSLLPVQIFTPQ 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ---VTRYEQLRPW 177 +L G PK RR ++DW FH E F T + RLLK NA R+ Q W Sbjct: 121 SSDILLGAPKLRRKYIDWCLFHVEHSFLTCSNAYSRLLKHNNALCRKQQVGYANPQRVYW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 L +++ +R + + QFLPEF + S+ RGWEK E E L ++ Sbjct: 181 TDLLAQYGSELTEFRNAMMTRLIPLITSNLAQFLPEFCVEISYYRGWEKGLELNEALTKS 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + Y + GPHKAD+R + G P ++ LSRGQL++L+ AL+LA + L + + C Sbjct: 241 ADRDYKNGYISVGPHKADVRFKISGKPAQEVLSRGQLRMLVAALQLATTQCLMSYTQKTC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM-SDENSKMFTVEKGKIT 356 ++L+DD +ELD +R + RL + +Q+FV+AI + + +N KMF VE G++ Sbjct: 301 IFLLDDVGAELDAAKREVFIDRLLESNTQLFVTAIEEHQLEFIDKYQNKKMFHVEHGQVR 360 Query: 357 D 357 + Sbjct: 361 E 361 >UniRef50_Q03UE1 DNA replication and repair protein recF n=190 Tax=Bacilli RepID=RECF_LACBA Length = 384 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 161/371 (43%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++ FRN TA L G N L+G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLQELQLQQFRNYPTAKLTFGQGINVLLGENAQGKTNLLEAIYVLALTRSHRTANDHDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + GR+ + LT +QG + R++ + ++++ + + L PE Sbjct: 61 VNWQAKTAKVSGRVVKAAGAVPLELTFSRQG-KRARVNHLEQARLSQYVGQLNVILFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 ++ G P RR F+D P + S + LLKQRN L+ + + L Sbjct: 120 DLAIVKGAPTVRRRFMDMEFGQMNPRYLYNLSQYRTLLKQRNRYLKDLQHKQNKDLLFLS 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKET------ 228 +L +I R + + + LTF + + Sbjct: 180 VLSDQLAAFGAEIIAQRLAMLQKLEHWAQAIHGEISQQREELTFHYATQVADDQLTDVPT 239 Query: 229 ---EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + +++ T GPH+ DL + +G V+ S+GQ + +++LA+ Sbjct: 240 ITAALSALYAKQQDKELYQGTTLVGPHRDDLHFQVNGKNVQTFGSQGQQRTTALSVKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + + E+G + L+DD SELDD R+ L + ++ Q F++ S + ++ Sbjct: 300 IDLMKEETGEYPVLLLDDVLSELDDARQTHLLTAIQDK-VQTFITTTSLSGITRQLIKDP 358 Query: 346 KMFTVEKGKIT 356 +F V +G + Sbjct: 359 TIFHVAEGTVV 369 >UniRef50_B4U113 DNA replication and repair protein recF n=70 Tax=Streptococcaceae RepID=RECF_STREM Length = 369 Score = 311 bits (796), Expect = 3e-83, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 166/364 (45%), Gaps = 12/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN + A A SPG N +G N GKT+ LEAIY L R+ R+ + Sbjct: 1 MWIKELNLTHYRNYQQASAAFSPGLNVFIGDNAQGKTNFLEAIYFLSVTRSHRTKSDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ + G L+ + + +I+ K+++ M + L PE Sbjct: 61 IYFDERDCSISGTLERLSGRVQLEILLS-DKGRITKINTLKQAKLSDYIGAMMVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--RYEQLRPWD 178 L+ G P RR F+D +P + + S+ +LKQRNA L+ V + L D Sbjct: 120 DLQLVKGSPSLRRKFMDIDLGQIKPVYLSDLSHYNHVLKQRNAYLKSVHQLDSDFLSVLD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW------EKETEYA 231 ++L+ ++ R + +A + + L+ S+Q E ++ Sbjct: 180 EQLVTYGSRVMAHRLAFVQSLAKEANKHHQAISNGLEKLSISYQASVSFEHQQEIYQQFM 239 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 + L+ +RD T GPH+ DL +G + S+GQ + L+ +L++A+ + + Sbjct: 240 DQLKTTHQRDFLRKNTGVGPHRDDLIFYINGMNA-NFASQGQHRSLILSLKMAEVSLMKQ 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 +G + L+DD SELD+ R+ L +K Q F++ S +H+ + ++ +F V Sbjct: 299 LTGDNPILLLDDVMSELDNIRQTKLLEAVKKENVQTFITTTSLKHLSQL-PKDISLFKVN 357 Query: 352 KGKI 355 KG I Sbjct: 358 KGTI 361 >UniRef50_Q2RMJ4 DNA replication and repair protein recF n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RECF_MOOTA Length = 370 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 94/356 (26%), Positives = 164/356 (46%), Gaps = 7/356 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L +L + +FR+ + PG N + G N +GKT++LEAI L R+FR Q +++ Sbjct: 6 LQQLQLINFRSYKCLTWDCRPGLNIIFGPNAAGKTNLLEAIGYLALARSFRQQQDQQLLT 65 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +F + G + + + + ++ I+G +++ EL + P+ P+ Sbjct: 66 WGASSFQVRGLCHSNGEKIELVINYQQHN-KRLTINGNR-NRLIELLGIFPVIYFGPDDL 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----QLRPWD 178 LL GGP YRR FLD + + + +R+L QRN LR + +L PWD Sbjct: 124 HLLKGGPAYRRHFLDREISMGDRLYCRNLQDYRRILFQRNLLLRAIKAGRGKEGELEPWD 183 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +L+ + I R+ + +A +A T + L ++ G + E+AE L+ Sbjct: 184 IQLLATGKAICEKRSCFLQSLAPRVAATYRDMAGGEELALIYRPGVASQEEWAERLKVGR 243 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ER+ Q T GPH+ D DG S+GQ + ++ AL+LA+ + + Sbjct: 244 EREVQAGMTLWGPHRDDFTFTLDGHEARYFASQGQQRAIVLALKLAEARYYRELLHVMPV 303 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 L+DD SELD+ +G L L Q F++ + + S ++ + +G+ Sbjct: 304 LLLDDVFSELDEAHQGALLELLAGAD-QAFLTTTEVGLLPARLIQRSHLWELARGR 358 >UniRef50_B7S2M2 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S2M2_9GAMM Length = 373 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 133/360 (36%), Positives = 192/360 (53%), Gaps = 9/360 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L+RL I RN+ L N G NGSGKTSVLEAI+ LG R+FR I ++ Sbjct: 7 LSRLQINHVRNLLGVRLEGIQRVNVFFGHNGSGKTSVLEAIHLLGMARSFRGS-IKSLVT 65 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H Q+ + G L+ R T +G+ + G+ K++I G+ VAEL +P+Q+I + F Sbjct: 66 HGQDHCTVFGALE--PRSTTLGVQRGVTGEVKIKIAGSPVRTVAELVEYLPVQVINADSF 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKEL 181 LL G P RR +LDWG FH E FF W +R +KQRN LR+V E+L W +EL Sbjct: 124 NLLTGSPGARRQYLDWGVFHVEHRFFDQWQRFQRGIKQRNKLLRRVKMPTEELAVWTREL 183 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFER 240 E +S +R Y + + Q P + L +++GW+K+ EY + LE + Sbjct: 184 AQSGEVLSGYRESYFNRLTPRFIEIMAQLAPSLTGLELRYRKGWDKQLEYQQALENSTMT 243 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D + YT GP + D+R+ +G DTLSRGQ KL++C L+LAQG+ + C YL Sbjct: 244 DIEQGYTHVGPQRGDVRVLTEGHVAADTLSRGQQKLVVCGLKLAQGQLMAEMGRGNCTYL 303 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK----MFTVEKGKIT 356 +DD SELD + L+ L +QVF++ + + + E + MF VE G +T Sbjct: 304 VDDLPSELDLQHSSLVCGLLAGMNAQVFITCVHQNDIQAVWPEEKQQELAMFHVEHGSVT 363 >UniRef50_A3DHZ7 DNA replication and repair protein recF n=3 Tax=Clostridium thermocellum RepID=RECF_CLOTH Length = 369 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 82/368 (22%), Positives = 162/368 (44%), Gaps = 16/368 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+L+++FRN + + S N + G N GKT+++EA++ GR+ R+ + + Sbjct: 1 MYIDRILLKNFRNYKDETIKFSKNLNIIYGQNAQGKTNIIEAVFLCASGRSHRTSKDTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + F + L+ E I + + V+I+ K+ L + + +PE Sbjct: 61 VNIDGTGFSVLLDLESSEGRKKIEIDYECGKKKVVKINEIPLKKIGNLMGNLLAVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 ++ GP RR F+D +P +F ++L QRN L+++ + L Sbjct: 121 DILIIKEGPSERRRFIDITLCQLKPSYFYDLQQYNKVLSQRNMLLKEIQYKRNLLDTLEV 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL-TFSFQRGW---------EK 226 WD ++ L+ +I T R+E+ + + + + E Sbjct: 181 WDYKMAELSSRIMTTRSEFIKRLCEISKKIHLKLTDGSEIMEIKYSPSVDLHDLSNPSEI 240 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 + E+ L + + + T GPH+ D + +G ++ S+GQ + + +L+LA+ Sbjct: 241 KNEFIRQLNSIRDIELKRCVTLIGPHRDDYEMELNGLNLKMFGSQGQQRTSLLSLKLAEI 300 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E + E+ + L+DD SELD +RR L ++ Q F++ E + + ++ Sbjct: 301 EIIKSETDEDPVLLLDDVMSELDFKRREFLLENIR--NVQTFITCTDKELFENRNFGDNL 358 Query: 347 MFTVEKGK 354 VE G+ Sbjct: 359 YIRVEAGR 366 >UniRef50_A9KEV0 DNA replication and repair protein recF n=6 Tax=Coxiella burnetii RepID=RECF_COXBN Length = 357 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 124/354 (35%), Positives = 185/354 (52%), Gaps = 2/354 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + FRN+ D+ FNF G NG+GKTS+LE+IY L GR+FR+ R+I Sbjct: 3 YIGSLKVNQFRNLADVDITPHSQFNFFFGQNGAGKTSILESIYYLSVGRSFRTHLPQRLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + F++ L + +G+ +D GD +RI+G + A +P+ ++ Sbjct: 63 QDNTDRFLIFITLYNGTQFIPLGVERDCHGDRCLRINGETASSWSLAAKRLPLCSLSAMS 122 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L GP+ RR FLDW FH EP FF+ W L+R LKQRNAAL+ ++ WDK L Sbjct: 123 HRFLLDGPRVRRQFLDWLMFHVEPSFFSIWQRLQRSLKQRNAALKAKLPLGEITHWDKML 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + E++ R +QFLP + L + RGW ++ E L+ N ++D Sbjct: 183 VEDGERLHQLRQNVVTEFRPLFTQMLQQFLPAYPLIGHYFRGWSEKYSLMEQLQINLKQD 242 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 Q YT GP +AD R+ P +D LS+GQ KL+ AL AQG L ++G +YLI Sbjct: 243 LQRGYTQAGPQRADFRLTLRDLPAQDILSQGQQKLVTYALHFAQGLLLKEKTGISPIYLI 302 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 DD +ELD +R + + +SQVF+S I + +S +F V+ GK+ Sbjct: 303 DDLPAELDANKRDCVIDLVNYLESQVFISGIDPNEIR--LPPHSTLFHVKHGKV 354 >UniRef50_C0EA14 DNA replication and repair protein recF n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EA14_9CLOT Length = 376 Score = 308 bits (788), Expect = 3e-82, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 170/373 (45%), Gaps = 22/373 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T +FRN++ L PG N + G N GKT+++EAI+ ++FR + R+ Sbjct: 1 MKITEFKAHNFRNLQDIVLTPDPGINLIYGQNAQGKTNLIEAIWLFSGEKSFRGNKDSRM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ L ERE + + ++ + ++ LA + +P Sbjct: 61 IWFEEQFATLSLSFDDGEREQHAQIRL--GEKNSCTLNRVEQKSLSALAGAFQCVVFSPT 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR----P 176 ++ GGP RR FLD P + +R+L QRN+ L+++ RY LR Sbjct: 119 HLAVVQGGPSLRRKFLDSAICQIRPDYHGYLGQYERVLAQRNSLLKEIARYSYLRDTIEV 178 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGW----------- 224 WD++L L ++ R +Y + + + L S+Q Sbjct: 179 WDRQLAKLGTIVTILRQDYVCKVEKFAKHSYAGISSDREQLGLSYQSTAFDSLLDHAYTQ 238 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 +K Y LE + ++D + +T G H+ DL + +G V+ S+GQ + + AL+LA Sbjct: 239 DKVDCYFSRLEESLDQDIRQGFTGIGVHRDDLELLINGLAVKTYGSQGQQRSTILALKLA 298 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + L +G + L+DD SELD R+ L + ++ +QVF++ + + ++ Sbjct: 299 EARLLKSITGNHPVILLDDVMSELDISRQDYLLNHIRE--NQVFITCCDSS--NTLRLQS 354 Query: 345 SKMFTVEKGKITD 357 ++F ++ GK+ D Sbjct: 355 GRVFHIDGGKLLD 367 >UniRef50_Q04WF5 DNA replication and repair protein recF n=33 Tax=Leptospira RepID=RECF_LEPBJ Length = 365 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 97/362 (26%), Positives = 165/362 (45%), Gaps = 8/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +++FR+ E L + F VG NG GKT++LEAI L ++FR + + Sbjct: 1 MFLKHLTLQNFRSYEELSLDFNSRLIFFVGDNGEGKTNLLEAICMLSWLKSFRESEDSNL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD--KQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E + L G+++G+++E+ + + K++ + + K +L L+T Sbjct: 61 IRWGSENYFLRGKIKGDQKESVLEVGFTAKPTVKRKLKFNQEEVKKRTDLIGKFITVLLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPW 177 P ++ GGP RR F+D +P + ++LK RNA L+ + L W Sbjct: 121 PMDLKIIEGGPAERRKFIDAFISSFDPFYLECLLEYNKILKHRNALLKTGISDASHLSIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLER 236 D++LI I R E G+ + + + L + + + E+ E L R Sbjct: 181 DRKLIEKGVLILNKRKEIVFGLNSFYQPNLNKLSGGKDELEMIYGPNVKDKDEFVEKLGR 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +D +L YT+ G H+ DL I AD + + S+GQ + + AL+ A + Sbjct: 241 NLGKDLRLGYTSVGIHRDDLFIGADKRDITEFGSQGQKRSTVIALKAATFNYYRNVLDTM 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD---ENSKMFTVEKG 353 + LIDD ELD +RR + Q F + E + D + ++F +++G Sbjct: 301 PVLLIDDVIRELDVKRREYFVDLVINAG-QAFFTTTDLEGIQDYVGKLKDQKQIFLIQQG 359 Query: 354 KI 355 I Sbjct: 360 NI 361 >UniRef50_C4V1P7 DNA replication and repair protein recF n=3 Tax=Selenomonas RepID=C4V1P7_9FIRM Length = 377 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 159/374 (42%), Gaps = 20/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R +R+ ET LA PG +GAN GKT+++EA+Y GR+ R+ + Sbjct: 1 MQITELTLRSYRSYETLHLAFDPGVQIFLGANAQGKTNIIEALYYAAFGRSHRTSSDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + + + + A+ T + ++ G + +L ++PM L +PE Sbjct: 61 IRVGADGAHIALSFRRHDVPGALSFTFARGARRRIEYAGESL-RQRDLVGILPMVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 L+ G P RR +LD P ++ R+LKQRNA L+ + + L P Sbjct: 120 DLFLVKGAPALRRRYLDAELSQASPAYYGELLRYTRILKQRNAVLKDIRERLAAPDDLLP 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET-------- 228 WD +L A I T R A + A A LT + Sbjct: 180 WDAQLAKSAAYIVTRRTSAVAQLGALSARVQSVLAAGEELTLVYDIAGAAPESGAKDDMT 239 Query: 229 -----EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 Y ++L RD T GPH DL +R G + S+GQ + AL+L Sbjct: 240 EQLYLWYNKMLREGRARDIARAATGVGPHLDDLVLRVGGMNLRSFGSQGQQRTGALALKL 299 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A+ +L G + L+DD SELD +RR L ++ Q F++A A + Sbjct: 300 AELFYLQENVGEAPILLLDDVMSELDADRRRALLDFIRHENIQTFITATDAAYFPAERMG 359 Query: 344 NSKMFTVEKGKITD 357 + VE GK+ D Sbjct: 360 TYR--YVEAGKVRD 371 >UniRef50_B2A2Y9 DNA replication and repair protein recF n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=RECF_NATTJ Length = 386 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 96/377 (25%), Positives = 163/377 (43%), Gaps = 24/377 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L +++FRN L GAN GKT++LEAIY L G++ R+ + + Sbjct: 1 MKLTELCLKNFRNYSNLKLNFKKPIILFFGANAQGKTNLLEAIYYLATGKSHRAQKEKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLT--KDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR E F L G L+ E+ + + + + ++++ M + + + Sbjct: 61 IRWETSGFYLKGELEKEQAQYTLEIITNYQNGKNKNLKVNNLSQTNTRNFLKTMNVVIFS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL---- 174 PE L+ G P RR F+D +P + N + L+QRN L+ L Sbjct: 121 PEDLMLVKGTPDNRRRFIDQEITQVDPSYDFYLKNYFKALRQRNKLLKTYQDKNTLAQHL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKET----- 228 PW+++L+ +I R E I ++ + +L + E E Sbjct: 181 PPWNQQLVHYGSKIILKREEVIHKIRLLARLIYRKITNQTENLELDYSPSLEFEDCKFRE 240 Query: 229 ---------EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 ++ L N + D + T+ GPH+ DL + + S+GQ + + Sbjct: 241 QLSGEKLAHKFLNTLNENLQSDIEKRTTSIGPHRDDLIFKINNKDARQFGSQGQQRTTVL 300 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 AL++A+ E + E G + L+DD SELDD R+ L + L + Q FV++ S E Sbjct: 301 ALKMAELEMIKGEKGEFPILLLDDVLSELDDNRKKHLLN-LTEGRVQTFVTSTSMEDFNG 359 Query: 340 MSD--ENSKMFTVEKGK 354 D S++F ++ G+ Sbjct: 360 DVDIKAKSQVFRIDNGE 376 >UniRef50_A4BD84 DNA replication and repair protein recF n=1 Tax=Reinekea blandensis MED297 RepID=A4BD84_9GAMM Length = 364 Score = 307 bits (786), Expect = 5e-82, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 201/358 (56%), Gaps = 6/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L + RN+ +A L LSPG N G NG+GKTSVLEAI+ L R+F+ + V Sbjct: 1 MAVLTLSFQGIRNLASARLNLSPGVNVFYGDNGAGKTSVLEAIHLLAMARSFKLARTRTV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + HE E ++ G L R +G+ + ++G ++R++G +A+L HLMP+QLI + Sbjct: 61 VSHELEELLVTGELGDGSR---LGVRRTQKGQVQIRLNGESLASLAQLVHLMPVQLIHSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 F LL G P RR FLDWG FH F W L++ LK RN+ LR QL W++ Sbjct: 118 SFALLEGSPGDRRQFLDWGVFHQTVAFHEDWQRLQKSLKNRNSLLRSGRIERSQLAVWER 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 E I AE+I +R +Y G D Q + L + RGW+++ EVLE+ + Sbjct: 178 EYIEAAERIDGYRKQYLEGFVPCFHDVLNQLVSLPELRIHYYRGWDRQKPLNEVLEQQRD 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD +L YT GP +AD+RI+ + D LSRGQ KL++CAL++AQ +L R+ + ++ Sbjct: 238 RDMKLGYTQSGPQRADMRIKVNKVNAADELSRGQQKLVVCALKIAQSLYLQRQQNQPTVF 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS--DENSKMFTVEKGKI 355 LIDD +ELD L + ++ QSQVF++ + + + +MF VE G+I Sbjct: 298 LIDDLPAELDHHHIQRLGALMETLQSQVFMTCVDPAPLKTFWKHPDQVRMFHVEHGEI 355 >UniRef50_D1P8T5 DNA replication and repair protein recF n=2 Tax=Prevotella RepID=D1P8T5_9BACT Length = 405 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 93/363 (25%), Positives = 171/363 (47%), Gaps = 8/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I +F+NI++A+L LSP N L+G NG GKT+ L+AIY L R+ + ++ Sbjct: 41 MILKNISIINFKNIKSANLELSPKINCLIGHNGMGKTNFLDAIYYLSFCRSAYNSIDSQI 100 Query: 61 IRHEQEAFVLHGRLQGEERETA-IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H++ F+L G ++ E + + + + + ++++ L+P+ L++P Sbjct: 101 ITHDEPFFMLEGNYDNDKGEIENVYCGMKRGTKKHFKRNKKEYKRLSQHIGLIPLILVSP 160 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPW 177 +L+ GG + RR +D + + A SN + L+QRNA L+ + L W Sbjct: 161 SDVSLIEGGSEERRKLMDVVISQYDYSYIEALSNYNKALQQRNALLKMEEEPDITILELW 220 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ++++ E + R + + +Q + + +V++R+ Sbjct: 221 EQQMASNGELLYQKRQAFVDELVPLFQQIYQQISGDKEQVRLHYVSHCQRGPLLDVIQRD 280 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE-SGRR 296 +DR + Y+ HG H+ DL P++ S+GQ K + AL+LAQ FL R S Sbjct: 281 RFKDRAVGYSLHGVHRDDLEFLLGDYPMKREGSQGQNKTFVIALKLAQFTFLQRTSSNTL 340 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAI---SAEHVIDMSDENSKMFTVEK 352 L L+DD +LD +R + + Q+F++ + ++ + +F VE Sbjct: 341 PLLLLDDIFDKLDAQRVEAIVKLVAGDHFGQIFITDTNRDHLDKILHNMQGDHTIFYVEN 400 Query: 353 GKI 355 G+I Sbjct: 401 GEI 403 >UniRef50_B3E8N9 DNA replication and repair protein recF n=2 Tax=Desulfuromonadales RepID=RECF_GEOLS Length = 368 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 175/363 (48%), Gaps = 9/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ + +RNI+ A + + L G NG GKT+ LE++Y LG+ R FR+ ++ + Sbjct: 1 MFLKQVWLEQYRNIQKACIQPARHLTVLYGRNGQGKTNFLESLYLLGNARPFRAAKVPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + + G + E+ I L + +V ID H+ A+L + + + +P+ Sbjct: 61 ISHGSRSAAVRGLVLAAGVESTIVLHVE-NSTRRVTIDDKAVHRAADLHGKLAVVVFSPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ GP+ RR +LD + ++ F + + R+LKQRNA L+ + L W ++ Sbjct: 120 DTAMVKLGPETRRRYLDRSLYASDAAFLSDYHTYYRILKQRNALLKTNQQAG-LDLWTEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQR------GWEKETEYAEV 233 L ++ R Y++ + + +Q + ++ +Q V Sbjct: 179 LATAGIRLMQHRQHYTSRLNQLLQQKYQQIAGEQEKVSVVYQPDVICTAEENGTELLLNV 238 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 E+D + T GPH+ DL P++ S+GQ + + AL++A+ + L Sbjct: 239 FRNQHEQDLRYKSTGRGPHRDDLLFSIGDRPLKSFGSQGQQRSFVLALKMAELDHLQETF 298 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G L L+DD ASELD ER L S ++ + QV ++ + + ++SK+F VE+G Sbjct: 299 GEMPLLLLDDIASELDRERMTNLLSYVRQREVQVLITTTDVTPFLPVLQQDSKLFRVEEG 358 Query: 354 KIT 356 ++T Sbjct: 359 RLT 361 >UniRef50_Q39ZS1 DNA replication and repair protein recF n=6 Tax=Geobacter RepID=RECF_GEOMG Length = 365 Score = 306 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 100/365 (27%), Positives = 165/365 (45%), Gaps = 11/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T++ I FRNI A++ FN L GANG GKTSVLEAIY LG ++FR + + Sbjct: 1 MFVTKIQISSFRNIAAAEIRFDRRFNVLHGANGQGKTSVLEAIYLLGTMKSFRLAKTPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + +L G + + I L K+G R+D ++A+ + + +PE Sbjct: 61 VSWNTPHALLRGWAERDGVGREIALYLGKEGRK-ARVDQKPVTRLADFFGNVNAVVFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + GP RR +LD F + G+ RLLKQRNA L++ +R E L W + Sbjct: 120 EIAMARSGPDLRRRYLDRAIFSGDLGYLLLHHEYHRLLKQRNALLKRGSR-EGLDIWTGQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQR--------GWEKETEYA 231 L ++ R Y A I + ++ E +++ E Sbjct: 179 LAEAGTRLMVKRMGYLAEIEPLVQRFYREIAGGEEEAGLAYRPHLTTPDLVSREGTDALL 238 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 + + + + T GPH+ D+ +G + S+GQ + + AL++A+ E+L R Sbjct: 239 ALFGAHEAEELRRGTTVVGPHRDDVDFVLNGRVIRTHGSQGQQRSFVLALKMAEIEYLER 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + + L+DD +SELD +R L + L+ + QVF++ + F V Sbjct: 299 LNDAPPVLLLDDISSELDPQRNANLMTFLREKRMQVFITTTDVSTLRLAGIATHASFHVS 358 Query: 352 KGKIT 356 +G +T Sbjct: 359 RGTVT 363 >UniRef50_Q4LAL2 DNA replication and repair protein recF n=85 Tax=Bacillales RepID=RECF_STAHJ Length = 371 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 86/371 (23%), Positives = 162/371 (43%), Gaps = 18/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + ++RN E L P N L+G N GKT++LE+IYTL ++ R+ + Sbjct: 1 MKLKTLQLENYRNYEEVTLECHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E + G L + + K+G +V+++ + ++ + + + L PE Sbjct: 61 IRFNSEYAKIEGVLNYRHGTMPLTMFITKKG-KQVKVNHLEQSRLTQYVGHLNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLR 175 ++ G P+ RR F+D + + +R+LKQ+N L+Q+ L Sbjct: 120 DLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQKNNYLKQLQLGQKQDTTMLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKET------ 228 +++ A ++ R + + + +L+ ++ + Sbjct: 180 VLNQQFAQYALNVTLRREHFIKELESLAKPIHAGITNERETLSLTYLPSIKLSDMSKGEQ 239 Query: 229 ----EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E +L N +R+ GPH+ DL + + S+GQ + +++LA Sbjct: 240 TLWDEVITLLNDNIKREMDRGVCLFGPHRDDLGFNVNDMDAQTYGSQGQQRTTALSIKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + E G + L+DD SELDD R+ L S ++ Q FV+ S + + N Sbjct: 300 EIELMNIEVGEYPILLLDDVLSELDDSRQTHLLSTIQHK-VQTFVTTTSVDGIDHEIMNN 358 Query: 345 SKMFTVEKGKI 355 +K++ + +G+I Sbjct: 359 AKLYRINQGEI 369 >UniRef50_B0K0X1 DNA replication and repair protein recF n=11 Tax=Thermoanaerobacterales RepID=RECF_THEPX Length = 362 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 81/366 (22%), Positives = 155/366 (42%), Gaps = 18/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN++ + G N G N GK+++LE+I L GR+FR + + Sbjct: 1 MYVKELFVDNFRNLQKQKIEFCEGINIFYGLNAQGKSNLLESIRLLSMGRSFRGSKTTEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ F + + E + I K + ++++G +EL + + +PE Sbjct: 61 IKFGEDYFYVKAIICQENNDKKIEFGYKKNENKVIKVNGNKIKSTSELLGQLLTVIFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL---RQVTRYEQLRPW 177 ++ GP +RR +LD E + ++L RN L ++ L + Sbjct: 121 DLNIIKEGPSHRRKYLDSCISVVEKNYLYNLMQYNKILMNRNKLLKSIKEGKSKSILEIF 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEK-------ETE 229 D +L+ +I R Y + ++ + + + G + + Sbjct: 181 DDQLVEYGAKIIVMRQNYLKNVEINIKKFLLEISNETAEIVYLNSVGLKDASDEEIVKKR 240 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L +N + D + T GPH+ D +I +G S+GQ + L+L++ E L Sbjct: 241 LKEKLSKNIDVDLRYFTTQVGPHREDFKIIINGYDSRVYSSQGQQRTAALCLKLSEFEIL 300 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E+ + + L+DD SELD+ R+ + RLK Q F++ + + F Sbjct: 301 KKETSEKPVLLLDDVMSELDENRKKYVLERLKGF--QTFITHTTKRDLKGD-----CYFK 353 Query: 350 VEKGKI 355 + G + Sbjct: 354 ISNGVV 359 >UniRef50_Q18C86 DNA replication and repair protein recF n=5 Tax=Clostridium RepID=RECF_CLOD6 Length = 371 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 95/366 (25%), Positives = 161/366 (43%), Gaps = 14/366 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN + L + N LVG NG GKT+++E+IY L G++FR+ + + Sbjct: 1 MKLKSLQLVNFRNYKKLHLEFNGKVNLLVGKNGQGKTNIVESIYMLSFGKSFRTNKDKEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E + G + + I L K +RI+ K+ EL + + + +PE Sbjct: 61 VRFNSENLYIGGSFSKYNKYSLIELIIGKD-KKGIRINKVPLQKIQELLGNLNVVIFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L+ GPK RRAF+D P ++ +N + L QR+ L+ + E L +D Sbjct: 120 DLRLVKEGPKERRAFIDKEISQIIPKYYKYLTNYNKTLSQRSRVLKNIHVDEALLDVYDD 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE--------- 229 L I R ++ IA + L+ ++ E Sbjct: 180 TLAKYGSYIYILRRDFIKKIANISENMHMNLTNGVERLSIRYKNQINITDEDTIDTVYNK 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + L N D + T +G HK DL I + S+GQ + +L+L++ E + Sbjct: 240 FLAKLSSNRPNDIESKTTRYGIHKDDLNIFINDLDARLFGSQGQQRTASISLKLSEIELI 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 E + ++DD SELD+ R+ LL + L Q+F+++ H ++N +F Sbjct: 300 KNEVEEYPVLILDDVFSELDEARQKLLVNNLS--NVQMFITSAEVSHKKIFDEKNVTIFN 357 Query: 350 VEKGKI 355 +E G + Sbjct: 358 IENGDV 363 >UniRef50_A6VR67 DNA replication and repair protein recF n=2 Tax=Marinomonas RepID=RECF_MARMS Length = 368 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 135/360 (37%), Positives = 197/360 (54%), Gaps = 5/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL I RN+ + SP N +VG NGSGKTSVLEAI+ L GR+FRS + Sbjct: 1 MPLVRLDISHVRNLSSVRFEPSPQVNVIVGKNGSGKTSVLEAIHLLSFGRSFRSHKHKTY 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+HE +A ++ +L Q + +GL + + G VRI G V ELA +P+QLI P Sbjct: 61 IQHENDACIVFAQLHQKQGSPIRVGLQRHRDGQIDVRIQGQRAQSVIELAERLPVQLINP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPWD 178 + F LL G P RR F+DWG FH + F AW ++ LKQRN LR+ L +D Sbjct: 121 DAFRLLEGSPSIRRQFIDWGAFHFDKDFIQAWRGWQKALKQRNTLLRRGKISLSLLAAFD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 +ELI L EQ++ R Y + E S++ F +GW+ + A +E Sbjct: 181 QELIRLGEQVNQSRKAYVEKLTPHFVKVLSLLTTELSVSLQFFQGWDAQKNLAMAVEAGR 240 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GP +ADLR++ DTLSRGQ KL++ AL++AQG+ L GR + Sbjct: 241 ERDIELGYTHTGPQRADLRVKTATGDALDTLSRGQQKLVVSALKIAQGQLLIDM-GRPLV 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE--HVIDMSDENSKMFTVEKGKIT 356 +L+DD +ELD R L L++ SQ+F++++ + + + F++ G+++ Sbjct: 300 FLVDDLPAELDANHRQKLCQLLESLNSQIFITSVEPDTTDFTWADTTDVRQFSMTNGELS 359 >UniRef50_D1BQ80 DNA replication and repair protein recF n=3 Tax=Veillonella RepID=D1BQ80_VEIPT Length = 366 Score = 303 bits (775), Expect = 8e-81, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 163/365 (44%), Gaps = 14/365 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + + +P L G NG+GKT++LE+IY G++ R+ + Sbjct: 1 MRIDSLQLFQFRNYKDVQIQFNPEIIVLHGTNGAGKTNILESIYVGTIGKSHRTNDTSDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + + + ++ + + +QG +R++ T EL + + PE Sbjct: 61 LMFNAEEAGIVVKFEKKDTPQKVNIKLFRQGAKDIRLNDTKI-SQKELIGTLNTVIFCPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ--LRPWD 178 L+ G P RR FLD ++ RLL+QRNA L++ L WD Sbjct: 120 DLQLIKGTPSGRRRFLDMEISQTSATYYHQLMQYNRLLQQRNAVLKEYRGKNTIPLEEWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK-------ETEY 230 +L +A I R E I + ++ LT +++ + + + Sbjct: 180 LQLADMASFIVKKRLESLKKINLLIDLMNRKLTGGLENLTIGYEQPYMDNGSLEYTKEGF 239 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 E ++ +DR T+ GPH+ DLR +D ++ S+GQ + + +L+L++ EF+ Sbjct: 240 YERIKAALPQDRHRLSTSVGPHRDDLRFFSDAMDLKKFGSQGQQRTAVLSLKLSELEFIK 299 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 E G + L+DD SELD+ RR L + + Q F++ D+ ++ + + Sbjct: 300 SEVGEYPVLLLDDVLSELDESRRVNLLQFI-HKRIQTFITTTDIHDFKDL--KSVQFISC 356 Query: 351 EKGKI 355 E G + Sbjct: 357 EGGNV 361 >UniRef50_Q3JF36 DNA replication and repair protein recF n=2 Tax=Nitrosococcus oceani RepID=RECF_NITOC Length = 363 Score = 303 bits (775), Expect = 9e-81, Method: Composition-based stats. Identities = 125/361 (34%), Positives = 191/361 (52%), Gaps = 5/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L IR+FRN++ +L S G N L GAN SGKTS LEAIY LG GR+FR++Q+ Sbjct: 2 MHITHLDIRNFRNLKHIELHPSKGVNILSGANSSGKTSFLEAIYLLGLGRSFRTVQLISA 61 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E+ + +++ G+ G + RI+ K ++LA +P+ ++ Sbjct: 62 IQAGMESLRVVAKVKQVGGSHTAGVEFGPAG-FRARINKDTVKKRSQLATQLPLLYMSSY 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--EQLRPWD 178 +L+GGP+YRR +LDW FH EPGF W +R LKQRN LR +++ W+ Sbjct: 121 SHVVLDGGPRYRRQWLDWSLFHLEPGFHDLWWCYQRTLKQRNHVLRVHKPSWQQEINAWN 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE--FSLTFSFQRGWEKETEYAEVLER 236 K+L EQI++ R + ++ + +T F++GW + E+L Sbjct: 181 KKLSTYGEQITSLREAILFKLQDSVSQLFTALAHQPISPVTMEFKQGWARTVRLEEILNE 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + DR YT +GPH+A++ DG V + LSRGQ K+ +L L+Q L R + Sbjct: 241 SLNYDRAAGYTRYGPHRAEVAFYVDGKDVREILSRGQQKVFCYSLALSQANLLYRTKEQN 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 C++LIDDF SELD + R L + L QVF + I + + N K F V+ G++ Sbjct: 301 CIFLIDDFTSELDADHRKRLLTLLNKLGMQVFATTIESLGSEIKAHPNIKEFHVKLGQVE 360 Query: 357 D 357 + Sbjct: 361 E 361 >UniRef50_C8VVA0 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VVA0_DESAS Length = 376 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 91/375 (24%), Positives = 159/375 (42%), Gaps = 20/375 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L I +FRN ++ + N +G N GKT++LEAI L GR+FR+ + Sbjct: 1 MRIKELFINNFRNYKSLHIKPKENLNIFIGDNAQGKTNILEAICFLLQGRSFRTSHEKEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E L L+ + +I ++ + ++I+ + K ELA + TP+ Sbjct: 61 INFDSEQSKLKTELKAYNQNYSIDISLSRTKPKIIKINNSTTSKP-ELATNFGTIVFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQL 174 +++ G PK RR FLD P + + N +++L QRN L+++ + L Sbjct: 120 QLSIIKGSPKERRRFLDLELASFYPQYKYYFVNYQKVLLQRNNLLKELKEKKQADTFDLL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETEYAEV 233 WD +LI +I R E + Q + LT ++ + + E Sbjct: 180 ELWDNQLISYGAKILMARMEILKKLIPMAQQIHNQITSDKEKLTIRYRSSLNLNSNFREE 239 Query: 234 L---------ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 L +N ++D T GPH+ DL + + D S+GQ + ++ L+ A Sbjct: 240 LIYDQFREVILKNRQQDYLKGQTTVGPHRDDLVFLINNKNITDFGSQGQQRTIILTLKFA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + E + L+DD ELD +R+ + L QVF+++ + Sbjct: 300 IINLWSCELNDVPVLLLDDVFFELDSKRQKYIFDLL-NKDVQVFITSTGMANTEKNLINI 358 Query: 345 SK--MFTVEKGKITD 357 K +F V G + + Sbjct: 359 KKNAIFNVRSGLVCE 373 >UniRef50_A8YW44 DNA replication and repair protein recF n=17 Tax=Lactobacillaceae RepID=RECF_LACH4 Length = 375 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 83/372 (22%), Positives = 165/372 (44%), Gaps = 18/372 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++++FRN++ D+ P N +G N GKT++LEAIY L R+ R+ + Sbjct: 1 MYLDHFVVQNFRNLKKLDIDFDPNVNIFIGKNAQGKTNLLEAIYFLALTRSHRTNSDKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E L G ++ + + + + ++G V I+ + K+++ + L +PE Sbjct: 61 IGFGGEYTNLLGHVRKSQVDLTLRVLITQKGKK-VWINRVEQAKLSKYVGQLNAILFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ P RR F+D + S +++L Q+N L+Q+ + + L Sbjct: 120 DLELIKSAPALRRRFMDQEFGQINAEYLYFASKYRQVLLQKNNYLKQLAKGKTKDQVFLD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRG----------W 224 +L +A ++ R ++ ++ +D L L ++ Sbjct: 180 VLSDQLAGIAAEVIFRRFKFLRYLSHYASDVYAHISLGGEKLAIAYHPSVSTIEADDTVE 239 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + ERN + + T GPH+ D+ + DG S+GQ + + +++LA Sbjct: 240 EIYQKILANFERNKAVEMRKGTTTSGPHRDDIEFKLDGKNAHLYASQGQQRSIALSVKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + + + + + L L+DD SELD R+ L + + +Q F++ E + + Sbjct: 300 EIQLVHQLTDEYPLLLLDDVMSELDHTRQSALLNYIHGK-TQTFITTTDLEGISWEIIKK 358 Query: 345 SKMFTVEKGKIT 356 +++ ++ GKI+ Sbjct: 359 PRVYHMQSGKIS 370 >UniRef50_Q1DFP6 DNA replication and repair protein recF n=2 Tax=Cystobacterineae RepID=RECF_MYXXD Length = 380 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 152/369 (41%), Gaps = 15/369 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + DFRN+ L S VG NG GKT++LEA+Y L + R+ ++ + Sbjct: 1 MRLLALHVHDFRNLPQVQLTPSAHATIAVGQNGQGKTNLLEALYFLATLKPLRAGRLSEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + + GR + E I + G + +DG + + + + TP+ Sbjct: 61 VRWGSQGARVTGRFLLKGAEREIAVEVG-GGTRQAFVDGKKASSLEDYFGGVSVVAFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--QLRPWD 178 ++ GGP RR FLD F+ P F R LK RN LR+ + L +D Sbjct: 120 DLEVVKGGPDSRRGFLDRAVFNRFPAFLRESREYARALKNRNRLLREGHTVDAVYLEAYD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEY-------- 230 + L +I + R A +A T R E ++ Sbjct: 180 ETLAKAGARIYSRRRALMAELAPRAQATFASIGRTVDPAVYNYRPAHLEGDFAAADETAL 239 Query: 231 ----AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 E L RD + +T+ GPH D+ + G S+GQ + L+ ++A+ Sbjct: 240 AAMLRESLSARLRRDMERGFTSVGPHSDDVSVTLGGRSARAYASQGQQRALVLGWKIAEI 299 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E L G L L+DD +SELD ER L L + +QV ++ V + +++ Sbjct: 300 ENLEAAMGFLPLLLLDDVSSELDPERNAYLMGYLAQSGAQVVLTTTDGSLVRGAAADDTL 359 Query: 347 MFTVEKGKI 355 V G++ Sbjct: 360 WLDVHGGQV 368 >UniRef50_B9M7S3 DNA replication and repair protein recF n=1 Tax=Geobacter sp. FRC-32 RepID=RECF_GEOSF Length = 364 Score = 301 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 180/364 (49%), Gaps = 11/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ ++ FRN++ L + FN G NG GKT++LE+I+ + ++F++ + + Sbjct: 1 MKLNKIYLQSFRNLQETMLMPAQHFNIFYGNNGQGKTNLLESIFIMATMKSFKTARSSDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + +L G ++ + I + D QG +R+D ++ + + + + TPE Sbjct: 61 VRWGAISSLLKGWVERDGVTREIAVFLDNQGKK-IRVDQKAVTRIDDFFGHLNVVVFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P+ RR +LD F ++ + + + ++LK RN L++ + W ++ Sbjct: 120 EVNMVKGLPELRRKYLDRAVFSSDITYLSVYHAYSKILKNRNMLLKRGEKAS-FDIWTEK 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRG--------WEKETEYA 231 L+ + I R Y + + ++ + S++ + +A Sbjct: 179 LVEQGKNIILSRLAYLDALRDLLKRFYREISGNEEAVDISYRPYHMDLADCRGDVADAFA 238 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + + + T GPH+ D+ +G P++ S+GQ K + AL++A+ E+L + Sbjct: 239 EALAKTATEEERRGTTLAGPHRDDVEFILNGRPLKQFGSQGQQKSYVLALKMAETEYLQK 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + + ++L+DD +SELD ER+ L LK QVF++ S +++ EN + + +E Sbjct: 299 KFHSQPIFLLDDLSSELDQERKKNLMEFLKKRDMQVFITTTSLQNINVDEIENYRTYRIE 358 Query: 352 KGKI 355 +GK+ Sbjct: 359 EGKV 362 >UniRef50_C4FYE1 DNA replication and repair protein recF n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FYE1_9FIRM Length = 384 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 90/371 (24%), Positives = 162/371 (43%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN + +L L PG L G N GKT++LE+I+ L ++ R+ + Sbjct: 1 MKLKTLKLSHFRNYQGIELCLGPGLTILTGENAQGKTNLLESIFLLSLAKSHRTNHDSEM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +QE + ++ + E + LT K+G +++ D K++ L PE Sbjct: 61 IEWDQEQARIEAVIETKNYEIPLALTLTKKG-KVAQVNYLDQSKLSHFVGQFNTVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR----- 175 L+ G P RR FLD P + +RLLKQRN+ L+Q R ++ Sbjct: 120 DMQLIKGAPNLRRRFLDIELGQANPIYLNHLLTYQRLLKQRNSYLKQEGRGKKFDQVFFE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRG---------WE 225 ++L + +R E+ + + + L + G E Sbjct: 180 ILTEQLCQEGAHLIQYRMEFLEKLGQIASPIHQNLSNGRDQLRLEYINGSQVYQPLSLEE 239 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + + R+R T GPH+ D + + S+GQ + ++ +L+LA+ Sbjct: 240 RIKQLLDQASTYASRERDQGTTLFGPHRDDFMTYVNDKKAQFFGSQGQQRTIVLSLKLAE 299 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E + + G + L+DD SELDD+R+ +L S +K Q ++ + + + ++ Sbjct: 300 IELIKQARGEYPVLLLDDVLSELDDDRQHILMSYIKDK-VQTILTTATIKGLKLHQLPHA 358 Query: 346 KMFTVEKGKIT 356 ++F + G I+ Sbjct: 359 EIFYISAGNIS 369 >UniRef50_A4BTW3 DNA replication and repair protein recF n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BTW3_9GAMM Length = 357 Score = 299 bits (767), Expect = 7e-80, Method: Composition-based stats. Identities = 126/357 (35%), Positives = 192/357 (53%), Gaps = 2/357 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + FRN+ L P NF+ G N SGKTS+LEAI+ L GR+F S+ ++ Sbjct: 1 MTLARIEVEAFRNLRGVVLTPDPRVNFIWGNNASGKTSLLEAIHWLARGRSFLSVHSDQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR AF L +Q R T +G+ + G ++VR +G D ++E+A L+P +I E Sbjct: 61 IRQGCRAFTLGASIQVPPRTTWLGMERTP-GRTRVRCNGQDIWNLSEIAWLLPTHVINTE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L G P+ RR+ LDWG FH E + W +R L+QRNAALR + R W+ + Sbjct: 120 SQRLFVGAPQERRSLLDWGVFHVEHSYQGRWRRYQRALRQRNAALRTG-DSQLARAWEAD 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L+ AE + + R Y + +++LPE L + FQ GW + + VL + R Sbjct: 179 LVTAAEAVDSSRRCYLNALWPHWHAFIEEWLPELELHWDFQSGWPRRDDLRGVLAQARGR 238 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 + + +T +GPH+ DLR A LSRGQ KL ALRLAQ E + +R + L Sbjct: 239 ELERGHTLYGPHRGDLRFIAGDVGAAQRLSRGQQKLAAIALRLAQAELTLKNGQQRPVIL 298 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 +DD A+ELD R + ++L +Q+ ++A+S ++ D ++F VE+G + Sbjct: 299 VDDLAAELDAGHRERVLAKLLRMDAQLLLTALSQNELVLPGDGRFRVFHVEQGCYCE 355 >UniRef50_A6L3K9 DNA replication and repair protein recF n=31 Tax=root RepID=RECF_BACV8 Length = 371 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 90/365 (24%), Positives = 172/365 (47%), Gaps = 8/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R+ I +++N+E A+L SP N +G NG GKT++L+A+Y L ++ + + Sbjct: 1 MILKRISILNYKNLEQAELEFSPKMNCFIGQNGMGKTNLLDAVYYLSFCKSATNPIDSQN 60 Query: 61 IRHEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 IRHE E FV+ G + ++ E + ++ + + + + +++++ +P+ +++P Sbjct: 61 IRHEGEFFVIQGFYETDQGEPEEVYCGLKRRQKKQFKRNKKEYNRLSDHIGFIPLVMVSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR--QVTRYEQLRPW 177 L+ GG RR F+D + + A + L QRNA L+ Q E + W Sbjct: 121 ADAELIAGGSDGRRRFMDVVISQYDKEYLDALIRYNKALTQRNALLKSEQEFDEELMLVW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ++ + E + R+E+ A + ++++ + Sbjct: 181 EEMMASAGEVVFKKRSEFIAEFIPTFQSFYSYISQDKEKVNLAYESHAMSGGLLDIIKES 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG-RR 296 RDR + Y+ G HK DL ++ P++ S+GQ K + AL+LAQ +FL + G Sbjct: 241 RRRDRVMGYSLKGVHKDDLIMQLGDFPIKREGSQGQNKTYLIALKLAQFDFLKKTGGNTT 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAI---SAEHVIDMSDENSKMFTVEK 352 L L+DD +LD R + + + Q+F++ + ++ + K+F VE Sbjct: 301 PLLLLDDIFDKLDAFRVEQIVKLVAGDRFGQIFITDTNRDHLDKILKKIEREYKVFAVED 360 Query: 353 GKITD 357 G++T+ Sbjct: 361 GEVTE 365 >UniRef50_Q21PV3 DNA replication and repair protein recF n=1 Tax=Saccharophagus degradans 2-40 RepID=RECF_SACD2 Length = 367 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 133/363 (36%), Positives = 203/363 (55%), Gaps = 9/363 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L+ L ++ FRN+ D+ SP N + G NGSGKTS+LEAI L H R+FR+ + R+I Sbjct: 3 HLSNLKVQQFRNLGLVDITPSPTLNLVYGENGSGKTSLLEAISVLAHCRSFRTHKYRRLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + AF + ++G + +G+ ++ G S ++DG A+LA +P+Q+I Sbjct: 63 QDTTTAFTVFATVEGSDA-FKVGVQREWSGKSTAKLDGLSAKSSAQLATNLPVQIIDAHT 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPWDKE 180 F LL GG K RR F DW FH + F TAW+N + +KQRN+ LR LRPWD++ Sbjct: 122 FALLEGGSKARRKFFDWLVFHVKHEFKTAWANYVKCVKQRNSLLRHDKIAYSDLRPWDEQ 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQ--FLPEFSLTFSFQRGWEKET-EYAEVLERN 237 + LA I R E + + F LT ++Q GW++ + + LE+ Sbjct: 182 IAGLAATIDECRVECITPLIQAFKALMGECKFADNVDLTLAYQPGWKEGELSFPKQLEQA 241 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F RDR+L YT GPHK+DL+I A+G+P + LSRGQ K ++ AL +A+ + + GR Sbjct: 242 FARDRKLGYTILGPHKSDLKITANGSPAVEVLSRGQQKAVINALHIAEAQVYKTQIGRTP 301 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS----DENSKMFTVEKG 353 ++L+DD SELD +L+ L +QVFV+ + A + + +E KMF V++G Sbjct: 302 VFLLDDMPSELDANHIAILSGWLSNLGAQVFVTGVDANKLASVWPLQKNEAIKMFHVKQG 361 Query: 354 KIT 356 ++T Sbjct: 362 EVT 364 >UniRef50_B2SG84 DNA replication and repair protein recF n=18 Tax=Francisella RepID=RECF_FRATM Length = 349 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 129/350 (36%), Positives = 191/350 (54%), Gaps = 1/350 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L +++FRNI NF+VG NGSGKTS+LE+IY L H R+FRS Q+ R+ Sbjct: 1 MYISNLRLQNFRNIHAKSFDFKNSINFIVGKNGSGKTSILESIYFLSHSRSFRSSQLNRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + F+++ + + E I L++ K ++ +++ E+ +P+QLI PE Sbjct: 61 INHNADEFIIYTKAYNPD-EITISLSRKKNSNNISKLNLEIQKNHTEITRNLPIQLINPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F ++N G + R LDWG F+ + F W K L+KQRN+AL+Q Y + DK+ Sbjct: 120 SFNIINSGAQQRCKVLDWGAFYLDKTFLKIWQQTKFLVKQRNSALKQNYPYSYILSIDKK 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L AE + R Y + + + F P L + RGW A+VLE +F Sbjct: 180 LCEFAEILDYKRQAYFTKLKPKIYEILSHFNPNLQLDIDYFRGWNLHKSLAQVLEESFNY 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D + T HGPHKAD+ + P++D SRGQ KLL+CAL+LAQGE E+ +C+YL Sbjct: 240 DNKYKVTNHGPHKADIVLSVSHKPIQDIFSRGQQKLLICALKLAQGEIHNSENDNKCIYL 299 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 IDD SELD L + LK +SQVF++ + + D NS + + Sbjct: 300 IDDITSELDSIHTLTLFNYLKQLKSQVFITTTEKNKINEFIDTNSYILEI 349 >UniRef50_B0N231 DNA replication and repair protein recF n=4 Tax=Bacteria RepID=B0N231_9FIRM Length = 365 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 88/364 (24%), Positives = 167/364 (45%), Gaps = 12/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN + N L+G+NG GKT+++EAIY L G++F++ ++ Sbjct: 1 MKVNSLCLDNFRNYNHFFIEFDRDINILIGSNGQGKTNLIEAIYLLSVGKSFKTHINKQM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E + G + + ++ + + +ID D +K++E L+ + + P+ Sbjct: 61 IMFDCEFAKVKGEVTSNNKLRSLEMILGSDF-KRAKIDDQDIYKISEYVGLLNVVVFVPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQLR 175 L+ G P RR F+D P + S LLK+RN L+ E L Sbjct: 120 DLYLIKGSPNNRRRFIDLELSKISPIYVFNLSKYNNLLKERNKYLKILNQKNRDGDEYLE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL--PEFSLTFSFQRGWEKETEYAEV 233 D+++ L ++ R ++ + + ++ + ++E Y + Sbjct: 180 VLDEQMARLQVELIKKRIDFIKNLNQKVTSIYNLIAKNDNEKISLRYSCFLKQELTYENI 239 Query: 234 L---ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 L ++N +RD + + G HK DL+I +G + S+GQ + ++ +L++A E + Sbjct: 240 LALYKKNHQRDIRYMQSHLGIHKDDLKIFMNGNAADLFASQGQQRTIVLSLKIALIELIK 299 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 E G + L+DD SELD+ R+ +L L Q F++ S + + E +K + Sbjct: 300 DEIGEYPVLLLDDVLSELDEARKNMLLDILNQK-IQTFITTTSIDGINHQIVEKAKKIYI 358 Query: 351 EKGK 354 + GK Sbjct: 359 KGGK 362 >UniRef50_Q2BQF9 DNA replication and repair protein recF n=1 Tax=Neptuniibacter caesariensis RepID=Q2BQF9_9GAMM Length = 363 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 128/360 (35%), Positives = 202/360 (56%), Gaps = 6/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS++ L I++ RNI + A S N + G NGSGKTS+LEAI LG R+FR+ + + Sbjct: 1 MSISNLQIKNLRNISSISFAPSSAINIICGENGSGKTSILEAINVLGLTRSFRTNKARHL 60 Query: 61 IRHEQEAFVLHGRLQ--GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 ++ EQ + V+ + + + ++G+ + +G++++R +G D ++ LA L+P+Q+I Sbjct: 61 VQTEQASTVVFASIDPMAQGFKQSLGVERPVEGEARIRFEGGDID-LSTLAELIPLQVIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPW 177 + F LL G P RR FLDWG FH + F W +R+LKQRN L+ QL + W Sbjct: 120 SDTFMLLEGSPAVRRQFLDWGVFHADKAFIQLWRGFRRVLKQRNTLLKCGKIDNQLRQVW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D+E I ++Q++ R EY + + Q L + + F GW+K+ + EVL N Sbjct: 180 DREFIAFSDQLTRLRIEYLKLLKPEFDKVVSQLLGDMDVQLGFSYGWDKKRQLDEVLASN 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T GP +AD++++ DG + LSRGQ KL++ AL+LAQG R +GR C Sbjct: 240 FERDLRQGFTGSGPQRADIKLKVDGHNAAERLSRGQKKLVVSALKLAQGALFQRMNGRPC 299 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM--FTVEKGKI 355 +YLIDD SELD L L+ + +Q F++ + + + + F + G I Sbjct: 300 IYLIDDLPSELDSAHGELFCKVLEQSSNQCFITCVDDSSLNAFWHSQTDIATFRIADGDI 359 >UniRef50_C5NY44 DNA replication and repair protein recF n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NY44_9BACL Length = 378 Score = 298 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 165/378 (43%), Gaps = 23/378 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + P N LVG N +GKT+++E+I+ L G+++R+ Sbjct: 1 MKIKSLKLLYFRNYLSTNIEVHPSLNVLVGNNANGKTNIIESIFCLALGKSYRTKSDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + A + + +RE I L + +G S +I G K+ + + + L +PE Sbjct: 61 IMFGETATAMSCIVNKNDRELDIMLGINNKGKS-AKIAGIKKTKLTDFVGELNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-------EQ 173 ++ G P RR F++ + + + + LLKQRN+ L+ + + Sbjct: 120 DLQIVKGSPALRREFMNREFYQFSRIYHKYYLMYQHLLKQRNSYLKDMRKNPKDEMSLAY 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAE 232 L +L+ +A I+ R + I+ + +L ++ AE Sbjct: 180 LETLTSQLVKVALYITKERVSFVRDISKLTYKNMLNISNGQETLKIKYKSSVLDALNIAE 239 Query: 233 VLERNFER-------------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 + + +F D T GP DL + + S+GQ + ++ Sbjct: 240 INDESFTEENLTKVMMKKSFDDIMRGSTKIGPQHDDLEFYINDLDAKMYASQGQQRSIVL 299 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 +L+LA+ FL ++G + L+DD SELD R+ L + Q F++ S + + Sbjct: 300 SLKLAEINFLKEKTGTYPVLLLDDVLSELDKNRQLKLLDAINE-NVQTFITTPSISDIKE 358 Query: 340 MSDENSKMFTVEKGKITD 357 + +K+F +E G I++ Sbjct: 359 DLLKKAKVFKIEDGNISE 376 >UniRef50_Q1YV39 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YV39_9GAMM Length = 370 Score = 297 bits (761), Expect = 4e-79, Method: Composition-based stats. Identities = 128/358 (35%), Positives = 189/358 (52%), Gaps = 4/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L++L I RN++ L+ P N + GANGSGKTS+LE+IY LG GR+FR + V Sbjct: 1 MFLSKLDIFQVRNLQAVQLSCHPQANIIFGANGSGKTSLLESIYLLGRGRSFRHRDLRVV 60 Query: 61 IRHEQEAFVLHGRLQGE--ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + ++ RL + +G+ + +G + RIDG +L +P+QLI Sbjct: 61 VNSNAAELIVSARLNRDVSGSSHQLGIKRTSKGQFEARIDGQALQSAVQLVSELPLQLID 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPW 177 F LL GGP RR FLDWG FH E + W ++ LKQRN LR + L W Sbjct: 121 AHSFMLLEGGPLQRRQFLDWGVFHVEHTYTEVWRRFQKTLKQRNQLLRHGRMGEDMLSTW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ELIPL EQI+ +R Y + ++ + F ++ + GW+ +V ++ Sbjct: 181 TAELIPLCEQITEFRQAYLSQLSKQIQIALSAFDGLGEISLEYYCGWDDSRSLQDVYVQD 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 RD T HG H+AD+RI+ DG P D LSRGQ+KLL+ AL+LAQ + G C Sbjct: 241 QARDIATKTTNHGAHRADIRIKVDGQPAADHLSRGQIKLLVYALKLAQAGHYREKLGESC 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE-NSKMFTVEKGK 354 L+L+DD +ELD + RG + + L Q F++ + + + ++ KMF +E G+ Sbjct: 301 LFLLDDLPAELDYQHRGQVIAYLNDLGCQYFITGVDKQDFECLLEKMPHKMFHMEHGE 358 >UniRef50_A5FNH5 DNA replication and repair protein recF n=23 Tax=Bacteroidetes RepID=RECF_FLAJ1 Length = 359 Score = 296 bits (759), Expect = 6e-79, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 160/356 (44%), Gaps = 6/356 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +++N A N VG NG GKT+VL+AIY L +G+++ + + Sbjct: 1 MHLNKLSLFNYKNFSEAGFDFDIKINCFVGKNGIGKTNVLDAIYHLAYGKSYFNPLAVQN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+H +E FV+ L+ +R I + K ++ +G K ++ +P+ +I+P Sbjct: 61 IKHGEEFFVIDAELEKNDRTEQIVCSLKKGQKKVLKRNGKAYDKFSDHIGFIPLVIISPA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-----QVTRYEQLR 175 L+ G + RR F+D + + ++++ QRNA L+ + L Sbjct: 121 DRDLIVEGSETRRKFMDSVISQLDSTYLHQLIQYQKVIVQRNALLKYFALNHTFDNDTLS 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 ++++L + I R E+ + E + +L+ Sbjct: 181 IYNEQLNEFGKSIFEKRKEFLEEFIPIFNVHHQAITGSEESVQLVYESHLFEKDLLTLLQ 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 N +DR L YT+ G HK DL D P++ S+GQ K + AL+LAQ EFL ++SG Sbjct: 241 ENINKDRALHYTSSGIHKDDLSFEIDSHPIKKFGSQGQQKSFLIALKLAQFEFLKKQSGV 300 Query: 296 RCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + + L DD +LD+ R + + T Q+F+S E + + + + Sbjct: 301 KPILLFDDIFDKLDETRVAKIVEMVNSETFGQLFISDTHPERTEAIVKSTHQTYKI 356 >UniRef50_B4UJV1 DNA replication and repair protein recF n=4 Tax=Anaeromyxobacter RepID=RECF_ANASK Length = 372 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 159/370 (42%), Gaps = 16/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++DFRN+ LA SP L+G NG GKT++LEAIY L + R++++ + Sbjct: 1 MKLLSLHVQDFRNLAAVALAPSPRATVLLGENGQGKTNLLEAIYFLTTLKPLRAVRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG---HKVAELAHLMPMQLI 117 +R + + G +G + + G + +DG ++ + + Sbjct: 61 VRFGADQGAVAGDFEGPGGVRRVAVQVAAGGRT-ATLDGKALGSGARLDDYFEGLASVCF 119 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 +P+ L+ GP RR FLD F+ P R L+ RNAALR + + Sbjct: 120 SPDDLLLVKAGPDGRRRFLDRAAFNRWPAVLGEAREYVRALRARNAALRAGPAEVE-ASF 178 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-----------QRGWEK 226 + L+ ++ R E A +A + + + E Sbjct: 179 REPLVRAGARLLVRRRELVAELAPRLQAAFAEISGPEAPEAHLAYRAAGGVDVAHPEAEV 238 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 A LE ERDR+ +T+ GPH DL + G S+GQ + L+ AL++A+ Sbjct: 239 AARLAHALEARLERDREKGFTSAGPHMDDLVLALGGKGARLYGSQGQQRALVLALKIAEI 298 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E L GR L L+DD +SELD + L L A +Q F+++ + + ++ Sbjct: 299 ENLRAALGRPPLLLLDDVSSELDPAKNRFLLGYLAALPAQAFLTSTDRRLIEPAAGPDTA 358 Query: 347 MFTVEKGKIT 356 F V G ++ Sbjct: 359 FFEVRSGVVS 368 >UniRef50_B0S909 DNA replication and repair protein recF n=2 Tax=Leptospira biflexa serovar Patoc RepID=RECF_LEPBA Length = 367 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 161/362 (44%), Gaps = 8/362 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ I++FRN E L F +G NG GKT++LE+I L + ++FR ++ Sbjct: 1 MFLKKIYIKNFRNHEETQLTFKSRLVFFIGNNGEGKTNLLESISLLSYLKSFRESDQNQL 60 Query: 61 IRHEQEAFVLHGRLQGEERET--AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 +R + + + E E G+ + K++++G + K+++ +++ Sbjct: 61 LRWDTSDTFIRAEFESEGNEYLFEYGIEHSQTKRKKLKVNGEEFKKISDYVGYFRSIVMS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPW 177 P ++ G RR FLD + +RL+KQRNAAL+ + ++ W Sbjct: 121 PPDILIIEDGNVERRRFLDAFISSTNRYYLKQLIEYERLIKQRNAALKKENASDREIGIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVLER 236 D+ +I +I R + +A Q + +++ + E+ + L Sbjct: 181 DEPIIEHDSEIREIRTKTIQSLAGYFHQNLLQLSSGKDPYFLTYKPNITSKEEHKQKLID 240 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 N +D+ + YT+ G H+ L I D + S+GQ + + AL+ A + + +G Sbjct: 241 NLRKDKAIGYTSCGNHRDTLPIGFDDKDLSGFGSQGQKRSAVIALKTACFQMIRDTTGEA 300 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE---NSKMFTVEKG 353 + LIDD ELD +RR + + Q F + E + + + +++ ++ G Sbjct: 301 PVLLIDDIIRELDVKRREYFVNLISECG-QAFFTTTDLEGINEYVGNLTVDKEIYIIDSG 359 Query: 354 KI 355 K+ Sbjct: 360 KV 361 >UniRef50_C2GFJ4 DNA replication and repair protein recF n=1 Tax=Corynebacterium glucuronolyticum ATCC 51866 RepID=C2GFJ4_9CORY Length = 374 Score = 295 bits (755), Expect = 2e-78, Method: Composition-based stats. Identities = 88/366 (24%), Positives = 147/366 (40%), Gaps = 15/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFR+ DL L PG GANG GKT+++E+IY L + + R + Sbjct: 1 MFVRHLTLKDFRSWPELDLELGPGVTVFTGANGFGKTNIVESIYYLANLSSHRVKHDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + L + RE + +T + +++ T EL + L +PE Sbjct: 61 VRAGADVAQLAATVVSGGRELVVRMTVKPHAANLAQLNRTRLRHPRELLGGVRCVLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------EQL 174 L+ G P+ RR +D P F + +R+LKQRNA L+Q L Sbjct: 121 DLHLVTGEPEGRRRLIDSVISQETPRFSATKAEYERVLKQRNALLKQAKANFYPSMHGML 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-------EFSLTFSFQRGWEKE 227 WD +L L ++ T R+ + + + P + + + E Sbjct: 181 DVWDSQLASLGAELVTARSALITRLHPLVEAAYLEIAPHSRPPAISYLTRDQAETTADTE 240 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 L R+ T GPHK DL + AP + S G+ AL++A Sbjct: 241 ALLLTSLAEIRPREIDAGRTLIGPHKDDLGLYLGEAPAKGFASHGETWSFAIALKIAVFR 300 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 G + ++DD +ELD+ RR L S +++ + QV ++ + Sbjct: 301 LF-STGGHIPILILDDVFAELDNPRRQALTSMIRSAE-QVLITTAVPTDIPTDLTHTDHT 358 Query: 348 FTVEKG 353 ++ G Sbjct: 359 VLLKDG 364 >UniRef50_B8KUE9 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUE9_9GAMM Length = 357 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 185/356 (51%), Gaps = 4/356 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L I RN+ A ++L N L G NGSGKTSVLEAI+ L GR+FR+ VI Sbjct: 2 IKQLAIEGVRNL-DASVSLGSSANLLYGRNGSGKTSVLEAIHLLAVGRSFRANSAKPVIG 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ ++ + R +G+ + K G RI+G +A LA ++P+ ++ Sbjct: 61 FDRDHCLVTATVTEGNRNQQLGIQRSKDGSVIARINGEAVTSLAMLAEVLPVVVMDSGIV 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 +L++G P+ RR F+D FH E F AW +R L+QRNA LR+ T W +E+ Sbjct: 121 SLIDGQPEGRRRFIDASVFHVEQSFLPAWRRFQRALRQRNAGLRRGTLEGD-EAWRREVA 179 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFERD 241 ++++ R+ + A + + + + F+ GW+K E LER+ E D Sbjct: 180 SAGQKLTEMRSVALDALQARFVASAEALSDDIAGMALVFRAGWDKTVGLLEALERSLESD 239 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R +T GPH+AD+++ DG P + +SRGQLKL AL+LAQG + ++S +YL+ Sbjct: 240 RLQGFTHVGPHRADIKLLIDGRPAAEVMSRGQLKLAATALKLAQGGLIAQQSRSTPVYLV 299 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS-DENSKMFTVEKGKIT 356 DD +ELD + +L A QV +A+ + V +F VE+G + Sbjct: 300 DDLLAELDSGHSRAVCDQLVAAGGQVVFTAVDRDEVPAFWSGSELTLFHVEQGSVV 355 >UniRef50_A5D6E6 DNA replication and repair protein recF n=1 Tax=Pelotomaculum thermopropionicum SI RepID=RECF_PELTS Length = 364 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 156/370 (42%), Gaps = 20/370 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL + +FRN + FN L G N GKT++LE+IY GR+FR+ + + Sbjct: 1 MLLRRLEMLNFRNFARQAVEPGLYFNVLSGRNAQGKTNILESIYLACTGRSFRTAREKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E+E + + RE + +T G ++ ++G K + L TP+ Sbjct: 61 IKREKEFSSIRCLFETRGREVEVKVTLVP-GRKRIEVNG--VLKSGHPFGWPGVVLFTPD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ----LRP 176 ++ G P RR FLD+ P + R+L QRNA LR+ L Sbjct: 118 DLVMIKGSPAERRRFLDYDLGPFHPHYAHCLDRYNRVLSQRNALLREAKEKRTTGGPLEV 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGW---------EK 226 WD++L ++ R + ++ ++ S+ E Sbjct: 178 WDEQLCRYGSRLLFLRVSLLKKFFPAIRALHRELTEGAENIEISYLSSLKIGEECGEDEI 237 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 ++ L + + T GPH+ DL I+ DG S+GQ + ++ L++ Sbjct: 238 YERFSGELRLVRDEEIARMQTLVGPHRDDLHIKVDGHDARVYCSQGQQRTIVLTLKVFLI 297 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 E E+G + L+DD ELDD RR L RL Q F++ D+ +K Sbjct: 298 EQWRSETGEYPILLLDDVLFELDDNRREALMCRLGGL-VQTFLTCTRVN--FDIEGFKAK 354 Query: 347 MFTVEKGKIT 356 +FTV G++T Sbjct: 355 VFTVSGGEVT 364 >UniRef50_A1TWJ3 DNA replication and repair protein recF n=3 Tax=Marinobacter RepID=RECF_MARAV Length = 373 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 203/373 (54%), Gaps = 17/373 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L + FRN+ +A + SP FN L GANGSGKTSVLEAI LG GR+FR + V Sbjct: 1 MALVKLQTQHFRNLLSAPVEFSPSFNLLYGANGSGKTSVLEAIGYLGLGRSFRVSRHQAV 60 Query: 61 IRHEQEAFVLHGRLQ--------GEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHL 111 + H Q + G L E+ E IG+++D ++++R+DG ++ LA Sbjct: 61 VAHGQSKLTVFGALDSGLLAQESSEKVEHRIGISRDVSLKETQLRVDGEAVRSLSFLAMH 120 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 +P+ +I P F ++ GGP RR FLDW FH EP F + W ++R+ QRN LR Sbjct: 121 LPVSVIDPGVFDIVAGGPGKRRQFLDWLVFHVEPSFSSLWQQVQRVTSQRNQMLRNGRLD 180 Query: 172 EQLR-PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP--EFSLTFSFQRGWEKET 228 E L WD + LAE +S R + L F GW++ T Sbjct: 181 ESLMRVWDSQYGALAESLSDIRETVFQRFKIAFESVLAELDAPWVEGLKMDFYPGWDRST 240 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 EVL + E++R++ +T +GP++AD+R++ G PV +T SRGQ K L+ +++AQG+ Sbjct: 241 ALTEVLVNHREQERRMGHTLYGPNRADIRLKFGGRPVAETFSRGQQKTLVILMKIAQGKV 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE----N 344 L+ G++ +L+DD +ELD R +LA L+ + QVF+++I + + Sbjct: 301 LSD-LGKQVTFLLDDINAELDVRHRVMLARNLQELRCQVFITSIEHPEPDTLWHDGDTPE 359 Query: 345 SKMFTVEKGKITD 357 +MF VE G++T+ Sbjct: 360 YRMFHVEHGQLTE 372 >UniRef50_Q5X988 DNA replication and repair protein recF n=4 Tax=Legionella pneumophila RepID=Q5X988_LEGPA Length = 353 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 123/358 (34%), Positives = 194/358 (54%), Gaps = 11/358 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ + I +FRNI + L L+P FN + G NGSGKTS+LEA+Y L +FRS ++ + Sbjct: 1 MILSEVRIHNFRNIASTSLILNPNFNCITGPNGSGKTSLLEALYMLSCAHSFRSREVAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q + E+ I + K ++++++ ++LA+ +P Q+I + Sbjct: 61 ISYGQNQLNV---FAHAYDESTISVQKSITDGTQIKLNNQFCCTTSQLAYALPCQVIYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR+ LDWG FH + + W + KR+L QRNA L+ YE PWD++ Sbjct: 118 IFQIIDAGPSVRRSLLDWGLFHVKHDYLKIWKDYKRILSQRNALLKSRATYEHFIPWDQQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE---TEYAEVLERN 237 L LA Q+ R +Y S T + +GW+++ E+L+++ Sbjct: 178 LSQLANQLDKARNDYFFQWQPKFYQVLSDLT-NISCTVEYYKGWDRKNAGQNIEELLQKS 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ DR YT +GPH+ADL I + V+ TLSRGQ K+++ AL+LAQG+ L + C Sbjct: 237 FDSDRNKLYTQYGPHQADLIISIEQYRVKHTLSRGQQKIILIALKLAQGQLL----DKDC 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LYLIDD A+ELDD + L L + Q ++ + + D+ +S +F V G I Sbjct: 293 LYLIDDLAAELDDYHQRNLIKYLTQQKGQFVITNLINNNNYDILPIDSGLFEVNCGAI 350 >UniRef50_A8PQC0 DNA replication and repair protein recF n=1 Tax=Rickettsiella grylli RepID=A8PQC0_9COXI Length = 363 Score = 293 bits (750), Expect = 8e-78, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 215/360 (59%), Gaps = 4/360 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL FRN+ DL SP FNF+ G NGSGK+S+LEAIY L GR+FRS R Sbjct: 1 MHLFRLKTNYFRNLAELDLEFSPHFNFIYGKNGSGKSSLLEAIYFLSLGRSFRSRLASRA 60 Query: 61 IRHEQEAFVLHGRLQGEERET--AIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I+++ E F L L G T IGL K +QG +K++ID + V+ELA L+P+Q I Sbjct: 61 IQYDAERFNLFSVLLGTSSTTMKTIGLEKIRQGKTKIKIDNNT-NPVSELAKLLPLQFIN 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P + LL+GGP+ RR F+DWG FH EP FF W + +LKQRNAAL++ + Q++ WD Sbjct: 120 PNSYLLLSGGPRARRGFIDWGVFHVEPQFFQIWQRYQHILKQRNAALQRQVPWNQIKIWD 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 LI A++I+++R Y + + + + + L F +GW+K+ A +L + Sbjct: 180 LALIEAADEITSFRENYLHQLVPLIIELINKLVNLQGLNLVFYQGWDKKLNLASILSGSL 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERD +L YT GPH+ADL + +G V + LSRG+ KLL+CAL+LAQG L + + + C+ Sbjct: 240 ERDYKLLYTQFGPHRADLLLSLNGISVHEILSRGEQKLLICALQLAQGLLLKKIAQKSCI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS-DENSKMFTVEKGKITD 357 YL DD SELD ++ L L ++QVF++ I + + K+F V+ G++ + Sbjct: 300 YLFDDLFSELDPTKQNALMQLLNTLEAQVFITTIEKTLIKSVETHRLGKIFHVDDGQVIE 359 >UniRef50_Q3A8P5 DNA replication and repair protein recF n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=RECF_CARHZ Length = 353 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 87/360 (24%), Positives = 166/360 (46%), Gaps = 11/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL + +FRN E + SPG + GANG GKT+++EAIY L G++FR + + Sbjct: 1 MFVDRLQLLNFRNYEELLIDFSPGKILIYGANGQGKTNLIEAIYYLVIGKSFRG-KDNSL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E+F + ++ ++T +G+ +G ++ +G + + + L TP+ Sbjct: 60 IRFGAESFQIGAKISKNGQKTTLGVEYSVKGKFFLK-NGQKQKSFSSILGNLKGVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PWDK 179 + G P RR LD + +++L +NA L+QV + L W+ Sbjct: 119 EPVIFFGFPANRRKALDLFLAQTSKTYLLNLIYYQKVLTNKNALLKQVWNVDNLIEAWNY 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEKETEYAEVLER 236 +L +I R + + + + Q + ++ G + + + E+L++ Sbjct: 179 KLAEFGAEIIKEREKCLKILNDIINELNAQLRFLPGKIEASYKT-SGADDKEKIFELLKQ 237 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + ++ GPH+ DL +G ++ S+GQ K + +L+Q ++ + SG + Sbjct: 238 KYTEEKDKKQALFGPHRDDLNFYVNGRDLKIFGSQGQKKGALLLFKLSQAVYMAKVSGEK 297 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L+DD SE D E+R L QVF++A + + ++ +E GK++ Sbjct: 298 PVVLLDDLYSEFDKEKREALEGFFLKYSDQVFITATEPIDLKNY----HQVVFIENGKVS 353 >UniRef50_A4J0F3 DNA replication and repair protein recF n=1 Tax=Desulfotomaculum reducens MI-1 RepID=RECF_DESRM Length = 371 Score = 292 bits (748), Expect = 1e-77, Method: Composition-based stats. Identities = 88/370 (23%), Positives = 165/370 (44%), Gaps = 18/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L +R+FRN + A P N + G N GKT++LEAIY G +FR+ + V Sbjct: 1 MRVKKLSLRNFRNYKEAQFIPHPSINIITGPNAQGKTNLLEAIYYSLRGCSFRAEKDRDV 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 E V++ + R + ++G K+ ++G + + +EL L + L PE Sbjct: 61 TNWESNHTVINTEVNLSSRLIKLQWKI-QEGSKKLSLNGVERPR-SEL-DLFGVVLFCPE 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLRP 176 +L+ G P+ RR FLD+ PG+ W ++L QRN+ L+++ E L Sbjct: 118 DLSLIKGSPQERRHFLDYEVGTLSPGYSQLWRQYAKILSQRNSLLKEIRDHRSKQEVLEV 177 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTC-------KQFLPEFSLTFSFQRGWEKETE 229 WD++L ++ R + + T ++ ++ + + G + Sbjct: 178 WDEQLYRYGAKVIYLRLQVLKKLIPIARKTHFGLTGGTEELQAKYLSSLVLEPGLSEGQI 237 Query: 230 YA---EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 Y ++ + + + T GPH+ DL + +G + S+GQ + + +L+L+Q Sbjct: 238 YQVFSSSSKKIRQMELKRCQTLLGPHRDDLSLAINGVEAKTFGSQGQQRTVTLSLKLSQL 297 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 + E G + L+DD ELD R+ +L ++ Q F++ + + Sbjct: 298 DLWYHEFGEYPVLLLDDVLFELDRSRQNMLIDKILNK-VQTFITTSFTGGIEETIKGAGL 356 Query: 347 MFTVEKGKIT 356 ++ V G +T Sbjct: 357 LWQVNAGSLT 366 >UniRef50_B3ERQ3 DNA replication and repair protein recF n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ERQ3_AMOA5 Length = 370 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 154/364 (42%), Gaps = 9/364 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L F+N ++ +L+ + N +VGANG+GKT++L+AI+ L ++ + + Sbjct: 1 MLLRKLRCYHFKNYDSIELSFATQLNCIVGANGAGKTNLLDAIHYLSLTKSAFNSIDSQN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + G ++ + D+ ++++G + E P+ L TP Sbjct: 61 ILHGGTQMSIQGHFFKNDKSYDVKCIVDRDQGKSLQVNGKAYKTMREHIGQFPIVLTTPY 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLR 175 L+ + RR F D +P + +++LK RN+ L+ + Sbjct: 121 DTELIRSTSEVRRKFFDAILCQIDPNYLHTLIQYQQILKHRNSFLKMSAGKFNVDRALIN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +D +L+PL +Q+ R + + + F+ + + + + Sbjct: 181 SYDTQLLPLCKQLYAARKAFVDIFYPILQQQYEYFVDAPEIIEMGYESDADDPGFEQRFL 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 N + D T G H+ D + P++ S+GQ K + ALRLAQ + + G Sbjct: 241 DNIKEDLLAQRTILGIHRDDYVFMLNNYPIKKFGSQGQQKSFIIALRLAQFACIHQALGC 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLK-ATQSQVFVSAI---SAEHVIDMSDENSKMFTVE 351 + L L+DD +LD++R L + QV+++ + ++ + +F +E Sbjct: 301 KPLLLLDDIFDKLDEQRIERLVYLMAQQYFGQVWITDAGGKRSASILKEIQADKALFKIE 360 Query: 352 KGKI 355 G + Sbjct: 361 GGTL 364 >UniRef50_D0LFL1 DNA replication and repair protein recF n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFL1_HALO1 Length = 382 Score = 292 bits (747), Expect = 2e-77, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 162/381 (42%), Gaps = 28/381 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + RN+ L P FN G NG GKT++LE IY +G R+FR+ ++ + Sbjct: 1 MLVRALKLEGIRNLAPLTLTPGPRFNVFHGDNGQGKTNLLETIYVVGALRSFRTQRLAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I E++ + R+Q E L +Q +VR+DG +++ + L PE Sbjct: 61 IAFERDRAYIGARIQRGGLERVYEL-VQRQRGRQVRLDGKAVRPISKYFGDFNVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--------VTRYE 172 + G P RR FLD F+ P + +++K RNA LR+ + Sbjct: 120 DLQVPRGSPAERRRFLDRAVFNRSPRYLGEVQAYDKVVKNRNALLRELGSGKRSLRQAGD 179 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETE-- 229 L +D++L L + +R + I + + ++ S+ + Sbjct: 180 FLAVFDQQLAELGALLMRYRVHFLDEIRPRFQEAFQSITHTGLAVDVSYASAVDITQASD 239 Query: 230 --------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 A + RD ++ GPH+ DL DG P S+GQL+ Sbjct: 240 SAESGPGSEQLTRALAAAIAERRPRDLARGSSSVGPHRDDLVFELDGHPAAAFASQGQLR 299 Query: 276 LLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 L+ A + A+ + L G + L+DD +SELD R G L LKA + Q F++ Sbjct: 300 ALVLAWKTAEMQLLAHTHGEEPVLLLDDVSSELDATRNGYLFEFLKARRGQCFITTTHPR 359 Query: 336 HVIDMSDENSKMFTVEKGKIT 356 HV+ S+ + VE G +T Sbjct: 360 HVLLSSERED--YRVEGGLVT 378 >UniRef50_B0MZ06 DNA replication and repair protein recF n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MZ06_9BACT Length = 362 Score = 291 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 91/361 (25%), Positives = 177/361 (49%), Gaps = 5/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+NI +L PG N VG NG+GKT+V++A+Y L ++ ++ G+ Sbjct: 1 MYLKKLSLINFKNIREENLEFRPGINCFVGDNGAGKTNVIDAVYFLSMCKSSLAMTDGQN 60 Query: 61 IRHEQEAFVLHGR-LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +RH + F+L G+ L E R ++ ++G ++ +G + ++++ L+P+ +++P Sbjct: 61 MRHGSDFFLLDGQYLTDEGRSESVVCAFARKGGKTLKRNGKEYERLSDHVGLIPVVIVSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L++ RR +L+ + + A +L +RN L+ + L +D+ Sbjct: 121 ADTMLISDAADERRRYLNGFISQLDRAYLQALVRYNAVLGERNRLLKISRDEQMLCIYDR 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L+ I R+E +A + ++A + + R +T + E+L ++ E Sbjct: 181 QLVEQGGIIHRKRSEIAALLEPEVARYYRHLSSDREQVTLEYRSELNDTPFEELLLKSRE 240 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D +T G H+ DL + G P+ S+GQ K + AL+LAQ + + G + + Sbjct: 241 KDFVNGFTTAGIHRDDLVLHIGGYPLRKYGSQGQQKSFLIALKLAQYALVAQAKGEKPIL 300 Query: 300 LIDDFASELDDERRGLLASRLKATQ-SQVFVSA---ISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +LD R L + Q+F++ ++D + ++ +FTVE G I Sbjct: 301 LLDDLFDKLDAGRVEQLIRLVGDDGFGQIFITDCNPTRLRTILDKTGDDYSLFTVENGGI 360 Query: 356 T 356 Sbjct: 361 V 361 >UniRef50_B9XRI4 DNA replication and repair protein recF n=1 Tax=bacterium Ellin514 RepID=B9XRI4_9BACT Length = 361 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 98/360 (27%), Positives = 166/360 (46%), Gaps = 10/360 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +RDFRN D+ +PGF L+G N GKT++LEAIY + R+FR + ++ Sbjct: 1 MHLAHLRLRDFRNYPRLDVDFAPGFQVLLGDNAQGKTNILEAIYLMATLRSFRGVGGSQM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +RH Q+ + + G++ G+ + I + + K+ +D K+A+ + + + E Sbjct: 61 VRHGQKGYFVGGKVVGQG-DHEIKM-YWSPAERKLSLDNQPIRKLADYFGAIRVVIFCTE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDK 179 L+ G + RR F+D P + L+ RNA L+Q + E L + Sbjct: 119 DLQLVKGTSRARRRFVDLLLSQTHPTYLPLLQRYASALRSRNALLKQRVQDESALESFTA 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAEVLERNF 238 EL+ L + R E ++ ++ L +Q +K ++A L + Sbjct: 179 ELVKLGNDLIRMRHELIPKLSPLARLAYRRISNDAEELRLEYQPSVKK--DFAVELAQTR 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 R+R T GPH+ ++++ + S GQ + L AL++AQ E+LT G + Sbjct: 237 ARERTYRSTLIGPHRDEVQLLLNDRSAAQFGSEGQKRTLAIALKMAQAEYLTGLHGSAPI 296 Query: 299 YLIDDFASELDDERRGLLASRLK---ATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 LIDD ELD +RR L L+ T+ QVF++ E+ + + V G + Sbjct: 297 LLIDDIMGELDAKRRSGLLPLLERAHHTRGQVFMTCTE-ENWPRELGRDLHRWEVRSGTL 355 >UniRef50_C0GI71 DNA replication and repair protein recF n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GI71_9FIRM Length = 369 Score = 290 bits (743), Expect = 5e-77, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 172/372 (46%), Gaps = 19/372 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +R++RN + L L+P N L G+N GKT++LE++ + GR+FR+ G + Sbjct: 1 MRLETIELRNYRNYSSLSLELNPNINLLFGSNAQGKTNLLESVAFIAAGRSFRTRNEGEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVR-IDGTDGHKVAELAHLMPMQLITP 119 I + R+ + ++ D +K+ ++G ++ + A + L TP Sbjct: 61 ILWGENNCTASARVCNRMGRETLKVSFDAGSRNKIFSVNGLTMNR-SNYAGRLVTVLFTP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLR 175 E +++ G P RR F D P + L+++++QRN L++ + ++L Sbjct: 120 EDLSIVKGSPAVRRKFFDDEISKISPVYEYELGRLQQIIRQRNNLLKKFRQKVLGSQELA 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEV- 233 W+++L L+ +I R I + + + SL +Q + + Sbjct: 180 SWNEQLAILSAKILIKRVTAIRRIGLLARLSHRNLTGRDESLEILYQSFLPLDDGILDAQ 239 Query: 234 ---------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 LE + +L T GPH+ D+ +G S+GQ + L+ AL+LA Sbjct: 240 VIQDALLAGLEEKKHEEARLGQTLLGPHRDDIVFNINGRNARLYASQGQQRTLVLALKLA 299 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + EF+ E+G + L DD SELD+ RR LL + + Q F++ AE + E+ Sbjct: 300 ELEFIKGETGEYPVLLFDDVFSELDERRRRLLVETIDG-RIQTFITGTEAEKLRQF-KES 357 Query: 345 SKMFTVEKGKIT 356 KMF V +G++ Sbjct: 358 GKMFKVREGEVV 369 >UniRef50_Q11NR3 DNA replication and repair protein recF n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=RECF_CYTH3 Length = 377 Score = 290 bits (742), Expect = 7e-77, Method: Composition-based stats. Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 10/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +F+N +L+ S G N G NGSGKT++L++IY L ++F S + Sbjct: 1 MYIEKISLLNFKNYPELELSFSAGINLFAGLNGSGKTNLLDSIYCLCLTKSFLSTTDQQT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I Q F G Q +E I D +D K++E P ++TP Sbjct: 61 ITTGQGYFSALGWFQENAKEFKIQYDFD-GKKKSFTVDKKPYAKISEHIGRFPAIVLTPH 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----LR 175 L+ + RR F D + + A +KQRNA L+Q + Sbjct: 120 DTDLIRNSSEDRRRFFDTLFSQADHVYLDALIRYNHFIKQRNALLKQAADGMLVDRILMD 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +D L+ + I+ R EY + + P+ T ++ +V + Sbjct: 180 AYDHNLLQSGKIIAQKRDEYLKRLLPIFQEYYSLLSPDHEATDIEYETNVLSADFEQVFK 239 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ++ +D L T G HK D + + P++ S+GQ K + AL+LAQ E L +G Sbjct: 240 DSYSKDLILQRTNKGVHKDDFKFLINNEPIKHYGSQGQQKTFVIALKLAQYELLKACTGH 299 Query: 296 RCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEH---VIDMSDENSKMFTVE 351 + L+DD +LDD R L ++ Q+F+S + + ++ +MF ++ Sbjct: 300 NPILLMDDIFDKLDDLRIEKLIHLVQKYITGQLFISDARPDRSSIFFQSNTKDFRMFIID 359 Query: 352 KGKIT 356 +GK+ Sbjct: 360 RGKVE 364 >UniRef50_Q3BZS9 DNA replication and repair protein recF n=21 Tax=Xanthomonadaceae RepID=RECF_XANC5 Length = 368 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 168/362 (46%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL I R T +L S N L G NG+GKTSVLEA++ + +GR+FR + Sbjct: 1 MHVVRLSIHRLRRFHTVELHPSSTLNLLTGDNGAGKTSVLEALHLMAYGRSFRGRVRDGL 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLT---KDKQGDSKVRIDGTDGHKVAELAHLMPMQL 116 I+ + +G + + + R+DG D ++ L + + Sbjct: 61 IQQGANDLEVFVEWKEGNGAAGERTRRAGLRHRGQEWTGRLDGEDVAQLGALCAALAVVT 120 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP 176 P L++GG + RR FLDWG FH EP F T W R LKQRNA L+Q + L Sbjct: 121 FEPGSHVLISGGGEPRRRFLDWGLFHVEPDFLTMWRRYARALKQRNALLKQGAQPRMLDA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT-FSFQRGWEKET-EYAEVL 234 WD EL E +++ R Y + + P L+ +F GW++ A+ L Sbjct: 181 WDHELAESGESLTSRRTRYLERLQERLVPVADAIAPALGLSALTFAPGWKRHEVSLADAL 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 ERDRQ YT+ GPH+AD P D LSRGQ KL A LAQ E E G Sbjct: 241 LLARERDRQNGYTSQGPHRADWVPSFQALPGRDALSRGQAKLTALACLLAQAEDFAYERG 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + +DD SELD +G + RL + +QV ++A + + + F VE G Sbjct: 301 EWPVIALDDLGSELDRHHQGRVLQRLASAPAQVLITATETPPGLADAGALLQQFHVEHGH 360 Query: 355 IT 356 IT Sbjct: 361 IT 362 >UniRef50_Q83NZ4 DNA replication and repair protein recF n=2 Tax=Tropheryma whipplei RepID=RECF_TROW8 Length = 363 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 159/360 (44%), Gaps = 16/360 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++ + +R+FRN E ++ + G N + G NG GKT++ EAIY L + R+ + +I+ Sbjct: 6 ISHINLRNFRNYEYQSISFTDGLNLIRGDNGQGKTNLAEAIYFLSGFGSHRTYKNQPLIK 65 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 ++ + ++Q + + + ++ +++DG K+ +L + + +PE Sbjct: 66 SGEQKAEISAKIQSKYGTRNVYIGISCNSNNILKVDGKP-SKLRDLVSVFSCVIFSPEDI 124 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLRPWD 178 L+ G P +RR +LD P +S R LKQRN+ L+ + + L W Sbjct: 125 DLVKGDPGHRRKYLDDIICRARPMMLDIYSAYDRTLKQRNSLLKSFRKSSCKSDLLDIWT 184 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 ++L+ L +I R + +++ + S F + + + + Sbjct: 185 QKLVELGLEIVNARKRLLKILNPKISEFYSKLAGVSSTAELFCQSSD---CLIDTFDLLR 241 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES---GR 295 +R+ + T GPH+ ++ I + P S+G+ L +++L+ E + Sbjct: 242 DREIEEGVTLAGPHRDNVDILLNSCPARSQSSQGESWTLALSMKLSLIELMRETKRLYDP 301 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + ++DD + LD R+ LA + + + Q V+ + S+ VE+GK+ Sbjct: 302 DPVVILDDVFAHLDSYRKQKLAQEVFSYE-QTIVTTTDNSD----NYRTSQTLVVEEGKV 356 >UniRef50_A7AC47 DNA replication and repair protein recF n=3 Tax=root RepID=A7AC47_9PORP Length = 367 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 92/361 (25%), Positives = 167/361 (46%), Gaps = 7/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I +++NI A+++ SP N G NG GKT++L+A++ L ++ + ++ Sbjct: 1 MILKKLSILNYKNILQAEVSFSPEINCFFGNNGMGKTNLLDAVHYLSFCKSHINTPDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + Q+ VL G E RE I ++ + + + + K++E L+P+ +++P Sbjct: 61 INNGQDMCVLQGNYDYEGREEEIFCAIRRRQRKQFKRNKKEYDKLSEHIGLLPLVMVSPA 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PWDK 179 L+ GG + RR FLD + + A + L QRN+ L+ L + Sbjct: 121 DSELIQGGSEERRRFLDVIISQQDKPYLHALIQYNKALLQRNSLLKDQCIDASLYEVLEM 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEVLERNF 238 +L + R + + + + EK A++L N Sbjct: 181 QLDMYGRMVYEKRQMLVNDFIPIFNEYYQTICRSTEQVGLRYISQLEKG-SLADMLAANR 239 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ERDR L YT+ G HK +L + +G + S+GQ K + AL+LAQ FL+ R + Sbjct: 240 ERDRILGYTSTGIHKDELEMTLNGHLIRRVGSQGQNKTYLIALKLAQYVFLSCRGQARPI 299 Query: 299 YLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISA---EHVIDMSDENSKMFTVEKGK 354 L+DD +LD +R + + Q Q+F++ + + ++ + +F VE+G+ Sbjct: 300 LLLDDIFDKLDADRVEQIVKLVSGDQFGQIFITDTNRKYLDAILQSINHGYALFRVEQGE 359 Query: 355 I 355 + Sbjct: 360 V 360 >UniRef50_C9LP63 DNA replication and repair protein recF n=1 Tax=Dialister invisus DSM 15470 RepID=C9LP63_9FIRM Length = 355 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 89/344 (25%), Positives = 152/344 (44%), Gaps = 10/344 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + RN E + + L G NG+GKT+++E+IY G++FR+ + Sbjct: 1 MRCGKTHLIEIRNFEDFSIDPAENMTVLTGKNGTGKTNIIESIYFASVGKSFRTSNDEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR +E + I + + K+ I+ T K EL + L TP+ Sbjct: 61 IRLNKEEGTILLDFSVRGVTHEIKIKLSRNKGKKILINETATKK-RELMGMFRTVLFTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 L+ G P+ RR F+D P ++ R ++QRNAA ++ + + W Sbjct: 120 DLQLIKGAPQNRRRFIDLEISQVSPRYYEEILRYGRAVQQRNAAFKEARFHGFTADVDVW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWE-----KETEYA 231 D ++ A I R E I ++ + S+ +++ E Y Sbjct: 180 DMQIAKGASYIVKKRMETIGKINEIVSSMESLLTDEKESILIKYRKSGNQEERFDEEWYL 239 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + E D + +T+ GPH+ DL +G + S+GQ + + +++LA+ EF+ + Sbjct: 240 EKLALSREEDSRFCHTSIGPHRDDLIFLMNGNDISSYGSQGQQRTAILSVKLAELEFVKK 299 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 E+G L L+DD SELD ERR L S L + Q ++ Sbjct: 300 ETGEYPLLLLDDVGSELDKERRDALFSYLIEKEIQTIITTADES 343 >UniRef50_B0RH73 DNA replication and repair protein recF n=14 Tax=Actinobacteria (class) RepID=RECF_CLAMS Length = 408 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 39/392 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFRN AD+AL PG VG+NG GKT+++EA+ L + R + Sbjct: 1 MIVRHLSLGDFRNYTRADVALLPGATLFVGSNGQGKTNLVEALGFLSTLGSHRVSTDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E+ V+ LQ RE + + ++ ++ +++GT K EL L PE Sbjct: 61 VRQGAESAVIRALLQHAGRELRVEVQINRSAANRAQVNGT-ATKTRELPRYFSSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-------QVTRYEQ 173 L+ G P RR LD P S+ R LKQRN L+ + + Sbjct: 120 DLALVRGDPSGRRRLLDQLLVLRTPRLAGVLSDYDRALKQRNTLLKSARARGMKADQLST 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-------SLTF-------- 218 L WD+ L+ + QI R + ++A L+ Sbjct: 180 LDIWDERLVAIGSQIIAARGALVESLQPELARAYLAVAGSDHGPSARPELSILADDPGED 239 Query: 219 ------------SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 F R + + + R R+ + T GPH+ D+ R +G P + Sbjct: 240 DVADETGARDGGRFTRTEDVVPVFTAAIARMRPRELERGLTLVGPHRDDVLFRLNGLPAK 299 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESGR-RCLYLIDDFASELDDERRGLLASRLKATQS 325 S G+ A++LA E L R+S + ++DD +ELD RRG LA + + Sbjct: 300 GYASHGESWSFALAIKLASAELLRRDSQTGDPVLILDDVFAELDQARRGRLAEAVTGFE- 358 Query: 326 QVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 QV ++A E V + N+ + G I + Sbjct: 359 QVLITAAVFEDVPEHLAANA--VHIRAGAIVE 388 >UniRef50_C8WXT0 DNA replication and repair protein recF n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXT0_ALIAD Length = 371 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 98/371 (26%), Positives = 165/371 (44%), Gaps = 17/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+ + DFRN A++ LSPG N LVG NG GKT+ LEA+ + G++ R+ + + Sbjct: 1 MDIRRVELHDFRNYAKAEIELSPGVNVLVGENGQGKTNALEAMLLIAVGKSHRAHRDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR EQ+ + + + L +G + +G ++ E + + L PE Sbjct: 61 IRWEQDRARILLEASTRYGDRRLTLELGPEG-RRAFANGVQVGRMTEFVGQVQVVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR---QVTRYEQLRPW 177 L+ G P+ RR FLD EP + S R L QRN L+ + L + Sbjct: 120 DLDLVKGSPRVRRRFLDTELGQMEPLYLHHLSLYNRALLQRNRWLKTAPLSPDDDVLATF 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRG----------WEK 226 D+++ + R + A + A A +++ E Sbjct: 180 DRQIAFHGAHVIHRRLRFLARLRAYAARIYSDIASGREEFALAYRSSVSGVEEGMSVEEM 239 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 LE+N +D + T+ GPH+ D+ + DG V S+GQ + + +LRLA+ Sbjct: 240 ADTVQRALEKNRAQDLRFGTTSAGPHRDDILLFLDGREVHTAASQGQQRTIALSLRLAEI 299 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 +F+ E G + L+DD SELDD R+ L + + + Q ++ S + ++ + Sbjct: 300 DFMHEELGEYPVLLLDDVLSELDDLRQRNLVLGM-SRKVQTVITTTSLNRLGQEL-DDFR 357 Query: 347 MFTVEKGKITD 357 +F V G I + Sbjct: 358 LFRVCSGIIAE 368 >UniRef50_C6VXQ7 DNA replication and repair protein recF n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXQ7_DYAFD Length = 365 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 9/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + F++ E N +VG NGSGKT++L+AIY L ++ Q Sbjct: 1 MWLEKLRLTYFKSYEEKAFVFGEHVNCIVGENGSGKTNLLDAIYFLTLTKSAFHNQDALG 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IRH + F+L G + I + + D ++++ L P+ LI P+ Sbjct: 61 IRHINDFFLLDGVFNEHGKHIQITCSLQRGQRKVFMADKKHYDRLSDHIGLFPVVLIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-----RQVTRYEQLR 175 L+ G + RR F D PG+ T + ++L QRN L R + L Sbjct: 121 DTDLIREGSEERRRFFDGVLGQAVPGYLTDFLQYNKILTQRNGLLKFFAERNHLDEDLLE 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +++ LI L+++I RA + + ++ Sbjct: 181 TYNEPLIVLSQRIHQHRAAFMEKFVPLFYKFYEFLSSGHEKVDVIYESEVVSPDFPAEFR 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 RN RD T G HK + DG ++ S+GQ K + AL+LAQ E L E G+ Sbjct: 241 RNRSRDLHAQRTGKGIHKDEYVFEIDGVTLKKFGSQGQQKSFLIALKLAQFELLKEEKGK 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLK-ATQSQVFVSAISAE---HVIDMSDENSKMFTVE 351 + L+DD +LDD R L + +QVF++ E +++ + + F +E Sbjct: 301 TPILLLDDIFDKLDDRRIHKLIELIDTGFLAQVFITDARPERSQRILEHVKADVRFFEIE 360 Query: 352 K 352 K Sbjct: 361 K 361 >UniRef50_B1I1H6 DNA replication and repair protein recF n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=RECF_DESAP Length = 360 Score = 287 bits (736), Expect = 3e-76, Method: Composition-based stats. Identities = 103/368 (27%), Positives = 158/368 (42%), Gaps = 21/368 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + D+ + G N + G N GKT+ +EA++ G +FRSL+ + Sbjct: 1 MRLTRIKAGNFRNFQHLDVQPAAGLNIVRGRNAQGKTNFIEAVFFALRGHSFRSLRDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + QE+ + L+G++ T + + G V G K AELA + L TP+ Sbjct: 61 VTWGQESAFVEAELEGKDGRTRVRAELNPAGKKIVW-AGEPVGK-AELAVRLGTVLFTPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV---TRYEQLRPW 177 +L+ GGP+ RR FLD PG+ TA +R L+QRN LR E L W Sbjct: 119 DLSLIKGGPRERRRFLDLELGIFVPGYLTALQLYRRALEQRNHLLRMGGGRRYSELLDLW 178 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET--------E 229 E+ + + R E A + E L ++ + Sbjct: 179 TDEVCKYGMMLLSGRLEILKEFAPLACRLFGAWAGE-ELAVRYRSSVGLSNGVRTPGAGD 237 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L + + + T GPH DL +G S+GQ + ++ AL+LAQ Sbjct: 238 LRETLAAVRQDEIRAGQTQAGPHLDDLAFMVNGKEGRPFASQGQQRSVVLALKLAQVFLW 297 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 R +G + L+DD E D ERR + L+ QVF++ S++F Sbjct: 298 KRHTGEAPVVLLDDLLFEFDRERRDKVLETLQN-DVQVFITTGER------VLSGSRVFC 350 Query: 350 VEKGKITD 357 V G I + Sbjct: 351 VHSGNIQE 358 >UniRef50_Q3A8M6 DNA replication and repair protein recF n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=RECF_PELCD Length = 363 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 102/362 (28%), Positives = 159/362 (43%), Gaps = 6/362 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+++ ++RNIE A+L FN L G N GKT+ LEAIY LGH ++FR + + Sbjct: 1 MILTRIILHNYRNIEAAELCPEENFNLLCGDNAQGKTNTLEAIYLLGHFKSFRRGRNEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + G + + +T + + I+G + E+ P L PE Sbjct: 61 IGSADRHTRVQGEFLRDGLRETVSITITGDKKN-IEINGKRPRQSNEMFGRFPSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 +L G P RRA LD P F +R L+QRN L+ + PW +E Sbjct: 120 EVSLPKGFPAGRRALLDRALCQTRPSFLDHARAYQRCLRQRNILLKSGAAAPIVLPWTEE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETEYAEVLERNFE 239 LI + R Y + + D ++ S+ + + ++ E L N E Sbjct: 180 LIQTGAMVRLARRRYLDRLLPLLRDIYREICSGRESVNLVYPSESDNLSDLKEELRSNLE 239 Query: 240 RDR----QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 R++ + T GPH+ D D + S+GQ + + A + AQ L +E+G Sbjct: 240 REQSRETKYGMTMVGPHRDDPVFMVDDRVLGLYGSQGQQRSFILAFKTAQIIDLEKETGY 299 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L L+DD SELD +R+ L Q QVF++ + + + F V +GK+ Sbjct: 300 TPLLLLDDMTSELDRKRQDYFFRFLHQRQGQVFITCTELSPLQNAGFNRMRTFRVREGKL 359 Query: 356 TD 357 D Sbjct: 360 CD 361 >UniRef50_B3EDN1 DNA replication and repair protein recF n=1 Tax=Chlorobium limicola DSM 245 RepID=RECF_CHLL2 Length = 363 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 81/355 (22%), Positives = 150/355 (42%), Gaps = 16/355 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + FRN + + G N L G NGSGKTSVLE I+ + F + Sbjct: 1 MKIEQIQLVQFRNHKNLSYGPAEGINLLYGPNGSGKTSVLEGIHYCALTKGFVTAYDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F+++GR + +E + + + K+ ++G D ++ +P +P Sbjct: 61 LAFGESFFLINGRFISDALKEDGVKVVYSRDNGKKLTVNGQDLTSFSQHIGSIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL----RQVTRYEQLR 175 +++NG P RR FLD + + + N +R+L QRNA L +V E L Sbjct: 121 AEMSVINGSPVERRRFLDNAICQADCRYLQSMLNYRRVLLQRNALLLQLKERVQSIEMLN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 ++L A I R + I + + +++ E Sbjct: 181 VLTEQLSEYAADIVFARLRFLDEILPGLKAILSSVSVKEEPRITYRSSLVPSVYALTKEE 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + E + + + TA GPH+ D+ + ++ S+GQ + + A+++A Sbjct: 241 LINYFREQYAKKKQDEIARGLTAGGPHRDDIVFFLNQHEIKKYASQGQQRSFLIAMKMAL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 + + + + + L DD SELD R +L + L + QVF++A H + Sbjct: 301 YGYFSDKLNEKPVCLFDDLFSELDRSRVEVLFALLASFG-QVFITATEKMHGPAV 354 >UniRef50_Q3IDE8 DNA replication and repair protein recF n=3 Tax=Alteromonadales RepID=RECF_PSEHT Length = 364 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 144/361 (39%), Positives = 210/361 (58%), Gaps = 6/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MSL+ L ++ FRNIE L G N + G NGSGKTS+LEAIY L HG++FR+ + + Sbjct: 1 MSLSHLSLKYFRNIEALTLEPVNGVNIIYGENGSGKTSLLEAIYYLSHGKSFRTSKHKSI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H+QE FV+HGR + IG++K + G++ ++I G K++ELA LMP+Q+ITPE Sbjct: 61 IAHQQEQFVIHGRKAIHDLSIPIGISKTQAGETNLKIQGKASRKISELAQLMPVQIITPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--EQLRPWD 178 ++L GGPK RR FLD G FH E FF W + ++LKQRNA L+ + +Q++ WD Sbjct: 121 SYSLFFGGPKERRKFLDLGLFHVEHEFFFLWQSFNKVLKQRNALLKSKPKNYFDQIKFWD 180 Query: 179 KELIPLAEQISTWRAEYSAGI-AADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 KE + LAEQI+ R Y + C + L SF GW++ ++ LE N Sbjct: 181 KEFVRLAEQINKLRMAYISRFKQQFFDKMCAELTLIRDLEISFNAGWKESESLSDALELN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD + +T+ GPHKAD G+ VE+ SRGQLKLL+ AL++ Q + E+ ++ Sbjct: 241 FERDARQGFTSKGPHKADFSFSVAGSSVENIFSRGQLKLLLYALKVTQNSLIESETDKQS 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQ---VFVSAISAEHVIDMSDENSKMFTVEKGK 354 + LIDD SEL ++ + + L SQ + + S V++ +MF V+ G Sbjct: 301 ILLIDDLPSELSEDTKEKVGQLLAHCSSQIFISSILSESISAVVEPMQRELQMFHVKHGN 360 Query: 355 I 355 + Sbjct: 361 L 361 >UniRef50_B8KLI8 DNA replication and repair protein recF n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KLI8_9GAMM Length = 370 Score = 287 bits (734), Expect = 5e-76, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 186/360 (51%), Gaps = 7/360 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L I RN+ A L N + G NGSGKTS+LEA + LG R+FR+ +I Sbjct: 4 LASLNIHHLRNLTEASLGPLSLHNVIYGINGSGKTSLLEAAHILGTARSFRAGGAKSLIT 63 Query: 63 HEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H ++ +V+ G + ++G+ + K G +R+ G V++LA +P+ LI + Sbjct: 64 HGEQTYVVQGNRESPGGGCVSLGVQRQKGGGMSLRVAGEPSRSVSQLADELPLLLINADS 123 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKE 180 F LL G P RR F+DWG FH E +R L QRN LR+ +L W ++ Sbjct: 124 FDLLVGEPANRRRFMDWGVFHVEHNLRDHRRRFQRALTQRNHLLRRGKLDASELEVWTRD 183 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 L AE +S R + A + + PE + +++RGW+ YA+ L+R+ Sbjct: 184 LAVHAELVSAGRDRFLAALKEVFEPLVNELAPEIGPVDLAYRRGWDASLGYADALQRSLA 243 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D++ +T GP +AD+R+ G DTLSRGQ KLL+CAL+LAQG+ L + G LY Sbjct: 244 SDQEQGFTQSGPQRADIRVTVGGYSAADTLSRGQQKLLICALKLAQGQILAGQRG-GVLY 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS---DENSKMFTVEKGKIT 356 LIDD SELD ER + L A + Q ++ +S + MF VE+G++T Sbjct: 303 LIDDLPSELDAERCERVCRALAAMRVQTLITCVSRSAIPVEWLGSGAEVAMFHVEQGRVT 362 >UniRef50_B7CCH5 DNA replication and repair protein recF n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCH5_9FIRM Length = 363 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 170/364 (46%), Gaps = 11/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPG-FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M++ +L FRN ET + P +FL G N GKT+++EAIY L H R+FR+ Q+ Sbjct: 1 MNVEKLTCFHFRNYETMSFSFVPKCIHFLYGKNAQGKTNLIEAIYFLSHLRSFRTNQMDS 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I H F + ++ R+ + + D Q R K ++ + L P Sbjct: 61 MIMHGCNEFCVQAIVESNHRKEELKVIVDHQKKHLFRF-QNPVKKYSDFIGIENAILFCP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWD 178 + +L PK RR F+D + + S+ ++LLKQRN AL+Q E L + + Sbjct: 120 DDLSLFTSSPKNRRRFIDMELMKLSRTYTSTLSSYQKLLKQRNQALKQSNIDECLVQIYL 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW----EKETEYAEV 233 ++I + I R E+ + + F + + + + ++ E Sbjct: 180 DQMIEVQSVIIKQRNEFLNSLMNKARELYPFFSNEKEEIGAKYMTFIPIDPDMKSHMKEA 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 ++ FE++++ T G H+ D+ + PV + S+GQ + + AL+L + + +S Sbjct: 240 YDKVFEKEKRYHQTLIGIHRDDILFELNENPVCEVASQGQKRSFVLALKLGLAQIIYEKS 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G+ + L+DD SELDD R+ L +L Q+F++ ++ + + + +EKG Sbjct: 300 GQYPILLLDDVFSELDDFRKRQLIEKL-PRDMQIFITTTERLNIN--WNREVRFYDIEKG 356 Query: 354 KITD 357 +I + Sbjct: 357 RIKE 360 >UniRef50_A4XFI3 DNA replication and repair protein recF n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XFI3_CALS8 Length = 349 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 11/339 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FRN G N ++G N SGKT++LEAIY G++F+ + + Sbjct: 1 MIIKSIYLENFRNHNERFFEFKDGINLILGKNASGKTNLLEAIYFCLCGKSFK-SKDTNL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + E F L + + E I D+ G ++ I+ ++++EL P+ Sbjct: 60 ISFDSEYFKLEASVLANDVEYGILCYVDRLGQKRIMINEKKINRLSELIEKFKFVYFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P + + ++ L RNA L+ + + + +D E Sbjct: 120 STELIKQDPKVRRKFLDMEVAKLYPYMIKTFQDYQKALMSRNAFLKSYDKKDIIDVYDIE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGW--EKETEYAEVLERN 237 L L QI R E ++ + + + S + F+ E EY L++ Sbjct: 180 LSKLGCQILKKREETIKRLSEATKEIWYKVFEDKSTIDIVFRPSIPSSSEEEYYSQLKKQ 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FE+D Q+ +T G H+ D + +G ++ S GQ+K A+ LA + + Sbjct: 240 FEKDVQMGFTTKGVHRDDFDVFINGQNAKEYASEGQIKFACIAISLASAKLF-----EKP 294 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + L+DD SELD E+R + K Q +++ + Sbjct: 295 VLLLDDIFSELDSEKRKNVLKLCKDY--QAIITSADEKD 331 >UniRef50_C8P205 DNA replication and repair protein recF n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P205_ERYRH Length = 361 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 82/363 (22%), Positives = 158/363 (43%), Gaps = 10/363 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRNI +L+ + N VG NG GKT+++E++ L GR+FR + Sbjct: 1 MKVKNLELKQFRNISNLNLSFNKNINVFVGDNGQGKTNIIESLVYLSSGRSFRVSSDEYL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++ E + ++ + + + G ++++ K+ E + L PE Sbjct: 61 IQYGNEFLSVIADIEDQNNTQNLKVVLSSAG-KYLQVNQQPLKKMTEFIGRCNVVLFNPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 + P+ RR +D+ + S +LL +RNA L+ + L + Sbjct: 120 DINFYSNSPRKRRREIDFELGKMSKRYLNQLSLSNKLLSERNAYLKNKNVDQDYLEILTE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVL---- 234 +L+ + I RA++ + + + ++ E + E L Sbjct: 180 KLVDASILIIEMRAKFVHALNPIINHYYHLLSDSKDHIVLHYKAPISLEGDLKEQLLSKM 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +F+RD T +G H+ D + PV + S+GQ ++L+ A +LA E + + Sbjct: 240 QDSFQRDCDFKVTQNGIHRDDFIFMINDIPVVNVSSQGQKRMLIIAFKLAIVELIFQSRK 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + +DD SELD+ RR + + L + QVF++ ++V S + +F V G Sbjct: 300 TYPILCLDDLFSELDNVRRERVLNVLHE-EMQVFITTTDLDYVK--SKRDKSVFKVVSGN 356 Query: 355 ITD 357 + + Sbjct: 357 VEE 359 >UniRef50_C5BKM1 DNA replication and repair protein recF n=1 Tax=Teredinibacter turnerae T7901 RepID=RECF_TERTT Length = 378 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 195/363 (53%), Gaps = 10/363 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L RL I +FRN+ +A L G N + G NGSGKTS+LE+I L HGR+FR+ + R+I Sbjct: 4 LRRLDISEFRNLRSATLQPGEGINLISGENGSGKTSILESISVLAHGRSFRTHKFRRLIN 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++++F L G++ E IGL++ GD ++RID H ELA +P+ ++ F Sbjct: 64 NDEKSFTLFGQIF-EGTTRNIGLSRASNGDIQIRIDSKAAHTATELAECLPLLVMNSASF 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPWDKEL 181 LL G + RR F DW FH + F W R +KQRN+ LR+ +L PWD+EL Sbjct: 123 QLLEGSGQVRRKFFDWLVFHVKQEFKHYWKLYARCIKQRNSLLRRDKITRSELLPWDQEL 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQF----LPEFSLTFSFQRGWEKETEYAEVLERN 237 A+ I + R+E + QF L+ ++ GW K Y E LE Sbjct: 183 TKAAQHIESMRSEVFELFQTHFLNEIGQFDFTETLGAELSCTYVSGWSKTGNYNEQLEDQ 242 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 FERD YT G HK+D++I P + LSRGQ K ++ AL LA+ +GR Sbjct: 243 FERDVAAGYTHIGSHKSDVKINLARVPAVEELSRGQQKSVIVALFLAEALVFRTTTGRTP 302 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS----DENSKMFTVEKG 353 ++L+DD +ELD++ ++ LK SQVF +AI + ++ DE+ +MF V+ G Sbjct: 303 VFLLDDLPAELDEKNLRIVGKALKNLGSQVFATAIDPKSILTGWELVDDESLRMFHVKHG 362 Query: 354 KIT 356 ++ Sbjct: 363 QVE 365 >UniRef50_B8FXW8 DNA replication and repair protein recF n=2 Tax=Desulfitobacterium hafniense RepID=RECF_DESHD Length = 365 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 89/366 (24%), Positives = 168/366 (45%), Gaps = 16/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++ FRN + ++ PG L G NG GKT++LE IY L G+++R + + Sbjct: 1 MEIKWLHLKSFRNYQDQEVDFRPGLTILQGENGQGKTNILEGIYYLLTGKSYRVHREQEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R + F L+G + R+ + + + ++I+ K++E + + +P+ Sbjct: 61 ARWGENEFHLYGDFIVQRRKLRLE-SHYQDKRKIIKINQIPCRKLSEYVGTINVVFFSPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLR 175 ++ GGP RR FLD + + ++L+Q+NA L+Q + Q+ Sbjct: 120 DLVMVKGGPAERRRFLDLHIAQHHSKHIQLLNAYNKVLQQKNALLKQGQGGSKSQIAQIE 179 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQ-----RGWEKETE 229 W+++++ + +I R E++ ++ + Q + LT + E Sbjct: 180 LWNEQILRIGSEIIRNRWEFTGLLSRKGQEIYGQISSGKEELTMDYHALGKNNLEEALAA 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + ++L + + GPH+ D+ + + S+GQ + ++ + +LA+ E + Sbjct: 240 FPKLLAEKMSLEMERKMVLIGPHRDDILFKLNERSARLYGSQGQQRSIVLSTKLAELEVI 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E G L L+DD SELD RR L K+ Q Q ++ SAE + S + Sbjct: 300 RQEKGDYPLLLLDDVLSELDRFRRDYLLDYTKSLQ-QTIMTMTSAETLT---QRASLLLK 355 Query: 350 VEKGKI 355 VEKG+I Sbjct: 356 VEKGQI 361 >UniRef50_Q31JS3 DNA replication and repair protein recF n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=RECF_THICR Length = 362 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 200/359 (55%), Gaps = 4/359 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + ++ FRNIE A L G N +VG N +GKT+++EAI+TL GR+FR+ + ++I Sbjct: 3 KILQFQLQHFRNIEQASLTFGEGLNLIVGDNAAGKTALIEAIWTLASGRSFRTAKPHQLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + Q VL G L +R IGL + ++IDG A+++ +P+QL+TPE Sbjct: 63 QQNQSELVLFGTLTEADRIHKIGLARTSD-KVTLKIDGELAKTQADMSAKLPVQLLTPES 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 LL GPK RR F+DWGCFH+ F W + +R LKQRN AL++ Q++ WD +L Sbjct: 122 HRLLEEGPKARRQFMDWGCFHHNADFIHLWRHYQRALKQRNHALKKRLPASQIQLWDAQL 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL--TFSFQRGW-EKETEYAEVLERNF 238 + AE+I RA+Y + + + C+ +PE ++ ++ GW + Y ++L NF Sbjct: 182 VDAAEKIDVIRADYITRLTPYLVEFCQALMPEITVSPECHYRPGWPKTAESYRQLLADNF 241 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 +D +T +G H+AD++ R +G LSRGQ KL +CAL LAQ + S + Sbjct: 242 AKDTLQGHTQYGSHRADIKFRFNGQEALMILSRGQQKLFVCALLLAQATLYQQHSQNPVI 301 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 LIDD +ELD + R L L Q +++ + + + + E +K++ ++ G++ + Sbjct: 302 MLIDDLPAELDAKHRETLLKLLNLLDIQHILTSTAQDLIPVLEPEKAKIWRIQHGELIE 360 >UniRef50_B0MRG1 DNA replication and repair protein recF n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRG1_9FIRM Length = 377 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 157/383 (40%), Gaps = 33/383 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL +++FRNI + N L G N GKT++ EAI +FR+ + Sbjct: 1 MQIKRLYVKNFRNIREQEFCFHENVNVLCGNNAQGKTNLCEAISLCMGP-SFRTSRQSSY 59 Query: 61 IRHE----QEAFVLHGRLQ---GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 I +E V+ + E I T +++ +G EL ++ Sbjct: 60 IPFSLDNSKEKCVIKMWFTTSFNTDSENLIEFTI-CNNKKEIKYNGLAIKSALELYGVLK 118 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-------R 166 + PE L+ G P+ RR +LD P S + LK +N L Sbjct: 119 YVVFIPEHLNLIKGVPECRREYLDSVAMMQTPVHLKKLSRYNKALKNKNNLLFGINFGDD 178 Query: 167 QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK 226 Q+ W+ L ++ R +Y + + + + L + Sbjct: 179 LSVIRPQIESWNSVLAAEGLNVTYGRLKYFSLLETIASQLYNELSGGEELKLKYYSSIFD 238 Query: 227 ETE------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 TE Y E L +F+R+ ++ YT G H+ D+ + D V++ S+GQ Sbjct: 239 STELKCEEINGLYNEYLERLNSSFQRELKMRYTVLGVHRDDMNLYIDNNDVKEFGSQGQQ 298 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + AL+LA+ E + ++ + ++DD SELD R+ + + + SQVF++ + Sbjct: 299 RSTALALKLAEAEIIRQK-DETPIMILDDVLSELDAGRQRFVLNHI--INSQVFITCCNI 355 Query: 335 EHVIDMSDENSKMFTVEKGKITD 357 V ++ +N K++ VE G T+ Sbjct: 356 NDVKEL--KNGKVWKVENGIFTE 376 >UniRef50_B7GUX7 DNA replication and repair protein recF n=18 Tax=Acinetobacter RepID=RECF_ACIB3 Length = 360 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 183/361 (50%), Gaps = 10/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL I RN++T L FN GANGSGKTS+LEAI+ L GR+FR+ Sbjct: 1 MHLTRLNIERVRNLKTVALHGLQPFNVFYGANGSGKTSILEAIHLLATGRSFRTHIPKNY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I++E + ++ + IG+ K G+ ++++G +LA L+P+Q I P+ Sbjct: 61 IQYEADDAIVFA----QSATEKIGMQKLASGEQLMKVNGDTVATQGQLAKLLPLQHIDPQ 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--QLRPWD 178 +++ G K RR LDW FH EP F+ AW R LKQRN L+ L PW+ Sbjct: 117 STDIIDHGAKPRRQLLDWLMFHVEPEFYFAWQYYSRALKQRNTLLKTRRNLSLADLEPWN 176 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNF 238 K L E + + R + Q LP+ + + G+ E + L Sbjct: 177 KMLSDYGEILHSQRLSIVEQWNVYFQNDLSQLLPDLEIELEYSPGFHTEQGLMQDLLNQH 236 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 ++D + YT +GPH+ADLR++ +D LSRGQ KLL+ AL+L+Q L + + Sbjct: 237 QKDIERRYTEYGPHRADLRLKTPFGHADDVLSRGQKKLLIIALKLSQIAMLHASNKET-V 295 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE---NSKMFTVEKGKI 355 L+DD +ELD + L RL SQVF++ + V + + ++F+VE G++ Sbjct: 296 VLLDDLTAELDLTAQQRLIERLSQLGSQVFMTTLDHASVKKHLHDLSISYQLFSVESGQV 355 Query: 356 T 356 + Sbjct: 356 S 356 >UniRef50_C5PLJ5 DNA replication and repair protein recF n=2 Tax=Sphingobacterium spiritivorum RepID=C5PLJ5_9SPHI Length = 371 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 90/367 (24%), Positives = 166/367 (45%), Gaps = 10/367 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N + L P N G NG+GKT++L+AI+ L +++ + + Sbjct: 4 MWLKQLSVLNFKNYTESALEFLPEVNAFAGENGAGKTNLLDAIHYLSLCKSYFNPIDSQH 63 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + F++ G + + R I + K + + + D ++A+ P+ +I+P Sbjct: 64 IKQGMDWFMVQGSFENDTRTDVISCSLKKNQKKQFKKNKKDYPRLADHIGQFPLVMISPN 123 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR----- 175 ++ G + RR F+D + + +++ QRN L+Q QL Sbjct: 124 DSMIITDGSEERRKFMDNVISQTDHHYLDKLITYNKVILQRNIMLKQARESGQLDLGLLE 183 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 + +L+ + QI R ++ + ++ ++L+ Sbjct: 184 VLNLQLVEVGAQIFEKRQQFMKDFLPEFEKHYHFLTESAEQVSLVYESPLMTIDFQDLLD 243 Query: 236 RNFERDRQLTYTAHGPHKADLRIRA-DGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 RN ERDR L T+ G HK DL +G P++ S+GQ K + AL+LAQ FL G Sbjct: 244 RNLERDRALERTSQGIHKDDLLFTIHEGMPLKKFGSQGQQKSFLIALKLAQYSFLQSRKG 303 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEHVIDMSDENSK---MFTV 350 + L L+DD +LD+ R L + Q+F++ +E V + +E ++ +F + Sbjct: 304 FKPLLLLDDIFDKLDERRTRKLMQMVSEDDFGQIFLTDTDSERVQRIFEEIAQPIRIFDI 363 Query: 351 EKGKITD 357 + G I D Sbjct: 364 KGGAIQD 370 >UniRef50_A1WWD8 DNA replication and repair protein recF n=1 Tax=Halorhodospira halophila SL1 RepID=A1WWD8_HALHL Length = 349 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 119/353 (33%), Positives = 178/353 (50%), Gaps = 8/353 (2%) Query: 4 TRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRH 63 RL + FRN+ L P N + G NG+GKTS+LEAIY L R+FR+ Q R+I Sbjct: 2 ERLEVHGFRNLADTQLRPHPHLNVVTGPNGAGKTSLLEAIYFLSRVRSFRTRQNDRLIGW 61 Query: 64 EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFT 123 E + +G + G +++R++G D H + LA +P+QL+ E Sbjct: 62 GAEEARVVAV----RGHDRLGAARTP-GHTRLRLNGADAHTRSALAARLPVQLMNTEHQR 116 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIP 183 LL GP+ RR FLDWG FH EP + + L+QRNAALR R + + W LI Sbjct: 117 LLLDGPRVRRQFLDWGTFHLEPDYRELAQRYQHALRQRNAALRVGDRRSE-QAWTPVLIR 175 Query: 184 LAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQ 243 A + R + + ++ +Q+L SL + RG E + VL+ ERDR Sbjct: 176 CAAAVDVARQRFIEALRPIWSEFARQWLGLESLELRYYRGAAAELPWERVLDEQLERDRT 235 Query: 244 LTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDD 303 +T GPH+ADL + D P D LSRGQ KLL+ AL +A+ + +R+ G + LIDD Sbjct: 236 AGFTHRGPHRADLILSRDRIPAADALSRGQQKLLVVALLIAEVKLWSRQ-GLTPVLLIDD 294 Query: 304 FASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 +ELD + + +QVF++AI + + + V +G+++ Sbjct: 295 LPAELDPAHLHTVLDTVTGDPTQVFLTAIDGAALPTDLPP-GQWYQVCEGRVS 346 >UniRef50_C8NAD5 DNA replication and repair protein recF n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8NAD5_9GAMM Length = 359 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 192/356 (53%), Gaps = 1/356 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L +L + + RN+ T L L P + G NGSGKT++LEAIY LG G++FR Q +I Sbjct: 3 RLRQLRLDNHRNLATTTLELHPRCTLISGKNGSGKTALLEAIYLLGRGKSFRENQTRHLI 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 H+Q L R++ E +G+ K + + ++R+DG + +A LA L P+Q++ + Sbjct: 63 AHDQPYLRLIARIEKNGEEHLLGIEKSAR-EHRLRLDGQNLKNLAALAALTPVQILNSDN 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 F ++ GP++RR +LD+G ++++P F AW LK RNAALRQ R L PW+ L Sbjct: 122 FAHIDQGPEHRRRYLDYGLYYHDPAFLPAWQRYNYALKNRNAALRQNWRAADLAPWNHIL 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 QI T R Y + + + + +QRGW A +L+ N ERD Sbjct: 182 GETGTQIDTLRRAYLEKLEDTLNTYHAELGGYERIHIHYQRGWPAGQPLAALLDANNERD 241 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 L +T G H+ADLR ADG + SRGQ K L+CAL LAQ +T +SG + LI Sbjct: 242 ALLKHTRDGIHRADLRYHADGRDIAHHYSRGQQKTLICALILAQTRLITADSGTAPIILI 301 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DD A+ELD R+ L L + SQ++++ I + + + + + +E G I + Sbjct: 302 DDIAAELDRARQEKLLQFLADSDSQLYITHIDGDLELPPALADHQRLHIEAGHIRE 357 >UniRef50_Q6MAG9 DNA replication and repair protein recF n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=RECF_PARUW Length = 359 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 101/359 (28%), Positives = 163/359 (45%), Gaps = 13/359 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L L ++ FRN E A L SP FN + G N GKT++LEAI+ L GR+FR+ + Sbjct: 1 MTLRSLYLQHFRNYEEAYLEFSPQFNLICGPNAKGKTTLLEAIHCLMIGRSFRTSHYPDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + E+F L + E + + + T ++ L L+P +ITP+ Sbjct: 61 IQQQFESFFLEAQFYKHGIEQTLKFGFHTTDRKIIY-NSTPLATLSNLLGLIPGVIITPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ G P+ RR FLD +P + + R LKQRN L+ + + W++E Sbjct: 120 DVQLVKGSPQLRRQFLDIQIAQVDPLYVHHLNRYGRALKQRNHLLKMKQQIS-IDSWEQE 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGW-------EKETEYAE 232 + A + R + + E LT ++ E + + Sbjct: 179 MTHSAAYLIQQRYQTITHLQNLAQKYYHLLSGENDLLTLEYRSIANSNLSIDEIKKLLVK 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG-EFLTR 291 L +N +R+ Q+ YT GPHK DL + G + S GQ + + AL A+ R Sbjct: 239 QLCKNRQREMQIGYTLSGPHKDDLFVAIGGRDIRYFASEGQQRSCVNALHFAEWNRLHQR 298 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 G L++IDD LD R+ L +L++ QVF++ + +D D + K+FT+ Sbjct: 299 GDGDFPLFMIDDIGMSLDSNRKDRLVEQLQSVG-QVFLTTTDPK-FLDHIDADKKIFTL 355 >UniRef50_A6NQE4 DNA replication and repair protein recF n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQE4_9BACE Length = 367 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 144/371 (38%), Gaps = 19/371 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + FRN + A SP N + G N GKT++LEAI L + R+ + Sbjct: 1 MIVKSITLDFFRNYPHLETAFSPDVNVICGENAQGKTNLLEAIGYLSTASSRRARYDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ + + + ER+ + + ++ +G ELA ++ PE Sbjct: 61 IQFGVDHAFVKAEVFSRERDFTLEARLGRSVRRQLLSNGVKLKTAGELAGVLNTVFFCPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLRP 176 L+ G RR FLD P + A + +RL +Q+ LR + L Sbjct: 121 DLMLIREGAAERRRFLDECICQLRPRYAAALAEYRRLHEQKTRILRDWEEKPSLLDTLDD 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW----------E 225 ++ + + +RA + + ++F L ++ + Sbjct: 181 FNLRMAQTGAILIHYRAHFVRRLRETAPPIHREFSGGREELGLKYETVSTVTDPEGGVKD 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + E + + + GPHK DL + G S+GQ + +L+LA Sbjct: 241 ILSALIAHQESHRRAELEARQCLSGPHKDDLTVELGGVAARQFASQGQTRTAALSLKLAA 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 E ++G + L+DD SELD R+ + +R+K QVF++ E + + Sbjct: 301 REIFYGDTGEWPVLLLDDVLSELDQRRQSFVLNRIK--GGQVFITCCEDEKLEHLEG--G 356 Query: 346 KMFTVEKGKIT 356 K+ + G + Sbjct: 357 KVLRIHNGALV 367 >UniRef50_A8RAI8 DNA replication and repair protein recF n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RAI8_9FIRM Length = 366 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 159/363 (43%), Gaps = 12/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT+L + D+RN E + L G + L G N GKT+VLEAI L R+ R+ + Sbjct: 1 MRLTKLRLHDYRNYEDLQITLKNGIHILSGKNAQGKTNVLEAILYLSTTRSHRTACDEDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ +EAF + ++ R+ + ++ +++G + + + KV++ + P+ Sbjct: 61 IKEGKEAFFIKAEIEKTNRKEELQISVNERGKN-LFMYKNPVSKVSDFIGEFNAVMFCPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 L N P+ RR F+D + ++LLK+RN L+Q E L Sbjct: 120 DMMLFNASPRVRRRFVDMELSKLSKTYVNTLFVAQKLLKERNRYLKQEHVNKEYLDVVTM 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQ---RGWEKETEYAEVL- 234 +LI + R + + A K+ + + ++ E E + L Sbjct: 180 QLIEATMVVMKQRHHFLKQLLTKCAQFYKRLSNDGTQIEVIYESCVPYTEDEQLLRDRLT 239 Query: 235 ---ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E++ ERD + T+ G HK D + +G V S+GQ + ++ AL++ + Sbjct: 240 EKYEKSRERDLAMRVTSVGIHKEDFIFQINGREVATYASQGQKRSILLALKVGMIYMIED 299 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM-SDENSKMFTV 350 + L+DD SELD +RR L L + Q+F+S E + + ++++ Sbjct: 300 IIHDYPVLLLDDVFSELDMDRRKELLHSLPN-EVQIFISTTDIEEFKHLDIHQPITIWSI 358 Query: 351 EKG 353 G Sbjct: 359 ASG 361 >UniRef50_Q254F3 DNA replication and repair protein recF n=10 Tax=Chlamydiaceae RepID=RECF_CHLFF Length = 367 Score = 284 bits (726), Expect = 5e-75, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 166/364 (45%), Gaps = 13/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M++ L +++FRN + A ++LSP N++ G N GKT++LEA+Y L GR+FR+ + Sbjct: 1 MNILSLRLKNFRNYKEAKISLSPNMNYIFGENAQGKTNLLEALYVLSLGRSFRTSHLTEA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I F L + + + + DK G + D + +++L ++P+ L + + Sbjct: 61 ISFGSAYFFLEMTCEKDGFSHKLSIYVDKHGKKILS-DQSPIKTLSQLIGMVPIVLFSSK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L++G P RR FL+ +P + S R L QRN+ L+ + L WD++ Sbjct: 120 DRLLISGSPSDRRLFLNLLLSQCDPQYKHTLSYYHRALLQRNSLLKT-KQISTLSVWDEQ 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----FSLTFSFQRGWEKE---TEYAE 232 L L ++ R + + L E F + Q KE E + Sbjct: 179 LATLGAYLTLSRFTCCEQLNQLVQKLWNNSLSEHIRIKFKSSLIKQDKLSKESIIEELRK 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + RD +L T+ GPH+ D + + PV S GQ L+ LRLA+ ++ Sbjct: 239 QLTSSLHRDLELGSTSVGPHREDFTLMINDLPVSQFSSEGQKHSLLAILRLAECLYIKNI 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L+ +DD S LD+ R L L T Q +++ H +NS++F V + Sbjct: 299 HNVCPLFCMDDIHSGLDNHRISQLLD-LAPTLGQTLMTSTHLPH--QTLSKNSRIFLVNQ 355 Query: 353 GKIT 356 +++ Sbjct: 356 AQVS 359 >UniRef50_Q48AS5 DNA replication and repair protein recF n=1 Tax=Colwellia psychrerythraea 34H RepID=RECF_COLP3 Length = 377 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 195/370 (52%), Gaps = 18/370 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 MS+ RL +FRN+ + + L P NF +G NGSGK+S+LEA++ LGHG++FR+ ++ + Sbjct: 1 MSVARLTTYNFRNLSSVAIDLHPKLNFFIGNNGSGKSSLLEALFFLGHGKSFRTSKVEHL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKD-KQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +E + FV+ + + + +GL+K+ + G + ++I+G +++ELA + +Q++TP Sbjct: 61 ACYETDNFVVSIK---DVNDLQLGLSKNLQTGVTLIKINGERHARLSELAKNIAVQIVTP 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 E F L GGPK RR F++ G FH + W R+LKQRNA +R W Sbjct: 118 ESFKLFFGGPKERRRFIELGMFHVKHDSSKQWREFNRVLKQRNACIRHNLDKATFDYWTG 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF--SLTFSFQRGWEKETEYAEVLERN 237 L+EQ++ R++Y + +++ + LP +T + +GW ++ + L + Sbjct: 178 LFCQLSEQVAEVRSQYITNLISELPYWLEILLPNIADKVTVQYLQGWPQKKNLMDSLNDS 237 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ER++ Y+ +G HK D++ +E LSRGQ KL + AL AQ + + R + + Sbjct: 238 HEREQAFGYSIYGAHKFDVKFLIAKQALESQLSRGQQKLFLLALTFAQAKLIARVNRVKP 297 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE------------NS 345 + LIDD +ELD R L+ L QV ++AI + D+ Sbjct: 298 ILLIDDIGAELDINSRESLSQALSILDCQVIITAIEEGVLQPFIDDVSVADKESSKKTKY 357 Query: 346 KMFTVEKGKI 355 MF V+ G I Sbjct: 358 HMFHVKHGGI 367 >UniRef50_D1RD56 DNA replication and repair protein recF n=1 Tax=Legionella longbeachae D-4968 RepID=D1RD56_LEGLO Length = 356 Score = 283 bits (724), Expect = 6e-75, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 191/360 (53%), Gaps = 13/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L I RNI +A L L+P FNF+ G+NGSGKTSVLEA Y L G +FR+ +I + Sbjct: 1 MILTELKIHQLRNIISAHLELNPRFNFIFGSNGSGKTSVLEAFYLLSCGHSFRTREIAPI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H Q + + R + +E I + K G ++V+++ ++LA+ +P Q+ + Sbjct: 61 ISHNQPSMTVFARGRNQE---TISIQKSYSGATQVKLNNQFCSTTSQLAYALPCQVFYSD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 F +++ GP RR LDWG FH + +F W KR+LKQRNA L++ + PWDK+ Sbjct: 118 LFQIIDAGPSVRRNLLDWGLFHVKHNYFNLWKEYKRVLKQRNALLKKRAPFTHYIPWDKQ 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET---EYAEVLERN 237 L LA Q+ R EY + + T + +GW+K+ EVL N Sbjct: 178 LDQLANQLHLLREEYFIQWEREFISVLSELSE-LGCTLKYYKGWDKKNLGKSLEEVLAEN 236 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 F+ D YT HG H+AD I D V+ +SRGQ K+++ AL+LAQ ++ C Sbjct: 237 FDSDCHKLYTQHGAHQADFIIEVDNNKVKHFISRGQQKIILIALKLAQANLVS----EDC 292 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH--VIDMSDENSKMFTVEKGKI 355 LYL+DD A+ELD+ + + S L Q +++ S + + S+ S + + G + Sbjct: 293 LYLMDDLAAELDEAHQRRIMSHLFTRNGQYIITSTSNSNVLFENFSNNFSSRYQINAGIL 352 >UniRef50_C7MEK9 DNA replication and repair protein recF n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MEK9_BRAFD Length = 414 Score = 283 bits (724), Expect = 8e-75, Method: Composition-based stats. Identities = 92/410 (22%), Positives = 152/410 (37%), Gaps = 57/410 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + DFR+ L + PG LVG NG GKT+V+EA++ L + R + Sbjct: 1 MQLTSLDLTDFRSYSRLTLPVRPGITVLVGQNGQGKTNVVEAVWYLATLSSHRVPHDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + ++ R + L ++ R+ G + ++ +L + L PE Sbjct: 61 VHRGESTAIVRASFVRAGRPLQVDLEITPGKSNRARLQGQNVPRLRDLLGEVRAVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 L+ P+ RR FLD F P F + ++ R+LKQR L+Q+ Sbjct: 121 DLGLIKADPEGRRRFLDELLFEIAPRFASVKADYDRVLKQRGNLLKQMRSMRRGSSGRSV 180 Query: 171 ---------YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT---- 217 L WD++L ++ R ++ + + + + Sbjct: 181 GGLDPAETASSTLEVWDQQLARYGAELLRARLHLVNRLSPHLGYSYLRVSTDEGAEQALD 240 Query: 218 --------------FSFQRGW---------------EKETEYAEVLERNFERDRQLTYTA 248 ++ E E+L + + T Sbjct: 241 LPPDQRGDVDSPAEIRYRSAVLDQLGAPAGSLPATREIHDGMLEMLAAGHDEEIDRGATL 300 Query: 249 HGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR----RCLYLIDDF 304 GPH+ D+ IR P + S G+ L ALRLA + L E G + ++DD Sbjct: 301 TGPHRDDMEIRLHDFPAKGYASHGESWSLALALRLASYDLLRLEEGDLGDGEPILILDDV 360 Query: 305 ASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 SELD RR L R+ T SQV ++ + + D + + V G Sbjct: 361 FSELDTRRRERL-GRIVTTASQVLITTANDGDIPDSLEGEIHVVDVTLGA 409 >UniRef50_C3MBZ9 DNA replication and repair protein recF n=6 Tax=Rhizobiales RepID=C3MBZ9_RHISN Length = 470 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 95/368 (25%), Positives = 151/368 (41%), Gaps = 14/368 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 LTRL + DFRN L L L G NG+GKT+++EAI L GR R V R Sbjct: 104 LTRLKLTDFRNYAALSLELDQRHVVLTGENGAGKTNLMEAISFLSPGRGLRRAAYADVAR 163 Query: 63 HEQ-EAFVLHGRLQGEERETAIGLT---KDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + F + ++G + IG ++ ++R++GT V EL + + +T Sbjct: 164 VGATDGFSVFAAVEGMDGPVEIGTGTAGAEEGQSRRLRLNGTPARTVDELTDHLRVLWLT 223 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPW 177 P L G RR FLD +P S R ++ RN L + L Sbjct: 224 PAMDGLFTGPSSDRRRFLDRLVLSLDPEHGRRASEFDRAMRSRNRLLSEFRPDPAWLTAI 283 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF-------SFQRGWEKETEY 230 ++E+ L ++ R E + A + + P L+ ++ E Y Sbjct: 284 EREMAGLGVSMALARLEMLGLLTALVERSQGGSFPSAGLSLAGFLDDCHGLPAYDLEERY 343 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEFL 289 +L RD T GPH++DL IR + + S G+ K L+ L LA + Sbjct: 344 LAMLSDGRGRDAAAGRTLDGPHRSDLLIRHREKDMEAERCSTGEQKALLVGLVLAHARLV 403 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +G + L+D+ A+ LD RR L R+ Q F++ + E + T Sbjct: 404 GDMTGHAPVLLLDEIAAHLDQGRRAALFDRVDELGGQAFMTGTDRAMFTAL-GERACYLT 462 Query: 350 VEKGKITD 357 V G++++ Sbjct: 463 VANGRVSE 470 >UniRef50_Q2S6G1 DNA replication and repair protein recF n=2 Tax=Rhodothermaceae RepID=RECF_SALRD Length = 412 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 95/374 (25%), Positives = 162/374 (43%), Gaps = 21/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FR ++ L+P N L GANG+GKT+VLEA++ L ++F + + Sbjct: 1 MILHTLRLRSFRAHAESEFDLAPSINLLYGANGAGKTNVLEAVHYLCLTKSFTASRDRYA 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +R + F + GR+ Q E + L + ++G + ++A++ +P+ + +P Sbjct: 61 VRKDAPYFEIEGRIGQVREEPMTVRLAYVPGEGKSIFVNGAELDRLADIVGTLPVVVFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR------YEQ 173 E + L GGP RR F++ + +R +QRN LR + E Sbjct: 121 EDYDLTAGGPSERRRFVNNILSQARSVYMETLMKYRRARRQRNEVLRSYKKRSAPPPDEL 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE------- 225 L PW ++L+ L +I R ++ A D+ + ++ T + + Sbjct: 181 LAPWTEKLVGLGSRIVHRRQQFLQAFADDLEEAYRRIDAVAERPTIEYDTIADLAPDATP 240 Query: 226 --KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E E+ L R ++R T GP + +L R D V S+GQ + AL+L Sbjct: 241 DAIEDEFRAALARKQGQERDRGTTLVGPQRDELVFRLDDLEVRRYGSQGQHRTFAMALKL 300 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEHVIDMSD 342 AQ +L + + L L+DD +LD ER G+ L++ Q V+A + Sbjct: 301 AQYFYLQQRNDTEPLLLLDDAFGKLDAERTGVFLDLLRSDAVGQSLVTATRRGPFEPALN 360 Query: 343 EN---SKMFTVEKG 353 + V G Sbjct: 361 AEPASHRALQVRPG 374 >UniRef50_Q0ACS5 DNA replication and repair protein recF n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACS5_ALHEH Length = 354 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 125/351 (35%), Positives = 192/351 (54%), Gaps = 7/351 (1%) Query: 5 RLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE 64 L RN++ +L G N +VGAN +GKTS+LEAIY + R+FR+ + ++I + Sbjct: 2 SLAAEGVRNLQPFELTPGAGINVVVGANAAGKTSLLEAIYFVARTRSFRATRTAQMIGNG 61 Query: 65 QEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTL 124 EA + + QG IG+ +D +++VR+DG DG ++ELA +P+Q+I E L Sbjct: 62 HEALWVRAQTQG----HTIGVARD-SQETQVRLDGRDGRSLSELARYLPVQVINSEHQRL 116 Query: 125 LNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPL 184 L GP RR+FL+W FH EP F T W R L+QRNAAL+ +D+ LI Sbjct: 117 LLDGPAVRRSFLNWAVFHVEPQFSTVWGRYVRALRQRNAALKAGE-SRLAWAYDEGLIET 175 Query: 185 AEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQL 244 A+ I R + + +++LP+ + ++ GW + A+ LE E DRQ Sbjct: 176 ADTIDRNRRHLIDALEPRWSALVRRWLPDEPVALHYRPGWRSDEPLADRLEAQRELDRQR 235 Query: 245 TYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDF 304 +T GPH+ADL R G + LSRGQ KLL+ AL LAQ +G+ L+DD Sbjct: 236 GFTNSGPHRADLSFRVAGVEAQHRLSRGQQKLLVLALLLAQAAVTHTLTGQSLTLLVDDL 295 Query: 305 ASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 A+ELD RR + + ++ +Q F++AI + ++ + ++ F VE+G+I Sbjct: 296 AAELDPARRAAVVEAIASSGNQAFLTAIEPGDIP-LAPDAAQWFHVEQGRI 345 >UniRef50_A1BCH3 DNA replication and repair protein recF n=1 Tax=Chlorobium phaeobacteroides DSM 266 RepID=A1BCH3_CHLPD Length = 365 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 79/351 (22%), Positives = 145/351 (41%), Gaps = 16/351 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTR+ +FRN + G L G+NGSGKT++LE I+ + F S+ Sbjct: 1 MRLTRITYNNFRNYRKMTFEPNAGITLLYGSNGSGKTNILEGIHYCALTKGFTSIADSDC 60 Query: 61 IRHEQEAFVLHGR-LQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I + + L L + + ++ ++ + ++ + K + +P +P Sbjct: 61 IFDSSDYYALQSTCLGENGSDIEVRISFSREKGKTLFVNNNEIKKFSNHVGTIPCITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLR 175 ++++G P RR F+D ++ + +R+L QRNA L Q++ L Sbjct: 121 PEISIVSGSPSERRKFIDNIICQSDKKYLKDLLTYRRVLLQRNALLAQISEKKSSINMLP 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 W + L LA I R E+ + D K+ ++ E Sbjct: 181 YWSENLSVLAASIVFKRLEFLDKFIDNFRDLFKKLSINEEPGIVYRSVLGRYDNIRNIDE 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 Y + N + + T+ GPH+ DL + ++ S+GQL+ + L+LA Sbjct: 241 LAALYYRKYDDNLRYELLRSQTSCGPHRDDLEFYINDKEIKKYASQGQLRTFLIGLKLAV 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 ++L + + + L+DD SELD +R + S L+ Q +++ Sbjct: 301 YDYLFDTTHEKPICLLDDIFSELDTQRTENILSILQTLG-QSIITSTVRRD 350 >UniRef50_D1VRK7 DNA replication and repair protein recF n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VRK7_9FIRM Length = 358 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 152/359 (42%), Gaps = 12/359 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L+ + + +FRN ++ L P N + G N SGKT++LEAIY +F++ + + Sbjct: 1 MNLSFIGLYNFRNYKSLKLNTGPNINIIYGKNASGKTNLLEAIYMTCKAYSFKNPRDNDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + + G + + + + K I+ + + + L +P Sbjct: 61 INFSKNEACILGTYENNCYKDNYRIEITRNNIKKYFINEQKTNS-KDFRQARHIVLFSPV 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ P RR F+D + + + S +++L +RN L+ L +D+E Sbjct: 120 DLNIIKNSPSDRRRFIDESLSNIDLSYDYYLSQYRKILMERNKLLKISKNMSLLEIYDRE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG-------WEKETEYAEV 233 L + +I R + + L ++ E + Sbjct: 180 LSKIGSKIIIMRLIAIKELNKYANKHYQNLSKNDRLKTTYLSTIPLSSNEEEIRENFYNF 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L+ N +D Q T+ GPH+ D+ + + + S+G+ + ++ +L+L++ + + ++ Sbjct: 240 LKLNQYKDFQRKNTSIGPHRDDIDFKINDKSTKAFGSQGEQRSVVLSLKLSEFDLIYKKF 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + + L+DD SELD++R L +K T Q F++ + + +S + +E Sbjct: 300 NDKSILLLDDVFSELDEKRTLYLLDSIKDT--QTFITTTEFKDYFKNLNISS--YNIED 354 >UniRef50_UPI0001C36FBE recombination protein F n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36FBE Length = 382 Score = 281 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 160/376 (42%), Gaps = 23/376 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T I F+N++ A P +N +VGAN GKT++LEA++ L ++FR + Sbjct: 1 MIVTYAEIDGFKNLKGVSFAPDPKYNIIVGANAQGKTNLLEAMWILSGCKSFRGSKEKDY 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD--SKVRIDGTDGHKVAELAHLMPMQLIT 118 I + + ++Q RE I K G+ + ++G L + Sbjct: 61 ICLDGQRMSSAVKVQDSVREQKITFEMAKGGNSPKLIHLNGVKQRGTRALFDVFKCIAFI 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQL 174 P+ ++ G P+ RR+F+D P F + ++ QRNA L+++++ + L Sbjct: 121 PDDTDIIKGSPEKRRSFIDMAASQLNPMFVMHLNKNNAIMNQRNALLKEISQRNASADVL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQR----------- 222 WD++ IS R EY + I L+ ++ Sbjct: 181 EIWDRQASKEGAVISWMRNEYVSKINEICGRLYNTISGGAEELSLEYRSNVYKPEDFEKP 240 Query: 223 -GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 G E E Y L E D + T G ++ ++ I+ +G D S+GQ+K + Sbjct: 241 IGEEAEELYYRRLRETSEYDIRTGSTHSGVNRDEISIKINGVSARDFGSQGQIKSAALVM 300 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 +LAQ E ++S + +DD ELD+ R+ + ++ QVFV+ + ++ Sbjct: 301 KLAQAEIYMKKSKDAPVVFLDDVMGELDENRQRFVFDIIRDM--QVFVTTPNESALLPEI 358 Query: 342 DENSKMFTVEKGKITD 357 K+ + G+IT+ Sbjct: 359 --KGKILRISGGRITE 372 >UniRef50_C7PUX6 DNA replication and repair protein recF n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUX6_CHIPD Length = 360 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 82/354 (23%), Positives = 157/354 (44%), Gaps = 7/354 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L ++ + F+N + + G NGSGKT++L+AIY + +++ + + + Sbjct: 4 LKKISLVQFKNYSGKSFSFHKRIVGITGRNGSGKTNLLDAIYYICFTKSYFTSSEAQNTQ 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 ++ F L G + + +E I T K G + ++ + ++ P +I P+ Sbjct: 64 YQTNGFRLEGFMDRDHQEGKIVCTL-KDGKKEFALNDEAYERFSQHIGRYPAVMIAPDDA 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQLRPW 177 ++ GG + RR +LD PG+ +++L+Q+N L+ ++ L + Sbjct: 123 EIILGGSEERRKWLDALLCQLHPGYLDHLITYQKILQQKNTLLKTMNGQGGSQDTLLDIF 182 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D++L+ + WR + G + + + E + E+L N Sbjct: 183 DEQLVKHGTPVFEWRRAFLPGFIQQVQKLYDYLAGKHETVNIQYQSGLHEQTFTELLAAN 242 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +D + T G HK DL+ D P++ + S+GQ K + AL+LAQ E + Sbjct: 243 RYKDMMMQRTTGGIHKDDLQFVLDDHPMKTSASQGQRKSFLFALKLAQFEVIKEHKKFPP 302 Query: 298 LYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAEHVIDMSDENSKMFTV 350 L L+DD +LD +R L + + + QVF++ A+ ++ ENS F + Sbjct: 303 LLLLDDVFEKLDQDRVSRLINLVSSPVYGQVFITDTHADRILAAFKENSDNFQL 356 >UniRef50_Q1B043 DNA replication and repair protein RecF n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1B043_RUBXD Length = 374 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 9/362 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FRN A LSPG N LVG N GKT++LEA+ + G + R+ V+ Sbjct: 4 HIRAIRLVNFRNYAGATALLSPGLNVLVGENAQGKTNLLEALAFVVSGSSPRTPNDSEVV 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLM---PMQLIT 118 R + + R+ E + + ++ +DG +A A + Sbjct: 64 RWGEGFVRVEARVVDGGHERRLAVGYAPGSRKRLTVDGAPVESLARYAAGVAGVRAVTFF 123 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQL 174 P+ ++ G P RR+FLD P + A + R ++QRN LR++ L Sbjct: 124 PDDLRVVKGSPSDRRSFLDALLSSLRPAYARAAAEYARAVQQRNQLLRRIRDGLSSERTL 183 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 WD++++ L + RA +A + + + + YA+ L Sbjct: 184 ATWDRKVVELGLVLLEGRAAAAAPLDEHFRASMRALYGPQKAAVGYSYSA-TPERYAQAL 242 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 D + T+ GPH+ DLRI +G + S+GQ +L AL+ A +++ +G Sbjct: 243 REAHSADIERGITSVGPHRDDLRILLEGVDLTTYGSQGQQRLATLALKFAARDYIRDATG 302 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + + L DD SELD+ RR LA + +Q +S + + + +++ + G Sbjct: 303 QDPVLLFDDVMSELDERRRDYLAGCFLES-TQAVISTTNLRYFEPGALRRARVLGISGGS 361 Query: 355 IT 356 I+ Sbjct: 362 IS 363 >UniRef50_D1AIS9 DNA replication and repair protein recF n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AIS9_SEBTE Length = 362 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 77/366 (21%), Positives = 167/366 (45%), Gaps = 19/366 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +FR +E + P FN + G NG GKTS++EA+Y L G++FR+ ++ + Sbjct: 1 MKLKQLSLNNFRCLENKKIEFDPDFNLIYGKNGQGKTSLIEAVYFLATGKSFRTKKVKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +++ +++G + + I + + + +D K + ++ + PE Sbjct: 61 TSYDKIRTIVYGSFESKLSGKTIAIDFN-NDKKEYYVDKNK-TKYIDYVGILNVISFIPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDK 179 ++ G P RR F ++ + + + +++LK RN +++ ++L +++ Sbjct: 119 DIEIIIGNPSVRRGFFNYEISQTKNIYLKTLVDFEKILKTRNKLIKERKTNKELYHIYNE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQR---------GWEKETE 229 + I +I R EY I+ + ++ L + E + + Sbjct: 179 KFIEEGSKIILMRKEYVKNISRLLNLNYRKLFDANSELRLKYDSFIDNIDKMTLEEIKEK 238 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 + E + +R+++ YT GP K D +G + S+G+ K ++ +L++A+ + L Sbjct: 239 FREETVKKHDREKRYGYTLVGPQKEDFVFELNGKNAKAFSSQGEKKSIIFSLKIAEIDML 298 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E ++LIDD +S D+ R+ + + K Q F+++ + K Sbjct: 299 IKEKNEIPVFLIDDISSYFDEIRKNSILNYFKNKNIQCFITSTEKLDI------EGKKIY 352 Query: 350 VEKGKI 355 ++KG+I Sbjct: 353 IDKGRI 358 >UniRef50_Q4JYF5 DNA replication and repair protein recF n=14 Tax=Actinomycetales RepID=RECF_CORJK Length = 425 Score = 279 bits (715), Expect = 7e-74, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 160/406 (39%), Gaps = 56/406 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + ++R+ E DL LSPG G NG GKT+++EA+ L H + R + Sbjct: 1 MYVSNLRLSNYRSWEELDLQLSPGITIFSGPNGHGKTNIVEALGYLAHLSSHRVNSDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +E + RE L +G ++ I+ + +L ++ L +PE Sbjct: 61 VRRGEEIANISATAVNNGRELTAHLAIRARGSNRAHINRAAMNSQRDLLGVVRTTLFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------------- 167 L+ G P+ RR FLD P ++ + L+QRNA LRQ Sbjct: 121 DLALIRGEPEQRRHFLDAIMVARYPRLAAVKADYDKALRQRNALLRQSAFALRLVVGAPK 180 Query: 168 --------------VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE 213 + L WD +L L QI + R + +A + T + P+ Sbjct: 181 GASHNLSEDIKADAESALATLDVWDSQLAALGAQIMSARVQIVHDLAPHLQQTYQSLAPQ 240 Query: 214 FS-LTFSFQRGWE--------------------------KETEYAEVLERNFERDRQLTY 246 S+ + E + ++ + Sbjct: 241 SRPAHMSYTSTIDVELADLGIRLGVSEPNQPTALLSPEIAEATLLQAFANKRPQEVERGT 300 Query: 247 TAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFAS 306 T GPH+ D+ + P + S G+ +LRLA F+ R G + ++DD + Sbjct: 301 TLLGPHRDDVNLILGHQPAKGYASHGESWSFALSLRLAAF-FMQRGDGVEPVVILDDVFA 359 Query: 307 ELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 ELD RR L + + + QV ++A E + + + +K++T+++ Sbjct: 360 ELDSSRRQHLVDLISSAE-QVLITAAVDEDIPEALRDVAKIYTIDE 404 >UniRef50_A4SC23 DNA replication and repair protein recF n=3 Tax=Chlorobium/Pelodictyon group RepID=RECF_PROVI Length = 371 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 83/362 (22%), Positives = 151/362 (41%), Gaps = 17/362 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +FRN + G N + G NGSGKTS+LE I+ + F S G Sbjct: 1 MRLRSIQFENFRNHRSFSFEPEDGINLIYGQNGSGKTSILEGIHYCALTKGFVSAADGEC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + F+L + ETA+ L+ K+ K++IDG + + +P +P Sbjct: 61 LSFSAGYFLLTALFESSSGIETAVRLSYTKESGKKLQIDGNELKPFSLHIGSIPCISFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQL 174 +++G P RR FLD ++ + +RLL+QRNA L+Q L Sbjct: 121 PEIVIVSGPPGERRRFLDNAVCQSDRRYLDNLLIYRRLLQQRNALLQQLSQSPGKDRSML 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ----------RGW 224 + W + L A ++ R + A + + + ++ Sbjct: 181 QLWSENLASSAASVTAGRVRFLAEFHPFVELLHRDLSGGQMPSIEYRSTIGRLLEPVPES 240 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + + + N +++ T GPH+ +L +DG + S+GQ + + +L+LA Sbjct: 241 ELRERFLQRFQENEQQEILRGQTLSGPHRDELIFLSDGRESKRYSSQGQQRTFLISLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 ++ + G + L+DD SELD +R + L+ Q +S+ ++ + + Sbjct: 301 LFQYFNEKIGETPICLLDDIFSELDGKRTAAVLDILEGCG-QTLISSADLKNHPGSAVHH 359 Query: 345 SK 346 + Sbjct: 360 LQ 361 >UniRef50_Q2SQZ4 DNA replication and repair protein recF n=1 Tax=Hahella chejuensis KCTC 2396 RepID=RECF_HAHCH Length = 375 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 200/371 (53%), Gaps = 15/371 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+R+ + RNI + L S G NGSGK+S+LE +Y LG G +FR+ ++ Sbjct: 1 MGLSRIAFTNLRNISSLKLDTSARLLLFHGNNGSGKSSLLEGVYLLGRGASFRTKELDYA 60 Query: 61 IRHEQEAFVLHGRLQGEE--RETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLI 117 + H + V G E+ + IG+++ K G ++VRI+G ++ELA +P+ ++ Sbjct: 61 VSHLSDEMVCFGEAVNEDAGKSFRIGVSRQKTGKLTRVRINGESARTLSELAAALPILIV 120 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 TP+ F +NGGP RR F+DWG FH E F W N ++LL QRN L+ +L Sbjct: 121 TPDTFGFINGGPGERRRFVDWGVFHVEHQFKVVWQNWRKLLLQRNKLLKSGNISRSELSA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-----FSLTFSFQRGW-EKETEY 230 WD + + +++IS +R Y A + + ++ K+ + LT + GW + + + Sbjct: 181 WDNQYVAYSDEISRYRDAYFAELKEILIESLKESSEQTRDIGDKLTITLSNGWYQNDVNH 240 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + L + E D + +T GPH+AD++++ G ++ LSRGQ K L+ L L+Q E L Sbjct: 241 MDQLASSVESDVKKGFTTLGPHRADIKVKVGGVHAKEVLSRGQQKTLITHLYLSQLEILR 300 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE-----NS 345 R + +R + LIDD +ELD + L +R+ +QVFV+ + + + ++ Sbjct: 301 RRTNQRPIVLIDDVGAELDTGNQVTLLTRMLEKGAQVFVTVLDKQQSEYLFGHFNQEYDT 360 Query: 346 KMFTVEKGKIT 356 +MF VE+G +T Sbjct: 361 QMFHVEQGAVT 371 >UniRef50_B4S937 DNA replication and repair protein recF n=2 Tax=Chlorobiaceae RepID=RECF_PROA2 Length = 370 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 75/353 (21%), Positives = 140/353 (39%), Gaps = 16/353 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I++FR + S G N + G NGSGKT++LEAI+ + F + Sbjct: 1 MRLDEIKIQNFRKHSELIFSPSEGINLIFGPNGSGKTNILEAIHYCALTKGFNRTTDRQC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + E+F+L + + + + G + ++ + K + L L+P L +P Sbjct: 61 MNFSAESFLLKSLFTSDTGCQYRVHVDFSTNGGKSISLNNSQLEKFSALIGLIPCILFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----QLR 175 T+++G P+ RR FLD + +R+L+QRNA L + Sbjct: 121 AEITIVHGSPQERRRFLDNALCQISKSYLEQLLQYRRILQQRNALLHSSWDRSSPAPDMN 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE-------- 227 W + L I R ++ ++ +++ K Sbjct: 181 IWTELLAESGAFIIKERMDFLDEFQPYFSNAYAILDTGEIPRLTYRSSLGKALVSSDRAG 240 Query: 228 --TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 +++ T GPH+ ++ DG+ V+ S+GQ + + AL++A Sbjct: 241 IADSLMHRFGEIQHQEQVRKQTLLGPHRDEILFYLDGSDVKKYASQGQTRTFLIALKVAL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 FL + G + ++L+DD SELD R + + Q +++ + Sbjct: 301 QRFLFDKKGEQSIFLLDDIFSELDQRRVERVLEMIAGFG-QSLITSTEKTGLS 352 >UniRef50_B3QWU7 DNA replication and repair protein recF n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=RECF_CHLT3 Length = 368 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 87/359 (24%), Positives = 144/359 (40%), Gaps = 17/359 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L I FR+ + A G N + G NG+GKT++LEAI+ ++F S Sbjct: 1 MKLFKLSIHGFRSHQDAVFLPHDGINLIYGKNGTGKTNLLEAIHYTCLTKSFLSTSDSDA 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F L LQ + E E+ + + V I+ T +++ P ++P Sbjct: 61 LHFQAGHFELEAVLQSDSENESKVRVYYSPAEGKHVFINKTPLESFSKIVGEFPCVALSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----QLR 175 L G P+ RR FLD + + +R+L QRN L + +L Sbjct: 121 YDIALTQGSPQERRRFLDASISQTNKAYLADLLSYRRVLAQRNKLLADMKHRTFSSPELD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-----------EFSLTFSFQRGW 224 W L LA I R + A + + F E SL + Sbjct: 181 VWTASLSALAASIIFRRIHFVRDFAQYLENAYADFQSIDETPGLTYKTELSLNENSFSEA 240 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + +E E + + T GPH+ DL + + S+GQ K + L+LA Sbjct: 241 ELAKQISEKFEEMKFDELRRGLTLFGPHRDDLAFSINNLSLRKYASQGQHKTFVICLKLA 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAISAEHVIDMSD 342 Q ++ + ++L+DD SELD +R L L + + Q F++ + ++ Sbjct: 301 QYFYICELLSEKPIFLLDDVFSELDSQRAEELVRILSSKRSGQSFITTTERKDFAEVKQ 359 >UniRef50_C1B7T0 DNA replication and repair protein recF n=47 Tax=Actinomycetales RepID=RECF_RHOOB Length = 410 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 93/402 (23%), Positives = 156/402 (38%), Gaps = 50/402 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +RDFR+ + L L PG VG NG GKT+VLEA+ L + R + Sbjct: 1 MFVRALSLRDFRSWDALGLNLRPGCTVFVGPNGHGKTNVLEALGYLSTLSSHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + RE + L ++ ++ RI+ + + E+ ++ L PE Sbjct: 61 IRTGTAQAFAGATVVNTGRELTVDLELNEGKSNRARINQSPTRRPREILGILQTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ------------- 167 +L+ G P RR +LD P ++ +R+L+QR+A L+ Sbjct: 121 DLSLVRGDPGDRRRYLDELLTSRIPRMAAVRADYERVLRQRSALLKTAGGALRRSSRGGG 180 Query: 168 ------VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSF 220 + L WD L Q+ R +A +A++ + PE + + Sbjct: 181 RPSEDGASALATLEVWDGHLAAHGAQLLAGRLHLVHDLAPHLAESYQSLAPESRPASIRY 240 Query: 221 QRGWEK---------------------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIR 259 + E + + L ++ + GPH+ DL + Sbjct: 241 RSSLGSSLPPEFTAPARAPEAGDIAFLEERFLQELSVMRSKEIERGVCLVGPHRDDLELH 300 Query: 260 ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASR 319 P + S G+ +LRLA L G + ++DD +ELD +RR LA Sbjct: 301 LGDTPAKGFASHGESWSFALSLRLAGFALLRA-DGSDPVLMLDDVFAELDRKRRRALAKV 359 Query: 320 LKATQSQVFVSAISAEHVIDMSDENSKMFTVEK-----GKIT 356 + QV ++A E V + ++ F VE G+I+ Sbjct: 360 ALDAE-QVLITAAVPEDVPEEL--DAVRFGVEARDTDRGRIS 398 >UniRef50_B1C9C6 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9C6_9FIRM Length = 366 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 83/368 (22%), Positives = 161/368 (43%), Gaps = 19/368 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +FRNIE + + + +N G N GKT+ LEA+ +G + R Sbjct: 1 MYIENIEITNFRNIEKINTSFNKKYNIFYGKNAQGKTNFLEALSLTLNGMSHREKNTSNF 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I++ ++ ++ ++ E+ +T I + K I+ + EL + + TP Sbjct: 61 IKNGEDFSLISAKVIKEDDIDTFIKCVI--KDKRKYEINSSPIKSRTELLREYNLVMFTP 118 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY----EQLR 175 E ++ G P RR FL+ H P + +A + LKQRNA LR ++ L Sbjct: 119 EDLKIIKGYPADRRKFLNESISHIFPSYHSALRKYNKALKQRNAILRDYSKRNIASSLLE 178 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW--------EKE 227 +D+ L + I R I + K+ + + F + + + Sbjct: 179 VYDETLYTIGSDIIKIRINVLKKIEKITNELNKEVSKDEEVRFFYSSNVLENAKDLKDIK 238 Query: 228 TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 + Y + L+ + D T G H D+ I + + S+GQ + + ++L+ + Sbjct: 239 SLYKKALKNSRNDDLMKGSTTIGVHHDDINIFLNDLDTKKFASQGQQRSISLCMKLSLIK 298 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 L + + L+DD S+LD R+ + + +K T Q F++ ++ + D+ ++ K+ Sbjct: 299 LLHDKFDDYPIVLLDDVMSDLDKFRQKQILNLIKDT--QSFITCVNYSFLEDI--DDYKI 354 Query: 348 FTVEKGKI 355 + +EKG + Sbjct: 355 YKIEKGNL 362 >UniRef50_A3HVG9 DNA replication and repair protein recF n=1 Tax=Algoriphagus sp. PR1 RepID=A3HVG9_9SPHI Length = 366 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 153/364 (42%), Gaps = 9/364 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F+N E L SP N +VG NGSGKT++L+ I+ L ++ Sbjct: 1 MHLKSLDLLQFKNHEKTQLVFSPQINCIVGLNGSGKTNILDGIHYLSLTKSAVQSSDSLN 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + H+++ F + G + E + + T + ++ +G K +E L+P+ LI P+ Sbjct: 61 VLHDKDFFAIKGHFEIESKPLEVRCTVELGKKKQIFQNGKALDKTSEHVGLLPLVLIAPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-----VTRYEQLR 175 L+ GG RR F D + + LKQRNA L++ L Sbjct: 121 DTDLIRGGSDGRRKFFDGLLSQLDRNYLNQLIRYHHFLKQRNALLKKFAETGRRDLTLLG 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLE 235 +D+E+I L++ I+T RAE +A + +++ Sbjct: 181 SYDEEMIILSKAIATRRAELLEEVAPMLQSHYAAISQGQEKVTIVYETEALREDFSNYFS 240 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ++D + G HK D P+ S+GQ K + +L+LAQ + G Sbjct: 241 SLRKKDFITKNSNAGIHKDDYSFLIGDHPIRKIGSQGQQKSFIISLKLAQFQIFENAKGE 300 Query: 296 RCLYLIDDFASELDDERRGLLASRLKA-TQSQVFVSAISAE---HVIDMSDENSKMFTVE 351 + L L+DD +LDD R + + T Q+F++ E ++ D F +E Sbjct: 301 KPLLLLDDIFDKLDDTRIAQMMQLISQHTFGQIFLTDARPERSQKILSQLDSEVFFFELE 360 Query: 352 KGKI 355 KG + Sbjct: 361 KGNV 364 >UniRef50_C9RA71 DNA replication and repair protein RecF n=1 Tax=Ammonifex degensii KC4 RepID=C9RA71_AMMDK Length = 358 Score = 276 bits (707), Expect = 7e-73, Method: Composition-based stats. Identities = 96/363 (26%), Positives = 168/363 (46%), Gaps = 18/363 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FRN + S G N L G N +GKT++LEA+Y + GR+FR+L+ + Sbjct: 1 MWIRSLFLRNFRNYCELEWEPSSGINLLKGPNAAGKTNLLEALYFVLCGRSFRTLREEEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + ++ G++ E + K+G + G + + + L PE Sbjct: 61 VRTGETTTLIKGKIATAWGEIETEVRF-KKGTKLLFYQGKPASR-RDFPGEKVVLLFRPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 ++ G P RR F + PG+ + +R L+QRNA LR + E+L W + Sbjct: 119 DLLVVTGTPAERRGFFNRVLAKLVPGYEEVLTRYQRALEQRNALLRLPEKKGEELEIWTE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-----QRGWEK--ETEYAE 232 L+ + R E I + ++ + + L + EK ++AE Sbjct: 179 ALVSAGALLYRLRVEGLGLIGPLTSSLYRELVGK-KLVLRYATNAVSPAKEKPLAEQFAE 237 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L E+++ L T GPH+ D +G + SRG+++ + AL+LA+ + L + Sbjct: 238 ALSALAEKEKVLGQTLVGPHRDDFLFIVEGEDLRYKGSRGEVRAAVLALKLAEAKLLEKM 297 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 +G R ++ +DD SE D +RR LA L+ Q FV++ E + F +E+ Sbjct: 298 TGERTIFFLDDVFSEFDPQRRRALALYLEER--QSFVTSAEPE-----LKLPGRTFLIEQ 350 Query: 353 GKI 355 G++ Sbjct: 351 GRL 353 >UniRef50_Q602N2 DNA replication and repair protein recF n=1 Tax=Methylococcus capsulatus RepID=RECF_METCA Length = 359 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 182/356 (51%), Gaps = 2/356 (0%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L +L I D RNIE+A L+ G N L GANGSGKTS+LEAIY L G++FRS Q GR+ Sbjct: 1 MALLKLDIADVRNIESASLSPGEGLNLLFGANGSGKTSLLEAIYLLSRGKSFRSPQSGRI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR ++ + G + A+G+ + + +VR+ G A+L L P LI P Sbjct: 61 IRFDRPCLTVSGSIGRPGAGIAVGVRLGRS-EKEVRVGGRSCDSSAQLIRLFPAVLIHPA 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 LL G P++RR LDWG FH E G+ R L+QRNA LR L W E Sbjct: 120 SVALLEGPPRWRRQMLDWGVFHVEQGYLDLLRRFSRTLEQRNAVLRGDAPGSSLAAWSGE 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L I+ R+ Y I + L + + GW YA+ L + Sbjct: 180 LARWGTMIAELRSSYLDRIRMHFGEMVSALLGRTDVELVVRPGWRAGWSYADALAASQPT 239 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 DR+L YT GP K D + G P D LSRGQLKLL AL LAQ L + R L Sbjct: 240 DRRLGYTEPGPQKGDFAVLVGGRPARDYLSRGQLKLLTYALLLAQAGLLEADQPGRVCLL 299 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISA-EHVIDMSDENSKMFTVEKGKI 355 +DD ASELD + L S +K+T Q FV+ A + V + +++F VE+G+I Sbjct: 300 VDDIASELDSRNQERLLSLVKSTGLQSFVTFSGATQGVAAVVGRTARVFHVEQGRI 355 >UniRef50_D2QG11 DNA replication and repair protein RecF n=4 Tax=Sphingobacteriales RepID=D2QG11_9SPHI Length = 368 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 87/366 (23%), Positives = 153/366 (41%), Gaps = 16/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + +F+N E S N LVG NGSGKT++L+A+Y L ++ Q Sbjct: 1 MHLEKLSLTNFKNYEDVRYTFSRQVNVLVGPNGSGKTNLLDAVYFLSLSKSAFQSQDAMS 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I H+ + F++ G + ++R I ++ + + D +++E P+ L+ P Sbjct: 61 ILHDTDYFIIDGIFEEHDDRTVQITISLQRGQRKVLMADKKPYERISEHIGRFPVVLVAP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-----RQVTRYEQL 174 L+ + RR F D +P + + +++LKQRN+ L R + L Sbjct: 121 NDTDLVREHSEDRRHFFDGVLSQLDPEYLRNYLMYQQILKQRNSLLKLFAERNQVDNDLL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVL 234 +D+ L+ L ++I R ++ + +A+ Sbjct: 181 DTYDEPLLELGQKIHDRRRQFIDEFLPGFRSHYAYLSDDREEVTIQYESEVSNPGFADEF 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRAD------GAPVEDTLSRGQLKLLMCALRLAQGEF 288 RD L T G HK D + P++ S+GQ K + AL+LAQ Sbjct: 241 RHFRRRDTVLQRTTMGIHKDDYSFIIESGNGQPPVPLKKFGSQGQQKTFVIALKLAQFAQ 300 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRL-KATQSQVFVSAISAE---HVIDMSDEN 344 L E + + L+DD +LDD R G L ++ + Q+F++ E ++ + Sbjct: 301 LQAEKDVKPILLLDDIFDKLDDRRIGKLIQQMDEGVFGQLFITDARPERTRQLLTNVKAD 360 Query: 345 SKMFTV 350 K F + Sbjct: 361 IKFFEI 366 >UniRef50_C8WIM8 DNA replication and repair protein recF n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIM8_EGGLE Length = 420 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 83/367 (22%), Positives = 147/367 (40%), Gaps = 20/367 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + + +FR+ E DL LVG N +GKT+V+E I L +FR + +++R Sbjct: 5 IAHISFLNFRSYEAFDLDGIGPLTVLVGPNAAGKTNVVEGIGLLTAQSSFRHAPVDQLVR 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 L + R+ + + +G K ++G + A+L L+P TP+ Sbjct: 65 AGAPFARLTADVTDGSRQLELAVQM-AEGKKKHLLNGKP-KRTADLKGLVPSVTFTPDDL 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 L G RRA LD + + +++L+ +N L+ + ++ L+ Sbjct: 123 ELAKGAMSVRRAALDALGSQLSANHYLIRRDYEKVLRHKNRLLKDEAPAALVGAMNETLV 182 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKE-------------- 227 Q+S +RA +AA MA + L F WE+ Sbjct: 183 TCGAQLSCYRAALFEKLAASMASYYAEITDGHERLDAGFVPSWEEHDPLSFATRTFGRDE 242 Query: 228 --TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 A+ L R +R GPH + DG S+GQ + ++ A +LA+ Sbjct: 243 AREALADALARRGGEERVRKRALVGPHADRIEFFIDGKNAALFGSQGQQRSVVLAFKLAE 302 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + ++ + L+DD SELD RR L + + Q F++ + + D + Sbjct: 303 ATLIQDILRQKPVLLLDDVMSELDAARRRALVAFISG-DIQTFITTTNLAYFDDDLLGGA 361 Query: 346 KMFTVEK 352 ++ +EK Sbjct: 362 RIVELEK 368 >UniRef50_A8SBV6 DNA replication and repair protein recF n=3 Tax=Ruminococcaceae RepID=A8SBV6_9FIRM Length = 373 Score = 274 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 89/376 (23%), Positives = 162/376 (43%), Gaps = 27/376 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L ++++RNI A L + G NG GKT++LEAI+ L G++FR + + Sbjct: 1 MRLLSLEVQNYRNICAARLEPGRELTVICGNNGQGKTNLLEAIWLLTGGKSFRGGKDAEL 60 Query: 61 IRHEQEAFVLHGRLQGEERE-----------TAIGLTKDKQGDSKVRIDGTDGHKVAELA 109 +R + VL Q + E +G + + ++G + A LA Sbjct: 61 VRRGEAFAVLEADTQRDRPEGCEPAEPAHIRMTVGTPEAAKPGRYAAVNGAAPKRAAALA 120 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 P + P +L+ G P+ RR FLD PG+ ++ R+L+Q+NA LR Sbjct: 121 GSFPAVVFDPGHLSLVKGAPEGRRKFLDAALCQLYPGYLASYRRYVRVLQQKNALLRHSA 180 Query: 170 RYEQ---------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFS 219 ++ L + EL E + R EY +A + ++ Sbjct: 181 NGQERPYAEKRTLLEVLNTELAAQGEALQQRRREYLKLLAPRACANYAELSHGAERMSIR 240 Query: 220 FQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 + + AE+L + E + + + G H+ DL + D P S+GQ + ++ Sbjct: 241 YAAQFAPG-GLAELLRQRQEEELRAGQSLCGIHREDLELLLDDQPARVYASQGQQRSVVL 299 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 +L++A+ + +G + L+DD SELD+ R+ L + +K Q FV++ Sbjct: 300 SLKMAEAAAAAQITGEHPVLLLDDVLSELDEGRKQYLLTCMKEK--QTFVTSCDDTDF-- 355 Query: 340 MSDENSKMFTVEKGKI 355 + +++ ++ G + Sbjct: 356 -LKTDGEVYRMDGGVL 370 >UniRef50_D2NQA9 Recombinational DNA repair ATPase n=2 Tax=Rothia mucilaginosa RepID=D2NQA9_9MICC Length = 450 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 78/382 (20%), Positives = 143/382 (37%), Gaps = 31/382 (8%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + D+R L LS G +G+NG GKT+++EAI + R G ++ Sbjct: 39 YIDHISLLDYRTYALLSLPLSAGVTVFLGSNGVGKTNIVEAIDYAASLSSHRVSHDGPLV 98 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + R ++T ++VRI+ + E + L +PE Sbjct: 99 RAGASRAYIRTRTVRGSQQTVTEFEIAPGQSNRVRINRAAPVRAKEALGIARTVLFSPED 158 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-------EQL 174 L+ G P RR F+D P S +R+L+QRN+ L+ + R L Sbjct: 159 LQLVKGDPAGRRRFVDDLASSLRPVVSGYRSEYERILRQRNSLLKSMQRNARDENALSTL 218 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRG---------- 223 WD++L L Q+ + R + + F+++ Sbjct: 219 SVWDEQLSTLGAQLLSARFRLLQRFLPQLRRAYAGLTDGSKEVGFNYESTVFSSMGERSI 278 Query: 224 --------WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLK 275 + + + + T GPH+ D+ + G PV+ S G+ Sbjct: 279 EHAALMRVEDLKEALMRGFAERRRDEIERGVTLVGPHREDITLLLGGMPVKYFASHGESW 338 Query: 276 LLMCALRLAQGEFLTRES---GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 AL+LA + G + ++DD +ELD RR L + + + QV ++ Sbjct: 339 SFALALKLASWFVHVEDDSSVGSSPILILDDVFAELDSARRHRLGAMVADAE-QVLITCA 397 Query: 333 SAEHVIDMSDENSKMFTVEKGK 354 + + + ++ +V G+ Sbjct: 398 VLSDIPEELG-DYRLVSVTAGR 418 >UniRef50_A0Z2Y7 DNA replication and repair protein recF n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z2Y7_9GAMM Length = 376 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 177/357 (49%), Gaps = 3/357 (0%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L + I RN+ L + N + G NGSGK+S++EA+ L GR+FRS + VI Sbjct: 9 RLESVYIDGVRNLSAQRLVMGSEINLISGPNGSGKSSIVEALSMLSTGRSFRSSSVRSVI 68 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 +H ++ ++ +++ ++G+ + K G+ +R+DG +AE A +P +I P Sbjct: 69 QHGRDDCIVQAQVRYRGSVRSLGIRRSKTGELTLRLDGEPMSSLAEFAAQVPTIIIDPSS 128 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 + G P RR +D FH E GF W +R+LKQRNA LR+ Q PW +EL Sbjct: 129 TDTITGPPDSRRRLIDGTLFHVEHGFLDVWRRYQRVLKQRNAMLRRGMMRGQ-DPWLREL 187 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFER 240 + ++ +R + + + F+ GW+ L R+ E Sbjct: 188 SRVGSDLTNYRVGLVSRLGPVFKSILAELNSALADTELVFRFGWDASLSLEAGLARSTES 247 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D +T GPH+ADLR++ G + D SRGQLKL + ALRLAQG L G LYL Sbjct: 248 DIAQGFTHVGPHRADLRLQWQGRSMSDVFSRGQLKLAVIALRLAQGRVLAESGGGAPLYL 307 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS-DENSKMFTVEKGKIT 356 +DD +ELDD + L+ T SQV ++ +S + S +F VE+G ++ Sbjct: 308 VDDLTAELDDHHALQVCRMLEQTSSQVVLTTVSELAQERPWMHDVSSVFHVEQGCVS 364 >UniRef50_UPI000050FBAB recombination protein F n=1 Tax=Brevibacterium linens BL2 RepID=UPI000050FBAB Length = 374 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 86/367 (23%), Positives = 160/367 (43%), Gaps = 25/367 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL +R++R+ DL PG V NG+GKT+++EAI L H R+ R + Sbjct: 1 MWISRLSLRNYRSYPELDLEFEPGVTTFVADNGTGKTNIVEAIGYLAHLRSHRVAFDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + + ++R + ++ +G ++ R++ + K+ E+ L+ + PE Sbjct: 61 VNESAQTATVSALVNRDQRHATVEVSIQSKGANRARVNRSPV-KMKEILGLVSCVVFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------L 174 +L+ G P RR+++D P + + ++ +R LKQRNA L+++ L Sbjct: 120 DLSLVRGEPAERRSWMDTLVVSRNPRYSSVITDFERALKQRNALLKRLREDRDPGLEATL 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS--------------F 220 W+ A ++ R A I + + L Sbjct: 180 DIWNMAYADSASELVYGRQRILADIVEPLQKNFAYIAADARLERQGIQARYDSRIDYSQA 239 Query: 221 QRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 + E LER + + T HGP + DL + P + S G+ L A Sbjct: 240 ESAAECRELLLAALERRRTTEIERGLTLHGPGRDDLALTIGDHPAKGYASHGETWSLALA 299 Query: 281 LRLAQGEFLTRESG---RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 ++LA + L+ ++G + + ++DD +ELD RR LASR+ + QVF++A + Sbjct: 300 MQLAGWDLLSSDAGSAAEQPVLVLDDVFAELDTGRRNRLASRITEAE-QVFITAAVDGDL 358 Query: 338 IDMSDEN 344 + + Sbjct: 359 PEGLEGR 365 >UniRef50_A9WR32 DNA replication and repair protein recF n=8 Tax=Actinomycetales RepID=RECF_RENSM Length = 398 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 157/387 (40%), Gaps = 44/387 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L + DFR+ + ADL L PG N +G+NG GKT+++EA+ L + R Q G + Sbjct: 1 MYLEQLSLTDFRSYQQADLGLEPGVNVFIGSNGLGKTNLVEALGYLASLSSHRVSQDGPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR E ++ G L + + + + ++ RI+ + + E+ L L PE Sbjct: 61 IRFGAEQALIRGNLVRGTQRLGLEVEINASRANRARINRANPVRAREILGLCRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 +L+ G P RR FLD P F ++ +R+LKQRNA L+ Sbjct: 121 DLSLVKGDPGNRRRFLDDLLQSLHPRFAGLRADYERVLKQRNALLKSARGHSRSRQAPSA 180 Query: 171 --YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKE 227 + WD+ A Q+ + R + + +M+ ++ L+ ++ + Sbjct: 181 DFLSTIEVWDQHFANHAAQLLSARLKVLEQLKPEMSRAYQELTDGSKELSARYRSSLDGY 240 Query: 228 TE---------------------------YAEVLERNFERDRQLTYTAHGPHKADLRIRA 260 E Y L +R+ + T GPH+ ++ + Sbjct: 241 QEDSDDAAEIHDDEAASLVSASVESLTEHYLLALAAVRQREIERGLTLIGPHRDEVELGL 300 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFLT---RESGRRCLYLIDDFASELDDERRGLLA 317 AP S G+ + ALRLA L G + ++DD +ELD RR LA Sbjct: 301 GQAPARGYASHGETWSVALALRLASYYVLKADQEIDGADPILVLDDVFAELDSSRRSKLA 360 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDEN 344 + + QV V+A + V Sbjct: 361 HMVAGAE-QVLVTAAVDDDVPAELSGR 386 >UniRef50_D0KVU2 DNA replication and repair protein RecF n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVU2_HALNC Length = 359 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 109/359 (30%), Positives = 173/359 (48%), Gaps = 11/359 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 LT L I FRN+ D LS GFN LVG NG+GKTSVLEAIY L ++FR+ +I Sbjct: 5 HLTSLSITQFRNLTMTDCPLSAGFNLLVGDNGAGKTSVLEAIYYLSTLKSFRTQTHNDLI 64 Query: 62 RH----EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLI 117 ++ V+ + ++ + + L + K ++R+ + + + +P+ + Sbjct: 65 ARYPDRDRGCAVVRAGVHQDDHDFFMALERCKDQ-FRLRLGREEVPRASLFVAHLPVLAL 123 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 + L+ GP++RR F+D F+ F A++ R+LKQRNAALR E W Sbjct: 124 HAQSDDLVLAGPEFRRKFIDRMAFYLFADFVPAYAQFARMLKQRNAALRTGQSTE---IW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 D I E+++ R + + + P+ S+ F G + + +E L RN Sbjct: 181 DPLFIQYGERLNEQRVAALDLLKTVLPQVFEALAPQLSVDMQFHPGHKSGLDLSEALARN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ERDR++ T GP +AD+ + + SRGQ+K+ AL LA + G+R Sbjct: 241 RERDREMGQTLIGPQRADILFTLNDYAFKSFASRGQIKVFTAALTLATAHIWQAQRGKRA 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L DDF SE D L L QVF+SA+ + + D +F ++ G+I+ Sbjct: 301 VLLFDDFMSEFDAHHSSALLHYLSNMGHQVFISAVDRQQIDFPFDA---VFRLDAGQIS 356 >UniRef50_Q2Z017 DNA replication and repair protein recF n=1 Tax=uncultured Chloroflexi bacterium RepID=Q2Z017_9CHLR Length = 409 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 87/404 (21%), Positives = 160/404 (39%), Gaps = 51/404 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + +FRN DL + G LVG N GKTS+LEA+Y L +F + ++ Sbjct: 1 MYLTHLSLTNFRNFTRLDLDVPKGSILLVGDNAQGKTSLLEAVYYLATLVSFHASSDRQL 60 Query: 61 IRHEQEA-----FVLHGRLQGEERETAIGLTKDKQG-------------DSKVRIDGTDG 102 I + + + + ++ +V +DG Sbjct: 61 INFIEARQPLAVARIVADFSRGTNRHHLEIRLIQESNGQTSLNGNSTHVRKEVLLDGVKC 120 Query: 103 HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRN 162 K + L P+ ++ G P+ RR +L+ + A S + L QRN Sbjct: 121 -KASTAVGQFNAVLFLPQMLGVIEGSPEERRRYLNLALAQVIAHYPAALSEYTKALSQRN 179 Query: 163 AALRQVT----RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLT 217 A L+ + QL WD++++ Q+ R + T ++ L Sbjct: 180 ALLKLLNERQGDPAQLDYWDEQIVSNGAQLIYARIHAVQELERLAVRTHRELTRGAEVLR 239 Query: 218 FSFQRGWE--------------------------KETEYAEVLERNFERDRQLTYTAHGP 251 ++Q ++ + +AE L + + T GP Sbjct: 240 LNYQPSYDPFPVQPGQYALPLDSPVDRSGLTLEGIQQGFAENLNKLRPEEIARGVTTIGP 299 Query: 252 HKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDE 311 H+ +LR A+G + SRGQ++ M +L++A+ ++ +SG+ + L+D+ +ELD Sbjct: 300 HRDELRFLANGIDLGTYGSRGQVRTAMLSLKIAEVGWMHHKSGQWPVLLLDEVLAELDAN 359 Query: 312 RRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 RR L RL ++ Q ++ + E + ++V +G++ Sbjct: 360 RRQDLLERLTQSE-QALLTTTDLDLFSSEFVERATRWSVHEGRL 402 >UniRef50_A1SCL9 DNA replication and repair protein recF n=1 Tax=Nocardioides sp. JS614 RepID=RECF_NOCSJ Length = 420 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 90/420 (21%), Positives = 154/420 (36%), Gaps = 69/420 (16%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + DFR+ TA++ LSPG +G NG GKT+++EAI L + R + Sbjct: 1 MYVAHLSLHDFRSYATAEVELSPGVTAFIGRNGQGKTNLVEAIDYLSRLSSHRVASDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + + R + + + ++ R++ + + +L L+ + +PE Sbjct: 61 VRAGADQAVVRAAVVRDGRTAVLEVELNPGRSNRARVNRSPLPRARDLVGLVRTVVFSPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 TL+ G P RR FLD P ++ R+L+QRN L+ + Sbjct: 121 DLTLVKGDPADRRRFLDDLLVLRVPRLAGVRADYDRVLRQRNTLLKTARKGGFARKGGFA 180 Query: 171 -------------------------------------YEQLRPWDKELIPLAEQISTWRA 193 + L WD L ++ R Sbjct: 181 RKGGFAPLGPPEGRPEGPPEGRTGGSATSGPPSRSVALDTLAVWDAHLARTGAELLAERL 240 Query: 194 EYSAGIAADMADTC---KQFLPEFSLTFSFQRGWEKE-----TEYAEVL----ERNFERD 241 + + + ++ ++ E + E L ER + Sbjct: 241 ALVEALRPYVGKAYETVARGATRDDAEIDYKPSFDLEGRTGRDDLVEALLAEVERRRGDE 300 Query: 242 RQLTYTAHGPHKADLRIRADG------APVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + GPH+ +L + PV+ S G+ ALRLA + L G Sbjct: 301 LDRGVSLVGPHRDELLLTLGHGSPDSRLPVKGYASHGESWSFALALRLAAYDLLRA-DGD 359 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + ++DD +ELD ERR LA + + QV V+A A V F V G++ Sbjct: 360 DPILILDDVFAELDTERRAQLADLVAGAE-QVLVTAAVAADVPAGL--AGARFAVGNGEV 416 >UniRef50_C7N0K2 DNA replication and repair protein recF n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N0K2_SLAHD Length = 376 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 141/367 (38%), Gaps = 24/367 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + +RDFRN ET L +G NG GKT+VLEAI L +FR +I Sbjct: 4 RIESFQLRDFRNYETFRLDGIGPLTIFIGPNGIGKTNVLEAIQLLTATPSFRHAHTQELI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + E +L + + R+ IGL G I+G H ++ +P + +P+ Sbjct: 64 RWDAENSLLKAHMVSDVRDLEIGLAIGPTG-KTYSINGKK-HSGQDVQTTLPSVVFSPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 LL G YRR LD + +L+K +NA L+ + + + Sbjct: 122 MLLLKGSQSYRRDELDAVGCQLSKNHRILKRDYLKLMKHKNALLKDGVTGPYIESVNDLI 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW---------------- 224 +P A Q+ +R IAA MA+ L + W Sbjct: 182 VPTATQLYLYRVALFKNIAARMAEVYATISAGGERLEMRYIPSWHPMEVSKDVIEDVPFD 241 Query: 225 ----EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 E T E L + + + GPH + +G S+GQ + + A Sbjct: 242 LGKQEISTRLEEALHQRAVEEYERGRGLVGPHADKIMFYLNGRNASLYGSQGQQRSISLA 301 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 ++A+ + G++ + L+DD ASELD RRG L L Q F++ Sbjct: 302 WKIAEVGLIEEILGQKPVLLLDDVASELDAARRGALVELL-HRDIQTFITTTDIGTFESE 360 Query: 341 SDENSKM 347 + + + Sbjct: 361 VVDEASV 367 >UniRef50_A0ZZA1 DNA replication and repair protein recF n=5 Tax=Bifidobacteriaceae RepID=RECF_BIFAA Length = 403 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 75/360 (20%), Positives = 151/360 (41%), Gaps = 22/360 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + L PG N L G+NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWDHCVLDFEPGINILQGSNGLGKTNIVEAVEVLSTGSSHRTSSSLPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + ++ + +T +G ++ R+DG + ++ +P TPE Sbjct: 61 VEKGHPSATVRANVEDAGEQRTYEITIAARGANRARVDGGKSQYMRDIVGWVPSVSFTPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---------- 170 L++G P RR FL+ P + + + KQR A L+Q++ Sbjct: 121 DQRLVSGDPATRRNFLNQAASLLLPRYAQSLQQFTHVAKQRAALLKQLSDGSGIDPEYGR 180 Query: 171 ---YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK 226 L W + I L Q++ R + + E ++ +++ Sbjct: 181 QAVLSGLEVWTGQFIALGVQLTKDRNDVIGLLREPFTRIYASLAGEEEQADLVYEPSFDE 240 Query: 227 ETEYAE-------VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMC 279 + E +R + + GP + DL +R + P + S G++ + Sbjct: 241 VLLFDEPAAEISRHFQRIYPGEVARGQNLIGPQRDDLTLRLNDMPAREFASNGEMWTMAL 300 Query: 280 ALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 AL++A E ++ + + + ++DD ++LD+ RRG + Q QV ++ +A + Sbjct: 301 ALKMALYEVVSAQRDVKPIVILDDVFAQLDESRRGQILDF-ARRQDQVLITVAAASDIPQ 359 >UniRef50_Q6MRR9 DNA replication and repair protein recF n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MRR9_BDEBA Length = 374 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 150/376 (39%), Gaps = 21/376 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M RL + +FRN L+ SP N +G NG GKT++LEA+Y + G +FR + Sbjct: 1 MIFERLRLVNFRNYRDVVLSFSPRVNVFLGENGQGKTNLLEAMYMISQGDSFRYSDNSTL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I V+ + + + L K + ++ + A++ + + +PE Sbjct: 61 INTNTSESVIQALITQNDLHYKLKLGLSKS-RKVLTLNDKRVNS-ADIRKIFASVVFSPE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ--------VTRYE 172 + + G +RR +D + ++ ++ LK RN L+ V Sbjct: 119 SLSSIKEGADHRRELVDELLVTFDRKNAQLIADYRKALKTRNKILKNFLEGLQDKVVTQN 178 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--------- 223 L + + + LA ++ R G++ D + + S+ S + Sbjct: 179 LLESLNPQFVRLATDLTHARITALHGLSKDFNNAMQYISGNSSVDISVEYLVSDQNAVSF 238 Query: 224 --WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 E E + L + + + GPHK D+ S+GQ + ++ + Sbjct: 239 TREEVENAITKRLRELHDAELSSGTSLVGPHKHDIVFLYGQKDSRFFCSQGQQRAIILSF 298 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 ++AQ + + G + ++DD SELD +R L + L +Q+FV+ S Sbjct: 299 KMAQIVYHRKAHGTYPVLMLDDVLSELDKAKRDALITFLHEINTQIFVTTTDFTLPESFS 358 Query: 342 DENSKMFTVEKGKITD 357 + ++ ++ G+I + Sbjct: 359 LDQLRVVRIKDGQILE 374 >UniRef50_A4A954 DNA replication and repair protein recF n=1 Tax=Congregibacter litoralis KT71 RepID=A4A954_9GAMM Length = 352 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 122/336 (36%), Positives = 183/336 (54%), Gaps = 7/336 (2%) Query: 26 NFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGE-ERETAIG 84 N + G NGSGKTS+LEA + LG R+FRS +I H +E++V+ G + AIG Sbjct: 5 NVIYGVNGSGKTSLLEAAHILGTARSFRSGGAKSLISHGEESYVVRGERRSPTGGSMAIG 64 Query: 85 LTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNE 144 + ++K G +R+ G V+ LA +P+ LI + F LL G P RR FLDWG FH E Sbjct: 65 VQREKAGAISLRLAGEPSRSVSRLADELPLLLINSDSFDLLVGEPANRRRFLDWGVFHVE 124 Query: 145 PGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADM 203 + +R L QRN LR+ +L+ W ++L AE++S+ R + + Sbjct: 125 HELRDSRQRFQRALTQRNHLLRRAKLDPSELQVWTRDLAVHAERVSSGRERFLESLREVF 184 Query: 204 ADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADG 262 + PE + ++RGW+ + Y EVL+R+ D++ +T GP +AD+R+ G Sbjct: 185 EPLIAELAPEIGPVALVYRRGWDASSSYEEVLQRSLTSDQEQGFTQTGPQRADIRVTVGG 244 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKA 322 +TLSRGQ KLL+CAL+LAQG+ L E G LYLIDD SELD ER + L A Sbjct: 245 YSAAETLSRGQQKLLVCALKLAQGQILASEQG-NVLYLIDDLPSELDAERCERVCRTLAA 303 Query: 323 TQSQVFVSAISAEHVIDMS---DENSKMFTVEKGKI 355 Q Q ++ ++ + + + MF V++G++ Sbjct: 304 MQVQTLITCVTRSAIPASWLGSESDVAMFHVKQGQV 339 >UniRef50_UPI0001746B3D recombination protein F n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001746B3D Length = 356 Score = 271 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 141/360 (39%), Gaps = 10/360 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +RDFR A LAL P LVG NG GKTS+LEA L ++ R+ + Sbjct: 1 MLLEWMQVRDFRCFTEARLALHPETTLLVGKNGQGKTSLLEAACVLMRLQSPRTSTRSDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAE-LAHLMPMQLITP 119 IR + V G + R+ + +V ++ + + + L + + Sbjct: 61 IRFGAQTCVTEGVV--GGRKLRVA---QSPTARRVAVNDSVCPRAGDYLIQSARVVWMDH 115 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--RYEQLRPW 177 L GG ++RR +LD+ P + A + +R L+ RN L++ + Q+ + Sbjct: 116 SDMNLARGGAEHRRRYLDFAAAQLFPEYLNALKSYERALRSRNFLLKRDAVISWRQVDAY 175 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 + L I R E + + + + L Sbjct: 176 GRILAEHGAAIRRCRDELVQRVQEPVTEAHLGLSAGVEPGAVAYVPGYPGEDLEAALMEV 235 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 + + +L T G H+ DL + G P S GQ + L AL+LAQ L G Sbjct: 236 RDSEARLRTTQVGVHRDDLALTIHGRPAGAFASEGQQRTLCLALKLAQARVLEEAQGEPP 295 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 L LIDD ELD RR L + L Q ++ + + ++ V+ G++ + Sbjct: 296 LLLIDDIFGELDKTRRQALLAYL-PAHGQKIITTTFTDWASET-GVGGMVYEVQDGRLKE 353 >UniRef50_B5JFD9 DNA replication and repair protein recF n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFD9_9BACT Length = 358 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 158/356 (44%), Gaps = 6/356 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + ++RNI+ A L L FL+G NG GKT++LEAI + RAFR+ + + Sbjct: 1 MKFKAIGVSNYRNIKLARLNLDADRVFLLGRNGQGKTNLLEAIGYVTSLRAFRARENEIL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + E + ++ EE E + K+ +V +DG + ++ P ++ E Sbjct: 61 LGPESGQAEIVYEIEHEEFEDSEARVLIKRKGKEVSLDGEAVRRASDFVGRFPAVTLSSE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR F+D + ++ A ++ +++RNA L++ + E +RP++ E Sbjct: 121 DLNIVRGSPGGRRRFIDTFLCGIDREYYVALQRYQKCVQERNALLKRGSSMELMRPFEAE 180 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGW--EKETEYAEVLERN 237 LI A + R + + + + + + ++ + E Y +L+RN Sbjct: 181 LIGPALAVIRKRDSVISELGSMASRFYETLSGSAEAIGVDYKPNAYPDDEDAYRAMLDRN 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 +RD + T+ GPH+ D + +G D S GQ + + +L A + G Sbjct: 241 RKRDEIMHSTSKGPHRDDFELTLNGRSATDFASDGQQRSIALSLAFATIAYWRERFGVCP 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 LIDD ELD RR + L + Q+ + S + ++ VE G Sbjct: 301 ALLIDDVLGELDPVRRERFWNALDES-IQLIATGTELPD--AASGKEWLVYRVEDG 353 >UniRef50_C7MLD4 DNA replication and repair protein recF n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLD4_CRYCD Length = 378 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 89/360 (24%), Positives = 156/360 (43%), Gaps = 17/360 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 LT L++R+FRN + L G L G N +GKTSV+EAI + ++FR+ QIGR I Sbjct: 12 RLTNLVLRNFRNHQEFSLKGLQGITILAGPNATGKTSVVEAIQLISALKSFRASQIGRAI 71 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R Q A + ++ + R+ + L + +G R++G + +L L P P+ Sbjct: 72 RWGQTAASVIATIESDHRQLDLQLRIE-EGKRSYRLNGK-ARRARDLRGLFPAVTFVPDD 129 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L G RR LD F S+ +L++Q+N ALR + D+ L Sbjct: 130 LGLAKGPSSARRGALDDLGAQISKNFAMVQSDYTKLVRQKNQALRDEASDTVIDSIDEVL 189 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE----------- 229 + QI + R+ + ++ + + W +E + Sbjct: 190 TLVGVQILSHRSVMIKRLLPYFQLYYERIAQANETADIQYIPCWNEENQTQWTFEREECL 249 Query: 230 --YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 + L++ ++R + GPH + +G S+GQ + L+ A +LA+ Sbjct: 250 AIFTSTLQQARLQERLRRKSVVGPHADKVVFLINGHDAAHFASQGQQRSLVLAYKLAEAA 309 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 + +R + L+DD SELD +RR S ++ Q+F++ + E+ D E + + Sbjct: 310 VIEETLNQRPILLLDDVMSELDHQRRDQFMSMIEE-DIQIFITTTNLEYFTDEIKEKALI 368 >UniRef50_B0S419 DNA replication and repair protein recF n=2 Tax=Finegoldia magna RepID=B0S419_FINM2 Length = 355 Score = 269 bits (689), Expect = 9e-71, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 144/348 (41%), Gaps = 15/348 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L + ++RN +L G N +VG N SGKT++LEAI G++F++ + Sbjct: 1 MIVQKLKLYNYRNFCEIELDFCDGLNLIVGRNASGKTNILEAINVALKGKSFKTNTNSHL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ ++ + + + E I +T K + + ++ + + E + P+ Sbjct: 61 IKFGEDEARIVMDVYDDGFEDKIDITI-KSNEKILNVNEAFVNTIKEYNEYFECIVFKPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLRP 176 ++ RR FLD + + T ++L +RN ++ EQL+ Sbjct: 120 DLKIIKESKSLRRKFLDESISGVDNYYRTVLKQYNQVLDERNKLIKNHRYNSYFNEQLKA 179 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-------EFSLTFSF-QRGWEKET 228 + +L I R Y + + CK E + + + +++ Sbjct: 180 LNIQLSDFGSYIMHKRKSYVERLHLIAKNVCKNLSDENDDLYMENKFSIRYVEDMTDQKN 239 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 Y + L E+D + T G H+ DL I + + S+ Q++ + +++LAQ + Sbjct: 240 TYYKSLRDILEKDLENKQTNLGIHRDDLDILINDKQAKFFASQAQVRTAILSMKLAQLDL 299 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + R + L+DD SELDD R + +K Q F++ Sbjct: 300 SRFYNDRMPIILLDDVFSELDDYRINYIIRYIKDF--QAFLTTSERAP 345 >UniRef50_B0B9I2 DNA replication and repair protein recF n=7 Tax=Chlamydia trachomatis RepID=RECF_CHLT2 Length = 365 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 94/365 (25%), Positives = 158/365 (43%), Gaps = 16/365 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L ++DFRN L L P N + G N GKT++LEA+Y L GR+FR+ ++ Sbjct: 1 MRVLSLFLKDFRNYTDLRLELGPEMNSIFGLNAQGKTNLLEALYILSLGRSFRTSRLTDA 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR F + +E + + DK+G + DG K++EL L P+ L + + Sbjct: 61 IRFGASHFFIEAVFSHKEVFHTLSIQVDKKGKKILF-DGAPITKLSELVGLFPVILFSIK 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++ G P RR FLD + S + L QRNA+++ + + W+ Sbjct: 120 DIAIIEGSPSERRRFLDLLLAQASDKYTEHISLYHKALDQRNASIKAQNQKA-ISAWNSP 178 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW---------EKETEYA 231 LI ++ R E + + L + +L+ ++ + + Y Sbjct: 179 LIAYGSLVAFLRNECTKKLNTIFQTLWDNTL-KETLSLRYESSLITEESPTLNDIASNYY 237 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L +D L YT GPH+ +L + + PV S GQ L+ LR A+ +L Sbjct: 238 EQLRIANTKDLDLGYTMVGPHRDELLLTINDLPVAKFSSEGQKHSLLAVLRFAECVYLQE 297 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 E L +DD + L D++R +L + QV ++ D S +F V Sbjct: 298 EFCIHPLLCMDDIHACL-DQQRLDQLLQLSNSLGQVVTTST---ICPDHRSTTSCIFHVT 353 Query: 352 KGKIT 356 + +++ Sbjct: 354 QAQVS 358 >UniRef50_D2RMT5 DNA replication and repair protein RecF n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RMT5_ACIFE Length = 378 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 97/380 (25%), Positives = 154/380 (40%), Gaps = 27/380 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + FRN E + L G N GKT++LE I+T G +FR+ + Sbjct: 1 MRLENLRLLHFRNYEQVSIPLGHNITIFYGDNAQGKTNLLEGIHTAARGFSFRTRHEEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDK---QGDSKVRIDGTDGHKVAELAHLMPMQLI 117 E + + + + + + + + + ++G E L+ + L Sbjct: 61 PSFGAEEWAAELQYRDRYGSSRLLVKRYPVRGRMKKENLLNGNPV-TPREQYGLVNLVLF 119 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE----- 172 TP+ L+ G P RR FLD P ++ + R+L+QRN L+Q E Sbjct: 120 TPDDLQLVKGDPALRRKFLDMEIAQVSPVYYDLLAQYNRVLQQRNRFLKQCRDREKLEEA 179 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETE-- 229 QL WD L LA I R + +GI + +LT S+ + E Sbjct: 180 QLLVWDGALAQLAAGILDHRLQALSGILQAARQVYDGITGTQEALTLSYVQKRGDGEETV 239 Query: 230 ------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 Y E L D YT+ GPH+ DL I +G P+ S+GQ + Sbjct: 240 RENPGPGAWEGFYREQLRLRHRLDYLRGYTSLGPHRDDLEIFHEGRPLRAYGSQGQQRTA 299 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV 337 AL+L++ EF+ + L+DD SELD RR L + T Q F++ Sbjct: 300 ALALKLSELEFIRSVREEYPVLLLDDVLSELDQHRREKLLGFINGT-VQTFLTVNDRH-- 356 Query: 338 IDMSDENSKMFTVEKGKITD 357 + D + + V +G++ + Sbjct: 357 LAPVDGDVAAYRVREGRLEE 376 >UniRef50_D0WHH5 DNA replication and repair protein recF n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHH5_9ACTN Length = 379 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 139/372 (37%), Gaps = 24/372 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + +R+FRN + ++ +G N +GK++VLEAI + FR + +I Sbjct: 4 HIQSFSLRNFRNYRSFEMDDVDPLTMFIGPNATGKSNVLEAIQLVTSATTFRGAKSREMI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 R + + + + R+ + + S + ++G H ++ ++P + +PE Sbjct: 64 RWGCDCADVKAHIVSDTRDLETSMRLTESSRS-IAVNGKRKHGQ-DVLGILPSVMFSPED 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L+ G +RR LD + +++K +N+ ++ L + L Sbjct: 122 MQLVTGAHGFRRDALDALGSQLSRTHRVLRRDYLKIVKHKNSLMKNGIEGSLLDSVNDML 181 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEKETEYAEV------- 233 + + +RA +A +A + +L + WE Y++ Sbjct: 182 VTSGAHLYVYRAALFDNLAVRIARAYSEISSSGETLDMRYVPSWEDADLYSDRMRDAAHF 241 Query: 234 -------------LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 L + + + GPH L DG S+GQ + + + Sbjct: 242 FEVEECSNRMRRSLFNRHDEESRRGRALVGPHADKLFFYLDGRNATLYGSQGQRRSIALS 301 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 ++A+ + G + + L+DD ASELD+ RR L L Q F++ Sbjct: 302 WKIAEIGLIEDVLGLKPILLLDDVASELDESRREALIGLLHH-DIQTFITTTDMGAFEKS 360 Query: 341 SDENSKMFTVEK 352 +++ + Sbjct: 361 IANGARVVDMHS 372 >UniRef50_B3QQY5 DNA replication and repair protein recF n=2 Tax=Chlorobaculum RepID=RECF_CHLP8 Length = 368 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 138/347 (39%), Gaps = 16/347 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + I +FRN + + G NGSGKTS+LEAI+ R F Sbjct: 1 MRLDSISIANFRNHTLLEFEPGHSVTNIYGRNGSGKTSILEAIHYCALTRGFSGNNDREY 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 ++ +E F + + T + + + + ++ ++ + + +P TP Sbjct: 61 LKFGEELFTIRSSFTSGQGIATKVSVAYSPKREKRILVNEQELQTFSSHIGTIPCVTFTP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR----YEQLR 175 ++NG P RR F+D + + + +R+L+QRNA L L Sbjct: 121 REMVIINGAPAERRRFIDTAICQYDRKYLSDLLLYRRILQQRNALLSSEQDPRFIDSALD 180 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW----------E 225 +L+ A +I R + + + D + + +Q + Sbjct: 181 VLTDQLVATATEIVLVRKRFIEHFTSMLGDVYQWIPEGAEPSILYQSSLGHHENLYEKDK 240 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 + + E E +++ Q T GPH+ DL+ + + S+GQ + + A+++ Sbjct: 241 IQQVFRERFETLKQQELQRRQTLAGPHRDDLQFYLNKREIRKYASQGQQRAFLVAMKMTL 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 +L SG + L+DD SELD+ G + L QV +++ Sbjct: 301 QGYLYEASGEIPITLLDDLFSELDEVVSGTMVETLATKG-QVIITST 346 >UniRef50_B7GSG2 DNA replication and repair protein recF n=9 Tax=Bifidobacterium RepID=RECF_BIFLI Length = 412 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 77/364 (21%), Positives = 148/364 (40%), Gaps = 21/364 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++RL + +R+ + PG N L G NG GKT+++EA+ L G + R+ + Sbjct: 1 MHISRLALDHYRSWSQVVVDFVPGVNILFGKNGLGKTNLVEAVEVLSTGSSHRTSSTLPL 60 Query: 61 IRHEQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I Q + + + + T + +G ++ RI+ + ++ +P TP Sbjct: 61 IERGQTTATIRANVADDAGQTTTYEASIHARGANRARINSGSSLYLRDIIGKIPSVSFTP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ------ 173 E L++G P RR ++ EPG+ R+ KQR L+Q+ Sbjct: 121 EDQRLVSGDPGARRTMMNQAAALLEPGYMQTLQQFTRIAKQRATLLKQLNANANNGQPMD 180 Query: 174 -----LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWEK- 226 L W + I ++ RA + +A A +T ++ +++ Sbjct: 181 AVLSGLEIWTGQFIEAGVVLTRMRAHVISLLAEPFAAIYADLAGAGEQVTLTYAPSFDEV 240 Query: 227 ------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCA 280 + +E +R + + GP + D+ + G P + S G++ + A Sbjct: 241 LMFNDPHPQISEHFQRIYPGEVARGVNLIGPQRDDMNLDLAGIPAREFASNGEMWTMALA 300 Query: 281 LRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDM 340 L++A E + G + + ++DD ++LDD RR + Q QV ++ + V D Sbjct: 301 LKMALFEIVRDRLGLQPIVILDDVFAQLDDSRRAQILDF-ARKQDQVLITVAAEGDVPDY 359 Query: 341 SDEN 344 + Sbjct: 360 ESAH 363 >UniRef50_D0GPF3 DNA replication and repair protein recF n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GPF3_9FUSO Length = 364 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 167/366 (45%), Gaps = 18/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L +L +FR +E L FN + G NG GKTS +EA++ L G++FR+ + + Sbjct: 1 MYLKQLSYSNFRCLEDTKTELDRNFNLIYGKNGQGKTSFIEAVHFLATGKSFRTKKTKEL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R+ + ++ G+ + E I + I+ +K + L+ + PE Sbjct: 61 FRYNKNRVIVFGKYINKNEEENILAIDVNEEKKDFYINRNK-NKYIDYVGLLNIISFIPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRP-WDK 179 ++ G P RR F ++ + + + + +++LK RN +++ E++ +++ Sbjct: 120 DIEIIVGNPSIRRNFFNYEISQAKKDYLKSIVDFEKILKTRNKLIKEKKTREEIYSIYNE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQ---------RGWEKETE 229 + + I R E+ I+ + ++ P+ L + E + + Sbjct: 180 KFMEEGTNIIIHRREFIKNISILLNLNYRKLFDPKSELKLKYDCFLGDIDKKTKEEIKEK 239 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 ++E ++R ER++ L Y+ GP K D +G + S+G+ K ++ +L++++ + L Sbjct: 240 FSENIKRKAEREKILGYSLTGPQKDDFIFELNGKNAKSFSSQGEKKSIIFSLKVSEIDML 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E L+++DD AS D+ R+ + + Q F+++ + K F Sbjct: 300 VKEKNEYPLFIMDDIASYFDEVRKKSILDYFINKKIQCFITSTED------LNIKGKKFI 353 Query: 350 VEKGKI 355 +EKGK+ Sbjct: 354 IEKGKV 359 >UniRef50_C7R4Q9 DNA replication and repair protein recF n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R4Q9_JONDD Length = 415 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 95/400 (23%), Positives = 165/400 (41%), Gaps = 46/400 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + D+R+ E D+ +PG N LVG NG GKT+++EAI L + R + Sbjct: 1 MYVSHLSLVDYRSYEHVDIEFAPGVNVLVGHNGQGKTNIVEAIGYLATLASHRVAHDTAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + ++ R+ +R + L +K R++ + + + ++ + PE Sbjct: 61 IRVGAQRALIRSRVVRGDRAQVVELELLHGKANKARVNRGQPGRASTVLGIVKTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-------YEQ 173 L+ G P RR +LD P + ++ ++++QR+A L+Q+ R Sbjct: 121 DLVLVKGDPDARRRYLDDLTVLMIPRMRSVLADYDKVVRQRSALLKQLMRGGASHASDAT 180 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSFQRGWEKETE--- 229 L WD+ ++ L QI R A +A +A + + ++ E + Sbjct: 181 LAVWDERMVALGSQIIGVRQRLVAALAPHLASGYETVSSGQSEAKMRYRPSLESFLDEPM 240 Query: 230 ------------YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 YAEVL R R+ + GPH+ D+ + PV+ S G+ Sbjct: 241 PAVMSVEEISVIYAEVLARARRRELERGVCIVGPHRDDVEQTLNNLPVKGYASHGESWSY 300 Query: 278 MCALRLAQGEFLTR--------------------ESGRRCLYLIDDFASELDDERRGLLA 317 A+RLA +T + + ++DD +ELD RR LA Sbjct: 301 ALAMRLASYRLMTEGPDENDPASADLQDMWWTDSQEDTEPILILDDVFAELDVRRRRQLA 360 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 + QV ++A A+ V D + +V G +TD Sbjct: 361 DIAAQAR-QVIITAAVAQDVPDQL--RGRTLSVTLGAVTD 397 >UniRef50_A5KS07 DNA replication and repair protein recF n=4 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KS07_9BACT Length = 351 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 158/352 (44%), Gaps = 11/352 (3%) Query: 5 RLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHE 64 L ++ FR+ + + LSP + G NGSGKT++LEA+Y L G +FR+ + + Sbjct: 4 SLRLQQFRSYKDKSVTLSPAVTIISGPNGSGKTNLLEALYVLARGTSFRAS-DQELGQIG 62 Query: 65 QEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTL 124 + + L RL E + + + G +DG ++ H +P+ L P L Sbjct: 63 MDWWRLDARLVANESRSILFEAEKTTGRKTFILDGVKKQRLT-YQHKLPVVLFEPGDLRL 121 Query: 125 LNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPWDKELIP 183 L+G P RR F+D EP + S R+LKQRN L+ + ++L WD L Sbjct: 122 LHGSPARRRLFIDTLISQLEPLYGPLLSKYDRVLKQRNNLLKHLHSSKDELFVWDVALSE 181 Query: 184 LAEQISTWRAEYSAGIAADMADTCKQFL---PEFSLTFSFQRGWEK-ETEYAEVLERNFE 239 +I R +YSA + A + + + SL +SFQ G E + L + Sbjct: 182 YGARIVAERQKYSALLNASLRERYRAIAHTKDIVSLAYSFQEGAESVQQAMVSALHAHHV 241 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+ L YT GPH+ DL + SRG+ + ++ AL+ + E L + L Sbjct: 242 RDKALGYTTVGPHRHDLIFSMNDVEATSIASRGETRSIVLALKFIEVEMLRVYRDQPPLL 301 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 L+DD SELD RR L + +Q ++ +A+ K V+ Sbjct: 302 LLDDVFSELDSTRRMALVEV--GSSTQTVITTTNADIQKTFGGAPVK--HVK 349 >UniRef50_C8W8K6 DNA replication and repair protein recF n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W8K6_ATOPD Length = 363 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 70/359 (19%), Positives = 144/359 (40%), Gaps = 14/359 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FR + ++ LS VG N +GKT+ +EA+ L G +FR +++ Sbjct: 4 KVEHVSLYNFRCFASKEIDLSAQTTIFVGKNAAGKTNTVEALQLLTAGYSFRKPTPSQLL 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + L G+ R+ ++ + +G A+++ + L P+ Sbjct: 64 LTDTSEAKIEISLTGDGRKLENTCIITER-RRQFSKNGKKCQ-AADISGTLMSILFNPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL-RPWDKE 180 +++ GG YRR D +F +S + ++QRN L+ E L WD Sbjct: 122 LSMIKGGASYRREEFDDFGRQANKSYFKVFSTYIKTVEQRNKLLKSDWPDENLLDAWDLS 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG----------WEKETEY 230 L + R +A + ++ L ++ E ++ Sbjct: 182 LARGGAILLHARIHLFERLAKKTCEIYQELSGGEHLEMNYISSIGEISLEASREEISDQF 241 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 + L D + + GPH+ D+ +G + S+GQ++ ++ AL++A+ Sbjct: 242 LQALNEIRIDDIRRQQSTKGPHRDDVEFLIEGKEARNFGSQGQIRTVVLALKMAEVLLSE 301 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 G + L L+DD SELD++RR + Q ++ + + + E +++ Sbjct: 302 EILGEKPLLLLDDVMSELDEDRRKAIMEFAFH-DIQTVITTTNLGYFSEEILEKAQIVR 359 >UniRef50_D2MMX6 Putative recombination protein F n=1 Tax=Bulleidia extructa W1219 RepID=D2MMX6_9FIRM Length = 359 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 93/361 (25%), Positives = 167/361 (46%), Gaps = 10/361 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +RN ++ P N +VG N GKT+++EA+Y L R+FR+ Q + Sbjct: 1 MYIKSLELSHYRNYHHLQVSFQPYLNVIVGKNAQGKTNLIEALYYLSLCRSFRTNQDQAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I+ E++ L +++ ++E+ + G S + I + K +E + + L +PE Sbjct: 61 IQKEEKYANLACQIEERKQESYLRCILHGNGKS-LFIGKINISKTSEFIGRLNVVLFSPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 L + PK RR F+D + + + LLK+RN LR+ E L D+ Sbjct: 120 DIYLFSQAPKARRKFMDQELMKLSKKYLFHLTRYQILLKERNMLLRKTKIDETMLDILDQ 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGWE----KETEYAEVL 234 +++ +I R + I + + +L ++G E ++ E E Sbjct: 180 QMVESEVEILKRRISFLQFINQKIESLFQSISGMPLNLKIEIKQGIEVKKIEKKELVEAH 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +RD + T G H+ D++ DG + + S+GQ +L+M A +L ++ S Sbjct: 240 LSSRKRDIETRITNVGIHRGDIQFLLDGKDILLSASQGQKRLVMIAFKLTILRYIEFISK 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 R+ + L+DD SELD ER+ L +K Q F++A + + N ++E GK Sbjct: 300 RKAIVLLDDVLSELDLERQKRLIHAVKN-DYQCFITATHLPDSLKLEQTNC--ISIEDGK 356 Query: 355 I 355 I Sbjct: 357 I 357 >UniRef50_A4ECR8 DNA replication and repair protein recF n=3 Tax=Collinsella RepID=A4ECR8_9ACTN Length = 368 Score = 267 bits (682), Expect = 6e-70, Method: Composition-based stats. Identities = 79/365 (21%), Positives = 142/365 (38%), Gaps = 18/365 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L + +R+ ++ LAL G L G N +GKT+++EA+ L G +FR + Sbjct: 3 MFARDLSVAHYRSFDSYRLALDEGVTILAGPNAAGKTNLIEALQLLTSGASFRHPTAAEL 62 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 + + + RL+G+ R +GL+ + G +G A + ++P L P+ Sbjct: 63 VHDGVGSCKVELRLEGDGRVLDMGLSAE-DGKRSFSRNGKRC-SAAGVRGVLPSVLFCPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPWDK 179 ++ G RRA LD + S R + QRNA L++ E L W+ Sbjct: 121 HLDMVKRGASVRRAALDDFGMQLSARYADLASTYGRCVTQRNALLKEAWCCREMLGAWND 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK------------- 226 + + R +A + Q + S+ Sbjct: 181 SIARAGAALLVHRLALLDRLAGHVRTAYGQVASGEAANVSYASTLGDLPQVDDREELKGW 240 Query: 227 -ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 L+ + + + + T GPH+ ++ G S+GQ + L+ A ++A+ Sbjct: 241 AYERMLAALDEHADEEIRRGVTLVGPHRDEIEFAVAGRSARSFASQGQQRTLVLAWKVAE 300 Query: 286 GEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 G L L+DD SELD ERRG + Q ++ + + D + + Sbjct: 301 VAVARDVLGTAPLLLLDDVMSELDGERRGAFLRLIGD-DIQTVITTTNLGYFTDDLLDRA 359 Query: 346 KMFTV 350 K+ ++ Sbjct: 360 KVVSM 364 >UniRef50_A6DUF2 DNA replication and repair protein recF n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DUF2_9BACT Length = 364 Score = 266 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 156/363 (42%), Gaps = 12/363 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 ++R+ +++FRN +L L PG + G NG GKT+ LEA+ L R+ RS + Sbjct: 3 FISRIQLKNFRNYPELELKLEPGISVFRGLNGQGKTAFLEALGFLSLLRSIRSSHTRHLK 62 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + E + F L L R + ++ ++ +DG ++ ++ PE Sbjct: 63 KWESDFFSLRACLDRVTRP-ELDMSVYYGDKRQLSLDGNRVPTTSDFIGVVKSVAFMPED 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 ++ G +RR +LD PG+ + + ++ LK RN L++ + +L WD Sbjct: 122 IEIVKGSASWRRQYLDILLSQLSPGYLQSLKHYQKALKSRNQVLKRGLNLDLELDVWDDI 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQ-FLPEFSLTFSFQRGWEKETE-----YAEVL 234 LI ++ R +A ++ ++ +F L ++ K Y E L Sbjct: 182 LIEHGCEVLEARLSLLPRLAESVSTLVEKMLKKDFLLELQYKNSLAKNATDLRSVYIERL 241 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 N ERD+ T GPH+ DL I +G + + S GQ +L L+ A E L Sbjct: 242 LENRERDKLYKMTHQGPHRDDLLINLNGRSLSNYGSEGQCRLSSLILKAAAVELLLPVEK 301 Query: 295 RRC-LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 C + LIDD ELD+ R + + QVF++ + D K + V+ G Sbjct: 302 PDCLILLIDDVLGELDEFSRRAFLKCV-SRGDQVFIACTDIPA--GLEDYEYKSYEVKAG 358 Query: 354 KIT 356 I+ Sbjct: 359 VIS 361 >UniRef50_B6WBH2 Putative uncharacterized protein n=1 Tax=Anaerococcus hydrogenalis DSM 7454 RepID=B6WBH2_9FIRM Length = 357 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 161/361 (44%), Gaps = 11/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + FRN + ++ + N +G N GKT++LE+IY L + ++F+S + + Sbjct: 1 MWIQSLRLSKFRNYLSQNIEFNENINIFLGDNAQGKTNLLESIYYLANAKSFKSFRDKDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++ L G ++ E + + ++ ++ ++ K +L L + L TPE Sbjct: 61 IMFNEKEMALDGLIRKNESFKNVKIRVNEN-KKEIFVNDIKYDKNKDLKSLFKLVLFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 T++ GP +RR +D + + ++L QRN L+ E+L + Sbjct: 120 DLTIIKDGPNFRRNLIDDIIISVNFSYKALKKDFDKVLSQRNKVLKNQRSKYFKEELMAF 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGW--EKETEYAEVL 234 D+++I L +I +R +Y + I + L+ ++ + EY E Sbjct: 180 DQQIIRLNYKIYRYREKYISLINNYAKKNHSNLTENKEDLSIIYRPDIVAKDIEEYREKF 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 +N D + T G + ++ I +G + S+GQ + + ++LA + S Sbjct: 240 SKNKSYDLKYYRTTAGIQRDEIDIIINGKDSKKFGSQGQQRSAILNIKLANVNLIENTSQ 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + + L DD SELD++R L L Q ++A + + + + + SK+ ++ G Sbjct: 300 DKAIILFDDVFSELDEKRSNFLLENLGRF--QTIITATNTKSLDRV--DKSKIRKIKDGH 355 Query: 355 I 355 I Sbjct: 356 I 356 >UniRef50_A5EWH9 DNA replication and repair protein recF n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EWH9_DICNV Length = 356 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 200/356 (56%), Gaps = 5/356 (1%) Query: 1 MSLTRLLIRDFRNIETAD-LALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M + L + FR++++A LA P N + G GSGKT++LEA+Y LG G++FR+ Q+ Sbjct: 1 MRIDSLQTQHFRHLKSAAALAFHPKLNIISGKTGSGKTALLEALYCLGRGKSFRTAQVRH 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +I ++Q F L L ++ +G+ + +G +VR+DG + ++ LA L+P+ ++ Sbjct: 61 MIAYQQSYFRLIAELSDQDGNYFLGMERRARGY-RVRLDGQTLNGLSALAALLPVHIVYA 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + F+LL P+ RR FLD+G F ++ F W + LK RN AL + + +R W Sbjct: 120 DHFSLLTAAPQERRRFLDYGLFFDDAAFLPLWQRYQYALKGRNRALMEGWQDHYIRSWHP 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 L AE+I R +Y + + +L + RGW + + L+ N Sbjct: 180 LLAETAEKIDILRRDYLKRLENRLNQYHAHLGGLQTLRIRYDRGWH--GDLRQTLDENLA 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 RD+Q+ YT G H+AD R+ + + T SRGQ K ++CAL L+Q + + S + + Sbjct: 238 RDQQIKYTRDGIHRADWRLFCEDYDIAHTFSRGQQKTVLCALILSQADEIRARSKKVPVI 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L+DD +ELD ER+ LL L+A+++Q+F++A+ A+ ++ +SD + + F +++G I Sbjct: 298 LVDDITAELDIERQQLLLRFLQASEAQLFITALEAK-LLAISDSDCEQFYLDRGHI 352 >UniRef50_B0KVC4 DNA replication and repair protein recF n=1 Tax=uncultured candidate division WWE3 bacterium EJ0ADIGA11YD11 RepID=B0KVC4_9BACT Length = 352 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 153/355 (43%), Gaps = 18/355 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + + RN L + G NGSGK+++LEAI+ L G++ S + Sbjct: 1 MKILNLKLTNLRNHTKLSLIFDNNVTLITGDNGSGKSTILEAIHILSVGKSKISKYDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGD------SKVRIDGTDGHKVAELAHLMPM 114 I++ ++ ++ ++ ++ + L K D K RI+ + A + Sbjct: 61 IQYGKKFCSINADIETKDDRFNMELQIIKNEDFENASIKKARINKV-AKSIQYFAGIFNS 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---- 170 L +P+ L+ G P RR ++D + + + ++ + ++QRN L ++ + Sbjct: 120 VLFSPQDIQLITGSPSERRKYVDETLSQVDIEYKRSLNDYLKAVRQRNKLLEKINQGFGG 179 Query: 171 YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETE 229 ++ + +++ E I R + A I + +T K + L ++ +K Sbjct: 180 QGEIEFYTHQMLKNGEIIQRKREQMFADIKPILLETGKILNDKKTKLELNY----KKNEI 235 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L R+ + GPH+ D I + V + SRG+ + + +L++A+ F+ Sbjct: 236 SIERLNEFKSREIAAMTSLLGPHRDDFEIHFNDHNVTNFGSRGEQRSCVLSLKIAEISFI 295 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 ++ + + L+DD SELD + + + + ++Q +++ S + Sbjct: 296 EKKKNDKPVLLLDDIFSELDKKHQTAVFDVIN--RNQTTITSTSMPDFPNEEGIK 348 >UniRef50_A9FMJ8 DNA replication and repair protein recF n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FMJ8_SORC5 Length = 383 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 148/366 (40%), Gaps = 13/366 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L RL IR+FRN+ D+ +P N + G NG GKTS+LEAIY R+FR+ ++ ++R Sbjct: 17 LERLHIREFRNLGRVDVEPAPRINVIAGNNGQGKTSLLEAIYFAATSRSFRTHRLAELVR 76 Query: 63 HEQEAFVLHGRL-QGEERETAIGLTKDK---QGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 H R + + + + VRIDG +A A P+ Sbjct: 77 HGAPIASARARFVERRDALQPLAREQTAAVEHKRCVVRIDGNRPPSLASFATRSPVVAFH 136 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-----RQVTRYEQ 173 E L G RR LD +P + + L+ R+ L Q + Sbjct: 137 AEELALSTGPASARRTLLDRLALFMDPQSADHRARYAQALRARHELLHRGGGAQAQASAE 196 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWE-KETEYA 231 L ++ ++ R +A ++ + P+ +L + G + Sbjct: 197 LDAFEALCALHGAALTRAREAAVQALAPELTHAFARIAAPDLTLAARYAPGGGGDAEQAR 256 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L RD +GPH+ DL + DG P S+GQ + L AL+ A+ + Sbjct: 257 EALREQRRRDAHRPSAGYGPHRDDLLLELDGHPARVVASQGQHRALTLALKAAETAAIAS 316 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHV--IDMSDENSKMFT 349 G + L+DD +SELD +R L L + QVF++ + + + + F Sbjct: 317 VRGVEPILLLDDVSSELDPDRTAALFMFLGMARGQVFLTTTRRDLIVTPGVPSSERRDFH 376 Query: 350 VEKGKI 355 VE G + Sbjct: 377 VEGGAV 382 >UniRef50_C9LFM2 DNA replication and repair protein recF n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LFM2_9BACT Length = 342 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 7/340 (2%) Query: 25 FNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGE-ERETAI 83 N VG NG GKT++L+AIY L ++ RS ++H ++AF+L G + E I Sbjct: 2 VNCFVGDNGMGKTNLLDAIYYLSFCKSARSSTDVTNVKHGEQAFMLQGLYDDDTGGEDKI 61 Query: 84 GLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHN 143 + + ++R +G D + AE +P+ +I+P L+ GG RR F+D Sbjct: 62 AIGYHEGRRKQLRRNGKDIKRFAEHIGTIPLVMISPSDSELVTGGSDNRRRFMDTVIAQY 121 Query: 144 EPGFFTAWSNLKRLLKQRNAALRQVT--RYEQLRPWDKELIPLAEQISTWRAEYSAGIAA 201 + + A ++ L+QRNA L++ + + + + A I R + A Sbjct: 122 DATYLEALMRYEKTLRQRNALLKKEEEPEADVISIIEDIMSRDAAIIYQGRKLFVETFTA 181 Query: 202 DMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD 261 ++ + E +LE+ R+R + YT HG HK DL + + Sbjct: 182 FFQGIYRELCYDPEQVNIVYESHGNRGELKPMLEQYRSRERLVGYTLHGIHKDDLLLYIN 241 Query: 262 GAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG-RRCLYLIDDFASELDDERRGLLASRL 320 G PV+ S+GQ K AL+LAQ +L +S R+ L L+DD +LD R + Sbjct: 242 GYPVKQEASQGQTKTYFIALKLAQYVYLRTKSSLRQPLLLLDDIFDKLDAGRVEHIIRYA 301 Query: 321 KATQ-SQVFVSAISAEHVIDM--SDENSKMFTVEKGKITD 357 Q Q+F++ S E ++ + N K+FTV+ G+I + Sbjct: 302 AEAQFGQIFITDTSKERLLPILQLQRNYKLFTVKDGEIHE 341 >UniRef50_D2M5C4 DNA replication and repair protein RecF n=1 Tax=Rhodopseudomonas palustris DX-1 RepID=D2M5C4_RHOPA Length = 394 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 144/373 (38%), Gaps = 19/373 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +TRL + FRN +A L + LVG NG+GKT+ LEA+ L GR R ++ + Sbjct: 20 RITRLTLTHFRNYRSASLTTTADQVVLVGPNGAGKTNCLEAVSLLSPGRGLRRARLEDIA 79 Query: 62 RHEQE-AFVLHGRLQGEERETAIGLTKDK-----QGDSKVRIDGTDGHKVAELAHLMPMQ 115 HE + ++ + ++G +G + + RID A + M Sbjct: 80 GHEGDGSWAVSAEVEGALGLATLGTGIEPPRGDVATTRRCRIDREPVGSAAAFGDHLRMV 139 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--Q 173 +TP L G RR F D + G S L R L+ RN L + + Sbjct: 140 WLTPSMDGLFMGAASERRRFFDRLVLAIDSGHSARVSALDRSLRSRNRLLEDIRNADSHW 199 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMA---------DTCKQFLPEFSLTFSFQRGW 224 L ++E LA ++ R + + +AA + + + Sbjct: 200 LDAIERETAELAIAVAAQRGQTATKLAAMIDARGATSAFPSARIMLDGWMESALASEPAT 259 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRL 283 E Y VL N RD T GPH DL + + S G+ K L+ L L Sbjct: 260 VVEDRYRAVLRDNRSRDAAAGRTLDGPHLTDLEVIYAPKAMPAREASTGEQKALLIGLVL 319 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A + + + L L+D+ + LD RR L L +QV+++ Sbjct: 320 AHAQLVAETTSITPLLLLDEVVAHLDPGRRAALFGELSRLGAQVWMTGADPLAF-AEIGP 378 Query: 344 NSKMFTVEKGKIT 356 + +F V+ G+I+ Sbjct: 379 AAAIFDVDNGRIS 391 >UniRef50_A9NE68 DNA replication and repair protein recF n=2 Tax=Acholeplasma laidlawii RepID=RECF_ACHLI Length = 349 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 80/333 (24%), Positives = 155/333 (46%), Gaps = 11/333 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 +T + +R+FRN+E + ++ + G NG GKTS+LE+IY ++ RS +I+ Sbjct: 2 ITSIELRNFRNLENYKVLINKPLVIIQGLNGVGKTSILESIYFAATTKSHRSSVEKDMIQ 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 +++ + + E + + I+ ++ K+++ + + + PE Sbjct: 62 YDKPYASVKLIEDSKLHEIVLT-----PNGKRTTINKSEVRKISDYIGQLRVVMFAPEDL 116 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ---LRPWDK 179 L+ G P RR FLD + ++ K++LKQRNA L++ L + Sbjct: 117 MLIKGSPSERRYFLDMELMQVSKTYLRNLNSYKKILKQRNALLKKNRNLTDYTFLNILGE 176 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 +L + QI R ++ + ++ +F + ++ KE + + L+ + Sbjct: 177 QLYDVGIQIFDERQKFIEALNQKFKTIQTKY-KDFEVEMLYEPNVTKE-NFLKHLKTKQK 234 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +D T G HK D ++ G +D+ S+G +L++ L+LA E++ + + Sbjct: 235 QDIMYETTTAGIHKDDFKLLYKGLNAKDSASQGTSRLIVIELKLALLEWIKEVTKTDAIL 294 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 L+DD SELD ER+ L S+L + QVF++ Sbjct: 295 LLDDVLSELDLERQNLFMSQL-SKNHQVFITTA 326 >UniRef50_A0Q8R8 DNA replication and repair protein recF n=20 Tax=Actinomycetales RepID=RECF_MYCA1 Length = 385 Score = 263 bits (673), Expect = 6e-69, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 154/384 (40%), Gaps = 29/384 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +RDFR+ ADL L PG +G+NG GKT++LEA++ + R + Sbjct: 1 MYVRHLGLRDFRSWAHADLELQPGRTVFIGSNGFGKTNLLEALWYSSTLGSHRVGTDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR + V+ + + RE A+ L +K R++ + E+ ++ L PE Sbjct: 61 IRAGADRTVVSTIVVNDGRECAVDLEIAAGRANKARLNRSPVRSTREVLGVLRAVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---------RY 171 L+ G P RR +LD P ++ ++L+QR A L+ ++ Sbjct: 121 DLALVRGDPSERRRYLDDLATLRRPAIAAVRADYDKVLRQRTALLKSLSGARHRGDRGAL 180 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA 231 + L WD L Q+ R + +A ++ + P R A Sbjct: 181 DTLDVWDSRLAEYGAQLMAARIDLVNQLAPEVEKAYQLLAPGSRAASIGYRSSLGAAAAA 240 Query: 232 EVLERNFER---------------DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 EV + + + + GPH+ DL + + S G+ Sbjct: 241 EVNAGDRDYLEAALLAGLAARRYAELERGVCLVGPHRDDLELWLGEQVAKGFASHGESWS 300 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 L +LRLA E L + + L+DD +ELD RR LA+ ++ + QV V+A E Sbjct: 301 LALSLRLAAYELLRADESD-PVLLLDDVFAELDAARRRALAAVAESAE-QVLVTAAVLED 358 Query: 337 VIDMSDENSKMFTVEK---GKITD 357 + + G++++ Sbjct: 359 IPAGWQARRLFVELRDTDAGRVSE 382 >UniRef50_B9CLS4 DNA replication and repair protein recF n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLS4_9ACTN Length = 361 Score = 263 bits (672), Expect = 8e-69, Method: Composition-based stats. Identities = 72/357 (20%), Positives = 138/357 (38%), Gaps = 14/357 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + + + +FRN + S LVG N GKT+ +EA+ L G +FR +++ Sbjct: 4 IVNNISLVNFRNFRMLSVDFSQSITILVGHNAVGKTNTIEALQMLTAGYSFRKPTPVQLM 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 ++ +H L G+ R + T + +G H ++ + L TP+ Sbjct: 64 LEGEKQSKIHAHLTGDGRVIDLSCTIS-SLRRQYEKNGKKCH-ATDIPGDLMSVLFTPDD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKE 180 + YRR +D + + R ++QRN L++ + L WD Sbjct: 122 LACIKRSASYRRGEIDDFGKQANKTYAKVLAAYLRSIEQRNRLLKENVVDFSLLSAWDTS 181 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG----------WEKETEY 230 + + R + ++A ++ KQ L ++ E ++ Sbjct: 182 VALGGATLLCARLKLFRRLSAKTSEIYKQISGGEDLVLRYESSIGEISADQTKEELLDKF 241 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLT 290 L+ D + T GPH+ D+ +G S+GQ + ++ AL++A+ Sbjct: 242 LSSLKDAHGVDERRQQTTVGPHRDDIVFLINGKDARMYGSQGQQRSVILALKMAEVLVSE 301 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 G + L L+DD SELD RR + + Q ++ + + + +K+ Sbjct: 302 EILGTKPLLLLDDVMSELDKSRREAIMNFTFG-DIQTVITTTNLGYFSPDMVDVAKV 357 >UniRef50_Q8RHA9 RECF protein n=13 Tax=Fusobacterium RepID=Q8RHA9_FUSNN Length = 369 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 87/370 (23%), Positives = 162/370 (43%), Gaps = 20/370 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ + +FRN+E + LS N G N GKTS+LEAIY G +F++ + + Sbjct: 1 MKISNISYFNFRNLENTSIDLSDKINVFYGKNAQGKTSLLEAIYYSSTGISFKTKKTSEM 60 Query: 61 IRHEQEAFVLHGRLQG--EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 I++ + F+ Q + ++ + + + + + Sbjct: 61 IKYNFDEFISSISYQDYIANNKISVRFKNIAGAKKEFFFNKKRI-SQTDFYGKINIIAYI 119 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR-YEQLRPW 177 PE L+NG PK+RR F D + + T N +LLK RN L++ R E+ + Sbjct: 120 PEDIILINGSPKHRRDFFDIEISQIDKEYLTNLKNYDKLLKIRNKYLKENKRNSEEFAIY 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEY-AEVLE 235 +KE I A I R EY ++ + ++ L ++ +K + E+++ Sbjct: 180 EKEFIKYASYIIFTRIEYVKSLSIILNLQYRKLFNIAQELNLRYETSLDKTAKVTIEMIQ 239 Query: 236 RNFERDR--------QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 + +R+ + ++ GPHK D + +G + + S+G+ K ++ +L+L++ E Sbjct: 240 ESLKREISQKKYQEDKYKFSLVGPHKDDYKFLLNGHEAKISASQGEKKSIIFSLKLSEIE 299 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 + + + +IDD S D++RR + QV +S+ + +K Sbjct: 300 IIKKNRKENPVVIIDDITSYFDEDRRKSILDFFNKRDIQVLISSTDKLDI------EAKN 353 Query: 348 FTVEKGKITD 357 F VEKG I D Sbjct: 354 FYVEKGIIKD 363 >UniRef50_C0WAM4 DNA replication and repair protein recF n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAM4_9FIRM Length = 377 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 147/374 (39%), Gaps = 27/374 (7%) Query: 7 LIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQE 66 + FRN + LS + G N GKT++LE +Y G +FRS +++ + Sbjct: 2 RLHHFRNYGDLTMNLSHDLTVIYGRNAQGKTNLLEGLYYAAMGFSFRSRHDEELVKFGET 61 Query: 67 AFVLHGRLQGEERETAIGLTKDKQG---DSKVRIDGTDGHKVAELAHLMPMQLITPEGFT 123 E + + + ++G + + +GT E + + L TP+ Sbjct: 62 DCAAEVTYCDRYGENRLLVKRIQEGKRTRKQAQRNGTPI-SPKEHYGSLNLVLFTPDDLQ 120 Query: 124 LLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-----QLRPWD 178 L+ G P RR FLD ++ A N R+L+QRN LR E QL WD Sbjct: 121 LVKGDPSLRRRFLDMEIAQTSRFYYEALQNYNRVLQQRNRFLRHCRDQEKLDEGQLFVWD 180 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQ--------------RG 223 + L A I R + I +T S+ Sbjct: 181 EALSRSAAVIVFERLKAMEEIERAAGLVYGTITQDREKMTLSYLQKRSDGEGVPPKGLSL 240 Query: 224 WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRL 283 E + Y E L++ D YT+ GPH+ DL I +G P+ S+GQ + AL+L Sbjct: 241 SEWQAFYQEELKKRHRLDYVRGYTSMGPHRDDLEILQEGRPLRSFGSQGQQRTAALALKL 300 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 ++ EF+ + L+DD SELD+ RR +L + Q ++ + S Sbjct: 301 SELEFIFHSKEEYPILLLDDVLSELDEGRRRMLLDGMGGK-VQTLLTVNDRA--LARSSG 357 Query: 344 NSKMFTVEKGKITD 357 + + V G + + Sbjct: 358 DVVFYEVRSGWVEE 371 >UniRef50_Q3AUE9 DNA replication and repair protein recF n=1 Tax=Chlorobium chlorochromatii CaD3 RepID=Q3AUE9_CHLCH Length = 364 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 77/365 (21%), Positives = 145/365 (39%), Gaps = 17/365 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R + FRN + S G + GANGSGKTS+LE I+ + Sbjct: 1 MKLQRTIFSGFRNHTSLLFEPSEGVTIIYGANGSGKTSLLEGIHYGALTKGLLGAPDSEC 60 Query: 61 IRHEQEAFVLHGRLQGEER-ETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + EAF L + + +T +G+ +V +D + + +P +P Sbjct: 61 LSFDTEAFTLDSHFLSDSNIPIHVLVTYQLEGEKQVIVDRQEVKPFSSHIGRIPTITFSP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-----L 174 +L++G P RR FLD + + +R+L+QRNA L Q++ E+ L Sbjct: 121 YEISLVSGPPAERRRFLDSAISQLDHRYLDRLITYRRILQQRNALLAQLSSGEKSNRNTL 180 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW---------- 224 W +L L+ + R + + + + + +++ Sbjct: 181 PLWTTQLAELSAWLVERRLLFLTSFSPYFQHYYRYIIKGEEPSINYRCTSCPLHGNTTFQ 240 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLA 284 E + + ++ Q T G H+ D+ + ++ S+GQL+ + AL+++ Sbjct: 241 ELYQLFLQRYSDIEAQEIQRGQTLFGAHRDDVLFFLNEKEIKRYASQGQLRSFLIALKIS 300 Query: 285 QGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 Q + + L DD SELD R + + LK Q ++A+ + ++ + Sbjct: 301 QAHLFADHLHEQPMCLFDDLFSELDGGRIEQILALLKECG-QTIITAVEPRYTEGITLCD 359 Query: 345 SKMFT 349 + Sbjct: 360 IQALR 364 >UniRef50_A8SK35 DNA replication and repair protein recF n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SK35_9FIRM Length = 366 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 77/357 (21%), Positives = 145/357 (40%), Gaps = 15/357 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ + +FRN++ N VG NG GKT+VLEAIY +FR + Sbjct: 1 MIVEKIHLTNFRNLKDISFEFKENINVFVGKNGIGKTNVLEAIYISLVASSFRQAKQEDF 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + + ++ + E I +ID V EL + P+ Sbjct: 61 ISFGENFTKVDTFVREKGFENKISFLYTDDKKKVFKIDDIKIKSVNELYDFSNVIGFFPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLRP 176 ++ P +RR F D G+ + + ++ +RN L+ + +++ Sbjct: 121 ELKIITESPNFRRNFFDSFIMKMTKGYKQKLNLYRNVIFRRNLLLKGMNLSSFYKQEMNA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE--------T 228 K+L L +IS R + I ++ +Q E +L ++ Sbjct: 181 LTKKLALLCYEISMERKKLIDLINKEVNFIHQQLSGE-TLYIEYESILSNHKRSENECLK 239 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 E E ++++ D + T+ G HK + + +G + S+GQ + ++ +++ Q Sbjct: 240 EILENFSKSYKIDSENKITSFGIHKENFKFILNGNDAKSFSSQGQKRNIIITIKMCQKNI 299 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 G + + L+DD SELD++RR + L T +QVF++ V + N Sbjct: 300 FEEYKGVKPIILLDDLFSELDEDRRYEILEYL--TDNQVFITTTDKSFVNRYKNINV 354 >UniRef50_C8WEM6 DNA replication and repair protein recF n=5 Tax=Zymomonas mobilis RepID=C8WEM6_ZYMMN Length = 376 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 157/374 (41%), Gaps = 21/374 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + L G L G NG GKT++LEAI L GR FR + + Sbjct: 1 MFISGLSLHDFRSHQQIRLQAEAGLVILTGENGVGKTNILEAISLLSPGRGFRGSPLPDL 60 Query: 61 IRH-EQEAFVLHGRL---QGEERETAIGLTKD---KQGDSKVRIDGTDGHKVAELAHLMP 113 +R + F + +L + R + + + +VR++G L+ + Sbjct: 61 VRREGEGGFAISAKLHPLESSGRIDPVTIGIGLAPRASSRQVRVNGVT-TSANALSEWLA 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE- 172 + +TP L G RR FLD P +S + ++QRN L Y+ Sbjct: 120 ILWLTPAMDRLFQEGASSRRRFLDRLTLTIFPSHARHYSRYEAAMRQRNKLLSDEKGYDP 179 Query: 173 -QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS---------FQR 222 L ++ + A I R + ++ ++A + L Sbjct: 180 LWLDGLEQIMAEQATHILLARRQLVDLLSEEIAKQEDGLFAKADLALEEGVDSRDLVTHN 239 Query: 223 GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCAL 281 E + +++ D + T G H+ADL++ + S G+ K L+ L Sbjct: 240 SEEIMPLLQNIWQKSRTSDAAIGRTLQGVHRADLKVTHHAKAMPAAQSSTGEQKALLLGL 299 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 LAQ +T ++G+ + L+D+ A+ LD RR +L L++ QV+++ + + Sbjct: 300 VLAQVNLITEKNGQPPVLLLDEVAAHLDPSRRAILFDILRSKGGQVWMTGTEPSLF-ETA 358 Query: 342 DENSKMFTVEKGKI 355 ++ + F ++KG+I Sbjct: 359 EDAACYFQLDKGEI 372 >UniRef50_B9ML39 DNA replication and repair protein recF n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9ML39_ANATD Length = 353 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 87/342 (25%), Positives = 142/342 (41%), Gaps = 11/342 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + + +FR + N +VG N SGKTS+LEA+Y G++F+ + Sbjct: 1 MKIKSIYVENFRGYKQRFFEFKDKMNLIVGNNASGKTSLLEALYFCMCGKSFK-SRDIDA 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + F L + + E + DK D ++ I+ K++EL P+ Sbjct: 60 INFDSFYFKLEMLAEVGDTEYNVFCYVDKALDKRIMINDKKIKKLSELISTFKFVFFEPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ PK RR FLD P +S R L RNA L+ + + + +D + Sbjct: 120 ATELIKHQPKLRRRFLDMEVTKLYPYMTKVYSEYHRALLSRNAFLKSYDKKDIIDVYDMQ 179 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK--ETEYAEVLERN 237 + L I R E ++ + S L + E EY + +++N Sbjct: 180 ISQLGFLIFQKRQEVINKLSIEAQKIFSLVFENKSMLELKYMPSIAASTEKEYYKEIKKN 239 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 E+D L YT G H+ D I D P + S GQ+KL ++ LA + Sbjct: 240 IEKDLSLGYTTKGVHRDDFEILIDKKPAINFASEGQIKLAAVSVVLATSLLYSE-----P 294 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVID 339 + ++DD SELD +R L + Q FV++ V++ Sbjct: 295 VLILDDVFSELDSFKRKNLVKFISQY--QSFVTSAEDLSVLE 334 >UniRef50_UPI0001C311AF DNA replication and repair protein RecF n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C311AF Length = 370 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 84/361 (23%), Positives = 151/361 (41%), Gaps = 7/361 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + RL +R+FR+ TA++ L G + G NG+GKT++L+A+Y GR+ R+ + Sbjct: 1 MRIVRLALRNFRSYPTAEVELGAGLTVVSGRNGAGKTNLLDALYFGCTGRSARTTNDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + + ++ + + + ++ DG ++ ++ + + P+ Sbjct: 61 VRFGEQVTRVVVMTEADDGAHELSVAFESGQPKRLMADGVRVERLLDVPGRPLVSVFLPD 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----RYEQLRP 176 L+ G P RRA +D P + L QRNA + ++ L Sbjct: 121 RLELVKGTPSLRRAHIDQVVAALWPARAATRRAYAQALAQRNALVARIRAGGASAASLPA 180 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKET--EYAEVL 234 WD+EL + RA + + + +++ E L Sbjct: 181 WDRELARHGVALMADRAAAIESVQTRFGTIAGELGLDGDPAVAYRPRSRAADAGGLEEEL 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 D + +T HGPH+ DL + + + S+GQ +L + AL LA+ E + Sbjct: 241 AERHASDLERGFTQHGPHRDDLALTRERRELRAYGSQGQQRLTLLALLLAEREAIAATRD 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L+DD SELD ERRG L L+ Q ++ EHV + +V G Sbjct: 301 AVPVMLLDDVMSELDRERRGRLVELLRGVG-QSVITTTDLEHVPGAEGADVTRLSVRDGV 359 Query: 355 I 355 + Sbjct: 360 V 360 >UniRef50_C7REZ8 DNA replication and repair protein RecF n=4 Tax=Anaerococcus RepID=C7REZ8_ANAPD Length = 359 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 85/361 (23%), Positives = 162/361 (44%), Gaps = 11/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FRN ++ + N +G N GKT++LE++Y L + +F+ ++ + Sbjct: 1 MRIKDLKLNNFRNYFYENVEFNKDSNIFIGDNAQGKTNLLESVYYLANASSFKKIRDKDI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R Q L G ++ + + K D + ++G + +L L + L TPE Sbjct: 61 VRFGQSQMKLAGTIRKGRSFKEVFIEV-KDNDKSIFVNGVKYDRRKDLRSLFKIVLFTPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---YEQLRPW 177 ++ GP RR +D + + + ++L QRN L++ EQL + Sbjct: 120 DLGIIKDGPNRRRDLIDEIIEEIDLSYKANKRDYDKILYQRNKLLKKQKAPYFKEQLEAF 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKE--TEYAEVL 234 DK L L+ +I R ++ + ++ + L S++ E + TEY EV Sbjct: 180 DKSLTKLSYKIYKTRDKFIKIVDKFASEFHSSLTENKEELKLSYKADIEAKSLTEYEEVF 239 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + D + + G H+ ++ I +G + S+GQ + + +RLA+ + +G Sbjct: 240 RSARDLDFKYLTSQRGIHRDEIEISINGKNTKSFASQGQQRSAILNIRLAEVRLIKEVTG 299 Query: 295 RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 + L DD SELD++R L LK Q ++A + + + + + K+ + GK Sbjct: 300 DEAVILFDDVFSELDEKRSMFLLENLKGF--QTIITATNTKSLEYV--DREKISYILDGK 355 Query: 355 I 355 I Sbjct: 356 I 356 >UniRef50_A6G5S6 DNA replication and repair protein recF n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G5S6_9DELT Length = 406 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 101/401 (25%), Positives = 148/401 (36%), Gaps = 47/401 (11%) Query: 1 MSLTRLLIRDFRNIETA---------DLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRA 51 M L RL + DFRN A +LA F L G NG+GKT+VLEA+Y R+ Sbjct: 1 MELRRLTLADFRNFRGATPEQPGPGVELAFGERFTVLWGHNGAGKTNVLEALYLCSTLRS 60 Query: 52 FRSLQIGRVIRHEQEAFVLHGRLQGEER------ETAIGLTKDKQGDSKVRIDGTDGHKV 105 FR+ ++R Q+ + ++ E I + R+DG Sbjct: 61 FRTTDAKALLRRGQDHARVELEAFDDDLGLDTCLEVRIDRG-ARSTRRSARVDGKLVRSA 119 Query: 106 AELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL 165 + + L TPE +L G P RR FLD F + ++LL+ RN L Sbjct: 120 TDFYGRVQAVLFTPEDLGILRGSPGGRRQFLDRVLFARQRAHIADVQRYEKLLRSRNRVL 179 Query: 166 R-------QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--- 215 + + R L +D L + QI R + A Sbjct: 180 KTDPAELPRAERTRMLDTYDHGLAEVGAQIWDRRQGLVEDLREPFAAAFAHIHDRRDPGE 239 Query: 216 ---------------LTFSFQRGWE------KETEYAEVLERNFERDRQLTYTAHGPHKA 254 LT Q ++ A+ L RD T GPH Sbjct: 240 GGAALAAGLAYGARVLTRESQPATAVEDLPGRQQALAQALRDTRRRDEAAGRTTVGPHLD 299 Query: 255 DLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRG 314 DL +R DG D S+GQ + L+ A ++A+ + GRR L+DD +SELD R Sbjct: 300 DLHVRLDGVEAGDFASQGQARALVLAFKIAELRDAQQRHGRRPTLLLDDVSSELDPRRSA 359 Query: 315 LLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 L L Q ++ A ++ + + V G+I Sbjct: 360 RLFETLAQEVGQCVLTTTDARYIELGAGVERRDLQVRDGQI 400 >UniRef50_B9ZMT5 DNA replication and repair protein RecF n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZMT5_9GAMM Length = 357 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 8/358 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L R RN+ G N LVG NG+GKTSVLEA + L GR+FR+ Q+ RV+R Sbjct: 2 LEGLWWRGVRNLSEQTFEPGEGINRLVGPNGAGKTSVLEACHVLAAGRSFRTPQLRRVVR 61 Query: 63 HEQEAFVLHGRLQG-EERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 ++ + GR++ E +G++ +G + R+DG A +A +P++++ Sbjct: 62 SGEKGLWIGGRVRDLHGGEHRLGVS--WEGTRRSRLDGRWMEGHASVAEWLPVRVLHAGS 119 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 F LL G P+ RR LDWGCFH+ G+ W +R +QRNAALR+ R R +++ L Sbjct: 120 FDLLTGSPEERRRLLDWGCFHSVRGYRWHWQQWRRSHEQRNAALRKGDRRAA-REFERPL 178 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL---TFSFQRGWEKETEYAEVLERNF 238 + E I+ R Y + ++ + F L + GW+++ +E + R+ Sbjct: 179 VDAGENITQARQAYIDRWEINTSEAARVFGFSQRLGDFQVHLRVGWDRDRSLSEAIARSR 238 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 + D + + GP +AD+ +R DG + SRG+ K L+ AL Q L RE+GR + Sbjct: 239 DSDEERGFGQVGPQRADIDLRFDGRVAAE-ASRGEQKRLITALTGGQARMLEREAGRAPV 297 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 L+DD SELD L L QV V+ + ++++F VE G +T Sbjct: 298 VLLDDVVSELDVAAVEGLMCGLLEFGWQVLVTTVEPHIPGLEGGRSTRLFHVEHGVVT 355 >UniRef50_C0VY05 DNA replication and repair protein recF n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VY05_9ACTO Length = 399 Score = 261 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 167/397 (42%), Gaps = 42/397 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L PG L+G NG GKT+V+EAI L H + R + Sbjct: 1 MYVSHLALNDFRSYKETLIELKPGITVLLGYNGQGKTNVIEAIAYLAHLSSHRVNADTAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 +R+ Q A V+ +L +RE + + K ++ R++ K +L + + Sbjct: 61 VRYPQNGENPPAAAVIRAKLHKAQRERILEIEIVKGKANRARLNRAPA-KPRDLLGEIKV 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT----- 169 + PE L+ G P RR FLD P + ++ +++LKQR + L+Q+ Sbjct: 120 IVFAPEDLNLVKGDPAGRRHFLDSIATQLWPSYGVVKADYEKVLKQRASLLKQLGKSLRA 179 Query: 170 ----RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTC-------KQFLPEFSLTF 218 Y L WD+ LI A Q+ + R + + + K+ E+ + Sbjct: 180 GMKPDYAMLEIWDQPLINYASQLISLRLKLLKMLTKPANEAHKIVANGVKELRLEYVNSL 239 Query: 219 SFQRGWEKETEYA------------EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVE 266 + G + A +VLE + GPH+ DL + D PV+ Sbjct: 240 AEYSGEVDVNKLATDDIEAYQVLMKQVLESLRSAEVIRGVNLLGPHRDDLDLWLDELPVK 299 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESG----RRCLYLIDDFASELDDERRGLLASRLKA 322 S G+ + ALRL E L E + ++DD SELD +RR L + Sbjct: 300 GFASHGESWSVALALRLGCFEILCSEDYLGAVETPILILDDVFSELDGKRRKALLEAISG 359 Query: 323 TQSQVFVSAISAEHVIDMSDEN--SKMFTVEKGKITD 357 + QV ++A A + + + S F + G + + Sbjct: 360 AE-QVIITAAVAGDIPTEIEADVLSVNFAKDTGSVCE 395 >UniRef50_B1ZSD3 DNA replication and repair protein recF n=2 Tax=Opitutaceae RepID=RECF_OPITP Length = 366 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 12/361 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN+ A LA S FLVG NG GKT++LEA L R+FR+ + Sbjct: 1 MRLRHLTLRHFRNVGFAALAFSGRQQFLVGLNGQGKTNLLEAAGFLTALRSFRTTDNKLL 60 Query: 61 IRHEQEAFVLHGRLQGEE-RETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 I+H Q + L E+ +T + + + G ++ D T ++A+ P + + Sbjct: 61 IQHGQHTGAISSELTHEQLGDTKLTIKLRRDG-KELWSDATRVTRLADHLGRFPTVVFSS 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWD 178 + L+ G P RR +LD + G+ A R L RNA L++ + +L ++ Sbjct: 120 QDLHLVRGAPALRRRWLDLTLASMDAGYLRALQTYSRALADRNALLKRGNAADAELDAFE 179 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLP---EFSLTFSFQRGWE--KETEYAEV 233 ++L P A + R A + A +A + + ++ ++ + Sbjct: 180 QQLAPAAVALLATRTAALALLGAKLAVAYDRLCAGDAAEKVGLHYEPSFDGPSTEAWLAR 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 E + RD Q T GPH+ D G +D S GQ + L+ ALRLAQ E+ +S Sbjct: 240 FESSRGRDAQFRTTLVGPHRDDFSFVVRGTAAKDFASEGQQRSLVLALRLAQAEWGHEKS 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 G R + L DD ELD RR + + +SQ+ + S + D ++F V+ G Sbjct: 300 GTRPVLLADDVLGELDPLRRRRFWASIDP-ESQILATGTS---LPDAELGEWQVFEVKSG 355 Query: 354 K 354 + Sbjct: 356 E 356 >UniRef50_C2D9K4 DNA replication and repair protein recF n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9K4_9ACTN Length = 382 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 146/378 (38%), Gaps = 31/378 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L ++RN + ++L L G+N GKT+ +EA+ + G +FR + ++I Sbjct: 5 LHELTCTNWRNFQHLRISLGDKTTVLHGSNAVGKTNTIEAVQMITTGTSFRKPLLTQMIY 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H + A L + E + + ++ + V+ L +MP L +P+ Sbjct: 65 HNENAARLCAVYEDELHSVELACNISTHSKTYLK-NDKKC-SVSTLCSVMPSVLFSPDDL 122 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDKEL 181 + +YRR+ +D G+ R L+QRN L+ ++ + L W L Sbjct: 123 LFVKQTARYRRSEIDGFGILAHKGYRKLIKTFSRALEQRNNILKLPLSDSDILHAWSVSL 182 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG------------------ 223 + + R + + + + P L ++ Sbjct: 183 AHGSASVVAARLKLINHLYSKACEVYHTISPAEQLEIKYKSSIPLIKDLEHKVEEPYMYT 242 Query: 224 ---------WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQL 274 + Y + + + + + T GP + D+ +G P S+GQ Sbjct: 243 PQSLSSLSKEDLVQSYLDAFSQKEQEELRRQVTLIGPQRDDIEFYINGIPARTYASQGQQ 302 Query: 275 KLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + ++ A +LA+ F+ +G+ + L+DD SELD+ RR + ++ Q ++ + Sbjct: 303 RSIVLAWKLAEVLFIKELTGQNPILLLDDVMSELDETRRLAIMEFIQQ-GIQTIITTTNL 361 Query: 335 EHVIDMSDENSKMFTVEK 352 + + +++ + + Sbjct: 362 SYFTKDILDRAQVVNMNE 379 >UniRef50_B2UPF6 DNA replication and repair protein RecF n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UPF6_AKKM8 Length = 351 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 89/355 (25%), Positives = 156/355 (43%), Gaps = 10/355 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 ++RL + DFR + + ++G N GKTS+LEA+ L ++ R+ + G ++ Sbjct: 2 ISRLKLMDFRCYGSFSWQIPQQGAIILGNNARGKTSLLEAVCFLLRLQSPRTARTGPLVS 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAE-LAHLMPMQLITPEG 121 H +++F + G L G+ I +R++G LA P+ + + Sbjct: 62 HGKQSFGIRGELPGQ-----IRRILWAPDAPDLRVNGEPRKDQRSYLADSYPVVWMGNDD 116 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKE 180 +L+ G RR ++D+ PG+ A + +R LK RN L+ R + QL + ++ Sbjct: 117 LSLVQAGADARRKYMDFLGSQWHPGYRLALFSYRRALKTRNYLLKHRHRDKLQLDAYTRQ 176 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L ++ RA A +A +A + R E+ + E L + +R Sbjct: 177 LALHGTELRNLRANLLALLAPHIALAYRNIGGRQEQVSIAYRASEEG-DLYERLCASMDR 235 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D + T +GPH+ DL I +G S GQ + +++LAQ LT E+G ++L Sbjct: 236 DIRYGQTQNGPHRDDLDITLNGRNAAQFASEGQQRTTAISMKLAQSSLLTEETGHTPIHL 295 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 IDD ELD RR L +Q ++ + + + F +E G + Sbjct: 296 IDDVFGELDPTRRIAFLQSL-PADAQSLITTTHLDWLHNAPCPLPA-FRLEDGAL 348 >UniRef50_A7NF69 DNA replication and repair protein recF n=6 Tax=Chloroflexi (class) RepID=RECF_ROSCS Length = 394 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 160/392 (40%), Gaps = 38/392 (9%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +RDFRN E DL L PG L G N +GKT+VLEAIY L R+ R+ + Sbjct: 1 MYVTHLSLRDFRNYERLDLNLEPGVTLLYGPNAAGKTTVLEAIYFLATTRSPRAGADREL 60 Query: 61 IRHEQ-------EAFVLHGRLQGEERETAIGLTKDKQGD-----------SKVRIDGTDG 102 +R E L + + + + ++ + VRID Sbjct: 61 VRFEAQGDLGVPPFARLVCDVVRADGYVRLEVVVQRRAEEESAIGATPTIKTVRIDRKAV 120 Query: 103 HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRN 162 + +L + + L TP L+ G P RR +LD + + ++ +++++QRN Sbjct: 121 RAL-DLVGNLRVVLFTPADIALVTGAPAERRRYLDVTLSQIDGRYVRTLAHYQKVVQQRN 179 Query: 163 AALRQVTR--------YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PE 213 + LR ++L WD+EL + R + A + + Sbjct: 180 SLLRAWREGRRPLRYADDELAFWDRELAMAGAYLLRERLHAVVDLNALAGPLYCRMSGGD 239 Query: 214 FSLTFSFQRGW----------EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGA 263 LT ++Q E + L R + + T GPH+ DL I G Sbjct: 240 TPLTLAYQSSVAGIDSVTDSRAIEQAFLAHLTRLRDDEIGRGQTLIGPHRDDLLIAVGGV 299 Query: 264 PVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKAT 323 P+ SRGQ + +L+L + + + +G + L+DD SELD ERR + L+ Sbjct: 300 PIGAYGSRGQQRSATLSLKLGEAKLMRIRTGDAPVLLLDDLLSELDAERRSHVQDILERP 359 Query: 324 QSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 Q V+A + ++ + VE G + Sbjct: 360 DQQTIVTATGTDDFDLKFLTRARRWRVESGHL 391 >UniRef50_B9Y5K3 DNA replication and repair protein recF n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5K3_9FIRM Length = 368 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 88/363 (24%), Positives = 161/363 (44%), Gaps = 11/363 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + ++ +++FRN ++ P N ++G N GKT++LE+I L R+ R+++ + Sbjct: 1 MKINQIRLKNFRNYDSCQFIPDPHMNVIIGKNAQGKTNLLESIVLLSTTRSHRAVRDQDM 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR Q+ RL E E + +G + I + +E + L P Sbjct: 61 IREGQDFCKAECRL-NTEPEMVLSAVIHGKG-KTLMIHQKPVSRSSEFIGKLNAVLFAPS 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 L PK RR +D P + A S + +LLK+RN+ L++ L D+ Sbjct: 119 DLELFEAPPKVRRRLMDVEIGKVSPRYMQALSAMMKLLKERNSLLKREHLDNAMLEVLDQ 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE-------TEYAE 232 ++I I R ++ A + ++ T E + + ++ E + Sbjct: 179 QMIEQQLTIIAMRRQFIAKMNESLSRTYSALAEEEAQVSAAYHTITEQTEPDAMREEISR 238 Query: 233 VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N ERDR L T+ G H+ DL + +G V S+GQ ++++ A +L+ +F+ Sbjct: 239 KLLENRERDRILKTTSSGVHRDDLSFQLNGRDVLSYASQGQRRMIVLAWKLSLIDFIAER 298 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + L+DD SELD ++R L S + + Q F++ ++ K+ ++ Sbjct: 299 LNELPVLLLDDVLSELDQQKRVNLFSLISP-EIQTFITTTEIAELLPFLSRKPKIAEIDS 357 Query: 353 GKI 355 G+I Sbjct: 358 GQI 360 >UniRef50_Q3SMU8 DNA replication and repair protein recF n=10 Tax=Rhizobiales RepID=Q3SMU8_NITWN Length = 385 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 138/373 (36%), Gaps = 19/373 (5%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + RL + FRN A LVG NG+GKT+ LEAI L GR R + Sbjct: 9 RVRRLSLTHFRNYRAATFETRSNMIVLVGPNGAGKTNCLEAISLLSPGRGLRRATRDDIA 68 Query: 62 -RHEQEAFVLHGRLQGEERETAIGLTKDKQG------DSKVRIDGTDGHKVAELAHLMPM 114 ++ + +QG +G D G + RID A + M Sbjct: 69 DNTGDGSWAVSAEMQGALGLATLGTGIDAPGNEAAPSGRRCRIDREPVASAAAFGDHLRM 128 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQL 174 +TP L G RR FLD + S L+R L+ RN L + Sbjct: 129 VWLTPSMDGLFTGPASDRRRFLDRLVLAIDSEHSGRVSALERSLRSRNRLLEMRHHDDLW 188 Query: 175 R-PWDKELIPLAEQISTWRAEYSAGIAADMAD---------TCKQFLPEFSLTFSFQRGW 224 +++ LA ++ RA+ + A + + Sbjct: 189 CEAIERKTAELAVAVAAMRAQTVTRLTAALEARGGGSSFPAASIHLDGWMENALLTEPAT 248 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRL 283 E Y E+L + RD T GPH DL + + S G+ K L+ L L Sbjct: 249 VVEDRYREILRASRPRDAAAGRTLEGPHLTDLEVIYAPKNMPAKEASTGEQKALLIGLVL 308 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 A + +G L L+D+ + LD +RRG L L +QV++S ++ Sbjct: 309 AHARLVAEMTGIIPLLLLDEVVAHLDPDRRGALFGELAGLGAQVWMSGADPAAFANL-SA 367 Query: 344 NSKMFTVEKGKIT 356 S+ F V+ G+IT Sbjct: 368 GSETFRVDSGRIT 380 >UniRef50_D1AW63 DNA replication and repair protein recF n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW63_STRM9 Length = 358 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 79/366 (21%), Positives = 154/366 (42%), Gaps = 22/366 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + + FRN+ + LS GFN + G N GKTS +EAIY GR+FR+ + +I+ Sbjct: 2 IKEIFFSGFRNLIDKRIKLSRGFNLIYGENAQGKTSFMEAIYFGATGRSFRTKKNNEMIK 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 ++ + +L + K + K +G V + + PE Sbjct: 62 YDSNDAKIFVKLDNTSN---YSINLFKN-EKKYFKNGEKIKYV-DYIGDILAVSFIPEDV 116 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PWDKEL 181 L+ G P RR F ++ + + +++LK RN L+ E+L ++++ Sbjct: 117 ELVMGNPSIRRGFFNYEISQINKEYLHLIVDYEKILKVRNKMLKDKKHKEELYLIYNEKY 176 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS---------LTFSFQRGWEKETEYAE 232 I + +I R EY + + K L E+ + E Sbjct: 177 IDICAKILKIRKEYVDELNKYLDKNYKDLFNIEHNFKLIYENFLKIDDVSDIEENKKIIE 236 Query: 233 VLERNFE-RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 L ++ E D Q+ Y+ +G HK + +G S+G+ K ++ L++++ E + + Sbjct: 237 KLLKSKEIYDIQVGYSNYGVHKDEYIFELNGKNARHYSSQGEKKSIVFILKISEIELIEK 296 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVE 351 + ++ ++L+DD S D+ R+ + + Q F+++ ++ K F V+ Sbjct: 297 KENKKPIFLMDDITSFFDNFRKNQIIHYFLEKEIQCFLTSTEDLKIV------GKKFDVD 350 Query: 352 KGKITD 357 +G I + Sbjct: 351 RGIINE 356 >UniRef50_C5C7X6 DNA replication and repair protein recF n=19 Tax=Actinomycetales RepID=RECF_MICLC Length = 404 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 160/375 (42%), Gaps = 27/375 (7%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ ADL L+PG L+GANG GKT+++EAI LG ++ R ++ Sbjct: 1 MYLSHLTVADFRSYRWADLELTPGSTVLLGANGVGKTNLVEAIGYLGAQQSHRVSSDAQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R ++ + GR+ R A+ + ++V I+ + E ++ + PE Sbjct: 61 VRFGRDRARIAGRVHRGSRTVALKVEILPGRSNRVAINRGASVRAKEGLGILRTVVFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--------RYE 172 +L+ G P RR LD P A ++ +R+L+QRNA L+ Sbjct: 121 DLSLVTGEPGGRRRLLDQLMVQLRPALGEAAADYERVLRQRNALLKSGRGSRRWGPEEDA 180 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGW------- 224 L WD+ L ++ R +A + + + ++++ Sbjct: 181 TLAVWDEHLCAAGARLLHGRLHVLRLLARPLQEMYAALTNGSKAAAYAYESTVPLARGTH 240 Query: 225 -------EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLL 277 + T+ LE E +R T GPH+ +L + AP S G+ L Sbjct: 241 AEVPAVADLATDMRRTLEAQREEERARALTLVGPHRDELALFLGPAPARGYASHGETWSL 300 Query: 278 MCALRLAQGEFLTRESGRR---CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ALR+A + L + + ++DD +ELD RR LA+ + + QV V+A + Sbjct: 301 ALALRMAAYDVLVADDPDPDARPVLILDDVFAELDAARRRRLAALVHRAE-QVIVTAAAL 359 Query: 335 EHVIDMSDENSKMFT 349 E V + + + Sbjct: 360 EDVPEELTAHRVLIR 374 >UniRef50_A7HMS6 DNA replication and repair protein RecF n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HMS6_FERNB Length = 339 Score = 259 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 76/339 (22%), Positives = 142/339 (41%), Gaps = 22/339 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L +R+FR ++ G N + G NG+GKTS+LEAI L + R+FR + + Sbjct: 6 MLIESLRLRNFRCFSEYEVNFKDGINVIYGPNGAGKTSILEAIAYLSNPRSFRGGRDYHL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQ---GDSKVRIDGTDGHKVAELAHLMPMQLI 117 I+ F + G++ ++ I + + +DG + ++ + Sbjct: 66 IKFGTNFFEVSGKIVSGGKKHDITVIYKSDETKKEKIAYLDGNKVKRFRDIQEVFIAIPF 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRP 176 + + + +++G P RR F D + ++ N ++LL +RNA L + E++ Sbjct: 126 SFKDYLMIDGYPSQRREFFDEIFSLLDLEYYEILRNYEKLLDERNALLAEENVDREKVLK 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLER 236 E+ PLAE+I R ++ + P F + + + + +Y + Sbjct: 186 LANEMQPLAEKIVEKREIMINELSKYLD-------PMFKVEYVSEFKGKNIADYID---- 234 Query: 237 NFERDRQLTYTAHGPH-KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 D + T GPH D +G + S GQ +LL +L +A + + Sbjct: 235 ---EDIEKRVTTVGPHTHDDYVFYYNGYIAKYFASEGQKRLLYLSLIIAFKKLIEETKLY 291 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ++L DD + LD LL + QV ++ +S Sbjct: 292 EPVFLFDDPGNVLDPH---LLEKFISNLSGQVIIAGLSP 327 >UniRef50_C2KT37 DNA replication and repair protein recF n=3 Tax=Mobiluncus RepID=C2KT37_9ACTO Length = 436 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 152/403 (37%), Gaps = 57/403 (14%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + FR+ ++L PG N +GANG GKT+++EA+ L R+ + Sbjct: 1 MFVTNLALDWFRSYRQLVISLEPGVNVFLGANGQGKTNLVEALNYLAVLSTHRAGNDAAL 60 Query: 61 IRHEQEA---------FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHL 111 I + + E R + + ++ ++ + +L Sbjct: 61 IFRGTPEETPHAGIIRARVSPGITPEPRSDLLEIEIVSGKANRAMLNRHKV-RPRDLVGH 119 Query: 112 MPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY 171 + L PE L++G P RR+FLD P ++L + L+QR A LR V R Sbjct: 120 LSTVLFAPEDLELISGDPGVRRSFLDRIALQLHPVLAGVQADLHKTLRQRAAYLRDVARR 179 Query: 172 EQ------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF----------- 214 + L WD L+PL ++ R + + + + Q + Sbjct: 180 HEVLDEIQLEIWDDALVPLFAKVMRSRQDITLELQQLLPGIYAQIAGQAPHESETNPNEA 239 Query: 215 --------SLTFSFQRGWEK-------------------ETEYAEVLERNFERDRQLTYT 247 + +++ K ET+ L + + Sbjct: 240 TPTAENPVTARMTYRDNVSKTLGIDASARQIMFADTAVLETQIRAALRSRHLDEARRGVN 299 Query: 248 AHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASE 307 G H+ DL PV+ S G+ ALRLA+ L + G + L+DD +E Sbjct: 300 LCGTHRDDLEFCLHDFPVKGYASHGETWSFALALRLAEFYLLRQRLGDAPVLLLDDVFAE 359 Query: 308 LDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 LD RR + ++A QV++++ + + ++++F V Sbjct: 360 LDSHRRAAILGAIEAAD-QVWITSAVGTELPEDL--HAQVFRV 399 >UniRef50_B8DV08 DNA replication and repair protein recF n=5 Tax=Bifidobacterium RepID=B8DV08_BIFA0 Length = 475 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 156/391 (39%), Gaps = 47/391 (12%) Query: 1 MS-LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGR 59 M ++RL + FR+ L PG N L G NG GKT+++EA+ L G + R+ Sbjct: 1 MITVSRLALDHFRSWTNCVLDFKPGVNILEGPNGLGKTNIVEALEVLSTGSSHRASTSQP 60 Query: 60 VIRHEQEAFVLHGRLQG------------EERETAIGLTKDKQGDSKVRIDGTDGHKVAE 107 ++ A + ++ ++R T LT +G ++ R+DG + + Sbjct: 61 LVEQGFPAAAIRANIEELSEDFENNTETIDDRTTTFELTIRVRGANRARVDGGPSLYMRD 120 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 + +P+ TP+ L+ G P RR+F+D G+ + KQR A L+Q Sbjct: 121 IVGRVPLVAFTPDDQRLVWGDPAVRRSFIDQAASVLVRGYTDLLQRFTHIAKQRAALLKQ 180 Query: 168 VTRYEQ--------------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP- 212 + E L W + I +++ R + ++ Sbjct: 181 IGAQEGVSVSEEARQMRMNGLEVWTAQFIETGLELTRQRMAVIGMLNEYFGTIVQELSDV 240 Query: 213 EFSLTFSFQRGWEK------------------ETEYAEVLERNFERDRQLTYTAHGPHKA 254 + + T ++ +++ + +E +R + + GP + Sbjct: 241 DQTATLVYEPSFDELYLTQGAEAGEQGGPERVKAAISEHFQRIYTGEVARGVNLIGPQRD 300 Query: 255 DLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRG 314 D+ I +G P + S G+ L AL++A L R++G R + ++DD ++LD RR Sbjct: 301 DVSIELNGMPAREYSSNGESWTLALALKMALYRLLERKAGERPIVVLDDVFAQLDPSRRA 360 Query: 315 LLASRLKATQSQVFVSAISAEHVIDMSDENS 345 + Q QV ++ +A V ++ + Sbjct: 361 KIMEF-ALRQDQVIITVAAAGDVPELPGDAH 390 >UniRef50_C1CW06 DNA replication and repair protein recF n=1 Tax=Deinococcus deserti VCD115 RepID=RECF_DEIDV Length = 363 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 87/344 (25%), Positives = 141/344 (40%), Gaps = 7/344 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L L ++RN+ L+ G + G NG+GKT++LEA Y G + ++ +++ Sbjct: 5 QLESLSTLNYRNLAPCTLSFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVT-RLEQLV 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + + L+ + + + G ++++DG + +L I PE Sbjct: 64 QSGEGEAYVRADLESGGSLSIQEVGLGR-GRRQLKVDGVRV-RAGDLPRG-SAVWIRPED 120 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L+ G P RR FLD + + R + QRNAALR + WD L Sbjct: 121 SELVFGSPSGRRNFLDALLSRLSARYAQQLARYDRTVSQRNAALRSGEEWAM-HVWDDAL 179 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + L I +R ++ A+ + L ET YA L + Sbjct: 180 VKLGSDIMLFRRRALTRLSELAAEANEALGSRKPLVLGLSESTTPET-YAHDLRSRRAEE 238 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 TA GPH+ DL + P + SRG+ + + ALR A+ E L G + + LI Sbjct: 239 LARGSTATGPHRDDLTMTLGDFPATEYASRGEGRTIALALRRAELELLAERFGEKPVLLI 298 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS 345 DDF++ELD RR L L A+ Q V+ ++ Sbjct: 299 DDFSAELDPTRRAFLLD-LAASVPQAIVTGTEQAPGAALTLRAH 341 >UniRef50_C1QCR1 RecF protein n=2 Tax=Brachyspira RepID=C1QCR1_9SPIR Length = 355 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 90/355 (25%), Positives = 157/355 (44%), Gaps = 10/355 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L IR FRN S N L G NG GKT++LEA+Y LG+G +FR+ + Sbjct: 1 MILKELTIRSFRNYNENVFEFSDKINVLYGHNGCGKTNILEAVYMLGNGVSFRTRLDREL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTK-DKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +++ + + L G + +E + ++ KV ID + +L + + P Sbjct: 61 VKNGNDNYFLRGVFREDELNYDTNIEIAYQKKVKKVFIDKKEVSSRKDLIGRILYVIFLP 120 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L+ PK RR + + + TA +LLK RN L T+ + ++ Sbjct: 121 NDTDLVIAEPKLRRDYFNMLISTISLEYLTALIKYNKLLKMRNVCL--STKPNEAYIYNS 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK---ETEYAEVLE 235 ++ L+ I+ +YS+ + M + K + + +Q E E EY + LE Sbjct: 179 DIAKLSIYIAGENKKYSSILEDKMNEIYKNIFNDENPYAIKYQSTIEDIFNENEYVKKLE 238 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 ++ T G H+A+ + + + S+G+ ++ ++LA + L+ + Sbjct: 239 STLNEQIRMRTTYFGIHRAEYQFFYKESLSKKFSSQGEKRMFTLIMKLASEKILSEYRRK 298 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 + LIDD ELD+ RR + +K QVF++ E V + EN K+F + Sbjct: 299 SPILLIDDAMLELDNTRRDNILEYIKTLG-QVFITVTEKEKVKNF--ENGKVFDI 350 >UniRef50_B9KZ04 DNA replication and repair protein recF n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=RECF_THERP Length = 396 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 158/395 (40%), Gaps = 40/395 (10%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L + +FR L L LVGANGSGKTS++EA+Y L ++FR+ + Sbjct: 1 MLVRSLELEEFRCFRHLHLVLPDRGLRLVGANGSGKTSLIEALYMLATTKSFRASLERHL 60 Query: 61 IRHEQ-------EAFVLHGRLQGEERETAIGLTKDKQ-----GDSKVRIDGTDGHKVAEL 108 + L L E + + + R DG + E Sbjct: 61 VHRSSGSELGIPPYARLAAELFTETERSTLEIVLMVDPASGTVRKLYRRDGRSL-RAVEF 119 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-- 166 + + L +PE L+ G P+ RR +LD + + A + R+L+ RN+ L+ Sbjct: 120 VGTLRVVLFSPEDLELVTGSPQQRRRYLDTILSTIDRAYLRALARYTRILEHRNSLLKSL 179 Query: 167 ----QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQ 221 Q EQL WD++L+ + R + A + D + + LT ++ Sbjct: 180 AERDQRAADEQLAYWDEQLVTYGAYLLVARLRFLAEWGPRLRDHFQALDTQAQVLTTAYL 239 Query: 222 RGWEKET--------------------EYAEVLERNFERDRQLTYTAHGPHKADLRIRAD 261 + Y E LER + + T GPH+ D+ Sbjct: 240 PSIDLPESLLSELAAREVADAQLIVGARYRETLERLRPDELRRGSTLVGPHRDDVEFLLG 299 Query: 262 GAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLK 321 P+ SRG +L + A +LA+ + R + + L+DD SELD + R L + L Sbjct: 300 EEPLTAFGSRGVQRLAVIAAKLAEIAVIHRVTDDWPVLLLDDALSELDQQHRAHLLATLS 359 Query: 322 ATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 A +Q+ ++A ++ + + +F + G++ Sbjct: 360 ALPAQLILTATESDVLETPVLSSLPLFRLNDGRLE 394 >UniRef50_Q1IXW9 DNA replication and repair protein recF n=2 Tax=Deinococcus RepID=RECF_DEIGD Length = 358 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 90/356 (25%), Positives = 145/356 (40%), Gaps = 13/356 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L+ L ++RN+ L G + G NG+GKT++LEA Y G + ++ ++I Sbjct: 5 QLSSLSTLNYRNLAPGTLHFPAGVTGVFGENGAGKTNLLEAAYLALTGLTDVT-RLEQLI 63 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + + +Q + + + G +++DG +L I PE Sbjct: 64 QSGEREAYVRADVQQGGSLSIQEVGLGR-GRRHLKVDGVRAKT-GDLPRG-SAVWIRPED 120 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKEL 181 L+ G P RRA+LD + + +R + QRNAAL+ + WD L Sbjct: 121 SELVFGPPAGRRAYLDALLSRLSARYGQQLARYERTVAQRNAALKAGEDWAM-HVWDDAL 179 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + L I +R + + Q LT + ET YA L + Sbjct: 180 VKLGTDIMLFRRRALTRLDELAREANAQLGSRKPLTLTLSESTTPET-YAHDLAARRAEE 238 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 T GPH+ DL + P + SRG+ + + ALR A+ E L + G + + LI Sbjct: 239 LSRGATVTGPHRDDLILTLGELPASEYASRGEGRTVALALRCAELELLAEKFGEKPVLLI 298 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DDF +ELD RRG L L A+ Q V+ ++ G+ T+ Sbjct: 299 DDFTAELDPGRRGFLLD-LAASVPQAIVTGTERAPGAALTLRAH------AGRFTE 347 >UniRef50_D1C3C8 DNA replication and repair protein recF n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C3C8_SPHTD Length = 412 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 149/399 (37%), Gaps = 44/399 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LT L + +FR+ + L + G N GKTS+LEA+Y L R+ R+ Sbjct: 1 MILTTLQLEEFRSYRRLSVDLPAAGLRIFGQNAGGKTSLLEAVYLLATMRSPRASSERET 60 Query: 61 IRHEQ-------EAFVLHGRLQGEERETAIGLTKDKQG------DSKVRIDGTDGHKVAE 107 I E + R++ ET + + +V++DG + + Sbjct: 61 IHWESGVELGLPPYARVAARIRHNRHETDVEVVLTVDEERGGALRKRVKLDGRP-RRAID 119 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ 167 + + L TP+ L+ G P RR +LD + + A RLL+QRN+ L++ Sbjct: 120 AVGALKVVLFTPDDLNLILGSPSVRRRYLDITLSQIDSTYLQALGQYGRLLEQRNSLLKE 179 Query: 168 ---------VTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLT 217 +Q+ WD E++ + R Y + A+ + E L Sbjct: 180 LGGRRPRDERAIEDQMAYWDAEIVTRGAYLLAQRLRYVHEVDRVAAEEFRALARTEDRLG 239 Query: 218 FSFQRGWEKETEYAEV--------------------LERNFERDRQLTYTAHGPHKADLR 257 + E L R + + T GPH+ DL Sbjct: 240 LRYSTTVTLPDALRERVVESTLADAQAFVARALESDLHRLRPDELRRGVTLVGPHRDDLH 299 Query: 258 IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLA 317 G + SRGQ +L + A +LA+ + +G R + L+DD SELD E + L Sbjct: 300 FLLGGHELSAYGSRGQQRLAVVATKLAELRQVVASTGERPVLLLDDVLSELDPEHQERLL 359 Query: 318 SRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + L + Q+ ++A + + + G + Sbjct: 360 AVLGSAGCQILITATDRALLDQPALAALPLVEARNGTLV 398 >UniRef50_Q28WH8 DNA replication and repair protein recF n=19 Tax=Rhodobacterales RepID=Q28WH8_JANSC Length = 375 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 151/354 (42%), Gaps = 6/354 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 ++ L + FR+ A + L L G NG+GKT+++EA+ L GR R +I Sbjct: 15 FVSSLALSHFRSHRRARMELDGRPVALFGPNGAGKTNLMEAVSLLSPGRGLRRAAAEEII 74 Query: 62 RH-EQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R E + + + G I LT + ++DG ++A LA L+ + + P Sbjct: 75 RRPEAIGWKVSAEISGPSINHDITLTAEPGQPRTTQVDGKTAPQIA-LARLLRIVWLVPS 133 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 L + G + RR FLD P A ++ +++RN LR R + Sbjct: 134 QDRLWSEGAEGRRRFLDRITLSFLPDHADAVLTYEKAMRERNRLLRDDARDPAWYRALEA 193 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 ++ A +I R + I+A + P L + + ++ + E + Sbjct: 194 QMADAAVRIVNGRDDALTRISA-AQNGAATAFPAADLGIETEHPCQTVDDFIQAFEGSRP 252 Query: 240 RDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCL 298 RD T GPH+AD+ I D S G+ K L+ +L L+ L E+G L Sbjct: 253 RDLAAGRTLIGPHRADMSAIYRDKGVPAKQCSTGEQKALLISLILSNARALKAETGTAPL 312 Query: 299 YLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L+D+ A+ LD RR L + A ++Q +++ E ++ + ++ F + + Sbjct: 313 VLLDEVAAHLDAGRRAALFDEICALEAQAWMTGTGPELFAEL-GDRAQHFEITE 365 >UniRef50_Q2N8V1 DNA replication and repair protein recF n=3 Tax=Erythrobacter RepID=Q2N8V1_ERYLH Length = 361 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 91/364 (25%), Positives = 154/364 (42%), Gaps = 13/364 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L R+ + + RN L + FN LVG NG+GKT+VLEAI L GR R + + Sbjct: 1 MALDRITLSNLRNHAETRLQGTARFNLLVGENGAGKTNVLEAISLLAPGRGLRRAALPDI 60 Query: 61 IRH-EQEAFVLHGRLQGEERETAIGLTK----DKQGDSKVRIDGTDGHKVAELAHLMPMQ 115 R F + L + + L + G +VR++G + V+ L + + Sbjct: 61 ARAGGGGGFTVGASLTPGDGGEPVQLGTMVDPARPGRRRVRVNGAEASAVS-LGEWLAIG 119 Query: 116 LITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--Q 173 +TP + G RR F+D +P S + +L++RN L + Sbjct: 120 WLTPAMDGIFMGPAGDRRRFVDRMALALDPLHARHASRYENVLRERNRLLGDEREPDPTW 179 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEV 233 L + ++ ++ RA + +A + L + +E+E Sbjct: 180 LDGIEAQMAKHGSALAQSRARLVGVLVETLASHPDEPFARPLLAILTESPFEEEA-LRVA 238 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAP-VEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L N RDR+ T GPH+ DL + G + S G+ K ++ A+ LA GE Sbjct: 239 LRANRGRDRRAGRTLIGPHRDDLTVTMAGKDTPAASCSTGEQKAMLIAITLAHGEL--AA 296 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 GR + L+D+ A+ +D RR L RL+ T +QV+++ + + ++ V Sbjct: 297 RGRPGVMLLDEVAAHIDPVRREALFERLRETGAQVWMTGTELAPF-AAIEAEAAVWRVSG 355 Query: 353 GKIT 356 G + Sbjct: 356 GSLE 359 >UniRef50_B6YRR8 DNA replication and repair protein recF n=12 Tax=Bacteroidales RepID=RECF_AZOPC Length = 366 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 84/364 (23%), Positives = 156/364 (42%), Gaps = 7/364 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I +F+NIE L+ SP N+L+G NG GKT++L+A+Y L + +L ++ Sbjct: 1 MIIEIVTILNFKNIEEGSLSFSPKINYLLGDNGMGKTNLLDALYYLAFTKNHTNLTDSQL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I + ++ VLH + ++ I + + + + K++E L+P +++P Sbjct: 61 INYNKDFAVLHAFYKDKDNIEEIYCGIKLKQRKIFKRNKKEYKKLSEHIGLIPTVMVSPN 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY---EQLRPW 177 ++ G RR F D + + + L+QRN LR E+ W Sbjct: 121 DTNMIQFGSNERRKFADMLISQYDKEYLRTLIYYNQALQQRNFLLRNALPSLSGEEFEIW 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN 237 ++++ E I R ++ + + + E+L Sbjct: 181 EEQMGTTGEIIYQKRKNFTTDFLPLFKEYYYTISDKNETIDLEYVSHLDDHSLFELLYEK 240 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 ERD+ L +T+ G HK D + + S+GQ K + AL+LAQ FL ++ Sbjct: 241 RERDKILGFTSTGIHKDDFNFLLNNFLIRKIGSQGQNKTYLIALKLAQFSFLVQKGLSIP 300 Query: 298 LYLIDDFASELDDERRGLLASRLKATQ-SQVFVSAI---SAEHVIDMSDENSKMFTVEKG 353 + L+DD +LD +R + L Q+F++ ++++ K+F V G Sbjct: 301 ILLLDDLFDKLDAKRVEKIIRLLAQKTFGQIFITDTNRKHLDNILTKMQHAYKLFYVSNG 360 Query: 354 KITD 357 I + Sbjct: 361 TIRE 364 >UniRef50_B0VFV3 Putative putative DNA repair and genetic recombination (RecF-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFV3_9BACT Length = 358 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 148/338 (43%), Gaps = 9/338 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M+L ++ + +FR+ + +P ++G NG GKT++LEAI G++ R + Sbjct: 1 MNLAKIELENFRSYRQNEFDFNPQGCLIIGPNGCGKTNLLEAIAYCSIGKSIRFHHDEEL 60 Query: 61 IRHEQEAFVLHGRLQGEERE-TAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 + + F + +++ + L+ ++ID +++ L ++ + P Sbjct: 61 LNFGGQFFRVQSLFISDQQTPKKVSLS-YADQHKLLKIDELPIRQLSSLFEVVKVIYCAP 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 E L++G P++RR + D P + + +++QRNA L++ ++ W+ Sbjct: 120 EDHLLISGSPRFRRQYFDLAISQLYPPYINVLRHFLHIVQQRNAMLKRNYSRAEITSWNL 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE-----KETEYAEV 233 ++ +R Y + +T K P +++ ++ + E + Sbjct: 180 SFASSLAEVWNYRNRYLKQVNTAFQETFKDIFPASTAISLAYIPSLKLPLESSPEEIIKH 239 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRES 293 L ER++ L + G H D + G + S+GQ ++ + L+L Q + + + Sbjct: 240 LATIEEREKLLQRSLVGAHLDDYEFKLKGRKMLTYASQGQKRIAVIILKLIQARLIEKVT 299 Query: 294 GRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSA 331 G + + L DD +ELD + + + + QVF+++ Sbjct: 300 GIKPIMLFDDIFAELDTFHSQQIRNCINN-RYQVFIAS 336 >UniRef50_C7NC99 DNA replication and repair protein recF n=4 Tax=Fusobacteriaceae RepID=C7NC99_LEPBD Length = 362 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 82/366 (22%), Positives = 164/366 (44%), Gaps = 18/366 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L ++ +FR + L FN + G NG GKTS++EA++ L G++FR+ ++ + Sbjct: 1 MYLDQISFNNFRCLVDGKLKFDRYFNLIYGKNGQGKTSLIEAVHFLATGKSFRTKKVKEI 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ ++ G+ + ++ I + ID +K L+ + PE Sbjct: 61 RKYNLNRLIVFGKYRHKDLSENIIAIDVNEDKKDFYIDREK-NKYINYVGLLNIISFIPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLR-PWDK 179 L+ G P RR F ++ + + + N +++LK RN +++ E++ +++ Sbjct: 120 DIELIIGNPGIRRNFFNYEISQAKKEYLQSIVNFEKILKVRNKLIKEKKTGEEIYKIYNE 179 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQ-RGWEKETEYAEVLERN 237 + I I R E+ ++ + ++ E L + + E + E L+ Sbjct: 180 KFIEEGLNIVLNRREFIKKLSILLNLNYRKLFDENSELKLKYDCFLGDVEKKTREELKEK 239 Query: 238 FE--------RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 FE R++ L Y+ GP K D +G + S+G+ K ++ +L++++ + L Sbjct: 240 FEILCRRKSEREKFLGYSLLGPQKDDFVFELNGKNAKAYSSQGEKKSIIFSLKISEIDIL 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 +E ++++DD AS D+ R+ + S + Q F+++ K F Sbjct: 300 IKEKKEYPIFIMDDIASYFDEVRKKSILSYFVNKKIQCFITSTED------LGIEGKKFI 353 Query: 350 VEKGKI 355 VEKGKI Sbjct: 354 VEKGKI 359 >UniRef50_Q2YPM3 DNA replication and repair protein recF n=50 Tax=Alphaproteobacteria RepID=RECF_BRUA2 Length = 384 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 93/369 (25%), Positives = 144/369 (39%), Gaps = 17/369 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + +FRN L L PG L G NGSGKT+++EAI L GR R V R Sbjct: 16 IRRLKLVNFRNYAELSLPLGPGHVVLTGENGSGKTNLIEAISFLSPGRGLRRAAYDDVAR 75 Query: 63 HEQEA-FVLHGRLQ---GEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 E F +H L + E G +G KVRI+ +L + + Sbjct: 76 ANAEGGFAIHAALDCMIYGDAEIGTGTAGGGEGGRKVRINRIAA-SADDLLDYARILWVV 134 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPW 177 P L GG RR FLD + + ++ ++ RN L + + L Sbjct: 135 PSMDGLFTGGASDRRRFLDRMVLAIDTAHGKRVLDYEKAMRSRNRLLNDGSNDDQWLDAI 194 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQ---------FLPEFSLTFSFQRGWEKET 228 + ++ L I+ RA+ IAA + + + + E Sbjct: 195 ENQMAELGTAIAAARAQAMRLIAAMIERLPAEGPFPKADCFLEGALESRIGVEAALDLEE 254 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGE 287 ++ L RDR T GPH+ DL ++ + S G+ K L+ L LA Sbjct: 255 DFRRTLRDGRARDRAAGRTLDGPHRTDLIVQHRPKSMPAALCSTGEQKALLIGLILAHAR 314 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 SG + L+D+ A+ LD RR L L Q F++ ++ +++ Sbjct: 315 LTAELSGMAPILLLDEIAAHLDMGRRAALFGILDELGGQAFMTGTDRALFDALAG-DAQF 373 Query: 348 FTVEKGKIT 356 F V G++T Sbjct: 374 FNVSAGQLT 382 >UniRef50_D2RCN7 DNA replication and repair protein RecF n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RCN7_GARVA Length = 433 Score = 253 bits (646), Expect = 8e-66, Method: Composition-based stats. Identities = 78/405 (19%), Positives = 155/405 (38%), Gaps = 50/405 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++R+ + FR+ +PG N + G NG GKT+++EA+ G G + R+ + Sbjct: 1 MYISRIALDTFRSWNHIICDFNPGINVIYGNNGLGKTNIVEALEVTGTGISHRTSSTLPL 60 Query: 61 IRHEQEAFVLH----------------------GRLQGEERETAIGLTKDKQGDSKVRID 98 I+ E ++ L+ +T + +G ++ I+ Sbjct: 61 IKKGYEKSIIRINTINNDINYKKDETNTGLSNIASLESNLNQTTYEIDLYVKGSNRAHIN 120 Query: 99 GTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLL 158 V ++ L+P+ TP L+ G P RR F+D P + K + Sbjct: 121 SGKALYVKDIVGLLPIVSFTPRDQFLIIGDPNVRRTFIDQAGSLLIPNYVQLLQEFKHIS 180 Query: 159 KQRNAALRQVTRYEQ---------LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQ 209 KQR A L+ + + L W + I ++ R E I + K Sbjct: 181 KQRAALLKNIRDFSYKNQTVSLSGLEIWTGKFIESGINLTKARQETVQIINKYFKNIIKS 240 Query: 210 FLPEFSLTFSFQRGWEK-----------------ETEYAEVLERNFERDRQLTYTAHGPH 252 F E + + +E+ ++ +E +R ++ + GPH Sbjct: 241 FTNEENTEIIYVPSFEEVLFEKKSDENIEDKNELFSKISEHFQRIYDGELARGCNLIGPH 300 Query: 253 KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDER 312 + D+ + +D S G+ + A ++A + L ++ + + ++DD ++LD+ R Sbjct: 301 RDDIDFAINNISAKDFASNGESWTIAIASKMALCKALEEKNNDKPIVILDDVFAQLDENR 360 Query: 313 RGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 R + + Q QVF++ S + + + GK+ + Sbjct: 361 RIRILNFALN-QGQVFITTSSLSDIPNKEYIKKTNL-INIGKLLE 403 >UniRef50_UPI00016B2627 DNA replication and repair protein RecF n=1 Tax=candidate division TM7 single-cell isolate TM7c RepID=UPI00016B2627 Length = 347 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 88/338 (26%), Positives = 162/338 (47%), Gaps = 8/338 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L +R+ R+ E ++ ++G NGSGKT++LEA+Y G +FR + Sbjct: 1 MDITHLEVRNLRSHELESRDITERVTVIIGKNGSGKTTLLEALYIALRGTSFRGS-DNDI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++H+++ + +H +R A + + K+ ID ++ +P+ L P+ Sbjct: 60 LQHDKDWWRIHVSTTNGDRSIAYDNSGENSPRKKILIDERKFQRMPS-NKKIPVVLFEPD 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDK 179 +L+G P RR F+D H P + T +R LKQRN L+Q + WD Sbjct: 119 DLRVLHGSPSRRRNFIDTFIMHINPHYGTIIRKYERALKQRNTLLKQENASRSNIFAWDM 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE---FSLTFSFQRGWEKETEYAEVLER 236 + +I + R + I ++ T + L +S + + A +L Sbjct: 179 AMAQYGAEIISQRVMIISKINQELTKTYQSIAGNNDTVDLHYSHTLIDNIQQKLANMLYA 238 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 +FERD+ L +T+ GPH+ D+ +G SRG+++ ++ AL+ + + +G Sbjct: 239 SFERDKILGFTSVGPHRHDVMFEFNGQIAAKVASRGEVRSIILALKFIEVDITQEATGLS 298 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 + L+DD +ELD+ R+ LA K +Q+F+++ +A Sbjct: 299 PVILLDDVFAELDETRQRRLAE--KCRDNQMFITSTNA 334 >UniRef50_B2S0E1 DNA replication and repair protein RecF n=1 Tax=Borrelia hermsii DAH RepID=B2S0E1_BORHD Length = 355 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 76/357 (21%), Positives = 140/357 (39%), Gaps = 7/357 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + ++ +F+NI+ + + G NGSGKT++L+AIY L +F +I Sbjct: 2 IKKIEFFNFKNIKNQVINFDFNNIYFYGENGSGKTNILDAIYCLAFASSFLVNTDRELIT 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + + F L + E++ I L+ + G +++++ + +L +P + + Sbjct: 62 YGKTEFYLKCFYKTREKDAEISLSF-RNGKKEIKVNNSLIKDRKDLILNIPAIVFSNYDT 120 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G P +R F D + + +R+LKQRN L+Q R + L+ +++ + Sbjct: 121 DFIIGEPAKKRWFFDQAISLVSLSYLDSLRKYRRILKQRNLILKQGNR-DLLKVYNEAFV 179 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE--KETEYAEVLERNFE 239 A +I R + ++L + E+ +L + Sbjct: 180 DYALEIIRMRENFIKHFYEFFKYYYSLIFDVSYNLEIKYLPSVAYCGRDEFLHLLFLKEK 239 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 + T GPH+ I + S G+ + L RL Q + G + Sbjct: 240 DEFLNESTLIGPHRDLYEILSGERVFTHHSSTGETRALALIYRLVQVIIFNKRFGIAPIL 299 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 L DD ELD RR + L SQ F + + E N ++ V+ GKI Sbjct: 300 LFDDVFLELDSTRRKRVFDIL-PKDSQCFFTFVD-ECYDIKQKSNFIVYKVKNGKIE 354 >UniRef50_C6XRU4 DNA replication and repair protein RecF n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRU4_HIRBI Length = 396 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 156/374 (41%), Gaps = 23/374 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + +FRN + L + L GANG+GKT++LEA+ LG G+ R+ + ++R Sbjct: 22 IQRLALHNFRNHASTVLEMDARPVCLFGANGAGKTNLLEAVSMLGPGKGLRAASLPSLVR 81 Query: 63 HEQEA-----FVLHGRLQGE--ERETAIGLTKDKQGDSK--VRIDGTDGHKVAELAHLMP 113 E + + R+ +R+ ++GL G ++ ++D LA L+ Sbjct: 82 VEAGESVVGGWAISARMDDAGLDRQISVGLDVSPDGRTRRVAKLDDAPV-SQTNLAELVR 140 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYE 172 + +TP + G RR F D + P +A + ++ +++RNA Q Sbjct: 141 VVWLTPAMDRVFAGPAGDRRKFYDRQVLAHVPAHGSASAAYEKAMRERNALFEQGRMDAS 200 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT---------FSFQRG 223 L + L I+ RA I A + + P+ L+ Sbjct: 201 WLDALEARLAEAGAAIAVNRATALKRIQAAIDARPEGHFPKADLSIAGKFEAMALQGDSQ 260 Query: 224 WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALR 282 E ++ L+ RD T G H++DL++ + S G+ K L+ + Sbjct: 261 AAIEGAISDSLKVGRARDSVAGRTLAGVHRSDLQVVHRPKQLPAAQCSTGEQKALLMGMI 320 Query: 283 LAQGE-FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 LA + L + L L+D+ A+ LD RR L L A Q +++ A + D Sbjct: 321 LANAKALLEGDFAPNPLLLLDEAAAHLDSVRRAALYDELAALGGQAWLTGTDA-ALFDAF 379 Query: 342 DENSKMFTVEKGKI 355 + ++ F VE G++ Sbjct: 380 GDRAQRFCVENGQV 393 >UniRef50_B8DYH4 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B8DYH4_DICTD Length = 340 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 77/339 (22%), Positives = 143/339 (42%), Gaps = 22/339 (6%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + +R+FRN G N + G NGSGKTS+LEA+ L + R+FR + ++ Sbjct: 6 MVIESIYLRNFRNFSDFKTNFKDGINVIYGPNGSGKTSILEAVAYLSNPRSFRGARDHQL 65 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQ---GDSKVRIDGTDGHKVAELAHLMPMQLI 117 I+ ++ F ++G++ I ++ + +DG + ++ + Sbjct: 66 IKLGEKFFEINGKILSGNESHEITISYHHDEIKKEKIAYLDGFKVKRFRDIQEIFIAIPF 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 + + + +++G RR F D + ++ N ++LL +RN L++ + + Sbjct: 126 SFKDYAMIDGYATQRRDFFDDIFSLLDLEYYEILRNYEKLLDERNDLLKEENIDRDYVIY 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLER 236 KE+ PLAE+I R ++ + P F + + + + +Y E Sbjct: 186 LAKEMQPLAEKIVEKRETMIKELSKYLD-------PMFKVEYISEFKGKNIVDYIE---- 234 Query: 237 NFERDRQLTYTAHGPH-KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 D T GPH D G P + S GQ +LL +L LA + + Sbjct: 235 ---EDIARGITTVGPHVHDDYTFYYKGNPAKYFASEGQKRLLYLSLVLAFRKLIEETKLY 291 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA 334 ++L DD + LD LL + QV ++++S Sbjct: 292 EPVFLFDDPVNVLDPH---LLEKFISHLSGQVIIASLSP 327 >UniRef50_A1QZM4 DNA replication and repair protein RecF n=3 Tax=Borrelia RepID=A1QZM4_BORT9 Length = 358 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 75/355 (21%), Positives = 142/355 (40%), Gaps = 7/355 (1%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + ++ +F+NIE + + G NGSGKT++L+AIY L +F +I Sbjct: 5 IKKVEFFNFKNIENRVINFDFNNIYFCGENGSGKTNILDAIYCLAFASSFLVRTDRELIT 64 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + + F L E + IGL+ + G +++++ + L +P + + Sbjct: 65 YGKTEFYLKCFYNTEGKAGEIGLSL-RNGKKEIKVNNSIVKDRKNLILNIPSVIFSNYDT 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G P +R F D + + +++L+QRN LRQ + + L+ +++ + Sbjct: 124 DFIIGAPAKKRWFFDQAISLVSLSYLDSLRKYRKILQQRNLILRQGNK-DLLKVYNETFV 182 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWE--KETEYAEVLERNFE 239 A +I+ R + +SL + + K E+ + L + Sbjct: 183 DFAFEITKMRENFIKHFYEFFKYYYSFIFDVSYSLEIKYLPSVKCSKRDEFLQTLLLKEQ 242 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 + T GPH+ I + S GQ++ L RL Q ++ G + Sbjct: 243 DELYSESTLIGPHRDLYEILSGERVFTHHSSTGQIRALALIYRLIQVIMFNKQFGIAPIL 302 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 L DD ELD RR + L SQ F + + + D ++ ++ G+ Sbjct: 303 LFDDVFLELDSMRRKRIFDIL-PKDSQCFFTFLD-DCYDIKQDSKFIVYRIKNGR 355 >UniRef50_Q114T6 DNA replication and repair protein recF n=32 Tax=Cyanobacteria RepID=RECF_TRIEI Length = 390 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 77/386 (19%), Positives = 154/386 (39%), Gaps = 31/386 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L +R FRN + L+G N GK+++LE++ L ++ R+++ + Sbjct: 1 MYLKHLHLRQFRNYRDQQVKFDGAKTILLGDNAQGKSNLLESVELLSTLKSHRAIRDRDL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I ++A + L+ + + LT QG V ++G + + ++ + + Sbjct: 61 ILDSKQASKIQASLERQLGNIDLALTLRSQGKRTVAVNGETISRHLDFLSILNVVHFSSL 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY--------- 171 L+ GGP+ RR +LD EP + ++L+QRNA L+++ + Sbjct: 121 DLDLVRGGPEVRRYWLDRLLVQLEPVYAHILLQYNQVLRQRNALLKKIRQQKMAAETTGS 180 Query: 172 ------EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL--------- 216 ++L WD +L ++ R +A + + Sbjct: 181 SPSILTQELALWDAQLATTGSRVIRRRQRLLQKLAPLAGEWHCAISGSMEVFKMEYLANV 240 Query: 217 -----TFSFQRGWE-KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLS 270 Q E + E ++ ++ T GPH+ D+ + P S Sbjct: 241 IVDSNELIIQDSLEGVRQAFLEKIKVRAIAEQYQGTTVVGPHRDDVIFTINDTPARQYGS 300 Query: 271 RGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVS 330 +GQ + L+ AL+LA+ + + L L+DD +ELD R+ L + + Q ++ Sbjct: 301 QGQQRTLVLALKLAELQLIEEVVQEPPLLLLDDVLAELDLHRQNQLLEAISN-RFQTLIT 359 Query: 331 AISAEHVIDMSDENSKMFTVEKGKIT 356 +++++ +V+ G I+ Sbjct: 360 TTHLGCFDGQWLQDTQILSVKSGNIS 385 >UniRef50_Q5FUT9 DNA replication and repair protein recF n=1 Tax=Gluconobacter oxydans RepID=Q5FUT9_GLUOX Length = 367 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 93/367 (25%), Positives = 144/367 (39%), Gaps = 13/367 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M LTRL + DFRN L G NGSGKT++LEA+ L GR R + + Sbjct: 1 MKLTRLALTDFRNYTHTVWTPEASILVLTGENGSGKTNLLEAVSLLAPGRGLRGAALPAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLT--KDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 R E + + LQ E IG ++ R+DG + A + +T Sbjct: 61 CRQGAERWGVAATLQSGLDEFRIGTGSDLSEKQRRTFRLDGENIRSQALIGQRFSCVWLT 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRPW 177 P+ L G RR FLD P + R + RN L + E L Sbjct: 121 PQMDRLFQEGSSGRRRFLDRLVMALSPDHGRQIAAHDRSVVTRNRVLSERPNEAEWLTSI 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAAD------MADTCKQFLPEFSLTFSFQRGWEKETEYA 231 + + A S R + A + + S + Q E E Sbjct: 181 EDSIARHAVAASAARLALIESMNAHPFENDGFSASTLHLDCAISSRLTTQPALEVEDWIR 240 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRI--RADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 L + DRQ + T+ G H+AD + A G P + S GQ K+++ L+ + Sbjct: 241 NSLRQARTEDRQRSTTSVGAHRADFMLSDTATGRPA-ELSSSGQQKVMLTGTILSHARLM 299 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 T+E G L+D+ LD+ RR L L+ ++ V ++ AE ++ ++ F+ Sbjct: 300 TQERGYAPAILLDEPLLHLDEMRRHALLDSLEGLRAPVLITGTDAEAFAPIAGR-AQFFS 358 Query: 350 VEKGKIT 356 + G I+ Sbjct: 359 IRNGTIS 365 >UniRef50_C1XG19 DNA replication and repair protein recF n=2 Tax=Meiothermus RepID=C1XG19_MEIRU Length = 357 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 160/364 (43%), Gaps = 21/364 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL ++FRN+ T A PG +VG N GKT++LEAI G R+ + Sbjct: 1 MRLLRLRQKNFRNLFTPVFAPGPGLTTVVGGNAQGKTNLLEAIELALGGE-LRNG-LAER 58 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I Q LH ++ + + + + ++G + R++ + ELA L L+ P+ Sbjct: 59 IAFGQGEAWLHAEIETQFGNSRLEVKLSREG-REHRLNEAPA-SLRELAQLPGAVLLGPD 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------------ 168 L+ G P+ RR FLD + + S R L+QRNA L+ Sbjct: 117 DLELVLGPPEERRRFLDVLLSRFSARYRSMLSQYNRALQQRNAVLKSGFRPTSRGQGEGA 176 Query: 169 --TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEK 226 + + W+ EL+ +I + R A + + ++ P L + Sbjct: 177 PSSTRASIGIWNHELVKYGSEILSLRRRMLAKLTPLAREAYRELAPG-ELNLELSETTD- 234 Query: 227 ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQG 286 + + LE N + D Q T+ GPH+ DL I +G SRG+ + + ALRLA+ Sbjct: 235 PDRFLQTLEDNLQDDLQRGATSVGPHRDDLVILLEGREAARFGSRGECRSIALALRLAEH 294 Query: 287 EFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 L + L L+D++ SELD+ RRG L + ++ Q ++ + + + + Sbjct: 295 RLLWQHYEEAPLLLVDEWHSELDNRRRGALLAYAQSLP-QAILAGLETPGTGAVIEIEAG 353 Query: 347 MFTV 350 +++V Sbjct: 354 VWSV 357 >UniRef50_A0L3I9 DNA replication and repair protein recF n=1 Tax=Magnetococcus sp. MC-1 RepID=RECF_MAGSM Length = 382 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 102/377 (27%), Positives = 167/377 (44%), Gaps = 22/377 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L RL +RDFRNI A+L PG N + G NG GK+++LEAI L GR+FR + Sbjct: 1 MQLDRLTLRDFRNITEAELRFGPGLNLITGPNGHGKSNLLEAIGLLATGRSFRRAPAAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R+ Q F L G + + + G V+I+G + L + ++TP+ Sbjct: 61 RRYGQPWFHLRGETTARDLGHRLEF-FGQAGRQAVKINGKSASAASALGQALAAVIVTPD 119 Query: 121 GFTLLNGGPKYRRAFLDWGCF-----HNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QL 174 L+ GP RR F+DW F + ++ LK RN L+ + Sbjct: 120 TLRLVQDGPGVRRGFVDWVAFTCGRQQGALSHAVVAGDYQKALKARNRLLKLPRVEAGEW 179 Query: 175 RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE------- 227 W+ +L L +++ R + + + + LT + ++ Sbjct: 180 LAWESQLATLGAKMARNRYQVLQRLQPHLDRMLEDLGMAQRLTITLSCQLDRHGTHWAED 239 Query: 228 -----TEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 + Y +L N +R+ TA GPH+ DL +R DG + S+GQ K AL+ Sbjct: 240 ESAAASLYRRLLAENRASERRSGGTAIGPHRDDLVLRLDGHALAQFGSQGQQKRAALALK 299 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA+ + L + G L+++DD A+ELD + L L Q+FV++ A+ + Sbjct: 300 LAEAQLLQEQLGEWPLFVLDDPAAELDTDGMSRLMGLLARCGGQIFVASCRAQTIPWSGL 359 Query: 343 ENSKMFTVEKG--KITD 357 + F V++G +T+ Sbjct: 360 A-PQRFYVDQGVFALTE 375 >UniRef50_A7BAS2 DNA replication and repair protein recF n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BAS2_9ACTO Length = 398 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 158/398 (39%), Gaps = 46/398 (11%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + + L G LVGANG GKT+++EA+ L + R G + Sbjct: 1 MRVSHLALDDFRSWKHGVVELPEGPTVLVGANGQGKTNLVEALAYLSTFSSHRVGAEGAL 60 Query: 61 IRHEQEAFV-------LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMP 113 +R + + R+ RE I L + ++ RI+ K E+ ++ Sbjct: 61 VRIPIDEAEAAPGGAVIRARVVTFGREQVIELEIVRGKANRARINRAQV-KPREILGIVR 119 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR------- 166 + PE +L+ G P RR+FLD P + S+ R+ +QR A ++ Sbjct: 120 TVVFAPEDLSLVRGDPSVRRSFLDDLATQLSPIHASVRSDFDRVARQRAALMKAAQASLR 179 Query: 167 --QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRG 223 Q L WD++ L+ +I+ RA + + A + L +F Sbjct: 180 RGQSPDLSTLEIWDQQFAALSARITATRASIVSRLEEPAARSYDDVADSPRHLHLAFDAS 239 Query: 224 WEK--------------------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGA 263 ++ L E++ + G H+ DL + Sbjct: 240 VDRVIGTDPDNPASADLTDVDAQTERMLAALASVREKETERGVNLAGAHRDDLALSLGAM 299 Query: 264 PVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKAT 323 PV+ S G+ + ALRL E L+ G + ++DD +ELD RR LA L + Sbjct: 300 PVKGYASHGESWSVALALRLGAFELLSD-DGDTPILILDDVFAELDSSRREGLA-ALASK 357 Query: 324 QSQVFVSAISAEHVIDMSDENSKMFTV----EKGKITD 357 Q+ V+ A + D ++ V E+G + D Sbjct: 358 AEQIIVTCAVAGDLPASLDHHA--LHVRLDPERGTVID 393 >UniRef50_Q73R61 DNA replication and repair protein recF n=1 Tax=Treponema denticola RepID=Q73R61_TREDE Length = 360 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 6/359 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +FRN+E A + +S FLVG NG GKT+ LEA+Y +G +FR+ + ++ Sbjct: 1 MPFLSASFYNFRNLENATVDISSPEVFLVGKNGQGKTNFLEALYVSSYGTSFRTRSLAQI 60 Query: 61 IRHEQEAFVLHGRL-QGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 +++ F + + + I + + ++ + EL +P L Sbjct: 61 CTKDEKEFSIRALYKESDNISHTISIII-QDKKKDIQKNFKKIKNSKELISTIPCILFHG 119 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + G P +R F+D F + LK RN L Q + L D+ Sbjct: 120 DDIEFAVGTPSRKRFFIDQSVSLCNSDFIEVLVKYSKALKSRNVILEQ-KKASLLDSIDE 178 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--WEKETEYAEVLERN 237 LA I+ R A + ++ + ++ E E + +L Sbjct: 179 IFASLALLITNERKNIVEEYAKHFSLIYEEISGVSGVEMVYRPSVKVESEEDLLILLAEK 238 Query: 238 FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 + D ++ GPH+ + D P + S GQ +L+ LR+ Q + + ++GR+ Sbjct: 239 RQNDLIDRTSSTGPHRDRIHFIKDKKPFTERASNGQRRLISLVLRMIQAKIYSEKTGRKP 298 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 ++L+DD ELD E+R L + Q+F + + E + EN+K+F VE GK + Sbjct: 299 IFLMDDILLELDPEKRQKFMELLPPYE-QLFCTFLPGEPYKNYQKENTKIFFVEDGKFS 356 >UniRef50_Q2W9N3 DNA replication and repair protein recF n=5 Tax=Alphaproteobacteria RepID=Q2W9N3_MAGSA Length = 394 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 145/372 (38%), Gaps = 21/372 (5%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL + DFR T L L GANG+GKT++LEA+ L GR R + R Sbjct: 17 VRRLTLADFRCYRTLRLETDSRPVVLTGANGAGKTNILEALSFLVPGRGLRRAGAADITR 76 Query: 63 HE---QEAFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLIT 118 H + + L G IG ++ + + VRIDG K +LA L+ +T Sbjct: 77 HGLAAGSPWAVAATLDGPAGRVEIGTGREAGHERRSVRIDGKPA-KPGDLAGLVSALWLT 135 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY------E 172 P L G RR FLD F PG + +++R LR Sbjct: 136 PAMDRLFIEGASGRRRFLDRLVFGLVPGHGAEAGAYEHAMRERTRLLRAARDGGPRVDPA 195 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGW-------- 224 + ++ + +++ R E + F GW Sbjct: 196 WMAALEEGMARHGTRVALARVESIRRLDEACRAGLGPFPAAGLAVEGEIEGWLAGGLSPD 255 Query: 225 EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRL 283 E E + L RD GPH++DL +R + S G+ K ++ ++ L Sbjct: 256 EAEERFRGALRVARARDEAAGAATMGPHRSDLMVRHVPKDLPAGQCSTGEQKAVLVSIVL 315 Query: 284 AQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 AQG + GR L L+D+ A+ LD+ RR L L A ++Q +++ A + E Sbjct: 316 AQGRVQDQSGGRAPLLLLDEVAAHLDEVRRAALFDELCALKAQSWMTGTDA-MLFAGFGE 374 Query: 344 NSKMFTVEKGKI 355 ++ F V + Sbjct: 375 RAQFFRVTDATV 386 >UniRef50_C1A6J7 DNA replication and repair protein recF n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6J7_GEMAT Length = 376 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 83/376 (22%), Positives = 145/376 (38%), Gaps = 23/376 (6%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L +L +R++RN + DL + G ++G NG GKT++LEA+ LG R+FR + VIR Sbjct: 2 LAQLAVREYRNFHSLDLEVPTGGLVVIGENGHGKTNLLEAVAYLGLLRSFRGARDADVIR 61 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQ-GDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 AF + L + + ++ + +DG + ++ +P +P Sbjct: 62 FGAPAFHVRATLHAPAAWHTVSVGYERSSKRKRATLDGVEQPRLTSALGALPSVEFSPAD 121 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--------Q 173 L+ GP RR +LD + P + A + L +RNA L+ R + Sbjct: 122 VALVASGPGERRRYLDVMLALSSPAYLVALQGYRSALLRRNAVLKAAQRSAVRAQEQEAR 181 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR----------- 222 + W+ L I R + A A+ C + Sbjct: 182 VSVWEPALAEHGGVIVAARHAFVRAQAGYYAELCAAIGERQEALLRYVSVGGDTRSDALT 241 Query: 223 -GWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCAL 281 ++ + + + T GP + DL++ G + S GQ + AL Sbjct: 242 DPLMQQDALTRAFTQQRSAELRRGVTLVGPQRDDLQLTLGGRELRTFGSAGQQRSAAIAL 301 Query: 282 RLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQS-QVFVSAISAEHVIDM 340 RL + L G L L+DD +ELD R + L A + QV ++ + + Sbjct: 302 RLLELITLRDALGYSPLLLLDDPFAELDLGRAARVLDLLDAAGASQVLLAVPREQDIPAA 361 Query: 341 SDENSKMFTVEKGKIT 356 ++ T+ G ++ Sbjct: 362 YTRLARR-TMRDGVLS 376 >UniRef50_B5YFF1 DNA replication and repair protein RecF n=2 Tax=Dictyoglomus RepID=B5YFF1_DICT6 Length = 359 Score = 247 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 155/367 (42%), Gaps = 22/367 (5%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + +FRN++ +L N G N GKT++LE+IY L G++FR+ + Sbjct: 1 MRLIDLRVVNFRNLKNLNLNFFD-VNIFYGENAQGKTNILESIYFLFSGKSFRTKNEREI 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR +E+F L G + + + + + + K++I+ + + ++ L P+ L + E Sbjct: 60 IRWGEESFYLRGDVNWQNQNLVLESALS-ELEKKIKINQKNLKRYRDMVFLFPIILFSQE 118 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 GP RR L+ + A S + L QRN L+ W+ Sbjct: 119 EIENFKKGPSQRRYLLNRFISTLSYKYHKALSEYYKTLYQRNLTLKSGRDVS---VWNST 175 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSF-------QRGWEKETEYAEV 233 LI L I R I + + + + L + L + E + + Sbjct: 176 LIKLGSYILFQRLSIVEEIKSKVKEVSNKLLEKNFLEIEYISTVPLGDSEEEIAKNFEVM 235 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRA----DGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 L+ +++ YT GPH+ D+ +R + S G+ KL +LAQ E L Sbjct: 236 LKAKEAEEKKKGYTLVGPHRDDIVLRIIRDDIQYDLRKYGSAGEKKLGYIIWKLAQVEIL 295 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 + + + + LIDD +LD+ ++ + +K Q+F++ + + F Sbjct: 296 SEKRKEKPILLIDDLFGDLDEYKQKRVWDGIKDF--QIFLTT----PIKIEFLRDFPHFL 349 Query: 350 VEKGKIT 356 V+ G++T Sbjct: 350 VKNGEVT 356 >UniRef50_D0WL06 DNA replication and repair protein recF n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WL06_9ACTO Length = 453 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 94/398 (23%), Positives = 146/398 (36%), Gaps = 48/398 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L+ L + DFR+ E A +AL PG LVG NG GKT+++EA+ L + R + Sbjct: 1 MYLSDLALTDFRSYERAIVALKPGVTVLVGENGQGKTNLIEAVGYLSTLSSHRVSGDAAL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R A V+ R+ T + + ++ RI+ + E+ + L PE Sbjct: 61 VRQGATAAVVQARVVRSSAPTTVEVEIYSGRANRARINRGLV-RPPEIVGTVRSVLFAPE 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV---------TRY 171 L++G P RR+FLD P S R +QR A L+ Sbjct: 120 DLELVSGDPAARRSFLDRIMVQLRPRMVAVKSEYDRAARQRAALLKSAGAARRGGGSADA 179 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQR--------- 222 L WD +L L +I+ RAE A + + + + R Sbjct: 180 AALDVWDVQLAKLGARITAARAEIVARLRPRVDEFYAKVSGGRGPAEIAYRASAGRLTER 239 Query: 223 ------GWEKETEYAEVLERNFERDRQ--------------LTYTAHGPHKADLRIRADG 262 G + + E L + + GPH+ +L + Sbjct: 240 ANGAGGGPDFDEGTQEELRDVELNEIRLISAMAERREEEIRRGVNLVGPHRDELELALGT 299 Query: 263 APVEDTLSRGQLKLLMCALRLAQGEFLT-RESGRR-----CLYLIDDFASELDDERRGLL 316 P S G+ AL+LA L ESG + ++DD +ELD RR L Sbjct: 300 LPARGYASHGESWSYALALKLASWRVLCGDESGEWAEGGEPVLILDDVFAELDARRRDRL 359 Query: 317 ASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGK 354 A ++ + Q V+A + + TV G Sbjct: 360 ARIVEEAE-QAIVTAAVGSELPAELG--GRRLTVTLGN 394 >UniRef50_Q0B0Z2 DNA replication and repair protein recF n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=RECF_SYNWW Length = 365 Score = 246 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 18/367 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + I+DFRN++ + SPG N G N GKT++LEA+Y L G +FRS + + Sbjct: 1 MKILKFQIKDFRNLKKIEYQPSPGLNIFYGENAQGKTNILEALYYLATGNSFRSNKEKTL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I +E + + R +ER +T G RI+ + + L +P+ Sbjct: 61 ISYESSSLQVQARYNHQERIIDSSITYGLDG-KVFRINKKRASY--NHTDRLRIILFSPD 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ-LRPWDK 179 L+ G P RR FLD+ + N +++LK+RN L++ + + Sbjct: 118 DLYLVKGAPYKRRFFLDFLLGQISNEYLFKLDNYRKILKKRNLLLKKEETNSRSFAIIND 177 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQF---LPEFSLTFSFQRGWEKETEYAEVLER 236 + LA Q+ R + + + Q + + ++ + ++L+ Sbjct: 178 IFMDLAAQLLISRLNLINVLDEAIQEIYPQINNDGGQLKIRYALSFPVDSGKINLDILKD 237 Query: 237 NF--------ERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 + E++++ T GPH D+ I + S+GQ + ++ L+LA+ Sbjct: 238 SLKKQVESETEKEKKRKTTLLGPHLDDMHIYLNEQMARLFASQGQQRNIVICLKLAEIMT 297 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 + G ++L+D+ +ELDD R L L + Q F++++ E M ++ +F Sbjct: 298 FRKIKGFFPIFLLDEVLAELDDSRSNKLLKYLAQSPFQSFLTSVKLEKFEVM---DASIF 354 Query: 349 TVEKGKI 355 V+ G + Sbjct: 355 LVKDGCL 361 >UniRef50_Q7U4L8 DNA replication and repair protein recF n=19 Tax=cellular organisms RepID=RECF_SYNPX Length = 365 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 86/358 (24%), Positives = 145/358 (40%), Gaps = 20/358 (5%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 ++ FRN L L+ ++G NG GK+++LEA+ LG R+ R Q +I+ E Sbjct: 1 MQGFRNHRKLSLELTQPRLLVIGPNGIGKSNLLEAVELLGSLRSHRCSQDRDLIQWEAPR 60 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 +L L ++ + L +QG + R +G + +L + + L+ G Sbjct: 61 ALLRAGLDDGDQ---LELELRRQGGRQARRNGKTLDRQLDLIGPLRCIGFSALDLELVRG 117 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV------TRYEQLRPWDKEL 181 P RR +LD EP + RLL+QR+ R+ R L +D ++ Sbjct: 118 EPALRRQWLDRVVLQLEPVYADLLGRYNRLLRQRSQLWRRGAQTNPNQRDALLDAFDVQM 177 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETE---------YA 231 ++ +I R + L +Q G + E Sbjct: 178 ALVSTRIHRRRQRALRRLEPIARRWQSHLSAGSEELELHYQPGSRLDAEEAEEPWRLAIE 237 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTR 291 E L + +L GPH+ ++ ++ G P S GQ + L+ L+LA+ E +T+ Sbjct: 238 EQLRLQRPEEERLGSCRVGPHRDEVSLQLGGTPARRFGSSGQQRSLVLGLKLAELELVTQ 297 Query: 292 ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 G L L+DD +ELD R+ LL + + Q VSA E+S++ Sbjct: 298 LFGEAPLLLLDDVLAELDPTRQHLLLEAVGQ-EHQCLVSATHLSGFEGGWREHSQILK 354 >UniRef50_C8PZ54 DNA replication and repair protein RecF n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PZ54_9GAMM Length = 390 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 185/381 (48%), Gaps = 31/381 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + +L I FRN+ T +L S N +G NGSGKTS+LE+IY L G++FR Q Sbjct: 1 MQIIQLAIHHFRNLHTIELQPSS-CNVFLGQNGSGKTSLLESIYLLSRGKSFRHHQPRHY 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 I H + RL + + + K + +++R++G + LA L+P L+ P Sbjct: 60 IEHGFSDTTVFARLNHGQ---TVAIAKSQDATTQLRLNGQSLVTQSPLAQLLPTLLLEPV 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT--------RYE 172 L G + RR LDW FH E F W +RLLKQRN+ L+Q + Sbjct: 117 SLAQLEDGSQARREMLDWLGFHVEQSFHPNWLAYQRLLKQRNSLLKQNVGNVSLTSLQQH 176 Query: 173 QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE--FSLTFSFQRGWEKETEY 230 +L WD +L AE+I RA+ ++FLP+ L + G++ E Sbjct: 177 ELSAWDYQLSQHAEKIHQARADIIEQWQPHFLAQVQKFLPQYAEKLRLRYTPGFDTEAGL 236 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIRAD-------------GAPVEDTLSRGQLKLL 277 A L D +L YT G H++D+ + D D LSRG+ KLL Sbjct: 237 AITLANRLASDIELGYTRMGCHRSDINVVLDLVHTDAAGHKHKQTLLATDMLSRGEKKLL 296 Query: 278 MCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA--- 334 + ALRL+Q L + + L L+DD +ELD++ LL + LK SQ+F+++++ Sbjct: 297 VMALRLSQLPLLNQV-DKVPLVLVDDITAELDNDALMLLLTGLKQVNSQLFITSLTQDIV 355 Query: 335 EHVIDMSDENSKMFTVEKGKI 355 E + + +N K+F VE+G I Sbjct: 356 ESIQKIWQDNIKLFQVEQGSI 376 >UniRef50_C6NTD9 DNA recombination and repair protein RecF n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NTD9_9GAMM Length = 357 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 109/358 (30%), Positives = 167/358 (46%), Gaps = 6/358 (1%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L IR+ R IE LA P +N+LVGANG+GK++VLEA++ LG G+++R ++ Sbjct: 1 MPVAVLEIRNLRCIEHMQLAAGPRWNWLVGANGAGKSTVLEALHLLGLGQSWRRGP-RQL 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 IR F+L + + + G+ ++R G L L+P+Q I Sbjct: 60 IRDGSSCFLLSVLRNEDLGLNDRIVLEQNGGERQMRFAGEHLRSQWALLELLPIQAIHSG 119 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + G RR LDWG + + +RLL QRNA LR E PW+ Sbjct: 120 NSEFIAGSADDRRRQLDWGIYRRHREYGDHLRQYRRLLAQRNAWLRSQGHKED--PWEHL 177 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-SLTFSFQRGWEKETEYAEVLERNFE 239 L E + +R+ A + + K+ + Q GW +AEVL + Sbjct: 178 LAGAGELLHEYRSREIAYLQEGLCHFWKERTGSTSEIRLHLQSGWRDGMRFAEVLREDRS 237 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 D + +T GPH+A++ R DG D+LSRGQL+ L RLAQ + + + Sbjct: 238 SDAETGFTRSGPHRANILFRVDGRSAADSLSRGQLRTLGNCFRLAQLQAIKDSGLELPVV 297 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 LIDDFA+ELD R +L A QVF + A + + +T++ G++ + Sbjct: 298 LIDDFAAELDPAGRLWWRQQLDALGVQVFAAGTEAAALP--MNAEDCQWTIQAGQLRE 353 >UniRef50_C3JBV9 DNA replication and repair protein recF n=3 Tax=Bacteria RepID=C3JBV9_9PORP Length = 372 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 10/365 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L + F++I TA +P N G NG GKT++L+AI+ L R+ + Sbjct: 1 MVLEHLELVAFKSIATASCDFAPKLNCFFGGNGMGKTNLLDAIHYLSMARSHLNTVDRLA 60 Query: 61 IRHEQEAFVLHGRLQGEERETA--IGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 IR +L G + E E I L + +G +++E P+ +I+ Sbjct: 61 IRIGSTEAILSGDYRANEGEETDRIALRLRMGQAKALSRNGRLYKRLSEHIGRYPLVIIS 120 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW- 177 P+ + L+ GG RR +LD ++ + R L+QRN L+ + E L Sbjct: 121 PQDYRLIRGGSDERRNWLDRLLSQHDALYLDLLIRYDRALQQRNTLLKSDFQDEMLLSIV 180 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS--LTFSFQRGWEKETE-YAEVL 234 ++++ +I+ RAE+ ++ + S +T ++ E + + L Sbjct: 181 EEQMALTGVEIAQKRAEFVRDFTPTFNQLYQEICGDKSECVTLNYLTATAPNRELFTQDL 240 Query: 235 ERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESG 294 + +R YT +G HK DL + + S GQ K + AL+ + L + Sbjct: 241 RQRRREERATGYTTYGIHKDDLEMLLGENLMRKIGSEGQNKTFLTALKFTEYNLLANKLQ 300 Query: 295 RRCLYLIDDFASELDDERRGLLASRLK-ATQSQVFVSAISAEHVIDMSDENSKMFT---V 350 R + L+DD +LD ER + + Q+F++ + +++ D+ + + F V Sbjct: 301 CRPILLLDDLFDKLDAERVERIIGIVSRPIFGQIFITDTNRKYLDDIIEAQHESFHLYAV 360 Query: 351 EKGKI 355 + G I Sbjct: 361 DHGNI 365 >UniRef50_C6XFT6 DNA replication and repair protein recF n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFT6_LIBAP Length = 375 Score = 241 bits (616), Expect = 3e-62, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 153/365 (41%), Gaps = 15/365 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L I +FRN + L VG NG GKT++LEAI L GR FR V Sbjct: 6 KIKFLNISEFRNYASLRLVFDAQHTIFVGDNGVGKTNILEAISFLSPGRGFRRASYADVT 65 Query: 62 RHEQ-EAFVLHGRLQGEERETAIGLTKDKQGDSKVR---IDGTDGHKVAELAHLMPMQLI 117 R F R++G E I + + + D VR I+ V EL + + + Sbjct: 66 RIGSPSFFSTFARVEGMEGLADISIKLETRDDRSVRCLQINDVVIRVVDELNKHLRISWL 125 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRP 176 P + +G RR FLD F +P + +RL++ RN L + Sbjct: 126 VPSMDRIFSGLSMERRRFLDRMVFAIDPRHRRRMIDFERLMRGRNRLLTEGYFDSSWCSS 185 Query: 177 WDKELIPLAEQISTWRAEYSAGIAADMADTCKQF-LPEFSLTFSF-------QRGWEKET 228 + ++ L +I+ R E +++ + + ++ P L+ + Q + Sbjct: 186 IEAQMAELGVKINIARVEMINALSSLIMEYVQKENFPHIKLSLTGFLDGKFDQSFCALKE 245 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLRI-RADGAPVEDTLSRGQLKLLMCALRLAQGE 287 EYA+ L + D T GPH++DL + D A S G+ K+++ + LA Sbjct: 246 EYAKKLFDGRKMDSMSRRTLIGPHRSDLIVDYCDKAITIAHGSTGEQKVVLVGIFLAHAR 305 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 ++ +G + L+D+ ++ LD+++R L + SQ+F++ D +E +K Sbjct: 306 LISNTTGFAPILLLDEISAHLDEDKRNALFRIVTDIGSQIFMTGTDKSVF-DSLNETAKF 364 Query: 348 FTVEK 352 + Sbjct: 365 MRISN 369 >UniRef50_A3VNH5 DNA replication and repair protein recF n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VNH5_9PROT Length = 375 Score = 241 bits (615), Expect = 4e-62, Method: Composition-based stats. Identities = 88/362 (24%), Positives = 139/362 (38%), Gaps = 14/362 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +TRL + FR+ +A+ G NG+GKT++LEA+ +G GR R +G + Sbjct: 7 RVTRLALSSFRSYRSAEWRFEKRQTAFYGPNGAGKTNILEALSLMGPGRGLRRAALGDLT 66 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQG---DSKVRIDGTDGHKVAELAHLMPMQLIT 118 R + + E L +G V++DG L + Q +T Sbjct: 67 RQGSDGGW-GIGVDLGTGEGRRRLALRAEGVPLKRHVQVDGEPVRSTGTLLDSVRFQWLT 125 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P L P RR FLD P + L+QR AAL L P + Sbjct: 126 PAQDRLFTDSPGERRRFLDRMVLARCPSHGRDTLTFENALRQRQAALEAGWPPAILEPLE 185 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG--------WEKETEY 230 ++ I R + A + + + P L+ S + Y Sbjct: 186 AQMAEAGIAIDEARRQTLAALQVNYERVQETAFPRAGLSLSGPFEDIAGIPTLAARRESY 245 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 A++LER RDR+ T GPH++DL + S G+ K L+ L LA Sbjct: 246 ADLLERGRRRDREAGRTLLGPHRSDLEVVHLGKDQPARLCSTGEQKALLIGLVLAHATAS 305 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 + + L+D+ A+ LD++RR LA+ L VF++ + D + Sbjct: 306 LAATQAPLVLLLDEVAAHLDEDRRAALAAMLDQLAICVFMTGTDR-ALFDAWGDRVDRLH 364 Query: 350 VE 351 V+ Sbjct: 365 VD 366 >UniRef50_D1N690 DNA replication and repair protein RecF n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N690_9BACT Length = 353 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 79/342 (23%), Positives = 139/342 (40%), Gaps = 1/342 (0%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L + +FR+ S G NG+GKT++LE+IY L R+FR++ ++R Sbjct: 4 IEQLELANFRSYAAGRFRFSSSRVVFTGPNGAGKTNLLESIYFLSILRSFRTVSGRELVR 63 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + F L R+ + L + G + I + +E + PE Sbjct: 64 IGERGFELKARVDKGAYHEELRLAQTLAGKRETWIGANRIRRSSEFIREFRAVVFVPEDR 123 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELI 182 + G +RR F D + G+ TA +N R L QRN AL+Q + ++ E+ Sbjct: 124 NISGGSSSFRRRFFDMMISTLDGGYLTALNNYYRALSQRNRALKQKEQAAVAAAFEPEMA 183 Query: 183 PLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERDR 242 A I+ R Y+ I +++ + E EY E+LERN +++ Sbjct: 184 VNAPLIARQRRIYAKLIEEEVSRMLAEDGNLEFRIVCRTDYPENAAEYREMLERNRPKEQ 243 Query: 243 QLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLID 302 + T GP + +G + S GQ++++ L+LA+ + R + L+D Sbjct: 244 LRSCTLSGPQLDEFDFLLNGKLLRYYGSTGQIRIISLLLKLAEFNLVKRAAKEPVAVLVD 303 Query: 303 DFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 D ELD+ + + Q F + + D Sbjct: 304 DVTGELDELNKARFFRTISGADQQFF-TFTELPELEIFRDAE 344 >UniRef50_D1CDE2 DNA replication and repair protein recF n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDE2_THET1 Length = 386 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 73/367 (19%), Positives = 140/367 (38%), Gaps = 41/367 (11%) Query: 22 SPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQE-------AFVLHGRL 74 G ++G N SGKT++LEAIY L ++ R+ +I E + + Sbjct: 2 PNGPILVLGPNASGKTTLLEAIYLLATTKSHRAGSDRELINWNTESEEGVPAFARVAAEV 61 Query: 75 QGEERETAIGLTKDKQG-------DSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + + +T K+ ++R++G + + +L + + + P+ L+ G Sbjct: 62 RRRS-PIQVEITILKESTAQGENVRKRIRVNGVN-KRAIDLIGQVNVVMFGPQDLDLIVG 119 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAA----------LRQVTRYEQLRPW 177 P RR +L+ + + +R++ QRN LR + +Q W Sbjct: 120 APSLRRRYLNITISQLDHQYVRTLQTYERVVLQRNTLIKALSDRAFKLRDESINDQFAYW 179 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE-FSLTFSFQRGW------------ 224 D EL+ + R E + + + + L+ +++ Sbjct: 180 DNELVNQGSYLLARRLEILSRMNELASMVHSKLTGSSQELSIAYKSTLFDSLPLQLDNPR 239 Query: 225 --EKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALR 282 E Y + + + + T GPH+ D+ G V SRGQ + ++ A++ Sbjct: 240 EEEIRDLYIKKIHDLRREELRRGMTLVGPHRDDISFLVGGVDVGVYGSRGQQRSVILAIK 299 Query: 283 LAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSD 342 LA+ + + +G + L+DD SELD ERR L + Q V+ + Sbjct: 300 LAEVDLMKSITGDLPILLLDDVVSELDPERRRYLLQNVLQLSQQALVTTTDLLTIGREFL 359 Query: 343 ENSKMFT 349 + +F Sbjct: 360 AEASLFE 366 >UniRef50_A1UU73 DNA replication and repair protein recF n=5 Tax=Bartonella RepID=A1UU73_BARBK Length = 378 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 138/368 (37%), Gaps = 17/368 (4%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI- 61 +T+L + +RN ++ S G NG+GKT++LEA+ L GR R V Sbjct: 6 VTQLKLAHYRNYHFLNVNFSSRHVVFTGHNGAGKTNLLEALSFLAPGRGLRRAAYSDVSC 65 Query: 62 -RHEQEAFVLHGRLQGE-ERETAIGLTKDKQGD-SKVRIDGTDGHKVAELAHLMPMQLIT 118 R E E FV+ RLQ E +IG + G ++ I+G + L + +T Sbjct: 66 SRGEGEGFVVFARLQCALYGEVSIGTALEAGGSNRRLHINGEN-EACDCLTDYCHISALT 124 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRY-EQLRPW 177 P L G RR FLD + ++ + ++ RN Sbjct: 125 PSMDGLFMGPTLDRRRFLDRMVLAIDSLHGRRIADYDKAMRARNRLFADGNDDRAWFNAL 184 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADT---------CKQFLPEFSLTFSFQRGWEKET 228 + ++ LA I+ R + + Q + E Sbjct: 185 EMQMAELATAIAAARIDVVQLLNDTFVQMSASIPFPRAFLQIDGSLEEALRKMSAVDVEE 244 Query: 229 EYAEVLERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 E+ + L RN DR T GPH+ DL+ AD + S G+ K L+ L L Sbjct: 245 EFLDRLRRNRAMDRAAGRTLEGPHRTDLQVFYADKNMAAASCSTGEQKALLIGLVLCHAH 304 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 S ++L+D+ A+ LD RR L L Q F++ + D ++ Sbjct: 305 LTGVMSNMAPIFLLDEMAAHLDFYRRAALFDILDDLGGQTFMTGTDR-ILFDSLKGRAEF 363 Query: 348 FTVEKGKI 355 F +E G + Sbjct: 364 FEIEDGAL 371 >UniRef50_D1Y3F5 DNA replication and repair protein recF n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y3F5_9BACT Length = 352 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 92/359 (25%), Positives = 147/359 (40%), Gaps = 15/359 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + + R+FRN+E A +A PG N L GANG+GKT++LEA++ + AF + Sbjct: 1 MRIAQTRFRNFRNLENALIAWEPGLNLLTGANGAGKTNILEALHVVTGWGAFSGSKCSDT 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ + E ERE I + +R+DG + +L + +P P Sbjct: 61 VKWQSEGGASLAAQAAGEREAIIEAVIMA--RASLRLDGK-LCRWGDLRNCVPSLTFLPS 117 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 L+ G P RR FLD C P + S +++ + R L ++ Sbjct: 118 DMALIEGAPSVRRRFLDLLCALYFPLYAYKLSEYRKITQHRRHLLGLGHSTR---VTEET 174 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERN--- 237 + L+ I R E A + + + L + G + E R+ Sbjct: 175 MANLSAWIWECRLEVIAALREHLEKWRGLLPRKIDLNLK-RGGSGNADDLLEDFHRSCAI 233 Query: 238 -FERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 ER+R GPH+ DL I +G + LSRGQ + AL + + R Sbjct: 234 LAERERASGLPLVGPHRDDLVIGCEGRLASEVLSRGQRRRAALALVMGAASAVERRGRAS 293 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L D+ ASELD+ R +L L+ ++ QVF + + + V GKI Sbjct: 294 PVLLFDEVASELDEAGRTVLMECLQHSRWQVFAATAE----SALPCFQGTRWQVSAGKI 348 >UniRef50_Q0BVD4 DNA replication and repair protein recF n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BVD4_GRABC Length = 373 Score = 233 bits (595), Expect = 7e-60, Method: Composition-based stats. Identities = 86/354 (24%), Positives = 134/354 (37%), Gaps = 15/354 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + FRN + PG +VG NGSGKT++LEAI L GR R+ + ++ Sbjct: 7 HIRTLTLTRFRNYAALAWSPPPGLVGVVGPNGSGKTNLLEAISLLSPGRGLRNARTDQLA 66 Query: 62 RHEQE---AFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAELAHLMPMQLI 117 R + ++ +H R+ + + + VRIDG AEL + + Sbjct: 67 RQGEGGDGSWAVHARILSPTGPVELATGVLPGTERRQVRIDGDIIRGQAELGAHITTVWL 126 Query: 118 TPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPW 177 TP+ L GP RR FLD + EP + L +R L L Sbjct: 127 TPQMDRLFQEGPAGRRRFLDRLVYGLEPAHAREVAAQAASLTERARLLAMRADPAWLAAV 186 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMAD--------TCKQFLPEFSLTFSFQRGWEKETE 229 + + A ++ R Y + + + S E E Sbjct: 187 EDSIARHATAVTASRLAYVTRLNDVLVQGGAGGFPPARLDLNCAIATRLSRHPAVEVEDW 246 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIR--ADGAPVEDTLSRGQLKLLMCALRLAQGE 287 L + E D + G H++DL ++ A G S GQ K L+ + L Sbjct: 247 LRAALRDSRETDGESGTQGIGAHRSDLLMKDAATGRSAS-IASTGQQKALLIGVTLGHAV 305 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMS 341 L GR + L+D+ + LD ERR LL + L+ Q F++A + Sbjct: 306 LLKAVRGRAPVMLLDEPMTHLDAERRRLLLTALRGLGGQGFLTATDRDAFDADL 359 >UniRef50_C0N5A3 DNA replication and repair protein recF n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N5A3_9GAMM Length = 325 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 159/313 (50%), Gaps = 7/313 (2%) Query: 49 GRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAEL 108 GR+FRS + +++ +Q+ + R +T IGL D Q +R++ ++++L Sbjct: 2 GRSFRSRALKHLVKKQQQRLTVFAR---SMDQTPIGLQYDLQSGLLIRLNNAPLKRLSDL 58 Query: 109 AHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV 168 A +P+Q I GPKYRR +DWG FH E F W + K+ L+QRNAA+R+ Sbjct: 59 AAHLPLQFIPANCHQFFELGPKYRRRMVDWGVFHVEHSFNFHWQSYKKALQQRNAAIRKY 118 Query: 169 TRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLT---FSFQRGWE 225 ++ WD LI +I+ +R Y + + +Q PE +Q+GW Sbjct: 119 KPCNEIALWDTHLIKHGMKITEFRQGYLQQLVKEFLPLFRQLCPELETASFVLRYQQGWN 178 Query: 226 KETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQ 285 KET++A+ L N ERDR L YT G H AD ++ D + LSRGQ KL AL +AQ Sbjct: 179 KETDFADYLRENIERDRALGYTRSGAHAADWSLKIDDGDPYEMLSRGQQKLFFLALSMAQ 238 Query: 286 GEFLTRESG-RRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDEN 344 + L + + LIDD +SELD + + L+ Q F+S+ + + + +N Sbjct: 239 IKLLAAQKEITNSVLLIDDLSSELDWHHQNTVIETLRTLPVQAFISSTNDDLSQLLKADN 298 Query: 345 SKMFTVEKGKITD 357 K F V+ G I++ Sbjct: 299 EKKFHVKHGVISE 311 >UniRef50_B5H639 DNA replication and repair protein recF n=1 Tax=Streptomyces pristinaespiralis ATCC 25486 RepID=B5H639_STRPR Length = 347 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 63/299 (21%), Positives = 115/299 (38%), Gaps = 24/299 (8%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M +T L + DFR+ ++ L PG VGANG GKT+++EA+ L + R + Sbjct: 1 MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLASHRVSSDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R + V+ + ER + L + ++ RI+ + + ++ ++ L PE Sbjct: 61 VRMGADRAVIRAAVTQGERSQLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR----------QVTR 170 +L+ G P RR FLD P S+ +R+LKQRN L+ + Sbjct: 121 DLSLVKGDPGERRRFLDELVTARSPRMAAVRSDYERVLKQRNTLLKSAAMARRHGGRGMD 180 Query: 171 YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRG------ 223 L WD+ L +++ R + A + + P + ++ Sbjct: 181 LSTLDVWDQHLARAGAEVTAQRLDLIAALQPLADKAYEALAPGGGPVALEYRSSAGPMDQ 240 Query: 224 ----WEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD---GAPVEDTLSRGQLK 275 + L +++ + T G H +L ++ T S G + Sbjct: 241 AHGREALFEQLTAALAEVRKQEIERGVTLVGLHCDELILKLGHCPPRDTRATASPGPTR 299 >UniRef50_D1BTA3 DNA replication and repair protein recF n=4 Tax=Actinomycetales RepID=D1BTA3_XYLCX Length = 485 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 71/329 (21%), Positives = 120/329 (36%), Gaps = 40/329 (12%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L + DFR+ + D+ L PG N VG NG GKT+++EAI + + R + Sbjct: 1 MYVSHLSLLDFRSYASVDVELEPGPNAFVGRNGQGKTNLVEAIGYVATLGSHRVSNDAPL 60 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R E V+ R+ +R + + L ++ RI+ + ++ ++ L PE Sbjct: 61 VRAGAERAVVRTRIVRGDRASTVELEITPGRANRARINRGQLGRARDVLGILRTVLFAPE 120 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT---------RY 171 L+ G P RR LD P + +R+ +QR+A L+ + Sbjct: 121 DLALVKGDPDGRRKLLDQLVVQLLPRAAGLLGDYERVNRQRSALLKSLRGQRAAGRSPDL 180 Query: 172 EQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEK---- 226 L WD + L QI R + + +A Q ++ + Sbjct: 181 GTLEVWDAKAAQLGGQILGMRLQLVQAMRPHVAAAYAQVSDADGHAELGYRSSLDAVLPD 240 Query: 227 --------------------------ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRA 260 ET + ++ + GPH+ DL + Sbjct: 241 DAGASAGGAAILPADLADAPPSAVELETLLLAGMAAARSQEVDRGVSLVGPHRDDLVLTL 300 Query: 261 DGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 G P + S G+ ALRLA L Sbjct: 301 GGLPAKGYASHGESWSFALALRLASYRLL 329 Score = 60.7 bits (146), Expect = 8e-08, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Query: 286 GEFLTRESGRR--CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 F T E G + ++DD +ELD RR LA + + QV V+A + V Sbjct: 413 ARFWTEELGHDAEPVLILDDVFAELDLRRRDRLAELVAPAR-QVLVTAAVPDDVPSGLM- 470 Query: 344 NSKMFTVEKGKIT 356 + F V G +T Sbjct: 471 -ATRFDVVTGAVT 482 >UniRef50_C7JHC3 DNA replication and repair protein recF n=8 Tax=Acetobacter pasteurianus RepID=C7JHC3_ACEP3 Length = 382 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 129/365 (35%), Gaps = 13/365 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L +L + +FRN E + L G NGSGKT++LEA+ L GR R+ + + Sbjct: 13 RLLKLTLSNFRNYERLAWSPDASLLVLTGENGSGKTNLLEAVSLLSPGRGLRAAPLTQFG 72 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQG---DSKVRIDGTDGHKVAELAHLMPMQLIT 118 R + + R++ E+ +G ++G + IT Sbjct: 73 RMGATNWGVSARIETEDEFLELGTGTQGGQERPRRVFLLNGRQIRGQEAWEDTLATVWIT 132 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR-QVTRYEQLRPW 177 P+ L + G RR FLD P + R + QRN L+ + + + L Sbjct: 133 PQMDRLFSEGASGRRRFLDRLVMAVTPHHARELAAYDRAMTQRNRLLQTRFSEHSWLSGL 192 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEF-------SLTFSFQRGWEKETEY 230 + + A ++ R E I + F + E Sbjct: 193 EASMARHAVAVAAARQETVRQICHYAQNGLGAFPAAIATLECAVAQKLETSPALAVEDWL 252 Query: 231 AEVLERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQGEFL 289 E L E D G H++D + S GQ K L+ + LA + Sbjct: 253 REKLADLREDDAARGRATFGTHRSDFLLEDLTSRQPAALASTGQQKSLLIGVVLAHARLV 312 Query: 290 TRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFT 349 T G+ + L+D+ LD RR L ++ ++ V ++ + ++ T Sbjct: 313 TDYRGQPPILLLDEPLVHLDAARRASLLEIVQDFRTTVLLTGTDQAPF-APLKQTAQFET 371 Query: 350 VEKGK 354 ++ G Sbjct: 372 LKNGA 376 >UniRef50_Q4FVT1 DNA replication and repair protein RecF n=2 Tax=Psychrobacter RepID=Q4FVT1_PSYA2 Length = 404 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 114/403 (28%), Positives = 180/403 (44%), Gaps = 54/403 (13%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + RL I RN+ +LA + N ++GANGSGKTS+LE ++ L G++FR Q R I+ Sbjct: 2 IERLQISYLRNLTPINLAPAA-CNVIIGANGSGKTSLLEGMFLLSRGKSFRHNQPKRYIQ 60 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 H ++A +H +L + + K + +R++ T + + L +P LI P Sbjct: 61 HHKDAATVHAKLSDG---RTLAIQKQADATTILRLNQTTVYNQSILTEQLPTLLIDPSTM 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-----RYEQLRPW 177 +L G RR LDW FH + GF W +RLLKQRN+ L+Q + +LR W Sbjct: 118 DMLEQGSASRRQLLDWLVFHMKQGFHPQWIAYQRLLKQRNSLLKQRRHLTHVQLAELRAW 177 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPE--FSLTFSFQRGWEKETEYAEVLE 235 DK L A I +R +++ Q LP L+ S+ G++ L Sbjct: 178 DKGLASHAALIHHYREAIFEAWQPYFSESIAQLLPAYAEQLSLSYNAGYDTSVALDIQLN 237 Query: 236 RNFERDRQLTYTAHGPHKADLRIR-----------------------------ADGAPVE 266 ++D QL YT G H+AD+ + Sbjct: 238 ERLDQDLQLGYTRIGNHRADIHVHWRSIRPIHKANEHLNSPLAAAADSTFKLPILKEQAA 297 Query: 267 DTLSRGQLKLLMCALRLAQGEFLTRESGR------------RCLYLIDDFASELDDERRG 314 + LSRG+ KLL+ ALRL+Q L + L+DD +ELDD Sbjct: 298 NILSRGEKKLLITALRLSQLPLLLNTGNDLEASVNDAKLSATPVVLLDDITAELDDRAIE 357 Query: 315 LLASRLKATQSQVFVSAISAEHVIDMSD--ENSKMFTVEKGKI 355 +L S L QVF+++++ + + + E ++F +++G I Sbjct: 358 ILLSTLAQLPCQVFMTSLTDSILPLVYEYWEKPQVFHMKQGSI 400 >UniRef50_D2LFZ4 DNA replication and repair protein RecF n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LFZ4_RHOVA Length = 400 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 150/381 (39%), Gaps = 29/381 (7%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + +L + DFRN L G L GANG+GKT+ LEA+ L GR RSL + R Sbjct: 9 IAKLTLTDFRNYRAVTLVTGLGPVVLAGANGAGKTNCLEAVSLLTAGRGLRSLPFPELAR 68 Query: 63 HE-QEAFVLHGRLQGEERETAIGLTK--------DKQGDSKVRIDGTDGHKVAELAHLMP 113 + + L + IG + V+ID L + Sbjct: 69 SGGSGGWAVAAELGVAGEDMHIGTGIQLPPDGMLTPRAARTVKIDHALAKGSGALV-RIR 127 Query: 114 MQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQ 173 M +TP L G RR FLD +PG+ A S +R ++QRN AL + Sbjct: 128 MLWLTPSMDGLFTGPAAERRRFLDRLVLSLDPGYGAAASAFERAMRQRNKALEEFDSPPM 187 Query: 174 L---------------RPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF 218 L + + L+ +I R + A T L E + Sbjct: 188 LTAIEAQMAAAAVAMAVARARAIAALSGEIEAERNRDPDSLFPWAALTLNGTLEEQAAAL 247 Query: 219 SFQRGWEK-ETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKL 276 S ++ YA L + +RDR T GPH++DL + + S G+ K Sbjct: 248 SEDTMRDELRDGYARALAQGRDRDRAAGRTLSGPHRSDLDVAHGPKAMPARMCSTGEQKA 307 Query: 277 LMCALRLAQGEFLTR-ESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAE 335 L+ L LAQ + R G L L+D+ A+ LD RR L S + A +QV+++ Sbjct: 308 LLVGLVLAQARLIKRAADGIAPLILLDEIAAHLDIGRREALFSSIVALNAQVWMTGTDLA 367 Query: 336 HVIDMSDE-NSKMFTVEKGKI 355 + + +++F V G I Sbjct: 368 TFTPLRNATETQLFVVSNGTI 388 >UniRef50_O83049 DNA replication and repair protein recF n=3 Tax=Treponema RepID=RECF_TREPA Length = 352 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 75/352 (21%), Positives = 137/352 (38%), Gaps = 8/352 (2%) Query: 10 DFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV--IRHEQEA 67 +FRN+ + +S F VG NG GKT++LE +Y +G +FR+ + Sbjct: 5 NFRNLAHHTIDISSPEVFFVGNNGQGKTNILEVLYLAAYGNSFRTRTESELYATHARSNE 64 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + + +GE + + K G ++ + EL +P L + G Sbjct: 65 YRVKVMYRGEY-THTVQI-FSKNGKKRIEKNLKKIRTKKELISSIPCILFFHNDLDFVVG 122 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKELIPLAEQ 187 P+ RR FLD P + L K +N +++ R + L D ++ + Sbjct: 123 TPERRRFFLDQSLSMCNPLYLEYLQKYHALTKTKNREIKE-KRVQLLDALDTQIATVGFD 181 Query: 188 ISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKE--TEYAEVLERNFERDRQLT 245 + WR + ++ + ++ W E L + + D + Sbjct: 182 LVQWRTQLVRDFNVIFTKYYERLGDLAQVRIEYKPSWSDSSVEEIVHSLYKRRKHDLAMG 241 Query: 246 YTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFA 305 + GPH+ + A S GQ +L+ LR++Q F T +G+ + L+DD Sbjct: 242 MSMSGPHRDKIHFTRSQALFIPQASTGQRRLVSLVLRMSQAVFYTGVTGKLPVLLMDDVL 301 Query: 306 SELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 ELD E+R L Q+F + + E E ++++ V +G + Sbjct: 302 LELDPEKRERFMMSLPPYD-QLFCTFLPGEAYRRYGREKTRVYFVSEGACHE 352 >UniRef50_Q72GX7 RecF protein n=3 Tax=Thermus RepID=Q72GX7_THET2 Length = 343 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 88/336 (26%), Positives = 140/336 (41%), Gaps = 10/336 (2%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L R+FRN+ PG + LVGAN GKTS+L I+ G + + Sbjct: 1 MRLLLFRQRNFRNLALEAYRPPPGLSALVGANAQGKTSLLLGIHLALGGEVPLG--LADL 58 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +E LH ++ E + G +V ++G + L L L++P Sbjct: 59 VRFGEEEAWLHAEVETELGAYRLEHRLGPGG-REVLLNGKRV-SLRALWELPGSVLVSPL 116 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 + G + RRA+LD + S ++ L+QRNA L+ E L WD+E Sbjct: 117 DLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNALLKAG--GEGLSAWDRE 174 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFER 240 L ++I R + A + + + + + LE + Sbjct: 175 LARYGDEIVALRRRFLRRFAPILREVHAALAAKEA---GLRLEETAGEGVLRALEASRAE 231 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 +R+ T GPH+ DL +G P SRG+ K L ALRLA+ L G L L Sbjct: 232 ERERGQTLVGPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLL 291 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 +D++ ELD+ RR + + +A Q ++ + A Sbjct: 292 VDEWGEELDEARRRAVLAYAQALP-QAILAGLEAPP 326 >UniRef50_B0BVU8 DNA replication and repair protein recF n=15 Tax=Rickettsia RepID=RECF_RICRO Length = 360 Score = 230 bits (586), Expect = 8e-59, Method: Composition-based stats. Identities = 75/351 (21%), Positives = 149/351 (42%), Gaps = 10/351 (2%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L L + ++RN + +L L+G NGSGKT++LEAI GR RS ++ V Sbjct: 5 FLHSLSLENYRNFKNLELKTDNTPIILIGENGSGKTNILEAISLFYPGRGLRSAKLANVC 64 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + ++ ++ LQ + + + ++ EL+ M +TP Sbjct: 65 KTSEDHCLVKALLQSKLGLAEFTTQFKRSSNRRITEYNESKIANNELSKFTSMVWLTPHM 124 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAAL-RQVTRYEQLRPWDKE 180 + G RR FLD ++ +P S + + +RN L + L+ +++ Sbjct: 125 EGIFTSGSNDRRKFLDRIVYNFDPKHAELVSKYEYYMHERNKILVEDIRDDNWLKIIEEK 184 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS------FQRGWEKETEYA-EV 233 + ++ I+ R + + + D +F P+ L+ G E + Sbjct: 185 MADISNHIANNRLKTLEFMQQAIDDLENEF-PKADLSIDGIVEQKILNGKENIVSFITAE 243 Query: 234 LERNFERDRQLTYTAHGPHKADLRIRADGAP-VEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + +D+ L T+ G HK+D ++ + S G+ K ++ A+ LA+ + + Sbjct: 244 LYQTRSKDKLLGRTSFGVHKSDFLVKHQKKNILAKFCSTGEQKAILIAIILAEMNYAIKL 303 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDE 343 + + L+D+ LDD+RR L L Q++V+ + E + + +++ Sbjct: 304 TKIAPILLLDEVFVHLDDKRRQYLIEFLTGLNMQLWVTTTNLEGIENFANK 354 >UniRef50_B4CW13 DNA replication and repair protein recF n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CW13_9BACT Length = 352 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 77/348 (22%), Positives = 142/348 (40%), Gaps = 11/348 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L +R FR + ++ +PG NF+VG N GKTS+LEA L ++ R ++ VI+ Sbjct: 13 LRGLKVRHFRCFDAREVEFAPGLNFIVGPNAHGKTSLLEAACILLRLQSPRITRLAHVIQ 72 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 HE+ FV+ G + K+ +D + E + + Sbjct: 73 HERRGFVVDGYFGVRHLQFYFSRE-----RKKLALDEVEQKSAREYLEIGRVVYFANSDI 127 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDKEL 181 L+ G RR FLD+ + + A + +R L+ RN L+ + R+ ++ +D+ L Sbjct: 128 ELVRGSGDGRRRFLDFVATQRDGTYRQALRDYERALRSRNLLLKSSSPRWREIAAFDEPL 187 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLP-EFSLTFSFQRGWEKETEYAEVLERNFER 240 + ++++ RA+ + + + L + G ++ L Sbjct: 188 LSAGQRVAAARAKLIEELQPEAEKAHRGISGAREQLQLEYVPGG--GEDFPATLAAAHNE 245 Query: 241 DRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYL 300 D +L T+ GPH+ D+R +G S GQ + L+ AL+L L + + L Sbjct: 246 DARLRQTSAGPHRDDVRFMLNGQS-SSFASEGQQRTLVLALKLGAARLLEQRFESAPVLL 304 Query: 301 IDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 +DD EL D R +Q ++ + + ++ + Sbjct: 305 LDDIFGEL-DLDRRAALLAALPASAQKIITTTHLDWLPAEAEASIIRL 351 >UniRef50_C0W4S9 DNA replication and repair protein recF n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4S9_9ACTO Length = 409 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 89/409 (21%), Positives = 151/409 (36%), Gaps = 57/409 (13%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M ++ L DFR+ E L+L PG +G+NG GKT+++EA+ L + + R + Sbjct: 1 MYVSDLSADDFRSYEHLVLSLEPGVTAFIGSNGQGKTNLVEAVGYLSNLTSHRVGADSAL 60 Query: 61 IRHEQE------AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPM 114 IR + VL ++ ER T + + ++ R+ + + EL ++ Sbjct: 61 IRRAEPGQPQPAGAVLRAKVVHGERPTVLEIELISGKANRARLGRSPV-RPRELLGVLRT 119 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTR---- 170 + PE +L+ P RR FLD P + ++L QR + L+ Sbjct: 120 VIFAPEDLSLVREEPGVRRRFLDDLAVTLRPSLAGVRTEHDKILAQRASLLKSARAARRS 179 Query: 171 ----YEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWE 225 L WD +L A + R + + +A + S + +++ Sbjct: 180 TASMLSTLEVWDAQLAAAAATLIAARVDVVRRLRPWVASAYEAVSQAQSPVHLAYRSSLL 239 Query: 226 KETEY-----------------------------AEVLERN----FERDRQLTYTAHGPH 252 AE LE R+ G H Sbjct: 240 AHEGMADPDPRAITPGQEESWPPGEAELLDQASTAERLEAAMGQLHAREIDRGANLVGAH 299 Query: 253 KADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE-----SGRRCLYLIDDFASE 307 + +L + G P + S G+ L ALRLA E L + + ++DD + Sbjct: 300 RDELSLFLSGMPAKGFASHGEQWSLALALRLASYEMLRHDVAAYGGDGEPVLILDDVFAS 359 Query: 308 LDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LDD+RR LA + Q QV V+A + V + +V +I+ Sbjct: 360 LDDKRRRALAHTVAGAQ-QVLVTAAVPQDVPGEL--DGTRLSVAGSRIS 405 >UniRef50_C0R4Z7 Recombination protein F n=10 Tax=Wolbachia RepID=C0R4Z7_WOLWR Length = 365 Score = 229 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 77/355 (21%), Positives = 143/355 (40%), Gaps = 6/355 (1%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + +L + +FR+ +L + G NG GKT++LEAI L + + + Sbjct: 6 YIKKLKLHNFRSHSNFELDSDDSSVVITGKNGIGKTNILEAISLLAKSNGMKKAKASEIQ 65 Query: 62 -RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 R E +V+H +IG+ K ++IDG + L + + + P+ Sbjct: 66 NRFSNEDWVVHYDFFNGMDFNSIGIAKSFD-KKLIQIDGKTQSSYSSLYKISNVIWLIPQ 124 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT-RYEQLRPWDK 179 +L P R FLD E + + ++ ++R+ LR+ T L + Sbjct: 125 MDYVLLNSPSDRLKFLDRIVSLFEENYTCCYMKHRKAKRERSKLLRENTLDKNWLSSLEN 184 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAE-VLERNF 238 + A I R+ + + + + P+ SL FS Q + EY + L+ N Sbjct: 185 IMAVNAVSILRMRSSVLKTLQDTIDNHSGELFPKASLKFSSQLTLDDTAEYFQNRLKENR 244 Query: 239 ERDRQLTYTAHGPHKADLRIRADGAPV-EDTLSRGQLKLLMCALRLAQGEFLTRESGRRC 297 E+D G H + R+ V + S G+ KLL+ ++ L+ + + Sbjct: 245 EKDSLTGRVTFGVHNDNFRVFCQKRNVPINLCSTGEQKLLLLSIILSSVKARCIHYNKAP 304 Query: 298 LYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 L L+DD S LD R L + + Q Q +++ ++ ++ + K F + Sbjct: 305 LLLLDDIMSHLDKHYRKALIEEVLSIQCQTWITDVNQDNFNSYLY-SFKFFELSN 358 >UniRef50_B5EJ66 DNA replication and repair protein RecF n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EJ66_ACIF5 Length = 350 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 111/357 (31%), Positives = 177/357 (49%), Gaps = 12/357 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M L L I+ R IET DL +N+L+GANG+GK+SVLEAI+ LG G+ +R V Sbjct: 1 MPLEALHIQSVRCIETLDLKTDRQWNWLIGANGAGKSSVLEAIHVLGTGQTWRHGS-RHV 59 Query: 61 IRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 +R +A+++ L G + + ++R DG L ++P+Q + + Sbjct: 60 LREGDDAYLVSAHLSGHFLALR-----RRGEEREIRYDGEPLGSAWLLLDILPLQSLHED 114 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDKE 180 ++G + RR LDWG ++ + + T + +R L+QRNA L+ + PWD Sbjct: 115 NSHFVSGTAEGRRRVLDWGIYYADRYYGTVFRQYRRALQQRNAWLKSDHGRQ---PWDDG 171 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGWEKETEYAEVLERNFE 239 +I E I R + A + ++ +++ S L+ GW++ + L R+ E Sbjct: 172 VIVAGEDIQQRRQAHLAAVQLEVVTLWERWSGSLSGLSLHLHSGWKEGMALGDCLLRDHE 231 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 +DR+ YT GPH+A+L R G P D LSRGQL++L A RLAQ + L + Sbjct: 232 QDREAGYTHSGPHRANLAFRVRGKPAPDILSRGQLRVLGLAYRLAQVKILKQAGLPLPTI 291 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 LIDDFA+ELD R + L Q+F + +A + + F + G++ Sbjct: 292 LIDDFAAELDASARDWWVNELDLLGVQIFAAVTTARQIPATVGGSH--FCLAAGQLE 346 >UniRef50_D1B7J1 DNA replication and repair protein RecF n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B7J1_THEAS Length = 354 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 86/360 (23%), Positives = 142/360 (39%), Gaps = 14/360 (3%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAF-RSLQIGR 59 M + + +RN+E + LSPG N G NG+GKT++LEA F R I R Sbjct: 1 MHFRSIKLYRYRNLEDQAVNLSPGLNLFFGPNGAGKTNLLEAFCAASGWGGFGRPSMIPR 60 Query: 60 VIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 R + + + E I ++IDG+ +EL MP+ P Sbjct: 61 --RGDGSPSPMSAAVAQASGEEEITCAFQFNRRPLLKIDGSAV-TGSELRRRMPVLAFLP 117 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 + L++G P RR LD C PG+ A + +R ++QR A+LR E + Sbjct: 118 DSAALVDGPPSMRRRLLDMVCVLCVPGYGEALTRYRRAVRQRMASLRCGRWEEM---TLR 174 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETE---YAEVLER 236 + A +I R+ + + + ++ Q E + E Sbjct: 175 VMAREAVEIWRARSVVAPRLCQLSQAFASRLGIHLEASYVGQHESLDRLEPGRFLEAARS 234 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 + GPH+ D+ + + G LSRGQ + AL +A + + + R Sbjct: 235 IKGEEMTHRRPRFGPHRDDVVLTSGGHAAGLALSRGQRRRAFAALVMASAQVVYKALRRG 294 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKIT 356 + ++D+ +E+D E R L+A L QV S D + ++ V G +T Sbjct: 295 PVLVMDEVFAEVDREGRTLMARGLVELGVQVLASTADLPEAPDG----ASLYRVRSGVVT 350 >UniRef50_C1TP62 DNA replication and repair protein recF n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TP62_9BACT Length = 354 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 89/361 (24%), Positives = 151/361 (41%), Gaps = 16/361 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + R+FRN+ET + N L+G NG+GKT++LE+++ L F+SL+ + Sbjct: 1 MFFSESGTRNFRNLETGRIKWDRKLNLLIGPNGAGKTNILESLHILTGWGPFKSLRKSPL 60 Query: 61 IRHEQEAFV--LHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLIT 118 + + L G +GE+ + + ++ DG + + + +P Sbjct: 61 VNWNSDESRGFLEGTFEGEDN---VLIQSSVTSRCAMKCDGKRSNCAS-IRFRVPALAFL 116 Query: 119 PEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWD 178 P L+ GGP RR FLD C P + + +R ++ + A L + E + D Sbjct: 117 PGDLALIEGGPSVRRRFLDVLCALLYPVYALKLTEYRRAVRHKRALLSEGRSTELI---D 173 Query: 179 KELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS---FQRGWEKETEYAEVLE 235 + P+AE I T R + S + + L S Y E + Sbjct: 174 SVMAPMAEWIWTCREKASLAVTMGLESFSDLLPGPIELALSRGGIGLAGNNPIGYIEGVR 233 Query: 236 RNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGR 295 + GPH+ DL I A G SRGQ + A+ +A G + R+ R Sbjct: 234 SRRRAEIGSGRPLVGPHRDDLTIDASGMEASSRFSRGQRRRTSLAMVMAAGWAVERKLRR 293 Query: 296 RCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKI 355 + L+D+ ASELD R + L ++ Q+F + + + ++TV +G+I Sbjct: 294 SPILLLDEVASELDQSGREITVETLVSSGWQIFAATAEDDLIRWP----GSLWTVREGRI 349 Query: 356 T 356 T Sbjct: 350 T 350 >UniRef50_B4WQ25 DNA replication and repair protein recF n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WQ25_9SYNE Length = 401 Score = 222 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 153/399 (38%), Gaps = 50/399 (12%) Query: 8 IRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRHEQEA 67 +++FRN + +A L+G N GK+++LEA+ L ++ R+ + ++ ++ Sbjct: 1 MQNFRNYSSQSVAFGAPKTILLGDNAQGKSNLLEAVELLATLKSHRTSRDRDLVGEGKKT 60 Query: 68 FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGFTLLNG 127 + +LQ E + + L G ++G + + + + L+ G Sbjct: 61 AHIKAQLQKELGPSELNLVLRNGGRRATILNGETLKRQQDFLGSLNAVQFSSLDIDLVRG 120 Query: 128 GPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE--------QLRPWDK 179 GP RR+++D EP + ++LKQRNA ++Q T E Q+ WD Sbjct: 121 GPGERRSWIDTLLTQLEPVYAYILQQYNQVLKQRNAFIKQHTDEENSQPFDSTQMALWDA 180 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFS-LTFSFQRGW-------------- 224 +L+ ++ R+ + + + L ++Q Sbjct: 181 QLVAAGTRVIRRRSRGLQRLIPLAQAWHRAISGDAEQLMITYQPNISTTVSTTGLSTEAG 240 Query: 225 --------------------------EKETEYAEVLERNFERDRQLTYTAHGPHKADLRI 258 + + E ++ + + GPH+ D+ Sbjct: 241 LSTEETLLLKDPKKDSVEDAQLDDPDHIQQVFFEKIKSRAIAEYHQRTSLAGPHRDDIDF 300 Query: 259 RADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLAS 318 + P S+GQ + L+ AL+LA+ E + G L L+DD +ELD +R+ L Sbjct: 301 SINHTPARQYGSQGQQRTLVLALKLAELELIEAVIGEPPLLLLDDVLAELDLKRQNQLLE 360 Query: 319 RLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 ++ + Q ++ E S++ TV +G + + Sbjct: 361 TIED-RFQTLITTTHLGAFDAKWLEQSQILTVHQGALLE 398 >UniRef50_C7M116 DNA replication and repair protein RecF n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M116_ACIFD Length = 346 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 86/356 (24%), Positives = 152/356 (42%), Gaps = 14/356 (3%) Query: 4 TRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIRH 63 L I RN++ + +VG+NG GKTS+LE++ + GR+FR+ ++R Sbjct: 2 RSLRITGLRNLDLTIDHVPDDIIAVVGSNGHGKTSLLESVSVVLAGRSFRTHDRSALVRV 61 Query: 64 EQEAFVLHGRLQGE-ERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEGF 122 + V+ ++ E +G D++G + R+DG + +P+ P+ Sbjct: 62 GHDEAVVVADVERELAPPVRVGRRVDREGRLETRVDGQREQR----GPSLPVVSFHPDDV 117 Query: 123 TLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDKEL 181 + +GGP+ RR FLD + G +R+L+QR ALR E L ++ L Sbjct: 118 QIASGGPEQRRRFLDECVVGLDRGAAIRLRQAERVLRQRTEALRAPVLDEVTLSILEERL 177 Query: 182 IPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFERD 241 + +++ RA + IA + L RG E E L D Sbjct: 178 ARASVEVAELRARAAEVIAPHARAVIDEMLMSAGRVVVTYRGAGDEATLLEQLRARRGDD 237 Query: 242 RQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLYLI 301 R+ T+ G H+ D+ I DG P+ S+GQ++ ++ AL++A + + + ++ Sbjct: 238 RRRGVTSVGFHRDDVEILLDGEPIRRMGSQGQVRTVVVALKVALARAMEAVTKEPPVLVL 297 Query: 302 DDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKGKITD 357 DD +ELD ER + ++ Q F+S + + G + D Sbjct: 298 DDLLAELDAERARRAVAMME--GMQAFISHTAPVEGSGFE------LRISHGALVD 345 >UniRef50_Q0ATT8 DNA replication and repair protein RecF n=2 Tax=Hyphomonadaceae RepID=Q0ATT8_MARMM Length = 384 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 94/367 (25%), Positives = 144/367 (39%), Gaps = 20/367 (5%) Query: 6 LLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV-IRHE 64 L + +FR+ DL LSP L G NG+GKT++LEAI L GR RS V R Sbjct: 17 LRLTNFRSYPDLDLELSPAPVALFGENGAGKTNLLEAISFLAPGRGMRSAGADGVATRSG 76 Query: 65 QE---AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + + E +G+ + RIDG LA LMPM +TP Sbjct: 77 ADIAPEWAVFAEADTREGGFRLGVGARGSARRETRIDGEPAA-QNALARLMPMIWLTPAQ 135 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ-VTRYEQLRPWDKE 180 L G R F D +P A S ++ +R L + L + E Sbjct: 136 DRLFAGPRADRLKFFDRLVHAADPAHADAASAYEKSRTRRQRLLDEGGQDPSWLGAIEVE 195 Query: 181 LIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ---------RGWEKETEYA 231 + ++ R + + ++ + P+ L E E + Sbjct: 196 MAGHGVAMAAARLDALIRLQGEIDQRPEGVFPQADLALDGAVEADLAEGLTAGEAEDRFL 255 Query: 232 EVLERNFERDRQLTYTAH-GPHKADL--RIRADGAPVEDTLSRGQLKLLMCALRLAQGEF 288 L RD T GPH+ +L R RA P D S G+ K L+ L LAQ Sbjct: 256 AALRDGRRRDAAAGRTLTRGPHRTELLARHRAKDQPAGD-CSTGEQKALILTLALAQARA 314 Query: 289 LTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMF 348 L ++ G L L+D+ + LD RR LA + A+ SQ +++ + + + + + Sbjct: 315 LGQQWGVAPLLLLDEACAHLDALRRDGLAREILASGSQAWLTGVEK-VLFEPFGDAIQYR 373 Query: 349 TVEKGKI 355 V +G + Sbjct: 374 EVHEGGV 380 >UniRef50_C9M5Q1 DNA replication and repair protein recF n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Q1_9BACT Length = 351 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 94/357 (26%), Positives = 147/357 (41%), Gaps = 15/357 (4%) Query: 1 MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRV 60 M + L R FRN+ ++ S N + G NGSGKT+ LEA+ L F + + + Sbjct: 1 MRVVGLRTRRFRNLAAQKVSFSSEMNLITGENGSGKTNFLEALNCLCGWGPFSAGRWSEL 60 Query: 61 IRHEQE-AFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITP 119 E+ AF L G GE + +R+DG ++ P P Sbjct: 61 TCWEENGAFELVGSFDGESGG---TVQVLCASRPSLRLDGDRA-TWTDVRLFAPCLSFLP 116 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 L+ GGP RR FLD G P + S+ +RL++ + LR + D+ Sbjct: 117 AHMALIEGGPVVRRRFLDVGTALLYPLYARRLSDWRRLVRHKRYLLRLGKPGD---VADR 173 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRG---WEKETEYAEVLER 236 + PLA + R E+ + ++ + G ++ E ++A LER Sbjct: 174 IMKPLAGWLWLKREEFVGALQRELDAQADLLSCPVQIGLHRGGGGACFDPEEDFAAGLER 233 Query: 237 NFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRR 296 +R+ GPH+ DL + D SRGQ + AL LA G + + GR Sbjct: 234 LGPAERKSGLPLVGPHRDDLTLTVSERRAIDYFSRGQRRRAALALILAAGGAVKSQLGRS 293 Query: 297 CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEKG 353 + LID+ ASELD+ R + L + QVF + + + D F + +G Sbjct: 294 PILLIDEVASELDELGRQKVVQALGQSGCQVFAATAEPQSLDWPGDR----FVMRQG 346 >UniRef50_C5SAH6 DNA replication and repair protein RecF n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SAH6_CHRVI Length = 366 Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 159/355 (44%), Gaps = 10/355 (2%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L I RNI DLA L GANG+GKTSVLEAIY L GR FR + G + Sbjct: 15 LRSLRIESLRNIRRLDLAPDTRTLLLTGANGAGKTSVLEAIYLLARGRTFRGTKAGPLTT 74 Query: 63 HEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG---HKVAELAHLMPMQLITP 119 + + GR Q +R+ + L K+G + VR A+ + ++L+ Sbjct: 75 QGEFYTRVEGRYQPSDRDV-VRLRYVKEGATAVRDIHPPLWAETGGADWRSPLQVKLVGE 133 Query: 120 EGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYEQLRPWDK 179 LL+G P RR FLDW FH E F + R+L QRNAA+R QL WD+ Sbjct: 134 NAQILLDGDPSLRRRFLDWNVFHVEHRFAQVQKDFTRVLMQRNAAIRSG--GSQLGLWDR 191 Query: 180 ELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYAEVLERNFE 239 I LAE + RA + A D C + ++RGW E E L + Sbjct: 192 RFIALAESVDRQRAAFHAEWRTCFLDLCGDYPFLHGTDLRYRRGWPDGRELGETLVALAD 251 Query: 240 RDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRESGRRCLY 299 ++ YT GP +AD R D SRGQ K+++ L+LA ++ Sbjct: 252 QELARGYTLAGPSRAD--FRIDPGEGRRGFSRGQTKIVVALLQLAAERVHRAHGREPVIW 309 Query: 300 LIDDFASELDDERRGLLASRLKATQSQVFVS--AISAEHVIDMSDENSKMFTVEK 352 L+DD +ELD L S AT +QV + A + I + E+ MF VE Sbjct: 310 LLDDLEAELDRTLAERLWSAFGATGNQVIATRVATDGDPGIFGNTESLTMFHVEH 364 >UniRef50_B9KH38 RECF protein (RecF) n=5 Tax=Anaplasma RepID=B9KH38_ANAMF Length = 371 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 69/360 (19%), Positives = 138/360 (38%), Gaps = 13/360 (3%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 + + + +FRN A+L L+G NGSGKT++LEAI L G R++ + Sbjct: 9 IQSIKLCNFRNYTRAELESHGHSVVLLGENGSGKTNILEAISLLSKGPGLRNVSAACMQN 68 Query: 63 HEQEA-FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 E A + +H + + ++ +TK + ++ ID G + L +++ + + P+ Sbjct: 69 RESSAPWSVHHAVLSGNAQCSVSITKHEN-KRRLLIDEKAGL-YSTLHNMLCIVWLMPQL 126 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQV-TRYEQLRPWDKE 180 +L P R F D + + + ++ + R LR+ L + Sbjct: 127 DHILLKAPSERLRFFDRVVHIFDKDYSSHIVRYEKAKRDRRKILREAPQDVNWLTSLENV 186 Query: 181 LIPLAEQISTWRAEYSAGIAADMADT-CKQFLPEFSLTFS------FQRGWEKETEYAEV 233 + I+ R + MAD +F++ + + Y + Sbjct: 187 MAASGVCIARMRLNALEILQKTMADNDINSPFLKFNIHLDSAVFELLESQEHAVSRYMQQ 246 Query: 234 LERNFERDRQLTYTAHGPHKADLRIR-ADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L + +D T+ G H +I AD S G+ K+L+ +L L + Sbjct: 247 LGNSRMKDMHGQLTSFGIHNDHFQISNADKNLAASNCSTGEQKILLLSLLLTAAVAKRKV 306 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTVEK 352 + + L+DD S LD + L +K Q +++ + + + + + + Sbjct: 307 HNQAPIMLLDDIMSHLDYTHKQELVQTIKDVGCQTWITDVDDRNFEGL-ERHFVRLRITD 365 >UniRef50_A5CD18 DNA replication and repair protein n=2 Tax=Orientia tsutsugamushi RepID=A5CD18_ORITB Length = 383 Score = 214 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 68/365 (18%), Positives = 139/365 (38%), Gaps = 25/365 (6%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 +T+L++ ++RN+ ++ ++G NGSGKT++LE+I GR R + ++ Sbjct: 14 RITKLVLHNYRNLTELTVSPKCDKILIIGKNGSGKTNLLESISLFAPGRGLRGAKYSDIL 73 Query: 62 RHEQE-------------AFVLHGRLQGEERETAIGLTKDKQGDSK-VRIDGTDGHKVAE 107 R E ++ LQ I + + ++++ Sbjct: 74 RKEANSSSSSSNCHNTYSQWIAEITLQTAINIVKISTNYYQNTTKRNIKLNDNTITSHK- 132 Query: 108 LAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALR- 166 L L+ M ITP+ ++ G RR LD + + + + L++R LR Sbjct: 133 LLELVNMICITPQMESVFLNGATQRRKLLDRIVYLFDYKHAERVNKYEYYLRERMILLRS 192 Query: 167 QVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFS------- 219 ++ + + L ++ +I++ R + + + F P+ L Sbjct: 193 NSSQTRWINVIENCLASISVEIASCRYNAIKQLQLYLDEIDAPF-PKVKLDIQCQIAELC 251 Query: 220 FQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRAD-GAPVEDTLSRGQLKLLM 278 Q+ + + D + G H++D ++ + S G+ K L+ Sbjct: 252 LQQSPKLLELINSRFCNSRTIDGNSGKSNFGVHRSDFKVIHSVKNQLAQFCSTGEQKALL 311 Query: 279 CALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVI 338 +L +AQ + R + L+D+ LD E+R LA L Q ++S+ + Sbjct: 312 ISLLIAQMLQSRKNYNRFPILLLDELFIHLDIEKRQYLAKFLTQFPVQCWISSTEPDDAN 371 Query: 339 DMSDE 343 S+ Sbjct: 372 LFSNN 376 >UniRef50_B5IPN5 DNA replication and repair protein recF n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IPN5_9CHRO Length = 391 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 87/368 (23%), Positives = 151/368 (41%), Gaps = 18/368 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 L RL + FRNI +L L ++G NG GK+++LE + LG R R+ +I Sbjct: 24 RLERLELLQFRNITRLELNLEASRLLVLGPNGEGKSNLLEGVELLGSLRTHRTGSDRDLI 83 Query: 62 RHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPEG 121 + + G E + L +G + R +G + +L + + Sbjct: 84 QQGCSHARIRGLTARGE---LLQLELRHRGGREARRNGKPLERQLDLLGDLRCVSFSALD 140 Query: 122 FTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQ----VTRYEQLRPW 177 L+ G P RR +LD EP + S RLL+QR+ LR+ + L + Sbjct: 141 LELVRGEPAGRRQWLDRVVLQLEPLYGELLSRYGRLLRQRSQLLRRGLGGGEQAGLLDAF 200 Query: 178 DKELIPLAEQISTWRAEYSAGIAADMADTCKQFL-PEFSLTFSFQRGWEKETEYAE---- 232 D+++ + ++ R + A ++ +L +++ G E + AE Sbjct: 201 DQQMAVVGTRLHRRRHRALQRLEPLAAHWQQRLSGGRDALAIAYRSGTHLEGDEAEEPWR 260 Query: 233 -----VLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKLLMCALRLAQGE 287 L + + +L + GPH+ ++ + G P S GQ + L+ AL+LA+ E Sbjct: 261 AALHSQLAAQRDTELRLGQCSVGPHRDEVALSLGGQPARRYGSAGQQRTLVLALKLAELE 320 Query: 288 FLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKM 347 + G L L+DD +ELD R+ LL + Q VSA + S++ Sbjct: 321 LVRSVVGDPPLLLLDDVLAELDPTRQQLLLEAVGE-GHQCLVSATHLGAFSAGWQQRSQI 379 Query: 348 FTVEKGKI 355 + G + Sbjct: 380 VHLRAGAL 387 >UniRef50_Q0VT28 DNA replication and repair protein recF n=3 Tax=Alcanivorax RepID=Q0VT28_ALCBS Length = 332 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 164/326 (50%), Gaps = 10/326 (3%) Query: 39 VLEAIYTL-GHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRI 97 +LEAIY + GR+FR ++ R++R EA L+ + G + IG+ + G +++ Sbjct: 1 MLEAIYFIGSGGRSFRGGRLSRLVRDGAEAATLYAEVVGVQDVHRIGIRRTPGGIDAIKL 60 Query: 98 DGTDGHKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRL 157 DG ++E+A L+P+ + P L+ G + RR F+DWG FH E F W Sbjct: 61 DGQTPKALSEVAVLLPVLALHPTSVELVFGASQLRRRFMDWGMFHVEHQFMPVWRAGSAA 120 Query: 158 LKQRNAALRQVT-RYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSL 216 LKQRNA LR +L W+++L +++I R Y + + + PE + Sbjct: 121 LKQRNALLRAGNPNLRELGFWNQQLSQTSDRIEGLRRGYLNALQRGLDEALTVLAPELKI 180 Query: 217 TFSFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL 276 Q G K YA+ L R D + ++ G H++D+RI + G D LSRGQ KL Sbjct: 181 RLRLQTGLHKGESYAQALSRLQSDDLRRGFSQAGFHRSDIRIESHGVVARDRLSRGQAKL 240 Query: 277 LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEH 336 + L LAQ +++ SG+ C L+DD A+ELD+E R L L T Q ++A+ Sbjct: 241 VAYGLVLAQLPMISQ-SGKVCTLLVDDLAAELDEEHRNQLLGYLATTGHQTLITALDMPQ 299 Query: 337 VIDMSDEN-------SKMFTVEKGKI 355 + ++N +KMF VE GK+ Sbjct: 300 WAAIVNDNDALQSVENKMFHVEHGKL 325 >UniRef50_A5FW24 SMC domain protein n=3 Tax=Acetobacteraceae RepID=A5FW24_ACICJ Length = 379 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 82/365 (22%), Positives = 137/365 (37%), Gaps = 14/365 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + DFR+ D L G NG+GKT++LEA+ L GR R ++ + Sbjct: 15 RIESLRLTDFRSYARLDWQPGGMVVALAGPNGAGKTNLLEAVSLLAPGRGLRGARLAELA 74 Query: 62 RH--EQEA-FVLHGRLQGEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELAHLMPMQL 116 R + + R+ G E AIG + ++ +DG A Sbjct: 75 RRAPGASGGWAVAARIDGPEGRFAIGTGIEAGQGERRRLLLDGEPAAAARV-AARFSCLW 133 Query: 117 ITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLR 175 +TP+ L G RR FLD EPG + + + RN + L Sbjct: 134 LTPQMDRLFTEGASARRRFLDRLVLALEPGHASEVAAFEAASANRNRLIEAGGYDPLWLA 193 Query: 176 PWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQRGWEKETEYA---- 231 + + A ++ R + A +A P L+ G E A Sbjct: 194 TIEDSMARHAAALTAARLHVIERLNALLAAGAADPFPAARLSLDCPIGAELAHRPALAVE 253 Query: 232 EVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSR-GQLKLLMCALRLAQGEFLT 290 E L + R A P +ADL + + + L+ GQ + ++ A+ LA + Sbjct: 254 EWLRGRYAATRAEPVAALSPQRADLGLEHASSGLAAALASTGQQRAMLVAIVLAHAALVA 313 Query: 291 RESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSKMFTV 350 G + L+D+ LD R L L +QVF +A + + + ++ ++TV Sbjct: 314 ISRGAAPVLLLDEPFVHLDAAHRSALGEALHRGGAQVFCTATERDQLAALG--DAAIWTV 371 Query: 351 EKGKI 355 +G + Sbjct: 372 GEGAL 376 >UniRef50_C5SHV9 DNA replication and repair protein recF n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SHV9_9CAUL Length = 374 Score = 209 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 88/371 (23%), Positives = 138/371 (37%), Gaps = 18/371 (4%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + DFR+ + D+ LS +L G NG+GKT+ LEAI L GR R + + Sbjct: 4 RIHALSLTDFRSYDRLDVDLSGRSLYLFGPNGAGKTNFLEAISVLNPGRGLRGAAVSDLG 63 Query: 62 R-----HEQEAFVLHGRLQGEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELAHLMPM 114 R + A+ + L+ E + IG D + VRID L + + Sbjct: 64 RRLPQEAKGRAWGVSVELKSAEDDIRIGTGSDPRSLEKRLVRIDQQTVP-AGRLLDHIRL 122 Query: 115 QLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-Q 173 +TP + R F D F P T S ++ L++R L Q Sbjct: 123 VWLTPAQDRIFLEARAERLRFFDRLVFAATPSHATTVSAYEKALRERLKLLVQGPADAVW 182 Query: 174 LRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQF----LPEFSLTFSFQRGWEKETE 229 L ++ L ++ R + + A++ F L + + T Sbjct: 183 LDALEERLAEAGSEMIGARRAALSDLQAEIEAHESAFPKADLGLINEASDARERETLNTA 242 Query: 230 YAEVLERNFERDRQLTYTAHGPHKADLRIRA--DGAPVEDTLSRGQLKLLMCALRLAQGE 287 E R RD + GPH+ DL + P D S G+ K L+ L LAQG Sbjct: 243 LREGFARARARDSAAGRSLFGPHRTDLSVFHREKDRPAAD-CSTGEQKALVLNLILAQGS 301 Query: 288 FLTRESGRR-CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENSK 346 L+R + L+D+ A+ LD RR L Q + ++ Sbjct: 302 RLSRVKSAPNPVVLLDEVAAHLDPIRRAALFDETDRLGLQTLFTGTDESLFDGLAGRALG 361 Query: 347 MFTVEKGKITD 357 + VE G+ + Sbjct: 362 V-RVEGGQWVE 371 >UniRef50_B0T360 DNA replication and repair protein recF n=60 Tax=Alphaproteobacteria RepID=RECF_CAUSK Length = 392 Score = 207 bits (526), Expect = 7e-52, Method: Composition-based stats. Identities = 89/371 (23%), Positives = 133/371 (35%), Gaps = 31/371 (8%) Query: 3 LTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVIR 62 L L + DFR+ E A L +L GANG+GKT++LEAI L G+ R + V R Sbjct: 6 LLSLTLTDFRSYERATLRPDGASVYLFGANGAGKTNLLEAISLLSPGKGLRGSSLIEVGR 65 Query: 63 H--EQ---EAFVLHGRLQ------GEERETAIGLTKDKQG--DSKVRIDGTDGHKVAELA 109 + A+ + + G++ +G + G VRIDG LA Sbjct: 66 RLPGEATGRAWAVAAETEAPQTDFGQDEPVRLGTGVELAGAARRIVRIDGETVPPGR-LA 124 Query: 110 HLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVT 169 + +TP L RR F D F EP + + ++R L Sbjct: 125 DHVRPIWLTPAQDRLFLEAASERRRFFDRLVFAGEPAHAGHANAYDKAQRERMRLLTDAA 184 Query: 170 RYE------QLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTFSFQ-- 221 L + L ++ RA + A++ + P L + + Sbjct: 185 ESGQPADAVWLTALEARLGAAGALMANARARTLMALQAEIDSRGDRPFPRARLALTGEWE 244 Query: 222 -------RGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAP-VEDTLSRGQ 273 E E A L RD GPH+ DL I S G+ Sbjct: 245 KLALVGVEIAEIEARLAAALAAARPRDGAAGRALTGPHRGDLAIHHVDKDRPAAECSTGE 304 Query: 274 LKLLMCALRLAQGEFLTRESGRR-CLYLIDDFASELDDERRGLLASRLKATQSQVFVSAI 332 K L+ L LAQ L+R + L+D+ A+ LD +RR LA + A Q F++ Sbjct: 305 QKALILNLVLAQAARLSRAKDAPNPILLLDEVAAHLDLKRRAALADEITALGLQAFLTGT 364 Query: 333 SAEHVIDMSDE 343 + Sbjct: 365 DQSLFDHLKGR 375 >UniRef50_Q3YT59 DNA replication and repair protein recF n=6 Tax=Anaplasmataceae RepID=Q3YT59_EHRCJ Length = 372 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 132/359 (36%), Gaps = 13/359 (3%) Query: 2 SLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIYTLGHGRAFRSLQIGRVI 61 + L + +FRN +L S L+G NG+GKT++LEAI L G R + + Sbjct: 8 YINNLRLVNFRNYSNLELDTSSKSVVLLGKNGAGKTNILEAISLLSKGTGIRGVNTESMQ 67 Query: 62 RHEQEA-FVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDGHKVAELAHLMPMQLITPE 120 ++ + L ++ + I ++++ + + + + L ++ + + P+ Sbjct: 68 NSTSDSPWSLSYQIHTQNGIYPIVISRNNKQRNIIISN--KSQNYITLHKIISITWLIPQ 125 Query: 121 GFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQRNAALRQVTRYE-QLRPWDK 179 + R F D + + + + ++R+ L + L + Sbjct: 126 LDHIFLKSQSERLRFFDRITHIFDTKYASYIIKYNKAKQERSRLLHNNSTDNFWLSSLES 185 Query: 180 ELIPLAEQISTWRAEYSAGIAADMAD------TCKQFLPEFSLTFSFQRGWEKETEYAEV 233 + I+ R + + ++ K + S F + Y E Sbjct: 186 IIAENGINIARTRFNVMQILQSSLSQNSHSNAFFKAVIKIQSQVFDLLDQEDSIELYKEH 245 Query: 234 LERNFERDRQLTYTAHGPHKADLR-IRADGAPVEDTLSRGQLKLLMCALRLAQGEFLTRE 292 L++N +D + G H + + + + + S G+ K+L+ +L L+ + Sbjct: 246 LKKNRAKDSLSNLVSFGVHNDNFQIFHLEKTLIANNCSTGEQKILLLSLILSSVIA-KQN 304 Query: 293 SGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISAEHVIDMSDENS-KMFTV 350 G + L+DD S LD + L + + QV+++ I K F + Sbjct: 305 IGEYPILLLDDVMSHLDAFHQEKLIETIINIKCQVWLTDIDLTQQNFAKYREYFKFFHI 363 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.146 0.391 Lambda K H 0.267 0.0448 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,099,123,210 Number of Sequences: 3077464 Number of extensions: 88616195 Number of successful extensions: 488673 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 3914 Number of HSP's successfully gapped in prelim test: 6161 Number of HSP's that attempted gapping in prelim test: 465953 Number of HSP's gapped (non-prelim): 21200 length of query: 357 length of database: 1,040,396,356 effective HSP length: 130 effective length of query: 227 effective length of database: 640,326,036 effective search space: 145354010172 effective search space used: 145354010172 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 94 (40.7 bits)