BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (332 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Ta... 453 e-126 UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein p... 325 2e-87 UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=... 310 5e-83 UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacter... 300 5e-80 UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clo... 288 2e-76 UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel... 275 2e-72 UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=... 266 7e-70 UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm... 263 7e-69 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 257 5e-67 UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding... 252 1e-65 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 224 3e-57 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 222 1e-56 UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clo... 218 3e-55 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 217 5e-55 UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostri... 213 9e-54 UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=... 211 2e-53 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 208 2e-52 UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachy... 207 4e-52 UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=... 204 4e-51 UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=... 197 6e-49 UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clo... 196 1e-48 UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clo... 194 4e-48 UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostri... 194 5e-48 UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=... 193 6e-48 UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostri... 192 1e-47 UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=... 192 2e-47 UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette... 189 8e-47 UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic g... 189 1e-46 UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=... 187 3e-46 UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=... 186 1e-45 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 186 1e-45 UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=... 184 3e-45 UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=... 184 5e-45 UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=... 176 1e-42 UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcri... 175 2e-42 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 174 3e-42 UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clo... 174 3e-42 UniRef50_B1QV54 ABC-type sugar transport system, periplasmic com... 174 6e-42 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 173 6e-42 UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=... 173 1e-41 UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotro... 171 3e-41 UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=... 169 1e-40 UniRef50_A6M0H3 D-galactose-binding periplasmic protein n=2 Tax=... 164 6e-39 UniRef50_C0BEZ2 Putative uncharacterized protein n=1 Tax=Coproco... 162 2e-38 UniRef50_A9KK36 Periplasmic binding protein/LacI transcriptional... 161 3e-38 UniRef50_C5RHD6 D-galactose-binding periplasmic protein n=1 Tax=... 159 9e-38 UniRef50_C5RHA5 D-galactose-binding periplasmic protein n=2 Tax=... 154 5e-36 UniRef50_C5RNR8 Putative galactoside ABC transporter n=1 Tax=Clo... 153 7e-36 UniRef50_C5RF54 D-galactose-binding periplasmic protein n=1 Tax=... 150 5e-35 UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=... 150 8e-35 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 139 1e-31 UniRef50_C5RJJ5 D-galactose-binding periplasmic protein n=3 Tax=... 139 2e-31 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 137 5e-31 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 137 6e-31 UniRef50_A6LWC0 D-galactose-binding protein n=7 Tax=Clostridium ... 137 6e-31 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 136 8e-31 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 133 8e-30 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 132 2e-29 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 132 2e-29 UniRef50_C4GL06 Putative uncharacterized protein n=1 Tax=Kingell... 125 1e-27 UniRef50_C5RMK4 D-galactose-binding periplasmic protein n=2 Tax=... 125 2e-27 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 125 3e-27 UniRef50_C5RPN7 D-galactose-binding protein n=1 Tax=Clostridium ... 124 4e-27 UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic com... 124 4e-27 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 122 1e-26 UniRef50_UPI0001C359CF galactose ABC transporter, periplasmic ga... 121 4e-26 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 120 5e-26 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 119 2e-25 UniRef50_A6BKJ6 Putative uncharacterized protein n=3 Tax=Firmicu... 118 3e-25 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 116 1e-24 UniRef50_Q08255 Glucose/galactose-binding lipoprotein n=5 Tax=Tr... 115 2e-24 UniRef50_C2L0L6 Galactoside ABC superfamily ATP binding cassette... 114 5e-24 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 114 7e-24 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 113 1e-23 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 110 5e-23 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 110 8e-23 UniRef50_C0D489 Putative uncharacterized protein n=1 Tax=Clostri... 110 8e-23 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 107 6e-22 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 107 7e-22 UniRef50_Q2CJV7 Putative rhizopine uptake ABC transporter peripl... 106 1e-21 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 106 1e-21 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 104 4e-21 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 102 2e-20 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 99 2e-19 UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic com... 98 4e-19 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 96 2e-18 UniRef50_Q8GBR5 Putative mglB homolog n=1 Tax=Treponema maltophi... 96 2e-18 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 95 4e-18 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 92 2e-17 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 91 4e-17 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 91 5e-17 UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic sol... 90 1e-16 UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=... 89 1e-16 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 89 2e-16 UniRef50_C9L3Z0 Galactose/glucose-binding lipoprotein n=5 Tax=Fi... 89 2e-16 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 89 2e-16 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 89 3e-16 UniRef50_Q11DN9 D-xylose ABC transporter, periplasmic substrate-... 89 3e-16 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 86 1e-15 UniRef50_A6LYJ2 ABC-type sugar transport system, periplasmic com... 86 2e-15 UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 T... 86 2e-15 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 86 3e-15 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 85 3e-15 UniRef50_C8W712 ABC-type sugar transport system periplasmic comp... 84 6e-15 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 84 9e-15 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 84 1e-14 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 82 3e-14 UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional... 82 4e-14 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 81 6e-14 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 80 1e-13 UniRef50_Q47NL4 Solute-binding protein n=26 Tax=Actinomycetales ... 80 1e-13 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 79 2e-13 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 79 3e-13 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 78 5e-13 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 77 9e-13 UniRef50_A6WFF0 Solute-binding protein n=1 Tax=Kineococcus radio... 75 2e-12 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 75 3e-12 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 75 5e-12 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 74 9e-12 UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional... 74 1e-11 UniRef50_A6TKU8 ABC-type sugar transport system periplasmic comp... 73 1e-11 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 72 2e-11 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 72 2e-11 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 72 2e-11 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 72 3e-11 UniRef50_C7Q046 Solute-binding protein n=4 Tax=Actinomycetales R... 72 3e-11 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 72 4e-11 UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional... 71 4e-11 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 71 4e-11 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 71 5e-11 UniRef50_P77269 ABC transporter periplasmic-binding protein yphF... 71 7e-11 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 70 8e-11 UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminoc... 70 9e-11 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 70 1e-10 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 70 1e-10 UniRef50_B0PGT6 Putative uncharacterized protein n=3 Tax=Clostri... 70 1e-10 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 70 1e-10 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 70 1e-10 UniRef50_A6X2R7 Periplasmic binding protein/LacI transcriptional... 69 2e-10 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 69 3e-10 UniRef50_P25548 Multiple sugar-binding periplasmic receptor chvE... 69 3e-10 UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE... 68 4e-10 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 68 4e-10 UniRef50_A9KQP6 Putative solute-binding component of ABC transpo... 68 5e-10 UniRef50_UPI0001C35F9C putative sugar uptake ABC transporter, so... 67 6e-10 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 67 7e-10 UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkh... 67 9e-10 UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobact... 67 1e-09 UniRef50_Q0SK74 ABC sugar transporter, periplasmic solute-bindin... 67 1e-09 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 67 1e-09 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 66 1e-09 UniRef50_B5J4J1 Putative uncharacterized protein n=1 Tax=Octadec... 66 2e-09 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 65 2e-09 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 65 3e-09 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 64 7e-09 UniRef50_D1C9K0 ABC-type xylose transport system periplasmic com... 64 9e-09 UniRef50_C1RM32 Monosaccharide ABC transporter substrate-binding... 64 9e-09 UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding... 63 1e-08 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 63 1e-08 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 63 2e-08 UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional... 63 2e-08 UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional... 62 2e-08 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 62 3e-08 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 62 3e-08 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 62 3e-08 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 62 3e-08 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 62 4e-08 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 61 5e-08 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 61 6e-08 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 61 6e-08 UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional... 61 7e-08 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 60 9e-08 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 60 9e-08 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 60 1e-07 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 60 1e-07 UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate bin... 60 1e-07 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 60 1e-07 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 60 1e-07 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 60 1e-07 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 60 1e-07 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 60 1e-07 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 60 1e-07 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 60 2e-07 UniRef50_C8VY22 Periplasmic binding protein/LacI transcriptional... 59 2e-07 UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidi... 59 2e-07 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 59 2e-07 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 59 2e-07 UniRef50_C7IGF5 ABC-type sugar transport system periplasmic comp... 59 2e-07 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 59 3e-07 UniRef50_D2Q8V2 ABC transporter (Substrate-binding protein) n=2 ... 59 3e-07 UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=B... 59 4e-07 UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0... 58 4e-07 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 58 4e-07 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 58 4e-07 UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional... 58 5e-07 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 58 5e-07 UniRef50_B1VWK1 Putative ABC transporter solute-binding protein ... 58 6e-07 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 57 7e-07 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 57 8e-07 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 57 8e-07 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 57 9e-07 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 57 1e-06 UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding... 57 1e-06 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 57 1e-06 UniRef50_B1BAU0 Putative transcriptional regulator, periplasmic ... 57 1e-06 UniRef50_C9Z5F4 Putative lipoprotein n=2 Tax=Streptomyces RepID=... 57 1e-06 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 57 1e-06 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 56 1e-06 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 56 2e-06 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 56 2e-06 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 56 2e-06 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 56 2e-06 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 56 2e-06 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 55 3e-06 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 55 3e-06 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 55 3e-06 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 55 3e-06 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 55 3e-06 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 55 3e-06 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 55 3e-06 UniRef50_B1Y1T3 ABC sugar transporter, periplasmic solute-bindin... 55 4e-06 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 55 4e-06 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 54 7e-06 UniRef50_B9MLQ1 Monosaccharide-transporting ATPase n=1 Tax=Anaer... 54 8e-06 UniRef50_A6C6N8 ABC transporter sugar-binding protein n=3 Tax=Ba... 54 8e-06 UniRef50_C5RKU9 D-galactose-binding periplasmic protein n=1 Tax=... 54 9e-06 UniRef50_C5ERQ0 Predicted protein n=1 Tax=Clostridiales bacteriu... 54 1e-05 UniRef50_A6TAQ0 Putative uncharacterized protein n=1 Tax=Klebsie... 54 1e-05 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 53 1e-05 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 53 1e-05 UniRef50_B0PDL3 Putative uncharacterized protein n=1 Tax=Anaerot... 53 1e-05 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 53 1e-05 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 53 1e-05 UniRef50_D1VIA6 ABC-type sugar transport system periplasmic comp... 53 1e-05 UniRef50_A9B1C5 Solute-binding protein n=1 Tax=Herpetosiphon aur... 53 2e-05 UniRef50_A0JW81 ABC-type sugar transport system periplasmic comp... 53 2e-05 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 53 2e-05 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 52 2e-05 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 52 2e-05 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 52 2e-05 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 52 2e-05 UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroi... 52 2e-05 UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus... 52 3e-05 UniRef50_C7MZ66 Monosaccharide-binding protein n=1 Tax=Saccharom... 52 3e-05 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 52 3e-05 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 52 4e-05 UniRef50_A8L0L2 Solute-binding protein n=5 Tax=Bacteria RepID=A8... 52 4e-05 UniRef50_B3DR21 ABC-type xylose transport system periplasmic com... 52 4e-05 UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding... 52 4e-05 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 52 4e-05 >UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Tax=Bacteria RepID=DGAL_HAEIN Length = 331 Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/331 (67%), Positives = 266/331 (80%), Gaps = 3/331 (0%) Query: 3 KKVLTLSAVMASMLFGAAA--HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 KK LS V ++ G+A+ AAD RIGVTIYKYDDNFMS++RK I+++AK ++LL Sbjct: 2 KKTAVLSTVAFAIALGSASASFAADNRIGVTIYKYDDNFMSLMRKEIDKEAKVVGGIKLL 61 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MNDSQN QS QNDQ+D+LL+KGVKALAINLVDPAAA T+I KA+ N+PVVFFNK+P K Sbjct: 62 MNDSQNAQSIQNDQVDILLSKGVKALAINLVDPAAAPTIIGKAKSDNIPVVFFNKDPGAK 121 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A+ SY++AYYVGTD KESG+IQGDLIAK W AN DLNKDG+IQFVLLKGEPGHPDAE Sbjct: 122 AIGSYEQAYYVGTDPKESGLIQGDLIAKQWKANPALDLNKDGKIQFVLLKGEPGHPDAEV 181 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT YVI+ELN KGI+TEQL +DT MWD A AKDK+DAWLS AN IEV+I+NND MA+G Sbjct: 182 RTKYVIEELNAKGIQTEQLFIDTGMWDAAMAKDKVDAWLSSSKANDIEVIISNNDGMALG 241 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+EA KAH K +P+FGVDALPEAL L+ G LAGTVLND+ NQ KA L+ NLA GK Sbjct: 242 ALEATKAHGK-KLPIFGVDALPEALQLISKGELAGTVLNDSVNQGKAVVQLSNNLAQGKS 300 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A +GT W++ ++VVR+PYVGVDKDNL +F K Sbjct: 301 ATEGTKWELKDRVVRIPYVGVDKDNLGDFLK 331 >UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein precursor n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF79F Length = 333 Score = 325 bits (832), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 164/325 (50%), Positives = 228/325 (70%), Gaps = 5/325 (1%) Query: 8 LSAVMASMLFGAAAHAADT--RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 L+A + +++ GA A A + RIGVTIYKYDDNFM ++RK + ++ ++ MND+Q Sbjct: 9 LNAFVYTLMLGANASYAQSEPRIGVTIYKYDDNFMMLMRKEMNKEMANFSHLKWFMNDAQ 68 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 N Q KQ QI+ LL V LA+N+V + T++EKA+ NVPVVFFN+ +AL+SY Sbjct: 69 NSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEKAKLSNVPVVFFNRSSDNQALESY 128 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 DKAY+V +D KE+G IQG+LIAK W +N +DLNKDG++QFVLLKGEP AE R+ V Sbjct: 129 DKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNKDGKLQFVLLKGEPSDVSAE-RSQAV 187 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 ++ LN +G++ E++ DTA W A++KM+ WL A +IEVVI+NND MA+GA++AL Sbjct: 188 VESLNQQGVQAEEIYSDTARWRRTLARNKMNEWLVENRAAEIEVVISNNDEMAIGALDAL 247 Query: 246 KAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 AH K +P+FG+DALPE LAL+K G +AGTVLND++ QAKA L NLA GK A T Sbjct: 248 NAHEK-RLPIFGIDALPETLALMKKGEIAGTVLNDSSAQAKAVVKLVSNLAQGKPALKDT 306 Query: 306 NWKI-DNKVVRVPYVGVDKDNLAEF 329 W+ +K + +P++G+DK+NL +F Sbjct: 307 QWESHSSKTIYLPHIGIDKENLGQF 331 >UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=Actinobacillus RepID=A3MZG8_ACTP2 Length = 323 Score = 310 bits (793), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 149/326 (45%), Positives = 228/326 (69%), Gaps = 4/326 (1%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 K L + ++ + ++ A DT +GV++Y+YDDNF+ ++ + P + LLMND Sbjct: 2 KKLAICSLAVGISLSSSVIAQDT-LGVSLYQYDDNFIRLMHDELISYTSENPSLSLLMND 60 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 +QN Q QN+Q+ L+ V LA+NLVDP A TVI KA+ N+P++ FNK+P KA++ Sbjct: 61 AQNSQFVQNNQVQTLVNHKVDVLAVNLVDPNAWATVIGKAKDANLPIILFNKDPGAKAIN 120 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 SY K YYVG++ +E+G Q +IA HW +++ DLN DG++Q+ +LKGE GHPDAE RT Sbjct: 121 SYKKVYYVGSNPEEAGKAQAKMIANHWKSSEALDLNHDGKMQYAVLKGEVGHPDAEKRTK 180 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 VI+EL +GIKTEQL L++A+W+ AK K++AWLS P N IEV+I+NND+MA+GA+E Sbjct: 181 AVIEELKTQGIKTEQLALESAVWNKEIAKAKVNAWLSTPQ-NNIEVIISNNDSMAIGALE 239 Query: 244 ALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 + +K ++P++GVDA PEAL L++ G LAGTV ND +Q++A D ++ LA G+ + Sbjct: 240 VVTEKDK-ALPIYGVDATPEALNLIRKGKLAGTVTNDWRSQSRAIIDFSRLLAKGE-LPE 297 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAEF 329 + WK++N+V+R+P + +D+ N+++F Sbjct: 298 NSQWKLENRVLRIPAMSIDRSNISDF 323 >UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacteria RepID=C0QYC2_BRAHW Length = 350 Score = 300 bits (767), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 163/307 (53%), Positives = 222/307 (72%), Gaps = 11/307 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGVTIY+YDDNFMS R+ IE + + L++NDSQN+Q++QNDQ+DV++ K KALA Sbjct: 39 IGVTIYRYDDNFMSFYRRNIE--TRISGKANLIINDSQNNQAQQNDQVDVMIQKDSKALA 96 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 INLVDP AA T+I+KA+ +N+PVVFFNK+PS +A+ SYDK +YVGT +ESG +QG ++ Sbjct: 97 INLVDPQAAQTIIDKAKTKNIPVVFFNKQPSAEAMASYDKTWYVGTTPEESGDMQGKIVV 156 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 W AN WD N DG IQ+ LLKGEPGHPDAEART++V + + G+K E+L+ TAMWD Sbjct: 157 DTWKANPAWDKNGDGIIQYALLKGEPGHPDAEARTSHVTLYVTNNGLKVEKLEEQTAMWD 216 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA--HNKSS-----IPVFGVDA 260 TA+AKD +DAW+ +K+E + NNDAMA+GA++A++A +NK IP+ GVDA Sbjct: 217 TAKAKDIVDAWIQK-YGDKLEYIFCNNDAMALGALQAVQALGYNKEGDTTKFIPIVGVDA 275 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN-KVVRVPYV 319 +P+ + +K G + G+VLND Q++A D+ N+A GK DGT W +D K VRVPYV Sbjct: 276 IPDMINEIKKGTVVGSVLNDPVGQSQALVDITLNVAAGKDPLDGTTWTLDEVKAVRVPYV 335 Query: 320 GVDKDNL 326 + KDN+ Sbjct: 336 PITKDNI 342 >UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT8_CLOCL Length = 353 Score = 288 bits (738), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 152/307 (49%), Positives = 201/307 (65%), Gaps = 12/307 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDA--KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 +IG IYKYDD F+S V +++E+ + KAA +VQ DSQNDQS+Q QID ++ V+ Sbjct: 43 KIGAVIYKYDDTFISYVSESMEETSFGKAALNVQ----DSQNDQSRQFQQIDEMIDDKVR 98 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 L +NLV+P AA T+I KA+ VPV+FFNKEP L SY A+YVG DS E+GI+QG Sbjct: 99 VLVVNLVEPTAAETIINKAKNAEVPVIFFNKEPEASVLKSYSNAWYVGADSSEAGILQGK 158 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 +IAK W N WD +KDG + +VLLKGEPGHPDAE R YVI E+ + GI+ +L A Sbjct: 159 MIAKLWRKNLQWDKDKDGILSYVLLKGEPGHPDAEIRAKYVIDEIKNSGIQVRELDSHYA 218 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPVFGVDA 260 MWD +A+ KMD W++ N IE VI+NND MA+GA+ +L+ + S +PV GVDA Sbjct: 219 MWDEVRARGKMDQWIA-QFGNNIEFVISNNDTMAIGAINSLEKNGYMSGDNFVPVVGVDA 277 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI-DNKVVRVPYV 319 + EA+ + G + GTVLNDA Q A +LA N + G GT + + +K VRVPYV Sbjct: 278 IQEAIQEITEGKMVGTVLNDAKKQGAAVINLAINASKGDDILKGTAFVMGSDKSVRVPYV 337 Query: 320 GVDKDNL 326 + KDNL Sbjct: 338 AITKDNL 344 >UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY38_9FIRM Length = 339 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/335 (45%), Positives = 215/335 (64%), Gaps = 22/335 (6%) Query: 3 KKVLTLSAVMASMLFGAA----------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 KKV+T A+ LF A A + +IGV YKYDD +MS VR A+E+ AK Sbjct: 2 KKVITWCAIFC--LFCLALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAK 59 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 +V+L++NDSQNDQ+KQNDQIDV++ KGV L IN+VD AA V++KA+ N+P+V Sbjct: 60 EHSNVELIVNDSQNDQAKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVL 119 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 FN+EP+ + +YDKA +VGT +KE+GIIQG +IA+ W +++ +D N +G++ +V+L G+ Sbjct: 120 FNREPATDVVKAYDKARFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGD 179 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 P +P+A ART Y + L + I+ +L A WD +AK DAWL+ +A+ I+V+I+ Sbjct: 180 PENPEAIARTKYAVDTLTEAKIEVNKLGDQVANWDPDKAKTATDAWLA-KDADNIDVIIS 238 Query: 233 NNDAMAMGAVEALK-------AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 NND+MA GA+ AL+ A IPVFGVDA EA+ L+ G + GTV DA A Sbjct: 239 NNDSMASGAIAALQGAGFNTDAKADKKIPVFGVDATEEAVDLIARGIMTGTVKQDAEGMA 298 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 KA F L+ N GK DGT++K D+ VR+PY Sbjct: 299 KAVFALSYNAGQGKDFLDGTDYKYDDTQVAVRIPY 333 >UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2X7_9CLOT Length = 348 Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 140/302 (46%), Positives = 198/302 (65%), Gaps = 11/302 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++GV +YK+DD ++S VR+++E+ PD V+ D + DQ+ QND ID LL K V Sbjct: 43 KVGVCLYKFDDTYISTVRQSLEKIQSENPDKVEFTFYDGKGDQATQNDSIDTLLQKDVDL 102 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 L +NLVD AA TVI+K + PVV FN+EPS ++ +YDKA +VGT++KE+G++QG++ Sbjct: 103 LLVNLVDTGAAPTVIDKIKTAEKPVVLFNREPSADSIKAYDKAIFVGTNAKEAGVMQGEI 162 Query: 146 IAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 ++K W ++ D N DG +Q+V+LKGEP +P+A ART Y + LNDKG+KTE+L L Sbjct: 163 LSKVWEKDKAAIDKNGDGVLQYVMLKGEPDNPEAVARTQYSVSTLNDKGVKTEELALQVC 222 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS------SIPVFGV 258 WD A A++ +AW S +KIE VIANND MA GA+ AL+A + +IPV GV Sbjct: 223 NWDQALAQNATEAWFS-KFGDKIEAVIANNDGMAQGAIAALQAQGYNNGDAAKTIPVVGV 281 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRV 316 DA A L+ G + G+VL DA AKA ++ NLA GK A +GT++K D+ VR+ Sbjct: 282 DATAAAQDLIGKGFMLGSVLQDAEGMAKALYETGMNLAGGKSAVEGTSYKFDDTGVAVRI 341 Query: 317 PY 318 PY Sbjct: 342 PY 343 >UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein n=15 Tax=Firmicutes RepID=C6CXV0_PAESJ Length = 366 Score = 263 bits (671), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 149/307 (48%), Positives = 203/307 (66%), Gaps = 9/307 (2%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 +GV IYK+DD FM+ VR AIE ++ V ++ DSQN Q QND++D+ + K A+A Sbjct: 61 VGVAIYKFDDTFMTGVRNAIEAASQGVAKVDIV--DSQNSQPTQNDKVDLFITKKYNAMA 118 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 IN VD AA +I+KA+ N PVVFFN+EP + ++ +D YYVG ++ESG + G+LI Sbjct: 119 INAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAEESGTMSGELII 178 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 +W A+ D NKDG++Q+++LKGEPGH DAE RT Y I+ + D GI E+L DTAMWD Sbjct: 179 DYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGIGVEKLAEDTAMWD 238 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA----HNKSSIPVFGVDALPE 263 +A+DKM +LS + +KIE V+ANND MA+GA+EALKA + +PV GVDA Sbjct: 239 RVKAQDKMATFLSA-HGDKIEAVLANNDDMALGAIEALKAAGYFKDGKFMPVVGVDATAA 297 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD-GTNWKI-DNKVVRVPYVGV 321 AL + G L GTVLNDA NQ AT LA LA+G+ + T + I D+K V VPY + Sbjct: 298 ALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFDITDSKYVWVPYKKI 357 Query: 322 DKDNLAE 328 KDN+++ Sbjct: 358 TKDNMSD 364 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 139/314 (44%), Positives = 197/314 (62%), Gaps = 10/314 (3%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAI-----EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 + +IGV +YK+DD F+S V+ AI E+ + + + D Q Q+ QNDQ+D + Sbjct: 41 EIKIGVALYKFDDTFISSVKDAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDTFI 100 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 +G +A+N+VD AA +I+KA+ +PVVFFN+EP + + +D+ YYVG ++ESG Sbjct: 101 TQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEESG 160 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 IQG++ A ++ AN D NKDG+IQ+V+L+GEPGH DA RT Y IK L G + ++L Sbjct: 161 TIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQVDKL 220 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPV 255 DTA+W A ++KM AW+S +KIE+V+ANND MA+GA+EALKA S IPV Sbjct: 221 ASDTALWQRANGQEKMAAWISA-FGDKIELVLANNDDMALGAIEALKAAGYLSDGKFIPV 279 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 GVDA A +K+G L GTVLNDA Q K FD+A LA + A+ D K + Sbjct: 280 IGVDATAPAKDSLKAGLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGITDGKYLW 339 Query: 316 VPYVGVDKDNLAEF 329 +PY V K+N+ +F Sbjct: 340 IPYQKVTKENVDKF 353 >UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1Q8B1_9SPIR Length = 344 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/334 (42%), Positives = 207/334 (61%), Gaps = 18/334 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAA--HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K+VL L ++AS + + + + IG+TIY+ DD F + ++ IE+ + Sbjct: 1 MEKRVLLLLIILASFIVISCSDKKTNNNFIGITIYRTDDPFANSLKNNIEKFISGR--AK 58 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 ++NDSQN+Q+ QN QID ++KG K L INLVD AA +++KA+ + P++ FNK P Sbjct: 59 YIVNDSQNNQTTQNSQIDNYISKGAKVLVINLVDTQAAQDIVDKAKNSDTPIILFNKSPD 118 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++SYDK +YVGT S+E+ IQG +IA W AN WD N DG+IQ V+L+GEPGH D Sbjct: 119 PSVMNSYDKVWYVGTLSEEAVNIQGKIIADSWKANPSWDKNGDGKIQCVILEGEPGHADT 178 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN-----KIEVVIAN 233 + RT +I + + GI+ E L TAMW+ +AK+ +D W+S N N KIE + +N Sbjct: 179 KIRTENLISFIENSGIELEILDKKTAMWNRDRAKNIVDFWMSNHNDNEDSDTKIEYIFSN 238 Query: 234 NDAMAMGAVEALK--AHNKSS----IPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 ND MA+GA+++++ +NK IP+ G+DA+ E + +++G + GTVLND+ QAKA Sbjct: 239 NDEMALGALKSVQGFGYNKGESNKFIPIVGIDAINETIKEIENGNIVGTVLNDSLTQAKA 298 Query: 288 TFDLAKNLADGK--GAADGTNWKIDN-KVVRVPY 318 DLA NL + GT W +DN K VRV Y Sbjct: 299 ISDLAVNLFKNETLNPILGTIWTLDNTKSVRVHY 332 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 224 bits (572), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 124/310 (40%), Positives = 191/310 (61%), Gaps = 10/310 (3%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD---VQLLMN--DSQNDQSKQNDQIDVLL 79 + +IGVT+YK DD F+S + K IE AK + ++++N D++ + Q++Q+D + Sbjct: 47 EIKIGVTLYKQDDAFISEISKNIEDIAKEKENQGKYKIIVNVADAKGNLINQSNQVDKFV 106 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 A+ + +N+VD AA +I+KA+ N+P+VFFN+EP + ++ ++K YYVG D+++SG Sbjct: 107 AQNYDVICVNMVDRTAASMIIDKAKSANIPIVFFNREPVEEDMERWNKLYYVGADAQQSG 166 Query: 140 IIQGDLIAKHWAA-NQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 +Q ++I + N+ D N DG+IQ+V+L+GE GH D+ RT Y IK + GI+ E+ Sbjct: 167 EMQANIIINAYKKDNKMVDKNGDGKIQYVMLEGEQGHQDSLIRTEYCIKTITQNGIELEK 226 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIP--VF 256 L DTA W +AQA KM W+ +KIEVV +NND MA+GA+ A+ N V Sbjct: 227 LADDTANWQSAQATTKMSQWIKNF-GDKIEVVFSNNDEMALGAINAINDANIGGKKPLVV 285 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G+D LP+AL VK+G++ GT+LND+ QA A F+LA LA G + K +R Sbjct: 286 GIDGLPKALEAVKNGSMIGTILNDSKKQANAIFNLAYTLA-SHGNVNSIEGLEKGKYIRT 344 Query: 317 PYVGVDKDNL 326 P+ V DN+ Sbjct: 345 PHAEVTSDNV 354 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 173/280 (61%), Gaps = 8/280 (2%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAP---DVQLLMN--DSQNDQSKQNDQIDVLLAK 81 RIGVT+Y+ D F+S++ + AKA +V++ +N D +Q QN+Q+D LA+ Sbjct: 44 RIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITLNILDGTGNQGTQNEQVDRFLAQ 103 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 G A+ +N VD AA +I+KAR ++PV+FFN+EP + + + YYVG+D +E+G + Sbjct: 104 GYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVGEDMQRWQNVYYVGSDPREAGDM 163 Query: 142 QGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 QG ++ + N D N DG+IQ+V+L+GEPGH DA RT I L GI E+L Sbjct: 164 QGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDATLRTESCIAALTSAGIDVEKLA 223 Query: 201 LDTAMWDTAQAKDKMDAWLSGPN-ANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF-GV 258 + A W AQA KM WL+ ++IEV+ NND MA+GA++A A S +PV G+ Sbjct: 224 SEPANWQRAQASAKMAQWLADEELRDRIEVIFCNNDDMALGAIDAYHAAEISELPVIVGI 283 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 DA P AL ++ G+LAGTV NDA QA+A FDLA L+ G Sbjct: 284 DATPPALMAIQDGSLAGTVRNDAQGQAQAIFDLAYALSTG 323 >UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1Q6_CLOB8 Length = 353 Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 209/351 (59%), Gaps = 29/351 (8%) Query: 3 KKVLTLSAVMA---SMLFGAAAHAADT----------RIGVTIYKYDDNFMSVVRKAIEQ 49 KK+L L +M ++L + A+T R V + +D + ++++++ E+ Sbjct: 5 KKILVLFTIMVMIINLLLNSNKVVANTKLTATEGRPVRASVLLRTLEDPYTALLKQSFEE 64 Query: 50 DAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKG-VKALAINLVDPAAAGTVIEKARGQN 107 K +++ D +NDQS QN ++ +L G + +NLVDP T++++ + +N Sbjct: 65 IQKNNQGNIEFTFYDCKNDQSLQNRNVNSILNAGNADIILLNLVDPTGVRTIVDRVKEKN 124 Query: 108 VPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDGQIQ 165 +P+ FN EP + + + SY KAY+VGT+ E+GI+QG+L++ W ++ D N D +Q Sbjct: 125 IPLGLFNIEPLNMETVKSYSKAYFVGTNPAEAGILQGELLSSLWNKDRTIIDKNGDNIMQ 184 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDA-WLSGPNA 224 +V+L G + +A RT Y + +ND GIKTE++ L W+ AKD MDA +LS N Sbjct: 185 YVMLMGPRNNLEAIGRTKYSVLSINDAGIKTEEIALRVCNWEENLAKDAMDALFLS--NG 242 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVL 278 NKIEV+I+NNDAMA+GA+EAL+ + +S IP+ GVD +P+A+ L+ G + G+V Sbjct: 243 NKIEVIISNNDAMAIGAIEALQKYGYNSGDKNRTIPIVGVDGIPKAIQLINQGIMTGSVP 302 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVG-VDKDNL 326 DA + A+AT+ + NL +G+ DGT++K D+ VR+PY G + DN+ Sbjct: 303 QDAASMAEATYLIGMNLVNGRPPLDGTSYKFDDTGVAVRIPYKGYISNDNI 353 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 217 bits (552), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 197/338 (58%), Gaps = 16/338 (4%) Query: 6 LTLSAVMASMLFGAAA-----HAADTRIGVTIYKYDDNFMSVVRKAIE-----QDAKAAP 55 + L+ +A+M+ G A +IGV IY+ DD F+S + ++E ++ K Sbjct: 11 ICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENAIKDKEEKLGK 70 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 V + + D++N QS QNDQ+D + KG A+ +N+VD A +++KA+ +P++FFN+ Sbjct: 71 KVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKEAGIPIIFFNR 130 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDGQIQFVLLKGEPG 174 EP + + +++ YYVGTD++E+G ++G ++A W + + D N DG++Q+V+L+GE Sbjct: 131 EPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKLQYVMLEGEQV 190 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 H D+ RT Y +K + +GI TE+L T W + A + M W+ G ++IEVV++NN Sbjct: 191 HQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWI-GQYGSQIEVVLSNN 249 Query: 235 DAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 D MAMGA+EAL + S V G+D + L + G + GTV+NDA QA++ + Sbjct: 250 DEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEMEGTVMNDARGQAESILGI 309 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 A A+GK ++ + VRVP+ V DN+ EF Sbjct: 310 ACACAEGKDPKQEVP-ELKGQYVRVPHSPVTADNVQEF 346 >UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5KK65_9FIRM Length = 343 Score = 213 bits (541), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 194/347 (55%), Gaps = 20/347 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRI--------GVTIYKYDDNFMS----VVRKAIE 48 M KK L +A++ M+ +I GVT Y +D F+S ++ + Sbjct: 1 MKKKKLLAAAIVLCMVIQLLCACGKQKISMSDKVYVGVTCYDQNDTFLSELLVCFKEELN 60 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 K + + + ++ Q QNDQ+ L+ G L +NLVD A +I+ A+ +V Sbjct: 61 HLNKNGVETTVTVKNAAGSQRTQNDQVKELINAGCNVLCVNLVDRADPSEIIDVAKEHDV 120 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 P++FFN+EP + + +D+ YYVG D+K+SG++QG+L + N D NKDG+IQ+V+ Sbjct: 121 PIIFFNREPVAEDMRQWDRLYYVGADAKQSGVLQGELAVEMIRQNSQIDHNKDGKIQYVV 180 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+GE GH DA RT + LN GI+ E+L A W+ AQA+++M+ L G NKIE Sbjct: 181 LEGEAGHQDAIIRTENAVDTLNKNGIELEKLSYQIANWNRAQAQNRMEQML-GQYKNKIE 239 Query: 229 VVIANNDAMAMGAVEALKAHNKSS--IPVF-GVDALPEALALVKSGALAGTVLNDANNQA 285 +V+ANND MA+GA++A K N + +PVF G+D L V+ ++AGTV ND QA Sbjct: 240 LVLANNDDMALGALDAYKNLNYTEALLPVFIGIDGTDMGLKAVEDSSMAGTVYNDKEGQA 299 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNK-VVRVPYVGVDKDNLAEFSK 331 +A L+ L GK A + K N+ + +PY V K+N+ E+ K Sbjct: 300 RAIAKLSAALVIGKEAEE---IKFTNENYIYLPYSKVTKENVHEYLK 343 >UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=Clostridium botulinum RepID=B2TNA6_CLOBB Length = 352 Score = 211 bits (538), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/344 (37%), Positives = 202/344 (58%), Gaps = 28/344 (8%) Query: 1 MNKKVLTLSA---VMASMLFGA----AAHAAD------TRIGVTIYKYDDNFMSVVRKAI 47 M KK+L+++ VM M FG A+ ++ ++GV +YK++D ++S+++ ++ Sbjct: 1 MKKKLLSINMIIIVMILMFFGVNENIVANCSNFDSEKAAKVGVLLYKFNDEYISLLKNSL 60 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGT--VIEKAR 104 E+ K P+ V+ + D+ D+ KQN ++D LL + V L +NLVD + T V+++ + Sbjct: 61 EEIQKENPNKVEFIFLDAYGDEKKQNKELDKLLKEKVDLLLVNLVDTSEGSTQKVVDRIK 120 Query: 105 GQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDG 162 NVPV+FFN+EP S+ + SY+KA + + E+GI+QG +++ W N+ D NKD Sbjct: 121 ENNVPVIFFNREPISKIPIKSYEKAV-ILSRIPEAGILQGQIVSDLWNDNKKMIDKNKDN 179 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+V+L GE A +RT VIK + D GI+ ++L+ + WD AK + A L Sbjct: 180 IMQYVMLTGESSDLTAISRTKNVIKTIKDNGIEIQELEKKNSKWDRELAKQNI-ASLLYQ 238 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHN------KSSIPVFGVDALPEALALVKSGALAGT 276 NKIEV+IANNDAMA+GA+EAL+ N ++I V G+DA P+A L+ G +AGT Sbjct: 239 YGNKIEVIIANNDAMAIGAIEALQKQNYNNGDLNNTIIVVGIDATPKAKELINEGYMAGT 298 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 V D +A A + L NL GK + T +K D VR+PY Sbjct: 299 VFQDPKEEADALYTLGMNLISGKNPIENTQYKYDETGVTVRLPY 342 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 208 bits (529), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/346 (38%), Positives = 194/346 (56%), Gaps = 33/346 (9%) Query: 6 LTLSAVMASMLFGAAAHAA----------DTRIGVTIYKYDDNFMSVVRKAI-----EQD 50 L L +++A LFG ++ IGV IYK+DDNFM++ R+ + E Sbjct: 7 LILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELASYFKEVG 66 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 K +L + D + DQ+ Q +QI+ +A+G + N+VDP AAG++I A+ + +PV Sbjct: 67 EKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAKAKEIPV 126 Query: 111 VFFNKEPSRKALDSY-DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 VF N+EP + L+ + K YVG D+ +SG IQG +IA N+G D++ DG + ++ L Sbjct: 127 VFINREPETQELEIWPGKTTYVGADATQSGTIQGYMIAN--LENKG-DIDGDGSVSYITL 183 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQL-QLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 G+P + DA+ RT Y +K L +KG+KT L Q A WDTA+ ++ L NK+E Sbjct: 184 MGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANALE-QFGNKLE 242 Query: 229 VVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 VV ANND MA+GAV A++A + I V GVDA+P+A+ L+K G L GTVLND NQ+ Sbjct: 243 VVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLNDHFNQS 302 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 D+A L GK + W YVGV K AE + Sbjct: 303 HTAVDVALELLQGKDVS-AYYWH--------DYVGVTKPEEAELKR 339 >UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachyspira RepID=C0QYC4_BRAHW Length = 338 Score = 207 bits (527), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 116/307 (37%), Positives = 177/307 (57%), Gaps = 11/307 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGV +Y+YDD++M +++ IE++ + LLM DS N QS QN QID+ L K V LA Sbjct: 27 IGVALYRYDDSYMKFLKQYIEKNINR--NTSLLMVDSYNSQSTQNGQIDMFLQKNVNLLA 84 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 INLVD A V++K N PV+FFN+EP + + +YDK +Y+G S+E+G QG +IA Sbjct: 85 INLVDKTQAQKVLDKISINNKPVIFFNREPGLEVMKTYDKVWYIGGISEEAGYAQGRIIA 144 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 + W WD N+DG+IQ ++LKG+ D RT Y+ K ++ IK + L + M Sbjct: 145 ESWKDRMNWDKNEDGKIQCIILKGDLNDNDTVKRTEYMKKYISSNNIKLDILAEISTMGK 204 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSS-----IPVFGVDA 260 ++ M + L KIE +I NND +A+GA++ALK +N SS +P+ G+D Sbjct: 205 RDESTRIMKS-LILKYGKKIEYIICNNDYIALGALDALKEIGYNNSSRMLNYVPIVGIDG 263 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN-KVVRVPYV 319 +PE L + + + TV+ + QA+ ++ N+ GK DG + N K + +PY+ Sbjct: 264 IPECLEAINNYGIFATVMQNPKIQAETLCSVSSNIIGGKSPLDGLHISYYNEKYIVIPYI 323 Query: 320 GVDKDNL 326 + K NL Sbjct: 324 PITKYNL 330 >UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C4ZBY5_EUBR3 Length = 338 Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 120/311 (38%), Positives = 179/311 (57%), Gaps = 10/311 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAP----DVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 IGVT Y D F+ + + +++ + D+ + + D+ Q Q+DQ+ ++ G Sbjct: 28 IGVTCYDQKDTFIGELIETFKKECASLDTDKYDISMTIMDAAGSQRAQDDQVQEMIEDGC 87 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 L INL D +I A +++P++FFN+EP + L+ +DK YYVG +K+SG +QG Sbjct: 88 NVLCINLADRTDLSHIINAAMEKDIPIIFFNREPVDEDLNRWDKLYYVGAKAKQSGQMQG 147 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 +LIA + N G D N DG+IQ+V+L+GE GH DA RT V + + + G++ E+L Sbjct: 148 ELIADYIKNNPGVDKNGDGRIQYVILEGEMGHQDAIVRTESVTESMKNNGLQIEKLSCQI 207 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSSIP-VFGVDA 260 A W+ AQA+++M L G N IE+VIANNDAMA+GA++A + +S++P FGVD Sbjct: 208 ANWNRAQAQNRM-TQLIGQYKNSIELVIANNDAMALGAIDAYEKLGVTESNVPAFFGVDG 266 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 + L V+ LA TV ND QA A LA A G G+ ++ D K V +PY Sbjct: 267 TDDGLEAVQQSKLAATVYNDKEGQAMAMAQLAYLAATG-GSMKNIKFE-DKKYVYLPYEK 324 Query: 321 VDKDNLAEFSK 331 V DN+ EF K Sbjct: 325 VTPDNVNEFVK 335 >UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=Clostridiales RepID=C7G6I7_9FIRM Length = 367 Score = 197 bits (500), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 184/331 (55%), Gaps = 15/331 (4%) Query: 11 VMASMLFGAAAHAAD----TRIGVTIYKYDDNFMSVVRK-----AIEQDAKAAPDVQLLM 61 ++ S++ G D +IG+++Y D F+S + K A +++ + + + Sbjct: 34 LVMSVVIGGCGGREDAKKSIKIGISVYDQYDTFVSEMMKDFNDYATKKEEETGVAINIDT 93 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 ++ QS QN Q++ ++ +G + +NLVD +I+ A N+PV+FFN+E + Sbjct: 94 YNASASQSTQNSQVENMITEGCDVICVNLVDRTDPTAIIDLAEKNNIPVIFFNRELVEED 153 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 L+ + + YYVG + ESGI+QG+L A+ + +Q D N DG Q+V+L+GE GH DA R Sbjct: 154 LERWTRLYYVGAQAFESGIMQGELAAEAFLTDQSLDKNGDGIFQYVVLEGEAGHQDAIVR 213 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 T Y + + D G++ E+L A W+ AQA+ KM A L + IE+VIANND MA+GA Sbjct: 214 TEYSVSTMIDSGVEVEKLGYAIANWNRAQAQTKM-AQLMSQFGDSIELVIANNDDMALGA 272 Query: 242 VEALKAH--NKSSIP-VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 ++ALKA K P V G+D L VK+ + GTV ND QA A +LA L+ G Sbjct: 273 IDALKASGLTKDEWPAVIGIDGTDVGLEAVKNKEMIGTVYNDKEGQADAMLNLAYELSTG 332 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 +D ID K +R+PY V D++ + Sbjct: 333 SDLSDLN--LIDGKYIRLPYARVTCDDVDSY 361 >UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LSD8_CLOB8 Length = 349 Score = 196 bits (497), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 201/345 (58%), Gaps = 31/345 (8%) Query: 1 MNKKVLTLSA---VMASMLFG-------AAAHAAD---TRIGVTIYKYDDNFMSVVRKAI 47 M KK+L++ +M+ MLF A+ +AA+ R+ V + + D+++S+VRK + Sbjct: 1 MFKKMLSIIMFLMIMSYMLFSFKEKATFASINAAEKRPIRVAVFLINFSDDYISLVRKDL 60 Query: 48 EQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV---DPAAAGTVIEKA 103 E + P V+ D++++Q+ QN+Q+D +L +GV + ++LV D V + Sbjct: 61 EDIQEENPGKVEFTFYDAKSNQAVQNEQLDNVLKEGVDLIIMHLVKNRDELTVKRVTNQI 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDG 162 N+PV+FFN+EP + Y+K+ Y+G D+K GI++G+++A W N+ D N DG Sbjct: 121 AKDNIPVIFFNREPLLSEIKRYNKSLYIGLDAKSDGIMEGEILANEWNTNRDSIDKNHDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL--S 220 +Q+VLL+GE + A RT Y + L++ G++T++L+ A W AK+ +++ + Sbjct: 181 IMQYVLLEGERNNLVAADRTKYSLLALSEAGVETQELERVFAYWSRELAKEAVESLFLKT 240 Query: 221 GPNANKIEVVIANNDAMAMGAVEALKAH------NKSSIPVFGVDALPEALALVKSGALA 274 GP KIE +IAN+D+MA+GA+EAL+++ + +I V GV+ LPE+ L+ G + Sbjct: 241 GP---KIEAIIANDDSMALGAIEALQSYGYNLGDKEKNIAVVGVEGLPESQKLINEGLML 297 Query: 275 GTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVP 317 GT+ D A+A + + N+ G+ +GT+++ D +R+P Sbjct: 298 GTIFQDPKAMAEALYTIGMNMVKGRDPIEGTDYQFDQTGVAIRIP 342 >UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYW8_CLOB8 Length = 350 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 180/303 (59%), Gaps = 13/303 (4%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAK-GVKA 85 + V +Y +DD ++S++R+ +E+ K ++ D +NDQS QN ID L+ K GV Sbjct: 43 VAVLLYSFDDIYISLIRQNLEEIQKENEGKIKFTFYDGKNDQSVQNSSIDELIKKRGVDL 102 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR-KALDSYDKAYYVGTDSKESGIIQGD 144 +NLV + V+EK + N+P++ F++EP+ +++ SY+K YVGT +E+G++QG+ Sbjct: 103 FLVNLVTTHSTQEVVEKVKRVNIPIILFSREPAAIESIKSYNKCCYVGTRVEEAGLLQGE 162 Query: 145 LIAKHWAANQGW-DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 ++ W + + D NKD +Q+++L G+ + ++ T Y I ++N+ IKT++L + Sbjct: 163 IVTNLWNEKKSFIDKNKDNVLQYIMLMGQENNLESVKETEYPILKVNNSKIKTQELAVRA 222 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL------KAHNKSSIPVFG 257 W+ +AK+ + A L + N++E + ANND MA+GA++AL K N +IPV G Sbjct: 223 CNWNEDEAKEVIKA-LFLQHGNRVEAIFANNDPMAIGAIKALQEYGYNKGENTPTIPVVG 281 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVR 315 ++A+PEA L+ +G + G+V D + AK +++ N + GTN++ D VR Sbjct: 282 IEAIPEARELIDAGMMTGSVFQDPSEVAKVLYNVGMNYVYNRNPLYGTNYEFDETGISVR 341 Query: 316 VPY 318 +PY Sbjct: 342 LPY 344 >UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A6BKA3_9FIRM Length = 355 Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 113/314 (35%), Positives = 187/314 (59%), Gaps = 14/314 (4%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDVQLLMNDSQN---DQSKQNDQIDVLLAKG 82 RIGV Y DD F++ + ++++ K D+ ++ +N +Q QN+ ++ ++ G Sbjct: 47 RIGVVTYTQDDPFINAMTDQLKENLKKMETDLMKIITTVKNGDDNQQDQNEIVEEMIDAG 106 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 L +NLVD A +I A+ +++PV+FFN+EP R+ L ++K YY+G ++++SGI+Q Sbjct: 107 CDVLCVNLVDRTAPSRIIRMAKQEDIPVLFFNREPVREDLMQWEKLYYIGCNAEQSGIMQ 166 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 G+++A + + D N+DG+IQ++LL+GE GH DA +RT Y +K L ++GI E+L Sbjct: 167 GEIVADYIKNHPEVDKNQDGKIQYILLEGEAGHQDAISRTDYSVKTLLEQGIDLEKLSYQ 226 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSSIPV-FGVD 259 A W+ QA+++M + L ++IE+VI+NND MA+GAV A + ++ + PV FG+D Sbjct: 227 FADWNRGQAENRM-SRLIEQYGDEIELVISNNDEMALGAVAAWQKAGYDCRNWPVIFGID 285 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI--DNKVVRVP 317 L +AL +K+G + GTV ND +QA L+ + GK TN K + + Sbjct: 286 GLDDALEAIKTGKMKGTVYNDKEDQAMELAKLSVEIVCGK----DTNRKHLKEGRYYVSE 341 Query: 318 YVGVDKDNLAEFSK 331 Y VD N+ F K Sbjct: 342 YCRVDSSNVDHFLK 355 >UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0B9_CLOB8 Length = 348 Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 115/302 (38%), Positives = 177/302 (58%), Gaps = 12/302 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 I V +Y + D ++S+V + +E+ K V D + +QS Q++ + L++ L Sbjct: 43 IDVVLYNFKDKYVSLVMENLEEIQKQNEGKVVFRFYDGKGNQSTQDEVLSNLVSDNADIL 102 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDL 145 +NLVD A VI + + +N+P++FFN+EP S AL Y KAYYVGT++KE+G +QG + Sbjct: 103 MVNLVDTRATQDVINRFKSKNIPIIFFNREPVSVDALRYYGKAYYVGTNAKEAGEMQGKI 162 Query: 146 IAKHWAANQGW-DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 I W N+ + D N +G +Q+V+L+GE G +A R+ I +N GIKTEQL L A Sbjct: 163 IVDIWNKNREFIDKNNNGILQYVMLEGEHGSIEARERSESSIGTINKAGIKTEQLALKAA 222 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS------SIPVFGV 258 W AK + + L N IE +IANND MA+GAVEAL+ + + +I V G+ Sbjct: 223 DWQRDLAKTNISSLLLQYGKN-IEAIIANNDEMAIGAVEALQNNGYNLGDKNKTIVVVGI 281 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRV 316 DA EA L+K G +AG+V+ D A+A++ + N+ +G+ GT +K D+ +R+ Sbjct: 282 DATAEAQELIKKGFMAGSVMQDPYEMAEASYAIGMNVFEGRDPLYGTKYKFDDTKVAIRL 341 Query: 317 PY 318 PY Sbjct: 342 PY 343 >UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR89_9CLOT Length = 382 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 10/314 (3%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 A+ + V +DD F S R ++ +A+ + + L M D+ ND S N +++V L+K Sbjct: 56 AEMKATVIWRAFDDQFQSGFRIIMQNEAEKSGGITLDMQDAANDVSTANSKLEVALSKKT 115 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 +AI D + +++K VP VFFN EP ++ Y+ +YVG +K+SG + Sbjct: 116 DVVAICAPDRESIENMMKKCDADGVPAVFFNMEPMEDTMNRYENIWYVGAQAKQSGEMCA 175 Query: 144 DLIAKHWAANQGW-DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 + +W N+ D N DG++ V+L+GE G D RT + L GI+ E L D Sbjct: 176 QALINYWNDNKDIADKNGDGKLSLVILQGEIGQQDVTLRTDAYKETLEKNGIEYEILACD 235 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVF 256 TA WD AQA DKM+AW++ + IE V+ NND+MAMGAV+A + +S +P+ Sbjct: 236 TANWDQAQALDKMNAWITAYGIDGIEGVLCNNDSMAMGAVQACINNGYNSGDAEKFVPIV 295 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD---GTNWKIDNKV 313 G+DA +AL +K+G+L GTVLND +Q+ A ++ K + G + G N +D K Sbjct: 296 GIDANIDALEAMKAGSLLGTVLNDRKSQSDAIINVIKAVHAGTEITEDVVGVNCTVDGKY 355 Query: 314 VRVPYVGVDKDNLA 327 V VPYV VD+ NL+ Sbjct: 356 VWVPYVIVDESNLS 369 >UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C5EU51_9FIRM Length = 350 Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/278 (38%), Positives = 167/278 (60%), Gaps = 9/278 (3%) Query: 27 RIGVTIYKYDDNFMSVVR-----KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 RIGV +Y+ DD F+ +R KA E + K V+L + DS+ Q+ QN Q++ L++ Sbjct: 39 RIGVLLYRGDDTFIGTLRAGLEDKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVERLISL 98 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 G AL IN VD ++A +I+KA PVVFFN+EP + ++ ++K YYVG D+KES ++ Sbjct: 99 GCDALCINSVDRSSASIIIDKAMDAGTPVVFFNREPVEEDMNRWEKLYYVGADAKESAVL 158 Query: 142 QGD-LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 QGD L+ + ++ D N +G + +VLL+GE H D+ RT + I+ L D G+ E++ Sbjct: 159 QGDALVDAYRKDSRTLDANGNGLVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVPLEKIT 218 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSSIPVFGV 258 A WD +QA M+ WL +IE+V++NND MA+GA++A+ +SI V G+ Sbjct: 219 GGIANWDRSQASALMEQWLK-EYPGQIELVVSNNDDMALGAIDAMNRAGIGANSIKVVGI 277 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 D P + ++ G L TV +D A+A FD+A +L+ Sbjct: 278 DGTPVGIKALEEGTLFATVESDKERYAQAIFDIAWSLS 315 >UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Anaerococcus RepID=C2CJZ2_9FIRM Length = 362 Score = 189 bits (481), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 109/301 (36%), Positives = 174/301 (57%), Gaps = 11/301 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +I V +Y D +++ VR+ +E+ K ++L+ D QN+Q Q DQ++ ++A+GV + Sbjct: 58 KIAVLLYNGSDTYIASVRQQLEKLDKDDDSIELVFQDGQNNQGTQTDQLNNIIAQGVDGI 117 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESGIIQGDL 145 +N+VD +AA T +E + +P FFN++ + + K + ++GTD+ E+G +QG + Sbjct: 118 FMNIVDISAAPTAMETIKASGIPTAFFNRDMTESMKEDDLKDFIFIGTDAPEAGKMQGQI 177 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 + W D NK+G + +V+L G +P+A+ART + +K L D GIK ++ A Sbjct: 178 LTDLWKKGD-MDRNKNGVLDYVMLNGGLDNPEAQARTEFSVKTLKDNGIKVNEVAFQDAK 236 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA------HNKSSIPVFGVD 259 WDT +AK MD WL N + I+ VIANND MA+GA+ AL+A +K ++ V GVD Sbjct: 237 WDTDKAKTAMDTWLQ-TNQDNIDAVIANNDGMAIGAISALQAVGMNTGSSKDNMVVVGVD 295 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI--DNKVVRVP 317 A A+A + G ++GTV DA AKA D KN GT++K+ D K +R+ Sbjct: 296 ATDLAVAEIDKGTMSGTVKQDAEGMAKALIDTMKNRLANNDFIKGTDYKLGADKKSIRID 355 Query: 318 Y 318 Y Sbjct: 356 Y 356 >UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic galactose-binding protein n=2 Tax=Treponema pallidum RepID=B2S3D7_TREPS Length = 354 Score = 189 bits (480), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 181/347 (52%), Gaps = 34/347 (9%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 + ++ ++ ++ GA + IGV +Y+YD+ ++ +R + K ++L+ DSQ Sbjct: 6 MCVALLLCALGAGACKRSEKPTIGVVVYQYDNTLVARLRHILSTVGK--KHARILIVDSQ 63 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 QS QN ID +A+GV LA+NLVD AA TVIEKA+ +P+VFFN+ P L+ Y Sbjct: 64 ASQSIQNKHIDQFIARGVHGLAVNLVDHRAARTVIEKAQQARIPLVFFNRMPDLSDLNRY 123 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 +AYYVG E G++Q L+A++ D N DG IQ V+LKG+P H YV Sbjct: 124 ARAYYVGVKDDELGLLQSRLVAQYLERTPSADKNADGIIQCVVLKGDPDHKSGARCARYV 183 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + L + G+K E + A+ + + M + + ++IE V ANND A+GA+EAL Sbjct: 184 CQALREIGLKGEIIGEAFALDSRVKGQAAMHTLIH-THGDRIEAVFANNDDAALGAIEAL 242 Query: 246 KA-----HNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL--------- 291 ++ NK +PV G+DA AL ++ + GTVLND ++Q KA +L Sbjct: 243 QSAGFFKENK-RVPVVGIDATASALKAIEEDLMLGTVLNDVSSQGKAILNLLFALMGDSV 301 Query: 292 -------------AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 A N G+ A GT K + V +PY V K+N Sbjct: 302 PSIPAEDSTAFTHAGNGVAGRAAVFGTAEK---QCVWIPYKVVTKEN 345 >UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRZ3_CLOB8 Length = 349 Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 110/305 (36%), Positives = 170/305 (55%), Gaps = 14/305 (4%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++ ++ +DD ++S+VR ++E+ D V D + +Q QN +D L Sbjct: 39 KVATLLFAFDDPYISLVRNSLEEIQNKNKDSVSFTFLDGRRNQGIQNALLDSALQSDYDL 98 Query: 86 LAINLV--DPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQ 142 L INLV D +VI KA+ +N+PV+ FN P + + SY++A V T++ +SGI+Q Sbjct: 99 LLINLVSLDKNTVESVIRKAKQRNIPVILFNTVPFDTEPIKSYNRALVVSTNADQSGILQ 158 Query: 143 GDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 G+LI K W +++ D N D +Q+ +LKG AR+TY I +ND GI+T+++ Sbjct: 159 GNLIVKEWNSDKKTMDRNGDNVLQYFMLKGPNNSTVTNARSTYSISTINDAGIRTQEILS 218 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSS----IPV 255 WD AKD + L +KIE +I+NNDAMA+GA+EAL+ +NK IPV Sbjct: 219 KFCYWDEICAKDSTE-LLFLRYGDKIEAIISNNDAMAIGAIEALQKYGYNKEDKSKYIPV 277 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--V 313 FG+D +P A L+ G + GTV D N A+A + + NL K + TN+K D Sbjct: 278 FGIDGIPAAKDLINKGVMTGTVFQDPNQTAEALYSIGMNLVANKNPLENTNYKFDETGVT 337 Query: 314 VRVPY 318 +++PY Sbjct: 338 IQMPY 342 >UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=Clostridium butyricum RepID=B1QXR7_CLOBU Length = 351 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 183/311 (58%), Gaps = 12/311 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++ V + ++D+ +S +RK +E+ K D V+ D + +Q QND+I +L +G Sbjct: 39 KVSVFLSDFNDDLISEIRKNLEEIEKKNDDKVEYNFYDGKLNQKNQNDEIAKVLEEGTDL 98 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGD 144 + +N+VD A + TVI+K + NVPV+ FN+EP + + SY +A Y+GTD ++GI+QGD Sbjct: 99 ILLNIVDRAYSKTVIDKIKANNVPVILFNREPLTSVPIQSYGRAIYIGTDPVQAGILQGD 158 Query: 145 LIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 ++ W +++ D N DG +Q+ +L+GE + +A RT YVI + GIKT+Q+ +D Sbjct: 159 MLIDLWNSSEKIIDRNNDGILQYYMLEGEGDNTEATERTKYVISTIEKSGIKTQQVGVDF 218 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL------KAHNKSSIPVFG 257 A W A + + + I+V+IAN+D+MA+GAV+AL K +IPV G Sbjct: 219 ADWSEKAAYEHTKEAFEKYSLD-IDVIIANDDSMAIGAVKALQEYGYNKGEKSKTIPVVG 277 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN-KV-VR 315 VD +P+A ++ G + G+V D + A+A +++ NL + K T + +DN KV +R Sbjct: 278 VDVIPKAKEFIEKGYMLGSVYQDPKDYAEALYEVGMNLINYKDPIADTKYTLDNTKVSIR 337 Query: 316 VPYVGVDKDNL 326 +P+ +N+ Sbjct: 338 IPHTNYFYNNI 348 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/309 (38%), Positives = 170/309 (55%), Gaps = 18/309 (5%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGV IY++ DNFM++ R +E K +M D +NDQ+ Q +QI+ L +GV L Sbjct: 61 IGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIM-DGKNDQNTQTEQINTFLQQGVDVLV 119 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGTDSKESGIIQGDLI 146 IN V +A T+++ P+VF N+EP LDSY K YVG D+++SG QG+LI Sbjct: 120 INPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELI 179 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 + QG D+N DG+I +++ KG+P + DA+ RT Y IK L D + E L W Sbjct: 180 LE--TETQG-DINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDNW 236 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPE 263 D A+ + LS +KIEVV NNDAMA+GA+++++ ++ + + GVDAL E Sbjct: 237 DQTTAQQDVANALS-QYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALVE 295 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 A+ V G + GTVLND QA + K +GK K V YV V K Sbjct: 296 AVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDV---------EKYYWVDYVKVTK 346 Query: 324 DNLAEFSKK 332 DN +++ K+ Sbjct: 347 DNASQYLKE 355 >UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLD6_CLOCL Length = 349 Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 173/307 (56%), Gaps = 15/307 (4%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 T +GV + +D +MS+V++++ D ++ D Q++Q+ Q+ + + K Sbjct: 39 TNVGVMFFNINDPYMSLVKQSLNNIQNEHEDTIKFTFFDGQDNQAVQDAILSSIFNKNFD 98 Query: 85 ALAINLVDP--AAAGTVIEKARGQNVPVVFFNKEPSR--KALDSYDKAYYVGTDSKESGI 140 L I++V+ V+ KA+ N P++ F+ E S + + SY + ++ TDS++SGI Sbjct: 99 LLLIDMVNSNETLVSDVVNKAQKNNTPLILFSFELSNIPQIVKSYKRVVFIATDSRKSGI 158 Query: 141 IQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 IQG +I W AN+ D N+D +IQ+++LKG P R+ Y I ++D GI TE+L Sbjct: 159 IQGKIIVDKWLANKDILDRNRDDKIQYIMLKGNPDSKATNYRSNYSISTISDSGIATEEL 218 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNK----SSI 253 WD AK M++ L +NK+EV+I+NNDAMA+GA+EAL+ +NK +I Sbjct: 219 ASRVCNWDKELAKLTMNSLLLNL-SNKVEVIISNNDAMAIGAIEALQKYGYNKGGKTKNI 277 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK- 312 PVFGVD +PEA LV G +A TV+ D N A+A + + NL + + T ++ D Sbjct: 278 PVFGVDGIPEARELVNKGIMASTVIQDPNELAQALYTVGINLVLNRNPIENTKYQFDKTG 337 Query: 313 -VVRVPY 318 + +PY Sbjct: 338 IAIEMPY 344 >UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I5M4_9CLOT Length = 350 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 11/304 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQ-DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 R GV +Y D ++S ++K +E+ +++ ++ + +++ +Q QN QID L+ V Sbjct: 37 RAGVLLYNEDIYYISEIKKQLEKLESENKDEIDFIFYNAEGNQELQNKQIDELIKMKVDV 96 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGD 144 + +N+VD + +VI K + N+PV+FFN+EP S + SY+K+ YVGT + ++G I+ + Sbjct: 97 ILLNIVDVHESDSVINKIKENNIPVIFFNREPLSLNGIKSYNKSLYVGTQACDAGKIKSE 156 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 +I D N +G + ++LL+GE + +A+ R+ VI+ LN+ GIKT ++ + Sbjct: 157 MIINEIKNENIKDKNGNGSLDYILLEGEKDNVEAQLRSECVIRFLNESGIKTNEIASEVC 216 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL--KAHN----KSSIPVFGV 258 W+ AK K+++ + N IEV+I+NND MA+GAV AL K +N I V G+ Sbjct: 217 NWEKECAKQKIESLFDKYSDN-IEVIISNNDDMAIGAVLALQEKGYNLGDPNKFISVVGI 275 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID--NKVVRV 316 E ++K G + GTVL DA +AK + +A NLA GK A T+++ D VR+ Sbjct: 276 GGTEEVREMIKKGFMTGTVLQDAEEKAKVLYRIALNLAQGKEALQDTDYEFDVTGVGVRI 335 Query: 317 PYVG 320 PY G Sbjct: 336 PYNG 339 >UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNS0_CLOCL Length = 360 Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 173/318 (54%), Gaps = 23/318 (7%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +GV +Y +DD F +++++ +E+ PD ++ D + + S Q + I ++ L Sbjct: 43 VGVLLYSFDDIFTALIKENLEKIQNQNPDKIKFTFFDGKANLSIQQELIQKIIDMNFD-L 101 Query: 87 AINLVDPAAAGT---VIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 I D G +I K + +N P++FFN + +Y KA + T+ ++SGI QG Sbjct: 102 IITTFDDKKEGILENIINKIKQKNTPIIFFNATIDPNVIKAYKKAIIINTNVEQSGIQQG 161 Query: 144 DLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 ++I W N+ D NKD +Q++LL+G P A R+ VIK +ND GIKTEQL Sbjct: 162 NIIIDAWNTNRKSIDRNKDNILQYILLQGSPDSYAAIVRSKSVIKTINDAGIKTEQLSSI 221 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK------AHNKSSIPVF 256 W+ AK + + L NK++++IANNDAMA+GA+E L+ +N +I V Sbjct: 222 VCNWEKDCAKTSISS-LFLRYGNKLDIIIANNDAMAIGAIETLQKFGYNLENNNKNIAVI 280 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR- 315 G+DA+P A L+K G + G+V+ D + A+ F + NL DG+ +GT++K D V+ Sbjct: 281 GIDAIPPAQDLIKKGVMLGSVIQDPHVMAETLFKVGMNLVDGRNPTEGTDYKFDETGVKL 340 Query: 316 -VPYVGVDKDNLAEFSKK 332 +PY EF+KK Sbjct: 341 ILPY--------QEFTKK 350 >UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3521B Length = 372 Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 110/313 (35%), Positives = 179/313 (57%), Gaps = 12/313 (3%) Query: 29 GVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAI 88 G+T Y Y D ++ VR + + A+ V + +DSQ D Q + +D + KG K L I Sbjct: 60 GMTCYMYSDTHIANVRNTVLKAAETGT-VAVETSDSQFDVGLQMNAMDAFVTKGCKYLVI 118 Query: 89 NLVDPAAAGTVIEKARGQNVPVVFFNKE-PSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 N ++ A VI+ AR ++P++F+N + PS + +DSY Y+V + +++SG++QG+ A Sbjct: 119 NNINTNAKDQVIDVARKADLPIIFWNTDSPSDEEMDSYGPCYFVSSAAEQSGVVQGEAAA 178 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 K+W + D N +G++ +V+L G+ G+ D E RT Y I + + G++T L W Sbjct: 179 KYWKEHPEADRNGNGKMDYVMLMGQIGNYDTEMRTKYSIDTVKEAGVETNCLLEVVCEWQ 238 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA-----HNKSSIPVFGVDALP 262 A+A+D+M + +S NA+ I++V ANND MA+GA+EALKA + IPV GVDA Sbjct: 239 RAKAQDQMASVISA-NADDIDIVFANNDDMALGAIEALKAAGYFTDESNYIPVLGVDATK 297 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG-AADGTNWKI-DNKVVRVPYVG 320 L ++ G + T LN+ K + + + L G+ ++ + I D+K V + YV Sbjct: 298 VGLQALEDGTMLATSLNNPVIMGKCIYKILELLEAGEEITSENLGYDIDDHKRVWLDYVA 357 Query: 321 VDKDNL--AEFSK 331 + KDNL A+ SK Sbjct: 358 ITKDNLEDADLSK 370 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 172/311 (55%), Gaps = 21/311 (6%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 +D ++GV IY++ DNFM++ R +E +K + + D NDQ+ Q +QI+ + Sbjct: 77 SDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIKIMDGANDQATQTNQIENFITD 136 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK----AYYVGTDSKE 137 V L +N V+ ++A T+ +K + +P+V+ N+EP + +++ YVG D+++ Sbjct: 137 KVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQDEEKRWEEKNWDVTYVGCDARQ 196 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 SG QG++IA D+N +G++ ++++KG+P + DA+ RT + +K L D G++ Sbjct: 197 SGTFQGEIIAS--VGMDKLDMNGNGKVDYIMIKGDPENIDAQYRTEFSVKALQDAGMEVN 254 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIP 254 +L WD A A+ + L+ N IEVV NND+MA+GA++A++A ++ I Sbjct: 255 KLDEQVGNWDQALAQSLVANALA-KNGKDIEVVFCNNDSMALGALQAIQAAGRTVGKDIY 313 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 + GVDAL EA V +G GTV ND Q+ A D A N GKG ++ + Sbjct: 314 LVGVDALEEACQNVLAGTQTGTVFNDFLTQSHAAGDAAINYLGGKG---------NDHYI 364 Query: 315 RVPYVGVDKDN 325 YV V KDN Sbjct: 365 GCDYVKVTKDN 375 >UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0A2_CLOB8 Length = 350 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/308 (36%), Positives = 178/308 (57%), Gaps = 18/308 (5%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQ-DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG-VKA 85 +GV Y++DD ++ +R ++E +++ V+ +S+N++ QN I+ LL G + Sbjct: 39 VGVVFYRFDDPYVIDLRHSLEDIESRNEGIVKFNFYNSENNRDIQNQTINNLLESGNIDL 98 Query: 86 LAINLVDPAA-AGTVIEKARGQNVPVVFFNKEPSR---KALDSYDKAYYVGTDSKESGII 141 L ++LVD +I + +N+PV+F +K + + SYDKAYY+ DS+++G + Sbjct: 99 LILSLVDLVNDPKELINSIKEKNIPVIFASKRILKVDENIVKSYDKAYYILPDSEQAGRL 158 Query: 142 QGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEA--RTTYVIKELNDKGIKTEQ 198 QG L+A W N+ D NKD +Q+++L+G E+ RT Y I + D GIK EQ Sbjct: 159 QGKLLANLWNGNKNTIDTNKDNIMQYIVLQGGINSNSNESTDRTKYCIMTIRDAGIKVEQ 218 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH--NKS----S 252 L + W A+D DA L+ NKIEVVIANND MA+GAV+AL+ H NK + Sbjct: 219 LASEFCNWSEDLARDATDALLTRY-GNKIEVVIANNDTMAVGAVKALQKHGYNKGDGTKN 277 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN- 311 IPV G+DA+PE+L ++ G +AGTV D + A A FD+A +L+ ++ D Sbjct: 278 IPVVGIDAIPESLYFIQKGYMAGTVFQDPDVMANAFFDVAMHLSGKIRFECPKEYRCDES 337 Query: 312 -KVVRVPY 318 +++++P+ Sbjct: 338 GRIIQLPF 345 >UniRef50_B1QV54 ABC-type sugar transport system, periplasmic component n=3 Tax=Clostridium RepID=B1QV54_CLOBU Length = 347 Score = 174 bits (440), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 14/329 (4%) Query: 5 VLTLSAVMASMLFGAAAHAADTRI--GVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLM 61 +L ++ + + ++G I V +YK DD +++ ++ +E+ + D + Sbjct: 14 LLCVNLIFVNTVYGKMQANGQKLINASVLLYKGDDKYINEIKMKLEKIQEKNKDKINYKF 73 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRK 120 D + QS QN Q++ +L +G + +N+VD +A +VI K + N+PV+ F +EP S + Sbjct: 74 YDGEKKQSVQNSQLEQILKEGTDLILLNIVDMNSAESVINKIKMSNIPVILFTREPVSLE 133 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++ SY KA ++GTD E+GIIQG +I + W +D N + Q++ +KGE + + + Sbjct: 134 SIKSYGKALFIGTDGAEAGIIQGKIINQAWKEKGIYDKNNNDVFQYIFIKGEKDNIETQL 193 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ YVI L + GI T ++ + WD AK + + L N IE +I NND MA G Sbjct: 194 RSNYVIMSLKNYGINTLEIASEYCNWDKNYAKLVVKS-LFLRYGNSIEGIICNNDEMAEG 252 Query: 241 AVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 ++EAL ++I V G+D L AL L+K + GTV+ + + A A + + Sbjct: 253 SIEALHEFGYNMGNLNNNNIIVVGIDGLDAALELIKKKEMTGTVVQNIDEMANALYVVGN 312 Query: 294 NLADGKGAADGTNWKIDNK--VVRVPYVG 320 NL GK T +K D+ +R+PY G Sbjct: 313 NLVQGKDPLYDTKYKFDSSGVAIRIPYSG 341 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 21/308 (6%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 ++GV IY++ DNFM++ R +E K + + D NDQ+ Q QID + +GV Sbjct: 79 KVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGVD 138 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP----SRKALDSYDKAYYVGTDSKESGI 140 L IN V+ ++A T+ +K +P+V+ N+EP ++ D+ YVG D+++SG Sbjct: 139 VLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSGT 198 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 QG++I+ DLN +G+I +V+++G+P + DA+ RT Y +K L D G++ L Sbjct: 199 FQGEMISD--LGLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGLEVNCLS 256 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFG 257 W QA+ ++ A G N +EVV NNDAMA+GA++A+++ + + I + G Sbjct: 257 DQVGNWQQDQAQ-QIVANALGQYGNDVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLVG 315 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VDAL EAL V +G + GTV ND +Q+ + D A N G G ++ + Sbjct: 316 VDALSEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITGAG---------NDHYIGCD 366 Query: 318 YVGVDKDN 325 YV V KDN Sbjct: 367 YVKVTKDN 374 >UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY41_CLOB8 Length = 352 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/313 (36%), Positives = 172/313 (54%), Gaps = 15/313 (4%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLA 80 + R+G+ +D+++ ++RK E K P +V ++ +QS QN I+ L Sbjct: 37 QGSPVRVGLFTRDLNDDYIVLLRKNFEDIQKNNPGEVSFSFYNANFNQSTQNTDIENALH 96 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESG 139 KG+ + +++V+ +I + N+PVV FN+ P S +A+ SY KA+YVGTDS + G Sbjct: 97 KGIDLILLDMVNLLEIREMINRISQFNIPVVVFNRVPFSMEAIKSYKKAFYVGTDSAQGG 156 Query: 140 IIQGDLIAKHWAAN-QGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 +QG +IA W + Q D NKD +Q+VLL GE + + R+ Y + +N+ IKTEQ Sbjct: 157 TLQGKMIADAWRNHKQLIDKNKDDTLQYVLLVGEKLNKTSIDRSAYSVSTINEAFIKTEQ 216 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH-----NKS-S 252 L WDTA AKD +DA L NKIE +I+N+D+MA+GAV+AL+ + NKS S Sbjct: 217 LASPILNWDTASAKDAVDA-LFLRFGNKIEAIISNDDSMAIGAVQALQKYGYNTGNKSQS 275 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 I V G+D + EA LV G + GT + + + + NL + +G ++K D Sbjct: 276 IIVVGLDGVSEAKELVSKGFMLGTASQETADMTNTIYTVGMNLVKDRNPLEGVSYKSDET 335 Query: 313 VVRV-----PYVG 320 V V PY G Sbjct: 336 GVAVLLPYEPYTG 348 >UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G468_ABIDE Length = 350 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 98/280 (35%), Positives = 159/280 (56%), Gaps = 8/280 (2%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD---VQLLMN--DSQNDQSKQNDQIDVLLAK 81 RIGV++Y+++D F+S ++K +E K ++L M D+ Q QN Q+D ++ Sbjct: 39 RIGVSLYRFNDTFISSIKKEMENYVKYYEKGNGIKLNMEIVDAGGSQLTQNKQVDRFISL 98 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 + IN V+ A A +I+KA ++PVVFFN+EP + DK YVG KES I+ Sbjct: 99 NYDVICINPVERADASVIIDKALAADIPVVFFNREPVEDDMKRSDKFCYVGAPPKESAIL 158 Query: 142 QGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 +G ++ + + DL+ DG++ ++LL+GE H D+ RT + +K L D G+ ++L Sbjct: 159 EGKILVDAYKKDSSVLDLDGDGEVSYILLEGEASHQDSIVRTEWSVKTLKDGGVPIKKLA 218 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVD 259 D A WD QA M+ W+ ++IE+V++NND MA+GA++ +K ++ + GVD Sbjct: 219 GDIANWDRNQAAALMEGWVK-KYGDEIELVLSNNDDMALGAIDIIKNEKSLKNVKIVGVD 277 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A AL +K G L G+V +D A+A + A A G+ Sbjct: 278 ATAPALEAIKKGELFGSVSSDKPEYARAIIEFAIAKATGR 317 >UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=Clostridium RepID=A6LXH7_CLOB8 Length = 350 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 30/342 (8%) Query: 3 KKVLTLSAVMASMLFGAA---------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA 53 KK+L+L+ + +L+ + + ++GV + + D F+S V+K +E K Sbjct: 5 KKILSLTFISIFLLYSTSQTSYASPDISSQTPLKVGVFLNSFSDLFISNVKKNLEDIQKQ 64 Query: 54 APD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGT-----VIEKARGQN 107 + VQ ++ +Q QN+ +D L L +N P + + K +N Sbjct: 65 NENKVQFTFFNANGNQVIQNEDVDKALNDNFNLLVLN---PVSTNIDQLQDTLNKVAQKN 121 Query: 108 VPVVFF--NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKDGQI 164 +P++ + +P + +Y + + TD +SGIIQG +I W AN + D NKD I Sbjct: 122 IPLILYYAKTKPIVNFIKNYHNSVIIDTDVDQSGIIQGKIIVDTWNANKEKLDKNKDNII 181 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+++LKG P+ RT Y I +N+ GIKT++L W+ + M++ L + Sbjct: 182 QYIMLKGPSNSPETIERTKYSILTINESGIKTQELLSIPCNWEEECGRTSMESTLLTLDG 241 Query: 225 NKIEVVIANNDAMAMGAVEAL------KAHNKSSIPVFGVDALPEALALVKSGALAGTVL 278 KIE +I+NNDAMA+GA++ L K +N +IP+ G+D LP+A L+ G + GTV+ Sbjct: 242 -KIEAIISNNDAMAIGAIKTLQKYGYNKGYNSRNIPIVGIDGLPKAQELINQGIMTGTVV 300 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 D+ A A + + NL G +GTN+K D + +PY Sbjct: 301 QDSRAHANAIYTIGMNLISGNTPLNGTNYKFDESGVTINIPY 342 >UniRef50_A6M0H3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0H3_CLOB8 Length = 348 Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 170/304 (55%), Gaps = 14/304 (4%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +I V + ++D ++S+++ +E+ K A +++ + D +N+ QN+ I L+ Sbjct: 42 KIVVLLSSFNDAYISLIKDNLEKIQKENANNLEFIFLDGKNNTDIQNELITSTLSTDFDL 101 Query: 86 LAINLV--DPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQ 142 L NLV D + I K + +N+PV+ FN P ++ SY KA + T +++SGI+Q Sbjct: 102 LLANLVNLDANNIDSFINKVKSKNIPVLLFNIVPFVTTSIKSYPKALVIATSAEQSGILQ 161 Query: 143 GDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 GDLI W +N+ D NKD +Q+++L + + ART Y I +N GIKTE+L Sbjct: 162 GDLIVNAWKSNKAAMDKNKDNILQYIMLTEKNNNTLTTARTRYSISTINISGIKTEELSR 221 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH-----NKSSIPVF 256 ++ A+ M++ +KIE +IANND +A+GA+ AL+ + NKS IPV Sbjct: 222 ISSEGTKEAAQMIMESTFLKY-GDKIEAIIANNDTLAIGAINALQKYGYNIGNKS-IPVV 279 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VV 314 G DA+PEA L+K G++ GTV+ D + A+A + + NL + TN+K + VV Sbjct: 280 GADAIPEARELIKKGSMLGTVIQDPSEMAEALYKVGMNLIYNRPPLSNTNYKFNETGFVV 339 Query: 315 RVPY 318 +PY Sbjct: 340 EMPY 343 >UniRef50_C0BEZ2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEZ2_9FIRM Length = 380 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 173/335 (51%), Gaps = 41/335 (12%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAK 81 ++D I V Y Y D +++ VR A+ DAK V+ D ++Q+ QN+QID + Sbjct: 39 SSDANIAVFYYTYSDTYIASVRTAL--DAKLDEMGVEYQDYDGNSNQTTQNEQIDTAIQT 96 Query: 82 GVKALAINLVDPA---AAGTVIEKARGQNVPVVFFNK-----EPSRKALDSYDKAYYVGT 133 G AL +N+V A+ ++EKA +PV+FFN+ + L SYDK +VGT Sbjct: 97 GATALIVNIVTSGSVDASSQIVEKAEAAGIPVIFFNRAIEDDKTEGDVLGSYDKCAFVGT 156 Query: 134 DSKESGIIQGDLIAKHWAAN-QGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE---- 188 D+ E+G +QG++I + + DLN DG+I + + G+ G+ +A RT + +++ Sbjct: 157 DAPEAGHMQGEMIGNYVVEHFDEMDLNGDGKISYAMFMGQLGNAEAIYRTQFAVEDADKI 216 Query: 189 LNDKG---------IKTEQLQLDT-AMWDTAQAKDKMDAWLSGPNA---NKIEVVIANND 235 + D G +++ Q+D W A + M LS N N IE+VI NND Sbjct: 217 ITDAGKPALEYFDASNSDKYQVDQDGNWSATAANNYMTTNLSQYNEGSNNMIELVICNND 276 Query: 236 AMAMGAVEAL--KAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 MA GAV AL K +N + IPVFGVDA A L+ G + TV DA+ A Sbjct: 277 GMAEGAVSALNDKGYNLGTGKDCKMIPVFGVDATDAAKQLIADGKMTATVKQDADGMAAC 336 Query: 288 TFDLAKNLADGKGAADGTN-WKIDNKV---VRVPY 318 DLAKN A GK DGT+ + I KV + +PY Sbjct: 337 IADLAKNAAGGKDLMDGTDSYNISEKVSNKIFIPY 371 >UniRef50_A9KK36 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A9KK36_CLOPH Length = 367 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 173/330 (52%), Gaps = 40/330 (12%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +GV Y Y D ++S VR A+++ A ++ D ++Q+ QN+QID +++G L Sbjct: 34 NVGVFYYTYSDTYISSVRTALDKSLTDAG-IKYQNYDGNSNQTTQNEQIDTAISQGTNLL 92 Query: 87 AINLVDPA---AAGTVIEKARGQNVPVVFFNK-----EPSRKALDSYDKAYYVGTDSKES 138 +N+V A+ +++EKA+ +PV+FFN+ E K L SYDK +VGTD+ E+ Sbjct: 93 IVNIVTSGSMDASNSIVEKAKAAKIPVIFFNRAVESDEDEGKVLGSYDKCAFVGTDAPEA 152 Query: 139 GIIQGDLIAKHWAAN-QGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI--- 194 G +QG ++ + N DLN DG+I + + G+ G+ +A RT + +++ DK I Sbjct: 153 GHMQGQMVGDYVVKNFDAIDLNGDGKISYAMFMGQLGNVEAIYRTQFGVEDA-DKVITAA 211 Query: 195 -----------KTEQLQLDT-AMWDTAQAKDKMD---AWLSGPNANKIEVVIANNDAMAM 239 +++ Q+D W + A D M A S N IE++I NND MA Sbjct: 212 GKPALQYFDSSNSDKYQVDKDGTWSASAANDYMTTNLAQYSEATNNMIELIICNNDGMAE 271 Query: 240 GAVEAL--KAHN-----KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 G + AL K +N +IPVFGVDA A L+ G + GT+ DA A LA Sbjct: 272 GVISALNDKGYNLGTADCKTIPVFGVDATDAAKQLIADGKMTGTIKQDAVGMADGIAYLA 331 Query: 293 KNLADGKG-AADGTNWKIDNKV---VRVPY 318 KN+ +GK AD +N+ I KV + +PY Sbjct: 332 KNIQNGKDLMADTSNFNISPKVSNKIYIPY 361 >UniRef50_C5RHD6 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHD6_CLOCL Length = 363 Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 103/331 (31%), Positives = 186/331 (56%), Gaps = 18/331 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLL 60 ++T+S +++ A ++ T +GV + + + + ++K++E AK + V+ Sbjct: 17 IITISICNNAIVIKAISNGIKTETIEVGVVLNNFYNPYNLSIKKSLEDIAKENNNNVKFT 76 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV---IEKARGQNVPVVFFNKEP 117 D + +++ +N+ + + + K L + +VD ++ V + KA+ +NVP++F N P Sbjct: 77 FFDGKGNEAIENELVGKMFNENYKLLLVAIVDKRSSELVSNFVSKAKNKNVPIIFINTTP 136 Query: 118 SR-KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGH 175 + L+ Y KA + TDS ++ +QG LI W N+ D N D +Q++L++GEP Sbjct: 137 ADIDVLNGYTKALAINTDSIQAATLQGKLIVDAWNTNKKSMDKNNDDILQYILIQGEPES 196 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 A R YVI+ +N+ IKTE+L +A W++ A+ + L +KIE +I+NND Sbjct: 197 YAAIVRNQYVIQTINNARIKTEELAKISANWNSDIAEAAIQP-LFFRYGDKIEAIISNND 255 Query: 236 AMAMGAVEALK--AHNKS----SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 +MA+G ++AL+ +NK +IPVFG+ A+ EA L+K G +AG+VL + A+A + Sbjct: 256 SMAIGTIKALQKYGYNKGNKIKTIPVFGIGAVSEAQELIKKGFMAGSVLQNPRLLAEALY 315 Query: 290 DLAKNLADGKGAADGTNWKIDN--KVVRVPY 318 + NL K +GTN+K D K++ +P+ Sbjct: 316 TVGMNLILNKLPLEGTNYKFDKRGKIILIPF 346 >UniRef50_C5RHA5 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RHA5_CLOCL Length = 352 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 90/294 (30%), Positives = 173/294 (58%), Gaps = 12/294 (4%) Query: 38 NFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKG-VKALAINLVDPAA 95 + ++ + +++E+ K D + + D+Q +Q QN Q+D++L + + + + LV+ Sbjct: 52 HIITALGESLEKVEKDNSDKIDFIFYDAQVNQDIQNQQLDLVLKENNIDLILLELVESNN 111 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 V++K +G N+PV F + ++SY+KAY++ ++++ GI+QG+++ W ++ Sbjct: 112 TKHVLDKIKGHNLPVGFMG-DADIIPINSYNKAYWLTINAEQGGILQGNILVDAWNKDKP 170 Query: 156 -WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDK 214 D+NKD +Q+++L G PG+ + R + LND I T+++ W AKD Sbjct: 171 KIDINKDNIMQYIVLLGTPGNIYTDVRIRSCLSTLNDHHIGTQEIASKVCYWSEDMAKDT 230 Query: 215 MDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSS---IPVFGVDALPEALALVK 269 ++ L +NKIEV+I+N+D MA+GA++AL+ +NK+ IPV G D +PEA +L++ Sbjct: 231 VENLLLT-YSNKIEVIISNDDVMAIGAIKALQKFGYNKNPTKVIPVVGFDGIPEASSLIR 289 Query: 270 SGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID--NKVVRVPYVGV 321 + + GTV+ + ++ A TF +A N+ + + +GT+ ID K++ +P G+ Sbjct: 290 NRLMTGTVIQNPDHIAMNTFKIALNILNNRNLIEGTDCLIDPTGKIIYIPNHGI 343 >UniRef50_C5RNR8 Putative galactoside ABC transporter n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNR8_CLOCL Length = 346 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/294 (33%), Positives = 162/294 (55%), Gaps = 13/294 (4%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVK-A 85 +GV +Y D F+S+++K +E + D + + D + + + + ++ + L++G Sbjct: 41 VGVLLYNESDLFISLIKKNLENIQRNNEDKLNFIFFDGKGNTTITH-ELAIQLSQGYYDL 99 Query: 86 LAINLVDPAAAGT--VIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 L +NL+ P+ T +I + +N+P V F E S K + +Y KA VG G QG Sbjct: 100 LLMNLMTPSPENTEQIISSLKSRNIPFVLFISEVSEKLIFNYKKAAIVGFSLINPGATQG 159 Query: 144 DLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 ++ W ++ D NKD ++Q+++LKG+P ART ++ + + GIK ++L Sbjct: 160 QILVDAWNTDKNSIDKNKDNKLQYIMLKGDPTLIVTTARTNAALETITNAGIKIDELASI 219 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKS----SIPVF 256 WD AK M A L N IE +I+NNDAMA+GA++AL+ +NK SI V Sbjct: 220 NIYWDKELAKTTM-ASLFLRYGNSIEAIISNNDAMAIGAIKALQKFGYNKGNKDKSIAVV 278 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 G DA+PEA L+K G + G+VLNDA A+ +++ NL GK +GT +K++ Sbjct: 279 GFDAIPEAQELIKKGIMLGSVLNDAKTFAEMLYNVGVNLTLGKSPIEGTQYKLN 332 >UniRef50_C5RF54 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RF54_CLOCL Length = 301 Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 95/276 (34%), Positives = 161/276 (58%), Gaps = 16/276 (5%) Query: 57 VQLLMNDSQNDQSKQNDQID-VLLAKGVKALAINLVDPAAAGT--VIEKARGQNVPVVFF 113 V+ +++N+++ Q+ I V+ + L +NLV+ +A +I++A+ +PVV F Sbjct: 12 VEFTFYNAENNEAIQDATISKVIRERTADLLMVNLVNKSAESVKKLIDEAKRYGIPVVLF 71 Query: 114 N--KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLK 170 N + + + SY+KA+ +G D +++GI+QG +I W +N+ D NKD +Q+++L+ Sbjct: 72 NYLQPETVDIIKSYNKAFAIGLDERQAGILQGQIIVDMWNSNKAKIDKNKDNTLQYIMLQ 131 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 230 RT I+ +N+ GIKT+QL L A WD A++ + A L AN IE + Sbjct: 132 A-SNEAVPLIRTNSAIETINNAGIKTKQLALVNAKWDKELAREAISA-LFLRYANLIEAI 189 Query: 231 IANNDAMAMGAVEALKAH------NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 I+NNDAMA+GA+EAL+ + + +I V G+DA+PEA LV G + GT++ + N Sbjct: 190 ISNNDAMAIGAIEALQKYGYNTGNSSRNILVVGIDAIPEARELVNKGVMTGTIIQEPRNT 249 Query: 285 AKATFDLAKNLADGKGAADGTNWKI-DNKV-VRVPY 318 A+A +D+ NL + TN+K+ +N V V +P+ Sbjct: 250 AEALYDIGMNLVTKGSHINNTNYKLAENGVEVLLPF 285 >UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RKD3_CLOCL Length = 357 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 180/344 (52%), Gaps = 31/344 (9%) Query: 3 KKVLTLSAVMASMLFGAAAHAADT-------------RIGVTIYKYDDNFMSVVRKAIEQ 49 K+ LTL+ + ++ + T ++G+ +Y +++ ++S+++K++E Sbjct: 5 KRTLTLTITLIFIIVTLTSCGLKTIKVSSNVSTKNPIKVGILLYSFEEMYLSLLKKSLED 64 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP--AAAGTVIEKARGQ 106 K D V+ D + + + Q +D ++ K + +N+ + +I +A+ + Sbjct: 65 IEKENTDKVEFTFFDGKANSAIQYQLMDEMINKNFDLIFLNIFESKQEILEDIIYRAKQK 124 Query: 107 NVPVVFF-NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQI 164 N+ ++ F + P+ + SY K + K+ +++G +I W N+ D N D + Sbjct: 125 NIALILFLSTIPNLDIMKSYSKIAIIAAALKDPPVLEGQIIVDEWKTNKKIMDKNGDNIL 184 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL--SGP 222 Q+V+LKG+ ++ RT Y ++ + + GI+T++L W+ AKD + + GP Sbjct: 185 QYVMLKGKKDSTLSDTRTKYSLETIKNAGIQTDELSTVVCNWNRETAKDAITSLFLRYGP 244 Query: 223 NANKIEVVIANNDAMAMGAVEALKAH-----NKS-SIPVFGVDALPEALALVKSGALAGT 276 KIE +IANND +A+GA+E L+ + NKS +IPV G+DALPEA L+K G + G+ Sbjct: 245 ---KIEAIIANNDTLAIGAIEGLQKYGYNKGNKSKTIPVVGIDALPEAQELIKKGFMLGS 301 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 V ++ A + + NL + K +GTN+K+D+ ++ P+ Sbjct: 302 VFHNPRILADTIYTVGMNLVNEKKITEGTNYKLDSSGIIISAPF 345 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/332 (33%), Positives = 170/332 (51%), Gaps = 41/332 (12%) Query: 11 VMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSK 70 + A++L AAHA IG ++ +DD F +++R +E AK V L + D+ ND +K Sbjct: 8 IAAAVLVSTAAHA--ETIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQIEDALNDVAK 65 Query: 71 QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY-DKAY 129 Q QI +A GV A+ + VD A + + A +P+V+ N+EP +D+ +K Sbjct: 66 QQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVN--IDTLPEKQA 123 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 189 +V ++ +SG +Q I K DG+ + V++ GE + A RT K++ Sbjct: 124 FVASNEVDSGTLQTREICKLL----------DGKGKAVVIMGELSNQAARMRT----KDI 169 Query: 190 ND-------KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 +D KGI+ Q Q TA W Q D M WLS + + VIANND MA+GA+ Sbjct: 170 HDVLATDQCKGIEIVQEQ--TANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAIGAI 225 Query: 243 EALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 +ALKA +S S+ + G+DA +ALA + +G L +V DA Q K + D A L+ G+ Sbjct: 226 QALKAAGRSMDSVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGEA 285 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + +P+ V K NLAEF K Sbjct: 286 V---------ERKIYIPFELVTKANLAEFQGK 308 >UniRef50_C5RJJ5 D-galactose-binding periplasmic protein n=3 Tax=Clostridium cellulovorans 743B RepID=C5RJJ5_CLOCL Length = 350 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 20/306 (6%) Query: 29 GVTIYKYDDNFMSVVRKA---IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 V I D+ ++ ++K+ IE+D D DS+ DQ QN+ I+ + + Sbjct: 40 AVFIRSLDNYLLTDIKKSLEDIEKDQYNKIDFSFF--DSKWDQGIQNEYIEKSINENYDI 97 Query: 86 LAINLVDPA--AAGTVIEKARGQNVPVVFFNKEPSR--KALDSYDKAYYVGTDSKESGII 141 I V I K N+P + + S K + + ++ V D ++SG + Sbjct: 98 FVIIPVSTKIDEIKNAINKVVASNIPFILYLPTSSSLIKTVQATPRSAIVTRDVEQSGTL 157 Query: 142 QGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 QG ++AK W N+ D +KD + +VLL+G P + ART Y ++ L ++ I T+QL Sbjct: 158 QGKILAKLWNTNKDTMDKSKDNVLDYVLLQGSPNYLSTIARTKYSLQALTEENIHTKQLL 217 Query: 201 LDTAMWDTAQAKDKMD-AWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSS----I 253 T W+ AK ++ A+L+ +NKIE +I+NND MA+GA+EAL+ +NKS I Sbjct: 218 SVTCNWEQECAKRAIESAFLTL--SNKIEAIISNNDDMAIGAIEALQKYGYNKSDKSKFI 275 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID-NK 312 PV G+ +A L+ G +AGTV+ D Q KA +D+ NL GK GTN K + Sbjct: 276 PVVGIGGSSKAKELINQGVMAGTVIEDIPTQIKALYDIGMNLISGKNITYGTNLKTNLGN 335 Query: 313 VVRVPY 318 V+ +PY Sbjct: 336 VITIPY 341 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 35/310 (11%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG + +DD ++S ++ +++ K DV+++ D+ ND SKQ Q++ + + V A+ Sbjct: 59 IGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQKVDAIV 118 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESGIIQGDLI 146 + VD +A +++KA N+P+V N + D DKA YVG++S ++GI+Q + + Sbjct: 119 LIPVDTVSAPEMVDKANQANIPIVVVN-----RIFDGVDKATAYVGSESIKAGIMQMEEV 173 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT---YVIKELNDKGIKTEQLQLDT 203 AK LN G+I ++ G+ GH RT VIK+ D + E T Sbjct: 174 AKL--------LNGKGKI--AIMNGQMGHEAQIKRTEGNKQVIKKYPDMKVVLE----GT 219 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALP 262 A WD A+ M+ WL + KI+ V+ NND MA+GA+ AL+ K + V GVDA P Sbjct: 220 AEWDRAKGMSLMENWLQ--SGKKIDAVVCNNDEMAIGAIMALEDEGKLDDVIVAGVDATP 277 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 +AL VK G L TV +A Q + ++A A G+ + NW +PY V Sbjct: 278 DALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGE-KVEKFNW--------IPYELVT 328 Query: 323 KDNLAEFSKK 332 KDN+ E+ KK Sbjct: 329 KDNVEEYIKK 338 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 137 bits (345), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 109/335 (32%), Positives = 176/335 (52%), Gaps = 32/335 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L +++V+ ML A+ A D +IGV++ +DDNF++++R++++ K +V Sbjct: 1 MKLKKLIVTSVLMCML-PASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQ 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D++ D ++Q QI+ +++GV A+ +N VD +I+ A +P+VF N+ P Sbjct: 60 FEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPE-- 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + YVG+DSK +G +Q + +AK +N G + ++L GE + Sbjct: 118 -VTLPAGMAYVGSDSKLAGKLQMEELAKL--------MNGKGNV--MILMGELSNEATRD 166 Query: 181 RTTYVIKELNDK--GIKTEQLQLDTAMWDTAQAKDKMDAW-LSGPNANKIEVVIANNDAM 237 RT V +E+ K GIK L TA W +A D W L+G +I+ + +NND M Sbjct: 167 RTRGV-EEVAAKYPGIKI--LDKQTAKWGRKEAVDITTDWALTG---QQIDAIASNNDEM 220 Query: 238 AMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A+GA+ ALK KS + V GVD P+AL +K G LA +V DA Q + A L Sbjct: 221 AIGAILALKQAKKSGVLVAGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVK 280 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ K+++ V+ +PY + K N EF+ K Sbjct: 281 GE--------KVESNVL-IPYQLITKANYQEFADK 306 >UniRef50_A6LWC0 D-galactose-binding protein n=7 Tax=Clostridium RepID=A6LWC0_CLOB8 Length = 355 Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 98/307 (31%), Positives = 155/307 (50%), Gaps = 17/307 (5%) Query: 26 TRIGVTIYKYDDNF-MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 + I V + DD F M V+ + + V+ + +N+ + Q++ +D L Sbjct: 40 SNIAVIFFVTDDPFTMKVIESLKNIENENQNRVKFTFLNPKNNIAIQDEILDAALQTKYD 99 Query: 85 ALAINLVDPAAAGTVIE----KARGQNVPVVFFNKEP--SRKALDSYDKAYYVGTDSKES 138 + L P V+E K + +N P++ N P + +A Y+K +V DSK++ Sbjct: 100 LFILYL--PDRRENVVEGAINKIKQKNKPLILMNIIPEVASRASKLYEKVVFVTPDSKKA 157 Query: 139 GIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 GI QG +IA W N+ D N D +Q+VLL+G P R+ Y I LND GIKT+ Sbjct: 158 GIAQGKIIADFWNKNKSSLDANGDNILQYVLLQGPSDDPQPIDRSKYAISTLNDSGIKTQ 217 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH-----NKS- 251 +L A W AK +D N +IE +I+NNDAMA+GA+EAL+ + NKS Sbjct: 218 ELARVNANWSKDLAKSSIDNLFLKYNG-RIEAIISNNDAMAIGAIEALQKYGYNKDNKSK 276 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 +I V G+D L EA L+ G + GTV+ D +A+ + + NL + T++K+ Sbjct: 277 NIAVVGIDGLQEAKDLIDKGIMTGTVIQDPRIEAEVLYKVGMNLIKNLSPTENTDYKVAE 336 Query: 312 KVVRVPY 318 + +P+ Sbjct: 337 GEIIIPF 343 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 169/335 (50%), Gaps = 33/335 (9%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLLMN 62 K L LS V+AS +F + AAD +IGV++ +DDNF++ +R IE AK + DVQ+ Sbjct: 2 KKLALS-VLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQI--E 58 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D +N+ Q +QI +A GV A+ +N VD A ++ A +P+++ N++P Sbjct: 59 DGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPIN-VN 117 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 D +V ++ + SG +Q + + + G+ V++ GE + A RT Sbjct: 118 QLPDNQAFVASNEEVSGTLQTEEVCRLLG----------GKGNVVVMMGELSNQAAIQRT 167 Query: 183 T---YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 VIK G+K Q TA W + D M WLS + + VI+NND MA+ Sbjct: 168 KDIHDVIKRKECSGMKVVAEQ--TAEWSRLKGNDLMTNWLSA--GLEFDAVISNNDEMAI 223 Query: 240 GAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA + S+ V G+DA P+ALA +KSG L TV A Q D A LA Sbjct: 224 GAIQALKASGRKMDSVVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAK 283 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ +D K V VP+ V NL ++ K Sbjct: 284 GE--------NVDQK-VWVPFELVTPANLDKYLSK 309 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 109/325 (33%), Positives = 163/325 (50%), Gaps = 33/325 (10%) Query: 14 SMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQND 73 S+L G AAHA +GV++ +DDNF++V+R + +K V L + D+QND +KQ Sbjct: 11 SVLLGTAAHA--ETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQVEDAQNDVAKQQS 68 Query: 74 QIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY-DKAYYVG 132 QI +A V A+ +N VD A + + A +P+V+ N++P +DS D +V Sbjct: 69 QIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVN--VDSLPDGQAFVA 126 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKEL 189 +D +G ++ + + G+ V++ GE + A RT V+K Sbjct: 127 SDETVAGTLEAKEVCRLLG----------GKGNAVIMMGELSNQAARMRTQSAKDVLKTD 176 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 KGI + Q TA W Q D + WLS + + VIANND MA+GA++ALKA Sbjct: 177 ECKGISVVEEQ--TANWQRTQGSDLVTNWLS--SGIEFNAVIANNDEMAIGAIQALKAAG 232 Query: 250 K--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNW 307 K S V GVDA +ALA +++G L TV DA Q K D A L G Sbjct: 233 KDMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGD-------- 284 Query: 308 KIDNKVVRVPYVGVDKDNLAEFSKK 332 KI+ K V +P+ V +N+ ++ K Sbjct: 285 KIEKK-VYIPFQLVTPENVKDYVAK 308 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/330 (28%), Positives = 164/330 (49%), Gaps = 35/330 (10%) Query: 12 MASMLFGAAAHAADT----------RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 M S+ + + DT ++GV+I +DD F++ + +++ A+ D++L Sbjct: 15 MLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEF 74 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 D++ D +KQ +Q++ + +G + + VD +AA + A +V+ N+ P Sbjct: 75 VDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLP 134 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 D AYYVG++ K++GI+Q + +A+ G+ V+L G+ + R Sbjct: 135 ----DGAYYVGSEEKKAGIMQMEYLAEKMG----------GKGNIVILMGKLDNEGTIKR 180 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 T V +E+ K + L T +W K + WL+ N+I +++NND MA+GA Sbjct: 181 TEGV-EEIAKKYPDIKILDKQTGLWQRTDGMAKTENWLN-KYGNEINAIVSNNDDMALGA 238 Query: 242 VEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 V+ALK K+ I V GVDA P+ LA + +G ++ TV DA+ Q ++AK A+G+ Sbjct: 239 VQALKDSGKTGIFVIGVDATPDGLAALAAGDISATVFQDADGQGGGAVEVAKKAANGETV 298 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 T W VP+ V +N+ EF K Sbjct: 299 VKET-W--------VPFKLVTPENINEFKK 319 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 177/348 (50%), Gaps = 46/348 (13%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTR---------------IGVTIYKYDDNFMSVVRKA 46 NK +L +++ S+L A +T IGV+I D+ F++ ++ A Sbjct: 4 NKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLDE-FLTYMQDA 62 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 ++++A PD + + +D+QND ++Q Q++ +++ V A+ +N VD +A ++ Sbjct: 63 MKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMVNDA 122 Query: 107 NVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 +P++ N + D D+A +VG++S +SG++Q + +AK LN +G I Sbjct: 123 GIPIIIAN-----RTFDGVDQATAFVGSESIQSGLLQMEEVAKL--------LNNEGNI- 168 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 ++ GE GH +A+ T K++ ++ E + TA +D ++ M+ WL+ + Sbjct: 169 -AIMDGELGH-EAQIMRTEGNKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLN--SGT 224 Query: 226 KIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 +I+ V+ANND MA+GA+ AL+A K + V G+DA P AL +K G L TV DA Q Sbjct: 225 EIDAVVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQ 284 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +A A+G+ D +PY V +N+ E+ K Sbjct: 285 GATSVKVAVQAANGEDVEDA----------MIPYELVTPENVEEYEAK 322 >UniRef50_C4GL06 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GL06_9NEIS Length = 350 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/324 (28%), Positives = 154/324 (47%), Gaps = 12/324 (3%) Query: 17 FGAAAHAADTRIGVTIYKYDD----NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQN 72 +G A+ + +T+ D F ++ + K P V+L + + N Q Q Sbjct: 30 YGEASAPISQEVKITVNSVDKPDSLEFQKLMNAGVLAAGKDYPTVKLKIEQAPN-QDAQI 88 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 QI A KA+ +N+ + A +++ + +PVVFF P ++AL Y + Sbjct: 89 QQIGQSAADA-KAIVLNIANNQAVIPLMKDLCAKKIPVVFFGASPDKRALADCPLDYDLR 147 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN-- 190 D +G++QG L+A+ + N D N DG IQ+ +K G R+ + + ++ Sbjct: 148 GDDMTAGVVQGLLVAQAFKDNPAMDKNGDGTIQYAFMKATQGTEFTRDRSDWAVATMSSY 207 Query: 191 -DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 + ++ + A +D A ++AWL+ PN +K+EV++ NND A+ LK Sbjct: 208 PELARPVSEVMVSYANFDPALGLKNLEAWLANPNFSKVEVILTNNDDTAIAIANELKKRG 267 Query: 250 KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG--TNW 307 +IPV+G D L VKSG LAGT D A +A NL GK +G T++ Sbjct: 268 -INIPVYGSDGGEVGLRAVKSGLLAGTARGDYQQWAHDAVRVAANLGLGKPPLEGLPTSY 326 Query: 308 KIDNKVVRVPYVGVDKDNLAEFSK 331 +++ + + P+VG+ N+ EF K Sbjct: 327 RMEERTIYPPFVGISAKNVDEFLK 350 >UniRef50_C5RMK4 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RMK4_CLOCL Length = 353 Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/308 (30%), Positives = 155/308 (50%), Gaps = 18/308 (5%) Query: 28 IGVTIYKYDDNFM-SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID-VLLAKGVKA 85 I + +Y +++ M S+ +K I+ K V + +N+ S Q +D +LL + Sbjct: 39 IAIGMYDFENPQMKSIQQKFIDIQNKNQDKVNFSFYNGKNNLSIQVAIVDSLLLNPTIDF 98 Query: 86 LAINLVDPAA--AGTVIEKARGQNVPVVFFNKEP--SRKALDSYDKAYYVGTDSKESGII 141 + I L +P + +I KA +N+P++ + +P + K Y K ++ E GI+ Sbjct: 99 MVIGLSNPPSDVIEDIIRKASLRNMPLIMLDVDPKIASKLSKEYSKVVFLKGKQGEVGIV 158 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 QG+++ W N+ D NKD +Q+++LKG +P A R Y + +N+ GIKT++L L Sbjct: 159 QGEILVDQWNNNKVMDKNKDNILQYIMLKGATDNPVANDRVKYSVSTINEAGIKTQELAL 218 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK--AHNKSS----IPV 255 W AK +++ L A IE +IAN+D +A+GA+EAL+ +NK + I V Sbjct: 219 RVVNWSKEIAKGTIESLLL-QYAGSIEAIIANDDTIALGAIEALQKYGYNKGNKAKYIDV 277 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 G EA L+ G + GTV + QA+A + +A NL + TN+ I V Sbjct: 278 VGAGGSQEARDLIDKGFMTGTVNINYEAQAEAVYKIAMNLINNVSPIKDTNYTISEGFVV 337 Query: 316 V-----PY 318 V PY Sbjct: 338 VTGSYSPY 345 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 103/335 (30%), Positives = 177/335 (52%), Gaps = 28/335 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 K + T +AV+A+++ G A+ A+T IGV++ +DDNF +++R+ ++ A V L + Sbjct: 2 KSIFT-AAVLAALMAGTAS--AET-IGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIE 57 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D+Q D ++Q +Q++ +A V A+ I L D +AA + A+ +P+V+ N EP Sbjct: 58 DAQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINR 117 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 ++A YVG+ ++G + G A +G K GQ Q +L G+ H + RT Sbjct: 118 LPKNQA-YVGSKETDAGRL-GAEAACQLLKKKG----KAGQAQIYILMGDLAHQASRDRT 171 Query: 183 TYVIKEL---NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 + V + L KG+ + +A W A D W++ I+ + AN+D MA+ Sbjct: 172 SAVKETLAAGECKGVTIADER--SAAWMRTNAMDVTTNWIT--TGRPIDAIFANSDEMAI 227 Query: 240 GAVEALKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA +K+ + V GV+A + L ++ G L TV +A Q+ + D A LA Sbjct: 228 GAIQALKAAGVSKNDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALAR 287 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 GK +D +V+ VP+ V +N+A+++ K Sbjct: 288 GK--------SVDRQVM-VPFELVTPENMAKYNNK 313 >UniRef50_C5RPN7 D-galactose-binding protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPN7_CLOCL Length = 347 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 154/314 (49%), Gaps = 20/314 (6%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 F + +GV ++ D++ + +K + P V++ + + QN+ S Q++ +D Sbjct: 29 FSSPISRRTINVGVILFSLDNSIAAQFKKEFDNLQNEYP-VKVSVLNPQNNVSVQDEMLD 87 Query: 77 VLLAKGVKALAINLVDPA-----AAGTVIEKARGQNVPVVFFNKEPS--RKALDSYDKAY 129 LL + + + PA A IE+ R N P+V FN P + Y +A Sbjct: 88 SLLKNNIDLI---IAIPASTKEDAVRNFIERVRPYNTPLVMFNIPPDVVKNISKDYARAA 144 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 189 + S ++G +QG+++ W D N D +Q+VL++G A+ RT V L Sbjct: 145 FAIPASDKTGEMQGEIVRDLWNNKSIIDKNDDNILQYVLVRGPKEDVTADKRTQGVTSIL 204 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMD-AWLSGPNANKIEVVIANNDAMAMGAVEALKAH 248 GIKTE LQ W A AK ++ +L+ NKIE +IAN+D +A+GAV+ L+ + Sbjct: 205 ESSGIKTELLQSFATNWTEAVAKSYIENIFLT--YGNKIEAIIANDDDLAVGAVKGLQKY 262 Query: 249 NKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 ++ IPVFG+ PEA+ L+ G ++GT++ D A+ + + NL + Sbjct: 263 GYNTGSKSKYIPVFGLSGTPEAINLIDKGLMSGTIIVDLKKVAQDLYAIGNNLINNANPT 322 Query: 303 DGTNWKIDNKVVRV 316 + TN K + V+ + Sbjct: 323 ENTNLKSEGGVIII 336 >UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridiales RepID=C4ZH94_EUBR3 Length = 325 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 101/340 (29%), Positives = 168/340 (49%), Gaps = 27/340 (7%) Query: 1 MNKKVLTLSAVMASMLFGA--------AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 M +K+ + +++ +F A A +++ +I +++ DD ++V A +Q+A Sbjct: 1 MKRKLAYMLSILLCGVFLATGCGSQTTGAGSSNVKILLSVNAIDDFRQTLVDTA-QQEAD 59 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE-KARGQNVPVV 111 A VQL + D++++ Q + I A+G A+ L P + T +E KA ++P+V Sbjct: 60 A-RGVQLDVFDAEDNIENQVEHIKKAAAEGYDAI---LCGPVSTDTAVELKANAGDIPIV 115 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 FFN P+ K L S + YVG+D +G Q + + +A ++D +I V+ KG Sbjct: 116 FFNSCPNEKQL-SEGQYIYVGSDESVAGQYQAEYVLDKFA-------DRD-EINVVIFKG 166 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 GH RT V K L G K + D A WD A + + +L +K + VI Sbjct: 167 PKGHSATIGRTKGVKKTLEASGKKINYVFEDYANWDGDTAGEMFELFL--KTGSKADCVI 224 Query: 232 ANNDAMAMGAVEALK--AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 NND MA+G +EA K + +S+P+ GVDA + +++G +A TV + Q KA Sbjct: 225 CNNDGMALGVIEACKNAGIDLNSLPILGVDATADGCTAIENGDMAFTVYQSGSGQGKAAI 284 Query: 290 DLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 D A+ L G+ D D V VP+ VD +N++ + Sbjct: 285 DAARKLISGQSVQDIEGAADDGLYVWVPFEKVDSNNVSSY 324 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/339 (30%), Positives = 170/339 (50%), Gaps = 42/339 (12%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 K++L L+AVMA + F +A A IGV++ +DDNF++V+R A+ ++ P+V + M Sbjct: 2 KRIL-LAAVMA-INFSCSAGAES--IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQME 57 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D+QND ++Q Q+ +A GV A+ +N VD A + + A VP+V+ N++P+ + Sbjct: 58 DAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPAN--V 115 Query: 123 DSY-DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 D + ++ +D SG +Q + + A K V++ G+ + + R Sbjct: 116 DRLPETQAFIASDEAVSGTLQAQEVCRLLKAR-----GKGKSANVVVMMGQLSNQASRQR 170 Query: 182 TTYVIKELNDKGIKTEQLQL------DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 T K+++D I T + TA W +A + M WLS + + VIAN D Sbjct: 171 T----KDVHDV-IATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANAD 223 Query: 236 AMAMGAVEALKAHNKSSIP-----VFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 MA+GA++A+++ + +P V G+D + + L++ G L TV DA Q D Sbjct: 224 EMAIGAIQAMRS---AGLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALD 280 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 A LA GK D T W VP+ + N+A+F Sbjct: 281 TALMLARGK-KTDRTIW--------VPFQLITPTNVADF 310 >UniRef50_UPI0001C359CF galactose ABC transporter, periplasmic galactose-binding protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C359CF Length = 237 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 67/188 (35%), Positives = 110/188 (58%), Gaps = 9/188 (4%) Query: 18 GAAAHAADT--RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 G + AA+ RIGVTIY+YDDNFM + R+ + Q + ++++ +++ +Q +Q QI Sbjct: 50 GGSTEAAEKKLRIGVTIYRYDDNFMKLYREELRQYLEETYQAEVVVRNARGEQEEQISQI 109 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS--RKALDSYDK--AYYV 131 + + G + +NLVD AG + + +P+VF N+EP +A +K + Sbjct: 110 NDFIEAGYDGIIVNLVDTDHAGVIADSCHEAGIPLVFINREPKADEQARWKAEKMAVSCI 169 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 GTDSK++G QGD+I + + DLN+DG + +V++ GE + D+ +RT Y IK L Sbjct: 170 GTDSKQAGTYQGDIILE---TDTRGDLNRDGIVSYVMIMGEKDNEDSVSRTEYSIKALEA 226 Query: 192 KGIKTEQL 199 G+KTE+L Sbjct: 227 GGMKTEKL 234 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 89/327 (27%), Positives = 159/327 (48%), Gaps = 27/327 (8%) Query: 7 TLSAVMASMLFGAAAHA-ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDS 64 T + + A++L A + A AD R+GV++ ++D N+++ + +A+++ A+ P V L + DS Sbjct: 13 TRAVLFATVLCLAGSTALADLRLGVSVGQFD-NYIAYLVRAMQERARQVPGGVTLQVEDS 71 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 +D +Q Q++ +A+ V A+ +N D AA G + E+A +P+V+ N P + + Sbjct: 72 GSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPA 131 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 +VGTD + G +Q + +A+ G+ +L G H D RT Sbjct: 132 --GVVFVGTDERRLGQMQMEYLAEKMG----------GKGDLAILLGRLAHDDTRKRTAG 179 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 V K++ + + ++ + W + D + WLS + + + V+ANND M +GA A Sbjct: 180 V-KDVLARYPQIRVVEEQSGDWQRDKGLDLTNNWLS--SGREFDAVVANNDEMGIGAAMA 236 Query: 245 LKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG 304 L+ + + V G+D P+ LA + G LA T+L D + D+A L K G Sbjct: 237 LRQAGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVR-KDVVQG 295 Query: 305 TNWKIDNKVVRVPYVGVDKDNLAEFSK 331 W +P + DN +F + Sbjct: 296 DVW--------IPVHLITPDNHTQFQR 314 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 89/318 (27%), Positives = 161/318 (50%), Gaps = 27/318 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 G + IGV++ +D NF++++R +I+++AKA + + D++ D +Q DQ+ Sbjct: 13 LGCSTSVLAETIGVSMAYFDQNFLTIIRHSIDKEAKAR-GISVQFEDARGDVGRQADQVQ 71 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 ++ GV A+ ++ V+ A + + +P+V+ N+ P L + +VG+D K Sbjct: 72 NFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLPA--GVVFVGSDEK 129 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 +SG +Q + +A+ A QG ++ G A RT V +++ K K Sbjct: 130 QSGTLQMEELAR-LANYQG---------NVAVMIGNLTDAGALQRTKDV-EQVVAKYPKM 178 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK--SSIP 254 + +Q +A + ++ D M W++ N I++V ANND MA+GA+ AL+ K S + Sbjct: 179 KVVQKQSANYSRSEGMDLMLNWIT--NGESIDIVAANNDEMAIGAIMALQQAGKQGSKVL 236 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V G+DA P+ L + SG + TV DA Q KA+ D+A+ + G+ D W Sbjct: 237 VGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGE-KLDPYYW------- 288 Query: 315 RVPYVGVDKDNLAEFSKK 332 +P+ V N+ +++ K Sbjct: 289 -IPFELVTPANMQKYAAK 305 >UniRef50_A6BKJ6 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=A6BKJ6_9FIRM Length = 347 Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 18/268 (6%) Query: 27 RIGVTIYKYDDNFM-SVVRK---AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 +G+ +Y D FM S +R+ I Q V + D++ S+Q Q+ + A+ Sbjct: 51 HVGIAVYDRSDTFMESYIRELEDKIGQTKILGKKVSYEIYDAEGIGSRQEKQLQEMYAQD 110 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 + +NLV+PA+A +V+ A+ ++PV+ FN+E K L +YVGTD++ +G++Q Sbjct: 111 YDVMLVNLVEPASAASVLTDAKDADIPVILFNREIDEKDLKISKNVWYVGTDARAAGVMQ 170 Query: 143 GDLIAKHW-AANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE-----LNDKGIKT 196 G+L+ W ++ D N +G + +VL++GE H DA RT+ ++ LN KG Sbjct: 171 GELLKDLWKKQSRILDWNGNGMLDYVLVEGEESHFDAIRRTSGFLETGAELPLNQKGNI- 229 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 A W A +K A L +E VI NND MA+G + K N + Sbjct: 230 ------LAEWKRELAYEKFAA-LDDEAVQNVEAVICNNDDMALGVYDYYKEKNLKLPVII 282 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQ 284 G++ E + SG + GT+ N +Q Sbjct: 283 GINNSEEMHQKIMSGEMYGTIDNKMEDQ 310 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 155/318 (48%), Gaps = 37/318 (11%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 +LT A S+++ + + RIG++I DD F + + A+E +AK PD L++ ++ Sbjct: 17 LLTACAQKKSIVYKSKKY----RIGLSIPASDDVFRNKIINAMENEAKNLPDTDLVVVNA 72 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D ++Q QI L+A+ A+ + VD + + A +P++ N + Sbjct: 73 KGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIISVNNFLKNQD--- 129 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT- 183 D A YVG+DS SGI++ + K LN G + V+LKGEP H A RT Sbjct: 130 -DAAAYVGSDSITSGIMEAEYAVKQ--------LNGKGNV--VILKGEPNHETAIKRTEG 178 Query: 184 --YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 V++ + I EQ W + W+ N K + ++ANND MA+GA Sbjct: 179 FKQVLQNYPEIKIIDEQY----GDWKRTLGMQITENWIK--NGTKFDAILANNDEMAIGA 232 Query: 242 VEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 + ALK +N +++ V G+DA P+AL L+K G+L TV +A Q A L G+ Sbjct: 233 IMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGE- 291 Query: 301 AADGTNWKIDNKVVRVPY 318 KI NK + VPY Sbjct: 292 -------KI-NKKIFVPY 301 >UniRef50_Q08255 Glucose/galactose-binding lipoprotein n=5 Tax=Treponema RepID=MGLB_TREPA Length = 403 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 118/229 (51%), Gaps = 37/229 (16%) Query: 109 PVVFFNKEPS--------RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLN 159 P+VFFN++PS A++ DK YYVG D+K G IQG +I A+++ D N Sbjct: 39 PLVFFNRQPSDPLTGKVDMAAMNWNDKTYYVGFDAKFGGSIQGKMILDFLASSESSVDRN 98 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELND-------------------KGIKTEQLQ 200 DG I +VL G+ GH D++ RT + + L K K +L+ Sbjct: 99 GDGIIGYVLCIGDVGHNDSKVRTEGIRRALGTWTGSSDPGQAKEGQAVVGGKSYKVVELE 158 Query: 201 ------LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIP 254 D + W+T A + M +W++ A+KI++VI+NND MAMG ++A ++ +P Sbjct: 159 GKAMTGTDGSTWNTNSATESMGSWVA-KFADKIDLVISNNDGMAMGCLQA--SNYPRGLP 215 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 +FG DA +A+ V G L GTV + + QA A + +NL DG D Sbjct: 216 IFGYDANADAVESVGKGELTGTVSQNVDAQAVAVLQIIRNLLDGSSGED 264 >UniRef50_C2L0L6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=1 Tax=Oribacterium sinus F0268 RepID=C2L0L6_9FIRM Length = 501 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 18/178 (10%) Query: 157 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 D N DG IQ+++L+GE GH DA RT Y + L +GI E+L A W A+A+ KM Sbjct: 322 DKNGDGVIQYLMLEGEAGHQDAIVRTEYSVNTLMQQGIPMEKLSYAIANWSRAEAQSKMM 381 Query: 217 AWLSGPN-ANKIEVVIANNDAMAMGAVEALKAHNKSSIP------VFGVDALPEALALVK 269 + P ++IE++++NND MA+G L A++K +P ++G+D L VK Sbjct: 382 QFY--PEFQDRIELILSNNDDMALG---VLDAYDKIGLPKDKRPFIYGIDGTTVGLEAVK 436 Query: 270 SGALAGTVLNDANNQAKATFDLAKNLADG-KGAAD-GTNWKIDNKVVRVPYVGVDKDN 325 G L GTV ND QAKA F LA LA G KG D G N K++R+PY V +++ Sbjct: 437 KGNLMGTVYNDEQGQAKALFQLAYRLATGKKGPEDEGEN----KKIIRLPYQKVRRED 490 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 48/134 (35%), Positives = 81/134 (60%), Gaps = 4/134 (2%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQ--LLMNDSQNDQSKQNDQ 74 A+ +IGVTIY D F+S A E++ K A V+ L ++ Q+ QN+Q Sbjct: 54 ASKEKKKLQIGVTIYDNYDTFLSGYMTAFEKEISKKRAEGVEIGLFRYNAAGSQALQNEQ 113 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 ++ +L K L +NLVD A +I+ A+ +NVP++FFN+E + L +++ YY+G D Sbjct: 114 VEEMLEKDCDVLCVNLVDRTAPSEIIDMAKKKNVPIIFFNRELVEEDLAQWNQLYYIGAD 173 Query: 135 SKESGIIQGDLIAK 148 +K+SG++QG++ A+ Sbjct: 174 AKQSGVLQGEMAAE 187 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 92/320 (28%), Positives = 147/320 (45%), Gaps = 29/320 (9%) Query: 15 MLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQ 74 +L + AA RIGVTI + DDNFM+ VR +E+ A+ +VQL D+Q D +Q +Q Sbjct: 12 LLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKE-NVQLQFEDAQGDVVRQINQ 70 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 + L++ V A+ + VD +A + A +P+V+ N+ P + L V ++ Sbjct: 71 VQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVLPK--GVTTVASN 128 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND-KG 193 E+G +Q +A+ G+ L+ G+ R+ V + L D G Sbjct: 129 DIEAGQLQMRYLAEKMG----------GKGTIALIMGDLAQNSTHDRSEGVKQVLKDYPG 178 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-- 251 I + Q TA W + D WL + ++ANND MA+GA AL+ K+ Sbjct: 179 ITIVEQQ--TAEWQRNKGMDLTSNWLLA--GRTFDAIVANNDEMAIGAAMALQQAGKAKG 234 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 + + G+D LP+ LA +K G LA +V D QA A + G+ D W Sbjct: 235 EVAIVGIDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGE-PVDAEVW---- 289 Query: 312 KVVRVPYVGVDKDNLAEFSK 331 VP+ + + +A F + Sbjct: 290 ----VPFQLITPEQVAVFEQ 305 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/338 (29%), Positives = 158/338 (46%), Gaps = 45/338 (13%) Query: 5 VLTLSAVMASMLFGAAAHAAD---TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 VL ++ +MA L AD TRIGV I +DD F+ ++ ++ A +++L+ Sbjct: 51 VLFITGLMA--LVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIF 108 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 D++ D KQ QI + + V + + V+ A + + + +V+ N+ P+ Sbjct: 109 VDAKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLP 168 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA- 180 D YVG++ G Q A H + G I ++ G EA Sbjct: 169 ----DGVAYVGSEELRFGEEQAKYAASH---------SDGGNIGIIM-----GMMTVEAA 210 Query: 181 --RTTYV---IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 RT V KE + I +Q TA+W +Q M+ W++ + +K++++I+NND Sbjct: 211 ILRTQGVEDFFKEKPEYNIIRKQ----TALWQRSQGMVVMENWIN--SGDKLDIIISNND 264 Query: 236 AMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 MA+GA++AL+A K V GVDA P+ L +K+GAL TV D +QA+ D Sbjct: 265 DMALGAIQALRAAGKLDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAID---- 320 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A G N +K+ +P V KDNLAEF K Sbjct: 321 -----AALSGINKTPRDKITWIPAELVTKDNLAEFEAK 353 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 166/334 (49%), Gaps = 32/334 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 ++K L + +A++ G+A A +G D F+ + A + +K+ P V++ Sbjct: 4 ISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVN 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +D+ ND SKQ DQID +A+ V A+ + VD +EKA +PV+ + + Sbjct: 64 FSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQSAG- 122 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 K +VG+ + ++G +QG+ + +H L K +I + L+G PG + Sbjct: 123 -----GKYTFVGSKNIDAGRLQGEYMKEH--------LPKGAKILY--LEGTPGLSHTQE 167 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANNDAMAM 239 R L + T L +A +D A+ + W+ S P K + ++A ND MA+ Sbjct: 168 RKKGFEDALGRSDVTT--LASLSANYDRAEGMKVTEDWIQSFP---KFDAIVAANDQMAL 222 Query: 240 GAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 GA+EAL+ ++ + + GVD +AL +K+G ++ T+ DA QAKA F++ + L G Sbjct: 223 GALEALQGADRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKG 282 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + D K+ VP+ + KDN+ +++KK Sbjct: 283 E---DAPAEKL------VPFASITKDNVGQYAKK 307 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 90/315 (28%), Positives = 145/315 (46%), Gaps = 26/315 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 F A AA IGV + KY+DNF +++R +E+ A D + M + Q+D Q Q Sbjct: 15 FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQV-ALLDADIFMENGQDDVELQMRQFR 73 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+ V A+ + +V +A ++ A VP+VF N+ P + +VG+D Sbjct: 74 NLVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNPEPATWPAL--TAFVGSDEL 131 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ESG +Q + +A+ N G + V+L G+P + + RT V K + K Sbjct: 132 ESGTLQMEELARR--------ANYKGNV--VILVGDPSNKSSVMRTEDVEKVVA-KYPDM 180 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS--IP 254 + +Q W+ +QA + W+ ++ ANND MA+GA+ L+ K + Sbjct: 181 KVVQKKIGNWERSQAATIVIEWVK--QGVDFSIIAANNDEMAIGAIMGLEKTGKKAGDYL 238 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V G+D P+ L L+ G +A +V DA QA D A +A G+ A W Sbjct: 239 VGGIDGTPDGLKLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIW------- 291 Query: 315 RVPYVGVDKDNLAEF 329 VP+ + +N +F Sbjct: 292 -VPFKLITPENRQQF 305 >UniRef50_C0D489 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D489_9CLOT Length = 398 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 83/329 (25%), Positives = 159/329 (48%), Gaps = 30/329 (9%) Query: 29 GVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAI 88 GV Y + D F++ R+ + A A +++ DSQND + Q++ ++ L + K L I Sbjct: 65 GVIWYNFADTFIANARQCLGNVAAADGTIKISDADSQNDITVQDNNLNNFLTQKPKYLVI 124 Query: 89 NLVDPAAAGTVIEKARGQNVPVVFFNK-EPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 N ++ AA ++ + + +F N PS A + +YV + S +SG G+ I Sbjct: 125 NNINNPAADSIAKTCTDNGIVAIFANTTSPSDDAFAQNENLWYVSSVSTQSGENMGNAIV 184 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT----------- 196 +++ ++ WD N +G++ F+LL+G D R++Y + + G + Sbjct: 185 EYFNTHENWDRNGNGKVDFILLQGMQTFSDTINRSSYSLAAIEGAGYELGKNIGGDDVTG 244 Query: 197 ----EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN--- 249 + + + ++A+ ++A ++ + I+ ++A+ND A+GA+ AL+AH Sbjct: 245 VKGGDSINGVLCNFSRSEAQTNVEALIANY-GDDIDCILADNDDEALGAIAALQAHGYFT 303 Query: 250 --KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA----- 302 ++IPV GVDA +K+G L T LN+ AK+ + L L G+ Sbjct: 304 DESNTIPVVGVDATVAGCESIKNGTLLETSLNNPVKLAKSIYKLMYLLEKGEAVTTESIG 363 Query: 303 -DGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 DG + ++ + + Y+ + KDN+ + S Sbjct: 364 LDGVH--VEGHKILIDYISITKDNVEQAS 390 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/281 (30%), Positives = 135/281 (48%), Gaps = 18/281 (6%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 ++GV+I + DD F+S +R + + AK PD+ L D Q KQ Q+ + V + Sbjct: 22 QVGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFEDGQGAVDKQLSQVQSFINGKVDVI 81 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 +N VD + + AR VP+++ N+ PS + D Y+G+D E+G +Q + Sbjct: 82 IVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKMG--DGISYIGSDEIEAGRLQMGYL 139 Query: 147 AKHWAANQGWDLNKDGQ-IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 A D+ KD + + ++KG + DA T KE+ K + DTA Sbjct: 140 A---------DMVKDRKNVNIAIMKGLLSN-DATRFRTQGAKEVIAKHPNMHVVMEDTAK 189 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALP 262 W + M+ W+ KI+++ AN D MA+GA A+K++ + I V G D P Sbjct: 190 WMREDGMNLMNNWIL--TGQKIDILSANADEMAIGAAMAIKSNGLNIGKDILVGGTDGGP 247 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 L +KSG L TV DA +QA D+A+ A G+ D Sbjct: 248 NGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKD 288 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/306 (28%), Positives = 148/306 (48%), Gaps = 29/306 (9%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG ++D F+ + ++ +V+++ D++ND Q Q++ L+A+GV A+ Sbjct: 48 IGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGVDAIM 107 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 VD A ++++A+ VPVV N++ + + YVG+DS ++G IQ + +A Sbjct: 108 AIPVDLIATEFIVDRAQQAGVPVVLINRDSVER------EDAYVGSDSLQAGTIQMEEVA 161 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 L G+I ++ G+ GH A+ T K++ D+ E + T W Sbjct: 162 AV--------LKGKGKI--AIMNGQMGHT-AQINRTLGNKQVVDQYPGMEVVIEGTGGWS 210 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF-GVDALPEALA 266 + K+ M++W+ + + V+ANND MA+GA+ A + VF G+D P+AL Sbjct: 211 REKGKELMESWIE--SGQTFDAVVANNDEMAIGAIMAAEEAGIVDELVFAGIDGTPDALD 268 Query: 267 LVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + G L +V DA Q + + A LA G+ A TN +PY + K N+ Sbjct: 269 YMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESAEKMTN---------IPYETITKRNV 319 Query: 327 AEFSKK 332 E+ KK Sbjct: 320 DEYKKK 325 >UniRef50_Q2CJV7 Putative rhizopine uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJV7_9RHOB Length = 300 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/273 (32%), Positives = 138/273 (50%), Gaps = 24/273 (8%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 + G AA A IG ++ ++D +++R+++ A V L++ ++ ND + Q DQ+ Sbjct: 1 MTGGAACA--ETIGASMAQFDGTIPTMLRESMVAQAGQLMSVDLVVENAANDSATQLDQV 58 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + LA GV A+ + +V+PAAA + E A+ VP+VF N+EP D YVG+D Sbjct: 59 NGFLAAGVDAVIVQIVEPAAAAAMTEVAQAAGVPLVFVNREPGNVG-QLPDSQSYVGSDP 117 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK--- 192 +G+++ + + A QG D ++ G P +A RT + L + Sbjct: 118 GGAGLLEIAEVCRLLGA-QGTDPAP-----IYVMTGAPSG-EAAVRTQDIHDVLGNGACD 170 Query: 193 ---GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 GI EQ +A W A+A M AWLS + V+AN+D MA+GA++A+KA Sbjct: 171 VMLGIVAEQ----SAGWSRAEADGLMTAWLS--TGEPFDAVVANDDEMALGAIDAMKAAE 224 Query: 250 KS--SIPVFGVDALPEALALVKSGALAGTVLND 280 S I V G+D P AL V G L TV+ D Sbjct: 225 WSMQDIIVGGIDGTPAALEAVAKGDLDVTVIED 257 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 95/298 (31%), Positives = 152/298 (51%), Gaps = 31/298 (10%) Query: 14 SMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA-KAAPDVQLLMNDSQNDQSKQN 72 + +F AA+ A IGVTI +D F++V+ +A++ +A K +Q+ D+ D +KQ Sbjct: 9 TAMFLAASSAYAGDIGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQVEFADA--DVNKQL 65 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY-DKAYYV 131 QI +A V A+ +N+V+ A T+ + A +P+V+ N PS LD KA ++ Sbjct: 66 SQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSD--LDQLGPKAAFI 123 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ---FVLLKGEPGHPDAEARTTYV--- 185 G+ ++G +Q + + L ++G+ + ++++G AE R+ V Sbjct: 124 GSQEIDAGTLQAKEVCRV--------LKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDV 175 Query: 186 --IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 E N I EQ TA WD +A+D M W++ +K V++NND MA+GAV Sbjct: 176 VATPECNFMKIIDEQ----TAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVN 229 Query: 244 ALKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 +LKA + V G+DA EA+ VK+G L TV DA Q + D A LA G+ Sbjct: 230 SLKAAGWEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGE 287 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 17/270 (6%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +IG + D ++ I ++ + ++L + D++ D S Q Q+ + G L Sbjct: 52 KIGFCVTNRDQ--FQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLL 109 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK-AYYVGTDSKESGIIQGDL 145 IN VD + +I A +VP VFFN+ PS ++ +D+ YYVG + G G Sbjct: 110 MINCVDAESIQEIINAAG--DVPCVFFNRMPSDHSV--FDENHYYVGMSDYDCGYDMGKF 165 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 +A+ W D NK VL G G + +RT + K L D G K + DTA Sbjct: 166 MAE-WLK----DNNKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYKVNWVFEDTAE 220 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS---IPVFGVDALP 262 WD ++A DK ++ + K + + ANND MA+G +EAL A S+ P+ G+DA Sbjct: 221 WDRSKAMDKFTQFMG--SGKKFDFIAANNDDMALGCIEALTAAGYSAPFDFPIAGIDATE 278 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLA 292 L V G L T + F++A Sbjct: 279 NGLLAVGDGTLTATFDQSPSKMTNYCFEIA 308 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 89/300 (29%), Positives = 140/300 (46%), Gaps = 35/300 (11%) Query: 36 DDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA 94 DD F ++ + AK+A DV+ L D++ D + Q DQ++ ++ A+ + +D Sbjct: 79 DDAFAMQLKNTFAEKAKSAGLDVEFL--DAKGDSNLQIDQLNEAISNKAAAIVLLAMDGT 136 Query: 95 AAGTVIEKARGQNVPVVFFNKEPS-RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN 153 + +EKAR +PVV N++ + K + S +D +E+G +QG+ +A H N Sbjct: 137 SIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL-------SDDREAGRMQGEFMASHLPPN 189 Query: 154 QGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKD 213 + V L GE A R + DK + L W A+ Sbjct: 190 A----------KVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSWSKAEGMK 239 Query: 214 KMDAWLSG-PNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSG 271 M WLS P N V+A ND MA+GA++ALKA N+ + V GVDA P LA V++G Sbjct: 240 AMTLWLSFFPEING---VVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGLAAVEAG 296 Query: 272 ALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 L+ TV DA QA L + GK + + +P+ + ++N+A+F K Sbjct: 297 ELSQTVKQDAEGQAAGAVTLVQGFLSGKAPTESLD---------IPFTSITRENVAQFVK 347 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 126/255 (49%), Gaps = 24/255 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 D +IGV++ ++ F +R+ +E+ A +V+ ++ D+QND S QN+Q++ L+ +GV Sbjct: 48 GDMKIGVSLSTLNNPFFVSIREGVEE-AAGKENVETVITDAQNDSSTQNNQVEDLITQGV 106 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 + IN VD A T +EKA N+PV+ ++ + L S ++ +++ E G + G Sbjct: 107 DLIVINPVDSTAIATSVEKANEANIPVICVDRGSDQGELVS-----FIASNNVEGGKLAG 161 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 + I + N + + L+G PG R + N K L T Sbjct: 162 EYILEKVGENA----------EVIQLEGIPGASSTRERGEGFEEATNG---KINLLASQT 208 Query: 204 AMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 A +D A+ M+ L P+ ++ V ND MA+GA EA+KA K + + G D Sbjct: 209 ANFDRAEGMTVMENLLQAHPD---VKAVFCQNDEMALGASEAIKASGK-DVTIVGFDGNE 264 Query: 263 EALALVKSGALAGTV 277 +A+ V+ G L+ TV Sbjct: 265 DAIKAVEEGNLSATV 279 >UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridium butyricum RepID=C4ILH6_CLOBU Length = 325 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/329 (25%), Positives = 151/329 (45%), Gaps = 17/329 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 VL +A+ S +T++ +I +D F + +E A +V+L + + Sbjct: 12 VLMFTALGCSKKGSQGTSIGNTKVFASIAD-EDKFKQTIVSGMESYADE-NNVELDVAIA 69 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 N+ Q QI KG A+ LV+ A +I A ++PV+F N EP L S Sbjct: 70 HNNVETQVQQIKDAKTKGYDAIVCILVESDTAQQIINAAG--DIPVIFTNVEPDSGRLKS 127 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 DK YVG+D E+ + + +++ + ++ VL +G A RT Sbjct: 128 -DKYIYVGSDENEAAKYTFESLKEYFKDKKSFNA--------VLFEGSMDSKSASVRTES 178 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + +L G + D A WD +AK +A+L N + + +I+NND MA+G ++A Sbjct: 179 LKSQLKKNGFDVNYVFQDDAGWDREKAKKMFEAFLK-LNVS-YDCIISNNDEMALGVIDA 236 Query: 245 LKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 ++ + + S +P+ G+DA EA + +G ++ ++ Q ++ A+ L +G + Sbjct: 237 MEENGIDPSKVPILGLDATQEACKAISNGKMSFSIKQSGEGQGESVIKAAQALKNGDKIS 296 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 N K + PY VDK N+ ++ + Sbjct: 297 KIENGDSSGKYIWYPYSKVDKSNVQQYMR 325 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/305 (27%), Positives = 143/305 (46%), Gaps = 29/305 (9%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 +G T+ + F+ V ++++A+ A ++L+ D++ KQ +Q++ +A+ V A+ Sbjct: 41 VGATMLSMQNEFIVNVHDEMDKEAQKA-GIELITVDAERSALKQVEQVESFIAQKVDAII 99 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 +N + A+ + KA +P++ N E S K + +VG+D ES I IA Sbjct: 100 MNPCEVEASSPAVAKALAAKIPIINVNSETSSKP------SAFVGSDDVESARIAMKFIA 153 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 G+ V++ G G A+ + +E+ + + L T WD Sbjct: 154 DKLG----------GKGNVVMMHGYMGQA-AQIKREQGAREILKQYPNLKLLAHQTGEWD 202 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALA 266 A+A M+ W+ ++I V A+ND M +GAV+AL A K + V +DA+P+AL Sbjct: 203 RAKAMSLMENWIQS-YGSQINAVFAHNDEMGLGAVKALTDAGLKDKVIVVSIDAIPDALQ 261 Query: 267 LVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 VK G+L TV +A Q A A G+ +K VP+ V KDNL Sbjct: 262 AVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQPF---------DKETLVPFQLVTKDNL 312 Query: 327 AEFSK 331 ++F K Sbjct: 313 SKFLK 317 >UniRef50_Q8GBR5 Putative mglB homolog n=1 Tax=Treponema maltophilum RepID=Q8GBR5_TREMA Length = 405 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/325 (28%), Positives = 145/325 (44%), Gaps = 26/325 (8%) Query: 5 VLTLSAVMA-SMLFGAAAHAA---DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 VL LS +MA ++L G A +A +G I ++ F+ +++ A +V+L Sbjct: 7 VLALSVLMAGTVLTGCAKKSAAGGKVVMGALIRNLNETFLRDYADNLKKLANE-NNVELK 65 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D +D + Q DQ++ LL +GVK I D AA + + + FF S Sbjct: 66 LLDGNSDVATQLDQLNTLLTQGVKYFVIVPQDTAATEQMAKAIGAKGGAAAFFKHSASVA 125 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 AL + + + +G IQ +I ++ D I +L+ G+ GHP Sbjct: 126 ALKTGKTFFLASSPESVAGDIQAQIIDDYFKTYP--DKAPGKTINMLLINGQLGHPAQVN 183 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R V++ L +G + DTA W +A+ KMDAWL+ N K VV+A ND MA+G Sbjct: 184 RRKGVLEGLASRGYTVNMVAEDTANWGAGEAQQKMDAWLAAHNG-KFNVVVAQNDDMALG 242 Query: 241 AVEALKAHNKS-----------------SIPVFGVDALPEALALVKSGALAGTVLNDANN 283 A+E++ + + +PV GVD + + + TVL D+ Sbjct: 243 AIESMLTNKYTDDPSDVTKDTNGDGTVLKVPVLGVDGTETGVRSMNENKMYATVLQDSIG 302 Query: 284 QAKATFDLAKNLADGKGAADGTNWK 308 Q+ F+L +A KG A G K Sbjct: 303 QSSTAFELVYQVAT-KGTAIGYTTK 326 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 82/310 (26%), Positives = 150/310 (48%), Gaps = 35/310 (11%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 A A + IG T+ + FM++++ A+E K +V+L++ND+++ KQ Q+D +A Sbjct: 41 AAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSFVA 100 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +GV A+ I+ VD A + ++ +PV+ + + + +VG+ ++ G Sbjct: 101 QGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGD-----QGQVWVGSSNENGGE 155 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT---YVIKELNDKGIKTE 197 I+ +A+ G+ + +L+G G + R V+K+ D I + Sbjct: 156 IEMKYVAEKLG----------GKGKIAVLRGPLGAFAEQGRFAGYETVLKDYPDIEIVFD 205 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPVF 256 Q T W +A ++ L+ +++ ++ ND MA+GA+EA+KA K I + Sbjct: 206 Q----TGNWQREEAMALIENLLTA--GTELDAIVCQNDGMALGALEAVKAAGKKDQITIT 259 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G+DA+ +AL +K+G L T DA Q D+A A G+ T ++D + Sbjct: 260 GIDAIVDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGE-----TVERMD-----I 309 Query: 317 PYVGVDKDNL 326 P+ V KDN+ Sbjct: 310 PFELVTKDNV 319 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 89/302 (29%), Positives = 143/302 (47%), Gaps = 43/302 (14%) Query: 5 VLTLSAVMASMLFGAAAHAAD----------TRIGVTIYKYDDNFMSVVRKAIEQDAKA- 53 +LTL M S +FG ++AD + V + + ++ V+ AK Sbjct: 10 ILTLG--MLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGANDAAKEL 67 Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 VQ+L +++ D Q I+ + KGV AL + + P AA T +KA + +PVV Sbjct: 68 GVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEKIPVVLI 127 Query: 114 NKEPSRKALDSYDKA-YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 + + + +DK +VGT + +G + G+ I+K K G + ++++G Sbjct: 128 DTDAN------WDKKKSFVGTGNIAAGKLGGEYISKKL---------KKGD-EAIIIRGV 171 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVI 231 PG + RT K L GIK ++Q A + +A M+ L + PN I+ V Sbjct: 172 PGDRTQDERTQGAQKALEAAGIKVVEIQ--PANSEREKAISVMENLLQTHPN---IKGVF 226 Query: 232 ANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 ND MA+GAV+AL+ K +I GVD P+AL +K G L GTV A+ ++D+ Sbjct: 227 CTNDEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTV-------AQNSYDI 279 Query: 292 AK 293 K Sbjct: 280 GK 281 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 88/308 (28%), Positives = 144/308 (46%), Gaps = 35/308 (11%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 +G+T+Y + F + A ++ A A V+L + D D + Q +Q++ +++ GV A+ Sbjct: 56 VGMTLYSLKNEFTVRLSNAAKKKA-AELGVELKIYDGNYDPNTQINQVETMISDGVDAII 114 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 +N D A ++KA N+PV+ N +DS YVG+ +G ++ IA Sbjct: 115 LNPQDAKACAVAVDKAAAANIPVIGVNTR-----VDSEKLTSYVGSKDVYAGELEMQAIA 169 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT---YVIKELNDKGIKTEQLQLDTA 204 G+ V+L G G R+ V+K+ D + E+ TA Sbjct: 170 DKIG----------GKGNIVILDGPLGQSAQLERSEGIQNVLKKYPDIKVLAEK----TA 215 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 264 W ++A M+ WL +KI+ V+A ND MA+GA +A++A K IP GVD + +A Sbjct: 216 NWSRSEAMTVMENWLQA--FDKIDAVVAENDEMALGARKAIEAK-KLDIPTIGVDGITDA 272 Query: 265 LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 L V+ G L T+ D Q ++A A G+ D W + + V KD Sbjct: 273 LDAVEKGTLIATIFQDGAGQGSKALEIAVAKAKGEN-VDKEYW--------IDFEPVTKD 323 Query: 325 NLAEFSKK 332 N+AEF ++ Sbjct: 324 NVAEFKQR 331 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 87/316 (27%), Positives = 138/316 (43%), Gaps = 51/316 (16%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG T+ + F+ V A+E AK V+L+ D++ KQ +Q++ + +GV A+ Sbjct: 34 IGATMLSMQNEFIVNVSDAMEAKAKEM-GVELITVDAERSALKQVEQVESFIGQGVDAII 92 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII------ 141 +N + A+ I+ A +P++ N E S K +VG+D ES I Sbjct: 93 MNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP------TAFVGSDDTESARIAMKYIA 146 Query: 142 -----QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 +G+++ H Q + +D + + LK PG +K L ++ Sbjct: 147 EKLGGKGNILMMHGFMGQAAQIKRDNGAKDI-LKANPG-----------LKLLAEQ---- 190 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPV 255 + WD A+ + W+ +KI + A ND M MGAV+AL+A K + V Sbjct: 191 ------SGEWDRAKGMSLTENWIQ-SYGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLV 243 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 VDA+P+AL VK G L TV +A Q + A A + K V Sbjct: 244 VSVDAIPDALQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAF---------EKEVL 294 Query: 316 VPYVGVDKDNLAEFSK 331 +P+ VDK N+ F K Sbjct: 295 IPFQLVDKGNVEGFLK 310 >UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic solute-binding protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EAM5_9LACO Length = 322 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/300 (26%), Positives = 138/300 (46%), Gaps = 18/300 (6%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 L+A M+ + RI V + D ++ + +I+ A + N Sbjct: 14 CFMLAATGCGMMTNESQSGNGKRIAVLTHTNDSPLINSLTSSIKNAASEKGATVDVYNSD 73 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 QN + KQ Q+ ++ A+ I VD A +I A +PVVF+N +PS+ L + Sbjct: 74 QNSE-KQIKQLKKVVQNHYDAILIRPVDADTAQEMI--AIAGKIPVVFYNFQPSKSVLKA 130 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 ++ YVG + + +G +Q + + H + + + +LKG+ G +E RT Sbjct: 131 -NQDVYVGPEEEMAGRLQANYVLDHTSKQE---------LNVAILKGQNGLV-SEKRTNT 179 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + L G + D+A W+ +A+ +M+ +L +V+ +NND MA+GA++A Sbjct: 180 FKETLEKSGRSVNYVFTDSANWEEEKAEHQMELFLK--TGQPCDVIASNNDDMALGAIKA 237 Query: 245 LK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 K AH K I V GVDA +A A + +G + T A Q + + A + +GK D Sbjct: 238 FKRAHKKLPI-VCGVDATADAKAKISTGEMGLTASQPAKIQGEKCIETALKMIEGKKITD 296 >UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRB6_ALIAD Length = 370 Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 83/295 (28%), Positives = 145/295 (49%), Gaps = 32/295 (10%) Query: 33 YKYDD--NFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINL 90 ++YDD +F++ ++K P+ Q++ ++Q ++ Q Q++ + +G K L + Sbjct: 66 WEYDDRPDFIAAMKKL-------DPNAQIIYANAQGSEATQLQQVESAITEGAKLLVVAP 118 Query: 91 VDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW 150 V+ AA T++ +A +VPV+ +++ +D YYV ++ E G +QG+ IA+H Sbjct: 119 VNGFAATTIVTEAAKAHVPVISYDRLIQNAKVD-----YYVSFNNVEVGKLQGEYIAQH- 172 Query: 151 AANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD----TAMW 206 K G + V+L G P P+A+ + ++ D K+ +L+L T W Sbjct: 173 -------TKKGGTV--VMLDGAPTDPNAK-QFAQGAHDVLDPLFKSGKLKLGYEQFTPNW 222 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEAL- 265 D+ QA +M L+ + N ++ V+A ND +A A++AL+ + IPV G DA L Sbjct: 223 DSQQALTEMQQALTRLH-NHVDAVLAANDNLAGAAIQALEQQHIKGIPVTGQDATDAGLH 281 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADG-KGAADGTNWKIDNKVVRVPYV 319 + G + TV +A A LA +L G K A N ++N VP V Sbjct: 282 RIYYEGTQSMTVYKPIKEEANAAAQLAYDLITGKKPPASLVNGTVNNGATNVPSV 336 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 75/272 (27%), Positives = 128/272 (47%), Gaps = 31/272 (11%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V L+M D++ D +KQ + + L+A+ V AL + D + V+ A ++P++ N Sbjct: 67 VDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNG- 125 Query: 117 PSRKALDSYDKAY--YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 D DK Y +VG +ESG I G W ++ N + Q +++G G Sbjct: 126 ------DIADKNYTAFVGCTDQESGEILG-----TW-----FNDNVEHGSQICIIEGPMG 169 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 R Y E E L TA W +A + WL+ +K++ ++ N Sbjct: 170 QSGQVGR--YAGFEEVGMLDNFEVLSCQTANWKRDEAMALAEDWLT-TYGDKLKAIVCEN 226 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 D MAMGA+ A KA ++ + + GVD L +A+ VK G L +VL D+ Q + ++A Sbjct: 227 DDMAMGALSACKAAGRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAVEVALQ 286 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + +G+ +++ D R+P+ + DN+ Sbjct: 287 IINGE------DYQKDT---RIPFHAITSDNV 309 >UniRef50_C9L3Z0 Galactose/glucose-binding lipoprotein n=5 Tax=Firmicutes RepID=C9L3Z0_RUMHA Length = 443 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/242 (28%), Positives = 105/242 (43%), Gaps = 60/242 (24%) Query: 109 PVVFFNKEPSRKALDSYDK--------AYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLN 159 P+V+FN++PS + DK YYVG D+ + +QG ++ ++ N D N Sbjct: 65 PLVWFNRQPSNSSTGELDKNALNFNKDTYYVGFDANQGAELQGQMVKEYIEKNADTIDRN 124 Query: 160 KDGQIQFVLLKGEPGHPDAEART------------------------------------- 182 DG I +VL G+ GH D+ ART Sbjct: 125 GDGVIGYVLAIGDIGHNDSIARTRGVRKALGTGVEKDGAINSEPVGTNVDGKQGAVKDGS 184 Query: 183 ------TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 T+V++EL + +K A WD A A + + W S ++I+VV++NND Sbjct: 185 LEAGGKTFVVRELGSQEMKNSA----GATWDAATAGNAIGTW-SSSFGDQIDVVVSNNDG 239 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 M M A NK +P FG DA +A+A + G GT+ A+ QA T + +N Sbjct: 240 MGMSMFNAWSKENK--VPTFGYDANSDAVAAIAEG-YGGTISQHADVQAYLTLRVLRNSL 296 Query: 297 DG 298 DG Sbjct: 297 DG 298 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 79/260 (30%), Positives = 123/260 (47%), Gaps = 21/260 (8%) Query: 41 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 100 SV R A E+ A+ + +L ++D Q +Q++ + KGV A+AI + DP A VI Sbjct: 41 SVERGAREKAAELGVKIVVLSPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVI 100 Query: 101 EKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 160 E AR +PVVF + + K + ++GTD+K + D I ++G D+ Sbjct: 101 ESARSAGIPVVFIDTKGINKGV------TFIGTDNKAGAKMAADFICDR--VSRGSDV-- 150 Query: 161 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLS 220 +L+G +AR L G+ Q A WD AQ + M+ L+ Sbjct: 151 ------AILQGIITQSTGKARADGAHAGLKGCGLNIVAEQ--PANWDRAQGRTVMENILT 202 Query: 221 GPNANKIEVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLN 279 K++ V A+ND MA+GAVEALK A + + V G DA P+A + +G + T+ Sbjct: 203 --RNQKLKAVFASNDNMALGAVEALKDADMLNDVIVVGFDANPDAAKSILAGEMTATIAQ 260 Query: 280 DANNQAKATFDLAKNLADGK 299 + N + A LA G+ Sbjct: 261 FSYNMGAYGVEKALELAKGR 280 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 148/334 (44%), Gaps = 40/334 (11%) Query: 18 GAAAHAAD--TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV-QLLMNDSQNDQSKQNDQ 74 G AAD ++G +Y + + + I++ A + +L + D D + Q Q Sbjct: 22 GKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANGIAELTVFDGNYDHATQASQ 81 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 D++ + +D AA VI KA +N+PVV N L S+ +G+D Sbjct: 82 FDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVGSNGPAKSDELVSF-----IGSD 136 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 +G + + + K + G I V+L G G+ E RT E N K + Sbjct: 137 DVAAGQYEAETLFKA--------IGDKGNI--VVLIGPEGNLGQELRT-----EGNKKAL 181 Query: 195 KTEQ----LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH-- 248 + L+ TA W ++A M WL+ + KI V+A ND M +GA+ A+KA Sbjct: 182 DANKDITVLERKTANWSRSEAMVLMQNWLTS-HKGKINGVLAQNDEMGLGAIAAMKAAGI 240 Query: 249 NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD-GTNW 307 + +IPV G+D + +A+ V+SG + ++ DA QA+ D+A G W Sbjct: 241 DPKTIPVVGIDGVTDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIGDSYQPLAECW 300 Query: 308 KI---------DNKVVRVPYVGVDKDNLAEFSKK 332 K +K+ VP+ V K+N AEF +K Sbjct: 301 KKYPQMAWGNGTDKLYSVPWTYVTKENAAEFLQK 334 >UniRef50_Q11DN9 D-xylose ABC transporter, periplasmic substrate-binding protein n=50 Tax=Bacteria RepID=Q11DN9_MESSB Length = 347 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 98/336 (29%), Positives = 156/336 (46%), Gaps = 35/336 (10%) Query: 7 TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV---QLLMND 63 T +AV+A + F + +A G TI NF K E KA + + D Sbjct: 4 TATAVLAGIAFSLSLSSAALAEGKTIGVSWSNFQEERWKTDEAAIKAQIEADGNTYISAD 63 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 +Q+ +KQ ++ L+A+G AL I D +A G +E A + +PV+ +++ L Sbjct: 64 AQSSPAKQLTDVESLIAQGANALIILAQDASAVGPAVENAVAEGIPVIGYDR------LI 117 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE---A 180 A+Y+ D+KE G +Q + +++ +G +V +KG P+A+ Sbjct: 118 ENPDAFYLTFDNKEVGRMQARAV---------FEVAPEG--NYVFIKGSSADPNADFLFE 166 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 V+KE D G + T W A A+ M+ +L+ N N++ V+A+ND A G Sbjct: 167 GQMEVLKEAIDSGKIKNVGEAYTDGWLPANAQRNMEQFLTA-NNNEVAAVVASNDGTAGG 225 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG- 298 A+ AL+A S+PV G D AL + G +V DA KA +A LA+G Sbjct: 226 AIAALEAQGLAGSVPVSGQDGDHAALNRIALGTQTVSVWKDARELGKAAAQIANQLAEGT 285 Query: 299 -----KGA---ADGTNWKIDNKVVRVPYVGVDKDNL 326 +GA A+G N K++ V + V + KDNL Sbjct: 286 AMDQVEGATKWAEGPN-KVEMNSVFLKPVPITKDNL 320 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 78/310 (25%), Positives = 147/310 (47%), Gaps = 36/310 (11%) Query: 3 KKVLTLSAVMASMLFGAAA------------HAADTRIGVTIYKYDDNFMSVVRKAIEQD 50 KK LT+ +A + A + D +IG+++ + F ++ + ++ Sbjct: 2 KKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVKE 61 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 AK +++++ D+Q+D +KQ + ++ LL +GV AL IN D +A T ++ A +PV Sbjct: 62 AKKQ-GIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 V ++ +++ V +D+ + G + D I + L K ++ L+ Sbjct: 121 VTLDRSAENGKVET-----LVASDNVKGGQMAADFIVEQ--------LGKGAKV--AELE 165 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEV 229 G PG R + K +D K + TA +D + + M+ L G P+ I+ Sbjct: 166 GVPGASATRERGSGFHKTADD---KLNVIAKQTADFDRTKGLNVMENLLQGNPD---IQA 219 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 V A+ND MA+GA+EA+++ K I V G D +A+ V++G ++ T+ K Sbjct: 220 VFAHNDEMALGAIEAIRSSGK-EILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAV 278 Query: 290 DLAKNLADGK 299 A+++ +GK Sbjct: 279 QAARDILNGK 288 >UniRef50_A6LYJ2 ABC-type sugar transport system, periplasmic component n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYJ2_CLOB8 Length = 187 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 12/194 (6%) Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 SG Q + IA ++ NK+ I+ VLLKGE + RT V + +KGI + Sbjct: 2 SGQYQAEYIADYFK-------NKN-NIKVVLLKGEKNPAATKGRTKAVKETFKEKGIDAD 53 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH--NKSSIPV 255 + D A W A+AK+ + +LS K + VIANND MA+G +++ K + + S IP+ Sbjct: 54 YVFEDNADWSMAKAKEMFNIFLS--TGRKFDCVIANNDEMALGVMDSFKENKIDTSLIPI 111 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 G+DA + + G L TV A +Q+K A L ++ N D K + Sbjct: 112 VGIDATSDGCKAIVDGGLQFTVYQSAKDQSKNAVQAAIQLGSNGELSNIENLAQDGKHIW 171 Query: 316 VPYVGVDKDNLAEF 329 VP+ V KDN+ + Sbjct: 172 VPFEKVTKDNVKNY 185 >UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 Tax=Rhizobium etli GR56 RepID=UPI00019034CB Length = 854 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 134/285 (47%), Gaps = 28/285 (9%) Query: 9 SAVMASMLFGAAAHAADTR-IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQND 67 +A +AS+ + A+ + IGV++ D F ++ ++ K ++L+ ++ D Sbjct: 3 TATLASIALAISVSVANAQTIGVSMTNLD-KFREMLVNGVDSHGKTISGLKLVTQNANGD 61 Query: 68 QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK 127 Q Q+ +A V A+ + L D + + A +P+++ N PS LD D Sbjct: 62 NELQKKQVQQFVADKVDAIIMMLSDGDLGPQMTKIAADAGIPLIYINTTPS-NLLDLPDN 120 Query: 128 AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART---TY 184 V +D K+SG ++ Q L K G+ + V+L GE H A RT Sbjct: 121 QVVVASDEKDSGTLE---------TKQVCSLLK-GKGRVVVLMGEVFHVAARTRTQDIAD 170 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 VI KG++ + Q A W A +M WL+ K + VIANND MA+GA+ A Sbjct: 171 VIATPECKGLEIVEQQ--AAYWSRDYADQQMQEWLAA--GVKFDAVIANNDEMALGAIRA 226 Query: 245 LKAHNKSSIP-----VFGVDALPEALALVKSGALAGTVLNDANNQ 284 +K K++IP V GVDA +ALA + +G L T+L A Q Sbjct: 227 MK---KANIPMKDVVVAGVDATDDALAAMVAGDLDVTILQSAVGQ 268 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 98/328 (29%), Positives = 151/328 (46%), Gaps = 25/328 (7%) Query: 1 MNKKVLTLSAVMA-SMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQ 58 MN++ L++V A +M+ A + A+ ++ + + F V E A+A A V Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVN 80 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L +D QN +KQ I+ L + V A+ I+ +D A IE+A VPVV + Sbjct: 81 LTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTID---- 136 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 R+ +VG D+ + G + + A A G L L+G+PG A Sbjct: 137 RRVDGVQGILAHVGADNVKGG--EAEASAMVAAFPNGAKLFH--------LQGQPGAGPA 186 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R V L+ K + + TA + A+A +A L+ K + +I ND MA Sbjct: 187 IDRNKGVHNVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAA--NGKPDAIICANDDMA 244 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 +GA+EA A N + + ++G DALPEAL V+ G LAGTV Q++ +A A Sbjct: 245 LGALEACAARNFTDVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKN 304 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNL 326 K T K K+V + + + KDNL Sbjct: 305 K-----TEPK--EKLVLLTPIVIGKDNL 325 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 96/319 (30%), Positives = 150/319 (47%), Gaps = 30/319 (9%) Query: 18 GAAAHAADTR-----IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQN 72 GAA + A+T+ IGV I F++V R+ I++ A A +V++ +D+ D SKQ Sbjct: 27 GAAGNTAETKEAKKKIGVLIPGPVGYFVAV-REGIDK-AAAENNVEITYSDAGWDASKQL 84 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YV 131 Q++ L++K V +AI VD AA T + A N+P++ F K Y+ YV Sbjct: 85 SQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEANIPILAFTNAIGDKENGEYEGLITYV 144 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 G + E+G + G+L AK +G + VL++G PG R V++ L D Sbjct: 145 GQNEVETGKLTGEL-AKSLLGEKGG--------KVVLIEGRPGTSPQINRRKGVMEAL-D 194 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-K 250 E + T+ W+ QA ++ + I+V+IA +D A+GA ALK N K Sbjct: 195 TNKNFEVVYTQTSNWEKEQALKIVEDLIQ--KNQTIDVIIAQDDNSAIGAGMALKEANLK 252 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 I V G+ E L VKSG + GT A + A +G+ K++ Sbjct: 253 DKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEEGYTAITAAVKYLNGE--------KVE 304 Query: 311 NKVVRVPYVGVDKDNLAEF 329 V ++ V V+K N+ F Sbjct: 305 -PVTQMKQVEVNKSNVESF 322 >UniRef50_C8W712 ABC-type sugar transport system periplasmic component-like protein n=17 Tax=Bacteria RepID=C8W712_ATOPD Length = 433 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 80/269 (29%), Positives = 115/269 (42%), Gaps = 66/269 (24%) Query: 102 KARGQNVPVVFFNKEPSRKALDSYDK--------AYYVGTDSKESGIIQGDLIAKHWAAN 153 K ++ PVVFFN++PS + D YYVG D+ + +QG ++ + A+ Sbjct: 48 KVENKDKPVVFFNRQPSNSSTGELDTNTLNFNKDTYYVGFDAVQGAELQGQMVLDYIKAH 107 Query: 154 QG-WDLNKDGQIQFVLLKGEPGHPDAEART------------------------------ 182 D NKDG I +VL G+ GH D+ ART Sbjct: 108 AAELDRNKDGIIGYVLAIGDIGHNDSIARTRGVRKALGTGIEKDGKIISDPVGTNTDGSA 167 Query: 183 -------------TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +Y I+EL + +K A WD A A + + AW S ++I+V Sbjct: 168 SVVQDGKLEVGGKSYTIRELASQEMKNTA----GATWDAATAGNAIAAW-SSSFGDQIDV 222 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 V++NND M M A K +P FG DA +A+A + G AGT+ + QA T Sbjct: 223 VVSNNDGMGMSIFNAWSKAQK--VPTFGYDANSDAVAAIADG-YAGTISQHPDVQAYLTL 279 Query: 290 DLAKNLADGKG------AADGTNWKIDNK 312 L +N DG +AD KID+K Sbjct: 280 RLLRNALDGADINTGIESADDAGNKIDSK 308 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 157/354 (44%), Gaps = 54/354 (15%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDD--NFMSVVRKAIE-QDAKAAPDV 57 +N++ + ++ML GA AA +I + + + +M I+ A V Sbjct: 2 INRRTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKV 61 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++ + D + D Q +QID L + A+ + D A+ I+KA VPV+ Sbjct: 62 EITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVIV----- 116 Query: 118 SRKALDSYDKAYY--VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 AL + K Y + D +E G I + +AK L G + VL++G G Sbjct: 117 --SALKTSSKNYTASIIVDDREGGRIIAEEMAKR--------LPSGGNL--VLMEGPIGQ 164 Query: 176 PDAEARTTYVIKELNDKGIKTEQ-LQL---DTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 R V D G++ L+L + W A+ + M+ WLS ++I V+ Sbjct: 165 SAQIERRAGV-----DAGLEAHSNLKLLADKSGNWSRAEGQALMENWLSA-YPDQINGVL 218 Query: 232 ANNDAMAMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 A ND MA+GA+EA+KA N S +PV +D +P+A V++G +A T+ A + + Sbjct: 219 AENDEMALGAIEAMKAANVDLSKVPVIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAV 278 Query: 290 DLAKNLADGKGAADGTNWKIDNKV--------------VRVPYVGVDKDNLAEF 329 DLA GT +K ++V VP++ +DKDN+ ++ Sbjct: 279 DLALR------QVIGTEYKPQSEVWNGLMEWKDGTQKDYVVPWLILDKDNVKKY 326 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 79/273 (28%), Positives = 129/273 (47%), Gaps = 19/273 (6%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG T+Y Y F++++ + +E+ A+ L+M D+Q D Q QI+ L+A+ V + Sbjct: 47 IGCTVY-YMTEFVTLMTEGMEKKAEELG-CDLVMLDAQQDAQNQITQIENLIAQKVDVII 104 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 + VD A IE +P+V N ++ + +YVG D ++ G+L Sbjct: 105 VAAVDSDAILPAIEMCDDAGIPLVGVNM-----LFNTEEPYHYVGPDD----VLAGELEM 155 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 ++ G G+ V+L+G G R L+ K L TA W Sbjct: 156 QNAIDEIG------GEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINVLADQTANWS 209 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPVFGVDALPEALA 266 +A ++ WL + KI+ ++A+ND MA+GA++AL+A + I V GVDA+ + Sbjct: 210 REEALTLVENWLE-TFSGKIDAIVAHNDEMALGAIQALEAAGLTDKIVVTGVDAILDGCN 268 Query: 267 LVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 VK G L GTV DA + A ++ +GK Sbjct: 269 AVKDGTLLGTVYQDAGLEGSEAVQKAYDVLEGK 301 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 80/276 (28%), Positives = 138/276 (50%), Gaps = 30/276 (10%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG+++ ++ F ++K IE++AK +++++ D+QND SKQ ++ L+ +GV AL Sbjct: 40 IGLSVSTLNNPFFVSLKKGIEKEAKKR-GMKVIIVDAQNDSSKQTSDVEDLIQQGVDALL 98 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 IN D +A T +E A VPVV ++ + +++ V +D+ ++G +A Sbjct: 99 INPTDSSAISTAVESANAVGVPVVTIDRSAEQGKVET-----LVASDN-----VKGGEMA 148 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT---A 204 + A++ L K ++ L+G PG R + I ++LQ+ T A Sbjct: 149 AAFIADK---LGKGAKV--AELEGVPGASATRERGSGF------HNIADQKLQVVTKQSA 197 Query: 205 MWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 +D + M+ L G P+ I+ V A+ND MA+GA+EA+ + K I V G D + Sbjct: 198 DFDRTKGLTVMENLLQGHPD---IQAVFAHNDEMALGALEAINSSGK-DILVIGFDGNKD 253 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 ALA +K L+ TV K + A ++ GK Sbjct: 254 ALASIKDRKLSATVAQQPELIGKLATEAADDILHGK 289 >UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZDA2_METPB Length = 308 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 80/277 (28%), Positives = 131/277 (47%), Gaps = 19/277 (6%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 +T++ + + D F+ ++ A+ A + + + + Q Q L Sbjct: 25 ETKLTFLMPEAGDRFLDSLQSAVVSTAASKFSASVEVAQAAGKGETQVVQARAALDAKPA 84 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 AL + VD A+A T+ E + +P+VF N+ PS ++ V + +G +Q Sbjct: 85 ALIVTPVDDASARTITEMSAAAGIPLVFVNRRPSGPV---TNRMAIVSANHLVAGRVQMR 141 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK-GIKTEQLQLDT 203 ++A+ L G + +L+G+ A+ RT V + L + G+K L + Sbjct: 142 MLAQR--------LGDRGNV--AILRGKDSDNAAQERTAGVKEILGQRPGLKL--LAEAS 189 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALP 262 A W QA+D++ AWL + K + + ANND MA+GAV ALKA S I V GVD Sbjct: 190 ADWSRRQAQDQVTAWLR--SGLKFDAIAANNDEMALGAVAALKAAGLSGKILVGGVDGTS 247 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 + +A VKSG ++ +VL DA Q + A LA G+ Sbjct: 248 DGIAAVKSGDVSVSVLQDAPLQGAQAVNDAVKLARGE 284 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 20/255 (7%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 R+GV++Y +F++ ++ ++ A+A ++LL N + D + Q Q+D + GV A+ Sbjct: 53 RVGVSVYDMS-SFITAGKEGMDAYAEAK-GIELLWNSANLDVNTQASQVDQYVNAGVDAI 110 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + V + + A+ +P++ N E L+S D A V D +G Q ++ Sbjct: 111 IVVPVQADSLQPQVASAKAAGIPLLAVNAE-----LNSTDIAGNVQPDDVAAGEAQMQMM 165 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 A G V+L+G G E T I+ + K E L DTA W Sbjct: 166 ADAIGGKGG----------IVVLQGPLGQ-SGELNRTKGIENVLAKYPDIEVLAKDTANW 214 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALA 266 +A +K+ W+S A +I V+A ND M +GA++ALK + ++PV G+D + + L Sbjct: 215 KRDEAVNKVKNWISAFGA-RITGVVAENDDMGLGALQALK-ESGVTLPVVGIDGIEDGLN 272 Query: 267 LVKSGALAGTVLNDA 281 VKSG GT+L + Sbjct: 273 AVKSGEFIGTMLQNG 287 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 23/299 (7%) Query: 1 MNKKVL----TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSV-VRKAIEQDAKAAP 55 M K+ L T+ ++ + L GA A+A +I + + + + A A A Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 L + D + D Q++ D + + A+ VD A IE+A+ +PV N Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 S+ L YD Y+ ++ E+G +++AK G KD ++ V+L+G G Sbjct: 123 VVSKTEL--YDA--YINSNDVEAG----EMLAKAVIDKAG----KDAKV--VVLEGMLGQ 168 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 A+ + I + + L+ +TA W A+A M+ +L+ + ++++ V+A ND Sbjct: 169 -SAQVQRLEGINNVLKQNSGVTILEQNTANWSRAEAITLMENFLT-SHGDQVQGVLAEND 226 Query: 236 AMAMGAVEALKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 MA+GA+E ++ H + +PV GVD + +AL VK G ++L DA+ Q++ DLA Sbjct: 227 EMAVGAIEGIRNHGLDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLA 285 >UniRef50_Q47NL4 Solute-binding protein n=26 Tax=Actinomycetales RepID=Q47NL4_THEFY Length = 372 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 109/223 (48%), Gaps = 16/223 (7%) Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A+ P ++ ++ D SKQ Q + +L +G L ++ VD AAG+++++A+ Q VPV Sbjct: 69 AELCPKCEVSYQNADQDVSKQQAQAEAMLTEGASVLVLDAVDAKAAGSIVQQAKAQGVPV 128 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD-LIAKHWAANQGWDLNKDGQIQFVLL 169 + ++ R A D YYV D+K G +QG LI A G+ Q +++ Sbjct: 129 IAYD----RLAEGGVD--YYVSFDNKTVGRVQGTALIEGMEKAGTA------GEGQVIMI 176 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 G P P+A A E+ D ++ + DT W +A+ +M+ ++ A+ I Sbjct: 177 NGSPTDPNA-ADFKAGAHEILDGQVEI-GAEYDTPDWSPDKAQQQMEQAITAVGADNISG 234 Query: 230 VIANNDAMAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSG 271 V + ND MA G + ALKA + P+ G DA + + SG Sbjct: 235 VYSANDGMAAGIIAALKAAGVDEMPPITGQDAELAGIQRIISG 277 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 125/268 (46%), Gaps = 21/268 (7%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++G +Y F + A+++ V+L + D + D QN+Q + ++ + Sbjct: 54 KVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFETMITQKYDG 113 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + +D A + KA N+PVV N + L S YVG++ +G +Q Sbjct: 114 ILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKLLS-----YVGSNDVIAGAMQAQA 168 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 + G+ V+L+G G R + L K + L++ TA Sbjct: 169 VVDA----------MGGKGNVVILEGPIGQSGQVERRQGNLSVLA-KYPNVKVLEMKTAN 217 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH--NKSSIPVFGVDALPE 263 W A+A + WL+ +A KI +I ND MA+GA+EA+KA + +IP G+D + + Sbjct: 218 WSRAEALSLTENWLTA-HAGKINGIIGQNDEMALGAIEAVKAKGLDPKTIPTAGIDGVSD 276 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDL 291 A+ VK+G +A +VL DA+ Q++ D+ Sbjct: 277 AVRAVKAGIMA-SVLQDASAQSQGALDV 303 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 138/312 (44%), Gaps = 50/312 (16%) Query: 33 YKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 92 Y Y F S ++ A E A + + + D+ D + QN QID + + ++ D Sbjct: 52 YNYCAKFRSYLKDATE-----AKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISND 106 Query: 93 PAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-- 150 + +E A+ +P V F S D YD YVG+ ++++G QG+ + + Sbjct: 107 LDGSIPALEAAKDAGLPYVSF--LTSVSGGDDYDGYIYVGSPNEDAGKAQGEYLCDAFPD 164 Query: 151 ---------AANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 A N +++ ++ L K +P+ + Y ++ D G+ T + Sbjct: 165 GASILYFTGAPNDQQYVDRKKGLEEALKK----NPNIKILDEYNVENSKDLGMSTAE--- 217 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDA 260 D+ LS +KI+ ++ ND A+G VEALK+ K SI V G+D Sbjct: 218 --------------DSLLS---YDKIDAIVCQNDDGALGVVEALKSAGKLDSIQVLGIDG 260 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 +AL ++ G + T L DA QA+A D+ + L G AD + V +P+ Sbjct: 261 SDDALQSIQDGEMTMTALQDAKAQAEAGADIFEKLKKGTDPADIED-------VNIPFKI 313 Query: 321 VDKDNLAEFSKK 332 V KDN+A++ K Sbjct: 314 VTKDNVADYLSK 325 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 24/278 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + S A A DT + + + ++ F ++ E AK L+ Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLI 60 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + S ++ +D+ ++ G++ A G D + + L+G G A Sbjct: 121 EVVS-----HIASDN----VVGGEMAGHFIEAKIGSDA------KVIQLEGIAGTSAARE 165 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAM 239 R + + KG K + L A +D + + M+ L+ P+ ++ V A ND MA+ Sbjct: 166 RGEGFMNAV--KGSKMQLLASQPADFDRTKGLNVMENLLAANPD---VQAVFAQNDEMAL 220 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTV 277 GA+ A++A K S+ + G D + +A V+ G LA TV Sbjct: 221 GALRAIQASGK-SVMIVGFDGTDDGIAAVERGQLAATV 257 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 27/276 (9%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG+ + + F ++K E++A+ + L+ D+Q+D +KQ I+ L+ K VK + Sbjct: 42 IGLAVSTQSNPFFVTLKKGAEEEAQKQ-GLTLITVDAQDDPAKQIASIEDLIQKKVKVIL 100 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 +N D A ++ A +PVV ++ +++ + A +V +D+ G + + + Sbjct: 101 VNPTDSDAVVGAVKAANAAGIPVVTLDR-----SVNGGEVASHVASDNVAGGKMAAEYLL 155 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIKTEQLQLDTA 204 + NQG V L+G PG A R VI + D + Q A Sbjct: 156 EKIG-NQG---------DVVELEGIPGASAARERGQGFHDVIDQAKDVKVVGRQ----PA 201 Query: 205 MWDTAQAKDKMDAWLSGPNANK-IEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 +D A+ M+ L ANK ++ V A+ND MA+GAV+AL+A + V G DA + Sbjct: 202 DFDRAKGLSVMENIL---QANKNVKGVFAHNDEMALGAVQALEAAGMKDVTVVGFDATDD 258 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A+ VK+G ++ TV K D AK + DG+ Sbjct: 259 AVNAVKAGKMSATVAQKPKLIGKTAVDAAKKIIDGQ 294 >UniRef50_A6WFF0 Solute-binding protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WFF0_KINRD Length = 362 Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 76/257 (29%), Positives = 114/257 (44%), Gaps = 18/257 (7%) Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 + DQ+ QN Q + G +A+ + +D AAAG ++ A +VPVV +++ A+D Sbjct: 78 TAEDQATQNAQGVQAIRDGAEAVVVVALDGAAAGDLVSAANSADVPVVAYDRLLKDSAID 137 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YY D G + G I + G I V+L+G+P +A Sbjct: 138 -----YYTSFDGGAVGELGGQAILDAIGTD-----TAGGAI--VMLQGDPADNNAGLFAA 185 Query: 184 YVIKELNDK-GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 L+ K + +E+ A W QA +M A L N ++ V D +A GA+ Sbjct: 186 GAHSVLDGKVDVASERY---VAGWSADQAAVEMRAALGELNGRRLLGVYTAYDGLAAGAL 242 Query: 243 EALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 +AL S +P+ G DA AL + +G TV D QA+AT DL ++ +GK A Sbjct: 243 QALDEAGLSGVPITGQDAETAALQRILAGTQTMTVYKDLPGQARATADLVADVLEGKTPA 302 Query: 303 DGTNWKIDNKVVRVPYV 319 T DN VP V Sbjct: 303 --TTGTTDNGAGAVPTV 317 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 114/242 (47%), Gaps = 27/242 (11%) Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS-RKA 121 D +ND + Q QI+ + GV + I V ++ A V VV N+ S + A Sbjct: 38 DGKNDVATQVSQIEQAVTLGVDGIIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNA 97 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 D++ VG D++ +G L+ K DL DG+ V L G G R Sbjct: 98 ADTF-----VGADNESTG---AALMKKVME-----DL--DGKGNIVELLGPMGSDGQVGR 142 Query: 182 TT---YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 + V+ E D + + D+A WDTA+A + WL+ ++ I+ V+A ND MA Sbjct: 143 SKGFDSVLAEYPDVKV----IASDSADWDTAKALTLTENWLT---SSDIQAVVAQNDGMA 195 Query: 239 MGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +GA +A+K A I V+GVDA + L + +G + GTV NQ K + DL NL Sbjct: 196 VGAAQAIKEAGLTDKIKVYGVDATSDGLNAIVNGGMTGTVSQGTENQGKISADLCSNLIY 255 Query: 298 GK 299 G+ Sbjct: 256 GQ 257 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 116/235 (49%), Gaps = 25/235 (10%) Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 I +AK +++++ D+ D +KQ ID LL G+ L +++ D V+ KA + Sbjct: 62 ISNEAKKYKNIKIVYKDAGGDTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVVSKAY-K 120 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +VPVV + +A++ Y+ + Y+G D+++ G G ++ ++G + +IQ Sbjct: 121 SVPVVVLD-----RAVEGYNYSVYIGPDNEKIGREAGKMVVDLLGNSEGRVI----EIQG 171 Query: 167 VLLKGEPGHPDAEARTTY--VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 +L HPD + + IK+ ++ I ++ W +A+DK++ L Sbjct: 172 LL----NSHPDIDRSKGFREAIKQCDNIKI----VRTVIGEWQKDEAEDKIEELL--KED 221 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP---EALALVKSGALAGT 276 I+++ A+ND MA+GA +A ++I + GVD L L LV G L GT Sbjct: 222 RNIDIIFAHNDYMALGAYKAAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGT 276 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 24/278 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + + A A DT + + + ++ F ++ E AK L+ Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDT-MAIVVSTLNNPFFVTMKDGAETRAKEL-GYNLI 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 59 VLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D ++ +D+ G + G+ I + + + + L+G G A Sbjct: 119 -----DVVSHIASDNVVGGEMAGNFIVEKVGE----------KAKVIQLEGIAGTSAARE 163 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAM 239 R + + KG E L A +D + + M+ L+ P+ ++ V A ND MA+ Sbjct: 164 RGEGFMNAV--KGSHMELLASQPADFDRTKGLNVMENLLAANPD---VQAVFAQNDEMAL 218 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTV 277 GA+ A++A K + + G D + +A V G LA T+ Sbjct: 219 GALRAIQASGK-EVMIVGFDGTDDGIAAVNRGKLAATI 255 >UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Proteobacteria RepID=Q2RXU3_RHORT Length = 334 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 76/273 (27%), Positives = 120/273 (43%), Gaps = 27/273 (9%) Query: 27 RIGVTIYKYDDNFMSVV-RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 RI V +Y F+ ++ R E A A ++ D + D + QNDQ + + A Sbjct: 29 RIAVLMYGNKAEFVQLMERYGKEHPAVKAGIAEVTFYDGRYDAAVQNDQAQMAINTKQDA 88 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + +N +D A + A+ +PVV N + TD + ++ D+ Sbjct: 89 IVVNPMDYEANIDIATNAKMAGIPVVVTNAR--------------LNTDEMTAEVVSDDV 134 Query: 146 IAKHWAANQGWDLNKDGQIQFVLL----KGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + + A L K G V++ KG G + E +K L+ Sbjct: 135 LGGYLEAKD--VLTKLGCKGNVVIIEGPKGGSGEIQRGQGNEKALAECPAGAVKV--LER 190 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH--NKSSIPVFGVD 259 TA W A+A D M WLS + KI VI ND MA+GA+EA+KA N + G+D Sbjct: 191 KTANWSRAEALDLMQNWLS-KHPGKINGVIGQNDEMALGAIEAIKAADLNVKDFAIAGID 249 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 + +AL VK+G + ++L DA Q + + D+A Sbjct: 250 GVTDALHAVKAGEMT-SILQDARGQIQGSIDVA 281 >UniRef50_A6TKU8 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKU8_ALKMQ Length = 328 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/312 (25%), Positives = 135/312 (43%), Gaps = 31/312 (9%) Query: 1 MNKKVLTLSAV--MASMLFGAAAHAAD----TRIGVTIYKY-------DDNFMSVVRKAI 47 M KK++ L A+ + +ML G + A + G T+Y+ D+F + + AI Sbjct: 1 MKKKLIVLLAITLIMAMLAGCTSPANNGAGGDENGETVYRVAYVARTQSDSFAAWLANAI 60 Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN 107 ++A ++ + + D Q S QN I+ + A+ I + A + E+A Sbjct: 61 SEEADKYDNIIIDVFDGQASDSTQNSLIENAITSNYDAIIIQPNNGEAQKSYAEQAVAAG 120 Query: 108 VPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 + + N ++ A V D E + D+ + N V Sbjct: 121 IITITTNAR-----IEGVQGASSVDADPYEQAKVNADVALEQIPQNA----------NVV 165 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +LKG PG+ A+AR KE DK + + A W+ +A M+ W+ +KI Sbjct: 166 VLKGPPGNFHADARRDSWQKEFFDKRPDVTIVGEEIANWNKDEAMTYMETWVQAN--SKI 223 Query: 228 EVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 + +IA ND MA GA+E ++ N + + +GVD EA+ L++ G + T L A + A Sbjct: 224 DAIIAMNDNMAAGALEVVRDDSNFAGMLSYGVDGTAEAVLLIQEGVMTQTSLQSAYDLAT 283 Query: 287 ATFDLAKNLADG 298 A D + L G Sbjct: 284 ALLDTSNKLLTG 295 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 148/310 (47%), Gaps = 36/310 (11%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++ +T+ + FM + + ++ +AA +VQL+ D+ D +KQ QI+ +++ +A Sbjct: 47 KVFMTVSNQQNEFMVGMAENFKEVGEAAGYEVQLM--DADLDATKQVSQIETAISENAEA 104 Query: 86 LAINLVDPAAA---GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 + LV+P + T +++A +PV + S A D +V D ++ G ++ Sbjct: 105 I---LVEPCSVDGLTTGLKEAHDAGIPVFVIHNNVS--ATDLVTSLIHV--DVRQGGELK 157 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 + + K D +D +I ++ G G D + + +K E + Sbjct: 158 MEQVIK--------DCGEDAKI--AIMTGTLGQ-DTTNQICGGYDAVLEKYPNVEVVFEG 206 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDAL 261 W A + WL+ + +I+ ++ NND MA+G V LK+ KS I V+G+DA Sbjct: 207 AGNWGATDAAPLAENWLA--SGKEIDAIVCNNDGMALGVVSVLKSAGKSEQIKVYGLDAT 264 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 E L V SG +A T+ D+ + + F++ ++L GK K+D + +VP V V Sbjct: 265 NEGLKAVDSGEMAATIYVDSKAEIEKAFEMLEDLKAGK--------KVDAE-YKVPSVLV 315 Query: 322 DKDNLAEFSK 331 K+N+ E+ K Sbjct: 316 TKENVKEYMK 325 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 126/279 (45%), Gaps = 19/279 (6%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN--DQSKQNDQI 75 G AA +G+ + + F + E A+ D +LL QN D Q + + Sbjct: 56 GMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAV 115 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGTD 134 + + +GV A+ + D A + +A + V+ F+ A++ + +VG D Sbjct: 116 ENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPD 175 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 ++ + G+ + G L + G++ V+++G PG +A R + G+ Sbjct: 176 NRMGAEMAGNAL--------GEALGEGGRV--VIIEGNPGADNATQRRLGFEDAIATHGL 225 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAMGAVEALKAHNKSSI 253 E L+ TA W+T +A A L+ P+ ++ V+A ND+MA+G +EAL A + I Sbjct: 226 --ELLESRTAHWETEEANQVFAAMLTAHPD---LQGVMAANDSMAIGVIEALDAAGRDDI 280 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 V G DA+P L +++ G + TV A DLA Sbjct: 281 LVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLA 319 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 146/329 (44%), Gaps = 28/329 (8%) Query: 6 LTLSAVMASMLFGAAAHAADT-RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 LTL+ S ++ AA T IGV + D ++ + A+++ A V+L + DS Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADE-KGVKLNITDS 77 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D + +Q++ LL + V A+ + +D A+ ++ N+P+ + E + + Sbjct: 78 KKDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVG 137 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y Y+G D +G +Q + + K N G V G G + R Sbjct: 138 YKS--YIGVDDTVAGQMQAEYLNK-LMPNGG---------NLVFAAGVYGASWTDRRKNG 185 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 K +N+ + Q + D AK M+ L + +I+ V+ANND MA+GA A Sbjct: 186 FDKTINENFKIVAEFQAKGSRDD---AKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASA 242 Query: 245 LKAHNKSS--IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 + +++ V GVD AL ++ G ++ TV D+ Q ++ + +G Sbjct: 243 IADAGRTAEFKAVVGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNG---- 298 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 +DN+ +P+ + KDNL+EF K Sbjct: 299 ----GNVDNRYT-LPFTLITKDNLSEFLK 322 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 133/295 (45%), Gaps = 21/295 (7%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 ++G + ++ F + ++++AK VQ+ + + ND + Q +Q++ L+ + V A+ Sbjct: 46 KLGFAVSTLNNPFFVAMSNGVQEEAKKL-GVQVTILNGNNDPATQLNQVEDLIQQHVNAI 104 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 +N D + T +E+A ++PV+ ++ ++ + A ++ ++S E+G + D + Sbjct: 105 ILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKG-----NVACFIASNSVEAGKMAADEL 159 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 K G+ Q V L+G G AEA E K + TA + Sbjct: 160 IKALG----------GKGQVVELQGVIG-TSAEADREKGFDEEIGKAPGIRVVARQTANF 208 Query: 207 DTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEAL 265 D +QA + M L PN I+ V A ND MA+GA++A++ K +I + G+D EA+ Sbjct: 209 DRSQALNVMQNILQAHPN---IQGVFAQNDEMALGALKAIQEAGKHNIKIVGIDGEKEAV 265 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 V G L + + + A L +G+ N + P+ G Sbjct: 266 NDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVNSPLHLVEKNTPFTG 320 >UniRef50_C7Q046 Solute-binding protein n=4 Tax=Actinomycetales RepID=C7Q046_CATAD Length = 361 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/282 (27%), Positives = 126/282 (44%), Gaps = 27/282 (9%) Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 P VQ+ ++ D + Q Q+D L KG K L ++ VD + ++KA V VV ++ Sbjct: 80 PGVQVDYYNAGQDATVQQTQVDTALTKGDKVLILDAVDSKSIQASVQKAHDAGVKVVAYD 139 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 + ++ +D+ YV D+ + G +QG + +N Q V++ G P Sbjct: 140 RL-AQGPVDA-----YVSFDNVKVGELQGTALLAALGSNAATQ-------QIVMINGSPT 186 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 P+A LN K +K + + DT WD A +M ++ A I V + N Sbjct: 187 DPNAAQFKQGAHSVLNGK-VKIGK-EYDTPNWDPNTANQEMAGAITALGAPNIHGVYSAN 244 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 D MA G AL A N +P+ G DA +AL +++G T+ +A A D+A Sbjct: 245 DGMAAGIATALSAANL-HVPLTGQDAQLDALQRIQAGTQTMTIYKPYKPEATAAADVAVE 303 Query: 295 LADGKGAAD---------GTNWKIDNKVVRVPYVGVDKDNLA 327 A G+ + G+ + +K++ P V VDK N+ Sbjct: 304 FAQGRTPGNDLLPDKQTSGSGNVVPSKLI-TPIV-VDKTNMC 343 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 79/302 (26%), Positives = 132/302 (43%), Gaps = 23/302 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 KK L +L A A + IG + + D + + ++ A+ + DVQ+ + Sbjct: 2 KKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKLA 61 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DS +D + Q + + + + V AL + DP + A+ +P++ N++P+ + + Sbjct: 62 DSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHM 121 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 +VG+D E G IQG+ I A L +L G G DA + Sbjct: 122 QYVTS--FVGSDEIEGGRIQGNFIVNTLAGKNAESL---------ILLGPLGQ-DAVTKR 169 Query: 183 TYVIKEL--NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK-IEVVIANNDAMAM 239 T +E+ K IK Q W+ + + L+G NK I V+++NND MA+ Sbjct: 170 TQGNEEIFAQHKNIKVVSKQ--EGRWERDRGLAIAENVLAG---NKGINVIVSNNDEMAI 224 Query: 240 GAVEALK--AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA+ A + I + G+DA P+AL + G L TV A Q ++A A Sbjct: 225 GAILATRKLGIKDEDITIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAK 283 Query: 298 GK 299 G+ Sbjct: 284 GE 285 >UniRef50_A6M1U2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1U2_CLOB8 Length = 315 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 136/287 (47%), Gaps = 31/287 (10%) Query: 3 KKVLTLSAVMASM---------LFGAAAHAADTRI-GVTIYKYDDNFMSVVRKAIEQDAK 52 +K++ LS ++ + L+ + DT I G++ + + + K I+++ K Sbjct: 5 RKIIYLSIIIVCICGLIIFAIYLYRTNSQKKDTFIIGMSQANLYEPWRISMNKEIQEEVK 64 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 +++++ D+ D KQ + I+ L+ G L +++ + + KA +++PV+ Sbjct: 65 KHSNIKIIFKDAGGDVEKQREDIEDLMNFGADLLIVSINNSKELTPTVRKAY-ESLPVIL 123 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 ++ A+D YD Y+G D++ G+ G+LIA N+ + ++Q +L Sbjct: 124 LDR-----AVDGYDYTLYIGADTRSIGVQAGELIANLAGNNKANVI----EVQGIL---- 170 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 D E + N K I ++ + W + +DK++ L + + ++ A Sbjct: 171 DSSTDKEITDGFKEAISNYKNIAIDRTIVGN--WQKNETEDKLEEIL--KDDKDVNIIFA 226 Query: 233 NNDAMAMGAVEALKAHNKSSIPVFGVDAL--PE-ALALVKSGALAGT 276 ++D MA+GA A + N +I + GVD L P+ + LV++G L GT Sbjct: 227 HSDYMALGAYYATVSTNSKNIKIIGVDGLEGPQGGIDLVRNGILQGT 273 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 130/264 (49%), Gaps = 23/264 (8%) Query: 1 MNKKVLTLSAVMASML--FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA-KAAPDV 57 +NKK+ ++ ++ ++ F +IG+ + ++ F ++ E++A K D+ Sbjct: 3 INKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDL 62 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L DSQND +K+ ++ L+ GV AL IN D A +E A N+PV+ +++ Sbjct: 63 VVL--DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQA 120 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + S ++ +D+ I+G +A + ++ D + G I V ++G PG Sbjct: 121 NGGKITS-----HIASDN-----IKGGEMAAEYVLDKFKD--EKGPINVVEIQGIPGASA 168 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANNDA 236 R + DK K + + A +D + M+ + + PN I+VV A+ND Sbjct: 169 TRDRGEG-FHNIMDKNDKFNFISIQAADFDRQKGLQVMENIIQANPN---IQVVFAHNDE 224 Query: 237 MAMGAVEALKAHNKSSIPVFGVDA 260 MA+GAV+A+KA +++ V G D Sbjct: 225 MALGAVKAIKASGINAL-VIGFDG 247 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 23/278 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNF-MSVVRKAIEQDAKAAPDVQLLM 61 KK+ L+A MA + A A + +I + F + + R A++ + ++Q+L Sbjct: 2 KKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQVL- 60 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 DSQ KQ ++ + +G + ++ D A + + + +PVV ++ + Sbjct: 61 -DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDR-----S 114 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 + + K + G ++ + G GD + + G D+ VLL G+PG R Sbjct: 115 VKTDKKVPHFGANNYKGGQAIGDFVKARFP--NGADI--------VLLTGQPGSSSNIER 164 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN-ANKIEVVIANNDAMAMG 240 T + L G K + T W ++ +++ L P+ + +V+++ ND MA+G Sbjct: 165 TQGIRDSLKAGGSKYRLVADQTGNWMRSEGMRIVESVL--PSLPKRPQVILSANDDMALG 222 Query: 241 AVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGT 276 A+EAL++ + V G DA+PEALA V+ G LA T Sbjct: 223 AIEALQSQGLKPGEVMVTGFDAVPEALARVRDGWLAAT 260 >UniRef50_P77269 ABC transporter periplasmic-binding protein yphF n=58 Tax=Bacteria RepID=YPHF_ECOLI Length = 327 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 70/267 (26%), Positives = 128/267 (47%), Gaps = 21/267 (7%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLL 60 + +L ++ ++ S LF AA T IG IY + + VR+ ++ AK ++ VQL+ Sbjct: 8 TRNLLLMATLLGSALFARAAEKEMT-IG-AIYLDTQGYYAGVRQGVQDAAKDSSVQVQLI 65 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 ++Q D SK++ +D L+A+ V A+ ++ V + + +A +PV+ +N ++K Sbjct: 66 ETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSSRTVRRASEAGIPVICYNTCINQK 125 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +D Y AY VG D E G G+ A ++ A NK Q + ++ E + Sbjct: 126 GVDKYVSAYLVG-DPLEFGKKLGNAAADYFIA------NKIDQPKIAVINCEAFEVCVQR 178 Query: 181 RTTYVIKELNDKGIKTEQL---QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R + +E+ + Q+ Q T + +K+ +S P+ N I + + Sbjct: 179 RKGF--EEVLKSRVPGAQIVANQEGTVLDKAISVGEKL--IISTPDLNAI---MGESGGA 231 Query: 238 AMGAVEALKAHNKSS-IPVFGVDALPE 263 +GAV+A++ N++ I VFG D E Sbjct: 232 TLGAVKAVRNQNQAGKIAVFGSDMTTE 258 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 145/342 (42%), Gaps = 55/342 (16%) Query: 5 VLTLSAVMASMLFGA----AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 V T+ V ++LF + + + IG ++ + V+ + I+ ++ DV L Sbjct: 22 VATICIVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDV-LE 80 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 DS D Q Q++ + + V + IN VD G+ +EKA+ +PV+ Sbjct: 81 TRDSGMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVI--------- 131 Query: 121 ALDS--YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 A+D+ Y++++ GT ++ + A A K G+I F++ + + A Sbjct: 132 AVDALIYNRSFVDGT------VVSNNYQAGEQCAKDLMKRRKKGKILFLV---QSENKSA 182 Query: 179 EARTTYVIKELNDKGIKTE---------QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 R + L G K E QL+L + + K K I+V Sbjct: 183 IDRIKGFKETLEKAGWKYENVGELECQGQLELSQPLVEKVLNKTK-----------DIDV 231 Query: 230 VIANNDAMAMGAVEALKA-HNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 V+A ND AMGA+ AL A H S + V+G D PEA ++ +A T K T Sbjct: 232 VMALNDPSAMGAMAALDAEHMLSDVLVYGADGSPEAKTMIYENKMAATSAQSPRTTGKKT 291 Query: 289 FDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++ + DGK K + + + VP + KDN+ ++S Sbjct: 292 VEMLYKILDGK--------KTEKQCI-VPVSLITKDNINDYS 324 >UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMP8_9FIRM Length = 376 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 75/280 (26%), Positives = 129/280 (46%), Gaps = 28/280 (10%) Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN 107 EQ A DV+L +D++ D +Q + I L++ GV L I +D A TV+++A Sbjct: 55 EQFKAAGYDVELTYSDNETD--RQVNDIQNLISDGVNLLVIAAIDGEALNTVMDEAADAG 112 Query: 108 VPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 +PV+ +++ A+ +YY+ D+ G +QG + + D K I+F Sbjct: 113 IPVIAYDRLIKSDAV-----SYYISFDNYTVGTLQGQYVIDTLDLDNAGD--KTYNIEFT 165 Query: 168 LLKGEPGHPDAEA--RTTY-VIKELNDKG---IKTEQLQLD---TAMWDTAQAKDKMDAW 218 G+P +A Y +K D G + + Q D TA WDT A ++M Sbjct: 166 --AGDPADNNAGYFFNGAYDTLKPYLDAGTLNVVSGQTDFDSVATAAWDTQTALERMQNI 223 Query: 219 LSGPNAN--KIEVVIANNDAMAMGAVEALKAH--NKSSIPVFGVDALPEALALVKSGALA 274 L+ A+ +++V + +ND+ A+G +A+++ K+ + + G D LA + G + Sbjct: 224 LASYYADGTQLDVALCSNDSTALGVTQAIESDYAGKNDVLITGQDGDEANLANIVDGKQS 283 Query: 275 GTVLNDANNQAKATFDLAKNLADGKGAADG----TNWKID 310 TV N+A T DLA+ + G D + W D Sbjct: 284 MTVYKAVANEAVVTLDLAEAMLKGDTIDDSLITNSKWDFD 323 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 76/277 (27%), Positives = 125/277 (45%), Gaps = 24/277 (8%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLL 60 +K + LSA + S+ +A A D I + + ++ F ++ E AKAA +L+ Sbjct: 7 HKVSVLLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAE--AKAAELGYKLI 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 DSQND SK+ ++ L +GVKA+ IN D A I A N+PV+ ++ + Sbjct: 64 ALDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHG 123 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D ++ +D+ G + G+ IA+ N + + L+G G A Sbjct: 124 -----DIVSHIASDNIAGGELAGEFIAQQLGKNA----------KVIQLEGIAGTSAARE 168 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + E L A +D ++ + M+ L+ ++ V A ND MA+G Sbjct: 169 RGEGFSNAVTANNF--ELLSSQPADFDRSKGLNVMENMLAAN--GDVQAVFAQNDEMALG 224 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTV 277 A+ A++A K I V G D E +A V+ L+ TV Sbjct: 225 ALRAIEAAGK-DILVIGFDGTDEGIAAVRRQQLSATV 260 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 71/255 (27%), Positives = 116/255 (45%), Gaps = 29/255 (11%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 + G T ++ F V+ K+I + + D QL+ D D SKQ DQI+ ++ +GV+A+ Sbjct: 42 KFGYTCMTMNNPFFQVLEKSIRAEVEKNGD-QLITMDPAMDVSKQIDQINDMITQGVEAV 100 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 +N VD +E + N+P++ F+ E D YVG+D+K +G + GD + Sbjct: 101 FLNPVDWEGVRPGLEALKKANIPIINFDTE----VKDMNYVTAYVGSDNKNAGKVCGDDL 156 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA-EARTTYVIKELNDKGIKTEQLQLDTAM 205 K + N G + + G A E + ++ E + KG L T+M Sbjct: 157 VKRY-PNGGKIAILNCPTMNSINDRIAGFKSAIEGKNFTIVAEQDGKG------DLQTSM 209 Query: 206 W---DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 D Q+ + A + G ND A+GA+ A K+ +S I ++GVD P Sbjct: 210 KLADDILQSHSDIVAIMGG------------NDPTALGALAACKSAKQSKILIYGVDGSP 257 Query: 263 EALALVKSGA-LAGT 276 +A + SG GT Sbjct: 258 DAKKEIASGGQFVGT 272 >UniRef50_B0PGT6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PGT6_9FIRM Length = 375 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 72/294 (24%), Positives = 129/294 (43%), Gaps = 27/294 (9%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 AA A R+ D F + + +++ A+ +++L + D + +N ++ + Sbjct: 54 AASAEKKRVCFVARASADTFAAWMTNEMKKAAEQYDNIELTCVSGEGDDNTENGLLEDCI 113 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD-SYDKAYYVGTDSKES 138 K + + + AA ++ +PV+ N + LD S D + GT Sbjct: 114 TKQYDLVIVQSNNNAAQAPYVKNLVDAGIPVITTNPTTHQSDLDGSDDNSVLAGT----- 168 Query: 139 GIIQGDLIAKHW--AANQGWDLNKDGQIQFVLLKGEPGHPDAEART----TYVIKELNDK 192 G + D +A+ AA ++ ++ + V+L+G G+ AE R TY E D Sbjct: 169 GTVDADPVAQAQVSAARAVSEVPQNANV--VVLRGPSGNYHAEKRREAWDTYFFNERPDV 226 Query: 193 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK------ 246 I E D A W++ +A M++W+ I+ +I+ ND MA GA+EA++ Sbjct: 227 TILYE----DYANWNSDEAMTLMESWVQA--GTHIDAIISMNDNMAAGAIEAIRGDSNYV 280 Query: 247 -AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A ++ +GVD + L+K G L T L A++ AK D A + G+ Sbjct: 281 NADGTTNFLAYGVDGTAQGCLLIKEGLLTATALQSASDLAKKNMDYAAKVLSGE 334 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 73/281 (25%), Positives = 130/281 (46%), Gaps = 24/281 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFM---SVVRKAIEQDAKAAPDV 57 + +++L +SA +A++L A A +AD +I + + N ++ ++ A+ DV Sbjct: 4 ITRRMLIISAGLATVLTAAPAFSAD-KIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDV 62 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 L++ +++ +KQ ++ L+ +G+K L I+ D AA I++ +PV+ Sbjct: 63 DLIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITL---- 118 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 ++LD +VG +K G + G IA+ G+ V +KG+P Sbjct: 119 -ERSLD-IPVTLHVGPHNKPIGTLAGKYIAEAL----------KGKGNVVEIKGDPAVAP 166 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A R + + IK + A WD +A M+ L A +I+ V A+ND M Sbjct: 167 AVERHEGFAEAIAGTEIKV--IAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNM 224 Query: 238 AMGAVEALKA--HNKSSIPVFGVDALPEALALVKSGALAGT 276 A GA+ A++A +K I + G+D A+ V G L T Sbjct: 225 AFGALRAIQAAGRDKEGILIIGIDGENAAIRAVAKGDLTAT 265 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/305 (22%), Positives = 136/305 (44%), Gaps = 30/305 (9%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 + V I +D+ F S V A+++ + D + + DS+ D + Q Q++ + G +A Sbjct: 68 EVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQA 127 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + VD + ++ + VP++ FN + ++ D +VG D G + G L Sbjct: 128 IICLAVDAKQSEPIVRACKEAGVPLIAFN-----RIFENCDS--FVGAD----GAVAGSL 176 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 +A+ G G+ ++ G G + R +++ L + + + Sbjct: 177 LARFTGEKTG------GKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQVVIEGAGD 230 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPVFGVDALPEA 264 W +A ++ WL + I+ ++ ND MAMG A++ KS I V GV+ P+ Sbjct: 231 WKRDKALQLVETWLQ--SGTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVCGVNGDPDG 288 Query: 265 LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 + V+ G +A TV + + QA+ + A G+ K ++K++ +P+ V D Sbjct: 289 INAVRDGKIAATVFQNPDRQAEEALEAALQYIHGE--------KPESKIM-IPFELVTAD 339 Query: 325 NLAEF 329 N+ ++ Sbjct: 340 NVDDY 344 >UniRef50_A6X2R7 Periplasmic binding protein/LacI transcriptional regulator n=53 Tax=Bacteria RepID=A6X2R7_OCHA4 Length = 351 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 80/280 (28%), Positives = 131/280 (46%), Gaps = 21/280 (7%) Query: 52 KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 K ++L ++ D SKQ Q + ++++G K + ++ VD AAA ++++ A+ Q++ V+ Sbjct: 57 KICESCKVLYLNADGDASKQQQQFNSVISQGAKVIVLDAVDTAAAASLVKLAQSQDIKVI 116 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 +++ D +YV D++ G + + KH ++G +K G +Q + G Sbjct: 117 AYDRPIPDATSD-----FYVSFDNEAIGKSIAESLVKHL-KDKGVAGDKGGVLQ---ING 167 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA---NKIE 228 P A + L D G KT + DT W A K W SG ++I Sbjct: 168 SPTDAAAGLIKNGIHAGLKDSGYKT-LAEYDTPEW----APSKAQQWASGQITRFNDQIV 222 Query: 229 VVIANNDAMAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 V+A ND A GA+ A+KA + PV G DA AL L+ SG T+ + A Sbjct: 223 GVVAANDGTAGGAIAAMKAAGIDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVAAE 282 Query: 288 TFDLAKNLADGKGA-ADGTNWKIDNKVVRVPYVGVDKDNL 326 +A L +G+ A+ T + +K+ VP V V DNL Sbjct: 283 AARVAGQLLNGETPKAEATLYNTPSKLF-VPVV-VTADNL 320 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 117/259 (45%), Gaps = 34/259 (13%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 D ++GV++ + F VR I QD + ++D+QND +KQN I+ L+ K V Sbjct: 47 DLKVGVSLSTLSNPFFVSVRNGI-QDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVD 105 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 L IN VD +A ++ A +PV+ ++ D V ++S + G Sbjct: 106 VLIINPVDSSAITPAVKDANDAGIPVITVDRSS-----DGGKVLTLVASNSTKG----GQ 156 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI------KTEQ 198 + AK+ L KD +I L+G PG R KG K + Sbjct: 157 MAAKYMI----EKLGKDAKI--AELQGIPGASATRER---------GKGFDGAAKGKLDI 201 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 + TA +D A+ + L G N + I + + ND MA+GAV+A+KA K I + G Sbjct: 202 VSKQTAGFDRAKGLTVTENILQG-NGD-IVGIFSQNDEMALGAVQAVKAAGK-KITIVGF 258 Query: 259 DALPEALALVKSGALAGTV 277 D + + VK+G +A TV Sbjct: 259 DGEADGIKAVKAGDMAATV 277 >UniRef50_P25548 Multiple sugar-binding periplasmic receptor chvE n=76 Tax=Bacteria RepID=CHVE_AGRT5 Length = 354 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 76/286 (26%), Positives = 125/286 (43%), Gaps = 32/286 (11%) Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 Q+A D+Q +D N Q QI+ ++ KGVK L I +D V+++A Q + Sbjct: 54 QEAGYKTDLQYADDDIPN----QLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGI 109 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 V+ ++ R +S D +YY D+ + G++Q I G G L Sbjct: 110 KVIAYD----RLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDG-----KGPFNIEL 160 Query: 169 LKGEPGHPDAEARTTY-----VIKELNDKG---IKTEQLQLD---TAMWDTAQAKDKMDA 217 G P D A Y V+K D G +K+ Q+ +D T WD A A+ +MD Sbjct: 161 FGGSP--DDNNAFFFYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDN 218 Query: 218 WLSGPNAN-KIEVVIANNDAMAMGAVEALKAHNKSS----IPVF-GVDALPEALALVKSG 271 LS + K++ V++ D +++G + +LK + +PV G DA ++ + +G Sbjct: 219 LLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYGTKDQPLPVVSGQDAEVPSVKSIIAG 278 Query: 272 ALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 T+ D AK T ++ + +GK +N V VP Sbjct: 279 EQYSTIFKDTRELAKVTVNMVNAVMEGKEPEVNDTKTYENGVKVVP 324 >UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESX5_9FIRM Length = 357 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 76/309 (24%), Positives = 136/309 (44%), Gaps = 37/309 (11%) Query: 12 MASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN--DSQNDQS 69 MA+M G + + IGV++ D ++ +K E K ++ +N + D + Sbjct: 17 MAAMALGGCSSSKKKVIGVSLPTQD---LARTQKDQEYLTKYLTEMGYEVNVQFGKGDAN 73 Query: 70 KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY 129 Q I+ ++ GV L I+ D ++ VIE A N+PV+ ++ L++ Y Sbjct: 74 IQASSIENMITSGVAGLIISPFDSSSMTKVIELAHENNIPVISYD----SLCLNTEYIDY 129 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIK-- 187 Y D + G Q I H +G G ++ G+P A+ TY K Sbjct: 130 YSADDLEGIGACQAQYIVDHLGVAEG-----KGPFNIEIVAGDP----ADNNATYFYKGA 180 Query: 188 ------ELNDKGIKTEQLQLDTAM-----WDTAQAKDKMDAWLSGPNANK-IEVVIANND 235 L D + Q++ A+ WD ++A+ +MD+ LS +K ++ V+ ND Sbjct: 181 MDVLSPYLEDGSLVVPSGQIEFAVCGTPEWDGSKAQSRMDSILSTYYTDKRVDAVLTQND 240 Query: 236 AMAMGAVEALKA--HNKSSIPV---FGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 +A+GA+ +LK+ + S +P+ G D ++ + +G TV D + AK D Sbjct: 241 GIALGAISSLKSVGYGSSDMPLPITTGQDCDIASIKSILAGEQTMTVFKDISVLAKNAAD 300 Query: 291 LAKNLADGK 299 + +L G+ Sbjct: 301 VIDSLVKGE 309 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 84/283 (29%), Positives = 127/283 (44%), Gaps = 23/283 (8%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 AHAA +IG + F +++ E AKA D +L+ D+ D +KQN+ I LL Sbjct: 29 AHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGD-ELIFLDANGDVNKQNNDIQDLLT 87 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + V L IN V+P A I A+ VPV+ ++ +++ ++G D+ + G Sbjct: 88 RKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDR-----SINGGGVTAHLGRDNVKMGK 142 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQ--FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 GD + +L K G + + ++G+ G AR L G K Sbjct: 143 AVGDAVL--------AELKKKGTTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKI-- 192 Query: 199 LQLDTAMWDTAQAKDKM-DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 + A + A A M D + P+ ++VV A+ND MAMGA++ L K + V G Sbjct: 193 VAGPYAEYTRANAVTAMQDLLQAHPD---VKVVYAHNDDMAMGALKVLAEAGKKDVFVAG 249 Query: 258 VDALPEALALVKSG-ALAGTVLNDANNQAKATFDLAKNLADGK 299 VD L EALA + G T LND T A+ + GK Sbjct: 250 VDGLSEALASMAGGDQYVATALNDPRYLGDMTVQTARAIKAGK 292 >UniRef50_A9KQP6 Putative solute-binding component of ABC transporter n=4 Tax=Clostridiales RepID=A9KQP6_CLOPH Length = 355 Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 34/223 (15%) Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 +DA D+Q ND Q Q QI+ +++ G K L I ++ + GTV+ +A+ + + Sbjct: 58 KDAGYEVDLQYASNDVQT----QVSQIENMISNGCKLLVIASIEGDSLGTVLAQAKKKGI 113 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD---GQIQ 165 V+ ++ R ++S +YY D+ G QG+ I + LN + G Sbjct: 114 SVIAYD----RLIMNSDAVSYYATFDNYMVGTKQGEYIKEK--------LNLETAKGPFN 161 Query: 166 FVLLKGEPGHPDAEARTTY-----VIKELNDKG---IKTEQLQLD---TAMWDTAQAKDK 214 + G+PG D AR Y V+K D G +K+ + + TA W T A+++ Sbjct: 162 LEIFTGDPG--DNNARFFYGGAMDVLKPYVDGGVLVVKSGSVAFEKVATAGWSTETAQNR 219 Query: 215 MDAWLSGPNAN--KIEVVIANNDAMAMGAVEALKAHNKSSIPV 255 MDA ++ A+ K++ V+ +ND+ A+G AL A K P+ Sbjct: 220 MDAIIASYYADGTKLDAVLCSNDSTALGVTNALTASYKGEWPI 262 >UniRef50_UPI0001C35F9C putative sugar uptake ABC transporter, solute-binding protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35F9C Length = 318 Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 43/241 (17%) Query: 27 RIGVTIYKYDDNFMSVVR--KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 +IG+ Y +NF S R + A+ A +V+L+ D D K D + + V Sbjct: 66 KIGIN--SYAENFESSQRYLSSFRAAAEKAGNVELVYADCNADPQKLAPNYDAFILQNVD 123 Query: 85 ALAINLVDPAAAGTV----IEKARGQNVPVVF----FNKEPSRKALDSYDKAYYVGTDSK 136 A+ +D + G V +EK +G +P+V F++E S Y +GTD Sbjct: 124 AI----IDASWMGEVGPIAVEKCKGAGIPLVVCDSPFDEEYS----------YLIGTDQY 169 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK-GEPGHPDAEARTTYVIKELNDKGIK 195 ++G+I G +A + N W DG I +++L+ + G P + R + L + GI Sbjct: 170 QAGVIAGKYLADYVKEN--W----DGSIDYLVLEYFQSGGPQVKDRMQGCLDGLKENGIP 223 Query: 196 TEQLQLDTAMWDTAQAKDK------MDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 E+ D W +A+ + D S P+A KI + NND A+G V A++A N Sbjct: 224 VEE---DQVFWFDNEAQTQKTNQITRDFLTSHPDATKI-IFGTNNDPCAIGVVSAVEASN 279 Query: 250 K 250 + Sbjct: 280 R 280 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 148/351 (42%), Gaps = 64/351 (18%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNF-MSVVRKAIEQDAKAAPDVQL 59 + L + V+ +M+ GA +IG + + + +++V + A+ PDV L Sbjct: 8 LRTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDL 67 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ D ND SKQ ++ L+A+G+K L I+ + A V+++A + VV +++ + Sbjct: 68 IVTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNT 127 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG----- 174 +VG ++ G+ G+ +AK LN G I + L+G G Sbjct: 128 PV------TVHVGGENLPLGVGAGEFLAK--------KLNGKGNI--IELQGTAGASATI 171 Query: 175 ------------HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 HPD + + DK +K M D Q GP Sbjct: 172 DRNKGFAEAIAKHPDMKVVASQNCDYTRDKAVKF--------MEDMVQR--------FGP 215 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDA 281 +I+ V A+ND MA+GA++ L+A + + + V G+D A VK G LA T + Sbjct: 216 --GQIQAVYAHNDEMALGAIQVLEAAGRLNEVAVVGIDGQETAFEAVKQGKLAATFVYPF 273 Query: 282 NNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A + A +A G+ + + +P V V DN+A+ K Sbjct: 274 --VAPEGIETAYKVAKGEEVPE---------TITLPTVSVTPDNIADMIGK 313 >UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkholderia graminis C4D1M RepID=B1G9I5_9BURK Length = 358 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 27/285 (9%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA-RGQNVPVVFFNK 115 ++ ++ + D + Q+ Q+D +L++G+KAL I V+ A ++E+ R +P++ +N Sbjct: 78 LRYIIQGANEDVATQDSQVDAMLSQGIKALVIIPVNVDAGKQIVERVKREAKIPIISYNY 137 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 A+D Y+ G D+ G +Q A Q K G +V++ G G Sbjct: 138 VIPSTAVD-----YWAGRDNYFVGELQ---------ARQALQEAKKG--NWVIVSGPEGI 181 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKD----KMDAWLSGPNANKIEVVI 231 A +T ++ L I + ++++ + W A + + +++ L+ N N I+ VI Sbjct: 182 DVARQKTEGALRVLKPH-IDSGEIRIVSHQWHDAWSPEGALKQVEDALTSHN-NNIQAVI 239 Query: 232 ANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 +N D MA+GA+ AL + + + G D PE + +G + + D + D Sbjct: 240 SNEDGMALGALRALAEQKLAGKVWLCGEDCWPEVAREIVAGRINMSAWTDLIQMGRVAAD 299 Query: 291 LAKNLADGKGAADGTNWKIDNKVV---RVPYVGVDKDNLAEFSKK 332 A L G+ + + + + R+ +GV++ L +F K+ Sbjct: 300 AAFALTHGQVPPGNDSITVSGRKIPGMRIGSLGVNRTTLPDFLKR 344 >UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIX2_9ACTN Length = 342 Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 125/267 (46%), Gaps = 31/267 (11%) Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A+ P +++ ++ D KQ Q + A+G+ L ++ VD +AA T++ A+ + VPV Sbjct: 49 AELCPKCEVIYANADQDPVKQQQQAESAFAQGISVLVLDPVDSSAAVTIVAAAQSRKVPV 108 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + ++ + + S + A++V D+++ G +QG + + AA D G I ++ Sbjct: 109 ISYD-----RLIGSPELAFWVSFDNEKVGSLQGKALIERLAA----DGLSSGNI--AMIN 157 Query: 171 GEPGHPDAEARTTYVIKE----LNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG---PN 223 G P D +R + K+ + D T + DT W + DK W++ Sbjct: 158 GSP--TDNNSR---LFKKGAHNVIDGSAFTVVAEFDTPDW----SPDKAQEWMASQVTQF 208 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDAN 282 N + V A NDA A GA+ ALKA + PV G DA A+ + SG T+ D Sbjct: 209 GNSLVGVYAANDATAGGAIAALKAGGVMPLPPVTGQDAELTAIQRIVSGDQYMTIYKDFK 268 Query: 283 NQAKATFDLAKNLADGK---GAADGTN 306 +A+ A L +GK G ++ TN Sbjct: 269 REAEIAATHAVALLNGKTLVGQSEETN 295 >UniRef50_Q0SK74 ABC sugar transporter, periplasmic solute-binding protein n=2 Tax=Rhodococcus RepID=Q0SK74_RHOSR Length = 363 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 127/292 (43%), Gaps = 39/292 (13%) Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 AP+ + + +++ D ++Q Q++ +A+G L + D +G + A +VPVV + Sbjct: 64 APEATVTVRNAEGDPARQQSQVESAIAEGASVLVLISTDARFSGGALTAAAEADVPVVLY 123 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQG----DLIAKHWA-----ANQGWDLNKDGQI 164 + + D V D E G QG DLIA A G +L + G Sbjct: 124 DHDAVGGPAD-----VQVIFDPLEVGRRQGSRAADLIAAMPGDGVKIARVGGNLGEYGTR 178 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM--WDTAQAKDKMDAWLSGP 222 QF+L + E P A++ V+ E TA+ WD A+ + + L+ Sbjct: 179 QFLLGQDEFLQPLADSGKIRVVCE--------------TAIDDWDPAEGQAFAEECLARE 224 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVF-GVDALPEALALVKSGALAGTVLND 280 N N I + + ND + G V AL + IPV G DA AL L+ L T+ + Sbjct: 225 N-NDIALFVTMNDDLGGGIVAALAGRGLAGRIPVTGGQDANLAALQLIAQETLDNTIFKN 283 Query: 281 ANNQAKATFDLAKNLADGKGAADG-TNWKIDNKVVRVPYV-----GVDKDNL 326 ++QAK L ++ G G + N IDN+ + VP V + KDNL Sbjct: 284 LSDQAKVAAQLTTSILHGDGIPEEIVNGTIDNQYMAVPTVFLPVQNITKDNL 335 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 70/287 (24%), Positives = 129/287 (44%), Gaps = 36/287 (12%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 A + +IG+ + ++ F +++ E+ +K +LL+ DSQND +K+ I+ L+ Sbjct: 30 QAREKKIGMVVSTLNNPFFVSLKEGAEKKSKEL-GYELLVLDSQNDPAKERSNIEDLIQG 88 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 G+ L +N D A ++ A N+PV+ +++ + + ++ +D+ I Sbjct: 89 GISVLIVNPTDSDAVINSVQVANKANIPVITVDRQA-----NGGEVVSHIASDN-----I 138 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR----TTYVIKELNDKGIKTE 197 +G +A + ++ L I+ V L+G PG R + K+ N K I ++ Sbjct: 139 KGGELASSFIIDE---LKNKKDIKVVELQGIPGASATRERGKGFHNIIDKKSNLKLISSQ 195 Query: 198 QLQLDTA-----MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS 252 D A M + QA+ DA V A+ND MA+GA +ALK NK Sbjct: 196 AANFDRAQGLSVMENIIQAQSDFDA------------VFAHNDEMALGAAKALKTANK-K 242 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 I V G D +A ++ ++ TV + + A +++G+ Sbjct: 243 IIVVGFDGDEDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQ 289 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 82/312 (26%), Positives = 140/312 (44%), Gaps = 43/312 (13%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +IG T Y++ F SV+ + I + K D QL+ DS KQ +QI L+ + V A+ Sbjct: 45 KIGATYMTYNNTFYSVINEEISRILKEHGD-QLIALDSAMSLKKQKEQIHYLIEQQVDAI 103 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI-IQGDL 145 I VD +++A +PV+ + E + Y + +D+ ++G+ D+ Sbjct: 104 VIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNK----NITYSIVSDNYDAGVQCAKDM 159 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY-VIKELNDKGIKTEQLQLDTA 204 + K AN + + ++ +KG ++ Y V+K + G QL+ A Sbjct: 160 MRKLDHANIVLLQHSTTRSGYLRIKG--FEDTIQSNENYKVVKRMECDG------QLEVA 211 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPE 263 M KM++++ + +VV+ ND AMGA+ AL ++N V+G+D PE Sbjct: 212 M-------PKMESFIE--EGIEFDVVMCLNDPSAMGAMAALSSNNILKDKYVYGIDGTPE 262 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD-----GTNWKIDNKVVRVPY 318 A +V G +A TV Q+ TF GK A + + I NK P Sbjct: 263 AKEMVVEGKMAATVA-----QSPKTF--------GKKAGEVIYKLFSQETIKNKNEMSPV 309 Query: 319 VGVDKDNLAEFS 330 + K+N+ ++S Sbjct: 310 QIITKENVQDYS 321 >UniRef50_B5J4J1 Putative uncharacterized protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J4J1_9RHOB Length = 353 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 68/276 (24%), Positives = 128/276 (46%), Gaps = 21/276 (7%) Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A+ AP++++ + ++ ND S Q Q + L +G K L + +D ++ + + A + VP Sbjct: 56 ARIAPEIKVEVFNANNDTSVQQRQAEQALTQGAKVLIVIPIDGESSAIIADTAAEEGVPT 115 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + ++ + ++S + ++V D + G Q A H N +DG FV+LK Sbjct: 116 IAYD-----RMINSLNTTFWVQADLEGMGYDQ----AMHIINN-----TRDGDT-FVMLK 160 Query: 171 GEPGHPDAEARTTYVIKELN---DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 G P P+A ++ L + G + + T WD A+ MD L+ + N + Sbjct: 161 GSPTDPNAAVIHNGQLRALTPLYESGARVMGYENWTEGWDPTIARRSMDQALTLLD-NGV 219 Query: 228 EVVIANNDAMAMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 + V+++ND A A+ A++ + ++PV G+D +A L+ G + A Sbjct: 220 QGVVSSNDGNAGAAIAAMEEQGMAGTVPVSGLDCTIQAQQLMLLGLQTQCGWRPLEDMAA 279 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKV-VRVPYVGV 321 A ++ L +G+ +D ++N V V YV V Sbjct: 280 AAAQVSVRLVNGEDFSDLAPQTVENGVGATVAYVPV 315 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/281 (26%), Positives = 117/281 (41%), Gaps = 27/281 (9%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA-KAAPDVQLLMNDSQNDQSKQNDQ 74 + G A A+ + V+ F +R+ +E +A K VQ+L D+QN+ SKQ Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVL--DAQNNSSKQISD 85 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 + +G K + + D A + Q V V+ + R +VG D Sbjct: 86 LQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVD----RNIAGGKTAVPHVGAD 141 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG- 193 + G D + K + A + V++ +PG + R V L G Sbjct: 142 NVAGGRAMADWVVKTYPAGA----------RVVVITNDPGSSSSIERVKGVHDGLAAGGP 191 Query: 194 ---IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH-- 248 I TEQ TA QA L+ +V++ ND MAMGA+EA++A Sbjct: 192 AFKIVTEQ----TANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGL 247 Query: 249 NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 + + + V G DA+PEALA +K+G + TV + Q + Sbjct: 248 DSAKVKVIGFDAIPEALARIKAGEMVATVEQNPGLQIRTAL 288 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 13/181 (7%) Query: 99 VIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDL 158 +IEKA Q + V+ + +D+ +V D+ E G I G+ + + + Sbjct: 157 IIEKATQQGIKVIVIDT-----PIDTDQILTFVTFDNFEGGQILGEWVIQKLTQSS---- 207 Query: 159 NKDGQIQFVLLKGEPGHPDAEARTTYVIKELN--DKGIKTEQLQLDTAMWDTAQAKDKMD 216 ++ +I ++L+G + R ++ L +K E L L +A W+T +AK Sbjct: 208 RRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKSADWETKKAKMITQ 267 Query: 217 AWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT 276 AWL I+V++A +D MA+GA EA++ NKS I + G D P L +K+G + T Sbjct: 268 AWLE--KFPTIDVIMAADDQMAVGASEAVQEANKSGIIITGFDGTPYGLNAIKTGQIDAT 325 Query: 277 V 277 + Sbjct: 326 I 326 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/246 (25%), Positives = 113/246 (45%), Gaps = 21/246 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 +A RIG + D + + ++++ P+ LL D++N ++Q QI L Sbjct: 43 SATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQISQIQAL 102 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + +G+ L ++ + A VIE + +PV+ ++ + +SY+ Y+G D+ E Sbjct: 103 IDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDR---KIETESYNA--YIGGDNVEI 157 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND-KGIKTE 197 G + G I H L G+I V + G P A+ R +++EL GI+ Sbjct: 158 GRLAGVFIGNH--------LKGKGRI--VEIWGLPSSSPAQERHRGLLEELRKYPGIQVV 207 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVF 256 + +L+ W+ + A L+ +++V A+ND MA+GA K + + Sbjct: 208 K-ELN-GQWERDTVGRVVAAELN--TLKDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFV 263 Query: 257 GVDALP 262 G+DALP Sbjct: 264 GIDALP 269 >UniRef50_D1C9K0 ABC-type xylose transport system periplasmic component-like protein n=3 Tax=Bacteria RepID=D1C9K0_SPHTD Length = 434 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 134/286 (46%), Gaps = 24/286 (8%) Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 P+ Q++ N++ D + Q Q + L G + L ++ VD AAA + E+A+ Q VPV+ + Sbjct: 134 CPNCQIIYNNANQDAATQQQQAEAALTNGAQVLVLDPVDSAAAAAIAEQAQAQGVPVIAY 193 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 + R L+S +YY+ D+ E G +Q + A +G D D QI V++ G P Sbjct: 194 D----RAILNSEGVSYYISFDNVEVGRLQAQTLVD---ALEGVD---DPQI--VMINGSP 241 Query: 174 GHPDA---EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 230 +A + V L D G T ++ DT W QA+++M L+ N+++ V Sbjct: 242 TDNNAGEFKEGAHSVFDPLVDAGELTIAMEYDTPDWSPDQAQNEMQQALTA-LGNQVDGV 300 Query: 231 IANNDAMAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 A ND A GA+ A+KA S + PV G DA + + G TV +A+ Sbjct: 301 YAANDGTASGAIAAMKAAGISPLPPVTGQDAELAGIQRILIGEQYMTVYKAIQPEAEIAA 360 Query: 290 DLAKNLADGK-------GAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 +LA L G+ G N D + + V V +DN+A+ Sbjct: 361 ELAFALLTGQDVPESVTGGQTANNGATDVPAILLTPVAVTQDNIAD 406 >UniRef50_C1RM32 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Micrococcineae RepID=C1RM32_9CELL Length = 364 Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 21/251 (8%) Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE-PS 118 L+ + N ++Q QI+ ++ +G + + + VD G+V+E+A + + V+ +++ + Sbjct: 78 LVQAADNKVTQQQQQIEAMIERGAEVIVVGPVDGTQLGSVLERAAAEGIAVIGYDRLIEN 137 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 A+D+ V S +G +QG + AA +G + L G P P+A Sbjct: 138 TPAVDA-----VVQFGSLRTGELQGQSLLDGLAARKG-----EPPYHVELFGGGPADPNA 187 Query: 179 ----EARTTYVIKELNDKGI-----KTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIE 228 E + + +++D + +TE Q T WD A+A+ +MD+ LSG +A +I+ Sbjct: 188 PAFFEGAMSVLQPKIDDGTLVVGSGQTEFTQAATPDWDNAKAQARMDSLLSGFYSAEEID 247 Query: 229 VVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 V++ ND +A + + + + + V G+DA E++ V G TV T Sbjct: 248 GVLSPNDGIARAVMTSAQQAGQETPVVTGLDAENESVVSVWQGQQWSTVAKPTVELVGRT 307 Query: 289 FDLAKNLADGK 299 +L ++L G+ Sbjct: 308 VELIQSLQQGE 318 >UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG1_9FIRM Length = 398 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 37/288 (12%) Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 S ND ++Q I ++A GV L + +D A TV+ +A +PV+ +++ Sbjct: 92 SDNDTNRQVSDIQNMIADGVDLLVVAAIDGEALNTVMNEAGEAGIPVIAYDRLIMND--- 148 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDL-NKDGQIQFVLLKGEPGHPDAEART 182 + +YYV D+ G +QG I DL N G + G+P A+ Sbjct: 149 --NASYYVSFDNYTVGTLQGQYIVDTL------DLDNAAGPFNMEITAGDP----ADNNA 196 Query: 183 TY-------VIKELNDKG---IKTEQLQLDT---AMWDTAQAKDKMDAWLSGPNAN--KI 227 TY V++ D G + + Q DT A WD+ A ++ L+ A+ ++ Sbjct: 197 TYFYQGAMDVLQPYIDSGKLVVVSGQTDFDTVATAQWDSQTAMERAQNVLASYYADGTQV 256 Query: 228 EVVIANNDAMAMGAVEALKA-HNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQA 285 +V + +ND+ A+G +A+++ + S+ P+ G D L + G + TV +N+A Sbjct: 257 DVWLCSNDSTALGVSQAIQSDYAGSNQPIITGQDGDEANLKNIVDGLQSMTVYKAVSNEA 316 Query: 286 KATFDLAKNLADG----KGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 T DL K + +G + + W D Y D +N F Sbjct: 317 VVTLDLGKAILNGDTIDESLITNSGWDFDCSYDTESYFTSDGNNCPSF 364 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 110/255 (43%), Gaps = 34/255 (13%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++L D+Q KQ ++ L+ +GVK L IN D + A V VV + Sbjct: 67 EVLATDAQGKLQKQISDVEDLVTRGVKLLIINPADSEGLVNAVNNASANGVKVVVIDSTL 126 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + +A +V T + S I G L+ HW + + ++ LL GE G+P Sbjct: 127 N-------PRANFV-TQVQSSNSINGALVG-HWVIEE----VGNKSLKIALLSGEKGNPV 173 Query: 178 AEARTTYVIKELNDKGIKTEQLQ----LDTAM-------WDTAQAKDKMDAWLSGPNANK 226 + R V+ GI QL+ D + W+ M+ L ANK Sbjct: 174 GQERRLGVL-----SGIIEAQLRKFGKADLTVVGQGWGHWNDEGGLKAMEDLLV---ANK 225 Query: 227 -IEVVIANNDAMAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQ 284 I +V+ ND+M +GA A+++ ++ I V DA EALAL+K G T LND Sbjct: 226 DINMVLGENDSMVLGARRAIESAGRTGILLVAAADAQKEALALIKQGKYGVTGLNDPALV 285 Query: 285 AKATFDLAKNLADGK 299 A+ DL + G+ Sbjct: 286 ARTAIDLGVKVVKGE 300 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/274 (25%), Positives = 120/274 (43%), Gaps = 48/274 (17%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 I + +D+ F E AK LLM +D +KQ++ ID + +G KA+ Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMT-HDDDANKQSEMIDTAIGRGAKAII 88 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 ++ A+ ++KA+ +P ++E + +G+ +++ Sbjct: 89 LDNAGADASVAAVKKAKDAGIPSFLIDREIN------------------ATGVAVAQIVS 130 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN-DKGIKTE--------- 197 ++ QG L G +FV L GE G+ V KE + + GI+++ Sbjct: 131 NNY---QGAQL---GAQEFVKLMGEKGN-----YVELVGKESDTNAGIRSQGYHDVIDDY 179 Query: 198 ----QLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANNDAMAMGAVEALKAHNKSS 252 + +A W +A KM+ L + P+ I+ VI+ ND MAMGA+ AL+A + Sbjct: 180 PDLKSVAKQSANWSQTEAYSKMETILQANPD---IKGVISGNDTMAMGAIAALQAAGRKD 236 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 + V G D + +KSG + TVL A QA+ Sbjct: 237 VIVVGFDGSNDVRDSIKSGGIKATVLQPAYAQAQ 270 >UniRef50_C6XUV0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XUV0_PEDHD Length = 343 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 70/296 (23%), Positives = 124/296 (41%), Gaps = 39/296 (13%) Query: 42 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE 101 VV++++++ +Q D Q D +KQ I+ LL+KG++ L +N +DP A V+ Sbjct: 72 VVKRSVQRYG-----MQYYTADGQEDVAKQVAAIEDLLSKGIQVLVLNPLDPKAVVPVVN 126 Query: 102 KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +A + V V + KA AY + + + G+L+ W A K+ Sbjct: 127 RAIAEGVVVFIVDSMIDEKA------AYTSSVVANNT--LNGELLG-LWLAE-----TKN 172 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ-------LQLDTAMWDTAQAKDK 214 ++ ++ G G+P + ++ L D ++ Q + K Sbjct: 173 EALKIAIISGNQGNPVGREKRLGFVRGLADGQLRQNAKTNFDIVAQGWGGWNNNGGLKAM 232 Query: 215 MDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGAL 273 D + P N V++A NDAMA+GA + +K K + I + G D EA ++K+G Sbjct: 233 EDILAAHPYVN---VLLAENDAMALGAYKIIKQMGKENQITILGFDGQKEAFDMLKTGKF 289 Query: 274 AGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 T N + +L +G+ NK+ P V + K N+ E+ Sbjct: 290 EATAQNSPKILGETIIELVARHLNGEKV---------NKLNYTPSVLISKKNVDEY 336 >UniRef50_C4L3Z3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L3Z3_EXISA Length = 312 Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/239 (21%), Positives = 108/239 (45%), Gaps = 14/239 (5%) Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 S++ + + +++D L+ +GV+A+ + +D +E+A+ +N+P++ + + +D Sbjct: 72 SEDSRVLEKEKLDSLIDRGVEAIFLTTLDDTFIQPSLERAKRKNIPIIAID-----RMID 126 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 V +D+ + G + + IA + D I+ V ++G P R+ Sbjct: 127 HPSVLTSVVSDNVDIGRMAAEQIAAKYN-------ELDRPIRVVEVRGTPKVRSTMDRSL 179 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + + G + + T +DT QA+ +M WL + V ++ND G V Sbjct: 180 GIREYEKQHGDDFQIIASITGNYDTFQAEIEMSRWLE--EEIPFDAVFSHNDDNTFGVVR 237 Query: 244 ALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL++H + + VD + + L+++G + TV+ N + F + +GK A Sbjct: 238 ALESHGLTDKTIVSVDGISDIYPLIQNGKVNATVVQSPNEMMEVGFKALEQHLNGKKIA 296 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/240 (27%), Positives = 107/240 (44%), Gaps = 27/240 (11%) Query: 43 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 102 +RKA E+ P + D+ D SKQ ++ + K V L I+ + A V++K Sbjct: 70 IRKAAEK----VPQFDVQFADAAKDNSKQVSDVENFMTKKVDLLMISPNEAAPLTDVVKK 125 Query: 103 ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDG 162 A + +PVV +++ +A + Y+G D+ + G G+ L + G Sbjct: 126 AYNEGIPVVVLDRKVEGEAFTT-----YIGADNVQIGRQAGEYFKNTL-------LPQGG 173 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG- 221 +I V LKG G A R ++ + G K E + W+ + + KMDA L Sbjct: 174 KI--VQLKGLSGSTPAAEREKGFMEGI--AGSKIEVVDTADGEWERSVGQQKMDALLKAH 229 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP---EALALVKSGALAGTVL 278 P+ I+ V A ND MA GA A +A + + G+D LP + V+ G L+ T L Sbjct: 230 PD---IQAVYAQNDPMAEGAWLAAQAAGRKDLKFVGIDGLPIESGGIKAVEQGRLSATNL 286 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 71/313 (22%), Positives = 125/313 (39%), Gaps = 50/313 (15%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 + G ++ F +++AIE+ D +L++ D+QND KQ ++ LL +G+ L Sbjct: 69 KFGFAATTMNNPFFHAIQEAIEEVVDENGD-ELIVIDAQNDAQKQISMVEDLLTQGIDLL 127 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD----------KAYYVGTDSK 136 + +D A+ + +E+ VPVV F+ D YD YY G Sbjct: 128 FLCPIDSASIKSSLEQCGKAGVPVVNFDT-------DVYDVDLVNTIIVSDNYYAGE--- 177 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ++ D++ K ++ L +K + G D ++ E++ KG Sbjct: 178 ---LVAEDMMKKLPEGSKVCILTSPSA--EACIKRQNGFKDKADGYFKIVSEIDGKGDTA 232 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 L + D Q + A+ A ND A+G V+AL++ K+ + V+ Sbjct: 233 TSLGI---AEDVLQGNPDLGAFY------------AINDPSAIGCVQALESQKKTDVLVY 277 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVD P + G + T N K + A + G+ K + V Sbjct: 278 GVDGQPMGKQAISEGTMEATAAQSPINIGKESVAAAYKILSGESV---------EKNILV 328 Query: 317 PYVGVDKDNLAEF 329 P +DK+N+ E+ Sbjct: 329 PTFLIDKNNVTEY 341 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 56/201 (27%), Positives = 88/201 (43%), Gaps = 20/201 (9%) Query: 64 SQNDQSK-QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 S ND + Q QI+ + +GV L ++ +VI+KA +PV+ F+++ Sbjct: 63 SANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKT----- 117 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 DS ++G D+ E+G G+ I + DG+ + G A R Sbjct: 118 DSKKYTAFIGADNYEAGYEIGNFIGQQL----------DGKGNIAEICGLQASSPAIERN 167 Query: 183 TYVIKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + L D GIK + W MD+ LS I+ V A ND MA+GA Sbjct: 168 RGFMDALKDYSGIKV--IARKHGDWVKESGVMAMDSVLSQAK-EPIQYVFAQNDRMALGA 224 Query: 242 VEALKAHNKSSIPVFGVDALP 262 ++++K H I + G+DALP Sbjct: 225 LQSIKKHKVKGIRIVGIDALP 245 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/299 (22%), Positives = 130/299 (43%), Gaps = 15/299 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYD-DNFMSVVRKAIEQDAKAAPDVQL 59 M KK L ++ + S+ F + A D IGVT D++ + A++ P+V+ Sbjct: 1 MQKK-LAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ D+ + ++Q Q+ L+ + V A+ + + A ++ KA+ +PV+ N S Sbjct: 60 IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISE 119 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 K + ++ S + I QG A+ LN GQ+ V + G+PG+ A Sbjct: 120 KGQE------FITAFSGPNTITQGQYAAELMCEG----LNGKGQV--VQITGQPGYQTAI 167 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R L + W+ +++ M+ +++ KI+ V A +D M + Sbjct: 168 NRQKGFEDSLAADCPGVSIIDSQPGDWNREKSQRVMENFIT-RFGTKIDGVYAADDNMGI 226 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 GA+ A+K + +I + G +K G+ G+V+ + A A + + +G Sbjct: 227 GALNAIKEADLKNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNG 285 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 114/258 (44%), Gaps = 27/258 (10%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAK----AAPDVQLLMNDS--QNDQSKQNDQIDVLLA 80 ++G + + F + EQ K A DV + ++ + ++D+ Q D L+ Sbjct: 74 KMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLVN 133 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +G AL ++ + + ++ A+G+ +P + N + S D Y+VG D+ ++G Sbjct: 134 QGYNALMLSPISDSNLTASVDNAKGKKIPTINVND----GLIASAD--YFVGPDAYQNG- 186 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 +A W + Q L G + V+ G A RT + D + Sbjct: 187 ----ELAAEWVSKQ---LGDKGDVAIVI--GMAKAFAARERTAGFKGWIKDNNSGLNVVA 237 Query: 201 LDTAMWDTAQAKDKMDAWLS-GPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVD 259 A WD +AK+ W+ P+ ++ + NND MA+G VEA++ K I V GVD Sbjct: 238 EQNADWDRQKAKELASTWIQQNPD---LKAIFCNNDDMALGVVEAVE-EAKKDILVVGVD 293 Query: 260 ALPEALALVKSGALAGTV 277 + EA +++G L TV Sbjct: 294 GIGEAYDSIRAGKLDATV 311 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 117/268 (43%), Gaps = 27/268 (10%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A A RIG + + + + K I +A PDV+L++ D ++ KQ ++ L Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + V AL ++ + A V+++A +PV ++ D Y + +VG D+K Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVE---TDQYTQ--FVGGDNKLI 142 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK------GEPGHPDAEARTTYVIKELNDK 192 G G+ + L G+ Q +++ +P H + + KE Sbjct: 143 GRAAGEYAVEL--------LGGKGKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKE---P 191 Query: 193 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK-AHNKS 251 GIK L + W QA + M L N KI++V +ND MA GA A K A + Sbjct: 192 GIKN-LLDKQSGDWKQDQAYNIMATALR--NNEKIDLVYGHNDPMAYGAYLAAKDAGREK 248 Query: 252 SIPVFGVDALP-EALALVKSGALAGTVL 278 I G+DALP E + V +G L T L Sbjct: 249 EIKFIGIDALPNEGVTWVSNGELTATFL 276 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 61/216 (28%), Positives = 100/216 (46%), Gaps = 14/216 (6%) Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 +E+ A PDV+L+++D+Q D SKQ Q++ + + L + + AA V+ +A Sbjct: 50 MEKLFAAQPDVKLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEA 109 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PV+ ++ + S Y+ +D+ G + G I H G G + Sbjct: 110 KIPVICLERDILQPNYTS-----YIHSDNVAIGRLAGQFIVGHLTKKYG---KPAGNV-- 159 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 V ++G G + E KE+ DK + + + A W A+AKD+M L K Sbjct: 160 VAMRGLLGV-EGEINRDRGAKEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRA--QPK 216 Query: 227 IEVVIANNDAMAMGAVEALKAHNKSSIPVF-GVDAL 261 I+VV +ND MA+GA K + +F GVD L Sbjct: 217 IDVVYGHNDPMAIGAYLGAKELGREKEMIFVGVDGL 252 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 57/253 (22%), Positives = 112/253 (44%), Gaps = 17/253 (6%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 RIGV + + + +++ + AK V+++ ++ D Q + ++ ++AK Sbjct: 51 RIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKKYDG 110 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY--YVGTDSKESGIIQG 143 + + +DP I KA + +PVV E SR L ++ K+ G + Sbjct: 111 IIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGRLCA 170 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 + +A+ + + +++G PG ++AR + G+K + ++ Sbjct: 171 EDMAEKLPSGS----------EVAIIEGIPGAGQSKARREGASEGFEKAGLKL--VAVEA 218 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 WD +A D + +++ + ND MA+ AV+AL+ + V+G D +PE Sbjct: 219 GNWDRNRAYDITTNLVKA--HPQLKGIYCANDVMALAAVDALEVAGIEGVTVYGTDFIPE 276 Query: 264 ALALVKSGALAGT 276 A +KSG LAG+ Sbjct: 277 AAEAIKSGRLAGS 289 >UniRef50_D2PTU2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PTU2_9ACTO Length = 361 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 72/268 (26%), Positives = 124/268 (46%), Gaps = 20/268 (7%) Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGT--VIEKA-RGQNVPVVFFNKEPSRKALD 123 D +KQ +QI +LA K L +N++ + T +++ A R V +NK K D Sbjct: 85 DSTKQQEQISQVLAGDTKCLVMNVLPNGDSDTTPIVKGADRAGAYLVTQWNKPAELKPTD 144 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 ++ + ESG GD +A+ + G + L+G A+ R Sbjct: 145 YGKWLSHITYNGVESGQQIGDALAQAIGGSGG----------IIALQGVLDTAAAKDRFA 194 Query: 184 YVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + L + G+K L A + A+A L+ AN ++ + A ND MA+GA+ Sbjct: 195 GLQASLKKNTGVKL--LDQQAANFSRAEALAVTKTLLTKHGAN-VKGIWAANDDMALGAL 251 Query: 243 EALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 EAL+ ++ + V G+DA+P+A+ VK+G + TV +D Q + +A GK + Sbjct: 252 EALQQAGRAGKVAVVGIDAVPDAVTAVKNGTMTATVSSDGGWQGGIGLAIGYCVATGKLS 311 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 D + ++N+ + KDN+A+F Sbjct: 312 VD--DIAVENRAFFAEQFLITKDNVADF 337 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/246 (28%), Positives = 113/246 (45%), Gaps = 21/246 (8%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V+++ D+ D +K ++ LL+K V A+ I+ +A V+ + P + +++ Sbjct: 177 VEVVSTDAGGDAAKLASNVEDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRK 236 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG-H 175 S A ++G D++ G G+ +A L KD + L+KG P + Sbjct: 237 -----FRSGTYASWIGPDNEAIGRQDGEFLAAK--------LGKDATV--ALIKGGPADN 281 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 ARTT V K L+ GI+ + D W + M++ L+ + ++ V ND Sbjct: 282 SIGLARTTGVKKALDAAGIRMVE-GPDYGNWASDGGLTVMESLLA--SHKDLDAVFCEND 338 Query: 236 AMAMGAVEALK-AHNKSSIPVFGVDALPEAL-ALVKSGALAGTVLNDANNQAKATFDLAK 293 AM +GA A+K A + I + GVD EAL A+ G T LNDA+ D A Sbjct: 339 AMCLGAQRAVKDAGREKEIVLAGVDGQAEALQAIAAGGNYLVTGLNDADQIGSLGLDRAV 398 Query: 294 NLADGK 299 ++ DGK Sbjct: 399 DILDGK 404 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/268 (25%), Positives = 124/268 (46%), Gaps = 32/268 (11%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L+ D+Q Q Q + +++ V +AI V TV+ +A+ ++PV+ ++ Sbjct: 82 KLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGWETVLGEAKDADIPVIIVDR-- 139 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 K D + +VG+D ++ G+ A W N + K + V+L+G G Sbjct: 140 MIKVSDDSLFSCWVGSDFQKEGVN-----AAEWLVNYMKEKGKTDKQNVVVLQGTIGSSA 194 Query: 178 AEARTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 RT IK+ ++ I +Q T + A+ ++ M+++L N I+VVIA N Sbjct: 195 EIGRTKGFGDTIKKYDNFNILAQQ----TGEFTQAKGQEVMESFLK--QYNDIDVVIAQN 248 Query: 235 DAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 D MA GA++ALKA K+ + + DA+ A + +G + +V + + + +L Sbjct: 249 DNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDMNVSVECNPLHGPRVA-EL 307 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYV 319 AK L + D KV ++ YV Sbjct: 308 AKKLMN------------DEKVEKIQYV 323 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 83/293 (28%), Positives = 125/293 (42%), Gaps = 32/293 (10%) Query: 16 LFGAAAHAADT---RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQN 72 L G AA D RIGV DD++ + I ++A V + + + +D KQ Sbjct: 17 LLGLAACRQDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVEIRSAADDNRKQA 75 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL-DSYDKAYYV 131 + + + KGV L I+ + A ++E+A + +PV+ + RK L D Y Y+ Sbjct: 76 EDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVD----RKILSDKYTA--YI 129 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH-PDAEARTTYVIKELN 190 G D+ E G G+ IA G+ V L G G P E ++ N Sbjct: 130 GADNYEIGRAVGNYIASSLK----------GKGNVVELTGLGGSTPAMERHQGFMAAISN 179 Query: 191 DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 250 IK + A W+ A+ +MD+ L KI+ V A+ND +A GA +A K + Sbjct: 180 YPDIKL--IDKADAAWEREPAEVEMDSMLR--RHPKIDAVYAHNDRIAPGAYQAAKKAGR 235 Query: 251 SSIPVF-GVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 +F G+DALP L LV L T + N LA N+ + K Sbjct: 236 EKEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILEKK 286 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 73/317 (23%), Positives = 134/317 (42%), Gaps = 45/317 (14%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +IG ++Y + + + A+ A +++++ D ++ Q +Q L+ +G+ AL Sbjct: 41 KIGYSVYDLQNPYWQSYAAGVRAGAEEA-GIEVVIADQKSSQQEQVSGSLDLINQGISAL 99 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII----- 141 I V P+A + I+ A G+ +PVV + +GT+ G I Sbjct: 100 IITPVQPSALPSTIDAAHGEKIPVVVAD----------------IGTEGDYDGYILSNNY 143 Query: 142 -QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 G L A+H G G Q +++ G E R + + L ++ E + Sbjct: 144 EGGRLAAEHVVEKLG---GTPGPHQVGVIELHAGSVVGEERVSGFVDRLGEE----ENFE 196 Query: 201 LDTAMWDTAQAKDKMDAWLSGP----NAN-KIEVVIANNDAMAMGAVEALKAHNKS---S 252 + +++ D +D + +AN +++V+ A ND A+GA A++ S Sbjct: 197 IVSSL----DGNDTVDGGFTAAQDMLSANPELDVIYAANDDSAVGASRAMETAGVSVANG 252 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 + G D AL L++ G ++GTV D Q + + A L +G+ D K Sbjct: 253 FTLIGFDGSDPALDLIEQGVMSGTVAQDPFGQGQKAVETALALLNGE---DPGYSDEATK 309 Query: 313 VVRVPYVGVDKDNLAEF 329 + P V +N+AEF Sbjct: 310 TIYFPVEMVTAENVAEF 326 >UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate binding protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RYT8_RHOSR Length = 340 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 74/300 (24%), Positives = 132/300 (44%), Gaps = 30/300 (10%) Query: 33 YKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 92 ++Y N++S +RKA E+ V + +S D S Q Q+ + +AK V + I Sbjct: 54 HEYGRNYVSSLRKAAEEH-----HVNAFVMNSNYDASVQASQMKIAIAKKVDGIVIWPAL 108 Query: 93 PAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA 152 A ++ +A+ +PV N +P LD+ + G + + G +QG +AK Sbjct: 109 YGAEQPMLIQAQRAGIPVDISNSQPPED-LDTSLYHAFTGPNDQRIGELQGKELAKL--- 164 Query: 153 NQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQA 211 L G +V + G PG+ A R + +E+ N +K L +D QA Sbjct: 165 -----LGSKG--TYVYIGGTPGNAAAINRQIGLEREMANHPDVKL--LGSQPGNFDKNQA 215 Query: 212 KDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKS 270 + A +S N+I+ ++ +D +A GA +AL A + + + G + P A +L+++ Sbjct: 216 QTAASALISR-FGNQIDALVTPDDIIASGAAQALDAAGMAGQVKLLGHNYAPVARSLLEN 274 Query: 271 GALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G+++ T+ + ++ GK V +P V KDNL EF+ Sbjct: 275 GSMSTTLFQSPCWDSTHALTTMMDVLAGKDVP---------PVSYMPLPVVTKDNLDEFT 325 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 75/284 (26%), Positives = 131/284 (46%), Gaps = 29/284 (10%) Query: 3 KKVLTLSAVMASMLFGAAAHAAD-TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 K + SA+++++ A A AAD +I + + + + +R+ E+ AK ++ L++ Sbjct: 7 KNIFKFSALISAL--PALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKE-KNIDLIV 63 Query: 62 NDSQNDQSKQN--DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ + S + ++ ++AK V A+ + D A +KA +P++ + Sbjct: 64 QVAEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDA 123 Query: 120 KALDSYDKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 KA ++ + YVG D+ G ++ A N + K G + +L+G PG + Sbjct: 124 KAAEAAGLKFNYVGVDNFNGGYLE--------AKNLAEAIGKKGNV--AILEGIPGVDNG 173 Query: 179 EARTTYVIK---ELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANN 234 E R +K E D I Q +A W+T QA L+ PN N I A N Sbjct: 174 EQRKGGALKAFAEYPDIKIVASQ----SANWETEQALTVTTNILTANPNINGI---FAAN 226 Query: 235 DAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTV 277 D MA+GAV A++ A + V G D +P A+ VK G + T+ Sbjct: 227 DNMAIGAVTAVENAGLAGKVLVSGYDGIPLAIEYVKQGKMQNTI 270 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 134/288 (46%), Gaps = 27/288 (9%) Query: 3 KKVLTLSAVMASMLFGAAAH---AADTR---------IGVTIYKYDDNFMSVVRKAIEQD 50 +KV+ + AV+A +L G A A DTR +GV+ + + + +++++ Sbjct: 9 RKVIIVLAVLA-LLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKET 67 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 L+ +++ Q Q + +++ V + + + TV+ +AR +PV Sbjct: 68 LTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPV 127 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + +++ + K Y +VG+D E G G + + +G N D Q+ V+L+ Sbjct: 128 ILMDRKINVKDESLY--TAWVGSDFVEEGRNAGKWLEDYL---KGQRFNDD-QVNIVVLQ 181 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 230 G G RT +E+ K L+ A + TA+ +++M L+ +I+V+ Sbjct: 182 GTAGTTAMFGRTQG-FEEIAAKHENWNILEQTNADFTTAKGEEEMRRLLN--TYPEIDVL 238 Query: 231 IANNDAMAMGAVEALKAHNKSS-----IPVFGVDALPEALALVKSGAL 273 ++ ND M GA+EA+++ +++ I V D +AL VK+GA+ Sbjct: 239 VSQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAI 286 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/293 (24%), Positives = 121/293 (41%), Gaps = 34/293 (11%) Query: 16 LFGAAAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQN 72 +F +TR G T ++ F +V I + D Q++ D DQ KQN Sbjct: 32 VFSNYLEQHNTRKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGD-QMITLDPALDQKKQN 90 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 +QI L+ + V A+ +N VD A + A+ +PV+ + + R L A + Sbjct: 91 EQIKQLVKRKVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDL----VAMTIV 146 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK 192 +D+ ++G+ L AK + + Q VLL + ++ N+K Sbjct: 147 SDNYKAGV----LCAKEM-------MKQKDQANIVLLTHNAARSAVDRINGFLDTIKNNK 195 Query: 193 GIKT-----EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA 247 K Q Q++ A+ K+D + I+VV+ ND AMGA+ AL + Sbjct: 196 NYKILASADTQGQIERAL-------PKVDKIIE--EYQNIDVVMGLNDPAAMGALAALDS 246 Query: 248 HN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 + + V+G+D PE L+K G + GT A + A + G+ Sbjct: 247 KGAREGVLVYGIDGSPEGKKLIKEGMMTGTAAQSPKQMADTAVNAAYQILQGE 299 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 13/173 (7%) Query: 159 NKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW 218 N+ G + ++G+PG A RT + + G + + A W QA D Sbjct: 174 NRPGGGKVAAIEGQPGVFAAGQRTDGFTTTITEAG-NFQVVASVPANWSREQAYDAASTI 232 Query: 219 LSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTV 277 L + ANND MA+G VEA+KA N + + VFG D +P+A A +++G L GTV Sbjct: 233 LQ--QHPDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPDAYASIRAGDLTGTV 290 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + + ++ L G+G +VV P + DN+A++S Sbjct: 291 DSFPVLTGEVAMEVVLRLLAGQGIP---------RVVATPQALITADNVADYS 334 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 72/276 (26%), Positives = 120/276 (43%), Gaps = 20/276 (7%) Query: 7 TLSAVMASMLFGAAAHA----ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 TL+ +++ F A A A I V+ Y +++ +E +AK +V+++ + Sbjct: 10 TLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKIIRS 69 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D Q KQ I+ + +GV + I D A V+ A + + VV + R Sbjct: 70 DGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTID----RPVN 125 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 + V D+ QG+ + K + QG + + L+G PG A R+ Sbjct: 126 GVPEVIANVAADNLIGAQRQGEAVEKLFP--QGATI--------INLQGIPGDKTANDRS 175 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 V L+ + + TA ++ Q + L+G AN V++A ND A+GA Sbjct: 176 KGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTG-LANPPTVIVAGNDDSALGAA 234 Query: 243 EALKAHN-KSSIPVFGVDALPEALALVKSGALAGTV 277 +A++A K I +FG D +AL V+ G L GTV Sbjct: 235 QAVEARGLKGKIAIFGYDGSTDALKAVRDGVLTGTV 270 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 78/285 (27%), Positives = 125/285 (43%), Gaps = 42/285 (14%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L++ + D + Q Q+ L+ KGV A+ +N D +++A + + V+ ++E Sbjct: 86 ELVIESADTDVAGQIQQLQNLINKGVDAILVNPSDVNGLNDTLQEAINKGIIVISVDQEL 145 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + Y VG D KE I+ W A + GQ VL++G PGHP Sbjct: 146 NTPGV------YNVGIDQKEWA-----KISARWLAEK-----LGGQGNIVLIEGFPGHPA 189 Query: 178 AEARTTYVIKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANND 235 AR V + L + IK L +T WD A + M +L S PN + D Sbjct: 190 NVARMEGVEEVLKEYPNIKV--LGRETGKWDEATGQQVMSNFLASFPNLDGY----WTQD 243 Query: 236 AMAMGAVEALKAHNKSSIPVFGVDALPEALAL----VKSGALAGTV-LNDANNQAKATFD 290 MA+GA++A+ A N S PV + + L L +K T+ + + + Sbjct: 244 GMAIGAMQAVMAANPSKWPVLVGEGRCQFLQLWDQRLKEDPNFETIAVANPPGVSPTGLR 303 Query: 291 LAKNLADGK-------GAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 +A N+ GK G A+G ++ V+ VP + V KDN E Sbjct: 304 IAINMLQGKQVDKSKLGGANGLSF-----VIPVPVI-VTKDNFQE 342 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/302 (26%), Positives = 138/302 (45%), Gaps = 34/302 (11%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 K++L + + L + A A D + I N I ++ + ++ Sbjct: 6 KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVS 65 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA-GTV--IEKARGQNVPVVFFNKEPSR 119 + D + ++ QID + +A+ ++DPA A G++ + KA +PV N E ++ Sbjct: 66 SHKGDTNTESRQIDTAITNQAEAI---ILDPANADGSIGAVRKAVEAGIPVFIINAEINQ 122 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + L +A V +++ + L A+ W + G ++V LKG P +A Sbjct: 123 QGLA---EAQLVSNNAQGAA-----LGAQQWIKSVG------DSARYVELKGAPSDNNAA 168 Query: 180 ARTTYVIKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANNDAM 237 R+ L+ G+ E++ D A WD Q +K + L + P+ I+ VI+ ND M Sbjct: 169 TRSNGYETVLSQYPGL--EKVGSDVANWDRTQGFNKTQSMLQANPD---IDGVISGNDEM 223 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF-DLAKNL 295 A+GA+ ALK K + V G D P+A+ VK+G + TVL Q A F ++A + Sbjct: 224 ALGAISALKEAGKLDDVVVGGFDGSPDAVEAVKAGEMDYTVL-----QPVAIFSEMAVRM 278 Query: 296 AD 297 AD Sbjct: 279 AD 280 >UniRef50_C8VY22 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VY22_DESAS Length = 436 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 19/273 (6%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +IGV + + + +++K + + A+ + D+ ND KQ +QI+ L+ K VKA+ Sbjct: 29 KIGVCLADMERDGNRIIKKIMTERAQK-EGISFTWQDAGNDAEKQQEQINELVKKKVKAV 87 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + VDP+A + + + V P+ LD+ YV +D G +Q Sbjct: 88 ILQAVDPSAGPAIARTLTEKGIKTVALETLPANTPLDA-----YVASDHGRVGELQA--- 139 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK-TEQLQLDTAM 205 +A Q K ++ ++L+G+P D AR E KG K L++ + + Sbjct: 140 --RYALEQSAAGGKTEGLRILVLQGDP--SDLAAREITAANEAVLKGDKRVADLKVQSNL 195 Query: 206 W-DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPE 263 D A+ ++ L+ A K++ V+AN+ +AM AV+ L N + + GV A + Sbjct: 196 RADPGLARVAVENTLA---AGKLDAVLANDSRLAMAAVQVLTERNLAAQVVTVGVGADSK 252 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 ++ + SG V N A+ D A LA Sbjct: 253 SVRGIASGQHDAEVDNSPELLAQYITDAAVELA 285 >UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZZ2_ACICJ Length = 369 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/278 (25%), Positives = 118/278 (42%), Gaps = 21/278 (7%) Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 I+ A P+ +L+++++ + Q +Q + ++ G L ++ VD A ++ A Sbjct: 65 IKMAHAADPNAKLIVSNANSSPDTQLNQAESAISNGADVLVVDPVDGKAGAAIVNYAARN 124 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +V V+ +++ D YYV D+ + G +QG+ IAKH K G Sbjct: 125 HVKVISYDRLIQDSKPD-----YYVSFDNTKVGELQGEYIAKH---------TKPGG-SV 169 Query: 167 VLLKGEPGHPDA---EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 +++ G P P+A V+ L G + T W A ++ L+ + Sbjct: 170 MMINGAPTDPNAFDFRKGAMNVLGPLFKSGKLHLAYSVMTPDWSPQNAFEESQQALTRLH 229 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLN-DA 281 NK+ V+A ND A G + AL+A + +PV G DA L + G + TV Sbjct: 230 -NKVNAVLAANDGTASGVIRALQAVGLAGKVPVTGQDATNGGLTFILEGLQSMTVFKYVP 288 Query: 282 NNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 A A D K A N K +NK++ VP V Sbjct: 289 EEAAAAAELAVAVATDTKPPAGLLNGKTNNKMIDVPSV 326 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 73/287 (25%), Positives = 129/287 (44%), Gaps = 33/287 (11%) Query: 48 EQDAKAAPDVQLLMN--DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 E K A ++ L +N D+ +D + Q++Q+ A G + IN D A +++ Sbjct: 67 ESAQKKADELGLAINFQDAADDSATQSNQLANAAASGTGVVIINPTDSDAMAPAVQQLVD 126 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 + +PVV ++ A+++ + A Y+ +D++ G K A +N +G+I Sbjct: 127 EKIPVVAVDR-----AVNNANVASYIASDNETGG--------KQAAKVLSDAINGEGEI- 172 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDK-GIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PN 223 ++L+G+ G + R + L D IK Q TA ++ A+ D L PN Sbjct: 173 -LVLQGKTGSSASRERGKGFDEGLKDNPNIKVVAKQ--TAEFERAKGLDVTTNLLQAHPN 229 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANN 283 ++ + A ND MA+GA+EAL + + V G D +AL +K G + ++ Sbjct: 230 ---VKAIFAENDEMALGAIEALGSKAGKDVKVIGFDGAEDALKAIKDGRMYASIAQQPVK 286 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A+ A L G+ A K ++V V K+N+ +FS Sbjct: 287 MAEQAVIEASKLLKGETA---------TKKMQVEVVAATKENVDKFS 324 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/282 (23%), Positives = 119/282 (42%), Gaps = 41/282 (14%) Query: 9 SAVMASMLFGAAA--HAADTR----IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 + V + LF A DTR G T ++ + + + IE+ +A D+ L+ Sbjct: 5 TIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDI-LITR 63 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK-- 120 D DQ KQN+QI ++ +G+ L + VD +E + +++PV + E S Sbjct: 64 DPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA 123 Query: 121 -----ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 D+YD D + +I A N +N+ + +KG P + Sbjct: 124 VVSTIVSDNYDAGVQCAKDMMKKKTSANIIIVNQKALN---SINERVKGFRDTIKGHPQY 180 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 E + + E+ K + E++ + +D VV+ ND Sbjct: 181 KIVEEKESAAEFEIAMKVM--EKIIYEKKNYD---------------------VVMGGND 217 Query: 236 AMAMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGT 276 +A+G + A++ +K+ + V+GVD P+ A++K+G L GT Sbjct: 218 PIALGCIAAMQMTDKTDQVMVYGVDGSPDGKAMIKAGFLEGT 259 >UniRef50_C7IGF5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=C7IGF5_9CLOT Length = 331 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 71/295 (24%), Positives = 127/295 (43%), Gaps = 29/295 (9%) Query: 37 DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 96 D+F + + A++ +AK PD++L + D Q + +N I+ + + + + A Sbjct: 53 DSFAAWLANAVKDEAKKYPDIKLDVFDGQANDDTENSMIENAITNKYDLVIVQPNNGEAQ 112 Query: 97 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW 156 +EK + + N + + A V + E + + N Sbjct: 113 RPYVEKVVKAGIHAITTNAR-----ISGIEGASSVDANPYEQAGVNARAAIEQIPQNA-- 165 Query: 157 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 + V+L G G+ A+ R KE +K + + A W+ +A M+ Sbjct: 166 --------KVVVLDGPSGNFHADERRKSWQKEFFEKRPDVKIVGEQIANWNKDEAMKYME 217 Query: 217 AWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAG 275 W+ + +KI+ VI+ ND MA GA+E +K + K ++ +GVD EAL L++ G + Sbjct: 218 DWIQ--SNDKIDAVISMNDNMAAGAIEVVKDNPKFKNMLAYGVDGTAEALLLIQEGKMTS 275 Query: 276 TVLNDANNQAKATFDLA-KNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 T + A +DLA K L G G +ID + P V+KDN+ ++ Sbjct: 276 TCMQSA-------YDLATKLLESGNKLLTGGEKQIDTDIGN-PL--VNKDNVQQY 320 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 27/217 (12%) Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI---EKARGQNVPVVFFNKEPSRKA 121 + D+ Q ++ ++ K AL L+ P + G ++ EKA+ N+PV+ N + A Sbjct: 116 EGDEQGQLSIVEDMINKKYTAL---LLSPISDGNLVPGVEKAKKNNIPVINVNDGIIKNA 172 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 +VG + I+ G+L A W + + + +G++ V+ G P A R Sbjct: 173 ------DIFVGPKA----IMNGEL-AAEWISKK---IGGEGEVAIVI--GMPKAFAARQR 216 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAMG 240 T + + ++ A WD A+AKD + W+ PN ++ + NND MA+G Sbjct: 217 TLGFENWMKSNAAGVKIVEKQNADWDRAKAKDLAEIWIKKYPN---LKAIFCNNDVMALG 273 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTV 277 EA+ A +K I V GVD + EA ++ G + TV Sbjct: 274 VQEAVNA-SKRDILVVGVDGIKEAYESIRKGEMDATV 309 >UniRef50_D2Q8V2 ABC transporter (Substrate-binding protein) n=2 Tax=Bifidobacterium dentium RepID=D2Q8V2_9BIFI Length = 371 Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 117/282 (41%), Gaps = 36/282 (12%) Query: 71 QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYY 130 Q QI + G+ + + +D + G E+A+ ++ ++ R +++ YY Sbjct: 86 QTSQIQNMANNGMDYVVVASIDGTSTGAACEQAQSNGAKIIAYD----RLIMNTDAVDYY 141 Query: 131 VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT---YVIK 187 +E G +QG+ I K G K G L+ G P +A V+ Sbjct: 142 ATFSLEEVGKMQGEYIEKALGLKDG----KKGPFNVELMAGSPTDNNAGYYFKGAWSVLG 197 Query: 188 ELNDKGI-----------KTEQLQLDTAMWDTAQAKDKMDAWLSG--PNANKIEVVIANN 234 + G+ +TE + WD +A+++M+ ++ + K++ V+A N Sbjct: 198 KYYKSGVLQAKSGKVPADETEWQSIGIDNWDRQKAQNEMENRINSFYNDGTKLDAVLAQN 257 Query: 235 DAMAMGAVEALKAHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 DA A+G V A++ PV G DA + + G + TV D AKAT + K Sbjct: 258 DAEALGTVNAVEGAGWDYYPVITGQDAEKANVQAIVKGKQSETVYKDTRELAKATAQMIK 317 Query: 294 NLADGK--GAADGTNWKIDNKVVRVPY-----VGVDKDNLAE 328 +L DGK A D N N VP V VDK NL E Sbjct: 318 DLVDGKEPEAKDTFN----NGTKDVPTQLLTPVSVDKTNLKE 355 >UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=Bacteria RepID=XYLF_HAEIN Length = 332 Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 155/350 (44%), Gaps = 55/350 (15%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTI-----YKYDDNFMSVVRKAIEQDAKAAP 55 M K L+ V A +F ++AH+ D +IG++I ++ + V KA AK Sbjct: 1 MKIKSALLTLVGALTVFSSSAHSKDLKIGLSIDDLRLERWQKDRDIFVNKAESMGAK--- 57 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 + + + D S Q QI+ ++ K + L I + VI +A+ + + V+ +++ Sbjct: 58 ---VFVQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGIKVLAYDR 114 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 + LD +YV D+++ G +Q AK A + +G + L+ G P Sbjct: 115 LINNADLD-----FYVSFDNEKVGELQ----AKSIVA-----VKPEGN--YFLMGGSPVD 158 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLS-----------GPNA 224 +A+ +K L D I + ++++ W +D+WL+ N Sbjct: 159 NNAKLFRKGQMKVL-DPLIASGKIKVVGDQW--------VDSWLAEKALQIMENALTANK 209 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANN 283 N ++ V+A+NDA A GA++AL A S + + G DA A+ + +G+ TV Sbjct: 210 NNVDAVVASNDATAGGAIQALSAQGLSGKVAISGQDADLAAIKRIVNGSQTMTVYKPITK 269 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY-----VGVDKDNLAE 328 A ++A L GK N +++N + VP + VDK N+ E Sbjct: 270 LADKAAEIAVEL--GKNEKIEANAELNNGLKNVPAYLLDPIAVDKRNINE 317 >UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0QT42_MYCS2 Length = 365 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 116/279 (41%), Gaps = 37/279 (13%) Query: 71 QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYY 130 Q QI+ ++ KGVK L I +D ++ ++ A +PV+ +++ K + D YY Sbjct: 83 QVSQIENMITKGVKLLVIAPIDGSSLTNTLQHAADLKIPVISYDRL--IKGTPNVD--YY 138 Query: 131 VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY------ 184 D+ + G++Q + I G G L G P +A TY Sbjct: 139 ATFDNTKVGVLQANYIVDTLGVADG-----KGPFNLELFAGSPDDNNA----TYFFQGAM 189 Query: 185 -VIKELNDKG---IKTEQLQLD---TAMWDTAQAKDKMDAWLS-GPNANKIEVVIANNDA 236 V++ D G +K+ Q D T WD A+ +MD LS + +++ V++ D Sbjct: 190 SVLQPYIDSGKLVVKSGQTTFDQIATLRWDGGLAQSRMDNLLSQAYTSGRVDAVLSPYDG 249 Query: 237 MAMGAVEALKA--HNKSSIPVFGVDALPEALALVKS---GALAGTVLNDANNQAKATFDL 291 ++ G + ALK+ + ++ P+ V LA VKS G TV D AKA Sbjct: 250 ISRGVISALKSAGYGNAAKPLPIVTGQDAELASVKSIVAGEQTQTVFKDTRELAKAAVQE 309 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPY-----VGVDKDN 325 A + G DN V VP V VDK N Sbjct: 310 ADAVLTGGTPQVNDTETYDNGVKVVPSYLLDPVSVDKSN 348 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 46/338 (13%) Query: 5 VLTLSAVMASMLFGAAAHA-ADTR------IGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 +L L+A A +L G H A R G T ++ + V+ + IE+ +A D+ Sbjct: 7 LLILTA-GAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDI 65 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 LL D DQ KQN+QI ++ +G++ L +N VD ++ R V ++ N + Sbjct: 66 -LLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGII--NVDT 122 Query: 118 SRKALDSYDKAYYVGTDSKESG-IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 K DS + TD+ ++G + D++ + ++ + D IQ + E G Sbjct: 123 VVKDRDSV--ISIIETDNYQAGQLCALDMMKRK---DEAKIVILDNPIQTSITNREQGFL 177 Query: 177 DAEA---RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 D A V +E I+ M D + D V++ Sbjct: 178 DTIADNHNYQVVYREAAAGEIEVSS----HVMADLLRRDISFD------------VILGG 221 Query: 234 NDAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 ND A+GA+ AL+ A + + ++G+D P+ A++ G + GT + + + A Sbjct: 222 NDPTALGALAALQQARREEGVLIYGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETA 281 Query: 293 KNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 DG+ K + +P + +DNL EF Sbjct: 282 YRYLDGEPV---------EKYISMPSTMITRDNLHEFE 310 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 135/311 (43%), Gaps = 35/311 (11%) Query: 5 VLTLSAVMASM-----LFGAAAHAADTRIGVTIYKYDDN--FMSVVRKAIEQDAKAAPDV 57 VL+++ VM M AA+ D + +T+ +++ + E KA D+ Sbjct: 8 VLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFE---KAEKDL 64 Query: 58 QLLMN--DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 + +N D D ++Q + I ++ G + I+ VDP+A T +++A + V Sbjct: 65 NIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVCALTT 124 Query: 116 EPSRKALDSYDKAY-----YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + D+ D Y VG E G D+ A+ L++ G+I +++ Sbjct: 125 QIGTG--DAEDPVYPETVGLVGHIETEVGRTAMDIAAEA--------LDRSGKI--AIIE 172 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEV 229 G PG D E R I E N + E + W +A M + S P ++E+ Sbjct: 173 GTPGMSDTEGRKKG-IDEENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNP---EVEL 228 Query: 230 VIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 VI ++D MA+GA +AL+ A + + G+ +AL L+K G + GT++ +A Sbjct: 229 VICHSDNMAVGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAYTA 288 Query: 289 FDLAKNLADGK 299 + + G+ Sbjct: 289 LEATAKVVRGE 299 >UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional regulator n=21 Tax=Bacteria RepID=Q2RGX1_MOOTA Length = 381 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 74/283 (26%), Positives = 130/283 (45%), Gaps = 34/283 (12%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++L+ + D + Q Q + L+++G+ L + + A ++E A V V+ +++ Sbjct: 80 EVLVQSANGDDATQLSQAENLISQGINVLVVIPHNGDAMAPIVEAAHKAGVKVLAYDR-- 137 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + D Y+ D+ G +Q + + K K + ++ L+ G P + Sbjct: 138 ---LIRNADVDLYISFDNVRVGELQAEYLTK-----------KVPKGKYFLMGGSPTDNN 183 Query: 178 AE---ARTTYVIKELNDKG---IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 A+ V+K L DKG + +Q D W +A M+ L+ N N+I+ V+ Sbjct: 184 AKLFRQGQMNVLKPLIDKGDIKVVGDQWVKD---WLPEEAMKIMENALTS-NNNQIDAVV 239 Query: 232 ANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 A+ND+ A GA++AL A N + + + G DA A + G + TV A + Sbjct: 240 ASNDSTAGGAIQALAAQNLAGKVAISGQDADLAACQRIVEGTQSMTVYKPITTLATRAAE 299 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYV-----GVDKDNLAE 328 +A LA KG G N K++N + VP V VDKDN+ + Sbjct: 300 VAVALA--KGENIGANNKVNNGKIDVPSVLLTPIMVDKDNMVQ 340 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 71/314 (22%), Positives = 140/314 (44%), Gaps = 43/314 (13%) Query: 4 KVLTLSAVMASMLFGA--------AAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAK 52 +++ + V A+M+ GA A AD + IG+ + +F + +++++ +AK Sbjct: 8 RIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAK 67 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 ++++++D++ D + Q +QI +++ V A+ AAG ++ A +PVV Sbjct: 68 KK-GIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVT 126 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 ++ P + S ++ +DS + G+ + K G+ Q +L+G+ Sbjct: 127 VDRNPPGEPGKS-----FIASDSVAAARTLGNYVVKE----------SGGKGQLAILQGQ 171 Query: 173 PG-HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDK-----MDAWLSGPNANK 226 G P + + + N GIK Q A W A+DK D + P Sbjct: 172 IGTTPQVDRQKGFGQALKNAPGIKVVSQQ--PADW----AQDKAYSVSQDMLQAHPG--- 222 Query: 227 IEVVIANNDAMAMGAVEALKAH-NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 I+++ DAMA+GA +A+KA +K + G D L V+ G + T++ Sbjct: 223 IDILWGQADAMALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMG 282 Query: 286 KATFDLAKNLADGK 299 + + + A ++ GK Sbjct: 283 RMSVNTAVDIIKGK 296 >UniRef50_B1VWK1 Putative ABC transporter solute-binding protein n=7 Tax=Streptomyces RepID=B1VWK1_STRGG Length = 370 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 72/271 (26%), Positives = 119/271 (43%), Gaps = 22/271 (8%) Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 +++ D + Q +D ++ V AL + VD A I+KA+ +PVV F++ + + Sbjct: 85 NAKQDANAQAQHVDTMITNKVDALIVGAVDSKAIANSIKKAKDAGIPVVAFDR-LAEGPI 143 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 D+ Y D++E G QG + + D G I V++ G P+A A Sbjct: 144 DA-----YTSFDNEEVGRAQGTALLEALG-----DKADGGTI--VMMNGAITDPNA-ALF 190 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 K + D +K + + DT W A M+A ++ +KI+ V + ND MA G + Sbjct: 191 KKGAKSVLDGKVKYGK-EYDTKEWKPENANANMEAAITALGKDKIDGVYSANDGMAGGII 249 Query: 243 EALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 ALK S + PV G DA + + +G +V + ++A LA G+ Sbjct: 250 TALKGAGISPLPPVTGQDAELAGVQRIVTGEQFMSVYKSYPAEGIVAAEMAVALAKGEKL 309 Query: 302 ADGTNWKIDN------KVVRVPYVGVDKDNL 326 K+D+ V VP V + KDN+ Sbjct: 310 DSIATSKVDSATTKGIPTVLVPVVSLTKDNI 340 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 65/290 (22%), Positives = 130/290 (44%), Gaps = 23/290 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAH--AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M KK S + A++L A+ A++ I + +D+ F + + AK Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKEL-GYD 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D +KQN I+ +A+ KA+ ++ D A+ +E+ + +P +++E + Sbjct: 60 TLVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 + + + I+ + A + +L DG ++V L G +A Sbjct: 120 KTGI-------------AVTQIVSNNFQGAQLAGEKFAELMGDGG-EYVELLGPESDTNA 165 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANNDAM 237 + R+ ++ D + + + +A W +A +M++ L + PN I+ VI ND+M Sbjct: 166 QVRSEG-FHDILDNFPEFKMVARQSANWSQTEAFSRMESILQANPN---IKGVITGNDSM 221 Query: 238 AMGAVEALKAHNKSSIPVFGVDALPEAL-ALVKSGALAGTVLNDANNQAK 286 A+GA AL+A + + + G D L +++K + T++ A QA+ Sbjct: 222 ALGAEAALQAAGRKDVFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQ 271 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 57.4 bits (137), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 70/264 (26%), Positives = 115/264 (43%), Gaps = 30/264 (11%) Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 P+ L +D Q Q Q I +A+ V +A++ V TV+++A+ +PVV Sbjct: 74 PNFDLKFSDGQQKQENQIKAIRSFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVI-- 131 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW--DLNKDGQIQFVLLKGE 172 D+ V DS + D++A+ A Q KD + L+G Sbjct: 132 ----------VDRKVTVSDDSLYKCFLGSDMVAEGKKAAQILIDQFGKDATLNIAELQGT 181 Query: 173 PGHPDAEARTTYV---IKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 G R IK+ N K IK++ T + A+ K+ M+A+L + +KI Sbjct: 182 VGSTAMVGRQQGFNDAIKDCPNYKIIKSQ-----TGDFTRAKGKEVMEAFLKS-DGDKIN 235 Query: 229 VVIANNDAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANN-Q 284 V+ ++ND MAMGA++A++ + K I + VD + + + G TV + N Sbjct: 236 VLWSHNDDMAMGAIQAIEEYGKKPGKDIFIVSVDGIKDIFQAMVDGKANATV--ECNPLL 293 Query: 285 AKATFDLAKNLADGKGAADGTNWK 308 ++AKN+ DGK N K Sbjct: 294 GPQLLEVAKNILDGKEVERTINSK 317 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 27/202 (13%) Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 ND+ +Q QI+ + GV L I+ A V++KA + +PV+ F+ RKA Y Sbjct: 68 NDK-RQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFD----RKADGKY 122 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ-IQFVLLKGEPGHPDAEARTTY 184 ++G D+ E G GD +A+ L+ G I+ + LKG P E + Sbjct: 123 TA--FIGADNVEVGRQMGDYVARQ--------LDYHGNVIELMGLKGSS--PAIERHRGF 170 Query: 185 VIKELNDKGIK-TEQLQLDTAMWDTAQAKDKMDAW---LSGPNANKIEVVIANNDAMAMG 240 + + GIK E LQ D W A + + A+ + I V A ND MAMG Sbjct: 171 IERISRYPGIKLVESLQGD---WTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAMG 227 Query: 241 AVEALKAHNKSSIPVFGVDALP 262 A EA KS++ GVDALP Sbjct: 228 AREA-GLLPKSTL-FCGVDALP 247 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 145/341 (42%), Gaps = 35/341 (10%) Query: 1 MNKKV--LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K++ L L+ V SM + + A +IG + F + + + ++ AK Sbjct: 1 MKKRLIGLLLAGVTISM---SVSAAEPLKIGFANRTLNGAFFNGLTEYMKIHAKE-KGYT 56 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D++ D +KQ ++ +L++G+ L +N DP A + E A+ VP V + + + Sbjct: 57 LITTDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIA 116 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 +A V T + + +LI ++ G D + + L G G+ Sbjct: 117 LEAP--------VITRVQANNAKNNNLIGEYAVGQFG-----DKPMNCIFLSGNQGNLVG 163 Query: 179 EARTTYVIKELNDKGIKTEQ------LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 +AR + + + ++ L WD M+ + +KI V + Sbjct: 164 QARRDNFLLGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVA-QGDKINCVYS 222 Query: 233 NNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 D MA+GA+ ALKA NK ++ V+ D + L VK G L T N+ + ++ Sbjct: 223 EMDDMALGAIRALKAANKLDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEV 282 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ A T++ V +P + + KDN+ ++ K+ Sbjct: 283 I-----GQYQAGQTSFP---DYVYIPSILITKDNVDKYYKE 315 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 67/299 (22%), Positives = 126/299 (42%), Gaps = 30/299 (10%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGV+I ++ + + AI+ AK + +L ++D+QND + Q + + +++ V A+ Sbjct: 51 IGVSISTTNNPYFVSMNNAIKSMAKE-KNTKLTVSDAQNDSATQLNNVQNFISQNVDAIL 109 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 IN VD A I+ A ++PV+ ++ + + + V +D+ +G + + Sbjct: 110 INPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTVLT-----TVASDNVAAGKMAAQAVE 164 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 K N ++ + L G PG R E G+ L +A +D Sbjct: 165 KLVGKN----------VKVLELSGTPGASATIDRGKGFNSEAKTLGLNI--LSSQSANFD 212 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALAL 267 + L + ++ + A ND MA+GA +A++A + I +FG+D E Sbjct: 213 RTTGLNTTQNMLQ--SHKDVQAIFAQNDEMALGAAKAVQATGQ-KIAIFGIDGESETHDA 269 Query: 268 VKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 +K+G + T+ + + GK A ++ P VDKDN+ Sbjct: 270 IKAGTMTATIAQQPAKIGEMALQATYDYYQGKKIA---------HMINSPIYLVDKDNV 319 >UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AIY5_TSUPA Length = 366 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 21/236 (8%) Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD 126 D++KQ+ Q++ + G KA+ + V+ AG ++ A+ +PV+ ++ + + D Sbjct: 86 DEAKQSQQVETAITAGAKAIVLGPVNGDGAGGMVASAKNAKIPVIAYD-----RFIAGAD 140 Query: 127 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVI 186 YY+ D+++ G IQG + G+ ++L G P P+A Sbjct: 141 --YYLSFDNEQVGRIQGKSLVDALG----------GRGNILMLNGAPSDPNAAQFKAGAR 188 Query: 187 KELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK 246 + GI+ + D W +A+ + LS + I+ V A ND A G V AL Sbjct: 189 SVIGQSGIRVIG-EYDNPDWSPDKAQQFVTDQLSRNKPSDIQGVYAANDGQAGGVVAALT 247 Query: 247 AHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 S+ P+ G DA A+ + +G + TV +A ++A LA GK Sbjct: 248 GAGVSADALPPITGQDAELAAVQRIVAGRQSMTVYKPIAIEANTAAEVAVALATGK 303 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 57/227 (25%), Positives = 102/227 (44%), Gaps = 22/227 (9%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + L D+Q++ Q + +A V A+ + + + V++ A+ +PV+ ++ Sbjct: 52 IDLRFVDAQSNVDNQMKALRSFIADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDR- 110 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + D A ++G+D + G + + I H D + + V L+GEPG Sbjct: 111 --KIVADPSLYATFIGSDFFKEGQMAAEWILAH----------ADQKRKIVELQGEPGSS 158 Query: 177 DAEARTTYVIKEL---NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 A R + G + + A + Q + M L+ + + IE+V A+ Sbjct: 159 AANERQRAFASTMATHTSDGFRI--VARKVANFRRDQGRQAMAELLT-THGSDIEIVFAH 215 Query: 234 NDAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTV 277 ND MA+GA+EA++A +S I V +DA+ A+ V SG L TV Sbjct: 216 NDDMALGAIEAIEAVGRSPGRDIMVVSIDAIKTAVEAVASGKLNCTV 262 >UniRef50_B1BAU0 Putative transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1BAU0_CLOBO Length = 342 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/284 (23%), Positives = 120/284 (42%), Gaps = 27/284 (9%) Query: 37 DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD---- 92 D F+ ++K I++D K + N SK + QI + ++ LAI+ VD Sbjct: 68 DKFIEEIKKNIQKDCKEKEYNFISSN------SKDSSQIVKYQKQTLQELAISKVDGIIL 121 Query: 93 -PAAAGTV---IEKARGQNVPVVFF--NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 PA++ + I+K + +P+V N + + + +K +V D+++S + L+ Sbjct: 122 APASSTELVLEIKKIQEAKIPMVIIDTNIDENEAKKNGLEKIPFVTVDNEKSAYDETKLV 181 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 + I+ +++ G+ +A R IK L + I + + ++ W Sbjct: 182 INKMIEEKKI-------IKPLIICGDLNSINAMERKDGTIKALAENSI--QPVSIEDGKW 232 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALA 266 + + L I ++I ND MA+GA + L+ N+ I + G D P + Sbjct: 233 KISNGYNITKIQLQ--QYQDINLIICGNDEMALGANQYLQETNRGDIAIVGFDGSPRTIE 290 Query: 267 LVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 +K G + T+ D AKA+ N GK D N K D Sbjct: 291 SIKKGQIKLTIKQDKKEIAKASLQSIINSIQGKSNLDIVNIKTD 334 >UniRef50_C9Z5F4 Putative lipoprotein n=2 Tax=Streptomyces RepID=C9Z5F4_STRSW Length = 343 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 17/210 (8%) Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 +++ D Q Q+ ++ V + ++ VD A ++ A +PV+ +++ ++ + Sbjct: 57 NAEKDPETQTGQMKQMVEDKVDIIIVDAVDSKAIAPAVQSAHDAGIPVIAYDRL-AQGPI 115 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 D Y V D++ G +QG + + DL + V++ G P P+A Sbjct: 116 DGY-----VSFDNELVGQVQGRSLVE--------DLGDSAANKIVMMNGSPTDPNAAMFK 162 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + EL DK +E DT WD AK M+ +S + I+ V A ND +A + Sbjct: 163 EGALSELQDKVTISETF--DTKDWDPVVAKANMEKAVSKLGVDNIDAVYAANDGIAGAVI 220 Query: 243 EALKAHNKSSI-PVFGVDALPEALALVKSG 271 + LK + + PV G DA +A+ + +G Sbjct: 221 DVLKTAGVAKVPPVTGQDADLDAVQRILTG 250 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 76/339 (22%), Positives = 146/339 (43%), Gaps = 47/339 (13%) Query: 3 KKVLTLSAVMASMLFGAAAH------AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 K ++ L + M+FG ++ R G T ++ F V+ I++ +A D Sbjct: 12 KMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGD 71 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V L+ D D KQN+QI L+ + V A+ +N +D ++ A+ +PV+ + Sbjct: 72 V-LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAP 130 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 ++L + + +++ ++G+ L AK ++K + +LL+ Sbjct: 131 IYDESLVNCS----IASNNYDAGV----LCAKDM-------MSKRDHAKIILLEHATAKS 175 Query: 177 DAEARTTY---VIKELNDKGIKTEQL--QLDTAMWDTAQA-KDKMDAWLSGPNANKIEVV 230 E + + N + I Q++ AM Q K+ D ++VV Sbjct: 176 AVERIQGFLDTIASNANYQVINRADCDGQIEIAMPTMKQMLKETPD----------VDVV 225 Query: 231 IANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 +A ND A+GA+ A+++ ++ V+GVD P+ L+ +G + T + + Sbjct: 226 MALNDRSALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQ 285 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 AK L + K KI+ K + VP + +DN++ F Sbjct: 286 KAKALLENK--------KIEKK-IEVPVELISRDNISNF 315 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 20/227 (8%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 ++L +D+Q Q Q I +A+ V +A + V + V+ +A+ +PVV ++ Sbjct: 62 IELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR- 120 Query: 117 PSRKALDSYDKAYYV---GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 A+++ D + YV G+D E G G W + D G + V L+G Sbjct: 121 ----AVNTKDTSLYVTFMGSDFVEEGRKAG-----RWLVEKMKDAK--GDVNIVELQGTV 169 Query: 174 GHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 G A R +E+ K + ++ T + A+ K+ M+A+L KI V+ A+ Sbjct: 170 GSAPAIDRKKG-FEEVVKADPKFKIIRSQTGDFTRAKGKEVMEAFLKA-EGRKINVLYAH 227 Query: 234 NDAMAMGAVEALKAHN---KSSIPVFGVDALPEALALVKSGALAGTV 277 ND MA+GA++A++ I + +DA+ A + +G L TV Sbjct: 228 NDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMAGKLNVTV 274 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 116/270 (42%), Gaps = 29/270 (10%) Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 S+ DQ Q + L+++G AL + A +E A VPV+ N A Sbjct: 96 SEGDQLGQLAIAENLISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSA-- 153 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 A YVG K +G+ +A + AN+ DG + +++G+PG A RT Sbjct: 154 ----ANYVGNVQKGNGVN----VANWFIANR-----PDGG-KVAVIEGQPGVYAAGQRTA 199 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + + G K E + A W +A + L + ANND MA+G VE Sbjct: 200 GFTETITAGG-KFEVVASVPANWSREEAFNAASTILQ--QYPDLIGFYANNDGMALGVVE 256 Query: 244 ALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 A+KA K+ + VFG D + +A A V++G L GTV + + ++A L G+ Sbjct: 257 AVKAAGKAEQVAVFGTDGISDAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLP 316 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 +VV P + KDN+ ++ Sbjct: 317 ---------RVVATPQALITKDNVETYATS 337 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/282 (21%), Positives = 122/282 (43%), Gaps = 30/282 (10%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 ++G + DN+ + K+++ +A PD+ L + D++N + Q I+ + GV L Sbjct: 29 KVGFSQAMTTDNWRREMNKSMKLEASMHPDIILEIKDAENHITNQVAHIEEFIKDGVDVL 88 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 ++ + IEKA +P + +++ ++ + YVG ++ E G I Sbjct: 89 IVSPIQSIPITPAIEKAMAAGIPTIIIDRK-----IEGQNFTAYVGANNIEIGRNAAKYI 143 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM- 205 H + G+ + + G+ G A R+ K L+ +L++ + Sbjct: 144 LSHSS----------GKADIIEITGQEGSSPAYERSMGFKKTLDS----VPELKVRHVIK 189 Query: 206 --WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDAL- 261 W+ + K+ L A + + A+ND MA+GA E ++ + + I + GVD + Sbjct: 190 GDWEKTSIQSKLSDLLDSVKAP--DYIFAHNDRMALGAWEVARSKSLEEEINIIGVDGVF 247 Query: 262 -PE-ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 P + LVK L T+L T LA+++ +G+ Sbjct: 248 GPNGGIQLVKDNILNATILYPTG--GMETIKLAEDILNGENV 287 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 103/255 (40%), Gaps = 22/255 (8%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG + DD + + ++++ + +L+ D+ + + Q QI+ LL G+ L Sbjct: 27 IGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEELLRNGIHLLI 86 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 ++ + VIEKA Q VPVV + R+ Y A YVG D+ + G G+ A Sbjct: 87 VSPNESDPLTPVIEKAYKQGVPVVVVD----RRTSSPYYTA-YVGGDNYQVGKTVGEYAA 141 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 N + + + G P A R ++ L + ++ W Sbjct: 142 ALLGGNG----------KMIEITGLPRSSPASDRHRGLVDALATRP-SIRRVATLNGQWQ 190 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALA 266 AK ++ L P ++++ A N+ MAMGA E I V GVD LP Sbjct: 191 KDIAKSELRKVL--PRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRVIGVDGLPGQFG 248 Query: 267 ---LVKSGALAGTVL 278 +V G + T L Sbjct: 249 DIQMVYDGHITATAL 263 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 51/346 (14%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT----------RIGVTIYKYDDNFMSVVRKAIEQD 50 + K + +AV + L AA + DT +IG+ + + F S + K ++ Sbjct: 5 VKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKG-AKE 63 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A A+ D+Q D + QN QID + +GV + I+ VD IE+A+ + V Sbjct: 64 AAASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIV 123 Query: 111 VFFNKEPSRKALDSYDKAY--YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 + A+D+ K+ V TD+ ++G + ++ G G+ +L Sbjct: 124 I---------AVDTPAKSADAVVMTDAVQAG----EKSCQYLFEQMG------GKGNVLL 164 Query: 169 LKGEPGHP--DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 + G P D V+K+ + +Q + A D + A P+ Sbjct: 165 VDGTPLQTIRDRITGCNNVVKKFPGIKVVGQQASKNDRASGLAVTTDMLTAT---PD--- 218 Query: 227 IEVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALA-LVKSGA-LAGTVLNDANN 283 ++ + ND A+GAV A++ AH ++ V GVD PEA+A L +SG+ GT + Sbjct: 219 VQGIFGMNDPSALGAVLAVQQAHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAE 278 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + ++A+N+ D K A+ T + +P V +D ++++ Sbjct: 279 MVRKAVEVAQNIIDNKPPAETT--------ILIPSELVTRDTVSQY 316 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 41/255 (16%) Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL-----AINLVDPAAAGTVIEKARGQNVPV 110 +V+L + + +Q QID L+ +G+ L +N + PA I++A + +PV Sbjct: 54 NVELKFAAAYDSDERQVQQIDSLMNEGIDLLIVAPNQVNTISPA-----IDRAYDKGIPV 108 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + F ++ + ++ + D+ E G + G+ I L+ G + + +K Sbjct: 109 IVFERKTGSQKYTAF-----ISADNYEMGHVMGEYIVSR--------LHGKGNV--LEIK 153 Query: 171 GEPGHPDAEARTTYVIKELNDK-GIKT-EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 G G A R + + D+ GIK LQ D W A A K WL+ ++ Sbjct: 154 GLAGSSPAIERHNGFMDAIKDEPGIKVVGSLQGD---WTEATACQKSKEWLAANEGVPVD 210 Query: 229 VVIANNDAMAMGAVEALKAHNKSSIPVF-GVDALP---EALALVKSGALAGTVLNDANNQ 284 +V ND AMGA EAL P++ G+D LP + LV+ L + + + Sbjct: 211 LVFGANDRTAMGAREALGEK-----PLYCGIDGLPGKNGGIQLVRDSLLDASFIYPTH-- 263 Query: 285 AKATFDLAKNLADGK 299 DLA + +G+ Sbjct: 264 GDQLMDLAIRILEGQ 278 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 55/246 (22%), Positives = 116/246 (47%), Gaps = 20/246 (8%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L++ D+Q++ +KQ ++ L+A+ + L ++ + T ++ A+ +VPV+ ++ Sbjct: 120 KLIVTDAQDNTAKQVSDVEDLIAQNIDLLILSPREFEGLETALQTAKENSVPVILVDRLA 179 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +A D Y+ T D + + AA + G + L G G Sbjct: 180 KGEA--GVDYVTYIAT----------DFVWEGQAAGEWLKDKTGGTCNIIELTGTVGSSS 227 Query: 178 AEARTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 A+ R T ++ ++G+K + T ++ ++ + M+ L + +++ V +ND Sbjct: 228 AQDRATGFAGVVDQNEGMKI--IASQTGNFERSEGQKVMENLLQA-HGGEVDAVFCHNDQ 284 Query: 237 MAMGAVEALKAHN---KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 MA+GAV+A+KA I V G+D ++ V +G ++ TV++ + TFD + Sbjct: 285 MALGAVQAIKAAGYKPNEDILVIGIDGEMDSFKSVIAGEMSATVVS-SPMYGPITFDTVE 343 Query: 294 NLADGK 299 + G+ Sbjct: 344 KILAGQ 349 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 74/296 (25%), Positives = 125/296 (42%), Gaps = 34/296 (11%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKA---APDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 IGV++ F + ++ A+E+ AK DVQ D+ D +KQ Q+ + K V Sbjct: 61 IGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQ----DAAGDANKQLGQVQDFITKKVD 116 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 A+ I + A + ++IE A +PV + K + +V TD+K+ G + + Sbjct: 117 AIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKPV------THVATDNKKGGQLAAE 170 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 + + K G + + D E T +KE N IK +Q Sbjct: 171 YVVNNILT------EKKGNVAVITYSEIESCVDRETGFTDYLKE-NAPDIKVVDVQ--NY 221 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 264 D +A D M L + I+VV D A+GA+ ++ A N ++ + G D PE Sbjct: 222 SGDQQKAADVMQNML--LKNDNIDVVFCVGDPAAIGALSSITAANAAT-KIIGYDGNPEG 278 Query: 265 LALVKSGA-LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 +A +K G V D K T + K +G+ K+D++++ PY+ Sbjct: 279 VAEIKKGGNWVADVAQDPAGIGKTTLEAIKKHLEGE--------KVDSEILIAPYI 326 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 105/250 (42%), Gaps = 29/250 (11%) Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V + D+ +D + I+ +LAK + L I ++ V+++A + VPV+ Sbjct: 80 VNYIYTDANDDMATHVANIEDMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVIL---- 135 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 +R Y Y +D G +LI + K + V L+G G Sbjct: 136 SARTTQGEYVTTVY--SDQAWEGERCAELIGE-----------KIPDAKVVELRGIEGTS 182 Query: 177 DAEARTT----YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 R + ++ D I EQ TA + +A D M L + I+ V Sbjct: 183 SVAGREKGFRDVMAEQYPDMEIVVEQ----TANFSRQEAMDAMANILQAKGPDAIDAVYC 238 Query: 233 NNDAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 +ND MA+GAV+A+K + I V G+D EA LVKSG + GTV + F Sbjct: 239 HNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQKEAWELVKSGEMLGTV-QCSPKHGPTVF 297 Query: 290 DLAKNLADGK 299 ++ + + DG+ Sbjct: 298 EVIQKILDGE 307 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 75/332 (22%), Positives = 150/332 (45%), Gaps = 37/332 (11%) Query: 8 LSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQND 67 L A++ + F + H IGV+ + F + + I++ + V + ++ D Sbjct: 21 LPAILPACGFSESHH--KLTIGVSYPTANSPFWNAYTRFIDEGSHQL-GVYINAVSAEED 77 Query: 68 QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK 127 + KQ ++ L+ +G+ L + + A T++ A N+PVV ++ P + + Sbjct: 78 EQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKNA 137 Query: 128 AY--YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 Y ++G +++++G IA+ L G +F+ L G PG+ A+ R + Sbjct: 138 DYVAFLGPNNEKAG----SGIAE--------ALMAGGGSKFLALGGMPGNSVAQGRKAGL 185 Query: 186 IKELNDKGIKTEQLQL--DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 L G + Q Q D+ A A++ + A +G +AN I ND + GA++ Sbjct: 186 ESALTAVGHRLVQFQYAGDSEDKGLAAAENMLQAHPAG-DANAIWCF---NDKLCQGAIK 241 Query: 244 ALKAHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLA--KNLADGKG 300 A+ N+ +F G+D P+A+A +++G ++ + + F LA G+ Sbjct: 242 AVYNANREKEFIFGGMDLTPQAIAAIENGLYTVSL---GAHWLEGGFGLAILYRKIHGQD 298 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A+ ++V++ + VDK N+A+F + Sbjct: 299 PAE--------RMVKLDLLKVDKSNVAKFKAR 322 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/250 (26%), Positives = 106/250 (42%), Gaps = 35/250 (14%) Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA---KGVKALAINLVDPAAAGTVIEKAR 104 E D + + L+ + + QS +DQI + A G+ A+A+ L + A I +A Sbjct: 94 EIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWINDGIDAIAVALYNEGALLPSIRRAT 153 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYV---GTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +PV FN + D YYV G D + G Q I D D Sbjct: 154 EAGIPVFLFNSPFA-------DNPYYVSDVGYDQSDGGRAQAQWIV---------DTYGD 197 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL---DTAMWDTAQAKDKMDAW 218 +++ +L+G PG T+ +K N+ K ++ A W AQ + Sbjct: 198 KEVKIGILEGLPG-----PHTSQRMKGFNEIISKHPNFKIVAQQPAGWVRAQGLSVTENM 252 Query: 219 LSGPNANK-IEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGT 276 + AN IEV++A D MA+G ++ALKA + + G + + EA A + +G + T Sbjct: 253 FT---ANPDIEVLVALYDEMALGGLQALKAKGLNGKVAIVGYENMKEANAAILTGDFSAT 309 Query: 277 VLNDANNQAK 286 V A + + Sbjct: 310 VDTGAKEEGR 319 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 63/266 (23%), Positives = 110/266 (41%), Gaps = 30/266 (11%) Query: 39 FMSVVRKAIEQDAK-AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAG 97 F ++ IE AK P V++ + DS+++ + Q + + V + I+ D A+ Sbjct: 67 FWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQDAITNKVDGIVISPTDSASCI 126 Query: 98 TVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWD 157 V+ A +PVV + DS + ++ TD+ G+ +A Sbjct: 127 AVLSAAEEAGIPVVICDI-----GTDSGEYVSFISTDNSGGAKKLGEYVADK-------- 173 Query: 158 LNKDGQIQFVLLKGEPGHPDAEARTTYVI-KELNDKGIKTEQLQLDTAMWDTAQAKDKM- 215 LNK +I + L +AR V+ KE ++GIK + ++D + + + Sbjct: 174 LNKGDEIAQIALN--------QARKNGVLRKEGFEEGIKEKLKEVDFRQMEKVNRDEGVR 225 Query: 216 ---DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGA 272 D S PN ++ + +++ +MGAV ALK N + G D PE + +KSG Sbjct: 226 YTQDLITSYPN---LKCIFCHSEDPSMGAVTALKEINNDKCKIVGFDCSPEVVEAIKSGD 282 Query: 273 LAGTVLNDANNQAKATFDLAKNLADG 298 + T + D K DG Sbjct: 283 ILATAAQQPVFMGRTAVDCLKTHLDG 308 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 23/253 (9%) Query: 1 MNKKVLTL---SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 MNKKVL + +AV ASM G +A IG ++ ++ + K E Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L + D ND +KQ + + + +G+ + I + A TV+++A+ +PV+ ++E Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDG-QIQFVLLKGEPGHP 176 A YD +VGT + G+ G+ W A Q DG + + + ++G G Sbjct: 158 EADA-SMYDA--WVGTAPYDEGVTAGN-----WLAEQ-----LDGAEAKILQIEGSVGAS 204 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQ--AKDKMDAWLSGPNANKIEVVIANN 234 A RT + + + +E LD+ D Q + M++++ + VV+ N Sbjct: 205 AAIGRTDGFAEVMAE---HSEWELLDSQSGDFTQDGGQAVMESFIK-TYEGQFNVVVCQN 260 Query: 235 DAMAMGAVEALKA 247 D A GA++A+ A Sbjct: 261 DNEAYGAMDAMDA 273 >UniRef50_B1Y1T3 ABC sugar transporter, periplasmic solute-binding protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1T3_LEPCP Length = 355 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 121/286 (42%), Gaps = 27/286 (9%) Query: 52 KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 K AP ++++ ++Q D S+Q ++ +++G K + D + + A VPVV Sbjct: 53 KKAPQAKVIVQNAQGDPSRQQRLVEDAISQGAKVIVYTSADANLSAGSLAAAAAAKVPVV 112 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQG----DLIAKHWAANQGWDLNKDGQIQFV 167 ++ + D+ +V DS G QG +LI+K +NK ++ Sbjct: 113 LYDHDAVGGKADA-----HVVFDSLSVGQAQGKRAAELISK---------INKP-VVKVA 157 Query: 168 LLK---GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 +K GE G EA +K L G + T WD +A+ + L+ N Sbjct: 158 RIKGNQGEYGTGQYEAGQNEFLKPLIASGKVKVVCEQYTENWDPVKAQSFAEDCLT-RNK 216 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDA 281 ++V + ND G+V AL + + G DA EAL + G +VL D Sbjct: 217 GDVDVFLGMNDGTTGGSVAALISQGYKPGQKLVTGGQDATVEALRYIAMGWQDNSVLKDL 276 Query: 282 NNQAKATFDLAKNLADGKGAADG-TNWKIDNKVVRVPYVGVDKDNL 326 +A D+ +L GKG N K++NK + VP V + N+ Sbjct: 277 KVEATYAADVVASLLGGKGVPKNLINGKVNNKFMDVPAVFLPVSNI 322 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +++G G +AE R I+ ++ T + ++A W +A + + A L N N I Sbjct: 189 IIEGIRGALNAELRKNGAIRAFSESKFAT-LVATESANWKIDEAFE-LAAKLYNKNPN-I 245 Query: 228 EVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 + ND MA+G +E L++ K ++ V DA+P+AL V+SG L TV DA Q Sbjct: 246 GAIFCANDMMALGVIEYLQSTGKDNVQVVAFDAIPQALNAVQSGVLLATVDQDAAEQGYQ 305 Query: 288 TFDLAKNLADGK 299 A N+ GK Sbjct: 306 GILSANNILSGK 317 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 72/312 (23%), Positives = 135/312 (43%), Gaps = 37/312 (11%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +IGV I + F ++ E+ A+ ++++ D+++D Q D ++ ++ G A Sbjct: 91 KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL----DSYDKAYYVGTDSKESGII 141 + ++ +D I A +PV+ +AL D V + + S + Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFEEQGS-TV 209 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 D+I++ +DG + +L G G + RT + TE ++L Sbjct: 210 ANDMISRM----------EDGG-KVAILAGLEGAGQSVGRTNGAKTVFEN----TEGVEL 254 Query: 202 DTAM---WDTAQAKDKM-DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 A WDT +A + D + P+ ++ + A ND MA+ AV+AL+ + V+G Sbjct: 255 VAAQACDWDTEKAYEATKDILTAHPD---LKGIFACNDNMALAAVQALQEMGNKDVMVYG 311 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VD +A A ++ G + G++ + KA ++A + GK D V +P Sbjct: 312 VDYTTDAKAAIEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKD---------PVYLP 362 Query: 318 YVGVDKDNLAEF 329 V +DN+A+F Sbjct: 363 LTLVTQDNVADF 374 >UniRef50_B9MLQ1 Monosaccharide-transporting ATPase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ1_ANATD Length = 362 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 70/275 (25%), Positives = 120/275 (43%), Gaps = 30/275 (10%) Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +N ++ND +Q +Q+ LL+K + L I + + + A+ + + V+ +++ Sbjct: 90 VNANEND-VEQINQVKYLLSKNINILIIVPNNYEKCSSAVNLAKKKGIKVISYDRLVKNS 148 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +D Y V ++ + G +L+AK W L K +V L G+PG + + Sbjct: 149 DIDVY-----VSFNNYKVG----ELMAK-------WLLKKVPYGNYVFLLGDPGDYNVQM 192 Query: 181 -RTTY--VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 + Y V+ L K L+ W A + ++ L +I+ V+A+ND++ Sbjct: 193 IKEGYHKVLDSLIQKKQINSLLEKYCYNWRKEYAYNYVNNLLE--EGKRIDAVLASNDSL 250 Query: 238 AMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A GA+ AL + S+PV G DA A + G TV + T D+ L Sbjct: 251 AEGAIMALSEKRLAGSVPVTGQDADISACQRIVKGTQLMTVYKPIDKLVDLTLDIVDRLI 310 Query: 297 DGKGAADGTNWKIDNKVVRVPY-----VGVDKDNL 326 GK N+ I+N VP +GVDK N+ Sbjct: 311 KGKLLK--PNYTINNGYKNVPTFFIDPIGVDKTNI 343 >UniRef50_A6C6N8 ABC transporter sugar-binding protein n=3 Tax=Bacteria RepID=A6C6N8_9PLAN Length = 375 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 117/275 (42%), Gaps = 39/275 (14%) Query: 71 QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYY 130 Q + LLA+G+ +AI+ +DPA ++++ ++ + + P + Y Sbjct: 79 QKRMVQELLAQGIDGIAISPIDPANQNDLLKEIADNSILITQDSDAPDSP------RECY 132 Query: 131 VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN 190 +G D+ E+G + G+L+ + L + G+I +L G G +A R VI E+ Sbjct: 133 IGMDNYEAGRMCGELVKEA--------LPEGGEI--MLFVGRLGQANARLRRQGVIDEVM 182 Query: 191 DKG------------IKTEQLQ-LDTAM--WDTAQAK-DKMDAWLSGPNANKIEVVIANN 234 D+ IK E+ LDT +D Q K + DA PN + + A N Sbjct: 183 DRSNDNTRYDEPGKVIKNEKYTILDTRTDDFDFPQGKANAQDAIAKYPNLKCMVGLFAYN 242 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 + + AV A I + D +L + G + GTV+ + + + Sbjct: 243 PPLCLEAVR--DAGKLDEIKIVSFDEEAASLQGIIDGTVVGTVVQNPYQYGYESVRVLNA 300 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 LA+G + +NK++ +P + K+N+ EF Sbjct: 301 LANGDKSV-----IPENKIIHIPARKITKENIKEF 330 >UniRef50_C5RKU9 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RKU9_CLOCL Length = 176 Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 7/136 (5%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQID--VLLAKGVK 84 + V + ++D F+S ++K +E +A D V+ ++ ++ + N+ +D +L + + Sbjct: 41 VSVLLNTFNDPFLSKLKKNLEDIERANNDKVKFTFYNTDDNLAILNEILDSIILNDENID 100 Query: 85 ALAINL--VDPAAAGTVIEKARGQNVPVVFFNKEP--SRKALDSYDKAYYVGTDSKESGI 140 INL + +I KA+ +N+P+V N P + K +SY+K +V S+ +G Sbjct: 101 LFIINLGKFEEDTTKNIISKAKAKNIPLVISNIAPLAASKLYNSYNKVAFVDPSSENAGS 160 Query: 141 IQGDLIAKHWAANQGW 156 IQG +IA W A + + Sbjct: 161 IQGKMIADLWNAKKTF 176 >UniRef50_C5ERQ0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERQ0_9FIRM Length = 346 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 14/142 (9%) Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKG-----IKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 VLL+G G + R L D G I E+ Q + A A M+ W++ Sbjct: 175 VLLRGIEGWSGSVMRGKGFHAALEDAGRDDITILDEKFQ----KFQKADAMTCMEDWIT- 229 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPVFGVDALPEALALVKSGALAGTV 277 +KI V++ ND MA+GA+EAL+ ++ + V+G+D L + +K G++ + Sbjct: 230 AYGDKINGVVSENDDMALGAIEALRGAGMTADAGHVLVYGIDGLYQGCKGIKEGSIQASA 289 Query: 278 LNDANNQAKATFDLAKNLADGK 299 D+N+ A+A + + L G+ Sbjct: 290 YQDSNDYAEAALERIQKLVSGE 311 >UniRef50_A6TAQ0 Putative uncharacterized protein n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TAQ0_KLEP7 Length = 169 Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 12/134 (8%) Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 +Q A + ++ D M W N I++V ANND MA+GA AL+ K + + G+ Sbjct: 46 VQKQPANYSRSEGMDLMQNWTG--NGEAIDIVAANNDEMAIGAAMALEKSQKKLL-IGGI 102 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY 318 DA P+ L + S + TV DA Q K +A L G+ K+++ V +P+ Sbjct: 103 DATPDGLKALASDKIQVTVFQDAVGQGKTALAVALKLIKGE--------KVESH-VWIPF 153 Query: 319 VGVDKDNLAEFSKK 332 V K+N+ + +K Sbjct: 154 ELVTKENMQTYVEK 167 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 47/278 (16%) Query: 10 AVMASMLFGAAAHAADTR-----IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 A + +++ GA A +GV++ D F + + ++++A A + + ++ Sbjct: 14 AALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEA-AKQKLTVRLDAG 72 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D ++Q Q++ + V A+ + D G I +A ++PV + A+ S Sbjct: 73 EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAKEGAVVS 132 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV-------LLKGEPGHPD 177 + + +D+ G + G+ AK LN GQ+ + +++ G Sbjct: 133 H-----IASDNVAGGRLAGEYAAKR--------LNGRGQVAIIDQPYIQSVIERVRGFE- 178 Query: 178 AEARTTY----VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 EA Y V+ L G++ L+ A D Q++ K+DA V A Sbjct: 179 -EALKPYPNIRVVARLTGDGVRDRSLK---AAEDLLQSQRKLDA------------VFAV 222 Query: 234 NDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSG 271 ND A G V A++A + I V G DA EA L+ G Sbjct: 223 NDESAFGVVSAIEAAGRKGIFVMGYDASEEARKLIAGG 260 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 121/300 (40%), Gaps = 25/300 (8%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 G ++Y D F + K + D +++ +D +ND ++ L+ GV AL Sbjct: 51 FGWSVYTRDQTFFQQLEKGV-VDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVDALI 109 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 + P A G ++ A +++PV+ + DS DK + +D K G + G A Sbjct: 110 VCPCKPEAMGNIVTLAHQKDIPVIITDIGDG----DS-DKDAIIISDMKAGGQMAGVYTA 164 Query: 148 KHWAANQGWDLNKDGQI---QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 +L K+ I + ++K E A+ R +E+ G + + + Sbjct: 165 ---------ELLKEKSITSGEVAIIKCEESAVYAQRRNEGYKEEIEKAGFTVAKELVANS 215 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 264 + K D S P+ I V A ND MA GA AL+ K+ + V G + A Sbjct: 216 KQEEGYTVMK-DILASNPD---IVAVFAANDPMAAGAASALQEAGKTDVIVTGFNGDDIA 271 Query: 265 LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 L + G + GTV D +LAK +GK D D K V VP + KD Sbjct: 272 LEYIADGKMMGTVAQDVLGIGAKGVELAKLAVEGK---DIPYDNADKKEVYVPVSFIGKD 328 >UniRef50_B0PDL3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL3_9FIRM Length = 373 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 76/317 (23%), Positives = 138/317 (43%), Gaps = 41/317 (12%) Query: 27 RIGVTI-------YKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 +IGV+ +K+D M +KA E A ++ + D +KQ +Q++ L+ Sbjct: 67 KIGVSFASEAQYRFKFDKQIME--QKAEELGAD------IIFQYANYDATKQANQVENLI 118 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 ++G+ L +N+V ++EK R Q +PV+ F+ +D V D+ + G Sbjct: 119 SQGIDVLVLNVVSGNMV-NLVEKVRSQGIPVITFDNTVEGAQVD-----LNVDRDNVKVG 172 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART---TYVIKELNDKGIKT 196 +Q + ++ G VL+KG+PG A+ + V E + I Sbjct: 173 RLQLEAALEYMGPEGG---------NVVLVKGDPGSAVAQRISQGYEAVAAEHPELNIVA 223 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPV 255 +Q W +A ++ LS N + I+ +A+ D++A+G V A+KA + Sbjct: 224 DQFH---EAWSPDKALKTVENALSA-NNDDIQAFVASADSVALGIVPAIKAAKLDGKAFL 279 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI---DNK 312 G+D A L+ G + ++ D + + T + A L G+ +I D Sbjct: 280 CGMDVEISAAKLINEGVMTMSIWTDIVSGDQRTIEAAVKLGKGEEITPDEIQQIGGFDIP 339 Query: 313 VVRVPYVGVDKDNLAEF 329 V+ V + V KDNL ++ Sbjct: 340 VLLVDVMPVTKDNLRQW 356 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 15/255 (5%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 ++TRIG+T+ N + A + + D Q D + Q DQI + ++ + Sbjct: 57 SETRIGITVLYPGSNSYQAMYAETAAAYAAELGIMATVMDPQGDPAIQFDQIQDMASQNM 116 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 A+ + A I A +P++ S + + Y +G + Sbjct: 117 DAIVVWPTSQNALIPAIRDASRSGIPII-----TSNSPIGEAGRRYILGHTGPDDC---- 167 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 +A+ A G + +G I V+++G PG+ + R + +L D L T Sbjct: 168 -ALAEQAAEMLGSAIGGEGNI--VVVEGTPGYSVSILRGNCFLDKLADDFPDVNVLDSQT 224 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS--IPVFGVDAL 261 A W+ +A+ M+ +L+ ++I+ V A +D MA+G V AL+A +S+ + + + Sbjct: 225 AEWNREKAQTVMETFLT-RFGDQIDGVYAFDDGMALGVVSALQAAGRSAGDVKIVSCNQF 283 Query: 262 PEALALVKSGALAGT 276 E +K G ++G+ Sbjct: 284 GEGWDAMKEGWISGS 298 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 73/294 (24%), Positives = 122/294 (41%), Gaps = 43/294 (14%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQL 59 MNK + S + ++ +A AA V + + F ++K IE +AK V + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAA-AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALA------INLVDPAAAGTVIEKARGQNVPVVFF 113 + S+ D Q + L K K +A +NLV P A +A + + +V Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVA------RAWKKGIYLVNL 113 Query: 114 NKEPSRKALDSYDKA-----YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 +++ +D+ KA +V TD+ G I A G + + Sbjct: 114 DEKID---MDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGG---------EVAI 161 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL---DTAMWDTAQAKD-KMDAWLSGPNA 224 ++G+ G+ EAR + K Q++L A WD +A D + PN Sbjct: 162 IEGKAGNASGEARRNGATEAFK----KASQIKLVASQPADWDRIKALDVATNVLQRNPN- 216 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTV 277 I+ + ND MAMG +A+ K+ + V G D +PEA +V++G + TV Sbjct: 217 --IKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATV 268 >UniRef50_D1VIA6 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Frankia sp. EuI1c RepID=D1VIA6_9ACTO Length = 364 Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 94/206 (45%), Gaps = 25/206 (12%) Query: 101 EKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 160 E R +VPVVF + +P R D A +VG ++ G D +A L + Sbjct: 153 EFCRNASVPVVFADVDPFRNESDYPPNAAFVGYRPEQIGERAADFVADQ--------LRR 204 Query: 161 DGQIQFVLL----KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 +G+ V+L +G+ G R ++ + D+ + E + + + +A+D Sbjct: 205 EGRANPVVLVIAGRGQTG------RQRRFVEVMRDRCPQAEIVLDEEGGFVRRRARDIAR 258 Query: 217 AWLS--GPNANKIEVVIANNDAMAMGAVEALK---AHNKSSIPVFGVDALPEALALVKSG 271 L+ G ++++ +D MA+GAV+A++ + ++ V GVD E +ALV SG Sbjct: 259 RKLTSLGQQGRSVDMIFCTSDEMALGAVDAVQMFASGGGAAAQVIGVDGTSEVVALVDSG 318 Query: 272 A--LAGTVLNDANNQAKATFDLAKNL 295 L TV+ D A+ DL + + Sbjct: 319 VSPLCATVVQDHARLAEHAVDLMERM 344 >UniRef50_A9B1C5 Solute-binding protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1C5_HERA2 Length = 358 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 18/270 (6%) Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 D Q+L ++QN+ S Q Q + + G + L ++ VD A T+ + A Q++PVV ++ Sbjct: 58 DCQVLYYNAQNNPSLQQQQAEEAIKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYD- 116 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 R L+S Y+ D+++ G +Q + + AA +G K +LL G Sbjct: 117 ---RLILNSPGVTAYISFDNQKIGELQAESLIAGLAA-RGLSNPK-----ILLLHGSLSD 167 Query: 176 PDAEAR---TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 +A V L G T + DT W A+A+ ++ L+ ++I+ + A Sbjct: 168 NNASEYKRGAKKVFDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAA--GDQIDGIYA 225 Query: 233 NNDAMAMGAVEALKAHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 ND A GA+ A++A +P+ G DA A+ + +G TV QA+A + Sbjct: 226 ANDGTAGGALVAVQAAKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAKI 285 Query: 292 AKNLADGKGAADG--TNWKIDNKVVRVPYV 319 A L G+ N + N ++ VP + Sbjct: 286 AHALMVGQPIPTNLVNNRTVANGIMNVPAI 315 >UniRef50_A0JW81 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JW81_ARTS2 Length = 364 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 17/216 (7%) Query: 37 DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 96 D + ++V + +K ++LL D+ D +QN + L+ KGV + +N DP Sbjct: 66 DWWKTLVEGGQAEASKVGARLELL--DANGDTVRQNADVQTLITKGVDVVVMNPNDPIGV 123 Query: 97 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW 156 G ++ + +PVV N + + D YV D + +G + G++ A+ G Sbjct: 124 GPSVQALKDAGIPVVTVNSSLDKSLVP--DMFCYVAEDQEHTGSLAGEVAAQKALEKYG- 180 Query: 157 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN-----DKGIKTEQLQLDTAMWDTAQA 211 GQI+ V + G PG ++ R + N G+ T +L+ W +A Sbjct: 181 ---DSGQIKLVGIGGFPGDVLSDLRFNGFMAGWNRVMEKHPGVTTVKLETKYGEWKPDKA 237 Query: 212 KDKM-DAWLSGPNANKIEVVIANNDAMAMGAVEALK 246 + D + P+ ++V+ + +D M G V+ L+ Sbjct: 238 LAPIRDVATANPD---LKVIYSMSDVMHGGIVQGLQ 270 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 124/274 (45%), Gaps = 22/274 (8%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG+ + + F V+ + Q A ++L + D+Q+D + Q ++ L+ K A+ Sbjct: 68 IGLAMNTQTNPFFVDVKDGV-QKAADEHGIELYITDAQDDPTIQMKDVENLITKKPDAII 126 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 I+ D A + IE +PV ++E + + S+ +G D+ +SG + G + Sbjct: 127 IDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEVISH-----IGYDAIKSGRMAGQYLV 181 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 G+ + V ++G G A+ R+ + + D E + A +D Sbjct: 182 DTLG----------GKGKIVEIQGIMGTNVAQNRSQGFNEVMKDNP-DMEIVACQVADFD 230 Query: 208 TAQAKDKMDAWLSGPNAN-KIEVVIANNDAMAMGAVEALKAHNKS-SIPVFGVDALPEAL 265 A+ M+ L AN +I+ + A ND M +GA+EA++A ++ I G DA+ + L Sbjct: 231 RAKGMSVMENIL---QANPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCDAIDDTL 287 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 +K+G + T+ KA + A + +GK Sbjct: 288 DAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGK 321 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 37/335 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQL 59 M K++L SA++ + GAA +GV++ + + + ++ E AK PDV++ Sbjct: 23 MIKQLLMGSAILV-LAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKV 81 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + DS D +KQ +QID +A GV + + DP A I++A QN +V + + Sbjct: 82 ITVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRA--QNAGIVVMATDVAA 139 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDG-QIQFVL--LKGEPGHP 176 D+ V T++ ++G I I A G + ++G QI ++ + G Sbjct: 140 VGADA-----TVQTNNVQAGEIACQYIVDKLGAAGGQIIIQNGPQISSIIDRVSGCRKSL 194 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 + T + + N K + E +++ M L+ KI+ V D Sbjct: 195 ANNPKITILSDDQNGKCSRDEGMKI-------------MQGHLT--RHRKIDAVFTVCDP 239 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSG--ALAGTVLNDANNQAKATFDLAKN 294 A G+ A + ++ + VD P+ K G + + D A+ + Sbjct: 240 QATGSDLAAQQFGRNEFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYE 299 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + +GK K DN ++ +P + KDN+A++ Sbjct: 300 IMNGK--------KPDNPMILMPSTLLTKDNVADY 326 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 127/284 (44%), Gaps = 42/284 (14%) Query: 7 TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN 66 L+A + SM G A A++ I + +D+ F + + A L+ + + Sbjct: 9 CLTAALISMA-GVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTLVAS-HDD 66 Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD 126 D +KQN I+ +A+ KA+ ++ A ++KA+ +P ++E + Sbjct: 67 DVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREIN-------- 118 Query: 127 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD-------GQIQFVLLKGEPGHPDAE 179 E+GI +++ ++ QG L + G+ +++ L G +A Sbjct: 119 ----------ETGIAVSQIVSNNY---QGAQLGAEKFVTLMGGKGKYIELLGRESDTNAH 165 Query: 180 ARTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL-SGPNANKIEVVIANND 235 R+ VI E +D + +Q TA W +A ++M++ L + P+ I VI+ ND Sbjct: 166 VRSQGYHDVIDEHSDMKMVAQQ----TANWSQTEAFNRMESILQANPD---ITGVISGND 218 Query: 236 AMAMGAVEALKAHNKSSIPVFGVDALPEAL-ALVKSGALAGTVL 278 MA+GA ALKA ++ + V G D +++ +G + TVL Sbjct: 219 TMALGAEAALKAAGRNDVVVVGFDGSDYVRDSIINNGNIKATVL 262 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 22/210 (10%) Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + + SKQ ++ ++ + V A+AI VD A I KA + VV + S + S Sbjct: 66 KGELSKQLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAKITS 125 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y V TD+ ++ ++QGD W A Q KDG + + G+ G + R Sbjct: 126 Y-----VATDNIKAAMVQGD-----WTAEQ----IKDGD-TVIYVTGDQGQSTGQERKKG 170 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN-DAMAMGAVE 243 + LN K + +++ T WD A++ ++ L AN VIA D A+GA Sbjct: 171 FLDGLNAKRKNVKVVEVATT-WDQTMAQNGVETAL---RANPTAKVIACAWDGGALGAKA 226 Query: 244 ALKAHNKSS--IPVFGVDALPEALALVKSG 271 AL A K + + + G D P L ++K G Sbjct: 227 ALMAAGKKAGDVKIAGFDGSPGGLDMMKQG 256 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 30/289 (10%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLM 61 K+ TL + +A + + V + + F +++ IE +AKA DV + Sbjct: 2 KRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIFA 61 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAI------NLVDPAAAGTVIEKARGQNVPVVFFNK 115 + S+ D Q + L+ K K +A NLV PAA KA + + +V ++ Sbjct: 62 SPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAA------KAYRKGIYLVNLDE 115 Query: 116 EPSRKALDSY--DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 + K L + ++ TD+ G I + G + +++G+ Sbjct: 116 KIDIKNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGG---------EVAIIEGKA 166 Query: 174 GHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLS-GPNANKIEVVIA 232 G+ EAR +E+ K + + A WD +A D LS PN V Sbjct: 167 GNASGEARRRGA-REVFVKSSSIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYVA-- 223 Query: 233 NNDAMAMGAVEA-LKAHNKSSIPVFGVDALPEALALVKSGALAGTVLND 280 ND MAMG +A + A + I V G D +PEA +V L T+ D Sbjct: 224 -NDTMAMGVAQAVINAGKQGKILVVGTDGVPEARKMVSERKLTATIAQD 271 >UniRef50_C3RC01 ABC-type sugar transport system n=5 Tax=Bacteroides RepID=C3RC01_9BACE Length = 282 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/277 (21%), Positives = 127/277 (45%), Gaps = 20/277 (7%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM--NDSQNDQSKQNDQIDVLLAKGVK 84 +IG+ + +F V+++ Q A P + L+ +Q + +Q D + L+ + V Sbjct: 6 KIGLVMKSLQADFFKVMKEGAIQYAAPLPFLDLVCVGTATQTEVKEQIDLMYSLIHQQVD 65 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGTDSKESGIIQG 143 A+ + +D A +A + +PV+ + + + L+ + +VG D+ + G Sbjct: 66 AIVLVPIDSKALVQPAVEAVRKGIPVINIDIQLDAQLLEQAGVEVAFVGPDNFAAAYEVG 125 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 L+ K N+D + +++G +A+ R IK + +KG++ + + Sbjct: 126 KLLGKKLR-------NED---KVAIIEGLAAADNAQQRKRGFIKAIEEKGLRL--VASEP 173 Query: 204 AMWDTAQAKDKMDA-WLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 A W+T +A + A W+ P+ ++ V +NDAMA+G ++ ++ K +PV G D Sbjct: 174 ADWETEKAAEVFQAMWMRYPD---LKAVYCSNDAMALGVLQQMQ-EKKCYLPVVGFDNDA 229 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 + +G L T ++ A + A ++ +G+ Sbjct: 230 VMKEFLSTGKLVATADIFSSQMAVRGIEFALDVLEGR 266 >UniRef50_A7NNR8 Anti-sigma-factor antagonist n=2 Tax=Roseiflexus RepID=A7NNR8_ROSCS Length = 445 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 3/88 (3%) Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEA 264 W ++ + WL I+ + A ND MA+GAV+ALKA N + + V G D LPEA Sbjct: 163 WTRESGRNLTEEWLRA--GQPIDAIFAANDPMALGAVDALKAQNLAGKVVVVGFDGLPEA 220 Query: 265 LALVKSGALAGTVLNDANNQAKATFDLA 292 L + SG + TV + + D+A Sbjct: 221 LRAIHSGHMLATVNQEPLRIGRQAVDVA 248 >UniRef50_C7MZ66 Monosaccharide-binding protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MZ66_SACVD Length = 376 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 99/225 (44%), Gaps = 30/225 (13%) Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 PD+Q ++Q D K + D ++A+GV+ L I ++ G V KA+ +P + ++ Sbjct: 81 PDIQ----NAQGDVQKFSTLADGMIAQGVQVLIIASINSEIGGAVAAKAKSAGIPTIDYD 136 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 R L + YYV D+ G +QG+ +A+ G Q + ++G P Sbjct: 137 ----RLNLGGSSE-YYVSFDNVRVGELQGEGLAEALDGKSG--------AQVIEIEGAPT 183 Query: 175 HPDA---EARTTYVIKELNDKGIKTEQLQLDTAM----WDTAQAKDKMDAWLSGPNANKI 227 +A V++ L D G +L+L + W+ + + L+ N ++ Sbjct: 184 DHNATLFHEGQRNVLQPLYDSG----ELELVRSQPIDDWNNQEGGRVFEQILT-SNGGEV 238 Query: 228 EVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSG 271 + V+A ND +A + LK + +PV G DA E L + G Sbjct: 239 DGVVAANDGLASAVITVLKKYGLNGKVPVTGQDATAEGLRAILRG 283 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 24/201 (11%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 + + +S +D +KQ + L+ K V + I P A +E+A + VV F+ Sbjct: 85 EYYITNSNDDINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFD--- 141 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +D+ ++ VG D E G + D + K DG+ + V+L G G + Sbjct: 142 --NVVDTDEQVATVGIDQTEFGRVCADWLVKK----------LDGKGKIVVLNGIAGTAN 189 Query: 178 AEAR---TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 R V K+ D E L A WD AQ K M++ LS +I+ V + Sbjct: 190 DTMRWNGAEEVFKQYPD----IEILGSANASWDYAQGKAAMESMLSA--YPEIDGVWSQG 243 Query: 235 DAMAMGAVEALKAHNKSSIPV 255 AM GA++A A + +P+ Sbjct: 244 GAMTQGAIDAFIAAGRKLVPM 264 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/266 (21%), Positives = 115/266 (43%), Gaps = 21/266 (7%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 +G T+ + +F + + + K +++ ++ D +D + Q +QI+ + +GV A+ Sbjct: 64 VGATLSDFTISFQAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFITQGVDAIL 123 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 IN V A + ++KA +PV N R D +Y++G + SG Sbjct: 124 INAVSDAVEPS-LKKAMEAGIPVFAVN----RSITDENAYSYFIGANDTLSG-------- 170 Query: 148 KHWAANQGWDLNKDGQI---QFVLLKGEPGHPDAEARTTYVIKELNDKG--IKTEQLQLD 202 AN D+ + Q+ + ++G G R +++KG + L+ Sbjct: 171 -EQMANCLLDMIEKDQMDSCNILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERI 229 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI--PVFGVDA 260 D + L+ A +I+ ++ A+GA++A+++ ++ + + G+D Sbjct: 230 PCKHDKETVISSIQNMLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDM 289 Query: 261 LPEALALVKSGALAGTVLNDANNQAK 286 E +K+G + GTVL D Q + Sbjct: 290 PTEVWDAIKAGKIYGTVLQDPAEQCE 315 >UniRef50_A8L0L2 Solute-binding protein n=5 Tax=Bacteria RepID=A8L0L2_FRASN Length = 385 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 15/211 (7%) Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 AK PD ++L +++ D + Q +Q + + G K L ++ VD AA + AR + V V Sbjct: 88 AKICPDCKVLYSNADQDSAAQQNQAEQAMTNGAKVLVLDPVDGEAAAVIARNARDRGVRV 147 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 V +++ + +D+ Y+ D+++ G +QG + ++ G + +++ Sbjct: 148 VSYDRLIQKAPVDA-----YISFDNEKVGQLQGQALLDAIG-------DRAGAGKVIMIN 195 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 230 G P+A+ + L +G T T W A +MD ++ I V Sbjct: 196 GSQDDPNAQQFKDGALSVL--EGKVTIGFDTFTPDWSPDTAGREMDQAITTVGRENIVGV 253 Query: 231 IANNDAMAMGAVEALKAHNKSSI-PVFGVDA 260 A ND MA V AL+ N + + PV G DA Sbjct: 254 YAANDGMAGAVVAALRRANVNPLPPVTGQDA 284 >UniRef50_B3DR21 ABC-type xylose transport system periplasmic component n=8 Tax=Bifidobacteriaceae RepID=B3DR21_BIFLD Length = 385 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 42/302 (13%) Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +++++ + + ++QN I+ ++ K + + D A G +EKAR V+ ++ Sbjct: 73 KVILSFADDKPAQQNADIENMVNNDAKIVVVASKDGTAVGPAVEKARDAGAKVIAYD--- 129 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 R +++ YY ++ G+++ + G G L G P D Sbjct: 130 -RLIMNTDAVDYYATFQLEQVGVLEATWLIDQLKLKDG----ATGPFNIELFTGSP--DD 182 Query: 178 AEARTTY-----VIKELNDKGIKTEQLQ-----------------LDTAMWDTAQAKDKM 215 A+ + +++ +KG+ Q + W T QA+ M Sbjct: 183 NNAKYFFKGAWDLLQPYFEKGVLVSPSQHGQGGVTKDFTVEDWQKISVMSWKTEQAQKDM 242 Query: 216 DAWLSGPNAN--KIEVVIANNDAMAMGAVEALKAHNKSSIP-------VFGVDALPEALA 266 ++ L A+ K++ V+ D +A G + A+++ P + G DA+ A+A Sbjct: 243 ESILDSTYAHGEKLDAVLTPYDGIAQGVINAIESKRPDMKPGTDSWPYITGQDAMEIAVA 302 Query: 267 LVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + TV D N A A +D+ +A+GK + G N K +N + VP +D N+ Sbjct: 303 NIAKDKQGETVFKDVNKLADAVYDMVVEIAEGKEVS-GLNGKFNNNNIDVPSKLLDPQNI 361 Query: 327 AE 328 + Sbjct: 362 TK 363 >UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA Length = 332 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 3/127 (2%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 D RIGV +Y F + VR+ ++ A + ++QLL +++ D S+++ +DV+ + V Sbjct: 35 DGRIGV-VYMDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVDVVSSADV 93 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 AL ++ V A+ + A +PV+ +N +A Y +Y +G D E G + G Sbjct: 94 DALVLSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILG-DPHEFGRLLG 152 Query: 144 DLIAKHW 150 D A H+ Sbjct: 153 DAAADHF 159 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 70/265 (26%), Positives = 116/265 (43%), Gaps = 24/265 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +L L + +L + IGV+ DD + + I ++A V++ Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + ++++ Q + I+ + + V L + + AA V+EKA G +PVV + RK Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVID----RK 115 Query: 121 AL-DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 L D Y +VG D+ E G G I G+ + + + G G A Sbjct: 116 ILSDRY--TAFVGADNCEIGKDVGQYIVNRLG----------GKGKILEITGLEGSTPAM 163 Query: 180 ARTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + L + GI+ +D A W + A +KMD+ L + I +V A ND MA Sbjct: 164 ERHRGLADALKAEPGIEITA-SVDGA-WLQSVAGEKMDSILQ--DNKGINLVFAQNDRMA 219 Query: 239 MGA-VEALKAHNKSSIPVFGVDALP 262 +GA + A + + + G+DALP Sbjct: 220 VGAYLSARQRQLEKEMLFVGIDALP 244 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Ta... 345 1e-93 UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein p... 305 2e-81 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 302 1e-80 UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=... 300 4e-80 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 289 1e-76 UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel... 288 2e-76 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 286 1e-75 UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=... 284 2e-75 UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostri... 283 5e-75 UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm... 279 1e-73 UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding... 277 3e-73 UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostri... 277 4e-73 UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=... 277 5e-73 UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clo... 277 5e-73 UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacter... 271 2e-71 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 268 2e-70 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 265 2e-69 UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=... 263 7e-69 UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=... 262 1e-68 UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clo... 261 2e-68 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 260 6e-68 UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clo... 259 1e-67 UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=... 256 7e-67 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 256 9e-67 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 255 1e-66 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 255 2e-66 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 255 2e-66 UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clo... 254 3e-66 UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic g... 254 4e-66 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 254 4e-66 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 252 1e-65 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 250 4e-65 UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=... 250 5e-65 UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=... 250 5e-65 UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=... 248 2e-64 UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=... 248 2e-64 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 247 3e-64 UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotro... 247 3e-64 UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachy... 247 4e-64 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 245 1e-63 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 245 1e-63 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 245 2e-63 UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcri... 244 4e-63 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 243 5e-63 UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=... 243 6e-63 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 243 6e-63 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 242 1e-62 UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=... 241 3e-62 UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette... 239 2e-61 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 237 3e-61 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 237 5e-61 UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostri... 236 9e-61 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 236 1e-60 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 235 1e-60 UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=... 234 3e-60 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 234 5e-60 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 232 1e-59 UniRef50_B1QV54 ABC-type sugar transport system, periplasmic com... 232 2e-59 UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic com... 231 2e-59 UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=... 231 3e-59 UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clo... 231 3e-59 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 231 3e-59 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 229 8e-59 UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=... 229 1e-58 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 229 1e-58 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 229 2e-58 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 225 1e-57 UniRef50_C5RHD6 D-galactose-binding periplasmic protein n=1 Tax=... 225 2e-57 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 224 4e-57 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 223 6e-57 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 223 8e-57 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 222 1e-56 UniRef50_A6M0H3 D-galactose-binding periplasmic protein n=2 Tax=... 221 3e-56 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 220 4e-56 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 220 4e-56 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 220 5e-56 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 219 8e-56 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 219 1e-55 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 219 2e-55 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 217 3e-55 UniRef50_C0BEZ2 Putative uncharacterized protein n=1 Tax=Coproco... 217 4e-55 UniRef50_A6LWC0 D-galactose-binding protein n=7 Tax=Clostridium ... 217 5e-55 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 217 6e-55 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 216 1e-54 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 216 1e-54 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 216 1e-54 UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic com... 215 1e-54 UniRef50_C5RNR8 Putative galactoside ABC transporter n=1 Tax=Clo... 214 4e-54 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 213 6e-54 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 213 6e-54 UniRef50_A9KK36 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 212 1e-53 UniRef50_C5RJJ5 D-galactose-binding periplasmic protein n=3 Tax=... 212 1e-53 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 211 2e-53 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 211 3e-53 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 211 4e-53 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 210 5e-53 UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=... 210 6e-53 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 209 9e-53 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 209 1e-52 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 209 1e-52 UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic sol... 209 1e-52 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 208 3e-52 UniRef50_C5RHA5 D-galactose-binding periplasmic protein n=2 Tax=... 208 3e-52 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 207 4e-52 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 207 6e-52 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 207 6e-52 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 207 6e-52 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 205 1e-51 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 205 1e-51 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 205 2e-51 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 203 8e-51 UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional... 203 8e-51 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 203 9e-51 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 202 2e-50 UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobact... 200 5e-50 UniRef50_C0D489 Putative uncharacterized protein n=1 Tax=Clostri... 200 7e-50 UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verruco... 199 1e-49 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 198 1e-49 UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE... 198 2e-49 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 198 2e-49 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 198 3e-49 UniRef50_A6BKJ6 Putative uncharacterized protein n=3 Tax=Firmicu... 197 6e-49 UniRef50_C9Y333 D-xylose-binding periplasmic protein n=20 Tax=Pr... 196 8e-49 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 195 1e-48 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 195 1e-48 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 195 1e-48 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 195 2e-48 UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 T... 195 2e-48 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 194 3e-48 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 194 3e-48 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 194 3e-48 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 194 4e-48 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 193 5e-48 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 193 5e-48 UniRef50_C5RPN7 D-galactose-binding protein n=1 Tax=Clostridium ... 193 6e-48 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 193 7e-48 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 193 9e-48 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 193 9e-48 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 193 9e-48 UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional... 192 1e-47 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 192 1e-47 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 192 1e-47 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 192 1e-47 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 192 2e-47 UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=B... 192 2e-47 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 192 2e-47 UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding... 192 2e-47 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 191 3e-47 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 190 4e-47 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 190 6e-47 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 190 7e-47 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 190 8e-47 UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminoc... 190 9e-47 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 189 9e-47 UniRef50_B1VWK1 Putative ABC transporter solute-binding protein ... 189 1e-46 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 189 1e-46 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 189 1e-46 UniRef50_C4GL06 Putative uncharacterized protein n=1 Tax=Kingell... 189 1e-46 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 189 1e-46 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 189 1e-46 UniRef50_C7IGF5 ABC-type sugar transport system periplasmic comp... 189 1e-46 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 189 1e-46 UniRef50_C5RF54 D-galactose-binding periplasmic protein n=1 Tax=... 188 2e-46 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 188 2e-46 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 188 2e-46 UniRef50_C5RMK4 D-galactose-binding periplasmic protein n=2 Tax=... 188 2e-46 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 188 3e-46 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 187 3e-46 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 187 4e-46 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 187 4e-46 UniRef50_C7Q046 Solute-binding protein n=4 Tax=Actinomycetales R... 187 5e-46 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 187 6e-46 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 187 7e-46 UniRef50_A6TKU8 ABC-type sugar transport system periplasmic comp... 186 8e-46 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 186 9e-46 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 186 1e-45 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 185 2e-45 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 185 2e-45 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 185 2e-45 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 185 2e-45 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 185 3e-45 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 184 3e-45 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 184 3e-45 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 184 4e-45 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 184 4e-45 UniRef50_A9KQP6 Putative solute-binding component of ABC transpo... 184 4e-45 UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional... 183 5e-45 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 183 5e-45 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 183 8e-45 UniRef50_Q11DN9 D-xylose ABC transporter, periplasmic substrate-... 183 1e-44 UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional... 182 1e-44 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 182 2e-44 UniRef50_Q47NL4 Solute-binding protein n=26 Tax=Actinomycetales ... 182 2e-44 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 181 3e-44 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 181 3e-44 UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkh... 181 3e-44 UniRef50_C6J071 ABC-type ribose transport system n=7 Tax=Bacteri... 181 3e-44 UniRef50_B0PGT6 Putative uncharacterized protein n=3 Tax=Clostri... 181 4e-44 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 180 5e-44 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 180 5e-44 UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidi... 180 5e-44 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 180 7e-44 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 180 8e-44 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 180 8e-44 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 179 1e-43 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 179 1e-43 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 178 3e-43 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 178 3e-43 UniRef50_A6X2R7 Periplasmic binding protein/LacI transcriptional... 177 4e-43 UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0... 177 4e-43 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 177 4e-43 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 177 4e-43 UniRef50_B9MLQ1 Monosaccharide-transporting ATPase n=1 Tax=Anaer... 177 4e-43 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 177 4e-43 UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding... 177 5e-43 UniRef50_Q8GBR5 Putative mglB homolog n=1 Tax=Treponema maltophi... 177 5e-43 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 177 6e-43 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 177 7e-43 UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate bin... 177 8e-43 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 176 9e-43 UniRef50_A9B1C5 Solute-binding protein n=1 Tax=Herpetosiphon aur... 176 1e-42 UniRef50_Q2CJV7 Putative rhizopine uptake ABC transporter peripl... 176 1e-42 UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran... 175 2e-42 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 175 2e-42 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 175 3e-42 Sequences not found previously or not previously below threshold: UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 205 2e-51 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 198 3e-49 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 195 2e-48 UniRef50_A6TRZ6 Monosaccharide-transporting ATPase n=1 Tax=Alkal... 194 3e-48 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 189 1e-46 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 188 3e-46 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 186 8e-46 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 186 1e-45 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 184 4e-45 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 184 4e-45 UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional... 183 8e-45 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 182 2e-44 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 180 5e-44 UniRef50_D2B5R3 Putative sugar ABC transporter, substrate-bindin... 180 6e-44 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 177 4e-43 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 177 5e-43 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 176 1e-42 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 176 1e-42 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 175 2e-42 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 175 2e-42 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 175 2e-42 >UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Tax=Bacteria RepID=DGAL_HAEIN Length = 331 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 223/331 (67%), Positives = 266/331 (80%), Gaps = 3/331 (0%) Query: 3 KKVLTLSAVMASMLFGAAA--HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 KK LS V ++ G+A+ AAD RIGVTIYKYDDNFMS++RK I+++AK ++LL Sbjct: 2 KKTAVLSTVAFAIALGSASASFAADNRIGVTIYKYDDNFMSLMRKEIDKEAKVVGGIKLL 61 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MNDSQN QS QNDQ+D+LL+KGVKALAINLVDPAAA T+I KA+ N+PVVFFNK+P K Sbjct: 62 MNDSQNAQSIQNDQVDILLSKGVKALAINLVDPAAAPTIIGKAKSDNIPVVFFNKDPGAK 121 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A+ SY++AYYVGTD KESG+IQGDLIAK W AN DLNKDG+IQFVLLKGEPGHPDAE Sbjct: 122 AIGSYEQAYYVGTDPKESGLIQGDLIAKQWKANPALDLNKDGKIQFVLLKGEPGHPDAEV 181 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT YVI+ELN KGI+TEQL +DT MWD A AKDK+DAWLS AN IEV+I+NND MA+G Sbjct: 182 RTKYVIEELNAKGIQTEQLFIDTGMWDAAMAKDKVDAWLSSSKANDIEVIISNNDGMALG 241 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+EA KAH K +P+FGVDALPEAL L+ G LAGTVLND+ NQ KA L+ NLA GK Sbjct: 242 ALEATKAHGK-KLPIFGVDALPEALQLISKGELAGTVLNDSVNQGKAVVQLSNNLAQGKS 300 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A +GT W++ ++VVR+PYVGVDKDNL +F K Sbjct: 301 ATEGTKWELKDRVVRIPYVGVDKDNLGDFLK 331 >UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein precursor n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF79F Length = 333 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 161/331 (48%), Positives = 225/331 (67%), Gaps = 3/331 (0%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + +L + A+ ++ RIGVTIYKYDDNFM ++RK + ++ ++ Sbjct: 4 MKRSLLNAFVYTLMLGANASYAQSEPRIGVTIYKYDDNFMMLMRKEMNKEMANFSHLKWF 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MND+QN Q KQ QI+ LL V LA+N+V + T++EKA+ NVPVVFFN+ + Sbjct: 64 MNDAQNSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEKAKLSNVPVVFFNRSSDNQ 123 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 AL+SYDKAY+V +D KE+G IQG+LIAK W +N +DLNKDG++QFVLLKGEP AE Sbjct: 124 ALESYDKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNKDGKLQFVLLKGEPSDVSAE- 182 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ V++ LN +G++ E++ DTA W A++KM+ WL A +IEVVI+NND MA+G Sbjct: 183 RSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWLVENRAAEIEVVISNNDEMAIG 242 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A++AL AH K +P+FG+DALPE LAL+K G +AGTVLND++ QAKA L NLA GK Sbjct: 243 ALDALNAHEKR-LPIFGIDALPETLALMKKGEIAGTVLNDSSAQAKAVVKLVSNLAQGKP 301 Query: 301 AADGTNWKI-DNKVVRVPYVGVDKDNLAEFS 330 A T W+ +K + +P++G+DK+NL +F Sbjct: 302 ALKDTQWESHSSKTIYLPHIGIDKENLGQFL 332 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 203/354 (57%), Gaps = 26/354 (7%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K T+ + +L + +IGV +YK+DD F+S V+ Sbjct: 1 MKKFRWTMILSIIMLLISCGNGGEKPAAGGEAPAGGEAKKEIKIGVALYKFDDTFISSVK 60 Query: 45 KAI-----EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 AI E+ + + + D Q Q+ QNDQ+D + +G +A+N+VD AA + Sbjct: 61 DAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDTFITQGYDVIAVNMVDRTAASVI 120 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 I+KA+ +PVVFFN+EP + + +D+ YYVG ++ESG IQG++ A ++ AN D N Sbjct: 121 IQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEESGTIQGEVAADYFKANPDADKN 180 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL 219 KDG+IQ+V+L+GEPGH DA RT Y IK L G + ++L DTA+W A ++KM AW+ Sbjct: 181 KDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQVDKLASDTALWQRANGQEKMAAWI 240 Query: 220 SGPNANKIEVVIANNDAMAMGAVEALKAHNK----SSIPVFGVDALPEALALVKSGALAG 275 S +KIE+V+ANND MA+GA+EALKA IPV GVDA A +K+G L G Sbjct: 241 SA-FGDKIELVLANNDDMALGAIEALKAAGYLSDGKFIPVIGVDATAPAKDSLKAGLLYG 299 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 TVLNDA Q K FD+A LA + A+ D K + +PY V K+N+ +F Sbjct: 300 TVLNDARGQGKGIFDIAYALAKKENPAEKVQGITDGKYLWIPYQKVTKENVDKF 353 >UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=Actinobacillus RepID=A3MZG8_ACTP2 Length = 323 Score = 300 bits (769), Expect = 4e-80, Method: Composition-based stats. Identities = 150/329 (45%), Positives = 229/329 (69%), Gaps = 6/329 (1%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L + ++ + ++ A DT +GV++Y+YDDNF+ ++ + P + LL Sbjct: 1 MKK--LAICSLAVGISLSSSVIAQDT-LGVSLYQYDDNFIRLMHDELISYTSENPSLSLL 57 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MND+QN Q QN+Q+ L+ V LA+NLVDP A TVI KA+ N+P++ FNK+P K Sbjct: 58 MNDAQNSQFVQNNQVQTLVNHKVDVLAVNLVDPNAWATVIGKAKDANLPIILFNKDPGAK 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A++SY K YYVG++ +E+G Q +IA HW +++ DLN DG++Q+ +LKGE GHPDAE Sbjct: 118 AINSYKKVYYVGSNPEEAGKAQAKMIANHWKSSEALDLNHDGKMQYAVLKGEVGHPDAEK 177 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT VI+EL +GIKTEQL L++A+W+ AK K++AWLS P N IEV+I+NND+MA+G Sbjct: 178 RTKAVIEELKTQGIKTEQLALESAVWNKEIAKAKVNAWLSTPQ-NNIEVIISNNDSMAIG 236 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+E + +K+ +P++GVDA PEAL L++ G LAGTV ND +Q++A D ++ LA G+ Sbjct: 237 ALEVVTEKDKA-LPIYGVDATPEALNLIRKGKLAGTVTNDWRSQSRAIIDFSRLLAKGEL 295 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + + WK++N+V+R+P + +D+ N+++F Sbjct: 296 P-ENSQWKLENRVLRIPAMSIDRSNISDF 323 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 121/346 (34%), Positives = 200/346 (57%), Gaps = 18/346 (5%) Query: 1 MNKKV--LTLSAVMASMLFGAAAHAAD-----TRIGVTIYKYDDNFMSVVRKAIE----- 48 M ++ + L+ +A+M+ G A +IGV IY+ DD F+S + ++E Sbjct: 4 MKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENAIKD 63 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 ++ K V + + D++N QS QNDQ+D + KG A+ +N+VD A +++KA+ + Sbjct: 64 KEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKEAGI 123 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQIQFV 167 P++FFN+EP + + +++ YYVGTD++E+G ++G ++A W + + D N DG++Q+V Sbjct: 124 PIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKLQYV 183 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +L+GE H D+ RT Y +K + +GI TE+L T W + A + M W+ G ++I Sbjct: 184 MLEGEQVHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWI-GQYGSQI 242 Query: 228 EVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 EVV++NND MAMGA+EAL + S V G+D + L + G + GTV+NDA Q Sbjct: 243 EVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEMEGTVMNDARGQ 302 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A++ +A A+GK ++ + VRVP+ V DN+ EF Sbjct: 303 AESILGIACACAEGKDPKQEVP-ELKGQYVRVPHSPVTADNVQEFI 347 >UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY38_9FIRM Length = 339 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 148/334 (44%), Positives = 211/334 (63%), Gaps = 18/334 (5%) Query: 3 KKVLTLSAVMASMLFGAA--------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 KKV+T A+ A + +IGV YKYDD +MS VR A+E+ AK Sbjct: 2 KKVITWCAIFCLFCLALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKEH 61 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 +V+L++NDSQNDQ+KQNDQIDV++ KGV L IN+VD AA V++KA+ N+P+V FN Sbjct: 62 SNVELIVNDSQNDQAKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLFN 121 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 +EP+ + +YDKA +VGT +KE+GIIQG +IA+ W +++ +D N +G++ +V+L G+P Sbjct: 122 REPATDVVKAYDKARFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDPE 181 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 +P+A ART Y + L + I+ +L A WD +AK DAWL+ +A+ I+V+I+NN Sbjct: 182 NPEAIARTKYAVDTLTEAKIEVNKLGDQVANWDPDKAKTATDAWLA-KDADNIDVIISNN 240 Query: 235 DAMAMGAVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 D+MA GA+ AL+ IPVFGVDA EA+ L+ G + GTV DA AKA Sbjct: 241 DSMASGAIAALQGAGFNTDAKADKKIPVFGVDATEEAVDLIARGIMTGTVKQDAEGMAKA 300 Query: 288 TFDLAKNLADGKGAADGTNWKIDNK--VVRVPYV 319 F L+ N GK DGT++K D+ VR+PY Sbjct: 301 VFALSYNAGQGKDFLDGTDYKYDDTQVAVRIPYQ 334 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 124/319 (38%), Positives = 182/319 (57%), Gaps = 9/319 (2%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-----APDVQLLMNDSQNDQSKQN 72 + RIGVT+Y+ D F+S++ + AKA + L + D +Q QN Sbjct: 35 SESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITLNILDGTGNQGTQN 94 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 +Q+D LA+G A+ +N VD AA +I+KAR ++PV+FFN+EP + + + YYVG Sbjct: 95 EQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVGEDMQRWQNVYYVG 154 Query: 133 TDSKESGIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 +D +E+G +QG ++ + N D N DG+IQ+V+L+GEPGH DA RT I L Sbjct: 155 SDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDATLRTESCIAALTS 214 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA-NKIEVVIANNDAMAMGAVEALKAHNK 250 GI E+L + A W AQA KM WL+ ++IEV+ NND MA+GA++A A Sbjct: 215 AGIDVEKLASEPANWQRAQASAKMAQWLADEELRDRIEVIFCNNDDMALGAIDAYHAAEI 274 Query: 251 SSIPV-FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI 309 S +PV G+DA P AL ++ G+LAGTV NDA QA+A FDLA L+ G + + Sbjct: 275 SELPVIVGIDATPPALMAIQDGSLAGTVRNDAQGQAQAIFDLAYALSTGANPQEAVPM-L 333 Query: 310 DNKVVRVPYVGVDKDNLAE 328 + + V P+ V N+ + Sbjct: 334 EGQYVWAPHSIVTIGNVMQ 352 >UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2X7_9CLOT Length = 348 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 146/345 (42%), Positives = 210/345 (60%), Gaps = 27/345 (7%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K L+ MA+++ A+ + ++GV +YK+DD ++S VR Sbjct: 1 MKKVKKLLTMTMATVMVTASLVGCGGNSGGSNGGDTSKGDKVKVGVCLYKFDDTYISTVR 60 Query: 45 KAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 +++E+ PD V+ D + DQ+ QND ID LL K V L +NLVD AA TVI+K Sbjct: 61 QSLEKIQSENPDKVEFTFYDGKGDQATQNDSIDTLLQKDVDLLLVNLVDTGAAPTVIDKI 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDG 162 + PVV FN+EPS ++ +YDKA +VGT++KE+G++QG++++K W ++ D N DG Sbjct: 121 KTAEKPVVLFNREPSADSIKAYDKAIFVGTNAKEAGVMQGEILSKVWEKDKAAIDKNGDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+V+LKGEP +P+A ART Y + LNDKG+KTE+L L WD A A++ +AW S Sbjct: 181 VLQYVMLKGEPDNPEAVARTQYSVSTLNDKGVKTEELALQVCNWDQALAQNATEAWFS-K 239 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGT 276 +KIE VIANND MA GA+ AL+A ++ IPV GVDA A L+ G + G+ Sbjct: 240 FGDKIEAVIANNDGMAQGAIAALQAQGYNNGDAAKTIPVVGVDATAAAQDLIGKGFMLGS 299 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYV 319 VL DA AKA ++ NLA GK A +GT++K D+ VR+PY Sbjct: 300 VLQDAEGMAKALYETGMNLAGGKSAVEGTSYKFDDTGVAVRIPYQ 344 >UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5KK65_9FIRM Length = 343 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 122/346 (35%), Positives = 189/346 (54%), Gaps = 18/346 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRI--------GVTIYKYDDNFMSVV----RKAIE 48 M KK L +A++ M+ +I GVT Y +D F+S + ++ + Sbjct: 1 MKKKKLLAAAIVLCMVIQLLCACGKQKISMSDKVYVGVTCYDQNDTFLSELLVCFKEELN 60 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 K + + + ++ Q QNDQ+ L+ G L +NLVD A +I+ A+ +V Sbjct: 61 HLNKNGVETTVTVKNAAGSQRTQNDQVKELINAGCNVLCVNLVDRADPSEIIDVAKEHDV 120 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 P++FFN+EP + + +D+ YYVG D+K+SG++QG+L + N D NKDG+IQ+V+ Sbjct: 121 PIIFFNREPVAEDMRQWDRLYYVGADAKQSGVLQGELAVEMIRQNSQIDHNKDGKIQYVV 180 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+GE GH DA RT + LN GI+ E+L A W+ AQA+++M+ L G NKIE Sbjct: 181 LEGEAGHQDAIIRTENAVDTLNKNGIELEKLSYQIANWNRAQAQNRMEQML-GQYKNKIE 239 Query: 229 VVIANNDAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 +V+ANND MA+GA++A K N + G+D L V+ ++AGTV ND QA Sbjct: 240 LVLANNDDMALGALDAYKNLNYTEALLPVFIGIDGTDMGLKAVEDSSMAGTVYNDKEGQA 299 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 +A L+ L GK A + + + +PY V K+N+ E+ K Sbjct: 300 RAIAKLSAALVIGKEAEEIKF--TNENYIYLPYSKVTKENVHEYLK 343 >UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein n=15 Tax=Firmicutes RepID=C6CXV0_PAESJ Length = 366 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 148/316 (46%), Positives = 201/316 (63%), Gaps = 9/316 (2%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 + A + +GV IYK+DD FM+ VR AIE A + ++ + DSQN Q QND++D+ Sbjct: 52 SPAVKKEPTVGVAIYKFDDTFMTGVRNAIE--AASQGVAKVDIVDSQNSQPTQNDKVDLF 109 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + K A+AIN VD AA +I+KA+ N PVVFFN+EP + ++ +D YYVG ++ES Sbjct: 110 ITKKYNAMAINAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAEES 169 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + G+LI +W A+ D NKDG++Q+++LKGEPGH DAE RT Y I+ + D GI E+ Sbjct: 170 GTMSGELIIDYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGIGVEK 229 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK----SSIP 254 L DTAMWD +A+DKM +LS +KIE V+ANND MA+GA+EALKA +P Sbjct: 230 LAEDTAMWDRVKAQDKMATFLSAH-GDKIEAVLANNDDMALGAIEALKAAGYFKDGKFMP 288 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNW--KIDNK 312 V GVDA AL + G L GTVLNDA NQ AT LA LA+G+ + D+K Sbjct: 289 VVGVDATAAALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFDITDSK 348 Query: 313 VVRVPYVGVDKDNLAE 328 V VPY + KDN+++ Sbjct: 349 YVWVPYKKITKDNMSD 364 >UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1Q8B1_9SPIR Length = 344 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 139/338 (41%), Positives = 207/338 (61%), Gaps = 18/338 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAA--HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K+VL L ++AS + + + + IG+TIY+ DD F + ++ IE+ + + Sbjct: 1 MEKRVLLLLIILASFIVISCSDKKTNNNFIGITIYRTDDPFANSLKNNIEKFI--SGRAK 58 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 ++NDSQN+Q+ QN QID ++KG K L INLVD AA +++KA+ + P++ FNK P Sbjct: 59 YIVNDSQNNQTTQNSQIDNYISKGAKVLVINLVDTQAAQDIVDKAKNSDTPIILFNKSPD 118 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++SYDK +YVGT S+E+ IQG +IA W AN WD N DG+IQ V+L+GEPGH D Sbjct: 119 PSVMNSYDKVWYVGTLSEEAVNIQGKIIADSWKANPSWDKNGDGKIQCVILEGEPGHADT 178 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN-----KIEVVIAN 233 + RT +I + + GI+ E L TAMW+ +AK+ +D W+S N N KIE + +N Sbjct: 179 KIRTENLISFIENSGIELEILDKKTAMWNRDRAKNIVDFWMSNHNDNEDSDTKIEYIFSN 238 Query: 234 NDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 ND MA+GA+++++ + IP+ G+DA+ E + +++G + GTVLND+ QAKA Sbjct: 239 NDEMALGALKSVQGFGYNKGESNKFIPIVGIDAINETIKEIENGNIVGTVLNDSLTQAKA 298 Query: 288 TFDLAKNLADGK--GAADGTNWKIDN-KVVRVPYVGVD 322 DLA NL + GT W +DN K VRV Y + Sbjct: 299 ISDLAVNLFKNETLNPILGTIWTLDNTKSVRVHYKPIT 336 >UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A6BKA3_9FIRM Length = 355 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 193/348 (55%), Gaps = 20/348 (5%) Query: 1 MNKK------VLTLSAVMASMLFGAAAHAAD----TRIGVTIYKYDDNFMSVVRKAIEQD 50 M+KK ++ + ++A ++ G + RIGV Y DD F++ + ++++ Sbjct: 11 MSKKNRKRRSMIAVILLIAFLITGCEDKSVKRDHIIRIGVVTYTQDDPFINAMTDQLKEN 70 Query: 51 AKAAP----DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 K + + + ++Q QN+ ++ ++ G L +NLVD A +I A+ + Sbjct: 71 LKKMETDLMKIITTVKNGDDNQQDQNEIVEEMIDAGCDVLCVNLVDRTAPSRIIRMAKQE 130 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 ++PV+FFN+EP R+ L ++K YY+G ++++SGI+QG+++A + + D N+DG+IQ+ Sbjct: 131 DIPVLFFNREPVREDLMQWEKLYYIGCNAEQSGIMQGEIVADYIKNHPEVDKNQDGKIQY 190 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 +LL+GE GH DA +RT Y +K L ++GI E+L A W+ QA+++M + ++ Sbjct: 191 ILLEGEAGHQDAISRTDYSVKTLLEQGIDLEKLSYQFADWNRGQAENRMSRLI-EQYGDE 249 Query: 227 IEVVIANNDAMAMGAVEALKAHN---KSSIPVFGVDALPEALALVKSGALAGTVLNDANN 283 IE+VI+NND MA+GAV A + ++ +FG+D L +AL +K+G + GTV ND + Sbjct: 250 IELVISNNDEMALGAVAAWQKAGYDCRNWPVIFGIDGLDDALEAIKTGKMKGTVYNDKED 309 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 QA L+ + GK + + Y VD N+ F K Sbjct: 310 QAMELAKLSVEIVCGKD--TNRKHLKEGRYYVSEYCRVDSSNVDHFLK 355 >UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=Clostridiales RepID=C7G6I7_9FIRM Length = 367 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 115/333 (34%), Positives = 180/333 (54%), Gaps = 15/333 (4%) Query: 10 AVMASMLFGAAAHAAD----TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-----VQLL 60 ++ S++ G D +IG+++Y D F+S + K A + + + Sbjct: 33 ILVMSVVIGGCGGREDAKKSIKIGISVYDQYDTFVSEMMKDFNDYATKKEEETGVAINID 92 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 ++ QS QN Q++ ++ +G + +NLVD +I+ A N+PV+FFN+E + Sbjct: 93 TYNASASQSTQNSQVENMITEGCDVICVNLVDRTDPTAIIDLAEKNNIPVIFFNRELVEE 152 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 L+ + + YYVG + ESGI+QG+L A+ + +Q D N DG Q+V+L+GE GH DA Sbjct: 153 DLERWTRLYYVGAQAFESGIMQGELAAEAFLTDQSLDKNGDGIFQYVVLEGEAGHQDAIV 212 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT Y + + D G++ E+L A W+ AQA+ KM +S + IE+VIANND MA+G Sbjct: 213 RTEYSVSTMIDSGVEVEKLGYAIANWNRAQAQTKMAQLMS-QFGDSIELVIANNDDMALG 271 Query: 241 AVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A++ALKA + V G+D L VK+ + GTV ND QA A +LA L+ Sbjct: 272 AIDALKASGLTKDEWPAVIGIDGTDVGLEAVKNKEMIGTVYNDKEGQADAMLNLAYELST 331 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G +D ID K +R+PY V D++ + Sbjct: 332 GSDLSDLN--LIDGKYIRLPYARVTCDDVDSYM 362 >UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT8_CLOCL Length = 353 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 148/307 (48%), Positives = 197/307 (64%), Gaps = 8/307 (2%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +IG IYKYDD F+S V +++E+ + L + DSQNDQS+Q QID ++ V+ Sbjct: 42 PKIGAVIYKYDDTFISYVSESMEET--SFGKAALNVQDSQNDQSRQFQQIDEMIDDKVRV 99 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 L +NLV+P AA T+I KA+ VPV+FFNKEP L SY A+YVG DS E+GI+QG + Sbjct: 100 LVVNLVEPTAAETIINKAKNAEVPVIFFNKEPEASVLKSYSNAWYVGADSSEAGILQGKM 159 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 IAK W N WD +KDG + +VLLKGEPGHPDAE R YVI E+ + GI+ +L AM Sbjct: 160 IAKLWRKNLQWDKDKDGILSYVLLKGEPGHPDAEIRAKYVIDEIKNSGIQVRELDSHYAM 219 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----IPVFGVDAL 261 WD +A+ KMD W++ N IE VI+NND MA+GA+ +L+ + S +PV GVDA+ Sbjct: 220 WDEVRARGKMDQWIA-QFGNNIEFVISNNDTMAIGAINSLEKNGYMSGDNFVPVVGVDAI 278 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI-DNKVVRVPYVG 320 EA+ + G + GTVLNDA Q A +LA N + G GT + + +K VRVPYV Sbjct: 279 QEAIQEITEGKMVGTVLNDAKKQGAAVINLAINASKGDDILKGTAFVMGSDKSVRVPYVA 338 Query: 321 VDKDNLA 327 + KDNL Sbjct: 339 ITKDNLD 345 >UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacteria RepID=C0QYC2_BRAHW Length = 350 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 164/346 (47%), Positives = 228/346 (65%), Gaps = 22/346 (6%) Query: 1 MNKKVLTLSAVMASMLF-----------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K + ++A+ + IGVTIY+YDDNFMS R+ IE Sbjct: 1 MKKSFIVMAALFIMSSLFVVSCGGGSSSSSTTTTDGPTIGVTIYRYDDNFMSFYRRNIE- 59 Query: 50 DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 + + L++NDSQN+Q++QNDQ+DV++ K KALAINLVDP AA T+I+KA+ +N+P Sbjct: 60 -TRISGKANLIINDSQNNQAQQNDQVDVMIQKDSKALAINLVDPQAAQTIIDKAKTKNIP 118 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 VVFFNK+PS +A+ SYDK +YVGT +ESG +QG ++ W AN WD N DG IQ+ LL Sbjct: 119 VVFFNKQPSAEAMASYDKTWYVGTTPEESGDMQGKIVVDTWKANPAWDKNGDGIIQYALL 178 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 KGEPGHPDAEART++V + + G+K E+L+ TAMWDTA+AKD +DAW+ +K+E Sbjct: 179 KGEPGHPDAEARTSHVTLYVTNNGLKVEKLEEQTAMWDTAKAKDIVDAWIQ-KYGDKLEY 237 Query: 230 VIANNDAMAMGAVEALKAHNKSS-------IPVFGVDALPEALALVKSGALAGTVLNDAN 282 + NNDAMA+GA++A++A + IP+ GVDA+P+ + +K G + G+VLND Sbjct: 238 IFCNNDAMALGALQAVQALGYNKEGDTTKFIPIVGVDAIPDMINEIKKGTVVGSVLNDPV 297 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDN-KVVRVPYVGVDKDNLA 327 Q++A D+ N+A GK DGT W +D K VRVPYV + KDN+ Sbjct: 298 GQSQALVDITLNVAAGKDPLDGTTWTLDEVKAVRVPYVPITKDNIN 343 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 126/348 (36%), Positives = 198/348 (56%), Gaps = 20/348 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA----------ADTRIGVTIYKYDDNFMSVVRKAIEQD 50 + K L+ V + + + + +IGVT+YK DD F+S + K IE Sbjct: 13 IKKLSGLLTVVSIFNVLSSCSANVKSANYSNDIKEIKIGVTLYKQDDAFISEISKNIEDI 72 Query: 51 AKAAPD-----VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 AK + + + + D++ + Q++Q+D +A+ + +N+VD AA +I+KA+ Sbjct: 73 AKEKENQGKYKIIVNVADAKGNLINQSNQVDKFVAQNYDVICVNMVDRTAASMIIDKAKS 132 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA-NQGWDLNKDGQI 164 N+P+VFFN+EP + ++ ++K YYVG D+++SG +Q ++I + N+ D N DG+I Sbjct: 133 ANIPIVFFNREPVEEDMERWNKLYYVGADAQQSGEMQANIIINAYKKDNKMVDKNGDGKI 192 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+L+GE GH D+ RT Y IK + GI+ E+L DTA W +AQA KM W+ Sbjct: 193 QYVMLEGEQGHQDSLIRTEYCIKTITQNGIELEKLADDTANWQSAQATTKMSQWIKN-FG 251 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDAN 282 +KIEVV +NND MA+GA+ A+ N V G+D LP+AL VK+G++ GT+LND+ Sbjct: 252 DKIEVVFSNNDEMALGAINAINDANIGGKKPLVVGIDGLPKALEAVKNGSMIGTILNDSK 311 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 QA A F+LA LA G + K +R P+ V DN+ + Sbjct: 312 KQANAIFNLAYTLAS-HGNVNSIEGLEKGKYIRTPHAEVTSDNVDLYI 358 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 165/332 (49%), Gaps = 26/332 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L +++V+ ML A+ A D +IGV++ +DDNF++++R++++ K +V Sbjct: 1 MKLKKLIVTSVLMCML-PASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQ 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D++ D ++Q QI+ +++GV A+ +N VD +I+ A +P+VF N+ P Sbjct: 60 FEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPE-- 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + YVG+DSK +G +Q + +AK +G+ ++L GE + Sbjct: 118 -VTLPAGMAYVGSDSKLAGKLQMEELAKLM----------NGKGNVMILMGELSNEATRD 166 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT V +E+ K + L TA W +A D W +I+ + +NND MA+G Sbjct: 167 RTRGV-EEVAAKYPGIKILDKQTAKWGRKEAVDITTDW--ALTGQQIDAIASNNDEMAIG 223 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ ALK KS + V GVD P+AL +K G LA +V DA Q + A L G+ Sbjct: 224 AILALKQAKKSGVLVAGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEK 283 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 V +PY + K N EF+ K Sbjct: 284 VESN---------VLIPYQLITKANYQEFADK 306 >UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C4ZBY5_EUBR3 Length = 338 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 14/338 (4%) Query: 5 VLTLSAVMASMLFGAAAHAADTR----IGVTIYKYDDNFMSVVRKAIEQDAK----AAPD 56 ++ L + + D + IGVT Y D F+ + + +++ D Sbjct: 1 MMILCFALILSFVSCSNTRVDEKKQIYIGVTCYDQKDTFIGELIETFKKECASLDTDKYD 60 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + + + D+ Q Q+DQ+ ++ G L INL D +I A +++P++FFN+E Sbjct: 61 ISMTIMDAAGSQRAQDDQVQEMIEDGCNVLCINLADRTDLSHIINAAMEKDIPIIFFNRE 120 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 P + L+ +DK YYVG +K+SG +QG+LIA + N G D N DG+IQ+V+L+GE GH Sbjct: 121 PVDEDLNRWDKLYYVGAKAKQSGQMQGELIADYIKNNPGVDKNGDGRIQYVILEGEMGHQ 180 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 DA RT V + + + G++ E+L A W+ AQA+++M + G N IE+VIANNDA Sbjct: 181 DAIVRTESVTESMKNNGLQIEKLSCQIANWNRAQAQNRMTQLI-GQYKNSIELVIANNDA 239 Query: 237 MAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 MA+GA++A + + FGVD + L V+ LA TV ND QA A LA Sbjct: 240 MALGAIDAYEKLGVTESNVPAFFGVDGTDDGLEAVQQSKLAATVYNDKEGQAMAMAQLAY 299 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A G + D K V +PY V DN+ EF K Sbjct: 300 LAATGGSMKNIKFE--DKKYVYLPYEKVTPDNVNEFVK 335 >UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C5EU51_9FIRM Length = 350 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 182/344 (52%), Gaps = 22/344 (6%) Query: 1 MNKKVLTLSAV--MASMLFGA----------AAHAADTRIGVTIYKYDDNFMSVVRKAIE 48 M + + L AV +L G RIGV +Y+ DD F+ +R +E Sbjct: 1 MKRNWIYLLAVCLGIGILIGFWQYRENEGQRQTKKNSIRIGVLLYRGDDTFIGTLRAGLE 60 Query: 49 QDAKAAP-----DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 AK V+L + DS+ Q+ QN Q++ L++ G AL IN VD ++A +I+KA Sbjct: 61 DKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVERLISLGCDALCINSVDRSSASIIIDKA 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDG 162 PVVFFN+EP + ++ ++K YYVG D+KES ++QGD + + ++ D N +G Sbjct: 121 MDAGTPVVFFNREPVEEDMNRWEKLYYVGADAKESAVLQGDALVDAYRKDSRTLDANGNG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 + +VLL+GE H D+ RT + I+ L D G+ E++ A WD +QA M+ WL Sbjct: 181 LVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVPLEKITGGIANWDRSQASALMEQWLKEY 240 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLND 280 +IE+V++NND MA+GA++A+ +SI V G+D P + ++ G L TV +D Sbjct: 241 PG-QIELVVSNNDDMALGAIDAMNRAGIGANSIKVVGIDGTPVGIKALEEGTLFATVESD 299 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 A+A FD+A +L+ + ++ K P + ++ Sbjct: 300 KERYAQAIFDIAWSLSLDQDPKSVVPL-VNGKYYWCPQRVLTQE 342 >UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1Q6_CLOB8 Length = 353 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 123/351 (35%), Positives = 207/351 (58%), Gaps = 27/351 (7%) Query: 2 NKKVLTLSAVMAS---MLFGAAAHAADTRIG----------VTIYKYDDNFMSVVRKAIE 48 +KK+L L +M +L + A+T++ V + +D + ++++++ E Sbjct: 4 SKKILVLFTIMVMIINLLLNSNKVVANTKLTATEGRPVRASVLLRTLEDPYTALLKQSFE 63 Query: 49 QDAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKG-VKALAINLVDPAAAGTVIEKARGQ 106 + K +++ D +NDQS QN ++ +L G + +NLVDP T++++ + + Sbjct: 64 EIQKNNQGNIEFTFYDCKNDQSLQNRNVNSILNAGNADIILLNLVDPTGVRTIVDRVKEK 123 Query: 107 NVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDGQI 164 N+P+ FN EP + + + SY KAY+VGT+ E+GI+QG+L++ W ++ D N D + Sbjct: 124 NIPLGLFNIEPLNMETVKSYSKAYFVGTNPAEAGILQGELLSSLWNKDRTIIDKNGDNIM 183 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+L G + +A RT Y + +ND GIKTE++ L W+ AKD MDA N Sbjct: 184 QYVMLMGPRNNLEAIGRTKYSVLSINDAGIKTEEIALRVCNWEENLAKDAMDALFLS-NG 242 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKS------SIPVFGVDALPEALALVKSGALAGTVL 278 NKIEV+I+NNDAMA+GA+EAL+ + + +IP+ GVD +P+A+ L+ G + G+V Sbjct: 243 NKIEVIISNNDAMAIGAIEALQKYGYNSGDKNRTIPIVGVDGIPKAIQLINQGIMTGSVP 302 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVG-VDKDNL 326 DA + A+AT+ + NL +G+ DGT++K D+ VR+PY G + DN+ Sbjct: 303 QDAASMAEATYLIGMNLVNGRPPLDGTSYKFDDTGVAVRIPYKGYISNDNI 353 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 159/330 (48%), Gaps = 37/330 (11%) Query: 14 SMLFGAAAH----------AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 +ML G + + IG + +DD ++S ++ +++ K DV+++ D Sbjct: 35 AMLVGCSGKQETAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVD 94 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 + ND SKQ Q++ + + V A+ + VD +A +++KA N+P+V N+ Sbjct: 95 AMNDASKQLSQVENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD-- 152 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YVG++S ++GI+Q + +AK +G+ + ++ G+ GH RT Sbjct: 153 --KATAYVGSESIKAGIMQMEEVAKLL----------NGKGKIAIMNGQMGHEAQIKRTE 200 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 K++ K + + TA WD A+ M+ WL KI+ V+ NND MA+GA+ Sbjct: 201 G-NKQVIKKYPDMKVVLEGTAEWDRAKGMSLMENWLQS--GKKIDAVVCNNDEMAIGAIM 257 Query: 244 ALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+ K + V GVDA P+AL VK G L TV +A Q + ++A A G+ Sbjct: 258 ALEDEGKLDDVIVAGVDATPDALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKV- 316 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 K +PY V KDN+ E+ KK Sbjct: 317 --------EKFNWIPYELVTKDNVEEYIKK 338 >UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LSD8_CLOB8 Length = 349 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 112/349 (32%), Positives = 193/349 (55%), Gaps = 27/349 (7%) Query: 1 MNKKVL---TLSAVMASMLFGA----------AAHAADTRIGVTIYKYDDNFMSVVRKAI 47 M KK+L +M+ MLF AA R+ V + + D+++S+VRK + Sbjct: 1 MFKKMLSIIMFLMIMSYMLFSFKEKATFASINAAEKRPIRVAVFLINFSDDYISLVRKDL 60 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV---DPAAAGTVIEKA 103 E + P V+ D++++Q+ QN+Q+D +L +GV + ++LV D V + Sbjct: 61 EDIQEENPGKVEFTFYDAKSNQAVQNEQLDNVLKEGVDLIIMHLVKNRDELTVKRVTNQI 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKDG 162 N+PV+FFN+EP + Y+K+ Y+G D+K GI++G+++A W N D N DG Sbjct: 121 AKDNIPVIFFNREPLLSEIKRYNKSLYIGLDAKSDGIMEGEILANEWNTNRDSIDKNHDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+VLL+GE + A RT Y + L++ G++T++L+ A W AK+ +++ L Sbjct: 181 IMQYVLLEGERNNLVAADRTKYSLLALSEAGVETQELERVFAYWSRELAKEAVES-LFLK 239 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNK------SSIPVFGVDALPEALALVKSGALAGT 276 KIE +IAN+D+MA+GA+EAL+++ +I V GV+ LPE+ L+ G + GT Sbjct: 240 TGPKIEAIIANDDSMALGAIEALQSYGYNLGDKEKNIAVVGVEGLPESQKLINEGLMLGT 299 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVDK 323 + D A+A + + N+ G+ +GT+++ D +R+P + K Sbjct: 300 IFQDPKAMAEALYTIGMNMVKGRDPIEGTDYQFDQTGVAIRIPNQIIYK 348 >UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=Clostridium botulinum RepID=B2TNA6_CLOBB Length = 352 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 122/344 (35%), Positives = 198/344 (57%), Gaps = 28/344 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT-------------RIGVTIYKYDDNFMSVVRKAI 47 M KK+L+++ ++ M+ + ++GV +YK++D ++S+++ ++ Sbjct: 1 MKKKLLSINMIIIVMILMFFGVNENIVANCSNFDSEKAAKVGVLLYKFNDEYISLLKNSL 60 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--AAGTVIEKAR 104 E+ K P+ V+ + D+ D+ KQN ++D LL + V L +NLVD + + V+++ + Sbjct: 61 EEIQKENPNKVEFIFLDAYGDEKKQNKELDKLLKEKVDLLLVNLVDTSEGSTQKVVDRIK 120 Query: 105 GQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDG 162 NVPV+FFN+EP S+ + SY+KA + + E+GI+QG +++ W N+ D NKD Sbjct: 121 ENNVPVIFFNREPISKIPIKSYEKAV-ILSRIPEAGILQGQIVSDLWNDNKKMIDKNKDN 179 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+V+L GE A +RT VIK + D GI+ ++L+ + WD AK + + L Sbjct: 180 IMQYVMLTGESSDLTAISRTKNVIKTIKDNGIEIQELEKKNSKWDRELAKQNIASLL-YQ 238 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGT 276 NKIEV+IANNDAMA+GA+EAL+ N ++ I V G+DA P+A L+ G +AGT Sbjct: 239 YGNKIEVIIANNDAMAIGAIEALQKQNYNNGDLNNTIIVVGIDATPKAKELINEGYMAGT 298 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 V D +A A + L NL GK + T +K D VR+PY Sbjct: 299 VFQDPKEEADALYTLGMNLISGKNPIENTQYKYDETGVTVRLPY 342 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 256 bits (654), Expect = 9e-67, Method: Composition-based stats. Identities = 130/344 (37%), Positives = 188/344 (54%), Gaps = 34/344 (9%) Query: 1 MNK-KVLTLSAVMASMLFGAAAHA----------ADTRIGVTIYKYDDNFMSVVRKAI-- 47 M K L L +++A LFG ++ IGV IYK+DDNFM++ R+ + Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 48 ---EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 E K +L + D + DQ+ Q +QI+ +A+G + N+VDP AAG++I A+ Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 105 GQNVPVVFFNKEPSRKALDSYD-KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ 163 + +PVVF N+EP + L+ + K YVG D+ +SG IQG +IA D++ DG Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQGYMIANL---ENKGDIDGDGS 177 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ-LQLDTAMWDTAQAKDKMDAWLSGP 222 + ++ L G+P + DA+ RT Y +K L +KG+KT Q A WDTA+ ++ L Sbjct: 178 VSYITLMGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANAL-EQ 236 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGTVLN 279 NK+EVV ANND MA+GAV A++A + I V GVDA+P+A+ L+K G L GTVLN Sbjct: 237 FGNKLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLN 296 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 D NQ+ D+A L GK + YVGV K Sbjct: 297 DHFNQSHTAVDVALELLQGKDVSA---------YYWHDYVGVTK 331 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 173/318 (54%), Gaps = 21/318 (6%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQLLMNDSQNDQSKQNDQIDV 77 + +D ++GV IY++ DNFM++ R +E +K + + D NDQ+ Q +QI+ Sbjct: 73 SGDFSDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIKIMDGANDQATQTNQIEN 132 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK----AYYVGT 133 + V L +N V+ ++A T+ +K + +P+V+ N+EP + +++ YVG Sbjct: 133 FITDKVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQDEEKRWEEKNWDVTYVGC 192 Query: 134 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG 193 D+++SG QG++IA D+N +G++ ++++KG+P + DA+ RT + +K L D G Sbjct: 193 DARQSGTFQGEIIAS--VGMDKLDMNGNGKVDYIMIKGDPENIDAQYRTEFSVKALQDAG 250 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK--- 250 ++ +L WD A A+ + L+ N IEVV NND+MA+GA++A++A + Sbjct: 251 MEVNKLDEQVGNWDQALAQSLVANALA-KNGKDIEVVFCNNDSMALGALQAIQAAGRTVG 309 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 I + GVDAL EA V +G GTV ND Q+ A D A N GKG + Sbjct: 310 KDIYLVGVDALEEACQNVLAGTQTGTVFNDFLTQSHAAGDAAINYLGGKG---------N 360 Query: 311 NKVVRVPYVGVDKDNLAE 328 + + YV V KDN + Sbjct: 361 DHYIGCDYVKVTKDNAQD 378 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 90/309 (29%), Positives = 155/309 (50%), Gaps = 25/309 (8%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 ++GV+I +DD F++ + +++ A+ D++L D++ D +KQ +Q++ + +G Sbjct: 36 GKKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQG 95 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 + + VD +AA + A +V+ N+ P D AYYVG++ K++GI+Q Sbjct: 96 KDVIIVVPVDTSAADPMTNAAVTNGTKIVYVNRNPGNLP----DGAYYVGSEEKKAGIMQ 151 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 + +A+ G+ V+L G+ + RT V +E+ K + L Sbjct: 152 MEYLAEKMG----------GKGNIVILMGKLDNEGTIKRTEGV-EEIAKKYPDIKILDKQ 200 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 T +W K + WL N+I +++NND MA+GAV+ALK K+ I V GVDA P Sbjct: 201 TGLWQRTDGMAKTENWL-NKYGNEINAIVSNNDDMALGAVQALKDSGKTGIFVIGVDATP 259 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 + LA + +G ++ TV DA+ Q ++AK A+G+ T VP+ V Sbjct: 260 DGLAALAAGDISATVFQDADGQGGGAVEVAKKAANGETVVKET---------WVPFKLVT 310 Query: 323 KDNLAEFSK 331 +N+ EF K Sbjct: 311 PENINEFKK 319 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 166/310 (53%), Gaps = 18/310 (5%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 IGV IY++ DNFM++ R +E K + + D +NDQ+ Q +QI+ L +GV L Sbjct: 60 NIGVCIYQFADNFMTLYRADLEGYLKDM-GYSVTIMDGKNDQNTQTEQINTFLQQGVDVL 118 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGTDSKESGIIQGDL 145 IN V +A T+++ P+VF N+EP LDSY K YVG D+++SG QG+L Sbjct: 119 VINPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGEL 178 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 I D+N DG+I +++ KG+P + DA+ RT Y IK L D + E L Sbjct: 179 I---LETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDN 235 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALP 262 WD A+ + LS +KIEVV NNDAMA+GA+++++ + + + GVDAL Sbjct: 236 WDQTTAQQDVANALS-QYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALV 294 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 EA+ V G + GTVLND QA + K +GK K V YV V Sbjct: 295 EAVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDV---------EKYYWVDYVKVT 345 Query: 323 KDNLAEFSKK 332 KDN +++ K+ Sbjct: 346 KDNASQYLKE 355 >UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYW8_CLOB8 Length = 350 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 183/324 (56%), Gaps = 21/324 (6%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLL 79 + + V +Y +DD ++S++R+ +E+ K ++ D +NDQS QN ID L+ Sbjct: 36 SKDRPINVAVLLYSFDDIYISLIRQNLEEIQKENEGKIKFTFYDGKNDQSVQNSSIDELI 95 Query: 80 AK-GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR-KALDSYDKAYYVGTDSKE 137 K GV +NLV + V+EK + N+P++ F++EP+ +++ SY+K YVGT +E Sbjct: 96 KKRGVDLFLVNLVTTHSTQEVVEKVKRVNIPIILFSREPAAIESIKSYNKCCYVGTRVEE 155 Query: 138 SGIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 +G++QG+++ W + D NKD +Q+++L G+ + ++ T Y I ++N+ IKT Sbjct: 156 AGLLQGEIVTNLWNEKKSFIDKNKDNVLQYIMLMGQENNLESVKETEYPILKVNNSKIKT 215 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS---- 252 ++L + W+ +AK+ + A L + N++E + ANND MA+GA++AL+ + + Sbjct: 216 QELAVRACNWNEDEAKEVIKA-LFLQHGNRVEAIFANNDPMAIGAIKALQEYGYNKGENT 274 Query: 253 --IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 IPV G++A+PEA L+ +G + G+V D + AK +++ N + GTN++ D Sbjct: 275 PTIPVVGIEAIPEARELIDAGMMTGSVFQDPSEVAKVLYNVGMNYVYNRNPLYGTNYEFD 334 Query: 311 NK--VVRVPYVGVDKDNLAEFSKK 332 VR+PY E+ K Sbjct: 335 ETGISVRLPY--------QEYLGK 350 >UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic galactose-binding protein n=2 Tax=Treponema pallidum RepID=B2S3D7_TREPS Length = 354 Score = 254 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 179/357 (50%), Gaps = 29/357 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + ++ ++ ++ GA + IGV +Y+YD+ ++ +R + K ++L Sbjct: 1 MKGTGMCVALLLCALGAGACKRSEKPTIGVVVYQYDNTLVARLRHILSTVGKKH--ARIL 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQ QS QN ID +A+GV LA+NLVD AA TVIEKA+ +P+VFFN+ P Sbjct: 59 IVDSQASQSIQNKHIDQFIARGVHGLAVNLVDHRAARTVIEKAQQARIPLVFFNRMPDLS 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 L+ Y +AYYVG E G++Q L+A++ D N DG IQ V+LKG+P H Sbjct: 119 DLNRYARAYYVGVKDDELGLLQSRLVAQYLERTPSADKNADGIIQCVVLKGDPDHKSGAR 178 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 YV + L + G+K E + A+ + + M + + ++IE V ANND A+G Sbjct: 179 CARYVCQALREIGLKGEIIGEAFALDSRVKGQAAMHTLI-HTHGDRIEAVFANNDDAALG 237 Query: 241 AVEALKAHN----KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+EAL++ +PV G+DA AL ++ + GTVLND ++Q KA +L L Sbjct: 238 AIEALQSAGFFKENKRVPVVGIDATASALKAIEEDLMLGTVLNDVSSQGKAILNLLFALM 297 Query: 297 -------------------DGKGAADGTNWKIDNKVVRVPYVGVDKDN---LAEFSK 331 +G + + V +PY V K+N + + + Sbjct: 298 GDSVPSIPAEDSTAFTHAGNGVAGRAAVFGTAEKQCVWIPYKVVTKENYRTVQNYLR 354 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 254 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 21/312 (6%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 ++GV IY++ DNFM++ R +E K + + D NDQ+ Q QID + +GV Sbjct: 78 KKVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGV 137 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA----LDSYDKAYYVGTDSKESG 139 L IN V+ ++A T+ +K +P+V+ N+EP + D+ YVG D+++SG Sbjct: 138 DVLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSG 197 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 QG++I+ DLN +G+I +V+++G+P + DA+ RT Y +K L D G++ L Sbjct: 198 TFQGEMISDL--GLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGLEVNCL 255 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVF 256 W QA+ + L G N +EVV NNDAMA+GA++A+++ + + I + Sbjct: 256 SDQVGNWQQDQAQQIVANAL-GQYGNDVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLV 314 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVDAL EAL V +G + GTV ND +Q+ + D A N G G ++ + Sbjct: 315 GVDALSEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITGAG---------NDHYIGC 365 Query: 317 PYVGVDKDNLAE 328 YV V KDN + Sbjct: 366 DYVKVTKDNAQD 377 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 29/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L +V+AS +F + AAD +IGV++ +DDNF++ +R IE AK V + Sbjct: 1 MKKLAL---SVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKS-VDVQ 56 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D +N+ Q +QI +A GV A+ +N VD A ++ A +P+++ N++P Sbjct: 57 IEDGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPIN- 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D +V ++ + SG +Q + + + G+ V++ GE + A Sbjct: 116 VNQLPDNQAFVASNEEVSGTLQTEEVCRLLG----------GKGNVVVMMGELSNQAAIQ 165 Query: 181 RTTYVIKELNDK-GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT + + K + + TA W + D M WLS + + VI+NND MA+ Sbjct: 166 RTKDIHDVIKRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSA--GLEFDAVISNNDEMAI 223 Query: 240 GAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA + S+ V G+DA P+ALA +KSG L TV A Q D A LA Sbjct: 224 GAIQALKASGRKMDSVVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAK 283 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ ++ V VP+ V NL ++ K Sbjct: 284 GENV---------DQKVWVPFELVTPANLDKYLSK 309 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 78/331 (23%), Positives = 143/331 (43%), Gaps = 44/331 (13%) Query: 2 NKKVLTLSAVMASMLFGAAAHAA----------------------DTRIGVTIYKYDDNF 39 +++L++ + M+ G + D +IGV++ ++ F Sbjct: 4 TRRLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLNNPF 63 Query: 40 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 +R+ +E+ A +V+ ++ D+QND S QN+Q++ L+ +GV + IN VD A T Sbjct: 64 FVSIREGVEEAA-GKENVETVITDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTAIATS 122 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 +EKA N+PV+ ++ D + ++ +++ E G + G+ I + N Sbjct: 123 VEKANEANIPVICVDR-----GSDQGELVSFIASNNVEGGKLAGEYILEKVGEN------ 171 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL 219 + + L+G PG R + N K L TA +D A+ M+ L Sbjct: 172 ----AEVIQLEGIPGASSTRERGEGFEEATNG---KINLLASQTANFDRAEGMTVMENLL 224 Query: 220 SGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLN 279 ++ V ND MA+GA EA+KA K + + G D +A+ V+ G L+ TV Sbjct: 225 QAH--PDVKAVFCQNDEMALGASEAIKASGK-DVTIVGFDGNEDAIKAVEEGNLSATVAQ 281 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKID 310 K + A G+ + + ++ Sbjct: 282 KPKEMGKLAIETAIKYLKGEEVEETVDSPLE 312 >UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=Clostridium RepID=A6LXH7_CLOB8 Length = 350 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 173/342 (50%), Gaps = 24/342 (7%) Query: 1 MNKKVLTLSAVMASMLFGAA---------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDA 51 + KK+L+L+ + +L+ + + ++GV + + D F+S V+K +E Sbjct: 3 ILKKILSLTFISIFLLYSTSQTSYASPDISSQTPLKVGVFLNSFSDLFISNVKKNLEDIQ 62 Query: 52 KAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP--AAAGTVIEKARGQNV 108 K + VQ ++ +Q QN+ +D L L +N V + K +N+ Sbjct: 63 KQNENKVQFTFFNANGNQVIQNEDVDKALNDNFNLLVLNPVSTNIDQLQDTLNKVAQKNI 122 Query: 109 PVVFF--NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDGQIQ 165 P++ + +P + +Y + + TD +SGIIQG +I W AN+ D NKD IQ Sbjct: 123 PLILYYAKTKPIVNFIKNYHNSVIIDTDVDQSGIIQGKIIVDTWNANKEKLDKNKDNIIQ 182 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 +++LKG P+ RT Y I +N+ GIKT++L W+ + M++ L + Sbjct: 183 YIMLKGPSNSPETIERTKYSILTINESGIKTQELLSIPCNWEEECGRTSMESTLLTLDG- 241 Query: 226 KIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLN 279 KIE +I+NNDAMA+GA++ L+ + + IP+ G+D LP+A L+ G + GTV+ Sbjct: 242 KIEAIISNNDAMAIGAIKTLQKYGYNKGYNSRNIPIVGIDGLPKAQELINQGIMTGTVVQ 301 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYV 319 D+ A A + + NL G +GTN+K D + +PY Sbjct: 302 DSRAHANAIYTIGMNLISGNTPLNGTNYKFDESGVTINIPYQ 343 >UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRZ3_CLOB8 Length = 349 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 178/346 (51%), Gaps = 24/346 (6%) Query: 1 MNKKVLTLSAVMASMLF----------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD 50 + KK+++ ++A + ++ ++ +DD ++S+VR ++E+ Sbjct: 3 ILKKIVSFIIILAIIPTYNLKTALYANAQVIPKKPVKVATLLFAFDDPYISLVRNSLEEI 62 Query: 51 AKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV--DPAAAGTVIEKARGQN 107 D V D + +Q QN +D L L INLV D +VI KA+ +N Sbjct: 63 QNKNKDSVSFTFLDGRRNQGIQNALLDSALQSDYDLLLINLVSLDKNTVESVIRKAKQRN 122 Query: 108 VPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA-NQGWDLNKDGQIQ 165 +PV+ FN P + + SY++A V T++ +SGI+QG+LI K W + + D N D +Q Sbjct: 123 IPVILFNTVPFDTEPIKSYNRALVVSTNADQSGILQGNLIVKEWNSDKKTMDRNGDNVLQ 182 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 + +LKG AR+TY I +ND GI+T+++ WD AKD + L + Sbjct: 183 YFMLKGPNNSTVTNARSTYSISTINDAGIRTQEILSKFCYWDEICAKDSTE-LLFLRYGD 241 Query: 226 KIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLN 279 KIE +I+NNDAMA+GA+EAL+ + + IPVFG+D +P A L+ G + GTV Sbjct: 242 KIEAIISNNDAMAIGAIEALQKYGYNKEDKSKYIPVFGIDGIPAAKDLINKGVMTGTVFQ 301 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVDK 323 D N A+A + + NL K + TN+K D +++PY Sbjct: 302 DPNQTAEALYSIGMNLVANKNPLENTNYKFDETGVTIQMPYQEYTP 347 >UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=Clostridium butyricum RepID=B1QXR7_CLOBU Length = 351 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 109/346 (31%), Positives = 191/346 (55%), Gaps = 21/346 (6%) Query: 1 MNKKVLTLSAVMASMLF---------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA 51 + + +L +S + S +F ++ V + ++D+ +S +RK +E+ Sbjct: 4 LKRLLLLMSIFVLSTMFLIYQKTNVRILCLERNPAKVSVFLSDFNDDLISEIRKNLEEIE 63 Query: 52 KAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 K D V+ D + +Q QND+I +L +G + +N+VD A + TVI+K + NVPV Sbjct: 64 KKNDDKVEYNFYDGKLNQKNQNDEIAKVLEEGTDLILLNIVDRAYSKTVIDKIKANNVPV 123 Query: 111 VFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWA-ANQGWDLNKDGQIQFVL 168 + FN+EP + + SY +A Y+GTD ++GI+QGD++ W + + D N DG +Q+ + Sbjct: 124 ILFNREPLTSVPIQSYGRAIYIGTDPVQAGILQGDMLIDLWNSSEKIIDRNNDGILQYYM 183 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+GE + +A RT YVI + GIKT+Q+ +D A W A + + + I+ Sbjct: 184 LEGEGDNTEATERTKYVISTIEKSGIKTQQVGVDFADWSEKAAYEHTKEAFEKYSLD-ID 242 Query: 229 VVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDAN 282 V+IAN+D+MA+GAV+AL+ + + IPV GVD +P+A ++ G + G+V D Sbjct: 243 VIIANDDSMAIGAVKALQEYGYNKGEKSKTIPVVGVDVIPKAKEFIEKGYMLGSVYQDPK 302 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVDKDNL 326 + A+A +++ NL + K T + +DN +R+P+ +N+ Sbjct: 303 DYAEALYEVGMNLINYKDPIADTKYTLDNTKVSIRIPHTNYFYNNI 348 >UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0B9_CLOB8 Length = 348 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 114/302 (37%), Positives = 174/302 (57%), Gaps = 12/302 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 I V +Y + D ++S+V + +E+ K V D + +QS Q++ + L++ L Sbjct: 43 IDVVLYNFKDKYVSLVMENLEEIQKQNEGKVVFRFYDGKGNQSTQDEVLSNLVSDNADIL 102 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDL 145 +NLVD A VI + + +N+P++FFN+EP S AL Y KAYYVGT++KE+G +QG + Sbjct: 103 MVNLVDTRATQDVINRFKSKNIPIIFFNREPVSVDALRYYGKAYYVGTNAKEAGEMQGKI 162 Query: 146 IAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 I W N+ D N +G +Q+V+L+GE G +A R+ I +N GIKTEQL L A Sbjct: 163 IVDIWNKNREFIDKNNNGILQYVMLEGEHGSIEARERSESSIGTINKAGIKTEQLALKAA 222 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN------KSSIPVFGV 258 W AK + + L IE +IANND MA+GAVEAL+ + +I V G+ Sbjct: 223 DWQRDLAKTNISSLL-LQYGKNIEAIIANNDEMAIGAVEALQNNGYNLGDKNKTIVVVGI 281 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRV 316 DA EA L+K G +AG+V+ D A+A++ + N+ +G+ GT +K D+ +R+ Sbjct: 282 DATAEAQELIKKGFMAGSVMQDPYEMAEASYAIGMNVFEGRDPLYGTKYKFDDTKVAIRL 341 Query: 317 PY 318 PY Sbjct: 342 PY 343 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 86/325 (26%), Positives = 152/325 (46%), Gaps = 28/325 (8%) Query: 10 AVMASMLFGAAAHAA--DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQN 66 AV+ + + A A D R+GV++ ++D+ +++ + +A+++ A+ P V L + DS + Sbjct: 15 AVLFATVLCLAGSTALADLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVEDSGS 73 Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD 126 D +Q Q++ +A+ V A+ +N D AA G + E+A +P+V+ N P + + Sbjct: 74 DVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREFPA-- 131 Query: 127 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVI 186 +VGTD + G +Q + +A+ G+ +L G H D RT V Sbjct: 132 GVVFVGTDERRLGQMQMEYLAEKMG----------GKGDLAILLGRLAHDDTRKRTAGVK 181 Query: 187 KELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK 246 L + + ++ + W + D + WLS + + V+ANND M +GA AL+ Sbjct: 182 DVL-ARYPQIRVVEEQSGDWQRDKGLDLTNNWLSS--GREFDAVVANNDEMGIGAAMALR 238 Query: 247 AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTN 306 + + V G+D P+ LA + G LA T+L D + D+A L K G Sbjct: 239 QAGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVR-KDVVQGD- 296 Query: 307 WKIDNKVVRVPYVGVDKDNLAEFSK 331 V +P + DN +F + Sbjct: 297 -------VWIPVHLITPDNHTQFQR 314 >UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G468_ABIDE Length = 350 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 102/313 (32%), Positives = 171/313 (54%), Gaps = 9/313 (2%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAK---AAPDVQL--LMNDSQNDQSKQNDQIDVL 78 RIGV++Y+++D F+S ++K +E K ++L + D+ Q QN Q+D Sbjct: 36 QTIRIGVSLYRFNDTFISSIKKEMENYVKYYEKGNGIKLNMEIVDAGGSQLTQNKQVDRF 95 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 ++ + IN V+ A A +I+KA ++PVVFFN+EP + DK YVG KES Sbjct: 96 ISLNYDVICINPVERADASVIIDKALAADIPVVFFNREPVEDDMKRSDKFCYVGAPPKES 155 Query: 139 GIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 I++G ++ + + DL+ DG++ ++LL+GE H D+ RT + +K L D G+ + Sbjct: 156 AILEGKILVDAYKKDSSVLDLDGDGEVSYILLEGEASHQDSIVRTEWSVKTLKDGGVPIK 215 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVF 256 +L D A WD QA M+ W+ ++IE+V++NND MA+GA++ +K ++ + Sbjct: 216 KLAGDIANWDRNQAAALMEGWVK-KYGDEIELVLSNNDDMALGAIDIIKNEKSLKNVKIV 274 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG-AADGTNWKIDNKVVR 315 GVDA AL +K G L G+V +D A+A + A A G+ D + ++ K Sbjct: 275 GVDATAPALEAIKKGELFGSVSSDKPEYARAIIEFAIAKATGRELPKDIKDKAVNGKYYN 334 Query: 316 VPYVGVDKDNLAE 328 V V ++L++ Sbjct: 335 VSQYIVTVESLSK 347 >UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachyspira RepID=C0QYC4_BRAHW Length = 338 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 175/312 (56%), Gaps = 11/312 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGV +Y+YDD++M +++ IE+ + LLM DS N QS QN QID+ L K V LA Sbjct: 27 IGVALYRYDDSYMKFLKQYIEK--NINRNTSLLMVDSYNSQSTQNGQIDMFLQKNVNLLA 84 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 INLVD A V++K N PV+FFN+EP + + +YDK +Y+G S+E+G QG +IA Sbjct: 85 INLVDKTQAQKVLDKISINNKPVIFFNREPGLEVMKTYDKVWYIGGISEEAGYAQGRIIA 144 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 + W WD N+DG+IQ ++LKG+ D RT Y+ K ++ IK + L + M Sbjct: 145 ESWKDRMNWDKNEDGKIQCIILKGDLNDNDTVKRTEYMKKYISSNNIKLDILAEISTMGK 204 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-------IPVFGVDA 260 ++ M + + KIE +I NND +A+GA++ALK ++ +P+ G+D Sbjct: 205 RDESTRIMKSLI-LKYGKKIEYIICNNDYIALGALDALKEIGYNNSSRMLNYVPIVGIDG 263 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK-IDNKVVRVPYV 319 +PE L + + + TV+ + QA+ ++ N+ GK DG + + K + +PY+ Sbjct: 264 IPECLEAINNYGIFATVMQNPKIQAETLCSVSSNIIGGKSPLDGLHISYYNEKYIVIPYI 323 Query: 320 GVDKDNLAEFSK 331 + K NL K Sbjct: 324 PITKYNLDTAIK 335 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 92/347 (26%), Positives = 166/347 (47%), Gaps = 44/347 (12%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADT---------------RIGVTIYKYDDNFMSVVRKA 46 NK +L +++ S+L A +T IGV+I D F++ ++ A Sbjct: 4 NKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNL-DEFLTYMQDA 62 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 ++++A PD + + +D+QND ++Q Q++ +++ V A+ +N VD +A ++ Sbjct: 63 MKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMVNDA 122 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +P++ N+ +VG++S +SG++Q + +AK + + Sbjct: 123 GIPIIIANRTFDGVD----QATAFVGSESIQSGLLQMEEVAKLL----------NNEGNI 168 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 ++ GE GH RT K++ ++ E + TA +D ++ M+ WL+ + Sbjct: 169 AIMDGELGHEAQIMRTEG-NKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNS--GTE 225 Query: 227 IEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 I+ V+ANND MA+GA+ AL+A K + V G+DA P AL +K G L TV DA Q Sbjct: 226 IDAVVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQG 285 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +A A+G+ D +PY V +N+ E+ K Sbjct: 286 ATSVKVAVQAANGEDVEDA----------MIPYELVTPENVEEYEAK 322 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 109/335 (32%), Positives = 167/335 (49%), Gaps = 30/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K ++ + A++L AAHA IG ++ +DD F +++R +E AK V L Sbjct: 1 MKKFII---GIAAAVLVSTAAHAE--TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D+ ND +KQ QI +A GV A+ + VD A + + A +P+V+ N+EP Sbjct: 56 IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +K +V ++ +SG +Q I K DG+ + V++ GE + A Sbjct: 116 DT-LPEKQAFVASNEVDSGTLQTREICKLL----------DGKGKAVVIMGELSNQAARM 164 Query: 181 RTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT + L D+ E +Q TA W Q D M WLS + + VIANND MA+ Sbjct: 165 RTKDIHDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAI 222 Query: 240 GAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA +S S+ + G+DA +ALA + +G L +V DA Q K + D A L+ Sbjct: 223 GAIQALKAAGRSMDSVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSK 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ + + +P+ V K NLAEF K Sbjct: 283 GEAV---------ERKIYIPFELVTKANLAEFQGK 308 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 88/323 (27%), Positives = 146/323 (45%), Gaps = 27/323 (8%) Query: 11 VMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSK 70 + +L + AA RIGVTI + DDNFM+ VR +E+ A+ +VQL D+Q D + Sbjct: 8 IAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARK-ENVQLQFEDAQGDVVR 66 Query: 71 QNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYY 130 Q +Q+ L++ V A+ + VD +A + A +P+V+ N+ P + L Sbjct: 67 QINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVL--PKGVTT 124 Query: 131 VGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN 190 V ++ E+G +Q +A+ G+ L+ G+ R+ V + L Sbjct: 125 VASNDIEAGQLQMRYLAEKMG----------GKGTIALIMGDLAQNSTHDRSEGVKQVLK 174 Query: 191 DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK 250 D ++ TA W + D WL + ++ANND MA+GA AL+ K Sbjct: 175 D-YPGITIVEQQTAEWQRNKGMDLTSNWLLA--GRTFDAIVANNDEMAIGAAMALQQAGK 231 Query: 251 SS--IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 + + + G+D LP+ LA +K G LA +V D QA A + G+ Sbjct: 232 AKGEVAIVGIDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGEPV------- 284 Query: 309 IDNKVVRVPYVGVDKDNLAEFSK 331 + V VP+ + + +A F + Sbjct: 285 --DAEVWVPFQLITPEQVAVFEQ 305 >UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3521B Length = 372 Score = 244 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 177/316 (56%), Gaps = 10/316 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 ++ G+T Y Y D ++ VR + + A+ V + +DSQ D Q + +D + Sbjct: 52 SNGERPVAGMTCYMYSDTHIANVRNTVLKAAET-GTVAVETSDSQFDVGLQMNAMDAFVT 110 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE-PSRKALDSYDKAYYVGTDSKESG 139 KG K L IN ++ A VI+ AR ++P++F+N + PS + +DSY Y+V + +++SG Sbjct: 111 KGCKYLVINNINTNAKDQVIDVARKADLPIIFWNTDSPSDEEMDSYGPCYFVSSAAEQSG 170 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 ++QG+ AK+W + D N +G++ +V+L G+ G+ D E RT Y I + + G++T L Sbjct: 171 VVQGEAAAKYWKEHPEADRNGNGKMDYVMLMGQIGNYDTEMRTKYSIDTVKEAGVETNCL 230 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-----SSIP 254 W A+A+D+M + +S NA+ I++V ANND MA+GA+EALKA + IP Sbjct: 231 LEVVCEWQRAKAQDQMASVISA-NADDIDIVFANNDDMALGAIEALKAAGYFTDESNYIP 289 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA-DGTNWKIDN-K 312 V GVDA L ++ G + T LN+ K + + + L G+ + + ID+ K Sbjct: 290 VLGVDATKVGLQALEDGTMLATSLNNPVIMGKCIYKILELLEAGEEITSENLGYDIDDHK 349 Query: 313 VVRVPYVGVDKDNLAE 328 V + YV + KDNL + Sbjct: 350 RVWLDYVAITKDNLED 365 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 29/330 (8%) Query: 5 VLTLSAVMASMLFGAAAHAAD-TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 VL ++ +MA + G ++ TRIGV I +DD F+ ++ ++ A +++L+ D Sbjct: 51 VLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVD 110 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 ++ D KQ QI + + V + + V+ A + + + +V+ N+ P+ Sbjct: 111 AKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLP-- 168 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 D YVG++ G Q A H ++ G A RT Sbjct: 169 --DGVAYVGSEELRFGEEQAKYAASH-----------SDGGNIGIIMGMMTVEAAILRTQ 215 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 V +K + ++ TA+W +Q M+ W++ +K++++I+NND MA+GA++ Sbjct: 216 GVEDFFKEK-PEYNIIRKQTALWQRSQGMVVMENWINS--GDKLDIIISNNDDMALGAIQ 272 Query: 244 ALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+A K V GVDA P+ L +K+GAL TV D +QA+ D A Sbjct: 273 ALRAAGKLDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAA---------L 323 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G N +K+ +P V KDNLAEF K Sbjct: 324 SGINKTPRDKITWIPAELVTKDNLAEFEAK 353 >UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I5M4_9CLOT Length = 350 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 105/303 (34%), Positives = 172/303 (56%), Gaps = 11/303 (3%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 R GV +Y D ++S ++K +E+ D + + +++ +Q QN QID L+ V Sbjct: 36 LRAGVLLYNEDIYYISEIKKQLEKLESENKDEIDFIFYNAEGNQELQNKQIDELIKMKVD 95 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQG 143 + +N+VD + +VI K + N+PV+FFN+EP S + SY+K+ YVGT + ++G I+ Sbjct: 96 VILLNIVDVHESDSVINKIKENNIPVIFFNREPLSLNGIKSYNKSLYVGTQACDAGKIKS 155 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 ++I D N +G + ++LL+GE + +A+ R+ VI+ LN+ GIKT ++ + Sbjct: 156 EMIINEIKNENIKDKNGNGSLDYILLEGEKDNVEAQLRSECVIRFLNESGIKTNEIASEV 215 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN------KSSIPVFG 257 W+ AK K+++ L ++ IEV+I+NND MA+GAV AL+ I V G Sbjct: 216 CNWEKECAKQKIES-LFDKYSDNIEVIISNNDDMAIGAVLALQEKGYNLGDPNKFISVVG 274 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID--NKVVR 315 + E ++K G + GTVL DA +AK + +A NLA GK A T+++ D VR Sbjct: 275 IGGTEEVREMIKKGFMTGTVLQDAEEKAKVLYRIALNLAQGKEALQDTDYEFDVTGVGVR 334 Query: 316 VPY 318 +PY Sbjct: 335 IPY 337 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 243 bits (621), Expect = 6e-63, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 157/335 (46%), Gaps = 30/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K ++ S+L G AAHA +GV++ +DDNF++V+R + +K V L Sbjct: 1 MKKFII---GAAMSVLLGTAAHAE--TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D+QND +KQ QI +A V A+ +N VD A + + A +P+V+ N++P Sbjct: 56 VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D +V +D +G ++ + + G+ V++ GE + A Sbjct: 116 DS-LPDGQAFVASDETVAGTLEAKEVCRLLG----------GKGNAVIMMGELSNQAARM 164 Query: 181 RTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT L D+ ++ TA W Q D + WLS + VIANND MA+ Sbjct: 165 RTQSAKDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAI 222 Query: 240 GAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA K S V GVDA +ALA +++G L TV DA Q K D A L Sbjct: 223 GAIQALKAAGKDMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVK 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G K V +P+ V +N+ ++ K Sbjct: 283 GDKI---------EKKVYIPFQLVTPENVKDYVAK 308 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 242 bits (619), Expect = 1e-62, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 159/335 (47%), Gaps = 25/335 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + L A + ++ F +A A IGV++ +DDNF++V+R A+ ++ P+V + Sbjct: 1 MKR---ILLAAVMAINFSCSAGAES--IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 M D+QND ++Q Q+ +A GV A+ +N VD A + + A VP+V+ N++P+ Sbjct: 56 MEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANV 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + ++ +D SG +Q + + A K V++ G+ + + Sbjct: 116 DR-LPETQAFIASDEAVSGTLQAQEVCRLLKAR-----GKGKSANVVVMMGQLSNQASRQ 169 Query: 181 RTTYVIKELNDK-GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT V + + ++ TA W +A + M WLS + + VIAN D MA+ Sbjct: 170 RTKDVHDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAI 227 Query: 240 GAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++A+++ V G+D + + L++ G L TV DA Q D A LA Sbjct: 228 GAIQAMRSAGLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLAR 287 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 GK ++ + VP+ + N+A+F + Sbjct: 288 GKKT---------DRTIWVPFQLITPTNVADFVGR 313 >UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY41_CLOB8 Length = 352 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 181/344 (52%), Gaps = 25/344 (7%) Query: 3 KKVLTLS--AVMASMLFGAAA-----------HAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 K++L+++ A++ ++ G + + R+G+ +D+++ ++RK E Sbjct: 5 KRILSIALLAIILVIMLGNNSYMTTNASTNYRQGSPVRVGLFTRDLNDDYIVLLRKNFED 64 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 K P V ++ +QS QN I+ L KG+ + +++V+ +I + N+ Sbjct: 65 IQKNNPGEVSFSFYNANFNQSTQNTDIENALHKGIDLILLDMVNLLEIREMINRISQFNI 124 Query: 109 PVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA-NQGWDLNKDGQIQF 166 PVV FN+ P S +A+ SY KA+YVGTDS + G +QG +IA W Q D NKD +Q+ Sbjct: 125 PVVVFNRVPFSMEAIKSYKKAFYVGTDSAQGGTLQGKMIADAWRNHKQLIDKNKDDTLQY 184 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 VLL GE + + R+ Y + +N+ IKTEQL WDTA AKD +DA L NK Sbjct: 185 VLLVGEKLNKTSIDRSAYSVSTINEAFIKTEQLASPILNWDTASAKDAVDA-LFLRFGNK 243 Query: 227 IEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLND 280 IE +I+N+D+MA+GAV+AL+ + ++ I V G+D + EA LV G + GT + Sbjct: 244 IEAIISNDDSMAIGAVQALQKYGYNTGNKSQSIIVVGLDGVSEAKELVSKGFMLGTASQE 303 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVD 322 + + + NL + +G ++K D V +PY Sbjct: 304 TADMTNTIYTVGMNLVKDRNPLEGVSYKSDETGVAVLLPYEPYT 347 >UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Anaerococcus RepID=C2CJZ2_9FIRM Length = 362 Score = 239 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + +I V +Y D +++ VR+ +E+ K ++L+ D QN+Q Q DQ++ ++A Sbjct: 52 SDGKAKKIAVLLYNGSDTYIASVRQQLEKLDKDDDSIELVFQDGQNNQGTQTDQLNNIIA 111 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESG 139 +GV + +N+VD +AA T +E + +P FFN++ + + K + ++GTD+ E+G Sbjct: 112 QGVDGIFMNIVDISAAPTAMETIKASGIPTAFFNRDMTESMKEDDLKDFIFIGTDAPEAG 171 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 +QG ++ W D NK+G + +V+L G +P+A+ART + +K L D GIK ++ Sbjct: 172 KMQGQILTDLWKKGD-MDRNKNGVLDYVMLNGGLDNPEAQARTEFSVKTLKDNGIKVNEV 230 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN------KSSI 253 A WDT +AK MD WL N + I+ VIANND MA+GA+ AL+A K ++ Sbjct: 231 AFQDAKWDTDKAKTAMDTWLQT-NQDNIDAVIANNDGMAIGAISALQAVGMNTGSSKDNM 289 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI--DN 311 V GVDA A+A + G ++GTV DA AKA D KN GT++K+ D Sbjct: 290 VVVGVDATDLAVAEIDKGTMSGTVKQDAEGMAKALIDTMKNRLANNDFIKGTDYKLGADK 349 Query: 312 KVVRVPYVGVD 322 K +R+ Y Sbjct: 350 KSIRIDYQIYT 360 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 86/330 (26%), Positives = 163/330 (49%), Gaps = 27/330 (8%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 + L ++ G + IGV++ +D NF++++R +I+++AKA + + D+ Sbjct: 1 MKYLKRIVLVAALGCSTSVLAETIGVSMAYFDQNFLTIIRHSIDKEAKAR-GISVQFEDA 59 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D +Q DQ+ ++ GV A+ ++ V+ A + + +P+V+ N+ P L + Sbjct: 60 RGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLPA 119 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 +VG+D K+SG +Q + +A+ + Q ++ G A RT Sbjct: 120 --GVVFVGSDEKQSGTLQMEELARLA----------NYQGNVAVMIGNLTDAGALQRTKD 167 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 V +++ K K + +Q +A + ++ D M W++ N I++V ANND MA+GA+ A Sbjct: 168 V-EQVVAKYPKMKVVQKQSANYSRSEGMDLMLNWIT--NGESIDIVAANNDEMAIGAIMA 224 Query: 245 LKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 L+ K S + V G+DA P+ L + SG + TV DA Q KA+ D+A+ + G+ Sbjct: 225 LQQAGKQGSKVLVGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKL- 283 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +P+ V N+ +++ K Sbjct: 284 --------DPYYWIPFELVTPANMQKYAAK 305 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 87/334 (26%), Positives = 146/334 (43%), Gaps = 35/334 (10%) Query: 5 VLTLSAVMASML------FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 L++ ++AS +G T+ + F+ V ++++A+ A ++ Sbjct: 12 TLSIFLLLASCNQSGTSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKA-GIE 70 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D++ KQ +Q++ +A+ V A+ +N + A+ + KA +P++ N E S Sbjct: 71 LITVDAERSALKQVEQVESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETS 130 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 K + +VG+D ES I IA G+ V++ G G Sbjct: 131 SKP------SAFVGSDDVESARIAMKFIADKLG----------GKGNVVMMHGYMGQAAQ 174 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + L + + L T WD A+A M+ W+ ++I V A+ND M Sbjct: 175 IKREQGAREILK-QYPNLKLLAHQTGEWDRAKAMSLMENWIQS-YGSQINAVFAHNDEMG 232 Query: 239 MGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +GAV+AL K + V +DA+P+AL VK G+L TV +A Q A A Sbjct: 233 LGAVKALTDAGLKDKVIVVSIDAIPDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAK 292 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 G+ +K VP+ V KDNL++F K Sbjct: 293 GQPF---------DKETLVPFQLVTKDNLSKFLK 317 >UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR89_9CLOT Length = 382 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 115/316 (36%), Positives = 175/316 (55%), Gaps = 10/316 (3%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 A+ + V +DD F S R ++ +A+ + + L M D+ ND S N +++V L+K Sbjct: 54 AQAEMKATVIWRAFDDQFQSGFRIIMQNEAEKSGGITLDMQDAANDVSTANSKLEVALSK 113 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 +AI D + +++K VP VFFN EP ++ Y+ +YVG +K+SG + Sbjct: 114 KTDVVAICAPDRESIENMMKKCDADGVPAVFFNMEPMEDTMNRYENIWYVGAQAKQSGEM 173 Query: 142 QGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + +W N+ D N DG++ V+L+GE G D RT + L GI+ E L Sbjct: 174 CAQALINYWNDNKDIADKNGDGKLSLVILQGEIGQQDVTLRTDAYKETLEKNGIEYEILA 233 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS------IP 254 DTA WD AQA DKM+AW++ + IE V+ NND+MAMGAV+A + +S +P Sbjct: 234 CDTANWDQAQALDKMNAWITAYGIDGIEGVLCNNDSMAMGAVQACINNGYNSGDAEKFVP 293 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD---GTNWKIDN 311 + G+DA +AL +K+G+L GTVLND +Q+ A ++ K + G + G N +D Sbjct: 294 IVGIDANIDALEAMKAGSLLGTVLNDRKSQSDAIINVIKAVHAGTEITEDVVGVNCTVDG 353 Query: 312 KVVRVPYVGVDKDNLA 327 K V VPYV VD+ NL+ Sbjct: 354 KYVWVPYVIVDESNLS 369 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 158/341 (46%), Gaps = 35/341 (10%) Query: 1 MNK--KVLTLSAVMASMLFGAAAH------AADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 M K ++L + A +L A + RIG++I DD F + + A+E +AK Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 PD L++ +++ D ++Q QI L+A+ A+ + VD + + A +P++ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 N + D A YVG+DS SGI++ + K +G+ V+LKGE Sbjct: 121 VNNFLKNQD----DAAAYVGSDSITSGIMEAEYAVKQL----------NGKGNVVILKGE 166 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 P H A RT K++ + + + W + W+ N K + ++A Sbjct: 167 PNHETAIKRTEGF-KQVLQNYPEIKIIDEQYGDWKRTLGMQITENWIK--NGTKFDAILA 223 Query: 233 NNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 NND MA+GA+ ALK +N +++ V G+DA P+AL L+K G+L TV +A Q Sbjct: 224 NNDEMAIGAIMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKA 283 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A L G+ NK + VPY V ++ ++ K Sbjct: 284 AYKLVKGEKI---------NKKIFVPYELVVPNDADKYLGK 315 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 78/333 (23%), Positives = 146/333 (43%), Gaps = 43/333 (12%) Query: 3 KKVLTLSAVMASMLFGAAA------------HAADTRIGVTIYKYDDNFMSVVRKAIEQD 50 KK LT+ +A + A + D +IG+++ + F ++ + ++ Sbjct: 2 KKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVKE 61 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 AK +++++ D+Q+D +KQ + ++ LL +GV AL IN D +A T ++ A +PV Sbjct: 62 AKKQ-GIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 V ++ +++ V +D+ + G + D I + + L+ Sbjct: 121 VTLDRSAENGKVETL-----VASDNVKGGQMAADFIVEQLGKG----------AKVAELE 165 Query: 171 GEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVV 230 G PG R + K +D K + TA +D + + M+ L G I+ V Sbjct: 166 GVPGASATRERGSGFHKTADD---KLNVIAKQTADFDRTKGLNVMENLLQG--NPDIQAV 220 Query: 231 IANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 A+ND MA+GA+EA+++ K I V G D +A+ V++G ++ T+ K Sbjct: 221 FAHNDEMALGAIEAIRSSGK-EILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAVQ 279 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 A+++ +GK K + P K Sbjct: 280 AARDILNGKKV---------EKTIPAPLKLETK 303 >UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNS0_CLOCL Length = 360 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 180/353 (50%), Gaps = 26/353 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD-------------TRIGVTIYKYDDNFMSVVRKAI 47 + +K++ S VM + ++ + +GV +Y +DD F +++++ + Sbjct: 3 IFRKIIANSIVMVLITISLSSCNKNSITTNLNIKASNPINVGVLLYSFDDIFTALIKENL 62 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA--AGTVIEKAR 104 E+ PD ++ D + + S Q + I ++ + D +I K + Sbjct: 63 EKIQNQNPDKIKFTFFDGKANLSIQQELIQKIIDMNFDLIITTFDDKKEGILENIINKIK 122 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKDGQ 163 +N P++FFN + +Y KA + T+ ++SGI QG++I W N + D NKD Sbjct: 123 QKNTPIIFFNATIDPNVIKAYKKAIIINTNVEQSGIQQGNIIIDAWNTNRKSIDRNKDNI 182 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 +Q++LL+G P A R+ VIK +ND GIKTEQL W+ AK + + L Sbjct: 183 LQYILLQGSPDSYAAIVRSKSVIKTINDAGIKTEQLSSIVCNWEKDCAKTSISS-LFLRY 241 Query: 224 ANKIEVVIANNDAMAMGAVEALK------AHNKSSIPVFGVDALPEALALVKSGALAGTV 277 NK++++IANNDAMA+GA+E L+ +N +I V G+DA+P A L+K G + G+V Sbjct: 242 GNKLDIIIANNDAMAIGAIETLQKFGYNLENNNKNIAVIGIDAIPPAQDLIKKGVMLGSV 301 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR--VPYVGVDKDNLAE 328 + D + A+ F + NL DG+ +GT++K D V+ +PY K L Sbjct: 302 IQDPHVMAETLFKVGMNLVDGRNPTEGTDYKFDETGVKLILPYQEFTKKTLPS 354 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 234 bits (596), Expect = 5e-60, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 142/329 (43%), Gaps = 30/329 (9%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQLLMNDS 64 L + V+ +M+ GA +IG + + + + + ++ A PDV L++ D Sbjct: 13 LAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDG 72 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 ND SKQ ++ L+A+G+K L I+ + A V+++A + VV +++ + Sbjct: 73 NNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTPV--- 129 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 +VG ++ G+ G+ +AK +G+ + L+G G R Sbjct: 130 ---TVHVGGENLPLGVGAGEFLAKKL----------NGKGNIIELQGTAGASATIDRNKG 176 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + + K + + + +A M+ + +I+ V A+ND MA+GA++ Sbjct: 177 FAEAI-AKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235 Query: 245 LKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 L+A + + + V G+D A VK G LA T + A + A +A G+ + Sbjct: 236 LEAAGRLNEVAVVGIDGQETAFEAVKQGKLAATFVYP--FVAPEGIETAYKVAKGEEVPE 293 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +P V V DN+A+ K Sbjct: 294 ---------TITLPTVSVTPDNIADMIGK 313 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 68/302 (22%), Positives = 132/302 (43%), Gaps = 19/302 (6%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A ++G + ++ F + ++++AK VQ+ + + ND + Q +Q++ L Sbjct: 38 GTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKL-GVQVTILNGNNDPATQLNQVEDL 96 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + V A+ +N D + T +E+A ++PV+ ++ ++ + A ++ ++S E+ Sbjct: 97 IQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKG-----NVACFIASNSVEA 151 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + D + K G+ Q V L+G G R +E+ K Sbjct: 152 GKMAADELIKALG----------GKGQVVELQGVIGTSAEADREKGFDEEI-GKAPGIRV 200 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 + TA +D +QA + M L I+ V A ND MA+GA++A++ K +I + G+ Sbjct: 201 VARQTANFDRSQALNVMQNILQAH--PNIQGVFAQNDEMALGALKAIQEAGKHNIKIVGI 258 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY 318 D EA+ V G L + + + A L +G+ N + P+ Sbjct: 259 DGEKEAVNDVHKGLLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQVNSPLHLVEKNTPF 318 Query: 319 VG 320 G Sbjct: 319 TG 320 >UniRef50_B1QV54 ABC-type sugar transport system, periplasmic component n=3 Tax=Clostridium RepID=B1QV54_CLOBU Length = 347 Score = 232 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 14/329 (4%) Query: 5 VLTLSAVMASMLFGAAAHAADTRI--GVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLM 61 +L ++ + + ++G I V +YK DD +++ ++ +E+ + D + Sbjct: 14 LLCVNLIFVNTVYGKMQANGQKLINASVLLYKGDDKYINEIKMKLEKIQEKNKDKINYKF 73 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRK 120 D + QS QN Q++ +L +G + +N+VD +A +VI K + N+PV+ F +EP S + Sbjct: 74 YDGEKKQSVQNSQLEQILKEGTDLILLNIVDMNSAESVINKIKMSNIPVILFTREPVSLE 133 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++ SY KA ++GTD E+GIIQG +I + W +D N + Q++ +KGE + + + Sbjct: 134 SIKSYGKALFIGTDGAEAGIIQGKIINQAWKEKGIYDKNNNDVFQYIFIKGEKDNIETQL 193 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ YVI L + GI T ++ + WD AK + + L N IE +I NND MA G Sbjct: 194 RSNYVIMSLKNYGINTLEIASEYCNWDKNYAKLVVKS-LFLRYGNSIEGIICNNDEMAEG 252 Query: 241 AVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 ++EAL ++I V G+D L AL L+K + GTV+ + + A A + + Sbjct: 253 SIEALHEFGYNMGNLNNNNIIVVGIDGLDAALELIKKKEMTGTVVQNIDEMANALYVVGN 312 Query: 294 NLADGKGAADGTNWKIDNK--VVRVPYVG 320 NL GK T +K D+ +R+PY G Sbjct: 313 NLVQGKDPLYDTKYKFDSSGVAIRIPYSG 341 >UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridiales RepID=C4ZH94_EUBR3 Length = 325 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 159/340 (46%), Gaps = 25/340 (7%) Query: 1 MNKKVLTLSAVMASMLFGA--------AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 M +K+ + +++ +F A A +++ +I +++ DD F + +Q+A Sbjct: 1 MKRKLAYMLSILLCGVFLATGCGSQTTGAGSSNVKILLSVNAIDD-FRQTLVDTAQQEAD 59 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 A VQL + D++++ Q + I A+G A+ V A + KA ++P+VF Sbjct: 60 AR-GVQLDVFDAEDNIENQVEHIKKAAAEGYDAILCGPVSTDTAVEL--KANAGDIPIVF 116 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 FN P+ K L S + YVG+D +G Q + + +A +I V+ KG Sbjct: 117 FNSCPNEKQL-SEGQYIYVGSDESVAGQYQAEYVLDKFADRD--------EINVVIFKGP 167 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 GH RT V K L G K + D A WD A + + +L +K + VI Sbjct: 168 KGHSATIGRTKGVKKTLEASGKKINYVFEDYANWDGDTAGEMFELFLKT--GSKADCVIC 225 Query: 233 NNDAMAMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 NND MA+G +EA K +S+P+ GVDA + +++G +A TV + Q KA D Sbjct: 226 NNDGMALGVIEACKNAGIDLNSLPILGVDATADGCTAIENGDMAFTVYQSGSGQGKAAID 285 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A+ L G+ D D V VP+ VD +N++ + Sbjct: 286 AARKLISGQSVQDIEGAADDGLYVWVPFEKVDSNNVSSYK 325 >UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RKD3_CLOCL Length = 357 Score = 231 bits (590), Expect = 3e-59, Method: Composition-based stats. Identities = 89/346 (25%), Positives = 176/346 (50%), Gaps = 27/346 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADT-------------RIGVTIYKYDDNFMSVVRKAIEQ 49 K+ LTL+ + ++ + T ++G+ +Y +++ ++S+++K++E Sbjct: 5 KRTLTLTITLIFIIVTLTSCGLKTIKVSSNVSTKNPIKVGILLYSFEEMYLSLLKKSLED 64 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA--AGTVIEKARGQ 106 K D V+ D + + + Q +D ++ K + +N+ + +I +A+ + Sbjct: 65 IEKENTDKVEFTFFDGKANSAIQYQLMDEMINKNFDLIFLNIFESKQEILEDIIYRAKQK 124 Query: 107 NVPVVFF-NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQI 164 N+ ++ F + P+ + SY K + K+ +++G +I W N+ D N D + Sbjct: 125 NIALILFLSTIPNLDIMKSYSKIAIIAAALKDPPVLEGQIIVDEWKTNKKIMDKNGDNIL 184 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+LKG+ ++ RT Y ++ + + GI+T++L W+ AKD + + L Sbjct: 185 QYVMLKGKKDSTLSDTRTKYSLETIKNAGIQTDELSTVVCNWNRETAKDAITS-LFLRYG 243 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVL 278 KIE +IANND +A+GA+E L+ + + IPV G+DALPEA L+K G + G+V Sbjct: 244 PKIEAIIANNDTLAIGAIEGLQKYGYNKGNKSKTIPVVGIDALPEAQELIKKGFMLGSVF 303 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV--PYVGVD 322 ++ A + + NL + K +GTN+K+D+ + + P+ Sbjct: 304 HNPRILADTIYTVGMNLVNEKKITEGTNYKLDSSGIIISAPFEEYT 349 >UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0A2_CLOB8 Length = 350 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 111/327 (33%), Positives = 175/327 (53%), Gaps = 18/327 (5%) Query: 9 SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQND 67 + + A L +GV Y++DD ++ +R ++E V+ +S+N+ Sbjct: 20 TLIEAVPLNSHNDSTNPVNVGVVFYRFDDPYVIDLRHSLEDIESRNEGIVKFNFYNSENN 79 Query: 68 QSKQNDQIDVLLAKG-VKALAINLVD-PAAAGTVIEKARGQNVPVVFFNKEP---SRKAL 122 + QN I+ LL G + L ++LVD +I + +N+PV+F +K + Sbjct: 80 RDIQNQTINNLLESGNIDLLILSLVDLVNDPKELINSIKEKNIPVIFASKRILKVDENIV 139 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAE-- 179 SYDKAYY+ DS+++G +QG L+A W N+ D NKD +Q+++L+G E Sbjct: 140 KSYDKAYYILPDSEQAGRLQGKLLANLWNGNKNTIDTNKDNIMQYIVLQGGINSNSNEST 199 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT Y I + D GIK EQL + W A+D DA L+ NKIEVVIANND MA+ Sbjct: 200 DRTKYCIMTIRDAGIKVEQLASEFCNWSEDLARDATDALLTR-YGNKIEVVIANNDTMAV 258 Query: 240 GAVEALKAHNK------SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 GAV+AL+ H +IPV G+DA+PE+L ++ G +AGTV D + A A FD+A Sbjct: 259 GAVKALQKHGYNKGDGTKNIPVVGIDAIPESLYFIQKGYMAGTVFQDPDVMANAFFDVAM 318 Query: 294 NLADGKGAADGTNWKIDN--KVVRVPY 318 +L+ ++ D +++++P+ Sbjct: 319 HLSGKIRFECPKEYRCDESGRIIQLPF 345 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 85/322 (26%), Positives = 148/322 (45%), Gaps = 29/322 (9%) Query: 12 MASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQ 71 M + A IG ++D F+ + ++ +V+++ D++ND Q Sbjct: 32 MGTESVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQ 91 Query: 72 NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYV 131 Q++ L+A+GV A+ VD A ++++A+ VPVV N++ + + YV Sbjct: 92 IAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVER------EDAYV 145 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 G+DS ++G IQ + +A G+ + ++ G+ GH RT K++ D Sbjct: 146 GSDSLQAGTIQMEEVAAVL----------KGKGKIAIMNGQMGHTAQINRTLG-NKQVVD 194 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS 251 + E + T W + K+ M++W+ + V+ANND MA+GA+ A + Sbjct: 195 QYPGMEVVIEGTGGWSREKGKELMESWIES--GQTFDAVVANNDEMAIGAIMAAEEAGIV 252 Query: 252 SIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 VF G+D P+AL + G L +V DA Q + + A LA G+ A Sbjct: 253 DELVFAGIDGTPDALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESA--------- 303 Query: 311 NKVVRVPYVGVDKDNLAEFSKK 332 K+ +PY + K N+ E+ KK Sbjct: 304 EKMTNIPYETITKRNVDEYKKK 325 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 229 bits (585), Expect = 8e-59, Method: Composition-based stats. Identities = 88/333 (26%), Positives = 159/333 (47%), Gaps = 30/333 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 ++K L + +A++ G+A A +G D F+ + A + +K+ P V++ Sbjct: 4 ISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVN 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +D+ ND SKQ DQID +A+ V A+ + VD +EKA +PV+ + + Sbjct: 64 FSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQSAGG 123 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 K +VG+ + ++G +QG+ + +H + + L+G PG + Sbjct: 124 ------KYTFVGSKNIDAGRLQGEYMKEHLPKG----------AKILYLEGTPGLSHTQE 167 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R L + T L +A +D A+ + W+ K + ++A ND MA+G Sbjct: 168 RKKGFEDALGRSDVTT--LASLSANYDRAEGMKVTEDWIQSF--PKFDAIVAANDQMALG 223 Query: 241 AVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A+EAL+ ++ + + GVD +AL +K+G ++ T+ DA QAKA F++ + L G+ Sbjct: 224 ALEALQGADRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGE 283 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A VP+ + KDN+ +++KK Sbjct: 284 DAPAE---------KLVPFASITKDNVGQYAKK 307 >UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLD6_CLOCL Length = 349 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 106/318 (33%), Positives = 174/318 (54%), Gaps = 15/318 (4%) Query: 15 MLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQND 73 + A+ T +GV + +D +MS+V++++ D ++ D Q++Q+ Q+ Sbjct: 28 ICLQTASVRKITNVGVMFFNINDPYMSLVKQSLNNIQNEHEDTIKFTFFDGQDNQAVQDA 87 Query: 74 QIDVLLAKGVKALAINLVDPAA--AGTVIEKARGQNVPVVFFNKEPSR--KALDSYDKAY 129 + + K L I++V+ V+ KA+ N P++ F+ E S + + SY + Sbjct: 88 ILSSIFNKNFDLLLIDMVNSNETLVSDVVNKAQKNNTPLILFSFELSNIPQIVKSYKRVV 147 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE 188 ++ TDS++SGIIQG +I W AN+ D N+D +IQ+++LKG P R+ Y I Sbjct: 148 FIATDSRKSGIIQGKIIVDKWLANKDILDRNRDDKIQYIMLKGNPDSKATNYRSNYSIST 207 Query: 189 LNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH 248 ++D GI TE+L WD AK M++ L + NK+EV+I+NNDAMA+GA+EAL+ + Sbjct: 208 ISDSGIATEELASRVCNWDKELAKLTMNSLLLNLS-NKVEVIISNNDAMAIGAIEALQKY 266 Query: 249 NK------SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 +IPVFGVD +PEA LV G +A TV+ D N A+A + + NL + Sbjct: 267 GYNKGGKTKNIPVFGVDGIPEARELVNKGIMASTVIQDPNELAQALYTVGINLVLNRNPI 326 Query: 303 DGTNWKIDNK--VVRVPY 318 + T ++ D + +PY Sbjct: 327 ENTKYQFDKTGIAIEMPY 344 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 229 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 145/313 (46%), Gaps = 29/313 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 A A + IG T+ + FM++++ A+E K +V+L++ND+++ KQ Q+D +A Sbjct: 41 AAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSFVA 100 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +GV A+ I+ VD A + ++ +PV+ + + + +VG+ ++ G Sbjct: 101 QGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGD-----QGQVWVGSSNENGGE 155 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 I+ +A+ G+ + +L+G G + R L D E + Sbjct: 156 IEMKYVAEKLG----------GKGKIAVLRGPLGAFAEQGRFAGYETVLKD-YPDIEIVF 204 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVD 259 T W +A ++ L+ +++ ++ ND MA+GA+EA+KA K I + G+D Sbjct: 205 DQTGNWQREEAMALIENLLTA--GTELDAIVCQNDGMALGALEAVKAAGKKDQITITGID 262 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 A+ +AL +K+G L T DA Q D+A A G+ + +P+ Sbjct: 263 AIVDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVER----------MDIPFE 312 Query: 320 GVDKDNLAEFSKK 332 V KDN+ + + Sbjct: 313 LVTKDNVDGYYDR 325 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 229 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 138/318 (43%), Gaps = 34/318 (10%) Query: 1 MNKKVLTLSAVMASMLFGAA------------AHAADTRIGVTIYKYDDNFMSVVRKAIE 48 M K V + + +L + + + IG+++ ++ F ++K IE Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 ++AK +++++ D+QND SKQ ++ L+ +GV AL IN D +A T +E A V Sbjct: 61 KEAKKR-GMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGV 119 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 PVV ++ + +++ V +D+ + G + IA + Sbjct: 120 PVVTIDRSAEQGKVETL-----VASDNVKGGEMAAAFIADKLGKG----------AKVAE 164 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+G PG R + + K + + +A +D + M+ L G I+ Sbjct: 165 LEGVPGASATRERGSGFHNIADQ---KLQVVTKQSADFDRTKGLTVMENLLQGH--PDIQ 219 Query: 229 VVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 V A+ND MA+GA+EA+ + K I V G D +ALA +K L+ TV K Sbjct: 220 AVFAHNDEMALGALEAINSSGK-DILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLA 278 Query: 289 FDLAKNLADGKGAADGTN 306 + A ++ GK + Sbjct: 279 TEAADDILHGKKVQKTIS 296 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 27/313 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A+ IG T+Y F++++ + +E+ A+ L+M D+Q D Q QI+ L Sbjct: 38 ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEEL-GCDLVMLDAQQDAQNQITQIENL 95 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 +A+ V + + VD A IE +P+V N ++ + +YVG D + Sbjct: 96 IAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNM-----LFNTEEPYHYVGPDDVLA 150 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G ++ G+ V+L+G G R L+ K Sbjct: 151 GELEMQNAIDEIG----------GEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINV 200 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFG 257 L TA W +A ++ WL + KI+ ++A+ND MA+GA++AL+A I V G Sbjct: 201 LADQTANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLTDKIVVTG 259 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VDA+ + VK G L GTV DA + A ++ +GK ++ + Sbjct: 260 VDAILDGCNAVKDGTLLGTVYQDAGLEGSEAVQKAYDVLEGKVTEKELSY--------ID 311 Query: 318 YVGVDKDNLAEFS 330 + KDN+ E Sbjct: 312 MKWITKDNVDELL 324 >UniRef50_C5RHD6 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RHD6_CLOCL Length = 363 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 100/332 (30%), Positives = 181/332 (54%), Gaps = 18/332 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLL 60 ++T+S +++ A ++ T +GV + + + + ++K++E AK + V+ Sbjct: 17 IITISICNNAIVIKAISNGIKTETIEVGVVLNNFYNPYNLSIKKSLEDIAKENNNNVKFT 76 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVD---PAAAGTVIEKARGQNVPVVFFNKEP 117 D + +++ +N+ + + + K L + +VD + KA+ +NVP++F N P Sbjct: 77 FFDGKGNEAIENELVGKMFNENYKLLLVAIVDKRSSELVSNFVSKAKNKNVPIIFINTTP 136 Query: 118 SR-KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGH 175 + L+ Y KA + TDS ++ +QG LI W N+ D N D +Q++L++GEP Sbjct: 137 ADIDVLNGYTKALAINTDSIQAATLQGKLIVDAWNTNKKSMDKNNDDILQYILIQGEPES 196 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 A R YVI+ +N+ IKTE+L +A W++ A+ + L +KIE +I+NND Sbjct: 197 YAAIVRNQYVIQTINNARIKTEELAKISANWNSDIAEAAIQP-LFFRYGDKIEAIISNND 255 Query: 236 AMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 +MA+G ++AL+ + + IPVFG+ A+ EA L+K G +AG+VL + A+A + Sbjct: 256 SMAIGTIKALQKYGYNKGNKIKTIPVFGIGAVSEAQELIKKGFMAGSVLQNPRLLAEALY 315 Query: 290 DLAKNLADGKGAADGTNWKID--NKVVRVPYV 319 + NL K +GTN+K D K++ +P+ Sbjct: 316 TVGMNLILNKLPLEGTNYKFDKRGKIILIPFE 347 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 23/332 (6%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 K + +AV+A+++ G A+ IGV++ +DDNF +++R+ ++ A V L + D Sbjct: 2 KSIFTAAVLAALMAGTASA---ETIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIED 58 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 +Q D ++Q +Q++ +A V A+ I L D +AA + A+ +P+V+ N EP Sbjct: 59 AQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRL 118 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 ++A YVG+ ++G + + + K GQ Q +L G+ H + RT+ Sbjct: 119 PKNQA-YVGSKETDAGRLGAEAACQLLKKK-----GKAGQAQIYILMGDLAHQASRDRTS 172 Query: 184 YVIKELNDKGIK-TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 V + L K +A W A D W++ I+ + AN+D MA+GA+ Sbjct: 173 AVKETLAAGECKGVTIADERSAAWMRTNAMDVTTNWITT--GRPIDAIFANSDEMAIGAI 230 Query: 243 EALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 +ALKA K+ + V GV+A + L ++ G L TV +A Q+ + D A LA GK Sbjct: 231 QALKAAGVSKNDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKS 290 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 ++ V VP+ V +N+A+++ K Sbjct: 291 V---------DRQVMVPFELVTPENMAKYNNK 313 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 73/310 (23%), Positives = 125/310 (40%), Gaps = 30/310 (9%) Query: 5 VLTLSAVMASMLFGAA--------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 + TL+A + L + D ++GV++ + F VR I+ AK Sbjct: 19 LFTLTACGGTGLSSKSDSNTKVTKKAPKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKT 78 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + ++D+QND +KQN I+ L+ K V L IN VD +A ++ A +PV+ ++ Sbjct: 79 -NVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDR- 136 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + D V ++S + G + + + + + L+G PG Sbjct: 137 ----SSDGGKVLTLVASNSTKGGQMAAKYMIEKLGKD----------AKIAELQGIPGAS 182 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 R K + + TA +D A+ + L G I + + ND Sbjct: 183 ATRERGKGFDGAAKG---KLDIVSKQTAGFDRAKGLTVTENILQG--NGDIVGIFSQNDE 237 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 MA+GAV+A+KA K I + G D + + VK+G +A TV + A + Sbjct: 238 MALGAVQAVKAAGK-KITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHF 296 Query: 297 DGKGAADGTN 306 +GK Sbjct: 297 NGKTVKKNVE 306 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 133/312 (42%), Gaps = 29/312 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + + IG T+ + F+ V A+E AK V+L+ D++ KQ +Q++ + Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEM-GVELITVDAERSALKQVEQVESFIG 85 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +GV A+ +N + A+ I+ A +P++ N E S K +VG+D ES Sbjct: 86 QGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSETSAKP------TAFVGSDDTESAR 139 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 I IA+ G+ +++ G G R L + L Sbjct: 140 IAMKYIAEKLG----------GKGNILMMHGFMGQAAQIKRDNGAKDILK-ANPGLKLLA 188 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVD 259 + WD A+ + W+ +KI + A ND M MGAV+AL+A K + V VD Sbjct: 189 EQSGEWDRAKGMSLTENWIQS-YGDKINAIFAQNDEMGMGAVKALEAAGLKGKVLVVSVD 247 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 A+P+AL VK G L TV +A Q + A A + K V +P+ Sbjct: 248 AIPDALQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAF---------EKEVLIPFQ 298 Query: 320 GVDKDNLAEFSK 331 VDK N+ F K Sbjct: 299 LVDKGNVEGFLK 310 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 29/306 (9%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 ++ + DD F ++ + AK+A + + D++ D + Q DQ++ ++ A+ Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSA-GLDVEFLDAKGDSNLQIDQLNEAISNKAAAI 128 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + +D + +EKAR +PVV N++ + + +D +E+G +QG+ + Sbjct: 129 VLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL------SDDREAGRMQGEFM 182 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 A H N + V L GE A R + DK + L W Sbjct: 183 ASHLPPN----------AKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSW 232 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEAL 265 A+ M WLS +I V+A ND MA+GA++ALKA N+ + V GVDA P L Sbjct: 233 SKAEGMKAMTLWLS--FFPEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGL 290 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 A V++G L+ TV DA QA L + GK + + +P+ + ++N Sbjct: 291 AAVEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKAPTESLD---------IPFTSITREN 341 Query: 326 LAEFSK 331 +A+F K Sbjct: 342 VAQFVK 347 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 94/357 (26%), Positives = 153/357 (42%), Gaps = 54/357 (15%) Query: 1 MNKKVLTLSAVMASMLFGAAAH-----------------------AADTRI--GVTIYKY 35 M + V L A + + F A + AD +I G+T+Y Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63 Query: 36 DDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 95 + F + A ++ A V+L + D D + Q +Q++ +++ GV A+ +N D A Sbjct: 64 KNEFTVRLSNAAKKKAAEL-GVELKIYDGNYDPNTQINQVETMISDGVDAIILNPQDAKA 122 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 ++KA N+PV+ N +DS YVG+ +G ++ IA Sbjct: 123 CAVAVDKAAAANIPVIGVNTR-----VDSEKLTSYVGSKDVYAGELEMQAIADKIG---- 173 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKM 215 G+ V+L G G R+ + L K + L TA W ++A M Sbjct: 174 ------GKGNIVILDGPLGQSAQLERSEGIQNVLK-KYPDIKVLAEKTANWSRSEAMTVM 226 Query: 216 DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAG 275 + WL +KI+ V+A ND MA+GA +A++A K IP GVD + +AL V+ G L Sbjct: 227 ENWLQAF--DKIDAVVAENDEMALGARKAIEA-KKLDIPTIGVDGITDALDAVEKGTLIA 283 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 T+ D Q ++A A G+ +K + + V KDN+AEF ++ Sbjct: 284 TIFQDGAGQGSKALEIAVAKAKGENV---------DKEYWIDFEPVTKDNVAEFKQR 331 >UniRef50_A6M0H3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0H3_CLOB8 Length = 348 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 175/340 (51%), Gaps = 25/340 (7%) Query: 3 KKVLTLSAVMASMLF-------------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 KK++ + ++ + +I V + ++D ++S+++ +E+ Sbjct: 5 KKIIIFTTILTLFIVTSLNIVKNNIYANAQIKSEKTIKIVVLLSSFNDAYISLIKDNLEK 64 Query: 50 DAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV--DPAAAGTVIEKARGQ 106 K +++ + D +N+ QN+ I L+ L NLV D + I K + + Sbjct: 65 IQKENANNLEFIFLDGKNNTDIQNELITSTLSTDFDLLLANLVNLDANNIDSFINKVKSK 124 Query: 107 NVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQI 164 N+PV+ FN P ++ SY KA + T +++SGI+QGDLI W +N+ D NKD + Sbjct: 125 NIPVLLFNIVPFVTTSIKSYPKALVIATSAEQSGILQGDLIVNAWKSNKAAMDKNKDNIL 184 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+++L + + ART Y I +N GIKTE+L ++ A+ M++ Sbjct: 185 QYIMLTEKNNNTLTTARTRYSISTINISGIKTEELSRISSEGTKEAAQMIMESTF-LKYG 243 Query: 225 NKIEVVIANNDAMAMGAVEALKAHN----KSSIPVFGVDALPEALALVKSGALAGTVLND 280 +KIE +IANND +A+GA+ AL+ + SIPV G DA+PEA L+K G++ GTV+ D Sbjct: 244 DKIEAIIANNDTLAIGAINALQKYGYNIGNKSIPVVGADAIPEARELIKKGSMLGTVIQD 303 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPY 318 + A+A + + NL + TN+K + VV +PY Sbjct: 304 PSEMAEALYKVGMNLIYNRPPLSNTNYKFNETGFVVEMPY 343 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 134/324 (41%), Gaps = 33/324 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAH--------------AADTRIGVTIYKYDDNFMSVVRKA 46 M+K + +L A A + IG+ + + F ++K Sbjct: 1 MSKLMKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKG 60 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 E++A+ + L+ D+Q+D +KQ I+ L+ K VK + +N D A ++ A Sbjct: 61 AEEEAQKQ-GLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAA 119 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV ++ + + A +V +D+ G + + + + Q Sbjct: 120 GIPVVTLDRSVNGGEV-----ASHVASDNVAGGKMAAEYLLEKIG----------NQGDV 164 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 V L+G PG A R + D+ + + A +D A+ M+ L Sbjct: 165 VELEGIPGASAARERGQGFHDVI-DQAKDVKVVGRQPADFDRAKGLSVMENILQA--NKN 221 Query: 227 IEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 ++ V A+ND MA+GAV+AL+A + V G DA +A+ VK+G ++ TV K Sbjct: 222 VKGVFAHNDEMALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGK 281 Query: 287 ATFDLAKNLADGKGAADGTNWKID 310 D AK + DG+ +D Sbjct: 282 TAVDAAKKIIDGQPVDKSLPVPLD 305 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 67/308 (21%), Positives = 126/308 (40%), Gaps = 30/308 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + IGV+I ++ + + AI+ AK + +L ++D+QND + Q + + ++ Sbjct: 44 KKPNELNIGVSISTTNNPYFVSMNNAIKSMAKEK-NTKLTVSDAQNDSATQLNNVQNFIS 102 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + V A+ IN VD A I+ A ++PV+ ++ + + V +D+ +G Sbjct: 103 QNVDAILINPVDSDAIVPAIKAANNAHIPVIAMDRGSNGGTV-----LTTVASDNVAAGK 157 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + + K N ++ + L G PG R E G+ L Sbjct: 158 MAAQAVEKLVGKN----------VKVLELSGTPGASATIDRGKGFNSEAKTLGLNI--LS 205 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 260 +A +D + L ++ + A ND MA+GA +A++A + I +FG+D Sbjct: 206 SQSANFDRTTGLNTTQNMLQSH--KDVQAIFAQNDEMALGAAKAVQATGQ-KIAIFGIDG 262 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 E +K+G + T+ + + GK A ++ P Sbjct: 263 ESETHDAIKAGTMTATIAQQPAKIGEMALQATYDYYQGKKIA---------HMINSPIYL 313 Query: 321 VDKDNLAE 328 VDKDN+ + Sbjct: 314 VDKDNVDQ 321 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 26/332 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 KK L +L A A + IG + + D + + ++ A+ + DVQ+ + Sbjct: 2 KKTLLAMLCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIKLA 61 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DS +D + Q + + + + V AL + DP + A+ +P++ N++P+ + + Sbjct: 62 DSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDEHM 121 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 +VG+D E G IQG+ I A L +L G G RT Sbjct: 122 QY--VTSFVGSDEIEGGRIQGNFIVNTLAGKNAESL---------ILLGPLGQDAVTKRT 170 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 +E+ + + + W+ + + L+G I V+++NND MA+GA+ Sbjct: 171 QG-NEEIFAQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKG--INVIVSNNDEMAIGAI 227 Query: 243 EALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A + I + G+DA P+AL + G L TV A Q ++A A G+ Sbjct: 228 LATRKLGIKDEDITIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKGEK 286 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 V VP+ V D E+ + Sbjct: 287 VPS---------VKWVPFELVTPDKKEEYQAR 309 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 136/309 (44%), Gaps = 25/309 (8%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++GV+I + DD F+S +R + + AK PD+ L D Q KQ Q+ + V Sbjct: 21 IQVGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFEDGQGAVDKQLSQVQSFINGKVDV 80 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + +N VD + + AR VP+++ N+ PS + D Y+G+D E+G +Q Sbjct: 81 IIVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKMG--DGISYIGSDEIEAGRLQMGY 138 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 +A + + ++KG + RT KE+ K + DTA Sbjct: 139 LADMVKDRK--------NVNIAIMKGLLSNDATRFRTQGA-KEVIAKHPNMHVVMEDTAK 189 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALP 262 W + M+ W+ KI+++ AN D MA+GA A+K++ I V G D P Sbjct: 190 WMREDGMNLMNNWI--LTGQKIDILSANADEMAIGAAMAIKSNGLNIGKDILVGGTDGGP 247 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 L +KSG L TV DA +QA D+A+ A G+ D +P+ V Sbjct: 248 NGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKDIN---------FIPFQLVT 298 Query: 323 KDNLAEFSK 331 N +F Sbjct: 299 PQNYQKFIT 307 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 219 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 67/306 (21%), Positives = 131/306 (42%), Gaps = 21/306 (6%) Query: 7 TLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 S ++ G + A + +IG+ + ++ F +++ E+ +K +LL+ D Sbjct: 12 CASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKEL-GYELLVLD 70 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 SQND +K+ I+ L+ G+ L +N D A ++ A N+PV+ +++ + + Sbjct: 71 SQNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGGEV- 129 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 ++ +D+ + G + I + I+ V L+G PG R Sbjct: 130 ----VSHIASDNIKGGELASSFIIDELKNKKD--------IKVVELQGIPGASATRERGK 177 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + DK + + A +D AQ M+ + + + V A+ND MA+GA + Sbjct: 178 GFHNII-DKKSNLKLISSQAANFDRAQGLSVMENIIQAQS--DFDAVFAHNDEMALGAAK 234 Query: 244 ALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 ALK NK I V G D +A ++ ++ TV + + A +++G+ + Sbjct: 235 ALKTANK-KIIVVGFDGDEDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNISK 293 Query: 304 GTNWKI 309 K+ Sbjct: 294 NIPVKL 299 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 79/323 (24%), Positives = 134/323 (41%), Gaps = 31/323 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + + A A DT + + + ++ F ++ E AK L+ Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQDT-MAIVVSTLNNPFFVTMKDGAETRAKEL-GYNLI 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 59 VLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D ++ +D+ G + G+ I + + + + L+G G A Sbjct: 119 -----DVVSHIASDNVVGGEMAGNFIVEKVGE----------KAKVIQLEGIAGTSAARE 163 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + + KG E L A +D + + M+ L+ ++ V A ND MA+G Sbjct: 164 RGEGFMNAV--KGSHMELLASQPADFDRTKGLNVMENLLAA--NPDVQAVFAQNDEMALG 219 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ A++A K + + G D + +A V G LA T+ + + A + G+ Sbjct: 220 ALRAIQASGK-EVMIVGFDGTDDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQ 278 Query: 301 AADGTNWKIDNKVVRVPYVGVDK 323 D + VP V K Sbjct: 279 VED---------YIPVPLKVVTK 292 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 149/341 (43%), Gaps = 39/341 (11%) Query: 1 MNKK----VLTLSAVMASMLFGA-------AAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K+ +L + VM+++L G + IG + D F+ + A E Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 50 DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 AK V L+M D++ D +KQ + + L+A+ V AL + D + V+ A ++P Sbjct: 61 AAKEQ-GVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIP 119 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 ++ N + + K + +VG +ESG I G ++ N + Q ++ Sbjct: 120 IIICNGDIADK-----NYTAFVGCTDQESGEILGTW----------FNDNVEHGSQICII 164 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +G G R + E L TA W +A + WL+ +K++ Sbjct: 165 EGPMGQSGQVGRYAGFEEV--GMLDNFEVLSCQTANWKRDEAMALAEDWLTT-YGDKLKA 221 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 ++ ND MAMGA+ A KA ++ + + GVD L +A+ VK G L +VL D+ Q + Sbjct: 222 IVCENDDMAMGALSACKAAGRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAV 281 Query: 290 DLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++A + +G+ T R+P+ + DN+ + Sbjct: 282 EVALQIINGEDYQKDT---------RIPFHAITSDNVDAYL 313 >UniRef50_C0BEZ2 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0BEZ2_9FIRM Length = 380 Score = 217 bits (553), Expect = 4e-55, Method: Composition-based stats. Identities = 116/373 (31%), Positives = 170/373 (45%), Gaps = 55/373 (14%) Query: 1 MNKKVL--TLSAVMASMLFGAAA--------------HAADTRIGVTIYKYDDNFMSVVR 44 M ++++ L+ VMA + ++D I V Y Y D +++ VR Sbjct: 1 MKRRIVAAMLAGVMALGMLAGCGGSGKSDSDGGSSDKKSSDANIAVFYYTYSDTYIASVR 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP---AAAGTVIE 101 A++ V+ D ++Q+ QN+QID + G AL +N+V A+ ++E Sbjct: 61 TALDAKLDEM-GVEYQDYDGNSNQTTQNEQIDTAIQTGATALIVNIVTSGSVDASSQIVE 119 Query: 102 KARGQNVPVVFFNKEPSRK-----ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QG 155 KA +PV+FFN+ L SYDK +VGTD+ E+G +QG++I + + Sbjct: 120 KAEAAGIPVIFFNRAIEDDKTEGDVLGSYDKCAFVGTDAPEAGHMQGEMIGNYVVEHFDE 179 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIK--------------ELNDKGIKTEQLQL 201 DLN DG+I + + G+ G+ +A RT + ++ E D + Sbjct: 180 MDLNGDGKISYAMFMGQLGNAEAIYRTQFAVEDADKIITDAGKPALEYFDASNSDKYQVD 239 Query: 202 DTAMWDTAQAKDKMDAWLSGPN---ANKIEVVIANNDAMAMGAVEALKAHNK-------- 250 W A + M LS N N IE+VI NND MA GAV AL Sbjct: 240 QDGNWSATAANNYMTTNLSQYNEGSNNMIELVICNNDGMAEGAVSALNDKGYNLGTGKDC 299 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTN-WKI 309 IPVFGVDA A L+ G + TV DA+ A DLAKN A GK DGT+ + I Sbjct: 300 KMIPVFGVDATDAAKQLIADGKMTATVKQDADGMAACIADLAKNAAGGKDLMDGTDSYNI 359 Query: 310 DNKV---VRVPYV 319 KV + +PY Sbjct: 360 SEKVSNKIFIPYQ 372 >UniRef50_A6LWC0 D-galactose-binding protein n=7 Tax=Clostridium RepID=A6LWC0_CLOB8 Length = 355 Score = 217 bits (552), Expect = 5e-55, Method: Composition-based stats. Identities = 93/304 (30%), Positives = 150/304 (49%), Gaps = 13/304 (4%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 I V + DD F V ++++ + V+ + +N+ + Q++ +D L Sbjct: 41 NIAVIFFVTDDPFTMKVIESLKNIENENQNRVKFTFLNPKNNIAIQDEILDAALQTKYDL 100 Query: 86 LAINLVD--PAAAGTVIEKARGQNVPVVFFNK--EPSRKALDSYDKAYYVGTDSKESGII 141 + L D I K + +N P++ N E + +A Y+K +V DSK++GI Sbjct: 101 FILYLPDRRENVVEGAINKIKQKNKPLILMNIIPEVASRASKLYEKVVFVTPDSKKAGIA 160 Query: 142 QGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 QG +IA W N+ D N D +Q+VLL+G P R+ Y I LND GIKT++L Sbjct: 161 QGKIIADFWNKNKSSLDANGDNILQYVLLQGPSDDPQPIDRSKYAISTLNDSGIKTQELA 220 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK------SSIP 254 A W AK +D N +IE +I+NNDAMA+GA+EAL+ + +I Sbjct: 221 RVNANWSKDLAKSSIDNLFLKYNG-RIEAIISNNDAMAIGAIEALQKYGYNKDNKSKNIA 279 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V G+D L EA L+ G + GTV+ D +A+ + + NL + T++K+ + Sbjct: 280 VVGIDGLQEAKDLIDKGIMTGTVIQDPRIEAEVLYKVGMNLIKNLSPTENTDYKVAEGEI 339 Query: 315 RVPY 318 +P+ Sbjct: 340 IIPF 343 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 217 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 145/316 (45%), Gaps = 26/316 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 F A AA IGV + KY+DNF +++R +E+ A D + M + Q+D Q Q Sbjct: 15 FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQV-ALLDADIFMENGQDDVELQMRQFR 73 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+ V A+ + +V +A ++ A VP+VF N+ P + +VG+D Sbjct: 74 NLVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNP--EPATWPALTAFVGSDEL 131 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ESG +Q + +A+ + + V+L G+P + + RT V K + K Sbjct: 132 ESGTLQMEELARRA----------NYKGNVVILVGDPSNKSSVMRTEDVEKVV-AKYPDM 180 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS--SIP 254 + +Q W+ +QA + W+ ++ ANND MA+GA+ L+ K Sbjct: 181 KVVQKKIGNWERSQAATIVIEWVK--QGVDFSIIAANNDEMAIGAIMGLEKTGKKAGDYL 238 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V G+D P+ L L+ G +A +V DA QA D A +A G+ A + V+ Sbjct: 239 VGGIDGTPDGLKLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLA--------SPVI 290 Query: 315 RVPYVGVDKDNLAEFS 330 VP+ + +N +F Sbjct: 291 WVPFKLITPENRQQFE 306 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 89/331 (26%), Positives = 149/331 (45%), Gaps = 27/331 (8%) Query: 1 MNKKVLTLSAVMA-SMLFGAAAHAADTRIGV--TIYKYDDNFMSVVRKAIEQDAKAAPDV 57 MN++ L++V A +M+ A + A+ ++ + ++ F + I+ +A+A V Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQ-GV 79 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 L +D QN +KQ I+ L + V A+ I+ +D A IE+A VPVV ++ Sbjct: 80 NLTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRV 139 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +VG D+ + G + + + L+G+PG Sbjct: 140 DG----VQGILAHVGADNVKGGEAEASAMVAAFPNGAKLFH----------LQGQPGAGP 185 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A R V L+ K + + TA + A+A +A L+ K + +I ND M Sbjct: 186 AIDRNKGVHNVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAA--NGKPDAIICANDDM 243 Query: 238 AMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A+GA+EA A N + + ++G DALPEAL V+ G LAGTV Q++ +A A Sbjct: 244 ALGALEACAARNFTDVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAK 303 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K + K+V + + + KDNL + Sbjct: 304 NKT-------EPKEKLVLLTPIVIGKDNLDK 327 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 91/358 (25%), Positives = 141/358 (39%), Gaps = 44/358 (12%) Query: 1 MNK----KVLTLSAVMASML----FGAAAHAAD-----------------TRIGVTIYKY 35 M K L ++ +M +ML G + +IG + Sbjct: 1 MKKINNLHKLLMTVLMIAMLAFAFTGCTSGPQKEEKTESKSNNDKSSLEGLKIGFCVTNR 60 Query: 36 DDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 95 D ++ I ++ + ++L + D++ D S Q Q+ + G L IN VD + Sbjct: 61 DQ--FQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLLMINCVDAES 118 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 +I A VP VFFN+ PS ++ + YYVG + G G +A+ N Sbjct: 119 IQEIINAAGD--VPCVFFNRMPSDHSVFDEN-HYYVGMSDYDCGYDMGKFMAEWLKDN-- 173 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKM 215 NK VL G G + +RT + K L D G K + DTA WD ++A DK Sbjct: 174 ---NKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYKVNWVFEDTAEWDRSKAMDKF 230 Query: 216 DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGA 272 ++ K + + ANND MA+G +EAL A S P+ G+DA L V G Sbjct: 231 TQFMGS--GKKFDFIAANNDDMALGCIEALTAAGYSAPFDFPIAGIDATENGLLAVGDGT 288 Query: 273 LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 L T + F++A + + D + V DN+ +F Sbjct: 289 LTATFDQSPSKMTNYCFEIAFAILQDTDMPEEVK---DFTWIY-KAEMVTADNVDDFK 342 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 136/332 (40%), Gaps = 24/332 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYD-DNFMSVVRKAIEQDAKAAPDVQL 59 M KK L ++ + S+ F + A D IGVT D++ + A++ P+V+ Sbjct: 1 MQKK-LAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ D+ + ++Q Q+ L+ + V A+ + + A ++ KA+ +PV+ N S Sbjct: 60 IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISE 119 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 K + ++ S + I QG A+ +G+ Q V + G+PG+ A Sbjct: 120 KGQE------FITAFSGPNTITQGQYAAELMCE------GLNGKGQVVQITGQPGYQTAI 167 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R L + W+ +++ M+ +++ KI+ V A +D M + Sbjct: 168 NRQKGFEDSLAADCPGVSIIDSQPGDWNREKSQRVMENFITR-FGTKIDGVYAADDNMGI 226 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GA+ A+K + +I + G +K G+ G+V+ + A A + + +G Sbjct: 227 GALNAIKEADLKNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGD 286 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + V N+ EF + Sbjct: 287 KVEKDNYFDTP---------KVTLANIDEFER 309 >UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridium butyricum RepID=C4ILH6_CLOBU Length = 325 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 83/329 (25%), Positives = 146/329 (44%), Gaps = 17/329 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 VL +A+ S +T++ +I +D F + +E A +V+L + + Sbjct: 12 VLMFTALGCSKKGSQGTSIGNTKVFASIAD-EDKFKQTIVSGMESYADEN-NVELDVAIA 69 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 N+ Q QI KG A+ LV+ A +I A +PV+F N EP L S Sbjct: 70 HNNVETQVQQIKDAKTKGYDAIVCILVESDTAQQIINAAGD--IPVIFTNVEPDSGRLKS 127 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 DK YVG+D E+ + + +++ + + VL +G A RT Sbjct: 128 -DKYIYVGSDENEAAKYTFESLKEYFKDKKSF--------NAVLFEGSMDSKSASVRTES 178 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + +L G + D A WD +AK +A+L + +I+NND MA+G ++A Sbjct: 179 LKSQLKKNGFDVNYVFQDDAGWDREKAKKMFEAFLKL--NVSYDCIISNNDEMALGVIDA 236 Query: 245 LKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 ++ + S +P+ G+DA EA + +G ++ ++ Q ++ A+ L +G + Sbjct: 237 MEENGIDPSKVPILGLDATQEACKAISNGKMSFSIKQSGEGQGESVIKAAQALKNGDKIS 296 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 N K + PY VDK N+ ++ + Sbjct: 297 KIENGDSSGKYIWYPYSKVDKSNVQQYMR 325 >UniRef50_C5RNR8 Putative galactoside ABC transporter n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNR8_CLOCL Length = 346 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 12/309 (3%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAK 81 +GV +Y D F+S+++K +E + D + + D + + + ++ L Sbjct: 36 GRPLNVGVLLYNESDLFISLIKKNLENIQRNNEDKLNFIFFDGKGNTTITHELAIQLSQG 95 Query: 82 GVKALAINLV--DPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 L +NL+ P +I + +N+P V F E S K + +Y KA VG G Sbjct: 96 YYDLLLMNLMTPSPENTEQIISSLKSRNIPFVLFISEVSEKLIFNYKKAAIVGFSLINPG 155 Query: 140 IIQGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 QG ++ W ++ D NKD ++Q+++LKG+P ART ++ + + GIK ++ Sbjct: 156 ATQGQILVDAWNTDKNSIDKNKDNKLQYIMLKGDPTLIVTTARTNAALETITNAGIKIDE 215 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS------ 252 L WD AK M + L N IE +I+NNDAMA+GA++AL+ + Sbjct: 216 LASINIYWDKELAKTTMAS-LFLRYGNSIEAIISNNDAMAIGAIKALQKFGYNKGNKDKS 274 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID-N 311 I V G DA+PEA L+K G + G+VLNDA A+ +++ NL GK +GT +K++ Sbjct: 275 IAVVGFDAIPEAQELIKKGIMLGSVLNDAKTFAEMLYNVGVNLTLGKSPIEGTQYKLNPT 334 Query: 312 KVVRVPYVG 320 + +P+ Sbjct: 335 GTIIIPHEK 343 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 76/302 (25%), Positives = 130/302 (43%), Gaps = 22/302 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + S A A DT + + + ++ F ++ E AK L+ Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQDT-VAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLI 60 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + ++ +D+ G + G I ++ + + L+G G A Sbjct: 121 EV-----VSHIASDNVVGGEMAGHFIEAKIGSD----------AKVIQLEGIAGTSAARE 165 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + + KG K + L A +D + + M+ L+ ++ V A ND MA+G Sbjct: 166 RGEGFMNAV--KGSKMQLLASQPADFDRTKGLNVMENLLAA--NPDVQAVFAQNDEMALG 221 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ A++A KS + + G D + +A V+ G LA TV + + A + G+ Sbjct: 222 ALRAIQASGKS-VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280 Query: 301 AA 302 Sbjct: 281 VE 282 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 213 bits (543), Expect = 6e-54, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 126/329 (38%), Gaps = 34/329 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +L L + +L + IGV+ DD + + I ++A V++ Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + ++++ Q + I+ + + V L + + AA V+EKA G +PVV +++ Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKIL-- 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 S +VG D+ E G G I G+ + + + G G A Sbjct: 118 ---SDRYTAFVGADNCEIGKDVGQYIVNRLG----------GKGKILEITGLEGSTPAME 164 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + L + E W + A +KMD+ L + I +V A ND MA+G Sbjct: 165 RHRGLADALKAE-PGIEITASVDGAWLQSVAGEKMDSILQ--DNKGINLVFAQNDRMAVG 221 Query: 241 A-VEALKAHNKSSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A + A + + + G+DALP + V G L T + +A ++ Sbjct: 222 AYLSARQRQLEKEMLFVGIDALPGKGYGVEQVLEGVLDATFIYPTG--GDKVMQVAMDIL 279 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 + + T VDK N Sbjct: 280 EKRPYERDTKLST---------ALVDKTN 299 >UniRef50_A9KK36 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A9KK36_CLOPH Length = 367 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 108/362 (29%), Positives = 170/362 (46%), Gaps = 45/362 (12%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD-------TRIGVTIYKYDDNFMSVVRKAIEQDAKA 53 M K + + A + +GV Y Y D ++S VR A+++ Sbjct: 1 MKKFWALMLVAVMVFSLSACGGSKGTSGKGSSLNVGVFYYTYSDTYISSVRTALDKSLTD 60 Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP---AAAGTVIEKARGQNVPV 110 A ++ D ++Q+ QN+QID +++G L +N+V A+ +++EKA+ +PV Sbjct: 61 A-GIKYQNYDGNSNQTTQNEQIDTAISQGTNLLIVNIVTSGSMDASNSIVEKAKAAKIPV 119 Query: 111 VFFNK-----EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKDGQI 164 +FFN+ E K L SYDK +VGTD+ E+G +QG ++ + N DLN DG+I Sbjct: 120 IFFNRAVESDEDEGKVLGSYDKCAFVGTDAPEAGHMQGQMVGDYVVKNFDAIDLNGDGKI 179 Query: 165 QFVLLKGEPGHPDAEARTTYVIKE--------------LNDKGIKTEQLQLDTAMWDTAQ 210 + + G+ G+ +A RT + +++ D + W + Sbjct: 180 SYAMFMGQLGNVEAIYRTQFGVEDADKVITAAGKPALQYFDSSNSDKYQVDKDGTWSASA 239 Query: 211 AKDKMDAWLSGPN---ANKIEVVIANNDAMAMGAVEALKAHNK-------SSIPVFGVDA 260 A D M L+ + N IE++I NND MA G + AL +IPVFGVDA Sbjct: 240 ANDYMTTNLAQYSEATNNMIELIICNNDGMAEGVISALNDKGYNLGTADCKTIPVFGVDA 299 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA-ADGTNWKIDNKV---VRV 316 A L+ G + GT+ DA A LAKN+ +GK AD +N+ I KV + + Sbjct: 300 TDAAKQLIADGKMTGTIKQDAVGMADGIAYLAKNIQNGKDLMADTSNFNISPKVSNKIYI 359 Query: 317 PY 318 PY Sbjct: 360 PY 361 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 129/315 (40%), Gaps = 30/315 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDV 77 + V I +D+ F S V A+++ + D + + DS+ D + Q Q++ Sbjct: 60 GGTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVEN 119 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + G +A+ VD + ++ + VP++ FN+ + +VG D Sbjct: 120 QILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFE-------NCDSFVGAD--- 169 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 G + G L+A+ G G+ ++ G G + R +++ L + + Sbjct: 170 -GAVAGSLLARFTGEKTG------GKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQ 222 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPVF 256 + W +A ++ WL I+ ++ ND MAMG A++ KS I V Sbjct: 223 VVIEGAGDWKRDKALQLVETWLQS--GTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVC 280 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GV+ P+ + V+ G +A TV + + QA+ + A G+ + + Sbjct: 281 GVNGDPDGINAVRDGKIAATVFQNPDRQAEEALEAALQYIHGEKP---------ESKIMI 331 Query: 317 PYVGVDKDNLAEFSK 331 P+ V DN+ ++ + Sbjct: 332 PFELVTADNVDDYVQ 346 >UniRef50_C5RJJ5 D-galactose-binding periplasmic protein n=3 Tax=Clostridium cellulovorans 743B RepID=C5RJJ5_CLOCL Length = 350 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 94/309 (30%), Positives = 153/309 (49%), Gaps = 14/309 (4%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAK-AAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 + V I D+ ++ ++K++E K + DS+ DQ QN+ I+ + + Sbjct: 35 KSFKAAVFIRSLDNYLLTDIKKSLEDIEKDQYNKIDFSFFDSKWDQGIQNEYIEKSINEN 94 Query: 83 VKALAINLVDP--AAAGTVIEKARGQNVPVVFFNKEPSR--KALDSYDKAYYVGTDSKES 138 I V I K N+P + + S K + + ++ V D ++S Sbjct: 95 YDIFVIIPVSTKIDEIKNAINKVVASNIPFILYLPTSSSLIKTVQATPRSAIVTRDVEQS 154 Query: 139 GIIQGDLIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 G +QG ++AK W N+ D +KD + +VLL+G P + ART Y ++ L ++ I T+ Sbjct: 155 GTLQGKILAKLWNTNKDTMDKSKDNVLDYVLLQGSPNYLSTIARTKYSLQALTEENIHTK 214 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS----- 252 QL T W+ AK +++ + NKIE +I+NND MA+GA+EAL+ + + Sbjct: 215 QLLSVTCNWEQECAKRAIESAFLTLS-NKIEAIISNNDDMAIGAIEALQKYGYNKSDKSK 273 Query: 253 -IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID- 310 IPV G+ +A L+ G +AGTV+ D Q KA +D+ NL GK GTN K + Sbjct: 274 FIPVVGIGGSSKAKELINQGVMAGTVIEDIPTQIKALYDIGMNLISGKNITYGTNLKTNL 333 Query: 311 NKVVRVPYV 319 V+ +PY Sbjct: 334 GNVITIPYQ 342 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 129/316 (40%), Gaps = 29/316 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 IG+ + + F V+ +++ A ++L + D+Q+D + Q ++ Sbjct: 58 SEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEH-GIELYITDAQDDPTIQMKDVEN 116 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 L+ K A+ I+ D A + IE +PV ++E + + ++G D+ + Sbjct: 117 LITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGGEV-----ISHIGYDAIK 171 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 SG + G + G+ + V ++G G A+ R+ + + D E Sbjct: 172 SGRMAGQYLVDTLG----------GKGKIVEIQGIMGTNVAQNRSQGFNEVMKD-NPDME 220 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPV-F 256 + A +D A+ M+ L +I+ + A ND M +GA+EA++A ++ V Sbjct: 221 IVACQVADFDRAKGMSVMENILQA--NPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKI 278 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G DA+ + L +K+G + T+ KA + A + +GK V + Sbjct: 279 GCDAIDDTLDAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQV---------EPYVIL 329 Query: 317 PYVGVDKDNLAEFSKK 332 V +D + K Sbjct: 330 DNQLVTQDTVDSLVTK 345 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 65/305 (21%), Positives = 134/305 (43%), Gaps = 19/305 (6%) Query: 1 MNKKVLTLSAVMASMLFG--AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 +NKK+ ++ ++ ++ +IG+ + ++ F ++ E++A+ Sbjct: 3 INKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKL-GYD 61 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L++ DSQND +K+ ++ L+ GV AL IN D A +E A N+PV+ +++ + Sbjct: 62 LVVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQAN 121 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 + ++ +D+ + G + + + + G I V ++G PG Sbjct: 122 GGKI-----TSHIASDNIKGGEMAAEYVLDKFKDE-------KGPINVVEIQGIPGASAT 169 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + DK K + + A +D + M+ + I+VV A+ND MA Sbjct: 170 RDRGEGFHNIM-DKNDKFNFISIQAADFDRQKGLQVMENIIQA--NPNIQVVFAHNDEMA 226 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 +GAV+A+KA +++ V G D +A + + + + + +LA + G Sbjct: 227 LGAVKAIKASGINAL-VIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKG 285 Query: 299 KGAAD 303 + + Sbjct: 286 ESIKN 290 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 146/343 (42%), Gaps = 41/343 (11%) Query: 3 KKVL--TLSAVMASMLFGAAAHAAD----------TRIGVTIYKYDDNFMSVVRKAIEQD 50 K++L L+ M S +FG ++AD + V + + ++ V+ Sbjct: 4 KRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGANDA 63 Query: 51 AKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 AK VQ+L +++ D Q I+ + KGV AL + + P AA T +KA + +P Sbjct: 64 AKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEKIP 123 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 VV + + + S +VGT + +G + G+ I+K +++ Sbjct: 124 VVLIDTDANWDKKKS-----FVGTGNIAAGKLGGEYISKKLKKGDEA----------III 168 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +G PG + RT K L GIK ++ A + +A M+ L I+ Sbjct: 169 RGVPGDRTQDERTQGAQKALEAAGIKVV--EIQPANSEREKAISVMENLLQTH--PNIKG 224 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 V ND MA+GAV+AL+ K +I GVD P+AL +K G L GTV ++ + K Sbjct: 225 VFCTNDEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGKKGV 284 Query: 290 DLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + A + G+ + VDK N+ E K Sbjct: 285 ETAVKVLRGEKV---------ETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 124/314 (39%), Gaps = 31/314 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 + IG++ + + + + I + A+ P + D+ D SKQ ++ Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVEN 100 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + K V L I+ + A V++KA + +PVV +++ +A Y+G D+ + Sbjct: 101 FMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEAF-----TTYIGADNVQ 155 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 G G+ G + V LKG G A R ++ + G K E Sbjct: 156 IGRQAGEYFKNTLLPQGG---------KIVQLKGLSGSTPAAEREKGFMEGI--AGSKIE 204 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 + W+ + + KMDA L I+ V A ND MA GA A +A + + G Sbjct: 205 VVDTADGEWERSVGQQKMDALLKAH--PDIQAVYAQNDPMAEGAWLAAQAAGRKDLKFVG 262 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +D LP + V+ G L+ T L + + A+ L + + K Sbjct: 263 IDGLPIESGGIKAVEQGRLSATNLYPTG--GEEAVEAARKLL--------IDCQPVPKEQ 312 Query: 315 RVPYVGVDKDNLAE 328 +P V ++N A+ Sbjct: 313 TLPTELVTRENAAQ 326 >UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRB6_ALIAD Length = 370 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 89/339 (26%), Positives = 149/339 (43%), Gaps = 46/339 (13%) Query: 13 ASMLFGAAAHAA---DTRIGVTIYK--------YDD--NFMSVVRKAIEQDAKAAPDVQL 59 S GAA+ +I + + YDD +F++ ++ K P+ Q+ Sbjct: 35 GSTSTGAASAVNPHPSVKIAFLMPETNTSPRWEYDDRPDFIAAMK-------KLDPNAQI 87 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + ++Q ++ Q Q++ + +G K L + V+ AA T++ +A +VPV+ +++ Sbjct: 88 IYANAQGSEATQLQQVESAITEGAKLLVVAPVNGFAATTIVTEAAKAHVPVISYDRLIQN 147 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 +D YYV ++ E G +QG+ IA+H V+L G P P+A+ Sbjct: 148 AKVD-----YYVSFNNVEVGKLQGEYIAQHTKKG----------GTVVMLDGAPTDPNAK 192 Query: 180 ARTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 V+ L G + T WD+ QA +M L+ + N ++ V+A ND Sbjct: 193 QFAQGAHDVLDPLFKSGKLKLGYEQFTPNWDSQQALTEMQQALTRLH-NHVDAVLAANDN 251 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALV-KSGALAGTVLNDANNQAKATFDLAKNL 295 +A A++AL+ + IPV G DA L + G + TV +A A LA +L Sbjct: 252 LAGAAIQALEQQHIKGIPVTGQDATDAGLHRIYYEGTQSMTVYKPIKEEANAAAQLAYDL 311 Query: 296 ADG-KGAADGTNWKIDNKVVRVPYVG-----VDKDNLAE 328 G K A N ++N VP V V K N+A Sbjct: 312 ITGKKPPASLVNGTVNNGATNVPSVLLQPIVVTKSNVAS 350 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 75/302 (24%), Positives = 126/302 (41%), Gaps = 22/302 (7%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 +K + LSA + S+ +A A D I + + ++ F ++ E A +L+ Sbjct: 7 HKVSVLLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAEAKAAEL-GYKLIA 64 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 DSQND SK+ ++ L +GVKA+ IN D A I A N+PV+ ++ + Sbjct: 65 LDSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHG- 123 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 D ++ +D+ G + G+ IA+ N + + L+G G A R Sbjct: 124 ----DIVSHIASDNIAGGELAGEFIAQQLGKN----------AKVIQLEGIAGTSAARER 169 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + E L A +D ++ + M+ L+ ++ V A ND MA+GA Sbjct: 170 GEGFSNAVTANN--FELLSSQPADFDRSKGLNVMENMLAA--NGDVQAVFAQNDEMALGA 225 Query: 242 VEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 + A++A K I V G D E +A V+ L+ TV A + G+ Sbjct: 226 LRAIEAAGK-DILVIGFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVV 284 Query: 302 AD 303 Sbjct: 285 EK 286 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 34/349 (9%) Query: 1 MNKKVLTLSAVMASML--FGAAAHAADT--RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 + ++ A +L G AAD ++G +Y + + + I++ A Sbjct: 3 ITRRTTLAIIGGAGLLPIAGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANG 62 Query: 57 V-QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 + +L + D D + Q Q D++ + +D AA VI KA +N+PVV N Sbjct: 63 IAELTVFDGNYDHATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVGSN- 121 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 S + ++G+D +G + + + K + V+L G G+ Sbjct: 122 ----GPAKSDELVSFIGSDDVAAGQYEAETLFKAIGD----------KGNIVVLIGPEGN 167 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 E RT K L D L+ TA W ++A M WL+ KI V+A ND Sbjct: 168 LGQELRTEGNKKAL-DANKDITVLERKTANWSRSEAMVLMQNWLTSHKG-KINGVLAQND 225 Query: 236 AMAMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 M +GA+ A+KA +IPV G+D + +A+ V+SG + ++ DA QA+ D+A Sbjct: 226 EMGLGAIAAMKAAGIDPKTIPVVGIDGVTDAVRAVQSGDMILSIRQDAQTQAQGAVDIAL 285 Query: 294 NLADG----------KGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G K +K+ VP+ V K+N AEF +K Sbjct: 286 RRVIGDSYQPLAECWKKYPQMAWGNGTDKLYSVPWTYVTKENAAEFLQK 334 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 86/312 (27%), Positives = 127/312 (40%), Gaps = 26/312 (8%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 AHAA +IG + F +++ E AKA D +L+ D+ D +KQN+ I LL Sbjct: 29 AHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGD-ELIFLDANGDVNKQNNDIQDLLT 87 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + V L IN V+P A I A+ VPV+ ++ + + ++G D+ + G Sbjct: 88 RKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGGV-----TAHLGRDNVKMGK 142 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 GD + + + + ++G+ G AR L G K Sbjct: 143 AVGDAVLAELKKKGTT------RGKVIEIQGDAGGTVMAARRDGFHDALKGSGFKIV--A 194 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 260 A + A A M L ++VV A+ND MAMGA++ L K + V GVD Sbjct: 195 GPYAEYTRANAVTAMQDLLQAH--PDVKVVYAHNDDMAMGALKVLAEAGKKDVFVAGVDG 252 Query: 261 LPEALALVKSGALA-GTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 L EALA + G T LND T A+ + GK V Sbjct: 253 LSEALASMAGGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPA---------FVDAGTK 303 Query: 320 GVDKDNLAEFSK 331 V K N+ EF + Sbjct: 304 AVTKANVGEFKR 315 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 24/327 (7%) Query: 10 AVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA-KAAPDVQLLMNDSQNDQ 68 + + +F AA+ A IGVTI +D F++V+ +A++ +A K +Q+ D+ D Sbjct: 5 IIGTTAMFLAASSAYAGDIGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQVEFADA--DV 61 Query: 69 SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKA 128 +KQ QI +A V A+ +N+V+ A T+ + A +P+V+ N PS KA Sbjct: 62 NKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLD-QLGPKA 120 Query: 129 YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE 188 ++G+ ++G +Q + + K ++++G AE R+ V Sbjct: 121 AFIGSQEIDAGTLQAKEVCRVLKEE-----GKTEDAGILIIQGVLAQHAAEQRSKAVHDV 175 Query: 189 LNDKGIK-TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA 247 + + + TA WD +A+D M W++ +K V++NND MA+GAV +LKA Sbjct: 176 VATPECNFMKIIDEQTAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVNSLKA 233 Query: 248 HN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 + V G+DA EA+ VK+G L TV DA Q + D A LA G+ Sbjct: 234 AGWEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESP- 292 Query: 306 NWKIDNKVVRVPYVGVDKDNLAEFSKK 332 V +P+ V+ N+ + K Sbjct: 293 --------VWIPFELVNAANVDTYLNK 311 >UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic solute-binding protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EAM5_9LACO Length = 322 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 140/317 (44%), Gaps = 16/317 (5%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 L+A M+ + RI V + D ++ + +I+ A + + +S Sbjct: 15 FMLAATGCGMMTNESQSGNGKRIAVLTHTNDSPLINSLTSSIKNAASEK-GATVDVYNSD 73 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 + KQ Q+ ++ A+ I VD A +I A +PVVF+N +PS+ L + Sbjct: 74 QNSEKQIKQLKKVVQNHYDAILIRPVDADTAQEMI--AIAGKIPVVFYNFQPSKSVLKA- 130 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 ++ YVG + + +G +Q + + H + ++ +LKG+ G +E RT Sbjct: 131 NQDVYVGPEEEMAGRLQANYVLDHTSKQ---------ELNVAILKGQNG-LVSEKRTNTF 180 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + L G + D+A W+ +A+ +M+ +L +V+ +NND MA+GA++A Sbjct: 181 KETLEKSGRSVNYVFTDSANWEEEKAEHQMELFLKT--GQPCDVIASNNDDMALGAIKAF 238 Query: 246 KAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 K +K V GVDA +A A + +G + T A Q + + A + +GK D Sbjct: 239 KRAHKKLPIVCGVDATADAKAKISTGEMGLTASQPAKIQGEKCIETALKMIEGKKITDIK 298 Query: 306 NWKIDNKVVRVPYVGVD 322 D V + + Sbjct: 299 GSTADGLYVYTNFKAIT 315 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 129/311 (41%), Gaps = 25/311 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN--DQSKQNDQ 74 G AA +G+ + + F + E A+ D +LL QN D Q + Sbjct: 55 VGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINA 114 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGT 133 ++ + +GV A+ + D A + +A + V+ F+ A++ + +VG Sbjct: 115 VENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGP 174 Query: 134 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG 193 D++ + G+ + + + V+++G PG +A R + G Sbjct: 175 DNRMGAEMAGNALGEALGEG----------GRVVIIEGNPGADNATQRRLGFEDAIATHG 224 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI 253 + E L+ TA W+T +A A L+ ++ V+A ND+MA+G +EAL A + I Sbjct: 225 L--ELLESRTAHWETEEANQVFAAMLTAH--PDLQGVMAANDSMAIGVIEALDAAGRDDI 280 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 V G DA+P L +++ G + TV A DLA + + D W Sbjct: 281 LVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVL--ETGVDLEGW------ 332 Query: 314 VRVPYVGVDKD 324 VR P V + Sbjct: 333 VRTPIELVTAN 343 >UniRef50_C5RHA5 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RHA5_CLOCL Length = 352 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 89/305 (29%), Positives = 174/305 (57%), Gaps = 12/305 (3%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKG-VK 84 ++ V + + ++ + +++E+ K D + + D+Q +Q QN Q+D++L + + Sbjct: 41 KVAVLLGHTGTHIITALGESLEKVEKDNSDKIDFIFYDAQVNQDIQNQQLDLVLKENNID 100 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 + + LV+ V++K +G N+PV F + ++SY+KAY++ ++++ GI+QG+ Sbjct: 101 LILLELVESNNTKHVLDKIKGHNLPVGFMG-DADIIPINSYNKAYWLTINAEQGGILQGN 159 Query: 145 LIAKHWAANQ-GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 ++ W ++ D+NKD +Q+++L G PG+ + R + LND I T+++ Sbjct: 160 ILVDAWNKDKPKIDINKDNIMQYIVLLGTPGNIYTDVRIRSCLSTLNDHHIGTQEIASKV 219 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-----IPVFGV 258 W AKD ++ L +NKIEV+I+N+D MA+GA++AL+ + IPV G Sbjct: 220 CYWSEDMAKDTVENLL-LTYSNKIEVIISNDDVMAIGAIKALQKFGYNKNPTKVIPVVGF 278 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID--NKVVRV 316 D +PEA +L+++ + GTV+ + ++ A TF +A N+ + + +GT+ ID K++ + Sbjct: 279 DGIPEASSLIRNRLMTGTVIQNPDHIAMNTFKIALNILNNRNLIEGTDCLIDPTGKIIYI 338 Query: 317 PYVGV 321 P G+ Sbjct: 339 PNHGI 343 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 74/308 (24%), Positives = 126/308 (40%), Gaps = 26/308 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAAD-TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 K + ++ + + A A RIGV DD++ + I ++A V + + Sbjct: 6 KYMKWITVLFCLLGLAACRQDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVEI 64 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + +D KQ + + + KGV L I+ + A ++E+A + +PV+ +++ Sbjct: 65 RSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL--- 121 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 S Y+G D+ E G G+ IA G+ V L G G A R Sbjct: 122 --SDKYTAYIGADNYEIGRAVGNYIASSL----------KGKGNVVELTGLGGSTPAMER 169 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + +++ + + A W+ A+ +MD+ L KI+ V A+ND +A GA Sbjct: 170 HQGFMAAISN-YPDIKLIDKADAAWEREPAEVEMDSMLRRH--PKIDAVYAHNDRIAPGA 226 Query: 242 VEALKAHNK-SSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +A K + + G+DALP L LV L T + N LA N+ + Sbjct: 227 YQAAKKAGREKEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILE 284 Query: 298 GKGAADGT 305 K T Sbjct: 285 KKSYPRET 292 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 88/343 (25%), Positives = 151/343 (44%), Gaps = 30/343 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDD--NFMSVVRKAIEQD-AKAAPDV 57 +N++ + ++ML GA AA +I + + + +M I+ A V Sbjct: 2 INRRTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKV 61 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++ + D + D Q +QID L + A+ + D A+ I+KA VPV+ Sbjct: 62 EITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVI-----V 116 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 S S + + D +E G I + +AK + VL++G G Sbjct: 117 SALKTSSKNYTASIIVDDREGGRIIAEEMAKRLPSG----------GNLVLMEGPIGQSA 166 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R V L + + L + W A+ + M+ WLS ++I V+A ND M Sbjct: 167 QIERRAGVDAGL-EAHSNLKLLADKSGNWSRAEGQALMENWLSA-YPDQINGVLAENDEM 224 Query: 238 AMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 A+GA+EA+KA N S +PV +D +P+A V++G +A T+ A + + DLA Sbjct: 225 ALGAIEAMKAANVDLSKVPVIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAVDLALRQ 284 Query: 296 ADG---KGAADGTNWKID-----NKVVRVPYVGVDKDNLAEFS 330 G K ++ N ++ K VP++ +DKDN+ ++ Sbjct: 285 VIGTEYKPQSEVWNGLMEWKDGTQKDYVVPWLILDKDNVKKYM 327 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 137/351 (39%), Gaps = 47/351 (13%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K L+ +++++L G+A + +G+++ + F + Sbjct: 1 MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 K ++ +L+ ++ D +KQ I+ L+ K V L +N +D A ++KA+ Sbjct: 61 KGVKDKTSE-IGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAK 119 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQI 164 N+P++F ++ +S D ++ TD+ + G +LI K Sbjct: 120 EANIPIIFLDR-----GANSEDMTTFLETDNVKMGEQAAELILKALKDK------GLNGG 168 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 V ++G G A R + DK + + + ++ ++ + M L Sbjct: 169 NVVEIEGLQGTSAARDRGKGFHNVM-DKHKEVKIVAKQAGDFNQEKSMNVMQNILQA--N 225 Query: 225 NKIEVVIANNDAMAMGAVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTV 277 KI+ V +ND +GA +A+ A N K I V G+D + +A+ VK G + ++ Sbjct: 226 PKIDAVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSI 285 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 D ++ G+ K + + + KDN + Sbjct: 286 SQDPIGMGVQAVEVGLKAIKGEQV---------EKHIYTKFFPITKDNATD 327 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 207 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 29/341 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT-RIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQ 58 + +++L +SA +A++L A A +AD IG + + + + K + A DV Sbjct: 4 ITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVD 63 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L++ +++ +KQ ++ L+ +G+K L I+ D AA I++ +PV+ + Sbjct: 64 LIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLD 123 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 +VG +K G + G IA+ G+ V +KG+P A Sbjct: 124 ------IPVTLHVGPHNKPIGTLAGKYIAEAL----------KGKGNVVEIKGDPAVAPA 167 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + IK + A WD +A M+ L A +I+ V A+ND MA Sbjct: 168 VERHEGFAEAIAGTEIKV--IAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMA 225 Query: 239 MGAVEALKAHNKSS--IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 GA+ A++A + I + G+D A+ V G L T A A LA Sbjct: 226 FGALRAIQAAGRDKEGILIIGIDGENAAIRAVAKGDLTATFTYSTV--APEGVIAAHALA 283 Query: 297 DGKGAADGTNWKIDNK-----VVRVPYVGVDKDNLAEFSKK 332 AA + K + + + K+N AEF K Sbjct: 284 TNDTAALEKLGTLTKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 143/329 (43%), Gaps = 28/329 (8%) Query: 6 LTLSAVMASMLFGAAAHAADT-RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 LTL+ S ++ AA T IGV + D ++ + A+++ A V+L + DS Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEK-GVKLNITDS 77 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D + +Q++ LL + V A+ + +D A+ ++ N+P+ + E + + Sbjct: 78 KKDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVG 137 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y Y+G D +G +Q + + K V G G + R Sbjct: 138 YK--SYIGVDDTVAGQMQAEYLNKLM----------PNGGNLVFAAGVYGASWTDRRKNG 185 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 K +N+ + Q A AK M+ L + +I+ V+ANND MA+GA A Sbjct: 186 FDKTINENFKIVAEFQ---AKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASA 242 Query: 245 LKAHNKSSIP--VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 + +++ V GVD AL ++ G ++ TV D+ Q ++ + +G Sbjct: 243 IADAGRTAEFKAVVGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNG---- 298 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 +DN+ +P+ + KDNL+EF K Sbjct: 299 ----GNVDNRYT-LPFTLITKDNLSEFLK 322 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 82/346 (23%), Positives = 147/346 (42%), Gaps = 34/346 (9%) Query: 1 MNKKVL----TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAP 55 M K+ L T+ ++ + L GA A+A +I + + + + A + A A Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 L + D + D Q++ D + + A+ VD A IE+A+ +PV N Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 S+ L Y+ ++ E+G + + + + V+L+G G Sbjct: 123 VVSKTEL----YDAYINSNDVEAGEMLAKAVIDKAGKD----------AKVVVLEGMLGQ 168 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 R + L + L+ +TA W A+A M+ +L+ ++++ V+A ND Sbjct: 169 SAQVQRLEGINNVLK-QNSGVTILEQNTANWSRAEAITLMENFLTSH-GDQVQGVLAEND 226 Query: 236 AMAMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 MA+GA+E ++ H +PV GVD + +AL VK G ++L DA+ Q++ DLA Sbjct: 227 EMAVGAIEGIRNHGLDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLAL 286 Query: 294 NLADGK------GAADGTNWKI-----DNKVVRVPYVGVDKDNLAE 328 + G D K+ + VP++ V DN+ + Sbjct: 287 SKLVGDTYKPRAKVWDTNGGKLAWNGGKEEHYYVPWLAVTSDNVDK 332 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 137/337 (40%), Gaps = 26/337 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAA-----DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP 55 M K + + ++ +L A ++ + I ++ + V+ + +Q A+ Sbjct: 4 MKKSLFVVLVLVGLLLVSFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQL- 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 + + DSQND +K++ D ++A G A+ N D + +++A+ +PV ++ Sbjct: 63 GYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDR 122 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 + + L + +D+ G++ G+ K +I + L G Sbjct: 123 GINARGL----AVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAK----EIPYAELLGILSA 174 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 R+ + D+ + + + +A +D A + L +I+ + ND Sbjct: 175 QPTWDRSNGFHSVV-DQYPEFKMVAQQSAEFDRDTAYKVTEQILQAH--PEIKAIWCGND 231 Query: 236 AMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAL-AGTVLNDANNQAKATFDLAKN 294 AMA+GA++A +A ++ I +FG D + + +K G T++ A+ + A Sbjct: 232 AMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQ 291 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 G+ + +V V V ++N+ +++ Sbjct: 292 YLRGERSFPE--------IVPVTVELVTRENIDKYTA 320 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 139/339 (41%), Gaps = 31/339 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K+++ L ++ +A A +IG + F + + + ++ AK L+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEK-GYTLI 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D++ D +KQ ++ +L++G+ L +N DP A + E A+ VP V + + + + Sbjct: 59 TTDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALE 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A V ++ ++ + G+ + D + + L G G+ +A Sbjct: 119 A----PVITRVQANNAKNNNLIGEYAVGQF---------GDKPMNCIFLSGNQGNLVGQA 165 Query: 181 RTTYVIKELNDKGIK------TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 R + + + ++ L WD M+ + +KI V + Sbjct: 166 RRDNFLLGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVA-QGDKINCVYSEM 224 Query: 235 DAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 D MA+GA+ ALKA NK ++ V+ D + L VK G L T N+ + ++ Sbjct: 225 DDMALGAIRALKAANKLDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIG 284 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ + V +P + + KDN+ ++ K+ Sbjct: 285 QYQAGQTSFPD--------YVYIPSILITKDNVDKYYKE 315 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 28/328 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 KK+ L+A MA + A A + +I + F +++ + AK V L + Sbjct: 2 KKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKEL-GVNLQVL 60 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DSQ KQ ++ + +G + ++ D A + + + +PVV ++ ++ Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDR-----SV 115 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 + K + G ++ + G GD + + VLL G+PG RT Sbjct: 116 KTDKKVPHFGANNYKGGQAIGDFVKARF----------PNGADIVLLTGQPGSSSNIERT 165 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + L G K + T W ++ +++ L +V+++ ND MA+GA+ Sbjct: 166 QGIRDSLKAGGSKYRLVADQTGNWMRSEGMRIVESVLPSLPKRP-QVILSANDDMALGAI 224 Query: 243 EALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 EAL++ + V G DA+PEALA V+ G LA T N K Sbjct: 225 EALQSQGLKPGEVMVTGFDAVPEALARVRDGWLAATADQRPGYAVTQAMTQLTNNIRTKS 284 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAE 328 A G ++ P + KDNL + Sbjct: 285 AITGADY---------PPTMITKDNLND 303 >UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional regulator n=21 Tax=Bacteria RepID=Q2RGX1_MOOTA Length = 381 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 77/320 (24%), Positives = 136/320 (42%), Gaps = 29/320 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 +A + +IG+++ R AK ++L+ + D + Q Q + Sbjct: 41 ASAKNGDKIKIGLSMDDLRQERWQHDRDLFVAKAKEL-GAEVLVQSANGDDATQLSQAEN 99 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 L+++G+ L + + A ++E A V V+ +++ +D Y+ D+ Sbjct: 100 LISQGINVLVVIPHNGDAMAPIVEAAHKAGVKVLAYDRLIRNADVD-----LYISFDNVR 154 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGI 194 G +Q + + K K + ++ L+ G P +A+ V+K L DKG Sbjct: 155 VGELQAEYLTK-----------KVPKGKYFLMGGSPTDNNAKLFRQGQMNVLKPLIDKGD 203 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSI 253 W +A M+ L+ N N+I+ V+A+ND+ A GA++AL A N + Sbjct: 204 IKVVGDQWVKDWLPEEAMKIMENALTS-NNNQIDAVVASNDSTAGGAIQALAAQNLAGKV 262 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 + G DA A + G + TV A ++A LA G+ G N K++N Sbjct: 263 AISGQDADLAACQRIVEGTQSMTVYKPITTLATRAAEVAVALAKGENI--GANNKVNNGK 320 Query: 314 VRVPYVG-----VDKDNLAE 328 + VP V VDKDN+ + Sbjct: 321 IDVPSVLLTPIMVDKDNMVQ 340 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 62/288 (21%), Positives = 120/288 (41%), Gaps = 24/288 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 +A RIG + D + + ++++ P+ LL D++N ++Q QI L Sbjct: 43 SATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQISQIQAL 102 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + +G+ L ++ + A VIE + +PV+ +++ ++ + Y+G D+ E Sbjct: 103 IDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYN-----AYIGGDNVEI 157 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + G I H G+ + V + G P A+ R +++EL K + Sbjct: 158 GRLAGVFIGNHL----------KGKGRIVEIWGLPSSSPAQERHRGLLEELR-KYPGIQV 206 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFG 257 ++ W+ + A L+ +++V A+ND MA+GA K + + G Sbjct: 207 VKELNGQWERDTVGRVVAAELNTL--KDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFVG 264 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 +DALP + + G L + L + + A + GK Sbjct: 265 IDALPGPNAGMQAITDGILKASFLYPTG--GEEAIETATRILAGKSVK 310 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 71/283 (25%), Positives = 122/283 (43%), Gaps = 21/283 (7%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDVQLLMNDSQNDQSKQNDQIDV 77 A ++G +Y F + A+++ V+L + D + D QN+Q + Sbjct: 46 AQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFET 105 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 ++ + + +D A + KA N+PVV N + L YVG++ Sbjct: 106 MITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDKL-----LSYVGSNDVI 160 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 +G +Q + G+ V+L+G G R + L K + Sbjct: 161 AGAMQAQAVVDAMG----------GKGNVVILEGPIGQSGQVERRQGNLSVL-AKYPNVK 209 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN--KSSIPV 255 L++ TA W A+A + WL+ KI +I ND MA+GA+EA+KA +IP Sbjct: 210 VLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAIEAVKAKGLDPKTIPT 268 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 G+D + +A+ VK+G + +VL DA+ Q++ D+ G Sbjct: 269 AGIDGVSDAVRAVKAGIM-ASVLQDASAQSQGALDVLLRKLIG 310 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 131/324 (40%), Gaps = 36/324 (11%) Query: 8 LSAVMASMLFGAAA--HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 L ++ ++LF A + + IGV+ +D + + + +V L + Sbjct: 7 LYILIFTLLFSACSDNNVKKYVIGVSQCS-EDIWRDKLNNELVMSTYQHDNVTLKFASAN 65 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 ++ Q QI+ + +GV L ++ +VI+KA +PV+ F+++ DS Sbjct: 66 DNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKT-----DSK 120 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 ++G D+ E+G G+ I + DG+ + G A R Sbjct: 121 KYTAFIGADNYEAGYEIGNFIGQQL----------DGKGNIAEICGLQASSPAIERNRGF 170 Query: 186 IKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + L D GIK + W MD+ LS I+ V A ND MA+GA+++ Sbjct: 171 MDALKDYSGIKV--IARKHGDWVKESGVMAMDSVLSQAK-EPIQYVFAQNDRMALGALQS 227 Query: 245 LKAHNKSSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 +K H I + G+DALP + V+ G L + + + LA N+ + K Sbjct: 228 IKKHKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNILEKKP- 284 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDN 325 +K DN + V K N Sbjct: 285 -----YKRDN---YLKGALVTKAN 300 >UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIX2_9ACTN Length = 342 Score = 200 bits (509), Expect = 5e-50, Method: Composition-based stats. Identities = 75/333 (22%), Positives = 135/333 (40%), Gaps = 28/333 (8%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIY--------KYDDNFMSVVRKAIEQDAKAAPD 56 + + L GA A+ I + + YD F + A+ P Sbjct: 1 MFASLLLGGCTLIGANGADAEYTIALLLPESKTARYEAYDRPFFEA------KVAELCPK 54 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 +++ ++ D KQ Q + A+G+ L ++ VD +AA T++ A+ + VPV+ +++ Sbjct: 55 CEVIYANADQDPVKQQQQAESAFAQGISVLVLDPVDSSAAVTIVAAAQSRKVPVISYDRL 114 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 L A++V D+++ G +QG + + AA+ ++ G P Sbjct: 115 IGSPEL-----AFWVSFDNEKVGSLQGKALIERLAADGLSS------GNIAMINGSPTDN 163 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 ++ ++ + DT W +A++ M + ++ N + V A NDA Sbjct: 164 NSRLFKKGAHNVIDGSAFTVVA-EFDTPDWSPDKAQEWMASQVT-QFGNSLVGVYAANDA 221 Query: 237 MAMGAVEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 A GA+ ALKA + PV G DA A+ + SG T+ D +A+ A L Sbjct: 222 TAGGAIAALKAGGVMPLPPVTGQDAELTAIQRIVSGDQYMTIYKDFKREAEIAATHAVAL 281 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 +GK + + V V DN+ E Sbjct: 282 LNGKTLVGQSEETNGIPTTLLSPVIVTIDNIME 314 >UniRef50_C0D489 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D489_9CLOT Length = 398 Score = 200 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 80/332 (24%), Positives = 156/332 (46%), Gaps = 26/332 (7%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 GV Y + D F++ R+ + A A +++ DSQND + Q++ ++ L + Sbjct: 58 STGGATAGVIWYNFADTFIANARQCLGNVAAADGTIKISDADSQNDITVQDNNLNNFLTQ 117 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFN-KEPSRKALDSYDKAYYVGTDSKESGI 140 K L IN ++ AA ++ + + +F N PS A + +YV + S +SG Sbjct: 118 KPKYLVINNINNPAADSIAKTCTDNGIVAIFANTTSPSDDAFAQNENLWYVSSVSTQSGE 177 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT---- 196 G+ I +++ ++ WD N +G++ F+LL+G D R++Y + + G + Sbjct: 178 NMGNAIVEYFNTHENWDRNGNGKVDFILLQGMQTFSDTINRSSYSLAAIEGAGYELGKNI 237 Query: 197 -----------EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + + + ++A+ ++A ++ + I+ ++A+ND A+GA+ AL Sbjct: 238 GGDDVTGVKGGDSINGVLCNFSRSEAQTNVEALIAN-YGDDIDCILADNDDEALGAIAAL 296 Query: 246 KAHNK-----SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 +AH ++IPV GVDA +K+G L T LN+ AK+ + L L G+ Sbjct: 297 QAHGYFTDESNTIPVVGVDATVAGCESIKNGTLLETSLNNPVKLAKSIYKLMYLLEKGEA 356 Query: 301 AADGTNW----KIDNKVVRVPYVGVDKDNLAE 328 + ++ + + Y+ + KDN+ + Sbjct: 357 VTTESIGLDGVHVEGHKILIDYISITKDNVEQ 388 >UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEL4_9BACT Length = 359 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 128/317 (40%), Gaps = 22/317 (6%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 +++ IG+++ + V R AK ++ + + +D S Q ++ + Sbjct: 32 SSSPDHKLLIGLSMDTLQEARWQVDRDVFLARAKEL-GAEVSVASANSDDSTQIRDVNSM 90 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 ++ GV + I D A + +A +PV+ +++ LD Y+ D+ + Sbjct: 91 ISAGVDVIVIIPHDGQAMSEGVRQAHQAGIPVIAYDRSIQDSDLD-----LYITFDNVKV 145 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIK 195 G Q + H + G+ + V + G P +A+ +++ D+G Sbjct: 146 GEAQAQYLIDHLPS--------PGKGRIVRIYGAPTDNNAKMFKQGQDNILQPYIDRGDI 197 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIP 254 + W+ A AK +A ++ N + ++A+ND A GA++ALK S I Sbjct: 198 EVIHEDWAENWEPANAKKITNAAITN-NGSDFHGILASNDGTAGGAIQALKEEGLVSKII 256 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA---DGTNWKIDN 311 V G DA A + G+ T+ A +LA ++A G+ + N Sbjct: 257 VTGQDAEMAACQRIVDGSQIMTIYKPIKALASTAAELAVSMATGQPIIARGEIDNGFKTV 316 Query: 312 KVVRVPYVGVDKDNLAE 328 + +P VDK N+ + Sbjct: 317 PSIFLPITSVDKSNMMQ 333 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 93/348 (26%), Positives = 144/348 (41%), Gaps = 39/348 (11%) Query: 1 MNKKVLTLSAVMASMLFG--------------AAAHAADTRIGVTIYKYDDNFMSVVRKA 46 M K + + ++ M G A A +IGV I + VR+ Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPV-GYFVAVREG 59 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 I++ A +V++ +D+ D SKQ Q++ L++K V +AI VD AA T + A Sbjct: 60 IDKAAAEN-NVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEA 118 Query: 107 NVPVVFFNKEPSRKALDSYDKA-YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 N+P++ F K Y+ YVG + E+G + G+L G + Sbjct: 119 NIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGG---------K 169 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 VL++G PG R V++ L D E + T+ W+ QA ++ + Sbjct: 170 VVLIEGRPGTSPQINRRKGVMEAL-DTNKNFEVVYTQTSNWEKEQALKIVEDLIQKNQT- 227 Query: 226 KIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 I+V+IA +D A+GA ALK N K I V G+ E L VKSG + GT A + Sbjct: 228 -IDVIIAQDDNSAIGAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEE 286 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A +G+ T K V V+K N+ F + Sbjct: 287 GYTAITAAVKYLNGEKVEPVTQMK---------QVEVNKSNVESFKGE 325 >UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESX5_9FIRM Length = 357 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 146/357 (40%), Gaps = 39/357 (10%) Query: 1 MNKKV-----LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK--A 53 M K V + MA+M G + + IGV++ D ++ +K E K Sbjct: 1 MKKTVRRLMVTCMVLGMAAMALGGCSSSKKKVIGVSLPTQD---LARTQKDQEYLTKYLT 57 Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 ++ + + D + Q I+ ++ GV L I+ D ++ VIE A N+PV+ + Sbjct: 58 EMGYEVNVQFGKGDANIQASSIENMITSGVAGLIISPFDSSSMTKVIELAHENNIPVISY 117 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 + L++ YY D + G Q I H +G G ++ G+P Sbjct: 118 DSL----CLNTEYIDYYSADDLEGIGACQAQYIVDHLGVAEG-----KGPFNIEIVAGDP 168 Query: 174 GHPDAEARTTYVIKE----LNDKGIKTEQLQLDTA-----MWDTAQAKDKMDAWLSGPNA 224 +A + L D + Q++ A WD ++A+ +MD+ LS Sbjct: 169 ADNNATYFYKGAMDVLSPYLEDGSLVVPSGQIEFAVCGTPEWDGSKAQSRMDSILSTYYT 228 Query: 225 NK-IEVVIANNDAMAMGAVEALKA--HNKSSIPV---FGVDALPEALALVKSGALAGTVL 278 +K ++ V+ ND +A+GA+ +LK+ + S +P+ G D ++ + +G TV Sbjct: 229 DKRVDAVLTQNDGIALGAISSLKSVGYGSSDMPLPITTGQDCDIASIKSILAGEQTMTVF 288 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV-----DKDNLAEFS 330 D + AK D+ +L G+ +N V V V DKDN E Sbjct: 289 KDISVLAKNAADVIDSLVKGEEPKLENYTTFNNGVKDVKATLVIPKALDKDNCDELL 345 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 26/315 (8%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 + G A A+ + V+ F +R+ +E +A V++ + D+QN+ SKQ + Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKL-GVKVQVLDAQNNSSKQISDL 86 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 +G K + + D A + Q V V+ ++ + +VG D+ Sbjct: 87 QAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGKT----AVPHVGADN 142 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 G D + K + A + V++ +PG + R V L G Sbjct: 143 VAGGRAMADWVVKTYPAG----------ARVVVITNDPGSSSSIERVKGVHDGLAAGGPA 192 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS--SI 253 + + TA QA L+ +V++ ND MAMGA+EA++A + Sbjct: 193 FKIVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKV 252 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 V G DA+PEALA +K+G + TV + Q + A + A + K Sbjct: 253 KVIGFDAIPEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVSLKP---- 308 Query: 314 VRVPYVGVDKDNLAE 328 V + NL E Sbjct: 309 -----VLITSGNLTE 318 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 132/312 (42%), Gaps = 28/312 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A+ I + + F +R++ ++ A + + D+ +D + Q++Q+ Sbjct: 41 TTGSASAKTITFALSTQANPFFVQMRESAQKKADEL-GLAINFQDAADDSATQSNQLANA 99 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 A G + IN D A +++ + +PVV ++ A+++ + A Y+ +D++ Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDR-----AVNNANVASYIASDNETG 154 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G +++ +G+ + ++L+G+ G + R + L D + Sbjct: 155 GKQAAKVLSDAI----------NGEGEILVLQGKTGSSASRERGKGFDEGLKD-NPNIKV 203 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 + TA ++ A+ D L ++ + A ND MA+GA+EAL + + V G Sbjct: 204 VAKQTAEFERAKGLDVTTNLLQAH--PNVKAIFAENDEMALGAIEALGSKAGKDVKVIGF 261 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY 318 D +AL +K G + ++ A+ A L G+ A K ++V Sbjct: 262 DGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETAT---------KKMQVEV 312 Query: 319 VGVDKDNLAEFS 330 V K+N+ +FS Sbjct: 313 VAATKENVDKFS 324 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 119/307 (38%), Gaps = 29/307 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR--IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M L + + +L G + + IG++ DD + + + +A DV+ Sbjct: 1 MKHPFLLVWLTLI-VLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVE 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 +++ D+QN+ Q QI L+ + V L I+ V E+A +P + +++ Sbjct: 60 IIIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRK-- 117 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 +++ +VG ++ E G+ G+ A + N + + G A Sbjct: 118 ---VNTDQYTSFVGANNYEIGLAAGNYAANYLPPNAI----------ILEIWGLTQTSPA 164 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 + R + L ++ + + W A+ ++ + +I+ V A+ND MA Sbjct: 165 QERHKGFVDALRER--EDLSFRKIEGQWLVDTARMELRKL---EHPEQIDFVYAHNDMMA 219 Query: 239 MGAVE---ALKAHNKSSIPVFGVDALP-EALALVKSGALAGTVLNDANNQAKATFDLAKN 294 + A E A + + + GVDA+ L V+ G + + L + A Sbjct: 220 IAAREYFMAWDSIRGRELRIIGVDAVAGAGLEAVEDGRINASFLYPTG--GEQVIRTAMR 277 Query: 295 LADGKGA 301 + G+ Sbjct: 278 IIQGEPV 284 >UniRef50_A6BKJ6 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=A6BKJ6_9FIRM Length = 347 Score = 197 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 78/292 (26%), Positives = 135/292 (46%), Gaps = 8/292 (2%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKA----APDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +G+ +Y D FM + +E V + D++ S+Q Q+ + A+ Sbjct: 52 VGIAVYDRSDTFMESYIRELEDKIGQTKILGKKVSYEIYDAEGIGSRQEKQLQEMYAQDY 111 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 + +NLV+PA+A +V+ A+ ++PV+ FN+E K L +YVGTD++ +G++QG Sbjct: 112 DVMLVNLVEPASAASVLTDAKDADIPVILFNREIDEKDLKISKNVWYVGTDARAAGVMQG 171 Query: 144 DLIAKHWAAN-QGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 +L+ W + D N +G + +VL++GE H DA RT+ ++ + + Q Sbjct: 172 ELLKDLWKKQSRILDWNGNGMLDYVLVEGEESHFDAIRRTSGFLETGAE--LPLNQKGNI 229 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 A W A +K A L +E VI NND MA+G + K N + G++ Sbjct: 230 LAEWKRELAYEKFAA-LDDEAVQNVEAVICNNDDMALGVYDYYKEKNLKLPVIIGINNSE 288 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 E + SG + GT+ N +Q L + + + W K + Sbjct: 289 EMHQKIMSGEMYGTIDNKMEDQVMEICRLMQAILKKDTGSYQKVWYSTPKAI 340 >UniRef50_C9Y333 D-xylose-binding periplasmic protein n=20 Tax=Proteobacteria RepID=C9Y333_CROTZ Length = 343 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 74/337 (21%), Positives = 136/337 (40%), Gaps = 29/337 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L L+ + +L + A D +IG+ I R A++ ++ Sbjct: 14 MKIKQLILTLCASLVLTSFSGIAKDVKIGMAIDDLRLERWQKDRDIFVSKAESL-GAKVF 72 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + ++ Q QI+ ++ +GV L I + V+ +A+ + + V+ +++ + Sbjct: 73 VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVAEAKREGIKVLAYDRMINNA 132 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +D +Y+ D+++ G IQ + K Q + L+ G P +A Sbjct: 133 DID-----FYISFDNEKVGEIQAQSLVD-----------KVPQGNYFLMGGSPVDNNARL 176 Query: 181 RTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 V+K D G W A M+ L+ N NKI+ V+A+NDA Sbjct: 177 FRDGQMKVLKPFVDSGKIKVVGDQWVDGWLPENALKIMENALTA-NNNKIDAVVASNDAT 235 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A GA++AL A + + G DA + + +G TV A ++A L Sbjct: 236 AGGAIQALSAQGLAGKVAISGQDADLAGIKRIMAGTQTMTVYKPITQLANTAAEVAVELG 295 Query: 297 DGKGAADGTNWKIDNKVVRVPY-----VGVDKDNLAE 328 + K ++ ++N + VP + VDK N+ Sbjct: 296 NDKQPK--SDATLNNGLKEVPSRLLTPIKVDKSNIES 330 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 59/287 (20%), Positives = 125/287 (43%), Gaps = 19/287 (6%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 + +D IG + + +++ +A+ +L++ D+Q++ +KQ ++ L+A+ Sbjct: 85 NVSDYLIGYSQLANTGTYRIAETNSMKDEAEKR-GFKLIVTDAQDNTAKQVSDVEDLIAQ 143 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 + L ++ + T ++ A+ +VPV+ ++ +A D Y+ TD G Sbjct: 144 NIDLLILSPREFEGLETALQTAKENSVPVILVDRLAKGEA--GVDYVTYIATDFVWEGQA 201 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 G+ + G + L G G A+ R T + D+ + + Sbjct: 202 AGEWLKDKTG----------GTCNIIELTGTVGSSSAQDRATGF-AGVVDQNEGMKIIAS 250 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGV 258 T ++ ++ + M+ L +++ V +ND MA+GAV+A+KA I V G+ Sbjct: 251 QTGNFERSEGQKVMENLLQAH-GGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGI 309 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 D ++ V +G ++ TV++ TFD + + G+ + T Sbjct: 310 DGEMDSFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPEQT 355 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 124/307 (40%), Gaps = 31/307 (10%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 D +G + +M + ++++Q A V + D+ +D + I+ +LAK + Sbjct: 49 DLTVGFAQSGNPNPWMVALTESMQQSADEY-GVNYIYTDANDDMATHVANIEDMLAKDLD 107 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 L I ++ V+++A + VPV+ + + Y Y +D G + Sbjct: 108 ILVIAPMEDTGLEAVLDEAAEKGVPVILSARTTQGE----YVTTVY--SDQAWEGERCAE 161 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 LI + + V L+G G R + ++ E + TA Sbjct: 162 LIGEKIPD-----------AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQTA 210 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDAL 261 + +A D M L + I+ V +ND MA+GAV+A+K + I V G+D Sbjct: 211 NFSRQEAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQ 270 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 EA LVKSG + GTV + F++ + + DG+ T VP + Sbjct: 271 KEAWELVKSGEMLGTV-QCSPKHGPTVFEVIQKILDGETVQKET---------IVPDQVI 320 Query: 322 DKDNLAE 328 K+N+ E Sbjct: 321 TKENVDE 327 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 67/317 (21%), Positives = 118/317 (37%), Gaps = 30/317 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A A T+IG ++ ++ F ++ +E+ AK L+ ++ D +Q + L Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQ-GFDLVQTNANGDAQQQVNDAINL 119 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 L++GV AL +N +D A +EKA N+PV ++ D +V +D+ Sbjct: 120 LSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDR-----GSDGGKVTSFVASDNVAL 174 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G IA G + V L G G A R E+ K + Sbjct: 175 GQTAAKWIADQLTKRYGSA-----KGNVVDLIGLVGTTAATDREKGFSDEI-AKYPDIKV 228 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS------ 252 + +D ++ + M L +I+ V ND +GA +A+ + Sbjct: 229 VARQEGAFDQEKSLNAMTNILQKY--PQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQ 286 Query: 253 -IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 I V G D +AL+ +++G T+ + A + + K W Sbjct: 287 HILVIGADGTAQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAW---- 342 Query: 312 KVVRVPYVGVDKDNLAE 328 P + +DK N+ Sbjct: 343 -----PTLLIDKSNIDS 354 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 70/327 (21%), Positives = 131/327 (40%), Gaps = 31/327 (9%) Query: 3 KKVLTLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 K + L V S+L + + ++G + DN+ + K+++ +A PD+ L Sbjct: 2 KYLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDIIL 61 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + D++N + Q I+ + GV L ++ + IEKA +P + +++ Sbjct: 62 EIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIEG 121 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + YVG ++ E G I H G+ + + G+ G A Sbjct: 122 Q-----NFTAYVGANNIEIGRNAAKYILSH----------SSGKADIIEITGQEGSSPAY 166 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R+ K L D + + + W+ + K+ L A + + A+ND MA+ Sbjct: 167 ERSMGFKKTL-DSVPELKVRHVIKGDWEKTSIQSKLSDLLDSVKAP--DYIFAHNDRMAL 223 Query: 240 GAVEALKAHNK-SSIPVFGVDAL---PEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 GA E ++ + I + GVD + + LVK L T+L T LA+++ Sbjct: 224 GAWEVARSKSLEEEINIIGVDGVFGPNGGIQLVKDNILNATILYPTGGM--ETIKLAEDI 281 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVD 322 +G+ + V + V VD Sbjct: 282 LNGENVNKNNIL----RTVIIDSVNVD 304 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 71/345 (20%), Positives = 126/345 (36%), Gaps = 40/345 (11%) Query: 1 MNKKVLTLSAVMA---------SMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA 51 MNKK +++ A ++ AA IG++ + + + I A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 52 KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 + P+ +++ D+ D SKQ I+ + GV + + + + A +PV+ Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 +++ D ++G D+ + G I G+ IA + G + +KG Sbjct: 121 LLDRKI-----DGDKYTQFIGADNVDMGRIAGEYIADTLLPDGG---------KVCEIKG 166 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G R + + K K E + ++ A W +A + L ++I++ + Sbjct: 167 LEGTSGGIDRDNGFREGIK-KNDKIEIVAVNNADWLREKAITVAEEMLQT--NDEIDLFL 223 Query: 232 ANNDAMAMGAVEALKAHNK-SSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKA 287 A ND MA GA A K + I G D LP + V G L+ T Sbjct: 224 ALNDPMAEGAYIAAKNAGREGDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTE 281 Query: 288 TFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + A L K +K + + V DN E +K Sbjct: 282 AIESAYQLL--------VEGKELDKTLTLTSEIVTPDNAEELLEK 318 >UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 Tax=Rhizobium etli GR56 RepID=UPI00019034CB Length = 854 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 77/281 (27%), Positives = 126/281 (44%), Gaps = 18/281 (6%) Query: 9 SAVMASMLFGAAAHAADT-RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQND 67 +A +AS+ + A+ IGV++ D F ++ ++ K ++L+ ++ D Sbjct: 3 TATLASIALAISVSVANAQTIGVSMTNL-DKFREMLVNGVDSHGKTISGLKLVTQNANGD 61 Query: 68 QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK 127 Q Q+ +A V A+ + L D + + A +P+++ N PS LD D Sbjct: 62 NELQKKQVQQFVADKVDAIIMMLSDGDLGPQMTKIAADAGIPLIYINTTPSN-LLDLPDN 120 Query: 128 AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIK 187 V +D K+SG ++ + G+ + V+L GE H A RT + Sbjct: 121 QVVVASDEKDSGTLETKQVCSLL----------KGKGRVVVLMGEVFHVAARTRTQDIAD 170 Query: 188 ELNDKGIK-TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK 246 + K E ++ A W A +M WL+ K + VIANND MA+GA+ A+K Sbjct: 171 VIATPECKGLEIVEQQAAYWSRDYADQQMQEWLAA--GVKFDAVIANNDEMALGAIRAMK 228 Query: 247 AHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 N + V GVDA +ALA + +G L T+L A Q Sbjct: 229 KANIPMKDVVVAGVDATDDALAAMVAGDLDVTILQSAVGQG 269 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 111/311 (35%), Gaps = 37/311 (11%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 + IGV+ +D + + A +V+L + + +Q QID L Sbjct: 18 CSQGGKRYTIGVSQCS-EDIWREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + +G+ L + I++A + +PV+ F ++ S ++ D+ E Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKT-----GSQKYTAFISADNYEM 131 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND-KGIKTE 197 G + G+ I G+ + +KG G A R + + D GIK Sbjct: 132 GHVMGEYIVSRLH----------GKGNVLEIKGLAGSSPAIERHNGFMDAIKDEPGIKVV 181 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 W A A K WL+ +++V ND AMGA EAL G Sbjct: 182 G--SLQGDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREALGE----KPLYCG 235 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +D LP + LV+ L + + + DLA + +G+ K Sbjct: 236 IDGLPGKNGGIQLVRDSLLDASFIYPTH--GDQLMDLAIRILEGQP---------YEKET 284 Query: 315 RVPYVGVDKDN 325 + V DN Sbjct: 285 MLMSALVTHDN 295 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 75/328 (22%), Positives = 130/328 (39%), Gaps = 34/328 (10%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 N ++L V+ + + A RIGV+ +D + + I ++A DV++ + Sbjct: 5 NLRILFFLLVLWGVAVACSRREARFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVDI 63 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + +D +Q I L+A+GV L + + V+E+A + +PV+ +++ Sbjct: 64 RTAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKIL--- 120 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 S YVG D+ E G G+ +A GQ V + G G A R Sbjct: 121 --SDKYTAYVGADNYEIGKAVGEYVANVLH----------GQGDVVEISGLVGSTPAVDR 168 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 +K ++ L ++ W +A +KMD LS I++V A ND MA GA Sbjct: 169 HQGFVKAIS-AYPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPH--IDLVYAQNDRMAAGA 225 Query: 242 VEALKAHNK-SSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A + + G+DAL + V +G L T + +A ++ + Sbjct: 226 YAAAAREGREKDMRFIGIDALSGKDYGVEKVLAGELDATFIYPTG--GDRVMQIAMDILN 283 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDN 325 + T + VD+DN Sbjct: 284 KRDFPRET---------ILGTSVVDRDN 302 >UniRef50_A6TRZ6 Monosaccharide-transporting ATPase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRZ6_ALKMQ Length = 353 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 77/358 (21%), Positives = 151/358 (42%), Gaps = 48/358 (13%) Query: 2 NKKVLTLSAVMASMLFGAAAHA--------------------ADTRIGVTIYKYDDNFMS 41 +KK+L+ +M ++ A A R+G+++ + Sbjct: 3 SKKILSFLLMMVMVVTLLAGCGGQQETAEETAGEETVVEEPEAKIRVGLSLPTQREERWV 62 Query: 42 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE 101 ++ +E A ++L++ S + +Q Q++ LL +G+ L + D +AA +++E Sbjct: 63 RDKERMEAYAAE-VGIELIVRVSDANIQEQITQVEALLNQGIDVLILAPHDASAAASLVE 121 Query: 102 KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +A + VPV+ +++ + ++ Y+ D+ + G +QG I + Sbjct: 122 QANREGVPVISYDRLIT----NTDKLDIYLSFDNVKVGELQGKYITEQVPE--------- 168 Query: 162 GQIQFVLLKGEPGHPDAEARTTYV---IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW 218 +++++ G P +A I+ L D G + W A ++A Sbjct: 169 --GRYIIMSGAPTDNNATLFKQGAMSYIQPLIDAGKIEVIAEQAVDNWVPENALRIVEAA 226 Query: 219 LSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTV 277 LS N N+++ ++A ND A A++AL A +P+ G DA A + G + T+ Sbjct: 227 LSA-NDNQVDAILAPNDGTAGAAIQALTAQGLAGQVPITGQDAEVSAAKRIVDGTQSMTI 285 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG-----VDKDNLAEFS 330 D + ++A LA+G+ + TN ++DN VP V V DN+ E Sbjct: 286 FKDTRLLGEEAINIAIKLANGESIS--TNGEVDNGRFNVPSVLLEPQVVTADNIRELL 341 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 68/362 (18%), Positives = 136/362 (37%), Gaps = 51/362 (14%) Query: 1 MNKKV-LTLSAVMASMLFGAAAHAADTR----------------------------IGVT 31 M KK+ L L+ V+A L + IGV Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 32 IYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 91 + S + + + + +V+L + D+Q+D + Q +QI +A+G + + V Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEEL-NVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPV 119 Query: 92 DPAAAGTVIEKARGQNVPVVFFNKEPSRKALD--SYDKAYYVGTDSKESGIIQGDLIAKH 149 + + + +P++ +++ S D +VG D E G QG+L+ + Sbjct: 120 QLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQL 179 Query: 150 WAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTA 209 L++G G R + + L++ E + + D + Sbjct: 180 LGDE----------GSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQS 229 Query: 210 QAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIP--VFGVDALPEALAL 267 QA +L+ +I+ ++A + A+GAV+A+K+ ++ + V G D E L Sbjct: 230 QAITVTQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDS 289 Query: 268 VKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 +K+ + G+ L + T +A +G+ N +P V + +N Sbjct: 290 IKAKDMYGSTLQAPYDMGALTLQVAYQCLT-----EGSEEIEANTYTEIPVVYI--ENAR 342 Query: 328 EF 329 E+ Sbjct: 343 EY 344 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 72/346 (20%), Positives = 134/346 (38%), Gaps = 41/346 (11%) Query: 5 VLTLSAVMASMLFGAAAHAAD------------------TRIGVTIYKYDDNFMSVVRKA 46 + +LSA L G A+ A +IG ++Y + + Sbjct: 1 MFSLSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAG 60 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 + A+ A +++++ D ++ Q +Q L+ +G+ AL I V P+A + I+ A G+ Sbjct: 61 VRAGAEEA-GIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGE 119 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV + D Y+ +++ E G + + + + G Q Sbjct: 120 KIPVVVADIGTEG------DYDGYILSNNYEGGRLAAEHVVEKLGGTP-------GPHQV 166 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 +++ G E R + + L ++ E + LS + Sbjct: 167 GVIELHAGSVVGEERVSGFVDRLGEEE-NFEIVSSLDGNDTVDGGFTAAQDMLSA--NPE 223 Query: 227 IEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGTVLNDANN 283 ++V+ A ND A+GA A++ S + G D AL L++ G ++GTV D Sbjct: 224 LDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQGVMSGTVAQDPFG 283 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 Q + + A L +G+ K + P V +N+AEF Sbjct: 284 QGQKAVETALALLNGEDPGYSDEAT---KTIYFPVEMVTAENVAEF 326 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 77/316 (24%), Positives = 125/316 (39%), Gaps = 28/316 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A A RIG + + + + K I +A PDV+L++ D ++ KQ ++ L Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + V AL ++ + A V+++A +PV ++ +++ +VG D+K Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRN-----VETDQYTQFVGGDNKLI 142 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIK-ELNDKGIKTE 197 G G+ + Q V + G G A R + + GIK Sbjct: 143 GRAAGEYAVELLGGK------GKAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKEPGIK-N 195 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVF 256 L + W QA + M L N KI++V +ND MA GA A K + I Sbjct: 196 LLDKQSGDWKQDQAYNIMATALR--NNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFI 253 Query: 257 GVDALP-EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 G+DALP E + V +G L T L A G+ K V Sbjct: 254 GIDALPNEGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKV---------EKTVT 302 Query: 316 VPYVGVDKDNLAEFSK 331 + + V ++N A+ K Sbjct: 303 LDTLKVTEENAAQIMK 318 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 83/348 (23%), Positives = 140/348 (40%), Gaps = 39/348 (11%) Query: 1 MNKK---VLTLSAVMASMLFGAAAHAAD------------TRIGVTIYKYDDNFMSVVRK 45 M K+ +L ++A+ A+M G +G N+ + R Sbjct: 1 MKKRLLSILMVTAMCATMAVGCGTADDTKDSSSSSKGKSDYLVGFANNSDTYNYCAKFRS 60 Query: 46 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 + +DA A + + + D+ D + QN QID + + ++ D + +E A+ Sbjct: 61 YL-KDATEAKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISNDLDGSIPALEAAKD 119 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 +P V F S D YD YVG+ ++++G QG+ + + Sbjct: 120 AGLPYVSFLTSVSGG--DDYDGYIYVGSPNEDAGKAQGEYLCDAFPDG----------AS 167 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 + G P R + + L K + L + L + Sbjct: 168 ILYFTGAPNDQQYVDRKKGLEEALK-KNPNIKILDEYNVENSKDLGMSTAEDSLLSY--D 224 Query: 226 KIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 KI+ ++ ND A+G VEALK+ K SI V G+D +AL ++ G + T L DA Q Sbjct: 225 KIDAIVCQNDDGALGVVEALKSAGKLDSIQVLGIDGSDDALQSIQDGEMTMTALQDAKAQ 284 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A+A D+ + L G AD + V +P+ V KDN+A++ K Sbjct: 285 AEAGADIFEKLKKGTDPADIED-------VNIPFKIVTKDNVADYLSK 325 >UniRef50_C5RPN7 D-galactose-binding protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RPN7_CLOCL Length = 347 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 89/330 (26%), Positives = 155/330 (46%), Gaps = 18/330 (5%) Query: 3 KKVLTLSAVMASML------FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 K +L + + ++ F + +GV ++ D++ + +K + P Sbjct: 9 KSILVMLLIFLLIITTEIQTFSSPISRRTINVGVILFSLDNSIAAQFKKEFDNLQNEYP- 67 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP--AAAGTVIEKARGQNVPVVFFN 114 V++ + + QN+ S Q++ +D LL + + A IE+ R N P+V FN Sbjct: 68 VKVSVLNPQNNVSVQDEMLDSLLKNNIDLIIAIPASTKEDAVRNFIERVRPYNTPLVMFN 127 Query: 115 KEPS--RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 P + Y +A + S ++G +QG+++ W D N D +Q+VL++G Sbjct: 128 IPPDVVKNISKDYARAAFAIPASDKTGEMQGEIVRDLWNNKSIIDKNDDNILQYVLVRGP 187 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 A+ RT V L GIKTE LQ W A AK ++ NKIE +IA Sbjct: 188 KEDVTADKRTQGVTSILESSGIKTELLQSFATNWTEAVAKSYIENIF-LTYGNKIEAIIA 246 Query: 233 NNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 N+D +A+GAV+ L+ + ++ IPVFG+ PEA+ L+ G ++GT++ D A+ Sbjct: 247 NDDDLAVGAVKGLQKYGYNTGSKSKYIPVFGLSGTPEAINLIDKGLMSGTIIVDLKKVAQ 306 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 + + NL + + TN K + V+ + Sbjct: 307 DLYAIGNNLINNANPTENTNLKSEGGVIII 336 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 74/333 (22%), Positives = 123/333 (36%), Gaps = 41/333 (12%) Query: 1 MNK-KVLTLSAVMASMLFGAAA-HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 MNK L+ + M+ + ++ IGV+ +D + + + ++ V Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCS-EDIWRDKLNQELQTATYMEDGVT 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 + + ++ +Q QI+ + GV L I+ A V++KA + +PV+ F+++ Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 K ++G D+ E G GD +A+ D + L G G A Sbjct: 120 GK------YTAFIGADNVEVGRQMGDYVARQL----------DYHGNVIELMGLKGSSPA 163 Query: 179 EARTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK---IEVVIANN 234 R I+ ++ GIK + W A + + A+ I V A N Sbjct: 164 IERHRGFIERISRYPGIKLV--ESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQN 221 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDL 291 D MAMGA EA S GVDALP + LV L+ + + L Sbjct: 222 DRMAMGAREA--GLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVMKL 277 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 A N+ N + K + V D Sbjct: 278 AMNIL---------NHRPYQKENLLQSALVTPD 301 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 131/312 (41%), Gaps = 33/312 (10%) Query: 4 KVLTLSAVMASMLFGAAAHA-----------ADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 +++ + V A+M+ GA A IG+ + +F + +++++ +AK Sbjct: 8 RIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAK 67 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 ++++++D++ D + Q +QI +++ V A+ AAG ++ A +PVV Sbjct: 68 KK-GIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVT 126 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 ++ P + S ++ +DS + G+ + K G+ Q +L+G+ Sbjct: 127 VDRNPPGEPGKS-----FIASDSVAAARTLGNYVVKE----------SGGKGQLAILQGQ 171 Query: 173 PGHPDAEARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G R + L N GIK Q A W +A L I+++ Sbjct: 172 IGTTPQVDRQKGFGQALKNAPGIKVVSQQ--PADWAQDKAYSVSQDMLQAHPG--IDILW 227 Query: 232 ANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 DAMA+GA +A+KA K + G D L V+ G + T++ + + + Sbjct: 228 GQADAMALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVN 287 Query: 291 LAKNLADGKGAA 302 A ++ GK Sbjct: 288 TAVDIIKGKKVP 299 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 131/333 (39%), Gaps = 31/333 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQL 59 M K++L SA++ + GAA +GV++ + + + ++ E AK PDV++ Sbjct: 23 MIKQLLMGSAILV-LAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKV 81 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + DS D +KQ +QID +A GV + + DP A I++A+ + V+ + Sbjct: 82 ITVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATD----- 136 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + V T++ ++G I I A G ++++ P Sbjct: 137 --VAAVGADATVQTNNVQAGEIACQYIVDKLGAAGGQ----------IIIQNGPQISSII 184 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R + K L + T + M L+ KI+ V D A Sbjct: 185 DRVSGCRKSLANNPKITILSDDQNGKCSRDEGMKIMQGHLTRHR--KIDAVFTVCDPQAT 242 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSG--ALAGTVLNDANNQAKATFDLAKNLAD 297 G+ A + ++ + VD P+ K G + + D A+ + + + Sbjct: 243 GSDLAAQQFGRNEFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMN 302 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 GK DN ++ +P + KDN+A++ Sbjct: 303 GKKP--------DNPMILMPSTLLTKDNVADYK 327 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 87/332 (26%), Positives = 142/332 (42%), Gaps = 32/332 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAI-EQDAKAAPDVQL 59 M L L++ +A ++ G A A + + + F + V + E+ A+ + + Sbjct: 1 MKLVKLFLASSLA-IIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVV 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 L ++D Q +Q++ + KGV A+AI + DP A VIE AR +PVVF + + Sbjct: 60 LSPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGIN 119 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 K + ++GTD+K + D I + +L+G + Sbjct: 120 KGV------TFIGTDNKAGAKMAADFICDRVSRGS----------DVAILQGIITQSTGK 163 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 AR L G+ A WD AQ + M+ L+ K++ V A+ND MA+ Sbjct: 164 ARADGAHAGLKGCGLNIV--AEQPANWDRAQGRTVMENILTR--NQKLKAVFASNDNMAL 219 Query: 240 GAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 GAVEALK + + + V G DA P+A + +G + T+ + N + A LA G Sbjct: 220 GAVEALKDADMLNDVIVVGFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKG 279 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + VV + V K N A+F Sbjct: 280 RSLP---------PVVDTGTLLVTKKNAADFK 302 >UniRef50_A6W806 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Actinomycetales RepID=A6W806_KINRD Length = 362 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 80/304 (26%), Positives = 139/304 (45%), Gaps = 29/304 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 R+GV++Y F++ ++ ++ A+A ++LL N + D + Q Q+D + GV Sbjct: 50 KKLRVGVSVYDMSS-FITAGKEGMDAYAEAK-GIELLWNSANLDVNTQASQVDQYVNAGV 107 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 A+ + V + + A+ +P++ N E L+S D A V D +G Q Sbjct: 108 DAIIVVPVQADSLQPQVASAKAAGIPLLAVNAE-----LNSTDIAGNVQPDDVAAGEAQM 162 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 ++A G+ V+L+G G RT I+ + K E L DT Sbjct: 163 QMMADAIG----------GKGGIVVLQGPLGQSGELNRTKG-IENVLAKYPDIEVLAKDT 211 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 A W +A +K+ W+S +I V+A ND M +GA++ALK + +PV G+D + + Sbjct: 212 ANWKRDEAVNKVKNWISA-FGARITGVVAENDDMGLGALQALKESGVT-LPVVGIDGIED 269 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 L VKSG GT+L + + A +A +A+G+ +K+ + K Sbjct: 270 GLNAVKSGEFIGTMLQNGTVELSAGLAVAAAIANGEDVNTEPVYKMP---------KITK 320 Query: 324 DNLA 327 +N+ Sbjct: 321 ENVD 324 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 29/303 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +G + + F + K +++ A A V+L+ D D + Q Q++ + +GV Sbjct: 58 EQIVVGFSNWSRSFEFYVDLEKGMQEVADAQ-GVKLITQDPNGDLAAQTKQVEDFITQGV 116 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 + + +D AA T E +P+V + A+ D A ++ +D+ G + Sbjct: 117 DGIVLCPIDSNAAVTEAETINQAGIPLVTTDI-----AVAGGDVASHIASDNTLGGQLAA 171 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 I + G + L+ P R T + K E + + + Sbjct: 172 QFIGEQLG----------GTGKVALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQS 220 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 + M+ L ++ V A ND M +GA++A++A + I + G DA E Sbjct: 221 GESKREKGLSVMENILQS--NPDVQGVFAVNDMMGLGALQAVQAAQRDDIVIVGFDATEE 278 Query: 264 ALALVKSGA-LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 A+ +K G+ L +V + K T + + G+ K + VP V Sbjct: 279 AVKYIKEGSALKASVAQNPVELGKTTMETMLKVIAGEQV---------EKNIPVPVELVT 329 Query: 323 KDN 325 N Sbjct: 330 AGN 332 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 16/295 (5%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 AA ++ IG + + + +I+ P+ L +D Q Q Q I Sbjct: 36 TSAANSSSKKIIGFAQVGAESGWRTAETDSIKSIPTLDPNFDLKFSDGQQKQENQIKAIR 95 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 +A+ V +A++ V TV+++A+ +PVV +++ + Y ++G+D Sbjct: 96 SFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVIVDRKVTVSDDSLYK--CFLGSDMV 153 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 G ++ + KD + L+G G R + D Sbjct: 154 AEGKKAAQILIDQF--------GKDATLNIAELQGTVGSTAMVGRQQGFNDAIKD-CPNY 204 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSI 253 + ++ T + A+ K+ M+A+L + +KI V+ ++ND MAMGA++A++ + K I Sbjct: 205 KIIKSQTGDFTRAKGKEVMEAFLKS-DGDKINVLWSHNDDMAMGAIQAIEEYGKKPGKDI 263 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 + VD + + + G TV + ++AKN+ DGK N K Sbjct: 264 FIVSVDGIKDIFQAMVDGKANATVECNP-LLGPQLLEVAKNILDGKEVERTINSK 317 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 71/309 (22%), Positives = 124/309 (40%), Gaps = 20/309 (6%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD---VQLLMNDSQ--NDQSKQNDQIDVLLAKG 82 I D F + + ++ A+ V+ D KQ I L+ Sbjct: 80 IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139 Query: 83 -VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 + L I D +IEKA Q + V+ + +D+ +V D+ E G I Sbjct: 140 DLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDT-----PIDTDQILTFVTFDNFEGGQI 194 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN--DKGIKTEQL 199 G+ + + + ++ +I ++L+G + R ++ L +K E L Sbjct: 195 LGEWVIQKLTQSS----RRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEIL 250 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVD 259 L +A W+T +AK AWL I+V++A +D MA+GA EA++ NKS I + G D Sbjct: 251 DLKSADWETKKAKMITQAWLEKF--PTIDVIMAADDQMAVGASEAVQEANKSGIIITGFD 308 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 P L +K+G + T+ Q L N + K ++ + + Sbjct: 309 GTPYGLNAIKTGQIDATINQLPRTQISLITQLMINSLE-KEQTTLPLCQLIGQEQTENSL 367 Query: 320 GVDKDNLAE 328 + +DN+ E Sbjct: 368 LITQDNINE 376 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 124/335 (37%), Gaps = 42/335 (12%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M L + + +L A + + IGV+ D + + + +E +A P++ Sbjct: 1 MKGNPLYILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEI 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L++ D+ D Q QI + K V L I+ + V +A +P + +++ Sbjct: 61 ELVVMDASQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKI 120 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +S + Y+G D+ E G G I+ G+ + + G G Sbjct: 121 -----NSDEYTTYIGADNYEIGRSIGMYISSLI----------KGETTILEIWGRRGSSS 165 Query: 178 AEARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 A R + + D +K +L W A +++ L + +++V A+ND Sbjct: 166 ATERHQGFVDAMSIDPNVKIRELD---GYWYKENAYEEV---LKLDSIEDVDIVFAHNDM 219 Query: 237 MAMGAVEALKAHNKS---SIPVFGVD---ALPEALALVKSGALAGTVLNDANNQAKATFD 290 MA+GA EA++ + S + GVD + V G L + Sbjct: 220 MALGAREAIEERDSSLVGHVEFIGVDGLLGGGLGVEAVAQGKLDASFYYPTG--GGVAIK 277 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 +A + G+ K + +DK N Sbjct: 278 VAWQILSGQAYT---------KKYALSTAMIDKTN 303 >UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=Bacteria RepID=XYLF_HAEIN Length = 332 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 80/337 (23%), Positives = 142/337 (42%), Gaps = 29/337 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L+ V A +F ++AH+ D +IG++I R A++ ++ Sbjct: 1 MKIKSALLTLVGALTVFSSSAHSKDLKIGLSIDDLRLERWQKDRDIFVNKAESM-GAKVF 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + D S Q QI+ ++ K + L I + VI +A+ + + V+ +++ + Sbjct: 60 VQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGIKVLAYDRLINNA 119 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 LD +YV D+++ G +Q I + + L+ G P +A+ Sbjct: 120 DLD-----FYVSFDNEKVGELQAKSIVAV-----------KPEGNYFLMGGSPVDNNAKL 163 Query: 181 RTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 V+ L G W +A M+ L+ N N ++ V+A+NDA Sbjct: 164 FRKGQMKVLDPLIASGKIKVVGDQWVDSWLAEKALQIMENALTA-NKNNVDAVVASNDAT 222 Query: 238 AMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A GA++AL A S + + G DA A+ + +G+ TV A ++A L Sbjct: 223 AGGAIQALSAQGLSGKVAISGQDADLAAIKRIVNGSQTMTVYKPITKLADKAAEIAVEL- 281 Query: 297 DGKGAADGTNWKIDNKVVRVPY-----VGVDKDNLAE 328 GK N +++N + VP + VDK N+ E Sbjct: 282 -GKNEKIEANAELNNGLKNVPAYLLDPIAVDKRNINE 317 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 27/329 (8%) Query: 5 VLTLSAVMASMLFGAAAHA----ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 + TL+ +++ F A A A I V+ Y +++ +E +AK +V+++ Sbjct: 8 MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +D Q KQ I+ + +GV + I D A V+ A + + VV ++ + Sbjct: 68 RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPVNGV 127 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + V D+ QG+ + K + + L+G PG A Sbjct: 128 P----EVIANVAADNLIGAQRQGEAVEKLFPQG----------ATIINLQGIPGDKTAND 173 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ V L+ + + TA ++ Q + L+G AN V++A ND A+G Sbjct: 174 RSKGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGL-ANPPTVIVAGNDDSALG 232 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A +A++A K I +FG D +AL V+ G L GTV Q + + + Sbjct: 233 AAQAVEARGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIR-- 290 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 T + V V V + NL + Sbjct: 291 -----TGARPATVDVLVSPVAITSKNLND 314 >UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AIY5_TSUPA Length = 366 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 39/342 (11%) Query: 7 TLSAVMASMLFGAAAHAADT--------RIGVTIYKYDDNFMSVVRKAI--EQDAKAAPD 56 A+ A+ L A+++ I + + + K + ++ A+ Sbjct: 16 LAVALGAASLTACNANSSQKSGDAGGGNTIALLLPESKTTRYEAFDKPLFEKKVAELCSS 75 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 ++ ++ D++KQ+ Q++ + G KA+ + V+ AG ++ A+ +PV+ +++ Sbjct: 76 CKVSYYNADQDEAKQSQQVETAITAGAKAIVLGPVNGDGAGGMVASAKNAKIPVIAYDRF 135 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + YY+ D+++ G IQG + G+ ++L G P P Sbjct: 136 IAGAD-------YYLSFDNEQVGRIQGKSLVDALG----------GRGNILMLNGAPSDP 178 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 +A + GI+ + D W +A+ + LS + I+ V A ND Sbjct: 179 NAAQFKAGARSVIGQSGIRV-IGEYDNPDWSPDKAQQFVTDQLSRNKPSDIQGVYAANDG 237 Query: 237 MAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 A G V AL S+ P+ G DA A+ + +G + TV +A ++A Sbjct: 238 QAGGVVAALTGAGVSADALPPITGQDAELAAVQRIVAGRQSMTVYKPIAIEANTAAEVAV 297 Query: 294 NLADGKGAADGT-------NWKIDNKVVRVPYVGVDKDNLAE 328 LA GK T +K + + P + V K N+A Sbjct: 298 ALATGKDVPTTTASGIQRSTFKDVSSYIFTP-IAVTKANVAS 338 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 136/353 (38%), Gaps = 42/353 (11%) Query: 1 MNKKVLTLSAVMA--SMLFGAAAHAA-------------------DTRIGVTIYKYDDNF 39 M+K++ + + ++ SML A + +G T+ + +F Sbjct: 16 MSKRLKSTAILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGNKDKITVGATLSDFTISF 75 Query: 40 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 + + + K +++ ++ D +D + Q +QI+ + +GV A+ IN V A Sbjct: 76 QAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFITQGVDAILINAV-SDAVEPS 134 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 ++KA +PV N+ + D +Y++G + SG + + +Q N Sbjct: 135 LKKAMEAGIPVFAVNRSIT----DENAYSYFIGANDTLSGEQMANCLLDMIEKDQMDSCN 190 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK--TEQLQLDTAMWDTAQAKDKMDA 217 + ++G G R +++KG L+ D + Sbjct: 191 ------ILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQN 244 Query: 218 WLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI--PVFGVDALPEALALVKSGALAG 275 L+ A +I+ ++ A+GA++A+++ ++ + + G+D E +K+G + G Sbjct: 245 MLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIYG 304 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 TVL D Q + + G + K + V +N+ + Sbjct: 305 TVLQDPAEQCEVGIKTI------ETYFFGDKDSLKEKFIETDLPMVTSENVND 351 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 144/351 (41%), Gaps = 47/351 (13%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD-------------------TRIGVTIYKYDDNFMS 41 M KK+L ++ ++ + A ++ ++ +T+ + FM Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 42 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE 101 + + ++ +AA ++ + D+ D +KQ QI+ +++ +A+ + T ++ Sbjct: 62 GMAENFKEVGEAA-GYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 102 KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +A +PV + S L + D ++ G ++ + + K + Sbjct: 121 EAHDAGIPVFVIHNNVSATDL----VTSLIHVDVRQGGELKMEQVIKDCGED-------- 168 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 + ++ G G + +K E + W A + WL+ Sbjct: 169 --AKIAIMTGTLGQDTTNQICGGY-DAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLAS 225 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLND 280 +I+ ++ NND MA+G V LK+ KS I V+G+DA E L V SG +A T+ D Sbjct: 226 --GKEIDAIVCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVD 283 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + + + F++ ++L GK + +VP V V K+N+ E+ K Sbjct: 284 SKAEIEKAFEMLEDLKAGKKV---------DAEYKVPSVLVTKENVKEYMK 325 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 63/283 (22%), Positives = 120/283 (42%), Gaps = 16/283 (5%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +G + + + + ++I+ A+ A ++L +D+Q Q Q I +A+ V Sbjct: 30 KPIVLGFSQVGAESEWRTANTESIKSAARDA-GIELKFSDAQQKQENQIKAIRSFIAQRV 88 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 +A + V + V+ +A+ +PVV ++ + K Y ++G+D E G G Sbjct: 89 DVIAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLY--VTFMGSDFVEEGRKAG 146 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 + + + G + V L+G G A R +E+ K + ++ T Sbjct: 147 RWLVEKMK-------DAKGDVNIVELQGTVGSAPAIDRKKGF-EEVVKADPKFKIIRSQT 198 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDA 260 + A+ K+ M+A+L KI V+ A+ND MA+GA++A++ I + +DA Sbjct: 199 GDFTRAKGKEVMEAFLKA-EGRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDA 257 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 + A + +G L TV K++ GK Sbjct: 258 VKGAFEAMMAGKLNVTVECSP-LLGPQLMAAVKDIKAGKTVPK 299 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 25/288 (8%) Query: 18 GAAAHAAD-TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 G A D IG + DD + + ++++ + +L+ D+ + + Q QI+ Sbjct: 16 GCAGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIE 75 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 LL G+ L ++ + VIEKA Q VPVV ++ S S YVG D+ Sbjct: 76 ELLRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTS-----SPYYTAYVGGDNY 130 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 + G G+ A G + + + G P A R ++ L + Sbjct: 131 QVGKTVGEYAAALLG----------GNGKMIEITGLPRSSPASDRHRGLVDALATR-PSI 179 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPV 255 ++ W AK ++ L P ++++ A N+ MAMGA E I V Sbjct: 180 RRVATLNGQWQKDIAKSELRKVL--PRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRV 237 Query: 256 FGVDALPEA---LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 GVD LP + +V G + T L + +A N+ + Sbjct: 238 IGVDGLPGQFGDIQMVYDGHITATALYPTG--GEEAARVAMNILQKQP 283 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 119/314 (37%), Gaps = 31/314 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 IG++ + + + I+ A P ++ D+ D +KQ ++ Sbjct: 40 CKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENY 99 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + + L I+ + V++KA Q +PV+ +++ A ++G D+ + Sbjct: 100 ITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDAYTG-----FIGGDNVQI 154 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G G +A+ N G V +KG G R + K + Sbjct: 155 GTEAGKYVAEKVLPNGG---------NVVEIKGLAGATPQAERNQGFATGIK-ANPKVKV 204 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFG 257 + + W + + +MDA L KI+VV A+ND MA GA A KA + + G Sbjct: 205 VATASGDWLREKGQAQMDALLKA--NPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIG 262 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +DALP + V+ G L T N K AK L + K Sbjct: 263 IDALPIPSGGIKAVEQGRLTATFTYPTN--GKEAIAAAKKLL--------VDCGTIEKTQ 312 Query: 315 RVPYVGVDKDNLAE 328 +P +DK N A+ Sbjct: 313 TLPTRLIDKTNAAQ 326 >UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMP8_9FIRM Length = 376 Score = 190 bits (482), Expect = 9e-47, Method: Composition-based stats. Identities = 89/368 (24%), Positives = 153/368 (41%), Gaps = 52/368 (14%) Query: 1 MNKKVLTLSAVMASM------LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M KK++ A ++ + A A +IG+++ + +E+ KAA Sbjct: 1 MKKKLVLAMAATMAITSCAVPVLADDAAAEGGKIGISMPTQSLERWNRDGSYLEEQFKAA 60 Query: 55 P-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 DV+L +D++ D +Q + I L++ GV L I +D A TV+++A +PV+ + Sbjct: 61 GYDVELTYSDNETD--RQVNDIQNLISDGVNLLVIAAIDGEALNTVMDEAADAGIPVIAY 118 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 ++ A+ +YY+ D+ G +QG + D D G+P Sbjct: 119 DRLIKSDAV-----SYYISFDNYTVGTLQGQYVIDTL----DLDNAGDKTYNIEFTAGDP 169 Query: 174 GHPDAEARTTYVIKELN---DKG-IKTEQLQLD-----TAMWDTAQAKDKMDAWLSGPNA 224 +A L D G + Q D TA WDT A ++M L+ A Sbjct: 170 ADNNAGYFFNGAYDTLKPYLDAGTLNVVSGQTDFDSVATAAWDTQTALERMQNILASYYA 229 Query: 225 N--KIEVVIANNDAMAMGAVEALKA--HNKSSIPVFGVDALPEALALVKSGALAGTVLND 280 + +++V + +ND+ A+G +A+++ K+ + + G D LA + G + TV Sbjct: 230 DGTQLDVALCSNDSTALGVTQAIESDYAGKNDVLITGQDGDEANLANIVDGKQSMTVYKA 289 Query: 281 ANNQAKATFDLAKNLADGKGAAD----GTNWKIDNKV----------------VRVPYVG 320 N+A T DLA+ + G D + W D + VP V Sbjct: 290 VANEAVVTLDLAEAMLKGDTIDDSLITNSKWDFDCAYDTESYETSEGHKCPSFLLVPTV- 348 Query: 321 VDKDNLAE 328 V KDN+ E Sbjct: 349 VTKDNMKE 356 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 131/315 (41%), Gaps = 34/315 (10%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIE----QDAKAAPDVQLLMNDSQN--DQSKQNDQIDV 77 + ++G +++ + +++ E + + ++ L M +Q D+ Q ++ Sbjct: 69 GEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVED 128 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 ++ K AL ++ + +EKA+ N+PV+ N + A +VG + Sbjct: 129 MINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIKNA------DIFVGPKAIM 182 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 +G + + I+K G+ + ++ G P A RT + + Sbjct: 183 NGELAAEWISKKIG----------GEGEVAIVIGMPKAFAARQRTLGFENWMKSNAAGVK 232 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 ++ A WD A+AKD + W+ ++ + NND MA+G EA+ A + I V G Sbjct: 233 IVEKQNADWDRAKAKDLAEIWIKKY--PNLKAIFCNNDVMALGVQEAVNASKR-DILVVG 289 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VD + EA ++ G + TV + + + ++A G+ +V+ P Sbjct: 290 VDGIKEAYESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLP---------RVIWTP 340 Query: 318 YVGVDKDNLAEFSKK 332 +D N+ E S+K Sbjct: 341 QALIDSTNVNEPSEK 355 >UniRef50_B1VWK1 Putative ABC transporter solute-binding protein n=7 Tax=Streptomyces RepID=B1VWK1_STRGG Length = 370 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 126/321 (39%), Gaps = 25/321 (7%) Query: 18 GAAAHAADTRIGVTIY-KYDDNFMSVVRKAIEQDAKA--APDVQLLMNDSQNDQSKQNDQ 74 G+ D +IG+ + + R IE+ ++ +++ D + Q Sbjct: 37 GSEKKGDDLKIGLLLPENQTARYEKFDRPIIEKKISELTGGKGKVTYANAKQDANAQAQH 96 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 +D ++ V AL + VD A I+KA+ +PVV F++ Y D Sbjct: 97 VDTMITNKVDALIVGAVDSKAIANSIKKAKDAGIPVVAFDRLAEGPI------DAYTSFD 150 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 ++E G QG + + +K V++ G P+A L+ G Sbjct: 151 NEEVGRAQGTALLEALG-------DKADGGTIVMMNGAITDPNAALFKKGAKSVLD--GK 201 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI- 253 + DT W A M+A ++ +KI+ V + ND MA G + ALK S + Sbjct: 202 VKYGKEYDTKEWKPENANANMEAAITALGKDKIDGVYSANDGMAGGIITALKGAGISPLP 261 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN-- 311 PV G DA + + +G +V + ++A LA G+ K+D+ Sbjct: 262 PVTGQDAELAGVQRIVTGEQFMSVYKSYPAEGIVAAEMAVALAKGEKLDSIATSKVDSAT 321 Query: 312 ----KVVRVPYVGVDKDNLAE 328 V VP V + KDN+ + Sbjct: 322 TKGIPTVLVPVVSLTKDNIKD 342 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 138/334 (41%), Gaps = 29/334 (8%) Query: 1 MN-KKVLTLSAVMASMLFGAAAHAADT-RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K++L + + L + A A D + + + + + K E+ A+ + Sbjct: 3 MKGKRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKL-GYE 61 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 ++ + D + ++ QID + +A+ ++ + + + KA +PV N E + Sbjct: 62 ADVSSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEIN 121 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++ L +++ + + A+ W + G ++V LKG P +A Sbjct: 122 QQGLAEAQLV----SNNAQGAALG----AQQWIKSVGDS------ARYVELKGAPSDNNA 167 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R+ + + + E++ D A WD Q +K + L I+ VI+ ND MA Sbjct: 168 ATRSNGY-ETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQA--NPDIDGVISGNDEMA 224 Query: 239 MGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA- 296 +GA+ ALK K + V G D P+A+ VK+G + TVL ++ +A Sbjct: 225 LGAISALKEAGKLDDVVVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVT 284 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G+ DG D + DN+ +++ Sbjct: 285 TGETGVDGEKQLFDC-------FLITSDNVDDYT 311 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 129/330 (39%), Gaps = 38/330 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD------------------------TRIGVTIYKYD 36 M KK++ L + ++ + IG + + Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 37 DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 96 ++ +++ +L+ D+Q Q Q + +++ V +AI V Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120 Query: 97 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW 156 TV+ +A+ ++PV+ ++ K D + +VG+D ++ G+ + + + Sbjct: 121 ETVLGEAKDADIPVIIVDRMI--KVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEK--- 175 Query: 157 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 K + V+L+G G RT + K L T + A+ ++ M+ Sbjct: 176 --GKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIK-KYDNFNILAQQTGEFTQAKGQEVME 232 Query: 217 AWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGAL 273 ++L N I+VVIA ND MA GA++ALKA K + + DA+ A + +G + Sbjct: 233 SFLKQY--NDIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDM 290 Query: 274 AGTVLNDANNQAKATFDLAKNLADGKGAAD 303 +V + + +LAK L + + Sbjct: 291 NVSVECNPLH-GPRVAELAKKLMNDEKVEK 319 >UniRef50_C4GL06 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GL06_9NEIS Length = 350 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 152/324 (46%), Gaps = 12/324 (3%) Query: 17 FGAAAHAADTRIGVTIYKYDDN----FMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQN 72 +G A+ + +T+ D F ++ + K P V+L + + N Q Q Sbjct: 30 YGEASAPISQEVKITVNSVDKPDSLEFQKLMNAGVLAAGKDYPTVKLKIEQAPN-QDAQI 88 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 QI A KA+ +N+ + A +++ + +PVVFF P ++AL Y + Sbjct: 89 QQIGQS-AADAKAIVLNIANNQAVIPLMKDLCAKKIPVVFFGASPDKRALADCPLDYDLR 147 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE---L 189 D +G++QG L+A+ + N D N DG IQ+ +K G R+ + + Sbjct: 148 GDDMTAGVVQGLLVAQAFKDNPAMDKNGDGTIQYAFMKATQGTEFTRDRSDWAVATMSSY 207 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 + ++ + A +D A ++AWL+ PN +K+EV++ NND A+ LK Sbjct: 208 PELARPVSEVMVSYANFDPALGLKNLEAWLANPNFSKVEVILTNNDDTAIAIANELKKRG 267 Query: 250 KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG--TNW 307 +IPV+G D L VKSG LAGT D A +A NL GK +G T++ Sbjct: 268 I-NIPVYGSDGGEVGLRAVKSGLLAGTARGDYQQWAHDAVRVAANLGLGKPPLEGLPTSY 326 Query: 308 KIDNKVVRVPYVGVDKDNLAEFSK 331 +++ + + P+VG+ N+ EF K Sbjct: 327 RMEERTIYPPFVGISAKNVDEFLK 350 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 115/325 (35%), Gaps = 37/325 (11%) Query: 10 AVMASMLFGAAAHAADTR----IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 + + L + + + IG + D + + ++ + P +L+ D+ Sbjct: 9 LLFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGAKLVYADAD 68 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 N+ + Q Q+ +L +G+ L I+ + ++E+ +PV+ +++ + Sbjct: 69 NNSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKTTSNL---- 124 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 YVG D+ + G + + G + + G PG R Sbjct: 125 -YTCYVGADNYQIGYMASQYLGNTI----------SGPANILEVMGLPGSSPTIERNKGF 173 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 L K + W A+ ++ N I+VV A+ND MA A Sbjct: 174 NDGLK-KFPNLKIKSQVYGDWMKPNAERQLSKI--SDQLNDIDVVFAHNDNMAFAAQSVF 230 Query: 246 KAHNK-SSIPVFGVDALPEA---LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 K S G+DA P A L ++ +G + ++L K A + D Sbjct: 231 KKLGIASQAKFIGIDATPGAGGGLQMISNGLIDASMLYPTG--GKEAITTAIKIMD---- 284 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNL 326 +K + +P + +D N+ Sbjct: 285 -----KIPFSKELILPSLVIDSSNV 304 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 126/307 (41%), Gaps = 30/307 (9%) Query: 29 GVTIYKYDDNFMSVVRKAIEQDAKAAP--DVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 + + + F+ + +++++A+ + D +ND + Q QI+ + GV + Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 I V ++ A V VV N+ S D +VG D++ +G + Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRIS----DQNAADTFVGADNESTGAALMKKV 117 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 + DG+ V L G G R+ L + + + D+A W Sbjct: 118 MEDL----------DGKGNIVELLGPMGSDGQVGRSKGFDSVLAE-YPDVKVIASDSADW 166 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEAL 265 DTA+A + WL+ + I+ V+A ND MA+GA +A+K I V+GVDA + L Sbjct: 167 DTAKALTLTENWLTSSD---IQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGL 223 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 + +G + GTV NQ K + DL NL G+ V K+N Sbjct: 224 NAIVNGGMTGTVSQGTENQGKISADLCSNLIYGQSVPKEVIATN---------VVYTKEN 274 Query: 326 LAEFSKK 332 + E KK Sbjct: 275 VNEILKK 281 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 134/339 (39%), Gaps = 29/339 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR---IGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M +++ + + +++L + + + + + + +E+ A PDV Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L+++D+Q D SKQ Q++ + + L + + AA V+ +A +PV+ ++ Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + Y+ +D+ G + G I H G V ++G G Sbjct: 121 LQP-----NYTSYIHSDNVAIGRLAGQFIVGHLTKKYG-----KPAGNVVAMRGLLGVEG 170 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R KE+ DK + + + A W A+AKD+M L KI+VV +ND M Sbjct: 171 EINRDRGA-KEILDKYPEIKIVADPVADWIQAKAKDRMTEVLRAQ--PKIDVVYGHNDPM 227 Query: 238 AMGAVEALKAHNK-SSIPVFGVDAL---PEALALVKSGALAGTVLNDANNQAKATFDLAK 293 A+GA K + + GVD L + V G LA T + ++ Sbjct: 228 AIGAYLGAKELGREKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYP--LWVDKAVEIGT 285 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + G ++ ++ V V +N + +K Sbjct: 286 RILREPGFVPAKDYVLE-------SVMVTTENAPQMYEK 317 >UniRef50_C7IGF5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=C7IGF5_9CLOT Length = 331 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 139/347 (40%), Gaps = 43/347 (12%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K+++++ ++ ++ F AA + + ++ D+F + + Sbjct: 1 MKKRLISVLSMSLAITFLAACGAGTPKTSDSTASGGSSSKGYKVAYIARAQSDSFAAWLA 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 A++ +AK PD++L + D Q + +N I+ + + + + A +EK Sbjct: 61 NAVKDEAKKYPDIKLDVFDGQANDDTENSMIENAITNKYDLVIVQPNNGEAQRPYVEKVV 120 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQI 164 + + N S + A V + E + + N Sbjct: 121 KAGIHAITTNARIS-----GIEGASSVDANPYEQAGVNARAAIEQIPQN----------A 165 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 + V+L G G+ A+ R KE +K + + A W+ +A M+ W+ Sbjct: 166 KVVVLDGPSGNFHADERRKSWQKEFFEKRPDVKIVGEQIANWNKDEAMKYMEDWIQS--N 223 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANN 283 +KI+ VI+ ND MA GA+E +K + K ++ +GVD EAL L++ G + T + A + Sbjct: 224 DKIDAVISMNDNMAAGAIEVVKDNPKFKNMLAYGVDGTAEALLLIQEGKMTSTCMQSAYD 283 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A + L G T+ + V+KDN+ ++ Sbjct: 284 LATKLLESGNKLLTGGEKQIDTD---------IGNPLVNKDNVQQYI 321 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 129/333 (38%), Gaps = 38/333 (11%) Query: 1 MNK-KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M + ++ + + +L A + IGV+ + V + Q +V L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGG-VWREKVNNEMRQAQYQYKNVDL 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 L ++ND Q QID ++A+ V + + + IE+A ++PV+ F+++ Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRK--- 116 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + +G D+ E+G +A DG+ V + G Sbjct: 117 --VKTPHYTASIGGDNVEAGREVARFLASKL----------DGKGTVVEITGLKDASPVI 164 Query: 180 ARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + N GIK L+ W +A++ M +L + V ++D A Sbjct: 165 ERHRGFHEVMKNYPGIKVVTLES---NWKLERAQELMKQYLD--KGGHADGVFGHSDLGA 219 Query: 239 MGA-VEALKAHNKSSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKN 294 +GA +EA + + + G+D LP E + VK G A + + Q + +LA N Sbjct: 220 IGAFLEAERRGIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYPT--QGEKIMELAMN 277 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 + GK +K DN + +N Sbjct: 278 ILQGKP------YKKDN---VMKSFLATPENCD 301 >UniRef50_C5RF54 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RF54_CLOCL Length = 301 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 94/283 (33%), Positives = 159/283 (56%), Gaps = 15/283 (5%) Query: 47 IEQDA-KAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVDPAA--AGTVIEK 102 +E K V+ +++N+++ Q+ I ++ + L +NLV+ +A +I++ Sbjct: 1 MEDIQDKNKDKVEFTFYNAENNEAIQDATISKVIRERTADLLMVNLVNKSAESVKKLIDE 60 Query: 103 ARGQNVPVVFFN--KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLN 159 A+ +PVV FN + + + SY+KA+ +G D +++GI+QG +I W +N+ D N Sbjct: 61 AKRYGIPVVLFNYLQPETVDIIKSYNKAFAIGLDERQAGILQGQIIVDMWNSNKAKIDKN 120 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL 219 KD +Q+++L+ RT I+ +N+ GIKT+QL L A WD A++ + A L Sbjct: 121 KDNTLQYIMLQASNEAVPLI-RTNSAIETINNAGIKTKQLALVNAKWDKELAREAISA-L 178 Query: 220 SGPNANKIEVVIANNDAMAMGAVEALKAHNKS------SIPVFGVDALPEALALVKSGAL 273 AN IE +I+NNDAMA+GA+EAL+ + + +I V G+DA+PEA LV G + Sbjct: 179 FLRYANLIEAIISNNDAMAIGAIEALQKYGYNTGNSSRNILVVGIDAIPEARELVNKGVM 238 Query: 274 AGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GT++ + N A+A +D+ NL + TN+K+ V V Sbjct: 239 TGTIIQEPRNTAEALYDIGMNLVTKGSHINNTNYKLAENGVEV 281 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 61/316 (19%), Positives = 117/316 (37%), Gaps = 29/316 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLMNDSQNDQSKQNDQID 76 ++ + I D F ++ IE AK P V++ + DS+++ + Q + Sbjct: 46 ASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQ 105 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 + V + I+ D A+ V+ A +PVV + DS + ++ TD+ Sbjct: 106 DAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDI-----GTDSGEYVSFISTDNS 160 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 G+ +A LNK +I + L + R + + +K + Sbjct: 161 GGAKKLGEYVADK--------LNKGDEIAQIALN--QARKNGVLRKEGFEEGIKEKLKEV 210 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + Q++ + ++ ++ + +++ +MGAV ALK N + Sbjct: 211 DFRQMEKVN--RDEGVRYTQDLITSY--PNLKCIFCHSEDPSMGAVTALKEINNDKCKIV 266 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G D PE + +KSG + T + D K DG K + V Sbjct: 267 GFDCSPEVVEAIKSGDILATAAQQPVFMGRTAVDCLKTHLDGGTP---------EKEISV 317 Query: 317 PYVGVDKDNLAEFSKK 332 + V +DN+ + K Sbjct: 318 DTLLVTQDNINDVYDK 333 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 19/303 (6%) Query: 10 AVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAI-EQDAKAAPDVQLLMNDSQNDQ 68 A+ A L G +G + + + +I E+ AK L+ D+Q Sbjct: 14 AISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKKTYDFLITDAQGQT 73 Query: 69 SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKA 128 SKQ I+ L+A+ V + + + +E AR +P+ ++E + + + + Sbjct: 74 SKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDREAAGRPGEHF--V 131 Query: 129 YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE 188 ++G+D G G+ +AK DG+ V L G G A R Sbjct: 132 SFLGSDFIAQGRRVGEWLAKA----------TDGKASIVELTGTAGSSVAIDRAKGFRNA 181 Query: 189 LNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH 248 + + + TA + A A M+ + + I V A+ND MA+GA++ALK+ Sbjct: 182 I-ATYPNMKIIATQTADFSRAAAVRVMENIIQAK-GSDITAVYAHNDEMALGAIQALKSA 239 Query: 249 NK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 + V +D AL + G L +V ++ F + GK Sbjct: 240 GMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPRF-GPLVFATMEEYFAGKKIPPRI 298 Query: 306 NWK 308 K Sbjct: 299 ILK 301 >UniRef50_C5RMK4 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RMK4_CLOCL Length = 353 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 162/350 (46%), Gaps = 26/350 (7%) Query: 1 MNKKVLTLSAVMASMLFG-----------AAAHAADTRIGVTIYKYDDNFMSVVR-KAIE 48 M + + + M +L A+ + I + +Y +++ M ++ K I+ Sbjct: 1 MKRLIRIFALFMILILIVMQTNNTKNSIFASENRKVANIAIGMYDFENPQMKSIQQKFID 60 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL-AKGVKALAINLVDPAA--AGTVIEKARG 105 K V + +N+ S Q +D LL + + I L +P + +I KA Sbjct: 61 IQNKNQDKVNFSFYNGKNNLSIQVAIVDSLLLNPTIDFMVIGLSNPPSDVIEDIIRKASL 120 Query: 106 QNVPVVFFNKEP--SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ 163 +N+P++ + +P + K Y K ++ E GI+QG+++ W N+ D NKD Sbjct: 121 RNMPLIMLDVDPKIASKLSKEYSKVVFLKGKQGEVGIVQGEILVDQWNNNKVMDKNKDNI 180 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 +Q+++LKG +P A R Y + +N+ GIKT++L L W AK +++ L Sbjct: 181 LQYIMLKGATDNPVANDRVKYSVSTINEAGIKTQELALRVVNWSKEIAKGTIESLL-LQY 239 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTV 277 A IE +IAN+D +A+GA+EAL+ + + I V G EA L+ G + GTV Sbjct: 240 AGSIEAIIANDDTIALGAIEALQKYGYNKGNKAKYIDVVGAGGSQEARDLIDKGFMTGTV 299 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP--YVGVDKDN 325 + QA+A + +A NL + TN+ I V V Y K N Sbjct: 300 NINYEAQAEAVYKIAMNLINNVSPIKDTNYTISEGFVVVTGSYSPYTKKN 349 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 62/304 (20%), Positives = 111/304 (36%), Gaps = 31/304 (10%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKA--APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +GVT+ + F V+ + E++AK DV++ + S D ++Q +QI+ +A Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + IN D +++AR V+ + D V T++ ++G I Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAIE------ADIDATVTTNNVQAGEISCQY 175 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 IA G+ V++ G P R +K L + A Sbjct: 176 IADRL----------KGKGNVVIVNGPPVTSV-IQRVDGCLKVLAKYPDIKLLSKDQNAE 224 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEAL 265 M L KI+ V A ND +G A + + GVD PEA+ Sbjct: 225 GSRDGGLRVMSDLLVTF--PKIDAVFAINDPSGVGVDLAANQAKRQDFFIVGVDGAPEAI 282 Query: 266 ALVKSGA--LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 + SG A T + + + ++ GK ++ + +P + K Sbjct: 283 EAIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKKP--------ESPNILIPAKLITK 334 Query: 324 DNLA 327 +N++ Sbjct: 335 ENVS 338 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 137/331 (41%), Gaps = 33/331 (9%) Query: 5 VLTLSAVMASMLFGA----AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 V T+ V ++LF + + + IG ++ + V+ + I+ ++ DV L Sbjct: 22 VATICIVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDV-LE 80 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 DS D Q Q++ + + V + IN VD G+ +EKA+ +PV+ + + Sbjct: 81 TRDSGMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNR 140 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + V +++ ++G + K K G+I F++ + + A Sbjct: 141 SFVDGT----VVSNNYQAGEQCAKDLMKR---------RKKGKILFLV---QSENKSAID 184 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + L G K E + ++ ++ L+ I+VV+A ND AMG Sbjct: 185 RIKGFKETLEKAGWKYENVGELECQGQLELSQPLVEKVLN--KTKDIDVVMALNDPSAMG 242 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A+ AL A + S + V+G D PEA ++ +A T K T ++ + DGK Sbjct: 243 AMAALDAEHMLSDVLVYGADGSPEAKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGK 302 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 K VP + KDN+ ++S Sbjct: 303 KT---------EKQCIVPVSLITKDNINDYS 324 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 136/334 (40%), Gaps = 35/334 (10%) Query: 3 KKVLTLSAVMASMLFGAAAHA------ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 K ++ L + M+FG ++ R G T ++ F V+ I++ +A D Sbjct: 12 KMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGD 71 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V L+ D D KQN+QI L+ + V A+ +N +D ++ A+ +PV+ + Sbjct: 72 V-LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAP 130 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 ++L + + +++ ++G++ + ++K + +LL+ Sbjct: 131 IYDESLVNCS----IASNNYDAGVLCAKDM-----------MSKRDHAKIILLE-HATAK 174 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 A R + + + + A M L ++VV+A ND Sbjct: 175 SAVERIQGFLDTI-ASNANYQVINRADCDGQIEIAMPTMKQMLK--ETPDVDVVMALNDR 231 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+GA+ A+++ ++ V+GVD P+ L+ +G + T + + AK L Sbjct: 232 SALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQKAKALL 291 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + K K + VP + +DN++ F Sbjct: 292 ENKKI---------EKKIEVPVELISRDNISNFE 316 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 123/308 (39%), Gaps = 30/308 (9%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 + G T ++ F V+ K+I + + D QL+ D D SKQ DQI+ ++ +G Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGD-QLITMDPAMDVSKQIDQINDMITQG 96 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 V+A+ +N VD +E + N+P++ F+ E D YVG+D+K +G + Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVK----DMNYVTAYVGSDNKNAGKVC 152 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 GD + K + + +L P R + K Sbjct: 153 GDDLVKRY----------PNGGKIAILNC-PTMNSINDRIAGFKSAIEGKNFTIV--AEQ 199 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 D + D L + I ++ ND A+GA+ A K+ +S I ++GVD P Sbjct: 200 DGKGDLQTSMKLADDILQSHS--DIVAIMGGNDPTALGALAACKSAKQSKILIYGVDGSP 257 Query: 263 EALALVKSGAL-AGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 +A + SG GT + +L + + + K V + Sbjct: 258 DAKKEIASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNV---------EKKTPVQTFLI 308 Query: 322 DKDNLAEF 329 +KDN++++ Sbjct: 309 NKDNVSKY 316 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 126/299 (42%), Gaps = 21/299 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAH--AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M KK S + A++L A+ A++ I + +D+ F + + AK Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKEL-GYD 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D +KQN I+ +A+ KA+ ++ D A+ +E+ + +P +++E + Sbjct: 60 TLVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 + + + +++ + + G+ A+ ++V L G +A Sbjct: 120 KTGI----AVTQIVSNNFQGAQLAGEKFAELMGDG----------GEYVELLGPESDTNA 165 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 + R+ L D + + + +A W +A +M++ L I+ VI ND+MA Sbjct: 166 QVRSEGFHDIL-DNFPEFKMVARQSANWSQTEAFSRMESILQA--NPNIKGVITGNDSMA 222 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSG-ALAGTVLNDANNQAKATFDLAKNLA 296 +GA AL+A + + + G D L + G + T++ A QA+ + A Sbjct: 223 LGAEAALQAAGRKDVFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYI 281 >UniRef50_C7Q046 Solute-binding protein n=4 Tax=Actinomycetales RepID=C7Q046_CATAD Length = 361 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 20/309 (6%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD--AKAAPDVQLLMNDSQNDQSKQNDQID 76 A + RIG+ + + K + + P VQ+ ++ D + Q Q+D Sbjct: 42 ATGSNSSVRIGILLPESKTTRYEAFDKPLLEAELQARMPGVQVDYYNAGQDATVQQTQVD 101 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L KG K L ++ VD + ++KA V VV +++ L YV D+ Sbjct: 102 TALTKGDKVLILDAVDSKSIQASVQKAHDAGVKVVAYDR------LAQGPVDAYVSFDNV 155 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 + G +QG + +N Q V++ G P P+A LN G Sbjct: 156 KVGELQGTALLAALGSNAATQ-------QIVMINGSPTDPNAAQFKQGAHSVLN--GKVK 206 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + DT WD A +M ++ A I V + ND MA G AL A N +P+ Sbjct: 207 IGKEYDTPNWDPNTANQEMAGAITALGAPNIHGVYSANDGMAAGIATALSAANL-HVPLT 265 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT--NWKIDNKVV 314 G DA +AL +++G T+ +A A D+A A G+ + + + Sbjct: 266 GQDAQLDALQRIQAGTQTMTIYKPYKPEATAAADVAVEFAQGRTPGNDLLPDKQTSGSGN 325 Query: 315 RVPYVGVDK 323 VP + Sbjct: 326 VVPSKLITP 334 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 71/321 (22%), Positives = 142/321 (44%), Gaps = 28/321 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAH---AADTR---------IGVTIYKYDDNFMSVVRKAIE 48 + +KV+ + AV+A +L G A A DTR +GV+ + + + ++++ Sbjct: 7 IFRKVIIVLAVLA-LLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVK 65 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 + L+ +++ Q Q + +++ V + + + TV+ +AR + Sbjct: 66 ETLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEI 125 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 PV+ +++ + K D +VG+D E G G + + + D Q+ V+ Sbjct: 126 PVILMDRKINVK--DESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRF----NDDQVNIVV 179 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+G G RT +E+ K L+ A + TA+ +++M L+ +I+ Sbjct: 180 LQGTAGTTAMFGRTQGF-EEIAAKHENWNILEQTNADFTTAKGEEEMRRLLNTY--PEID 236 Query: 229 VVIANNDAMAMGAVEALKAHNKS-----SIPVFGVDALPEALALVKSGALAGTVLNDANN 283 V+++ ND M GA+EA+++ ++ I V D +AL VK+GA+ V + Sbjct: 237 VLVSQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVECNPY- 295 Query: 284 QAKATFDLAKNLADGKGAADG 304 Q K ++ + L G+ Sbjct: 296 QGKYIEEIIQALETGQSIEKD 316 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 187 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 140/329 (42%), Gaps = 31/329 (9%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 ++ S ++ + + + + IG++ + + + + I +AK +++++ D+ Sbjct: 20 LILFSLIIIENIRMKNSDSVEYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKDA 79 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 D +KQ ID LL G+ L +++ D V+ KA VPVV ++ A++ Sbjct: 80 GGDTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVVSKAYKS-VPVVVLDR-----AVEG 133 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y+ + Y+G D+++ G G ++ ++G + + ++G R+ Sbjct: 134 YNYSVYIGPDNEKIGREAGKMVVDLLGNSEG---------RVIEIQGLLNSHPDIDRSKG 184 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + + + + ++ W +A+DK++ L I+++ A+ND MA+GA +A Sbjct: 185 FREAIK-QCDNIKIVRTVIGEWQKDEAEDKIEELLK--EDRNIDIIFAHNDYMALGAYKA 241 Query: 245 LKAHNKSSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 ++I + GVD L L LV G L GT K D A N+ + K Sbjct: 242 AYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFTCSTG--GKEAVDSALNILNKKKK 299 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 +K + K N+ E+ Sbjct: 300 IPKKIVLKSDK--------ITKSNVNEYL 320 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 61/324 (18%), Positives = 120/324 (37%), Gaps = 32/324 (9%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDVQLLMND 63 +L L + + L IGV+ +D + + + ++++ A D ++L+ Sbjct: 8 ILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEVLIRS 66 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 ++D KQ I+ + + V L ++ + A VIEKA Q +PV+ +++ + ++ Sbjct: 67 VKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATES-- 124 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YVG ++ + G G G+ ++G G R Sbjct: 125 ---YTAYVGANNYQIGKEAGLYAIGVL----------KGKGNIAEVRGTKGSTSDAERHK 171 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + L + + + + + A AK +M I++V A ND MA G E Sbjct: 172 GFVDALKNA-PEVQIVAETWGNFLQADAKTQMQQIFQEHPH--IDLVFAMNDPMAAGTHE 228 Query: 244 ALKAHNKSSIPVFGVDALPE-ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 A N + GVDAL + + +++ + + + +LA + + Sbjct: 229 AAMQFNGKIPFIIGVDALQQVGIQNIENSVQDASFIYPTG--GEKVIELAMKILHKQPFQ 286 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNL 326 VDK N+ Sbjct: 287 RENILNT---------TVVDKSNV 301 >UniRef50_A6TKU8 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKU8_ALKMQ Length = 328 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 141/344 (40%), Gaps = 40/344 (11%) Query: 1 MNKKVLTLSAV--MASMLFGAAAHAAD-----------TRIGVTIYKYDDNFMSVVRKAI 47 M KK++ L A+ + +ML G + A + R+ D+F + + AI Sbjct: 1 MKKKLIVLLAITLIMAMLAGCTSPANNGAGGDENGETVYRVAYVARTQSDSFAAWLANAI 60 Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN 107 ++A ++ + + D Q S QN I+ + A+ I + A + E+A Sbjct: 61 SEEADKYDNIIIDVFDGQASDSTQNSLIENAITSNYDAIIIQPNNGEAQKSYAEQAVAAG 120 Query: 108 VPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 + + N ++ A V D E + D+ + N V Sbjct: 121 IITITTNAR-----IEGVQGASSVDADPYEQAKVNADVALEQIPQN----------ANVV 165 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +LKG PG+ A+AR KE DK + + A W+ +A M+ W+ +KI Sbjct: 166 VLKGPPGNFHADARRDSWQKEFFDKRPDVTIVGEEIANWNKDEAMTYMETWVQA--NSKI 223 Query: 228 EVVIANNDAMAMGAVEALK-AHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 + +IA ND MA GA+E ++ N + + +GVD EA+ L++ G + T L A + A Sbjct: 224 DAIIAMNDNMAAGALEVVRDDSNFAGMLSYGVDGTAEAVLLIQEGVMTQTSLQSAYDLAT 283 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A D + L G + + ++ DN+ E+ Sbjct: 284 ALLDTSNKLLTGAETQID---------IDIDAPVINSDNVEEYV 318 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 126/346 (36%), Gaps = 39/346 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR-------------------IGVTIYKYDDNFMS 41 M + + +L + + I + + + F Sbjct: 1 MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60 Query: 42 VVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 100 +++ IE++A A V ++ S+ D +Q I+ LL+KG KA+ I + P I Sbjct: 61 EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120 Query: 101 EKARGQNVPVVFFNKEPSRKALDSYDKA--YYVGTDSKESGIIQGDLIAKHWAANQGWDL 158 +A + + VV +++ + L + +V TD+ + G + I Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEG----- 175 Query: 159 NKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW 218 + +++G+ G+ E R + K + + A WD ++A D Sbjct: 176 -----GEVAIIEGKSGNASGEFRRQGATEAFK-ADSKFKLVASQPADWDRSKALDVAANL 229 Query: 219 LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTV 277 + ++ + A ND MA+GAV+A+ K+ I V G D PEA + G L TV Sbjct: 230 IQKY--PNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATV 287 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 D + + K I+ K V V + K Sbjct: 288 AQDPAMIGATSLKILIEAIKDKPQISP---DIEAKEVPVESNLISK 330 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 64/324 (19%), Positives = 121/324 (37%), Gaps = 32/324 (9%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDVQLLMND 63 +L L + + L IGV+ +D + + + ++++ A + +LL+ Sbjct: 17 ILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTELLIRS 75 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 ++D KQ I+ + + V L ++ + A VIEKA Q +PV+ +++ + ++ Sbjct: 76 VKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATES-- 133 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YVG ++ + G G G+ ++G G R Sbjct: 134 ---YTAYVGANNYQIGKEAGHYAIGIL----------KGKGNIAEVRGTKGSTSDAERHK 180 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + LN+ + + + A AK +M I++V A ND MA G E Sbjct: 181 GFVDALNNA-PEVRIVAETWGNFLKADAKVQMQQLFQQH--PNIDLVFAMNDPMAAGTHE 237 Query: 244 ALKAHNKSSIPVFGVDAL-PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 A N + GVDAL E ++ +++ + + + DLA + + Sbjct: 238 AAMQFNGKIPFIIGVDALQQEGISNIENNVQDASFIYPTG--GEKVIDLAMKILHKQPFE 295 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNL 326 VDK N+ Sbjct: 296 RENILNT---------AVVDKSNV 310 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 122/326 (37%), Gaps = 20/326 (6%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQL 59 MNK + S + ++ +A AA V + + F ++K IE +AK V + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAA-AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + S+ D Q + L K K +A + + +A + + +V +++ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 120 KALD--SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 L + +V TD+ G I A G + +++G+ G+ Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGG---------EVAIIEGKAGNAS 170 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 EAR + K + + + A WD +A D L I+ + ND M Sbjct: 171 GEARRNGATEAFK-KASQIKLVASQPADWDRIKALDVATNVLQR--NPNIKAIYCANDTM 227 Query: 238 AMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 AMG +A+ K+ + V G D +PEA +V++G + TV + + L + Sbjct: 228 AMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDA- 286 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVD 322 + + + V + V Sbjct: 287 --EKSGKVIPLDKAPEFKLVDSILVT 310 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 66/310 (21%), Positives = 120/310 (38%), Gaps = 30/310 (9%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 + G ++ F +++AIE+ D +L++ D+QND KQ ++ LL Sbjct: 62 NGGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGD-ELIVIDAQNDAQKQISMVEDLL 120 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 +G+ L + +D A+ + +E+ VPVV F+ + L + + +D+ +G Sbjct: 121 TQGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVN----TIIVSDNYYAG 176 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 + + + K + +L P R + D K Sbjct: 177 ELVAEDMMKKLPEGS----------KVCILT-SPSAEACIKRQNGFKDK-ADGYFKIV-- 222 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVD 259 DTA + + L G + A ND A+G V+AL++ K+ + V+GVD Sbjct: 223 SEIDGKGDTATSLGIAEDVLQG--NPDLGAFYAINDPSAIGCVQALESQKKTDVLVYGVD 280 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 P + G + T N K + A + G+ K + VP Sbjct: 281 GQPMGKQAISEGTMEATAAQSPINIGKESVAAAYKILSGESV---------EKNILVPTF 331 Query: 320 GVDKDNLAEF 329 +DK+N+ E+ Sbjct: 332 LIDKNNVTEY 341 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 27/316 (8%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQID 76 A+ + D IG ++ + + + +A+A +++ D Q I+ Sbjct: 64 AASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIE 123 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDS 135 ++A V + + + + K + +P++ + + + ++L + + GT++ Sbjct: 124 NMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYGTNN 183 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 E + G+ +AK++ + +LKG G +A R I+ G Sbjct: 184 YEGAKLAGEYVAKNFEKGT----------KTAILKGIEGQTNAADRYNGFIE---GAGDT 230 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIP 254 + TA W+ Q +S +E+ ND M +GA+ A+K N + I Sbjct: 231 VTVVAEQTANWEVDQGYTAAQNIISA--NPDVELFFCCNDNMGIGALRAIKEANMQEQIQ 288 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 + G DA+ EAL LV++G TV K D + DG A + Sbjct: 289 IIGFDAVSEALNLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEA---------ESYI 339 Query: 315 RVPYVGVDKDNLAEFS 330 + KDN+ EF Sbjct: 340 DTGTEVITKDNVGEFK 355 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 125/314 (39%), Gaps = 25/314 (7%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVL 78 +IGV I + F ++ E+ A+ ++++ D+++D Q D ++ + Sbjct: 84 PKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTM 143 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYY--VGTDSK 136 + G A+ ++ +D I A +PV+ +AL + + + Sbjct: 144 VTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFE 203 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 E G + + + + +L G G + RT K + + Sbjct: 204 EQGSTVANDMISRM----------EDGGKVAILAGLEGAGQSVGRTNGA-KTVFENTEGV 252 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 E + WDT +A + L+ ++ + A ND MA+ AV+AL+ + V+ Sbjct: 253 ELVAAQACDWDTEKAYEATKDILTAH--PDLKGIFACNDNMALAAVQALQEMGNKDVMVY 310 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVD +A A ++ G + G++ + KA ++A + GK D V + Sbjct: 311 GVDYTTDAKAAIEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDP---------VYL 361 Query: 317 PYVGVDKDNLAEFS 330 P V +DN+A+F Sbjct: 362 PLTLVTQDNVADFE 375 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 63/284 (22%), Positives = 117/284 (41%), Gaps = 20/284 (7%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 + +G + + ++ K+I+ +A+ VQLL D QN + Q + ++ + KGV Sbjct: 45 EIVVGFSQTGAESSWRIAHSKSIQAEAEKR-HVQLLFADGQNVHNNQVNAVNGFITKGVD 103 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 + I + +++A+ +PVV ++ + D Y+ D G G+ Sbjct: 104 VIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEE-DLYETVMV--ADFVWEGRRAGE 160 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 +AK +G+ + + L G P A R T + + K + + + Sbjct: 161 WLAKQ----------TNGKARIIELVGTPAADVAVMRKTGFAEAI-AKHPDMKIIASQSG 209 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDAL 261 + + K M+ LS +I V A+ND MA+GA++A++A I V +DA+ Sbjct: 210 DFTRTKGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAV 268 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 A + G L TV + + FD + G+ T Sbjct: 269 KPAFEAMMEGKLNATVECNPMH-GPLLFDTIDKIVRGEKVPKRT 311 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 123/324 (37%), Gaps = 23/324 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA-KAAPDVQLLM 61 + + +AV+A++ +G A I + + F + I A K ++ L Sbjct: 2 RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 S+ D Q + LL + +AL + ++ +++A QN+P+V + Sbjct: 62 VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121 Query: 122 L--DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 L + A+ + +D++ +G + + + ++++G G+ Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFS--------GKVLVIEGLAGNVTGA 173 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 AR + L + + WD +A + + L + + ND MA+ Sbjct: 174 ARRDGFTERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRH--PDLAAIYCANDTMAL 231 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GAVEA+ A K + V G D +A+ +++G L +V + + G+ Sbjct: 232 GAVEAVFAAGK-KVLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290 Query: 300 GAADGTNWKIDNKVVRVPYVGVDK 323 + + VP + +DK Sbjct: 291 QV---------DPKIIVPTLVIDK 305 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 65/329 (19%), Positives = 136/329 (41%), Gaps = 29/329 (8%) Query: 7 TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN 66 L A++ + F + H IGV+ + F + + I++ + V + ++ Sbjct: 20 LLPAILPACGFSESHH--KLTIGVSYPTANSPFWNAYTRFIDEGSHQL-GVYINAVSAEE 76 Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL--DS 124 D+ KQ ++ L+ +G+ L + + A T++ A N+PVV ++ P + Sbjct: 77 DEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKN 136 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 D ++G +++++G + + G +F+ L G PG+ A+ R Sbjct: 137 ADYVAFLGPNNEKAGSGIAEALMA------------GGGSKFLALGGMPGNSVAQGRKAG 184 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + L G + Q Q A + + L A + ND + GA++A Sbjct: 185 LESALTAVGHRLVQFQY--AGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKA 242 Query: 245 LKAHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 + N+ +F G+D P+A+A +++G + L + + G+ A+ Sbjct: 243 VYNANREKEFIFGGMDLTPQAIAAIENGLYTVS-LGAHWLEGGFGLAILYRKIHGQDPAE 301 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 ++V++ + VDK N+A+F + Sbjct: 302 --------RMVKLDLLKVDKSNVAKFKAR 322 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 119/326 (36%), Gaps = 29/326 (8%) Query: 7 TLSAVMASMLFGAA-AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP---DVQLLMN 62 L+ + + A +IG+ + + F ++ E+ A+ D Sbjct: 33 LLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGI 92 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 + + D + Q + L+ + + + D A + KA + V+ + Sbjct: 93 NDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATK 152 Query: 123 DSYDKA-YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 + + G D++ + G+++AK A + +L+G P +A R Sbjct: 153 KAAGIDLAFFGPDNRAGAKMSGEVLAKALGAG----------GKVAVLEGNPEADNAVQR 202 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + D + + + W+T++ + AWL ++ ++ ND+MA GA Sbjct: 203 RLGFDDAIADGSLNLVVAE--SGHWETSEGQSITAAWLKKY--PDLQGIMCANDSMAFGA 258 Query: 242 VEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 V+AL+A N I V G D +P L+K G + TV A D G+ Sbjct: 259 VQALEAANLLDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEK 318 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNL 326 + +R + KDNL Sbjct: 319 F---------SGWIRTELKLITKDNL 335 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 117/310 (37%), Gaps = 24/310 (7%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 ++TRIG+T+ N + A + + D Q D + Q DQI + ++ + Sbjct: 57 SETRIGITVLYPGSNSYQAMYAETAAAYAAELGIMATVMDPQGDPAIQFDQIQDMASQNM 116 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 A+ + A I A +P++ N + G D Sbjct: 117 DAIVVWPTSQNALIPAIRDASRSGIPIITSNSPIGEAGRRYILG--HTGPDDCALAEQAA 174 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 +++ G+ V+++G PG+ + R + +L D L T Sbjct: 175 EMLGSAIG----------GEGNIVVVEGTPGYSVSILRGNCFLDKLADDFPDVNVLDSQT 224 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS--SIPVFGVDAL 261 A W+ +A+ M+ +L+ ++I+ V A +D MA+G V AL+A +S + + + Sbjct: 225 AEWNREKAQTVMETFLTR-FGDQIDGVYAFDDGMALGVVSALQAAGRSAGDVKIVSCNQF 283 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 E +K G ++G+ + A A +A+G + + Sbjct: 284 GEGWDAMKEGWISGSGKQSPIDDAILAIQTAVRVANGIEVPALQEIERAQ---------I 334 Query: 322 DKDNLAEFSK 331 +N+ EF + Sbjct: 335 TAENVDEFER 344 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 132/333 (39%), Gaps = 36/333 (10%) Query: 5 VLTLSAVMASMLFGAAAHAADTR------IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 +L L+A +L G A R G T ++ + V+ + IE+ +A D+ Sbjct: 7 LLILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDI- 65 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 LL D DQ KQN+QI ++ +G++ L +N VD ++ R V ++ + Sbjct: 66 LLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVK 125 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 D + TD+ ++G + + K + + + V+L P Sbjct: 126 ----DRDSVISIIETDNYQAGQLCALDMMK-----------RKDEAKIVILD-NPIQTSI 169 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + D + + + A + + M L +V++ ND A Sbjct: 170 TNREQGFLDTIADNH-NYQVVYREAAAGEIEVSSHVMADLLRR--DISFDVILGGNDPTA 226 Query: 239 MGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +GA+ AL+ + + ++G+D P+ A++ G + GT + + + A D Sbjct: 227 LGALAALQQARREEGVLIYGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLD 286 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G+ K + +P + +DNL EF Sbjct: 287 GEPV---------EKYISMPSTMITRDNLHEFE 310 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 137/340 (40%), Gaps = 30/340 (8%) Query: 1 MNKKVLT--LSAVMASMLFGAAAHAADTR-IGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M ++++ +++V + A A + + IG ++ +D ++ K E+ A A Sbjct: 6 MGRRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEA-GC 64 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +++ D ++D S Q ID +A+GV + + ++K +P+V ++ Sbjct: 65 KVIFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRM 124 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 V D +SG I G+ K G+ V+++G PG Sbjct: 125 QTHG-QPIKWEALVSWDMVKSGTIGGEQTVKAIG----------GKGNIVVVEGTPGAGS 173 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R + + +K + L A ++ A+ ++ + L +I+ + D M Sbjct: 174 TIDRGNAFYEVI-EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEM 232 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 G ++A+KA + + VD EA+ L+++ + + ++QA + ++ Sbjct: 233 TFGGLQAIKAAGRLGEFKIISVDGQKEAMDLLRAREIDYEAIFHPDDQA-VAVRILCDIV 291 Query: 297 DGKGAADGTNWKIDNKVVR------VPYV-----GVDKDN 325 +G+ D N + + + +P+V VDK N Sbjct: 292 NGRTP-DLANQTYEGRKMDLVEFEGMPWVRPTVYAVDKSN 330 >UniRef50_A9KQP6 Putative solute-binding component of ABC transporter n=4 Tax=Clostridiales RepID=A9KQP6_CLOPH Length = 355 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 69/315 (21%), Positives = 130/315 (41%), Gaps = 22/315 (6%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 + +D +GV + D + +E+ K A ++ + + ND Q QI+ Sbjct: 24 ATSGKGSDKLVGVAMPTKDLQRWNQDGSNMEKQLKDA-GYEVDLQYASNDVQTQVSQIEN 82 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 +++ G K L I ++ + GTV+ +A+ + + V+ +++ ++S +YY D+ Sbjct: 83 MISNGCKLLVIASIEGDSLGTVLAQAKKKGISVIAYDRLI----MNSDAVSYYATFDNYM 138 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGI 194 G QG+ I + G + G+PG +A V+K D G+ Sbjct: 139 VGTKQGEYIKEKLNLETA-----KGPFNLEIFTGDPGDNNARFFYGGAMDVLKPYVDGGV 193 Query: 195 KTEQ------LQLDTAMWDTAQAKDKMDAWLSGPNAN--KIEVVIANNDAMAMGAVEALK 246 + ++ TA W T A+++MDA ++ A+ K++ V+ +ND+ A+G AL Sbjct: 194 LVVKSGSVAFEKVATAGWSTETAQNRMDAIIASYYADGTKLDAVLCSNDSTALGVTNALT 253 Query: 247 AHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 A K P+ G D + + G + ++ D A + + G A Sbjct: 254 ASYKGEWPIVTGQDCDIANVKNMLDGKQSMSIFKDTRTLASQVVKMVDAIMKGGEAPVND 313 Query: 306 NWKIDNKVVRVPYVG 320 DN VP Sbjct: 314 TKSYDNGNGIVPSYL 328 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 68/335 (20%), Positives = 130/335 (38%), Gaps = 38/335 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAA------HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M +K L L L G + A + + + + F VR + A Sbjct: 1 MLRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANEL 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 + L + D+ +D Q Q+D ++ GV +N D A + + + +P + + Sbjct: 61 -GIDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVD 116 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 + + D A + +++ E G ++AK A Q + ++L+G G Sbjct: 117 RTIT-----GADVAALIDSNNTEGGAAAASVLAKAIRA----------QGEVIVLRGIEG 161 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 + R + + + + + + A +D A+D + L+ + + + A N Sbjct: 162 SSSSAERYEGFTQAMAEH-PRVRIVAAEAADFDRDTARDLVTDLLA--DHPDVAGIFAEN 218 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 D MA+GAV+AL + V G D E + VK+ L T+ ++ + A Sbjct: 219 DEMALGAVDALGERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGK 278 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 L DG+ A V P + V +DN+ ++ Sbjct: 279 LLDGEAAES----------VHTPVMVVTRDNIEKY 303 >UniRef50_B1ZDA2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZDA2_METPB Length = 308 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 86/322 (26%), Positives = 141/322 (43%), Gaps = 26/322 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M ++ L A + + A A AA+T++ + + D F+ ++ A+ A + + Sbjct: 1 MKQRTNPLPAALLLIALAAPAAAAETKLTFLMPEAGDRFLDSLQSAVVSTAASKFSASVE 60 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + Q Q L AL + VD A+A T+ E + +P+VF N+ PS Sbjct: 61 VAQAAGKGETQVVQARAALDAKPAALIVTPVDDASARTITEMSAAAGIPLVFVNRRPSGP 120 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + + V + +G +Q ++A+ +L+G+ A+ Sbjct: 121 VTN---RMAIVSANHLVAGRVQMRMLAQRLGDR----------GNVAILRGKDSDNAAQE 167 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT V KE+ + + L +A W QA+D++ AWL K + + ANND MA+G Sbjct: 168 RTAGV-KEILGQRPGLKLLAEASADWSRRQAQDQVTAWLRS--GLKFDAIAANNDEMALG 224 Query: 241 AVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 AV ALKA S I V GVD + +A VKSG ++ +VL DA Q + A LA G+ Sbjct: 225 AVAALKAAGLSGKILVGGVDGTSDGIAAVKSGDVSVSVLQDAPLQGAQAVNDAVKLARGE 284 Query: 300 GAADGTNWKIDNKVVRVPYVGV 321 VP+ + Sbjct: 285 YVQ---------PYDWVPHQLI 297 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 29/312 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 +IG T Y++ F SV+ + I + K D QL+ DS KQ +QI L+ + Sbjct: 40 STEPRKIGATYMTYNNTFYSVINEEISRILKEHGD-QLIALDSAMSLKKQKEQIHYLIEQ 98 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 V A+ I VD +++A +PV+ + E + + Y + +D+ ++G+ Sbjct: 99 QVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKH----NKNITYSIVSDNYDAGVQ 154 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + + VLL+ R + + ++ Sbjct: 155 CAKDMMRKL-----------DHANIVLLQHSTTRS-GYLRIKGFEDTI-QSNENYKVVKR 201 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 260 A KM++++ + +VV+ ND AMGA+ AL ++N V+G+D Sbjct: 202 MECDGQLEVAMPKMESFIE--EGIEFDVVMCLNDPSAMGAMAALSSNNILKDKYVYGIDG 259 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 PEA +V G +A TV K ++ L + I NK P Sbjct: 260 TPEAKEMVVEGKMAATVAQSPKTFGKKAGEVIYKL--------FSQETIKNKNEMSPVQI 311 Query: 321 VDKDNLAEFSKK 332 + K+N+ ++S + Sbjct: 312 ITKENVQDYSTE 323 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 124/316 (39%), Gaps = 29/316 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A +G + + + ++I+ +A+ + L D+Q++ Q + Sbjct: 15 CTVSQAKLTVGFAQTGSESVWRAANSESIKSEAEKQ-GIDLRFVDAQSNVDNQMKALRSF 73 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 +A V A+ + + + V++ A+ +PV+ +++ D A ++G+D + Sbjct: 74 IADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKI---VADPSLYATFIGSDFFKE 130 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK-TE 197 G + + I H D + + V L+GEPG A R + Sbjct: 131 GQMAAEWILAHA----------DQKRKIVELQGEPGSSAANERQRAFASTMATHTSDGFR 180 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIP 254 + A + Q + M L+ + IE+V A+ND MA+GA+EA++A +S I Sbjct: 181 IVARKVANFRRDQGRQAMAELLTTH-GSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIM 239 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V +DA+ A+ V SG L TV + + L G T K Sbjct: 240 VVSIDAIKTAVEAVASGKLNCTVECNPLF-GPKVIEAVVRLTSGGTVMKETFNKD----- 293 Query: 315 RVPYVGVDKDNLAEFS 330 + +D N A+ Sbjct: 294 ----IVIDASNAAQLL 305 >UniRef50_C5V3A4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V3A4_9PROT Length = 303 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 125/328 (38%), Gaps = 40/328 (12%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 +VL L+ + ++ A + I ++F + + P + + +D Sbjct: 8 RVLLLAFCLPAV------AAENKVIAFAQDTMANDFRRAQVYEVRDEVARYPQLSFVYSD 61 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 +Q S QI+ + + V L + D A V+ KA +PV+ ++ + K Sbjct: 62 AQGQTSLLIRQIEQFIEQKVDLLVLGTNDEQAVVPVVTKAYQAGIPVIVLDRGINGKQF- 120 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 ++ +D+ G I + IA +G+ +L +G + R+ Sbjct: 121 ----TSFINSDNIRIGEIGAEYIASRL----------NGKGLVLLFEGLQKADVTQLRSK 166 Query: 184 YVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + E+ GI+ + T + A +M+ +S + +++ + + +D+M G Sbjct: 167 GFLTEIGKHSGIRVIRR---TGNYLRKDAVVEMEKLVS--DGIRVDAIFSESDSMLSGVR 221 Query: 243 EALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 L N S+ + G D EA ++ G +G+VL K ++A + G+ Sbjct: 222 MVLSKSNIDPRSVVMVGCDYTSEARQAIRDGTQSGSVLFPLG--GKKAVEIALKIFAGES 279 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K + P V KDN+ + Sbjct: 280 VP---------KHIYNPVKLVTKDNVEQ 298 >UniRef50_Q11DN9 D-xylose ABC transporter, periplasmic substrate-binding protein n=50 Tax=Bacteria RepID=Q11DN9_MESSB Length = 347 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 88/337 (26%), Positives = 147/337 (43%), Gaps = 35/337 (10%) Query: 7 TLSAVMASMLFGAAAHA----ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 T +AV+A + F + + IGV+ + + AI+ +A + + Sbjct: 4 TATAVLAGIAFSLSLSSAALAEGKTIGVSWSNFQEERWKTDEAAIKAQIEADGN-TYISA 62 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D+Q+ +KQ ++ L+A+G AL I D +A G +E A + +PV+ +++ Sbjct: 63 DAQSSPAKQLTDVESLIAQGANALIILAQDASAVGPAVENAVAEGIPVIGYDRLIENPD- 121 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE--- 179 A+Y+ D+KE G +Q + + +V +KG P+A+ Sbjct: 122 -----AFYLTFDNKEVGRMQARAVFEVAPE-----------GNYVFIKGSSADPNADFLF 165 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 V+KE D G + T W A A+ M+ +L+ N N++ V+A+ND A Sbjct: 166 EGQMEVLKEAIDSGKIKNVGEAYTDGWLPANAQRNMEQFLTA-NNNEVAAVVASNDGTAG 224 Query: 240 GAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 GA+ AL+A + +PV G D AL + G +V DA KA +A LA+G Sbjct: 225 GAIAALEAQGLAGSVPVSGQDGDHAALNRIALGTQTVSVWKDARELGKAAAQIANQLAEG 284 Query: 299 ---KGAADGTNW-----KIDNKVVRVPYVGVDKDNLA 327 T W K++ V + V + KDNL Sbjct: 285 TAMDQVEGATKWAEGPNKVEMNSVFLKPVPITKDNLN 321 >UniRef50_Q2RXU3 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Proteobacteria RepID=Q2RXU3_RHORT Length = 334 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 81/320 (25%), Positives = 131/320 (40%), Gaps = 32/320 (10%) Query: 27 RIGVTIYKYDDNFMSVV-RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 RI V +Y F+ ++ R E A A ++ D + D + QNDQ + + A Sbjct: 29 RIAVLMYGNKAEFVQLMERYGKEHPAVKAGIAEVTFYDGRYDAAVQNDQAQMAINTKQDA 88 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + +N +D A + A+ +PVV N + + V +D G ++ Sbjct: 89 IVVNPMDYEANIDIATNAKMAGIPVVVTNARLNTDEM-----TAEVVSDDVLGGYLEAKD 143 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND-KGIKTEQLQLDTA 204 + + V+++G G R K L + + L+ TA Sbjct: 144 VLTKLG----------CKGNVVIIEGPKGGSGEIQRGQGNEKALAECPAGAVKVLERKTA 193 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH--NKSSIPVFGVDALP 262 W A+A D M WLS KI VI ND MA+GA+EA+KA N + G+D + Sbjct: 194 NWSRAEALDLMQNWLSKHPG-KINGVIGQNDEMALGAIEAIKAADLNVKDFAIAGIDGVT 252 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG----AADGTNWKID-------N 311 +AL VK+G + ++L DA Q + + D+A G + +K D + Sbjct: 253 DALHAVKAGEMT-SILQDARGQIQGSIDVALRAVKGPDYKPMSPIWEQYKADLAWADGQS 311 Query: 312 KVVRVPYVGVDKDNLAEFSK 331 K +P+ V N+ E K Sbjct: 312 KRYDIPWTVVTTANVDELLK 331 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 131/318 (41%), Gaps = 23/318 (7%) Query: 1 MNKKVLTL---SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 MNKKVL + +AV ASM G +A IG ++ ++ + K E Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L + D ND +KQ + + + +G+ + I + A TV+++A+ +PV+ ++E Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 D+ +VGT + G+ G+ +A+ + + + ++G G Sbjct: 158 EA---DASMYDAWVGTAPYDEGVTAGNWLAEQL---------DGAEAKILQIEGSVGASA 205 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A RT + + + + E L + + + M++++ + VV+ ND Sbjct: 206 AIGRTDGFAEVMAEH-SEWELLDSQSGDFTQDGGQAVMESFIKTYEG-QFNVVVCQNDNE 263 Query: 238 AMGAVEALKAHNKS-----SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 A GA++A+ A + + + DA + L G + V + QA+ + Sbjct: 264 AYGAMDAMDAAGITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNP-IQAETVKGVI 322 Query: 293 KNLADGKGAADGTNWKID 310 + + G+ T + Sbjct: 323 EQMEAGEDFEATTLITDE 340 >UniRef50_Q47NL4 Solute-binding protein n=26 Tax=Actinomycetales RepID=Q47NL4_THEFY Length = 372 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 135/329 (41%), Gaps = 37/329 (11%) Query: 18 GAAAHAADTRIGVTIY--------KYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQS 69 AA+ IG+ + K+D + E A+ P ++ ++ D S Sbjct: 34 AAASIDEGFTIGLLLPESKTARYEKFDRPYFE------EAVAELCPKCEVSYQNADQDVS 87 Query: 70 KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY 129 KQ Q + +L +G L ++ VD AAG+++++A+ Q VPV+ +++ Y Sbjct: 88 KQQAQAEAMLTEGASVLVLDAVDAKAAGSIVQQAKAQGVPVIAYDRLAEGGV------DY 141 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 189 YV D+K G +QG + + G+ Q +++ G P P+A + L Sbjct: 142 YVSFDNKTVGRVQGTALIEGMEKAGTA-----GEGQVIMINGSPTDPNAADFKAGAHEIL 196 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 + G + DT W +A+ +M+ ++ A+ I V + ND MA G + ALKA Sbjct: 197 D--GQVEIGAEYDTPDWSPDKAQQQMEQAITAVGADNISGVYSANDGMAAGIIAALKAAG 254 Query: 250 KSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG----AADG 304 + P+ G DA + + SG TV +A+ +A A G+ Sbjct: 255 VDEMPPITGQDAELAGIQRIISGDQYMTVYKAIRPEAEVAAAMAVAAATGEKYEGSQEHP 314 Query: 305 TNWKIDNKVVRVPYVG-----VDKDNLAE 328 D +P V V DN+ + Sbjct: 315 LTEVTDEAGNTIPAVLLEPIAVTADNIED 343 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 132/340 (38%), Gaps = 39/340 (11%) Query: 4 KVLTLSAVMASMLFGAAAHAAD-----------TRIGVTIYKYDDNFMSVVRKAIEQDAK 52 + L S + ++ FG A AD ++G + ++ + K+ + A Sbjct: 18 RPLAGSLLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAA 77 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 QL+M D+ + SKQ I ++A+ V L + V+ +A+ +PV+ Sbjct: 78 KC-GWQLVMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVIL 136 Query: 113 FNKEPSRKALDSY-DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 +++ + + D ++G+D + G D + K G+ + + L+G Sbjct: 137 VDRDVDQSVAKAGRDYITFIGSDFIDQGHRAADWLVKATG----------GKAKIIELEG 186 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G A R E+ K + + + + + M+ L + V Sbjct: 187 TTGASAANDRKKGF-DEIIAKNPGMTIIASQSGDFARDKGRQVMETLLQAH--PDVTAVY 243 Query: 232 ANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 A+ND MA+GA+ A+KA K I + +D + + +G L +V + Sbjct: 244 AHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGTKGGMDAIAAGELGASV-QSSPFFGPLA 302 Query: 289 FDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 D+A+ A G+ T K+ +K DK N+ + Sbjct: 303 CDVAQRYAKGEKIP--TWVKVSDKFY-------DKSNVQQ 333 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 126/330 (38%), Gaps = 28/330 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 MNKK L + L +A A + +++ KAI+ AK V++L Sbjct: 1 MNKKTLFA---GVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKEL-GVEVL 56 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D QI+ +A+ + + +DP A + KA+ +PV N + Sbjct: 57 SLSQNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDA 116 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A + G D G + + + K DG+ V++ G+ G+ Sbjct: 117 A--KPFVTSFTGPDVYSEGEMAAEALQKAL----------DGKGSIVIIAGQAGNGTTIG 164 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R +L G K E L A +D +A ++ +KI V AN+D MA G Sbjct: 165 RVDGFNAKLKALGSKIEVLDTVNADFDQQKALVASRDLITR-FGDKIAGVYANDDTMARG 223 Query: 241 AVEALKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 ++A K K++ P+ G++ +A +++G + T++ + ++ +G Sbjct: 224 FIDAWKEAKSGKATPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNG 283 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K + +P V K N+ + Sbjct: 284 KKIDAR---------LPIPLTVVTKANVEK 304 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 74/312 (23%), Positives = 126/312 (40%), Gaps = 32/312 (10%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ--NDQSKQNDQIDVLLA 80 AA T++G + + + + A ++ + +Q DQ Q + L++ Sbjct: 54 AAGTKVGGVSKTLTNEYWRSLGEGYANVATKL-GIEFVYQAAQSEGDQLGQLAIAENLIS 112 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +G AL + A +E A VPV+ N A + YVG K +G+ Sbjct: 113 QGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAAN------YVGNVQKGNGV 166 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + + N+ + +++G+PG A RT + + G K E + Sbjct: 167 NVANW----------FIANRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGG-KFEVVA 215 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVD 259 A W +A + L + ANND MA+G VEA+KA K+ + VFG D Sbjct: 216 SVPANWSREEAFNAASTILQQY--PDLIGFYANNDGMALGVVEAVKAAGKAEQVAVFGTD 273 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 + +A A V++G L GTV + + ++A L G+ +VV P Sbjct: 274 GISDAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLP---------RVVATPQA 324 Query: 320 GVDKDNLAEFSK 331 + KDN+ ++ Sbjct: 325 LITKDNVETYAT 336 >UniRef50_B1G9I5 Monosaccharide-transporting ATPase n=2 Tax=Burkholderia graminis C4D1M RepID=B1G9I5_9BURK Length = 358 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 69/313 (22%), Positives = 130/313 (41%), Gaps = 26/313 (8%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IG + +D R E+ A ++ ++ + D + Q+ Q+D +L++G+KAL Sbjct: 50 IGFSFPSFDAFRWPHDRHYFEKRADEL-GLRYIIQGANEDVATQDSQVDAMLSQGIKALV 108 Query: 88 INLVDPAAAGTVIEKAR-GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 I V+ A ++E+ + +P++ +N A+D Y+ G D+ G +Q Sbjct: 109 IIPVNVDAGKQIVERVKREAKIPIISYNYVIPSTAVD-----YWAGRDNYFVGELQARQA 163 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIKTEQLQLDT 203 + + +V++ G G A +T V+K D G Sbjct: 164 LQEAK-----------KGNWVIVSGPEGIDVARQKTEGALRVLKPHIDSGEIRIVSHQWH 212 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALP 262 W A +++ L+ N N I+ VI+N D MA+GA+ AL + + G D P Sbjct: 213 DAWSPEGALKQVEDALTSHN-NNIQAVISNEDGMALGALRALAEQKLAGKVWLCGEDCWP 271 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV---RVPYV 319 E + +G + + D + D A L G+ + + + + R+ + Sbjct: 272 EVAREIVAGRINMSAWTDLIQMGRVAADAAFALTHGQVPPGNDSITVSGRKIPGMRIGSL 331 Query: 320 GVDKDNLAEFSKK 332 GV++ L +F K+ Sbjct: 332 GVNRTTLPDFLKR 344 >UniRef50_C6J071 ABC-type ribose transport system n=7 Tax=Bacteria RepID=C6J071_9BACL Length = 429 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 67/312 (21%), Positives = 122/312 (39%), Gaps = 26/312 (8%) Query: 18 GAAAHAADTRI--GVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 AA D +I G+++ + R + ++ + + D + Q Q Sbjct: 105 SAAGGKDDGKIVIGMSMDTLKEERWQKDRDLFTAKVEELGG-EVKVLAANGDDATQLSQA 163 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + L+++GV L + + A ++EKA + + V+ +++ +D YY+ D+ Sbjct: 164 EQLISQGVDVLVVIAHNAEATAPIVEKAHKEGIKVIAYDRLIRNSDVD-----YYISFDN 218 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDK 192 G +Q + + + V + G +A V+K L +K Sbjct: 219 VRVGELQARAVIEAA-----------PKGNIVYIGGADTDNNAHMFKEGAMNVLKPLEEK 267 Query: 193 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-S 251 G + W +A M+ L+ N N I+ V+A ND A G ++AL A Sbjct: 268 GDIKIVYDQFSKDWKPEEALKNMENALTA-NNNDIQGVVAANDGTAGGVIQALNAQGMAG 326 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 IPV G DA A+ + G TV + A ++A A G+ + ++N Sbjct: 327 KIPVSGQDADLAAVQRIAEGTQLMTVYKPIKSIAITAAEMAVAAAKGEEVK--ADKTVNN 384 Query: 312 KVVRVPYVGVDK 323 + VP V +D Sbjct: 385 GKIDVPSVLLDP 396 >UniRef50_B0PGT6 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0PGT6_9FIRM Length = 375 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 66/320 (20%), Positives = 128/320 (40%), Gaps = 20/320 (6%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 AA A R+ D F + + +++ A+ +++L + D + +N ++ Sbjct: 53 GAASAEKKRVCFVARASADTFAAWMTNEMKKAAEQYDNIELTCVSGEGDDNTENGLLEDC 112 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + K + + + AA ++ +PV+ N + LD D + + Sbjct: 113 ITKQYDLVIVQSNNNAAQAPYVKNLVDAGIPVITTNPTTHQSDLDGSDDNSVLA----GT 168 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + D +A+ + V+L+G G+ AE R ++ Sbjct: 169 GTVDADPVAQAQVSAARAVSEVPQNANVVVLRGPSGNYHAEKRREAWDTYFFNERPDVTI 228 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALK-------AHNKS 251 L D A W++ +A M++W+ I+ +I+ ND MA GA+EA++ A + Sbjct: 229 LYEDYANWNSDEAMTLMESWVQA--GTHIDAIISMNDNMAAGAIEAIRGDSNYVNADGTT 286 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 + +GVD + L+K G L T L A++ AK D A + G+ N Sbjct: 287 NFLAYGVDGTAQGCLLIKEGLLTATALQSASDLAKKNMDYAAKVLSGEMQVTEVND---- 342 Query: 312 KVVRVPYVGVDKDNLAEFSK 331 V ++ +N+ E+ + Sbjct: 343 ---YVDAPEINAENVDEYIQ 359 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 70/339 (20%), Positives = 128/339 (37%), Gaps = 43/339 (12%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAA---------------------DTRIGVTIYKYDDNF 39 MN L A+ ++ + AA + +G + + Sbjct: 1 MNALALCRCAIALAIAWTLAACGGSSSGVGAVAPSSLDLKTKTYPELVVGFAQIGAESEW 60 Query: 40 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 + ++I+ A V+L ++D+Q Q Q I +A+GV + ++ V V Sbjct: 61 RTANTRSIQDTA-NQLGVELALSDAQQQQENQIKAIRSFIAQGVDVIGVSPVVETGWDEV 119 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 + + +P++ ++ + + + +G+D E G +A+ Sbjct: 120 FAEVKQAGIPLILLDRNAN---VPDDLYSVRIGSDFVEEGRRACGEMARLL--------- 167 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL 219 DGQ V+L+G G R T +E + + + A+ K++M A L Sbjct: 168 -DGQGAIVVLEGTQGSAPMIGRGTGF-QECLQSYPALHIIDSQSGDFIRARGKEEMAALL 225 Query: 220 SGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGT 276 N I+ V A ND MA+GA+EA++ + I + +DA+ A + G L T Sbjct: 226 QKH-GNSIDGVFAQNDDMALGAIEAIEEYGLRPGVDIKIVSIDAVRAAFEAMIDGKLNAT 284 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 + + F A NLA+G K D + R Sbjct: 285 IECNP-LLGPLFFATALNLANG--IPVEKWIKPDEGIYR 320 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 111/306 (36%), Gaps = 27/306 (8%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSK--QNDQIDVL 78 A +I + + + F + K + K + LL+ + + S Q I+ L Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKEL-GIDLLVKTAAQETSIEQQIQIIEDL 102 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY--YVGTDSK 136 + A+ I D V++ A+ + ++ + +A+ A ++ D++ Sbjct: 103 IRMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNE 162 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ++ IA+ Q +L+G ++ R + + Sbjct: 163 KAAYESAGFIAREIHK----------PAQAAILEGIRSADNSRQRRVGAERAFRE-NPLI 211 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + ++A W + +D S + I ++ ND MA+GA++ L+ + + V Sbjct: 212 RLVARESANWKIDEGRDVTRRLFS--DHPDITLLFCANDMMALGAIQFLQESGRYGVKVA 269 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 DAL EA + SG + TV A Q LA + +G+ + VV V Sbjct: 270 AYDALEEAKRAILSGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE---------VVLV 320 Query: 317 PYVGVD 322 V Sbjct: 321 ETSLVT 326 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 120/313 (38%), Gaps = 17/313 (5%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLM 61 K+ TL + +A + + V + + F +++ IE +AKA DV + Sbjct: 2 KRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIFA 61 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + S+ D Q + L+ K K +A + PA KA + + +V +++ K Sbjct: 62 SPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKN 121 Query: 122 LDSY--DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 L + ++ TD+ G I + G + +++G+ G+ E Sbjct: 122 LQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGG---------EVAIIEGKAGNASGE 172 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 AR +E+ K + + A WD +A D LS ++ ND MAM Sbjct: 173 ARRRGA-REVFVKSSSIKLVASQPADWDRIKALDVATNVLSR--NPNLKAFYVANDTMAM 229 Query: 240 GAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD- 297 G +A+ K I V G D +PEA +V L T+ D L + A Sbjct: 230 GVAQAVINAGKQGKILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARA 289 Query: 298 GKGAADGTNWKID 310 GK KI+ Sbjct: 290 GKQIPVDVEPKIE 302 >UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZZ2_ACICJ Length = 369 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 127/318 (39%), Gaps = 28/318 (8%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRK--AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 + T I + + V + I+ A P+ +L+++++ + Q +Q + + Sbjct: 38 SSKKTTIAFLLPENSSPRYEQVDRPWFIKMAHAADPNAKLIVSNANSSPDTQLNQAESAI 97 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 + G L ++ VD A ++ A +V V+ +++ D YYV D+ + G Sbjct: 98 SNGADVLVVDPVDGKAGAAIVNYAARNHVKVISYDRLIQDSKPD-----YYVSFDNTKVG 152 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIKT 196 +QG+ IAKH +++ G P P+A V+ L G Sbjct: 153 ELQGEYIAKH----------TKPGGSVMMINGAPTDPNAFDFRKGAMNVLGPLFKSGKLH 202 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPV 255 + T W A ++ L+ + NK+ V+A ND A G + AL+A +PV Sbjct: 203 LAYSVMTPDWSPQNAFEESQQALTRLH-NKVNAVLAANDGTASGVIRALQAVGLAGKVPV 261 Query: 256 FGVDALPEALALVKSGALAGTVLN-DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 G DA L + G + TV A A D K A N K +NK++ Sbjct: 262 TGQDATNGGLTFILEGLQSMTVFKYVPEEAAAAAELAVAVATDTKPPAGLLNGKTNNKMI 321 Query: 315 RVPYVG-----VDKDNLA 327 VP V V K N+A Sbjct: 322 DVPSVLLKPLVVTKANIA 339 >UniRef50_D2B5R3 Putative sugar ABC transporter, substrate-binding protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B5R3_STRRD Length = 378 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 82/335 (24%), Positives = 133/335 (39%), Gaps = 43/335 (12%) Query: 18 GAAAHAADT-------RIGVTIY--------KYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 A+A A DT +IG+ + K+D +++ E A+ P Q++ Sbjct: 35 AASASAGDTGAVDRGFKIGLLLPESRTARYEKFDRPYIT------EHLAELCPKCQVVYG 88 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 ++ +D +Q Q D +L + VK + ++ VD A + AR Q V VV +++ L Sbjct: 89 NAGDDPDRQRQQFDAMLNENVKVIILDPVDARAIAQSVSNARSQGVKVVAYDR------L 142 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 Y D+ + G +QG + A G+ V++ G P P+A+ Sbjct: 143 AHGPIDAYTSFDNIQVGRMQGQALLDALKAG-----GDPGRGPIVMINGSPSDPNADDFK 197 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 V LN G + DT W +A + A + A +I V A ND MA G Sbjct: 198 KGVHSILN--GQVIVGREYDTPGWSPERAGTEAAAAFAELGAERIIGVYAANDGMAGGVA 255 Query: 243 EALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 A++ + P+ G DA A+ + G TV +A LA +LA GK Sbjct: 256 LAMRNAGVRKGTPLTGQDAELAAIQRILLGTQTMTVYKPIRPEAVNAAQLAVDLASGKPV 315 Query: 302 A--DGTNWKIDNKV-VRVPY-----VGVDKDNLAE 328 + +DN +P V DN+ + Sbjct: 316 TGSGSGSGTVDNGTSSSIPAQIIQPTVVTWDNIKD 350 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%) Query: 28 IGVTIY-KYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +G + + F S +I AK+ V+L+ ++ D + QN QI+ ++A+G K L Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSL-GVKLIQRNANADVNAQNSQIEDMIAQGAKVL 142 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + + G + +A+ + +PV+ ++ + A D ++G++ I D + Sbjct: 143 IVAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTAC--SDFIAFIGSNFYGQAQIAADDL 200 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 A + Q + +L G PG+ RT ++ K + T + Sbjct: 201 ATATGS----------QAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKF 250 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPE 263 D + M L I V A ND MA+GA++A+ A K I + +D + Sbjct: 251 DQTDGQSVMAQMLQANPG--ITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQ 308 Query: 264 ALALVKSGALAGTVLNDAN 282 A+ V +G + V + Sbjct: 309 AVQDVAAGTIYADVETNPR 327 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 144/346 (41%), Gaps = 28/346 (8%) Query: 1 MNKKV---LTLSAVM-----ASMLFGAAAHAADTRIGVTIYKYDD--NFMSVVRKAIEQD 50 M K++ L+++ VM ++ AA+ D + +T+ +++ + E+ Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEK- 59 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A+ ++++ + D D ++Q + I ++ G + I+ VDP+A T +++A + V Sbjct: 60 AEKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEV 119 Query: 111 VFFNKEPSRKALDS---YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 + + + VG E G D+ A+ D + Sbjct: 120 CALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEAL----------DRSGKIA 169 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +++G PG D E R + +E N + E + W +A M + ++ Sbjct: 170 IIEGTPGMSDTEGRKKGIDEE-NKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQS--NPEV 226 Query: 228 EVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 E+VI ++D MA+GA +AL+ + + + G+ +AL L+K G + GT++ +A Sbjct: 227 ELVICHSDNMAVGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAY 286 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + G+ + D + ++N+ +F+ + Sbjct: 287 TALEATAKVVRGEAEKETFYNVQDLPLFAETGDVCTQENVDKFTAE 332 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 70/307 (22%), Positives = 121/307 (39%), Gaps = 30/307 (9%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 T+IG + + + + + A + S+ DQ Q + ++ +G + Sbjct: 56 TQIGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQ 115 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 L ++ +E A + + VV N A YVG +++G+ Sbjct: 116 GLLVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPSATQ------YVGNVQRDNGVRVAQ 169 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 N+ G + ++G+PG A RT + + G + + A Sbjct: 170 WFID----------NRPGGGKVAAIEGQPGVFAAGQRTDGFTTTITEAG-NFQVVASVPA 218 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPE 263 W QA D L + ANND MA+G VEA+KA N + + VFG D +P+ Sbjct: 219 NWSREQAYDAASTILQQH--PDLIGFYANNDGMALGVVEAVKAANLQEQVSVFGTDGIPD 276 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 A A +++G L GTV + + ++ L G+G +VV P + Sbjct: 277 AYASIRAGDLTGTVDSFPVLTGEVAMEVVLRLLAGQGIP---------RVVATPQALITA 327 Query: 324 DNLAEFS 330 DN+A++S Sbjct: 328 DNVADYS 334 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 67/309 (21%), Positives = 123/309 (39%), Gaps = 26/309 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 A +AD I + +D+ F E AK + L+ +D +KQ++ ID Sbjct: 20 TALPAFSADL-IAIITPAHDNPFFKAEAVGAEAKAKEL-GYETLLMTHDDDANKQSEMID 77 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 + +G KA+ ++ A+ ++KA+ +P ++E + + + +++ Sbjct: 78 TAIGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINATGV----AVAQIVSNNY 133 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 + + K + +V L G+ +A R+ ++D Sbjct: 134 QGAQLGAQEFVKLMGE----------KGNYVELVGKESDTNAGIRSQGYHDVIDD-YPDL 182 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + + +A W +A KM+ L I+ VI+ ND MAMGA+ AL+A + + V Sbjct: 183 KSVAKQSANWSQTEAYSKMETILQA--NPDIKGVISGNDTMAMGAIAALQAAGRKDVIVV 240 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G D + +KSG + TVL A QA+ + A K +D Sbjct: 241 GFDGSNDVRDSIKSGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDC----- 295 Query: 317 PYVGVDKDN 325 V ++ DN Sbjct: 296 --VLINADN 302 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 124/317 (39%), Gaps = 31/317 (9%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 D +G+ + + + + V+++ D+ D +K + Sbjct: 137 AASGGKGDGDYTVGMANFTLSGPYFVGM-DKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + LL+K V A+ I+ +A V+ + P + +++ S A ++G D+ Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRK-----FRSGTYASWIGPDN 250 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD-AEARTTYVIKELNDKGI 194 + G G+ +A + L+KG P ARTT V K L+ GI Sbjct: 251 EAIGRQDGEFLAAKLGKD----------ATVALIKGGPADNSIGLARTTGVKKALDAAGI 300 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSI 253 + + D W + M++ L+ ++ V NDAM +GA A+K + I Sbjct: 301 RMVEG-PDYGNWASDGGLTVMESLLASH--KDLDAVFCENDAMCLGAQRAVKDAGREKEI 357 Query: 254 PVFGVDALPEALALVKS-GALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 + GVD EAL + + G T LNDA+ D A ++ DGK T Sbjct: 358 VLAGVDGQAEALQAIAAGGNYLVTGLNDADQIGSLGLDRAVDILDGKKPEKDT------- 410 Query: 313 VVRVPYVGVDKDNLAEF 329 V V K+N A++ Sbjct: 411 --VVDSPQVTKENAAKY 425 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 131/333 (39%), Gaps = 38/333 (11%) Query: 5 VLTLSAVMASMLFGAAA------HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 ++ + V + LF A + G T ++ + + + IE+ +A D+ Sbjct: 1 MIAATIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDI- 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D DQ KQN+QI ++ +G+ L + VD +E + +++PV + E S Sbjct: 60 LITRDPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVS 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 D+ + +D+ ++G+ D+ K +++ + Sbjct: 120 ----DTEAVVSTIVSDNYDAGVQCAK------------DMMKKKTSANIIIVNQKALNSI 163 Query: 179 EARTTYVIKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R + K + + A ++ A M+ + +VV+ ND + Sbjct: 164 NERVKGFRDTIKGHPQYKIVEEKESAAEFEI--AMKVMEKII--YEKKNYDVVMGGNDPI 219 Query: 238 AMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+G + A++ +K+ + V+GVD P+ A++K+G L GT + A + Sbjct: 220 ALGCIAAMQMTDKTDQVMVYGVDGSPDGKAMIKAGFLEGTAAQSPIKIGEKAVQTAYSYL 279 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 G+ K V +P + DNL + Sbjct: 280 AGETV---------KKHVTIPVELITADNLKFY 303 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 124/309 (40%), Gaps = 25/309 (8%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKG 82 RIGV + + + +++ + AK V+++ ++ D Q + ++ ++AK Sbjct: 48 GQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEKDLKSQLNTLEAMVAKK 107 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY--YVGTDSKESGI 140 + + +DP I KA + +PVV E SR L ++ K+ G Sbjct: 108 YDGIIVTPMDPFNLIPGIVKADEKGIPVVCSGPEVSRDGLKQAGAVMDGWITATFKDQGR 167 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + + +A+ + + +++G PG ++AR + G+K Sbjct: 168 LCAEDMAEKLPSGS----------EVAIIEGIPGAGQSKARREGASEGFEKAGLKLV--A 215 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 260 ++ WD +A D + +++ + ND MA+ AV+AL+ + V+G D Sbjct: 216 VEAGNWDRNRAYDITTNLVKAH--PQLKGIYCANDVMALAAVDALEVAGIEGVTVYGTDF 273 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 +PEA +KSG LAG+ + T L + VP Sbjct: 274 IPEAAEAIKSGRLAGSTTFSQAAWTRGTLVYTLKLIKKDEDLPEK--------LSVPITL 325 Query: 321 VDKDNLAEF 329 V+ +N+ +F Sbjct: 326 VNGENIGQF 334 >UniRef50_A6X2R7 Periplasmic binding protein/LacI transcriptional regulator n=53 Tax=Bacteria RepID=A6X2R7_OCHA4 Length = 351 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 77/327 (23%), Positives = 134/327 (40%), Gaps = 15/327 (4%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSV--VRKAIEQDAKAAPDVQLLM 61 K + V++S A A D +G + + K ++L Sbjct: 7 KAAFAAVVLSSFAGNAQAEVKDAVVGFLMPDQASTRYEERDYPGFAAEMKKICESCKVLY 66 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 ++ D SKQ Q + ++++G K + ++ VD AAA ++++ A+ Q++ V+ +++ Sbjct: 67 LNADGDASKQQQQFNSVISQGAKVIVLDAVDTAAAASLVKLAQSQDIKVIAYDRPIPDAT 126 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 D +YV D++ G + + KH + + + G P A Sbjct: 127 SD-----FYVSFDNEAIGKSIAESLVKHLKDKGVA----GDKGGVLQINGSPTDAAAGLI 177 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + L D G KT + DT W ++A+ ++ N ++I V+A ND A GA Sbjct: 178 KNGIHAGLKDSGYKT-LAEYDTPEWAPSKAQQWASGQITRFN-DQIVGVVAANDGTAGGA 235 Query: 242 VEALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 + A+KA + PV G DA AL L+ SG T+ + A +A L +G+ Sbjct: 236 IAAMKAAGIDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVAAEAARVAGQLLNGET 295 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLA 327 + VP V V DNL Sbjct: 296 PKAEATLYNTPSKLFVPVV-VTADNLK 321 >UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0QT42_MYCS2 Length = 365 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 70/325 (21%), Positives = 119/325 (36%), Gaps = 30/325 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 A +G+ + + + KA + + Q QI+ ++ KGV Sbjct: 37 AKGTVGIAMPTKSSERWVADGQNMVDQFKAL-GYDTDLQYGDDVVQNQVSQIENMITKGV 95 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 K L I +D ++ ++ A +PV+ +++ + YY D+ + G++Q Sbjct: 96 KLLVIAPIDGSSLTNTLQHAADLKIPVISYDRLIKGTP----NVDYYATFDNTKVGVLQA 151 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIKTEQL- 199 + I G G L G P +A V++ D G + Sbjct: 152 NYIVDTLGVADG-----KGPFNLELFAGSPDDNNATYFFQGAMSVLQPYIDSGKLVVKSG 206 Query: 200 -----QLDTAMWDTAQAKDKMDAWLSGPNA-NKIEVVIANNDAMAMGAVEALKAHNKSS- 252 Q+ T WD A+ +MD LS +++ V++ D ++ G + ALK+ + Sbjct: 207 QTTFDQIATLRWDGGLAQSRMDNLLSQAYTSGRVDAVLSPYDGISRGVISALKSAGYGNA 266 Query: 253 ----IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 V G DA ++ + +G TV D AKA A + G Sbjct: 267 AKPLPIVTGQDAELASVKSIVAGEQTQTVFKDTRELAKAAVQEADAVLTGGTPQVNDTET 326 Query: 309 IDNKVVRVPY-----VGVDKDNLAE 328 DN V VP V VDK N + Sbjct: 327 YDNGVKVVPSYLLDPVSVDKSNYKK 351 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 18/302 (5%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 K + + + S L A A +I + + + + +R+ E+ AK ++ L++ Sbjct: 7 KNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEK-NIDLIVQV 65 Query: 64 SQNDQSKQ--NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 ++ + S + ++ ++AK V A+ + D A +KA +P++ + KA Sbjct: 66 AEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKA 125 Query: 122 LDSYDKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++ + YVG D+ G ++ +A+ + +L+G PG + E Sbjct: 126 AEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGK----------KGNVAILEGIPGVDNGEQ 175 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R +K + + + +A W+T QA L+ I + A ND MA+G Sbjct: 176 RKGGALKAFAE-YPDIKIVASQSANWETEQALTVTTNILTA--NPNINGIFAANDNMAIG 232 Query: 241 AVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 AV A++ + V G D +P A+ VK G + T+ Q + A + + Sbjct: 233 AVTAVENAGLAGKVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQ 292 Query: 300 GA 301 Sbjct: 293 EI 294 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 62/312 (19%), Positives = 122/312 (39%), Gaps = 34/312 (10%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD------VQLLMNDSQNDQSKQNDQID 76 ++G + + F + EQ K D +++ ++D+ Q D Sbjct: 70 KGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTD 129 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+ +G AL ++ + + ++ A+G+ +P + N A Y+VG D+ Sbjct: 130 NLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTINVNDGLIASA------DYFVGPDAY 183 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ++G + + ++K + ++ G A RT + D Sbjct: 184 QNGELAAEWVSKQLGD----------KGDVAIVIGMAKAFAARERTAGFKGWIKDNNSGL 233 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + A WD +AK+ W+ ++ + NND MA+G VEA++ K I V Sbjct: 234 NVVAEQNADWDRQKAKELASTWIQ--QNPDLKAIFCNNDDMALGVVEAVEEA-KKDILVV 290 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVD + EA +++G L TV + ++ ++ + G+ +V Sbjct: 291 GVDGIGEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIP---------RVTHT 341 Query: 317 PYVGVDKDNLAE 328 P +DK N+ + Sbjct: 342 PQALIDKTNVDK 353 >UniRef50_B9MLQ1 Monosaccharide-transporting ATPase n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MLQ1_ANATD Length = 362 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 122/316 (38%), Gaps = 30/316 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 + RIG + + R + A ++ ++ + +Q +Q+ LL+K Sbjct: 51 KPSKVRIGFAMGTLKEERWFKDRDILIAKAHEK-GYEVEWVNANENDVEQINQVKYLLSK 109 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 + L I + + + A+ + + V+ +++ +D YV ++ + G + Sbjct: 110 NINILIIVPNNYEKCSSAVNLAKKKGIKVISYDRLVKNSDID-----VYVSFNNYKVGEL 164 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIKTEQ 198 + L K +V L G+PG + + V+ L K Sbjct: 165 MAKWL-----------LKKVPYGNYVFLLGDPGDYNVQMIKEGYHKVLDSLIQKKQINSL 213 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFG 257 L+ W A + ++ L +I+ V+A+ND++A GA+ AL + +PV G Sbjct: 214 LEKYCYNWRKEYAYNYVNNLLE--EGKRIDAVLASNDSLAEGAIMALSEKRLAGSVPVTG 271 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 DA A + G TV + T D+ L GK N+ I+N VP Sbjct: 272 QDADISACQRIVKGTQLMTVYKPIDKLVDLTLDIVDRLIKGK--LLKPNYTINNGYKNVP 329 Query: 318 Y-----VGVDKDNLAE 328 +GVDK N+ + Sbjct: 330 TFFIDPIGVDKTNIND 345 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 16/302 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 +L +A+ + + A +G + + + + +++ AK A + L +D+ Sbjct: 11 LLVGAALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDA-GINLKFSDA 69 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 Q Q Q I +A+ V +A + V + V+ +A+ +PV+ ++ K Sbjct: 70 QQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKDTSL 129 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y +G+D E G G + + + N+ G I L+G G A R Sbjct: 130 YVTM--IGSDFLEEGRRAGRWLEERYK-------NEAGPINIAELQGTVGSAPANDRHAG 180 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 +++ + + K + + + + A K M+A+ + +I VV A+ND MA+GA++A Sbjct: 181 LMEVIKN-DPKFKIIASQSGDFTLAGGKQVMEAF-AKTYGKQINVVYAHNDDMALGAIQA 238 Query: 245 LKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 ++ + V DA + +G + V K++ GK Sbjct: 239 MEEAGIKPGKDVSVVSFDATKGGFEAMIAGKINVDVECSP-LLGPQLMTAVKDVVAGKQL 297 Query: 302 AD 303 Sbjct: 298 PK 299 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 64/328 (19%), Positives = 113/328 (34%), Gaps = 38/328 (11%) Query: 9 SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQ 68 + S A +I V +Y FM + + ++ AK V++ + D++ D Sbjct: 21 TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKEL-GVEVTVLDAKGDS 79 Query: 69 SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKA 128 S Q QI LA+GV + ++ + A ++ V + D+ Sbjct: 80 STQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAA--- 136 Query: 129 YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE 188 V D++++G + + +AK + + +G G A R Sbjct: 137 --VAFDNEKAGKLGAEALAKLMGE----------KGTVLEYQGAKGAYHAILRGKGFNDG 184 Query: 189 LND-KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKA 247 + GIK A W A + + I + ++ND M G V L Sbjct: 185 IKQFPGIKVIGRD---AQWTADNALSLTVDNFTA--DSSINGLFSHNDEMVRGIVSGLSQ 239 Query: 248 HNKS-------SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 NK IP+ GVD P AL +++G T+ + +L DGK Sbjct: 240 INKDAPVGAANHIPLVGVDGTPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQ 299 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K+ + K+N+ + Sbjct: 300 VP---------KMQLTDTKLITKENVDD 318 >UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG1_9FIRM Length = 398 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 144/376 (38%), Gaps = 57/376 (15%) Query: 1 MNKKVLT--LSAVMASMLFGAAAHAADT---------------------------RIGVT 31 M K++L LSA M L G ++ + ++G++ Sbjct: 1 MKKRILAAALSATMIVSLAGCSSGGTSSTAESSSEAATTESTAETGSEGGSTGGQKVGLS 60 Query: 32 IYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 91 + + ++Q K A + ++ S ND ++Q I ++A GV L + + Sbjct: 61 MPTQSLERWNRDGSYLDQQFKDA-GYETVITYSDNDTNRQVSDIQNMIADGVDLLVVAAI 119 Query: 92 DPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWA 151 D A TV+ +A +PV+ +++ + +YYV D+ G +QG I Sbjct: 120 DGEALNTVMNEAGEAGIPVIAYDRLIMND-----NASYYVSFDNYTVGTLQGQYIVDTLD 174 Query: 152 ANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL----NDKGIKTEQLQLD----- 202 + N G + G+P +A + L + + Q D Sbjct: 175 LD-----NAAGPFNMEITAGDPADNNATYFYQGAMDVLQPYIDSGKLVVVSGQTDFDTVA 229 Query: 203 TAMWDTAQAKDKMDAWLSGPNAN--KIEVVIANNDAMAMGAVEALKA--HNKSSIPVFGV 258 TA WD+ A ++ L+ A+ +++V + +ND+ A+G +A+++ + + G Sbjct: 230 TAQWDSQTAMERAQNVLASYYADGTQVDVWLCSNDSTALGVSQAIQSDYAGSNQPIITGQ 289 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG----KGAADGTNWKIDNKVV 314 D L + G + TV +N+A T DL K + +G + + W D Sbjct: 290 DGDEANLKNIVDGLQSMTVYKAVSNEAVVTLDLGKAILNGDTIDESLITNSGWDFDCSYD 349 Query: 315 RVPYVGVDKDNLAEFS 330 Y D +N F Sbjct: 350 TESYFTSDGNNCPSFL 365 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 30/309 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +IG + Y + + + + A+ +L+M ++ ++ KQ ++ L+A+ Sbjct: 66 KKLKIGFSESTYSGAWRVAEVEDVTKYAEMN-GYELIMTNADSNIEKQIGDVEDLIAQKC 124 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 + I VD A E + +PV+ + + D + +D + G Sbjct: 125 DLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKE-DFITTIRSDQYQQGQGCA 183 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND-KGIKTEQLQLD 202 + H + + G PG DA+ R+ + + D IK Q Sbjct: 184 EWTVGHVGDKDTT---------VLEITGNPGQSDAQNRSRGFNEYVADHSNIKVIQ---Q 231 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVD 259 W A A++ + + K +V+ ++D MA+GA+ LK + + VD Sbjct: 232 NGEWSRATAQEVVQNV--AQSGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVAVD 289 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 EAL +K+ + + FD G + V Sbjct: 290 GQKEALDAIKADEIGAIITCTPKG-GDVLFDCINKYFAGDELEEE---------YFVHQS 339 Query: 320 GVDKDNLAE 328 + +N+ E Sbjct: 340 TITTENVDE 348 >UniRef50_Q8GBR5 Putative mglB homolog n=1 Tax=Treponema maltophilum RepID=Q8GBR5_TREMA Length = 405 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 27/320 (8%) Query: 1 MNKKVLTLSA---VMASMLFGA---AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M K L L+ + ++L G +A +G I ++ F+ +++ A Sbjct: 1 MKKIALVLALSVLMAGTVLTGCAKKSAAGGKVVMGALIRNLNETFLRDYADNLKKLANEN 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 +V+L + D +D + Q DQ++ LL +GVK I D AA + + + FF Sbjct: 61 -NVELKLLDGNSDVATQLDQLNTLLTQGVKYFVIVPQDTAATEQMAKAIGAKGGAAAFFK 119 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 S AL + + + +G IQ +I ++ D I +L+ G+ G Sbjct: 120 HSASVAALKTGKTFFLASSPESVAGDIQAQIIDDYFKTYP--DKAPGKTINMLLINGQLG 177 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 HP R V++ L +G + DTA W +A+ KMDAWL+ N K VV+A N Sbjct: 178 HPAQVNRRKGVLEGLASRGYTVNMVAEDTANWGAGEAQQKMDAWLAAHNG-KFNVVVAQN 236 Query: 235 DAMAMGAVEALKAHNKSS-----------------IPVFGVDALPEALALVKSGALAGTV 277 D MA+GA+E++ + + +PV GVD + + + TV Sbjct: 237 DDMALGAIESMLTNKYTDDPSDVTKDTNGDGTVLKVPVLGVDGTETGVRSMNENKMYATV 296 Query: 278 LNDANNQAKATFDLAKNLAD 297 L D+ Q+ F+L +A Sbjct: 297 LQDSIGQSSTAFELVYQVAT 316 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 137/344 (39%), Gaps = 45/344 (13%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT----------RIGVTIYKYDDNFMSVVRKAIEQD 50 + K + +AV + L AA + DT +IG+ + + F S + K ++ Sbjct: 5 VKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGA-KE 63 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A A+ D+Q D + QN QID + +GV + I+ VD IE+A+ + V Sbjct: 64 AAASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIV 123 Query: 111 VFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLK 170 + + V TD+ ++G + + G+ +L+ Sbjct: 124 IAVDTPAKSAD-------AVVMTDAVQAGEKSCQYLFEQMG----------GKGNVLLVD 166 Query: 171 GEPGHPDAEARTTYVIKELND-KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 G P R T + GIK Q + D A L+ ++ Sbjct: 167 GTPLQT-IRDRITGCNNVVKKFPGIKVVGQQA--SKNDRASGLAVTTDMLTAT--PDVQG 221 Query: 230 VIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGA--LAGTVLNDANNQAK 286 + ND A+GAV A++ +K+ + V GVD PEA+A +K GT + + Sbjct: 222 IFGMNDPSALGAVLAVQQAHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVR 281 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++A+N+ D K A+ T + +P V +D ++++ Sbjct: 282 KAVEVAQNIIDNKPPAETT--------ILIPSELVTRDTVSQYK 317 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 177 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 118/308 (38%), Gaps = 30/308 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 + G T ++ F +V I + D Q++ D DQ KQN+QI L+ + Sbjct: 41 NTRKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGD-QMITLDPALDQKKQNEQIKQLVKR 99 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 V A+ +N VD A + A+ +PV+ + + R L A + +D+ ++G++ Sbjct: 100 KVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDL----VAMTIVSDNYKAGVL 155 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + K Q VLL A R + + + + L Sbjct: 156 CAKEMMKQ-----------KDQANIVLLTHNAARS-AVDRINGFLDTIKNNK-NYKILAS 202 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 260 +A K+D + I+VV+ ND AMGA+ AL + + + V+G+D Sbjct: 203 ADTQGQIERALPKVDKIIEEYQ--NIDVVMGLNDPAAMGALAALDSKGAREGVLVYGIDG 260 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 PE L+K G + GT A + A + G+ K + Sbjct: 261 SPEGKKLIKEGMMTGTAAQSPKQMADTAVNAAYQILQGEKV---------EKKKVISVQM 311 Query: 321 VDKDNLAE 328 + K N+ + Sbjct: 312 ITKKNVEQ 319 >UniRef50_Q0RYT8 ABC sugar transporter, periplasmic substrate binding protein n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0RYT8_RHOSR Length = 340 Score = 177 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 128/297 (43%), Gaps = 28/297 (9%) Query: 35 YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA 94 Y N++S +RKA E+ V + +S D S Q Q+ + +AK V + I Sbjct: 56 YGRNYVSSLRKAAEEH-----HVNAFVMNSNYDASVQASQMKIAIAKKVDGIVIWPALYG 110 Query: 95 AAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ 154 A ++ +A+ +PV N +P LD+ + G + + G +QG +AK + Sbjct: 111 AEQPMLIQAQRAGIPVDISNSQPPED-LDTSLYHAFTGPNDQRIGELQGKELAKLLGS-- 167 Query: 155 GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDK 214 + +V + G PG+ A R + +E+ + + L +D QA+ Sbjct: 168 --------KGTYVYIGGTPGNAAAINRQIGLEREMANH-PDVKLLGSQPGNFDKNQAQTA 218 Query: 215 MDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGAL 273 A +S N+I+ ++ +D +A GA +AL A + + G + P A +L+++G++ Sbjct: 219 ASALISR-FGNQIDALVTPDDIIASGAAQALDAAGMAGQVKLLGHNYAPVARSLLENGSM 277 Query: 274 AGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + T+ + ++ GK V +P V KDNL EF+ Sbjct: 278 STTLFQSPCWDSTHALTTMMDVLAGKDVP---------PVSYMPLPVVTKDNLDEFT 325 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 64/309 (20%), Positives = 127/309 (41%), Gaps = 27/309 (8%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 A IGV++ ++ F +++ A +L++ ++ + S+Q +Q+ L+ Sbjct: 22 AGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAAD-EGYELVVLNANGNSSQQVNQVQNLV 80 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 + V A+ + D A + +A+G N+PV+ ++ P D ++G+DS ++ Sbjct: 81 TQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQG------DVTTFIGSDSVKAS 134 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 D +AK G+ ++KG G R+ L +K + + Sbjct: 135 TELCDYLAKQMG----------GKGNLAIIKGVLGSSTEIERSKGCGSIL-EKNPDIKVV 183 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVD 259 A WD +A + L+ +++ + A ND MA+GA +A +S++ + VD Sbjct: 184 STTNADWDENKAYNVAQDVLTA--NPELQAIFAQNDGMALGAAKAAAQAGRSNLKIVSVD 241 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 P+ ++SG + T+ + + A G+ + P V Sbjct: 242 GFPQVYDAIESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQ-------PTV 294 Query: 320 GVDKDNLAE 328 V K+NL E Sbjct: 295 LVTKENLEE 303 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 59/302 (19%), Positives = 112/302 (37%), Gaps = 26/302 (8%) Query: 1 MNKKV-LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M +K+ L + + +L G A IGV+ +D + + ++ + + Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCS-EDIWRDKLNDELKMGEYLNDSLIV 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + S +D QN Q++ + +GV L ++ +A +E+A + +PV+ ++++ Sbjct: 60 KLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKT-- 117 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 +S ++G D+ G G IA+ G+ + V + G G A Sbjct: 118 ---NSDKYTAFIGCDNYTIGKSMGTFIAQQLQ----------GKGRIVEISGLEGSSPAL 164 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R + + + + + W M L + V A+ND +A Sbjct: 165 ERHRGFMDAIK-PYPGLQVVASEEGNWKEEGGIQAMKRILKQTQ--DFDYVFAHNDCLAW 221 Query: 240 GA-VEALKAHNKSSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 GA V A + K + GVD + L LV+ G + L LA + Sbjct: 222 GAYVAARQMRVKRNYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKI 279 Query: 296 AD 297 Sbjct: 280 LK 281 >UniRef50_A9B1C5 Solute-binding protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1C5_HERA2 Length = 358 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 70/285 (24%), Positives = 125/285 (43%), Gaps = 23/285 (8%) Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 D Q+L ++QN+ S Q Q + + G + L ++ VD A T+ + A Q++PVV ++ Sbjct: 57 NDCQVLYYNAQNNPSLQQQQAEEAIKAGARVLVLDPVDSVDARTIADHAAEQSIPVVAYD 116 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 + L+S Y+ D+++ G +Q + + AA + + +LL G Sbjct: 117 RLI----LNSPGVTAYISFDNQKIGELQAESLIAGLAARGLSNP------KILLLHGSLS 166 Query: 175 HPDAEARTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 +A V L G T + DT W A+A+ ++ L+ ++I+ + Sbjct: 167 DNNASEYKRGAKKVFDPLVAAGKLTIIGEFDTPDWKPAEAQQYVERMLAA--GDQIDGIY 224 Query: 232 ANNDAMAMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 A ND A GA+ A++A +P + G DA A+ + +G TV QA+A Sbjct: 225 AANDGTAGGALVAVQAAKLEPLPLITGQDAELTAVQRIITGEQHMTVYKAIRPQAEAAAK 284 Query: 291 LAKNLADGKGAADG--TNWKIDNKVVRVPYVG-----VDKDNLAE 328 +A L G+ N + N ++ VP + V K + + Sbjct: 285 IAHALMVGQPIPTNLVNNRTVANGIMNVPAILLNPVVVTKATVKD 329 >UniRef50_Q2CJV7 Putative rhizopine uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CJV7_9RHOB Length = 300 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 148/321 (46%), Gaps = 25/321 (7%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 + G AA A IG ++ ++D +++R+++ A V L++ ++ ND + Q DQ+ Sbjct: 1 MTGGAACAE--TIGASMAQFDGTIPTMLRESMVAQAGQLMSVDLVVENAANDSATQLDQV 58 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + LA GV A+ + +V+PAAA + E A+ VP+VF N+EP D YVG+D Sbjct: 59 NGFLAAGVDAVIVQIVEPAAAAAMTEVAQAAGVPLVFVNREPGNVG-QLPDSQSYVGSDP 117 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 +G+++ + + A ++ G P A RT + L + Sbjct: 118 GGAGLLEIAEVCRLLGAQ------GTDPAPIYVMTGAPSGEAAV-RTQDIHDVLGNGACD 170 Query: 196 TE--QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-- 251 + +A W A+A M AWLS + V+AN+D MA+GA++A+KA S Sbjct: 171 VMLGIVAEQSAGWSRAEADGLMTAWLST--GEPFDAVVANDDEMALGAIDAMKAAEWSMQ 228 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 I V G+D P AL V G L TV+ DA Q A A + + Sbjct: 229 DIIVGGIDGTPAALEAVAKGDLDVTVIEDAAGQGAAALA---------AALNLSAGDPVE 279 Query: 312 KVVRVPYVGVDKDNLAEFSKK 332 +V+ +P V D +A + + Sbjct: 280 RVILIPPQLVTPDTVAAYQTQ 300 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 56/288 (19%), Positives = 112/288 (38%), Gaps = 19/288 (6%) Query: 24 ADTRIGVTIY-KYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 A +G + K + F +++ +A+ V+LL ++Q+ SKQ + L+AKG Sbjct: 79 ASATVGFSQSEKEANPFRIAETASLKDEARKR-GVKLLAVNAQSQFSKQISDVQDLIAKG 137 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 L I ++ V+ A + +P+V +++ + Y ++G+D E G Sbjct: 138 ADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCKDY--VSFIGSDFVEQGRRA 195 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 D + + G+ + +L G G+ RT + +K + + Sbjct: 196 ADKMIEATG----------GKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQ 245 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS--IPVFGVDA 260 T + + + + + I+ + A ND M +GAV ALK+ K + + VD Sbjct: 246 TGDFAREKGQSVTEQLIQSKPG--IKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDG 303 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 A+ + G ++G + ++ F G+ K Sbjct: 304 TRNAVKQIVDGWISGVIESNPRF-GPLAFQTLDTFTKGEEVQQDIVIK 350 >UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6L8_RHIL3 Length = 340 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 120/325 (36%), Gaps = 23/325 (7%) Query: 9 SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQ 68 + + ++LF +A A D G + + + K E+ AK V+ ++ D + Sbjct: 29 ALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEK-GVKTVVIDPRGSV 87 Query: 69 SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA----LDS 124 KQ + +D LL++ V A+ +D A ++K VP+V + A D Sbjct: 88 EKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQLKDP 147 Query: 125 YDK-AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 Y + V TD+ +SG++ G++ A L KD + ++ G+P + + T Sbjct: 148 YPGLSALVATDNYQSGVVAGEMAA--------GVLPKDKTAKIGIVMGDPAYTIVKLDTD 199 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 L+ G K + W + + +L+ I+++ ++ D MA+G Sbjct: 200 GFKAALDKAGAKYTIVAEQPTNWTPDEGEAVCQNFLTAH--PDIDLIYSHADDMAIGCAR 257 Query: 244 ALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 A+ A + + +G + G+V K FD A Sbjct: 258 AIDASASKPKLIATGGGSKLGHDAILAGEMYGSVCTRPQLLGKLMFDALYEAATKPETPK 317 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAE 328 G D + K+ + Sbjct: 318 GRFVTYDMP-------PITKETIDS 335 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 138/362 (38%), Gaps = 54/362 (14%) Query: 1 MNKKVLTLSAV--MASMLFGAAA----------------------HAADTRIGVTIYKYD 36 M ++ L A+ M + L A IG++ Sbjct: 1 MKRRQFALFAITLMLATLIAACGGTPTTTAPTAAPAPQPTTAPAPEGRKFTIGISNPFIS 60 Query: 37 DNFMSVVRKAIEQDAKAAPD----VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 92 + + + +++ + K + +L++ + D + Q Q+ L+ KGV A+ +N D Sbjct: 61 SEYRTQMIQSLIEVNKEYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSD 120 Query: 93 PAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA 152 +++A + + V+ ++E + + Y VG D KE I +A+ Sbjct: 121 VNGLNDTLQEAINKGIIVISVDQELNTPGV------YNVGIDQKEWAKISARWLAEKLG- 173 Query: 153 NQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAK 212 GQ VL++G PGHP AR V + L + + L +T WD A + Sbjct: 174 ---------GQGNIVLIEGFPGHPANVARMEGVEEVLKE-YPNIKVLGRETGKWDEATGQ 223 Query: 213 DKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALAL----V 268 M +L+ ++ D MA+GA++A+ A N S PV + + L L + Sbjct: 224 QVMSNFLASF--PNLDGYWTQ-DGMAIGAMQAVMAANPSKWPVLVGEGRCQFLQLWDQRL 280 Query: 269 KSGALAGTV-LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY-VGVDKDNL 326 K T+ + + + +A N+ GK + +P V V KDN Sbjct: 281 KEDPNFETIAVANPPGVSPTGLRIAINMLQGKQVDKSKLGGANGLSFVIPVPVIVTKDNF 340 Query: 327 AE 328 E Sbjct: 341 QE 342 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 111/316 (35%), Gaps = 29/316 (9%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS--QNDQSKQNDQIDV 77 A+ I + D V+ E AK +VQL + D ++Q ++ Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + + A+ I D A V+EKA +PV+ + + + +V TD+ + Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILID-----SPVKTDKYVSFVATDNIK 157 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 + + D + + G+ + ++ +PG R L +K + Sbjct: 158 AAEMAADKLGELLG----------GKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQ 207 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVF 256 + +M D +A ++ L+ + N+ +G A+K + + V Sbjct: 208 IITTQYSMGDKNRALNQALDILTAH--PDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVV 265 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G D + +K + +++ + ++A + GK K V Sbjct: 266 GFDISQATINAIKENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVP---------KRVDT 316 Query: 317 PYVGVDKDNLAEFSKK 332 + KDN+ E K+ Sbjct: 317 GVTVMTKDNVDEVVKE 332 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 75/337 (22%), Positives = 126/337 (37%), Gaps = 36/337 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR-IGVTIYKYDDNFMSVVRKAIEQDAKA--APDV 57 MN + L+A + + L + A + +GV + + F + K E AK P V Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++ S+ D + Q QI+ +A V + +N DP V++KAR + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AV 113 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + V +D+ +G +A+ G+ V++ G P Sbjct: 114 VAVDVGAVGADATVMSDNAMAGAESCKFMAQQLG----------GRGNVVIVNGPP-VTA 162 Query: 178 AEARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 AR K L N GIK A + M L+ KI+ V A ND Sbjct: 163 VSARVAGCKKVLGNYPGIKL-LSDNQDAHGSRDGGMETMANLLTAH--KKIDAVFAINDP 219 Query: 237 MAMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGA--LAGTVLNDANNQAKATFDLAK 293 +GA A+K +S + + VD P+A +K A + + A + Sbjct: 220 TGIGAELAVKQAGRSDVKLIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGY 279 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++ +GK A V +P V K N+A ++ Sbjct: 280 DILNGKRPAKSQ--------VLLPTPAVTKANVASYT 308 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 135/334 (40%), Gaps = 37/334 (11%) Query: 3 KKVLTLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK---AAPD 56 KKVL L ++ G + + +T +G+ + +M + + E AK Sbjct: 2 KKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDGT 61 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + + + ++ S Q + ++ L+A+GV A+ + ++ A + + +P+V ++E Sbjct: 62 IDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDRE 121 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + A V D+ +G+ G+ + G + V + G P + Sbjct: 122 LTNDA-----ATVVVKGDNYGAGVNAGEYFMEQLG----------GNGKVVEIAG-PSNS 165 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 + R+ + + G E + + + T + M+ L+ +I+ V +D Sbjct: 166 VTQQRSDGFREAIE--GSDIEIVASQSGEFSTETSLQVMENILTSQ--PEIDAVYTQDDG 221 Query: 237 MAMGAVEALKAHNKSSI-PVFGVDALPEALALV-KSGALAGTVLNDANNQAKATFDLAKN 294 MA+G ++A+ N++ I + GV + ++ G + T L K + + Sbjct: 222 MALGVLQAINEANRTDIQFITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGAD 280 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 LA+G+ D+ V VP V KDN+ + Sbjct: 281 LANGEDP--------DSAEVVVPATPVTKDNVDD 306 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 69/301 (22%), Positives = 111/301 (36%), Gaps = 19/301 (6%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 G ++Y D F + K + A +++ +D +ND ++ L+ GV Sbjct: 47 EKLTFGWSVYTRDQTFFQQLEKGVVDKATEL-GIEIKTHDQKNDSNEMVTGCTNLINSGV 105 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 AL + P A G ++ A +++PV+ + DK + +D K G + G Sbjct: 106 DALIVCPCKPEAMGNIVTLAHQKDIPVIITDIGDGDS-----DKDAIIISDMKAGGQMAG 160 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 A+ + ++K E A+ R +E+ G + Sbjct: 161 VYTAELLKEKSITS------GEVAIIKCEESAVYAQRRNEGYKEEIEKAGFTV--AKELV 212 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPE 263 A + M L+ I V A ND MA GA AL+ K+ + V G + Sbjct: 213 ANSKQEEGYTVMKDILAS--NPDIVAVFAANDPMAAGAASALQEAGKTDVIVTGFNGDDI 270 Query: 264 ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 AL + G + GTV D +LAK +GK D K V VP + K Sbjct: 271 ALEYIADGKMMGTVAQDVLGIGAKGVELAKLAVEGKDIPYD---NADKKEVYVPVSFIGK 327 Query: 324 D 324 D Sbjct: 328 D 328 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 286 7e-76 UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Ta... 285 2e-75 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 278 3e-73 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 277 3e-73 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 273 6e-72 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 273 8e-72 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 269 8e-71 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 269 1e-70 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 268 1e-70 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 268 2e-70 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 266 1e-69 UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein p... 265 2e-69 UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel... 265 2e-69 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 264 3e-69 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 262 1e-68 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 261 2e-68 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 260 6e-68 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 259 8e-68 UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=... 259 1e-67 UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostri... 259 1e-67 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 258 1e-67 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 258 2e-67 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 258 2e-67 UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm... 258 3e-67 UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostri... 256 5e-67 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 256 6e-67 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 255 1e-66 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 255 1e-66 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 255 2e-66 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 253 5e-66 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 253 6e-66 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 253 6e-66 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 253 6e-66 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 253 7e-66 UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=... 251 2e-65 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 251 2e-65 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 251 3e-65 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 250 4e-65 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 250 7e-65 UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=... 250 7e-65 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 250 7e-65 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 249 1e-64 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 248 1e-64 UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clo... 248 1e-64 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 248 2e-64 UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=... 248 2e-64 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 247 3e-64 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 246 6e-64 UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=... 246 7e-64 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 246 8e-64 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 245 1e-63 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 245 2e-63 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 245 2e-63 UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding... 245 2e-63 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 244 3e-63 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 244 3e-63 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 243 7e-63 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 241 2e-62 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 241 2e-62 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 241 2e-62 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 241 3e-62 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 240 5e-62 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 240 5e-62 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 240 5e-62 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 240 6e-62 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 240 8e-62 UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacter... 239 9e-62 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 239 1e-61 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 238 2e-61 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 238 2e-61 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 238 3e-61 UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic g... 237 3e-61 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 236 8e-61 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 235 1e-60 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 235 2e-60 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 235 2e-60 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 235 2e-60 UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clo... 235 2e-60 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 234 2e-60 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 234 3e-60 UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcri... 234 4e-60 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 232 1e-59 UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=... 232 2e-59 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 231 2e-59 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 231 2e-59 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 231 2e-59 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic com... 231 3e-59 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 231 3e-59 UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional... 231 4e-59 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 230 5e-59 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 230 6e-59 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 230 7e-59 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 229 1e-58 UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepI... 229 1e-58 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 229 1e-58 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 228 2e-58 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 228 2e-58 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 228 3e-58 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 228 3e-58 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 227 4e-58 UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verruco... 227 4e-58 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 227 5e-58 UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachy... 227 6e-58 UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette... 226 8e-58 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 226 8e-58 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 226 9e-58 UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clo... 226 1e-57 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 226 1e-57 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 225 1e-57 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 225 1e-57 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 225 1e-57 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 225 1e-57 UniRef50_A6TRZ6 Monosaccharide-transporting ATPase n=1 Tax=Alkal... 225 2e-57 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotro... 225 2e-57 UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clo... 225 2e-57 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 225 2e-57 UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional... 225 2e-57 UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=... 224 3e-57 UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 ... 224 3e-57 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 224 3e-57 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 224 4e-57 UniRef50_C9Y333 D-xylose-binding periplasmic protein n=20 Tax=Pr... 224 4e-57 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 224 4e-57 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 224 5e-57 UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB... 224 5e-57 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 223 5e-57 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 223 6e-57 UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=... 223 6e-57 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 223 7e-57 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 223 7e-57 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 223 7e-57 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 223 7e-57 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 223 8e-57 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 223 9e-57 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 222 1e-56 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 222 1e-56 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 222 1e-56 UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC2... 222 2e-56 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 221 2e-56 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 221 2e-56 UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=... 221 2e-56 UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE... 221 2e-56 UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding... 221 3e-56 UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=B... 221 3e-56 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 221 3e-56 UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic com... 220 4e-56 UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=... 220 5e-56 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 220 5e-56 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 220 5e-56 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 220 5e-56 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 220 6e-56 UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=... 220 6e-56 UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clo... 220 6e-56 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 220 6e-56 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 220 6e-56 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 220 7e-56 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 219 7e-56 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 219 7e-56 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 219 7e-56 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 219 8e-56 UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=... 219 8e-56 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 219 9e-56 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 219 1e-55 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 219 1e-55 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 219 1e-55 UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=... 219 1e-55 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 218 2e-55 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 218 2e-55 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 218 3e-55 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 218 3e-55 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 218 3e-55 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 217 4e-55 UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ... 217 5e-55 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 216 7e-55 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 216 7e-55 UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobact... 216 7e-55 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 216 8e-55 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 216 8e-55 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 216 1e-54 UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coproco... 216 1e-54 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional... 216 1e-54 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 215 1e-54 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 215 1e-54 UniRef50_C6J071 ABC-type ribose transport system n=7 Tax=Bacteri... 215 2e-54 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 214 4e-54 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 214 4e-54 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminoc... 214 5e-54 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 213 6e-54 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 213 6e-54 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 213 6e-54 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 213 7e-54 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 213 8e-54 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 213 9e-54 UniRef50_A9KQP6 Putative solute-binding component of ABC transpo... 213 1e-53 UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=... 213 1e-53 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 212 1e-53 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 212 2e-53 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 211 2e-53 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 211 3e-53 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 211 3e-53 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 211 3e-53 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 211 3e-53 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 211 3e-53 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 211 4e-53 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 210 4e-53 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 210 6e-53 UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding... 210 6e-53 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 210 6e-53 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 210 6e-53 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 210 7e-53 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 209 8e-53 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 209 8e-53 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 209 1e-52 UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=... 209 1e-52 UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic sol... 209 1e-52 UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteob... 209 1e-52 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 208 2e-52 UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostri... 208 2e-52 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 208 2e-52 UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding... 208 2e-52 UniRef50_C7IGF5 ABC-type sugar transport system periplasmic comp... 208 3e-52 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 208 3e-52 UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ... 208 3e-52 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 207 4e-52 UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=... 207 4e-52 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 207 5e-52 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 207 6e-52 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 207 6e-52 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 207 6e-52 UniRef50_B1VWK1 Putative ABC transporter solute-binding protein ... 207 6e-52 UniRef50_B1QV54 ABC-type sugar transport system, periplasmic com... 207 6e-52 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 207 6e-52 UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0... 206 6e-52 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 206 9e-52 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 206 9e-52 UniRef50_A7NMH5 ABC-type sugar transport system periplasmic comp... 206 9e-52 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 206 9e-52 Sequences not found previously or not previously below threshold: >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 286 bits (733), Expect = 7e-76, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 141/330 (42%), Gaps = 44/330 (13%) Query: 3 KKVLTLSAVMASMLFGAA----------------------AHAADTRIGVTIYKYDDNFM 40 +++L++ + M+ G + D +IGV++ ++ F Sbjct: 5 RRLLSVLLLAIFMITGCSIEGQNNKEESKESGVEEKASETKTDGDMKIGVSLSTLNNPFF 64 Query: 41 SVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 100 +R+ +E+ A +V+ ++ D+QND S QN+Q++ L+ +GV + IN VD A T + Sbjct: 65 VSIREGVEEAAGK-ENVETVITDAQNDSSTQNNQVEDLITQGVDLIVINPVDSTAIATSV 123 Query: 101 EKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK 160 EKA N+PV+ ++ + L ++ +++ E G + G+ I + N Sbjct: 124 EKANEANIPVICVDRGSDQGEL-----VSFIASNNVEGGKLAGEYILEKVGEN------- 171 Query: 161 DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLS 220 + + L+G PG R + K L TA +D A+ M+ L Sbjct: 172 ---AEVIQLEGIPGASSTRERGEGFEEA---TNGKINLLASQTANFDRAEGMTVMENLLQ 225 Query: 221 GPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLND 280 ++ V ND MA+GA EA+KA + + G D +A+ V+ G L+ TV Sbjct: 226 AH--PDVKAVFCQNDEMALGASEAIKASG-KDVTIVGFDGNEDAIKAVEEGNLSATVAQK 282 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKID 310 K + A G+ + + ++ Sbjct: 283 PKEMGKLAIETAIKYLKGEEVEETVDSPLE 312 >UniRef50_P44883 D-galactose-binding periplasmic protein n=246 Tax=Bacteria RepID=DGAL_HAEIN Length = 331 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 222/332 (66%), Positives = 266/332 (80%), Gaps = 2/332 (0%) Query: 1 MNKK-VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M K VL+ A ++ +A+ AAD RIGVTIYKYDDNFMS++RK I+++AK ++L Sbjct: 1 MKKTAVLSTVAFAIALGSASASFAADNRIGVTIYKYDDNFMSLMRKEIDKEAKVVGGIKL 60 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 LMNDSQN QS QNDQ+D+LL+KGVKALAINLVDPAAA T+I KA+ N+PVVFFNK+P Sbjct: 61 LMNDSQNAQSIQNDQVDILLSKGVKALAINLVDPAAAPTIIGKAKSDNIPVVFFNKDPGA 120 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 KA+ SY++AYYVGTD KESG+IQGDLIAK W AN DLNKDG+IQFVLLKGEPGHPDAE Sbjct: 121 KAIGSYEQAYYVGTDPKESGLIQGDLIAKQWKANPALDLNKDGKIQFVLLKGEPGHPDAE 180 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT YVI+ELN KGI+TEQL +DT MWD A AKDK+DAWLS AN IEV+I+NND MA+ Sbjct: 181 VRTKYVIEELNAKGIQTEQLFIDTGMWDAAMAKDKVDAWLSSSKANDIEVIISNNDGMAL 240 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GA+EA KAH K +P+FGVDALPEAL L+ G LAGTVLND+ NQ KA L+ NLA GK Sbjct: 241 GALEATKAHGKK-LPIFGVDALPEALQLISKGELAGTVLNDSVNQGKAVVQLSNNLAQGK 299 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A +GT W++ ++VVR+PYVGVDKDNL +F K Sbjct: 300 SATEGTKWELKDRVVRIPYVGVDKDNLGDFLK 331 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 202/354 (57%), Gaps = 26/354 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD----------------TRIGVTIYKYDDNFMSVVR 44 M K T+ + +L +IGV +YK+DD F+S V+ Sbjct: 1 MKKFRWTMILSIIMLLISCGNGGEKPAAGGEAPAGGEAKKEIKIGVALYKFDDTFISSVK 60 Query: 45 KAI-----EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 AI E+ + + + D Q Q+ QNDQ+D + +G +A+N+VD AA + Sbjct: 61 DAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDTFITQGYDVIAVNMVDRTAASVI 120 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 I+KA+ +PVVFFN+EP + + +D+ YYVG ++ESG IQG++ A ++ AN D N Sbjct: 121 IQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEESGTIQGEVAADYFKANPDADKN 180 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL 219 KDG+IQ+V+L+GEPGH DA RT Y IK L G + ++L DTA+W A ++KM AW+ Sbjct: 181 KDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQVDKLASDTALWQRANGQEKMAAWI 240 Query: 220 SGPNANKIEVVIANNDAMAMGAVEALKAHNK----SSIPVFGVDALPEALALVKSGALAG 275 S +KIE+V+ANND MA+GA+EALKA IPV GVDA A +K+G L G Sbjct: 241 SA-FGDKIELVLANNDDMALGAIEALKAAGYLSDGKFIPVIGVDATAPAKDSLKAGLLYG 299 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 TVLNDA Q K FD+A LA + A+ D K + +PY V K+N+ +F Sbjct: 300 TVLNDARGQGKGIFDIAYALAKKENPAEKVQGITDGKYLWIPYQKVTKENVDKF 353 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 95/330 (28%), Positives = 158/330 (47%), Gaps = 37/330 (11%) Query: 14 SMLFGAAAH----------AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 +ML G + + IG + +DD ++S ++ +++ K DV+++ D Sbjct: 35 AMLVGCSGKQETAQTSGDKSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVD 94 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 + ND SKQ Q++ + + V A+ + VD +A +++KA N+P+V N+ Sbjct: 95 AMNDASKQLSQVENFIQQKVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD-- 152 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YVG++S ++GI+Q + +AK +G+ + ++ G+ GH RT Sbjct: 153 --KATAYVGSESIKAGIMQMEEVAKLL----------NGKGKIAIMNGQMGHEAQIKRTE 200 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + + K + + TA WD A+ M+ WL KI+ V+ NND MA+GA+ Sbjct: 201 GNKQVIK-KYPDMKVVLEGTAEWDRAKGMSLMENWLQS--GKKIDAVVCNNDEMAIGAIM 257 Query: 244 ALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+ K + V GVDA P+AL VK G L TV +A Q + ++A A G+ Sbjct: 258 ALEDEGKLDDVIVAGVDATPDALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKV- 316 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 K +PY V KDN+ E+ KK Sbjct: 317 --------EKFNWIPYELVTKDNVEEYIKK 338 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 273 bits (699), Expect = 6e-72, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 141/338 (41%), Gaps = 38/338 (11%) Query: 1 MNK--KVLTLSAVMASMLFGA-----------------AAHAADTRIGVTIYKYDDNFMS 41 M + +L + V A +L G A ++G + ++ F Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 42 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE 101 + ++++AK VQ+ + + ND + Q +Q++ L+ + V A+ +N D + T +E Sbjct: 61 AMSNGVQEEAKKL-GVQVTILNGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAVE 119 Query: 102 KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +A ++PV+ ++ ++ + A ++ ++S E+G + D + K Sbjct: 120 QANRAHIPVITLDRSVTKG-----NVACFIASNSVEAGKMAADELIKALG---------- 164 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 G+ Q V L+G G R +E+ K + TA +D +QA + M L Sbjct: 165 GKGQVVELQGVIGTSAEADREKGFDEEI-GKAPGIRVVARQTANFDRSQALNVMQNILQA 223 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDA 281 I+ V A ND MA+GA++A++ K +I + G+D EA+ V G L + Sbjct: 224 H--PNIQGVFAQNDEMALGALKAIQEAGKHNIKIVGIDGEKEAVNDVHKGLLYADIAQQP 281 Query: 282 NNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 + + A L +G+ N + P+ Sbjct: 282 VQEGILGVEYAVKLVEGEKVPKQVNSPLHLVEKNTPFT 319 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 273 bits (698), Expect = 8e-72, Method: Composition-based stats. Identities = 100/332 (30%), Positives = 163/332 (49%), Gaps = 26/332 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L +++V+ ML + A D +IGV++ +DDNF++++R++++ K +V Sbjct: 1 MKLKKLIVTSVLMCMLPA-SVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQ 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D++ D ++Q QI+ +++GV A+ +N VD +I+ A +P+VF N+ P Sbjct: 60 FEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRPE-- 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + YVG+DSK +G +Q + +AK +G+ ++L GE + Sbjct: 118 -VTLPAGMAYVGSDSKLAGKLQMEELAKLM----------NGKGNVMILMGELSNEATRD 166 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT V + + K + L TA W +A D W +I+ + +NND MA+G Sbjct: 167 RTRGVEE-VAAKYPGIKILDKQTAKWGRKEAVDITTDW--ALTGQQIDAIASNNDEMAIG 223 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ ALK KS + V GVD P+AL +K G LA +V DA Q + A L G+ Sbjct: 224 AILALKQAKKSGVLVAGVDGTPDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEK 283 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 V +PY + K N EF+ K Sbjct: 284 VESN---------VLIPYQLITKANYQEFADK 306 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 74/335 (22%), Positives = 142/335 (42%), Gaps = 42/335 (12%) Query: 1 MNKKVLTLSAVMASMLFGAA-----------AHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K + +A+ L + D +IG+++ + F ++ + + Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 50 DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 +AK +++++ D+Q+D +KQ + ++ LL +GV AL IN D +A T ++ A +P Sbjct: 61 EAKKQ-GIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIP 119 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 VV ++ +++ V +D+ + G + D I + + L Sbjct: 120 VVTLDRSAENGKVETL-----VASDNVKGGQMAADFIVEQLGKG----------AKVAEL 164 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +G PG R + K +D K + TA +D + + M+ L I+ Sbjct: 165 EGVPGASATRERGSGFHKTADD---KLNVIAKQTADFDRTKGLNVMENLLQ--GNPDIQA 219 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 V A+ND MA+GA+EA+++ I V G D +A+ V++G ++ T+ K Sbjct: 220 VFAHNDEMALGAIEAIRSSG-KEILVVGFDGNEDAVKAVQAGDMSATIAQQPELIGKLAV 278 Query: 290 DLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 A+++ +GK K + P K Sbjct: 279 QAARDILNGKKV---------EKTIPAPLKLETKK 304 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 269 bits (688), Expect = 1e-70, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 142/329 (43%), Gaps = 30/329 (9%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQLLMNDS 64 L + V+ +M+ GA +IG + + + + + ++ A PDV L++ D Sbjct: 13 LAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLIVTDG 72 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 ND SKQ ++ L+A+G+K L I+ + A V+++A + VV +++ + Sbjct: 73 NNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP---- 128 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 +VG ++ G+ G+ +AK +G+ + L+G G R Sbjct: 129 --VTVHVGGENLPLGVGAGEFLAKKL----------NGKGNIIELQGTAGASATIDRNKG 176 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + + K + + + +A M+ + +I+ V A+ND MA+GA++ Sbjct: 177 FAEAIA-KHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235 Query: 245 LKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 L+A + + + V G+D A VK G LA T + A + A +A G+ + Sbjct: 236 LEAAGRLNEVAVVGIDGQETAFEAVKQGKLAATFVYP--FVAPEGIETAYKVAKGEEVPE 293 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +P V V DN+A+ K Sbjct: 294 ---------TITLPTVSVTPDNIADMIGK 313 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 120/346 (34%), Positives = 198/346 (57%), Gaps = 18/346 (5%) Query: 1 MNKKV--LTLSAVMASMLFGAAAHAAD-----TRIGVTIYKYDDNFMSVVRKAIEQDAKA 53 M ++ + L+ +A+M+ G A +IGV IY+ DD F+S + ++E K Sbjct: 4 MKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENAIKD 63 Query: 54 AP-----DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 V + + D++N QS QNDQ+D + KG A+ +N+VD A +++KA+ + Sbjct: 64 KEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKEAGI 123 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQIQFV 167 P++FFN+EP + + +++ YYVGTD++E+G ++G ++A W + + D N DG++Q+V Sbjct: 124 PIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKLQYV 183 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +L+GE H D+ RT Y +K + +GI TE+L T W + A + M W+ G ++I Sbjct: 184 MLEGEQVHQDSLIRTEYSVKTILKEGIVTEKLASGTGNWMRSPAYELMQEWI-GQYGSQI 242 Query: 228 EVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 EVV++NND MAMGA+EAL + + V G+D + L + G + GTV+NDA Q Sbjct: 243 EVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTEDGLEKIIKGEMEGTVMNDARGQ 302 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A++ +A A+GK ++ + VRVP+ V DN+ EF Sbjct: 303 AESILGIACACAEGKDPKQEVP-ELKGQYVRVPHSPVTADNVQEFI 347 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 93/344 (27%), Positives = 167/344 (48%), Gaps = 38/344 (11%) Query: 1 MNKK----VLTLSAVMASMLFGAAAHA---------ADTRIGVTIYKYDDNFMSVVRKAI 47 M K ++ L ++++ L + ++GV+I +DD F++ + + Sbjct: 1 MKKFRNYVIMGLVSMLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGM 60 Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN 107 ++ A+ D++L D++ D +KQ +Q++ + +G + + VD +AA + A Sbjct: 61 KKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNG 120 Query: 108 VPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 +V+ N+ P + D AYYVG++ K++GI+Q + +A+ G+ V Sbjct: 121 TKIVYVNRNPG----NLPDGAYYVGSEEKKAGIMQMEYLAEKMG----------GKGNIV 166 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +L G+ + RT V + + K + L T +W K + WL+ N+I Sbjct: 167 ILMGKLDNEGTIKRTEGVEE-IAKKYPDIKILDKQTGLWQRTDGMAKTENWLNKY-GNEI 224 Query: 228 EVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 +++NND MA+GAV+ALK K+ I V GVDA P+ LA + +G ++ TV DA+ Q Sbjct: 225 NAIVSNNDDMALGAVQALKDSGKTGIFVIGVDATPDGLAALAAGDISATVFQDADGQGGG 284 Query: 288 TFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 ++AK A+G+ T VP+ V +N+ EF K Sbjct: 285 AVEVAKKAANGETVVKET---------WVPFKLVTPENINEFKK 319 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 34/318 (10%) Query: 1 MNKKVLTLSAVMASMLFGAA------------AHAADTRIGVTIYKYDDNFMSVVRKAIE 48 M K V + + +L + + + IG+++ ++ F ++K IE Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 49 QDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 ++AK +++++ D+QND SKQ ++ L+ +GV AL IN D +A T +E A V Sbjct: 61 KEAKKR-GMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGV 119 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 PVV ++ + +++ V +D+ + G + IA + Sbjct: 120 PVVTIDRSAEQGKVETL-----VASDNVKGGEMAAAFIADKLGKG----------AKVAE 164 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+G PG R + + D+ K + + +A +D + M+ L G I+ Sbjct: 165 LEGVPGASATRERGSGFHN-IADQ--KLQVVTKQSADFDRTKGLTVMENLLQGH--PDIQ 219 Query: 229 VVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKAT 288 V A+ND MA+GA+EA+ + I V G D +ALA +K L+ TV K Sbjct: 220 AVFAHNDEMALGALEAINSSG-KDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLA 278 Query: 289 FDLAKNLADGKGAADGTN 306 + A ++ GK + Sbjct: 279 TEAADDILHGKKVQKTIS 296 >UniRef50_UPI0001BCF79F D-galactose-binding periplasmic protein precursor n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF79F Length = 333 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 157/331 (47%), Positives = 223/331 (67%), Gaps = 3/331 (0%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + +L + A+ ++ RIGVTIYKYDDNFM ++RK + ++ ++ Sbjct: 4 MKRSLLNAFVYTLMLGANASYAQSEPRIGVTIYKYDDNFMMLMRKEMNKEMANFSHLKWF 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MND+QN Q KQ QI+ LL V LA+N+V + T++EKA+ NVPVVFFN+ + Sbjct: 64 MNDAQNSQVKQLKQIETLLKHQVNVLAVNIVHANESKTIVEKAKLSNVPVVFFNRSSDNQ 123 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 AL+SYDKAY+V +D KE+G IQG+LIAK W +N +DLNKDG++QFVLLKGEP A Sbjct: 124 ALESYDKAYFVSSDPKEAGRIQGELIAKVWKSNPDFDLNKDGKLQFVLLKGEPSDVSA-E 182 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ V++ LN +G++ E++ DTA W A++KM+ WL A +IEVVI+NND MA+G Sbjct: 183 RSQAVVESLNQQGVQAEEIYSDTARWRRTLARNKMNEWLVENRAAEIEVVISNNDEMAIG 242 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A++AL ++ +P+FG+DALPE LAL+K G +AGTVLND++ QAKA L NLA GK Sbjct: 243 ALDAL-NAHEKRLPIFGIDALPETLALMKKGEIAGTVLNDSSAQAKAVVKLVSNLAQGKP 301 Query: 301 AADGTNWKI-DNKVVRVPYVGVDKDNLAEFS 330 A T W+ +K + +P++G+DK+NL +F Sbjct: 302 ALKDTQWESHSSKTIYLPHIGIDKENLGQFL 332 >UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY38_9FIRM Length = 339 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 146/330 (44%), Positives = 209/330 (63%), Gaps = 15/330 (4%) Query: 1 MNKKV-------LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA 53 M K + L A++ S+ A + +IGV YKYDD +MS VR A+E+ AK Sbjct: 1 MKKVITWCAIFCLFCLALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKE 60 Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 +V+L++NDSQNDQ+KQNDQIDV++ KGV L IN+VD AA V++KA+ N+P+V F Sbjct: 61 HSNVELIVNDSQNDQAKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLF 120 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 N+EP+ + +YDKA +VGT +KE+GIIQG +IA+ W +++ +D N +G++ +V+L G+P Sbjct: 121 NREPATDVVKAYDKARFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDP 180 Query: 174 GHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 +P+A ART Y + L + I+ +L A WD +AK DAWL +A+ I+V+I+N Sbjct: 181 ENPEAIARTKYAVDTLTEAKIEVNKLGDQVANWDPDKAKTATDAWL-AKDADNIDVIISN 239 Query: 234 NDAMAMGAVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 ND+MA GA+ AL+ IPVFGVDA EA+ L+ G + GTV DA AK Sbjct: 240 NDSMASGAIAALQGAGFNTDAKADKKIPVFGVDATEEAVDLIARGIMTGTVKQDAEGMAK 299 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 A F L+ N GK DGT++K D+ V V Sbjct: 300 AVFALSYNAGQGKDFLDGTDYKYDDTQVAV 329 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 76/324 (23%), Positives = 134/324 (41%), Gaps = 33/324 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAH--------------AADTRIGVTIYKYDDNFMSVVRKA 46 M+K + +L A A + IG+ + + F ++K Sbjct: 1 MSKLMKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKG 60 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 E++A+ + L+ D+Q+D +KQ I+ L+ K VK + +N D A ++ A Sbjct: 61 AEEEAQKQ-GLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAA 119 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV ++ + + A +V +D+ G + + + + Q Sbjct: 120 GIPVVTLDRSVNGG-----EVASHVASDNVAGGKMAAEYLLEKIG----------NQGDV 164 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 V L+G PG A R + D+ + + A +D A+ M+ L Sbjct: 165 VELEGIPGASAARERGQGFHDVI-DQAKDVKVVGRQPADFDRAKGLSVMENILQA--NKN 221 Query: 227 IEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 ++ V A+ND MA+GAV+AL+A + V G DA +A+ VK+G ++ TV K Sbjct: 222 VKGVFAHNDEMALGAVQALEAAGMKDVTVVGFDATDDAVNAVKAGKMSATVAQKPKLIGK 281 Query: 287 ATFDLAKNLADGKGAADGTNWKID 310 D AK + DG+ +D Sbjct: 282 TAVDAAKKIIDGQPVDKSLPVPLD 305 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 156/341 (45%), Gaps = 35/341 (10%) Query: 1 MNK--KVLTLSAVMASMLFGAAAHA------ADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 M K ++L + A +L A RIG++I DD F + + A+E +AK Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 PD L++ +++ D ++Q QI L+A+ A+ + VD + + A +P++ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 N + D A YVG+DS SGI++ + K +G+ V+LKGE Sbjct: 121 VNNFLK----NQDDAAAYVGSDSITSGIMEAEYAVKQL----------NGKGNVVILKGE 166 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 P H A RT + L + + + W + W+ N K + ++A Sbjct: 167 PNHETAIKRTEGFKQVL-QNYPEIKIIDEQYGDWKRTLGMQITENWIK--NGTKFDAILA 223 Query: 233 NNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 NND MA+GA+ ALK +N +++ V G+DA P+AL L+K G+L TV +A Q Sbjct: 224 NNDEMAIGAIMALKENNLINNVFVGGIDATPDALKLLKEGSLKVTVFQNAAGQGSEAIKA 283 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A L G+ NK + VPY V ++ ++ K Sbjct: 284 AYKLVKGEKI---------NKKIFVPYELVVPNDADKYLGK 315 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 261 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 138/316 (43%), Gaps = 29/316 (9%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 +G T+ + F+ V ++++A+ A ++L+ D++ KQ +Q++ Sbjct: 30 TSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKA-GIELITVDAERSALKQVEQVE 88 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 +A+ V A+ +N + A+ + KA +P++ N E S K + +VG+D Sbjct: 89 SFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSSKP------SAFVGSDDV 142 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ES I IA G+ V++ G G R + L + Sbjct: 143 ESARIAMKFIADKLG----------GKGNVVMMHGYMGQAAQIKREQGAREILK-QYPNL 191 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPV 255 + L T WD A+A M+ W+ ++I V A+ND M +GAV+AL + V Sbjct: 192 KLLAHQTGEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLKDKVIV 250 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 +DA+P+AL VK G+L TV +A Q A A G+ +K Sbjct: 251 VSIDAIPDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQPF---------DKETL 301 Query: 316 VPYVGVDKDNLAEFSK 331 VP+ V KDNL++F K Sbjct: 302 VPFQLVTKDNLSKFLK 317 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 260 bits (665), Expect = 6e-68, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 163/335 (48%), Gaps = 29/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +V+AS +F + AAD +IGV++ +DDNF++ +R IE AK V + Sbjct: 1 MKK---LALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKS-VDVQ 56 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D +N+ Q +QI +A GV A+ +N VD A ++ A +P+++ N++P Sbjct: 57 IEDGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPIN- 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D +V ++ + SG +Q + + + G+ V++ GE + A Sbjct: 116 VNQLPDNQAFVASNEEVSGTLQTEEVCRLLG----------GKGNVVVMMGELSNQAAIQ 165 Query: 181 RTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT + + + + + TA W + D M WLS + + VI+NND MA+ Sbjct: 166 RTKDIHDVIKRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSA--GLEFDAVISNNDEMAI 223 Query: 240 GAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA + S+ V G+DA P+ALA +KSG L TV A Q D A LA Sbjct: 224 GAIQALKASGRKMDSVVVAGIDATPDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAK 283 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ ++ V VP+ V NL ++ K Sbjct: 284 GENV---------DQKVWVPFELVTPANLDKYLSK 309 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 44/347 (12%) Query: 2 NKKVLTLSAVMASMLFGAAAHAAD---------------TRIGVTIYKYDDNFMSVVRKA 46 NK +L +++ S+L A + IGV+I D F++ ++ A Sbjct: 4 NKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYMQDA 62 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 ++++A PD + + +D+QND ++Q Q++ +++ V A+ +N VD +A ++ Sbjct: 63 MKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMVNDA 122 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +P++ N+ +VG++S +SG++Q + +AK + + Sbjct: 123 GIPIIIANRTFDGVD----QATAFVGSESIQSGLLQMEEVAKLL----------NNEGNI 168 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 ++ GE GH RT K++ ++ E + TA +D ++ M+ WL+ + Sbjct: 169 AIMDGELGHEAQIMRTEG-NKQIIEEHDGLEVVLQGTAKFDRSEGMRLMENWLNS--GTE 225 Query: 227 IEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 I+ V+ANND MA+GA+ AL+A K + V G+DA P AL +K G L TV DA Q Sbjct: 226 IDAVVANNDEMALGAILALEAVGKLDDVIVAGIDATPAALEAMKEGKLDVTVFQDAKGQG 285 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + +A A+G+ D +PY V +N+ E+ K Sbjct: 286 ATSVKVAVQAANGEDVEDA----------MIPYELVTPENVEEYEAK 322 >UniRef50_A3MZG8 D-galactose-binding periplasmic protein n=5 Tax=Actinobacillus RepID=A3MZG8_ACTP2 Length = 323 Score = 259 bits (663), Expect = 1e-67, Method: Composition-based stats. Identities = 149/329 (45%), Positives = 224/329 (68%), Gaps = 6/329 (1%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K + AV S+ A +GV++Y+YDDNF+ ++ + P + LL Sbjct: 1 MKKLAICSLAVGISLSSSVIAQD---TLGVSLYQYDDNFIRLMHDELISYTSENPSLSLL 57 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 MND+QN Q QN+Q+ L+ V LA+NLVDP A TVI KA+ N+P++ FNK+P K Sbjct: 58 MNDAQNSQFVQNNQVQTLVNHKVDVLAVNLVDPNAWATVIGKAKDANLPIILFNKDPGAK 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A++SY K YYVG++ +E+G Q +IA HW +++ DLN DG++Q+ +LKGE GHPDAE Sbjct: 118 AINSYKKVYYVGSNPEEAGKAQAKMIANHWKSSEALDLNHDGKMQYAVLKGEVGHPDAEK 177 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT VI+EL +GIKTEQL L++A+W+ AK K++AWLS P IEV+I+NND+MA+G Sbjct: 178 RTKAVIEELKTQGIKTEQLALESAVWNKEIAKAKVNAWLSTPQN-NIEVIISNNDSMAIG 236 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+E + +K+ +P++GVDA PEAL L++ G LAGTV ND +Q++A D ++ LA G+ Sbjct: 237 ALEVVTEKDKA-LPIYGVDATPEALNLIRKGKLAGTVTNDWRSQSRAIIDFSRLLAKGE- 294 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + + WK++N+V+R+P + +D+ N+++F Sbjct: 295 LPENSQWKLENRVLRIPAMSIDRSNISDF 323 >UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A6BKA3_9FIRM Length = 355 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 190/341 (55%), Gaps = 14/341 (4%) Query: 2 NKKVLTLSAVMASMLFGAAAHAAD----TRIGVTIYKYDDNFMSVV----RKAIEQDAKA 53 + ++ + ++A ++ G + RIGV Y DD F++ + ++ +++ Sbjct: 18 RRSMIAVILLIAFLITGCEDKSVKRDHIIRIGVVTYTQDDPFINAMTDQLKENLKKMETD 77 Query: 54 APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 + + + ++Q QN+ ++ ++ G L +NLVD A +I A+ +++PV+FF Sbjct: 78 LMKIITTVKNGDDNQQDQNEIVEEMIDAGCDVLCVNLVDRTAPSRIIRMAKQEDIPVLFF 137 Query: 114 NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEP 173 N+EP R+ L ++K YY+G ++++SGI+QG+++A + + D N+DG+IQ++LL+GE Sbjct: 138 NREPVREDLMQWEKLYYIGCNAEQSGIMQGEIVADYIKNHPEVDKNQDGKIQYILLEGEA 197 Query: 174 GHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN 233 GH DA +RT Y +K L ++GI E+L A W+ QA+++M + ++IE+VI+N Sbjct: 198 GHQDAISRTDYSVKTLLEQGIDLEKLSYQFADWNRGQAENRMSRLI-EQYGDEIELVISN 256 Query: 234 NDAMAMGAVEALKAHN---KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 ND MA+GAV A + ++ +FG+D L +AL +K+G + GTV ND +QA Sbjct: 257 NDEMALGAVAAWQKAGYDCRNWPVIFGIDGLDDALEAIKTGKMKGTVYNDKEDQAMELAK 316 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 L+ + GK + + Y VD N+ F K Sbjct: 317 LSVEIVCGKD--TNRKHLKEGRYYVSEYCRVDSSNVDHFLK 355 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 129/313 (41%), Gaps = 29/313 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 IG+ + + F V+ +++ A ++L + D+Q+D + Q ++ L+ Sbjct: 61 GSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEH-GIELYITDAQDDPTIQMKDVENLIT 119 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 K A+ I+ D A + IE +PV ++E + + ++G D+ +SG Sbjct: 120 KKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDREANGG-----EVISHIGYDAIKSGR 174 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + G + G+ + V ++G G A+ R+ + + D E + Sbjct: 175 MAGQYLVDTLG----------GKGKIVEIQGIMGTNVAQNRSQGFNEVMKDN-PDMEIVA 223 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPV-FGVD 259 A +D A+ M+ L +I+ + A ND M +GA+EA++A ++ V G D Sbjct: 224 CQVADFDRAKGMSVMENILQA--NPEIDGLYAANDEMLLGALEAMEAAGRTDEIVKIGCD 281 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 A+ + L +K+G + T+ KA + A + +GK V + Sbjct: 282 AIDDTLDAMKAGKVDATIAEPPFFLGKAILNTAYDYLEGKQV---------EPYVILDNQ 332 Query: 320 GVDKDNLAEFSKK 332 V +D + K Sbjct: 333 LVTQDTVDSLVTK 345 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 39/332 (11%) Query: 5 VLTLSAVMASMLFGAA--------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 + TL+A + L + D ++GV++ + F VR I+ AK Sbjct: 19 LFTLTACGGTGLSSKSDSNTKVTKKAPKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKN-K 77 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + ++D+QND +KQN I+ L+ K V L IN VD +A ++ A +PV+ ++ Sbjct: 78 TNVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPAVKDANDAGIPVITVDR- 136 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + D V ++S + G + + + + + L+G PG Sbjct: 137 ----SSDGGKVLTLVASNSTKGGQMAAKYMIEKLGKD----------AKIAELQGIPGAS 182 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 R K + + TA +D A+ + L I + + ND Sbjct: 183 ATRERGKGFDGAAKG---KLDIVSKQTAGFDRAKGLTVTENILQ--GNGDIVGIFSQNDE 237 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 MA+GAV+A+KA K I + G D + + VK+G +A TV + A + Sbjct: 238 MALGAVQAVKAAGKK-ITIVGFDGEADGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHF 296 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 +GK K V P V ++ + Sbjct: 297 NGKTVK---------KNVESPLSLVTTEDANK 319 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 123/319 (38%), Positives = 179/319 (56%), Gaps = 9/319 (2%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK-----AAPDVQLLMNDSQNDQSKQN 72 + RIGVT+Y+ D F+S++ + AK + L + D +Q QN Sbjct: 35 SESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITLNILDGTGNQGTQN 94 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 +Q+D LA+G A+ +N VD AA +I+KAR ++PV+FFN+EP + + + YYVG Sbjct: 95 EQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVGEDMQRWQNVYYVG 154 Query: 133 TDSKESGIIQGDLIAKHWAANQGW-DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 +D +E+G +QG ++ + N D N DG+IQ+V+L+GEPGH DA RT I L Sbjct: 155 SDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDATLRTESCIAALTS 214 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK-IEVVIANNDAMAMGAVEALKAHNK 250 GI E+L + A W AQA KM WL+ IEV+ NND MA+GA++A A Sbjct: 215 AGIDVEKLASEPANWQRAQASAKMAQWLADEELRDRIEVIFCNNDDMALGAIDAYHAAEI 274 Query: 251 SSIPV-FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI 309 S +PV G+DA P AL ++ G+LAGTV NDA QA+A FDLA L+ G + + Sbjct: 275 SELPVIVGIDATPPALMAIQDGSLAGTVRNDAQGQAQAIFDLAYALSTGANPQEAVPM-L 333 Query: 310 DNKVVRVPYVGVDKDNLAE 328 + + V P+ V N+ + Sbjct: 334 EGQYVWAPHSIVTIGNVMQ 352 >UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein n=15 Tax=Firmicutes RepID=C6CXV0_PAESJ Length = 366 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 148/320 (46%), Positives = 201/320 (62%), Gaps = 9/320 (2%) Query: 15 MLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQ 74 + A + +GV IYK+DD FM+ VR AIE A + ++ + DSQN Q QND+ Sbjct: 48 TAAESPAVKKEPTVGVAIYKFDDTFMTGVRNAIE--AASQGVAKVDIVDSQNSQPTQNDK 105 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 +D+ + K A+AIN VD AA +I+KA+ N PVVFFN+EP + ++ +D YYVG Sbjct: 106 VDLFITKKYNAMAINAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAK 165 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 ++ESG + G+LI +W A+ D NKDG++Q+++LKGEPGH DAE RT Y I+ + D GI Sbjct: 166 AEESGTMSGELIIDYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGI 225 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---- 250 E+L DTAMWD +A+DKM +LS +KIE V+ANND MA+GA+EALKA Sbjct: 226 GVEKLAEDTAMWDRVKAQDKMATFLSAH-GDKIEAVLANNDDMALGAIEALKAAGYFKDG 284 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNW--K 308 +PV GVDA AL + G L GTVLNDA NQ AT LA LA+G+ + Sbjct: 285 KFMPVVGVDATAAALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFDI 344 Query: 309 IDNKVVRVPYVGVDKDNLAE 328 D+K V VPY + KDN+++ Sbjct: 345 TDSKYVWVPYKKITKDNMSD 364 >UniRef50_A5KK65 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5KK65_9FIRM Length = 343 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 121/346 (34%), Positives = 187/346 (54%), Gaps = 18/346 (5%) Query: 1 MNKKVLTLSAVMASM---LFGAAAHAA-----DTRIGVTIYKYDDNFMSVVRKAIEQDA- 51 M KK L +A++ M L A +GVT Y +D F+S + +++ Sbjct: 1 MKKKKLLAAAIVLCMVIQLLCACGKQKISMSDKVYVGVTCYDQNDTFLSELLVCFKEELN 60 Query: 52 ---KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 K + + + ++ Q QNDQ+ L+ G L +NLVD A +I+ A+ +V Sbjct: 61 HLNKNGVETTVTVKNAAGSQRTQNDQVKELINAGCNVLCVNLVDRADPSEIIDVAKEHDV 120 Query: 109 PVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVL 168 P++FFN+EP + + +D+ YYVG D+K+SG++QG+L + N D NKDG+IQ+V+ Sbjct: 121 PIIFFNREPVAEDMRQWDRLYYVGADAKQSGVLQGELAVEMIRQNSQIDHNKDGKIQYVV 180 Query: 169 LKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIE 228 L+GE GH DA RT + LN GI+ E+L A W+ AQA+++M+ L KIE Sbjct: 181 LEGEAGHQDAIIRTENAVDTLNKNGIELEKLSYQIANWNRAQAQNRMEQMLGQYKN-KIE 239 Query: 229 VVIANNDAMAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 +V+ANND MA+GA++A K N + G+D L V+ ++AGTV ND QA Sbjct: 240 LVLANNDDMALGALDAYKNLNYTEALLPVFIGIDGTDMGLKAVEDSSMAGTVYNDKEGQA 299 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 +A L+ L GK A + + + +PY V K+N+ E+ K Sbjct: 300 RAIAKLSAALVIGKEAEEIKF--TNENYIYLPYSKVTKENVHEYLK 343 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 256 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 60/337 (17%), Positives = 136/337 (40%), Gaps = 26/337 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAA-----DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP 55 M K + + ++ +L A ++ + I ++ + V+ + +Q A+ Sbjct: 4 MKKSLFVVLVLVGLLLVSFTGLAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQL- 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 + + DSQND +K++ D ++A G A+ N D + +++A+ +PV ++ Sbjct: 63 GYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDR 122 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 + + L + +D+ G++ G+ K + L G Sbjct: 123 GINARGL----AVAQIYSDNYYGGVLMGEYFVKFLKEKYPDAKEIP----YAELLGILSA 174 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 R+ + D+ + + + +A +D A + L +I+ + ND Sbjct: 175 QPTWDRSNGFHSVV-DQYPEFKMVAQQSAEFDRDTAYKVTEQILQAH--PEIKAIWCGND 231 Query: 236 AMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGA-LAGTVLNDANNQAKATFDLAKN 294 AMA+GA++A +A ++ I +FG D + + +K G + T++ A+ + A Sbjct: 232 AMALGAMKACEAAGRTDIYIFGFDGAEDVINAIKEGKQIVATIMQFPKLMARLAVEWADQ 291 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 G+ + +V V V ++N+ +++ Sbjct: 292 YLRGERSFPE--------IVPVTVELVTRENIDKYTA 320 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 27/328 (8%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 + +L + AA RIGVTI + DDNFM+ VR +E+ A+ +VQL D+Q Sbjct: 3 FCKLFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARK-ENVQLQFEDAQ 61 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 D +Q +Q+ L++ V A+ + VD +A + A +P+V+ N+ P + L Sbjct: 62 GDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHPDERVL--P 119 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 V ++ E+G +Q +A+ G+ L+ G+ R+ V Sbjct: 120 KGVTTVASNDIEAGQLQMRYLAEKMG----------GKGTIALIMGDLAQNSTHDRSEGV 169 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + L D ++ TA W + D WL + ++ANND MA+GA AL Sbjct: 170 KQVLKD-YPGITIVEQQTAEWQRNKGMDLTSNWLLA--GRTFDAIVANNDEMAIGAAMAL 226 Query: 246 KAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 + K + + G+D LP+ LA +K G LA +V D QA A + G+ Sbjct: 227 QQAGKAKGEVAIVGIDGLPDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGEPVDA 286 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 V VP+ + + +A F + Sbjct: 287 E---------VWVPFQLITPEQVAVFEQ 305 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 125/348 (35%), Positives = 197/348 (56%), Gaps = 20/348 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA----------ADTRIGVTIYKYDDNFMSVVRKAIEQD 50 + K L+ V + + + + +IGVT+YK DD F+S + K IE Sbjct: 13 IKKLSGLLTVVSIFNVLSSCSANVKSANYSNDIKEIKIGVTLYKQDDAFISEISKNIEDI 72 Query: 51 AKAAPD-----VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 AK + + + + D++ + Q++Q+D +A+ + +N+VD AA +I+KA+ Sbjct: 73 AKEKENQGKYKIIVNVADAKGNLINQSNQVDKFVAQNYDVICVNMVDRTAASMIIDKAKS 132 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDGQI 164 N+P+VFFN+EP + ++ ++K YYVG D+++SG +Q ++I + N+ D N DG+I Sbjct: 133 ANIPIVFFNREPVEEDMERWNKLYYVGADAQQSGEMQANIIINAYKKDNKMVDKNGDGKI 192 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+L+GE GH D+ RT Y IK + GI+ E+L DTA W +AQA KM W+ Sbjct: 193 QYVMLEGEQGHQDSLIRTEYCIKTITQNGIELEKLADDTANWQSAQATTKMSQWIKN-FG 251 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDAN 282 +KIEVV +NND MA+GA+ A+ N V G+D LP+AL VK+G++ GT+LND+ Sbjct: 252 DKIEVVFSNNDEMALGAINAINDANIGGKKPLVVGIDGLPKALEAVKNGSMIGTILNDSK 311 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 QA A F+LA LA + K +R P+ V DN+ + Sbjct: 312 KQANAIFNLAYTLASHGNV-NSIEGLEKGKYIRTPHAEVTSDNVDLYI 358 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 75/323 (23%), Positives = 130/323 (40%), Gaps = 31/323 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + + A A D + + + ++ F ++ E AK L+ Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQD-TMAIVVSTLNNPFFVTMKDGAETRAKEL-GYNLI 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 59 VLDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D ++ +D+ G + G+ I + + + + L+G G A Sbjct: 119 -----DVVSHIASDNVVGGEMAGNFIVEKVGE----------KAKVIQLEGIAGTSAARE 163 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + + E L A +D + + M+ L+ ++ V A ND MA+G Sbjct: 164 RGEGFMNAVKGSH--MELLASQPADFDRTKGLNVMENLLAA--NPDVQAVFAQNDEMALG 219 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ A++A + + G D + +A V G LA T+ + + A + G+ Sbjct: 220 ALRAIQASG-KEVMIVGFDGTDDGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGEQ 278 Query: 301 AADGTNWKIDNKVVRVPYVGVDK 323 D + VP V K Sbjct: 279 VED---------YIPVPLKVVTK 292 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 157/335 (46%), Gaps = 30/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K ++ S+L G AAHA +GV++ +DDNF++V+R + +K V L Sbjct: 1 MKKFII---GAAMSVLLGTAAHAE--TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D+QND +KQ QI +A V A+ +N VD A + + A +P+V+ N++P Sbjct: 56 VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D +V +D +G ++ + + G+ V++ GE + A Sbjct: 116 DS-LPDGQAFVASDETVAGTLEAKEVCRLLG----------GKGNAVIMMGELSNQAARM 164 Query: 181 RTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT L D+ ++ TA W Q D + WLS + VIANND MA+ Sbjct: 165 RTQSAKDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAI 222 Query: 240 GAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA K S V GVDA +ALA +++G L TV DA Q K D A L Sbjct: 223 GAIQALKAAGKDMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVK 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G K V +P+ V +N+ ++ K Sbjct: 283 GDKI---------EKKVYIPFQLVTPENVKDYVAK 308 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 134/320 (41%), Gaps = 30/320 (9%) Query: 7 TLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 S ++ G + A + +IG+ + ++ F +++ E+ +K +LL+ D Sbjct: 12 CASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKEL-GYELLVLD 70 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 SQND +K+ I+ L+ G+ L +N D A ++ A N+PV+ +++ + Sbjct: 71 SQNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQANGG--- 127 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 + ++ +D+ + G + I + I+ V L+G PG R Sbjct: 128 --EVVSHIASDNIKGGELASSFIIDELKNKKD--------IKVVELQGIPGASATRERGK 177 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + DK + + A +D AQ M+ + + + V A+ND MA+GA + Sbjct: 178 GFHN-IIDKKSNLKLISSQAANFDRAQGLSVMENIIQAQS--DFDAVFAHNDEMALGAAK 234 Query: 244 ALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 ALK NK I V G D +A ++ ++ TV + + A +++G+ Sbjct: 235 ALKTANKK-IIVVGFDGDEDAKTAIEKSEISATVAQQPALMGSTSIETAVKISNGQNI-- 291 Query: 304 GTNWKIDNKVVRVPYVGVDK 323 +K + V + K Sbjct: 292 -------SKNIPVKLRLITK 304 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 47/351 (13%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K L+ +++++L G+A + +G+++ + F + Sbjct: 1 MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 K ++ +L+ ++ D +KQ I+ L+ K V L +N +D A ++KA+ Sbjct: 61 KGVKDKTSE-IGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAK 119 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQI 164 N+P++F ++ + + + ++ TD+ + G +LI K Sbjct: 120 EANIPIIFLDRGANSEDM-----TTFLETDNVKMGEQAAELILKALKDKGL------NGG 168 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 V ++G G A R + DK + + + ++ ++ + M L Sbjct: 169 NVVEIEGLQGTSAARDRGKGFHNVM-DKHKEVKIVAKQAGDFNQEKSMNVMQNILQA--N 225 Query: 225 NKIEVVIANNDAMAMGAVEALKAHN-------KSSIPVFGVDALPEALALVKSGALAGTV 277 KI+ V +ND +GA +A+ A N K I V G+D + +A+ VK G + ++ Sbjct: 226 PKIDAVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKKGNIDVSI 285 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 D ++ G+ K + + + KDN + Sbjct: 286 SQDPIGMGVQAVEVGLKAIKGEQV---------EKHIYTKFFPITKDNATD 327 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 89/338 (26%), Positives = 143/338 (42%), Gaps = 35/338 (10%) Query: 1 MNKKVLTLSAVMASMLFGAA------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M + + + + A++L G + + IG T+ + F+ V A+E AK Sbjct: 1 MKRNAIFATLIAAALLAGCNQSSDNESGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEM 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 V+L+ D++ KQ +Q++ + +GV A+ +N + A+ I+ A +P++ N Sbjct: 61 -GVELITVDAERSALKQVEQVESFIGQGVDAIIMNPAEVEASSPAIKLAMDAKIPIINVN 119 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 E S K +VG+D ES I IA+ G+ +++ G G Sbjct: 120 SETSAKP------TAFVGSDDTESARIAMKYIAEKLG----------GKGNILMMHGFMG 163 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 R L + L + WD A+ + W+ +KI + A N Sbjct: 164 QAAQIKRDNGAKDILK-ANPGLKLLAEQSGEWDRAKGMSLTENWIQSY-GDKINAIFAQN 221 Query: 235 DAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 D M MGAV+AL+A K + V VDA+P+AL VK G L TV +A Q + A Sbjct: 222 DEMGMGAVKALEAAGLKGKVLVVSVDAIPDALQAVKKGTLDATVFQNAKEQGGKAIETAV 281 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A + K V +P+ VDK N+ F K Sbjct: 282 KAAKKEAF---------EKEVLIPFQLVDKGNVEGFLK 310 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 84/329 (25%), Positives = 149/329 (45%), Gaps = 27/329 (8%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMN 62 + + L G+ A A D R+GV++ ++D+ +++ + +A+++ A+ P V L + Sbjct: 12 RTRAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVE 69 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DS +D +Q Q++ +A+ V A+ +N D AA G + E+A +P+V+ N P + Sbjct: 70 DSGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVREF 129 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 +VGTD + G +Q + +A+ G+ +L G H D RT Sbjct: 130 --PAGVVFVGTDERRLGQMQMEYLAEKMG----------GKGDLAILLGRLAHDDTRKRT 177 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 V L + + ++ + W + D + WLS + + V+ANND M +GA Sbjct: 178 AGVKDVLA-RYPQIRVVEEQSGDWQRDKGLDLTNNWLSS--GREFDAVVANNDEMGIGAA 234 Query: 243 EALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+ + + V G+D P+ LA + G LA T+L D + D+A L Sbjct: 235 MALRQAGRREVSVGGIDGTPDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQ 294 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 V +P + DN +F + Sbjct: 295 ---------GDVWIPVHLITPDNHTQFQR 314 >UniRef50_C1I2X7 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2X7_9CLOT Length = 348 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 143/340 (42%), Positives = 204/340 (60%), Gaps = 25/340 (7%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K L+ MA+++ A+ + ++GV +YK+DD ++S VR Sbjct: 1 MKKVKKLLTMTMATVMVTASLVGCGGNSGGSNGGDTSKGDKVKVGVCLYKFDDTYISTVR 60 Query: 45 KAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 +++E+ PD V+ D + DQ+ QND ID LL K V L +NLVD AA TVI+K Sbjct: 61 QSLEKIQSENPDKVEFTFYDGKGDQATQNDSIDTLLQKDVDLLLVNLVDTGAAPTVIDKI 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDG 162 + PVV FN+EPS ++ +YDKA +VGT++KE+G++QG++++K W D N DG Sbjct: 121 KTAEKPVVLFNREPSADSIKAYDKAIFVGTNAKEAGVMQGEILSKVWEKDKAAIDKNGDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+V+LKGEP +P+A ART Y + LNDKG+KTE+L L WD A A++ +AW Sbjct: 181 VLQYVMLKGEPDNPEAVARTQYSVSTLNDKGVKTEELALQVCNWDQALAQNATEAWF-SK 239 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGT 276 +KIE VIANND MA GA+ AL+A ++ IPV GVDA A L+ G + G+ Sbjct: 240 FGDKIEAVIANNDGMAQGAIAALQAQGYNNGDAAKTIPVVGVDATAAAQDLIGKGFMLGS 299 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 VL DA AKA ++ NLA GK A +GT++K D+ V V Sbjct: 300 VLQDAEGMAKALYETGMNLAGGKSAVEGTSYKFDDTGVAV 339 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 146/346 (42%), Gaps = 42/346 (12%) Query: 1 MN-KKVL--TLSAVMASMLFGAAAHAAD----------TRIGVTIYKYDDNFMSVVRKAI 47 M K++L L+ M S +FG ++AD + V + + ++ V+ Sbjct: 1 MKGKRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGA 60 Query: 48 EQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 AK VQ+L +++ D Q I+ + KGV AL + + P AA T +KA + Sbjct: 61 NDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKE 120 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV + + K +VGT + +G + G+ I+K Sbjct: 121 KIPVVLIDT-----DANWDKKKSFVGTGNIAAGKLGGEYISKKLKKGDEA---------- 165 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 ++++G PG + RT K L G + +++ A + +A M+ L Sbjct: 166 IIIRGVPGDRTQDERTQGAQKALEAAG--IKVVEIQPANSEREKAISVMENLLQTH--PN 221 Query: 227 IEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 I+ V ND MA+GAV+AL+ K +I GVD P+AL +K G L GTV ++ + K Sbjct: 222 IKGVFCTNDEMALGAVKALQQAGKKNIISIGVDGSPDALKSIKEGGLTGTVAQNSYDIGK 281 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + A + G+ + VDK N+ E K Sbjct: 282 KGVETAVKVLRGEKV---------ETRIDTGTTLVDKQNVNEQEAK 318 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 131/346 (37%), Gaps = 49/346 (14%) Query: 2 NKKVLTLSAVMASMLFGAA-------------------AHAADTRIGVTIYKYDDNFMSV 42 ++ + S L + + IGV+I ++ + Sbjct: 6 KLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNNPYFVS 65 Query: 43 VRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 102 + AI+ AK + +L ++D+QND + Q + + +++ V A+ IN VD A I+ Sbjct: 66 MNNAIKSMAKEK-NTKLTVSDAQNDSATQLNNVQNFISQNVDAILINPVDSDAIVPAIKA 124 Query: 103 ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDG 162 A ++PV+ ++ + V +D+ +G + + K N Sbjct: 125 ANNAHIPVIAMDRGSNGGT-----VLTTVASDNVAAGKMAAQAVEKLVGKN--------- 170 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 ++ + L G PG R E G+ L +A +D + L Sbjct: 171 -VKVLELSGTPGASATIDRGKGFNSEAKTLGLNI--LSSQSANFDRTTGLNTTQNMLQSH 227 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDAN 282 ++ + A ND MA+GA +A++A + I +FG+D E +K+G + T+ Sbjct: 228 --KDVQAIFAQNDEMALGAAKAVQATGQK-IAIFGIDGESETHDAIKAGTMTATIAQQPA 284 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 + + GK A ++ P VDKDN+ + Sbjct: 285 KIGEMALQATYDYYQGKKIAH---------MINSPIYLVDKDNVDQ 321 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 30/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K ++ + A++L AAHA IG ++ +DD F +++R +E AK V L Sbjct: 1 MKKFII---GIAAAVLVSTAAHAE--TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D+ ND +KQ QI +A GV A+ + VD A + + A +P+V+ N+EP Sbjct: 56 IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +K +V ++ +SG +Q I K DG+ + V++ GE + A Sbjct: 116 DT-LPEKQAFVASNEVDSGTLQTREICKLL----------DGKGKAVVIMGELSNQAARM 164 Query: 181 RTTYVIKELN-DKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT + L D+ E +Q TA W Q D M WLS + + VIANND MA+ Sbjct: 165 RTKDIHDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAI 222 Query: 240 GAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++ALKA + S+ + G+DA +ALA + +G L +V DA Q K + D A L+ Sbjct: 223 GAIQALKAAGRSMDSVVIGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSK 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ + + +P+ V K NLAEF K Sbjct: 283 GEAV---------ERKIYIPFELVTKANLAEFQGK 308 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 90/335 (26%), Positives = 159/335 (47%), Gaps = 25/335 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + L A + ++ F +A A IGV++ +DDNF++V+R A+ ++ P+V + Sbjct: 1 MKR---ILLAAVMAINFSCSAGAES--IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQ 55 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 M D+QND ++Q Q+ +A GV A+ +N VD A + + A VP+V+ N++P+ Sbjct: 56 MEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANV 115 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + ++ +D SG +Q + + A K V++ G+ + + Sbjct: 116 D-RLPETQAFIASDEAVSGTLQAQEVCRLLKARG-----KGKSANVVVMMGQLSNQASRQ 169 Query: 181 RTTYVIKELNDKGIK-TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT V + + ++ TA W +A + M WLS + + VIAN D MA+ Sbjct: 170 RTKDVHDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAI 227 Query: 240 GAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GA++A+++ V G+D + + L++ G L TV DA Q D A LA Sbjct: 228 GAIQAMRSAGLPVKDYIVAGIDGGRDGIELMRQGYLDVTVFQDAAGQGAGALDTALMLAR 287 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 GK ++ + VP+ + N+A+F + Sbjct: 288 GKK---------TDRTIWVPFQLITPTNVADFVGR 313 >UniRef50_C7G6I7 D-galactose-binding periplasmic protein n=3 Tax=Clostridiales RepID=C7G6I7_9FIRM Length = 367 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 178/333 (53%), Gaps = 15/333 (4%) Query: 10 AVMASMLFGAAA----HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-----VQLL 60 ++ S++ G +IG+++Y D F+S + K A + + + Sbjct: 33 ILVMSVVIGGCGGREDAKKSIKIGISVYDQYDTFVSEMMKDFNDYATKKEEETGVAINID 92 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 ++ QS QN Q++ ++ +G + +NLVD +I+ A N+PV+FFN+E + Sbjct: 93 TYNASASQSTQNSQVENMITEGCDVICVNLVDRTDPTAIIDLAEKNNIPVIFFNRELVEE 152 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 L+ + + YYVG + ESGI+QG+L A+ + +Q D N DG Q+V+L+GE GH DA Sbjct: 153 DLERWTRLYYVGAQAFESGIMQGELAAEAFLTDQSLDKNGDGIFQYVVLEGEAGHQDAIV 212 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT Y + + D G++ E+L A W+ AQA+ KM + + IE+VIANND MA+G Sbjct: 213 RTEYSVSTMIDSGVEVEKLGYAIANWNRAQAQTKMAQLM-SQFGDSIELVIANNDDMALG 271 Query: 241 AVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A++ALKA + V G+D L VK+ + GTV ND QA A +LA L+ Sbjct: 272 AIDALKASGLTKDEWPAVIGIDGTDVGLEAVKNKEMIGTVYNDKEGQADAMLNLAYELST 331 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G +D ID K +R+PY V D++ + Sbjct: 332 GSDLSDLN--LIDGKYIRLPYARVTCDDVDSYM 362 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 124/318 (38%), Gaps = 31/318 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 + IG++ + + + + I + A+ P + D+ D SKQ ++ Sbjct: 41 ACKGPDSKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVEN 100 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + K V L I+ + A V++KA + +PVV +++ +A Y+G D+ + Sbjct: 101 FMTKKVDLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGEA-----FTTYIGADNVQ 155 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 G G+ + V LKG G A R ++ + G K E Sbjct: 156 IGRQAGEYFKNTLLPQG---------GKIVQLKGLSGSTPAAEREKGFMEGI--AGSKIE 204 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFG 257 + W+ + + KMDA L I+ V A ND MA GA A +A + + G Sbjct: 205 VVDTADGEWERSVGQQKMDALLKAH--PDIQAVYAQNDPMAEGAWLAAQAAGRKDLKFVG 262 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +D LP + V+ G L+ T L + + A+ L + + K Sbjct: 263 IDGLPIESGGIKAVEQGRLSATNLYPTG--GEEAVEAARKLL--------IDCQPVPKEQ 312 Query: 315 RVPYVGVDKDNLAEFSKK 332 +P V ++N A+ + Sbjct: 313 TLPTELVTRENAAQVYTR 330 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 27/313 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A+ IG T+Y F++++ + +E+ A+ L+M D+Q D Q QI+ L Sbjct: 38 ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEEL-GCDLVMLDAQQDAQNQITQIENL 95 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 +A+ V + + VD A IE +P+V N ++ + +YVG D + Sbjct: 96 IAQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNML-----FNTEEPYHYVGPDDVLA 150 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G ++ G+ V+L+G G R L+ K Sbjct: 151 GELEMQNAIDEIG----------GEGNVVILEGPIGQSAQIQRLEGNQNILDKYEGKINV 200 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFG 257 L TA W +A ++ WL + KI+ ++A+ND MA+GA++AL+A + I V G Sbjct: 201 LADQTANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLTDKIVVTG 259 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VDA+ + VK G L GTV DA + A ++ +GK + + Sbjct: 260 VDAILDGCNAVKDGTLLGTVYQDAGLEGSEAVQKAYDVLEGKVTEKELS--------YID 311 Query: 318 YVGVDKDNLAEFS 330 + KDN+ E Sbjct: 312 MKWITKDNVDELL 324 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 22/302 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +SA + S A A D + + + ++ F ++ E AK L+ Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKEL-GYNLI 60 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQND SK+ ++ L +GVKA+ IN D A I A +PV+ ++ SR Sbjct: 61 VLDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDRGASRG 120 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + ++ +D+ G + G I ++ + + L+G G A Sbjct: 121 -----EVVSHIASDNVVGGEMAGHFIEAKIGSD----------AKVIQLEGIAGTSAARE 165 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + + G K + L A +D + + M+ L+ ++ V A ND MA+G Sbjct: 166 RGEGFMNAVK--GSKMQLLASQPADFDRTKGLNVMENLLAA--NPDVQAVFAQNDEMALG 221 Query: 241 AVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A+ A++A KS + + G D + +A V+ G LA TV + + A + G+ Sbjct: 222 ALRAIQASGKS-VMIVGFDGTDDGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280 Query: 301 AA 302 Sbjct: 281 VE 282 >UniRef50_C5RJT8 Putative galactoside ABC transporter n=1 Tax=Clostridium cellulovorans 743B RepID=C5RJT8_CLOCL Length = 353 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 147/307 (47%), Positives = 196/307 (63%), Gaps = 8/307 (2%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +IG IYKYDD F+S V +++E+ + L + DSQNDQS+Q QID ++ V+ Sbjct: 42 PKIGAVIYKYDDTFISYVSESMEET--SFGKAALNVQDSQNDQSRQFQQIDEMIDDKVRV 99 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 L +NLV+P AA T+I KA+ VPV+FFNKEP L SY A+YVG DS E+GI+QG + Sbjct: 100 LVVNLVEPTAAETIINKAKNAEVPVIFFNKEPEASVLKSYSNAWYVGADSSEAGILQGKM 159 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 IAK W N WD +KDG + +VLLKGEPGHPDAE R YVI E+ + GI+ +L AM Sbjct: 160 IAKLWRKNLQWDKDKDGILSYVLLKGEPGHPDAEIRAKYVIDEIKNSGIQVRELDSHYAM 219 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK----SSIPVFGVDAL 261 WD +A+ KMD W+ N IE VI+NND MA+GA+ +L+ + + +PV GVDA+ Sbjct: 220 WDEVRARGKMDQWI-AQFGNNIEFVISNNDTMAIGAINSLEKNGYMSGDNFVPVVGVDAI 278 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI-DNKVVRVPYVG 320 EA+ + G + GTVLNDA Q A +LA N + G GT + + +K VRVPYV Sbjct: 279 QEAIQEITEGKMVGTVLNDAKKQGAAVINLAINASKGDDILKGTAFVMGSDKSVRVPYVA 338 Query: 321 VDKDNLA 327 + KDNL Sbjct: 339 ITKDNLD 345 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 78/313 (24%), Positives = 143/313 (45%), Gaps = 29/313 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 A A + IG T+ + FM++++ A+E K +V+L++ND+++ KQ Q+D +A Sbjct: 41 AAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLDSFVA 100 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +GV A+ I+ VD A + ++ +PV+ + +VG+ ++ G Sbjct: 101 QGVDAVIISPVDADALASAVKTVVDAGIPVITC-----SADVTGDQGQVWVGSSNENGGE 155 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 I+ +A+ G+ + +L+G G + R L D E + Sbjct: 156 IEMKYVAEKLG----------GKGKIAVLRGPLGAFAEQGRFAGYETVLKD-YPDIEIVF 204 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVD 259 T W +A ++ L+ +++ ++ ND MA+GA+EA+KA K I + G+D Sbjct: 205 DQTGNWQREEAMALIENLLTA--GTELDAIVCQNDGMALGALEAVKAAGKKDQITITGID 262 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 A+ +AL +K+G L T DA Q D+A A G+ + +P+ Sbjct: 263 AIVDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVER----------MDIPFE 312 Query: 320 GVDKDNLAEFSKK 332 V KDN+ + + Sbjct: 313 LVTKDNVDGYYDR 325 >UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C5EU51_9FIRM Length = 350 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 113/344 (32%), Positives = 181/344 (52%), Gaps = 22/344 (6%) Query: 1 MNKKVLTLSAV--MASMLFGA----------AAHAADTRIGVTIYKYDDNFMSVVRKAIE 48 M + + L AV +L G RIGV +Y+ DD F+ +R +E Sbjct: 1 MKRNWIYLLAVCLGIGILIGFWQYRENEGQRQTKKNSIRIGVLLYRGDDTFIGTLRAGLE 60 Query: 49 QDAKAAP-----DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 AK V+L + DS+ Q+ QN Q++ L++ G AL IN VD ++A +I+KA Sbjct: 61 DKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVERLISLGCDALCINSVDRSSASIIIDKA 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDG 162 PVVFFN+EP + ++ ++K YYVG D+KES ++QGD + + ++ D N +G Sbjct: 121 MDAGTPVVFFNREPVEEDMNRWEKLYYVGADAKESAVLQGDALVDAYRKDSRTLDANGNG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 + +VLL+GE H D+ RT + I+ L D G+ E++ A WD +QA M+ WL Sbjct: 181 LVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVPLEKITGGIANWDRSQASALMEQWLKEY 240 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLND 280 +IE+V++NND MA+GA++A+ SI V G+D P + ++ G L TV +D Sbjct: 241 PG-QIELVVSNNDDMALGAIDAMNRAGIGANSIKVVGIDGTPVGIKALEEGTLFATVESD 299 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 A+A FD+A +L+ + ++ K P + ++ Sbjct: 300 KERYAQAIFDIAWSLSLDQD-PKSVVPLVNGKYYWCPQRVLTQE 342 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 151/330 (45%), Gaps = 29/330 (8%) Query: 5 VLTLSAVMASMLFGAAAHAADTR-IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 VL ++ +MA + G ++ IGV I +DD F+ ++ ++ A +++L+ D Sbjct: 51 VLFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVD 110 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 ++ D KQ QI + + V + + V+ A + + + +V+ N+ P+ Sbjct: 111 AKEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLP-- 168 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 D YVG++ G Q A H ++ G A RT Sbjct: 169 --DGVAYVGSEELRFGEEQAKYAASH-----------SDGGNIGIIMGMMTVEAAILRTQ 215 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 V +K + ++ TA+W +Q M+ W++ +K++++I+NND MA+GA++ Sbjct: 216 GVEDFFKEK-PEYNIIRKQTALWQRSQGMVVMENWINS--GDKLDIIISNNDDMALGAIQ 272 Query: 244 ALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+A K V GVDA P+ L +K+GAL TV D +QA+ D A Sbjct: 273 ALRAAGKLDDTIVIGVDATPDGLMAIKNGALDATVFQDGRSQARGAIDAAL--------- 323 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G N +K+ +P V KDNLAEF K Sbjct: 324 SGINKTPRDKITWIPAELVTKDNLAEFEAK 353 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 246 bits (630), Expect = 6e-64, Method: Composition-based stats. Identities = 89/357 (24%), Positives = 148/357 (41%), Gaps = 54/357 (15%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA-------------------------ADTRIGVTIYKY 35 M + V L A + + F A + +G+T+Y Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63 Query: 36 DDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 95 + F + A ++ A V+L + D D + Q +Q++ +++ GV A+ +N D A Sbjct: 64 KNEFTVRLSNAAKKKAAEL-GVELKIYDGNYDPNTQINQVETMISDGVDAIILNPQDAKA 122 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 ++KA N+PV+ N + L YVG+ +G ++ IA Sbjct: 123 CAVAVDKAAAANIPVIGVNTRVDSEKL-----TSYVGSKDVYAGELEMQAIADKIG---- 173 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKM 215 G+ V+L G G R+ + L K + L TA W ++A M Sbjct: 174 ------GKGNIVILDGPLGQSAQLERSEGIQNVLK-KYPDIKVLAEKTANWSRSEAMTVM 226 Query: 216 DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAG 275 + WL +KI+ V+A ND MA+GA +A++A IP GVD + +AL V+ G L Sbjct: 227 ENWLQAF--DKIDAVVAENDEMALGARKAIEAKKL-DIPTIGVDGITDALDAVEKGTLIA 283 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 T+ D Q ++A A G+ +K + + V KDN+AEF ++ Sbjct: 284 TIFQDGAGQGSKALEIAVAKAKGENV---------DKEYWIDFEPVTKDNVAEFKQR 331 >UniRef50_C4ZBY5 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C4ZBY5_EUBR3 Length = 338 Score = 246 bits (629), Expect = 7e-64, Method: Composition-based stats. Identities = 115/338 (34%), Positives = 174/338 (51%), Gaps = 14/338 (4%) Query: 5 VLTLSAVMASMLFGAAA----HAADTRIGVTIYKYDDNFMSVVRKAIEQDAK----AAPD 56 ++ L + + IGVT Y D F+ + + +++ D Sbjct: 1 MMILCFALILSFVSCSNTRVDEKKQIYIGVTCYDQKDTFIGELIETFKKECASLDTDKYD 60 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + + + D+ Q Q+DQ+ ++ G L INL D +I A +++P++FFN+E Sbjct: 61 ISMTIMDAAGSQRAQDDQVQEMIEDGCNVLCINLADRTDLSHIINAAMEKDIPIIFFNRE 120 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 P + L+ +DK YYVG +K+SG +QG+LIA + N G D N DG+IQ+V+L+GE GH Sbjct: 121 PVDEDLNRWDKLYYVGAKAKQSGQMQGELIADYIKNNPGVDKNGDGRIQYVILEGEMGHQ 180 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 DA RT V + + + G++ E+L A W+ AQA+++M + IE+VIANNDA Sbjct: 181 DAIVRTESVTESMKNNGLQIEKLSCQIANWNRAQAQNRMTQLIGQYKN-SIELVIANNDA 239 Query: 237 MAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 MA+GA++A + + FGVD + L V+ LA TV ND QA A LA Sbjct: 240 MALGAIDAYEKLGVTESNVPAFFGVDGTDDGLEAVQQSKLAATVYNDKEGQAMAMAQLAY 299 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 A G + D K V +PY V DN+ EF K Sbjct: 300 LAATGGSMKNIKFE--DKKYVYLPYEKVTPDNVNEFVK 335 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 246 bits (629), Expect = 8e-64, Method: Composition-based stats. Identities = 65/307 (21%), Positives = 133/307 (43%), Gaps = 19/307 (6%) Query: 1 MNKKVLTLSAVMASMLFG--AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 +NKK+ ++ ++ ++ +IG+ + ++ F ++ E++A+ Sbjct: 3 INKKIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKL-GYD 61 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L++ DSQND +K+ ++ L+ GV AL IN D A +E A N+PV+ +++ + Sbjct: 62 LVVLDSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQAN 121 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 + ++ +D+ + G + + + + G I V ++G PG Sbjct: 122 GGKI-----TSHIASDNIKGGEMAAEYVLDKFKDE-------KGPINVVEIQGIPGASAT 169 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + DK K + + A +D + M+ + I+VV A+ND MA Sbjct: 170 RDRGEGFHN-IMDKNDKFNFISIQAADFDRQKGLQVMENIIQA--NPNIQVVFAHNDEMA 226 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 +GAV+A+KA ++ V G D +A + + + + + +LA + G Sbjct: 227 LGAVKAIKASGINA-LVIGFDGNDDAKDSIDANEMTAIIAQQPDLIGALGVELANKIYKG 285 Query: 299 KGAADGT 305 + + Sbjct: 286 ESIKNKI 292 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 30/333 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 ++K L + +A++ G+A A +G D F+ + A + +K+ P V++ Sbjct: 4 ISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVN 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +D+ ND SKQ DQID +A+ V A+ + VD +EKA +PV+ Sbjct: 64 FSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIAL------G 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + K +VG+ + ++G +QG+ + +H + + L+G PG + Sbjct: 118 IQSAGGKYTFVGSKNIDAGRLQGEYMKEHLPKG----------AKILYLEGTPGLSHTQE 167 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R L L +A +D A+ + W+ K + ++A ND MA+G Sbjct: 168 RKKGFEDALGRS--DVTTLASLSANYDRAEGMKVTEDWIQSF--PKFDAIVAANDQMALG 223 Query: 241 AVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A+EAL+ ++ + + GVD +AL +K+G ++ T+ DA QAKA F++ + L G+ Sbjct: 224 ALEALQGADRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGE 283 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A VP+ + KDN+ +++KK Sbjct: 284 DAPAEK---------LVPFASITKDNVGQYAKK 307 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 77/330 (23%), Positives = 125/330 (37%), Gaps = 34/330 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M L A RIGV DD++ + I ++A V + Sbjct: 5 MKYMKWITVLFCLLGLAACRQDAPRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVE 63 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + +D KQ + + + KGV L I+ + A ++E+A + +PV+ +++ Sbjct: 64 IRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL-- 121 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 S Y+G D+ E G G+ IA G+ V L G G A Sbjct: 122 ---SDKYTAYIGADNYEIGRAVGNYIASSLK----------GKGNVVELTGLGGSTPAME 168 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + ++ + + A W+ A+ +MD+ L KI+ V A+ND +A G Sbjct: 169 RHQGFMAAIS-NYPDIKLIDKADAAWEREPAEVEMDSMLRRH--PKIDAVYAHNDRIAPG 225 Query: 241 AVEALKAHNK-SSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A +A K + + G+DALP L LV L T + N LA N+ Sbjct: 226 AYQAAKKAGREKEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNIL 283 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + K T + VD+ N Sbjct: 284 EKKSYPRET---------VMNTAVVDRTNA 304 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 72/310 (23%), Positives = 124/310 (40%), Gaps = 25/310 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQN--DQSKQNDQ 74 G AA +G+ + + F + E A+ D +LL QN D Q + Sbjct: 55 VGMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINA 114 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK-AYYVGT 133 ++ + +GV A+ + D A + +A + V+ F+ A++ +VG Sbjct: 115 VENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGP 174 Query: 134 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG 193 D++ + G+ + + + V+++G PG +A R + G Sbjct: 175 DNRMGAEMAGNALGEALGEG----------GRVVIIEGNPGADNATQRRLGFEDAIATHG 224 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI 253 E L+ TA W+T +A A L+ ++ V+A ND+MA+G +EAL A + I Sbjct: 225 --LELLESRTAHWETEEANQVFAAMLTAH--PDLQGVMAANDSMAIGVIEALDAAGRDDI 280 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 V G DA+P L +++ G + TV A DLA + + Sbjct: 281 LVVGFDAVPAVLPMIEDGRMLATVDQFGQAMAANAIDLALEVLE--------TGVDLEGW 332 Query: 314 VRVPYVGVDK 323 VR P V Sbjct: 333 VRTPIELVTA 342 >UniRef50_C1Q8B1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1Q8B1_9SPIR Length = 344 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 139/340 (40%), Positives = 206/340 (60%), Gaps = 18/340 (5%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR--IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K+VL L ++AS + + + IG+TIY+ DD F + ++ IE+ + Sbjct: 1 MEKRVLLLLIILASFIVISCSDKKTNNNFIGITIYRTDDPFANSLKNNIEKFIS--GRAK 58 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 ++NDSQN+Q+ QN QID ++KG K L INLVD AA +++KA+ + P++ FNK P Sbjct: 59 YIVNDSQNNQTTQNSQIDNYISKGAKVLVINLVDTQAAQDIVDKAKNSDTPIILFNKSPD 118 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++SYDK +YVGT S+E+ IQG +IA W AN WD N DG+IQ V+L+GEPGH D Sbjct: 119 PSVMNSYDKVWYVGTLSEEAVNIQGKIIADSWKANPSWDKNGDGKIQCVILEGEPGHADT 178 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN-----KIEVVIAN 233 + RT +I + + GI+ E L TAMW+ +AK+ +D W+S N N KIE + +N Sbjct: 179 KIRTENLISFIENSGIELEILDKKTAMWNRDRAKNIVDFWMSNHNDNEDSDTKIEYIFSN 238 Query: 234 NDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 ND MA+GA+++++ + IP+ G+DA+ E + +++G + GTVLND+ QAKA Sbjct: 239 NDEMALGALKSVQGFGYNKGESNKFIPIVGIDAINETIKEIENGNIVGTVLNDSLTQAKA 298 Query: 288 TFDLAKNLADGKG--AADGTNWKIDN-KVVRVPYVGVDKD 324 DLA NL + GT W +DN K VRV Y + + Sbjct: 299 ISDLAVNLFKNETLNPILGTIWTLDNTKSVRVHYKPITIE 338 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 119/358 (33%), Gaps = 52/358 (14%) Query: 1 MNKKVLTLSAVMASMLFG-----------------------AAAHAADTRIGVTIYKYDD 37 M + + L+ ++ + A+ I + D Sbjct: 1 MKRSSIFLTILVLVLAISLVFSGCSSKQQTPSSSSTQESSQTASSEKKYNIVLITMDSMD 60 Query: 38 NFMSVVRKAIEQDAKAAPDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAA 95 V+ E AK +VQL + D ++Q ++ + + A+ I D A Sbjct: 61 EHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMEDAINQKADAILIAPTDQTA 120 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 V+EKA +PV+ + + + +V TD+ ++ + D + + Sbjct: 121 LTPVVEKAFDAGIPVILID-----SPVKTDKYVSFVATDNIKAAEMAADKLGELLG---- 171 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKM 215 G+ + ++ +PG R L +K + + +M D +A ++ Sbjct: 172 ------GKGKIAIISAQPGSGTTIMRENGFKDRLKEKYPDIQIITTQYSMGDKNRALNQA 225 Query: 216 DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALA 274 L+ + N+ +G A+K + + V G D + +K + Sbjct: 226 LDILTAH--PDLAGFYGTNEGSTIGIAMAIKQKDLAGKVKVVGFDISQATINAIKENYIQ 283 Query: 275 GTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 +++ + ++A + GK K V + KDN+ E K+ Sbjct: 284 ASMVQNPYMMGYKGVEIAVDKLQGKEVP---------KRVDTGVTVMTKDNVDEVVKE 332 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 126/330 (38%), Gaps = 34/330 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +L L + +L + IGV+ DD + + I ++A V++ Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + ++++ Q + I+ + + V L + + AA V+EKA G +PVV +++ Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKIL-- 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 S +VG D+ E G G I G+ + + + G G A Sbjct: 118 ---SDRYTAFVGADNCEIGKDVGQYIVNRLG----------GKGKILEITGLEGSTPAME 164 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + L + E W + A +KMD+ L + I +V A ND MA+G Sbjct: 165 RHRGLADALKAE-PGIEITASVDGAWLQSVAGEKMDSILQ--DNKGINLVFAQNDRMAVG 221 Query: 241 A-VEALKAHNKSSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A + A + + + G+DALP + V G L T + +A ++ Sbjct: 222 AYLSARQRQLEKEMLFVGIDALPGKGYGVEQVLEGVLDATFIYPTG--GDKVMQVAMDIL 279 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + + T VDK N Sbjct: 280 EKRPYERDTKLS---------TALVDKTNA 300 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 243 bits (621), Expect = 7e-63, Method: Composition-based stats. Identities = 89/336 (26%), Positives = 166/336 (49%), Gaps = 35/336 (10%) Query: 1 MN--KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M K+++ ++A+ S A IGV++ +D NF++++R +I+++AKA + Sbjct: 1 MKYLKRIVLVAALGCSTSVLA------ETIGVSMAYFDQNFLTIIRHSIDKEAKAR-GIS 53 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 + D++ D +Q DQ+ ++ GV A+ ++ V+ A + + +P+V+ N+ P Sbjct: 54 VQFEDARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPG 113 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 L +VG+D K+SG +Q + +A+ + Q ++ G A Sbjct: 114 DSKL--PAGVVFVGSDEKQSGTLQMEELARL----------ANYQGNVAVMIGNLTDAGA 161 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 RT V + + K K + +Q +A + ++ D M W++ N I++V ANND MA Sbjct: 162 LQRTKDVEQVVA-KYPKMKVVQKQSANYSRSEGMDLMLNWIT--NGESIDIVAANNDEMA 218 Query: 239 MGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 +GA+ AL+ K S + V G+DA P+ L + SG + TV DA Q KA+ D+A+ + Sbjct: 219 IGAIMALQQAGKQGSKVLVGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMI 278 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ + +P+ V N+ +++ K Sbjct: 279 KGEKL---------DPYYWIPFELVTPANMQKYAAK 305 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 81/341 (23%), Positives = 142/341 (41%), Gaps = 39/341 (11%) Query: 1 MNKK----VLTLSAVMASMLFGA-------AAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K+ +L + VM+++L G + IG + D F + Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTF-VKAIADAAE 59 Query: 50 DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 DA V L+M D++ D +KQ + + L+A+ V AL + D + V+ A ++P Sbjct: 60 DAAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIP 119 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 ++ N + + +VG +ESG I G N + Q ++ Sbjct: 120 IIICN-----GDIADKNYTAFVGCTDQESGEILGTWFND----------NVEHGSQICII 164 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +G G R + E L TA W +A + WL+ +K++ Sbjct: 165 EGPMGQSGQVGRYAGFEEV--GMLDNFEVLSCQTANWKRDEAMALAEDWLTTY-GDKLKA 221 Query: 230 VIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATF 289 ++ ND MAMGA+ A KA ++ + + GVD L +A+ VK G L +VL D+ Q + Sbjct: 222 IVCENDDMAMGALSACKAAGRTDVVIGGVDGLEDAIQAVKDGELGVSVLQDSAGQGEGAV 281 Query: 290 DLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++A + +G+ T R+P+ + DN+ + Sbjct: 282 EVALQIINGEDYQKDT---------RIPFHAITSDNVDAYL 313 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 67/332 (20%), Positives = 135/332 (40%), Gaps = 24/332 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYD-DNFMSVVRKAIEQDAKAAPDVQL 59 M KK L ++ + S+ F + A D IGVT D++ + A++ P+V+ Sbjct: 1 MQKK-LAITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ D+ + ++Q Q+ L+ + V A+ + + A ++ KA+ +PV+ N S Sbjct: 60 IVLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNISE 119 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 K + G ++ G +L+ + +G+ Q V + G+PG+ A Sbjct: 120 KG--QEFITAFSGPNTITQGQYAAELMCEGL----------NGKGQVVQITGQPGYQTAI 167 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R L + W+ +++ M+ +++ KI+ V A +D M + Sbjct: 168 NRQKGFEDSLAADCPGVSIIDSQPGDWNREKSQRVMENFITR-FGTKIDGVYAADDNMGI 226 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GA+ A+K + +I + G +K G+ G+V+ + A A + + +G Sbjct: 227 GALNAIKEADLKNIKIVGATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILNGD 286 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + V N+ EF + Sbjct: 287 KVEKDNYF---------DTPKVTLANIDEFER 309 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 187/344 (54%), Gaps = 34/344 (9%) Query: 1 MNKK-VLTLSAVMASMLFGAAAHA----------ADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K L L +++A LFG ++ IGV IYK+DDNFM++ R+ + Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 50 DAKA-----APDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 K +L + D + DQ+ Q +QI+ +A+G + N+VDP AAG++I A+ Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 105 GQNVPVVFFNKEPSRKALDSY-DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ 163 + +PVVF N+EP + L+ + K YVG D+ +SG IQG +IA D++ DG Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQGYMIANL---ENKGDIDGDGS 177 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT-AMWDTAQAKDKMDAWLSGP 222 + ++ L G+P + DA+ RT Y +K L +KG+KT L A WDTA+ ++ L Sbjct: 178 VSYITLMGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANAL-EQ 236 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGALAGTVLN 279 NK+EVV ANND MA+GAV A++A + I V GVDA+P+A+ L+K G L GTVLN Sbjct: 237 FGNKLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLKGGKLTGTVLN 296 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 D NQ+ D+A L GK + YVGV K Sbjct: 297 DHFNQSHTAVDVALELLQGKDVSA---------YYWHDYVGVTK 331 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 69/355 (19%), Positives = 128/355 (36%), Gaps = 57/355 (16%) Query: 1 MNKKVLTLSAV----MASMLFGAAAHA------------------------ADTRIGVTI 32 M K + L+A+ M + LFG ++ +G + Sbjct: 7 MKKANMLLAALCAVGMTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSN 66 Query: 33 YKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 92 + F + K +++ A A V+L+ D D + Q Q++ + +GV + + +D Sbjct: 67 WSRSFEFYVDLEKGMQEVADAQ-GVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPID 125 Query: 93 PAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA 152 AA T E +P+V + + D A ++ +D+ G + I + Sbjct: 126 SNAAVTEAETINQAGIPLVTTDIAVAGG-----DVASHIASDNTLGGQLAAQFIGEQLG- 179 Query: 153 NQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAK 212 G + L+ P R T + K E + + + + Sbjct: 180 ---------GTGKVALIN-NPTITSLIERETGFTDTMAQKYPDIEIVAVQSGESKREKGL 229 Query: 213 DKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGA 272 M+ L ++ V A ND M +GA++A++A + I + G DA EA+ +K G+ Sbjct: 230 SVMENILQS--NPDVQGVFAVNDMMGLGALQAVQAAQRDDIVIVGFDATEEAVKYIKEGS 287 Query: 273 -LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 L +V + K T + + G+ K + VP V N Sbjct: 288 ALKASVAQNPVELGKTTMETMLKVIAGEQV---------EKNIPVPVELVTAGNA 333 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 240 bits (614), Expect = 5e-62, Method: Composition-based stats. Identities = 88/331 (26%), Positives = 142/331 (42%), Gaps = 27/331 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAH---AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 MN++ L++V A + AA I ++ F + I+ +A+A V Sbjct: 21 MNRREFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQ-GV 79 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 L +D QN +KQ I+ L + V A+ I+ +D A IE+A VPVV ++ Sbjct: 80 NLTESDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRV 139 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +VG D+ + G + + + + L+G+PG Sbjct: 140 DGVQ----GILAHVGADNVKGGEAEASAMVAAFPNG----------AKLFHLQGQPGAGP 185 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A R V L+ K + + TA + A+A +A L+ + +I ND M Sbjct: 186 AIDRNKGVHNVLDPLKDKYQIIFEQTANFARAEALSVTEAGLAANGKP--DAIICANDDM 243 Query: 238 AMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A+GA+EA A N + + ++G DALPEAL V+ G LAGTV Q++ +A A Sbjct: 244 ALGALEACAARNFTDVKIYGFDALPEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAK 303 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K K+V + + + KDNL + Sbjct: 304 NKTEPK-------EKLVLLTPIVIGKDNLDK 327 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 114/310 (36%), Positives = 165/310 (53%), Gaps = 18/310 (5%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 IGV IY++ DNFM++ R +E K + + D +NDQ+ Q +QI+ L +GV L Sbjct: 60 NIGVCIYQFADNFMTLYRADLEGYLKDM-GYSVTIMDGKNDQNTQTEQINTFLQQGVDVL 118 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVGTDSKESGIIQGDL 145 IN V +A T+++ P+VF N+EP LDSY K YVG D+++SG QG+L Sbjct: 119 VINPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGEL 178 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 I D+N DG+I +++ KG+P + DA+ RT Y IK L D + E L Sbjct: 179 I---LETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDANKEVECLYEYLDN 235 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALP 262 WD A+ + L +KIEVV NNDAMA+GA+++++ + + + GVDAL Sbjct: 236 WDQTTAQQDVANAL-SQYGDKIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDALV 294 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 EA+ V G + GTVLND QA + K +GK K V YV V Sbjct: 295 EAVQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDV---------EKYYWVDYVKVT 345 Query: 323 KDNLAEFSKK 332 KDN +++ K+ Sbjct: 346 KDNASQYLKE 355 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 21/320 (6%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA--KAAPDVQLLMNDSQNDQSKQNDQIDV 77 + +D ++GV IY++ DNFM++ R +E K + + D NDQ+ Q +QI+ Sbjct: 73 SGDFSDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIKIMDGANDQATQTNQIEN 132 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD----KAYYVGT 133 + V L +N V+ ++A T+ +K + +P+V+ N+EP + ++ YVG Sbjct: 133 FITDKVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQDEEKRWEEKNWDVTYVGC 192 Query: 134 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKG 193 D+++SG QG++IA D+N +G++ ++++KG+P + DA+ RT + +K L D G Sbjct: 193 DARQSGTFQGEIIASV--GMDKLDMNGNGKVDYIMIKGDPENIDAQYRTEFSVKALQDAG 250 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK--- 250 ++ +L WD A A+ + L N IEVV NND+MA+GA++A++A + Sbjct: 251 MEVNKLDEQVGNWDQALAQSLVANAL-AKNGKDIEVVFCNNDSMALGALQAIQAAGRTVG 309 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 I + GVDAL EA V +G GTV ND Q+ A D A N GK + Sbjct: 310 KDIYLVGVDALEEACQNVLAGTQTGTVFNDFLTQSHAAGDAAINYLGGK---------GN 360 Query: 311 NKVVRVPYVGVDKDNLAEFS 330 + + YV V KDN + Sbjct: 361 DHYIGCDYVKVTKDNAQDVL 380 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 240 bits (613), Expect = 6e-62, Method: Composition-based stats. Identities = 82/341 (24%), Positives = 141/341 (41%), Gaps = 29/341 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAA-HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQ 58 + +++L +SA +A++L A A A IG + + + + K + A DV Sbjct: 4 ITRRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVD 63 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L++ +++ +KQ ++ L+ +G+K L I+ D AA I++ +PV+ + Sbjct: 64 LIVTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLD 123 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 +VG +K G + G IA+ G+ V +KG+P A Sbjct: 124 ------IPVTLHVGPHNKPIGTLAGKYIAEALK----------GKGNVVEIKGDPAVAPA 167 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + G + + + A WD +A M+ L A +I+ V A+ND MA Sbjct: 168 VERHEGFAEAI--AGTEIKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMA 225 Query: 239 MGAVEALKAHNKSS--IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 GA+ A++A + I + G+D A+ V G L T A A LA Sbjct: 226 FGALRAIQAAGRDKEGILIIGIDGENAAIRAVAKGDLTATFTYSTV--APEGVIAAHALA 283 Query: 297 DGKGAADGTNWKIDNK-----VVRVPYVGVDKDNLAEFSKK 332 AA + K + + + K+N AEF K Sbjct: 284 TNDTAALEKLGTLTKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 240 bits (612), Expect = 8e-62, Method: Composition-based stats. Identities = 73/304 (24%), Positives = 124/304 (40%), Gaps = 22/304 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 K + LSA + S+ +A A D I + + ++ F ++ E A +L+ Sbjct: 8 KVSVLLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAEAKAAEL-GYKLIAL 65 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DSQND SK+ ++ L +GVKA+ IN D A I A N+PV+ ++ + + Sbjct: 66 DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHGDI 125 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 ++ +D+ G + G+ IA+ N + + L+G G A R Sbjct: 126 -----VSHIASDNIAGGELAGEFIAQQLGKN----------AKVIQLEGIAGTSAARERG 170 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + E L A +D ++ + M+ L+ ++ V A ND MA+GA+ Sbjct: 171 EGFSNAVTAN--NFELLSSQPADFDRSKGLNVMENMLAA--NGDVQAVFAQNDEMALGAL 226 Query: 243 EALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 A++A I V G D E +A V+ L+ TV A + G+ Sbjct: 227 RAIEAAG-KDILVIGFDGTDEGIAAVRRQQLSATVAQQPELLGATAIMTADRILKGQVVE 285 Query: 303 DGTN 306 Sbjct: 286 KSIP 289 >UniRef50_C0QYC2 Galactose/glucose-binding protein n=9 Tax=Bacteria RepID=C0QYC2_BRAHW Length = 350 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 164/346 (47%), Positives = 226/346 (65%), Gaps = 22/346 (6%) Query: 1 MNKKVLTLSAVMASMLF-----------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M K + ++A+ + IGVTIY+YDDNFMS R+ IE Sbjct: 1 MKKSFIVMAALFIMSSLFVVSCGGGSSSSSTTTTDGPTIGVTIYRYDDNFMSFYRRNIET 60 Query: 50 DAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVP 109 L++NDSQN+Q++QNDQ+DV++ K KALAINLVDP AA T+I+KA+ +N+P Sbjct: 61 RIS--GKANLIINDSQNNQAQQNDQVDVMIQKDSKALAINLVDPQAAQTIIDKAKTKNIP 118 Query: 110 VVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL 169 VVFFNK+PS +A+ SYDK +YVGT +ESG +QG ++ W AN WD N DG IQ+ LL Sbjct: 119 VVFFNKQPSAEAMASYDKTWYVGTTPEESGDMQGKIVVDTWKANPAWDKNGDGIIQYALL 178 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 KGEPGHPDAEART++V + + G+K E+L+ TAMWDTA+AKD +DAW+ +K+E Sbjct: 179 KGEPGHPDAEARTSHVTLYVTNNGLKVEKLEEQTAMWDTAKAKDIVDAWIQKY-GDKLEY 237 Query: 230 VIANNDAMAMGAVEALKAHNKSS-------IPVFGVDALPEALALVKSGALAGTVLNDAN 282 + NNDAMA+GA++A++A + IP+ GVDA+P+ + +K G + G+VLND Sbjct: 238 IFCNNDAMALGALQAVQALGYNKEGDTTKFIPIVGVDAIPDMINEIKKGTVVGSVLNDPV 297 Query: 283 NQAKATFDLAKNLADGKGAADGTNWKIDN-KVVRVPYVGVDKDNLA 327 Q++A D+ N+A GK DGT W +D K VRVPYV + KDN+ Sbjct: 298 GQSQALVDITLNVAAGKDPLDGTTWTLDEVKAVRVPYVPITKDNIN 343 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 70/309 (22%), Positives = 123/309 (39%), Gaps = 31/309 (10%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 D +G + +M + ++++Q A V + D+ +D + I+ +LAK Sbjct: 47 GPDLTVGFAQSGNPNPWMVALTESMQQSADEY-GVNYIYTDANDDMATHVANIEDMLAKD 105 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 + L I ++ V+++A + VPV+ + + V +D G Sbjct: 106 LDILVIAPMEDTGLEAVLDEAAEKGVPVILSARTTQGE------YVTTVYSDQAWEGERC 159 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 +LI + + V L+G G R + ++ E + Sbjct: 160 AELIGEKIPD-----------AKVVELRGIEGTSSVAGREKGFRDVMAEQYPDMEIVVEQ 208 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVD 259 TA + +A D M L + I+ V +ND MA+GAV+A+K + I V G+D Sbjct: 209 TANFSRQEAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGID 268 Query: 260 ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 EA LVKSG + GTV + F++ + + DG+ T VP Sbjct: 269 GQKEAWELVKSGEMLGTVQCSPKH-GPTVFEVIQKILDGETVQKET---------IVPDQ 318 Query: 320 GVDKDNLAE 328 + K+N+ E Sbjct: 319 VITKENVDE 327 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 238 bits (609), Expect = 2e-61, Method: Composition-based stats. Identities = 69/345 (20%), Positives = 123/345 (35%), Gaps = 40/345 (11%) Query: 1 MNKKVLTLSAVMASML---------FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA 51 MNKK +++ A + AA IG++ + + + I A Sbjct: 1 MNKKAISILLTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAA 60 Query: 52 KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 + P+ +++ D+ D SKQ I+ + GV + + + + A +PV+ Sbjct: 61 EKHPEFEVIFADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVI 120 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 +++ ++G D+ + G I G+ IA + +KG Sbjct: 121 LLDRKIDGD-----KYTQFIGADNVDMGRIAGEYIADTL---------LPDGGKVCEIKG 166 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G R + + K K E + ++ A W +A + L ++I++ + Sbjct: 167 LEGTSGGIDRDNGFREGIK-KNDKIEIVAVNNADWLREKAITVAEEMLQT--NDEIDLFL 223 Query: 232 ANNDAMAMGAVEALKAHNK-SSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKA 287 A ND MA GA A K + I G D LP + V G L+ T + Sbjct: 224 ALNDPMAEGAYIAAKNAGREGDILFVGFDGLPTPDGGIRSVMDGRLSMTQVYPTG--GTE 281 Query: 288 TFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + A L K +K + + V DN E +K Sbjct: 282 AIESAYQLL--------VEGKELDKTLTLTSEIVTPDNAEELLEK 318 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 29/322 (9%) Query: 12 MASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQ 71 M + A IG ++D F+ + ++ +V+++ D++ND Q Sbjct: 32 MGTESVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQ 91 Query: 72 NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYV 131 Q++ L+A+GV A+ VD A ++++A+ VPVV N++ + YV Sbjct: 92 IAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE------DAYV 145 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 G+DS ++G IQ + +A G+ + ++ G+ GH RT + + D Sbjct: 146 GSDSLQAGTIQMEEVAAVLK----------GKGKIAIMNGQMGHTAQINRTLGNKQVV-D 194 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK- 250 + E + T W + K+ M++W+ + V+ANND MA+GA+ A + Sbjct: 195 QYPGMEVVIEGTGGWSREKGKELMESWIES--GQTFDAVVANNDEMAIGAIMAAEEAGIV 252 Query: 251 SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 + G+D P+AL + G L +V DA Q + + A LA G+ A TN Sbjct: 253 DELVFAGIDGTPDALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESAEKMTN---- 308 Query: 311 NKVVRVPYVGVDKDNLAEFSKK 332 +PY + K N+ E+ KK Sbjct: 309 -----IPYETITKRNVDEYKKK 325 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 238 bits (607), Expect = 3e-61, Method: Composition-based stats. Identities = 105/314 (33%), Positives = 167/314 (53%), Gaps = 21/314 (6%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAP--DVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 ++GV IY++ DNFM++ R +E + + D NDQ+ Q QID + +GV Sbjct: 78 KKVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGV 137 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA----LDSYDKAYYVGTDSKESG 139 L IN V+ ++A T+ +K +P+V+ N+EP + D+ YVG D+++SG Sbjct: 138 DVLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSG 197 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 QG++I+ DLN +G+I +V+++G+P + DA+ RT Y +K L D G++ L Sbjct: 198 TFQGEMISDL--GLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGLEVNCL 255 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVF 256 W QA+ + L G N +EVV NNDAMA+GA++A+++ + + I + Sbjct: 256 SDQVGNWQQDQAQQIVANAL-GQYGNDVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLV 314 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVDAL EAL V +G + GTV ND +Q+ + D A N G ++ + Sbjct: 315 GVDALSEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITG---------AGNDHYIGC 365 Query: 317 PYVGVDKDNLAEFS 330 YV V KDN + Sbjct: 366 DYVKVTKDNAQDVL 379 >UniRef50_B2S3D7 Methylgalactoside ABC transporter, periplasmic galactose-binding protein n=2 Tax=Treponema pallidum RepID=B2S3D7_TREPS Length = 354 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 178/357 (49%), Gaps = 29/357 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + ++ ++ ++ GA + IGV +Y+YD+ ++ +R + K ++L Sbjct: 1 MKGTGMCVALLLCALGAGACKRSEKPTIGVVVYQYDNTLVARLRHILSTVGKKH--ARIL 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DSQ QS QN ID +A+GV LA+NLVD AA TVIEKA+ +P+VFFN+ P Sbjct: 59 IVDSQASQSIQNKHIDQFIARGVHGLAVNLVDHRAARTVIEKAQQARIPLVFFNRMPDLS 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 L+ Y +AYYVG E G++Q L+A++ D N DG IQ V+LKG+P H Sbjct: 119 DLNRYARAYYVGVKDDELGLLQSRLVAQYLERTPSADKNADGIIQCVVLKGDPDHKSGAR 178 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 YV + L + G+K E + A+ + + M + ++IE V ANND A+G Sbjct: 179 CARYVCQALREIGLKGEIIGEAFALDSRVKGQAAMHTLIHTH-GDRIEAVFANNDDAALG 237 Query: 241 AVEALKAHN----KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+EAL++ +PV G+DA AL ++ + GTVLND ++Q KA +L L Sbjct: 238 AIEALQSAGFFKENKRVPVVGIDATASALKAIEEDLMLGTVLNDVSSQGKAILNLLFALM 297 Query: 297 -------------------DGKGAADGTNWKIDNKVVRVPYVGVDKDN---LAEFSK 331 +G + + V +PY V K+N + + + Sbjct: 298 GDSVPSIPAEDSTAFTHAGNGVAGRAAVFGTAEKQCVWIPYKVVTKENYRTVQNYLR 354 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 131/311 (42%), Gaps = 28/311 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A+ I + + F +R++ ++ A + + D+ +D + Q++Q+ Sbjct: 41 TTGSASAKTITFALSTQANPFFVQMRESAQKKADEL-GLAINFQDAADDSATQSNQLANA 99 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 A G + IN D A +++ + +PVV ++ A+++ + A Y+ +D++ Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDR-----AVNNANVASYIASDNETG 154 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G +++ +G+ + ++L+G+ G + R + L D + Sbjct: 155 GKQAAKVLSDAI----------NGEGEILVLQGKTGSSASRERGKGFDEGLKDN-PNIKV 203 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 + TA ++ A+ D L ++ + A ND MA+GA+EAL + + V G Sbjct: 204 VAKQTAEFERAKGLDVTTNLLQAH--PNVKAIFAENDEMALGAIEALGSKAGKDVKVIGF 261 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY 318 D +AL +K G + ++ A+ A L G+ A K ++V Sbjct: 262 DGAEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETAT---------KKMQVEV 312 Query: 319 VGVDKDNLAEF 329 V K+N+ +F Sbjct: 313 VAATKENVDKF 323 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 130/308 (42%), Gaps = 28/308 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +D IG + + +++ +A+ +L++ D+Q++ +KQ ++ L+A+ + Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKR-GFKLIVTDAQDNTAKQVSDVEDLIAQNI 145 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 L ++ + T ++ A+ +VPV+ ++ +A D Y+ TD G G Sbjct: 146 DLLILSPREFEGLETALQTAKENSVPVILVDRLAKGEA--GVDYVTYIATDFVWEGQAAG 203 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 + + G + L G G A+ R T + D+ + + T Sbjct: 204 EWLKDKTG----------GTCNIIELTGTVGSSSAQDRATGF-AGVVDQNEGMKIIASQT 252 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDA 260 ++ ++ + M+ L +++ V +ND MA+GAV+A+KA I V G+D Sbjct: 253 GNFERSEGQKVMENLLQAH-GGEVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDG 311 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 ++ V +G ++ TV++ TFD + + G+ + T + V Sbjct: 312 EMDSFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPEQT---------IMEGVV 361 Query: 321 VDKDNLAE 328 VD N E Sbjct: 362 VDAGNAQE 369 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 68/317 (21%), Positives = 118/317 (37%), Gaps = 30/317 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A A T+IG ++ ++ F ++ +E+ AK L+ ++ D +Q + L Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQ-GFDLVQTNANGDAQQQVNDAINL 119 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 L++GV AL +N +D A +EKA N+PV ++ D +V +D+ Sbjct: 120 LSQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDR-----GSDGGKVTSFVASDNVAL 174 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G IA G + V L G G A R E+ K + Sbjct: 175 GQTAAKWIADQLTKRYGSA-----KGNVVDLIGLVGTTAATDREKGFSDEIA-KYPDIKV 228 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-------KS 251 + +D ++ + M L +I+ V ND +GA +A+ K Sbjct: 229 VARQEGAFDQEKSLNAMTNILQKY--PQIDAVFGANDDNTVGAEKAIDNAGRYKPLDDKQ 286 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 I V G D +AL+ +++G T+ + A + + K W Sbjct: 287 HILVIGADGTAQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAW---- 342 Query: 312 KVVRVPYVGVDKDNLAE 328 P + +DK N+ Sbjct: 343 -----PTLLIDKSNIDS 354 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 138/334 (41%), Gaps = 27/334 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K +L + +L A A + IG + + D + + ++ A+ + DVQ+ Sbjct: 1 MKKTLLAM-LCGGLLLTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIK 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + DS +D + Q + + + + V AL + DP + A+ +P++ N++P+ + Sbjct: 60 LADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDE 119 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + +VG+D E G IQG+ I A ++L G G Sbjct: 120 HMQ--YVTSFVGSDEIEGGRIQGNFIVNTLAGKNAES---------LILLGPLGQDAVTK 168 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 RT +E+ + + + W+ + + L+G I V+++NND MA+G Sbjct: 169 RTQG-NEEIFAQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKG--INVIVSNNDEMAIG 225 Query: 241 AVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 A+ A + I + G+DA P+AL + G L TV A Q ++A A G Sbjct: 226 AILATRKLGIKDEDITIVGLDATPDALEYLGKG-LDATVFQSAQGQGYTGAEMAYLAAKG 284 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + V VP+ V D E+ + Sbjct: 285 EKVPS---------VKWVPFELVTPDKKEEYQAR 309 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 127/330 (38%), Gaps = 38/330 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAA------------------------HAADTRIGVTIYKYD 36 M KK++ L + ++ IG + + Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 37 DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 96 ++ +++ +L+ D+Q Q Q + +++ V +AI V Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120 Query: 97 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW 156 TV+ +A+ ++PV+ ++ K D + +VG+D ++ G+ + + + Sbjct: 121 ETVLGEAKDADIPVIIVDRMI--KVSDDSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKT 178 Query: 157 DLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 D V+L+G G RT + K L T + A+ ++ M+ Sbjct: 179 DKQ-----NVVVLQGTIGSSAEIGRTKGFGDTIK-KYDNFNILAQQTGEFTQAKGQEVME 232 Query: 217 AWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGAL 273 ++L N I+VVIA ND MA GA++ALKA K + + DA+ A + +G + Sbjct: 233 SFLKQY--NDIDVVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKAAFKSMIAGDM 290 Query: 274 AGTVLNDANNQAKATFDLAKNLADGKGAAD 303 +V + + +LAK L + + Sbjct: 291 NVSVECNPLH-GPRVAELAKKLMNDEKVEK 319 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 85/312 (27%), Positives = 127/312 (40%), Gaps = 26/312 (8%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 AHAA +IG + F +++ E AKA D +L+ D+ D +KQN+ I LL Sbjct: 29 AHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGD-ELIFLDANGDVNKQNNDIQDLLT 87 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + V L IN V+P A I A+ VPV+ ++ + ++G D+ + G Sbjct: 88 RKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGG-----VTAHLGRDNVKMGK 142 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 GD + + + + ++G+ G AR L G + + Sbjct: 143 AVGDAVLAELKKKGTT------RGKVIEIQGDAGGTVMAARRDGFHDALKGSG--FKIVA 194 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 260 A + A A M L ++VV A+ND MAMGA++ L K + V GVD Sbjct: 195 GPYAEYTRANAVTAMQDLLQAH--PDVKVVYAHNDDMAMGALKVLAEAGKKDVFVAGVDG 252 Query: 261 LPEALALVKSGALA-GTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYV 319 L EALA + G T LND T A+ + GK V Sbjct: 253 LSEALASMAGGDQYVATALNDPRYLGDMTVQTARAIKAGKKVPA---------FVDAGTK 303 Query: 320 GVDKDNLAEFSK 331 V K N+ EF + Sbjct: 304 AVTKANVGEFKR 315 >UniRef50_A6LSD8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LSD8_CLOB8 Length = 349 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 112/350 (32%), Positives = 193/350 (55%), Gaps = 27/350 (7%) Query: 1 MNKKVL---TLSAVMASMLFGA----------AAHAADTRIGVTIYKYDDNFMSVVRKAI 47 M KK+L +M+ MLF AA R+ V + + D+++S+VRK + Sbjct: 1 MFKKMLSIIMFLMIMSYMLFSFKEKATFASINAAEKRPIRVAVFLINFSDDYISLVRKDL 60 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV---DPAAAGTVIEKA 103 E + P V+ D++++Q+ QN+Q+D +L +GV + ++LV D V + Sbjct: 61 EDIQEENPGKVEFTFYDAKSNQAVQNEQLDNVLKEGVDLIIMHLVKNRDELTVKRVTNQI 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKDG 162 N+PV+FFN+EP + Y+K+ Y+G D+K GI++G+++A W N D N DG Sbjct: 121 AKDNIPVIFFNREPLLSEIKRYNKSLYIGLDAKSDGIMEGEILANEWNTNRDSIDKNHDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 +Q+VLL+GE + A RT Y + L++ G++T++L+ A W AK+ +++ L Sbjct: 181 IMQYVLLEGERNNLVAADRTKYSLLALSEAGVETQELERVFAYWSRELAKEAVES-LFLK 239 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHNK------SSIPVFGVDALPEALALVKSGALAGT 276 KIE +IAN+D+MA+GA+EAL+++ +I V GV+ LPE+ L+ G + GT Sbjct: 240 TGPKIEAIIANDDSMALGAIEALQSYGYNLGDKEKNIAVVGVEGLPESQKLINEGLMLGT 299 Query: 277 VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVDKD 324 + D A+A + + N+ G+ +GT+++ D +R+P + K Sbjct: 300 IFQDPKAMAEALYTIGMNMVKGRDPIEGTDYQFDQTGVAIRIPNQIIYKK 349 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 234 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 120/325 (36%), Gaps = 32/325 (9%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQLLMN 62 +L L + + L IGV+ +D + + + ++++ D ++L+ Sbjct: 7 HILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEVLIR 65 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 ++D KQ I+ + + V L ++ + A VIEKA Q +PV+ +++ + ++ Sbjct: 66 SVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATES- 124 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 YVG ++ + G G G+ ++G G R Sbjct: 125 ----YTAYVGANNYQIGKEAGLYAIGVLK----------GKGNIAEVRGTKGSTSDAERH 170 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + L + + + + + A AK +M I++V A ND MA G Sbjct: 171 KGFVDALKNA-PEVQIVAETWGNFLQADAKTQMQQIFQEH--PHIDLVFAMNDPMAAGTH 227 Query: 243 EALKAHNKSSIPVFGVDALPE-ALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 EA N + GVDAL + + +++ + + + +LA + + Sbjct: 228 EAAMQFNGKIPFIIGVDALQQVGIQNIENSVQDASFIYPTG--GEKVIELAMKILHKQPF 285 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNL 326 + VDK N+ Sbjct: 286 QREN---------ILNTTVVDKSNV 301 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 234 bits (599), Expect = 3e-60, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 134/348 (38%), Gaps = 41/348 (11%) Query: 5 VLTLSAVMASMLFGAAAHAAD------------------TRIGVTIYKYDDNFMSVVRKA 46 + +LSA L G A+ A +IG ++Y + + Sbjct: 1 MFSLSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAG 60 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 + A+ A +++++ D ++ Q +Q L+ +G+ AL I V P+A + I+ A G+ Sbjct: 61 VRAGAEEA-GIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGE 119 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV + D Y+ +++ E G + + + + G Q Sbjct: 120 KIPVVVADIGTEG------DYDGYILSNNYEGGRLAAEHVVEKLG-------GTPGPHQV 166 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 +++ G E R + + L ++ E + LS + Sbjct: 167 GVIELHAGSVVGEERVSGFVDRLGEE-ENFEIVSSLDGNDTVDGGFTAAQDMLSA--NPE 223 Query: 227 IEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANN 283 ++V+ A ND A+GA A++ + + G D AL L++ G ++GTV D Sbjct: 224 LDVIYAANDDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLIEQGVMSGTVAQDPFG 283 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 Q + + A L +G+ K + P V +N+AEF Sbjct: 284 QGQKAVETALALLNGEDPGYSDEAT---KTIYFPVEMVTAENVAEFRA 328 >UniRef50_UPI0001C3521B periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3521B Length = 372 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 106/316 (33%), Positives = 174/316 (55%), Gaps = 10/316 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 ++ G+T Y Y D ++ VR + + A+ V + +DSQ D Q + +D + Sbjct: 52 SNGERPVAGMTCYMYSDTHIANVRNTVLKAAET-GTVAVETSDSQFDVGLQMNAMDAFVT 110 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE-PSRKALDSYDKAYYVGTDSKESG 139 KG K L IN ++ A VI+ AR ++P++F+N + PS + +DSY Y+V + +++SG Sbjct: 111 KGCKYLVINNINTNAKDQVIDVARKADLPIIFWNTDSPSDEEMDSYGPCYFVSSAAEQSG 170 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 ++QG+ AK+W + D N +G++ +V+L G+ G+ D E RT Y I + + G++T L Sbjct: 171 VVQGEAAAKYWKEHPEADRNGNGKMDYVMLMGQIGNYDTEMRTKYSIDTVKEAGVETNCL 230 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-----SSIP 254 W A+A+D+M + +S NA+ I++V ANND MA+GA+EALKA + IP Sbjct: 231 LEVVCEWQRAKAQDQMASVISA-NADDIDIVFANNDDMALGAIEALKAAGYFTDESNYIP 289 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK--IDNK 312 V GVDA L ++ G + T LN+ K + + + L G+ D+K Sbjct: 290 VLGVDATKVGLQALEDGTMLATSLNNPVIMGKCIYKILELLEAGEEITSENLGYDIDDHK 349 Query: 313 VVRVPYVGVDKDNLAE 328 V + YV + KDNL + Sbjct: 350 RVWLDYVAITKDNLED 365 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 232 bits (593), Expect = 1e-59, Method: Composition-based stats. Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 29/306 (9%) Query: 27 RIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 ++ + DD F ++ + AK+A + + D++ D + Q DQ++ ++ A+ Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSA-GLDVEFLDAKGDSNLQIDQLNEAISNKAAAI 128 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + +D + +EKAR +PVV N++ + + +D +E+G +QG+ + Sbjct: 129 VLLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL------SDDREAGRMQGEFM 182 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 A H N + V L GE A R + DK + L W Sbjct: 183 ASHLPPN----------AKVVYLMGESSLSVAVKRWEGFKEACLDKRPDVKLLASVDGSW 232 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEAL 265 A+ M WLS +I V+A ND MA+GA++ALKA N+ + V GVDA P L Sbjct: 233 SKAEGMKAMTLWLS--FFPEINGVVAANDEMALGAIQALKAANRLNGCLVTGVDATPAGL 290 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 A V++G L+ TV DA QA L + GK + + +P+ + ++N Sbjct: 291 AAVEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKAPTES---------LDIPFTSITREN 341 Query: 326 LAEFSK 331 +A+F K Sbjct: 342 VAQFVK 347 >UniRef50_B2TNA6 D-galactose-binding periplasmic protein n=3 Tax=Clostridium botulinum RepID=B2TNA6_CLOBB Length = 352 Score = 232 bits (592), Expect = 2e-59, Method: Composition-based stats. Identities = 116/339 (34%), Positives = 189/339 (55%), Gaps = 24/339 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT-------------RIGVTIYKYDDNFMSVVRKAI 47 M KK+L+++ ++ M+ + ++GV +YK++D ++S+++ ++ Sbjct: 1 MKKKLLSINMIIIVMILMFFGVNENIVANCSNFDSEKAAKVGVLLYKFNDEYISLLKNSL 60 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA--AAGTVIEKAR 104 E+ K P+ V+ + D+ D+ KQN ++D LL + V L +NLVD + + V+++ + Sbjct: 61 EEIQKENPNKVEFIFLDAYGDEKKQNKELDKLLKEKVDLLLVNLVDTSEGSTQKVVDRIK 120 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGW-DLNKDGQ 163 NVPV+FFN+EP K + + + E+GI+QG +++ W N+ D NKD Sbjct: 121 ENNVPVIFFNREPISKIPIKSYEKAVILSRIPEAGILQGQIVSDLWNDNKKMIDKNKDNI 180 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 +Q+V+L GE A +RT VIK + D GI+ ++L+ + WD AK + + L Sbjct: 181 MQYVMLTGESSDLTAISRTKNVIKTIKDNGIEIQELEKKNSKWDRELAKQNIASLL-YQY 239 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTV 277 NKIEV+IANNDAMA+GA+EAL+ N ++ I V G+DA P+A L+ G +AGTV Sbjct: 240 GNKIEVIIANNDAMAIGAIEALQKQNYNNGDLNNTIIVVGIDATPKAKELINEGYMAGTV 299 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 D +A A + L NL GK + T +K D V V Sbjct: 300 FQDPKEEADALYTLGMNLISGKNPIENTQYKYDETGVTV 338 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 122/327 (37%), Gaps = 32/327 (9%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA-PDVQLL 60 +L L + + L IGV+ +D + + + ++++ + +LL Sbjct: 14 KYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTELL 72 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + ++D KQ I+ + + V L ++ + A VIEKA Q +PV+ +++ + + Sbjct: 73 IRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIATE 132 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + YVG ++ + G G G+ ++G G Sbjct: 133 S-----YTAYVGANNYQIGKEAGHYAIGILK----------GKGNIAEVRGTKGSTSDAE 177 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + LN+ + + + A AK +M I++V A ND MA G Sbjct: 178 RHKGFVDALNNA-PEVRIVAETWGNFLKADAKVQMQQLFQQH--PNIDLVFAMNDPMAAG 234 Query: 241 AVEALKAHNKSSIPVFGVDAL-PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 EA N + GVDAL E ++ +++ + + + DLA + + Sbjct: 235 THEAAMQFNGKIPFIIGVDALQQEGISNIENNVQDASFIYPTG--GEKVIDLAMKILHKQ 292 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNL 326 + + VDK N+ Sbjct: 293 PF---------ERENILNTAVVDKSNV 310 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 64/312 (20%), Positives = 125/312 (40%), Gaps = 33/312 (10%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 +A RIG + D + + ++++ P+ LL D++N ++Q QI L Sbjct: 43 SATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQISQIQAL 102 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + +G+ L ++ + A VIE + +PV+ +++ ++ Y+G D+ E Sbjct: 103 IDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETES-----YNAYIGGDNVEI 157 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + G I H G+ + V + G P A+ R +++EL K + Sbjct: 158 GRLAGVFIGNHLK----------GKGRIVEIWGLPSSSPAQERHRGLLEELR-KYPGIQV 206 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFG 257 ++ W+ + A L+ +++V A+ND MA+GA K + G Sbjct: 207 VKELNGQWERDTVGRVVAAELNTL--KDVDLVFAHNDVMALGAYAVCKQKGIEKKLDFVG 264 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +DALP + + G L + L + + A + GK + Sbjct: 265 IDALPGPNAGMQAITDGILKASFLYPTG--GEEAIETATRILAGKSVK---------REQ 313 Query: 315 RVPYVGVDKDNL 326 + + +D N+ Sbjct: 314 VLNSIQIDGSNV 325 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 61/315 (19%), Positives = 124/315 (39%), Gaps = 30/315 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDV 77 + V I +D+ F S V A+++ + D + + DS+ D + Q Q++ Sbjct: 60 GGTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVEN 119 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + G +A+ VD + ++ + VP++ FN+ + +VG D Sbjct: 120 QILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFE-------NCDSFVGADGAV 172 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 +G + + G+ ++ G G + R +++ L + + Sbjct: 173 AGSLLARFTGEKTG----------GKGNVAIVNGIMGQENQFIRRDAIVETLGEMYPDMQ 222 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVF 256 + W +A ++ WL I+ ++ ND MAMG A++ K I V Sbjct: 223 VVIEGAGDWKRDKALQLVETWLQS--GTDIDAILCLNDDMAMGTQLAVEQAGKSDDIIVC 280 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GV+ P+ + V+ G +A TV + + QA+ + A G+ + + Sbjct: 281 GVNGDPDGINAVRDGKIAATVFQNPDRQAEEALEAALQYIHGEKP---------ESKIMI 331 Query: 317 PYVGVDKDNLAEFSK 331 P+ V DN+ ++ + Sbjct: 332 PFELVTADNVDDYVQ 346 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 68/340 (20%), Positives = 123/340 (36%), Gaps = 32/340 (9%) Query: 1 MNKKVLT----LSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 M K ++ A+ A L G +G + + + +I+++A Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 57 -VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 L+ D+Q SKQ I+ L+A+ V + + + +E AR +P+ ++ Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 E + + ++G+D G G+ +AK DG+ V L G G Sbjct: 121 EAAGRP--GEHFVSFLGSDFIAQGRRVGEWLAKA----------TDGKASIVELTGTAGS 168 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 A R + + + TA + A A M+ + + I V A+ND Sbjct: 169 SVAIDRAKGFRNAIA-TYPNMKIIATQTADFSRAAAVRVMENIIQA-KGSDITAVYAHND 226 Query: 236 AMAMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 MA+GA++ALK+ + V +D AL + G L +V ++ F Sbjct: 227 EMALGAIQALKSAGMKPGKDVMVGSIDGQKAALEAIIRGELGVSVESNPRF-GPLVFATM 285 Query: 293 KNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + GK + + D N +F + Sbjct: 286 EEYFAGKKIP---------PRIILKDRLFDVTNAKDFVNE 316 >UniRef50_C4ZH94 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridiales RepID=C4ZH94_EUBR3 Length = 325 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 155/340 (45%), Gaps = 25/340 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADT--------RIGVTIYKYDDNFMSVVRKAIEQDAK 52 M +K+ + +++ +F A + T +I +++ DD F + +Q+A Sbjct: 1 MKRKLAYMLSILLCGVFLATGCGSQTTGAGSSNVKILLSVNAIDD-FRQTLVDTAQQEAD 59 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 A VQL + D++++ Q + I A+G A+ V A + KA ++P+VF Sbjct: 60 AR-GVQLDVFDAEDNIENQVEHIKKAAAEGYDAILCGPVSTDTAVEL--KANAGDIPIVF 116 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 FN P+ K L YVG+D +G Q + + +A +I V+ KG Sbjct: 117 FNSCPNEKQLSEGQYI-YVGSDESVAGQYQAEYVLDKFADRD--------EINVVIFKGP 167 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 GH RT V K L G K + D A WD A + + +L +K + VI Sbjct: 168 KGHSATIGRTKGVKKTLEASGKKINYVFEDYANWDGDTAGEMFELFLKT--GSKADCVIC 225 Query: 233 NNDAMAMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 NND MA+G +EA K +S+P+ GVDA + +++G +A TV + Q KA D Sbjct: 226 NNDGMALGVIEACKNAGIDLNSLPILGVDATADGCTAIENGDMAFTVYQSGSGQGKAAID 285 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A+ L G+ D D V VP+ VD +N++ + Sbjct: 286 AARKLISGQSVQDIEGAADDGLYVWVPFEKVDSNNVSSYK 325 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 72/332 (21%), Positives = 126/332 (37%), Gaps = 37/332 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA--ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M + L ++ ++LF A + IGV+ +D + + + +V Sbjct: 3 MKQ---WLYILIFTLLFSACSDNNVKKYVIGVSQCS-EDIWRDKLNNELVMSTYQHDNVT 58 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L + ++ Q QI+ + +GV L ++ +VI+KA +PV+ F+++ Sbjct: 59 LKFASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKT- 117 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 DS ++G D+ E+G G+ I + DG+ + G A Sbjct: 118 ----DSKKYTAFIGADNYEAGYEIGNFIGQQL----------DGKGNIAEICGLQASSPA 163 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + L D + + W MD+ LS I+ V A ND MA Sbjct: 164 IERNRGFMDALKD-YSGIKVIARKHGDWVKESGVMAMDSVLSQAKEP-IQYVFAQNDRMA 221 Query: 239 MGAVEALKAHNKSSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 +GA++++K H I + G+DALP + V+ G L + + + LA N+ Sbjct: 222 LGALQSIKKHKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNI 279 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 + K K V K N Sbjct: 280 LEKKPYKRDNYLKG---------ALVTKANAN 302 >UniRef50_Q2RGX1 Periplasmic binding protein/LacI transcriptional regulator n=21 Tax=Bacteria RepID=Q2RGX1_MOOTA Length = 381 Score = 231 bits (589), Expect = 4e-59, Method: Composition-based stats. Identities = 76/318 (23%), Positives = 134/318 (42%), Gaps = 29/318 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 +A + +IG+++ R AK ++L+ + D + Q Q + Sbjct: 41 ASAKNGDKIKIGLSMDDLRQERWQHDRDLFVAKAKEL-GAEVLVQSANGDDATQLSQAEN 99 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 L+++G+ L + + A ++E A V V+ +++ +D Y+ D+ Sbjct: 100 LISQGINVLVVIPHNGDAMAPIVEAAHKAGVKVLAYDRLIRNADVDL-----YISFDNVR 154 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGI 194 G +Q + + K + ++ L+ G P +A+ V+K L DKG Sbjct: 155 VGELQAEYLTKKVP-----------KGKYFLMGGSPTDNNAKLFRQGQMNVLKPLIDKGD 203 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSI 253 W +A M+ L+ N N+I+ V+A+ND+ A GA++AL A N + Sbjct: 204 IKVVGDQWVKDWLPEEAMKIMENALTS-NNNQIDAVVASNDSTAGGAIQALAAQNLAGKV 262 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 + G DA A + G + TV A ++A LA G+ G N K++N Sbjct: 263 AISGQDADLAACQRIVEGTQSMTVYKPITTLATRAAEVAVALAKGENI--GANNKVNNGK 320 Query: 314 VRVPYVG-----VDKDNL 326 + VP V VDKDN+ Sbjct: 321 IDVPSVLLTPIMVDKDNM 338 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 230 bits (588), Expect = 5e-59, Method: Composition-based stats. Identities = 76/316 (24%), Positives = 121/316 (38%), Gaps = 28/316 (8%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A A RIG + + + + K I +A PDV+L++ D ++ KQ ++ L Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + V AL ++ + A V+++A +PV ++ +VG D+K Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETD-----QYTQFVGGDNKLI 142 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE- 197 G G+ + Q V + G G A R + DK + Sbjct: 143 GRAAGEYAVELLGGKGKA------QGNIVEIWGGMGTQPAHDRHDGFHE-FTDKEPGIKN 195 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVF 256 L + W QA + M L N KI++V +ND MA GA A K + I Sbjct: 196 LLDKQSGDWKQDQAYNIMATALR--NNEKIDLVYGHNDPMAYGAYLAAKDAGREKEIKFI 253 Query: 257 GVDALP-EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 G+DALP E + V +G L T L A G+ K V Sbjct: 254 GIDALPNEGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKV---------EKTVT 302 Query: 316 VPYVGVDKDNLAEFSK 331 + + V ++N A+ K Sbjct: 303 LDTLKVTEENAAQIMK 318 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 160/332 (48%), Gaps = 23/332 (6%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 K + +AV+A+++ G A+ IGV++ +DDNF +++R+ ++ A V L + D Sbjct: 2 KSIFTAAVLAALMAGTASAE---TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIED 58 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 +Q D ++Q +Q++ +A V A+ I L D +AA + A+ +P+V+ N EP Sbjct: 59 AQADIARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPEN-INR 117 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 YVG+ ++G + + + GQ Q +L G+ H + RT+ Sbjct: 118 LPKNQAYVGSKETDAGRLGAEAACQLLKKKGKA-----GQAQIYILMGDLAHQASRDRTS 172 Query: 184 YVIKELNDK-GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 V + L +A W A D W++ I+ + AN+D MA+GA+ Sbjct: 173 AVKETLAAGECKGVTIADERSAAWMRTNAMDVTTNWITT--GRPIDAIFANSDEMAIGAI 230 Query: 243 EALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 +ALKA K+ + V GV+A + L ++ G L TV +A Q+ + D A LA GK Sbjct: 231 QALKAAGVSKNDVIVVGVNAAQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKS 290 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 ++ V VP+ V +N+A+++ K Sbjct: 291 V---------DRQVMVPFELVTPENMAKYNNK 313 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 230 bits (587), Expect = 7e-59, Method: Composition-based stats. Identities = 62/283 (21%), Positives = 119/283 (42%), Gaps = 16/283 (5%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 +G + + + + ++I+ A+ A ++L +D+Q Q Q I +A+ V Sbjct: 30 KPIVLGFSQVGAESEWRTANTESIKSAARDA-GIELKFSDAQQKQENQIKAIRSFIAQRV 88 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 +A + V + V+ +A+ +PVV ++ + K D+ ++G+D E G G Sbjct: 89 DVIAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTK--DTSLYVTFMGSDFVEEGRKAG 146 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 + + G + V L+G G A R + + K + ++ T Sbjct: 147 RWLVEKMKDA-------KGDVNIVELQGTVGSAPAIDRKKGFEEVVK-ADPKFKIIRSQT 198 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDA 260 + A+ K+ M+A+L KI V+ A+ND MA+GA++A++ I + +DA Sbjct: 199 GDFTRAKGKEVMEAFLKA-EGRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDA 257 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAAD 303 + A + +G L TV K++ GK Sbjct: 258 VKGAFEAMMAGKLNVTVECSP-LLGPQLMAAVKDIKAGKTVPK 299 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 120/316 (37%), Gaps = 27/316 (8%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQID 76 A+ + D IG ++ + + + +A+A +++ D Q I+ Sbjct: 64 AASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIE 123 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDS 135 ++A V + + + + K + +P++ + + + ++L + + GT++ Sbjct: 124 NMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYGTNN 183 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 E + G+ +AK++ +LKG G +A R I+ G Sbjct: 184 YEGAKLAGEYVAKNFEKGTKT----------AILKGIEGQTNAADRYNGFIEG---AGDT 230 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIP 254 + TA W+ Q +S +E+ ND M +GA+ A+K N I Sbjct: 231 VTVVAEQTANWEVDQGYTAAQNIISA--NPDVELFFCCNDNMGIGALRAIKEANMQEQIQ 288 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 + G DA+ EAL LV++G TV K D + DG A + Sbjct: 289 IIGFDAVSEALNLVENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEA---------ESYI 339 Query: 315 RVPYVGVDKDNLAEFS 330 + KDN+ EF Sbjct: 340 DTGTEVITKDNVGEFK 355 >UniRef50_A6E6Q9 Sensor protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6Q9_9SPHI Length = 918 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 61/326 (18%), Positives = 115/326 (35%), Gaps = 35/326 (10%) Query: 7 TLSAVMASMLFGAAAHAAD--TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 L + A + F IG + D + + ++ + P +L+ D+ Sbjct: 8 LLLFITALLSFSCNQKQEKHAYLIGFSQCVGSDLWRKTMLDEMKMELSLHPGAKLVYADA 67 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 N+ + Q Q+ +L +G+ L I+ + ++E+ +PV+ +++ + S Sbjct: 68 DNNSNTQIKQVKEMLDQGIDLLIISPNEAKPLTEIVEQTYSDGIPVIVIDRKTT-----S 122 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 YVG D+ + G + + G + + G PG R Sbjct: 123 NLYTCYVGADNYQIGYMASQYLGNTI----------SGPANILEVMGLPGSSPTIERNKG 172 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 L K + W A+ ++ N I+VV A+ND MA A Sbjct: 173 FNDGLK-KFPNLKIKSQVYGDWMKPNAERQLSKI--SDQLNDIDVVFAHNDNMAFAAQSV 229 Query: 245 LKAHNK-SSIPVFGVDALPEA---LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 K S G+DA P A L ++ +G + ++L K A + D Sbjct: 230 FKKLGIASQAKFIGIDATPGAGGGLQMISNGLIDASMLYPTG--GKEAITTAIKIMD--- 284 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNL 326 +K + +P + +D N+ Sbjct: 285 ------KIPFSKELILPSLVIDSSNV 304 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 229 bits (584), Expect = 1e-58, Method: Composition-based stats. Identities = 56/316 (17%), Positives = 112/316 (35%), Gaps = 29/316 (9%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLMNDSQNDQSKQNDQID 76 ++ + I D F ++ IE AK P V++ + DS+++ + Q + Sbjct: 46 ASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQ 105 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 + V + I+ D A+ V+ A +PVV + DS + ++ TD+ Sbjct: 106 DAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDI-----GTDSGEYVSFISTDNS 160 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 G+ +A + + + R + + +K + Sbjct: 161 GGAKKLGEYVADKLNKGD----------EIAQIALNQARKNGVLRKEGFEEGIKEKLKEV 210 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + Q++ + ++ ++ + +++ +MGAV ALK N + Sbjct: 211 DFRQMEKVN--RDEGVRYTQDLITSY--PNLKCIFCHSEDPSMGAVTALKEINNDKCKIV 266 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G D PE + +KSG + T + D K DG K + V Sbjct: 267 GFDCSPEVVEAIKSGDILATAAQQPVFMGRTAVDCLKTHLDGGTP---------EKEISV 317 Query: 317 PYVGVDKDNLAEFSKK 332 + V +DN+ + K Sbjct: 318 DTLLVTQDNINDVYDK 333 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 49/334 (14%), Positives = 111/334 (33%), Gaps = 34/334 (10%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP----DVQL 59 + L A+ S + + A I V + + + + V L Sbjct: 6 RNLLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDL 65 Query: 60 LMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 + ++D+ +Q ++ + + V + + +D A + A +PVV F+ Sbjct: 66 IWKGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFD--- 122 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 AL + +V TD+ + G + + + + +G+ +LL+ G Sbjct: 123 --SALKTDKYVSFVATDNYKGGQLAAERMGQLL----------EGKGNVILLRYAVGSAS 170 Query: 178 AEARTTYVIKELNDKGIKTEQLQL-DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 E R + L K + + A A L+ +++ + + Sbjct: 171 TEEREAGFMDTLKSKFPNIKVISSDQHAGATRETAYQASQNLLNR-FGHEVNGIFCPCEP 229 Query: 237 MAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 + +AL+ K + + G DA +++ +K+G + G V+ + Sbjct: 230 PTVAMAKALRDIGKAGGKVKMVGFDAGSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQ 289 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 G+ K + V +N+ + Sbjct: 290 HLQGEKV---------EKRIDTGVQIVTPENMEQ 314 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 124/316 (39%), Gaps = 22/316 (6%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN------DSQNDQSKQNDQI 75 +I D F + + ++ A+ ++ L+ ++ D KQ I Sbjct: 74 ATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQEL-GIKTLVKFTEEKPNTLGDVKKQISTI 132 Query: 76 DVLL-AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 L+ + L I D +IEKA Q + V+ + + +V D Sbjct: 133 LELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQI-----LTFVTFD 187 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 + E G I G+ + + ++ +I ++L+G + R ++ L Sbjct: 188 NFEGGQILGEWVIQKL----TQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANK 243 Query: 195 KT--EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS 252 E L L +A W+T +AK AWL I+V++A +D MA+GA EA++ NKS Sbjct: 244 NYSLEILDLKSADWETKKAKMITQAWLEKF--PTIDVIMAADDQMAVGASEAVQEANKSG 301 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 I + G D P L +K+G + T+ Q L N + K ++ + Sbjct: 302 IIITGFDGTPYGLNAIKTGQIDATINQLPRTQISLITQLMINSLE-KEQTTLPLCQLIGQ 360 Query: 313 VVRVPYVGVDKDNLAE 328 + + +DN+ E Sbjct: 361 EQTENSLLITQDNINE 376 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 130/329 (39%), Gaps = 34/329 (10%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 N ++L V+ + + A RIGV+ +D + + I ++A DV++ + Sbjct: 5 NLRILFFLLVLWGVAVACSRREARFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVDI 63 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + +D +Q I L+A+GV L + + V+E+A + +PV+ +++ Sbjct: 64 RTAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKIL--- 120 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 S YVG D+ E G G+ +A GQ V + G G A R Sbjct: 121 --SDKYTAYVGADNYEIGKAVGEYVANVLH----------GQGDVVEISGLVGSTPAVDR 168 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 +K ++ L ++ W +A +KMD LS I++V A ND MA GA Sbjct: 169 HQGFVKAIS-AYPGIRLLAVEDGAWLQLKAGEKMDTLLSRF--PHIDLVYAQNDRMAAGA 225 Query: 242 VEALKAHNK-SSIPVFGVDALPE---ALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 A + + G+DAL + V +G L T + +A ++ + Sbjct: 226 YAAAAREGREKDMRFIGIDALSGKDYGVEKVLAGELDATFIYPTG--GDRVMQIAMDILN 283 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + T + VD+DN Sbjct: 284 KRDFPRET---------ILGTSVVDRDNA 303 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 68/339 (20%), Positives = 129/339 (38%), Gaps = 29/339 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAA---HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M +++ + + +++L + + + + + +E+ A PDV Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L+++D+Q D SKQ Q++ + + L + + AA V+ +A +PV+ ++ Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + Y+ +D+ G + G I H V ++G G Sbjct: 121 LQP-----NYTSYIHSDNVAIGRLAGQFIVGHLTKK-----YGKPAGNVVAMRGLLGVEG 170 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R + L DK + + + A W A+AKD+M L KI+VV +ND M Sbjct: 171 EINRDRGAKEIL-DKYPEIKIVADPVADWIQAKAKDRMTEVLRAQ--PKIDVVYGHNDPM 227 Query: 238 AMGAVEALKAHNK-SSIPVFGVDAL---PEALALVKSGALAGTVLNDANNQAKATFDLAK 293 A+GA K + + GVD L + V G LA T + ++ Sbjct: 228 AIGAYLGAKELGREKEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYP--LWVDKAVEIGT 285 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + K + V V +N + +K Sbjct: 286 RILR-------EPGFVPAKDYVLESVMVTTENAPQMYEK 317 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 85/331 (25%), Positives = 138/331 (41%), Gaps = 33/331 (9%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 K V A +++ G A A + + + F + V + + A V++++ Sbjct: 2 KLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAEL-GVKIVVL 60 Query: 63 DS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 ++D Q +Q++ + KGV A+AI + DP A VIE AR +PVVF + + K Sbjct: 61 SPPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGINK 120 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++GTD+K + D I + +L+G +A Sbjct: 121 G------VTFIGTDNKAGAKMAADFICDRVSRGS----------DVAILQGIITQSTGKA 164 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R L G + A WD AQ + M+ L+ K++ V A+ND MA+G Sbjct: 165 RADGAHAGLK--GCGLNIVAEQPANWDRAQGRTVMENILTR--NQKLKAVFASNDNMALG 220 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 AVEALK + + + V G DA P+A + +G + T+ + N + A LA G+ Sbjct: 221 AVEALKDADMLNDVIVVGFDANPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGR 280 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 VV + V K N A+F Sbjct: 281 SLP---------PVVDTGTLLVTKKNAADFK 302 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 63/309 (20%), Positives = 117/309 (37%), Gaps = 30/309 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + G ++ F +++AIE+ D +L++ D+QND KQ ++ LL Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGD-ELIVIDAQNDAQKQISMVEDLLT 121 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +G+ L + +D A+ + +E+ VPVV F+ + L + +D+ +G Sbjct: 122 QGIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDL----VNTIIVSDNYYAGE 177 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + + + K + +L P R + + Sbjct: 178 LVAEDMMKKLPEGS----------KVCILT-SPSAEACIKRQNGFKD---KADGYFKIVS 223 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDA 260 DTA + + L + A ND A+G V+AL++ K+ + V+GVD Sbjct: 224 EIDGKGDTATSLGIAEDVLQ--GNPDLGAFYAINDPSAIGCVQALESQKKTDVLVYGVDG 281 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 P + G + T N K + A + G+ K + VP Sbjct: 282 QPMGKQAISEGTMEATAAQSPINIGKESVAAAYKILSGESV---------EKNILVPTFL 332 Query: 321 VDKDNLAEF 329 +DK+N+ E+ Sbjct: 333 IDKNNVTEY 341 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 106/323 (32%), Gaps = 36/323 (11%) Query: 1 MNKKVLTLSAVMASMLFGA---------------AAHAADTRIGVTIYKYDDNFMSVVRK 45 M ++ A + ++ G A+ IGV++ D+ F V+ Sbjct: 1 MKHRLFIALACLLTVFAGCNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGD 60 Query: 46 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 I + K ++ D +KQ++QI + K V A+ ++ D + VI++A Sbjct: 61 NIVSEGKKR-GYDAVVVSGDKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANA 119 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 +PV + + A + TD+ G + + + Sbjct: 120 AGIPVFTVDIPCHEPGVK---IATQIATDNYGGGKEAAKAMIEALGEAG---------GK 167 Query: 166 FVLLKGEPGHPDAEARTTYVIKEL----NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 +L + + R + + + K + + + Q + L Sbjct: 168 IAILHFKQ-AESCQLRVKGFREIIDAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQA 226 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLND 280 + + A ND A+GA AL+ K+ + + G D PE +K G + + Sbjct: 227 --NPDLHGIFAINDPAALGARAALEKAGKTDQVVIVGFDGQPEGKQAIKEGKIYADPIQF 284 Query: 281 ANNQAKATFDLAKNLADGKGAAD 303 + D + G+ Sbjct: 285 PDKMGAQIVDAIIQQSKGETLPP 307 >UniRef50_B5JEL4 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JEL4_9BACT Length = 359 Score = 227 bits (580), Expect = 4e-58, Method: Composition-based stats. Identities = 66/317 (20%), Positives = 128/317 (40%), Gaps = 22/317 (6%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 +++ IG+++ + V R AK ++ + + +D S Q ++ + Sbjct: 32 SSSPDHKLLIGLSMDTLQEARWQVDRDVFLARAKEL-GAEVSVASANSDDSTQIRDVNSM 90 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 ++ GV + I D A + +A +PV+ +++ LD Y+ D+ + Sbjct: 91 ISAGVDVIVIIPHDGQAMSEGVRQAHQAGIPVIAYDRSIQDSDLDL-----YITFDNVKV 145 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY---VIKELNDKGIK 195 G Q + H + G+ + V + G P +A+ +++ D+G Sbjct: 146 GEAQAQYLIDHLPS--------PGKGRIVRIYGAPTDNNAKMFKQGQDNILQPYIDRGDI 197 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIP 254 + W+ A AK +A ++ N + ++A+ND A GA++ALK S I Sbjct: 198 EVIHEDWAENWEPANAKKITNAAITN-NGSDFHGILASNDGTAGGAIQALKEEGLVSKII 256 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA---DGTNWKIDN 311 V G DA A + G+ T+ A +LA ++A G+ + N Sbjct: 257 VTGQDAEMAACQRIVDGSQIMTIYKPIKALASTAAELAVSMATGQPIIARGEIDNGFKTV 316 Query: 312 KVVRVPYVGVDKDNLAE 328 + +P VDK N+ + Sbjct: 317 PSIFLPITSVDKSNMMQ 333 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 68/318 (21%), Positives = 118/318 (37%), Gaps = 31/318 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 IG++ + + + I+ A P ++ D+ D +KQ ++ Sbjct: 40 CKGADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENY 99 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + + + L I+ + V++KA Q +PV+ +++ A ++G D+ + Sbjct: 100 ITQQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGDA-----YTGFIGGDNVQI 154 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G G +A+ V +KG G R + K + Sbjct: 155 GTEAGKYVAEKV---------LPNGGNVVEIKGLAGATPQAERNQGFATGIK-ANPKVKV 204 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFG 257 + + W + + +MDA L KI+VV A+ND MA GA A KA + + G Sbjct: 205 VATASGDWLREKGQAQMDALLKA--NPKIDVVYAHNDPMAEGAYLAAKAVGREKEMKFIG 262 Query: 258 VDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 +DALP + V+ G L T N K AK L + K Sbjct: 263 IDALPIPSGGIKAVEQGRLTATFTYPTN--GKEAIAAAKKLL--------VDCGTIEKTQ 312 Query: 315 RVPYVGVDKDNLAEFSKK 332 +P +DK N A+ + Sbjct: 313 TLPTRLIDKTNAAQIYAQ 330 >UniRef50_C0QYC4 Galactose/glucose-binding protein n=2 Tax=Brachyspira RepID=C0QYC4_BRAHW Length = 338 Score = 227 bits (579), Expect = 6e-58, Method: Composition-based stats. Identities = 112/312 (35%), Positives = 175/312 (56%), Gaps = 11/312 (3%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALA 87 IGV +Y+YDD++M +++ IE+ + LLM DS N QS QN QID+ L K V LA Sbjct: 27 IGVALYRYDDSYMKFLKQYIEK--NINRNTSLLMVDSYNSQSTQNGQIDMFLQKNVNLLA 84 Query: 88 INLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIA 147 INLVD A V++K N PV+FFN+EP + + +YDK +Y+G S+E+G QG +IA Sbjct: 85 INLVDKTQAQKVLDKISINNKPVIFFNREPGLEVMKTYDKVWYIGGISEEAGYAQGRIIA 144 Query: 148 KHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWD 207 + W WD N+DG+IQ ++LKG+ D RT Y+ K ++ IK + L + M Sbjct: 145 ESWKDRMNWDKNEDGKIQCIILKGDLNDNDTVKRTEYMKKYISSNNIKLDILAEISTMGK 204 Query: 208 TAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-------IPVFGVDA 260 ++ M + + KIE +I NND +A+GA++ALK ++ +P+ G+D Sbjct: 205 RDESTRIMKSLI-LKYGKKIEYIICNNDYIALGALDALKEIGYNNSSRMLNYVPIVGIDG 263 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK-IDNKVVRVPYV 319 +PE L + + + TV+ + QA+ ++ N+ GK DG + + K + +PY+ Sbjct: 264 IPECLEAINNYGIFATVMQNPKIQAETLCSVSSNIIGGKSPLDGLHISYYNEKYIVIPYI 323 Query: 320 GVDKDNLAEFSK 331 + K NL K Sbjct: 324 PITKYNLDTAIK 335 >UniRef50_C2CJZ2 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Anaerococcus RepID=C2CJZ2_9FIRM Length = 362 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 109/311 (35%), Positives = 174/311 (55%), Gaps = 11/311 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + +I V +Y D +++ VR+ +E+ K ++L+ D QN+Q Q DQ++ ++A Sbjct: 52 SDGKAKKIAVLLYNGSDTYIASVRQQLEKLDKDDDSIELVFQDGQNNQGTQTDQLNNIIA 111 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESG 139 +GV + +N+VD +AA T +E + +P FFN++ + + K + ++GTD+ E+G Sbjct: 112 QGVDGIFMNIVDISAAPTAMETIKASGIPTAFFNRDMTESMKEDDLKDFIFIGTDAPEAG 171 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 +QG ++ W D NK+G + +V+L G +P+A+ART + +K L D GIK ++ Sbjct: 172 KMQGQILTDLWKKGD-MDRNKNGVLDYVMLNGGLDNPEAQARTEFSVKTLKDNGIKVNEV 230 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN------KSSI 253 A WDT +AK MD WL N + I+ VIANND MA+GA+ AL+A K ++ Sbjct: 231 AFQDAKWDTDKAKTAMDTWLQT-NQDNIDAVIANNDGMAIGAISALQAVGMNTGSSKDNM 289 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI--DN 311 V GVDA A+A + G ++GTV DA AKA D KN GT++K+ D Sbjct: 290 VVVGVDATDLAVAEIDKGTMSGTVKQDAEGMAKALIDTMKNRLANNDFIKGTDYKLGADK 349 Query: 312 KVVRVPYVGVD 322 K +R+ Y Sbjct: 350 KSIRIDYQIYT 360 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 226 bits (577), Expect = 8e-58, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 123/315 (39%), Gaps = 26/315 (8%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 + G A A+ + V+ F +R+ +E +A V++ + D+QN+ SKQ + Sbjct: 28 MTGCARGGAEAEVVVSFNDLSQPFFVAMRRELEDEAAKL-GVKVQVLDAQNNSSKQISDL 86 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 +G K + + D A + Q V V+ ++ + +VG D+ Sbjct: 87 QAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGK----TAVPHVGADN 142 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 G D + K + A + V++ +PG + R V L G Sbjct: 143 VAGGRAMADWVVKTYPAG----------ARVVVITNDPGSSSSIERVKGVHDGLAAGGPA 192 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS--SI 253 + + TA QA L+ +V++ ND MAMGA+EA++A + Sbjct: 193 FKIVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKV 252 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKV 313 V G DA+PEALA +K+G + TV + Q + A + K Sbjct: 253 KVIGFDAIPEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIK---------SGAALKS 303 Query: 314 VRVPYVGVDKDNLAE 328 V + V + NL E Sbjct: 304 VSLKPVLITSGNLTE 318 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 226 bits (577), Expect = 9e-58, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 33/304 (10%) Query: 28 IGVTIYKYDDNFMSVVRKAIEQDAKAAPD--VQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 +GVT+ + F V+ + E++AK V++ + S D ++Q +QI+ +A Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + IN D +++AR V+ + D V T++ ++G I Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAIEA------DIDATVTTNNVQAGEISCQY 175 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ-LDTA 204 IA G+ V++ G P R +K L K + L A Sbjct: 176 IADRLK----------GKGNVVIVNGPP-VTSVIQRVDGCLKVLA-KYPDIKLLSKDQNA 223 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEA 264 M L KI+ V A ND +G A + + GVD PEA Sbjct: 224 EGSRDGGLRVMSDLLVTF--PKIDAVFAINDPSGVGVDLAANQAKRQDFFIVGVDGAPEA 281 Query: 265 LALVKSGA--LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 + + SG A T + + + ++ GK ++ + +P + Sbjct: 282 IEAIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKKP--------ESPNILIPAKLIT 333 Query: 323 KDNL 326 K+N+ Sbjct: 334 KENV 337 >UniRef50_A6M1Q6 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M1Q6_CLOB8 Length = 353 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 123/350 (35%), Positives = 200/350 (57%), Gaps = 27/350 (7%) Query: 3 KKVLTLSAVMASMLFG-------------AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 KK+L L +M ++ A R V + +D + ++++++ E+ Sbjct: 5 KKILVLFTIMVMIINLLLNSNKVVANTKLTATEGRPVRASVLLRTLEDPYTALLKQSFEE 64 Query: 50 DAKAA-PDVQLLMNDSQNDQSKQNDQIDVLLAKG-VKALAINLVDPAAAGTVIEKARGQN 107 K +++ D +NDQS QN ++ +L G + +NLVDP T++++ + +N Sbjct: 65 IQKNNQGNIEFTFYDCKNDQSLQNRNVNSILNAGNADIILLNLVDPTGVRTIVDRVKEKN 124 Query: 108 VPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDGQIQ 165 +P+ FN EP + + + SY KAY+VGT+ E+GI+QG+L++ W D N D +Q Sbjct: 125 IPLGLFNIEPLNMETVKSYSKAYFVGTNPAEAGILQGELLSSLWNKDRTIIDKNGDNIMQ 184 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 +V+L G + +A RT Y + +ND GIKTE++ L W+ AKD MDA N N Sbjct: 185 YVMLMGPRNNLEAIGRTKYSVLSINDAGIKTEEIALRVCNWEENLAKDAMDALFLS-NGN 243 Query: 226 KIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLN 279 KIEV+I+NNDAMA+GA+EAL+ + +S IP+ GVD +P+A+ L+ G + G+V Sbjct: 244 KIEVIISNNDAMAIGAIEALQKYGYNSGDKNRTIPIVGVDGIPKAIQLINQGIMTGSVPQ 303 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVG-VDKDNL 326 DA + A+AT+ + NL +G+ DGT++K D+ VR+PY G + DN+ Sbjct: 304 DAASMAEATYLIGMNLVNGRPPLDGTSYKFDDTGVAVRIPYKGYISNDNI 353 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 226 bits (576), Expect = 1e-57, Method: Composition-based stats. Identities = 58/324 (17%), Positives = 123/324 (37%), Gaps = 23/324 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQLLM 61 + + +AV+A++ +G A I + + F + I A+ ++ L Sbjct: 2 RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 S+ D Q + LL + +AL + ++ +++A QN+P+V + Sbjct: 62 VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121 Query: 122 L--DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 L + A+ + +D++ +G + + + ++++G G+ Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKLGQGFS--------GKVLVIEGLAGNVTGA 173 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 AR + L + + WD +A + + L + + ND MA+ Sbjct: 174 ARRDGFTERLKQIAPNAQIVATLPGDWDRLKAANITNDTLQRH--PDLAAIYCANDTMAL 231 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GAVEA+ A K + V G D +A+ +++G L +V + + G+ Sbjct: 232 GAVEAVFAAGKK-VLVVGTDGNSDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290 Query: 300 GAADGTNWKIDNKVVRVPYVGVDK 323 + + VP + +DK Sbjct: 291 QV---------DPKIIVPTLVIDK 305 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 79/349 (22%), Positives = 142/349 (40%), Gaps = 34/349 (9%) Query: 1 MNKKVLT----LSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAP 55 M K+ L + ++ + L GA A+A +I + + + + A + A A Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 L + D + D Q++ D + + A+ VD A IE+A+ +PV N Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 S + Y+ ++ E+G + + + + V+L+G G Sbjct: 123 VVS----KTELYDAYINSNDVEAGEMLAKAVIDKAGKD----------AKVVVLEGMLGQ 168 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 R + L + L+ +TA W A+A M+ +L+ ++++ V+A ND Sbjct: 169 SAQVQRLEGINNVLK-QNSGVTILEQNTANWSRAEAITLMENFLTSH-GDQVQGVLAEND 226 Query: 236 AMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 MA+GA+E ++ H +PV GVD + +AL VK G ++L DA+ Q++ DLA Sbjct: 227 EMAVGAIEGIRNHGLDPKKLPVAGVDGIKDALEAVKRGEQTMSILQDASGQSQGAIDLAL 286 Query: 294 NLADGKGAADGTNWKIDNK-----------VVRVPYVGVDKDNLAEFSK 331 + G N VP++ V DN+ + Sbjct: 287 SKLVGDTYKPRAKVWDTNGGKLAWNGGKEEHYYVPWLAVTSDNVDKVLA 335 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 106/338 (31%), Gaps = 35/338 (10%) Query: 3 KKVLTLSAVMASMLFGAAAHAADT---------RIGVTIYKYDDNFMSVVRKAIEQDAKA 53 ++ L +V ++ ADT V F V+ EQ + Sbjct: 110 RRSFCLVSVATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEE 169 Query: 54 APDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 ++ +ND+ +Q + + L V + + +D A +++A VPVV Sbjct: 170 -IGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVV 228 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 F+ + D D YV TD+ E G + G+ +A +LL+ Sbjct: 229 IFDSGLNT---DPGDFVSYVATDNFEGGKLAGEAMANALGEKG---------GDVILLRY 276 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 E G R + + + A T A DK A L+ ++ + + Sbjct: 277 EQGSESTHQREEGFLYSIAEYSNIRVLSSDQYAGTTTESAIDKAQALLNR-FGDEADGIC 335 Query: 232 ANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 + A GA+ AL+ + + D+ + +G + VL D Sbjct: 336 TVCEPTAEGALRALRERKLAGKVKLVTFDSSDSLRESLSAGEVNAIVLQDPVAMGYQAVK 395 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 G+ + + N + Sbjct: 396 TMAAHLRGETP---------EQFIDTGVFVATAKNQDD 424 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 69/346 (19%), Positives = 125/346 (36%), Gaps = 39/346 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR-------------------IGVTIYKYDDNFMS 41 M + + +L + + I + + + F Sbjct: 1 MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60 Query: 42 VVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVI 100 +++ IE++A A V ++ S+ D +Q I+ LL+KG KA+ I + P I Sbjct: 61 EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120 Query: 101 EKARGQNVPVVFFNKEPSRKALD--SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDL 158 +A + + VV +++ + L +V TD+ + G + I Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEG----- 175 Query: 159 NKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW 218 + +++G+ G+ E R + K + + A WD ++A D Sbjct: 176 -----GEVAIIEGKSGNASGEFRRQGATEAFK-ADSKFKLVASQPADWDRSKALDVAANL 229 Query: 219 LSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTV 277 + ++ + A ND MA+GAV+A+ K I V G D PEA + G L TV Sbjct: 230 IQKY--PNLKAIYACNDTMALGAVQAVANAGKTGQILVVGTDGAPEARTSIDEGKLNATV 287 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDK 323 D + + K + I+ K V V + K Sbjct: 288 AQDPAMIGATSLKILIEAIKDKP---QISPDIEAKEVPVESNLISK 330 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 128/311 (41%), Gaps = 31/311 (9%) Query: 4 KVLTLSAVMASMLFGAAAHA-----------ADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 +++ + V A+M+ GA A IG+ + +F + +++++ +AK Sbjct: 8 RIVIATGVAATMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAK 67 Query: 53 AAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 ++++++D++ D + Q +QI +++ V A+ AAG ++ A +PVV Sbjct: 68 KK-GIKVIVSDARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVT 126 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 ++ P + ++ +DS + G+ + K G+ Q +L+G+ Sbjct: 127 VDRNPPGEPGK-----SFIASDSVAAARTLGNYVVKESG----------GKGQLAILQGQ 171 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA 232 G R + L + + + A W +A L I+++ Sbjct: 172 IGTTPQVDRQKGFGQALKNA-PGIKVVSQQPADWAQDKAYSVSQDMLQAHPG--IDILWG 228 Query: 233 NNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 DAMA+GA +A+KA K + G D L V+ G + T++ + + + Sbjct: 229 QADAMALGAAQAVKASGSKKKHLIVGFDGDIAGLKAVRRGTVDATMVQQTRKMGRMSVNT 288 Query: 292 AKNLADGKGAA 302 A ++ GK Sbjct: 289 AVDIIKGKKVP 299 >UniRef50_A6TRZ6 Monosaccharide-transporting ATPase n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TRZ6_ALKMQ Length = 353 Score = 225 bits (575), Expect = 2e-57, Method: Composition-based stats. Identities = 70/358 (19%), Positives = 146/358 (40%), Gaps = 45/358 (12%) Query: 1 MN-KKVLTLSAVMASMLFGAAAHA--------------------ADTRIGVTIYKYDDNF 39 M KK+L+ +M ++ A A R+G+++ + Sbjct: 1 MKSKKILSFLLMMVMVVTLLAGCGGQQETAEETAGEETVVEEPEAKIRVGLSLPTQREER 60 Query: 40 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 ++ +E A ++L++ S + +Q Q++ LL +G+ L + D +AA ++ Sbjct: 61 WVRDKERMEAYAAE-VGIELIVRVSDANIQEQITQVEALLNQGIDVLILAPHDASAAASL 119 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 +E+A + VPV+ +++ + ++ Y+ D+ + G +QG I + Sbjct: 120 VEQANREGVPVISYDRLIT----NTDKLDIYLSFDNVKVGELQGKYITEQVPE------- 168 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVI---KELNDKGIKTEQLQLDTAMWDTAQAKDKMD 216 +++++ G P +A + + L D G + W A ++ Sbjct: 169 ----GRYIIMSGAPTDNNATLFKQGAMSYIQPLIDAGKIEVIAEQAVDNWVPENALRIVE 224 Query: 217 AWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAG 275 A LS + +++ ++A ND A A++AL A +P+ G DA A + G + Sbjct: 225 AALSANDN-QVDAILAPNDGTAGAAIQALTAQGLAGQVPITGQDAEVSAAKRIVDGTQSM 283 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADG---TNWKIDNKVVRVPYVGVDKDNLAEFS 330 T+ D + ++A LA+G+ + N + + V + V DN+ E Sbjct: 284 TIFKDTRLLGEEAINIAIKLANGESISTNGEVDNGRFNVPSVLLEPQVVTADNIRELL 341 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 66/330 (20%), Positives = 133/330 (40%), Gaps = 28/330 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAH--AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M KK S + A++L A+ A++ I + +D+ F + + AK Sbjct: 1 MKKKTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKEL-GYD 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D +KQN I+ +A+ KA+ ++ D A+ +E+ + +P +++E + Sbjct: 60 TLVASHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 + + + +++ + + G+ A+ ++V L G +A Sbjct: 120 KTGI----AVTQIVSNNFQGAQLAGEKFAELMGDG----------GEYVELLGPESDTNA 165 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 + R+ L D + + + +A W +A +M++ L I+ VI ND+MA Sbjct: 166 QVRSEGFHDIL-DNFPEFKMVARQSANWSQTEAFSRMESILQA--NPNIKGVITGNDSMA 222 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSG-ALAGTVLNDANNQAKATFDLAKNLAD 297 +GA AL+A + + + G D L + G + T++ A QA+ + A Sbjct: 223 LGAEAALQAAGRKDVFIVGFDGLDYVRDSIIKGSNIKATIMQPAYAQAQRVAEQADLYIR 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 T + + V +D N Sbjct: 283 -------TGSTGLPEKQLMDCVLIDSSNAK 305 >UniRef50_C4G468 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G468_ABIDE Length = 350 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 174/344 (50%), Gaps = 21/344 (6%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA------------ADTRIGVTIYKYDDNFMSVVRKAIE 48 M KK++ ++ A RIGV++Y+++D F+S ++K +E Sbjct: 1 MKKKIIPAFLTGIVIIAAIFAFIIFSKSKEGLTDRQTIRIGVSLYRFNDTFISSIKKEME 60 Query: 49 QDAK---AAPDVQL--LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 K ++L + D+ Q QN Q+D ++ + IN V+ A A +I+KA Sbjct: 61 NYVKYYEKGNGIKLNMEIVDAGGSQLTQNKQVDRFISLNYDVICINPVERADASVIIDKA 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDG 162 ++PVVFFN+EP + DK YVG KES I++G ++ + + DL+ DG Sbjct: 121 LAADIPVVFFNREPVEDDMKRSDKFCYVGAPPKESAILEGKILVDAYKKDSSVLDLDGDG 180 Query: 163 QIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGP 222 ++ ++LL+GE H D+ RT + +K L D G+ ++L D A WD QA M+ W+ Sbjct: 181 EVSYILLEGEASHQDSIVRTEWSVKTLKDGGVPIKKLAGDIANWDRNQAAALMEGWVKKY 240 Query: 223 NANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDA 281 ++IE+V++NND MA+GA++ +K ++ + GVDA AL +K G L G+V +D Sbjct: 241 -GDEIELVLSNNDDMALGAIDIIKNEKSLKNVKIVGVDATAPALEAIKKGELFGSVSSDK 299 Query: 282 NNQAKATFDLAKNLADGKGAADGTNWK-IDNKVVRVPYVGVDKD 324 A+A + A A G+ K ++ K V V + Sbjct: 300 PEYARAIIEFAIAKATGRELPKDIKDKAVNGKYYNVSQYIVTVE 343 >UniRef50_A6LYW8 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LYW8_CLOB8 Length = 350 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 96/306 (31%), Positives = 175/306 (57%), Gaps = 11/306 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLL 79 + + V +Y +DD ++S++R+ +E+ K ++ D +NDQS QN ID L+ Sbjct: 36 SKDRPINVAVLLYSFDDIYISLIRQNLEEIQKENEGKIKFTFYDGKNDQSVQNSSIDELI 95 Query: 80 AK-GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR-KALDSYDKAYYVGTDSKE 137 K GV +NLV + V+EK + N+P++ F++EP+ +++ SY+K YVGT +E Sbjct: 96 KKRGVDLFLVNLVTTHSTQEVVEKVKRVNIPIILFSREPAAIESIKSYNKCCYVGTRVEE 155 Query: 138 SGIIQGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 +G++QG+++ W + D NKD +Q+++L G+ + ++ T Y I ++N+ IKT Sbjct: 156 AGLLQGEIVTNLWNEKKSFIDKNKDNVLQYIMLMGQENNLESVKETEYPILKVNNSKIKT 215 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS---- 252 ++L + W+ +AK+ + A N++E + ANND MA+GA++AL+ + + Sbjct: 216 QELAVRACNWNEDEAKEVIKALFLQH-GNRVEAIFANNDPMAIGAIKALQEYGYNKGENT 274 Query: 253 --IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKID 310 IPV G++A+PEA L+ +G + G+V D + AK +++ N + GTN++ D Sbjct: 275 PTIPVVGIEAIPEARELIDAGMMTGSVFQDPSEVAKVLYNVGMNYVYNRNPLYGTNYEFD 334 Query: 311 NKVVRV 316 + V Sbjct: 335 ETGISV 340 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 90/358 (25%), Positives = 140/358 (39%), Gaps = 44/358 (12%) Query: 1 MNK----KVLTLSAVMASML----FGAAAHAAD-----------------TRIGVTIYKY 35 M K L ++ +M +ML G + +IG + Sbjct: 1 MKKINNLHKLLMTVLMIAMLAFAFTGCTSGPQKEEKTESKSNNDKSSLEGLKIGFCVTNR 60 Query: 36 DDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA 95 D ++ I ++ + ++L + D++ D S Q Q+ + G L IN VD + Sbjct: 61 DQ--FQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLLMINCVDAES 118 Query: 96 AGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG 155 +I A VP VFFN+ PS ++ + YYVG + G G +A+ N Sbjct: 119 IQEIINAAGD--VPCVFFNRMPSDHSVFDEN-HYYVGMSDYDCGYDMGKFMAEWLKDNNK 175 Query: 156 WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKM 215 D VL G G + +RT + K L D G K + DTA WD ++A DK Sbjct: 176 TDTADG-----VLFLGPLGATNTVSRTDGIKKGLADSGYKVNWVFEDTAEWDRSKAMDKF 230 Query: 216 DAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALPEALALVKSGA 272 ++ K + + ANND MA+G +EAL A S P+ G+DA L V G Sbjct: 231 TQFMGS--GKKFDFIAANNDDMALGCIEALTAAGYSAPFDFPIAGIDATENGLLAVGDGT 288 Query: 273 LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 L T + F++A + + D + V DN+ +F Sbjct: 289 LTATFDQSPSKMTNYCFEIAFAILQDTDMPEEVK---DFTWIY-KAEMVTADNVDDFK 342 >UniRef50_A6M1U1 Periplasmic binding protein/LacI transcriptional regulator n=44 Tax=Bacteria RepID=A6M1U1_CLOB8 Length = 335 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 65/295 (22%), Positives = 123/295 (41%), Gaps = 16/295 (5%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 AA ++ IG + + + +I+ P+ L +D Q Q Q I Sbjct: 36 TSAANSSSKKIIGFAQVGAESGWRTAETDSIKSIPTLDPNFDLKFSDGQQKQENQIKAIR 95 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 +A+ V +A++ V TV+++A+ +PVV +++ + D ++G+D Sbjct: 96 SFIAQKVDLIALDPVVETGWDTVLKEAKDAKIPVVIVDRKVTVS--DDSLYKCFLGSDMV 153 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 G ++ + KD + L+G G R + D Sbjct: 154 AEGKKAAQILIDQFG--------KDATLNIAELQGTVGSTAMVGRQQGFNDAIKD-CPNY 204 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSI 253 + ++ T + A+ K+ M+A+L + +KI V+ ++ND MAMGA++A++ + K I Sbjct: 205 KIIKSQTGDFTRAKGKEVMEAFLKS-DGDKINVLWSHNDDMAMGAIQAIEEYGKKPGKDI 263 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 + VD + + + G TV + ++AKN+ DGK N K Sbjct: 264 FIVSVDGIKDIFQAMVDGKANATVECNP-LLGPQLLEVAKNILDGKEVERTINSK 317 >UniRef50_A6M0B9 D-galactose-binding periplasmic protein n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0B9_CLOB8 Length = 348 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 114/338 (33%), Positives = 182/338 (53%), Gaps = 23/338 (6%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIG-------------VTIYKYDDNFMSVVRKAI 47 ++K++L + ++ + + I V +Y + D ++S+V + + Sbjct: 3 ISKRILAILEIIFIVAAMEVSVCDARVIAGTNGLSQRSVMIDVVLYNFKDKYVSLVMENL 62 Query: 48 EQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 E+ K V D + +QS Q++ + L++ L +NLVD A VI + + + Sbjct: 63 EEIQKQNEGKVVFRFYDGKGNQSTQDEVLSNLVSDNADILMVNLVDTRATQDVINRFKSK 122 Query: 107 NVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQI 164 N+P++FFN+EP S AL Y KAYYVGT++KE+G +QG +I W N+ D N +G + Sbjct: 123 NIPIIFFNREPVSVDALRYYGKAYYVGTNAKEAGEMQGKIIVDIWNKNREFIDKNNNGIL 182 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+L+GE G +A R+ I +N GIKTEQL L A W AK + + L Sbjct: 183 QYVMLEGEHGSIEARERSESSIGTINKAGIKTEQLALKAADWQRDLAKTNISSLL-LQYG 241 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNK------SSIPVFGVDALPEALALVKSGALAGTVL 278 IE +IANND MA+GAVEAL+ + +I V G+DA EA L+K G +AG+V+ Sbjct: 242 KNIEAIIANNDEMAIGAVEALQNNGYNLGDKNKTIVVVGIDATAEAQELIKKGFMAGSVM 301 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 D A+A++ + N+ +G+ GT +K D+ V + Sbjct: 302 QDPYEMAEASYAIGMNVFEGRDPLYGTKYKFDDTKVAI 339 >UniRef50_A0LXA2 Sensor protein n=1 Tax=Gramella forsetii KT0803 RepID=A0LXA2_GRAFK Length = 907 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 71/332 (21%), Positives = 133/332 (40%), Gaps = 36/332 (10%) Query: 3 KKVLTLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 K + L V S+L + + ++G + DN+ + K+++ +A PD+ L Sbjct: 2 KYLKLLLFVFLSILTDSCQVKSEEEKFKVGFSQAMTTDNWRREMNKSMKLEASMHPDIIL 61 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + D++N + Q I+ + GV L ++ + IEKA +P + +++ Sbjct: 62 EIKDAENHITNQVAHIEEFIKDGVDVLIVSPIQSIPITPAIEKAMAAGIPTIIIDRKIEG 121 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + YVG ++ E G I H G+ + + G+ G A Sbjct: 122 Q-----NFTAYVGANNIEIGRNAAKYILSH----------SSGKADIIEITGQEGSSPAY 166 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R+ K L D + + + W+ + K+ L A + + A+ND MA+ Sbjct: 167 ERSMGFKKTL-DSVPELKVRHVIKGDWEKTSIQSKLSDLLDSVKAP--DYIFAHNDRMAL 223 Query: 240 GAVEALKAHNK-SSIPVFGVDAL---PEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 GA E ++ + I + GVD + + LVK L T+L T LA+++ Sbjct: 224 GAWEVARSKSLEEEINIIGVDGVFGPNGGIQLVKDNILNATILYPTGGM--ETIKLAEDI 281 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 +G+ NK + V +D N+ Sbjct: 282 LNGENV---------NKNNILRTVIIDSVNVD 304 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 77/328 (23%), Positives = 134/328 (40%), Gaps = 28/328 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 KK+ L+A MA + A A + +I + F +++ + AK V L + Sbjct: 2 KKITILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKEL-GVNLQVL 60 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 DSQ KQ ++ + +G + ++ D A + + + +PVV ++ ++ Sbjct: 61 DSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDR-----SV 115 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 + K + G ++ + G GD + + VLL G+PG RT Sbjct: 116 KTDKKVPHFGANNYKGGQAIGDFVKARFPNG----------ADIVLLTGQPGSSSNIERT 165 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + L G K + T W ++ +++ L + +V+++ ND MA+GA+ Sbjct: 166 QGIRDSLKAGGSKYRLVADQTGNWMRSEGMRIVESVLPSLP-KRPQVILSANDDMALGAI 224 Query: 243 EALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 EAL++ + V G DA+PEALA V+ G LA T N K Sbjct: 225 EALQSQGLKPGEVMVTGFDAVPEALARVRDGWLAATADQRPGYAVTQAMTQLTNNIRTKS 284 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAE 328 A G ++ P + KDNL + Sbjct: 285 AITGADY---------PPTMITKDNLND 303 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 131/333 (39%), Gaps = 31/333 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKA-APDVQL 59 M K++L SA++ + GAA +GV++ + + + ++ E AK PDV++ Sbjct: 23 MIKQLLMGSAILVLAM-GAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKV 81 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + DS D +KQ +QID +A GV + + DP A I++A+ + V+ + Sbjct: 82 ITVDSNYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATD----- 136 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + V T++ ++G I I A G ++++ P Sbjct: 137 --VAAVGADATVQTNNVQAGEIACQYIVDKLGAAGGQ----------IIIQNGPQISSII 184 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R + K L + T + M L+ KI+ V D A Sbjct: 185 DRVSGCRKSLANNPKITILSDDQNGKCSRDEGMKIMQGHLTRHR--KIDAVFTVCDPQAT 242 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSG--ALAGTVLNDANNQAKATFDLAKNLAD 297 G+ A + ++ + VD P+ K G + + D A+ + + + Sbjct: 243 GSDLAAQQFGRNEFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMN 302 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 GK DN ++ +P + KDN+A++ Sbjct: 303 GKKP--------DNPMILMPSTLLTKDNVADYK 327 >UniRef50_C9Y333 D-xylose-binding periplasmic protein n=20 Tax=Proteobacteria RepID=C9Y333_CROTZ Length = 343 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 130/335 (38%), Gaps = 25/335 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L L+ + +L + A D +IG+ I R A++ ++ Sbjct: 14 MKIKQLILTLCASLVLTSFSGIAKDVKIGMAIDDLRLERWQKDRDIFVSKAESL-GAKVF 72 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + ++ Q QI+ ++ +GV L I + V+ +A+ + + V+ +++ + Sbjct: 73 VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVAEAKREGIKVLAYDRMINNA 132 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 +D +Y+ D+++ G IQ + Q + L+ G P +A Sbjct: 133 DID-----FYISFDNEKVGEIQAQSLVDKVP-----------QGNYFLMGGSPVDNNARL 176 Query: 181 RTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 V+K D G W A M+ L+ N NKI+ V+A+NDA Sbjct: 177 FRDGQMKVLKPFVDSGKIKVVGDQWVDGWLPENALKIMENALTA-NNNKIDAVVASNDAT 235 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A GA++AL A + + G DA + + +G TV A ++A L Sbjct: 236 AGGAIQALSAQGLAGKVAISGQDADLAGIKRIMAGTQTMTVYKPITQLANTAAEVAVELG 295 Query: 297 DGKGAADGTNWKIDNKVV---RVPYVGVDKDNLAE 328 + K K V + + VDK N+ Sbjct: 296 NDKQPKSDATLNNGLKEVPSRLLTPIKVDKSNIES 330 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 90/348 (25%), Positives = 141/348 (40%), Gaps = 39/348 (11%) Query: 1 MNKKVLTLSAVMASMLFG--------------AAAHAADTRIGVTIYKYDDNFMSVVRKA 46 M K + + ++ M G A A +IGV I + VR+ Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGP-VGYFVAVREG 59 Query: 47 IEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 I++ A +V++ +D+ D SKQ Q++ L++K V +AI VD AA T + A Sbjct: 60 IDKAAAEN-NVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEA 118 Query: 107 NVPVVFFNKEPSRKALDSYDK-AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 N+P++ F K Y+ YVG + E+G + G+L + Sbjct: 119 NIPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKG---------GK 169 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 VL++G PG R V++ L D E + T+ W+ QA ++ + Sbjct: 170 VVLIEGRPGTSPQINRRKGVMEAL-DTNKNFEVVYTQTSNWEKEQALKIVEDLIQ--KNQ 226 Query: 226 KIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 I+V+IA +D A+GA ALK N I V G+ E L VKSG + GT A + Sbjct: 227 TIDVIIAQDDNSAIGAGMALKEANLKDKILVIGLGGSTEGLNAVKSGLIDGTTYMSAVEE 286 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A +G+ T K V+K N+ F + Sbjct: 287 GYTAITAAVKYLNGEKVEPVTQMKQVE---------VNKSNVESFKGE 325 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 125/334 (37%), Gaps = 35/334 (10%) Query: 6 LTLSAVMASMLFGAA-------AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 L A+ + A A ++G + ++ + K+ + A Q Sbjct: 24 LLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKC-GWQ 82 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+M D+ + SKQ I ++A+ V L + V+ +A+ +PV+ +++ Sbjct: 83 LVMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVD 142 Query: 119 RKALDSY-DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + D ++G+D + G D + K G+ + + L+G G Sbjct: 143 QSVAKAGRDYITFIGSDFIDQGHRAADWLVKATG----------GKAKIIELEGTTGASA 192 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A R E+ K + + + + + M+ L + V A+ND M Sbjct: 193 ANDRKKGF-DEIIAKNPGMTIIASQSGDFARDKGRQVMETLLQAH--PDVTAVYAHNDEM 249 Query: 238 AMGAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 A+GA+ A+KA K I + +D + + +G L +V + D+A+ Sbjct: 250 ALGAIAAIKAAGKQPGKDIQIVTIDGTKGGMDAIAAGELGASV-QSSPFFGPLACDVAQR 308 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 A G+ V+V DK N+ + Sbjct: 309 YAKGEKIP---------TWVKVSDKFYDKSNVQQ 333 >UniRef50_A6LHB1 Sensor protein n=4 Tax=Bacteroidales RepID=A6LHB1_PARD8 Length = 887 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 60/310 (19%), Positives = 117/310 (37%), Gaps = 31/310 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR--IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 M L + + +L G + + IG++ DD + + + +A DV+ Sbjct: 1 MKHPFLLVWLTLI-VLCGCTSSGKQKKHVIGLSQCMLDDAWRQAMINDMRIEASNYDDVE 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 +++ D+QN+ Q QI L+ + V L I+ V E+A +P + +++ Sbjct: 60 IIIKDAQNNNETQIQQIRDLIRQKVDVLIISPYQSEPITAVAEEAYRAGIPTIITDRKV- 118 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++ +VG ++ E G+ G+ A + N + + G A Sbjct: 119 ----NTDQYTSFVGANNYEIGLAAGNYAANYLPPNAI----------ILEIWGLTQTSPA 164 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK-IEVVIANNDAM 237 + R + L ++ + W A+ M+ L + I+ V A+ND M Sbjct: 165 QERHKGFVDALRERED--LSFRKIEGQWLVDTAR--ME--LRKLEHPEQIDFVYAHNDMM 218 Query: 238 AMGAVE---ALKAHNKSSIPVFGVDALP-EALALVKSGALAGTVLNDANNQAKATFDLAK 293 A+ A E A + + + GVDA+ L V+ G + + L + A Sbjct: 219 AIAAREYFMAWDSIRGRELRIIGVDAVAGAGLEAVEDGRINASFLYPTG--GEQVIRTAM 276 Query: 294 NLADGKGAAD 303 + G+ Sbjct: 277 RIIQGEPVDK 286 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 223 bits (570), Expect = 5e-57, Method: Composition-based stats. Identities = 63/312 (20%), Positives = 111/312 (35%), Gaps = 35/312 (11%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 + IGV+ +D + + A +V+L + + +Q QID L Sbjct: 18 CSQGGKRYTIGVSQCS-EDIWREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSL 76 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 + +G+ L + I++A + +PV+ F ++ S ++ D+ E Sbjct: 77 MNEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTG-----SQKYTAFISADNYEM 131 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQ 198 G + G+ I G+ + +KG G A R + + D+ + Sbjct: 132 GHVMGEYIVSRLH----------GKGNVLEIKGLAGSSPAIERHNGFMDAIKDE-PGIKV 180 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGV 258 + W A A K WL+ +++V ND AMGA EAL G+ Sbjct: 181 VGSLQGDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREALGE----KPLYCGI 236 Query: 259 DALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 D LP + LV+ L + + + DLA + +G+ K Sbjct: 237 DGLPGKNGGIQLVRDSLLDASFIYPTH--GDQLMDLAIRILEGQPY---------EKETM 285 Query: 316 VPYVGVDKDNLA 327 + V DN Sbjct: 286 LMSALVTHDNAK 297 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 64/348 (18%), Positives = 137/348 (39%), Gaps = 41/348 (11%) Query: 1 MNK-----KVLTLSAVMASMLFGAAAHAAD------------TRIGVTIYKYDDNFMSVV 43 M + + + + + ++L G A + +GV+ + + + Sbjct: 1 MKRKNKIFRKVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTAN 60 Query: 44 RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 +++++ L+ +++ Q Q + +++ V + + + TV+ +A Sbjct: 61 TRSVKETLTKENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREA 120 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ 163 R +PV+ +++ + K D +VG+D E G G + + D Q Sbjct: 121 REAEIPVILMDRKINVK--DESLYTAWVGSDFVEEGRNAGKWLEDYLKGQ----RFNDDQ 174 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 + V+L+G G RT + + K L+ A + TA+ +++M L+ Sbjct: 175 VNIVVLQGTAGTTAMFGRTQGFEE-IAAKHENWNILEQTNADFTTAKGEEEMRRLLNTY- 232 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNK-----SSIPVFGVDALPEALALVKSGALAGTVL 278 +I+V+++ ND M GA+EA+++ + I V D +AL VK+GA+ V Sbjct: 233 -PEIDVLVSQNDDMTFGALEAIQSAGRTTGTGGDITVISFDGTKKALEKVKTGAINVDVE 291 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 + Q K ++ + L G+ V + N+ Sbjct: 292 CNPY-QGKYIEEIIQALETGQSIEKDN---------YVEEKVFTQKNV 329 >UniRef50_A6LRZ3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LRZ3_CLOB8 Length = 349 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 176/344 (51%), Gaps = 24/344 (6%) Query: 3 KKVLTLSAVMASMLF----------GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 KK+++ ++A + ++ ++ +DD ++S+VR ++E+ Sbjct: 5 KKIVSFIIILAIIPTYNLKTALYANAQVIPKKPVKVATLLFAFDDPYISLVRNSLEEIQN 64 Query: 53 AAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV--DPAAAGTVIEKARGQNVP 109 D V D + +Q QN +D L L INLV D +VI KA+ +N+P Sbjct: 65 KNKDSVSFTFLDGRRNQGIQNALLDSALQSDYDLLLINLVSLDKNTVESVIRKAKQRNIP 124 Query: 110 VVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWA-ANQGWDLNKDGQIQFV 167 V+ FN P + + SY++A V T++ +SGI+QG+LI K W + D N D +Q+ Sbjct: 125 VILFNTVPFDTEPIKSYNRALVVSTNADQSGILQGNLIVKEWNSDKKTMDRNGDNVLQYF 184 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +LKG AR+TY I +ND GI+T+++ WD AKD + L +KI Sbjct: 185 MLKGPNNSTVTNARSTYSISTINDAGIRTQEILSKFCYWDEICAKDSTE-LLFLRYGDKI 243 Query: 228 EVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDA 281 E +I+NNDAMA+GA+EAL+ + + IPVFG+D +P A L+ G + GTV D Sbjct: 244 EAIISNNDAMAIGAIEALQKYGYNKEDKSKYIPVFGIDGIPAAKDLINKGVMTGTVFQDP 303 Query: 282 NNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVDK 323 N A+A + + NL K + TN+K D +++PY Sbjct: 304 NQTAEALYSIGMNLVANKNPLENTNYKFDETGVTIQMPYQEYTP 347 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 64/334 (19%), Positives = 135/334 (40%), Gaps = 37/334 (11%) Query: 3 KKVLTLSAVMASMLFGAA---AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK---AAPD 56 KKVL L ++ G + + +T +G+ + +M + + E AK Sbjct: 2 KKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDGT 61 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 + + + ++ S Q + ++ L+A+GV A+ + ++ A + + +P+V ++E Sbjct: 62 IDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDRE 121 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + A V D+ +G+ G+ + G + V + G P + Sbjct: 122 LTNDAA-----TVVVKGDNYGAGVNAGEYFMEQLG----------GNGKVVEIAG-PSNS 165 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 + R+ + + G E + + + T + M+ L+ +I+ V +D Sbjct: 166 VTQQRSDGFREAIE--GSDIEIVASQSGEFSTETSLQVMENILTSQ--PEIDAVYTQDDG 221 Query: 237 MAMGAVEALKAHNKSSI-PVFGVDALPEALALVK-SGALAGTVLNDANNQAKATFDLAKN 294 MA+G ++A+ N++ I + GV + ++ G + T L K + + Sbjct: 222 MALGVLQAINEANRTDIQFITGVAGSKDVYEIIMDDGLITATFLYSP-LMVKEGVIIGAD 280 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 LA+G+ D+ V VP V KDN+ + Sbjct: 281 LANGEDP--------DSAEVVVPATPVTKDNVDD 306 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 70/308 (22%), Positives = 124/308 (40%), Gaps = 30/308 (9%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 + G T ++ F V+ K+I + + D QL+ D D SKQ DQI+ ++ +G Sbjct: 38 KKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGD-QLITMDPAMDVSKQIDQINDMITQG 96 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 V+A+ +N VD +E + N+P++ F+ E D YVG+D+K +G + Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVK----DMNYVTAYVGSDNKNAGKVC 152 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 GD + K + + +L P R + G + Sbjct: 153 GDDLVKRYPNG----------GKIAILNC-PTMNSINDRIAGFKSAIE--GKNFTIVAEQ 199 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 D + D L + I ++ ND A+GA+ A K+ +S I ++GVD P Sbjct: 200 DGKGDLQTSMKLADDILQSHS--DIVAIMGGNDPTALGALAACKSAKQSKILIYGVDGSP 257 Query: 263 EALALVKS-GALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 +A + S G GT + +L + + + K V + Sbjct: 258 DAKKEIASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNV---------EKKTPVQTFLI 308 Query: 322 DKDNLAEF 329 +KDN++++ Sbjct: 309 NKDNVSKY 316 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 125/329 (37%), Gaps = 23/329 (6%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + LS S A I V+ Y +++ +E +AK +V+++ Sbjct: 8 MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 +D Q KQ I+ + +GV + I D A V+ A + + VV ++ + Sbjct: 68 RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPVNGV 127 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + V D+ QG+ + K + + L+G PG A Sbjct: 128 P----EVIANVAADNLIGAQRQGEAVEKLFPQG----------ATIINLQGIPGDKTAND 173 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ V L+ + + TA ++ Q + L+G V++A ND A+G Sbjct: 174 RSKGVHDTLDKHPELYKFVAEQTARFNRDQGLSVTENLLTGLANPP-TVIVAGNDDSALG 232 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A +A++A K I +FG D +AL V+ G L GTV Q + + + Sbjct: 233 AAQAVEARGLKGKIAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIR-- 290 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 T + V V V + NL + Sbjct: 291 -----TGARPATVDVLVSPVAITSKNLND 314 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 137/329 (41%), Gaps = 28/329 (8%) Query: 6 LTLSAVMASM-LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 LTL+ S + A IGV + D ++ + A+++ A V+L + DS Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEK-GVKLNITDS 77 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + D + +Q++ LL + V A+ + +D A+ ++ N+P+ + E + + Sbjct: 78 KKDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEFAEGSDVG 137 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 Y Y+G D +G +Q + + K V G G + R Sbjct: 138 YK--SYIGVDDTVAGQMQAEYLNKLMPNG----------GNLVFAAGVYGASWTDRRKNG 185 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 K +N+ + + A AK M+ L + +I+ V+ANND MA+GA A Sbjct: 186 FDKTINE---NFKIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASA 242 Query: 245 LKAHNKSSIP--VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 + +++ V GVD AL ++ G ++ TV D+ Q ++ + +G Sbjct: 243 IADAGRTAEFKAVVGVDGTEPALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNV- 301 Query: 303 DGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + +P+ + KDNL+EF K Sbjct: 302 --------DNRYTLPFTLITKDNLSEFLK 322 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 223 bits (569), Expect = 8e-57, Method: Composition-based stats. Identities = 67/362 (18%), Positives = 135/362 (37%), Gaps = 51/362 (14%) Query: 1 MNKKV-LTLSAVMASMLFGAAAH----------------------------AADTRIGVT 31 M KK+ L L+ V+A L IGV Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 32 IYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 91 + S + + + + +V+L + D+Q+D + Q +QI +A+G + + V Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEEL-NVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPV 119 Query: 92 DPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKA--YYVGTDSKESGIIQGDLIAKH 149 + + + +P++ +++ S +VG D E G QG+L+ + Sbjct: 120 QLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQL 179 Query: 150 WAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTA 209 + L++G G R + + L++ E + + D + Sbjct: 180 LGD----------EGSIALIQGTLGASSQVLRQQGLEEYLSENAPGIEIVAAQNSDQDQS 229 Query: 210 QAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIP--VFGVDALPEALAL 267 QA +L+ +I+ ++A + A+GAV+A+K+ ++ + V G D E L Sbjct: 230 QAITVTQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDS 289 Query: 268 VKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 +K+ + G+ L + T +A +G+ N +P V + +N Sbjct: 290 IKAKDMYGSTLQAPYDMGALTLQVAYQCLT-----EGSEEIEANTYTEIPVVYI--ENAR 342 Query: 328 EF 329 E+ Sbjct: 343 EY 344 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 128/340 (37%), Gaps = 28/340 (8%) Query: 1 MNKKV---LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M +++ L S +A L A IG ++ +D ++ K E+ A A Sbjct: 6 MGRRIVLGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEA-GC 64 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +++ D ++D S Q ID +A+GV + + ++K +P+V ++ Sbjct: 65 KVIFADGKDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRM 124 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 V D +SG I G+ K G+ V+++G PG Sbjct: 125 QTHG-QPIKWEALVSWDMVKSGTIGGEQTVKAIG----------GKGNIVVVEGTPGAGS 173 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R + + +K + L A ++ A+ ++ + L +I+ + D M Sbjct: 174 TIDRGNAFYEVI-EKYPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEM 232 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 G ++A+KA + + VD EA+ L+++ + + ++QA + ++ Sbjct: 233 TFGGLQAIKAAGRLGEFKIISVDGQKEAMDLLRAREIDYEAIFHPDDQA-VAVRILCDIV 291 Query: 297 DGKGAADGTNWKIDNKVVRVPYV----------GVDKDNL 326 +G+ K+ V + VDK N Sbjct: 292 NGRTPDLANQTYEGRKMDLVEFEGMPWVRPTVYAVDKSNA 331 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 121/334 (36%), Gaps = 43/334 (12%) Query: 1 MNKKV-LTLSAVMASMLFGAAA-HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 MNK L+ + M+ + ++ IGV+ +D + + + ++ V Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCS-EDIWRDKLNQELQTATYMEDGVT 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 + + ++ +Q QI+ + GV L I+ A V++KA + +PV+ F+++ Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 ++G D+ E G GD +A+ D + L G G A Sbjct: 120 G------KYTAFIGADNVEVGRQMGDYVARQL----------DYHGNVIELMGLKGSSPA 163 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK---IEVVIANND 235 R I+ ++ + + ++ W A + + A+ I V A ND Sbjct: 164 IERHRGFIERIS-RYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQND 222 Query: 236 AMAMGAVEALKAHNK--SSIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFD 290 MAMGA + S GVDALP + LV L+ + + Sbjct: 223 RMAMGA----REAGLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR--GDLVMK 276 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKD 324 LA N+ + + K + V D Sbjct: 277 LAMNILN---------HRPYQKENLLQSALVTPD 301 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 62/326 (19%), Positives = 118/326 (36%), Gaps = 29/326 (8%) Query: 7 TLSAVMASMLF-GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP---DVQLLMN 62 L+ + + A +IG+ + + F ++ E+ A+ D Sbjct: 33 LLAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGI 92 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 + + D + Q + L+ + + + D A + KA + V+ + Sbjct: 93 NDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATK 152 Query: 123 DSYDKA-YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 + + G D++ + G+++AK A + +L+G P +A R Sbjct: 153 KAAGIDLAFFGPDNRAGAKMSGEVLAKALGAG----------GKVAVLEGNPEADNAVQR 202 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + D + + W+T++ + AWL ++ ++ ND+MA GA Sbjct: 203 RLGFDDAIADGSLNLVVAES--GHWETSEGQSITAAWLKKY--PDLQGIMCANDSMAFGA 258 Query: 242 VEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 V+AL+A N I V G D +P L+K G + TV A D G+ Sbjct: 259 VQALEAANLLDKIKVVGFDNIPAVQPLIKDGKMLATVEQYGAQMAAIGMDYGYRTLKGEK 318 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNL 326 + +R + KDNL Sbjct: 319 F---------SGWIRTELKLITKDNL 335 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 114/284 (40%), Gaps = 20/284 (7%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVK 84 + +G + + ++ K+I+ +A+ VQLL D QN + Q + ++ + KGV Sbjct: 45 EIVVGFSQTGAESSWRIAHSKSIQAEAEKR-HVQLLFADGQNVHNNQVNAVNGFITKGVD 103 Query: 85 ALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGD 144 + I + +++A+ +PVV ++ + + D G G+ Sbjct: 104 VIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAE---EDLYETVMVADFVWEGRRAGE 160 Query: 145 LIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTA 204 +AK +G+ + + L G P A R T + + K + + + Sbjct: 161 WLAKQ----------TNGKARIIELVGTPAADVAVMRKTGFAEAIA-KHPDMKIIASQSG 209 Query: 205 MWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDAL 261 + + K M+ LS +I V A+ND MA+GA++A++A I V +DA+ Sbjct: 210 DFTRTKGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAV 268 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 A + G L TV + FD + G+ T Sbjct: 269 KPAFEAMMEGKLNATVECNP-MHGPLLFDTIDKIVRGEKVPKRT 311 >UniRef50_A6LC26 Sensor protein n=6 Tax=Bacteroidales RepID=A6LC26_PARD8 Length = 911 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 65/336 (19%), Positives = 120/336 (35%), Gaps = 42/336 (12%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD---TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 M L + + +L A + IGV+ D + + + +E +A P++ Sbjct: 1 MKGNPLYILLWLFLILCFACSPGKKEKKYVIGVSQCSMTDIWRQSMIRDMEVEALNHPEI 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L++ D+ D Q QI + K V L I+ + V +A +P + +++ Sbjct: 61 ELVVMDASQDNDTQISQIKGFIKKKVDLLIISSNETEPVTPVAVEAYRAGIPTIILDRKI 120 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +S + Y+G D+ E G G I+ G+ + + G G Sbjct: 121 -----NSDEYTTYIGADNYEIGRSIGMYISSLIK----------GETTILEIWGRRGSSS 165 Query: 178 AEARTTYVIKEL-NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 A R + + D +K +L W A + L + +++V A+ND Sbjct: 166 ATERHQGFVDAMSIDPNVKIRELD---GYWYKENAY---EEVLKLDSIEDVDIVFAHNDM 219 Query: 237 MAMGAVEALKAHN---KSSIPVFGVD---ALPEALALVKSGALAGTVLNDANNQAKATFD 290 MA+GA EA++ + + GVD + V G L + Sbjct: 220 MALGAREAIEERDSSLVGHVEFIGVDGLLGGGLGVEAVAQGKLDASFYYPTG--GGVAIK 277 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 +A + G+ K + +DK N Sbjct: 278 VAWQILSGQAYT---------KKYALSTAMIDKTNA 304 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 136/339 (40%), Gaps = 31/339 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K+++ L ++ +A A +IG + F + + + ++ AK L+ Sbjct: 1 MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEK-GYTLI 58 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D++ D +KQ ++ +L++G+ L +N DP A + E A+ VP V + + + + Sbjct: 59 TTDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDIALE 118 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A V ++ ++ + G+ + + L G G+ +A Sbjct: 119 A----PVITRVQANNAKNNNLIGEYAVGQFGDKPM---------NCIFLSGNQGNLVGQA 165 Query: 181 RTTYVIKELNDKGI------KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 R + + + + L WD M+ + +KI V + Sbjct: 166 RRDNFLLGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQ-GDKINCVYSEM 224 Query: 235 DAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 D MA+GA+ ALKA NK ++ V+ D + L VK G L T N+ + ++ Sbjct: 225 DDMALGAIRALKAANKLDNVKVYAHDGYKKGLEAVKKGELQATASNNPDLLTSTVLEVIG 284 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ + V +P + + KDN+ ++ K+ Sbjct: 285 QYQAGQTSFPD--------YVYIPSILITKDNVDKYYKE 315 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 125/337 (37%), Gaps = 42/337 (12%) Query: 2 NKKVLTLSAVMASMLFGAAAHAA---------DTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 K L +AV+ + + A + R+ V + + V + K Sbjct: 4 KKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAAGK 63 Query: 53 AAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 DV ++ +++++ +Q + I+ L + AL ++ P V+E A VPV+ Sbjct: 64 ELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VPVL 120 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 + +K ++GT++ E+G G L++ + ++ G Sbjct: 121 LIDT-----DAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGD----------KVAIISG 165 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G+ + R L + G + A D +A M+ L N ++ V Sbjct: 166 ALGNTATDERVKGAKAALEEAG--MVIVAEQPADSDKTKAMSVMENILQ--KNNDVKGVF 221 Query: 232 ANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDL 291 A ND MA+G + A++A + V G D EA+ + G LAGT+ + Sbjct: 222 AANDDMALGVLRAVEAKGL-DVKVIGTDGTLEAVESILDGKLAGTIAQNPYKMGYEGVKN 280 Query: 292 AKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 A +G+ +K + + KDN E Sbjct: 281 ALAAINGEKV---------DKRINSGVEVITKDNAQE 308 >UniRef50_A6LXH7 D-galactose-binding periplasmic protein n=6 Tax=Clostridium RepID=A6LXH7_CLOB8 Length = 350 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 173/344 (50%), Gaps = 26/344 (7%) Query: 1 MN--KKVLTLSAVMASMLFGAA---------AHAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 M KK+L+L+ + +L+ + + ++GV + + D F+S V+K +E Sbjct: 1 MKILKKILSLTFISIFLLYSTSQTSYASPDISSQTPLKVGVFLNSFSDLFISNVKKNLED 60 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDP--AAAGTVIEKARGQ 106 K + VQ ++ +Q QN+ +D L L +N V + K + Sbjct: 61 IQKQNENKVQFTFFNANGNQVIQNEDVDKALNDNFNLLVLNPVSTNIDQLQDTLNKVAQK 120 Query: 107 NVPVVFF--NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ-GWDLNKDGQ 163 N+P++ + +P + +Y + + TD +SGIIQG +I W AN+ D NKD Sbjct: 121 NIPLILYYAKTKPIVNFIKNYHNSVIIDTDVDQSGIIQGKIIVDTWNANKEKLDKNKDNI 180 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPN 223 IQ+++LKG P+ RT Y I +N+ GIKT++L W+ + M++ L + Sbjct: 181 IQYIMLKGPSNSPETIERTKYSILTINESGIKTQELLSIPCNWEEECGRTSMESTLLTLD 240 Query: 224 ANKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTV 277 KIE +I+NNDAMA+GA++ L+ + + IP+ G+D LP+A L+ G + GTV Sbjct: 241 G-KIEAIISNNDAMAIGAIKTLQKYGYNKGYNSRNIPIVGIDGLPKAQELINQGIMTGTV 299 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYV 319 + D+ A A + + NL G +GTN+K D + +PY Sbjct: 300 VQDSRAHANAIYTIGMNLISGNTPLNGTNYKFDESGVTINIPYQ 343 >UniRef50_C5ESX5 Multiple sugar-binding periplasmic receptor chvE n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESX5_9FIRM Length = 357 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 136/355 (38%), Gaps = 35/355 (9%) Query: 1 MNKKV-----LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP 55 M K V + MA+M G + + IGV++ D ++ + + Sbjct: 1 MKKTVRRLMVTCMVLGMAAMALGGCSSSKKKVIGVSLPTQDLARTQKDQEYLTKYLTEM- 59 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 ++ + + D + Q I+ ++ GV L I+ D ++ VIE A N+PV+ ++ Sbjct: 60 GYEVNVQFGKGDANIQASSIENMITSGVAGLIISPFDSSSMTKVIELAHENNIPVISYDS 119 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 L++ YY D + G Q I H G ++ G+P Sbjct: 120 LC----LNTEYIDYYSADDLEGIGACQAQYIVDHLG-----VAEGKGPFNIEIVAGDPAD 170 Query: 176 PDAEARTTYVIKELN---DKGIKTEQLQLD------TAMWDTAQAKDKMDAWLSGPNANK 226 +A + L+ + G T WD ++A+ +MD+ LS +K Sbjct: 171 NNATYFYKGAMDVLSPYLEDGSLVVPSGQIEFAVCGTPEWDGSKAQSRMDSILSTYYTDK 230 Query: 227 -IEVVIANNDAMAMGAVEALKAHNKSS-----IPVFGVDALPEALALVKSGALAGTVLND 280 ++ V+ ND +A+GA+ +LK+ S G D ++ + +G TV D Sbjct: 231 RVDAVLTQNDGIALGAISSLKSVGYGSSDMPLPITTGQDCDIASIKSILAGEQTMTVFKD 290 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV-----DKDNLAEFS 330 + AK D+ +L G+ +N V V V DKDN E Sbjct: 291 ISVLAKNAADVIDSLVKGEEPKLENYTTFNNGVKDVKATLVIPKALDKDNCDELL 345 >UniRef50_C8Q2Z4 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q2Z4_9ENTR Length = 308 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 25/309 (8%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++GV+I + DD F+S +R + + AK PD+ L D Q KQ Q+ + V Sbjct: 21 IQVGVSIAQMDDVFLSRLRGYLIEHAKQYPDMTLQFEDGQGAVDKQLSQVQSFINGKVDV 80 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 + +N VD + + AR VP+++ N+ PS + D Y+G+D E+G +Q Sbjct: 81 IIVNPVDTQGTKNMSDAARKAKVPLIYLNRMPSDSKM--GDGISYIGSDEIEAGRLQMGY 138 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 +A + + ++KG + RT + + K + DTA Sbjct: 139 LADMVKDRKN--------VNIAIMKGLLSNDATRFRTQGAKEVIA-KHPNMHVVMEDTAK 189 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALP 262 W + M+ W+ KI+++ AN D MA+GA A+K++ I V G D P Sbjct: 190 WMREDGMNLMNNWI--LTGQKIDILSANADEMAIGAAMAIKSNGLNIGKDILVGGTDGGP 247 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 L +KSG L TV DA +QA D+A+ A G+ D +P+ V Sbjct: 248 NGLQAIKSGLLTVTVFQDAKSQAFGAIDMAEKAAKGETLKDIN---------FIPFQLVT 298 Query: 323 KDNLAEFSK 331 N +F Sbjct: 299 PQNYQKFIT 307 >UniRef50_P45047 D-xylose-binding periplasmic protein n=193 Tax=Bacteria RepID=XYLF_HAEIN Length = 332 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 72/335 (21%), Positives = 133/335 (39%), Gaps = 25/335 (7%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K L+ V A +F ++AH+ D +IG++I R A++ ++ Sbjct: 1 MKIKSALLTLVGALTVFSSSAHSKDLKIGLSIDDLRLERWQKDRDIFVNKAESM-GAKVF 59 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + D S Q QI+ ++ K + L I + VI +A+ + + V+ +++ + Sbjct: 60 VQSANGDDSAQISQIENMINKNIDVLVIIPHNGEVLSNVISEAKKEGIKVLAYDRLINNA 119 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 LD +YV D+++ G +Q I + + L+ G P +A+ Sbjct: 120 DLD-----FYVSFDNEKVGELQAKSIV-----------AVKPEGNYFLMGGSPVDNNAKL 163 Query: 181 RTTY---VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 V+ L G W +A M+ L+ ++ V+A+NDA Sbjct: 164 FRKGQMKVLDPLIASGKIKVVGDQWVDSWLAEKALQIMENALTANKN-NVDAVVASNDAT 222 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A GA++AL A + + G DA A+ + +G+ TV A ++A L Sbjct: 223 AGGAIQALSAQGLSGKVAISGQDADLAAIKRIVNGSQTMTVYKPITKLADKAAEIAVELG 282 Query: 297 DGKGAADG---TNWKIDNKVVRVPYVGVDKDNLAE 328 + N + + + VDK N+ E Sbjct: 283 KNEKIEANAELNNGLKNVPAYLLDPIAVDKRNINE 317 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 221 bits (564), Expect = 3e-56, Method: Composition-based stats. Identities = 62/327 (18%), Positives = 114/327 (34%), Gaps = 36/327 (11%) Query: 9 SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQ 68 + S A +I V +Y FM + + ++ AK V++ + D++ D Sbjct: 21 TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKEL-GVEVTVLDAKGDS 79 Query: 69 SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKA 128 S Q QI LA+GV + ++ + A ++ V + D+ Sbjct: 80 STQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIADAA--- 136 Query: 129 YYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKE 188 V D++++G + + +AK + + +G G A R Sbjct: 137 --VAFDNEKAGKLGAEALAKLMGE----------KGTVLEYQGAKGAYHAILRGKGFNDG 184 Query: 189 LNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAH 248 + + + + D A W A + + I + ++ND M G V L Sbjct: 185 IK-QFPGIKVIGRD-AQWTADNALSLTVDNFTA--DSSINGLFSHNDEMVRGIVSGLSQI 240 Query: 249 NKS-------SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 NK IP+ GVD P AL +++G T+ + +L DGK Sbjct: 241 NKDAPVGAANHIPLVGVDGTPLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQV 300 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K+ + K+N+ + Sbjct: 301 P---------KMQLTDTKLITKENVDD 318 >UniRef50_C4ILH6 ABC-type sugar transport system, periplasmic component n=2 Tax=Clostridium butyricum RepID=C4ILH6_CLOBU Length = 325 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 22/339 (6%) Query: 1 MNKKV-LTLSAVMASMLFGAAAHAADTR-IG----VTIYKYDDNFMSVVRKAIEQDAKAA 54 M K + L + V+ G + + IG +D F + +E A Sbjct: 1 MKKLLSLLMVFVLMFTALGCSKKGSQGTSIGNTKVFASIADEDKFKQTIVSGMESYADEN 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 +V+L + + N+ Q QI KG A+ LV+ A +I A +PV+F N Sbjct: 61 -NVELDVAIAHNNVETQVQQIKDAKTKGYDAIVCILVESDTAQQIINAAGD--IPVIFTN 117 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 EP L S YVG+D E+ + + +++ + + VL +G Sbjct: 118 VEPDSGRLKSDKYI-YVGSDENEAAKYTFESLKEYFKDKKSF--------NAVLFEGSMD 168 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 A RT + +L G + D A WD +AK +A+L + +I+NN Sbjct: 169 SKSASVRTESLKSQLKKNGFDVNYVFQDDAGWDREKAKKMFEAFLKL--NVSYDCIISNN 226 Query: 235 DAMAMGAVEALKAHNKS--SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 D MA+G ++A++ + +P+ G+DA EA + +G ++ ++ Q ++ A Sbjct: 227 DEMALGVIDAMEENGIDPSKVPILGLDATQEACKAISNGKMSFSIKQSGEGQGESVIKAA 286 Query: 293 KNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + L +G + N K + PY VDK N+ ++ + Sbjct: 287 QALKNGDKISKIENGDSSGKYIWYPYSKVDKSNVQQYMR 325 >UniRef50_C8WRB6 Xylose binding protein transport system n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRB6_ALIAD Length = 370 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 83/332 (25%), Positives = 136/332 (40%), Gaps = 32/332 (9%) Query: 13 ASMLFGAAAHAAD---TRIGVTIY-KYDDNFMSVVR--KAIEQDAKAAPDVQLLMNDSQN 66 S GAA+ +I + I K P+ Q++ ++Q Sbjct: 35 GSTSTGAASAVNPHPSVKIAFLMPETNTSPRWEYDDRPDFIAAMKKLDPNAQIIYANAQG 94 Query: 67 DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD 126 ++ Q Q++ + +G K L + V+ AA T++ +A +VPV+ +++ +D Sbjct: 95 SEATQLQQVESAITEGAKLLVVAPVNGFAATTIVTEAAKAHVPVISYDRLIQNAKVD--- 151 Query: 127 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVI 186 YYV ++ E G +QG+ IA+H V+L G P P+A+ Sbjct: 152 --YYVSFNNVEVGKLQGEYIAQHTKKG----------GTVVMLDGAPTDPNAKQFAQGAH 199 Query: 187 KE---LNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 L G + T WD+ QA +M L+ + ++ V+A ND +A A++ Sbjct: 200 DVLDPLFKSGKLKLGYEQFTPNWDSQQALTEMQQALTRLHN-HVDAVLAANDNLAGAAIQ 258 Query: 244 ALKAHNKSSIPVFGVDALPEALALV-KSGALAGTVLNDANNQAKATFDLAKNLADGKGAA 302 AL+ + IPV G DA L + G + TV +A A LA +L GK Sbjct: 259 ALEQQHIKGIPVTGQDATDAGLHRIYYEGTQSMTVYKPIKEEANAAAQLAYDLITGKKPP 318 Query: 303 DG-TNWKIDNKVVRVPYVG-----VDKDNLAE 328 N ++N VP V V K N+A Sbjct: 319 ASLVNGTVNNGATNVPSVLLQPIVVTKSNVAS 350 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 64/327 (19%), Positives = 120/327 (36%), Gaps = 20/327 (6%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQL 59 MNK + S + ++ +A AA V + + F ++K IE +AK V + Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAA-AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + S+ D Q + L K K +A + + +A + + +V +++ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 120 KALD--SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 L + +V TD+ G I A + +++G+ G+ Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEG---------GEVAIIEGKAGNAS 170 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 EAR + + + + A WD +A D L I+ + ND M Sbjct: 171 GEARRNGATEAFKKA-SQIKLVASQPADWDRIKALDVATNVLQR--NPNIKAIYCANDTM 227 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 AMG +A+ K + V G D +PEA +V++G + TV + + L + Sbjct: 228 AMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDA- 286 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDK 323 + + + V + V + Sbjct: 287 --EKSGKVIPLDKAPEFKLVDSILVTQ 311 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 220 bits (562), Expect = 5e-56, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 122/335 (36%), Gaps = 32/335 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNF---MSVVRKAIEQDAKAAPDV 57 M K ++ L ++ + F R+GV I D + M + + PDV Sbjct: 1 MKKVLIFLLLIVTILSFA------KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDV 54 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 + + ++ S+Q Q+ LLAKG+ AL IN + A + +A + + ++ Sbjct: 55 EFYLVTAKE-PSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGI 113 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 +S + Y+ D+ G + G IA+ G+ V+++G P + Sbjct: 114 -----NSEEYNVYIAGDNYMYGYLAGKYIAEKLG----------GKGNVVVIEGIPSTIN 158 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R K L + + + W +A + M L+ I+ V +D M Sbjct: 159 T-ERVEAFKKAL-EPYPNVKIIAQQPGYWSREKAFEIMQTLLTKF--PNIDAVWTGDDDM 214 Query: 238 AMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGA-LAGTVLNDANNQAKATFDLAKNL 295 G + ALK + I + G + ++ G L G N +LA Sbjct: 215 LHGVLLALKQAGRDKNIVLVGGACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMA 274 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G+ I K + + V K+N ++ Sbjct: 275 LKGEHLNGFYQRGIPRK-IILSTETVTKENAKDYY 308 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 125/350 (35%), Gaps = 54/350 (15%) Query: 2 NKKVLTLSAV---MASMLFGAAAHAA--------------------DTRIGVTIYKYDDN 38 KK+L +A+ S+L G + IGV++ + Sbjct: 7 RKKMLIFTAITLIGVSVLLGGCGSKQGNTQTGTSSGTTTQNTEKSGEKVIGVSLLTREHV 66 Query: 39 FMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGT 98 F +++ KAI++ A + ++ D+ D +KQ Q+ + + V A+ + A Sbjct: 67 FYNLIEKAIQEKA-QGYKFKPIIMDASQDSNKQLAQVQDFITQKVDAIVLAPTASAGIAP 125 Query: 99 VIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDL 158 ++ A+ +PV + + D +V TD+ G + A+ Sbjct: 126 AVDLAKKAGIPVFTIDIKAEG------DVKSHVATDNYAGGKLAAKYAAEKV-------- 171 Query: 159 NKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW 218 +G+ + ++ R L + + + ++ +A + Sbjct: 172 -LNGKGKVAIITYSE-VQSCVDREKGFKDALAE-YPNIKVVDVENCSGSAEKAANLTQDI 228 Query: 219 LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKS-GALAGTV 277 L ++++ A D A+GAV +KA ++ + V G D PEA+ +K+ G V Sbjct: 229 LLKF--PDLDLIFAVGDPFAVGAVSTIKAAGRN-VKVIGFDGNPEAIQEIKNHGLWVADV 285 Query: 278 LNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 + + DL + +GK V +P VD N Sbjct: 286 VQHPDQIGGKVIDLIADYFNGKSVP---------PQVLIPPTIVDASNAK 326 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 133/331 (40%), Gaps = 27/331 (8%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLM 61 + ++ AV +L A+ + + + + + K E+ A+ + + Sbjct: 6 KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKL-GYEADV 64 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + + D + ++ QID + +A+ ++ + + + KA +PV N E +++ Sbjct: 65 SSHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQG 124 Query: 122 LDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEAR 181 L + +++ + + K + ++V LKG P +A R Sbjct: 125 LAE----AQLVSNNAQGAALGAQQWIKSVGDS----------ARYVELKGAPSDNNAATR 170 Query: 182 TTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGA 241 + + + + E++ D A WD Q +K + L I+ VI+ ND MA+GA Sbjct: 171 SNGY-ETVLSQYPGLEKVGSDVANWDRTQGFNKTQSMLQA--NPDIDGVISGNDEMALGA 227 Query: 242 VEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA-DGK 299 + ALK K + V G D P+A+ VK+G + TVL ++ +A G+ Sbjct: 228 ISALKEAGKLDDVVVGGFDGSPDAVEAVKAGEMDYTVLQPVAIFSEMAVRMADKYVTTGE 287 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 DG D + DN+ +++ Sbjct: 288 TGVDGEKQLFDC-------FLITSDNVDDYT 311 >UniRef50_C1I5M4 D-galactose-binding periplasmic protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I5M4_9CLOT Length = 350 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 102/300 (34%), Positives = 168/300 (56%), Gaps = 9/300 (3%) Query: 25 DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGV 83 R GV +Y D ++S ++K +E+ D + + +++ +Q QN QID L+ V Sbjct: 35 PLRAGVLLYNEDIYYISEIKKQLEKLESENKDEIDFIFYNAEGNQELQNKQIDELIKMKV 94 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQ 142 + +N+VD + +VI K + N+PV+FFN+EP S + SY+K+ YVGT + ++G I+ Sbjct: 95 DVILLNIVDVHESDSVINKIKENNIPVIFFNREPLSLNGIKSYNKSLYVGTQACDAGKIK 154 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 ++I D N +G + ++LL+GE + +A+ R+ VI+ LN+ GIKT ++ + Sbjct: 155 SEMIINEIKNENIKDKNGNGSLDYILLEGEKDNVEAQLRSECVIRFLNESGIKTNEIASE 214 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK------SSIPVF 256 W+ AK K+++ + + IEV+I+NND MA+GAV AL+ I V Sbjct: 215 VCNWEKECAKQKIESLFDKYS-DNIEVIISNNDDMAIGAVLALQEKGYNLGDPNKFISVV 273 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G+ E ++K G + GTVL DA +AK + +A NLA GK A T+++ D V V Sbjct: 274 GIGGTEEVREMIKKGFMTGTVLQDAEEKAKVLYRIALNLAQGKEALQDTDYEFDVTGVGV 333 >UniRef50_A6M0A2 Putative galactoside ABC transporter n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6M0A2_CLOB8 Length = 350 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 169/329 (51%), Gaps = 20/329 (6%) Query: 9 SAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLMNDSQND 67 + + A L +GV Y++DD ++ +R ++E V+ +S+N+ Sbjct: 20 TLIEAVPLNSHNDSTNPVNVGVVFYRFDDPYVIDLRHSLEDIESRNEGIVKFNFYNSENN 79 Query: 68 QSKQNDQIDVLLAKG-VKALAINLVD-PAAAGTVIEKARGQNVPVVFFNKEP---SRKAL 122 + QN I+ LL G + L ++LVD +I + +N+PV+F +K + Sbjct: 80 RDIQNQTINNLLESGNIDLLILSLVDLVNDPKELINSIKEKNIPVIFASKRILKVDENIV 139 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDGQIQFVLLKGEPGHPD--AE 179 SYDKAYY+ DS+++G +QG L+A W D NKD +Q+++L+G + Sbjct: 140 KSYDKAYYILPDSEQAGRLQGKLLANLWNGNKNTIDTNKDNIMQYIVLQGGINSNSNEST 199 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 RT Y I + D GIK EQL + W A+D DA L+ NKIEVVIANND MA+ Sbjct: 200 DRTKYCIMTIRDAGIKVEQLASEFCNWSEDLARDATDALLTRY-GNKIEVVIANNDTMAV 258 Query: 240 GAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 GAV+AL+ H + IPV G+DA+PE+L ++ G +AGTV D + A A FD+A Sbjct: 259 GAVKALQKHGYNKGDGTKNIPVVGIDAIPESLYFIQKGYMAGTVFQDPDVMANAFFDVAM 318 Query: 294 NLADGK---GAADGTNWKIDNKVVRVPYV 319 GK +++++P+ Sbjct: 319 -HLSGKIRFECPKEYRCDESGRIIQLPFK 346 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 152/335 (45%), Gaps = 27/335 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M + ++ +A+ + A IGVTI +D F++V+ +A++ +A + L Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD-----IGVTIAS-NDTFLAVMVQAMKDEAAK-TNQPLQ 53 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + + D +KQ QI +A V A+ +N+V+ A T+ + A +P+V+ N PS Sbjct: 54 VEFADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDL 113 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 KA ++G+ ++G +Q + + + ++++G AE Sbjct: 114 D-QLGPKAAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAG-----ILIIQGVLAQHAAEQ 167 Query: 181 RTTYVIKELNDKGIK-TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R+ V + + + TA WD +A+D M W++ + V++NND MA+ Sbjct: 168 RSKAVHDVVATPECNFMKIIDEQTAQWDPVKAQDLMTNWITAGHKP--VAVLSNNDDMAL 225 Query: 240 GAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 GAV +LKA + V G+DA EA+ VK+G L TV DA Q + D A LA Sbjct: 226 GAVNSLKAAGWEMKDVIVAGIDATKEAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAK 285 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G+ V +P+ V+ N+ + K Sbjct: 286 GEKVESP---------VWIPFELVNAANVDTYLNK 311 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 64/302 (21%), Positives = 125/302 (41%), Gaps = 18/302 (5%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 K + + + S L A A +I + + + + +R+ E+ AK ++ L++ Sbjct: 7 KNIFKFSALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEK-NIDLIVQV 65 Query: 64 SQ-NDQSKQ-NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 ++ D ++Q ++ ++AK V A+ + D A +KA +P++ + KA Sbjct: 66 AEKEDSTEQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKA 125 Query: 122 LDSYDKAY-YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++ + YVG D+ G ++ +A+ + +L+G PG + E Sbjct: 126 AEAAGLKFNYVGVDNFNGGYLEAKNLAEAIGK----------KGNVAILEGIPGVDNGEQ 175 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R +K + + + +A W+T QA L+ I + A ND MA+G Sbjct: 176 RKGGALKAFAE-YPDIKIVASQSANWETEQALTVTTNILTA--NPNINGIFAANDNMAIG 232 Query: 241 AVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 AV A++ + V G D +P A+ VK G + T+ Q + A + + Sbjct: 233 AVTAVENAGLAGKVLVSGYDGIPLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQ 292 Query: 300 GA 301 Sbjct: 293 EI 294 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 220 bits (561), Expect = 7e-56, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 123/310 (39%), Gaps = 26/310 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 A +AD I + +D+ F E AK + L+ +D +KQ++ ID Sbjct: 20 TALPAFSADL-IAIITPAHDNPFFKAEAVGAEAKAKEL-GYETLLMTHDDDANKQSEMID 77 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 + +G KA+ ++ A+ ++KA+ +P ++E + + + +++ Sbjct: 78 TAIGRGAKAIILDNAGADASVAAVKKAKDAGIPSFLIDREINATGVA----VAQIVSNNY 133 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 + + K + +V L G+ +A R+ ++D Sbjct: 134 QGAQLGAQEFVKLMGE----------KGNYVELVGKESDTNAGIRSQGYHDVIDD-YPDL 182 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + + +A W +A KM+ L I+ VI+ ND MAMGA+ AL+A + + V Sbjct: 183 KSVAKQSANWSQTEAYSKMETILQA--NPDIKGVISGNDTMAMGAIAALQAAGRKDVIVV 240 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 G D + +KSG + TVL A QA+ + A K +D Sbjct: 241 GFDGSNDVRDSIKSGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDC----- 295 Query: 317 PYVGVDKDNL 326 V ++ DN Sbjct: 296 --VLINADNA 303 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 72/330 (21%), Positives = 133/330 (40%), Gaps = 33/330 (10%) Query: 5 VLTLSAVMASMLFGA----AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 V T+ V ++LF + + + IG ++ + V+ + I+ ++ DV L Sbjct: 22 VATICIVSIALLFFSRNKNESEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDV-LE 80 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 DS D Q Q++ + + V + IN VD G+ +EKA+ +PV+ + Sbjct: 81 TRDSGMDAKVQAKQVEKFIEEKVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIY-- 138 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + V +++ ++G + K + + + + L + + A Sbjct: 139 --NRSFVDGTVVSNNYQAGEQCAKDLMK-----------RRKKGKILFLV-QSENKSAID 184 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + L G K E + ++ ++ L+ I+VV+A ND AMG Sbjct: 185 RIKGFKETLEKAGWKYENVGELECQGQLELSQPLVEKVLNKT--KDIDVVMALNDPSAMG 242 Query: 241 AVEALKAHN-KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 A+ AL A + S + V+G D PEA ++ +A T K T ++ + DGK Sbjct: 243 AMAALDAEHMLSDVLVYGADGSPEAKTMIYENKMAATSAQSPRTTGKKTVEMLYKILDGK 302 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 K VP + KDN+ ++ Sbjct: 303 K---------TEKQCIVPVSLITKDNINDY 323 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 115/310 (37%), Gaps = 19/310 (6%) Query: 23 AADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 IG + D +++ + + ++ AK DV L+ + ND ++Q QI+ L+ K Sbjct: 57 GKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQIETLINKK 116 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 V L I D A V KA +PVV ++ + ++G D+ G+ Sbjct: 117 VDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQA----YRCWIGGDNYGMGLNA 172 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 G I + + + V L G RT L +++ Sbjct: 173 GRYIGEQLKGKKN--------AKVVELAGLDNLELTRQRTAGFDDALK-NYPNIKKVGRQ 223 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALP 262 A + + KM L + + + ++D +GA A++ + + G Sbjct: 224 AAEFTVESGQSKMAQLLQAHSG--FDALWNHDDDQGVGAERAIQQAGRDDFLMVGGAGAK 281 Query: 263 EALALVKSG--ALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 A+ +K+ L TVL A + DLA+ L G G +I + + Sbjct: 282 RAMDAIKADNTVLKATVLYPP-TMAASAIDLARALGQGNGVGGLAELEIPA-SLTLYSAV 339 Query: 321 VDKDNLAEFS 330 V K+N+ E+ Sbjct: 340 VTKENVDEYL 349 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 219 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 69/314 (21%), Positives = 117/314 (37%), Gaps = 34/314 (10%) Query: 18 GAAAHAAD-TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 G A D IG + DD + + ++++ + +L+ D+ + + Q QI+ Sbjct: 16 GCAGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIE 75 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 LL G+ L ++ + VIEKA Q VPVV ++ S S YVG D+ Sbjct: 76 ELLRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTS-----SPYYTAYVGGDNY 130 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 + G G+ A G + + + G P A R ++ L + Sbjct: 131 QVGKTVGEYAAALLG----------GNGKMIEITGLPRSSPASDRHRGLVDALATR-PSI 179 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS-SIPV 255 ++ W AK ++ L P ++++ A N+ MAMGA E I V Sbjct: 180 RRVATLNGQWQKDIAKSELRKVL--PRFPDLDLIFAQNEVMAMGAREVCNDIFPDRKIRV 237 Query: 256 FGVDALPEA---LALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 GVD LP + +V G + T L + +A N+ + + Sbjct: 238 IGVDGLPGQFGDIQMVYDGHITATALYPTG--GEEAARVAMNILQKQPYQKENLLQ---- 291 Query: 313 VVRVPYVGVDKDNL 326 +D N+ Sbjct: 292 -----TAIIDSSNV 300 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 65/323 (20%), Positives = 132/323 (40%), Gaps = 34/323 (10%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIE----QDAKAAPDVQLLMNDSQN--DQS 69 L + ++G +++ + +++ E + + ++ L M +Q D+ Sbjct: 61 LGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQ 120 Query: 70 KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY 129 Q ++ ++ K AL ++ + +EKA+ N+PV+ N + + Sbjct: 121 GQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIK------NADI 174 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 189 +VG + +G + + I+K G+ + ++ G P A RT + Sbjct: 175 FVGPKAIMNGELAAEWISKKIG----------GEGEVAIVIGMPKAFAARQRTLGFENWM 224 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 + ++ A WD A+AKD + W+ ++ + NND MA+G EA+ A Sbjct: 225 KSNAAGVKIVEKQNADWDRAKAKDLAEIWIKKY--PNLKAIFCNNDVMALGVQEAVNASK 282 Query: 250 KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI 309 + I V GVD + EA ++ G + TV + + + ++A G+ Sbjct: 283 R-DILVVGVDGIKEAYESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLP------- 334 Query: 310 DNKVVRVPYVGVDKDNLAEFSKK 332 +V+ P +D N+ E S+K Sbjct: 335 --RVIWTPQALIDSTNVNEPSEK 355 >UniRef50_A6LY41 D-galactose-binding periplasmic protein n=2 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LY41_CLOB8 Length = 352 Score = 219 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 177/344 (51%), Gaps = 25/344 (7%) Query: 3 KKVL--TLSAVMASMLFGAAA-----------HAADTRIGVTIYKYDDNFMSVVRKAIEQ 49 K++L L A++ ++ G + + R+G+ +D+++ ++RK E Sbjct: 5 KRILSIALLAIILVIMLGNNSYMTTNASTNYRQGSPVRVGLFTRDLNDDYIVLLRKNFED 64 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNV 108 K P V ++ +QS QN I+ L KG+ + +++V+ +I + N+ Sbjct: 65 IQKNNPGEVSFSFYNANFNQSTQNTDIENALHKGIDLILLDMVNLLEIREMINRISQFNI 124 Query: 109 PVVFFNKEP-SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA-NQGWDLNKDGQIQF 166 PVV FN+ P S +A+ SY KA+YVGTDS + G +QG +IA W Q D NKD +Q+ Sbjct: 125 PVVVFNRVPFSMEAIKSYKKAFYVGTDSAQGGTLQGKMIADAWRNHKQLIDKNKDDTLQY 184 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 VLL GE + + R+ Y + +N+ IKTEQL WDTA AKD + L NK Sbjct: 185 VLLVGEKLNKTSIDRSAYSVSTINEAFIKTEQLASPILNWDTASAKDAV-DALFLRFGNK 243 Query: 227 IEVVIANNDAMAMGAVEALKAHNKS------SIPVFGVDALPEALALVKSGALAGTVLND 280 IE +I+N+D+MA+GAV+AL+ + + SI V G+D + EA LV G + GT + Sbjct: 244 IEAIISNDDSMAIGAVQALQKYGYNTGNKSQSIIVVGLDGVSEAKELVSKGFMLGTASQE 303 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNK--VVRVPYVGVD 322 + + + NL + +G ++K D V +PY Sbjct: 304 TADMTNTIYTVGMNLVKDRNPLEGVSYKSDETGVAVLLPYEPYT 347 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 219 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 145/349 (41%), Gaps = 34/349 (9%) Query: 1 MNKKVLTLSAVMASMLFGAA----AHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAP 55 + ++ A +L A A ++G +Y + + + I++ A A Sbjct: 3 ITRRTTLAIIGGAGLLPIAGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANG 62 Query: 56 DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNK 115 +L + D D + Q Q D++ + +D AA VI KA +N+PVV Sbjct: 63 IAELTVFDGNYDHATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVG--- 119 Query: 116 EPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGH 175 S S + ++G+D +G + + + K + V+L G G+ Sbjct: 120 --SNGPAKSDELVSFIGSDDVAAGQYEAETLFKAIGD----------KGNIVVLIGPEGN 167 Query: 176 PDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANND 235 E RT K L D L+ TA W ++A M WL+ KI V+A ND Sbjct: 168 LGQELRTEGNKKAL-DANKDITVLERKTANWSRSEAMVLMQNWLTSHKG-KINGVLAQND 225 Query: 236 AMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 M +GA+ A+KA +IPV G+D + +A+ V+SG + ++ DA QA+ D+A Sbjct: 226 EMGLGAIAAMKAAGIDPKTIPVVGIDGVTDAVRAVQSGDMILSIRQDAQTQAQGAVDIAL 285 Query: 294 NLADG----------KGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G K +K+ VP+ V K+N AEF +K Sbjct: 286 RRVIGDSYQPLAECWKKYPQMAWGNGTDKLYSVPWTYVTKENAAEFLQK 334 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 35/332 (10%) Query: 1 MNKKV-LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M +K+ L + + +L G A IGV+ +D + + ++ + + Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCS-EDIWRDKLNDELKMGEYLNDSLIV 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 + S +D QN Q++ + +GV L ++ +A +E+A + +PV+ ++++ Sbjct: 60 KLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKT-- 117 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 +S ++G D+ G G IA+ G+ + V + G G A Sbjct: 118 ---NSDKYTAFIGCDNYTIGKSMGTFIAQQL----------QGKGRIVEISGLEGSSPAL 164 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R + + + + + W M L + V A+ND +A Sbjct: 165 ERHRGFMDAIK-PYPGLQVVASEEGNWKEEGGIQAMKRILKQTQ--DFDYVFAHNDCLAW 221 Query: 240 GAVEALKAHNKS-SIPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 GA A + + GVD + L LV+ G + L LA + Sbjct: 222 GAYVAARQMRVKRNYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK--GDEVIALAMKI 279 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 + + + + N A Sbjct: 280 LKHQPYERDN---------YLSTSIITQANAA 302 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 67/316 (21%), Positives = 124/316 (39%), Gaps = 29/316 (9%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL 78 A +G + + + ++I+ +A+ + L D+Q++ Q + Sbjct: 15 CTVSQAKLTVGFAQTGSESVWRAANSESIKSEAEKQ-GIDLRFVDAQSNVDNQMKALRSF 73 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKES 138 +A V A+ + + + V++ A+ +PV+ +++ D A ++G+D + Sbjct: 74 IADQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKI---VADPSLYATFIGSDFFKE 130 Query: 139 GIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK-GIKTE 197 G + + I H D + + V L+GEPG A R + Sbjct: 131 GQMAAEWILAH----------ADQKRKIVELQGEPGSSAANERQRAFASTMATHTSDGFR 180 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIP 254 + A + Q + M L+ + IE+V A+ND MA+GA+EA++A +S I Sbjct: 181 IVARKVANFRRDQGRQAMAELLTTH-GSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIM 239 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V +DA+ A+ V SG L TV + + L G T K Sbjct: 240 VVSIDAIKTAVEAVASGKLNCTVECNP-LFGPKVIEAVVRLTSGGTVMKETFNKD----- 293 Query: 315 RVPYVGVDKDNLAEFS 330 + +D N A+ Sbjct: 294 ----IVIDASNAAQLL 305 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 118/332 (35%), Gaps = 36/332 (10%) Query: 1 MNKKVLTLSAVMASMLFG-AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M + + L + SML A + IGV+ + V + Q +V L Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQC-CGGVWREKVNNEMRQAQYQYKNVDL 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 L ++ND Q QID ++A+ V + + + IE+A ++PV+ F+++ Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKV-- 117 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + +G D+ E+G +A DG+ V + G Sbjct: 118 ---KTPHYTASIGGDNVEAGREVARFLASKL----------DGKGTVVEITGLKDASPVI 164 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R + + + + + W +A++ M +L + V ++D A+ Sbjct: 165 ERHRGFHEVMK-NYPGIKVV-TLESNWKLERAQELMKQYLD--KGGHADGVFGHSDLGAI 220 Query: 240 GAVEALKAHNKSS-IPVFGVDALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 GA + + + G+D LP E + VK G A + + Q + +LA N+ Sbjct: 221 GAFLEAERRGIDKQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYPT--QGEKIMELAMNI 278 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 GK K +N Sbjct: 279 LQGKPYKKDNVMK---------SFLATPENCD 301 >UniRef50_B1QXR7 D-galactose-binding periplasmic protein n=2 Tax=Clostridium butyricum RepID=B1QXR7_CLOBU Length = 351 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 182/333 (54%), Gaps = 19/333 (5%) Query: 2 NKKVLTLSAVMASMLFG---------AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 + +L +S + S +F ++ V + ++D+ +S +RK +E+ K Sbjct: 5 KRLLLLMSIFVLSTMFLIYQKTNVRILCLERNPAKVSVFLSDFNDDLISEIRKNLEEIEK 64 Query: 53 AAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 D V+ D + +Q QND+I +L +G + +N+VD A + TVI+K + NVPV+ Sbjct: 65 KNDDKVEYNFYDGKLNQKNQNDEIAKVLEEGTDLILLNIVDRAYSKTVIDKIKANNVPVI 124 Query: 112 FFNKEPSRK-ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA-NQGWDLNKDGQIQFVLL 169 FN+EP + SY +A Y+GTD ++GI+QGD++ W + + D N DG +Q+ +L Sbjct: 125 LFNREPLTSVPIQSYGRAIYIGTDPVQAGILQGDMLIDLWNSSEKIIDRNNDGILQYYML 184 Query: 170 KGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEV 229 +GE + +A RT YVI + GIKT+Q+ +D A W A + + I+V Sbjct: 185 EGEGDNTEATERTKYVISTIEKSGIKTQQVGVDFADWSEKAAYEHTKEAFEKYSL-DIDV 243 Query: 230 VIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLNDANN 283 +IAN+D+MA+GAV+AL+ + + IPV GVD +P+A ++ G + G+V D + Sbjct: 244 IIANDDSMAIGAVKALQEYGYNKGEKSKTIPVVGVDVIPKAKEFIEKGYMLGSVYQDPKD 303 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 A+A +++ NL + K T + +DN V + Sbjct: 304 YAEALYEVGMNLINYKDPIADTKYTLDNTKVSI 336 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 87/343 (25%), Positives = 144/343 (41%), Gaps = 30/343 (8%) Query: 1 MNKKVLTLSAVMASMLFGA--AAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDV 57 +N++ + ++ML GA AA RI + +M I+ A V Sbjct: 2 INRRTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKV 61 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++ + D + D Q +QID L + A+ + D A+ I+KA VPV+ Sbjct: 62 EITVFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVI-----V 116 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 S S + + D +E G I + +AK + VL++G G Sbjct: 117 SALKTSSKNYTASIIVDDREGGRIIAEEMAKRLPSG----------GNLVLMEGPIGQSA 166 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R V L + + L + W A+ + M+ WLS ++I V+A ND M Sbjct: 167 QIERRAGVDAGL-EAHSNLKLLADKSGNWSRAEGQALMENWLSAYP-DQINGVLAENDEM 224 Query: 238 AMGAVEALKAHN--KSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 A+GA+EA+KA N S +PV +D +P+A V++G +A T+ A + + DLA Sbjct: 225 ALGAIEAMKAANVDLSKVPVIAIDGIPDAKRAVENGEMAVTLYKYARAEGQGAVDLALRQ 284 Query: 296 ADGKGAADGTN--------WKIDNKVVRVPYVGVDKDNLAEFS 330 G + K VP++ +DKDN+ ++ Sbjct: 285 VIGTEYKPQSEVWNGLMEWKDGTQKDYVVPWLILDKDNVKKYM 327 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 120/302 (39%), Gaps = 16/302 (5%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS 64 +L +A+ + + A +G + + + + +++ AK A + L +D+ Sbjct: 11 LLVGAALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDA-GINLKFSDA 69 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 Q Q Q I +A+ V +A + V + V+ +A+ +PV+ ++ K D+ Sbjct: 70 QQKQENQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVK--DT 127 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 +G+D E G G + + + N+ G I L+G G A R Sbjct: 128 SLYVTMIGSDFLEEGRRAGRWLEERYK-------NEAGPINIAELQGTVGSAPANDRHAG 180 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 +++ + K + + + + A K M+A+ + +I VV A+ND MA+GA++A Sbjct: 181 LMEVIK-NDPKFKIIASQSGDFTLAGGKQVMEAF-AKTYGKQINVVYAHNDDMALGAIQA 238 Query: 245 LKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 ++ + V DA + +G + V K++ GK Sbjct: 239 MEEAGIKPGKDVSVVSFDATKGGFEAMIAGKINVDVECSP-LLGPQLMTAVKDVVAGKQL 297 Query: 302 AD 303 Sbjct: 298 PK 299 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 78/307 (25%), Positives = 128/307 (41%), Gaps = 30/307 (9%) Query: 29 GVTIYKYDDNFMSVVRKAIEQDAKAAP--DVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 + + + F+ + +++++A+ + D +ND + Q QI+ + GV + Sbjct: 2 ALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDGI 61 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 I V ++ A V VV N+ S D +VG D++ +G + Sbjct: 62 IIEPVSTDGIVKAVKDAEKVGVKVVILNQRIS----DQNAADTFVGADNESTGAALMKKV 117 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 + DG+ V L G G R+ L + + + D+A W Sbjct: 118 MEDL----------DGKGNIVELLGPMGSDGQVGRSKGFDSVLAE-YPDVKVIASDSADW 166 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEAL 265 DTA+A + WL+ I+ V+A ND MA+GA +A+K + I V+GVDA + L Sbjct: 167 DTAKALTLTENWLTSS---DIQAVVAQNDGMAVGAAQAIKEAGLTDKIKVYGVDATSDGL 223 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 + +G + GTV NQ K + DL NL G+ K V V K+N Sbjct: 224 NAIVNGGMTGTVSQGTENQGKISADLCSNLIYGQSVP---------KEVIATNVVYTKEN 274 Query: 326 LAEFSKK 332 + E KK Sbjct: 275 VNEILKK 281 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 63/342 (18%), Positives = 123/342 (35%), Gaps = 43/342 (12%) Query: 1 MNKKVLTLSAVMASMLFG------------AAAHAADTRIGVTIYKYDDNFMSVVRKAIE 48 M K +L L A + G +A +I + Y F V + Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 49 QDAKAAPDVQLLMNDSQNDQS--KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQ 106 + + V++ + + KQ ++ + K V AL I +DP A V +KA Sbjct: 61 KAGEEL-GVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDA 119 Query: 107 NVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQF 166 +PVV F+ + ++ TD+K +G + G+ +AK +G+ + Sbjct: 120 KIPVVTFDSNV-----KGDITSSFIATDNKVAGAMAGEQLAKLI----------NGKGKV 164 Query: 167 VLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANK 226 ++ PG A R + L K + L + D ++A ++ Sbjct: 165 AIVSHNPGTTTAIEREAGFREALA-KYPDIKILNTQFSDGDKSKALAITLDIINA--NPD 221 Query: 227 IEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQA 285 I + N+ G + ++ + + G+D+ + ++ G ++G V+ D N Sbjct: 222 IAGIYGTNEPSIFGIAKGVEEKGLTGKVVLVGIDSSEDLAKFLEKGVISGLVIQDPYNMG 281 Query: 286 KATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 T L+ G+ K + + V K+N+ Sbjct: 282 YQTVQQLYKLSKGEKV---------EKRIDTGAILVTKENIN 314 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 113/288 (39%), Gaps = 19/288 (6%) Query: 24 ADTRIGVTIYKYD-DNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKG 82 A +G + + + + F +++ +A+ V+LL ++Q+ SKQ + L+AKG Sbjct: 79 ASATVGFSQSEKEANPFRIAETASLKDEARKR-GVKLLAVNAQSQFSKQISDVQDLIAKG 137 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQ 142 L I ++ V+ A + +P+V +++ + D ++G+D E G Sbjct: 138 ADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINAGPCK--DYVSFIGSDFVEQGRRA 195 Query: 143 GDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLD 202 D + + G+ + +L G G+ RT + +K + + Sbjct: 196 ADKMIEATG----------GKGEVAILLGAAGNNVTTERTKGFKDRVAEKAPGLKVVFEQ 245 Query: 203 TAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS--IPVFGVDA 260 T + + + + + I+ + A ND M +GAV ALK+ K + + VD Sbjct: 246 TGDFAREKGQSVTEQLIQSKPG--IKGIYAENDEMGLGAVNALKSAGKKPGAVKIVTVDG 303 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 A+ + G ++G + ++ F G+ K Sbjct: 304 TRNAVKQIVDGWISGVIESNPRF-GPLAFQTLDTFTKGEEVQQDIVIK 350 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 73/329 (22%), Positives = 131/329 (39%), Gaps = 33/329 (10%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQD-AKAAPDVQLLMNDSQNDQSKQNDQIDV 77 A ++G +Y F + A+++ V+L + D + D QN+Q + Sbjct: 46 AQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQNNQFET 105 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 ++ + + +D A + KA N+PVV S ++S YVG++ Sbjct: 106 MITQKYDGILFVPIDLQAGADAVSKAAEANIPVVG-----SNGRVNSDKLLSYVGSNDVI 160 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE 197 +G +Q + G+ V+L+G G R + L K + Sbjct: 161 AGAMQAQAVVDAMG----------GKGNVVILEGPIGQSGQVERRQGNLSVLA-KYPNVK 209 Query: 198 QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK--SSIPV 255 L++ TA W A+A + WL+ KI +I ND MA+GA+EA+KA +IP Sbjct: 210 VLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAIEAVKAKGLDPKTIPT 268 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNW-------- 307 G+D + +A+ VK+G + +VL DA+ Q++ D+ G + Sbjct: 269 AGIDGVSDAVRAVKAGIM-ASVLQDASAQSQGALDVLLRKLIGASYKPRSAMWAQYGAAG 327 Query: 308 ----KIDNKVVRVPYVGVDKDNLAEFSKK 332 + +P+ + N + Sbjct: 328 LQWDDGAARAYNIPWTPITLQNADALLAQ 356 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 53/311 (17%), Positives = 107/311 (34%), Gaps = 28/311 (9%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 +IG + Y + + + + A +L+M ++ ++ KQ ++ L+A Sbjct: 63 GGEKKLKIGFSESTYSGAWRVAEVEDVTKYA-EMNGYELIMTNADSNIEKQIGDVEDLIA 121 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + + I VD A E + +PV+ + + D + +D + G Sbjct: 122 QKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWK-EDFITTIRSDQYQQGQ 180 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + H + + G PG DA+ R+ + + D + +Q Sbjct: 181 GCAEWTVGHVGDKDTT---------VLEITGNPGQSDAQNRSRGFNEYVAD-HSNIKVIQ 230 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFG 257 W A A++ + + K +V+ ++D MA+GA+ LK + + Sbjct: 231 -QNGEWSRATAQEVVQNV--AQSGQKFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIVA 287 Query: 258 VDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVP 317 VD EAL +K+ + + FD G + V Sbjct: 288 VDGQKEALDAIKADEIGAIITCTPKG-GDVLFDCINKYFAGDELEEE---------YFVH 337 Query: 318 YVGVDKDNLAE 328 + +N+ E Sbjct: 338 QSTITTENVDE 348 >UniRef50_A8RR89 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RR89_9CLOT Length = 382 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 114/315 (36%), Positives = 173/315 (54%), Gaps = 10/315 (3%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 A+ + V +DD F S R ++ +A+ + + L M D+ ND S N +++V L+K Sbjct: 54 AQAEMKATVIWRAFDDQFQSGFRIIMQNEAEKSGGITLDMQDAANDVSTANSKLEVALSK 113 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 +AI D + +++K VP VFFN EP ++ Y+ +YVG +K+SG + Sbjct: 114 KTDVVAICAPDRESIENMMKKCDADGVPAVFFNMEPMEDTMNRYENIWYVGAQAKQSGEM 173 Query: 142 QGDLIAKHWAANQG-WDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 + +W N+ D N DG++ V+L+GE G D RT + L GI+ E L Sbjct: 174 CAQALINYWNDNKDIADKNGDGKLSLVILQGEIGQQDVTLRTDAYKETLEKNGIEYEILA 233 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS------IP 254 DTA WD AQA DKM+AW++ + IE V+ NND+MAMGAV+A + +S +P Sbjct: 234 CDTANWDQAQALDKMNAWITAYGIDGIEGVLCNNDSMAMGAVQACINNGYNSGDAEKFVP 293 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG---TNWKIDN 311 + G+DA +AL +K+G+L GTVLND +Q+ A ++ K + G + N +D Sbjct: 294 IVGIDANIDALEAMKAGSLLGTVLNDRKSQSDAIINVIKAVHAGTEITEDVVGVNCTVDG 353 Query: 312 KVVRVPYVGVDKDNL 326 K V VPYV VD+ NL Sbjct: 354 KYVWVPYVIVDESNL 368 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 63/353 (17%), Positives = 134/353 (37%), Gaps = 42/353 (11%) Query: 1 MNKKV--LTLSAVMASMLFGAAAHA-------------------ADTRIGVTIYKYDDNF 39 M+K++ + V+ SML A + +G T+ + +F Sbjct: 16 MSKRLKSTAILLVIVSMLVCACSSGGGKADTEKTEKKTEDSGNKDKITVGATLSDFTISF 75 Query: 40 MSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTV 99 + + + K +++ ++ D +D + Q +QI+ + +GV A+ IN V A Sbjct: 76 QAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFITQGVDAILINAV-SDAVEPS 134 Query: 100 IEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLN 159 ++KA +PV N+ + D +Y++G + SG + + +Q Sbjct: 135 LKKAMEAGIPVFAVNRSIT----DENAYSYFIGANDTLSGEQMANCLLDMIEKDQMDSC- 189 Query: 160 KDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK--TEQLQLDTAMWDTAQAKDKMDA 217 + ++G G R +++KG L+ D + Sbjct: 190 -----NILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERIPCKHDKETVISSIQN 244 Query: 218 WLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI--PVFGVDALPEALALVKSGALAG 275 L+ A +I+ ++ A+GA++A+++ ++ + + G+D E +K+G + G Sbjct: 245 MLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDMPTEVWDAIKAGKIYG 304 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 TVL D Q + + G + K + V +N+ + Sbjct: 305 TVLQDPAEQCEVGIKTIETYFFGDK------DSLKEKFIETDLPMVTSENVND 351 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 67/335 (20%), Positives = 126/335 (37%), Gaps = 38/335 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAA------HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M +K L L L G + A + + + + F VR + A Sbjct: 1 MLRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANEL 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 + L + D+ +D Q Q+D ++ GV +N D A + + + +P + + Sbjct: 61 -GIDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVD 116 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 + + D A + +++ E G AA Q + ++L+G G Sbjct: 117 RTITGA-----DVAALIDSNNTEGGA----------AAASVLAKAIRAQGEVIVLRGIEG 161 Query: 175 HPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANN 234 + R + + + + + + A +D A+D + L+ + + A N Sbjct: 162 SSSSAERYEGFTQAMAEH-PRVRIVAAEAADFDRDTARDLVTDLLADH--PDVAGIFAEN 218 Query: 235 DAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKN 294 D MA+GAV+AL + V G D E + VK+ L T+ ++ + A Sbjct: 219 DEMALGAVDALGERAGKDVKVVGFDGTEEGVRAVKNRKLVATIAQQSSELGATAIEQAGK 278 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 L DG+ A V P + V +DN+ ++ Sbjct: 279 LLDGEAAES----------VHTPVMVVTRDNIEKY 303 >UniRef50_C6LHP7 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHP7_9FIRM Length = 365 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 64/318 (20%), Positives = 129/318 (40%), Gaps = 23/318 (7%) Query: 1 MNKK---VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 MNKK +L +AV ASM G +A IG ++ ++ + K E Sbjct: 38 MNKKVLGMLACTAVAASMAVGVSAEGDLITIGYAQVGHESDWRTANTKNYEDVFSEENGY 97 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L + D ND +KQ + + + +G+ + I + A TV+++A+ +PV+ ++E Sbjct: 98 ELSLIDCDNDNAKQLEAVRNFITQGMDYIVIAPIQSAGWDTVLQEAQDAGIPVIIADREI 157 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 D+ +VGT + G+ G+ +A+ + + + ++G G Sbjct: 158 E---ADASMYDAWVGTAPYDEGVTAGNWLAEQLDGA---------EAKILQIEGSVGASA 205 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 A RT + + + + E L + + + M++++ + VV+ ND Sbjct: 206 AIGRTDGFAEVMAEH-SEWELLDSQSGDFTQDGGQAVMESFIKTYEG-QFNVVVCQNDNE 263 Query: 238 AMGAVEALKAHNK-----SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLA 292 A GA++A+ A + + DA + L G + V + QA+ + Sbjct: 264 AYGAMDAMDAAGITYGVGGDVILISYDATHDGLQYTLDGKINLDVECNPI-QAETVKGVI 322 Query: 293 KNLADGKGAADGTNWKID 310 + + G+ T + Sbjct: 323 EQMEAGEDFEATTLITDE 340 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 123/312 (39%), Gaps = 29/312 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 +IG T Y++ F SV+ + I + K D QL+ DS KQ +QI L+ + Sbjct: 40 STEPRKIGATYMTYNNTFYSVINEEISRILKEHGD-QLIALDSAMSLKKQKEQIHYLIEQ 98 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 V A+ I VD +++A +PV+ + E + + Y + +D+ ++G+ Sbjct: 99 QVDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKH----NKNITYSIVSDNYDAGVQ 154 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + + VLL+ R + + ++ Sbjct: 155 CAKDMMRKL-----------DHANIVLLQHS-TTRSGYLRIKGFEDTI-QSNENYKVVKR 201 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 260 A KM++++ + +VV+ ND AMGA+ AL ++N V+G+D Sbjct: 202 MECDGQLEVAMPKMESFIE--EGIEFDVVMCLNDPSAMGAMAALSSNNILKDKYVYGIDG 259 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 PEA +V G +A TV K ++ L + NK P Sbjct: 260 TPEAKEMVVEGKMAATVAQSPKTFGKKAGEVIYKLFSQETIK--------NKNEMSPVQI 311 Query: 321 VDKDNLAEFSKK 332 + K+N+ ++S + Sbjct: 312 ITKENVQDYSTE 323 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 72/337 (21%), Positives = 124/337 (36%), Gaps = 36/337 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR-IGVTIYKYDDNFMSVVRKAIEQDAKA--APDV 57 MN + L+A + + L + A + +GV + + F + K E AK P V Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 ++ S+ D + Q QI+ +A V + +N DP V++KAR + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AV 113 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + + V +D+ +G +A+ G+ V++ G P Sbjct: 114 VAVDVGAVGADATVMSDNAMAGAESCKFMAQQLG----------GRGNVVIVNGPP-VTA 162 Query: 178 AEARTTYVIKELNDKGIKTEQL-QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 AR K L + L A + M L+ KI+ V A ND Sbjct: 163 VSARVAGCKKVL-GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAH--KKIDAVFAINDP 219 Query: 237 MAMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGA--LAGTVLNDANNQAKATFDLAK 293 +GA A+K +S + + VD P+A +K A + + A + Sbjct: 220 TGIGAELAVKQAGRSDVKLIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGY 279 Query: 294 NLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++ +GK A V +P V K N+A ++ Sbjct: 280 DILNGKRPAKS--------QVLLPTPAVTKANVASYT 308 >UniRef50_A4AIX2 Solute-binding protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AIX2_9ACTN Length = 342 Score = 216 bits (552), Expect = 7e-55, Method: Composition-based stats. Identities = 73/327 (22%), Positives = 135/327 (41%), Gaps = 16/327 (4%) Query: 5 VLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAI--EQDAKAAPDVQLLMN 62 + + L GA A+ I + + + + + A+ P +++ Sbjct: 1 MFASLLLGGCTLIGANGADAEYTIALLLPESKTARYEAYDRPFFEAKVAELCPKCEVIYA 60 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 ++ D KQ Q + A+G+ L ++ VD +AA T++ A+ + VPV+ +++ L Sbjct: 61 NADQDPVKQQQQAESAFAQGISVLVLDPVDSSAAVTIVAAAQSRKVPVISYDRLIGSPEL 120 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 A++V D+++ G +QG + + AA+ ++ G P ++ Sbjct: 121 -----AFWVSFDNEKVGSLQGKALIERLAADGLSS------GNIAMINGSPTDNNSRLFK 169 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 ++ T + DT W +A++ M + ++ N + V A NDA A GA+ Sbjct: 170 KGAHNVIDGSAF-TVVAEFDTPDWSPDKAQEWMASQVT-QFGNSLVGVYAANDATAGGAI 227 Query: 243 EALKAHNKSSI-PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGA 301 ALKA + PV G DA A+ + SG T+ D +A+ A L +GK Sbjct: 228 AALKAGGVMPLPPVTGQDAELTAIQRIVSGDQYMTIYKDFKREAEIAATHAVALLNGKTL 287 Query: 302 ADGTNWKIDNKVVRVPYVGVDKDNLAE 328 + + V V DN+ E Sbjct: 288 VGQSEETNGIPTTLLSPVIVTIDNIME 314 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 110/317 (34%), Gaps = 31/317 (9%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 IG + + + + + V +++ K P +L++ D Q + + Q Q++ L Sbjct: 44 CGPNKSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFL 103 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 + V L ++ + A + + +PV+ ++ + + +V D++ Sbjct: 104 TQQVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGE-----KFTSFVSGDNRAIA 158 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 G A +L+G P A R ++ K + + Sbjct: 159 HEAGLYAASLLPDG----------GDVAILEGLPSSSPAIERLEGFKAGIS-TNPKVKII 207 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGV 258 + W +A + A L I++V +ND A GA A+K K + + G Sbjct: 208 AVQPVDWMQDKAVEVFSAMLQAH--PDIKLVYTSNDLAAAGAYIAVKQAGKLGQVKIIGT 265 Query: 259 DALP---EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 D LP + V G T + A DLAK + ++V Sbjct: 266 DGLPGPSGGIRAVAEGQWTATYVYPTG--AAEALDLAKKIL-------IDCASSVPRLVT 316 Query: 316 VPYVGVDKDNLAEFSKK 332 VP +D N E K Sbjct: 317 VPTQRIDASNAKELYAK 333 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 71/351 (20%), Positives = 143/351 (40%), Gaps = 47/351 (13%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAAD-------------------TRIGVTIYKYDDNFMS 41 M KK+L ++ ++ + A ++ ++ +T+ + FM Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 42 VVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIE 101 + + ++ +AA ++ + D+ D +KQ QI+ +++ +A+ + T ++ Sbjct: 62 GMAENFKEVGEAA-GYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLK 120 Query: 102 KARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKD 161 +A +PV + S L + D ++ G ++ + + K + Sbjct: 121 EAHDAGIPVFVIHNNVSATDL----VTSLIHVDVRQGGELKMEQVIKDCGED-------- 168 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 + ++ G G + +K E + W A + WL+ Sbjct: 169 --AKIAIMTGTLGQDTTNQICGGY-DAVLEKYPNVEVVFEGAGNWGATDAAPLAENWLAS 225 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLND 280 +I+ ++ NND MA+G V LK+ KS I V+G+DA E L V SG +A T+ D Sbjct: 226 --GKEIDAIVCNNDGMALGVVSVLKSAGKSEQIKVYGLDATNEGLKAVDSGEMAATIYVD 283 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 + + + F++ ++L GK +VP V V K+N+ E+ K Sbjct: 284 SKAEIEKAFEMLEDLKAGKKVDAE---------YKVPSVLVTKENVKEYMK 325 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 216 bits (551), Expect = 1e-54, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 115/303 (37%), Gaps = 26/303 (8%) Query: 3 KKVLTLSAVMASMLFGAAAHAAD----TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 ++ L+A+ A +L A + ++ +GV++ D F + + ++++A + Sbjct: 8 RRFWWLAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQ-KLT 66 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 + ++ + D ++Q Q++ + V A+ + D G I +A ++PV + Sbjct: 67 VRLDAGEFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIRAK 126 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 A ++ +D+ G + G+ AK +G+ Q ++ +P Sbjct: 127 EGA-----VVSHIASDNVAGGRLAGEYAAKRL----------NGRGQVAIID-QPYIQSV 170 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + L + T ++ + L K++ V A ND A Sbjct: 171 IERVRGFEEALK-PYPNIRVVARLTGDGVRDRSLKAAEDLLQSQR--KLDAVFAVNDESA 227 Query: 239 MGAVEALKAHNKSSIPVFGVDALPEALALVKSGA--LAGTVLNDANNQAKATFDLAKNLA 296 G V A++A + I V G DA EA L+ G L + D + T Sbjct: 228 FGVVSAIEAAGRKGIFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHL 287 Query: 297 DGK 299 G+ Sbjct: 288 AGQ 290 >UniRef50_C0B7M6 Putative uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B7M6_9FIRM Length = 325 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 82/348 (23%), Positives = 138/348 (39%), Gaps = 39/348 (11%) Query: 1 MNKKVLTLSAVMASMLFGAAAHA---------------ADTRIGVTIYKYDDNFMSVVRK 45 M K++L++ V A A +D +G N+ + R Sbjct: 1 MKKRLLSILMVTAMCATMAVGCGTADDTKDSSSSSKGKSDYLVGFANNSDTYNYCAKFRS 60 Query: 46 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 ++ A A + + + D+ D + QN QID + + ++ D + +E A+ Sbjct: 61 YLKD-ATEAKGISITVTDAGGDTNVQNGQIDDFIVQNANVVSAISNDLDGSIPALEAAKD 119 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 +P V F S D YD YVG+ ++++G QG+ + + Sbjct: 120 AGLPYVSFLTSVSGG--DDYDGYIYVGSPNEDAGKAQGEYLCDAFPDGAS---------- 167 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 + G P R + + L K + L + L + Sbjct: 168 ILYFTGAPNDQQYVDRKKGLEEALK-KNPNIKILDEYNVENSKDLGMSTAEDSLLSY--D 224 Query: 226 KIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQ 284 KI+ ++ ND A+G VEALK+ K SI V G+D +AL ++ G + T L DA Q Sbjct: 225 KIDAIVCQNDDGALGVVEALKSAGKLDSIQVLGIDGSDDALQSIQDGEMTMTALQDAKAQ 284 Query: 285 AKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 A+A D+ + L G AD + V +P+ V KDN+A++ K Sbjct: 285 AEAGADIFEKLKKGTDPADIED-------VNIPFKIVTKDNVADYLSK 325 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 57/259 (22%), Positives = 107/259 (41%), Gaps = 19/259 (7%) Query: 28 IGVTIY-KYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKAL 86 +G + + F S +I AK+ V+L+ ++ D + QN QI+ ++A+G K L Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSL-GVKLIQRNANADVNAQNSQIEDMIAQGAKVL 142 Query: 87 AINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLI 146 + + G + +A+ + +PV+ ++ + A D ++G++ I D + Sbjct: 143 IVAPENSDGLGPALAEAKAKKIPVLTIDRTVTGTAC--SDFIAFIGSNFYGQAQIAADDL 200 Query: 147 AKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW 206 A + Q + +L G PG+ RT ++ K + T + Sbjct: 201 ATATGS----------QAKVAILSGTPGNNVTTDRTNGFQDQVKAKYPNMTVVASQTGKF 250 Query: 207 DTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK---SSIPVFGVDALPE 263 D + M L I V A ND MA+GA++A+ A K I + +D + Sbjct: 251 DQTDGQSVMAQMLQA--NPGITAVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQQ 308 Query: 264 ALALVKSGALAGTVLNDAN 282 A+ V +G + V + Sbjct: 309 AVQDVAAGTIYADVETNPR 327 >UniRef50_C6PN50 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PN50_9CLOT Length = 333 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 67/330 (20%), Positives = 138/330 (41%), Gaps = 31/330 (9%) Query: 4 KVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMND 63 ++ S ++ + + + + IG++ + + + + I +AK +++++ D Sbjct: 19 FLILFSLIIIENIRMKNSDSVEYVIGMSQANLYEPWRISMNEEISNEAKKYKNIKIVYKD 78 Query: 64 SQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALD 123 + D +KQ ID LL G+ L +++ D V+ KA VPVV ++ A++ Sbjct: 79 AGGDTNKQKKDIDELLNSGIDLLIVSINDSEKLTPVVSKAYKS-VPVVVLDR-----AVE 132 Query: 124 SYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTT 183 Y+ + Y+G D+++ G G ++ + + + + ++G R+ Sbjct: 133 GYNYSVYIGPDNEKIGREAGKMVVDLLGNS---------EGRVIEIQGLLNSHPDIDRSK 183 Query: 184 YVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVE 243 + + + + ++ W +A+DK++ L I+++ A+ND MA+GA + Sbjct: 184 GFREAIK-QCDNIKIVRTVIGEWQKDEAEDKIEELLKEDRN--IDIIFAHNDYMALGAYK 240 Query: 244 ALKAHNKSSIPVFGVD---ALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKG 300 A ++I + GVD L LV G L GT K D A N+ + K Sbjct: 241 AAYKLGINNIKIIGVDGLTGENGGLDLVSRGILQGTFTCSTG--GKEAVDSALNILNKKK 298 Query: 301 AADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 +K + K N+ E+ Sbjct: 299 KIPKKIVLKSDK--------ITKSNVNEYL 320 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 56/291 (19%), Positives = 110/291 (37%), Gaps = 23/291 (7%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 A A D IG ++ F +++A+E+ A V+L+++ + D +KQ ++ + Sbjct: 24 ALADDITIGASLLTQQHPFYVQLKQAMEKAADDN-GVELIVSIANQDLNKQISDVEDFIV 82 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 +GV A+ ++ VD I KA+ +PV+ + +D +V TD+ G Sbjct: 83 RGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDISAEGVEVD-----AHVATDNYYGGR 137 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQ 200 I G+ +AK +G+ Q ++ P R + ++ K E + Sbjct: 138 IAGETMAKVL----------NGKGQVAIIDY-PVVQSVRDRVAGFKEAVS-KYPGIEIVA 185 Query: 201 LDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGVD 259 + +A + L +++ + D A+ +V A+K+ + V G D Sbjct: 186 IQPG-ITRPEALNTAQNILQAH--PEVDGIFGFGDDAALASVVAVKSAGMEDDVKVIGFD 242 Query: 260 ALPEALALVKSGA-LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI 309 + EA VK V + + A + G+ Sbjct: 243 GMEEARNAVKKEESFVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLP 293 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 215 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 119/312 (38%), Gaps = 28/312 (8%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLL 79 + + G + ++ F + + ++++ +A D +L++ D+Q + KQ + + L+ Sbjct: 34 STADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGD-RLVILDAQFNSLKQKNDLSDLI 92 Query: 80 AKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESG 139 + V + +N V+ + +A + VP++ + K D V +D+ +G Sbjct: 93 LQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPV--KKADEELIVCTVASDNVRAG 150 Query: 140 IIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQL 199 + +AK + + + V+L + R EL +K + + L Sbjct: 151 ELAAQALAK-----------VNPKARLVVL-HLSVNKACIDRVAGFKTEL-EKHPEMKIL 197 Query: 200 QLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SSIPVFGV 258 + A T A+ M + ++ V A ND A+G + AL + NK + + V Sbjct: 198 DVQEAQGTTEGARPVMRDLIGRY--PDLDAVFAINDPNALGVISALDSANKLDQVTIVTV 255 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY 318 D + +++G L T K + G+ K V+V Sbjct: 256 DGSQAGIKAIQAGKLHSTSAQFPREIGKIAAEKMLAHLKGEPV---------EKDVKVRV 306 Query: 319 VGVDKDNLAEFS 330 + +N ++ Sbjct: 307 ELITAENAEQYL 318 >UniRef50_C6J071 ABC-type ribose transport system n=7 Tax=Bacteria RepID=C6J071_9BACL Length = 429 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 116/311 (37%), Gaps = 24/311 (7%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 IG+++ + R + ++ + + D + Q Q + Sbjct: 106 AAGGKDDGKIVIGMSMDTLKEERWQKDRDLFTAKVEELGG-EVKVLAANGDDATQLSQAE 164 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+++GV L + + A ++EKA + + V+ +++ +D YY+ D+ Sbjct: 165 QLISQGVDVLVVIAHNAEATAPIVEKAHKEGIKVIAYDRLIRNSDVD-----YYISFDNV 219 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELN---DKG 193 G +Q + + + V + G +A + L +KG Sbjct: 220 RVGELQARAVIEAAP-----------KGNIVYIGGADTDNNAHMFKEGAMNVLKPLEEKG 268 Query: 194 IKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-SS 252 + W +A M+ L+ N N I+ V+A ND A G ++AL A Sbjct: 269 DIKIVYDQFSKDWKPEEALKNMENALTA-NNNDIQGVVAANDGTAGGVIQALNAQGMAGK 327 Query: 253 IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNK 312 IPV G DA A+ + G TV + A ++A A G+ + ++N Sbjct: 328 IPVSGQDADLAAVQRIAEGTQLMTVYKPIKSIAITAAEMAVAAAKGEEVK--ADKTVNNG 385 Query: 313 VVRVPYVGVDK 323 + VP V +D Sbjct: 386 KIDVPSVLLDP 396 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 110/335 (32%), Gaps = 34/335 (10%) Query: 3 KKVLTLSAVMASM-----LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDV 57 +++L S ++ A A V+ ++ F + ++Q D Sbjct: 21 RRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGD- 79 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +L+ D+Q KQ + + ++ + A+ +N V+ + + AR +PV+ + Sbjct: 80 RLVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPV 139 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 L V +D+ +G + + Q + +L+ + Sbjct: 140 PDADL----VLAQVASDNVAAGRLAAQALGDA-----------RPQAKVAILQYSV-NKA 183 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 R L + + + M L ++ V ND Sbjct: 184 CVDRVAGFTDVLAKSFPGATIIARQDVKGTSEATRPVMRDLLGRF--PDLDAVFPINDPG 241 Query: 238 AMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+G V A+ A + + V VD EA + +G + T A + Sbjct: 242 AIGCVSAIDAAGRSGKVLVVTVDGSREAAQFILNGGIHSTSAQFPKKIGSLAAGAAYDHL 301 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSK 331 GK +K ++VP V K N AEF K Sbjct: 302 AGKPV---------DKEIKVPVTLVTKANAAEFVK 327 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 108/312 (34%), Gaps = 27/312 (8%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKG 82 + IG ++ + +V A++Q A ++ +Q I+ +++G Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 83 VKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY-YVGTDSKESGII 141 V + + + +++ N+PV+ + + L + K + GTD+ G + Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 G+ +A+ + +L+G G + + R + G + + Sbjct: 199 VGEEVAQMYPDGCKT----------AILRGVQGQTNDDDRYNGFLD---KAGDVVDLVAE 245 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDA 260 A W+T Q + + ++V+ ND M +GA +A+ + I +F D Sbjct: 246 QHANWETDQGYTAIQNIIQA--NKDLQVIYCENDLMGIGAYQAVDEAGLTDQIKIFSYDG 303 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 + E L V G T K + GK A + Sbjct: 304 VTEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDA---------ESYIDTGCEL 354 Query: 321 VDKDNLAEFSKK 332 + +N + ++ Sbjct: 355 ITSENAKQTLEE 366 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 214 bits (546), Expect = 4e-54, Method: Composition-based stats. Identities = 54/306 (17%), Positives = 109/306 (35%), Gaps = 27/306 (8%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS--QNDQSKQNDQIDVL 78 A +I + + + F + K + K + LL+ + + +Q I+ L Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKEL-GIDLLVKTAAQETSIEQQIQIIEDL 102 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD--KAYYVGTDSK 136 + A+ I D V++ A+ + ++ + +A+ ++ D++ Sbjct: 103 IRMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNE 162 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ++ IA+ Q +L+G ++ R + + Sbjct: 163 KAAYESAGFIAREIHK----------PAQAAILEGIRSADNSRQRRVGAERAFREN-PLI 211 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + ++A W + +D S I ++ ND MA+GA++ L+ + + V Sbjct: 212 RLVARESANWKIDEGRDVTRRLFSDH--PDITLLFCANDMMALGAIQFLQESGRYGVKVA 269 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 DAL EA + SG + TV A Q LA + +G+ + VV V Sbjct: 270 AYDALEEAKRAILSGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE---------VVLV 320 Query: 317 PYVGVD 322 V Sbjct: 321 ETSLVT 326 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 73/342 (21%), Positives = 134/342 (39%), Gaps = 43/342 (12%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADT----------RIGVTIYKYDDNFMSVVRKAIEQDA 51 K + +AV + L AA + DT +IG+ + + F S + K ++ A Sbjct: 6 KKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAA 65 Query: 52 KAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 + D+Q D + QN QID + +GV + I+ VD IE+A+ + V+ Sbjct: 66 AS-IGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVI 124 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 + V TD+ ++G + + G+ +L+ G Sbjct: 125 AVDTPAKSAD-------AVVMTDAVQAGEKSCQYLFEQMG----------GKGNVLLVDG 167 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 P R T + K + + + D A L+ ++ + Sbjct: 168 TP-LQTIRDRITGCNNVVK-KFPGIKVVGQQASKNDRASGLAVTTDMLTAT--PDVQGIF 223 Query: 232 ANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKS--GALAGTVLNDANNQAKAT 288 ND A+GAV A++ +K ++ V GVD PEA+A +K GT + + Sbjct: 224 GMNDPSALGAVLAVQQAHKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKA 283 Query: 289 FDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 ++A+N+ D K A+ T + +P V +D ++++ Sbjct: 284 VEVAQNIIDNKPPAETT--------ILIPSELVTRDTVSQYK 317 >UniRef50_A5ZMP8 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZMP8_9FIRM Length = 376 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 80/366 (21%), Positives = 142/366 (38%), Gaps = 48/366 (13%) Query: 1 MNKKVLTLSAVMASM------LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M KK++ A ++ + A A +IG+++ + +E+ KAA Sbjct: 1 MKKKLVLAMAATMAITSCAVPVLADDAAAEGGKIGISMPTQSLERWNRDGSYLEEQFKAA 60 Query: 55 PDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFN 114 + + S N+ +Q + I L++ GV L I +D A TV+++A +PV+ ++ Sbjct: 61 -GYDVELTYSDNETDRQVNDIQNLISDGVNLLVIAAIDGEALNTVMDEAADAGIPVIAYD 119 Query: 115 KEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPG 174 + S +YY+ D+ G +QG + D D G+P Sbjct: 120 RLI-----KSDAVSYYISFDNYTVGTLQGQYVIDTL----DLDNAGDKTYNIEFTAGDPA 170 Query: 175 HPDAEARTTYVIKELN---DKGIKTEQL------QLDTAMWDTAQAKDKMDAWLSGPNAN 225 +A L D G + TA WDT A ++M L+ A+ Sbjct: 171 DNNAGYFFNGAYDTLKPYLDAGTLNVVSGQTDFDSVATAAWDTQTALERMQNILASYYAD 230 Query: 226 --KIEVVIANNDAMAMGAVEALKA--HNKSSIPVFGVDALPEALALVKSGALAGTVLNDA 281 +++V + +ND+ A+G +A+++ K+ + + G D LA + G + TV Sbjct: 231 GTQLDVALCSNDSTALGVTQAIESDYAGKNDVLITGQDGDEANLANIVDGKQSMTVYKAV 290 Query: 282 NNQAKATFDLAKNLADGKGAAD-------------------GTNWKIDNKVVRVPYVGVD 322 N+A T DLA+ + G D T+ + V Sbjct: 291 ANEAVVTLDLAEAMLKGDTIDDSLITNSKWDFDCAYDTESYETSEGHKCPSFLLVPTVVT 350 Query: 323 KDNLAE 328 KDN+ E Sbjct: 351 KDNMKE 356 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 74/330 (22%), Positives = 120/330 (36%), Gaps = 30/330 (9%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M+K L V+ + L +A AAD I V + + VR E AKA + Sbjct: 1 MSKLKLF-GVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVH 59 Query: 61 MNDSQNDQ-SKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 ++ D +Q QI+ ++ K A+ VD A +E+ +PVV Sbjct: 60 YIPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNV-----T 114 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 +VG D G+ G + K G+ V+L+G G Sbjct: 115 DRSAGGKFLAFVGADDYSLGLETGRYLLKEMG----------GKGNVVILEGVKGSLTNV 164 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R L + + L A + Q M+ + +I+ V+A NDAMA+ Sbjct: 165 DRVRGFNDALKE-FKDVKLLASQPANYQRLQGLQVMENLMQSH--PQIDGVLAANDAMAI 221 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 GA+EAL N+ + V G++ EA+ +KSG L + + Q +A + Sbjct: 222 GAIEALDGANRKA-KVVGINGTKEAVDAIKSGKLLASGDYNGFLQGCIGTMVAIRALRKE 280 Query: 300 GAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + K V+ N + Sbjct: 281 TIVNEVVLKP---------TVVNASNYKPY 301 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 68/336 (20%), Positives = 128/336 (38%), Gaps = 28/336 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K++L +SAV A+M A AA +G + + + + + +A+ + L Sbjct: 1 MWKRLLIVSAVSAAMSS--MALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKR-GITLK 57 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D Q Q Q + +A+GV A+ I V V+++A+ +PV ++ K Sbjct: 58 IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVK 117 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 D V D+ G + GD + K V L+G G A Sbjct: 118 --DKSLYMTTVTADNILEGKLIGDWLVKEVNGKPC---------NVVELQGTVGASVAID 166 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG-PNANKIEVVIANNDAMAM 239 R + + + + ++ + + ++ K+ M++++ N I +V A+ND M + Sbjct: 167 RKKGFAEAIKNA-PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVI 225 Query: 240 GAVEALKAHNK---SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 GA++A+K I +D +P+ + G +V N A FD + Sbjct: 226 GAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMMDGEANASVELTP-NMAGPAFDALEKYK 284 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + K+ D E +K Sbjct: 285 K--------DGTMPEKLTLTKSTLYLPDTAKEELEK 312 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 95/293 (32%), Gaps = 22/293 (7%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDV 77 + +GV++ + F +V+ I+ + + + + D ++Q +Q+ Sbjct: 43 STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVK-EGYDVEVVSGEFDVARQKNQVKD 101 Query: 78 LLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKE 137 + G A+ + D G I++A +PV + + ++ TD+ Sbjct: 102 FIVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPGAE---VVSHIATDNLG 158 Query: 138 SGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK-- 195 G + + + + + V+L R + ++ + Sbjct: 159 GGKQAAEAMIEAVGSAG---------GKVVILD-FKAAESCILRVQGFKEVIDKHNSENP 208 Query: 196 ---TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS 252 + ++ + L + + A ND A+GA AL+ NK+ Sbjct: 209 SSAITIVSELPGDGQKDKSYKAAEDALQAH--PDLAGIFAINDPSALGARAALEKANKAD 266 Query: 253 -IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG 304 + + G D P+ + + G + + + K + G+ Sbjct: 267 QVKIVGFDGQPDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKE 319 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 59/350 (16%), Positives = 112/350 (32%), Gaps = 50/350 (14%) Query: 1 MNKKVLTLSAVM-ASMLFGAAAHAAD--------------TRIGVTIYKYDDNFMSVVRK 45 M K+ L + + A + ++ +I + F Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 46 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 E+ AK + + D Q D Q Q+ + KGV A+ + ++ A G + Sbjct: 61 GFEKQAKEY-GWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNE 119 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 VPV ++ + + TD+ ++G + + K + + + Sbjct: 120 AGVPVFCVDRRGEGE------VVSTLETDNVKAGEAMAEQLVKDYGED----------VD 163 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 ++++G RT V L T + + A +L Sbjct: 164 VLIIQGVLSDTPTLDRTQGVKNVLEKYENITIVGEPSAGEYSNEAALATTKNFLET--NP 221 Query: 226 KIEVVIANNDAMAMGAVEALKAHNK-------SSIPVFGVDALPEALALVKSGALAGTVL 278 ++V+ DA+ G V ALK K + + ++ VD E L L++ G + GT Sbjct: 222 DLDVIFTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFS 281 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 T K DG + + D V +N+ + Sbjct: 282 QYPIQFGIDTVKSMKTYLDGGKVEEKVYYNGD---------VVTDENIDK 322 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 134/334 (40%), Gaps = 35/334 (10%) Query: 3 KKVLTLSAVMASMLFGAAAHAA------DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD 56 K ++ L + M+FG ++ R G T ++ F V+ I++ +A D Sbjct: 12 KMMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGD 71 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 V L+ D D KQN+QI L+ + V A+ +N +D ++ A+ +PV+ + Sbjct: 72 V-LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAP 130 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 ++L + +++ ++G++ + +K + +LL+ Sbjct: 131 IYDESL----VNCSIASNNYDAGVLCAKDMM-----------SKRDHAKIILLEH-ATAK 174 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 A R + + + + A M L ++VV+A ND Sbjct: 175 SAVERIQGFLDTIASNA-NYQVINRADCDGQIEIAMPTMKQMLK--ETPDVDVVMALNDR 231 Query: 237 MAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 A+GA+ A+++ ++ V+GVD P+ L+ +G + T + + AK L Sbjct: 232 SALGALAAIESMEIDNVLVYGVDGSPDVKELINTGLIQATAAQSPVKMGQLAYQKAKALL 291 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + K K + VP + +DN++ F Sbjct: 292 ENKKI---------EKKIEVPVELISRDNISNFE 316 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 143/316 (45%), Gaps = 26/316 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 F A AA IGV + KY+DNF +++R +E+ A D + M + Q+D Q Q Sbjct: 15 FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQV-ALLDADIFMENGQDDVELQMRQFR 73 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+ V A+ + +V +A ++ A VP+VF N+ P +VG+D Sbjct: 74 NLVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNPEPATW--PALTAFVGSDEL 131 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ESG +Q + +A + + V+L G+P + + RT V K + K Sbjct: 132 ESGTLQMEELA----------RRANYKGNVVILVGDPSNKSSVMRTEDVEKVVA-KYPDM 180 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS--SIP 254 + +Q W+ +QA + W+ ++ ANND MA+GA+ L+ K Sbjct: 181 KVVQKKIGNWERSQAATIVIEWVK--QGVDFSIIAANNDEMAIGAIMGLEKTGKKAGDYL 238 Query: 255 VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 V G+D P+ L L+ G +A +V DA QA D A +A G+ A + V+ Sbjct: 239 VGGIDGTPDGLKLMAEGKMAVSVFQDALGQANGAVDAAMRMARGETLA--------SPVI 290 Query: 315 RVPYVGVDKDNLAEFS 330 VP+ + +N +F Sbjct: 291 WVPFKLITPENRQQFE 306 >UniRef50_A9KQP6 Putative solute-binding component of ABC transporter n=4 Tax=Clostridiales RepID=A9KQP6_CLOPH Length = 355 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 130/325 (40%), Gaps = 22/325 (6%) Query: 8 LSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQND 67 + ++ + +D +GV + D + +E+ K A ++ + + ND Sbjct: 14 VVSLAGCGSKATSGKGSDKLVGVAMPTKDLQRWNQDGSNMEKQLKDA-GYEVDLQYASND 72 Query: 68 QSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK 127 Q QI+ +++ G K L I ++ + GTV+ +A+ + + V+ +++ ++S Sbjct: 73 VQTQVSQIENMISNGCKLLVIASIEGDSLGTVLAQAKKKGISVIAYDRLI----MNSDAV 128 Query: 128 AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIK 187 +YY D+ G QG+ I + G + G+PG +A + Sbjct: 129 SYYATFDNYMVGTKQGEYIKEKLNLETA-----KGPFNLEIFTGDPGDNNARFFYGGAMD 183 Query: 188 ELN---DKGIKTEQLQLD------TAMWDTAQAKDKMDAWLSGPNAN--KIEVVIANNDA 236 L D G+ + TA W T A+++MDA ++ A+ K++ V+ +ND+ Sbjct: 184 VLKPYVDGGVLVVKSGSVAFEKVATAGWSTETAQNRMDAIIASYYADGTKLDAVLCSNDS 243 Query: 237 MAMGAVEALKAHNKSSIPVF-GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNL 295 A+G AL A K P+ G D + + G + ++ D A + + Sbjct: 244 TALGVTNALTASYKGEWPIVTGQDCDIANVKNMLDGKQSMSIFKDTRTLASQVVKMVDAI 303 Query: 296 ADGKGAADGTNWKIDNKVVRVPYVG 320 G A DN VP Sbjct: 304 MKGGEAPVNDTKSYDNGNGIVPSYL 328 >UniRef50_C5RNS0 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RNS0_CLOCL Length = 360 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 177/353 (50%), Gaps = 28/353 (7%) Query: 1 MN--KKVLTLSAVMASMLFGAAAHAAD-------------TRIGVTIYKYDDNFMSVVRK 45 M +K++ S VM + ++ + +GV +Y +DD F +++++ Sbjct: 1 MKIFRKIIANSIVMVLITISLSSCNKNSITTNLNIKASNPINVGVLLYSFDDIFTALIKE 60 Query: 46 AIEQDAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA--AGTVIEK 102 +E+ PD ++ D + + S Q + I ++ + D +I K Sbjct: 61 NLEKIQNQNPDKIKFTFFDGKANLSIQQELIQKIIDMNFDLIITTFDDKKEGILENIINK 120 Query: 103 ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAAN-QGWDLNKD 161 + +N P++FFN + +Y KA + T+ ++SGI QG++I W N + D NKD Sbjct: 121 IKQKNTPIIFFNATIDPNVIKAYKKAIIINTNVEQSGIQQGNIIIDAWNTNRKSIDRNKD 180 Query: 162 GQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSG 221 +Q++LL+G P A R+ VIK +ND GIKTEQL W+ AK + + L Sbjct: 181 NILQYILLQGSPDSYAAIVRSKSVIKTINDAGIKTEQLSSIVCNWEKDCAKTSISS-LFL 239 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNK------SSIPVFGVDALPEALALVKSGALAG 275 NK++++IANNDAMA+GA+E L+ +I V G+DA+P A L+K G + G Sbjct: 240 RYGNKLDIIIANNDAMAIGAIETLQKFGYNLENNNKNIAVIGIDAIPPAQDLIKKGVMLG 299 Query: 276 TVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV--RVPYVGVDKDNL 326 +V+ D + A+ F + NL DG+ +GT++K D V +PY K L Sbjct: 300 SVIQDPHVMAETLFKVGMNLVDGRNPTEGTDYKFDETGVKLILPYQEFTKKTL 352 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 115/307 (37%), Gaps = 29/307 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 IGV++ F + ++ A+E+ AK L + D+ D +KQ Q+ + K Sbjct: 55 KGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEY-GWTLDVQDAAGDANKQLGQVQDFITK 113 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 V A+ I + A + ++IE A +PV + K +V TD+K+ G + Sbjct: 114 KVDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP------VTHVATDNKKGGQL 167 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + + + + + ++ R T L + + + + Sbjct: 168 AAEYVVNNILTEK--------KGNVAVITYSE-IESCVDRETGFTDYLKENAPDIKVVDV 218 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDAL 261 D +A D M L + I+VV D A+GA+ ++ A N ++ + G D Sbjct: 219 QNYSGDQQKAADVMQNML--LKNDNIDVVFCVGDPAAIGALSSITAANAAT-KIIGYDGN 275 Query: 262 PEALALVKS-GALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 PE +A +K G V D K T + K +G+ + + + Sbjct: 276 PEGVAEIKKGGNWVADVAQDPAGIGKTTLEAIKKHLEGEKV---------DSEILIAPYI 326 Query: 321 VDKDNLA 327 +D N Sbjct: 327 IDAKNAK 333 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 65/340 (19%), Positives = 120/340 (35%), Gaps = 35/340 (10%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 M K ++ LS V+ + L A IGV + S V + ++ KA Sbjct: 1 MRKLLVFLSVVLITGLSLA------LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKF 53 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 + D + Q ++ +A+GV +AI DP A I+KA +PV+ + + Sbjct: 54 FVPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDS 113 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 + Y+GTD+ ++G G ++ + G+ + V+ G ++ Sbjct: 114 G-----RYVYIGTDNYQAGYTAGLIMKELLG----------GKGKVVIGTGSLTAMNSLQ 158 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R + D + E + + D A+A +A L+ ++ Sbjct: 159 RIQGFKDAIADS--EIEIVDILNDEEDGARAVSLAEAALNAH--PDLDAFFGVYAYNGPS 214 Query: 241 AVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGK 299 +K K + + D P+ L VK G + T+ + + L + Sbjct: 215 QALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYMMGYLSVTVLY-LMNKI 273 Query: 300 GA-------ADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G T + V+ V +NL E+ KK Sbjct: 274 GVQNTLMMLPKVTVDGKVDYVIDTGVDVVTPENLDEYLKK 313 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 104/329 (31%), Gaps = 29/329 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAA-DTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M K + L A + G+A A I D F ++R +E+ + + L Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 60 LMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 +D Q + GV A+ I D + +E+A + VV + Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVD--- 117 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 ALD +V TD+ SG + +A+ + VLL+ G Sbjct: 118 --SALDGSGHLQFVTTDNHASGQLAARQLAELMGQR----------GRVVLLRTVAGSAS 165 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 + R I L+ + +A+ A L+ + + A N++ Sbjct: 166 TDDRARGFIDYLSANAPAISIVADVYGGGSAGKARHSASALLAKSA--DFDAIFAVNESA 223 Query: 238 AMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLA 296 G + AL+ + G D+ P L ++ + G ++ D + Sbjct: 224 TDGMLRALREAGLAGRKRFIGFDSTPFLLEGLEKKEIDGLIVQDPDRMGYLAIKAVVAAL 283 Query: 297 DGKGAADGTNWKIDNKVVRVPYVGVDKDN 325 + V+ V + N Sbjct: 284 RNRPIK--------ESVIHTGTTLVTRAN 304 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 131/332 (39%), Gaps = 36/332 (10%) Query: 5 VLTLSAVMASMLFGAAA------HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 ++ + V + LF A + G T ++ + + + IE+ +A D+ Sbjct: 1 MIAATIVACTTLFIAIGIHEKKDTRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDI- 59 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 L+ D DQ KQN+QI ++ +G+ L + VD +E + +++PV + E S Sbjct: 60 LITRDPLQDQKKQNEQIKDMINEGIDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVS 119 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 D+ + +D+ ++G+ + K K +++ + Sbjct: 120 ----DTEAVVSTIVSDNYDAGVQCAKDMMK-----------KKTSANIIIVN-QKALNSI 163 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + + ++ + + A M+ + +VV+ ND +A Sbjct: 164 NERVKGFRDTIKG-HPQYKIVEEKESAAEFEIAMKVMEKII--YEKKNYDVVMGGNDPIA 220 Query: 239 MGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +G + A++ +K+ + V+GVD P+ A++K+G L GT + A + Sbjct: 221 LGCIAAMQMTDKTDQVMVYGVDGSPDGKAMIKAGFLEGTAAQSPIKIGEKAVQTAYSYLA 280 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 G+ K V +P + DNL + Sbjct: 281 GETVK---------KHVTIPVELITADNLKFY 303 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 132/333 (39%), Gaps = 36/333 (10%) Query: 5 VLTLSAVMASMLFGAAAHAADTR------IGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQ 58 +L L+A +L G A R G T ++ + V+ + IE+ +A D+ Sbjct: 7 LLILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDI- 65 Query: 59 LLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPS 118 LL D DQ KQN+QI ++ +G++ L +N VD ++ R V ++ + Sbjct: 66 LLTRDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVK 125 Query: 119 RKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDA 178 D + TD+ ++G + + K + + + V+L P Sbjct: 126 ----DRDSVISIIETDNYQAGQLCALDMMK-----------RKDEAKIVILD-NPIQTSI 169 Query: 179 EARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMA 238 R + + D + + + A + + M L +V++ ND A Sbjct: 170 TNREQGFLDTIADNH-NYQVVYREAAAGEIEVSSHVMADLLRR--DISFDVILGGNDPTA 226 Query: 239 MGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 +GA+ AL+ + + ++G+D P+ A++ G + GT + + + A D Sbjct: 227 LGALAALQQARREEGVLIYGIDGSPDFKAILDVGYVTGTSAQSPRSIGRKAAETAYRYLD 286 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 G+ K + +P + +DNL EF Sbjct: 287 GEPV---------EKYISMPSTMITRDNLHEFE 310 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 68/313 (21%), Positives = 116/313 (37%), Gaps = 17/313 (5%) Query: 3 KKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLM 61 K+ TL + +A + + V + + F +++ IE +AKA DV + Sbjct: 2 KRFKTLKSCLAILGLVCSVSVYSAEYAVILKTLSNPFWVAMKEGIENEAKALGVDVDIFA 61 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKA 121 + S+ D Q + L+ K K +A + PA KA + + +V +++ K Sbjct: 62 SPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKN 121 Query: 122 LDSY--DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 L + ++ TD+ G I + + +++G+ G+ E Sbjct: 122 LQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEG---------GEVAIIEGKAGNASGE 172 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 AR + + + A WD +A D LS ++ ND MAM Sbjct: 173 ARRRGAREVFVKSSS-IKLVASQPADWDRIKALDVATNVLSR--NPNLKAFYVANDTMAM 229 Query: 240 GAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD- 297 G +A+ K I V G D +PEA +V L T+ D L + A Sbjct: 230 GVAQAVINAGKQGKILVVGTDGVPEARKMVSERKLTATIAQDPAMIGAKGLKLLVDAARA 289 Query: 298 GKGAADGTNWKID 310 GK KI+ Sbjct: 290 GKQIPVDVEPKIE 302 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 125/330 (37%), Gaps = 28/330 (8%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL 60 MNKK L + L +A A + +++ KAI+ AK V++L Sbjct: 1 MNKKTLF---AGVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKEL-GVEVL 56 Query: 61 MNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRK 120 D QI+ +A+ + + +DP A + KA+ +PV N + Sbjct: 57 SLSQNFDVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMNDA 116 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 A + G D G + + + K DG+ V++ G+ G+ Sbjct: 117 A--KPFVTSFTGPDVYSEGEMAAEALQKAL----------DGKGSIVIIAGQAGNGTTIG 164 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R +L G K E L A +D +A ++ +KI V AN+D MA G Sbjct: 165 RVDGFNAKLKALGSKIEVLDTVNADFDQQKALVASRDLITR-FGDKIAGVYANDDTMARG 223 Query: 241 AVEALKAH--NKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADG 298 ++A K K++ P+ G++ +A +++G + T++ + ++ +G Sbjct: 224 FIDAWKEAKSGKATPPIVGINGQKDAFESIRNGEMYATIVQSPIEDGLLAINAMADVLNG 283 Query: 299 KGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 K +P V K N+ + Sbjct: 284 KKIDARLP---------IPLTVVTKANVEK 304 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 115/336 (34%), Gaps = 25/336 (7%) Query: 1 MNKKVLTLSAVMAS-MLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQ-----DAKAA 54 M + L L + G A + I V VR+ E+ +A+ Sbjct: 1 MARVHLYLLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDG 60 Query: 55 PDVQLLMNDS--QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVF 112 V+++ + + D +Q +D +A G AL + A +++A VPVV Sbjct: 61 TRVRVIFDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVI 120 Query: 113 FNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGE 172 + D YV TD+ G + G + + + + + +L + Sbjct: 121 IDSGLD----DPNHFVKYVATDNYNGGRLAGRHLIREL------QRRRKDKPKLILFRYA 170 Query: 173 PGHPDAEARTTYVIKELNDKGIKTEQLQLD-TAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 G E R E+ ++ E L D A A + + N+++ + Sbjct: 171 VGSQATEDRERGFEDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLI-LQFGNQVDGIF 229 Query: 232 ANNDAMAMGAVEALKAHNKS-SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 A N++ A G + L+A + + + D L ++ G + G++L D + Sbjct: 230 APNESSASGTADVLRAQGLNQKVALMAFDGSKPLLQSIQQGDVIGSILQDPYRMGYLSAW 289 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNL 326 G+ +G + + +N+ Sbjct: 290 YCVRHLRGEDMNNGRREMSEG----TGEYLITAENV 321 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 124/314 (39%), Gaps = 25/314 (7%) Query: 20 AAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP-DVQLLMNDSQNDQSKQNDQIDVL 78 +IGV I + F ++ E+ A+ ++++ D+++D Q D ++ + Sbjct: 84 PKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTM 143 Query: 79 LAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDK--AYYVGTDSK 136 + G A+ ++ +D I A +PV+ +AL + + + Sbjct: 144 VTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNFE 203 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 E G + + + +L G G + RT K + + Sbjct: 204 EQGSTVANDMISRMEDG----------GKVAILAGLEGAGQSVGRTNGA-KTVFENTEGV 252 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 E + WDT +A + L+ ++ + A ND MA+ AV+AL+ + V+ Sbjct: 253 ELVAAQACDWDTEKAYEATKDILTAH--PDLKGIFACNDNMALAAVQALQEMGNKDVMVY 310 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 GVD +A A ++ G + G++ + KA ++A + GK D V + Sbjct: 311 GVDYTTDAKAAIEDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDP---------VYL 361 Query: 317 PYVGVDKDNLAEFS 330 P V +DN+A+F Sbjct: 362 PLTLVTQDNVADFE 375 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 117/346 (33%), Gaps = 37/346 (10%) Query: 1 MNKKV------LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA 54 M+K+V LTLS ++A ++G A I + D F + K E+ AK Sbjct: 1 MSKRVKWVFTVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRL 60 Query: 55 PDVQLLMNDS-QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFF 113 V+L+ + + Q ++ ++A+ A+ I D +++A + ++ Sbjct: 61 -GVELIFQGGPEFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITV 119 Query: 114 NKEPSRKAL------DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 + ++ YV +D+ E G I +AK + + Sbjct: 120 DTFIGENGQYQTGKGNADFPLAYVASDNVEGGRIAARALAKAIGE----------KGKVY 169 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 + +PG + R +E+ K L D +A ++ A + + Sbjct: 170 VSNVKPGISTTDQREQGFKEEMK-KYPGITVLATQYNDNDANKAASQLAA--ALARNPDL 226 Query: 228 EVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 V N A+GA +K K + V D + +K G + V + Sbjct: 227 AGVFGANLFSAIGAANGVKNAGKRGAVKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGR 286 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + A +G+ + Y +D+ N+ K Sbjct: 287 IAVEWAVKALNGEKIPNRYG---------TGYTVIDRANVDSAEAK 323 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 62/357 (17%), Positives = 136/357 (38%), Gaps = 55/357 (15%) Query: 1 MNK----KVLTLSAVMASMLFGA-----------AAHAADT-----------RIGVTIYK 34 M K ++L+L + A A+ +T +IG + Sbjct: 10 MKKKRALRILSLILLCALTFTACKKNVGTPEDNAASKDENTEEKDKDEQESWKIGFSGID 69 Query: 35 YDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPA 94 ++ + + AI+++ + +L++ D + D Q QI ++ +G+ A+ ++ VD Sbjct: 70 MENPYFLTLESAIKEEV-DGKNCELIVKDPKTDPDMQASQIQEMIDEGINAIILSPVDWE 128 Query: 95 AAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQ 154 +E + +V +V + + Y+G+D+ +G++ G+ + K Sbjct: 129 KITPSLEALKEADVKIVNVDTQVKE----MDYVDAYIGSDNYNAGVLCGEDLIKRCPDG- 183 Query: 155 GWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDK 214 + +L+ P R T + L E + + + ++ + Sbjct: 184 ---------GKVAILEC-PTQNSVNERITGFEETLAKAENGFEIVAREDTSGEFQKSLEA 233 Query: 215 MDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVK--SGA 272 LS + I ++ ND MA+GA A+ + I ++GVD P+ +K Sbjct: 234 AQKILS--ENSDIVAIMCGNDQMAVGAKTAMNVAEQGQILIYGVDGSPDIKKELKKTENQ 291 Query: 273 LAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 +AGTV + K + N+ +GK K ++ ++++N+ + Sbjct: 292 IAGTVAQSPISMGKDAANTVLNILNGKDY---------EKEIKENVFMINQENVDMY 339 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 56/293 (19%), Positives = 108/293 (36%), Gaps = 10/293 (3%) Query: 21 AHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLA 80 + +G + + + +I+Q A+ A ++L ++++ Q Q I +A Sbjct: 37 SGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDA-GIELQFSNAELKQENQIRAIRSFIA 95 Query: 81 KGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGI 140 + V +A + + V+++A+ +PV+ +++ D +GTDS G Sbjct: 96 QKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTN--DDSLYIMRIGTDSVREGR 153 Query: 141 IQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK--TEQ 198 + + + + +KG G E R T + K E Sbjct: 154 EAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNKDAYEI 213 Query: 199 LQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPV 255 L + + K M L +KI+++ A ND MA+GA+EA++A I + Sbjct: 214 LVAQNSTFQKDGGKQVMTEMLKNYK-DKIDILFAQNDDMALGAIEAIEAAGLKPGQDIVI 272 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 D + G TV + Q ++AK + G+ K Sbjct: 273 VSCDGTRAIFQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFVK 324 >UniRef50_C2AIY5 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Tsukamurella paurometabola DSM 20162 RepID=C2AIY5_TSUPA Length = 366 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 137/342 (40%), Gaps = 39/342 (11%) Query: 7 TLSAVMASMLFGAAAHAADT--------RIGVTIYKYDDNFMSVVRKAI--EQDAKAAPD 56 A+ A+ L A+++ I + + + K + ++ A+ Sbjct: 16 LAVALGAASLTACNANSSQKSGDAGGGNTIALLLPESKTTRYEAFDKPLFEKKVAELCSS 75 Query: 57 VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE 116 ++ ++ D++KQ+ Q++ + G KA+ + V+ AG ++ A+ +PV+ +++ Sbjct: 76 CKVSYYNADQDEAKQSQQVETAITAGAKAIVLGPVNGDGAGGMVASAKNAKIPVIAYDRF 135 Query: 117 PSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 176 + YY+ D+++ G IQG + G+ ++L G P P Sbjct: 136 IAGAD-------YYLSFDNEQVGRIQGKSLVDALG----------GRGNILMLNGAPSDP 178 Query: 177 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDA 236 +A + GI+ + D W +A+ + LS + I+ V A ND Sbjct: 179 NAAQFKAGARSVIGQSGIRV-IGEYDNPDWSPDKAQQFVTDQLSRNKPSDIQGVYAANDG 237 Query: 237 MAMGAVEALKAHNKSS---IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 A G V AL S+ P+ G DA A+ + +G + TV +A ++A Sbjct: 238 QAGGVVAALTGAGVSADALPPITGQDAELAAVQRIVAGRQSMTVYKPIAIEANTAAEVAV 297 Query: 294 NLADGKGAADGT-------NWKIDNKVVRVPYVGVDKDNLAE 328 LA GK T +K + + P + V K N+A Sbjct: 298 ALATGKDVPTTTASGIQRSTFKDVSSYIFTP-IAVTKANVAS 338 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 65/312 (20%), Positives = 127/312 (40%), Gaps = 27/312 (8%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQID 76 A IGV++ ++ F +++ A +L++ ++ + S+Q +Q+ Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAAD-EGYELVVLNANGNSSQQVNQVQ 77 Query: 77 VLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSK 136 L+ + V A+ + D A + +A+G N+PV+ ++ P D ++G+DS Sbjct: 78 NLVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQG------DVTTFIGSDSV 131 Query: 137 ESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKT 196 ++ D +AK G+ ++KG G R+ L +K Sbjct: 132 KASTELCDYLAKQMG----------GKGNLAIIKGVLGSSTEIERSKGCGSIL-EKNPDI 180 Query: 197 EQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVF 256 + + A WD +A + L+ +++ + A ND MA+GA +A +S++ + Sbjct: 181 KVVSTTNADWDENKAYNVAQDVLTA--NPELQAIFAQNDGMALGAAKAAAQAGRSNLKIV 238 Query: 257 GVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 VD P+ ++SG + T+ + + A G+ K Sbjct: 239 SVDGFPQVYDAIESGQVLATMSQEPYQMGELAVRTAIKAMSGE-------AGSIQKEQLQ 291 Query: 317 PYVGVDKDNLAE 328 P V V K+NL E Sbjct: 292 PTVLVTKENLEE 303 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 64/326 (19%), Positives = 113/326 (34%), Gaps = 24/326 (7%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLL-MNDS 64 L ++ + A + D +IG + +M +E KA + + Sbjct: 61 LPVTGIGAQIATSV-KAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTT 119 Query: 65 QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDS 124 + +Q ++ ++ + V A+ ++ D T + KA+ V V+ + Sbjct: 120 ADSVEEQVQLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLR 179 Query: 125 YDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTY 184 YY ESG +A G+ +F++L+G G +A R Sbjct: 180 TGVDYY------ESGYTMAKAVADKLG----------GKGKFIILEGPAGASNAIERLNG 223 Query: 185 VIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEA 244 + L++ E + TA + + + + I+ VIA ND A+GAV+A Sbjct: 224 INTGLSE-YEGIEIVASQTANFKRTEGMSVTENLIQQYT--DIDAVIACNDESALGAVQA 280 Query: 245 LKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG 304 L A N S + V G D +A VK G + T D A + K +G Sbjct: 281 LTAANMSDVLVCGFDGSVDATNAVKEGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEG 340 Query: 305 TNWKIDNKVVRVPYVGVDKDNLAEFS 330 V D + + Sbjct: 341 KFIPFPTAAND---PLVIADTVQNYI 363 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 210 bits (535), Expect = 7e-53, Method: Composition-based stats. Identities = 62/343 (18%), Positives = 130/343 (37%), Gaps = 42/343 (12%) Query: 3 KKVLTLSA---VMASMLFGAA------------AHAADTRIGVTIYKYDDNFMSVVRKAI 47 +K+L+L + ML G + + D IGV+ F + + I Sbjct: 4 RKILSLGIAGILAIGMLTGCSMEGPSKSDNKGGSDKKDLTIGVSTITLQHQFFIDIDEGI 63 Query: 48 EQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQN 107 ++ AK V++++ND D +KQ I+ + + V + + D +A +E A + Sbjct: 64 KEKAKEL-GVKVIVNDPDQDVAKQTSAIEDFIQQNVDGMIVLGTDNSAIVPAVEGAFEK- 121 Query: 108 VPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 +PVV + L++ + YVGT S ++G G+ K+ G G+ + Sbjct: 122 MPVVTVD-----AVLNTENITSYVGTVSYDAGKKLGEYTKKYIDEKLG------GKSEIA 170 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 ++ + R L + L +D ++ + ++ + + Sbjct: 171 IVT-DLKSQIQMQRIDGFKDALKGSA-NVKILNSQPG-YDREESLNTVENLIQS--NPDV 225 Query: 228 EVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKA 287 +++ A + +GA AL++ + + G D EA + + G + + + Sbjct: 226 DIIYATAENSVLGAKAALESAKNKDVKIVGFDLTEEASSGITDGTILAMIQQQPKEMGRL 285 Query: 288 TFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 + G+ K + VP + DK+N+ +F Sbjct: 286 AVEAVVKAIKGEKV---------EKNIPVPALLYDKENIKDFK 319 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 64/323 (19%), Positives = 122/323 (37%), Gaps = 35/323 (10%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAP--DV--QLLMNDSQNDQSKQN 72 ++ + + Y +++ + + + +A+ V + + +S +D +KQ Sbjct: 40 AAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDINKQI 99 Query: 73 DQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVG 132 + L+ K V + I P A +E+A + VV F+ +D+ ++ VG Sbjct: 100 SDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDN-----VVDTDEQVATVG 154 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK 192 D E G + D + K DG+ + V+L G G + R + + Sbjct: 155 IDQTEFGRVCADWLVKKL----------DGKGKIVVLNGIAGTANDTMRWNGAEEVFK-Q 203 Query: 193 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSS 252 E L A WD AQ K M++ LS +I+ V + AM GA++A A + Sbjct: 204 YPDIEILGSANASWDYAQGKAAMESMLSAY--PEIDGVWSQGGAMTQGAIDAFIAAGRKL 261 Query: 253 IPVFGVDALPEALALV---KSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKI 309 +P+ + AL + L+ +D DG+ Sbjct: 262 VPMTS-EGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVP------- 313 Query: 310 DNKVVRVPYVGVDKDNLAEFSKK 332 K V + V +DN+ ++ ++ Sbjct: 314 --KRVTLDIPVVTEDNVDKYYRQ 334 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 209 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 68/308 (22%), Positives = 117/308 (37%), Gaps = 30/308 (9%) Query: 22 HAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAK 81 + G T ++ F +V I + D Q++ D DQ KQN+QI L+ + Sbjct: 41 NTRKKLFGATYMTMNNEFYKIVNNQIRMQVEKNGD-QMITLDPALDQKKQNEQIKQLVKR 99 Query: 82 GVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGII 141 V A+ +N VD A + A+ +PV+ + + R L A + +D+ ++G++ Sbjct: 100 KVDAIFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDL----VAMTIVSDNYKAGVL 155 Query: 142 QGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQL 201 + K Q VLL A R + + + L Sbjct: 156 CAKEMMKQ-----------KDQANIVLLTHNAARS-AVDRINGFLDTIK-NNKNYKILAS 202 Query: 202 DTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN-KSSIPVFGVDA 260 +A K+D + I+VV+ ND AMGA+ AL + + + V+G+D Sbjct: 203 ADTQGQIERALPKVDKIIEEYQN--IDVVMGLNDPAAMGALAALDSKGAREGVLVYGIDG 260 Query: 261 LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVG 320 PE L+K G + GT A + A + G+ K + Sbjct: 261 SPEGKKLIKEGMMTGTAAQSPKQMADTAVNAAYQILQGEKV---------EKKKVISVQM 311 Query: 321 VDKDNLAE 328 + K N+ + Sbjct: 312 ITKKNVEQ 319 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 50/335 (14%), Positives = 113/335 (33%), Gaps = 34/335 (10%) Query: 8 LSAVMASMLFGAAAHAAD-----TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN 62 + + + A RIG++ + + + I A P++++ Sbjct: 19 VMLAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFT 78 Query: 63 DSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKAL 122 D++ + ++Q ++ L+KG+ L I+ + + ++ A + +PV+ +++ Sbjct: 79 DARQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKV----- 133 Query: 123 DSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEART 182 ++G D++ G G+ A+ Q + L+G G + R Sbjct: 134 KGEQYTMWIGADNRLIGRKAGEYTARWCREQQRS------PCTVIELRGLEGSTPTQERG 187 Query: 183 TYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAV 242 + + + A W +A ++VV A+ND M + A Sbjct: 188 DGFREGIA-ANPDVRIIASQNADWLAERADALARVLFEA--NPDVDVVYAHNDPMGIAAF 244 Query: 243 EALKAHNKSS--IPVFGVDA---LPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD 297 K + + I G+DA + V+ G L T + + A + + Sbjct: 245 NVAKEQGRDTDAILFIGIDALATSDGGIQAVRQGKLNVTYVYPTG--GAEAIEWALRILE 302 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + + + V N +K Sbjct: 303 --------QRETPPREIILDTEEVTTANADAMFQK 329 >UniRef50_C5RKD3 D-galactose-binding periplasmic protein n=2 Tax=Clostridium cellulovorans 743B RepID=C5RKD3_CLOCL Length = 357 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 88/346 (25%), Positives = 175/346 (50%), Gaps = 27/346 (7%) Query: 3 KKVLTLSAVMASMLFGAAAHA-------------ADTRIGVTIYKYDDNFMSVVRKAIEQ 49 K+ LTL+ + ++ + ++G+ +Y +++ ++S+++K++E Sbjct: 5 KRTLTLTITLIFIIVTLTSCGLKTIKVSSNVSTKNPIKVGILLYSFEEMYLSLLKKSLED 64 Query: 50 DAKAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA--AGTVIEKARGQ 106 K D V+ D + + + Q +D ++ K + +N+ + +I +A+ + Sbjct: 65 IEKENTDKVEFTFFDGKANSAIQYQLMDEMINKNFDLIFLNIFESKQEILEDIIYRAKQK 124 Query: 107 NVPVVFF-NKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQG-WDLNKDGQI 164 N+ ++ F + P+ + SY K + K+ +++G +I W N+ D N D + Sbjct: 125 NIALILFLSTIPNLDIMKSYSKIAIIAAALKDPPVLEGQIIVDEWKTNKKIMDKNGDNIL 184 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 Q+V+LKG+ ++ RT Y ++ + + GI+T++L W+ AKD + + L Sbjct: 185 QYVMLKGKKDSTLSDTRTKYSLETIKNAGIQTDELSTVVCNWNRETAKDAITS-LFLRYG 243 Query: 225 NKIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVL 278 KIE +IANND +A+GA+E L+ + + IPV G+DALPEA L+K G + G+V Sbjct: 244 PKIEAIIANNDTLAIGAIEGLQKYGYNKGNKSKTIPVVGIDALPEAQELIKKGFMLGSVF 303 Query: 279 NDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV--PYVGVD 322 ++ A + + NL + K +GTN+K+D+ + + P+ Sbjct: 304 HNPRILADTIYTVGMNLVNEKKITEGTNYKLDSSGIIISAPFEEYT 349 >UniRef50_C2EAM5 Rhizopine uptake ABC superfamily periplasmic solute-binding protein n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2EAM5_9LACO Length = 322 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 77/317 (24%), Positives = 139/317 (43%), Gaps = 16/317 (5%) Query: 6 LTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ 65 L+A M+ + RI V + D ++ + +I+ A + + +S Sbjct: 15 FMLAATGCGMMTNESQSGNGKRIAVLTHTNDSPLINSLTSSIKNAASEK-GATVDVYNSD 73 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 + KQ Q+ ++ A+ I VD A +I A +PVVF+N +PS+ L + Sbjct: 74 QNSEKQIKQLKKVVQNHYDAILIRPVDADTAQEMI--AIAGKIPVVFYNFQPSKSVLKA- 130 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 ++ YVG + + +G +Q + + H ++ +LKG+ G +E RT Sbjct: 131 NQDVYVGPEEEMAGRLQANYVLDH---------TSKQELNVAILKGQNG-LVSEKRTNTF 180 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + L G + D+A W+ +A+ +M+ +L +V+ +NND MA+GA++A Sbjct: 181 KETLEKSGRSVNYVFTDSANWEEEKAEHQMELFLKT--GQPCDVIASNNDDMALGAIKAF 238 Query: 246 KAHNKSSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGT 305 K +K V GVDA +A A + +G + T A Q + + A + +GK D Sbjct: 239 KRAHKKLPIVCGVDATADAKAKISTGEMGLTASQPAKIQGEKCIETALKMIEGKKITDIK 298 Query: 306 NWKIDNKVVRVPYVGVD 322 D V + + Sbjct: 299 GSTADGLYVYTNFKAIT 315 >UniRef50_B5IYU4 Putative uncharacterized protein n=2 Tax=Proteobacteria RepID=B5IYU4_9RHOB Length = 347 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 116/310 (37%), Gaps = 24/310 (7%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 ++TRIG+T+ N + A + + D Q D + Q DQI + ++ + Sbjct: 57 SETRIGITVLYPGSNSYQAMYAETAAAYAAELGIMATVMDPQGDPAIQFDQIQDMASQNM 116 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 A+ + A I A +P++ N + G D Sbjct: 117 DAIVVWPTSQNALIPAIRDASRSGIPIITSNSPIGEAG--RRYILGHTGPDDCALAEQAA 174 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDT 203 +++ G+ V+++G PG+ + R + +L D L T Sbjct: 175 EMLGSAIG----------GEGNIVVVEGTPGYSVSILRGNCFLDKLADDFPDVNVLDSQT 224 Query: 204 AMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK--SSIPVFGVDAL 261 A W+ +A+ M+ +L+ ++I+ V A +D MA+G V AL+A + + + + Sbjct: 225 AEWNREKAQTVMETFLTR-FGDQIDGVYAFDDGMALGVVSALQAAGRSAGDVKIVSCNQF 283 Query: 262 PEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGV 321 E +K G ++G+ + A A +A+G + + Sbjct: 284 GEGWDAMKEGWISGSGKQSPIDDAILAIQTAVRVANGIEVPALQEIERAQ---------I 334 Query: 322 DKDNLAEFSK 331 +N+ EF + Sbjct: 335 TAENVDEFER 344 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 65/300 (21%), Positives = 118/300 (39%), Gaps = 20/300 (6%) Query: 10 AVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQS 69 AV S L + +G + + + ++I+ A V+L ++D+Q Q Sbjct: 31 AVAPSSLDLKTKTYPELVVGFAQIGAESEWRTANTRSIQDTANQL-GVELALSDAQQQQE 89 Query: 70 KQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAY 129 Q I +A+GV + ++ V V + + +P++ ++ + + + Sbjct: 90 NQIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEVKQAGIPLILLDRNAN---VPDDLYSV 146 Query: 130 YVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL 189 +G+D E G +A+ DGQ V+L+G G R T + L Sbjct: 147 RIGSDFVEEGRRACGEMARLL----------DGQGAIVVLEGTQGSAPMIGRGTGFQECL 196 Query: 190 NDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHN 249 + + + A+ K++M A L N I+ V A ND MA+GA+EA++ + Sbjct: 197 -QSYPALHIIDSQSGDFIRARGKEEMAALLQKH-GNSIDGVFAQNDDMALGAIEAIEEYG 254 Query: 250 KS---SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTN 306 I + +DA+ A + G L T+ + F A NLA+G Sbjct: 255 LRPGVDIKIVSIDAVRAAFEAMIDGKLNATIECNP-LLGPLFFATALNLANGIPVEKWIK 313 >UniRef50_C0C0Y2 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0Y2_9CLOT Length = 341 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 67/348 (19%), Positives = 134/348 (38%), Gaps = 40/348 (11%) Query: 2 NKKVLTLSAVMASMLFGA----------------AAHAADTRIGVTIYKYDDNFMSVVRK 45 +K+ +S+V+A ++F + + + T +GV+ + + + Sbjct: 6 KRKLRLISSVLAVLVFLSGCGQDFHKEGEQDDVISKDDSLTVVGVSQIGSESVWRTANTA 65 Query: 46 AIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARG 105 +I+ L+ ++++ Q Q + +++ V + + + TV+++A+ Sbjct: 66 SIQNTFSKENGYFLIFDNARQKQENQIKALRSFISQQVDYIVFSPIVEDGWDTVLQEAKD 125 Query: 106 QNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQ 165 +PV+ +++ K D +VG+D E G G +A H +I Sbjct: 126 AGIPVILMDRKV--KVKDESLYTAWVGSDFAEEGQNAGRWLAGHLKEEGRAGE----EIN 179 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 V+L+G G RT + + L+ A + TA+ +++M L Sbjct: 180 IVVLQGTNGSTSVIGRTEGF-DSVAAQHDNWNILEQADADFTTAKGREEMKKML--HKYE 236 Query: 226 KIEVVIANNDAMAMGAVEALKAHNK-----SSIPVFGVDALPEALALVKSGALAGTVLND 280 I+VV++ ND M GA+EA+ + I + DA AL V+ G + + + Sbjct: 237 DIDVVVSQNDDMTFGALEAIGEAGQSTGTDGGIILISFDATKSALEKVEQGIINVDIECN 296 Query: 281 ANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 Q ++ + L G A K V K N+A Sbjct: 297 P-EQGAYIEEVIRVLESGGQA---------EKEYFVSERVFTKKNVAS 334 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 127/330 (38%), Gaps = 29/330 (8%) Query: 1 MNKKVLTLSAVMASM-LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQL 59 M +L A + + G A A++ I + +D+ F + + A Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATEL-GYTT 59 Query: 60 LMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSR 119 L+ +D +KQN I+ +A+ KA+ ++ A ++KA+ +P ++E + Sbjct: 60 LVASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINE 119 Query: 120 KALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAE 179 + + +++ + + + G+ +++ L G +A Sbjct: 120 TGI----AVSQIVSNNYQGAQLGAEKFVTLMG----------GKGKYIELLGRESDTNAH 165 Query: 180 ARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAM 239 R+ +++ + + TA W +A ++M++ L I VI+ ND MA+ Sbjct: 166 VRSQGYHDVIDEH-SDMKMVAQQTANWSQTEAFNRMESILQA--NPDITGVISGNDTMAL 222 Query: 240 GAVEALKAHNKSSIPVFGVDALPEALALVK-SGALAGTVLNDANNQAKATFDLAKNLAD- 297 GA ALKA ++ + V G D + +G + TVL QA+ A Sbjct: 223 GAEAALKAAGRNDVVVVGFDGSDYVRDSIINNGNIKATVLQPGWAQAQMAVVQADQYLKT 282 Query: 298 GKGAADGTNWKIDNKVVRVPYVGVDKDNLA 327 GK + + V +D++N Sbjct: 283 GKTGLEEKQ--------LMDCVLIDENNAK 304 >UniRef50_D1PSG1 Sugar ABC transporter, periplasmic sugar-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSG1_9FIRM Length = 398 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 143/389 (36%), Gaps = 72/389 (18%) Query: 1 MNKKVLT--LSAVMASMLFGAAAHAADT---------------------------RIGVT 31 M K++L LSA M L G ++ + ++G++ Sbjct: 1 MKKRILAAALSATMIVSLAGCSSGGTSSTAESSSEAATTESTAETGSEGGSTGGQKVGLS 60 Query: 32 IYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLV 91 + + ++Q K A + ++ S ND ++Q I ++A GV L + + Sbjct: 61 MPTQSLERWNRDGSYLDQQFKDA-GYETVITYSDNDTNRQVSDIQNMIADGVDLLVVAAI 119 Query: 92 DPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWA 151 D A TV+ +A +PV+ +++ + +YYV D+ G +QG I Sbjct: 120 DGEALNTVMNEAGEAGIPVIAYDRLIMND-----NASYYVSFDNYTVGTLQGQYIVDTL- 173 Query: 152 ANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL---NDKGIKTEQLQL------D 202 N G + G+P +A + L D G Sbjct: 174 ----DLDNAAGPFNMEITAGDPADNNATYFYQGAMDVLQPYIDSGKLVVVSGQTDFDTVA 229 Query: 203 TAMWDTAQAKDKMDAWLSGPNAN--KIEVVIANNDAMAMGAVEALKA--HNKSSIPVFGV 258 TA WD+ A ++ L+ A+ +++V + +ND+ A+G +A+++ + + G Sbjct: 230 TAQWDSQTAMERAQNVLASYYADGTQVDVWLCSNDSTALGVSQAIQSDYAGSNQPIITGQ 289 Query: 259 DALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADG-------------- 304 D L + G + TV +N+A T DL K + +G + Sbjct: 290 DGDEANLKNIVDGLQSMTVYKAVSNEAVVTLDLGKAILNGDTIDESLITNSGWDFDCSYD 349 Query: 305 -----TNWKIDNKVVRVPYVGVDKDNLAE 328 T+ + + V KDN+ E Sbjct: 350 TESYFTSDGNNCPSFLLVPDVVTKDNMTE 378 >UniRef50_C7IGF5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Clostridium RepID=C7IGF5_9CLOT Length = 331 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 70/347 (20%), Positives = 137/347 (39%), Gaps = 43/347 (12%) Query: 1 MNKKVLTLSAVMASMLFGAA----------------AHAADTRIGVTIYKYDDNFMSVVR 44 M K+++++ ++ ++ F AA + + ++ D+F + + Sbjct: 1 MKKRLISVLSMSLAITFLAACGAGTPKTSDSTASGGSSSKGYKVAYIARAQSDSFAAWLA 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKAR 104 A++ +AK PD++L + D Q + +N I+ + + + + A +EK Sbjct: 61 NAVKDEAKKYPDIKLDVFDGQANDDTENSMIENAITNKYDLVIVQPNNGEAQRPYVEKVV 120 Query: 105 GQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQI 164 + + N S + A V + E + + N Sbjct: 121 KAGIHAITTNARISG-----IEGASSVDANPYEQAGVNARAAIEQIPQN----------A 165 Query: 165 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNA 224 + V+L G G+ A+ R KE +K + + A W+ +A M+ W+ Sbjct: 166 KVVVLDGPSGNFHADERRKSWQKEFFEKRPDVKIVGEQIANWNKDEAMKYMEDWIQS--N 223 Query: 225 NKIEVVIANNDAMAMGAVEALKAH-NKSSIPVFGVDALPEALALVKSGALAGTVLNDANN 283 +KI+ VI+ ND MA GA+E +K + ++ +GVD EAL L++ G + T + A + Sbjct: 224 DKIDAVISMNDNMAAGAIEVVKDNPKFKNMLAYGVDGTAEALLLIQEGKMTSTCMQSAYD 283 Query: 284 QAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFS 330 A + L G T + V+KDN+ ++ Sbjct: 284 LATKLLESGNKLLTGGEKQIDT---------DIGNPLVNKDNVQQYI 321 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 113/310 (36%), Gaps = 31/310 (10%) Query: 19 AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPD---VQLLMNDSQNDQSKQNDQI 75 A+ +I + F + +A E+ + D V+++ + + +Q + Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + + + A+ I D I+KA + VV N + + + YVG + Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANTKANGGDI-----VSYVGAQN 161 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 + G + + GQ + +L++G+ G+ +E R + L + Sbjct: 162 FDVGYSLATALFEKLG----------GQGKVILIEGKAGNSTSEERAEGFKEALKE-YPG 210 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPV 255 E L A WD A A M+ L ++I+ V+ M +G +EA+K+ + V Sbjct: 211 IELLASQPADWDRASAMTVMENCLQTY--DQIDGVLTLTKDMGLGTIEAIKSAGRDKEIV 268 Query: 256 -FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVV 314 D + ++ +K+G L + + +QA A DG Sbjct: 269 SMTFDVDDDVISALKAGDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSSQ--------- 319 Query: 315 RVPYVGVDKD 324 +P V + Sbjct: 320 IMPITVVTAE 329 >UniRef50_D1PQX4 ABC transporter periplasmic-binding protein YtfQ n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQX4_9FIRM Length = 409 Score = 208 bits (529), Expect = 3e-52, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 114/341 (33%), Gaps = 49/341 (14%) Query: 1 MNKKVLTLSAVMASMLFGAAAHAADTR------------------------------IGV 30 M K + + A + A + IG Sbjct: 46 MKKYLSAVLAASMVLSLAACGGGTASTEQTSEAADISSAATAETTDTADAGSGDLISIGF 105 Query: 31 TIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINL 90 ++ ++ + K+ + A +L D ND + Q + + + + V + I+ Sbjct: 106 AQVGHESDWRTASTKSAQDVFSEANGYELSFVDCDNDSAAQLEAVRGFIQQDVDYIIIDP 165 Query: 91 VDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHW 150 + TV+ + +PV+ ++ DS +VG++ K+ G+ G+ + Sbjct: 166 IVSTGWDTVLTECEDAGIPVIVIDRTID----DSDKYVSWVGSNFKDEGLACGEWL---- 217 Query: 151 AANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQ 210 D G+I ++++G G RT + + DK L + + A Sbjct: 218 --KAYADAKGMGEINALVIEGSTGASATIGRTDGFKE-IADKY-GWTILDSQSGDFTEAG 273 Query: 211 AKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-----SSIPVFGVDALPEAL 265 ++ M+++ + VVI ND A GA+ A+ + + DA AL Sbjct: 274 GQEVMESFCQSYAG-QFNVVICQNDNEAFGAMTAMDNAGVSYGVDGDVVLVSFDANKPAL 332 Query: 266 ALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTN 306 LV G + + A + + L G+ Sbjct: 333 QLVMDGKITANFECNPMA-APFVEQVIQQLQAGETPEKEIY 372 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 126/338 (37%), Gaps = 37/338 (10%) Query: 1 MNKKVLTLSAVMASMLFG--------AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAK 52 M KK L L + + G +A+ + I + + D + V+ E+ AK Sbjct: 1 MLKKRLALITMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAK 60 Query: 53 AAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVV 111 A ++ ++ D + + ++ + + V + + D A +E A +P+V Sbjct: 61 EAGANIIFKGPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLV 120 Query: 112 FFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKG 171 + +DS A ++ TD++++ D+ A+ + + ++ Sbjct: 121 TVD-----SGVDSDKVASFIATDNEKAASQAADVCAELIGKS----------GKVGVVNF 165 Query: 172 EPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVI 231 PG A R ++ K E L+ + D ++A + L+ ++ + Sbjct: 166 VPGVSTAVQREKGFRDGMS-KHSGIELLKTQYSQSDKSKAMAITEDILTA--NPDVKAIF 222 Query: 232 ANNDAMAMGAVEALKAHNK-SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFD 290 A N+ A+G +ALK + V DA P+ + ++ G++ ++ + + Sbjct: 223 AANNRSALGVAQALKGKGVAGKVKVVAFDADPDEIKGIEDGSITALIVQNPYKMGEEGVK 282 Query: 291 LAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAE 328 L G+ K + V K+N+ + Sbjct: 283 NVLALMKGETV---------EKRIDTGVTIVTKENIND 311 >UniRef50_C5RLD6 D-galactose-binding periplasmic protein n=1 Tax=Clostridium cellulovorans 743B RepID=C5RLD6_CLOCL Length = 349 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 172/337 (51%), Gaps = 24/337 (7%) Query: 3 KKVLTLSAVMASMLFG-----------AAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDA 51 KKV+ + A+ T +GV + +D +MS+V++++ Sbjct: 5 KKVIIFFIPFIMLFTSMNKMPNIICLQTASVRKITNVGVMFFNINDPYMSLVKQSLNNIQ 64 Query: 52 KAAPD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAA--AGTVIEKARGQNV 108 D ++ D Q++Q+ Q+ + + K L I++V+ V+ KA+ N Sbjct: 65 NEHEDTIKFTFFDGQDNQAVQDAILSSIFNKNFDLLLIDMVNSNETLVSDVVNKAQKNNT 124 Query: 109 PVVFFNKEPSRKA--LDSYDKAYYVGTDSKESGIIQGDLIAKHW-AANQGWDLNKDGQIQ 165 P++ F+ E S + SY + ++ TDS++SGIIQG +I W A D N+D +IQ Sbjct: 125 PLILFSFELSNIPQIVKSYKRVVFIATDSRKSGIIQGKIIVDKWLANKDILDRNRDDKIQ 184 Query: 166 FVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNAN 225 +++LKG P R+ Y I ++D GI TE+L WD AK M++ L + Sbjct: 185 YIMLKGNPDSKATNYRSNYSISTISDSGIATEELASRVCNWDKELAKLTMNSLLLNLSN- 243 Query: 226 KIEVVIANNDAMAMGAVEALKAHNKSS------IPVFGVDALPEALALVKSGALAGTVLN 279 K+EV+I+NNDAMA+GA+EAL+ + + IPVFGVD +PEA LV G +A TV+ Sbjct: 244 KVEVIISNNDAMAIGAIEALQKYGYNKGGKTKNIPVFGVDGIPEARELVNKGIMASTVIQ 303 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRV 316 D N A+A + + NL + + T ++ D + + Sbjct: 304 DPNELAQALYTVGINLVLNRNPIENTKYQFDKTGIAI 340 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 24/312 (7%) Query: 17 FGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQND 73 A A ++ + + + F + ++ K L+ + + D + Q Sbjct: 27 VARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIR 86 Query: 74 QIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYD-KAYYVG 132 ++ ++ V A+ + D A V++KA + VV + L S +VG Sbjct: 87 IVEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVG 146 Query: 133 TDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDK 192 D+++ + GD +AK A +++G P +A+ RT + Sbjct: 147 PDNRKGARMVGDYLAKRLKAGDA----------VGIVEGVPTTTNAQQRTAGFQDAMKAA 196 Query: 193 GIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK-S 251 G + + + + W+ + A L+ ++ ++ ND MA+GAV A++A + Sbjct: 197 G--AKVVSVQSGEWEIDKGNAVAAAMLNEY--PNLKALLCGNDNMAIGAVSAVRAAGRQG 252 Query: 252 SIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN 311 + V G D + ++K G + T A QA D A A+ Sbjct: 253 KVYVVGYDNINAIKPMLKDGRVLATADQYAAKQAVFGIDTALKAL-----AEHRKQADMT 307 Query: 312 KVVRVPYVGVDK 323 VV P V K Sbjct: 308 GVVATPVDLVTK 319 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 115/319 (36%), Gaps = 37/319 (11%) Query: 18 GAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAA--PDVQLLMND----SQNDQSKQ 71 + + + +++ + E A+ A +L ++ ++D+ Q Sbjct: 84 AITKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEGQ 143 Query: 72 NDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYV 131 + + KGV A+ ++ + A IE A ++PV N E + + +V Sbjct: 144 LSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM-------FV 196 Query: 132 GTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELND 191 G +S E G + + + + G ++ G RT + D Sbjct: 197 GPNSLEQGQLAAEWVNEKLG----------GSGDVAIVMGMAKTAVTRNRTQGFEEWFAD 246 Query: 192 KGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNK- 250 + + A WD +QAKD +L ++ + NND MA+G +EA+K + Sbjct: 247 NDSDIQVVAKQNADWDRSQAKDVAATFLKTY--PDLKAIFCNNDVMALGVIEAVKEADLT 304 Query: 251 --SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 I V G D EA +++ +A T+ + ++ G+ Sbjct: 305 LNKDIYVIGCDGQSEAYDSIRANEMAATIDTFPYYEGYMAAEVCYRSLIGQTVP------ 358 Query: 309 IDNKVVRVPYVGVDKDNLA 327 +VV P +D N+ Sbjct: 359 ---RVVFTPSKMLDSTNVD 374 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 68/338 (20%), Positives = 133/338 (39%), Gaps = 31/338 (9%) Query: 2 NKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVV----RKAIEQDAKAAPDV 57 NK + ++ F ++AA +IG+++ D + + + KA D+ Sbjct: 5 NKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDI 64 Query: 58 QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP 117 + + + + SKQ ++ L+ KG+ AL I +PA VIE+A + + V ++E Sbjct: 65 EFFVV-ASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDREL 123 Query: 118 SRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPD 177 + A + ++ D+ G + +AK G+ V+++G P Sbjct: 124 AHPAQN-----VFIAGDNAGLGRVGAQWLAKEM----------SGKGNVVVIEGLQ-IPI 167 Query: 178 AEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAM 237 + R + + L W T +A M+ +L KI+ V +D M Sbjct: 168 NKQRVDAFNDVIAG-YPNIKILDSQPGDWSTQKALSVMENFLQKH--PKIDAVWCQDDDM 224 Query: 238 AMGAVEALKAHNKSSIP-VFGVDALPEALALVKSGA--LAGTVLNDANNQAKATFDLAKN 294 G ++A++ ++ I V G + + +++SG + TV + A + LA Sbjct: 225 LKGVLKAIEESGRTDIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSPSMIA-SGIALAV- 282 Query: 295 LADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 G + V + V K+N A++ K Sbjct: 283 --HGVKHEKLGYLYHEPSRVILGADLVTKENAADYYFK 318 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 117/306 (38%), Gaps = 27/306 (8%) Query: 26 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKA 85 ++G + D + +++++A++ + +M++++ D +KQ ++ LL + + Sbjct: 71 FKVGFSELAIDGAWRVAQVDSMQKEAESR-GYEFVMSNAELDTAKQISDVEDLLTQDLDF 129 Query: 86 LAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDL 145 L I +D A IE A+ + VP + ++E + D + ++ G D Sbjct: 130 LFIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTP--GVDYICTILSNYIWQGEACADW 187 Query: 146 IAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAM 205 ++++ A+ + V + G+ G D R + K E + + Sbjct: 188 LSENGGADSY---------KIVQITGKVGGSDVRDRQAGFETGVK-KYENMEIVATQSGE 237 Query: 206 WDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKS---SIPVFGVDALP 262 W +A+ M + VV +ND MA+G V ALKA + + V +D Sbjct: 238 WSRTEAQKVMQNIIQST-GGDFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQA 296 Query: 263 EALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVD 322 EA+ + +G + + FD + + + N + +D Sbjct: 297 EAVEAIIAGEMNCIATCNPRF-GPVAFDTMEKYLNEEKLEHIINNEE---------YIID 346 Query: 323 KDNLAE 328 N E Sbjct: 347 STNAEE 352 >UniRef50_B1VWK1 Putative ABC transporter solute-binding protein n=7 Tax=Streptomyces RepID=B1VWK1_STRGG Length = 370 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 125/321 (38%), Gaps = 25/321 (7%) Query: 18 GAAAHAADTRIGVTIY-KYDDNFMSVVRKAIEQDAKAAPDVQ--LLMNDSQNDQSKQNDQ 74 G+ D +IG+ + + R IE+ + + +++ D + Q Sbjct: 37 GSEKKGDDLKIGLLLPENQTARYEKFDRPIIEKKISELTGGKGKVTYANAKQDANAQAQH 96 Query: 75 IDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTD 134 +D ++ V AL + VD A I+KA+ +PVV F++ Y D Sbjct: 97 VDTMITNKVDALIVGAVDSKAIANSIKKAKDAGIPVVAFDRLAEGP------IDAYTSFD 150 Query: 135 SKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGI 194 ++E G QG + + V++ G P+A L+ K Sbjct: 151 NEEVGRAQGTALLEALGDKA-------DGGTIVMMNGAITDPNAALFKKGAKSVLDGKVK 203 Query: 195 KTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSI- 253 + + DT W A M+A ++ +KI+ V + ND MA G + ALK S + Sbjct: 204 YGK--EYDTKEWKPENANANMEAAITALGKDKIDGVYSANDGMAGGIITALKGAGISPLP 261 Query: 254 PVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDN-- 311 PV G DA + + +G +V + ++A LA G+ K+D+ Sbjct: 262 PVTGQDAELAGVQRIVTGEQFMSVYKSYPAEGIVAAEMAVALAKGEKLDSIATSKVDSAT 321 Query: 312 ----KVVRVPYVGVDKDNLAE 328 V VP V + KDN+ + Sbjct: 322 TKGIPTVLVPVVSLTKDNIKD 342 >UniRef50_B1QV54 ABC-type sugar transport system, periplasmic component n=3 Tax=Clostridium RepID=B1QV54_CLOBU Length = 347 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 14/327 (4%) Query: 5 VLTLSAVMASMLFGAAAHAADTRI--GVTIYKYDDNFMSVVRKAIEQDAKAAPD-VQLLM 61 +L ++ + + ++G I V +YK DD +++ ++ +E+ + D + Sbjct: 14 LLCVNLIFVNTVYGKMQANGQKLINASVLLYKGDDKYINEIKMKLEKIQEKNKDKINYKF 73 Query: 62 NDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEP-SRK 120 D + QS QN Q++ +L +G + +N+VD +A +VI K + N+PV+ F +EP S + Sbjct: 74 YDGEKKQSVQNSQLEQILKEGTDLILLNIVDMNSAESVINKIKMSNIPVILFTREPVSLE 133 Query: 121 ALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEA 180 ++ SY KA ++GTD E+GIIQG +I + W +D N + Q++ +KGE + + + Sbjct: 134 SIKSYGKALFIGTDGAEAGIIQGKIINQAWKEKGIYDKNNNDVFQYIFIKGEKDNIETQL 193 Query: 181 RTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMG 240 R+ YVI L + GI T ++ + WD AK + + L N IE +I NND MA G Sbjct: 194 RSNYVIMSLKNYGINTLEIASEYCNWDKNYAKLVVKS-LFLRYGNSIEGIICNNDEMAEG 252 Query: 241 AVEALKAHNK-------SSIPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAK 293 ++EAL ++I V G+D L AL L+K + GTV+ + + A A + + Sbjct: 253 SIEALHEFGYNMGNLNNNNIIVVGIDGLDAALELIKKKEMTGTVVQNIDEMANALYVVGN 312 Query: 294 NLADGKGAADGTNWKIDNK--VVRVPY 318 NL GK T +K D+ +R+PY Sbjct: 313 NLVQGKDPLYDTKYKFDSSGVAIRIPY 339 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 66/346 (19%), Positives = 142/346 (41%), Gaps = 28/346 (8%) Query: 1 MNKKV---LTLSAVM-----ASMLFGAAAHAAD--TRIGVTIYKYDDNFMSVVRKAIEQD 50 M K++ L+++ VM ++ AA+ D I + +++ + E+ Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEK- 59 Query: 51 AKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPV 110 A+ ++++ + D D ++Q + I ++ G + I+ VDP+A T +++A + V Sbjct: 60 AEKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEV 119 Query: 111 VFFNKEPSRKALDSYDK---AYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFV 167 + + VG E G D+ A+ D + Sbjct: 120 CALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEAL----------DRSGKIA 169 Query: 168 LLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKI 227 +++G PG D E R + +E N + E + W +A M + ++ Sbjct: 170 IIEGTPGMSDTEGRKKGIDEE-NKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQS--NPEV 226 Query: 228 EVVIANNDAMAMGAVEALKAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAK 286 E+VI ++D MA+GA +AL+ + + + + G+ +AL L+K G + GT++ +A Sbjct: 227 ELVICHSDNMAVGAAKALEDADMTDKVKIVGIGGSKDALDLIKKGEIYGTIMYVPETEAY 286 Query: 287 ATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK 332 + + G+ + D + ++N+ +F+ + Sbjct: 287 TALEATAKVVRGEAEKETFYNVQDLPLFAETGDVCTQENVDKFTAE 332 >UniRef50_A0QT42 ABC transporter n=2 Tax=Actinomycetales RepID=A0QT42_MYCS2 Length = 365 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 30/327 (9%) Query: 24 ADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGV 83 A +G+ + + + KA + + Q QI+ ++ KGV Sbjct: 37 AKGTVGIAMPTKSSERWVADGQNMVDQFKAL-GYDTDLQYGDDVVQNQVSQIENMITKGV 95 Query: 84 KALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQG 143 K L I +D ++ ++ A +PV+ +++ + YY D+ + G++Q Sbjct: 96 KLLVIAPIDGSSLTNTLQHAADLKIPVISYDRLIKGTP----NVDYYATFDNTKVGVLQA 151 Query: 144 DLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKEL---NDKGIKTEQLQ 200 + I + G L G P +A + L D G + Sbjct: 152 NYIVDTLG-----VADGKGPFNLELFAGSPDDNNATYFFQGAMSVLQPYIDSGKLVVKSG 206 Query: 201 LDTAM------WDTAQAKDKMDAWL-SGPNANKIEVVIANNDAMAMGAVEALKAHNKSS- 252 T WD A+ +MD L + +++ V++ D ++ G + ALK+ + Sbjct: 207 QTTFDQIATLRWDGGLAQSRMDNLLSQAYTSGRVDAVLSPYDGISRGVISALKSAGYGNA 266 Query: 253 ----IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWK 308 V G DA ++ + +G TV D AKA A + G Sbjct: 267 AKPLPIVTGQDAELASVKSIVAGEQTQTVFKDTRELAKAAVQEADAVLTGGTPQVNDTET 326 Query: 309 IDNKVVRVPYVG-----VDKDNLAEFS 330 DN V VP VDK N + Sbjct: 327 YDNGVKVVPSYLLDPVSVDKSNYKKVL 353 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 112/324 (34%), Gaps = 29/324 (8%) Query: 7 TLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQ- 65 + + G R+ + + D F + + A+ +L + + Sbjct: 28 VFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKL-GARLNVQGPEE 86 Query: 66 NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSY 125 + Q ++ ++ A+ I D A I+ A Q++PVV + ++ + Sbjct: 87 FSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEEI--- 143 Query: 126 DKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYV 185 + +D+ E G + G+ +A+ G+ + +L+ +PG + R Sbjct: 144 -ALARISSDNVEGGRMAGEALAEQIG----------GKGKVLLISVKPGISTTDQRKQGF 192 Query: 186 IKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEAL 245 + + + E L + D QA + L + + N GA + Sbjct: 193 EEAIK-QYPDIEYLGTEYCNDDPTQAASITTSTLQAH--PDLAGIFGANVFSGQGAGTGV 249 Query: 246 KAHNKSS-IPVFGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLAD-GKGAAD 303 + K + V DA P + ++ G L + N+ + +A + G+ Sbjct: 250 RQAGKRDQVSVVAFDASPTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEP-- 307 Query: 304 GTNWKIDNKVVRVPYVGVDKDNLA 327 +NK + + V +DNL Sbjct: 308 ------ENKQITTGFTTVTRDNLD 325 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 57/314 (18%), Positives = 113/314 (35%), Gaps = 29/314 (9%) Query: 16 LFGAAAHAADTRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQI 75 ++ + +IG T ++++ ++ + I + D L+ D KQ ++I Sbjct: 34 VYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGD-TLITRDPALSLDKQIEEI 92 Query: 76 DVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDS 135 + V A+ IN VD + A+ D A V +D+ Sbjct: 93 YDFIDLKVDAIFINPVDWVGIRNALIDAQKAG----IIIIAIDTDIYDDDLTACTVVSDN 148 Query: 136 KESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIK 195 ++G++ + + NK +LL+ A R + Sbjct: 149 YKAGVLCAEDLM-----------NKRNSANIILLEH-KSAKSAIDRINGFEDAIR-NNKN 195 Query: 196 TEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPV 255 + + A ++ L ++ ++A ND A+G + AL+ N I V Sbjct: 196 FKVVARSDCDGQLETAMPVVENIL--LKQKDVDTIMALNDPSALGGIMALEEKNIKGINV 253 Query: 256 FGVDALPEALALVKSGALAGTVLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVR 315 +G+D P+ +VK ++ TV + + + N+ GK +K + Sbjct: 254 YGIDGSPDGKKMVKEDKMSATVSQSPRKIGRISGESLYNIFQGKEV---------DKKIV 304 Query: 316 VPYVGVDKDNLAEF 329 VP + K+N+ EF Sbjct: 305 VPVELITKENIDEF 318 >UniRef50_A7NMH5 ABC-type sugar transport system periplasmic component-like protein n=2 Tax=Roseiflexus RepID=A7NMH5_ROSCS Length = 372 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 73/362 (20%), Positives = 138/362 (38%), Gaps = 54/362 (14%) Query: 1 MNKK---VLTLSAVMASMLFGAAA---------------------HAADTRIGVTIYKYD 36 M ++ + ++ ++A+++ IG++ Sbjct: 1 MKRRQFALFAITLMLATLIAACGGTPTTTAPTAAPAPQPTTAPAPEGRKFTIGISNPFIS 60 Query: 37 DNFMSVVRKAIEQDAKAA--PDV--QLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVD 92 + + + +++ + K + +L++ + D + Q Q+ L+ KGV A+ +N D Sbjct: 61 SEYRTQMIQSLIEVNKEYMERGITNELVIESADTDVAGQIQQLQNLINKGVDAILVNPSD 120 Query: 93 PAAAGTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAA 152 +++A + + V+ ++E + Y VG D KE I +A+ Sbjct: 121 VNGLNDTLQEAINKGIIVISVDQELNTPG------VYNVGIDQKEWAKISARWLAEKLG- 173 Query: 153 NQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAK 212 GQ VL++G PGHP AR V + L + + L +T WD A + Sbjct: 174 ---------GQGNIVLIEGFPGHPANVARMEGVEEVLKE-YPNIKVLGRETGKWDEATGQ 223 Query: 213 DKMDAWLSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALAL----V 268 M +L+ ++ D MA+GA++A+ A N S PV + + L L + Sbjct: 224 QVMSNFLASF--PNLDGYWTQ-DGMAIGAMQAVMAANPSKWPVLVGEGRCQFLQLWDQRL 280 Query: 269 KSGALAGTVLN-DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPY-VGVDKDNL 326 K T+ + + +A N+ GK + +P V V KDN Sbjct: 281 KEDPNFETIAVANPPGVSPTGLRIAINMLQGKQVDKSKLGGANGLSFVIPVPVIVTKDNF 340 Query: 327 AE 328 E Sbjct: 341 QE 342 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 63/350 (18%), Positives = 135/350 (38%), Gaps = 44/350 (12%) Query: 1 MNKK------VLTLSAVMASMLFGAAAHA----------ADTRIGVTIYKYDDNFMSVVR 44 M KK + L ++ L+ + R+G + + D+ + + Sbjct: 1 MFKKHWCLIVIFILCTLLGITLYNTSNQPVSWVPESIDTPGLRVGFSQIETDNPWRTAQI 60 Query: 45 KAIEQDAKAAPDVQLLMNDSQ-NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 103 + + A + + ++ + Q + I L+ + V L I D A+ V++ A Sbjct: 61 NSFRE-ALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDYLVIVPADLASLAPVLQDA 119 Query: 104 RGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQ 163 + ++PV+ ++ S + +D + D + G I DL+A+ + D Sbjct: 120 KEADIPVILIDQ--SAETIDQSYYISLISADYLKEGQICADLLAEKFG---------DTP 168 Query: 164 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWL--SG 221 + V + G P A+AR+ + L + E + ++ +D A+ M+ L + Sbjct: 169 CRIVEIYGTESSPGAQARSKGFHQAL-QQYPNMEIIDIEYGNFDRVTAQKAMENALIKAS 227 Query: 222 PNANKIEVVIANNDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKSGALAGTVLN 279 + I+ V A++D +GA++A+K I + ++ + + + +G GTV + Sbjct: 228 TSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVCKAIIAGEYLGTVES 287 Query: 280 DANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEF 329 + L + G V +PY + +N AE+ Sbjct: 288 NPRW-GFIVASLIQQKERGYKPF---------PTVMIPYRIITAENAAEY 327 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.315 0.170 0.474 Lambda K H 0.267 0.0518 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,129,165,987 Number of Sequences: 3077464 Number of extensions: 100238374 Number of successful extensions: 315748 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2343 Number of HSP's successfully gapped in prelim test: 5895 Number of HSP's that attempted gapping in prelim test: 295601 Number of HSP's gapped (non-prelim): 9069 length of query: 332 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 203 effective length of database: 643,403,500 effective search space: 130610910500 effective search space used: 130610910500 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 94 (40.5 bits)