BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (532 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Ta... 1094 0.0 UniRef50_D0LHL3 Sigma 54 interacting domain protein n=17 Tax=Pro... 622 e-176 UniRef50_C9CUI7 Transcriptional regulatory protein RtcR n=1 Tax=... 224 5e-57 UniRef50_C0AY61 Putative uncharacterized protein n=1 Tax=Proteus... 191 4e-47 UniRef50_A5GFE4 Two component, sigma-54 specific, transcriptiona... 172 4e-41 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 170 1e-40 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 169 2e-40 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 169 3e-40 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 169 3e-40 UniRef50_B8DQZ7 Two component, sigma54 specific, transcriptional... 168 5e-40 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 167 1e-39 UniRef50_Q1NUE1 Helix-turn-helix, Fis-type n=4 Tax=Deltaproteoba... 167 1e-39 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 167 1e-39 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 166 3e-39 UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional... 165 3e-39 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 165 3e-39 UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobac... 165 4e-39 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 165 4e-39 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 164 6e-39 UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC ... 164 7e-39 UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Ac... 164 9e-39 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 164 9e-39 UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=... 164 1e-38 UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=... 163 1e-38 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 163 2e-38 UniRef50_C7LU15 Two component, sigma54 specific, transcriptional... 163 2e-38 UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fi... 163 2e-38 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 162 2e-38 UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing p... 162 2e-38 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 162 2e-38 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 162 3e-38 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 162 3e-38 UniRef50_A3WGS6 Sigma-54 dependent DNA-binding response regulato... 162 3e-38 UniRef50_B2T4G6 Sigma54 specific transcriptional regulator, Fis ... 162 3e-38 UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bactero... 162 3e-38 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 161 7e-38 UniRef50_A6KXD6 Two-component system response regulator n=40 Tax... 161 7e-38 UniRef50_C1SHS7 Response regulator with CheY-like receiver, AAA-... 160 8e-38 UniRef50_Q8ABU5 RteB, two-component system response regulator n=... 160 9e-38 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 160 1e-37 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 160 1e-37 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 160 1e-37 UniRef50_A0R926 Sensory box sigma-54 dependent DNA-binding respo... 160 1e-37 UniRef50_B8KX17 Two component, sigma54 specific, transcriptional... 160 1e-37 UniRef50_C7LSX1 Two component, sigma54 specific, transcriptional... 160 1e-37 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 160 1e-37 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 160 1e-37 UniRef50_Q6MPP3 Nitrogen assimilation regulatory protein n=1 Tax... 160 2e-37 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 159 2e-37 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 159 2e-37 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 159 2e-37 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 159 3e-37 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 159 3e-37 UniRef50_A6VTM3 Putative PAS/PAC sensor protein n=1 Tax=Marinomo... 158 4e-37 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 158 5e-37 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 158 5e-37 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 158 5e-37 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 158 6e-37 UniRef50_A4SI13 Two-component system lateral flagellar response ... 157 6e-37 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 157 8e-37 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 157 8e-37 UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional... 157 8e-37 UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammapro... 157 9e-37 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 157 9e-37 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 157 1e-36 UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis ... 157 1e-36 UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=A... 157 1e-36 UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2... 157 1e-36 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 157 1e-36 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 156 1e-36 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 156 2e-36 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 156 2e-36 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 156 2e-36 UniRef50_C3QZU6 RteB n=5 Tax=Bacteroidales RepID=C3QZU6_9BACE 156 2e-36 UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional... 156 2e-36 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 156 2e-36 UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional... 156 2e-36 UniRef50_Q1QCZ5 Two component, sigma54 specific, transcriptional... 155 3e-36 UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regula... 155 3e-36 UniRef50_B9M8I2 Sigma54 specific transcriptional regulator, Fis ... 155 3e-36 UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional... 155 3e-36 UniRef50_B1NME5 Putative trancriptional regulator n=1 Tax=uncult... 155 3e-36 UniRef50_A7HHU4 Sigma54 specific transcriptional regulator, Fis ... 155 3e-36 UniRef50_C4S4Y6 Response regulator containing CheY-like receiver... 155 3e-36 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 155 3e-36 UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 T... 155 3e-36 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 155 4e-36 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 155 4e-36 UniRef50_A4ACX8 Propionate catabolism operon regulatory protein ... 155 4e-36 UniRef50_A1AQJ0 Two component, sigma54 specific, transcriptional... 155 4e-36 UniRef50_B9XM81 Sigma54 specific transcriptional regulator with ... 155 4e-36 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 155 4e-36 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 155 5e-36 UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional... 155 5e-36 UniRef50_C7LSB8 Putative two component, sigma54 specific, transc... 155 5e-36 UniRef50_Q1D326 Sigma-54 dependent DNA-binding response regulato... 154 5e-36 UniRef50_A9F9G3 Sigma-54 dependent transcriptional regulator n=2... 154 5e-36 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 154 6e-36 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 154 6e-36 UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=P... 154 7e-36 UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=... 154 7e-36 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 154 7e-36 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 154 7e-36 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 154 7e-36 UniRef50_B4UM36 Two component, sigma54 specific, transcriptional... 154 7e-36 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 154 7e-36 UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional... 154 8e-36 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 154 8e-36 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 154 9e-36 UniRef50_A3WNQ8 Response regulator containing CheY-like receiver... 154 9e-36 UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobac... 154 9e-36 UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional... 154 1e-35 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 154 1e-35 UniRef50_B1ZWK8 Putative two component, sigma54 specific, transc... 154 1e-35 UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4... 154 1e-35 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 154 1e-35 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 154 1e-35 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 153 1e-35 UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteo... 153 1e-35 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 153 1e-35 UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria... 153 1e-35 UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fi... 153 1e-35 UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional r... 153 2e-35 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 153 2e-35 UniRef50_Q2BPF2 Helix-turn-helix, Fis-type protein n=1 Tax=Neptu... 153 2e-35 UniRef50_A1K9Z2 Probable transcriptional regulatory protein n=2 ... 153 2e-35 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 153 2e-35 UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5... 153 2e-35 UniRef50_B3E8T0 Two component, sigma54 specific, transcriptional... 153 2e-35 UniRef50_Q1LCB8 Sigma-54 factor, interaction region n=73 Tax=Pro... 152 2e-35 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 152 2e-35 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 152 2e-35 UniRef50_Q30WQ5 Two component transcriptional regulator, Fis fam... 152 2e-35 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 152 2e-35 UniRef50_C1AEP0 Fis family transcriptional regulator n=1 Tax=Gem... 152 3e-35 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 152 3e-35 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 152 3e-35 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 152 3e-35 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 152 3e-35 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 152 3e-35 UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=P... 152 3e-35 UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis ... 152 3e-35 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 152 3e-35 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 152 3e-35 UniRef50_A0LGU2 Two component, sigma54 specific, transcriptional... 152 4e-35 UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis F... 152 4e-35 UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 ... 152 4e-35 UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC ... 152 4e-35 UniRef50_Q0AAS7 Sigma54 specific transcriptional regulator, Fis ... 152 4e-35 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 152 4e-35 UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Az... 152 4e-35 UniRef50_B8IB91 Two component, sigma54 specific, transcriptional... 152 4e-35 UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptiona... 152 5e-35 UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodop... 151 5e-35 UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 151 5e-35 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 151 5e-35 UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostri... 151 5e-35 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 151 5e-35 UniRef50_A4JRG9 Two component, sigma54 specific, transcriptional... 151 5e-35 UniRef50_A4J4M8 Two component, sigma54 specific, transcriptional... 151 5e-35 UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1... 151 6e-35 UniRef50_C0GUD7 Two component, sigma54 specific, transcriptional... 151 6e-35 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 151 6e-35 UniRef50_A6G0X1 Sigma-54 dependent transcriptional regulator n=2... 151 6e-35 UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional... 151 6e-35 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 151 6e-35 UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transc... 151 6e-35 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 151 7e-35 UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional... 151 7e-35 UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio b... 151 7e-35 UniRef50_A8V0D6 Sigma 54-dependent transcriptional activator con... 151 7e-35 UniRef50_Q4ZY83 Response regulator receiver:Sigma-54 factor, int... 151 8e-35 UniRef50_C4XRF4 Response regulator n=9 Tax=Desulfovibrionales Re... 151 8e-35 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 151 8e-35 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 150 8e-35 UniRef50_Q46802 Uncharacterized sigma-54-dependent transcription... 150 8e-35 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 150 8e-35 UniRef50_A6W2X2 Two component, sigma54 specific, transcriptional... 150 8e-35 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 150 8e-35 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 150 9e-35 UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional r... 150 9e-35 UniRef50_B0TS74 Putative sigma54 specific transcriptional regula... 150 9e-35 UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 150 9e-35 UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional... 150 9e-35 UniRef50_B4SIJ8 Sigma54 specific transcriptional regulator, Fis ... 150 9e-35 UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional... 150 1e-34 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 150 1e-34 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 150 1e-34 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 150 1e-34 UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulato... 150 1e-34 UniRef50_C4XN49 Fis family transcriptional regulator n=4 Tax=Des... 150 1e-34 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 150 1e-34 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 150 1e-34 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 150 1e-34 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 150 1e-34 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 150 1e-34 UniRef50_A9G5P2 Sigma-54 dependent transcriptional regulator n=2... 150 1e-34 UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis ... 150 1e-34 UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis ... 150 1e-34 UniRef50_B9ZLA8 Putative two component, sigma54 specific, transc... 150 1e-34 UniRef50_B1B869 Propionate catabolism operon regulatory protein ... 150 1e-34 UniRef50_A8USY5 Two component, sigma54 specific, transcriptional... 150 1e-34 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 150 1e-34 UniRef50_C9RLJ7 Sigma54 specific transcriptional regulator, Fis ... 150 1e-34 UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomy... 150 1e-34 UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulato... 150 1e-34 UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional... 150 2e-34 UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interact... 150 2e-34 UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gamm... 150 2e-34 UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=7... 150 2e-34 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 149 2e-34 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 149 2e-34 UniRef50_C6INB6 Two-component system response regulator n=4 Tax=... 149 2e-34 UniRef50_B5YG95 FrgC n=1 Tax=Thermodesulfovibrio yellowstonii DS... 149 2e-34 UniRef50_A9GME2 Sigma-54 dependent DNA-binding response regulato... 149 2e-34 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 149 2e-34 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 149 2e-34 UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2... 149 2e-34 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 149 2e-34 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 149 2e-34 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 149 2e-34 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 149 3e-34 UniRef50_C8X096 Putative two component, sigma54 specific, transc... 149 3e-34 UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphapro... 149 3e-34 UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional... 149 3e-34 UniRef50_Q5WLY7 Transcriptional regulator n=4 Tax=Bacillaceae Re... 149 3e-34 UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Brady... 149 3e-34 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 149 3e-34 UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphapro... 149 3e-34 UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator... 149 3e-34 UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional... 149 3e-34 UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 T... 149 3e-34 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 149 3e-34 UniRef50_C6C6J7 Two component, sigma54 specific, transcriptional... 149 3e-34 UniRef50_D2L101 Two component, sigma54 specific, transcriptional... 149 4e-34 UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional... 149 4e-34 UniRef50_C3PZ45 Two-component system response regulator n=3 Tax=... 149 4e-34 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 148 4e-34 UniRef50_O31551 Acetoin dehydrogenase operon transcriptional act... 148 4e-34 UniRef50_B7VNT5 Sigma-54 dependent response regulator n=10 Tax=V... 148 4e-34 UniRef50_B8FCF2 Sigma54 specific transcriptional regulator, Fis ... 148 4e-34 UniRef50_A0NV29 LuxO repressor protein n=3 Tax=Rhodobacteraceae ... 148 4e-34 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 148 4e-34 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 148 4e-34 UniRef50_C7X3X5 Nitrogen regulation protein NR(I) n=24 Tax=Bacte... 148 4e-34 UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis ... 148 5e-34 UniRef50_Q7NTB1 Putative uncharacterized protein n=1 Tax=Chromob... 148 5e-34 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 148 5e-34 UniRef50_C0GP34 Two component, sigma54 specific, transcriptional... 148 5e-34 UniRef50_C0ZBK7 Putative transcriptional regulator n=1 Tax=Brevi... 148 5e-34 >UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Tax=Bacteria RepID=RTCR_ECOLI Length = 532 Score = 1094 bits (2830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/532 (100%), Positives = 532/532 (100%) Query: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK Sbjct: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ Sbjct: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 Query: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD Sbjct: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG Sbjct: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA Sbjct: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG Sbjct: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT Sbjct: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 Query: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI Sbjct: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 Query: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS Sbjct: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 >UniRef50_D0LHL3 Sigma 54 interacting domain protein n=17 Tax=Proteobacteria RepID=D0LHL3_HALO1 Length = 576 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 319/566 (56%), Positives = 393/566 (69%), Gaps = 47/566 (8%) Query: 2 RKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKR 61 ++ V G +G+ LD GRG++RW KWRP++ LC+ E L++DRLELLH + L T++ Sbjct: 6 KRLVVIGLLGSTLDRGGRGARRWDKWRPSVALCRHEDLLVDRLELLHMPAHQRLLHTVRG 65 Query: 62 DIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQI 121 DIA VSPETEV ++L + WDFEEV+A LH+FAR YEF+P+ EDYL+HITTGTHVAQI Sbjct: 66 DIAQVSPETEVRPHALDLRDAWDFEEVFAALHEFARAYEFRPDSEDYLVHITTGTHVAQI 125 Query: 122 CWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF 181 C FLL E+R+LPARL+Q+SPP E PG IIDLDLSRY+ +ASRF +E+Q + F Sbjct: 126 CLFLLTESRHLPARLLQTSPP-GPEHRGEPGRYAIIDLDLSRYDRLASRFRQEQQDRVSF 184 Query: 182 LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA 241 LKSGI TR+P FN +IE++E+VA++SRAPILL+GPTGAGKS LAR+I EL++AR Q GA Sbjct: 185 LKSGIDTRSPAFNALIERVERVALRSRAPILLSGPTGAGKSQLARQIYELRRARRQLEGA 244 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FVEVNCATLRGD AMS LFGHV+GA+TGA R GLLR A+ GMLFLDEIGELG DEQAM Sbjct: 245 FVEVNCATLRGDAAMSALFGHVRGAYTGASRDRAGLLRQADRGMLFLDEIGELGGDEQAM 304 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+AIE+K F P G DR+ +SDFQLIAG+ RDL + VA+G+FREDL ARI+ W F LP L Sbjct: 305 LLRAIEDKRFVPVGGDREAASDFQLIAGSNRDLERAVAQGRFREDLLARIDTWWFRLPAL 364 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 R+R EDIEPNLDYE+ + G V FN EAR +L FA S +ATW GNFR+ +A++TR Sbjct: 365 RERPEDIEPNLDYELAQWTQRQGTRVTFNREARARFLHFA-SGEATWPGNFRDFNAAITR 423 Query: 422 MATFATSGRITLDVVEDEINRLRYNWQE-------------------------------- 449 MAT A+ GRIT+ V+DE++RLR WQ Sbjct: 424 MATLASGGRITIADVDDELSRLRARWQHAIPAASPQPPPSPPTPDHPSENHTVSENASID 483 Query: 450 -------------SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 S P A AL +D F+R QLE V+ +C + SLS AGR LF Sbjct: 484 RSSPEHAQQTTNPSWPRARAALGDEALAALDRFERAQLEDVLGVCALSDSLSEAGRALFA 543 Query: 497 VSRQGKASVNDADRLRKYLARFGLTW 522 VSR K NDADRLRKYLAR GL+W Sbjct: 544 VSRARKQRPNDADRLRKYLARHGLSW 569 >UniRef50_C9CUI7 Transcriptional regulatory protein RtcR n=1 Tax=Silicibacter sp. TrichCH4B RepID=C9CUI7_9RHOB Length = 307 Score = 224 bits (572), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 115/208 (55%), Positives = 143/208 (68%), Gaps = 3/208 (1%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE 100 +DRLELL+D + L KR+I + SP+TEVV ++L +PWDFEEVYA L DFARGY Sbjct: 1 MDRLELLYDFKFNRLAHAAKREIEAASPDTEVVLNRLDLSDPWDFEEVYAKLFDFARGYG 60 Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 F ++E Y IH+TTGTHVAQICWFLLAE+R++PA L+Q+ PP +++ P ++ IIDLD Sbjct: 61 FDEDRERYHIHLTTGTHVAQICWFLLAESRHVPALLLQTGPPLHEDE---PAKLDIIDLD 117 Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 L RYNA+ RF Q+ D LK GI TRN +N +I QIE VA +RAPILL G TG G Sbjct: 118 LRRYNALQHRFDLIAQEYSDLLKGGIETRNAAYNGLISQIEHVAGATRAPILLLGETGTG 177 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCA 248 K+ LA RI LK R G V VNCA Sbjct: 178 KTQLAERIHTLKLDRRMIMGRMVHVNCA 205 >UniRef50_C0AY61 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0AY61_9ENTR Length = 188 Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 87/188 (46%), Positives = 116/188 (61%), Gaps = 7/188 (3%) Query: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 M++ V G +GT LD G+ +RW+ WRPT+ +C Q+ + RL ++H L + Sbjct: 1 MKRKVVIGVLGTTLDKRGKSHKRWNSWRPTISICHQKDFPVSRLVMIHQPNDSMLASKIT 60 Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 DI ++SP+TEV EI++ +PWD EEVY+ DFA Y F E E+Y +HITTGTH+AQ Sbjct: 61 EDIHTISPDTEVWPYEIDICDPWDLEEVYSHFLDFAVNYPFDTENEEYYVHITTGTHIAQ 120 Query: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRG-------PGEVTIIDLDLSRYNAIASRFAE 173 ICWFLL EA YLPA+L+Q+SP K E G G IIDLDLSRY + SRF Sbjct: 121 ICWFLLTEAHYLPAKLLQTSPTSKIENKDGVKTIQSATGSYAIIDLDLSRYTKLTSRFEH 180 Query: 174 ERQQTLDF 181 ++L F Sbjct: 181 YHNESLSF 188 >UniRef50_A5GFE4 Two component, sigma-54 specific, transcriptional regulator, Fis family n=7 Tax=Geobacter RepID=A5GFE4_GEOUR Length = 493 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 144/250 (57%), Gaps = 10/250 (4%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 S I T + + + IE +A SR P+L+NG TG GK +AR I F GAFV Sbjct: 177 SDIVTCSDKMQALFKLIETIA-PSRHPVLINGETGVGKELIARSI----HKASGFKGAFV 231 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VN A L TLFGH KGAFTGA E+REGL+ A GG LFLDEIG++ + Q LL Sbjct: 232 PVNVAGLDDIMFSDTLFGHRKGAFTGANEAREGLIAKAQGGTLFLDEIGDMSPESQIKLL 291 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E +Y GSD V SD ++IA + +D+ L+ +GKFR+DLY R+ +P LR+ Sbjct: 292 RLLQEHEYYRLGSDALVKSDARIIAASNQDIDALINQGKFRQDLYQRLCFHELKIPPLRE 351 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+EDI P +++ V + A++ + +R ++A + + GN REL + V+R Sbjct: 352 RREDIMPLIEHYVAKAAAIYEKDIP--DFSRELYIALQ---EYDFPGNVRELISKVSRGV 406 Query: 424 TFATSGRITL 433 + G +TL Sbjct: 407 AHSRRGILTL 416 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/366 (31%), Positives = 182/366 (49%), Gaps = 29/366 (7%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-------------IATRNPHFNRM 196 G + I L ++ R A R +T+D G I ++P ++ Sbjct: 111 GAHDYLIKPFSLEELTSVLDRLA--RHRTMDTASRGLREKLRLQGGFGNIVGQSPEMEKL 168 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 + KVA ++ P+L+ G +G GK +AR I H S F+ V+C+++ Sbjct: 169 YRILSKVA-QTTHPVLILGESGTGKELVARAI---HVHGHYASKPFLPVDCSSIVPTLME 224 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGHVKGAFTGA +R+GLL +A GG +FLDEIGE+ D QA LL+A++EK P G+ Sbjct: 225 SELFGHVKGAFTGATRARDGLLVAAEGGTVFLDEIGEMPLDLQAKLLRALQEKEVRPVGA 284 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 +V + +++A T R+L ++V +G+FR DLY R+N+ LP LR+R+EDI + + Sbjct: 285 THRVKINVRILAATNRNLAEMVEQGRFRRDLYYRLNVVKLVLPPLRERREDIPLLAAHFL 344 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 +R G R + E A A + W GN RELS ++ R +F + ++ + Sbjct: 345 DRIGREYGKKFRLSAE------ALAMISEYPWPGNVRELSNALDRACSFCSGEQVQAGDL 398 Query: 437 EDEINRLRYN---WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + Q RP L AEAE + L + ++ +++ Q K + Sbjct: 399 TSPVKDFYLQHAAMQRKRPRTRAELPEAEAEVLSLAE-IEKRAILSTLAQVKGDKLLAAR 457 Query: 494 LFDVSR 499 L D+ + Sbjct: 458 LLDIGK 463 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 140/247 (56%), Gaps = 20/247 (8%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS-GAFV 243 GI + P ++ IEK+A + + +L+ G +G GK +AR I A S FV Sbjct: 146 GIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGESGTGKELVARAI----HAHGPRSRKNFV 201 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VNCA + D S LFG+VKGAFTGA +++ G L+ A GG LFLDEIG++ A QA LL Sbjct: 202 PVNCAAIPEDLLESELFGYVKGAFTGATQAKMGRLQYAEGGTLFLDEIGDMKASLQAKLL 261 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++EK F P G + VS D +++A T RDL + VAEG+FREDLY R+N+ +P LR+ Sbjct: 262 RVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKSVAEGRFREDLYYRLNVIPLQIPPLRK 321 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATS-----PQATWRGNFRELSAS 418 R+EDI +ER + +N + + + F+ Q W GN REL Sbjct: 322 RKEDI----SLLIERFVGI------YNRKKKNPFKGFSDDALQALKQYPWPGNVRELENL 371 Query: 419 VTRMATF 425 V RM+ F Sbjct: 372 VQRMSIF 378 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 149/263 (56%), Gaps = 13/263 (4%) Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R+ + + ++A SR+ +LL G +G GK +A+ I + R AFV +N ++ D Sbjct: 169 RIFDLVTQIA-PSRSTVLLQGESGTGKELIAKAI-HMNSTRK--DRAFVPINTGSMPTDL 224 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 STLFGHVKGAFT A S++GL A+GG LFLDEIG + + QA +L+ ++++ F Sbjct: 225 LESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHL 284 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G +++ D ++IA T DLRQLV EGKFREDL+ R+N+ T LP LRQR+ D+ ++ Sbjct: 285 GGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEH 344 Query: 375 EVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +++ +R EA R L + W+GN REL + R A IT+ Sbjct: 345 FIKKFCEENAKPLMRMTPEALRPLLDY------NWQGNVRELENVIERAVVLANGPSITI 398 Query: 434 DVVEDEI--NRLRYNWQESRPSA 454 D++ D + ++ E+RP A Sbjct: 399 DLLPDNVVGRGSSLSFVETRPDA 421 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 153/280 (54%), Gaps = 11/280 (3%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 +++ D +R A + EE + +F++ I +P +++ Q+++VA + + +L+ Sbjct: 627 VLMEQDKARLEAQNTYLQEEIRSQHNFVE--IVGNSPSLLQVLRQVDRVA-STDSTVLIC 683 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G TG GK +AR I + R + V+VNC + S LFGHVKGAFTGA +R Sbjct: 684 GETGTGKELIARAIHDRSPRRER---PLVKVNCGAISTGLVESELFGHVKGAFTGAIANR 740 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 EG A+GG +FLDE+GEL + Q LL+ ++E+ F P GS + V D ++IA T RDL Sbjct: 741 EGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDL 800 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEAR 394 +V EGKFR DL+ R+N+ T+P LRQR DI + +E+ A G S+ E Sbjct: 801 ETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEET 860 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 A L Q W GN REL + R +T +T++ Sbjct: 861 MARLC-----QYPWPGNIRELQNVIERAVVLSTGSLLTVE 895 >UniRef50_B8DQZ7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DQZ7_DESVM Length = 477 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 107/277 (38%), Positives = 145/277 (52%), Gaps = 11/277 (3%) Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 + A QQ F +G+ +P F ++ + K A S P+L+ G TG GK AR I Sbjct: 123 KLARTAQQGRQFNPAGLVGTSPAFMECLDLVAKAA-HSDVPVLITGETGTGKELAARAIH 181 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 E + FV V+CA L + S LFGHV+GAFTGA EGL+R A+GG LFLD Sbjct: 182 ENSD---RAGRPFVVVDCAALPENLTESVLFGHVRGAFTGADRDAEGLIRQASGGTLFLD 238 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGEL Q L+ ++E+ F P G ++V DF+L+A T RDL +V G+FREDL Sbjct: 239 EIGELSPTLQKTFLRVLQERRFRPVGGRQEVECDFRLLAATNRDLSLMVRRGEFREDLLY 298 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT-EARRAWLAFATSPQATW 408 R+ LP LRQR++D+ P ++ V ++ R T E RA +A W Sbjct: 299 RVRSMHIALPPLRQREDDLRPLSEHFVHQYCERNNLPSRILTQELLRALVAH------HW 352 Query: 409 RGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 GN REL ++ M FA R V E R+R+ Sbjct: 353 PGNVRELRNTMETMIAFAGGVRTLYPVHLPEHIRVRH 389 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 127/226 (56%), Gaps = 10/226 (4%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S +L+NG TG GK +AR I + + G ++VNCA + S LFGH KGA Sbjct: 210 SNTTVLINGETGTGKELVARAIHDRSS---RCKGPLIQVNCAAMPDTLIESELFGHEKGA 266 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA +R G A+GG +FLDE+GEL A QA LL+ I+EK F P G+ R VS D ++ Sbjct: 267 FTGALHARRGRFEEAHGGTIFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRI 326 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L + VA G FR DLY R+N++ LP LR+R DI DY V ++ + G S Sbjct: 327 IAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKS 386 Query: 387 V-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 V R + A+L+ +W GN REL + R AT I Sbjct: 387 VKRISNAVLEAFLSH------SWPGNVRELENCIERAVLLATGDSI 426 >UniRef50_Q1NUE1 Helix-turn-helix, Fis-type n=4 Tax=Deltaproteobacteria RepID=Q1NUE1_9DELT Length = 569 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 143/268 (53%), Gaps = 13/268 (4%) Query: 170 RFAEERQQTLDFLK-----SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 R +EE ++ L+ I T +P R++E+ KVA + + G +G GK L Sbjct: 207 RLSEENKKLKAHLRELYSFQNIVTASPGMQRVLEEARKVAASPLTTVAIYGESGVGKEVL 266 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 AR I + + FV VNCA + + S LFGHV+GAFTGA + R G A GG Sbjct: 267 ARAI---HFGSEKLAQNFVAVNCAGVPANLLESELFGHVRGAFTGAEQDRSGKFDQARGG 323 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 L LDEIG++ + QA LL+ +E++ + P GS+R++ +DF++I T RDL +LV G FR Sbjct: 324 TLLLDEIGDMPLELQAKLLRVLEQRRYQPLGSNREIPADFRVITATHRDLAELVDRGLFR 383 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP 404 D+Y RIN + +P LRQR EDI + RH TG E A LA T Sbjct: 384 ADIYHRINAFPLLIPPLRQRPEDIPLLAANFLARHGEQTGGR---PPELSPAALAALT-- 438 Query: 405 QATWRGNFRELSASVTRMATFATSGRIT 432 + TW GN REL + R A S ++T Sbjct: 439 RYTWPGNVRELKNRIERAVILAGSEQLT 466 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 99/271 (36%), Positives = 144/271 (53%), Gaps = 16/271 (5%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 S +E + L + I +P +++E +K+A +L+ G +G GK +A Sbjct: 120 VSDLKKELNELKSLLSTDIIAESPQMKQVLETAKKIA-PFDTTVLITGESGTGKEMIANF 178 Query: 228 ILE--LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 I + L++ R F+ +NC + + S LFG+ KGAFTGA ++GL+ A GG Sbjct: 179 IHKNSLRKER-----PFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAEGGT 233 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDEIGEL D Q LL+ ++E P GS+R D + IA T RDL+++V EGKFRE Sbjct: 234 LFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGKFRE 293 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSP 404 DLY RIN+ +P LR+R+EDI P Y + + S G R + +AR L + Sbjct: 294 DLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNY---- 349 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDV 435 ++GN REL + R A T G D+ Sbjct: 350 --DYKGNVRELENIIER-AVLTTEGEEITDI 377 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/291 (34%), Positives = 154/291 (52%), Gaps = 20/291 (6%) Query: 147 QPRGPGEVTII---DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P P ++ ++ L+++R + SR +E ++ F + I ++P + E I K Sbjct: 105 KPVDPLDIVVLVEKTLNINRMKSRLSRLQKEVEKKYHF--TNIVGQSPQMQILFESIHK- 161 Query: 204 AIKSRAPILLNGPTGAGKSFLARRIL---ELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 A KS A +L+ G +G GK A+ + LK+ G FV VNC+ T S LF Sbjct: 162 ASKSTANVLITGESGTGKELAAKAVHYNGPLKE------GPFVAVNCSAFSSGTLESELF 215 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GHVKGAFT A G AN G LFLDE+G++ AD Q LL+ +++KTF G+ + Sbjct: 216 GHVKGAFTDAHRDHMGRFELANKGTLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPI 275 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 SDF+L+A T RDL+ LV +GKFREDL+ R+N+ T P LR+ EDI + + ++R+ Sbjct: 276 HSDFRLVAATNRDLKDLVRKGKFREDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYG 335 Query: 381 SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 + G S++ + A + W GN R+L ++ A I Sbjct: 336 QVGGRSIK-----TLSMHAMKIMQEYRWPGNVRQLENAIESAAAMCDGSMI 381 >UniRef50_B5EMI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EMI3_ACIF5 Length = 461 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/297 (36%), Positives = 161/297 (54%), Gaps = 28/297 (9%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I R+P +++++ VA S+A + L+G +G+GK +AR I + R G FV V Sbjct: 145 ILHRSPAMAALVDELACVA-NSKASVFLSGESGSGKERVARAIHDASPRR---DGPFVAV 200 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + A S LFGHVKGAFTGA + GL+RSA+GG LFLDEI +L Q LL+ Sbjct: 201 NCGAIPAGLAESELFGHVKGAFTGATQDHTGLIRSASGGTLFLDEIADLPLTLQVKLLRV 260 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E + P G+ ++S D ++I+ T +D+ L A+G FREDLY R+++ +P L +R Sbjct: 261 LQEGSLRPVGAKTEISVDLRVISATHQDIHALTADGTFREDLYYRLHVIPLRVPSLSERA 320 Query: 366 EDI----EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 EDI + LD E +R + D + F+ EA + Q +W GN REL +VT Sbjct: 321 EDIPLLAQHFLDRESQR---MNRDILGFSPEALDKLM------QRSWPGNVRELENAVTF 371 Query: 422 MATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVI 478 A G + D + D N ++ SA L A+A F+R LE+++ Sbjct: 372 AAAVTEKGWVAADAIPD-------NGRQGGQSAFPPLQDAKAA----FERGYLENLL 417 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 99/238 (41%), Positives = 130/238 (54%), Gaps = 10/238 (4%) Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 R+ + Q+ +VA +R +LL G +G GK +AR I L + Q FV VNCA Sbjct: 205 RSASMQHVFAQVHQVA-PARTTVLLRGESGTGKELIARAIYRLSPRKDQ---PFVSVNCA 260 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 L S LFGH KGAFTGA+ R+G A+GG LFLDEIG++ QA LL+ ++E Sbjct: 261 ALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQE 320 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 + F G V D +LI T R+L Q+V EG+FR DLY RIN+ + LP LR+R+EDI Sbjct: 321 REFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERREDI 380 Query: 369 EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 Y + R G ++ FN EA R + W GN REL + R AT A Sbjct: 381 PEMAQYFLNRFNRENGRALHFNEEALRVLSS------CYWPGNVRELENCIERTATMA 432 >UniRef50_P0AFU5 Uncharacterized protein yfhA n=219 Tax=Proteobacteria RepID=YFHA_ECO57 Length = 444 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 99/275 (36%), Positives = 152/275 (55%), Gaps = 11/275 (4%) Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 Y AI + T + + I TR+P R++EQ VA +S +L+NG +G GK Sbjct: 114 YQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVA-QSDVSVLINGQSGTGKEI 172 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 A+ I A + S F+ +NC L S LFGH +GAFTGA +REGL ++A G Sbjct: 173 FAQAI---HNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEG 229 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G LFLDEIG++ A Q LL+ ++E+ P GS+R + + ++I+ T RDL + +A G+F Sbjct: 230 GTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISATHRDLPKAMARGEF 289 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 REDLY R+N+ + +P L +R EDI ++ + + A VR F+T+A + + Sbjct: 290 REDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMT--- 346 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 A+W GN R+L + + +S I+ +VE Sbjct: 347 ---ASWPGNVRQLVNVIEQCVALTSSPVISDALVE 378 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 165 bits (417), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 168/323 (52%), Gaps = 23/323 (7%) Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE 174 G +V + C + + Y+P +++S+ E G V + DLS + R E Sbjct: 96 GVYVRRKCSIMRKDGTYVP--ILKSASILHAEDGSTVGAVETMT-DLSELD----RKENE 148 Query: 175 RQQTLDFLKS-----GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 QQ L G+ + R+ IEK A +S AP+ + G +G GK +AR I Sbjct: 149 LQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAA-QSDAPVFIYGESGTGKELVARAIH 207 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 +L Q +V+ NCA L S LFGHVKGAFTGA R+G +A+GG +FLD Sbjct: 208 DLGPRSDQ---PYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLD 264 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIG+L Q LL+ +E KTF G +RQ+S D ++I T + L +L+++G+FREDL+ Sbjct: 265 EIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFY 324 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATW 408 RIN+ LP LR+R+EDI DY ++R + ++ + + R ++ + +W Sbjct: 325 RINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDY------SW 378 Query: 409 RGNFRELSASVTRMATFATSGRI 431 GN REL +S+ A G I Sbjct: 379 PGNVRELKSSLEYAFVLADHGHI 401 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 164 bits (416), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/258 (38%), Positives = 140/258 (54%), Gaps = 21/258 (8%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA-- 241 G+ R P R+ I K A S P+L+ G +G GK +AR + ++G Sbjct: 151 GGMVGRAPEMERLYRIITKAA-NSTHPVLIMGESGTGKEVVARAV--------HYTGCYK 201 Query: 242 ---FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 F+ V+C +L S LFG+VKGAFTGA+ S++GLL A+GG +FLDEIGEL D Sbjct: 202 DKPFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEIGELPIDL 261 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 Q+ LL+A++EK P G R V + +++A T RDL Q V +G FR DLY R+N+ T + Sbjct: 262 QSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRI 321 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 P LR R++DI + + +ER TG + EA + L + W GN REL Sbjct: 322 PPLRDRKQDIPLLVGHFLERTERATGFQRNISDEALKLMLTY------DWPGNVRELEHC 375 Query: 419 VTRMATFATSGRI-TLDV 435 + R + I TLD+ Sbjct: 376 LDRACALTSGPTINTLDL 393 >UniRef50_C0YJU0 Acetoacetate metabolism regulatory protein AtoC n=8 Tax=cellular organisms RepID=C0YJU0_9FLAO Length = 394 Score = 164 bits (415), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 138/238 (57%), Gaps = 19/238 (7%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P ++ + IEKVA S A +L+ GP GAGK +A I + G VEVNCA Sbjct: 152 SPALQKIQDMIEKVA-ASDARVLITGPNGAGKELVAHAI---HNQSERARGPMVEVNCAA 207 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFGHVKG+FTGA + ++G ANGG +FLDEIG++ QA +L+A++E Sbjct: 208 IPSELIESELFGHVKGSFTGAIKDKQGKFEQANGGTIFLDEIGDMSLIAQAKVLRALQES 267 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 P GSD+++ D ++IA T +++++ + EGKFREDLY R+++ +P L +R+EDI+ Sbjct: 268 KVSPVGSDKEIKVDVRVIAATNKNMQKEIEEGKFREDLYHRLSVIEIYVPPLDERKEDIK 327 Query: 370 PNLDYEVERHASLTGD-----SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 VE A + D + +F+ +A A A +W GN REL V R+ Sbjct: 328 ----LLVEHFAGMIADEHGTAAKKFDDKAIDALKAL------SWTGNIRELRNVVERL 375 >UniRef50_B4RA20 Sigma-54-dependent transcriptional regulator (Activator) protein n=13 Tax=Alphaproteobacteria RepID=B4RA20_PHEZH Length = 495 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 93/238 (39%), Positives = 131/238 (55%), Gaps = 18/238 (7%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M++++ + A +S PIL+ G +G GK +AR + + + FV VNC + + Sbjct: 153 MVKRLGERAARSSIPILITGESGVGKEVIARAV---HGSSDRAGKPFVAVNCGAIPENLV 209 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KG+FTGA + G + ANGG LFLDE+GEL D Q LL+A++E P G Sbjct: 210 ESILFGHEKGSFTGATDKHLGKFQEANGGTLFLDEVGELPLDMQVKLLRALQESEIDPIG 269 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S R V D ++++ T RDL Q VAEG+FREDLY R+N++ P LR+R+EDI +D Sbjct: 270 SKRSVKVDVRIVSATNRDLSQAVAEGRFREDLYYRLNVFPIEAPSLRERKEDIPALVDAF 329 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQAT-----WRGNFRELSASVTRMATFATS 428 + RFN E +A + A A W GN R+L +V R A + Sbjct: 330 IR----------RFNVEEGKAVVGAAPETLACLTGFDWPGNVRQLENAVYRAIVLADA 377 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 164 bits (414), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 87/225 (38%), Positives = 132/225 (58%), Gaps = 8/225 (3%) Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 P+L+ G TG GK LAR I +L + ++ F+ +NCA + + S LFG+ KGAFTG Sbjct: 159 PVLITGETGTGKELLARGIWKLSKRSNK---PFIAINCAAIPENLLESELFGYEKGAFTG 215 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A +++EG A+GG +FLDEIGEL Q+ LL+ ++E TFY G ++++ D +++A Sbjct: 216 AEKTKEGKFELADGGTIFLDEIGELPLSAQSKLLRVLQEGTFYRVGGNKEIKVDVRVMAA 275 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T RDL +VA+GKFREDLY R+NL LP LR+R+EDI ++ V ++ S+ Sbjct: 276 TNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLRERKEDIPYIVECIVNKYNQKLSKSI-- 333 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 A + ++ + W GN REL +V R +T++ Sbjct: 334 -AGASKEYMEVLKDQR--WEGNIRELENTVVRSMILCRDNILTVN 375 >UniRef50_D0ZDB7 Two-component system response regulator n=3 Tax=Enterobacteriaceae RepID=D0ZDB7_EDWTE Length = 446 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/283 (37%), Positives = 153/283 (54%), Gaps = 20/283 (7%) Query: 164 YNAIASRFAEERQQTLDFL-KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Y AI A+ Q D + TR+P R++EQ VA +S +L+NG +G GK Sbjct: 115 YRAIDDALAQSMPQGGDDAWRQAFVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKE 173 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 LAR I +A + AF+ +NC L S LFGH KGAFTGA SREGL ++A Sbjct: 174 LLARAI---HRASPRAGKAFIAINCGALPEQLLESELFGHAKGAFTGAVSSREGLFQAAA 230 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIG++ Q LL+ ++E+ P GS+R + D ++I+ T R+L + + G+ Sbjct: 231 GGTLFLDEIGDMPLTLQVKLLRVLQERKVRPLGSNRDLDIDVRIISATHRNLPKAMELGE 290 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV-----ERHASLTGDSVRFNTEARRAW 397 FREDL+ R+N+ + LP L QR EDI P L + ERH L F++ A +A Sbjct: 291 FREDLFYRLNVVSLRLPALNQRPEDI-PLLAAHLLRQAAERHKPLVRS---FSSGAMKAL 346 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 ++ A+W GN R+L + + T+ I +VE + Sbjct: 347 MS------ASWPGNVRQLVNVIEQCVALTTAPVIGEALVEQAL 383 >UniRef50_D2MI41 Transcriptional regulatory protein ZraR n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI41_9BACT Length = 464 Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 166/319 (52%), Gaps = 27/319 (8%) Query: 182 LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA 241 LK IA +P ++ Q+++++ ++ +LL G TG GK F+AR +L R + Sbjct: 140 LKDLIAD-SPGMRELVVQVQELSENAKTTVLLQGETGTGKEFIAR-VLHHNGPRGE--AP 195 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FV VNC + + S LFG+ +GAFTGA + GL A GG LFLDEIG+L QA Sbjct: 196 FVGVNCTAIPQELFESELFGYERGAFTGAARRKPGLCEQAEGGTLFLDEIGDLNPSMQAK 255 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ ++E++F G ++ DF+LIA T RDL++ V++G FREDL+ R+N+ + LP L Sbjct: 256 LLRVLQERSFKRLGGQDDITVDFRLIAATNRDLKKEVSQGTFREDLFFRLNVVSLELPPL 315 Query: 362 RQRQEDIEP-NLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 RQR EDI P +L V + D N EAR +A + GN REL V Sbjct: 316 RQRVEDIYPLSLRCLVHHSRDINKDIGEINPEARALLERYA------YPGNIRELENIVE 369 Query: 421 RMATFA-----TSGRITLDVVEDEINRLRYNWQESRPS-ALTALLG----AEAENIDLFD 470 R F T G + ++ E+ + P L +LG AE E+ Sbjct: 370 RAVIFCRGKTLTPGDLPRELHEETKPVVSSTISTDEPVLKLEMVLGRQTLAETES----- 424 Query: 471 RMQLEHVIAICRQAKSLSA 489 +E V+ +C Q KSL+A Sbjct: 425 -AIIEEVMKLCGQNKSLAA 442 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/277 (35%), Positives = 152/277 (54%), Gaps = 20/277 (7%) Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 S+ N + + ++ Q+ F I + +P +IE ++VA ++A +L+NG +G GK Sbjct: 245 SKLNYLENTVSKISQEHYTF--GNIFSVSPKMEHVIELAKQVA-PTKATVLINGESGTGK 301 Query: 222 SFLARRILELKQARHQFS----GAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREG 276 LA I HQ S + +NC + + A S FG+ GAFTGA+ E + G Sbjct: 302 ELLANAI-------HQHSDRKDAPLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPG 354 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG LFLDEIG+L + QA LL+A++E +FY G VS D ++IA T ++L + Sbjct: 355 AFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEE 414 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRA 396 LV +FREDLY RIN+ LP LR++ EDI P ++ + + G + TE +A Sbjct: 415 LVQNNQFREDLYYRINVANLELPPLREKTEDIMPLTKRFIDHFSQVHGIEI---TEIEQA 471 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + T + W GN REL + R+ F+T G+I++ Sbjct: 472 VM--DTLEEYHWPGNVRELKNVIERLVIFSTQGKISI 506 >UniRef50_C7LU15 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LU15_DESBD Length = 478 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/273 (39%), Positives = 151/273 (55%), Gaps = 19/273 (6%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFNRMIEQIEKVAIKSRA 209 P + I L L R IA R ++E+ + +K S I +P +E + K A+ S++ Sbjct: 103 PISLNNITLILQR--TIAYRASKEQNRGPRKVKRSAIIGESPVIMGCLEVMGKAAV-SKS 159 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +++ G TG GK AR I E G V ++C L A STLFGH KG+FT Sbjct: 160 NVIITGETGTGKELFARGIHE----NSDTPGKLVVIDCTNLSTHLAESTLFGHTKGSFTS 215 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A E+R+GL + AN G +FLDEIGEL D Q LL+ ++E+ F P GS+++VSS+F++IA Sbjct: 216 AHEARDGLFKLANNGTVFLDEIGELSLDLQKSLLRVLQERKFRPIGSEKEVSSNFRVIAA 275 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE---RHASLTGDS 386 T RDLR +V +G FR DLY R+N +P LR R+EDI +Y E R +S+T + Sbjct: 276 TNRDLRLMVEQGLFRNDLYYRLNGHQIEIPPLRARKEDILLLAEYYTEKFCRESSITPKT 335 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 + E A A+ W GN RE +V Sbjct: 336 L--TPEFLNALQAY------NWPGNVREFVNTV 360 >UniRef50_Q1DC06 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q1DC06_MYXXD Length = 531 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/247 (40%), Positives = 145/247 (58%), Gaps = 20/247 (8%) Query: 188 TRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFV 243 +++P + + +VA ++ P+L+ G TG GK LAR I H++S FV Sbjct: 204 SKSPVMRDLARRARQVA-ETDTPVLITGETGTGKERLARAI-------HRWSARADQPFV 255 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA + S LFGHVKGAFTGA + R G + A+GG L LDE+GEL D QA LL Sbjct: 256 TLNCAAIPAGLLESELFGHVKGAFTGATKDRAGRFQMAHGGTLLLDEVGELPFDLQAKLL 315 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 +A++EKTF P GSD+ V +D +++A T DL+Q +A+ +FREDLY R++++ LP LR+ Sbjct: 316 RALQEKTFEPVGSDKTVRADVRILAATHVDLQQAIAQKRFREDLYYRLSVFPLRLPPLRE 375 Query: 364 RQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 R+ED+ + +E A+ TG +R E A+ W GN REL+ ++ R Sbjct: 376 RREDLPQLCAFLLEEQANRTGRRGMRVTPEGLVRLEAY------EWPGNLRELANALER- 428 Query: 423 ATFATSG 429 AT T G Sbjct: 429 ATILTRG 435 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 109/277 (39%), Positives = 146/277 (52%), Gaps = 20/277 (7%) Query: 164 YNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Y A+ R E+ + FL S I R+ + E IEKVA +S A +L+ G +G GK Sbjct: 119 YQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVA-ESSATVLIQGESGTGKE 177 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I +L + S FV VNCA + D S LFGHVKG+FTGA +R G A+ Sbjct: 178 LAARAIHQLSS---RSSKNFVPVNCAAIPDDLLESELFGHVKGSFTGAYANRIGRFEMAD 234 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G LFLDEIG++ A Q LL+ ++ K F P GS R D ++IA + ++L + VA Sbjct: 235 KGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRD 294 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FREDLY R+++ T+P LR R+EDI +++ G +FN + RR F Sbjct: 295 FREDLYYRLSVIPITIPPLRDRREDIPLLINH-------FQG---QFNRDRRRLVKGFTR 344 Query: 403 SP-----QATWRGNFRELSASVTRMATFATSGRITLD 434 W GN REL V RM T SG IT+D Sbjct: 345 EALEMLCNYDWPGNVRELENLVERMITMKESGFITVD 381 >UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV58_POLNA Length = 512 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 118/383 (30%), Positives = 179/383 (46%), Gaps = 31/383 (8%) Query: 76 EIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPAR 135 +I+L +P D+ +Y+ + ++ H++ GT W +L++ R+ PAR Sbjct: 76 DIDLPSPIDYAAIYSAVCSNLLAARLPRDEVQLTFHLSPGTPAMAAIWIILSKTRF-PAR 134 Query: 136 LIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS----------- 184 LIQ+S R E +D + + F E ++ L + Sbjct: 135 LIQTSRERGIEP---------VDFEFDLASDFLPEFLERGSARIERLSASPVGAVAQEFV 185 Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 I ++ IE +VA+ P+L+ G +G GK A+ + R + FV Sbjct: 186 AIVHQSTVMREQIELARRVAVYD-VPVLILGESGTGKELFAQALHAANPKRK--NALFVP 242 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNC + + A S LFGH KGAFTGA +S +G A+GG LFLDEIG+L D Q LL+ Sbjct: 243 VNCGAIPTELANSELFGHAKGAFTGAVKSHDGYFTQADGGTLFLDEIGDLPLDAQVRLLR 302 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++ K P GS D +++A T RDL VA G+FREDL+ R+ + LP LR+R Sbjct: 303 VLQNKEVTPVGSGTARKVDVRIVAATHRDLAADVAVGRFREDLFHRLAVGILRLPPLRER 362 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP---QATWRGNFRELSASVTR 421 + D LD ++ S D R EA+ L+ + W GN REL ++ R Sbjct: 363 RGD----LDVLIDLFLSAFNDDARDRPEAQHKVLSESARKLLHTHEWPGNVRELQHTLLR 418 Query: 422 MATFATSGRITLDVVEDEINRLR 444 A ++ I VE I ++R Sbjct: 419 AAIWSPGESIDTRDVESAIFQVR 441 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 97/262 (37%), Positives = 143/262 (54%), Gaps = 13/262 (4%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P + I++VA + A +L+ G +G GK +AR I R + FV +NCA Sbjct: 153 SPPMEEVFRVIDRVA-DTDATVLITGESGTGKELVARAIHNRSSRR---AAPFVAINCAA 208 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + D S LFGHVKGAFTGA + +EG R A G LFLDE+GEL + Q+ LL+A++EK Sbjct: 209 IPRDLLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEK 268 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 P G + D +++A T DL + +AEG+FREDL+ R+++ LP LR+R+EDI Sbjct: 269 EVQPVGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIP 328 Query: 370 PNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 + + +H G SV F+ E A+ W GN REL +V R+ + Sbjct: 329 LLVRHFAAKHG---GASVTFSPEILAVMAAYG------WPGNVRELENTVERILIMRNAD 379 Query: 430 RITLDVVEDEINRLRYNWQESR 451 I D + +++ R R +E R Sbjct: 380 TIHPDDLPEKVRRGRSPQRECR 401 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/264 (38%), Positives = 141/264 (53%), Gaps = 11/264 (4%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 AE D + I +P ++E + KVA S + +L+ G +G GK LA+ + E Sbjct: 688 IAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVA-NSESTVLVRGESGTGKELLAQAVHE 746 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 +RH+ V VNCA L S LFGHVKGAFTGA E R G ANGG LFLDE Sbjct: 747 -NSSRHE--KPLVRVNCAALSPSLLESELFGHVKGAFTGAHEDRVGRFELANGGTLFLDE 803 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IG++ D Q LL+ ++E+ F G + D +LI T ++L Q + EG FREDLY R Sbjct: 804 IGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRLITATHQNLEQRITEGLFREDLYYR 863 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWR 409 +N+ + TLP LR+R+EDI Y ++R A+ G + + +A A +A W Sbjct: 864 LNVISITLPPLRERREDIFELAFYFLKRTANRLGKRISHIDPDAIEAL------ERAPWP 917 Query: 410 GNFRELSASVTRMATFATSGRITL 433 GN R+L + R A S IT+ Sbjct: 918 GNIRQLENVIERAVVLAESEVITM 941 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 122/401 (30%), Positives = 203/401 (50%), Gaps = 31/401 (7%) Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ 176 V + C + + Y+ +++++ +Q + G V I+ D+S + + R + Sbjct: 82 QVKRKCHLMRKDGSYIT--VLKTAAVLSDDQGQTMGAVEIVT-DISEMDRL-DRQLRQLT 137 Query: 177 QTLDFLKS--GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 +TLD S GI + + E +EK A +S P+ + G +G GK +A+ I L Sbjct: 138 RTLDEESSFQGIVGHSRQMKNLFELVEKAA-QSDFPVFICGESGTGKELVAQAIHNLSPR 196 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 Q +++VNCA L S LFGHVKGAFTGA + R+G +A+ G +FLDEIG+L Sbjct: 197 AEQ---PYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDEIGDL 253 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+ +E KTF G +R +S D + I T ++L L+A G FREDL+ RIN+ Sbjct: 254 PMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYRINVI 313 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFR 413 LP LR+R+ED+ +D+ ++R + +++ + EA R ++ Q +W GN R Sbjct: 314 PIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFM------QYSWPGNVR 367 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL +++ A RI + + + + ++Q L A AEN+ + Q Sbjct: 368 ELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQA------VDLPPAPAENL---QQRQ 418 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + +I +Q+ + +L ++R V +R+RKY Sbjct: 419 KQELIEALKQSSGNKSQAARLLGINR-----VTVLNRMRKY 454 >UniRef50_A3WGS6 Sigma-54 dependent DNA-binding response regulator FleR n=2 Tax=Erythrobacter RepID=A3WGS6_9SPHN Length = 442 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 96/231 (41%), Positives = 128/231 (55%), Gaps = 13/231 (5%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + E+I K AI P+LL GPTG GK +AR + + + R SG F+ +NCA + Sbjct: 130 LAERIAKSAI----PVLLEGPTGTGKEVMARFVHTMSERR---SGPFLAINCAAMPEAML 182 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 LFGH KGAFTGA E+REGL R+A+GG L LDEIGEL QA LL+ ++E P G Sbjct: 183 EGLLFGHRKGAFTGAGEAREGLFRAADGGSLLLDEIGELPLALQAKLLRTLQEGEVLPLG 242 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + + V D ++IA T R L VA+G+FREDL R+N++ ++P LR R+ DI P Sbjct: 243 ATKPVKVDVRIIAATNRTLSAEVAKGRFREDLLYRLNVFPLSIPALRDRRGDIAPLAFGM 302 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 + RHA G + + A A W GN REL + R A Sbjct: 303 LLRHACQPGSPTWISGQ------AMALLEAHPWPGNVRELENVIRRAILLA 347 >UniRef50_B2T4G6 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Burkholderia RepID=B2T4G6_BURPP Length = 772 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 94/247 (38%), Positives = 142/247 (57%), Gaps = 14/247 (5%) Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 P F +++ I++VA + P+L+ GPTG+GK +ARR+ Q + Q FV+VNC + Sbjct: 24 PAFRQLVRMIDRVA-PTDHPLLIFGPTGSGKELVARRVHAHSQRQDQ---PFVDVNCGAI 79 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 + + LFGHVKGAFTGA E+R+GL + G L LDEIGEL Q LL+ +E +T Sbjct: 80 PENLVEAELFGHVKGAFTGAAENRQGLFQQVGKGTLLLDEIGELPLALQPKLLRVLETRT 139 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 F P GS + +++A T RDLR+L EG FREDL+ R+ ++ +PGL QR EDI Sbjct: 140 FRPIGSSTSLHFAGRVVAATHRDLRELAREGLFREDLFYRLAVFVLAVPGLEQRIEDIPA 199 Query: 371 NLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 + + +HA + F+ A R Q +W G+ R+L +++++ A + Sbjct: 200 LVTHFAAQHAR----RLEFSPAAIRRLC------QHSWPGHIRQLRNLISQLSVLAENTL 249 Query: 431 ITLDVVE 437 I +D +E Sbjct: 250 IDVDSLE 256 >UniRef50_D2EVL6 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=D2EVL6_9BACE Length = 476 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 159/304 (52%), Gaps = 34/304 (11%) Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 K+ + +L+NG +G GK ++A RI +L + Q FV ++C ++ + A S FG Sbjct: 188 KLVSPTNMSVLINGASGTGKEYVAHRIHQLSKRADQ---PFVAIDCGSIPKELAASEFFG 244 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 H+KGAFTGA + G ANGG +FLDEIG L + Q LL+A++E+ P GS++++S Sbjct: 245 HIKGAFTGALTDKTGAFVEANGGTIFLDEIGNLSYEVQIQLLRALQERKIRPVGSNKEIS 304 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV----- 376 D +L++ T +L Q + +G FREDLY RIN +T +P L+ R+EDI ++ + Sbjct: 305 VDIRLVSATNENLEQAIEKGAFREDLYHRINEFTLRMPQLKDRREDILLFANFFLDQANR 364 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 E LTG F+ +A RA L + W GN R++ V R A IT+ Sbjct: 365 EMDKQLTG----FDDKASRALLEYP------WPGNLRQMKNMVRRATLLAQGKFITI--- 411 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 +E+N L+ E P A++G N + + +I RQ + + QL Sbjct: 412 -NELNELK----EPAP----AIIGIPLRN----EEAEKHQIIEALRQTGNNKSRAAQLLG 458 Query: 497 VSRQ 500 + R+ Sbjct: 459 IDRK 462 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 131/233 (56%), Gaps = 22/233 (9%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 SR+ +LL G +G GK +AR I L + G F++VNCA L S LFGH KGA Sbjct: 223 SRSTMLLRGESGTGKEVIARAIHYLSPRK---DGPFIKVNCAALSETLLESELFGHEKGA 279 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA+ R+G A+GG LFLDEIGE+ QA LL+ ++E+ F G R + D +L Sbjct: 280 FTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRL 339 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 + T RDL + VA+G+FR DLY RIN+ + +P LR+R+EDI +++ +E Sbjct: 340 VTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLE--------- 390 Query: 387 VRFNTEARRAWLAFATSPQAT-------WRGNFRELSASVTRMATFATSGRIT 432 +F E +RA +A SPQA W GN REL V R AT IT Sbjct: 391 -KFRVENQRAMVAM--SPQAMKVMMNCYWPGNVRELENCVERTATMMRGDLIT 440 >UniRef50_A6KXD6 Two-component system response regulator n=40 Tax=Bacteroidetes RepID=A6KXD6_BACV8 Length = 460 Score = 161 bits (407), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 133/224 (59%), Gaps = 10/224 (4%) Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+NG +G GK ++A RI +L + + F+ ++C ++ + A S FGHVKG+FTGA Sbjct: 180 VLINGASGTGKEYVAHRIHQLSKRADK---PFIAIDCGSIPKELAASEFFGHVKGSFTGA 236 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G ANGG LFLDEIG L + Q LL+A++E+ P GS++++ D +L++ T Sbjct: 237 LNDKTGAFVEANGGTLFLDEIGNLSYEVQIQLLRALQERRIRPVGSNKEIEVDVRLVSAT 296 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER-HASLTGDSVRF 389 +L+Q + +G FREDLY RIN +T +P L++RQEDI ++ +++ + L + F Sbjct: 297 NENLQQAIEKGNFREDLYHRINEFTLRMPALKERQEDILLFANFFLDQANRELDRQLIGF 356 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +T A +A + +W GN R+L V R A S ITL Sbjct: 357 DTAASQALQTY------SWPGNLRQLKNIVKRATLLAQSNFITL 394 >UniRef50_C1SHS7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=3 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHS7_9BACT Length = 429 Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 10/234 (4%) Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 Q ++VA KS ++L G TG GK +AR I E R + F +NC L+ Sbjct: 146 QAQRVA-KSDTNVMLTGETGTGKEVMARYIHENSNRRKKI---FAAINCCNLQPHLFERE 201 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGH KGAFTGA + +G++++A GG LFLDEIGE+ D Q L+ +E K+FYP G+ Sbjct: 202 LFGHKKGAFTGADKDSKGIVQTAYGGTLFLDEIGEMPIDLQPKFLRFLETKSFYPVGAST 261 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 Q +SD ++IA T R+ ++VA+G FREDLY R+N++ LP LR+R++DI P ++ +E+ Sbjct: 262 QETSDIRIIAATNRNPLEMVAKGLFREDLYYRLNVFNIELPPLRERKDDIIPLAEHFIEK 321 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + + A ++A + GN RELS + R + R+T Sbjct: 322 FRHINTKVMGLEESALACLRSYA------FPGNIRELSNIIERAMILEQTNRLT 369 >UniRef50_Q8ABU5 RteB, two-component system response regulator n=6 Tax=Bacteroides RepID=Q8ABU5_BACTN Length = 432 Score = 160 bits (406), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 11/225 (4%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M QIE +A + +LL G +G GK +A E+ + H+++ +V V+C T+ + A Sbjct: 137 MYRQIELIAC-ADISVLLRGASGTGKEHVAH---EIHERSHRWNKPYVPVDCGTVPEELA 192 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S FGH+KGAFTGA + GL R+A+GG LFLDEIG L Q MLL+A++EK + P G Sbjct: 193 ASEFFGHLKGAFTGAESDKAGLFRTADGGTLFLDEIGNLSYRTQVMLLRALQEKRYRPLG 252 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 R+ D +L+A T +L + +AEG+FREDL+ R+N +T LP L + +EDI P D+ Sbjct: 253 DTREYPFDIRLVAATNENLEKAIAEGRFREDLFHRLNEFTIRLPLLAECREDILPLADFF 312 Query: 376 VER-HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 +E +A L + F+ EAR A+ W GN RE+ +V Sbjct: 313 LEEANAELGKRTGGFDREARSRLAAY------QWPGNMREMKNTV 351 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 147/251 (58%), Gaps = 12/251 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I T + F ++ E+ E +A +S + IL+ G +G GK +A+ I E +R + V+V Sbjct: 396 IITSHEAFKKIKERAE-IAAQSSSSILITGESGTGKELMAQSIHEAGVSRDK---RLVKV 451 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 NCA + D S FG+ GAFTGA ++ + G L A+GG LFLDEIG++ + Q+ LL+ Sbjct: 452 NCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLR 511 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 +++K+F P GS++ F++IA T +DL Q+V E +FR DLY R+N+ F +P LR+R Sbjct: 512 VLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRER 571 Query: 365 QEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +DI + + +E++ + G +++ + +A L + TW GN REL V R+A Sbjct: 572 PQDIILLVHFFIEKYNHILGSAIQDISDDAMTVLL------EHTWPGNVRELENVVERVA 625 Query: 424 TFATSGRITLD 434 F + +D Sbjct: 626 NFVKGNLVDID 636 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 99/262 (37%), Positives = 143/262 (54%), Gaps = 21/262 (8%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG--- 240 S + +P + + I+K A S +L+ G +G GK A+ I HQ+S Sbjct: 143 SSMIGNSPAIKAVFKMIDKTA-PSDVTVLIQGESGTGKELAAKMI-------HQYSKRAD 194 Query: 241 -AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 FV VNCATL+ S LFGHVKGAFTGA ESR GL A GG LFLDEIGEL + Q Sbjct: 195 KPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQ 254 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 A LL+ I+ G +R ++ D ++IA T ++L V EG+FREDLY R+N+ T LP Sbjct: 255 AKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLP 314 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 LR+R++D+ + + +++ G+ ++ + EA A + W GN REL + Sbjct: 315 SLRERKDDLTALIQHFLQKFCK--GERTMDMHPEALHAMTLY------DWPGNIRELENT 366 Query: 419 VTRMATFATSGRITLDVVEDEI 440 + R A I+++ + D I Sbjct: 367 IERTVVLADGNIISIEELPDNI 388 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 128/218 (58%), Gaps = 10/218 (4%) Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 P+L+ G TG GK AR + +L + + + F+ +NCA + + S LFG+ KGAFTG Sbjct: 157 PVLIIGETGTGKELFARGLWKLSKRKDK---PFIAINCAAIPENLIESELFGYEKGAFTG 213 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A ++G ANGG +FLDEIGE+ + Q+ LL+ ++E +FY G + +++ D ++IA Sbjct: 214 AETQKKGKFEIANGGTIFLDEIGEMPLEAQSKLLRVLQEGSFYRVGGEEEINVDVRVIAA 273 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T +DL Q+V EGKFREDLY R+N+ TF LP LR+R+EDI Y VE + + Sbjct: 274 TNKDLSQMVKEGKFREDLYYRLNVITFKLPPLRERKEDI----PYIVECIINKNNKKINK 329 Query: 390 NTEA-RRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 N E + ++ S W+GN REL V R F Sbjct: 330 NIEGFTKDYIEKLKS--RYWKGNIRELENVVIRSMVFC 365 >UniRef50_A0R926 Sensory box sigma-54 dependent DNA-binding response regulator n=79 Tax=Bacillus RepID=A0R926_BACAH Length = 464 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/243 (36%), Positives = 141/243 (58%), Gaps = 11/243 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ ++ ++IE I+KV++ + +L+ G TG GKS L R + E+ +++ +F E Sbjct: 156 GLIFKSIAMQKIIETIKKVSVVD-STVLVLGETGVGKSRLVRHLHEMSNRKNE---SFYE 211 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA L + S LFG+ G+FTGA RE ++GLL SA+ G LFLDEIGE+ + QA LL Sbjct: 212 INCAALPTNLIESELFGYSGGSFTGANREGKKGLLESAHKGTLFLDEIGEMPLEIQAKLL 271 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++EKTF P G D +++A T RDL +V +G FR+DLY R+N+ +P LR+ Sbjct: 272 QVLQEKTFRPIGGRELKKVDVRIVAATNRDLSMMVKQGTFRKDLYYRLNVIPILIPPLRE 331 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R EDI P + + ++ G +V+ + ++ + W GN RE+ + R+ Sbjct: 332 RTEDILPLIYHYLQHFNEKYGRNVKLAPSTLQMFVGYP------WEGNNREIENVIERIV 385 Query: 424 TFA 426 A Sbjct: 386 ITA 388 >UniRef50_B8KX17 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX17_9GAMM Length = 459 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/269 (35%), Positives = 145/269 (53%), Gaps = 17/269 (6%) Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 P R+ QI+KVA +S+AP+ ++G +G GK +AR I +L Q F+ VNC + Sbjct: 133 PAMERLRLQIQKVA-RSQAPVHIHGESGVGKEVVARLIHQLSPRAEQ---PFIAVNCGAI 188 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 D S LFGH KG+FTGA + GL ++A GG L LDE+ +L + Q LL+ I+EK Sbjct: 189 PADLVESELFGHKKGSFTGAAADKPGLFQAAAGGTLLLDEVADLPLNVQVKLLRVIQEKA 248 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 P G+ ++V +D +L++ T +DL V +G FR+DL+ RIN+ +P LR+R+EDI Sbjct: 249 VRPVGAQQEVPTDVRLLSATHKDLSLAVRDGHFRDDLFYRINVIAIDVPSLRKRREDIPL 308 Query: 371 NLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 + ++R A G D++ +T A + + GN REL + R A G Sbjct: 309 LATHLLQRIAMDNGSDAINIDTAALTKLCDY------DFPGNVRELENILARAHALADGG 362 Query: 430 RITLDVVE------DEINRLRYNWQESRP 452 +T+D ++ EI ES P Sbjct: 363 ELTIDDIQFQTMGASEITEHHAKSDESYP 391 >UniRef50_C7LSX1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSX1_DESBD Length = 466 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/270 (36%), Positives = 144/270 (53%), Gaps = 11/270 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + T +P R+ + E +A S P+L+ G TG GK LA+ I G FV V Sbjct: 153 LITYSPAMLRIFQYCEAIA-ASPEPVLIMGETGVGKELLAKAI----HGASARKGEFVAV 207 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 N A L TLFGHV+GAFTGA +R G + A+GG LFLDEIG+L Q LL+ Sbjct: 208 NVAGLDEQAFSDTLFGHVRGAFTGADRARGGFMERASGGTLFLDEIGDLPLQAQIKLLRV 267 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+ FYP GSDR ++I+ T R + +L +FR D Y RI + T+P LRQR Sbjct: 268 LQEREFYPMGSDRPKPLTARIISATNRAVDELKDAQRFRADFYFRIATHSLTIPPLRQRP 327 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI P D+ + + A G ++ ++A L +A + GN REL + MA Sbjct: 328 EDITPLADHFLAQAARTYGRAIEHPSQALELLLGYA------FPGNIRELRGLILDMAGR 381 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSAL 455 + + + LD +++++++ + Q S P L Sbjct: 382 SQNDQHCLDALKEQLSQAQPVLQSSMPDHL 411 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 150/281 (53%), Gaps = 38/281 (13%) Query: 182 LKSGIATRNPHFNRMIE--------QIEKV------AIKSRAPILLNGPTGAGKSFLARR 227 L S +A NP F+ IE ++++V K +L+ G G GK +AR Sbjct: 129 LISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRLCKVDTTVLVRGENGTGKELVARA 188 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I R SGAFV +NC + + S LFGH KGAFTGA E + G + AN G LF Sbjct: 189 I-HFNSPRK--SGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQLANNGTLF 245 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIGEL D Q LL+ ++E+ F P GS+R+V + ++IA T R+L +++ EG+FREDL Sbjct: 246 LDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMMEEGEFREDL 305 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQA 406 + R+N+ LP LR+R +DIE +L G+ + +F+ + R A +P+A Sbjct: 306 FYRLNVMPIFLPPLRERADDIE-----------ALAGNFIKKFSKQHGRQITAI--TPEA 352 Query: 407 T-------WRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 W GN REL + R S +IT+D + D I Sbjct: 353 LDMLKSYRWPGNIRELENIIERSFIVENSHQITVDSLPDSI 393 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/259 (37%), Positives = 141/259 (54%), Gaps = 15/259 (5%) Query: 175 RQQTLDFLKSGIATRNP--HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 RQ+ + +S + T H +M+EQ+ + A +L+ G +G GK +AR L Sbjct: 151 RQREPNLFRSLVGTSRAVQHVRQMMEQV----ADTEASVLILGESGTGKEVVARN-LHYH 205 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIG 292 R Q G FV VNC + + S LFGH KGAFTGA +R G A GG LFLDEIG Sbjct: 206 SKRRQ--GPFVPVNCGAIPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIG 263 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 ++ Q LL+ ++E+TF GS+R ++D ++IA T +DL +++ EG FREDLY R+N Sbjct: 264 DMPLPMQVKLLRVLQERTFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLN 323 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNF 412 ++ + LR+R EDI ++ + R S+RFN+ A + + W GN Sbjct: 324 VFPIEMAPLRERVEDIPLLMNELISRMEHEKRGSIRFNSA------AIMSLCRHDWPGNV 377 Query: 413 RELSASVTRMATFATSGRI 431 REL+ V RMA G I Sbjct: 378 RELANLVERMAIMHPYGVI 396 >UniRef50_Q6MPP3 Nitrogen assimilation regulatory protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPP3_BDEBA Length = 409 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/272 (38%), Positives = 143/272 (52%), Gaps = 24/272 (8%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GA 241 I +RN +N ++ + VA K+ P+L+ GP+G GK +A QA H+ S G Sbjct: 103 IKSRNDVWNEELQALSNVA-KTEFPVLILGPSGTGKDVIA-------QALHENSLRDKGP 154 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FV VNC+ L S LFGHVKG+FTGA R+G +A GG LFLDEIG+L QA Sbjct: 155 FVSVNCSALSETLIESELFGHVKGSFTGAINDRKGAFEAARGGTLFLDEIGDLSYSLQAK 214 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+A+E P G+DR V +D ++IA T ++L + + EG FR DLY R+N+ + P L Sbjct: 215 LLRALENNEIRPVGADRNVRTDVRIIAATHQNLSEKIREGLFRSDLYFRLNVVSVAPPAL 274 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 R ED E L Y R VRF ++ A A + W GN REL V+R Sbjct: 275 ALRMEDFE-ELLYTFARKM-----RVRF------SFGAIARLKKHPWPGNIRELKNLVSR 322 Query: 422 MATFATSGRITLDVVEDEINRLRYNWQESRPS 453 A IT + VE +++ E R S Sbjct: 323 AAALYPRIHITENHVEKLLDKTLLEKSEERVS 354 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 93/229 (40%), Positives = 129/229 (56%), Gaps = 10/229 (4%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S A IL+ G +G GK +A I + R + + +NCA L S LFGHV+GA Sbjct: 170 SEANILILGESGTGKELIAGAIHRHSKRRGR---RILSINCAALSDTLLESQLFGHVRGA 226 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA +++GLL A+ G LF+DEIG++ QA LL+ I+E F P G+ R D + Sbjct: 227 FTGATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRF 286 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 +A T ++L + VAEG+FREDLY R+N+ + LP LR+R+EDIEP + + ++ Sbjct: 287 VAATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKE 346 Query: 387 V-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 V RF EA L + +W GN REL V R A SG +T D Sbjct: 347 VDRFTREALDLMLGY------SWPGNIRELENVVERAVILARSGVVTTD 389 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 166/305 (54%), Gaps = 29/305 (9%) Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 EQ+ +VA S A +L+ G +G GK +AR I+ L + + F+ +NCA L + S Sbjct: 206 EQVRQVA-PSDATVLIRGGSGTGKEMIARAIVNLSARKDK---PFITLNCAALPENLVES 261 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGH KGAFTGA R G +ANGG LFLDE+G+L Q LL+ ++E+TF GS+ Sbjct: 262 ELFGHEKGAFTGALNRRIGRAEAANGGTLFLDEVGDLTMQTQVKLLRFLQERTFSRVGSN 321 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 ++ SD + +A T R+L +L+A+GKFREDL+ R+N++ T+P L +R+ DI ++ +E Sbjct: 322 EELHSDVRFLAATSRNLEELIAQGKFREDLFYRLNIFPITMPDLAKRKSDIILLAEHFIE 381 Query: 378 RHASLTGDSVRFNTE-ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 + ++R+N + R + A W GN REL + R AT D + Sbjct: 382 KM------NLRYNKKVGRLSTTAINLLMSYHWPGNVRELENCIERGVLTATD-----DCI 430 Query: 437 EDEINRLRYNWQESRPSALT--ALLGAEAENID----LFDRMQLEHVI-AICRQAKSLSA 489 YN S ++L+ ++ G ++ I + D + E + AI R ++SA Sbjct: 431 HS------YNLPPSLQTSLSVGSVGGTPSDKIAPLEVMMDNYEREIITEAIKRNDGNISA 484 Query: 490 AGRQL 494 AGR L Sbjct: 485 AGRDL 489 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/251 (38%), Positives = 142/251 (56%), Gaps = 11/251 (4%) Query: 183 KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAF 242 +SG+ ++P +++ +I VA S A +L++G +G GK +AR L + + Sbjct: 138 QSGMVGKSPAMQQLLSEIAMVA-PSDATVLIHGDSGTGKELVAR---ALHASSARSDKPL 193 Query: 243 VEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAML 302 V +NCA L S LFGH KGAFTGA + REG A+GG LFLDEIG++ Q L Sbjct: 194 VTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRL 253 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+AI+E+ GS++ +S D +LIA T RDL Q + G+FR+DLY R+N+ T P LR Sbjct: 254 LRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLR 313 Query: 363 QRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 QR+EDI ++ ++R A+ +V+ F +A + +A W GN REL ++ R Sbjct: 314 QRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLLIHYA------WPGNIRELENAIER 367 Query: 422 MATFATSGRIT 432 T I+ Sbjct: 368 AVVLLTGEYIS 378 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 154/302 (50%), Gaps = 21/302 (6%) Query: 160 DLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFN-------RMIEQIEKVAIK---SR 208 D++ N + AE +++ + + T FN R +E + AIK Sbjct: 200 DMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFAKVD 259 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 AP+L+ G +G GK +A + + F+++NC + S LFG+ GAFT Sbjct: 260 APLLITGESGVGKEVIADLVYRYSPRK---GLPFLKINCGAIPETLLESELFGYEGGAFT 316 Query: 269 GAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 GA+ E R GL ANGG + LDEIGEL Q LL+ +++K FY G + V D +LI Sbjct: 317 GAKKEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLI 376 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T RDL+++V + +FR DL+ R+N+ +P LR+R EDI P ++Y ++++ Sbjct: 377 AATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNK------ 430 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 ++N R + + TW GN REL + R+ ITLD + DE+ + Y W Sbjct: 431 KYNVSKRISGDVYHAFTNYTWVGNVRELENLIERLVVICDRDEITLDYLPDEMKKAIYVW 490 Query: 448 QE 449 ++ Sbjct: 491 RD 492 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 159 bits (401), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 16/265 (6%) Query: 175 RQQTLDFLKSGIAT-----RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 RQQ L + I + R+P ++IE ++KVA + + +L+ G +G GK +A R Sbjct: 226 RQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVA-QVDSTVLIMGESGVGKGVIASR-- 282 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFL 288 L + + G F+ +NC + S LFG+ GAFTGAR E ++GLL ANGG +FL Sbjct: 283 -LHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFTGARKEGKKGLLELANGGTVFL 341 Query: 289 DEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLY 348 DEI EL Q LL+ I++K G + +S D + +A T +D++++VAEG FREDLY Sbjct: 342 DEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQRMVAEGLFREDLY 401 Query: 349 ARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATW 408 R+N+ +P LR RQEDI L+Y +E+ + + +F EA + W Sbjct: 402 YRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKNKKFTPEAIEILRNY------NW 455 Query: 409 RGNFRELSASVTRMATFATSGRITL 433 GN REL V R+ IT+ Sbjct: 456 PGNVRELENLVERLLVTKEGNEITV 480 >UniRef50_A6VTM3 Putative PAS/PAC sensor protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VTM3_MARMS Length = 469 Score = 158 bits (400), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 140/255 (54%), Gaps = 20/255 (7%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 FNRM+E+I +V+ S A +LL G +G+GK +A + Q H+ S + V + CA L Sbjct: 163 FNRMLEKITRVS-HSDASVLLLGESGSGKELVAHAV---HQGGHRASNSMVTLECAGLTD 218 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFGHVKG+FTGA +R GL+ ANGG LFLDEIG++ Q LL+ IE F Sbjct: 219 SLFESELFGHVKGSFTGAHSNRVGLVELANGGTLFLDEIGDVPLSMQVKLLRLIETGAFR 278 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P GS ++F+LI T ++L Q+V G+FR+DLY RIN++ +P LR+RQ+D+ Sbjct: 279 PVGSSTVKHTNFRLICATHKNLAQMVKAGEFRQDLYYRINVFPIHVPSLRERQDDL---- 334 Query: 373 DYEVERHASLTGDSVRFNTEARRAWL---AFATSPQATWRGNFRELSASVTRMATFATSG 429 LT ++ +E + L A Q + GN RELS + R + Sbjct: 335 -------VLLTNTLLKRISERKEYHLTDSAMQVLKQYDFPGNIRELSNILNRATLLTDTN 387 Query: 430 RITLDVVED--EINR 442 I +++ EI+R Sbjct: 388 MIERSTIQECLEIDR 402 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 112/317 (35%), Positives = 164/317 (51%), Gaps = 32/317 (10%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + R+P + IEKVA S+A +LL G +G GK+ +A+ + EL + S FV++ Sbjct: 198 MVGRSPSMLVVQRHIEKVA-PSKASVLLLGESGTGKTLVAQMLHELSI---RSSAPFVKI 253 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA+L + S LFG+ KGAFTGA S+ G + A GG +FLDE+GEL QA LL+ Sbjct: 254 NCASLPENLLESELFGYEKGAFTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRF 313 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +++K F GS R D +++A T RDL +VAEG FREDLY R+N++ +P LR R+ Sbjct: 314 LQDKEFERLGSTRTRVVDVRVLAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARK 373 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI L + ++R + G + T A A LA W GN RE+ V RM Sbjct: 374 EDIPDLLHHFLDRISREYGRRIGI-TNAAMALLA-----GYDWPGNVREMENLVERMVIM 427 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI----- 480 A I ++V+ P + G+ E + ++M+ + ++A Sbjct: 428 ADEDEIGVNVLP--------------PFLSEQMTGSGGETLSRIEKMERKEILAALERNG 473 Query: 481 ---CRQAKSLSAAGRQL 494 R AK L RQ+ Sbjct: 474 WNQTRTAKELGITLRQI 490 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 140/251 (55%), Gaps = 14/251 (5%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 S I R+ R+IE + KVA + + IL+ G TG GK LA+ I + ++ G F+ Sbjct: 261 SEIIYRSKQMERLIELVNKVA-PTESTILIYGETGVGKEVLAKYIHNISRSE----GPFI 315 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAML 302 ++NC + + + LFG+ KGAFTGA+ E + GL+ A+ G L LDEI EL Q L Sbjct: 316 KINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKL 375 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ ++EK F G + + D ++IA + +DL++LV EGKFR+DLY R+N+ T+P LR Sbjct: 376 LRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLR 435 Query: 363 QRQEDIEPNLDYE-VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 +R +DI P L Y + + G S + E ++ + W GN REL + R Sbjct: 436 ERVQDI-PILAYHFLNMYNEKYGHSKQLTNEVMEIFMKYP------WPGNVRELENVIER 488 Query: 422 MATFATSGRIT 432 + + + +IT Sbjct: 489 IVIISENDQIT 499 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 94/256 (36%), Positives = 139/256 (54%), Gaps = 19/256 (7%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 +G+ + P ++ E + +A S + +L+ G +G GK LA+ L ++ + V Sbjct: 143 TGLIGQCPAIQKLTETVSLLA-NSDSTVLITGESGCGKEVLAK---ALHKSGSRSGKPLV 198 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NC + + S LFGHVKGAFTGA +R G ANGG +FLDEIG++ A Q LL Sbjct: 199 SINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLL 258 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ F P GS + + D ++IA T RDL +A G+FREDLY R+N+ TLP LR+ Sbjct: 259 RVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRE 318 Query: 364 RQEDIEPNLDYEVER-----HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 R +DI D+ + R A +TG S E +R L + W GN REL Sbjct: 319 RGDDILLLTDHFITRFNQQKKADITGVS----DEVKRIILNY------QWPGNVRELQNL 368 Query: 419 VTRMATFATSGRITLD 434 + R+ T G + L+ Sbjct: 369 IERVTTLKRHGIMELE 384 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 134/242 (55%), Gaps = 10/242 (4%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I K + A +LL G +G GK+ LA+ I R + FV++NCA + + S L Sbjct: 242 IAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDK---PFVKINCAAIPDNLLESEL 298 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FG+VKGAFTGA + + G + A+GG LFLDEIGEL Q+ LL I+EK F G + Sbjct: 299 FGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEKEFERLGDTKT 358 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 D ++IA T +DL QLV EGKFREDLY R+ + + +P LR+R+EDI ++Y ++ + Sbjct: 359 KKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIPFLINYFIDLY 418 Query: 380 ASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 + ++ + EA R L + + GN REL + R A I + + D Sbjct: 419 SKQYNKHIKGISPEAVRLLLNY------DYPGNIRELENIIERAVILAKGKFIEVSDLPD 472 Query: 439 EI 440 EI Sbjct: 473 EI 474 >UniRef50_A4SI13 Two-component system lateral flagellar response regulator n=10 Tax=Gammaproteobacteria RepID=A4SI13_AERS4 Length = 458 Score = 157 bits (398), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 97/259 (37%), Positives = 140/259 (54%), Gaps = 19/259 (7%) Query: 176 QQTLDFLKSGIATRNPHFNRM--------IEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 QQ LD ++ + R N + + Q+ + A K+ A IL+ G +G GK LAR Sbjct: 121 QQMLDAVRGALRLRQSIPNLIATSAMSLQVLQLARRAAKTSATILIGGESGTGKERLARY 180 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I ++ ++ S F+ VNCA + S LFGH KGAFTGA ++ G A GG L Sbjct: 181 IHDMS---NRASKPFIAVNCAAIPESMIESILFGHNKGAFTGATGTQPGKFELAQGGTLL 237 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEI EL QA LL+ ++EK GS + ++ D ++IA + +D+R LV G+FREDL Sbjct: 238 LDEISELPLSLQAKLLRVLQEKEVERLGSHQTITLDVRIIAASNKDIRTLVTMGQFREDL 297 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQAT 407 + R+++ + P LR+R +DI P +Y +ERHA G R + AR+ LA+ Sbjct: 298 FYRLDVLPMSWPALRERPDDILPLAEYFIERHAPQQG--YRLSENARKQLLAYG------ 349 Query: 408 WRGNFRELSASVTRMATFA 426 W GN REL + R A Sbjct: 350 WPGNVRELDNVMQRSLIMA 368 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 9/247 (3%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 R+ + + S I + + ++E I +VA S A +LL G +G GKS +AR + Sbjct: 210 RELSEKYRVSSILSNSSRMQEVLEMIHRVA-ASNATVLLRGESGTGKSMVARAV---HHN 265 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 + +G F+ VNC+ L S LFGH +GAFTGA E+R+G A GG LFLDEIGEL Sbjct: 266 SKRAAGPFITVNCSALPETLLESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGEL 325 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL ++++ F G R + D +LI T +DL + VAEG FREDLY R+N++ Sbjct: 326 STAVQVKLLSVVQDREFQRVGGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVF 385 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRE 414 LP LR+R+ DI ++ +E+ AS ++R R + A Q W GN RE Sbjct: 386 PIYLPPLRERRTDILLLAEFFLEKFASENDKNIR-----RISTPAIDLLTQYHWPGNVRE 440 Query: 415 LSASVTR 421 L + R Sbjct: 441 LQNCLER 447 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 103/282 (36%), Positives = 144/282 (51%), Gaps = 29/282 (10%) Query: 160 DLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 DL+ AI EE ++ F + +RNP R+ + +E +A S A + LNG +G Sbjct: 232 DLTPITAIK----EEIREKYSF--RSLVSRNPAMRRLFDVMEDIA-ASNATVFLNGESGT 284 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK AR I +L R G V VNC L S +FG KGAFTGA E+R G L Sbjct: 285 GKELFARAIHDLSPRRE---GPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRLE 341 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 NGG FLDEIG+L Q LL+ +E F P G+ + +D + I T R+L ++VA Sbjct: 342 LCNGGTFFLDEIGDLPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMVA 401 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLA 399 EG FR+DLY RIN+ T +P LR R+EDI +D ++R ++ +N + R Sbjct: 402 EGTFRQDLYFRINIVTLNIPPLRDRREDIPLLVDMALQRF------NLTYNKKVR----- 450 Query: 400 FATSPQA-------TWRGNFRELSASVTRMATFATSGRITLD 434 + SP+ ++ GN REL + + ITLD Sbjct: 451 -SVSPEVLKLLLTHSFPGNVRELLNLIEQSVILCRGTEITLD 491 >UniRef50_A1VHZ7 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VHZ7_DESVV Length = 476 Score = 157 bits (398), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 97/251 (38%), Positives = 138/251 (54%), Gaps = 11/251 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI R P + E + KVA+ AP+L+ G +G GK +AR I L + + FV Sbjct: 168 GIVGRCPSMRAVFETVAKVAVTG-APVLVTGESGTGKELVARAIHALGP---RCTRTFVA 223 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NC + + + FG+ KGAFTGA + +G + A+GG LFLDEIGEL A+ Q LL+ Sbjct: 224 INCGAIPDNLLEAEFFGYEKGAFTGATQRVQGKVEYADGGTLFLDEIGELPANLQVKLLR 283 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++EK G + ++ D +++A T RD++ +A G+FREDLY RI + LP LR R Sbjct: 284 FLQEKVIQRVGGRKDIAVDARIVAATNRDIQTEIASGRFREDLYYRIGVVPVALPPLRAR 343 Query: 365 QEDIEPNLDYEVERHAS-LTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +DI + +E A TG+ V F+ A +A L +A W GN REL V R Sbjct: 344 GDDILLLARHFLESSAGEGTGNIVGFSPAAEQAMLRYA------WPGNVRELENKVRRAV 397 Query: 424 TFATSGRITLD 434 FA+ RI D Sbjct: 398 IFASGRRIMPD 408 >UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammaproteobacteria RepID=Q485M5_COLP3 Length = 509 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 97/273 (35%), Positives = 144/273 (52%), Gaps = 17/273 (6%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IE+VA K+ A +L+ G +G GK +AR I L + AFV VNC + + S L Sbjct: 158 IEQVA-KTPASVLVLGESGTGKEVIARNIHNLSDRAKE---AFVPVNCGAIPAELLESEL 213 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA +R+G A GG LFLDEIG++ Q LL+ ++E+TF G + Sbjct: 214 FGHEKGAFTGAISTRKGRFELAEGGTLFLDEIGDMPQPMQVKLLRVLQERTFERVGGSKS 273 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + ++ +++A T +DL +++ EG FREDL+ R+N++ P LR+R+EDI L + R Sbjct: 274 IKANVRIVAATHQDLEEMIKEGSFREDLFYRLNVFPIDTPSLRERKEDIPLLLKELLTRF 333 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 +VRF +A + + + W GN RELS + RM G +DV E Sbjct: 334 EHEQNKTVRFTEKAIESLM------EHPWPGNVRELSNLIERM--LIMYGDQIVDVTE-- 383 Query: 440 INRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 L Y +Q A E + D+ + + Sbjct: 384 ---LPYKYQHVDVQAYNPEYPEELQEHDVINEL 413 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 157 bits (397), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 177/338 (52%), Gaps = 24/338 (7%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I ++P + + I KVA + A +L+ G +G GK +A+ I H+ +V V Sbjct: 142 IIGKSPAMVNIFDTIVKVA-PTNATVLIQGESGTGKEMVAKSI---HFNSHRKDAPWVAV 197 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGH KGAFTGA ++G A+GG LFLDEIGE+ + Q LL+ Sbjct: 198 NCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRV 257 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++EKTF G + + D +LIA T RDL++ V FREDL+ R+N+ LP LR+RQ Sbjct: 258 LQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQ 317 Query: 366 EDIEPNLDYEVERHAS-LTGDS--VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 +DI +D+ ++++AS +G+S + + + R + +A W GN REL + R Sbjct: 318 KDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYA------WPGNVRELENVIERA 371 Query: 423 ATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICR 482 S I+++ + E+ R N + A L E + + ++ ++ + + Sbjct: 372 IILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDATL---YETLSMVEQAMIKRAMLMSD 428 Query: 483 QAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 +S +A Q+ + GK+ +N +++K+ FGL Sbjct: 429 NVQSHAA---QILGI---GKSGLN--QKIKKFGLDFGL 458 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 105/276 (38%), Positives = 150/276 (54%), Gaps = 12/276 (4%) Query: 159 LDLSRYNAIA-SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 L L+ A+A +R +E + G+ +P ++ I VA S A +L++G + Sbjct: 113 LQLTLSEALAHTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVA-PSDATVLIHGES 171 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR L AR + V +NCA L S LFGH KGAFTGA + REG Sbjct: 172 GTGKELVAR-ALHASSARSRRP--LVILNCAALNESLLESELFGHEKGAFTGADKRREGR 228 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S D +LIA T RDL + Sbjct: 229 FVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAEE 288 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 V+ G+FR+DLY R+N+ T +P LR R+EDI P Y ++R+A +V+ F +A Sbjct: 289 VSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGFTPQAMDL 348 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + +A W GN REL +V R T I+ Sbjct: 349 LIHYA------WPGNIRELENAVERAVVLLTGEYIS 378 >UniRef50_A7H973 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H973_ANADF Length = 602 Score = 157 bits (397), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 134/242 (55%), Gaps = 9/242 (3%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 R++ Q+ KVA + + +L+ G TG GK +AR I + + + AF+ VNCA + Sbjct: 294 LRRVLAQVAKVA-PTDSTVLILGETGTGKELIARAI---HRQSSRSTQAFIRVNCAAIPS 349 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFGH KGAFTGA + R G SANGG +FLDE+G+L A+ Q LL+ ++E+ F Sbjct: 350 SLITSELFGHEKGAFTGAVQRRTGRFESANGGTIFLDEVGDLTAETQIALLRVLQEREFE 409 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 GS R +S D +++A T RDL V G FR+DL+ R+N++ +P LR+R++DI Sbjct: 410 RIGSSRPISVDVRVLAATHRDLEAAVEAGTFRQDLFYRLNVFPLQIPPLRERRDDIPLLA 469 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 +Y + R+A G S+R +R +F W GN REL V R Sbjct: 470 EYLIARYARTAGKSIR--NIGKRTLESFRAY---DWPGNVRELQNVVERAVILCDGETFA 524 Query: 433 LD 434 +D Sbjct: 525 VD 526 >UniRef50_C6NUI1 Putative sensory histidine kinase YfhA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUI1_9GAMM Length = 466 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/283 (36%), Positives = 146/283 (51%), Gaps = 32/283 (11%) Query: 168 ASRFAEERQQTL-DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 ASR + TL D I R+P ++++++ +VA S+ + L G +G+GK +AR Sbjct: 131 ASRETSRLRATLKDLAGQMILHRSPVMAKLVDELTRVA-HSQTSVFLTGESGSGKERVAR 189 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I A + G FV VNC + D A S LFGHVKGAFTGA + GL+R+A+GG L Sbjct: 190 AI---HAASPRAQGPFVAVNCGAIVADLAESELFGHVKGAFTGASQDHPGLIRAADGGTL 246 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEI +L Q LL+ ++E T P GS + D ++I+ T +D+ L A G FRED Sbjct: 247 FLDEIADLPLSLQVKLLRVLQEGTLRPVGSREEYRVDIRVISATHQDICALTASGAFRED 306 Query: 347 LYARINLWTFTLPGLRQRQEDI----EPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 LY R+++ +P L +R EDI + LD E+ R RR F Sbjct: 307 LYYRLHVIPLRVPSLAERPEDILLLAQHFLDREIAR--------------LRRPIQGF-- 350 Query: 403 SPQA-------TWRGNFRELSASVTRMATFATSGRITLDVVED 438 SP+A W GN REL +VT A G + + + D Sbjct: 351 SPEALDKLICRPWPGNVRELENAVTLAAALTEKGWVAAETIPD 393 >UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2 Tax=Myxococcales RepID=A9GY33_SORC5 Length = 523 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 158/514 (30%), Positives = 231/514 (44%), Gaps = 48/514 (9%) Query: 29 PTLCLCQQESLVIDRLELL----HDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWD 84 P L L QE D + +L +A SR+L E + + +P E+ V+++ +P D Sbjct: 31 PVLRLLDQEESRYDAIVVLTIPAGEAPSRALVERAR----ARAPRIELRVVDVD--DPSD 84 Query: 85 FEEVYACLHDFARGYE--FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPP 142 +++ L + + F P + ++ GT AQ W +L +A LPAR++Q P Sbjct: 85 HAKLFRALGKLSAQLKRAFPPAAWATDVLLSAGTPQAQTLWVILVQAGILPARMLQVIPA 144 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAI-ASRFAEERQQTLDFLKSGIATRNPHFNRMIE-QI 200 P P V + LD+ + I A R R + + + R + +I Sbjct: 145 AFVPHPH-PRPVREVRLDIEGFPEIRALREEVVRLRAEARARDTVLVGESEPMRFLRARI 203 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 +VA + P+L+ G TG GK AR I E + G F+ NC+ S LF Sbjct: 204 ARVA-ATDVPVLIVGETGTGKELAARAIHEHSP---RARGPFIAENCSVFAEGVLASELF 259 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH GAFTGA R G+ A+GG LFLDEIGEL QA LL+ +++ T G + ++ Sbjct: 260 GHEAGAFTGAAGRRRGVFEQAHGGTLFLDEIGELSPRVQASLLRVLQDGTLRRVGGEAKI 319 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD-YEVERH 379 D +++A T RDL +V EG FREDLY R+ +P LR R DIE + + E Sbjct: 320 ELDVRVLAATHRDLAAMVEEGTFREDLYYRLRGAIIEVPPLRARGGDIEVLVGAFLDEVQ 379 Query: 380 ASLTGDSVRFNTEA-RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV--V 436 + G + EA RR + Q W GN REL A V R F T+DV + Sbjct: 380 SRRKGRGLEVTREALRRLY-------QHAWPGNVRELRAEVQRWGVFCEH---TVDVRDL 429 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL--SAAGRQL 494 EI + P+A A GA E V + S +A GR L Sbjct: 430 APEI---------ASPAARPASGGAGGIARATASEAGGEEVAPLAETVASAERAAIGRAL 480 Query: 495 ----FDVSRQGKASVNDADRLRKYLARFGLTWEA 524 ++SR +A D + L++ +A + L EA Sbjct: 481 EVHEGNLSRAARALAIDRNTLKRKMAAYRLGKEA 514 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 157 bits (396), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 163/309 (52%), Gaps = 25/309 (8%) Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAP--ILLNGPTGAGKSFLARRILELKQARHQ 237 + L GI R+P F ++ I V S AP +L+ G +G GK +AR I +++ Sbjct: 330 EVLFEGIVGRSPVFLSVLHSINMV---SAAPSSVLILGESGTGKELIARCIHRQSPRKNK 386 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 + VNCA L + S LFGH KGAFTGA + R G A+GG +FLDEIGEL + Sbjct: 387 ---PLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTIFLDEIGELPIE 443 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 Q LL+ ++EK F G + + D ++IA T R+L + VAEG+FR DLY R+N++ Sbjct: 444 SQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLDLYYRLNVFPVE 503 Query: 358 LPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELS 416 LP LR+R+EDI + V++ + L+ + + +A +A ++ W GN RE+ Sbjct: 504 LPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSY------DWPGNIREME 557 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEH 476 + R + T+G I + ++ ++P T + A+ I + M++EH Sbjct: 558 HVMER-SLLMTTGTI--------LKQIMLPKMAAQPVG-TTISSADGNRIKTLEEMEIEH 607 Query: 477 VIAICRQAK 485 ++ + + K Sbjct: 608 ILQVLKSCK 616 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 96/266 (36%), Positives = 146/266 (54%), Gaps = 17/266 (6%) Query: 176 QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 Q +++ I ++ +++QI++VA + + +L+ G TG GK +AR I Q + Sbjct: 337 QIDVEYKHEEIIGKSEAIRNVLQQIQQVA-PTDSTVLILGETGTGKELIARAIHNAGQRK 395 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 + A ++VNCA L + LFGH KGA+TGA S+ G +ANG +FLDEIGEL Sbjct: 396 AR---AMIKVNCAALPAALIEAELFGHEKGAYTGAVSSQIGRFEAANGSTIFLDEIGELP 452 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 + Q+ LL+ I+E F G+ + V +D ++IA T L+Q V EGKFREDLY R+N++ Sbjct: 453 LELQSKLLRVIQEGQFERLGNSKPVKADVRVIAATNVSLKQAVKEGKFREDLYYRLNVFP 512 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDSV----RFNTEARRAWLAFATSPQATWRGN 411 +P LR RQEDI + VE + + G ++ R N E +L W GN Sbjct: 513 IFVPPLRDRQEDIPLLVWAMVEEFSKVFGKTIERIPRKNMEIMERYL---------WPGN 563 Query: 412 FRELSASVTRMATFATSGRITLDVVE 437 REL V R + G + +D+++ Sbjct: 564 IRELRNLVERAMILSNGGTLVVDILD 589 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 140/260 (53%), Gaps = 11/260 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I + +P + + ++++A S IL+ G +G GK +AR + Q + GAFV V Sbjct: 143 ILSGSPVMRSVFDLLDRIA-DSDTSILITGESGTGKELVARAV---HQRSRRSEGAFVAV 198 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + S LFGH +GAFT A+ +R GL A+GG LFLDEIGEL Q LL+A Sbjct: 199 NCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHGGTLFLDEIGELPIGLQPKLLRA 258 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+ P G+D ++ D +LIA T RDL + E +FREDLY RIN+ LP LR R Sbjct: 259 LQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRFREDLYYRINVVHVDLPPLRSRG 318 Query: 366 EDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 D+ + +E A++ ++ + A +A+A W GN REL + R Sbjct: 319 ADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYA------WPGNVRELQNCIERAVA 372 Query: 425 FATSGRITLDVVEDEINRLR 444 A IT+D + ++I R Sbjct: 373 LARYDHITVDDLPEKIRTYR 392 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 133/236 (56%), Gaps = 9/236 (3%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + + I+K+A + A +L+ G +G GK +A I Q + + F++ NCA L Sbjct: 253 VFKMIDKIA-PTNATVLILGESGVGKELVANAIHYKSQ---RAASPFIKFNCAALPESIV 308 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH +GAFTGA +R+G AN G +FLDE+GEL QA LL+ ++EK F G Sbjct: 309 ESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLLRILQEKEFERVG 368 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 ++ + +D ++IA T R+L + + EGKFREDL+ R+N++ T+P LR+R+ DI DY Sbjct: 369 GNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRERKSDILLLADYF 428 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 VE++ + G VR R + A + W GN REL V R + G I Sbjct: 429 VEKYNQMNGKGVR-----RISTTAIDMLMRYHWPGNVRELENCVERAVILSDDGVI 479 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 99/281 (35%), Positives = 150/281 (53%), Gaps = 17/281 (6%) Query: 161 LSRYNAIASRFAEER---QQTLD--FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 L N + EE+ QQ + + + I P R+ + +V+ +++ +L+ G Sbjct: 735 LKEINGYKEKLEEEKLYLQQEISSVYTHTDIIGAGPEMQRVFHMLSQVSF-AQSTVLILG 793 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 TG GK +AR I +++ V+VNCA L + S LFGH +G+FTGA E R Sbjct: 794 ETGTGKELIARAIHNGSPRKNKL---MVKVNCAALPANLIESELFGHERGSFTGAIERRI 850 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 G AN G LFLDEIGE+ D Q LL+AI+E+ G + +D ++IA T R+L+ Sbjct: 851 GKFELANHGTLFLDEIGEMPLDLQVKLLRAIQEREIERIGGKSTIKTDVRIIAATNRNLQ 910 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEAR 394 + VAEG+FR DLY R+N++ LP LR R+EDI + +ER A TG +++ ++ A Sbjct: 911 KEVAEGRFRSDLYYRLNVFPIVLPPLRDRKEDISLLAAHFIERFARSTGRKNIKLSSTAM 970 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 + A+ W GN REL + R + T G I ++ Sbjct: 971 KQLTAY------NWPGNVRELEHVLER-SILLTQGNIIREI 1004 >UniRef50_C3QZU6 RteB n=5 Tax=Bacteroidales RepID=C3QZU6_9BACE Length = 428 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 137/244 (56%), Gaps = 9/244 (3%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P + ++++ VA+ S IL+ G +G GK +AR E+ H+ S ++ V+C Sbjct: 131 SPQALELYKKLKLVAL-SDYSILIRGASGVGKEHVAR---EIHDQSHRHSKPYITVDCGA 186 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + A S FGH KGA+TGA GL R+A+GG LFLDEIG L Q +LL+A++EK Sbjct: 187 IPEELAASEFFGHRKGAYTGAESDTPGLFRAADGGTLFLDEIGNLSYKTQTLLLRALQEK 246 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 T+ P GS + + + +LIA T +L + + EG+FREDL+ R+N +T TLP L + +EDI Sbjct: 247 TYKPLGSTHEYAFNIRLIAATNENLEKAIKEGRFREDLFYRLNEFTLTLPRLSECKEDIL 306 Query: 370 PNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 P ++ + R + F R A A P W GN REL ++ A A S Sbjct: 307 PMANFFLRRASEKL--KRHFQGFDRLAETALEQYP---WFGNIRELKNTINCAALIAESQ 361 Query: 430 RITL 433 IT+ Sbjct: 362 WITV 365 >UniRef50_Q1IMW7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMW7_ACIBL Length = 463 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 96/260 (36%), Positives = 133/260 (51%), Gaps = 18/260 (6%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----A 241 + TRN M+EQ +K A + IL+ G +G GK +A+ I H +S Sbjct: 143 VVTRNAALAAMLEQAKKAAESDKTTILIQGESGTGKEVMAKTI-------HYYSPRAQQP 195 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 V +NCA L S LFG+ GA+T AR +EGLL A+ G LFLDEIG + QA Sbjct: 196 LVSLNCAALPDTLLESELFGYEPGAYTDARRRKEGLLEKAHAGTLFLDEIGNMSFSVQAK 255 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ +EE F G R + D ++IA T + L+ V+ G+FR+DL+ R+N+ +P L Sbjct: 256 LLRVLEEGNFMRLGGTRTIQVDVRIIAATNKVLKDAVSRGEFRDDLFYRLNVMPLFIPPL 315 Query: 362 RQRQEDIEP-NLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R+R+ED P LD + L + EA A+ TW GN REL + Sbjct: 316 RERKEDTVPIALDMMKRFNKDLKKNFTGMTPEAAECLRAY------TWPGNIRELRNVME 369 Query: 421 RMATFATSGRITLDVVEDEI 440 R AT G I+LD + EI Sbjct: 370 RTMILATHGDISLDDLPHEI 389 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/251 (37%), Positives = 136/251 (54%), Gaps = 19/251 (7%) Query: 193 FNRMIEQIEK---------VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 F R+I + EK V +S++ +L+ G +G GK +A + E R G FV Sbjct: 162 FGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRRE---GPFV 218 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 ++NCA L S LFGHVKGAFTGA +SR G A+GG LFLDEIGE+ Q LL Sbjct: 219 KLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLL 278 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ F G + V D ++IA T RDL+Q + EG FR+DLY R+ + TLP LR+ Sbjct: 279 RVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRE 338 Query: 364 RQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 RQ D+ + +ER+ + G +++ +EA + L + + GN REL + Sbjct: 339 RQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNY------HYPGNIRELQNIIEHA 392 Query: 423 ATFATSGRITL 433 A RI L Sbjct: 393 ALLCNDSRIDL 403 >UniRef50_A0L4D4 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=cellular organisms RepID=A0L4D4_MAGSM Length = 457 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/242 (37%), Positives = 134/242 (55%), Gaps = 11/242 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + T +P +++ Q+ +V+ S A +L+ G +G GK +AR + Q + +G FV + Sbjct: 133 LVTADPAMLKLLGQVRRVS-NSNATVLIQGESGTGKELMARYV---HQVSDRANGPFVAI 188 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L + S LFGH+KGAFTGA R+G ANGG +FLDEI E+ + QA LL+ Sbjct: 189 NCAALPENLLESELFGHIKGAFTGATSDRKGKFLQANGGTIFLDEISEMTLNLQAKLLRV 248 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++EK P G ++ D ++IA T RDL++ A+G FREDLY R+N++ + LRQR Sbjct: 249 LQEKEVDPVGGKHPIALDVRVIASTNRDLKEYAADGLFREDLYYRLNVFPVFITPLRQRP 308 Query: 366 EDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 +D+ D +R G + + F+ A A + + W GN REL V R Sbjct: 309 KDVVLLADLFRQRFIKELGRNDIPFDAAAMDALVRY------RWPGNIRELENVVQRALL 362 Query: 425 FA 426 A Sbjct: 363 IA 364 >UniRef50_Q1QCZ5 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=Q1QCZ5_PSYCK Length = 579 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/267 (36%), Positives = 143/267 (53%), Gaps = 10/267 (3%) Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 +S+AP+ L+G +G GK +AR I +L R G+FV VNC + + S FGH KG Sbjct: 162 RSQAPVFLSGASGTGKEVVARLIHDLSPRR---DGSFVPVNCGAIPSELMESEFFGHKKG 218 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA ++GL + ANGG LFLDE+ +L Q LL+AI+EKT G ++V D + Sbjct: 219 SFTGAVADKQGLFQQANGGTLFLDEVADLPLAMQVKLLRAIQEKTVRAIGDTKEVPVDIR 278 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +++ T +DL QLV G FR+DLY RIN+ LP L R++DI P L +L + Sbjct: 279 ILSATHKDLNQLVQTGLFRQDLYYRINVIELKLPTLNARRDDI-PVL---ATHFLALIAE 334 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + ++ A Q + GN REL + R T A + T+D+ ++ L Sbjct: 335 EWQLESKPLLTAEACLRLQQHDFAGNVRELRNVLERAVTLAETS--TIDISHLGLSDLNV 392 Query: 446 NWQESRPSALTALLGAEA-ENIDLFDR 471 + Q P + +++ ENID DR Sbjct: 393 HQQAHMPQKINEDNASDSIENIDKDDR 419 >UniRef50_Q311G4 DNA-binding protein Fis / transcriptional regulator, Fis family n=10 Tax=Desulfovibrionales RepID=Q311G4_DESDG Length = 576 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 92/226 (40%), Positives = 131/226 (57%), Gaps = 9/226 (3%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++ Q+ +V SRA LL G +G GK LA I QA + +++NCA L D Sbjct: 267 VLNQVAQVG-PSRATALLRGESGTGKELLAEAI---HQASPRRDMPLIKLNCAALPSDLV 322 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFG+ KGAFTGA ++++GL A+ G LFLDEIGEL A QA +L+AI+E+ G Sbjct: 323 ESELFGYQKGAFTGAVQNKKGLFELAHKGTLFLDEIGELSASAQAKVLRAIQEQEIQRLG 382 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S++ +S D +LI T + L +LV G FREDLY RIN++ +P LR+R+EDI P ++ Sbjct: 383 SEQTISVDVRLICATHQHLEELVESGSFREDLYYRINVFPVFIPPLRERREDILPVAEHF 442 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 ++ +A S++ R + A Q W GN REL + R Sbjct: 443 LKEYAEEYQKSIK-----RISTPAIDLLTQYHWPGNIRELKNCIER 483 >UniRef50_B9M8I2 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=cellular organisms RepID=B9M8I2_GEOSF Length = 587 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 141/255 (55%), Gaps = 12/255 (4%) Query: 182 LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA 241 L S I + F E +++ A KS+ +LL G TG GK AR L AR + S Sbjct: 234 LPSDIVGNSKIFCTAYELLQQAA-KSQITVLLLGETGVGKEVFARS-LHNSGARSKES-- 289 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 F+ +NCA + D S LFG KGA+TGA +R G ANGG LFLDEIG+L QA Sbjct: 290 FIAINCAAIPHDLVESELFGVEKGAYTGAMTARAGRFERANGGTLFLDEIGDLPFSAQAK 349 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ ++E G + D +L+A T DLRQLV EG+FR DLY R+N + +P L Sbjct: 350 LLRVLQEGEIERIGDHKTRKVDVRLVAATNVDLRQLVKEGRFRSDLYYRLNAFQINIPPL 409 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R+R+EDI +E+++++ G +R F +A+RA L++ W GN RE+ + Sbjct: 410 RERKEDIPLLAKRFLEKYSAIHGKKLRGFTDKAKRALLSY------QWPGNIREMQNMIE 463 Query: 421 RMATFATSG-RITLD 434 R A SG RI L+ Sbjct: 464 RGVILAPSGTRIELE 478 >UniRef50_C6W7H2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7H2_DYAFD Length = 457 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 113/353 (32%), Positives = 178/353 (50%), Gaps = 35/353 (9%) Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFL--KSGIATRNPHFNRMIEQIEKVAIKSRA 209 GEVT + + A A+ +Q+LD++ KS +A + + R++ + Sbjct: 124 GEVTSV-----KTAPKAKSNAQSGKQSLDYIEGKSKVAKQLFEYVRLVAPTD-------M 171 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +++ G +G GK +A+ I L + + G FV ++C +L D A S LFGH KGAFTG Sbjct: 172 SVIIQGESGTGKEHVAKSIHRLSK---RADGPFVAIDCGSLSKDLAASELFGHKKGAFTG 228 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + + G +A+GG LFLDEIG L D Q LL+A++E+ P GS +QV D +LIA Sbjct: 229 ALQDKIGQFEAADGGTLFLDEIGNLSYDVQIKLLRALQERIIVPIGSTQQVKVDVRLIAA 288 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR- 388 T DL A G FREDLY R+N + +P LR+R ED+ + + V++ +VR Sbjct: 289 TNEDLIANAATGDFREDLYHRLNEFKIEVPALRKRGEDLPIFVQHFVDKANEELERNVRE 348 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 + E + + W GN REL+ + R+ + TL + E+ + Q Sbjct: 349 LSKEVMDVFQKY------DWPGNLRELNNVIKRLVLLSKEEVATLSALPSEMITAMEDQQ 402 Query: 449 ESRP-SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + P S L AL + ++ +E V+ R KS +A +L ++ R+ Sbjct: 403 KPAPGSDLKALQ-------ETHEKEMIEKVLQEVRYNKSKAA---KLLNIDRK 445 >UniRef50_B1NME5 Putative trancriptional regulator n=1 Tax=uncultured Acidobacteria bacterium cosmid p2H8 RepID=B1NME5_9BACT Length = 451 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/293 (37%), Positives = 157/293 (53%), Gaps = 13/293 (4%) Query: 139 SSPPR-KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMI 197 S PPR E+P + ++D L R A+++ E++ ++ + I R+ + Sbjct: 86 SQPPRYTAERPADEATLELLDHFLERRAAVST---EDQSPSVQRFREMIG-RDEKMLIVF 141 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 E I + A KS +L+ GPTG+GK +AR I EL + + F VN A L S Sbjct: 142 EWI-RTAAKSDISVLILGPTGSGKEVVARMIHELSR---RSVAKFQAVNTAALPDTLFES 197 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 +FG+ KGAFTGA + + G L AN G LFLDEIG++ QA LL+ +EE+ F G Sbjct: 198 EIFGYEKGAFTGAYDRKPGRLELANEGTLFLDEIGDMSLIAQAKLLRVLEERRFERLGGQ 257 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + +S DF+LI+ T R L Q V +G+FREDLY R+N + LP LR+RQ DI + Sbjct: 258 KSISVDFRLISATNRPLEQFVRDGRFREDLYYRVNAFAIRLPSLRERQVDIPVLAQRFLA 317 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 R+ + G + + AR A T W GN REL ++V+R A + GR Sbjct: 318 RYCAAQGLPLDSKSFAREALDLLVTY---QWPGNIRELESTVSR-AALSAPGR 366 >UniRef50_A7HHU4 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=A7HHU4_ANADF Length = 475 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 139/256 (54%), Gaps = 10/256 (3%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ R+ R+ IE + S + +L+ G +G GK +AR I+ R +G FV Sbjct: 144 GVMCRSQAMTRVFRLIETLQ-HSESTVLVTGESGTGKEVMAR-IIHAHSPRR--NGPFVA 199 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VN A L + S LFGHV+GAFTGA R G +A GG LFLDE+G+L Q LL+ Sbjct: 200 VNAAALPAELLESELFGHVRGAFTGAIRDRLGRFEAAEGGTLFLDEVGDLPLPVQVKLLR 259 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E T+ G D + + ++IA T RDLR+ VA G FREDLY R+ ++ LP LR R Sbjct: 260 VLQEHTYERVGDDAERRTSARIIAATHRDLRRAVAAGTFREDLYYRLRVFPVELPPLRAR 319 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 +EDIEP + R + T ++RF+ +A R L++ W GN REL ++ AT Sbjct: 320 REDIEPIARVLLGRVGARTARALRFSPDALRVLLSY------DWPGNVRELENALEYAAT 373 Query: 425 FATSGRITLDVVEDEI 440 + + + EI Sbjct: 374 VCQGQTLQPEDLPPEI 389 >UniRef50_C4S4Y6 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=3 Tax=Yersinia RepID=C4S4Y6_YERBE Length = 752 Score = 155 bits (393), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 98/252 (38%), Positives = 136/252 (53%), Gaps = 22/252 (8%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GAFVEV 245 +P FN+++ +E+VA S+ +L+ GPTG GK +A+ + HQ S F+++ Sbjct: 16 SPAFNQLLRLVERVA-PSQQSLLICGPTGCGKEVIAQLV-------HQRSKNPLAPFIDL 67 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + + LFGHVKGAFTGA R G L G LFLDEIGE+ Q LL+A Sbjct: 68 NCGAIPEHLVEAELFGHVKGAFTGASGDRRGHLEMVGSGTLFLDEIGEMPLSVQPKLLRA 127 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +E +TF P GS +++A T R+L V G FREDLY R+ + T +P L QR+ Sbjct: 128 LETRTFRPIGSSDVRHFKGRVVAATHRNLLTQVKSGVFREDLYYRLGVITLDIPALSQRR 187 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI P L +E ASL + FN A + Q W GN REL V R+A Sbjct: 188 EDI-PAL---IEHFASLQTHRLVFNAH------AMSHLQQYPWPGNVRELRNLVDRLAAL 237 Query: 426 ATSGRITLDVVE 437 + + IT +V++ Sbjct: 238 SDTHLITREVLD 249 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 95/225 (42%), Positives = 125/225 (55%), Gaps = 11/225 (4%) Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 EQI +VA S +LL G +G GK A I A + G F+ +NCA L + S Sbjct: 208 EQISQVA-PSSTTVLLYGESGTGKELAAHAI---HSAGKRSKGPFISLNCAALPENLIES 263 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGH KGAFTGA R+G A+GG LFLDE+GEL QA LL+ ++E+ F G Sbjct: 264 ELFGHEKGAFTGASGIRKGRFELADGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGT 323 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 +S D ++I T RDL ++V EG FR DLY R+N++ +P LR+RQ DI+P Y V+ Sbjct: 324 ESLSVDVRIITATNRDLARMVEEGTFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVD 383 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQ-ATWRGNFRELSASVTR 421 ++A+ G S R LA Q TW GN REL + R Sbjct: 384 KYAAANGRS------GIRISLAVMDMLQRYTWPGNIRELENVMER 422 >UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYB0_9GAMM Length = 509 Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 131/456 (28%), Positives = 198/456 (43%), Gaps = 37/456 (8%) Query: 77 IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARL 136 ++L P + ++Y + + +KE + ++ GT W LL + + ++ Sbjct: 77 VKLETPVHYGDIYQASNRLLGQLVNEFDKEQISVLVSPGTPQMHAVWLLLCKTTF-KLQM 135 Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 +QSSP G V +D+ E TL L SG P F + Sbjct: 136 LQSSPE---------GGVGDVDVPFDIAADFIPSLLAESDATLRRLASGQTATPPAFTDI 186 Query: 197 IEQ--------IEKVAIKSR-APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNC 247 I Q I+ I R P+L+ G +G GK AR I E + + V VNC Sbjct: 187 ITQSPVLKAQIIKAQKIAERDIPVLILGESGTGKELFARAIHEASRRGGESGSELVSVNC 246 Query: 248 ATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 + + S LFGH KGAFTGA + + G A+GG +FLDE GEL A+ Q LL+ + Sbjct: 247 GAISQELVDSELFGHKKGAFTGAEKDKAGYFEVADGGTIFLDEFGELPAETQVRLLRVLN 306 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 + TF G + D ++IA T RDL + EG FREDL+ R+ + LP LR+R+ D Sbjct: 307 DGTFARVGDTEERKVDVRVIAATNRDLMAEMVEGNFREDLFYRVAVGVINLPPLREREGD 366 Query: 368 IEPNLDYEVERHASLTGDSVRFNTEARRAWL---AFATSPQATWRGNFRELSASVTRMAT 424 + D +E + +++ + + L A W GN REL AS+TR + Sbjct: 367 LMLLTDKLLE---GINNEALGLDPGYKHKKLSAKARNIIKSHGWPGNVRELQASLTRASV 423 Query: 425 FATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQA 484 ++ IT E E+ RP+ LLG +N FD +L + Sbjct: 424 WSGGETIT----EREMREALL----ERPAKAGDLLGRSLDNT--FDIQELIKDLKKHYIK 473 Query: 485 KSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 K+L+ G K +N+ L K++ GL Sbjct: 474 KALAENGNN--KTKSAEKLGLNNYQTLNKWMEDVGL 507 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 129/229 (56%), Gaps = 12/229 (5%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSG-AFVEVNCATLRGDTAMSTLFGHVKG 265 +R P+L+ G +G GK +AR + R F+ FV V+C +L S LFGH KG Sbjct: 167 TRTPVLICGESGTGKELVARAM----HFRGGFAKRPFVAVDCGSLVPTLIESELFGHEKG 222 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA + +EGL ++ANGG +FLDEIGEL D QA LL+ +++K P GS++ V D + Sbjct: 223 AFTGAIKPKEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVR 282 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T RDL G FR+DLY R+N+ T LP LR+R+ DI + + ++R S + Sbjct: 283 VIAATNRDLEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDR-PSAGRE 341 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 V ++A ++ + Q W GN REL + R I +D Sbjct: 342 GVEVTSQAMKSLM------QYDWPGNVRELENCIERAVALGNGEVIDVD 384 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 13/257 (5%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRI-LELKQARHQFSGAFV 243 + ++P F +++ + KVA + A +LL G +G GK +A+ I + K+A+ G FV Sbjct: 192 NLVGQSPSFQAVLKTVMKVA-STDATVLLFGESGTGKELIAKTIHFQSKRAK----GPFV 246 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA + + + LFG KGAFTGA + R G ANGG +FLDEI EL Q LL Sbjct: 247 AINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFLDEIAELPLSLQPKLL 305 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+T P GS + + D +LI+ T +DL + + +G FREDL+ R+N+ +P LR+ Sbjct: 306 RVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWRLNVIPIYIPPLRE 365 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+EDI ++Y ++ ++ SV + EA + +++ W GN REL+ ++ R+ Sbjct: 366 RKEDIPLLVEYYLKSFCNIYRKSVSIDEEALKVLVSY------DWPGNVRELANTIERLV 419 Query: 424 TFATSGRITLDVVEDEI 440 S +I + + D + Sbjct: 420 VMTESSKIKVYDLPDTV 436 >UniRef50_A4ACX8 Propionate catabolism operon regulatory protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4ACX8_9GAMM Length = 533 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 136/241 (56%), Gaps = 8/241 (3%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P +R+ E A+ S A +LL G +G GK +AR E+ QA GA V +NC + Sbjct: 210 SPQMSRVAELARTYALGS-AAVLLQGESGTGKEHIAR---EIHQASDYRDGALVAINCGS 265 Query: 250 LRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 + + S LFG+V GAFT +R R GL+ ANGG+L+LDE+GE+ +Q LL+ ++E Sbjct: 266 IPNELFESELFGYVDGAFTSSRRGGRVGLVEQANGGVLYLDEVGEMPLAQQVKLLRVLQE 325 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 ++ P G R++S DF++IA T DL++ V G+FR+DLY R+N++T LP LR+R ED+ Sbjct: 326 RSVRPVGGTRELSLDFKVIAATNCDLQEAVEAGQFRDDLYYRLNVFTLRLPPLRERPEDV 385 Query: 369 EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 ++ + +A + T R F Q W GN REL R+A A Sbjct: 386 SAIAEHYLAEYARQYDVELDVPTLMARLKAPFE---QYRWPGNVRELQNFAERLAVNAAH 442 Query: 429 G 429 G Sbjct: 443 G 443 >UniRef50_A1AQJ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AQJ0_PELPD Length = 473 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/197 (43%), Positives = 118/197 (59%), Gaps = 5/197 (2%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 S + + +P + + + E +A +SR P+++NG TG GK +A+ I G FV Sbjct: 151 SALVSVSPKMSAIFQYCEVIA-RSRQPVIINGETGTGKELIAKAI----HTASGLKGKFV 205 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VN A L + TLFGH KGAFTGA ++R GL+ A+GG LFLDEIG+L Q LL Sbjct: 206 PVNAAGLDDNMFSDTLFGHKKGAFTGADQARAGLIAQASGGTLFLDEIGDLHEVSQVKLL 265 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ +Y GSD + SD ++I T RDLR+L A GKFR DLY R+ LP LR+ Sbjct: 266 RLLQEQEYYQVGSDMPLVSDARVIVATNRDLRELTATGKFRNDLYFRLCTHQVQLPPLRK 325 Query: 364 RQEDIEPNLDYEVERHA 380 R EDI L++ +E A Sbjct: 326 RAEDISVLLNHFLEESA 342 >UniRef50_B9XM81 Sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XM81_9BACT Length = 501 Score = 155 bits (392), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/267 (36%), Positives = 147/267 (55%), Gaps = 15/267 (5%) Query: 174 ERQQTLDFLKS----GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 E + LD ++S I +P ++++QIE VA ++A +L+ G +G GK +AR I Sbjct: 164 ENEYLLDEIRSERFGAIIASSPALKKVLQQIEVVA-PTQANVLILGESGTGKELVARAIH 222 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 +L + + + V VNCA++ + S FGHV+GAFTGA + R G ANGG LFLD Sbjct: 223 DLSERKGK---PLVRVNCASIPKELFESEFFGHVRGAFTGAIKDRVGRFELANGGSLFLD 279 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGE+ D Q+ LL+ ++E F G DR + + ++IA T RDL G+FR DLY Sbjct: 280 EIGEIPLDLQSKLLRVLQEGQFERVGEDRTRTVNVRIIAATNRDLLTEAKAGRFRLDLYY 339 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATW 408 R++++ +P LR+R EDI P ++ V++ A+ G + R R + W Sbjct: 340 RLSVFPIEIPALRERPEDIGPLAEHFVKQSANRLGVTRPRLTKADVRELEGY------DW 393 Query: 409 RGNFRELSASVTRMATFATSGRITLDV 435 GN REL V R A SGR+ ++ Sbjct: 394 PGNVRELQNVVERAVILARSGRLKFEL 420 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 103/309 (33%), Positives = 157/309 (50%), Gaps = 30/309 (9%) Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 R+ +L+ G +G GK A I + + G FV VNCA + D S FG+ +GAF Sbjct: 398 RSTVLIRGESGTGKELFAHAI---HNSSARSDGKFVIVNCAAIPEDLLESEFFGYDEGAF 454 Query: 268 TGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 TGA++ + G ANGG LFLDEIG++ QA LL+ ++E+ FY G + ++ D ++ Sbjct: 455 TGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRI 514 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T RDL ++V EG+FREDLY R+N+ + +P LR+R D+E + S+ G S Sbjct: 515 IAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTS 574 Query: 387 VR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + + +A+ + L Q W GN REL + R TFA G I ++ + D + Sbjct: 575 ITGISPKAKESLL------QYNWPGNVRELKNILERAMTFAEHGNIQVEDLPDYL----- 623 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 + L + E L + +LE + QA A +L +SR G Sbjct: 624 ---------IDQLTIPKKEKNGLAEDAELEAIRKALTQANGNKAQAARLLGISRSGL--- 671 Query: 506 NDADRLRKY 514 ++L+KY Sbjct: 672 --YEKLKKY 678 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 161/311 (51%), Gaps = 27/311 (8%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + E+I++VA S+A +LL G +G GK +A I +L R F FV V+CA L Sbjct: 157 VFEKIKQVA-SSKATVLLEGESGTGKELVAHAIHQL-SPRKNFP--FVVVHCAALSPQLL 212 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA E R G A G LFLDEIGE+ Q LL+A+ EKT G Sbjct: 213 ESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVG 272 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S++ V+ D ++IA T ++L ++V EGKFREDL+ R+N+ +P LR+R+EDI Sbjct: 273 SNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAF 332 Query: 376 VERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + A+ G + R + EA + L + W GN REL ++ I Sbjct: 333 LAEFAAENGKKIDRLSPEAMKILLEY------DWPGNVRELKMAIEHGVVLCQGEEIR-- 384 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE-----HVIAICRQAKSLSA 489 D R+R RP L+A + E+ D F+ + E H + +C Q K SA Sbjct: 385 -PRDLPERIRI----PRP-LLSAPISVESSEPDCFNLKEAEKRLILHALRVC-QGKKTSA 437 Query: 490 AGRQLFDVSRQ 500 A + +SR+ Sbjct: 438 AKK--LGISRK 446 >UniRef50_C1SPF3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPF3_9BACT Length = 451 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 144/257 (56%), Gaps = 14/257 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL-KQARHQFSGAFVE 244 I T P + + ++IEK+A + A +++ G G GK +AR I L K++R+ +FVE Sbjct: 140 IGTSKPLLD-LRKKIEKIA-PTNAWVMITGENGTGKEHVARLIHMLSKRSRN----SFVE 193 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NCA + + S +FGH KGAFTGA +++G + G +FLDEIG++ QA LL+ Sbjct: 194 INCAAIPSELLESEMFGHEKGAFTGAHMAKKGKFEEGDNGTVFLDEIGDMEMSAQAKLLR 253 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 +E TF G + VSSDF+LI T ++L +++G FREDLY RIN+ +P LR+R Sbjct: 254 VLENNTFSRVGGNASVSSDFRLITATNKELEDEISDGNFREDLYYRINVVPLVVPPLRER 313 Query: 365 QEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +DI +++ ++ S G + + + E ++ F W GN R+L V RM Sbjct: 314 HDDIPLLVNHFIKEACSFNGIELKKVDEELMHLFVQFE------WPGNVRQLKNLVERMV 367 Query: 424 TFATSGRITLDVVEDEI 440 + ++LD D I Sbjct: 368 VLSEDSVMSLDDAPDFI 384 >UniRef50_C7LSB8 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSB8_DESBD Length = 562 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 129/237 (54%), Gaps = 11/237 (4%) Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 D + I +P ++ I A S IL+ G TG GK A I E + + Sbjct: 130 DIKRDAIIGTSPCLEHCLDHIATAA-NSNVNILILGETGTGKELFANAIHENST---RAT 185 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 +F+ V+C + A S LFGH +G+FTGA ESR+GL R A+GG +FLDEIG+L D Q Sbjct: 186 NSFIVVDCTNIPRTLAESLLFGHERGSFTGAAESRDGLFRQADGGTIFLDEIGDLDLDVQ 245 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 LL+ ++E+ F P S ++V+S+F+L+A T R+L +V G+FR+DLY R+ LP Sbjct: 246 KSLLRVLQERRFRPLSSKKEVASNFRLVAATNRNLEGMVKRGEFRKDLYHRLCTNVIQLP 305 Query: 360 GLRQRQEDIEPNLDYEVER-HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 LR+R+EDI P Y V + A L + + E A + W GN REL Sbjct: 306 PLRERKEDILPIASYHVRQICAELGCEEKEISYELHHALTLY------DWPGNVREL 356 >UniRef50_Q1D326 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Cystobacterineae RepID=Q1D326_MYXXD Length = 447 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 108/294 (36%), Positives = 157/294 (53%), Gaps = 21/294 (7%) Query: 154 VTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRN----PHFNRMI---EQIEKVAIK 206 V + DL L A+A +ER L +S + R PH +M+ + +E++A Sbjct: 105 VELDDLVLRARRAVADLQLQER---LRLAESELGGRRRLSRPHSPKMLAALQMLERIAKA 161 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 R+P+LL G TG GK +AR + L+ + G+FV VNCA L S LFGH +GA Sbjct: 162 PRSPVLLLGETGVGKEVIARHLHALQGGQ----GSFVHVNCAALPATMVESELFGHERGA 217 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FT AR +R GL+ A GG+LFLDE+GEL QA LL +++ F G ++SS ++ Sbjct: 218 FTDARTARRGLVEVAAGGVLFLDEVGELPLQLQAKLLTFLDKGAFRRLGGTAELSSSARV 277 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV-ERHASLTGD 385 + T RDL + VAEG+FREDLY R++++ +P LR+R+ED+ P V E A L Sbjct: 278 VTATNRDLTKEVAEGRFREDLYFRLSVFRVDIPPLRERREDLLPLAQSLVAELGAELGRR 337 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 V F++ AR A + + GN REL + R + L +E + Sbjct: 338 PVSFSSAAR------ARLERYPFPGNVRELRNVLERALVLEAGPELELAALEPQ 385 >UniRef50_A9F9G3 Sigma-54 dependent transcriptional regulator n=2 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F9G3_SORC5 Length = 477 Score = 154 bits (390), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 165/338 (48%), Gaps = 26/338 (7%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+AT +P + VA + P++L G +G GK +AR + A G FV Sbjct: 156 GLATFSPELAERFAALRAVA-PAPIPVVLQGESGTGKEVVARAV----HALSGRPGPFVA 210 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NC L S LFGH KGAF+GA E R GL+R+++ G LFLDEIG+L A Q L+ Sbjct: 211 INCGALPESLIESELFGHKKGAFSGAAEDRPGLIRASDRGTLFLDEIGDLPAASQTAFLR 270 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E G+ R V D +++ T RDL +V G FR DL+AR++ + LP LR+R Sbjct: 271 VLQESEVVAVGATRPVKVDLRVVVATHRDLPAMVERGDFRGDLFARLSGFVLELPPLRRR 330 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 +ED+ + + R A S+ EA RA L WR N REL + Sbjct: 331 REDLGLLIAALLRRAAPDRAASISLGCEAARALLL------REWRLNVRELEKCLATAIV 384 Query: 425 FATSGRITLDVVEDE--INRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICR 482 A GR+ LD + + R + + S+P A A AE D+ + E +I + R Sbjct: 385 LAGGGRVELDHLPPPVVVPRGSHPPEASKPDAQPAERQRPAEE----DQQRREALIRLFR 440 Query: 483 QAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + +VS +A ++ +++AR+G+ Sbjct: 441 EHRG---------NVSAVARAMGKGRTQIHRWIARYGI 469 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 131/230 (56%), Gaps = 9/230 (3%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I +++P + + +VA +S + +L+ G +G GK L+R + L + +G FV + Sbjct: 208 IVSKSPAMLELFAILPEVA-RSESTVLIQGESGTGKELLSRAVHSLSS---RAAGPFVAI 263 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC L S LFGHV GAFT AR++R G A GG LFLDEIG++ Q LL+ Sbjct: 264 NCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVSPALQVRLLRV 323 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +EE+T+ P GS R V+++ +++A + RDL QLVAEG FR+DLY RIN+ LP L +R+ Sbjct: 324 LEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVKLELPTLARRK 383 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 EDI ++ + R L ++ + A A + W GN REL Sbjct: 384 EDIPLLAEHFIARLNKLRNKNILGLSHE-----ALAVFMRHNWPGNIREL 428 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 169/314 (53%), Gaps = 31/314 (9%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GAFVEV 245 +P F + ++I + A +S+AP+L+ G +G GK +A QA H S G F+ V Sbjct: 267 SPCFTKT-KKIARKASQSKAPVLITGESGVGKDIVA-------QAIHNESPITRGRFISV 318 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLK 304 NCA + S LFG+ GAFTGA + + G + A+ G LFLDEIG++ QA +L+ Sbjct: 319 NCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIELAHKGTLFLDEIGDMPLTMQAKILR 378 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 I+EK+ GS+ Q + DF+LI T +D++Q+V EG FREDLY R+ + +P LR+R Sbjct: 379 VIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHEGTFREDLYYRLYVIPIHIPSLRER 438 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 EDI + +++ + GD + + W+ T P W+GN REL + R+ Sbjct: 439 AEDIPIIVSHKIAELNNEYGDRKTID-QLVVQWM--YTQP---WKGNIRELINFLERLYV 492 Query: 425 FATSGRITLDVVEDEIN---RL-RYNWQESRPSALTALLGAEAENIDLFDRMQ--LEHVI 478 + S +TLD + D+I+ RL YN+ ++ A + L E E DR++ LEHV Sbjct: 493 LSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAES--LSEEEER----DRIKETLEHVK 546 Query: 479 AICRQAKSLSAAGR 492 +A L R Sbjct: 547 GNKTKAAKLLGISR 560 >UniRef50_A6T4B6 Sigma-54 dependent response regulator n=18 Tax=Proteobacteria RepID=A6T4B6_JANMA Length = 481 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 91/244 (37%), Positives = 129/244 (52%), Gaps = 23/244 (9%) Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK AR + +L H FV +NC + D S LFGH+KGAF+GA Sbjct: 210 VLITGESGTGKEIAARAMHKLSNRSHNH---FVPINCGAVAPDIIESELFGHIKGAFSGA 266 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 SREGL A GG LFLDE+ EL Q LL+ +EEK P G++R++ D ++IA T Sbjct: 267 ASSREGLFFYAQGGTLFLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAAT 326 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 R++ + V EG+FR+DLY R+N+ +P LR+R EDI +Y V + A G + Sbjct: 327 NRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKP 386 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTR---------------MATFATSGRITLDV 435 A FA+ +W GN REL + R + T+G +TL+ Sbjct: 387 DSA-----LFASLAGYSWPGNVRELRNLIERWLILGNISDVTAANNTGSTTTNGDVTLEA 441 Query: 436 VEDE 439 VE + Sbjct: 442 VEKQ 445 >UniRef50_B0VDC3 Type 4 fimbriae expression regulatory protein n=17 Tax=Acinetobacter RepID=B0VDC3_ACIBY Length = 473 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 92/255 (36%), Positives = 143/255 (56%), Gaps = 11/255 (4%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I+K+A +S+AP+ + G +G GK +A + L ++ G F+ +NC + + S L Sbjct: 154 IKKIA-RSQAPVFVTGESGTGKEVVANLVHRLS---NRSEGPFIAINCGAIPTELMESEL 209 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KG+FTGA + ++GL+ SA+GG LFLDEI EL Q LL+A++EK P GSD++ Sbjct: 210 FGHKKGSFTGATQDKQGLILSAHGGSLFLDEIAELPLSMQVKLLRAVQEKKIRPVGSDQE 269 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + DF++I+ + +DL LV +GKFR+DL+ RI++ LP LR+R ED+ ++ +++ Sbjct: 270 IDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLLLANHFIQKI 329 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 + TEA +L Q + GN REL + R T + T+D+ Sbjct: 330 CMEWETPPKQLTEAAETYLL-----QQHFPGNVRELRNMIERAITLSEDA--TIDISHLH 382 Query: 440 INRLRYNWQESRPSA 454 LR N SA Sbjct: 383 PAPLRANISNPFVSA 397 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 93/274 (33%), Positives = 144/274 (52%), Gaps = 13/274 (4%) Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R++ I+K++ K+ L+ G +G GK +A+ I Q + F+ VNCA + + Sbjct: 11 RILTFIDKLS-KTDTTALIMGESGTGKELVAKMI---HQKSSRAEKPFIPVNCAAIPSEL 66 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KGAFTGA+ R G AN G +FLDEIG++ Q +L+ I+EKTF Sbjct: 67 LESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEKTFERI 126 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G R + + ++IA T +DL V EG+FREDL+ R+N+ +P LR+R+EDI +Y Sbjct: 127 GGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIPLLCEY 186 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + + + G S++ E + +L + TW GN REL + R+ G I Sbjct: 187 FINKFSHKFGYSLQIKPEVMQIFLNY------TWPGNVRELENLIERLYVLNEGGNIN-- 238 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDL 468 ++D R+R+ + + L + IDL Sbjct: 239 -IKDIPERIRFGENSFQKELIPDDLNPFSSGIDL 271 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 98/248 (39%), Positives = 138/248 (55%), Gaps = 16/248 (6%) Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R ++QI +R+ +L+ G TG GK +A+ I A + AF+ V+CA L + Sbjct: 165 RTVQQIAP----ARSSVLITGETGTGKEVIAKAI---HAASTRSKKAFIAVHCAALNANL 217 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KG+FTGA E R G +A+GG LFLDEIGE+ A Q LL+ +E ++F Sbjct: 218 FESELFGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERV 277 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G + + SD +LIA T RDLR++V G+FREDLY R+++ LP LR R+EDI L Sbjct: 278 GGNETLYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALL-- 335 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQAT--WRGNFRELSASVTRMATFATSGRIT 432 +H ++ SV N + + A A + T W GN REL V RMA + + Sbjct: 336 ---QHWLIS--SVTENQLNVKGFTADAMARLCTYDWPGNVRELRNVVERMAVLSQQEYLD 390 Query: 433 LDVVEDEI 440 L + D + Sbjct: 391 LPNLPDHV 398 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 140/241 (58%), Gaps = 11/241 (4%) Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 +++ K+A +S + +L+ G +G GK A I + R+ GAF+ VNCA + + + Sbjct: 272 KEMAKIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRY---GAFIRVNCAAIPENLLEA 328 Query: 258 TLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 LFG+ KGAFTGA +E + G ANGG +FLDEIG++ D Q LL+A++E+ GS Sbjct: 329 ELFGYEKGAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGS 388 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 +R + D ++IA T R+L QL+A+ KFREDLY R+N++ +P LR+ ++D+E +++ + Sbjct: 389 ERVIDLDVRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFII 448 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 + G +V ++EA + ++ W GN REL + R A IT D Sbjct: 449 KDLNDEMGLNVNGVSSEANKILNSYH------WPGNIRELKNVLERSMNVAKGNIITKDC 502 Query: 436 V 436 + Sbjct: 503 I 503 >UniRef50_B4UM36 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. K RepID=B4UM36_ANASK Length = 465 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 99/231 (42%), Positives = 122/231 (52%), Gaps = 8/231 (3%) Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A S P+L+ G TG GK AR I E H+ FV VNCA + S LFGH Sbjct: 155 AAASDVPVLVTGETGTGKDLCARTIHERS---HRAGRPFVVVNCAAIPEALFESELFGHE 211 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA R G +A+GG LFLDE+GEL A QA LL+A+E TF P GS+R V D Sbjct: 212 KGAFTGADRKRIGRFEAADGGTLFLDEVGELAASSQAKLLRALESSTFEPVGSNRSVRVD 271 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 ++IA T RDL +A G FR+DLY R+N+ P LR+R+ D+ + R A Sbjct: 272 VRVIAATNRDLASAIARGAFRKDLYYRLNVIDLHAPPLRERRGDVPVLTAAFLARIAGRL 331 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 G V A A LA P GN REL ++ R A G I L+ Sbjct: 332 GRPVPQLEPAVVAALAAHDYP-----GNVRELQHALERAVALARGGPIRLE 377 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 126/234 (53%), Gaps = 16/234 (6%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA---- 241 I T++P ++E +VA R + L G +G GK LAR I H SG Sbjct: 152 IVTQSPAMRTVLELASRVAASPRTTVSLTGESGTGKEVLARAI-------HFASGCLPSN 204 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FV VNCA + S LFGHV+GAFTGA REG A GG + LDEIG++ QA Sbjct: 205 FVAVNCAAIPEALLESELFGHVRGAFTGAERDREGKFSLARGGTVLLDEIGDMPLPLQAK 264 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ +EE+TF G +R DF++I T RDL QLV +G+FREDLY RIN+ +P L Sbjct: 265 LLRVLEERTFEKVGDNRPQPVDFRVIVATYRDLAQLVRKGRFREDLYHRINVVPIAIPPL 324 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 R+R EDI +D+ ++ G ++ + L A S W GN REL Sbjct: 325 RERLEDIPLLVDFFLKLFRQHQGKALP-GVSKKAMDLLIAHS----WPGNVREL 373 >UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM81_THASP Length = 465 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 106/277 (38%), Positives = 145/277 (52%), Gaps = 28/277 (10%) Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 R +A++ A R + D G+ +P + RM+EQ+ + A P+LL G +GAGK Sbjct: 132 RCDALSVEVARLRSRDDD----GMVGDSPAWLRMLEQVRRAAALD-VPVLLTGESGAGKE 186 Query: 223 FLARRILELKQARHQFS----GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 +A A H++S A+V VNC L G+ S LFGH +GAFTGA REGL Sbjct: 187 VVA-------AALHRWSRRAGEAYVPVNCGLLEGELVESELFGHKRGAFTGASADREGLF 239 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 A+ G LFLDEIGEL QA LL+ ++ F P G+ + ++IA T RDL LV Sbjct: 240 ELASAGTLFLDEIGELPLACQAKLLRVLDSGEFRPLGASAVRRTGARVIAATHRDLEALV 299 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDI----EPNLDYEVERHASLTGDSVRFNTEAR 394 A G+FR DL R+++ +P LR+R+EDI E L V RH + R +A Sbjct: 300 AAGRFRHDLLYRLDVVHIVVPPLRERREDIPLLVEHLLHQAVRRHPGTP--APRVEPQAL 357 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 + + +A W GN REL V R+ FA RI Sbjct: 358 QRLIDYA------WPGNVRELRNVVERLLVFADGDRI 388 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 154 bits (389), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 93/246 (37%), Positives = 137/246 (55%), Gaps = 11/246 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + R+P R+ + IE+VA + A +L+ G +G GK +AR R Q AF++V Sbjct: 142 LVGRSPAMIRLRQIIERVA-PTDATVLITGESGTGKEMVAREFYRRSPRRSQ---AFIKV 197 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + S FGH +GAFTGA E REG A+ G L LDE+ E+ A+ QA LL+ Sbjct: 198 NCAAISENLIESEFFGHERGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRV 257 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+ F G R + + ++IA + RDL + V +G+FR+DLY R+N++ +P LR+R Sbjct: 258 LQEREFERVGGSRTIKVNVRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERP 317 Query: 366 EDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 EDI D+ + R A G V F AR A + + W GN REL +V R Sbjct: 318 EDIALLADHFLRRFARKHGVKVTGFADSARAALIGY------RWPGNVRELQNTVERAVI 371 Query: 425 FATSGR 430 + +GR Sbjct: 372 LSETGR 377 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 24/296 (8%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEER----QQTLDFLKSGIATRNPHFNRMIEQIEK 202 +P P + I+L +SR N AE + +D + ++N +++ EQ++K Sbjct: 104 KPFSPDQ---IELLISRVNERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKK 160 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GAFVEVNCATLRGDTAMST 258 +A +S+A +L+ G +G GK +AR I H FS F+ VNCA L S Sbjct: 161 IA-QSKASVLIQGESGTGKELVARAI-------HYFSPRCEKPFIRVNCAALAESLLESE 212 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGH +GA+TGA R G AN G L LDE+ E+ + QA LL+ +EE+ F G ++ Sbjct: 213 LFGHERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEK 272 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 + D +++A T RDL + + +G FREDL+ R+N+ LP LR+R+EDI + +E+ Sbjct: 273 TIKIDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEK 332 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++S SV+ + E R A Q W GN REL + R +S + L+ Sbjct: 333 YSSENNSSVK-SIEKR----AMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLE 383 >UniRef50_A3WNQ8 Response regulator containing CheY-like receiver, AAA-type ATPase,and DNA-binding domains n=2 Tax=Idiomarina RepID=A3WNQ8_9GAMM Length = 448 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 101/330 (30%), Positives = 162/330 (49%), Gaps = 43/330 (13%) Query: 124 FLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK 183 LL+ R L RL++ R K Q +GP Sbjct: 110 LLLSVQRVLEHRLLKQELTRFKSQQKGP-------------------------------- 137 Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 +G+ ++P ++ QIE++ +L+ G +G GK +AR I EL + R + +F Sbjct: 138 AGLIGQSPAMRKLYHQIERLGTAG-GSVLITGESGTGKELVARAIHELSERRDK---SFQ 193 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VNCA + + S FGH +GAFTGA+ R GL + +GG L LDEIGE+ QA LL Sbjct: 194 AVNCAGIPSELMESEFFGHTQGAFTGAQGKRLGLFKQVDGGTLLLDEIGEMPLALQAKLL 253 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E T GSD + D ++IA T ++L Q V +G+FREDL+ R+ ++ +P LR+ Sbjct: 254 RVLQEGTLRAVGSDEEEKVDVRIIAATHQNLEQRVRDGEFREDLFYRLETFSVKVPALRE 313 Query: 364 RQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 R ED+E + + +A G + +T+A + + GN REL ++ R Sbjct: 314 RGEDVERLAHHFISVYAERAGKRITDIDTDALDILYRY------RFPGNVRELQNAIERA 367 Query: 423 ATFATSGRITLDVVEDEINRLRYNWQESRP 452 TFA S + +D + + + +R + +P Sbjct: 368 VTFAQSHHLQVDDLPERMLEVRDPIADKQP 397 >UniRef50_P09434 Nif-specific regulatory protein n=7 Tax=Rhodobacter RepID=NIFA_RHOCA Length = 579 Score = 154 bits (389), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 97/261 (37%), Positives = 135/261 (51%), Gaps = 11/261 (4%) Query: 173 EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 E+R GI +P ++ QI++VA +R P+LL G +G GK AR + + Sbjct: 213 EQRGPAAPVSLDGIVGSSPAIAEVVAQIKRVA-STRMPVLLRGESGTGKELFARAV-HAQ 270 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIG 292 R + G F+ VNCA L S LFGH KGAFTGA ++G A+GG LFLDEIG Sbjct: 271 SPRAK--GPFIRVNCAALSETLLESELFGHEKGAFTGATALKKGRFELADGGTLFLDEIG 328 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 E+ Q+ LL+ ++E F G + + D +++A T RDL VA G+FR DLY RI Sbjct: 329 EISPAFQSKLLRVLQEGEFERVGGAKTIKVDTRIVAATNRDLEDAVARGQFRADLYFRIC 388 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNF 412 + LP LR R+ DI+P ++R +V+F + AF + + GN Sbjct: 389 VVPIVLPPLRNRKSDIKPLAQLFLDRFNKQNATNVKFAAD------AFDQICRCQFPGNV 442 Query: 413 RELSASVTRMATFATSGRITL 433 REL V R A + G I L Sbjct: 443 RELENCVNRAAAL-SDGAIVL 462 >UniRef50_B4ULA9 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Anaeromyxobacter RepID=B4ULA9_ANASK Length = 459 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 143/266 (53%), Gaps = 19/266 (7%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS- 239 F GI ++ ++ +E++A S PIL+ G +G GK LAR A H S Sbjct: 141 FSVHGIVGKSQAMKDLVSMLERIA-PSDVPILIEGESGTGKDLLAR-------AAHALSS 192 Query: 240 ---GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 G +V +N + + + A S LFGH KGAFTGA + R G A GG LFLDE+G L Sbjct: 193 RAQGPYVALNMSAIPENLAESELFGHEKGAFTGADQPRAGFFAEAEGGTLFLDELGLLPP 252 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 Q LL+ +++ F P GS + ++ +++A T DL++ V EGKFREDL+ R+ + Sbjct: 253 ALQPKLLRVLQDGEFIPVGSRKPRKANVRVVAATNEDLQRRVKEGKFREDLWFRLRVVPL 312 Query: 357 TLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 LP LR+R+EDI +++ V++HA L+ ++ + EA RA L W GN REL Sbjct: 313 RLPPLRERREDIPLLVEHLVQKHALRLSRPPLQPDAEAMRALL------DHPWPGNIREL 366 Query: 416 SASVTRMATFATSGRITLDVVEDEIN 441 ++ R A ITL + E+ Sbjct: 367 EHAIERGLLLARGDAITLADLPPELT 392 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 134/248 (54%), Gaps = 13/248 (5%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 + I N + I K+AI S P+L+ G +G GK AR I + R G FV Sbjct: 258 AAICGHNTVLRQEIATARKIAISS-VPVLIRGESGTGKEVFARAIHTASRRR----GPFV 312 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAML 302 VNC + S FG+ GAFTGA ++ + GL A+GG LFLDEIGEL + Q L Sbjct: 313 VVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLFELAHGGTLFLDEIGELPKEMQVKL 372 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ +++K+FY G DR V D ++IA T R+L ++ + +FR DLY R+N+ + LP LR Sbjct: 373 LRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMIEQQEFRHDLYYRLNVVSLYLPPLR 432 Query: 363 QRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 QR++DI + +++ ASL G + V+ E +L + W GN REL + R Sbjct: 433 QRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAVFLEY------DWPGNVRELYNVLER 486 Query: 422 MATFATSG 429 + A G Sbjct: 487 LVILADGG 494 >UniRef50_B1ZWK8 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZWK8_OPITP Length = 445 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 97/234 (41%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 197 IEQIEKVAIK---SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 +EQ+ +A + + A +LL G G GKS LAR + E + +G F+ VNC L+ Sbjct: 139 MEQVLAMAWRVAPTSASVLLLGENGTGKSMLARAVHEHST---RANGPFINVNCPCLQPQ 195 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGHV+GAFTGA G + +A GG LFLDE+GEL + QA LL+ ++E+ + Sbjct: 196 LLESELFGHVRGAFTGAVSDAVGKVAAAEGGTLFLDEVGELPPEIQAKLLRLLQERCYER 255 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + +D ++IA T RDLRQ VA G FREDLY R+N+ T +P LR R EDI P + Sbjct: 256 LGEAQTRRADIRVIAATNRDLRQRVAAGAFREDLYYRLNVITIEMPSLRGRPEDIVPLAE 315 Query: 374 YEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 + +E + S G R AR A +A +W GN REL V R A Sbjct: 316 HFLETLSQSAGGPRRRLTLAAREALVAH------SWPGNLRELRNLVERAAILC 363 >UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4 Tax=Deltaproteobacteria RepID=C0Q9L2_DESAH Length = 503 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/440 (28%), Positives = 202/440 (45%), Gaps = 44/440 (10%) Query: 78 ELHNPWDFEEVYACLHDFARGYEFQPEKE-DYLIHITTGTHVAQICWFLLAEARYLPARL 136 +L P F E+Y + + K+ D HI+ GT W +L++ + A L Sbjct: 74 KLSGPTVFSEIYESVVKVVTDILDRHGKDTDLTFHISPGTSQMAAVWIILSKTLFPNAEL 133 Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFN-- 194 I+SS + P E++ + + R A+ R L+ L G+ +P F+ Sbjct: 134 IESSIEQGVNTVSFPFELS------AEFIPNLLRPADRR---LELLSRGLPPESPEFSQI 184 Query: 195 --------RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 R+I + + VA++S P+L+ G +G GK AR I A + F+ VN Sbjct: 185 IHKSPIMQRVIAKAQHVAVRS-VPVLIEGESGTGKELFARAI---HNASPRKDKPFITVN 240 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 C + D S LFGHVKGAFTGA ++++G A+ G LFLDEIGEL Q LL+ + Sbjct: 241 CGAIPADLVESQLFGHVKGAFTGAEKAQKGYFEEADKGSLFLDEIGELPLLSQVKLLRTL 300 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +E G+ V D ++IA T R L + EG+FR DL+ R+ + +P LR+R Sbjct: 301 QEGEVVRVGTATPVKIDVRIIAATNRSLIDEIHEGRFRSDLFYRLAVAILKIPPLRERSG 360 Query: 367 DIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQA-------TWRGNFRELSASV 419 D+ +D+ V + V +++ + SP A +W GN REL ++ Sbjct: 361 DLSFLVDHFVAQ--------VNTDSKNEPGYKDKKISPDAKNLMFQHSWPGNVRELLNTI 412 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPS-ALTALLGAEAENIDLFDRMQLEHVI 478 R A ++ I + +ED + L S PS L +G + + D+ + + ++ Sbjct: 413 QRAAIWSFDSTINREDIEDALIPL----GTSNPSDILNRPVGGDFKIEDMMEVVAKHYIE 468 Query: 479 AICRQAKSLSAAGRQLFDVS 498 ++A +L +S Sbjct: 469 KALKEANGKKGKAAELVGLS 488 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/247 (36%), Positives = 134/247 (54%), Gaps = 11/247 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + ++ R+ E I+ VA K+ +L+ G +G GK R I L Q R S FV V Sbjct: 145 LVGKSARMQRVYEAIQMVA-KTDLTVLITGESGTGKDLACRAIHALSQRR---SNPFVAV 200 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + + S LFG+ KGAFT A ++R GL + A+ G +FLDEIG++ + QA LL+ Sbjct: 201 NCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAHKGTIFLDEIGDISPNIQAKLLRV 260 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++EK P G + VS D +++A T RDL + G+FREDL+ R+N+ +P LR+R Sbjct: 261 LQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFREDLFYRLNVLPIVMPSLRERP 320 Query: 366 EDIEPNLDYEVERH-ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 EDI +++ +E+H A+L E +L +A W GN REL + R Sbjct: 321 EDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFL------RAPWPGNVRELENVIVRGLL 374 Query: 425 FATSGRI 431 FA I Sbjct: 375 FAPRDEI 381 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 154 bits (388), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 89/265 (33%), Positives = 149/265 (56%), Gaps = 13/265 (4%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 F +GI + +I I K+A +L+ G +G GK +A I + K +R + Sbjct: 167 FNNTGIIGDSEEIRDVIYLINKIA-PLDVTVLITGESGVGKEVIANEIFQ-KSSRK--NK 222 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 F++VNCA + + S LFG+ KGAFTGA ++++GL + A+GG +FLDEIG++ + Q Sbjct: 223 QFIKVNCAAIPTNLLESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQP 282 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+A+++K P G + D ++IA T +DL Q V EGKFR+DLY R+N++ +P Sbjct: 283 KLLRALQQKEVVPVGGTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPP 342 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 LR+R+ DI +Y ++++ G SV ++EA + + W GN REL + Sbjct: 343 LRERKRDIYALGEYFLKQYNKKYGKSVVLSSEAYSLLMNY------DWPGNVRELQNIIE 396 Query: 421 RMATFATSGRITLDVVEDEINRLRY 445 R+ + + + +D+I ++ + Sbjct: 397 RLIIISDDQTV---INKDQIEKIMF 418 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 150/289 (51%), Gaps = 25/289 (8%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ----------IEKVAIK 206 I+ L + N + +E+ +L+ I TR H + M+ Q IE+VA Sbjct: 204 IEEQLQQINTYKQQLEDEK----SYLQEQINTRY-HHSEMVGQSSAIRQVFDLIEQVA-A 257 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S + +L+ G TG GK +AR I L + + ++VNCA L + S LFGH KG+ Sbjct: 258 SDSTVLILGETGTGKELVARSIHNLSPRKDKL---MIKVNCAALPANLVESELFGHEKGS 314 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E R G A+ G LFLDEIGEL D Q LL+A++EK G + ++ ++ Sbjct: 315 FTGASERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVRI 374 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L + V EG FR DLY R+N++ T+P LR R+EDI+ + ++ A TG Sbjct: 375 IAATNRNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQ 434 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 V+ T+ T + W GN REL + R + + G I +V Sbjct: 435 VKGMTKG-----VLKTLQEYPWPGNIRELEHLIER-SILLSRGNIINEV 477 >UniRef50_Q5P474 Phenol-degradation regulator n=11 Tax=Betaproteobacteria RepID=Q5P474_AZOSE Length = 578 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/275 (37%), Positives = 144/275 (52%), Gaps = 17/275 (6%) Query: 156 IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 +IDL ++ + S E+ Q D + + +P F +E + + A S +LL G Sbjct: 210 LIDLQ-TQVVQLRSTIGEKNQIPGDMIGT-----SPGFRAALELLSQAA-ASPISVLLLG 262 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 TG GK AR + E+ R + V +NCA + D S LFG KGA+TGA SR Sbjct: 263 ETGVGKELFARALHEMSTRRDR---PLVAINCAAIPHDLVESELFGVEKGAYTGALVSRP 319 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 G A+GG LFLDEIGEL Q+ LL+ ++E G DR + +L+A T L Sbjct: 320 GRFERADGGTLFLDEIGELPLTAQSKLLRVLQEGEVERLGDDRIRKINVRLVAATNAGLP 379 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEAR 394 QLV EG+FR DLY R+N + +P LR+R+EDI + +E+HA++ G + F +A+ Sbjct: 380 QLVKEGRFRADLYYRLNAYPINIPPLRERREDISVLAKHFLEKHAAINGKKLLGFTDKAK 439 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 RA +A W GN REL +V R A G Sbjct: 440 RALTTYA------WPGNIRELQNTVERGVILAPHG 468 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/225 (40%), Positives = 123/225 (54%), Gaps = 18/225 (8%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFVEVNCATLRGDTAMSTLFGH 262 SRA +LL G +G GK LAR I HQ S + VNC L S LFGH Sbjct: 165 SRATVLLQGESGTGKELLARLI-------HQLSPRSTRPIITVNCGALPESLIESELFGH 217 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA R G A+GG LFLDEIGEL Q LL+ ++E+ F G + + + Sbjct: 218 EKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFLQEREFQRVGGNTNIRA 277 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++I+ T RDL +V E KFREDLY R+N+ ++P LR+R+EDI +D+ +ER A+ Sbjct: 278 DVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERREDIPALIDHFLERFAAE 337 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 G + ++EAR + + + GN REL + R A Sbjct: 338 NGKKISGISSEARDLLMKY------DYPGNVRELENIIERAVVIA 376 >UniRef50_P30667 Nif-specific regulatory protein n=6 Tax=Bacteria RepID=NIFA_AZOBR Length = 625 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 91/256 (35%), Positives = 138/256 (53%), Gaps = 10/256 (3%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + +P+ ++ Q+ +VA ++ +L+ G +G GK +AR I + + F+ V Sbjct: 205 VVCTSPNMLEVMAQVHRVA-PFKSTVLIRGESGTGKELIARAIHNMSPRK---DAPFIRV 260 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGH KGAFTGA++ +G A+GG LFLDEIG++ + QA LL+ Sbjct: 261 NCAALPESLLESELFGHEKGAFTGAQKDHKGRFELASGGTLFLDEIGDISPNFQAKLLRV 320 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+ F G + + +D +LI T +L + V GKFR DLY RIN+ T LP LR+R+ Sbjct: 321 LQEQEFERVGGSKTIKTDVRLICATNLNLEEAVGHGKFRADLYFRINVVTIHLPPLRERR 380 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 +DI P + V + A G ++ E A + TW GN REL + R AT Sbjct: 381 QDIGPLARHFVAKFAKDNGMALVMEDE------ALEVLNRCTWPGNVRELENCIERAATQ 434 Query: 426 ATSGRITLDVVEDEIN 441 + G I + + +N Sbjct: 435 SRDGIIRTESLSCSLN 450 >UniRef50_C1F0X6 Sigma-54 dependent transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=C1F0X6_ACIC5 Length = 781 Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 11/260 (4%) Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 R+ EE +T ++ I R+++Q+E VA + A L+ G TG GK +AR I Sbjct: 458 RYLEEELRT-EYSFEEIVGNGESLRRVLKQVETVA-PTDATTLILGETGTGKELIARAIH 515 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 L AR + FV+VNC+++ S LFGH KGAFTGA + R G L A+ G LFLD Sbjct: 516 NLS-ARDGHT--FVKVNCSSIPTGLLESELFGHEKGAFTGAIQQRIGRLELAHQGTLFLD 572 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIG+L D Q LL+A++EK G R + DF+L+A T RDL ++V +G+FR DLY Sbjct: 573 EIGDLPLDLQPKLLRALQEKEIERLGGRRTIPVDFRLLAATHRDLARMVKDGQFRSDLYY 632 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWR 409 R+ ++ LP LRQR+EDI ++Y V +HA + E + L + W Sbjct: 633 RLKVFPILLPPLRQRREDIPELVNYFVAKHARRMNKHIEEIPEPVMSALV-----RWHWP 687 Query: 410 GNFRELSASVTRMATFATSG 429 GN REL + R A T G Sbjct: 688 GNIRELENFLER-AVILTRG 706 >UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WXM6_METML Length = 642 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/321 (35%), Positives = 165/321 (51%), Gaps = 30/321 (9%) Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 LD L SG A +R ++QI++V + PIL+ G TG GK AR I E A Q Sbjct: 331 NLDLLDSGDA----KISRAVQQIKQV-LSRDIPILIQGETGVGKELFARAIHE---ASAQ 382 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGA 296 G +V VNCA L + LFG+ +GAFTGAR + G + ANGG LFLDEIG++ Sbjct: 383 HKGPWVAVNCAALPEGLIEAELFGYEEGAFTGARRKGSPGKIEQANGGTLFLDEIGDMPL 442 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 QA LL+ ++E+T P GS + + +F LI+ T L++ V G+FR DLY R+N + Sbjct: 443 SLQARLLRVLQERTVTPLGSTKTIPVNFSLISATNLKLKEKVESGEFRSDLYYRLNGLSV 502 Query: 357 TLPGLRQRQEDIEPNLDY--EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRE 414 LP LR+R D++ +D +E+ ++ E R + A TW GN R+ Sbjct: 503 ALPPLRER-SDLQALIDVILNIEQ-----AGAIEITPEVRAIFQAH------TWPGNIRQ 550 Query: 415 LSASVTRMATFATSGRI-TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 L + A I TL + +D I+ + S+PS + + A A +DL D Sbjct: 551 LHNVLRTALALADGAAISTLHLTQDFIDEMSL----SKPSLIANV--ATANPVDLDDLTN 604 Query: 474 LEHVIAICRQAKSLSAAGRQL 494 A+ +A ++SA RQL Sbjct: 605 QAIRRAMQTEAGNVSAVARQL 625 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 115/354 (32%), Positives = 171/354 (48%), Gaps = 46/354 (12%) Query: 183 KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAF 242 +S I +P + + I +VA S A +L+ G +G GK +AR I E + + F Sbjct: 138 ESKIVGSSPSMLEVYKLIARVA-PSNANVLITGASGTGKELVARAIHEHSR---RAEMPF 193 Query: 243 VEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAML 302 VNC + S LFGH KGAFTGA R+GL+ S GG LFLDEI E Q L Sbjct: 194 TPVNCGSFAETLLESELFGHEKGAFTGADSVRKGLIESTQGGTLFLDEITETSLGFQVKL 253 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ ++E+ GS++ + D +++A T RD+ L+ EGKFREDLY R+ + +P L Sbjct: 254 LRVLQEQQLRRIGSNKIIPIDVRILAATNRDVPSLIREGKFREDLYYRLAVVQIKIPMLA 313 Query: 363 QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP-----QATWRGNFRELSA 417 +RQ DI SL +R E +A ++ S + +W GN REL Sbjct: 314 ERQSDI-----------PSLVTHFLRQFNERNQARVSIEQSAVELLQKRSWPGNVRELEN 362 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDR---MQL 474 ++ R+A FA++GRIT VE E QES+ + G +AE + DR M+ Sbjct: 363 TIYRLAIFASTGRITGADVERE--------QESQKN------GPKAEPVSAPDRLVEMER 408 Query: 475 EHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 ++ I + + + + R+ L K R G+T +A + Q Sbjct: 409 HQILRILKDVHGNKSEAARRLGIERKT---------LYKKAVRLGITLDASEYQ 453 >UniRef50_Q2BPF2 Helix-turn-helix, Fis-type protein n=1 Tax=Neptuniibacter caesariensis RepID=Q2BPF2_9GAMM Length = 441 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/266 (36%), Positives = 143/266 (53%), Gaps = 20/266 (7%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 R+ + + + + R+P FN++++ I +V K+ +LL GP+G GK A QA Sbjct: 121 REVSAEPIADKMIGRSPAFNQLVDLIHRVG-KTDTSVLLTGPSGCGKELAA-------QA 172 Query: 235 RHQFS----GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 H S FV V C+ L S LFGHVKGAFTGA +R+GL+ SA GG LFLDE Sbjct: 173 LHAVSPRTRKPFVTVECSGLTDSLFESELFGHVKGAFTGATSNRKGLVESARGGTLFLDE 232 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 +G++ Q LL+ IE +T+ P G +DF+LI T ++L +V +FREDLY R Sbjct: 233 VGDIPLHLQVKLLRLIETRTYRPVGESEPYEADFRLICATHKNLPAMVEANEFREDLYHR 292 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRG 410 I+ + +LP L +R ED+ P L VE D++ ++ A L A P ++G Sbjct: 293 ISTFPISLPSLAERIEDL-PLL---VESILLRIDDTLPLRV-SKEAMLLLAQQP---FKG 344 Query: 411 NFRELSASVTRMATFATSGRITLDVV 436 N REL + R + I+ +V+ Sbjct: 345 NIRELKNVLERAVVLRDNTEISEEVM 370 >UniRef50_A1K9Z2 Probable transcriptional regulatory protein n=2 Tax=Rhodocyclaceae RepID=A1K9Z2_AZOSB Length = 442 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 131/232 (56%), Gaps = 11/232 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ R+P ++ QIEKV I AP+L+ G +G GK +A I Q + G F+ Sbjct: 139 GMTGRSPRMLQLFRQIEKV-ITVDAPVLIGGASGTGKELVAHAI---HQHSARAKGPFIA 194 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NC + + S LFG+ +GAFTGA + + G + +AN G+LFLDEIG+L D QA LL+ Sbjct: 195 MNCGAIPANLIHSELFGYERGAFTGAVQRKFGNIEAANNGVLFLDEIGDLPLDLQASLLR 254 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++EKT G ++ + ++IA T DL++ VAEG+FREDLY R+N+ +P LR+R Sbjct: 255 FLQEKTIVRVGGTERLRMNVRVIAATHVDLKRAVAEGRFREDLYYRLNVLHLPVPALRER 314 Query: 365 QEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 +EDI H VR F+ EA A A+ W GN REL Sbjct: 315 REDISLLAQAVYAAHEDQRSPQVRGFSAEATLAMEAY------DWPGNVREL 360 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 130/231 (56%), Gaps = 9/231 (3%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI +P + +I++++ VA SRA IL+ G +G GK +A+ I Q+ + G F+ Sbjct: 141 GIIGNSPKLHEVIDRVKLVA-PSRATILIEGESGTGKELIAQAI---HQSSSRSRGPFLA 196 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 V+CA L + S LFGH +G+FTGA E R G SA+GG LFLDEIGE+ A Q LL+ Sbjct: 197 VHCAALSENLLESELFGHERGSFTGATERRIGRFESADGGTLFLDEIGEISASTQVKLLR 256 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 +E K+ G + + D +L+A T R L QLV +GKFREDL+ R+N+ T+P LR+R Sbjct: 257 FLETKSIERVGGSKPIDLDVRLVAATNRTLEQLVRDGKFREDLFFRLNVVRITMPPLRER 316 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 ED+ L + + + G E A AT W GN REL Sbjct: 317 AEDVPLLLGHYITAFSEENGVP-PLTIEPG----ALATLQAYPWPGNIREL 362 >UniRef50_C3WC69 Sigma-54 dependent transcriptional regulator n=5 Tax=Bacteria RepID=C3WC69_FUSMR Length = 591 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 13/266 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I +++ +++ E+I K+A K+++ +L+ G +G GK +AR I Q F+ + Sbjct: 272 IISKSEKMSKLKEKIRKIA-KTQSTVLITGESGTGKELIARAIHNCSDRAKQ---PFIAI 327 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 NC + + S LFG+VKGAF+GA E R G AN G++FLDEIGE+ Q LL+ Sbjct: 328 NCGAIPENLLESELFGYVKGAFSGASNEGRVGKFELANNGVIFLDEIGEMPFFLQVKLLR 387 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E+T GS++ ++ + ++IA T ++L +LV EGKFREDLY R+N+ +P LR+R Sbjct: 388 VLQERTIVRIGSNKLINLNIRVIAATNKNLLKLVKEGKFREDLYYRLNVIPLKVPALRER 447 Query: 365 QEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 QEDI DY +++ SL + + + +L + +W GN REL SV + Sbjct: 448 QEDILLLRDYLNTKYSKSLGSSKIVMDDDINEIFL------KHSWPGNVRELENSVEFLL 501 Query: 424 TFAT-SGRITLDVVEDEINRLRYNWQ 448 + +G I + ED L+ N + Sbjct: 502 NMSDENGNIDEETREDLKRNLKSNSK 527 >UniRef50_B3E8T0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E8T0_GEOLS Length = 445 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 12/233 (5%) Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 ++Q+ ++A+ + P+L+ G TG GK LA+ I + + R Q+ FVE+NC++LRG+ Sbjct: 150 VQQVARMAVDNAHPVLITGETGTGKGMLAKWIHQ-QGCRAQYE--FVELNCSSLRGEMLS 206 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 LFG +GA+T A + R GL+ A+ G LFLDEIG++ ++ QA LK +E+KT+ G Sbjct: 207 RELFGAQRGAYTSADQDRRGLVDVADRGSLFLDEIGDMSSEVQAQFLKLLEDKTYRRLGD 266 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + + SDF+LI T RDL A+G+FR+DL+ RINL LP LR+R+ED+ Y + Sbjct: 267 VKLLKSDFRLICATHRDLHAFCADGQFRQDLFYRINLIHIHLPPLRERREDLPAITSYLL 326 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 +L G + + T+ R L F+ W GN RE+ + R G Sbjct: 327 ----NLLGATDQVLTDEVRGLL-FSYD----WPGNIREMRNVLERALLLTPPG 370 >UniRef50_Q1LCB8 Sigma-54 factor, interaction region n=73 Tax=Proteobacteria RepID=Q1LCB8_RALME Length = 841 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/288 (36%), Positives = 149/288 (51%), Gaps = 15/288 (5%) Query: 148 PRGPGEVTI----IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 PRGP V + I D + A R R + G+ R+ FN +E +++V Sbjct: 492 PRGPEHVNVELRPILDDNHQVVAYVERLNTVRSASARPSAEGLVGRSEAFNHALEAVQRV 551 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A S P+LL G +G GK AR + E A + SG FV V+C+ L S LFG+ Sbjct: 552 A-PSSLPVLLLGESGTGKEMFARAVHE---ASDRASGPFVVVDCSGLTETLFESELFGYE 607 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA+ + GL+ +A GG LFLDE+G++ Q LL+ IE T+ G + S+ Sbjct: 608 KGAFTGAQARKPGLVETAEGGTLFLDEMGDVPLAMQVKLLRLIESGTYRRVGGVETLQSN 667 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 F+L+A T + L Q+VA+G FR+DLY RI + LP LR R +DI + + R + T Sbjct: 668 FRLVAATHKPLDQMVAQGLFRQDLYFRIAAFPIHLPSLRDRLDDIALLAESILAR-GNRT 726 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 D +R ++E A A W GN REL + R +A G I Sbjct: 727 KDPLRLSSE------ALARMRAHHWPGNIRELRNVLERARLYADDGVI 768 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/262 (39%), Positives = 142/262 (54%), Gaps = 15/262 (5%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 I + ++ + +VA S A +LL G +G GK +AR I R + GAFV Sbjct: 158 NIIAHSSEMRELLSLVSRVA-TSTASVLLTGESGTGKELVARAI-HYNSPRAE--GAFVA 213 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VN A + S LFGH KGAFT AR+S+ GL A+GG +FLDEI E+ A QA LL+ Sbjct: 214 VNLAAVPEALVESELFGHTKGAFTDARQSKAGLFNEADGGTIFLDEIAEMAAPLQAKLLR 273 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 A++E+ P G+ R D +++A T RDL++ +AEG FREDLY R+N+ LP LR+R Sbjct: 274 ALQEQEIRPVGATRPQRVDVRVVAATNRDLQERMAEGDFREDLYYRLNVIQIELPPLRRR 333 Query: 365 QEDIEPNLDYEVE-RHASLTGD-SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 +DI P ++ + A LT SVR E +R ++ W GN REL+ + R Sbjct: 334 PDDILPLAEHFLALASARLTPPRSVRLAAETQRILHSY------PWPGNVRELANVIERG 387 Query: 423 ATFATSGRITLDVVEDEINRLR 444 T R L ED N +R Sbjct: 388 LTLC---RGDLIAPEDLPNHVR 406 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/247 (38%), Positives = 137/247 (55%), Gaps = 12/247 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I T +P + + K+A+ S+A +L++G +G GK +AR I + G F++V Sbjct: 145 ILTNSPAMMDICKDTAKIAL-SQASVLISGESGTGKELIARAI---HYNSRRAKGPFIKV 200 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGH KGAFTGA+ R+GL AN G L LDEIGE+ QA LL+ Sbjct: 201 NCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRI 260 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+ F G + + D ++IA T RDL+ +V EG FREDL+ R+N+ LP LR R+ Sbjct: 261 LQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320 Query: 366 EDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 EDI ++ +++ +S D + + A A+ +W GN RELS + R A Sbjct: 321 EDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW------SWPGNIRELSNVIER-AV 373 Query: 425 FATSGRI 431 SG I Sbjct: 374 VMNSGPI 380 >UniRef50_Q30WQ5 Two component transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30WQ5_DESDG Length = 535 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 135/255 (52%), Gaps = 25/255 (9%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 R+ T + I + + ++ + + A S A +LL G TGAGK AR I Sbjct: 126 RRSTASLKRDDIIGSSRALQKCLDTVSEAAF-SDASVLLFGETGAGKEVFARAI---HDN 181 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 H+ G FV V+CA+L A S LFGH KGAFTGA ++++GL+ A+ G LFLDE+GEL Sbjct: 182 SHRAGGPFVAVDCASLTRTLAGSILFGHRKGAFTGAEQNKDGLVLQAHRGTLFLDEVGEL 241 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q + L+ ++E F P G +V+SDF+LIA T RDL ++V++G FR DL R+ Sbjct: 242 PLSMQKLFLRVLQEHRFRPVGGRNEVTSDFRLIAATNRDLEKMVSQGTFRSDLLYRMRTI 301 Query: 355 TFTLPGLRQRQEDIEPNLDYEVER--------HASLTGDSVRFNTEARRAWLAFATSPQA 406 LP LR R EDI D+ ++R H S+ D E RA+ Sbjct: 302 VMHLPPLRSRTEDITELADHYLQRMCGKYGVPHKSMAPDL----QETLRAY--------- 348 Query: 407 TWRGNFRELSASVTR 421 W GN REL ++ R Sbjct: 349 AWPGNVRELIHTLER 363 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 134/249 (53%), Gaps = 11/249 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ +P ++ +I VA S A +L++G +G GK +AR L + V Sbjct: 140 GMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVAR---ALHACSARSDKPLVT 195 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NCA L S LFGH KGAFTGA + REG A+GG LFLDEIG++ Q LL+ Sbjct: 196 LNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLR 255 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 AI+E+ GS++ +S D LIA T RDL + V+ G+FR+DLY R+N+ +P LRQR Sbjct: 256 AIQEREVQRVGSNQTISVDVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQR 315 Query: 365 QEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +EDI D+ + R A +V+ F +A + + W GN REL ++ R Sbjct: 316 REDIPLLADHFLRRFAERNRKAVKGFTPQAMDLLIHY------DWPGNIRELENAIERAV 369 Query: 424 TFATSGRIT 432 T I+ Sbjct: 370 VLLTGEYIS 378 >UniRef50_C1AEP0 Fis family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEP0_GEMAT Length = 474 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 154/314 (49%), Gaps = 16/314 (5%) Query: 121 ICWFLLAEARY--LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQT 178 I WF AR+ LPA + P + P GE+ + L + A+ + A Sbjct: 73 IAWFDALPARHDRLPA--LPHGPIGRLTLPLKAGELQRL-LKAAEEPALPQQTAVSPGSH 129 Query: 179 LDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQF 238 L+F G+ P +++ +I +VA + A +L+ G +G GK +AR + R Q Sbjct: 130 LEF--HGMFASTPGMHQVFHRIRRVA-ATDASVLITGESGTGKELVARALHNDSPRRDQ- 185 Query: 239 SGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 FV +NC+ L + S LFGH +GAFTGA R GL +A+GG LFLDEIG+LG Sbjct: 186 --PFVALNCSALPSELVESELFGHTRGAFTGALRDRAGLFEAAHGGTLFLDEIGDLGLSA 243 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 QA +L+A+E G + S D ++IA T R+L QLVA G FREDL R+++ L Sbjct: 244 QAKMLRALESHEVMRVGGSKITSVDVRVIAATHRNLPQLVAWGDFREDLLYRLHVVGIEL 303 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 P LR R DI + V A G VR A +A LA TW GN REL Sbjct: 304 PALRDRPADIPLLAERFVRLFAERHGLPVRLPDAATQALLA-----AHTWSGNIRELRNC 358 Query: 419 VTRMATFATSGRIT 432 + + IT Sbjct: 359 IEGAVILSDGPAIT 372 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 152/300 (50%), Gaps = 34/300 (11%) Query: 182 LKSG--IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 L SG I +P ++ ++ VA + A +L+NG TG GK ++R I E A ++ Sbjct: 295 LTSGYDIVAEDPKMQNVLSLVKHVA-PTDATVLINGETGTGKELVSRAIHE---ASNRSD 350 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 + +NC + + S LFGH KGAFTGA R+G A+ G +FLDEIGE+ + Q Sbjct: 351 KPLIRINCGAIPTNLIESELFGHKKGAFTGATSDRKGRFLLADKGTIFLDEIGEMPIELQ 410 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 LL+ I+E F P GS + + ++IA T RDL Q A+GKFREDLY R+N++ +P Sbjct: 411 PKLLRVIQEGEFDPVGSSETIKVNVRIIAATHRDLLQHAADGKFREDLYYRLNVFPIEVP 470 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQA-----TWRGNFR 413 LR R ED+ + G+ + F+ + + + + ++ W GN R Sbjct: 471 ALRHRAEDV-----------CLIAGEMINHFSKKLNKPMVELSDIDKSHLMDYHWPGNVR 519 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT-------ALLGAEAENI 466 EL + R + SG I ++D I +++ + +E P L LL E ENI Sbjct: 520 ELQNLIERAIIISKSGTIN---IKDVIPKMQSD-EEHPPKTLKDKVYTSQELLKLEKENI 575 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 100/276 (36%), Positives = 153/276 (55%), Gaps = 16/276 (5%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNR-----MIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 EE Q L+ G+ T N R + E I K++ S A IL+ G +G GK +A Sbjct: 125 LTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKIS-NSDASILILGESGTGKEVIA 183 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 R I K +R +G F+ V+CA+L + S LFG+ +GAFTGA +++GLL A+GG Sbjct: 184 RAIH--KNSRRS-TGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLLEMAHGGT 240 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDE+GEL QA LL+ +EE+ G +R ++ D +++A T RDL + + +FRE Sbjct: 241 LFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAIRAKEFRE 300 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSP 404 DLY RIN+ T LP L +RQ+DI +++ ++ + V F EA +A ++A Sbjct: 301 DLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAMKSYA--- 357 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 W GN REL V R + + S + + + +++ Sbjct: 358 ---WPGNIRELRNVVERAISLSGSEMVEISDLPEKV 390 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/270 (36%), Positives = 147/270 (54%), Gaps = 22/270 (8%) Query: 170 RFAEERQQ----TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 R+ EE+Q ++F+ A R +++ ++K+A + + +L+ G TG GK ++ Sbjct: 718 RYLEEQQSEFQPPVEFVGECAAVR-----KVLNDVKKIA-ATDSTVLILGETGVGKELIS 771 Query: 226 RRILELKQARHQFSGA-FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 I E R +G F+ VNC+ S LFGH KGAFTGA + R G A+GG Sbjct: 772 TAIHE----RSSRAGKPFIRVNCSMFPEGLIASELFGHEKGAFTGADKRRLGRFELADGG 827 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 LFLDEIG++ + Q LL+ ++ K F G + SDF+L+A T RDLR+ V GKFR Sbjct: 828 TLFLDEIGDISHEVQVRLLRVLQNKEFERVGGRSTLRSDFRLLAATNRDLREDVKTGKFR 887 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT-EARRAWLAFATS 403 EDLY R+N+ + +P LR+R+EDI +DY ++RHA G T E +A+ Sbjct: 888 EDLYYRLNVLSLKIPPLRERKEDIPLLVDYFLDRHAKNLGKPRGAVTPEDLDKLVAY--- 944 Query: 404 PQATWRGNFRELSASVTRMATFATSGRITL 433 W GN REL + R A ++ R+ + Sbjct: 945 ---DWPGNVRELENVIERSAILSSGARLEI 971 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/280 (36%), Positives = 142/280 (50%), Gaps = 18/280 (6%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 S + R+ + EQI + A + A +L+ G G GK AR I +L + H+ V Sbjct: 138 SHMTGRSEAVESLREQIRRAA-PTNATVLITGENGTGKELAARMIHQLSKRSHR---PMV 193 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 EVNCA + D S LFGH KGAFTGA E R G ANGG LFLDEIG++ QA +L Sbjct: 194 EVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVANGGTLFLDEIGDMSLRTQAKIL 253 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ F G R + D +++A T +D+++ + G+FR+DLY R+N+ +P LR Sbjct: 254 RILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGRFRQDLYYRLNVIPIFVPPLRD 313 Query: 364 RQEDI----EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 R +DI E LD + +S E A F Q +W GN REL + Sbjct: 314 RLQDIPLLVEDFLD-------DMAAESAMGRKEIDPA--VFGPLQQYSWPGNIRELRNFI 364 Query: 420 TRMATFATSGRI-TLDVVEDEINRLRYNWQESRPSALTAL 458 RM RI D+ D +NRL +E+ P L Sbjct: 365 ERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATL 404 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 94/254 (37%), Positives = 141/254 (55%), Gaps = 15/254 (5%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA-FVEVNCA 248 +P +R+ + IE VA S A +L+ G TG GK +A I R + +G FV ++CA Sbjct: 148 SPQMHRIFKMIEDVA-PSTASVLIMGETGTGKELVAHAI----HYRSERAGKPFVALHCA 202 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 L S LFGH KGAFTGA +SR+G A+GG LFLDE+ E+ Q LL+ +E+ Sbjct: 203 ALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLEK 262 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 F G ++ + D + IA T R+L + V+EG+FREDL+ R+N+ +P LR+R++DI Sbjct: 263 GEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDDI 322 Query: 369 EPNLD--YEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 P L + V+ + F+ EA +A L+ W+GN REL ++ R Sbjct: 323 -PILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHH------WQGNIRELQNTIERAIVLC 375 Query: 427 TSGRITLDVVEDEI 440 S I++D + + I Sbjct: 376 KSDTISVDHLPESI 389 >UniRef50_A5W971 Two-component response regulator CbrB n=10 Tax=Proteobacteria RepID=A5W971_PSEP1 Length = 480 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 135/246 (54%), Gaps = 11/246 (4%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M +I KVA + + +L+ G +G GK +AR + L + + + VNCA + Sbjct: 162 MYSKIRKVA-PTDSNVLIQGESGTGKELVARALHNLSR---RAKAPMISVNCAAIPETLI 217 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA R GL+ +A+GG LFLDEIGEL + QA LL+ ++E G Sbjct: 218 ESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVG 277 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S + D +LIA T RDL+ L G+FREDLY R+++ LP LR+R D+ Sbjct: 278 SVQSQKVDVRLIAATHRDLKNLAKAGQFREDLYYRLHVIALKLPALRERGSDVNEIASVF 337 Query: 376 VERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + R ++ G D + F+ EA +A + +W GN REL +V R + S I+ + Sbjct: 338 LARQSARIGRDDLHFSAEAEQAIRHY------SWPGNVRELENAVERAVILSESAEISAE 391 Query: 435 VVEDEI 440 ++ +I Sbjct: 392 LLGIDI 397 >UniRef50_B8FGF3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=B8FGF3_DESAA Length = 1047 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 138/255 (54%), Gaps = 19/255 (7%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GA 241 I TR+ +++EQ E +A +S A +L+ G TG GK L +RI H FS G Sbjct: 737 IITRSRAMFQILEQAE-MAARSEATLLVTGETGTGKELLVKRI-------HHFSNRSKGP 788 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 V V+ T+ + S LFGH KGAFTGA + GL+ A+ G LF+DEIGEL Q Sbjct: 789 MVTVDSTTIPENLVESELFGHEKGAFTGADSRKLGLIEMAHEGTLFIDEIGELPPQTQVK 848 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+A+E +TF+ G + V SDF+L+A T R L + V +G+FR+DLY R+N+ LP L Sbjct: 849 LLRALESRTFHRVGGAQAVKSDFRLVAATNRSLAKEVEQGRFRQDLYYRLNVIHLVLPPL 908 Query: 362 RQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R+R +D+ + ++ + S G + FN A+ +W GN REL + Sbjct: 909 RERGDDVIVLARHFLDHYCSKYGFKPLNFNRRDEDMLTAY------SWPGNVRELKNVIE 962 Query: 421 RMATFATSGRITLDV 435 R + R LD+ Sbjct: 963 RAVILSGGRRPALDI 977 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 97/257 (37%), Positives = 132/257 (51%), Gaps = 16/257 (6%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 AE R+ T + I R+ ++ I++VA + +L++G TG GK +AR I Sbjct: 181 LAEARRPT-----TNIIGRSKVIQEVLRAIDQVA-DTNTTVLISGETGTGKELVARAI-- 232 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 + G V+VNCA + S LFGH KGAFTGA R G A GG +FLDE Sbjct: 233 -HDNSRRAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDE 291 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 +GEL QA LL+ ++E+ F P GS R V D ++I + +DL + VA G FR DLY R Sbjct: 292 VGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYR 351 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWR 409 +N++ LP LR+R DI DY V ++A L D R T A + + W Sbjct: 352 LNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMCY------HWP 405 Query: 410 GNFRELSASVTRMATFA 426 GN REL + R A Sbjct: 406 GNVRELENCIERAVLLA 422 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 152 bits (384), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/274 (36%), Positives = 145/274 (52%), Gaps = 17/274 (6%) Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 ++P ++++ I +V+ + +L+ G +G GK +A I + + AFV+ NCA Sbjct: 215 KSPAMRQIMDIIRQVS-RWDTTVLVRGESGTGKELIANAI---HHNSPRAAAAFVKFNCA 270 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 L + S LFGH KGAFTGA R+G A+GG LFLDEIGE A QA LL+ ++E Sbjct: 271 ALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSASFQAKLLRILQE 330 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 G D + + ++IA T R L + V G FREDLY R+N+ LP LR+RQEDI Sbjct: 331 GEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPIALPPLRERQEDI 390 Query: 369 EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 + V + A G ++R + A R + + +W GN REL + R A + S Sbjct: 391 AELAHFLVRKIAHSQGRTLRISDGAIRLLMEY------SWPGNVRELENCLERSAVLSES 444 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 G I DV+ +N +++ P AL + AE Sbjct: 445 GLIDRDVI-------LFNHRDNPPKALASSGPAE 471 >UniRef50_A0LGU2 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGU2_SYNFM Length = 452 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/259 (38%), Positives = 136/259 (52%), Gaps = 14/259 (5%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 RQQ + + GI + + I K+A S + +L+ G TG GKS L+ I A Sbjct: 130 RQQDIIYDFDGIIAASASMKHAMSTIRKLA-HSDSVVLMTGETGTGKSILSGAI-HFNSA 187 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R + FV++NCA + S LFGH KGAFT A ++R G L ANGG +FLDEIGEL Sbjct: 188 RRR--KPFVKINCANIPEALLESELFGHEKGAFTSANKTRVGRLEQANGGSVFLDEIGEL 245 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 QA L+ +EEK F G ++ + SD ++IA T ++L + V G FREDLY R+N+ Sbjct: 246 SLALQAKFLRVLEEKAFERLGGNQTIHSDIRIIAATNKNLDEQVTNGAFREDLYYRVNVL 305 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL--AFATSPQATWRGNF 412 LP LR R+E IEP L Y L G R + +L A W GN Sbjct: 306 RVHLPPLRNRRECIEP-LSYH------LLGKICRTARKRIEGFLPEVIALFKDYHWPGNI 358 Query: 413 RELSASVTRMATFATSGRI 431 RELS ++ R + F R+ Sbjct: 359 RELSNTIER-SVFLEENRV 376 >UniRef50_B8GM58 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GM58_THISH Length = 509 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 130/242 (53%), Gaps = 12/242 (4%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 R++ I +VA S A +L+ G TG GK +AR I + + G ++VNCA + Sbjct: 196 LRRLLADIGRVA-PSEATVLITGETGTGKELIARAI---HRHSRRSQGPLIKVNCAAITA 251 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S FGH KGAFTGA + R+G + A+GG LFLDE+GE+ D QA LL+ ++E F Sbjct: 252 TLQESEFFGHEKGAFTGAAQRRDGRFKLADGGTLFLDEVGEMPLDLQAKLLRVLQEGEFE 311 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P GS R V D ++IA T RDL Q+V EG FREDL R+N++ P LR+R ED+ Sbjct: 312 PVGSGRTVRVDVRVIAATHRDLTQMVREGGFREDLLYRLNVFPLHAPPLRERGEDVVLLA 371 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR---MATFATSG 429 + R A G ++ + A RA L W GN REL + R T G Sbjct: 372 EAIATRLARQEGATLAPLSPADRARLK-----AHPWPGNVRELENVIERAWITGTDTPDG 426 Query: 430 RI 431 R+ Sbjct: 427 RV 428 >UniRef50_B1Y713 Transcriptional regulator, NifA, Fis Family n=4 Tax=Burkholderiales RepID=B1Y713_LEPCP Length = 593 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/232 (39%), Positives = 125/232 (53%), Gaps = 17/232 (7%) Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A +RA +LL G +G GK +AR + L + F++VNCA L S LFGH Sbjct: 228 AAPARATVLLRGESGTGKEAIARALHYLSPRK---DAPFIKVNCAALTESLLESELFGHE 284 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 +GAFTGA R+G A+ G LFLDE+G++ A QA LL+ ++E+ F G +R + D Sbjct: 285 RGAFTGAAGDRKGRFEQAHTGTLFLDEVGDISASFQAKLLRVLQEREFERVGGNRAIKVD 344 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +LI T RDL ++V G++R DLY RIN+ + LP LR+R++DI + + V+ Sbjct: 345 VRLICATNRDLEKMVKRGEYRADLYYRINVVSIFLPPLRERRDDIPALVSHFVD------ 398 Query: 384 GDSVRFNTEARR----AWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 RFN E RR A A W GN REL + R AT A I Sbjct: 399 ----RFNKENRRKLRIAGDAMEVLSHCYWPGNVRELENCIERTATMANGDLI 446 >UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW3_THEYD Length = 449 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 96/279 (34%), Positives = 146/279 (52%), Gaps = 14/279 (5%) Query: 158 DLDLSRYNAIASRFAEERQQTLDFLK-----SGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 ++ LS I EE ++ + K I + + E+I K+A + +L Sbjct: 109 EIKLSLKKLIKPSIVEEPKEKIPTFKEKEELCAIIGESVEIKLLFEKIRKIA-NTPTNVL 167 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 L G TG GK AR I E A ++ FV +NCA+L + S LFG +KGAFTGA Sbjct: 168 LLGETGTGKELFARAIHE---ASYRRKKPFVAINCASLPENLLESELFGFIKGAFTGAAS 224 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 ++GLL A+GG +FLDEIG+L QA LL+ +E++ P GS D + I+ T + Sbjct: 225 DKKGLLEIADGGTVFLDEIGDLPLSLQAKLLRVLEDREIRPLGSVISKKVDLRFISATNK 284 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTE 392 DL + V EGKFREDL+ R+N+ T ++P LR+R DIE + + + A G +++ + Sbjct: 285 DLIEEVKEGKFREDLFFRLNVITLSIPPLRERGRDIEILAHHFMRKFAIKMGKNLK-KID 343 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 ++ L + + W GN REL + + F + I Sbjct: 344 SQALKLLY----KHPWPGNIRELQNVIEQAVVFCETDTI 378 >UniRef50_Q0AAS7 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=Q0AAS7_ALHEH Length = 560 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 133/248 (53%), Gaps = 23/248 (9%) Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFVEVNC 247 +RMIEQ+ + A +L+ G +G GK +A+ I H SG FV +NC Sbjct: 149 QVSRMIEQV----ADTEASVLILGESGTGKEVVAQNI-------HYRSGRADKPFVPINC 197 Query: 248 ATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 + GD S LFGH KGAFTGA +R+G A GG +FLDEIG++ Q LL+ ++ Sbjct: 198 GAIPGDLLESELFGHEKGAFTGAISARQGRFELAKGGTIFLDEIGDMSMPMQVKLLRVLQ 257 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E+TF GS+R +D ++IA T RDL + + +FREDL+ R+N++ +P LR R D Sbjct: 258 ERTFERVGSNRTQEADVRVIAATHRDLEESIRNNEFREDLFYRLNVFPIEVPPLRARPSD 317 Query: 368 IEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 I P L E+ R G SVRF+ A + Q W GN REL+ V R+A Sbjct: 318 I-PVLIEELVRRIEEEGRGSVRFSAS------ALSCLSQYAWPGNVRELANVVERLAILC 370 Query: 427 TSGRITLD 434 + +D Sbjct: 371 AYDAVQVD 378 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 138/239 (57%), Gaps = 13/239 (5%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA-FV 243 GI ++ + EQI +VA S++ +++ G TG GK +A+ + EL + FSG + Sbjct: 204 GIVGQSEAMQFIFEQITQVA-PSQSNVIIFGETGTGKELIAQAVHELSE----FSGKKMI 258 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA + + S LFGH KG+FTGA E R+G A+ +FLDEIGEL + QA LL Sbjct: 259 RINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLL 318 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++EK G ++++ + ++I T R+L + VAEG+FR DLY R+N++ LP LR+ Sbjct: 319 RVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRE 378 Query: 364 RQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 R+EDI DY +E+ TG + F+ + +A +P W GN REL V R Sbjct: 379 RKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMA---NP---WLGNIRELENMVER 431 >UniRef50_A1K1I4 Sigma-54 dependent response regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K1I4_AZOSB Length = 451 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 136/242 (56%), Gaps = 11/242 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ +P ++ + + ++A + + +L+ G +G GK +AR + +L Q FV Sbjct: 153 GMIGASPAIGQLRQILHRIA-PTPSTVLIQGESGVGKEVVARALHQLSPRAEQ---PFVA 208 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNCA + + S LFGHVKGAFTGARE+R GL A+GG LFLDEIGEL Q+ LL+ Sbjct: 209 VNCAAISAELIESELFGHVKGAFTGAREARNGLFHYAHGGTLFLDEIGELPLALQSRLLR 268 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 +EE+ P G++++V D +++A T RDLR VA +FREDL+ R+ + T T+P LR+R Sbjct: 269 VLEERKVRPVGTEQEVPVDVRVLAATNRDLRAEVAACRFREDLFYRLEVITLTVPPLRER 328 Query: 365 QEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 ED+ +++ A G + + E +A W GN REL V R Sbjct: 329 AEDVPALAAAFMQQLAMQLGLPPLLISPEVSARLMAH------PWPGNVRELRNFVERSL 382 Query: 424 TF 425 F Sbjct: 383 LF 384 >UniRef50_B8IB91 Two component, sigma54 specific, transcriptional regulator, Fis family n=19 Tax=Proteobacteria RepID=B8IB91_METNO Length = 466 Score = 152 bits (383), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/231 (40%), Positives = 125/231 (54%), Gaps = 10/231 (4%) Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R +++ +A S A +LL G TG GK +AR L ++S FV VNCA + + Sbjct: 148 RRVQKAIGLAADSDATVLLQGETGTGKEVVAR---ALHDHGRRWSAPFVPVNCAAIPAEL 204 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGHVKGAFTGA R G R A GG LFLDEIG++ QA +L+AI++K P Sbjct: 205 LESELFGHVKGAFTGAAADRPGAFREAQGGTLFLDEIGDMPPAMQAKILRAIQDKVVTPV 264 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G R V+ + +++A T RDL LVA G FR+DLY R+N+ LP LR+R DI P ++ Sbjct: 265 GG-RPVAVEMRVVAATHRDLPALVASGGFRQDLYYRLNVIPIVLPPLRERLADILPLAEH 323 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 + A G R +A L + W GN REL + R A Sbjct: 324 FLALGAGGGGVPRRLTPQAAARLLRY------DWPGNVRELRNIIERAAVL 368 >UniRef50_A5G7F8 Two component, sigma-54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G7F8_GEOUR Length = 457 Score = 152 bits (383), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 89/227 (39%), Positives = 126/227 (55%), Gaps = 11/227 (4%) Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +GAGK AR + A + + FV VNC L +TA S LFGHV+GAFTGA Sbjct: 173 VLICGESGAGKELFARAV---HDASRRANKPFVTVNCGRLSANTAESELFGHVQGAFTGA 229 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + R GL A+ G LF+DEI E+ D Q LL+ +E TF G + +S D + + + Sbjct: 230 NKGRAGLFELADTGTLFMDEISEMPLDVQVKLLRILETGTFRRMGGNHDISVDVRFVFAS 289 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RF 389 + L V G+FREDL+ RINL +P LR+R EDI P L Y + A+ +G + Sbjct: 290 NKKLEDCVNRGEFREDLFHRINLLPINIPPLRERPEDIIP-LSYYFLKSANESGSANWEI 348 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 + EA A A+ +W GN REL ++ R + AT I+ D++ Sbjct: 349 SEEAMAALCAY------SWPGNVRELRNTIRRASILATDQIISSDLL 389 >UniRef50_Q7UEQ9 NtrC-like response regulator SasR n=1 Tax=Rhodopirellula baltica RepID=Q7UEQ9_RHOBA Length = 491 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 98/247 (39%), Positives = 129/247 (52%), Gaps = 17/247 (6%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I KVA +R P+L+ G +G GK +AR + +Q FV +NCA L S L Sbjct: 165 IAKVA-PTRKPVLIEGESGTGKEVVARSV---QQQSDLADRPFVTINCAALPAQLVESEL 220 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KG+FTGA + GL A+GG LF+DE+GEL Q LL+ +E+ + G R+ Sbjct: 221 FGHQKGSFTGATADQPGLFEVADGGTLFIDEVGELPPALQPKLLRVLEDGSLRRIGCHRE 280 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 +LIA T RDL + V G+FREDL RIN+ T LP LRQR+ DIE L + + R Sbjct: 281 RKVKVRLIAATNRDLLEEVKAGRFREDLLYRINVLTLNLPPLRQREGDIELLLHHFLPRG 340 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 S F+ E A T Q W GN R+L V R A IT+D + E Sbjct: 341 WS-------FDKE------ALDTMVQYHWPGNVRQLINVVERATILADHQVITMDDLPRE 387 Query: 440 INRLRYN 446 ++ L N Sbjct: 388 LSNLPSN 394 >UniRef50_A9GA77 Protein kinase n=15 Tax=Bacteria RepID=A9GA77_SORC5 Length = 1739 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/267 (37%), Positives = 139/267 (52%), Gaps = 15/267 (5%) Query: 175 RQQTLD--FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 RQQ L+ + I R P + +++V + + +L+ G +G GK +AR I Sbjct: 1394 RQQALEHRYDYGAIVGRGPALRAVFATLDRV-VDAPVNVLVTGESGTGKELVARAI---H 1449 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIG 292 A + SG F+ +NCA L S LFGHV+GAFTGA R GL+ +A GG LFLDE+G Sbjct: 1450 FAGPRKSGPFMGINCAALPAALLESELFGHVRGAFTGADRDRTGLVVAARGGTLFLDELG 1509 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 E+ + QA LL+ ++E+ P GS V DF+L+ T RDL A G+FREDLY R+ Sbjct: 1510 EMPLEVQAKLLRVLQEREVRPVGSAEAVRVDFRLVCATNRDLLAEAARGRFREDLYYRVA 1569 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHAS--LTGDSVRFNTEARRAWLAFATSPQATWRG 410 + LP LR R ED+ P L R A+ L + + + EA R Q W G Sbjct: 1570 VVQIRLPALRDRLEDL-PELALHFVRRAAEQLGRPAPQLSHEALRRL------GQHGWPG 1622 Query: 411 NFRELSASVTRMATFATSGRITLDVVE 437 N REL +T+ RI D V+ Sbjct: 1623 NVRELENVITKAVVLCDGRRIGPDDVD 1649 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 140/268 (52%), Gaps = 29/268 (10%) Query: 176 QQTLDFLKSGIATRNPHFNRMIEQ----------IEKVAIKSRAPILLNGPTGAGKSFLA 225 Q+T+ + G + RNP F ++ IE+VA + A +L+ G +G GK +A Sbjct: 118 QETVKSITIG-SHRNPIFRSLVGNSTSIRTVRRLIEQVA-DTEASVLVLGESGTGKEVVA 175 Query: 226 RRILELKQARHQFSG----AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 R I H FS F+ +NC + G+ S LFGH KGAFTGA +R+G A Sbjct: 176 RNI-------HAFSSRANKPFIPINCGAIPGELLESELFGHEKGAFTGAITTRQGRFELA 228 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 N G LFLDEIG++ Q LL+ ++E+ F GS++ + + ++IA T R+L + + EG Sbjct: 229 NSGTLFLDEIGDMPLPMQVKLLRVLQERCFERVGSNKSIDVNVRIIAATHRNLEEAIKEG 288 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 KFREDL+ R+N++ +P LR+R EDI + + R S V + A A Sbjct: 289 KFREDLFYRLNVFPIEMPPLRERAEDIPLIFNELIARIESENRPIVHLMPD------AMA 342 Query: 402 TSPQATWRGNFRELSASVTRMATFATSG 429 + +W GN REL+ V R+ G Sbjct: 343 ALSEYSWPGNIRELANLVERLTILYPKG 370 >UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CV14_9CLOT Length = 449 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 94/268 (35%), Positives = 144/268 (53%), Gaps = 17/268 (6%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 AS+ E ++ +SG+ ++++ +E+ A + ILL G +G GK A Sbjct: 137 ASKIKVESKKLELIYRSGV------MEKLVKDVERAAAVASV-ILLQGESGTGKEVFAHY 189 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGML 286 I E R+ G +E+NCA++ S LFG+ KGAFTGA + +EGL+ +A+ G L Sbjct: 190 IHENSPYRN---GPMIEINCASMPESLLESELFGYTKGAFTGALNTGKEGLIEAADKGTL 246 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEI + QA LL+ +E K+ GS + + DF+LIA T R L + V E FR D Sbjct: 247 FLDEINSMPLGLQAKLLRVLESKSITRIGSTKPIDVDFRLIAATNRSLVECVEERIFRAD 306 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQA 406 LY R+N+ T+P LR+R+EDI D+ +++ R++ + + A + T Sbjct: 307 LYYRLNVIPVTIPPLRERKEDIPVLTDFFLDKFCD------RYSLQKKFAKRVYRTFEAY 360 Query: 407 TWRGNFRELSASVTRMATFATSGRITLD 434 +W GN REL V RM +T IT++ Sbjct: 361 SWPGNVRELKNIVERMVIMSTVSTITIN 388 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 10/292 (3%) Query: 176 QQTLDFL-KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 +Q LDF K I T+N +++E ++A + +L+ G +G GK AR I L Sbjct: 130 RQQLDFHEKVNIITQNSKMLKLLEIARQIA-PTDCNVLITGESGTGKELFARYI-HLNSL 187 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R + G F+ VNC + + LFGH KGAFTGA ++GL+ A+ G LFLDEI E+ Sbjct: 188 RKK--GPFLAVNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEM 245 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 QA LL+ I+E+ F+ G+ + D + IA T RD+++ V GKFREDLY R+N+ Sbjct: 246 SLTMQAKLLRVIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVV 305 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRE 414 +P LR+R++DI + Y ++++ L + +E L P GN RE Sbjct: 306 NIEIPPLRERKDDIPLLVAYFSKKYSLLMKKEITGVSEEAINLLVNYEYP-----GNVRE 360 Query: 415 LSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 L + R S +I ++ + ++ L+ + +L E E I Sbjct: 361 LENIIERAVVLCNSSQIDVEHLPQDLKELKIEVFTKKEGKFMSLEELEKEYI 412 >UniRef50_A4JRG9 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=A4JRG9_BURVG Length = 500 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 110/313 (35%), Positives = 149/313 (47%), Gaps = 25/313 (7%) Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 IL+ G +G GK LAR I A + +G FV NCA + S LFGH +GAFTGA Sbjct: 207 ILILGESGTGKEMLARAI---HYASPRAAGPFVVENCAAVADTLLESELFGHKRGAFTGA 263 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 GL + ANGG +FLDEIG+ Q LL+ ++E P G+ R V D ++IA T Sbjct: 264 VHDHAGLFQRANGGTIFLDEIGDTSLAFQVRLLRVLQEGEVRPVGATRAVPVDVRVIAAT 323 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP---NLDYEVERHASLTGDSV 387 RDL + V G+FREDLY RI T LP LR+R D+ P L + H S + Sbjct: 324 HRDLEREVEAGRFREDLYYRIATATLALPPLRERSGDLVPIAHRLLQAIAEHESRPA-GL 382 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 F +A L +A W GN REL + R + I D ++ R + Sbjct: 383 DFARDALAVLLGYA------WPGNIRELRNEIYRAVALSDDDLIRADAFSPKVLRGQSGP 436 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 RP A A G E +D + M ++ + R K+ +A+ +SR G Sbjct: 437 AARRPEAQIASAGTLQERLDAMETMLIKEALLRHRWNKTRAASE---LGLSRAG------ 487 Query: 508 ADRLRKYLARFGL 520 LR+ + RFGL Sbjct: 488 ---LRQKMQRFGL 497 >UniRef50_A4J4M8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4M8_DESRM Length = 482 Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 153/290 (52%), Gaps = 18/290 (6%) Query: 180 DFLKSGI--ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + ++GI + R+P N + +K+A K+ A +L+ G TG GK +AR I + Sbjct: 137 ELFRNGIICSHRSPLVNAL-ALAKKIASKNIA-VLIQGETGVGKEVVARYI---HSQSLR 191 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 S F+ VNCA S LFGH KG+FTGA+ R+G+ + A+GG LFLDE+G Sbjct: 192 TSQPFIAVNCAAFTESLLESELFGHEKGSFTGAQGVRKGIFQIADGGTLFLDEVGNASPA 251 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 QA LL+ +E F P G ++ +D ++I+ T L VA +FREDLY R+N+ T Sbjct: 252 IQAKLLRVLECGEFLPVGGEKIKRTDVRVISATNVSLIDAVAMKQFREDLYYRLNVLTLD 311 Query: 358 LPGLRQRQEDIEPNLDYEVER-HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELS 416 +P LR+R+ D+EP +++ +R ++ G + A + + W GN REL+ Sbjct: 312 IPPLRERKCDVEPLVNHFAKRFYSHENGHELIIEPAAIDILINYP------WPGNVRELA 365 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 + + A A GRIT D++ D+I N E+ L L G E I Sbjct: 366 NVMAQAAALAEKGRITPDILPDQIK----NKGENNFEKLNLLTGDNIEEI 411 >UniRef50_A9FR32 Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FR32_SORC5 Length = 518 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 99/236 (41%), Positives = 132/236 (55%), Gaps = 13/236 (5%) Query: 188 TRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNC 247 +R+ R+ +I +A S P+L+ G TG GK +AR L + + S A V VNC Sbjct: 177 SRSAGMQRIEREIAVLAPLS-VPVLVTGETGVGKELVAR---ALHERSPRASRALVIVNC 232 Query: 248 ATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 A + S LFGH +GAFTGA +R G +A+GG +FLDEIGEL QA LL+A++ Sbjct: 233 AAIPAQLVESELFGHRRGAFTGATAARAGRFEAAHGGTIFLDEIGELPFSAQAQLLRALQ 292 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E P G DR D +++A T RDLR+ VAEG+FR DL+ R+ ++ +P LR+R+ED Sbjct: 293 EGEIQPVGEDRARRVDARVVAATNRDLRREVAEGRFRADLFHRLWVYPICVPPLRERRED 352 Query: 368 IEPNL--DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 I P L + E A L V F TE LA Q W GN REL +V R Sbjct: 353 I-PALCERFAAEIAAELGATRVDF-TEPALGALA-----QGAWPGNVRELKNAVER 401 >UniRef50_C0GUD7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GUD7_9DELT Length = 473 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 137/248 (55%), Gaps = 11/248 (4%) Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 DF + GI + N + + A +S + +L+ G TG GK +R + L R Sbjct: 131 DFKRCGIIGSSRSINSCLTTLASFA-RSNSNVLIYGETGTGKELFSRAV-HLNSPRSH-- 186 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 F+ ++CA L + STLFGH KGAFT A + GL+R A+GG LFLDEIGEL + Q Sbjct: 187 KPFIIIDCAALPENLVESTLFGHEKGAFTTADKKHTGLIRQAHGGSLFLDEIGELSLNTQ 246 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 + L+ ++E+ F P GS ++ DF+L+A T +DL ++ AEG FR DL R++ + TLP Sbjct: 247 KLFLRVLQERRFRPVGSATEIFCDFRLVAATNKDLDRMCAEGTFRRDLLFRLHSFALTLP 306 Query: 360 GLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 L R+ED+ + Y ++R G ++ + + E A+ + +W GN REL + Sbjct: 307 PLNSREEDVLELMYYFLDRICKKHGLENKQPSPEVIDAFAGY------SWPGNVRELINT 360 Query: 419 VTRMATFA 426 + MA A Sbjct: 361 LEHMAITA 368 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 91/249 (36%), Positives = 131/249 (52%), Gaps = 10/249 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI + P +++E I++VA KS + +LL G +G GK A I EL SG FV Sbjct: 250 GIIGKGPALQKILEIIKQVA-KSESTVLLRGESGTGKELFAHSIHELSSRN---SGPFVA 305 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA + S LFG+ +G+FTGAR+ + G + AN G LFLDEIG++ QA LL Sbjct: 306 INCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGDMPLTLQAKLL 365 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + I+EK P G + + +LIA T R+L +++ G FREDL+ R+N+ +P LRQ Sbjct: 366 RVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNVIPIFIPPLRQ 425 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R ED E L Y + ++ L + + A L + W GN REL V + Sbjct: 426 RPEDTELLLHYYLRKYCILLKKPFKILSYAALQQLV-----KYHWPGNIRELENLVEYLV 480 Query: 424 TFATSGRIT 432 I+ Sbjct: 481 NIHNQDIIS 489 >UniRef50_A6G0X1 Sigma-54 dependent transcriptional regulator n=2 Tax=Proteobacteria RepID=A6G0X1_9DELT Length = 346 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 103/268 (38%), Positives = 138/268 (51%), Gaps = 16/268 (5%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI T +P E + + A +S A IL+ G TG GK +A I L + R+Q AF Sbjct: 24 GIVTVSPQMRAFFELMRRAA-RSDASILIRGETGTGKELVAAAIHRLSRRRNQ---AFQA 79 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 +NCATL + A S LFGHV+GAFTGA R G+L A+GG +FLDE+ EL D QA +L+ Sbjct: 80 INCATLTPELAASELFGHVRGAFTGAIRDRRGVLALADGGTVFLDEVAELSLDIQARMLR 139 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E+TF P G VS D +L+A T + LR+ + G+FREDL RI + LP L +R Sbjct: 140 VLQERTFVPVGGTDPVSVDLRLLAATNKSLREELEAGRFREDLMYRIRIVPLFLPPLVER 199 Query: 365 QEDIEP------NLDYEVERHASLTGDSVRFNT-EARRAWLAFATSPQA-----TWRGNF 412 DIE + E R G+S + RR A A A W GN Sbjct: 200 DGDIEALTWHFIGVFNEQARAGDEPGESGEPDDLPPRRRVEAIAPDAHARMLAYPWPGNV 259 Query: 413 RELSASVTRMATFATSGRITLDVVEDEI 440 REL + +TLD + E+ Sbjct: 260 RELRNVLEYAFAIGEGPVLTLDELPPEL 287 >UniRef50_D2L8S7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio sp. FW1012B RepID=D2L8S7_9DELT Length = 467 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 105/281 (37%), Positives = 147/281 (52%), Gaps = 21/281 (7%) Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 ++P P VT L L+R ++ A R + + + I P ++ + + A Sbjct: 101 QKPLTPHRVT---LPLTRALEYRAQKAARRPRAV-LKREAIVGVGPAMEACLDLVAQAA- 155 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 S A +L+ G TG GK AR I + R + FV V+CA L S LFGHVKG Sbjct: 156 DSDASVLIAGETGTGKELFARAI-HVNSPRANNN--FVVVDCAALPETLVESVLFGHVKG 212 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA R+GL + A+GG LFLDEIGEL Q L+ +++ F P GS ++ SDF+ Sbjct: 213 AFTGADRDRDGLFKLADGGTLFLDEIGELSPGIQKTFLRVLQDGRFRPVGSKNELQSDFR 272 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP----NLDYEVERHAS 381 L++ T RDL + A G FREDL R+ TLP LR R EDI+P ++ ER+ Sbjct: 273 LVSATNRDLSAMAASGVFREDLLYRLRTIVITLPALRLRAEDIKPLAIHYMNRLCERYRL 332 Query: 382 LTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 T F+ E +A A+ TW GN REL +++ R+ Sbjct: 333 PTKG---FSEEFFQALAAY------TWPGNVRELCSTMERV 364 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/255 (41%), Positives = 138/255 (54%), Gaps = 16/255 (6%) Query: 182 LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA 241 L SGIA R +I+Q+ +VA + A +LL G TG GK A I L R Q A Sbjct: 204 LVSGIALRP-----VIQQVRQVA-PTDATVLLTGETGTGKELFAEAI-HLSSMRRQ--KA 254 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FV++NCA L S LFGH KGAFTGA R G A GG LFLDEIGEL D QA Sbjct: 255 FVKINCAALPPQLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAK 314 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ I+EK G + + ++IA T R L + V +G+FR+DLY R+ ++ LP L Sbjct: 315 LLRVIQEKEIERIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPAL 374 Query: 362 RQRQEDIEPNLDYEVERHASLT-GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R+R+EDI P L R+A++ G +R A + LA TW GN RE+ V Sbjct: 375 RERREDI-PLLLQHFARNAAMKYGKPIRHI--ASGSVLALM---DYTWPGNIREMEHMVE 428 Query: 421 RMATFATSGRITLDV 435 R + +IT+ V Sbjct: 429 RAVISSDEPQITIAV 443 >UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q4K4Y9_PSEF5 Length = 464 Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 147/290 (50%), Gaps = 14/290 (4%) Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 D L+S + R+ Q +VA +LL G TG GK+ +A+ I A + Sbjct: 151 DLLQSPLMADQEVSGRVFAQARQVA-DCDVKVLLQGETGVGKTLVAQFI---HNASARAR 206 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADE 298 F+ +NC L + + LFG+ GAFTGA + + GLL A+ G LFLDEIG+L Sbjct: 207 EPFLALNCGALPENLIEAELFGYAPGAFTGAGSKGKRGLLELAHNGTLFLDEIGDLPLAV 266 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 Q LLK IEE F P G D ++I+ T DL+Q VAEGKFR DLY R+N+ + Sbjct: 267 QVKLLKVIEENRFIPVGGLELKEVDVRIISATHHDLKQRVAEGKFRADLYYRLNVVPIAI 326 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 P LR+R E+I P L+Y +E V+++ EA +A W GN REL Sbjct: 327 PALRERSEEIGPLLEYYLEHFNQRYQRQVQWSLEALELLGEYA------WPGNIRELINV 380 Query: 419 VTRMATFATSGRI--TLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 V R+ SG++ LD+ ED I + N +SR L AE + I Sbjct: 381 VERL-VVTCSGQVIEALDLPEDLIEQQARNTDDSRLPLRKVLENAERQAI 429 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 163/313 (52%), Gaps = 18/313 (5%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P F R+++ ++ V +S A ILL G +G GK +AR I + ++ FV VNCA Sbjct: 147 SPAFRRVLQAVDSVR-ESNATILLTGESGTGKEMVARAI---HKHGNRADKPFVAVNCAA 202 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + S +FGH KGAFTGA R G + A+ G LFLDE+G++ QA +L+A++E+ Sbjct: 203 IPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQER 262 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 P G R+ D ++IA T ++L + VA +FREDLY R+N++ LP LR+R EDI Sbjct: 263 VIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIA 322 Query: 370 PNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 + + G + F+ EA +A ++A W GN REL V R AT + Sbjct: 323 LLARHFAHSLGATAGKRISGFSPEALQAMASYA------WPGNIRELQNCVER-ATIVAT 375 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDL---FDRMQLEHVIAICRQAK 485 G++ + E ++ + Q + A+ DL ++ +++A +Q+ Sbjct: 376 GQV---IEEKDLPGYLFGPQAQGTESSAAISVGPQVPSDLEAALAEVEKAYILAALQQSN 432 Query: 486 SLSAAGRQLFDVS 498 + AA QL +S Sbjct: 433 GVQAAAAQLIGIS 445 >UniRef50_A6UCY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=46 Tax=Alphaproteobacteria RepID=A6UCY3_SINMW Length = 549 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 172/336 (51%), Gaps = 36/336 (10%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I + +P R+I+ + + A +S P++L G +G GK +AR I + A + + FV V Sbjct: 183 IVSASPAMIRVID-LARRAAQSNIPVVLEGESGVGKEMVARAI---QAASDRATKPFVTV 238 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + G+ S LFGH KGAFTGA E G A+GG LFLDEIG+L + Q LL+A Sbjct: 239 NCGAIPGNLVESILFGHEKGAFTGASEKHSGKFVDADGGTLFLDEIGDLPLEVQVKLLRA 298 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +++ G+ + + +LI+ T +DL V EG+FREDLY R+N++ T+P LR+R+ Sbjct: 299 VQQGEIETVGARQPQKVNVRLISATNKDLINEVREGRFREDLYYRLNVFPITIPALRRRK 358 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI + VER A+ R + + A A W GN R+L ++ R Sbjct: 359 EDIPVLVRAFVERFAA----EQRLDQRLTVSNGAMALLTSYDWPGNIRQLENAIFRAVVL 414 Query: 426 ATSGRITL---DVVEDEI------NRLRYNWQES---------RPSALTALLGA-EAENI 466 A +T+ V +I +R +W + RP+A+TA GA E Sbjct: 415 AEGHELTVRDFPQVATQIPGYIVADRTGLSWGDGGPEGRTAPDRPAAVTADAGALETAPT 474 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAG--RQLFDVSRQ 500 D D ++E+ IA SLS G R+L +V + Sbjct: 475 DQRDE-RIENAIA------SLSEGGEVRKLAEVEEE 503 >UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIT5_BDEBA Length = 352 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 101/252 (40%), Positives = 136/252 (53%), Gaps = 23/252 (9%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFVEVNCATLR 251 +++ I++VA S+A IL+ G +G GK +AR I H SG FV +NC LR Sbjct: 45 LMKMIDRVA-PSQANILVLGESGTGKELIARAI-------HDRSGRKNKPFVAINCGALR 96 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 S LFGH KG+FTGA + GL +ANGG LFLDEIGEL QA LL+ I+E Sbjct: 97 ETLLESELFGHEKGSFTGAYNRKIGLAEAANGGTLFLDEIGELDPAIQAKLLRFIQEGEV 156 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 Y G + D +LI T R+L Q V G FREDL+ RIN + P LR+R+EDI Sbjct: 157 YRVGGKDPIKVDIRLICATNRELDQEVTRGNFREDLFYRINTIVVSAPPLRRRKEDIPAL 216 Query: 372 LDYEVE--RHASLT-GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 +++ + +HA L G SV N EA +A + + W GN REL R+ + Sbjct: 217 VNHFLNNSQHAYLNRGRSV--NEEAMKALIRYE------WPGNIRELQNVCERLQILSDG 268 Query: 429 GRITLDVVEDEI 440 I L+ + + I Sbjct: 269 HMIMLNDIPENI 280 >UniRef50_A8V0D6 Sigma 54-dependent transcriptional activator containing CheY-like receiver domain (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V0D6_9AQUI Length = 385 Score = 151 bits (381), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 140/244 (57%), Gaps = 12/244 (4%) Query: 202 KVAIKSRAP----ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 K +I+ AP +L+ G TG GK AR I L + + + F+ VNCA + + S Sbjct: 79 KESIRKIAPYDVNVLITGETGTGKEVAAREIHNLSKRKDK---PFIAVNCAAIPHELLES 135 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFG++KGAFTGA ++++GL+ A GG LFLDEIGEL Q+ LL+ +E K F P GS Sbjct: 136 ELFGYIKGAFTGAEKNKKGLIEEAEGGTLFLDEIGELPLTLQSKLLRFLETKKFRPVGST 195 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 +++S+D ++I+ T R+L++ + EG+FREDLY R++ T +P L++R+EDI + + ++ Sbjct: 196 KEISTDVRIISATNRNLKKEIEEGRFREDLYYRLSTITLRMPSLKERKEDIPLIISHILK 255 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 ++ T +L + + + +GN REL + + + + + L E Sbjct: 256 ELNQKYNKNI---TRISPQFLEYVNNLE--LKGNIRELKNIIEKSVILSENDTLNLFEFE 310 Query: 438 DEIN 441 E N Sbjct: 311 FESN 314 >UniRef50_Q4ZY83 Response regulator receiver:Sigma-54 factor, interaction region n=33 Tax=cellular organisms RepID=Q4ZY83_PSEU2 Length = 494 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 104/301 (34%), Positives = 152/301 (50%), Gaps = 19/301 (6%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI P + +I KVA + + +L+ G +G GK +AR + L + + + Sbjct: 165 GIIGSCPPMLDLYSKIRKVA-PTDSNVLIQGESGTGKELVARALHNLSR---RAKAPMIS 220 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNCA + S LFGH KGAFTGA R GL+ +A+GG LFLDEIGEL + QA LL+ Sbjct: 221 VNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAADGGTLFLDEIGELPLEAQARLLR 280 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E GS + D +LIA T RDL+ L G+FREDL+ R+++ LP LR+R Sbjct: 281 VLQEGEIRRVGSVQSQKVDVRLIAATHRDLKTLAKNGEFREDLFYRLHVIALKLPALRER 340 Query: 365 QEDI-EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 DI E + V + + D ++F +A +A + +W GN REL +V R Sbjct: 341 GNDILEIAHAFLVRQSGKVGRDDLKFAHDAEQAIRHY------SWPGNVRELENAVERSV 394 Query: 424 TFATSGRIT-----LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ---LE 475 + IT +D+ D ++ Y P + + AE++ L D Q LE Sbjct: 395 ILCENPEITADLLGIDIELDGLDDDEYMGMAPLPGSSGSSGNEPAEDLSLEDYFQHFVLE 454 Query: 476 H 476 H Sbjct: 455 H 455 >UniRef50_C4XRF4 Response regulator n=9 Tax=Desulfovibrionales RepID=C4XRF4_DESMR Length = 479 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 113/289 (39%), Positives = 144/289 (49%), Gaps = 29/289 (10%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQ----QTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 P + I L L R A ++ EER+ + SG +P ++Q+ + A Sbjct: 103 PSPIKQIMLTLKR----ALKYREERRGDHGAPVSLSLSGCIAASPRMQPCLDQVARAAAA 158 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFVEVNCATLRGDTAMSTLFGH 262 S A +L+ G TGAGK AR I H SG FV V+CA+L STLFGH Sbjct: 159 SAA-VLVTGETGAGKELFARLI-------HANSGRAKKPFVTVDCASLTETLVESTLFGH 210 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA R GL+R A+GG LFLDE+GE+ Q L+ + EKTF P G ++ S Sbjct: 211 KKGAFTGADADRVGLVRLADGGTLFLDEVGEMPLSLQKTFLRVLHEKTFRPVGGIEELRS 270 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 DF+LIA T RDL +V G FR DLY R+ LP LR R EDI+P + A+ Sbjct: 271 DFRLIAATNRDLAAMVEAGTFRRDLYFRLKTIELALPPLRCRVEDIKPLALAAADALAAE 330 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 + F+ E A+ W GN REL V R F SGR Sbjct: 331 YALPQKGFDAEFMAILEAY------DWPGNVRELRNVVER--AFLASGR 371 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 151 bits (381), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 92/246 (37%), Positives = 135/246 (54%), Gaps = 19/246 (7%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GA 241 + +P + QI +VA ++ IL+ G +G GK +A QA H+ S A Sbjct: 141 LVGNSPAMESLRNQIAQVA-PAKTSILITGESGTGKELVA-------QALHRLSPRSNKA 192 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 V +NCA + S LFGH +GAFTGA E ++GL+ ++GG LFLDEIGE + Q Sbjct: 193 LVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPK 252 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ ++EKTF G ++SSD ++IA T R+L Q++ EG FREDLY R+N+ + LP L Sbjct: 253 LLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPL 312 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R R+EDI +ER + G + + +++A+ + W GN REL + Sbjct: 313 RHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHY------EWPGNVRELQNILE 366 Query: 421 RMATFA 426 R F Sbjct: 367 RGLLFC 372 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 118/381 (30%), Positives = 183/381 (48%), Gaps = 54/381 (14%) Query: 147 QPRGPGEVTII------DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 +P P E++I+ L R NA+ + ++ + D L +++P + E + Sbjct: 106 KPFDPEELSIMMQKIVSQQSLVRENAVLRQALKQEYRFRDLL-----SKSPAMQSVFE-L 159 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 + A +S + IL+ G +G+GK LAR + + G FV V+CA L S LF Sbjct: 160 ARTAARSNSTILVLGESGSGKEVLARAV---HAESPRAGGPFVAVSCAALTESLLESELF 216 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH KG+FTGA R+G +A+GG LFLDE+G++G Q LL+ +EE+ F+ G + + Sbjct: 217 GHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPI 276 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 D ++IA T RDLR+ EGKFREDL+ R+N+ +P LR+R+EDI ++ VE Sbjct: 277 EVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVE--- 333 Query: 381 SLTGDSVRFNTEARRAWLAFATSPQAT-------WRGNFRELSASVTRMATFATSGRITL 433 R + E +R SP A W GN REL + R A AT I L Sbjct: 334 -------RLSVEMKRRI--EGVSPDAMGALMAHDWPGNVRELRNVLERGAVVATGTVIQL 384 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 ++ S+P L +L + ++ HV A+ A + + Sbjct: 385 ----SDLGLPTRLEAASKPGTLASL-----------EEVEKRHVAAVLAHANGNVSQSAR 429 Query: 494 LFDVSRQGKASVNDADRLRKY 514 + + R V +++RKY Sbjct: 430 ILGIDR-----VTLYNKMRKY 445 >UniRef50_Q46802 Uncharacterized sigma-54-dependent transcriptional regulator ygeV n=60 Tax=Gammaproteobacteria RepID=YGEV_ECOLI Length = 592 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 94/264 (35%), Positives = 139/264 (52%), Gaps = 36/264 (13%) Query: 187 ATRNPHFNRMIEQ----------IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 A PH +++ + I ++A S + +++ G +G GK +AR I +L R+ Sbjct: 263 APDEPHIEQLVGECRVMRQLKRLISRIA-PSPSSVMVVGESGTGKEVVARAIHKLSGRRN 321 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELG 295 + F+ +NCA + S LFG+VKGAFTGA + GL+++AN G LFLDEIG++ Sbjct: 322 K---PFIAINCAAIPEQLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMP 378 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 QA LL+AIE + P G+ + D ++I+ T ++L Q +AEGKFREDL+ R+N+ Sbjct: 379 LMLQAKLLRAIEAREILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIP 438 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTG--------DSVRFNTEARRAWLAFATSPQAT 407 TLP LR+RQEDIE + Y + H G D V + R Sbjct: 439 ITLPPLRERQEDIELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHR------------- 485 Query: 408 WRGNFRELSASVTRMATFATSGRI 431 W GN RELS + + SG + Sbjct: 486 WPGNLRELSNLMEYLVNVVPSGEV 509 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 131/233 (56%), Gaps = 12/233 (5%) Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 KVA +++A +LL G TG GK AR I Q +Q +G FV +NCA + + LFG Sbjct: 282 KVA-RTKATVLLTGETGTGKELFARLI---HQMSNQANGPFVAINCAAMPETLLEAELFG 337 Query: 262 HVKGAFTGARESRE-GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 + +GAFTGAR G A+GG LFLDE GE+ QA LL+ +E K GS R V Sbjct: 338 YEEGAFTGARRGGAVGKFEQASGGTLFLDEAGEMSNALQAKLLRVLETKQVDRVGSCRPV 397 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 +DF+LIA T DL QLVA+GKFR+DLY R+ T +P LR+R+EDI + ++R A Sbjct: 398 QTDFRLIAATNADLNQLVADGKFRKDLYYRLVAITLNIPPLRERKEDIPYLISAFMDRFA 457 Query: 381 SLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 G RF +A A+L + W GN REL+ ++ + ++T Sbjct: 458 QEYGLRHKRFCEDALHAFLEY------DWPGNVRELANAIDYIMAIGEEEKVT 504 >UniRef50_A6W2X2 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Proteobacteria RepID=A6W2X2_MARMS Length = 455 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 13/242 (5%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++E+I ++ +L+ GP+G GK ++R + +L H+ + FV V+C + + Sbjct: 157 LVERIAPTDVR----VLVTGPSGTGKEVISRTLHDLS---HRAAKPFVSVHCGAIPAELL 209 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFG+VKGAFTGA + + GLL A+GG LFLDEIGE+ Q LL+ ++E TF+P G Sbjct: 210 ESELFGYVKGAFTGAEKDKVGLLSLADGGTLFLDEIGEMPLAMQVKLLRVLQEGTFFPVG 269 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 Q D ++I+ T DL + V EG FREDLY RI L +R ED+ L Sbjct: 270 GREQKHIDIRVISATNADLVEKVREGSFREDLYYRIKGVNIETQALSERLEDVPVLLQSF 329 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 ++R + ++ + EA + W + W GN REL ++ +A+ GRITLD Sbjct: 330 LQRLQNQQSIPLQLSPEAMQ-WFR-----EQAWPGNVRELKNALESVASICPQGRITLDD 383 Query: 436 VE 437 ++ Sbjct: 384 IQ 385 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 93/262 (35%), Positives = 141/262 (53%), Gaps = 10/262 (3%) Query: 173 EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 EE Q D + S I ++ H + + I KV + S +L+ G +G GK +AR I Sbjct: 131 EELDQETDSVDSFIG-QSRHMQDVFKTIGKV-VDSDITVLIQGESGTGKEVVARTI---H 185 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIG 292 + S F+++NCAT+ S LFGH KG+FTGA + G A+ G++FLDEIG Sbjct: 186 SNSRRSSRPFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIG 245 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 EL QA LL+ ++EK F G + + D +++A T R+L +V EGKFREDLY R+N Sbjct: 246 ELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLN 305 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNF 412 + LP LR+R+EDI ++Y V++ A ++ + + + FA + W GN Sbjct: 306 VVNVKLPPLRERKEDISLLINYFVKKFARKYNKNI---SGISQEAMIFA--EKYAWPGNV 360 Query: 413 RELSASVTRMATFATSGRITLD 434 RE+ + A + + LD Sbjct: 361 REIKNVCEQAVVMARNSVLMLD 382 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 127/232 (54%), Gaps = 10/232 (4%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IE+VA S A +L+ G +G GK +AR L +R FV VNC + G+ S L Sbjct: 158 IEQVA-DSNATVLILGESGTGKEVVARN-LHYHSSRR--GNPFVPVNCGAIPGELLESEL 213 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA +R+G A G LFLDEIG++ Q LL+ ++E+TF GS++ Sbjct: 214 FGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRVLQERTFERVGSNKL 273 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T R+L + + EG FREDLY R+N++ +P LR+R EDI ++ + R Sbjct: 274 IHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERVEDIPLLINEIITRI 333 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 G SVR A A Q W GN REL+ V R+ G + Sbjct: 334 EHEKGASVRLTPAAVMALC------QYPWPGNVRELANLVERLTILHPYGVV 379 >UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Citreicella sp. SE45 RepID=D0D5X9_9RHOB Length = 647 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 155/296 (52%), Gaps = 15/296 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I +P IE E+ A ++ +L+ G TG GK AR ++ + R +V V Sbjct: 328 IVCASPKMLEAIELAERAA-QANVSVLIQGETGVGKELFAR-LIHSRLGRP--DSPYVPV 383 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 NCA + D + LFG+V GAFTGA R R G ANGG+L LDEIG++ + Q LL+ Sbjct: 384 NCAAISNDLIGAELFGYVDGAFTGAARGGRAGKFEQANGGLLCLDEIGDMPIELQPYLLR 443 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 A+E++ Y G ++ D +L+A T RDLRQ + +GKFR DL+ RI + T +P LR+R Sbjct: 444 ALEQRAIYRMGDSKRRPVDVRLVAMTNRDLRQEIEKGKFRRDLFYRIGVVTIEVPPLRER 503 Query: 365 QEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 DI L++ + A TG + F +A + ++ W GN REL +V R+ Sbjct: 504 GSDILALLEHFSDHFAKETGRPKMSFGADALKMLASY------RWPGNVRELRNAVQRIY 557 Query: 424 TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 + +T V+D LR ++ ES +L ++L + +++ + + IA Sbjct: 558 LVCSDPVVT---VKDLPPELRDDFDESEEDSLESILSGNSGDLESIEASAIRRTIA 610 >UniRef50_B0TS74 Putative sigma54 specific transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=B0TS74_SHEHH Length = 555 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 32/296 (10%) Query: 194 NRMIEQ---IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----AFVEVN 246 N+M++ I +VA KS + IL++G +G GK A QA H++S FV +N Sbjct: 250 NKMLQLKTLIARVA-KSPSSILISGESGTGKEVFA-------QAIHKYSDRSEQNFVAIN 301 Query: 247 CATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 CA + S LFG+VKGAFTGA + + GL+++AN G LFLDEIG++ Q+ LL+ Sbjct: 302 CAAIPEQLLESELFGYVKGAFTGALTKGKVGLIQAANNGTLFLDEIGDMSMTLQSKLLRV 361 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +EE+ P GS+ + ++I+ T R+ +++A +FREDLY R+N+ LP LR+R+ Sbjct: 362 LEEREVMPLGSNASTPVNIRIISATNRNFAEMIAANEFREDLYYRLNVIPLYLPALRERE 421 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 DIE + Y ++RH+ G TE + W GN RELS V + Sbjct: 422 GDIELLVYYFLDRHSQAIGTCYPGITEE-----VINSLNAYHWPGNIRELSNLVEYLVNI 476 Query: 426 ATSG-RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDL--FDRMQLEHVI 478 SG +I +D++ + ++ + T ++ +N+ L +R+++E I Sbjct: 477 VPSGDQIDIDLLPP--------YFDTPQESCTPMVSINDDNVSLEEMERIKIEDSI 524 >UniRef50_A9F816 Protein kinase n=12 Tax=Bacteria RepID=A9F816_SORC5 Length = 1673 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 134/248 (54%), Gaps = 12/248 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 IA R+ ++ E+VA +S + + G +G GK +AR I + G FV V Sbjct: 1368 IAGRSAPMRAVLALCERVA-ESDVTVTVTGESGTGKELVARAI---HAGGPRRDGPFVAV 1423 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGHVKGAFTGA GL SA GG LFLDE+GE+ QA LL+A Sbjct: 1424 NCAALPEALLESELFGHVKGAFTGAVRDHGGLFLSARGGTLFLDELGEVPLGVQAKLLRA 1483 Query: 306 IEEKTFYPFGSDRQVS-SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E++ P GSDR VS +D +++ T RDLR VA G+FREDLY R+++ LP LR R Sbjct: 1484 LQERSIRPVGSDRSVSVADVRVVCATNRDLRDEVARGRFREDLYYRVSVIEIRLPPLRDR 1543 Query: 365 QEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 EDI VE+ A+ G + R + A R ++ W GN R+L ++R Sbjct: 1544 PEDIPAIAQAIVEKLAARQGRPAFRLSRGALRRLSSYG------WPGNVRQLENVLSRAC 1597 Query: 424 TFATSGRI 431 + I Sbjct: 1598 VLSPGPEI 1605 >UniRef50_C6NWM8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C6NWM8_9GAMM Length = 447 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 98/253 (38%), Positives = 135/253 (53%), Gaps = 14/253 (5%) Query: 192 HFNRMIEQIEKV--AIKSRAPILLNGPTGAGKSFLARRI-LELKQARHQFSGAFVEVNCA 248 H M+E + K ++ A +LL G +G GK LAR I E +AR FV VNCA Sbjct: 134 HSPVMLETLIKARRVAQTEASVLLTGESGVGKEVLARFIHRESNRARE----PFVAVNCA 189 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 + +TLFGH KGAFTGA +S G A GG L LDE+ E+ QA LL+ ++E Sbjct: 190 AIPESLLEATLFGHEKGAFTGASQSSPGKFEQAQGGTLLLDEVTEMALPLQAKLLRVLQE 249 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 + G R + D ++IA + RDLRQ V+EGKFREDLY R+ + +P LRQR+EDI Sbjct: 250 RELERVGGRRTIRLDVRVIATSNRDLRQAVSEGKFREDLYYRLQVIPLCVPPLRQRREDI 309 Query: 369 EPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFAT 427 P + +H + + + EA+ L++ W GN REL ++ R A F+ Sbjct: 310 LPLAQRLLAKHCERMAIAPKSLDPEAQAVLLSY------PWPGNVRELDNALQRAAIFSA 363 Query: 428 SGRITLDVVEDEI 440 I D + EI Sbjct: 364 DTVIRSDDLGLEI 376 >UniRef50_B4SIJ8 Sigma54 specific transcriptional regulator, Fis family n=13 Tax=Proteobacteria RepID=B4SIJ8_STRM5 Length = 501 Score = 150 bits (380), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 91/250 (36%), Positives = 134/250 (53%), Gaps = 12/250 (4%) Query: 183 KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAF 242 + G P + IE+VA +L+ G +G GK ++R I + R G F Sbjct: 135 EQGPTGHGPAVTELRTMIEQVAAFDTT-VLVLGESGTGKEVVSRSIHQRSPRR---DGPF 190 Query: 243 VEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAML 302 V +NC + D S LFGH KGAFTGA +R+G A GG L LDEIG++ Q L Sbjct: 191 VAINCGAIPPDLLESELFGHEKGAFTGALTARKGRFEMAEGGTLLLDEIGDMSLPMQVKL 250 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ ++E++F G ++ + + +++A T RDL +AEGKFREDL+ R+N++ +P LR Sbjct: 251 LRVLQERSFERVGGNQTIRCNVRVVAATHRDLETRIAEGKFREDLFYRLNVFPIDVPALR 310 Query: 363 QRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 +R+ED+ P L + + TG VRF EA +A + W GN REL+ V R Sbjct: 311 ERREDL-PVLVETIAAQLARTGRGEVRFTAEALQALAGY------EWPGNVRELTNLVER 363 Query: 422 MATFATSGRI 431 +A G + Sbjct: 364 LAVLHPGGSV 373 >UniRef50_A1VBP1 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfovibrionales RepID=A1VBP1_DESVV Length = 469 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/233 (41%), Positives = 130/233 (55%), Gaps = 11/233 (4%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IEKVA + P+L+ G +GAGK A I L + F+ NCATL+ + A S L Sbjct: 159 IEKVA-PTDVPVLITGESGAGKEVAAHAIQSLGT---RADKPFIIKNCATLQKELARSEL 214 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGHV+G+FTGA ESR+GL+ AN G LFLDEIGEL + QA LL+ +E KT+ G Sbjct: 215 FGHVRGSFTGALESRDGLMAFANKGTLFLDEIGELPMEVQASLLRVLENKTYRRVGEKDH 274 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 S D +LI T R L V G+F E LY RIN++ +P LR+R+EDI ++ + R Sbjct: 275 RSCDLRLIFATNRTLAGEVEAGRFHEALYHRINVFNIEMPPLRERKEDIPLLAEFFLARL 334 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + D +R + +A + +A W GN REL + R A + IT Sbjct: 335 GN-GRDDLRISDKAMSCLMQYA------WPGNVRELRNVLERSIILAENNLIT 380 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 22/287 (7%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 F + I + ++++ I +VA S A +L+ G +G GK +AR I +H+ Sbjct: 139 FGRKTIIGNSKEIQKVMDMISRVAFSS-ATVLITGESGTGKELVARAIHFNGNRKHK--- 194 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 FV +NCATL S LFGHV+GAFTGA + ++GL A+GG LF+DEIG++ QA Sbjct: 195 KFVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGLFEEADGGTLFMDEIGDIPTPVQA 254 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 +L+ ++E F P G + D ++IA T + L + V + +FREDLY R+N+ +P Sbjct: 255 KILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKKVRDKEFREDLYYRLNVINIKMPP 314 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+R+EDI + + +E++ ++ + E + W GN REL ++ Sbjct: 315 LRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEMELYKYH------WPGNVRELENAI 368 Query: 420 TRMATFATSGRITLDVV------EDEINR-----LRYNWQESRPSAL 455 R T I L V+ ED N L + ++E+R AL Sbjct: 369 ERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSHPYKEARKKAL 415 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 14/246 (5%) Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 ++P R I+ KV ++ +L+ G +G GK A+ I E +A F+ +NC Sbjct: 240 KSPVIQRTIQLARKVC-SVKSTVLILGESGVGKEVFAKAIHEASEAA---KAPFISINCG 295 Query: 249 TLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 + S LFG+ +GAF+GA + ++G + A GG LFLDEIGE+ D Q LL+ ++ Sbjct: 296 AIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQ 355 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E+ +Y G +++++ DF++IA T RDL++ + +G FREDLY R+N+ + +P LR+R+ED Sbjct: 356 ERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLQIPPLRERRED 415 Query: 368 IEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATS-PQATWRGNFRELSASVTRMATF 425 I +E S D S+ +N R + W GN REL V R+ F Sbjct: 416 I-------IELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVF 468 Query: 426 ATSGRI 431 AT G I Sbjct: 469 ATDGII 474 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 150 bits (380), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 139/262 (53%), Gaps = 21/262 (8%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG---- 240 GI +P + +E+VA + +L++G +G GK +AR A H+ SG Sbjct: 148 GIIGESPPIQELYAILERVA-DTPTTVLISGESGTGKELVAR-------ALHENSGRRDR 199 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 F++VNCA + D S LFG+ +GAFTGA S+ G A+GG LFLDEIGE+ + Q Sbjct: 200 PFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQV 259 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+ ++E F G + + D +L+A T RDL++ +A G FREDL+ R+N+ LP Sbjct: 260 KLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPA 319 Query: 361 LRQRQEDIEPNL--DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 LR R+ DI P+L + + +A L EA + A W GN REL Sbjct: 320 LRDRRSDI-PHLCAHFVAKFNARLKKSIESIEPEALERLASHA------WPGNIRELENV 372 Query: 419 VTRMATFATSGRITLDVVEDEI 440 V R FA RI LD + +EI Sbjct: 373 VERALLFADGARIRLDDLPEEI 394 >UniRef50_A9G869 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G869_SORC5 Length = 475 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/249 (37%), Positives = 136/249 (54%), Gaps = 11/249 (4%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + +P +++ +E+VA SRA +L+ G TG GK +A I +A + V + Sbjct: 145 VIASHPSMAKVLRLVEQVA-PSRASVLIVGETGTGKELIAEMI---HRASPRAKAPLVRL 200 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGH +GAFTGA REG A+GG LFLDE+ E+ Q LL+ Sbjct: 201 NCAALSESLLESELFGHERGAFTGAVGRREGRFEQASGGTLFLDEVSEIPLATQVKLLRF 260 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+TF G + + D +++A + RDLRQ +AEG FREDLY R+N+ T +P LR+R+ Sbjct: 261 LQERTFERVGGNETLKVDVRILAASNRDLRQRIAEGVFREDLYYRLNVVTLEIPPLRERR 320 Query: 366 EDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 DI + + R+A G + F EA A ++ ++ GN REL ++ R A Sbjct: 321 SDIPELATFFLGRYAQENGKRIEGFTDEALSALTSY------SFPGNVRELENAIERAAV 374 Query: 425 FATSGRITL 433 RI L Sbjct: 375 LCDGARIEL 383 >UniRef50_C4XN49 Fis family transcriptional regulator n=4 Tax=Desulfovibrio RepID=C4XN49_DESMR Length = 443 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 133/255 (52%), Gaps = 13/255 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I T+N ++ + +A +S A +L+ G +G GK AR I L A G FV V Sbjct: 137 ILTKNKALAHTLDLLPPIA-ESGAAVLILGESGTGKELFARAIHNLSPAA---KGPFVAV 192 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + G S LFGHV+GAFT A+ R+G A GG LFLDEIGEL Q LL+ Sbjct: 193 NCGAIPGQLLESELFGHVRGAFTDAKSDRKGRFAMAQGGTLFLDEIGELPLPLQVKLLRV 252 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E + P GSD +++ +++A T RDL ++AEG FR DL+ R+++ LP LR R Sbjct: 253 LQEHAYEPLGSDTSTTTNARIVAATNRDLETMIAEGTFRRDLFYRLSVARMALPPLRSRP 312 Query: 366 EDIEPNLDYEVERHASLTGDS--VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 EDI P L + +L G + A R L + + GN REL + Sbjct: 313 EDI-PLLAHAFIERQNLIGQKAVTGLSDAATRRLL------RHDYPGNVRELQNIIEYAC 365 Query: 424 TFATSGRITLDVVED 438 ++GRIT + + D Sbjct: 366 ILCSAGRITPEHLPD 380 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/252 (35%), Positives = 141/252 (55%), Gaps = 11/252 (4%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 +G+ TR+P ++ +KVA K A +L++G +G GK L R I K++ H +G FV Sbjct: 246 AGLITRSPGMQQITALAQKVA-KVSATVLISGESGVGKEVLTRLIH--KESAHH-AGPFV 301 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAML 302 ++NC + D S LFG+ GAFTGA R+ + G++ A+ G LFLDEIGEL D Q L Sbjct: 302 KINCGAIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKL 361 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ ++++T G R + D +++A T RDL+ +V +FR DL+ R+N+ +P LR Sbjct: 362 LQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLR 421 Query: 363 QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 +R+EDI P + + ++ + +++ + R + A A W GN REL V R+ Sbjct: 422 ERREDILPLIQHYLDEL------NAQYDLDKRLSEQALAALLDYDWPGNVRELRNMVERL 475 Query: 423 ATFATSGRITLD 434 A I D Sbjct: 476 VVTAPESLIRSD 487 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 145/274 (52%), Gaps = 15/274 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I T+N + ++ VA + + +L+ G +G GK +A+ I +A H+ F+++ Sbjct: 266 IITKNNDMQKKLDTAYHVA-RVDSTVLILGESGVGKELIAQLI---HRASHRSEKPFIKI 321 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 NC + + S FG+ G+FTGA +E ++GL A+GG LFLDE+GEL + Q +L+ Sbjct: 322 NCGAIPANLLESEFFGYEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLR 381 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 AI+EK G + + D ++IA T RDL ++ E FREDLY R+N+ T+P LRQR Sbjct: 382 AIQEKEILRVGGKKTIKLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQR 441 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 +ED+ P + R+ + G + E L + W GN REL ++ R+ Sbjct: 442 KEDVIPIALELLARYNTAYGYQKWIHPEVMDCLLNY------DWPGNIRELENTIERLVV 495 Query: 425 FATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 + IT +D + ++Y P+ LT+L Sbjct: 496 TSMDDCIT----KDAMAEIKYIDVHPAPNGLTSL 525 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/243 (38%), Positives = 131/243 (53%), Gaps = 19/243 (7%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + E IEKVA S + +L+ G +G GK +AR I +L ++ + FV VNCA + D Sbjct: 154 LFEMIEKVA-GSDSTVLIQGESGTGKELVARAIHDLS---NRATKNFVPVNCAAIPDDLL 209 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGHVKG+FTGA +R G A+ G LFLDEIG++ + Q LL+ ++ K P G Sbjct: 210 ESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVG 269 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + R D ++IA T ++L LVA FREDLY R+++ TLP LR+R+ DI L+ Sbjct: 270 AARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNF 329 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQAT-----WRGNFRELSASVTRMATFATSGR 430 +E +FN +R +F + W GN REL V R+ SG Sbjct: 330 LE----------KFNRNKQRKVQSFDKNTMDILCNFDWPGNVRELENLVERLVILKGSGT 379 Query: 431 ITL 433 IT Sbjct: 380 ITF 382 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 12/234 (5%) Query: 204 AIKSRAP----ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 AI AP +L+ G TG GK +AR + L R + V++NCA L S L Sbjct: 572 AIGQVAPTDYTVLIMGETGTGKELIARAVHSLSARRDR---PVVKINCAALPAQLIESEL 628 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH +G+FTGA E R G ANGG LFLDEIGEL + QA LL+AI+EK G Sbjct: 629 FGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQAKLLRAIQEKEIERVGGKGV 688 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + + ++IA T R+L+Q VA G+FR DLY R+N++ +P LR+RQEDI P + +++ Sbjct: 689 ILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVPPLRERQEDILPLTMHFLQKI 748 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + G + A L Q W GN REL + R + + S +TL Sbjct: 749 SKKLGKPITNIANASLQQLL-----QYPWPGNIRELEHVLERSSILSQSATLTL 797 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/303 (31%), Positives = 163/303 (53%), Gaps = 12/303 (3%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I T++P F ++++ ++ + + +L+ G TG GKS LA+ I L R FV+V Sbjct: 225 IFTKSPTFQKVLDLVKSCS-EHNVNVLIEGETGIGKSLLAKYIHLLSPRR---DAPFVKV 280 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + + LFG+VKGAFTGA + + G A+GG LFLDEIG++ QA +L Sbjct: 281 NCAAIPENLLEAELFGYVKGAFTGATKDKPGKAEIADGGTLFLDEIGDMPLSLQAKILHL 340 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +EEK F GS+ ++ ++IA T +D+++L+ +G+FREDLY R+++ LP LR+R+ Sbjct: 341 VEEKEFERLGSNTPRKTNTRIIASTNKDIKELMRQGRFREDLYYRLSVVNIYLPPLRERK 400 Query: 366 EDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 EDI ++ +E+++ L V+ + +A + L + + GN REL + + Sbjct: 401 EDIPLLINNFIEKYSKLYSKRVKSISGDAIKMLLGY------DFPGNIRELEHIIEKAVI 454 Query: 425 FATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQA 484 I ++ + + + QE + + A+L N L +M H + R+ Sbjct: 455 TCRGSIINIEDISLDFQSNNHKQQEEK-ERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKL 513 Query: 485 KSL 487 K L Sbjct: 514 KEL 516 >UniRef50_A9G5P2 Sigma-54 dependent transcriptional regulator n=2 Tax=Proteobacteria RepID=A9G5P2_SORC5 Length = 625 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 13/281 (4%) Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 ++E + +V SR P++L+G TG GK +AR I E + + V VNC + Sbjct: 286 QMREVLETVRRVG-ASRIPVILHGETGTGKEVVARMIHEGGPRKGRR---VVRVNCGAIP 341 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 D STLFGH +GAFTGA + ++G+ A+GG +FLDEIGEL QA LL+ +E +F Sbjct: 342 KDLVESTLFGHERGAFTGALQQQKGVFEEADGGTVFLDEIGELPPPAQAALLRVLESGSF 401 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 GS R++ D +++A T RDL + A G FR DLY R+ +P LR R ++IEP Sbjct: 402 SRVGSSREIEVDVRVVAATHRDLEAMAASGAFRADLYYRLGGVVIDIPPLRARTDEIEPL 461 Query: 372 LDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 + + ++ G V EA A+A W GN REL + R Sbjct: 462 ARHFLRAASAANGRHVEGITPEALALLCAYA------WPGNVRELRNVIERAVVVTPGAL 515 Query: 431 ITLDVVEDEINRLRYNWQESRPS--ALTALLGAEAENIDLF 469 + L+ + + + RP+ A LG ++ +F Sbjct: 516 VGLEDLPPRVRAAAARGESERPADRGTDAELGGAPPDVAVF 556 >UniRef50_D0LUW9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LUW9_HALO1 Length = 623 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/276 (37%), Positives = 144/276 (52%), Gaps = 22/276 (7%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG----A 241 + R+P R+ + KVA + +L+ G TG GK +A +A H+ G Sbjct: 293 LVIRDPQMQRVHALVRKVA-DTNITVLILGETGVGKEVVA-------EAVHRSGGRQQRP 344 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FV +NCA++ G+ S LFGHVKGAFTGA G +A+GG LFLDEIGE+ A QA Sbjct: 345 FVRLNCASIPGNLLESELFGHVKGAFTGADRQHTGYFEAASGGTLFLDEIGEMPAALQAK 404 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+ +E++ G R+++ D +++ T RDL V +G+FREDLY RI+++T +P L Sbjct: 405 LLRVLEQRRITRVGDTREIAVDTRVVCATHRDLEDEVRQGRFREDLYFRISVFTVLVPPL 464 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 R R +I P + R A G + R + EA LA Q W GN REL +V Sbjct: 465 RDRVSEIAPLAHWFARRAAREQGGAAPRLSDEA----LAVLEGHQ--WPGNVRELRNAVE 518 Query: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 R +G I + E RLR + P AL Sbjct: 519 RACVLQEAGVI---LPEHLPERLRDARAPAGPGALA 551 >UniRef50_D0MD30 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD30_RHOM4 Length = 442 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/249 (37%), Positives = 131/249 (52%), Gaps = 11/249 (4%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 GI ++ +I++ VA ++ +LL G +G GK +A I + RH G FV Sbjct: 11 GIVGQSAAIRNVIDRARMVA-RTDITVLLQGESGVGKELIAHAIHGMSPRRH---GPFVI 66 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNC + S LFG KGA+TGA E R+G A+GG +FLDEIGE+ Q LL+ Sbjct: 67 VNCGAIPEGLIESELFGAEKGAYTGAVERRKGYFEEADGGTIFLDEIGEMPLAAQVRLLR 126 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 +E F GS R + +D ++IA T +DL + V G FREDLY RI+ +P LR+R Sbjct: 127 VLETGEFTRVGSSRPIKTDVRIIAATNKDLAKAVRAGHFREDLYYRISTVIIEIPPLRER 186 Query: 365 QEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +EDI P +Y + R A G + R + AR+ L + W GN REL ++A Sbjct: 187 REDIIPLFEYFLHRAAQRYGTPLRRLDESARQLLLRY------HWPGNVRELRNVAEQVA 240 Query: 424 TFATSGRIT 432 T IT Sbjct: 241 VLLTKTTIT 249 >UniRef50_B9ZLA8 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZLA8_9GAMM Length = 437 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/244 (37%), Positives = 137/244 (56%), Gaps = 14/244 (5%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 R+ +QI +VA +++ +LL G +G GK AR + L + +G F+ VNCAT+ Sbjct: 143 MQRLRDQIHRVAT-TQSTVLLRGESGTGKELAARALHRLSS---RATGPFIAVNCATIPE 198 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 + LFGH +GA+TGA ++R GL+++A+GG LFLDEIGEL QA LL+ +++ Sbjct: 199 GLVEAELFGHAQGAYTGAVKARTGLIQAAHGGTLFLDEIGELAPAAQARLLRVLQDGEIR 258 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P G++ + D +L+A T RDL ++ E FR DLY R+ + ++P LR+R+EDI P L Sbjct: 259 PVGANENLKVDVRLLAATHRDLEAMIGEQAFRADLYYRLRVLELSIPPLRERREDI-PAL 317 Query: 373 DYEVERH--ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 RH A L G+ A A + W GN REL+ ++ R + GR Sbjct: 318 ----ARHFLADLAGNG---GPPAELTPAAQKSLETHDWPGNVRELANALERGWVLSPDGR 370 Query: 431 ITLD 434 I D Sbjct: 371 IEPD 374 >UniRef50_B1B869 Propionate catabolism operon regulatory protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B869_CLOBO Length = 637 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 172/324 (53%), Gaps = 26/324 (8%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS----GA 241 I +N I++ +K + K PIL+ GP+G GK A Q+ H +S G Sbjct: 320 IIYKNKETEECIKRAKKYS-KYDVPILITGPSGVGKELFA-------QSIHNYSNRSTGP 371 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQA 300 FV +NCA L + S LFG+V+GAFTGA + + G+ A+ G +FLDEIGEL + Q Sbjct: 372 FVAINCAALPPNLIESELFGYVEGAFTGAVKGGKSGIFELAHKGTIFLDEIGELPLEFQG 431 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 +L+ ++E+ G D+ + D ++I T ++L +++ E +FREDLY RIN+ +P Sbjct: 432 RILRVLQEREVMRIGDDKVIPIDVRIITATNKNLVKMIEEKRFREDLYFRINILMLDIPS 491 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 L +R+EDI+ + + ++++ V+ T+ +L ++GN REL + ++ Sbjct: 492 LNKRREDIDILIQFFLKKYNHKYNKKVKGLTKESILYLM-----NYDYKGNVRELESIIS 546 Query: 421 RMATFATSGRITLDVVE--DEINRLRYNWQESRPSALTA--LLGAEA-ENIDLFDRMQLE 475 R + ++LD + DEIN + N + ++ + +E+ + +D ++ + Sbjct: 547 RGIILCENEYVSLDEIMTIDEINTINKNNMSYNDTCISNKDMFKSESNKTLDDLEKQYIR 606 Query: 476 HVIAICRQAKSLSAAGRQLFDVSR 499 H+++ C + +A ++ ++SR Sbjct: 607 HIVSRCNGEITKAA---KILNISR 627 >UniRef50_A8USY5 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8USY5_9AQUI Length = 349 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 103/284 (36%), Positives = 146/284 (51%), Gaps = 25/284 (8%) Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHF-------NRMIEQIEKVAIKSRAPILLNGPT 217 + IA R EE +KS + N F R+ + I + A + P+L+ G T Sbjct: 21 DVIAGRLPEE-------VKSKVCEENTDFVGSCERMTRVFDLIRRFA-PTDYPVLILGET 72 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK AR I E R + AF+ +NC + G+ + LFG+ KGAFTGA + G Sbjct: 73 GTGKELTARAIHEKSPRREK---AFIAINCGAIPGELLEAELFGYEKGAFTGAHRRKPGK 129 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 + ANGG LFLDEIGEL + Q LL+ +E+ TF G + + +D +LIA T DLR+L Sbjct: 130 IEQANGGTLFLDEIGELPLELQVKLLRFLEDYTFSRVGGNETIKADVRLIAATNGDLREL 189 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 V +GKFREDLY R+ + + LP LR R ED Y +E+ S+ T+ Sbjct: 190 VRKGKFREDLYYRLKVLSIELPPLRDRGEDKVLMAKYFLEKFKREQEKSIEGFTDE---- 245 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 A +W GN REL +V + A T R +D V+ +++ Sbjct: 246 -AIELIENYSWPGNVREL-INVMKKAVVMTDKRF-IDAVDLDVD 286 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 136/246 (55%), Gaps = 14/246 (5%) Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 ++P R I+ KV ++ +L+ G +G GK A+ I E +A F+ +NC Sbjct: 156 KSPVIQRTIQLARKVC-SVKSTVLILGESGVGKEVFAKAIHEASEAA---KAPFISINCG 211 Query: 249 TLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 + S LFG+ +GAF+GA + ++G + A GG LFLDEIGE+ D Q LL+ ++ Sbjct: 212 AIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQ 271 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E+ +Y G +++++ DF++IA T RDL++ + +G FREDLY R+N+ + +P LR+R+ED Sbjct: 272 ERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERRED 331 Query: 368 IEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATS-PQATWRGNFRELSASVTRMATF 425 I +E S D S+ +N R + W GN REL V R+ F Sbjct: 332 I-------IELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVF 384 Query: 426 ATSGRI 431 AT G I Sbjct: 385 ATDGII 390 >UniRef50_C9RLJ7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLJ7_FIBSS Length = 455 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/345 (33%), Positives = 166/345 (48%), Gaps = 44/345 (12%) Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 H + +E+ AI P+L+ G +G GK +AR I + FV VNC+ + Sbjct: 144 HLRKKVER----AILHTGPVLIQGESGVGKDLVARAIACVYDK-------FVTVNCSAIP 192 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 S LFGH +GAFTGA+ R GL ANGG +FLDEIG++ Q LL+ I+ Sbjct: 193 ESLFESELFGHTRGAFTGAQNERIGLFEDANGGAIFLDEIGDMPLHAQVKLLRVIQNHEI 252 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 P G+++ D ++IA T RDLR+ + E +FREDLY R+N+ L LR R+EDIE Sbjct: 253 RPIGANKTRHIDVRIIAATNRDLREEIREKRFREDLYYRLNVIPMQLSPLRDRKEDIEDL 312 Query: 372 LDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 +Y + ++A G+ + E A W GN REL + R F G + Sbjct: 313 ANYFIRQYAP-AGEPYTLSPE------ALLKLQNHNWPGNIRELENVIQRALCFTDPGIL 365 Query: 432 T---LDVVEDEINRLRYNWQESR-PSALTALLGA-EAENIDLFDRMQL----EHVIAICR 482 + L + ED N +R SA TA + A A N + F +QL E + A R Sbjct: 366 SAEDLQIDEDS------NDSAARFSSADTAAIKAFNASNYEEFRDLQLDEEREFLKATIR 419 Query: 483 QAK-SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 S+S A +L R + + L L R GL+ + VQ Sbjct: 420 NCDGSVSLAAERL----RMNRTA------LYNRLTRLGLSVKNVQ 454 >UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB08_PLALI Length = 1098 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/328 (34%), Positives = 162/328 (49%), Gaps = 42/328 (12%) Query: 160 DLSRYN----AIASRFAEERQQTLDFLKSGIATRNPH-------FNR---------MIEQ 199 DLSR N R +++QQ L ++ P FNR ++E Sbjct: 637 DLSRLNEELRLKVDRIEQQKQQILMLQAEINESQEPESPAPVTEFNRGMIRGSSQALMEV 696 Query: 200 IEKV--AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 +E V A S + +L+ G +G GK LA+ I R G V V+CA L S Sbjct: 697 LEVVRKAAASDSSVLITGESGTGKELLAQAIHANSPRR---DGPLVIVHCAALSTGLLES 753 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGHVKG+FTGA + G ANGG LFLDEIGE+ + Q LL+ ++++TF GS Sbjct: 754 ELFGHVKGSFTGAYADKPGRFELANGGTLFLDEIGEIPLETQVKLLRVLQQRTFERVGSS 813 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + D +++A T ++L Q + + +FREDLY R+N+ LP LR+R++D+ YE+ Sbjct: 814 ETLRCDVRVVAATHKNLEQAIRDSRFREDLYYRLNVVHIALPALRERKDDL-----YELF 868 Query: 378 RH-----ASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 RH A+ TG V R + A A LA+ W GN REL + R + S + Sbjct: 869 RHFLKQAANKTGKRVFRIDESALAALLAY------QWPGNIRELENVIERAVVLSESNTV 922 Query: 432 TLDVVEDEINRLRYNWQESRPSALTALL 459 TL + + RL + SA+ L+ Sbjct: 923 TLADLPPALRRLETSAIRRMESAMQPLV 950 >UniRef50_Q1D3M5 Sigma-54 dependent DNA-binding response regulator n=5 Tax=Cystobacterineae RepID=Q1D3M5_MYXXD Length = 457 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 135/236 (57%), Gaps = 12/236 (5%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IE+VA S AP+L+ G +G+GK +AR L + R +G FV VNC L S L Sbjct: 159 IERVAW-SGAPVLVRGESGSGKELVAR-ALHFEGTRR--AGPFVAVNCTALPHALLESEL 214 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGHVKGAFTGA +R GL A+GG LFLDEIG++ + QA LL+ +E+ G+D Sbjct: 215 FGHVKGAFTGATTARRGLFVEADGGTLFLDEIGDMAPELQARLLRVLEDGEVRAVGADGS 274 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D +++A T +DL V EG+FR D++ R+N+ T LP LR+R+EDI +++ +++ Sbjct: 275 RTVDVRVVAATHQDLETRVKEGRFRADVFYRLNVVTLRLPPLRERREDIPALIEHFLQQA 334 Query: 380 ASLTGDSV--RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + SV RF+ E A A W GN REL V R+ ++ + L Sbjct: 335 KARNPRSVVQRFSPETLAALGAL------PWAGNVRELENLVQRLVVLGSTEVVDL 384 >UniRef50_C6XRL0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Alphaproteobacteria RepID=C6XRL0_HIRBI Length = 498 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 125/227 (55%), Gaps = 8/227 (3%) Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R + ++ + A KS PIL+ G +G GK ++ I + A + F+ VNC + + Sbjct: 158 RQVVRLGQRAAKSNIPILITGESGVGKEVASQCI---QSASERAGKPFITVNCGAIPENL 214 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KGAFTGA E + G A+GG LFLDE+GEL D Q LL+ ++E Sbjct: 215 VESILFGHEKGAFTGAHEKKLGKFAEADGGTLFLDEVGELPLDMQVKLLRVLQEGEVDAV 274 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 GS + D ++I+ T RDL Q V+EG+FREDLY R+N++ +P LR R+ED+ +D+ Sbjct: 275 GSRKPTKVDVRIISATNRDLAQAVSEGRFREDLYYRLNVFPIEMPSLRDRKEDLPALVDH 334 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 + R + G S+ + +A W GN R+L S+ R Sbjct: 335 FIRRFNAQEGMSITGASLETMGMIA-----AHDWPGNVRQLENSIFR 376 >UniRef50_Q2LRH6 Transcriptional regulator with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRH6_SYNAS Length = 592 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 157/307 (51%), Gaps = 14/307 (4%) Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTL--DFLKSGIATRNPHFNR 195 Q + R R E+ + L++ ++SR E + L D + + T +P R Sbjct: 225 QGNILRMVTNARDMSEIINLQEQLAQSREVSSRLQTEFNRMLEDDLRANEMITESPTMYR 284 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 +IE ++A S +L+ G +G GK LA+ I + R GAF++VNC + Sbjct: 285 IIEMSRRIA-GSEVTVLIQGESGVGKEVLAKLIHVWSKRR----GAFIKVNCGAIPQHLL 339 Query: 256 MSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFG+ +GAFTGA RE + G+ A G LFLDEI +L D Q L+ ++++ F Sbjct: 340 ESELFGYNRGAFTGANREGKPGIFELAAEGTLFLDEIEDLPLDLQVKFLQVVQDRAFIRL 399 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G R + D + IA + R+L +LVAE KFREDL+ R+N+ T+P LRQR+ED+ +++ Sbjct: 400 GGTRVIKLDVRFIAASNRELNKLVAERKFREDLFYRLNVVPITIPPLRQRKEDVPLLVNH 459 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + R+ + ++ E A + W GN REL + R+ + I ++ Sbjct: 460 FLNRY------NAKYGVEKTMAPALLSNFMNYPWPGNIRELKNMIERLVITCSGNIIDVE 513 Query: 435 VVEDEIN 441 + ++N Sbjct: 514 AMGTKLN 520 >UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gammaproteobacteria RepID=A0KWT7_SHESA Length = 500 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 135/496 (27%), Positives = 227/496 (45%), Gaps = 46/496 (9%) Query: 42 DRLELLHDARSR--SLFETLKRDIASVS--PETEVVSVEIELHNPWDFEEVYACLHDFAR 97 D++ +L + + S FE + +V+ P ++ V+ + +P D+ H A+ Sbjct: 36 DKIVILSNDKEETWSRFEAFLKKSMAVNGRPYNDIKIVKAHIESPIDY-------HTIAK 88 Query: 98 GYE-----FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPG 152 E E + I++T+GT L+ + + + +Q++P + P Sbjct: 89 ETEKWITKLSEEADTLSINLTSGTPAMTALSVLIGKGKA-NTKFLQATPTNELLHVEIP- 146 Query: 153 EVTIIDLDLSRYNAIASR---FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 ID S Y AS+ + L+ S I ++ + + ++VA S Sbjct: 147 ----IDFG-SEYLRSASKNIAYLATSHPKLESAFSVITAKSLVMQDTVSKAKRVA-ASEV 200 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 P+L+ G TG GK +A+ I +A + VNC L + STLFGH KGAFTG Sbjct: 201 PVLILGETGTGKEVMAQAI---HRASLRAGQPLKIVNCGALAPNLVDSTLFGHKKGAFTG 257 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + GL AN G LFLDE+GEL D Q LL+A+++ G + ++ D ++IA Sbjct: 258 ADKDYPGLFEQANNGTLFLDEVGELPLDVQVKLLRALQQGEVTRLGDTKTINVDVRVIAA 317 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER-HASLTGDSVR 388 T +DL +LVA GKFREDL+ R+ + +P LR+RQEDI + V++ + S + Sbjct: 318 THQDLNKLVANGKFREDLFYRLAVGVIRIPSLRERQEDIPLIVGQLVDQINHSASKHPQY 377 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE-DEINRLRYNW 447 + + + F +S W GN R+L +++ R F S +D E + R Sbjct: 378 ISKKISEKGIKFLSS--QYWPGNIRDLWSTLNR--AFLWSDTSIMDEYELSQAMLTRSQV 433 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 E P +LT + + + L D +Q +V+A + + ++ Q+ + D Sbjct: 434 VEDVPISLT--FNDKVDIVQLTDNLQKNYVVAALKASGNVKKHATQML--------GLKD 483 Query: 508 ADRLRKYLARFGLTWE 523 L ++ R G+ E Sbjct: 484 HQTLTNWMKRLGIATE 499 >UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=70 Tax=Bacillus RepID=B9J2Z6_BACCQ Length = 616 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/322 (30%), Positives = 166/322 (51%), Gaps = 31/322 (9%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ + F +E+I+ V+ + A + + G TG GK ++AR I E + +G F+ Sbjct: 307 GVIGTSSAFQHTLEEIKLVS-PTDASVYVCGETGVGKEYVARAIHENSPRK---NGPFIA 362 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VNC +L + S LFG+ +GAFTGAR + +G A+GG +FLDEIGE+ + Q LL Sbjct: 363 VNCGSLPKELMESELFGYAEGAFTGARRQGYKGKFEQADGGTIFLDEIGEVPPEMQVALL 422 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+T P GS +++ + ++I T +DL +LV EGKFR+DLY R++++ +P L + Sbjct: 423 RVLQERTVNPIGSSKEIPVNIRIITATHKDLLRLVEEGKFRQDLYYRLHVYPLYVPSLIE 482 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW-LAFATS-----PQATWRGNFRELSA 417 R+EDI Y ++ R+ W + F S Q TW GN REL Sbjct: 483 RKEDI----PYFIKHFCK------------RKNWNVVFPKSICNQFSQHTWPGNIRELLN 526 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHV 477 + R+ + GR ++ E +I+ L ++P + ++ +++Q + + Sbjct: 527 VLERIYIL-SQGR---EICEKQISFLLQTMMGNQPHFELQAENKTEKTLNFREKIQRDSM 582 Query: 478 IAICRQAKSLSAAGRQLFDVSR 499 I + + +L DV R Sbjct: 583 IEALEKTNGNVSLAAKLLDVPR 604 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/229 (39%), Positives = 127/229 (55%), Gaps = 8/229 (3%) Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 +SR+ +L+ G TG GK +AR I AR ++ VNCA L D S LFGHVKG Sbjct: 163 ESRSTVLIRGETGTGKELVARAI-HFNSARAL--KPYLPVNCAALNEDLMASELFGHVKG 219 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA + GL +A+GG LFLDEIG++G Q L+A+E+ P GS ++ + Sbjct: 220 AFTGAVADKRGLFEAADGGTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVR 279 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T ++L +V +G FR+DLY R+N+ T LP LRQR+EDI + + ++A+ Sbjct: 280 IIAATNKNLEAMVEQGGFRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNK 339 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++R A A +W GN REL + R F + IT D Sbjct: 340 NIR-----GIAPRALRLLENYSWPGNVRELENIIERATLFELTQEITPD 383 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 95/281 (33%), Positives = 149/281 (53%), Gaps = 16/281 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I + R++E ++++A ++ +LL G +G GK +AR I + +Q FV + Sbjct: 123 IVAESREMRRILEIVKEIA-RTDITVLLTGESGVGKEVIARYIHKHSPRSNQ---PFVAI 178 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + LFGH KGAFTGA E + G AN G + LDEI E+ QA LL+ Sbjct: 179 NCAAITETLLEAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQAKLLRV 238 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 I+EK G + + D ++IA T +DL + V +G FREDL+ RIN++ +P LR+R Sbjct: 239 IQEKEIDRVGGTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPPLRERS 298 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 +DI P ++ ++R ++ + + ++ L + +W+GN REL + R A Sbjct: 299 DDIIPLAEFFLKRLSNKMSKNFTITEDMKKFLL------KKSWQGNVRELENFIYRSAVL 352 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 + G + L EDEIN ++E +P L AE E I Sbjct: 353 SQDGILRLH--EDEINL----FEEEKPVKAGKLKDAERELI 387 >UniRef50_C6INB6 Two-component system response regulator n=4 Tax=Bacteroides RepID=C6INB6_9BACE Length = 438 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 19/242 (7%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M QI VA +LL G +G GK +AR + E Q+R + + ++ V+C ++ + A Sbjct: 148 MYRQIGLVA-APEISVLLRGASGTGKEHIARELHE--QSRRK-NKPYITVDCGSILEELA 203 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S FGH KGAFTGA + GL + A+ G LFLDEIG L Q +LL+A++EK + P G Sbjct: 204 ASEFFGHRKGAFTGADSDKTGLFQEADSGTLFLDEIGNLSYKTQMLLLRALQEKRYKPVG 263 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S ++ D +L+A T +L + ++EG+FREDL+ R+N +T +P L + EDI P + Sbjct: 264 STKERCFDIRLLAATNENLEKAISEGRFREDLFHRLNEFTIWVPRLSECHEDILPLAKFF 323 Query: 376 VERHASLTGDSVRFNTEARRAW-----LAFATSPQATWRGNFRELSASVTRMATFATSGR 430 ++ RF+ E R A LA AT Q W GN REL V R A G Sbjct: 324 LK----------RFSKEYRLAVQGFDRLAVATMEQYGWPGNIRELKNCVRRAMLLAGGGW 373 Query: 431 IT 432 IT Sbjct: 374 IT 375 >UniRef50_B5YG95 FrgC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YG95_THEYD Length = 430 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 88/239 (36%), Positives = 138/239 (57%), Gaps = 10/239 (4%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I++VA K+ ++L G TG GKS +A+ I + + GAFVE+NCA++ S L Sbjct: 152 IKEVA-KTDTTLILYGETGTGKSAIAKAIHIMSAKK----GAFVEINCASIPESLIESEL 206 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FG+ KGAF+GA + + G + A+ G LFLDEIGEL A+ Q LK +++K+F G Sbjct: 207 FGYEKGAFSGAIKQKPGKIELAHNGTLFLDEIGELTANVQTKFLKVLQDKSFERLGGLEV 266 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + ++ + I T +DL+Q+V EGKFREDLY R+N++ T+P LR+R+ I +Y +ER Sbjct: 267 IKTNARFITATNKDLKQMVREGKFREDLYFRLNVFPITIPPLRERRHHIVRIAEYLIERI 326 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 ++ G V+ + + + T + GN REL + R + S I + + E+ Sbjct: 327 SAKLGKPVK-----KLSKDSIETIINYQFPGNIRELENILERSIIMSNSEEIEVKIEEN 380 >UniRef50_A9GME2 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9GME2_SORC5 Length = 457 Score = 149 bits (377), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/255 (36%), Positives = 139/255 (54%), Gaps = 11/255 (4%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 F SG+ R+ +I + +VA S A +L++GP+G+GK +AR + + R + Sbjct: 140 FSISGMIGRSRAIEEVIALVRRVA-DSPATVLVSGPSGSGKEIVARALHGESRRRGR--- 195 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 FV VNCA + + LFG KGA+T AR R G+ + A+GG LFLDE+ EL QA Sbjct: 196 KFVAVNCAAIPEGLIEAELFGVRKGAYTDARSDRPGMFQEADGGTLFLDEVSELAPPLQA 255 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+A++E+ P GS D +++A T DLR VAE FREDL+ R+ + +P Sbjct: 256 KLLRALQEREVRPVGSVTSEPIDVRVVAATNCDLRAAVAERAFREDLFYRLAVLEIAIPP 315 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASV 419 L+ R +DI P ++ + R A+ G + F+ A + LA+ W GN REL ++ Sbjct: 316 LKHRTDDILPLAEHFLARAATNAGKPIAGFSGAAVKRLLAY------DWPGNVRELENAI 369 Query: 420 TRMATFATSGRITLD 434 R A GRI+ D Sbjct: 370 ERAAALCDGGRISPD 384 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/321 (33%), Positives = 157/321 (48%), Gaps = 22/321 (6%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA-- 241 +GI + ++ +VA S A ILL G +G+GK +A+ I RH A Sbjct: 134 TGIVAESLAMRSVLRDAYRVA-PSDATILLTGESGSGKEIVAQFI-----HRHSARSAKP 187 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 V VNCA + S LFGH KGAFTGA R+G R A+ G LFLDEIG++ + Q Sbjct: 188 LVPVNCAAIAPTLLASELFGHEKGAFTGAVTKRKGYFREAHEGTLFLDEIGDMPLELQPS 247 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+A E P GSD++ D +LIA T DL VAEG+FR+DLY R+N+ T +P L Sbjct: 248 LLRATETGRITPVGSDKETVIDCRLIAATNHDLETDVAEGRFRQDLYYRLNVITIDIPPL 307 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARR-AWLAFATSPQATWRGNFRELSASVT 420 R+R EDI P + + TEARR + A T W GN REL+ ++ Sbjct: 308 RERPEDIPPLARLFLNKD----------KTEARRLSRAAMQTLISHPWPGNVRELANAMA 357 Query: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 + + + I + E +R + ++ P + + ++ ++E V A Sbjct: 358 HVRLLSQTDVI---LPEHLPPAVRKSAGKAAPESRIPVEQDAPAQTKTLEQHEIEAVTAA 414 Query: 481 CRQAKSLSAAGRQLFDVSRQG 501 + K QL ++R+G Sbjct: 415 LKHTKGNRTHAAQLLGITRRG 435 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/281 (34%), Positives = 144/281 (51%), Gaps = 21/281 (7%) Query: 156 IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 I ++D R R E +Q F + I + + + KVA ++A +LL G Sbjct: 214 IENVDKVRLETENRRLKSELKQR--FRPANIIGNSKPMQEVYAMVHKVA-STKATVLLLG 270 Query: 216 PTGAGKSFLARRILELKQARHQFS----GAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 +G GK +A A H S G F++ NCA L A S LFGH +GAFT A Sbjct: 271 ESGVGKELVA-------SALHYNSPVADGPFIKANCAALPEALAESELFGHERGAFTSAI 323 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 + +G A+GG +FLDE+GEL QA LL+ ++E+TF G + V D ++IA T Sbjct: 324 ATHKGYFEQASGGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATN 383 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFN 390 R+L ++VAEG FREDL+ R+N++ T+P LR R D+ D+ V +++ G + R + Sbjct: 384 RNLAEMVAEGTFREDLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRIS 443 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 T A +++ W GN REL + R A G I Sbjct: 444 TPAINMLMSYH------WPGNVRELENVIERSVILAEEGVI 478 >UniRef50_C0QE85 FhlA n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QE85_DESAH Length = 492 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 97/255 (38%), Positives = 134/255 (52%), Gaps = 24/255 (9%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 +NR+ + VA S+ P+L+ G TG GK +AR + L + G F+ VNC+ + Sbjct: 187 WNRVKDAAAMVA-ASQTPVLIQGETGTGKEVVARAVHRLSDRK---GGPFIPVNCSAISA 242 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 A S LFGH KG FTGA SR+G A+GG LFLDEIG+L + Q LL+A++EK Sbjct: 243 GVAESELFGHEKGGFTGAVSSRKGRFELADGGTLFLDEIGDLPLEIQPKLLRALQEKKLE 302 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 G + +S D ++IA + DL V E +FREDLY R+N++ LP LR+R DI Sbjct: 303 RIGGESTISVDVRIIAASHVDLYTAVRENRFREDLYYRLNVFPIRLPPLRERGSDILILA 362 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSP-------QATWRGNFRELSASVTRMATF 425 +Y TG AR A +P QA W GN R+L ++ R A Sbjct: 363 EY-------FTG-----QIRARAGHKDLALAPESVDILLQADWPGNVRQLQNTLERAAIL 410 Query: 426 ATSGRITLD-VVEDE 439 + G I + +V DE Sbjct: 411 SRGGVIRAEHIVADE 425 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 105/295 (35%), Positives = 147/295 (49%), Gaps = 17/295 (5%) Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 + P K E+ R E + +DL R N + +E Q F + I ++ + + Sbjct: 127 TKPFKNEEIRLVVENALERMDLRRENL---QLKKELGQRFSF--ANIIGKSKVMQGVYDL 181 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IEKV+ S+ +L+ G +G GK +AR I RH FV + C + + S L Sbjct: 182 IEKVS-ASKVNVLITGESGTGKELVARAI-HYNSDRH--DRPFVAIYCGAIPENLLESEL 237 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA + ++GL A+GG LFLDEI EL Q LL+ I+E F G R Sbjct: 238 FGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRD 297 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D +L+A T +DL Q V E +FREDLY R+N+ LP LR R+EDI + + +++ Sbjct: 298 LKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKL 357 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 G S R +L + W GN REL +V R G IT D Sbjct: 358 TP--GFSTTIPDGVMRRFLDYH------WPGNIRELENTVERCVVLGGKGEITED 404 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 135/258 (52%), Gaps = 18/258 (6%) Query: 183 KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS--- 239 +S I +P R+ E I K+A S A +L+ G TG GK +A+ I H +S Sbjct: 199 QSEIIGYSPPIKRVSEIIAKIA-PSSATVLIRGETGTGKELIAKAI-------HNYSPRK 250 Query: 240 -GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 ++++NCA + + S LFGH KGAFT ARE+R+G A+GG LFLDE+G+L Sbjct: 251 EKPYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPL 310 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 QA +L+ ++E+ F G + + D +++A T RDL ++V G FREDL+ R+N+ Sbjct: 311 QAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFS 370 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 P LR R +D+ Y +ER + +A + W GN REL S Sbjct: 371 PPLRDRGDDVILLSRYFLERFCKRHAKELHLTPKAEELLKHY------DWPGNIRELENS 424 Query: 419 VTRMATFATSGRITLDVV 436 + R+ A S I +VV Sbjct: 425 IERLVLLAPSESIDEEVV 442 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 9/232 (3%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I+K+A K+ A L+ G +G GK +A I K R + F++ NCA L + S L Sbjct: 251 IDKIA-KTSATTLVLGESGVGKELVASAI-HFKSRRAE--KPFIKFNCAALPENIVESEL 306 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA +R G AN G +FLDE+GEL QA LL+ ++EK F G + Sbjct: 307 FGHEKGAFTGALATRHGRFEMANNGTIFLDEVGELSLSVQAKLLRILQEKEFERVGGSKT 366 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T R+L +L+ +G+FREDL+ R+N++ T+P LR+R+ DI DY VE++ Sbjct: 367 IKVDVRVIAATNRNLEELIRQGQFREDLFYRLNIFPITVPPLRERKTDILLLADYFVEKY 426 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 VR R + A + W GN REL + R + I Sbjct: 427 NKANQKGVR-----RISTTAIDMLMRYHWPGNVRELQNCIERAVILSEDNVI 473 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 89/282 (31%), Positives = 147/282 (52%), Gaps = 20/282 (7%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + YN + + R + + + +A RN +I A KS + +L+ G +G G Sbjct: 263 IKNYNKMNKDY---RIKLENIIGESVAIRNSKKEALI------ASKSTSTVLITGESGTG 313 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLR 279 K AR I ++ F+ VNCA + + S LFG+ +GAFTGA++ + G+ Sbjct: 314 KELFARAI---HNHSNRVDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMFE 370 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A+ G +FLDEIG++ Q+ LL+ ++EK GS VS D ++IA T +DL ++V Sbjct: 371 VAHKGSIFLDEIGDMSLHLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQ 430 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWL 398 G FREDLY R+N+ LP LR+R+EDI + + V+ ++ L + + ++ A + Sbjct: 431 NGTFREDLYYRLNVIPIKLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDSRVVDAMM 490 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 + W GN REL + ++S IT++V+ +I Sbjct: 491 EYK------WPGNIRELQNIIEYSVNMSSSSIITMNVIPQKI 526 >UniRef50_C8X096 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X096_DESRD Length = 473 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 132/234 (56%), Gaps = 12/234 (5%) Query: 196 MIEQIEKVAI--KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 +++ ++ +A+ + +P+L+ G TG GK AR I ++ G FV V+C L + Sbjct: 143 LVQCLDVIAMSANTESPVLIAGETGTGKELFARAI---HVNSNRAEGPFVVVDCGALTEN 199 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 STLFGH +GAFTGA ++++GL++ A+GG LFLDE+GEL Q L+ ++EK F P Sbjct: 200 LVESTLFGHERGAFTGADKAQKGLIQVAHGGTLFLDEVGELPLGIQKTFLRVLQEKRFRP 259 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G R+ SDF+L+A T RDL QLV G FR+DL R+ LP LR+ + DIE Sbjct: 260 VGGTREAQSDFRLVAATNRDLDQLVTAGGFRQDLVYRLKSIQVDLPPLRRIKGDIEMLCC 319 Query: 374 YEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 + V ++ + G S + ++ E A L Q W GN REL V + A Sbjct: 320 HYVAKYCNRMGISKKGYSAEFLDALL------QYEWPGNVRELVNCVAHCLSSA 367 >UniRef50_Q53206 Nif-specific regulatory protein n=5 Tax=Alphaproteobacteria RepID=NIFA_RHISN Length = 594 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 99/251 (39%), Positives = 128/251 (50%), Gaps = 18/251 (7%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I +P +++E + KV ++ + +LL G +G GK F A+ I EL R + FV++ Sbjct: 252 IVGESPALRQVVESV-KVVAQTNSAVLLRGESGTGKEFFAKAIHELSPRRKK---PFVKL 307 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA L S LFGH KGAFTGA R G A+GG L LDEIGE+ QA LL+ Sbjct: 308 NCAALSAGVLESELFGHEKGAFTGAISQRAGRFELADGGTLLLDEIGEISPAFQAKLLRV 367 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E G + + D +LI T +DL VAEG+FR DLY RIN+ LP LR+R Sbjct: 368 LQEGELERVGGTKTLKVDVRLICATNKDLETAVAEGEFRADLYYRINVVPLFLPPLRERN 427 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAW----LAFATSPQATWRGNFRELSASVTR 421 DI R A + D RFN E R A + + GN REL V R Sbjct: 428 GDI--------PRLAKVFLD--RFNRENNRNLEFTPAALEILSRCKFPGNVRELENCVRR 477 Query: 422 MATFATSGRIT 432 AT A S I Sbjct: 478 TATLARSATIV 488 >UniRef50_D0XNN9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNN9_9CAUL Length = 465 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/248 (37%), Positives = 133/248 (53%), Gaps = 11/248 (4%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P +I+ ++VA +S A IL+ G +G GK +AR L + F+ VNCA Sbjct: 124 DPSMQAVIKLADQVA-RSEASILITGESGVGKEVMARY---LHTHSKRAERPFISVNCAA 179 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFGH KGAFTGA R G A+GG L LDEI E+ QA LL+AI+E+ Sbjct: 180 IPDNLLESELFGHEKGAFTGAVARRIGKFEEADGGTLLLDEISEMDTRLQAKLLRAIQER 239 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 G + V + ++IA + RDL + VAEG FREDL R+N+ LP LR+R D+ Sbjct: 240 IIDRVGGTKPVPVNIRIIATSNRDLAKAVAEGTFREDLLYRLNVVNLRLPALRERPGDVA 299 Query: 370 PNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 D+ V+++A+ G VR + +ARRA A W GN REL ++ R A Sbjct: 300 VLADHFVKKYAAANGVPVRPLSLDARRALAAH------RWPGNVRELENAMHRAVLLAVG 353 Query: 429 GRITLDVV 436 I + + Sbjct: 354 PEIDAEAI 361 >UniRef50_Q5WLY7 Transcriptional regulator n=4 Tax=Bacillaceae RepID=Q5WLY7_BACSK Length = 483 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/248 (37%), Positives = 136/248 (54%), Gaps = 13/248 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I N ++I+ KVA K +L+ G TG GK AR I QA + +F+ V Sbjct: 140 IVGHNEAMRQVIQTAYKVAGK-HVNVLIGGETGTGKEVFARFI---HQASQRCYESFIGV 195 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC L S LFGH KGAFTGA + R+GL A+ G LFLDEI E Q LL+ Sbjct: 196 NCGALSESLLESELFGHEKGAFTGATQKRKGLFEIASKGTLFLDEIAEASTSIQVKLLRV 255 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +E + F G ++ + ++ +L+A T DL++ V + KFREDL+ R+N+ +P LR R+ Sbjct: 256 LETREFMRVGGEQPLHTNARLLAATNEDLQEAVQQKKFREDLFYRLNVVHLEIPPLRDRK 315 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI +++ ++R+ S+ V F+ A ++ W GN RELS +TR+ TF Sbjct: 316 EDIPLLIEHFLKRYPSM---EVSFSDGALEMLQSYE------WPGNIRELSNYITRIVTF 366 Query: 426 ATSGRITL 433 A SG + + Sbjct: 367 ADSGHVNI 374 >UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89NZ8_BRAJA Length = 688 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 156/316 (49%), Gaps = 16/316 (5%) Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 R + AS + + L K I + +++++E+ A+ R ILL G TG GK Sbjct: 344 RTHPAASEMSPTARTALMSAKEAIVGCSEALLDVVQKVERAAL-GRTAILLEGETGVGKE 402 Query: 223 FLARRI--LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLR 279 AR + LK + FV NC + + LFGH GA+TGA RE R G Sbjct: 403 LFARLVHAASLKTGKE----PFVAFNCGAVSKELLGGELFGHAPGAYTGATREGRPGRFE 458 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 ANGG+L LDEIGE+ D Q LL+ +EE+ Y G + D +L+A T R+L+Q VA Sbjct: 459 FANGGVLSLDEIGEMPMDLQPYLLRVLEERAVYRLGDSKARPVDVRLVASTNRNLKQEVA 518 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL-TGDSVRFNTEARRAWL 398 EG+FR+DLY RI + FT+P LR R D+E +D+ + A++ + +RF Sbjct: 519 EGRFRKDLYFRIGVVKFTIPPLRDRLGDVEILIDHFNRQFATIYSTQPLRFEAATMELLR 578 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITL-DVVEDEINRLRYNWQESRPSALTA 457 + +W GN REL + + +G +T D+ ED + + + Sbjct: 579 RY------SWPGNVRELRNLIENLVLMTITGIVTPRDLPEDFVEVAPAQPPSISVQSENS 632 Query: 458 LLGAEAENIDLFDRMQ 473 G+E++ I FD M+ Sbjct: 633 ATGSESDEIARFDEME 648 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 133/239 (55%), Gaps = 10/239 (4%) Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 + I+K+A+ + + +LL G +G GK+ +A+ I L + + + F+ VNCA + + Sbjct: 209 DTIQKIAM-TDSTVLLLGESGVGKTLIAKAIHTLSERKDK---PFISVNCAAIPETLLEA 264 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFG+ KGAFTGA S++G ANGG +FLDEIGEL Q+ LL+ I+EK G++ Sbjct: 265 ELFGYEKGAFTGAVHSKKGKFELANGGTIFLDEIGELPLQSQSKLLRVIQEKELEKLGAE 324 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + + + ++IA T +DL +VA G+FREDLY R+N+ +P LR+R+EDI + + ++ Sbjct: 325 KSIFVNVRVIASTNKDLASMVARGEFREDLYYRLNVIPIRVPALRERKEDIPLLVKHFLD 384 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 + + EA A + + W GN REL + R+ DV+ Sbjct: 385 KFNKHYKKHINIEKEAMEALVNY------NWPGNIRELENLIERLVVINNKDITKEDVL 437 >UniRef50_P54931 Nif-specific regulatory protein n=9 Tax=Alphaproteobacteria RepID=NIFA_RHIEC Length = 584 Score = 149 bits (376), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 104/271 (38%), Positives = 140/271 (51%), Gaps = 22/271 (8%) Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 IA R A R + GI +P +++E + VA ++ + +LL G +G GK F A+ Sbjct: 212 IAQRGAPGRHPPVKI--DGIIGDSPALQQVVETVSVVA-RTNSTVLLRGESGTGKEFFAQ 268 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I EL +++ FV++NCA L S LFGH KGAFTGA R G ANGG L Sbjct: 269 AIHELSPRKNK---PFVKLNCAALPEGVLESELFGHEKGAFTGAIAQRAGRFELANGGTL 325 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 LDEIGE+ QA LL+ ++E G + ++ D +LI T ++L VA +FR D Sbjct: 326 LLDEIGEISPAFQAKLLRVLQEGELERVGGTKTLAVDVRLICATNKNLEMAVANAEFRAD 385 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP-- 404 LY RI++ LP LR+R DI R A+ D RFN E +R L F++S Sbjct: 386 LYYRISVVPIVLPPLRERPGDI--------PRLANALLD--RFNKENQRE-LTFSSSAIE 434 Query: 405 ---QATWRGNFRELSASVTRMATFATSGRIT 432 Q + GN REL V R AT A S I Sbjct: 435 VMSQCYFPGNVRELENCVRRTATLARSSSIV 465 >UniRef50_Q1D5T0 Sigma-54 dependent DNA-binding reponse regulator n=9 Tax=Cystobacterineae RepID=Q1D5T0_MYXXD Length = 477 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 88/224 (39%), Positives = 126/224 (56%), Gaps = 10/224 (4%) Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK +A ++ +A + + F+ NCA L + A + LFGH +GAFTGA Sbjct: 173 VLITGESGTGKERVADALV---RASPRANRPFLRFNCAALTEELAEAELFGHARGAFTGA 229 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 +R GL R A+GG L LDE+GEL QA LL+ ++E P G DR V+ D ++IA T Sbjct: 230 HRARPGLFREADGGTLLLDEVGELAPTLQARLLRVLQEGEVRPVGEDRPVTVDVRIIAAT 289 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 RDLR+L EG FREDLY R+N+ +P LR+R EDI ++R RF+ Sbjct: 290 HRDLRRLALEGAFREDLYYRLNVVQLRVPPLRERPEDIPVLARVFLDRFID------RFH 343 Query: 391 TEARRAWLAFATSPQA-TWRGNFRELSASVTRMATFATSGRITL 433 T + F +A W GN REL ++ + ++ GR+ L Sbjct: 344 TGPLKIPDGFFEQLRALPWPGNVRELENTLESLVALSSEGRLDL 387 >UniRef50_C6HYQ1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYQ1_9BACT Length = 474 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 27/280 (9%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 +GI T+NP ++ + K+A+ + +L+ G +G GK AR QA + G FV Sbjct: 151 AGIVTKNPRIEELLRMLRKIAVTDVS-VLITGESGTGKELFAR---ACHQASLRKEGPFV 206 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NC + + S LFGH KGAFTGA ESR G +A+ G LFLDE+ EL D Q LL Sbjct: 207 AINCGAIPENLMESELFGHEKGAFTGATESRGGKFEAADRGTLFLDEVAELPLDLQVKLL 266 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + +++K G D ++IA T + L +++A+G+FREDLY R+++ +F LP LR+ Sbjct: 267 RVLQDKVVERVGGRSGKKLDIRIIAATNQPLPEMMAQGRFREDLYYRLSVMSFVLPPLRE 326 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLA------FATSPQATWRGNFRELSA 417 R ED+ Y + RF TE ++ L A W GN RE+ Sbjct: 327 RGEDVTILARYFFD----------RFRTEYQKTQLVDFSSECLALIHSYDWPGNIREMEN 376 Query: 418 SVTRMATFATSGRIT---LDVVEDEINRLRYNWQESRPSA 454 + R A IT +D+ D LR E P++ Sbjct: 377 RIRRAVIVAVDRFITPADIDITRD----LRPPEPERSPAS 412 >UniRef50_C0Z7K7 Putative transcriptional regulator protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z7K7_BREBN Length = 455 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 128/240 (53%), Gaps = 13/240 (5%) Query: 197 IEQIEKVAIK---SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 +EQ+ +A K + ++L G +G GK LA+ I E + FV +NC + Sbjct: 151 MEQVAMLAKKLSQVESSMILLGESGVGKGVLAKYIHECSP---RVDKPFVHINCGAIPET 207 Query: 254 TAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFG+ KGAFTGA ++ + GL+ ANGG LFLDEIGE+ Q LL ++EKT Sbjct: 208 LLESELFGYEKGAFTGAFKDGKAGLIEKANGGTLFLDEIGEMSLSLQVKLLNVLQEKTIT 267 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P GS D +LI T ++LRQ+V EG+FREDLY RI++ +P LR+RQE+I Sbjct: 268 PVGSSVSRKVDVKLITATNKNLRQMVKEGRFREDLYYRIHVVPLEIPPLRERQEEI---- 323 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 V H L S ++ E + A + + W GN REL V R+ + IT Sbjct: 324 --PVLVHYFLNVFSQKYCLERQLADTCYRILSEYDWPGNVRELENVVERLVVTSHDVLIT 381 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 145/267 (54%), Gaps = 14/267 (5%) Query: 171 FAEERQQT---LDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 F EE Q+ D +K +A +P ++ ++I VA S + +L+ G +G GK +A Sbjct: 268 FQEELQKNRTAQDIMKDMVA-ESPQMKKLKDEISIVA-TSTSTVLITGESGTGKEGVAHA 325 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGML 286 I L R + G F++VNCA++ S +FG+V GAFTGA + + G + A+GG L Sbjct: 326 I-HLGSDRGK--GPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTL 382 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIGE+ QA LL+ ++++ GS + + +++A T + L +A+G+FR+D Sbjct: 383 FLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQD 442 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQA 406 LY R+N+ LP LR+R EDIEP + + + + +V T A AT Q Sbjct: 443 LYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPN-----AMATLLQY 497 Query: 407 TWRGNFRELSASVTRMATFATSGRITL 433 +W GN REL V R + SG I L Sbjct: 498 SWPGNIRELENVVERAVNYTRSGLIEL 524 >UniRef50_C6C6J7 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Dickeya RepID=C6C6J7_DICDC Length = 466 Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 95/248 (38%), Positives = 134/248 (54%), Gaps = 19/248 (7%) Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 +++ +E+VA+ + IL+ G G GKS LAR I +L R + + V VN + Sbjct: 162 QMQQLMRMVEQVAV-TDTNILILGENGTGKSLLARVIHQLSSRRDE---SLVSVNMGCIN 217 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 + S +FGHVKGAFT ARESR G A+ G LFLDEIG L +Q+ LL+ +EE+ F Sbjct: 218 ENLFESEMFGHVKGAFTDARESRVGRFELADKGTLFLDEIGNLPMTQQSKLLRILEERCF 277 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 GS R + + +++A T +L + VAEG FR+DLY R+N LP L +RQEDI P Sbjct: 278 ERVGSSRTLKTHCRIVAATNANLAERVAEGTFRQDLYYRLNTIELHLPSLAERQEDIVPL 337 Query: 372 LDYEVERHASLTGDSVRFNTEARRAWLAFATSPQAT-----WRGNFRELSASVTRMATFA 426 +ER+A ++N + A + S QA W GN RELS + R Sbjct: 338 TLNFIERYAR------KYN----KPVPALSPSGQAALFRYHWPGNVRELSHLLERAVLLC 387 Query: 427 TSGRITLD 434 + R+ D Sbjct: 388 AASRLNSD 395 >UniRef50_D2L101 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L101_9DELT Length = 466 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 164/343 (47%), Gaps = 29/343 (8%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ R+P ++ E I VA S +L+ G +G GK AR + L + + +G F+ Sbjct: 146 GLLGRSPAMVQVTEAIAAVA-GSDYTVLIRGESGTGKELAARAVHALSR---RAAGPFLS 201 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNC + S LFGHV+GAFTGA R GL SA GG++ LDEIG++ Q LL+ Sbjct: 202 VNCPAIPDQLLESELFGHVRGAFTGAERDRRGLFLSAEGGVIVLDEIGDIPMSVQTKLLR 261 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E+ P GS R + D +++A T +DL +A+ FREDLY R+N+ T LP LR+R Sbjct: 262 VLQEREIRPVGSSRSLPVDVRILAATNQDLEARIADKTFREDLYYRLNVLTVRLPPLRER 321 Query: 365 QEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 ++DI +ER TG + F+ E A A W GN REL V R+ Sbjct: 322 RDDIPLLATAFLERACRETGIGEKEFSPE------ALAGLAGRDWPGNVRELLNFVRRLT 375 Query: 424 TFATS---GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 F G L + N P+ L A+A +D F R +E +++ Sbjct: 376 VFCRGDVIGPSALQAADPGHNEPAETDDADLPA---PYLEAKARVVDAFTRRYVERLLSQ 432 Query: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 R +VS + S + L+K L R G+ E Sbjct: 433 TRG------------NVSEAARLSGLERVSLQKILRRLGIVAE 463 >UniRef50_Q2IK30 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Anaeromyxobacter RepID=Q2IK30_ANADE Length = 466 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 103/293 (35%), Positives = 152/293 (51%), Gaps = 18/293 (6%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATR----NPHFNRMIEQIEKVAIK 206 P + +L L+ A+ +R +R + L ++ I R + + +++ +VA + Sbjct: 99 PKPFDVDELALAIGRALEARLLRQRNRQLT-VEHAIGRRLVFESANMRQVLAATARVAAR 157 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 +L+ G TG GK + + L + + +G V NC+ + + A + LFGHV+GA Sbjct: 158 E-ITVLVRGETGTGKELIGTLLHALSK---RAAGPLVRFNCSAIPAELAEAELFGHVRGA 213 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA ++R G A+GG L LDE+GEL QA LL+ ++E P GS R D ++ Sbjct: 214 FTGAVQARPGFFAQADGGTLVLDEVGELPLGIQAKLLRTLQEGEIQPVGSGRVERVDVRI 273 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE-RHASLTGD 385 +A T RDLR V EG+FREDLY R+ + T+P LR R+EDI P L +E R+A Sbjct: 274 VACTHRDLRADVQEGRFREDLYYRLAVVELTVPPLRDRREDI-PALAHEFALRYAE---- 328 Query: 386 SVRFNTEARRAWLAFATS-PQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 RF +E R A +A W GN R+L V RM + G I D E Sbjct: 329 --RFGSEDVRLAPALVERLVKADWPGNVRQLENVVARMVALSGGGEIGPDAFE 379 >UniRef50_C3PZ45 Two-component system response regulator n=3 Tax=Bacteroides RepID=C3PZ45_9BACE Length = 433 Score = 149 bits (375), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 19/242 (7%) Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M QI VA S +LL G +G GK +AR EL + + +V V+C + + A Sbjct: 139 MYRQISLVA-ASDISVLLRGASGTGKEHIAR---ELHEQSRRKDRPYVTVDCGAIPEELA 194 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S FGH KG+FTGA + GLL+ A+GG LFLDEIG L Q +LL+A++EK + P G Sbjct: 195 ASEFFGHRKGSFTGADSDKTGLLQEADGGTLFLDEIGNLSYRTQMLLLRALQEKCYKPVG 254 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S ++ D +L+A T +L + ++EG+FREDL+ R+N +T +P L + EDI P + Sbjct: 255 SMKERRFDIRLLAATNENLEKAISEGRFREDLFHRLNEFTIRVPLLSECPEDILPMARFF 314 Query: 376 VERHASLTGDSVRFNTEARRAW-----LAFATSPQATWRGNFRELSASVTRMATFATSGR 430 +E RF+ E R + LA A + W GN REL +V AT+G Sbjct: 315 LE----------RFSKEHRISLQGFDCLATAAMREYRWPGNIRELRNAVRSAMLLATNGW 364 Query: 431 IT 432 IT Sbjct: 365 IT 366 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 91/262 (34%), Positives = 142/262 (54%), Gaps = 22/262 (8%) Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 ++P R I+ KV ++ +L+ G +G GK A+ I E A + F+ +NC Sbjct: 240 KSPVIQRTIQLARKVC-SVKSTVLILGESGVGKEVFAKAIHE---ASETANAPFISINCG 295 Query: 249 TLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 + S LFG+ +GAF+GA + ++G + A GG LFLDEIGE+ D Q LL+ ++ Sbjct: 296 AIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQ 355 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E+ +Y G +++++ DF++IA T RDL++ + +G FREDLY R+N+ + +P LR+R+ED Sbjct: 356 ERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERRED 415 Query: 368 IEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATS-PQATWRGNFRELSASVTRMATF 425 I +E + D S+ +N R + W GN REL V R+ F Sbjct: 416 I-------IELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIRELRNVVERLVVF 468 Query: 426 ATSGRI--------TLDVVEDE 439 AT G I T D +E+E Sbjct: 469 ATDGIIKQEYLPFHTNDTLENE 490 >UniRef50_O31551 Acetoin dehydrogenase operon transcriptional activator acoR n=4 Tax=Bacillus RepID=ACOR_BACSU Length = 605 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 158/328 (48%), Gaps = 18/328 (5%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 + E+++ F +G+ ++ M+ +E+ A + A + L+G TG GK AR + E Sbjct: 280 YLSEQKKKKAFRFNGVIGQSGRSQAMLMHLERAA-ATDASVCLSGETGTGKEVAARALHE 338 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLD 289 + RH G FV VNC + D S LFG+ +GAFTGA R +G + AN G LFLD Sbjct: 339 NSERRH---GPFVAVNCGAIPSDLIESELFGYAEGAFTGAKRNGYKGAFQKANQGTLFLD 395 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGE+ Q LL+ ++E+ P G +++ D ++IA T DLR+L GK REDL+ Sbjct: 396 EIGEISHSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHCDLRELAENGKIREDLFY 455 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWR 409 R++++ LP LR R EDI P+L ++ GD + W W Sbjct: 456 RLHVYPIELPPLRDRTEDI-PDLFEYYKQKNHWPGDLPSDFCNVLKQW---------KWP 505 Query: 410 GNFRELSASVTRMATFATSGRITLDVVED--EINRLRYNWQESRPSALTALLGAEAENID 467 GN REL R++ GR+ + + E L + E +P+A L E D Sbjct: 506 GNIRELFNVFERLSIRFPDGRLRDESLPALLEAAGLPASSAEKKPAAAGVLTFREQIQKD 565 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + + LE QA +S R F Sbjct: 566 MMIKA-LESAKGNVSQAAKISGIPRSTF 592 >UniRef50_B7VNT5 Sigma-54 dependent response regulator n=10 Tax=Vibrionaceae RepID=B7VNT5_VIBSL Length = 509 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 86/215 (40%), Positives = 124/215 (57%), Gaps = 9/215 (4%) Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 SRA +L+ G +G GK +AR + E + +G FV +NC + + S LFGH GA Sbjct: 203 SRASVLIEGESGTGKELVARGVHEASKR----TGPFVPINCGAIAPELLESELFGHTSGA 258 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA+++REGL R A+GG LFLDEIGE+ QA LL+ +E++T P GS+++++ D ++ Sbjct: 259 FTGAKKNREGLFRVASGGTLFLDEIGEMPLPMQAALLRVLEQRTIRPVGSEKEIAVDVRV 318 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 +A T R+L+Q V +G FR DL+ R+N+ + LR+R D+ + Y AS S Sbjct: 319 VAATNRNLQQEVEKGHFRRDLFYRLNVLKIDVVPLRERPSDLIELVPYFTRLLASEL--S 376 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 V A LA + W GN REL V R Sbjct: 377 VPVPNWAHEDILAMN---EYEWPGNIRELKNLVER 408 >UniRef50_B8FCF2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCF2_DESAA Length = 542 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 24/256 (9%) Query: 173 EERQQTLDFLKSG-------IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 E+R Q L LK+G I R+P +++E + ++A S + +L+ G +G GK +A Sbjct: 220 EKRDQELQRLKTGPEKNRHGIVFRSPEMGKIVE-LAEIAAPSNSTVLVQGESGTGKELVA 278 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 R I +A + FV +NCA + S LFGH+KG+FT AR ++GLL A G Sbjct: 279 RFI---HKASQRGDEPFVAINCAAIPHTLIESELFGHLKGSFTDARADKKGLLVEAGQGT 335 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 +F+DE+GELG + QA LL+A++++ P G + V ++IA +DLR++V G FR+ Sbjct: 336 IFMDEVGELGMEVQAKLLRALQQREVRPLGGLKTVPIQARIIAAANQDLREMVDRGAFRQ 395 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH--ASLTGDSVRFNTEARRAWLAFATS 403 DL+ R++++ +P LRQR+EDI + RH + L F E R A+ Sbjct: 396 DLFYRLSVFPLLIPPLRQRREDI-----LILARHFLSRLDPSHPGFTPEVVRRMQAYH-- 448 Query: 404 PQATWRGNFRELSASV 419 W GN REL V Sbjct: 449 ----WPGNIRELENCV 460 >UniRef50_A0NV29 LuxO repressor protein n=3 Tax=Rhodobacteraceae RepID=A0NV29_9RHOB Length = 497 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 93/266 (34%), Positives = 141/266 (53%), Gaps = 24/266 (9%) Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 +QI ++A S+AP+ + G +G GK A + +L + R S FV +NCA + D S Sbjct: 185 DQIARMA-PSQAPVFITGESGTGKELCAAAVHDLSERR---SNRFVTLNCAAIPRDLIES 240 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 +FG+V+GAFTGA ++REG ANGG LFLDEIGE+ Q+ LL+ ++ TF G Sbjct: 241 EIFGYVRGAFTGATDNREGAAEQANGGTLFLDEIGEMDLLLQSKLLRFLQTGTFQRLGDT 300 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 D ++I T R+ Q ++ G+FREDLY R+++ LP LR+R++DI P + +E Sbjct: 301 HTRKVDARIICATNRNPVQEISAGRFREDLYYRLHVLPIHLPPLRERRDDILPLAETFLE 360 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQA-----TWRGNFRELSASVTRMATFATSGRIT 432 R++ E RR + F +A W GN R+L ++ ++ +T Sbjct: 361 ----------RYSAEERRGFRGFDADAEARIISYPWPGNVRQLENTIRQIVVMNDGAAVT 410 Query: 433 LDVVEDEINRLRYNWQESRPSALTAL 458 D++ L Q SRP L L Sbjct: 411 YDMLP-----LVIRDQSSRPGTLIDL 431 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 85/222 (38%), Positives = 127/222 (57%), Gaps = 8/222 (3%) Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 + K+A IL+ G +G GK +A+ I Q+R Q FV +NC+ + + L Sbjct: 158 VAKIATSEATTILVQGESGTGKDLVAKAIH--YQSRRQ-EKPFVAINCSAIPETLMEAEL 214 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFT A+ ++GL +A+GG LFLDEIGEL QA LL+ +E++ G R Sbjct: 215 FGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRD 274 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA + RDL ++V +G FR+DLY R+ + + LP LR R+EDI P +++ +ER+ Sbjct: 275 MQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDRKEDILPLVEFFIERY 334 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 S+R T+ R L + W GN REL ++ R Sbjct: 335 NRKFKKSIRGVTDNTRRLLM-----KHDWPGNVRELKNAIER 371 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 139/268 (51%), Gaps = 21/268 (7%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 A +RQ + I + N++ + IEK A ++A I++ G +G GK LA Sbjct: 127 LALKRQLSQKLDNKKIVGLSEAMNKVFDTIEKAA-PTKANIMITGESGTGKGLLA----- 180 Query: 231 LKQARHQFS----GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 +A HQ S F+ +NCA + S LFG+ KGAFTGA ++ GL+ A+GG L Sbjct: 181 --EAVHQNSPRRDKPFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITMADGGTL 238 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIG++ Q+ +LK +E P G + + D ++I+ T +DL + E FRED Sbjct: 239 FLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIREKTFRED 298 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV--RFNTEARRAWLAFATSP 404 LY R+N+ +P LR+R+EDI P L + + D V F+ A +A +A+ Sbjct: 299 LYYRLNVIEIRMPALRERREDI-PLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMAYP--- 354 Query: 405 QATWRGNFRELSASVTRMATFATSGRIT 432 W GN REL V R FA +IT Sbjct: 355 ---WPGNVRELKNVVERAVIFAGGEQIT 379 >UniRef50_C7X3X5 Nitrogen regulation protein NR(I) n=24 Tax=Bacteroidales RepID=C7X3X5_9PORP Length = 460 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 94/250 (37%), Positives = 135/250 (54%), Gaps = 19/250 (7%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 F ++++QI VA + +L+ G G GK +A L + FV V+C +L Sbjct: 160 FQKIMQQIRLVA-PTDMSVLIFGENGTGKEHIAH---HLHDKSKRAGKPFVPVDCGSLSK 215 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 D A S FGHVKGAFTGA +++G A GG LFLDE+G L + Q MLL+AI+E+ + Sbjct: 216 DLAPSAFFGHVKGAFTGADSTKKGYFNEAEGGTLFLDEVGNLALETQQMLLRAIQERRYR 275 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P G S + ++IA T DL + V E +FR+DL R++ + T+P LR QEDI P Sbjct: 276 PIGDKTDKSFNVRIIAATNEDLEKAVIEKRFRQDLLYRLHDFEITVPPLRDCQEDIMPLA 335 Query: 373 DY--EV---ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFAT 427 ++ E+ E S+TG F+ EAR+ L T P W GN REL + A Sbjct: 336 EFFREIANNELECSVTG----FDAEARKTLL---THP---WPGNVRELRQKIMGAVLQAQ 385 Query: 428 SGRITLDVVE 437 +G + + +E Sbjct: 386 TGVVMKEHLE 395 >UniRef50_D0MKJ7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MKJ7_RHOM4 Length = 990 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 115/344 (33%), Positives = 174/344 (50%), Gaps = 25/344 (7%) Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P ++ QI +V S +P+L+ G +G GK +AR + R FV NCA Sbjct: 661 SPAMRALVHQIYRVR-SSHSPVLITGESGTGKELIARAVHATSDRR---DAPFVAFNCAN 716 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFGH KGAFTGA ++ G++R+A+GG LFLDEIG+L + Q LL+ ++E Sbjct: 717 VPPELIDSHLFGHEKGAFTGATQANPGVIRAADGGTLFLDEIGDLPLEVQPKLLRFLQEG 776 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 +P G+ R V + +++A T RDL LV EGKFREDLY R+N+ +P LR+R+EDI Sbjct: 777 EIFPLGARRPVRVNVRVVAATHRDLEALVREGKFREDLYYRLNVIPLHVPPLRERREDIP 836 Query: 370 PNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 + + + +V + A A + + W GN R+L + R F S Sbjct: 837 VLVRHFLNTLRPPGAPAVSITSRAMEALMRY------DWPGNVRQLRNEIERALVFVASE 890 Query: 430 RI-TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD--RMQLEHVIAICRQAKS 486 + T+D+ + R E TAL + + L D + +E V+A R Sbjct: 891 PVPTIDLKDLSPAVQRALRDEPARPVRTALDSNQPLDAVLADTEKALIEQVLAENR--GR 948 Query: 487 LSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHS 530 +SAA R L ++RQG L K + R G+ Q +H+ Sbjct: 949 ISAAARAL-GLTRQG---------LYKKMKRLGIDPARFQRRHT 982 >UniRef50_Q7NTB1 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NTB1_CHRVO Length = 775 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 91/258 (35%), Positives = 139/258 (53%), Gaps = 18/258 (6%) Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA--FVEVNCATL 250 F R+++ + +VA + +L+ GPTGAGK +A + RH F+++NCA + Sbjct: 28 FQRLLQLVRRVAPTDKT-VLIWGPTGAGKEVIAHEL-----HRHSLVAGQPFIDLNCAAI 81 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 + LFGH +GAFTGA+ SR GLL G LFLDEIGEL Q LL+ +E ++ Sbjct: 82 PEHLMEAELFGHARGAFTGAQGSRVGLLARVGRGTLFLDEIGELPLTLQPKLLRVLETRS 141 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 F P GS +++A T RDL+ V +G+FREDLY R++++ +LPGL QR++DI P Sbjct: 142 FRPLGSAESQHFAGRVVAATHRDLQAAVRDGRFREDLYYRLSVFVLSLPGLEQRRDDI-P 200 Query: 371 NLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 L +E ++ +RF + A + W GN R+L + V R+ A Sbjct: 201 AL---IEHFCAMQPRPLRFAAD------AVTRLQHSRWPGNVRQLRSLVDRLGVLADGPL 251 Query: 431 ITLDVVEDEINRLRYNWQ 448 IT +++ + + W Sbjct: 252 ITAAALDEFLEPQAHAWH 269 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 150/274 (54%), Gaps = 14/274 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I R+ ++E+IE+V + A +L+ G G GK +AR I + + F+EV Sbjct: 140 IVGRSFGIRSLLERIERVT-GTPARVLITGENGTGKELVARAI---HRGSQRARKPFIEV 195 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + S LFGH+KG+FTGA R G A+GG LFLDEIG++ QA +L+ Sbjct: 196 NCAAIPSELIESELFGHMKGSFTGAIADRAGKFEQAHGGTLFLDEIGDMSQSAQAKVLRV 255 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +++ G + V D +++A T +DL + +A G+FREDLY R+N+ T+P LR+R+ Sbjct: 256 LQDGFVTRIGGSKPVQVDVRVLAATNKDLEEEIAAGRFREDLYYRLNVVPITVPALRERR 315 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI + + +++ A G R ++ A + W GN REL ++ R+ Sbjct: 316 EDIPLLVRHFLQQFAERDGLPARSISDE-----ALQRLSELDWPGNVRELRNTMERLVIL 370 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 A++ I++ +I+RL + + PS + +LL Sbjct: 371 ASAASISV----ADIDRL-AGRRTAEPSGIGSLL 399 >UniRef50_C0GP34 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GP34_9DELT Length = 459 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 101/282 (35%), Positives = 144/282 (51%), Gaps = 12/282 (4%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 RQQ + + I P ++ K A ++ + +LL G TG GKSFLA + Sbjct: 132 RQQDVIYDLDRIVASTPAMQDILSWTRKYA-QTESNLLLTGETGTGKSFLAGAV-HFNSP 189 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R + F+++NCA L + S LFGH KGAFT A ++R G L A GG +FLDEIGE+ Sbjct: 190 RKK--RPFIKINCANLPENLLESELFGHEKGAFTDATQTRVGRLEQAAGGTVFLDEIGEM 247 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 QA L+ +EEK F G +R + SD ++I T R+L Q++ FR DLY R+N+ Sbjct: 248 TPALQAKFLQVVEEKNFQRLGGNRTIYSDIRIIVATNRNLEQMMEASDFRSDLYYRLNIL 307 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 LP LR+R++ IEP +ER L + + EA A+ W GN R Sbjct: 308 KLHLPPLRERKQCIEPLTRMLLERICRQLRKKMMDISPEALEILGAYH------WPGNIR 361 Query: 414 ELSASVTRMATFATSGRITLDVVE-DEINRLRYNWQESRPSA 454 ELS + R S IT + + + L+ N ++ PSA Sbjct: 362 ELSNVLERAILLEHSDVITAESIHLNSGLHLQENSYQNSPSA 403 >UniRef50_C0ZBK7 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZBK7_BREBN Length = 473 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 92/245 (37%), Positives = 135/245 (55%), Gaps = 14/245 (5%) Query: 205 IKSRAPI----LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 +K AP+ + G TG GKS+LA +I +L + + SG FV VNC+ + S LF Sbjct: 172 MKKAAPVDTTVFITGETGVGKSYLAEQIHQLSE---RSSGPFVHVNCSAIPETLIESELF 228 Query: 261 GHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 G+ KGAFTGA S + GL++ A+ G LFLDEI EL Q+ LL ++ KTF P G + Sbjct: 229 GYHKGAFTGASHSGKIGLVKMADKGTLFLDEISELPYHLQSKLLLLLQNKTFMPIGGTKT 288 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 ++D ++I T +L++LV GKFR DLY R+N+ +P LR+R++DI P L + ++R Sbjct: 289 YTADIRIITATNANLQELVRLGKFRHDLYYRLNILPINVPPLRERKDDIFPLLHHNLQRF 348 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 S RF+ E Q W GN REL V R+ + I + + +E Sbjct: 349 NSKHNQKRRFSPE------VLDVLHQYEWPGNVRELENLVERIVITSKLDEIQVSDLPEE 402 Query: 440 INRLR 444 + +R Sbjct: 403 LRSIR 407 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Ta... 730 0.0 UniRef50_D0LHL3 Sigma 54 interacting domain protein n=17 Tax=Pro... 574 e-162 UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4... 476 e-133 UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing p... 463 e-128 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 454 e-126 UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gamm... 451 e-125 UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 T... 451 e-125 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 450 e-125 UniRef50_D0KXW5 Sigma54 specific transcriptional regulator, Fis ... 450 e-125 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 446 e-124 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 443 e-123 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 443 e-123 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 443 e-122 UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA 442 e-122 UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2... 441 e-122 UniRef50_Q0HJJ1 Sigma54 specific transcriptional regulator, Fis ... 439 e-121 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 438 e-121 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 438 e-121 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 438 e-121 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 438 e-121 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 436 e-121 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 436 e-120 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 436 e-120 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 435 e-120 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 435 e-120 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 435 e-120 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 435 e-120 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 435 e-120 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 434 e-120 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 434 e-120 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 434 e-120 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 432 e-119 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 432 e-119 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 432 e-119 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 432 e-119 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 432 e-119 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 432 e-119 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 431 e-119 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 431 e-119 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 431 e-119 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 431 e-119 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 430 e-119 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 430 e-119 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 430 e-119 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 430 e-119 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 430 e-119 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 429 e-118 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 429 e-118 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 429 e-118 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 428 e-118 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 428 e-118 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 428 e-118 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 428 e-118 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 428 e-118 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 428 e-118 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 428 e-118 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 428 e-118 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 427 e-118 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 427 e-118 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 427 e-118 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 427 e-118 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 427 e-118 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 427 e-118 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 426 e-118 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 426 e-118 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 426 e-117 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 425 e-117 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 425 e-117 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 425 e-117 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 425 e-117 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 424 e-117 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 424 e-117 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 423 e-117 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 423 e-117 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 423 e-117 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 423 e-117 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 422 e-116 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 422 e-116 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 422 e-116 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 422 e-116 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 422 e-116 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 422 e-116 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 421 e-116 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 421 e-116 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 421 e-116 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 421 e-116 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 421 e-116 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 421 e-116 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 421 e-116 UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteob... 420 e-116 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 420 e-116 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 420 e-116 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 420 e-116 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 420 e-116 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 420 e-116 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 420 e-116 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 420 e-116 UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis F... 420 e-115 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 419 e-115 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 419 e-115 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 419 e-115 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 419 e-115 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 418 e-115 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 418 e-115 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 418 e-115 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 418 e-115 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 418 e-115 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 418 e-115 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 418 e-115 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 417 e-115 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 417 e-115 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 417 e-115 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 417 e-115 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 417 e-115 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 417 e-115 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 416 e-115 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 416 e-115 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 416 e-115 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 416 e-115 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 416 e-114 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 416 e-114 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 416 e-114 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 416 e-114 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 415 e-114 UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional... 415 e-114 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 415 e-114 UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomy... 415 e-114 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 414 e-114 UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammapro... 414 e-114 UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis... 413 e-114 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 413 e-114 UniRef50_Q3A203 Two component signal transduction response regul... 413 e-114 UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis ... 413 e-114 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 413 e-114 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 413 e-113 UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis F... 413 e-113 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 413 e-113 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 412 e-113 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 412 e-113 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 412 e-113 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 412 e-113 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 411 e-113 UniRef50_C1AEP0 Fis family transcriptional regulator n=1 Tax=Gem... 411 e-113 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 411 e-113 UniRef50_C1A7J8 Putative NtrC family two-component response regu... 411 e-113 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 411 e-113 UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammapro... 411 e-113 UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional... 411 e-113 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 411 e-113 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 411 e-113 UniRef50_A8V246 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 410 e-113 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 410 e-113 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 410 e-112 UniRef50_A8FWW4 Sigma-54 dependent transcriptional regulator, fi... 409 e-112 UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis F... 409 e-112 UniRef50_B2UXC1 Sigma54 dependent transcriptional regulator, Fis... 409 e-112 UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC ... 409 e-112 UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis F... 409 e-112 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 409 e-112 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with ... 408 e-112 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 408 e-112 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 408 e-112 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 408 e-112 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 408 e-112 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_P40734 Formate hydrogenlyase transcriptional activator ... 408 e-112 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 408 e-112 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 407 e-112 Sequences not found previously or not previously below threshold: UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 446 e-123 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 440 e-122 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 437 e-121 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 436 e-121 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 434 e-120 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 434 e-120 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 431 e-119 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 430 e-119 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 426 e-118 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 426 e-118 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 426 e-118 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 426 e-117 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 426 e-117 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 424 e-117 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 424 e-117 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 422 e-116 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 422 e-116 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 421 e-116 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 421 e-116 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 420 e-116 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 420 e-116 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 420 e-116 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 419 e-115 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 419 e-115 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 418 e-115 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 418 e-115 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 418 e-115 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 418 e-115 UniRef50_C6RKL1 ATPase family protein n=2 Tax=Acinetobacter radi... 417 e-115 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 416 e-115 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 416 e-114 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 416 e-114 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 416 e-114 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 416 e-114 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 415 e-114 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 415 e-114 UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammapro... 415 e-114 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 414 e-114 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 414 e-114 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 414 e-114 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 413 e-114 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 413 e-114 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 413 e-114 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 413 e-114 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 413 e-114 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 413 e-114 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 413 e-113 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 413 e-113 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 413 e-113 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 412 e-113 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 412 e-113 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 412 e-113 UniRef50_Q6ARB9 Probable two-component system response regulator... 411 e-113 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 411 e-113 UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis F... 411 e-113 UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteo... 411 e-113 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 410 e-113 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 410 e-113 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 410 e-112 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 409 e-112 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 409 e-112 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 409 e-112 UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis F... 409 e-112 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 409 e-112 UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_Q0F179 Putative transcriptional regulator, Fis family p... 408 e-112 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 408 e-112 UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis ... 408 e-112 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_Q6AJU9 Related to two-component system response regulat... 408 e-112 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 408 e-112 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 408 e-112 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 407 e-112 UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator ... 407 e-112 UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidat... 407 e-112 >UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Tax=Bacteria RepID=RTCR_ECOLI Length = 532 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 532/532 (100%), Positives = 532/532 (100%) Query: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK Sbjct: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ Sbjct: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 Query: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD Sbjct: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG Sbjct: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA Sbjct: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG Sbjct: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT Sbjct: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 Query: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI Sbjct: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 Query: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS Sbjct: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 >UniRef50_D0LHL3 Sigma 54 interacting domain protein n=17 Tax=Proteobacteria RepID=D0LHL3_HALO1 Length = 576 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 319/566 (56%), Positives = 393/566 (69%), Gaps = 47/566 (8%) Query: 2 RKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKR 61 ++ V G +G+ LD GRG++RW KWRP++ LC+ E L++DRLELLH + L T++ Sbjct: 6 KRLVVIGLLGSTLDRGGRGARRWDKWRPSVALCRHEDLLVDRLELLHMPAHQRLLHTVRG 65 Query: 62 DIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQI 121 DIA VSPETEV ++L + WDFEEV+A LH+FAR YEF+P+ EDYL+HITTGTHVAQI Sbjct: 66 DIAQVSPETEVRPHALDLRDAWDFEEVFAALHEFARAYEFRPDSEDYLVHITTGTHVAQI 125 Query: 122 CWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF 181 C FLL E+R+LPARL+Q+SPP E PG IIDLDLSRY+ +ASRF +E+Q + F Sbjct: 126 CLFLLTESRHLPARLLQTSPP-GPEHRGEPGRYAIIDLDLSRYDRLASRFRQEQQDRVSF 184 Query: 182 LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGA 241 LKSGI TR+P FN +IE++E+VA++SRAPILL+GPTGAGKS LAR+I EL++AR Q GA Sbjct: 185 LKSGIDTRSPAFNALIERVERVALRSRAPILLSGPTGAGKSQLARQIYELRRARRQLEGA 244 Query: 242 FVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAM 301 FVEVNCATLRGD AMS LFGHV+GA+TGA R GLLR A+ GMLFLDEIGELG DEQAM Sbjct: 245 FVEVNCATLRGDAAMSALFGHVRGAYTGASRDRAGLLRQADRGMLFLDEIGELGGDEQAM 304 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 LL+AIE+K F P G DR+ +SDFQLIAG+ RDL + VA+G+FREDL ARI+ W F LP L Sbjct: 305 LLRAIEDKRFVPVGGDREAASDFQLIAGSNRDLERAVAQGRFREDLLARIDTWWFRLPAL 364 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 R+R EDIEPNLDYE+ + G V FN EAR +L FA S +ATW GNFR+ +A++TR Sbjct: 365 RERPEDIEPNLDYELAQWTQRQGTRVTFNREARARFLHFA-SGEATWPGNFRDFNAAITR 423 Query: 422 MATFATSGRITLDVVEDEINRLRYNWQ--------------------------------- 448 MAT A+ GRIT+ V+DE++RLR WQ Sbjct: 424 MATLASGGRITIADVDDELSRLRARWQHAIPAASPQPPPSPPTPDHPSENHTVSENASID 483 Query: 449 ------------ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 S P A AL +D F+R QLE V+ +C + SLS AGR LF Sbjct: 484 RSSPEHAQQTTNPSWPRARAALGDEALAALDRFERAQLEDVLGVCALSDSLSEAGRALFA 543 Query: 497 VSRQGKASVNDADRLRKYLARFGLTW 522 VSR K NDADRLRKYLAR GL+W Sbjct: 544 VSRARKQRPNDADRLRKYLARHGLSW 569 >UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4 Tax=Deltaproteobacteria RepID=C0Q9L2_DESAH Length = 503 Score = 476 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 123/488 (25%), Positives = 210/488 (43%), Gaps = 30/488 (6%) Query: 40 VIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGY 99 D + L+ D + K+ I + V +L P F E+Y + Sbjct: 38 TYDEVCLISDWKPEK-TNAYKKWIETAG-NIPVRLYPKKLSGPTVFSEIYESVVKVVTDI 95 Query: 100 EFQPEKE-DYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIID 158 + K+ D HI+ GT W +L++ + A LI+SS + P E++ Sbjct: 96 LDRHGKDTDLTFHISPGTSQMAAVWIILSKTLFPNAELIESSIEQGVNTVSFPFELSAEF 155 Query: 159 LD-LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + L R S I ++P R+I + + VA++S P+L+ G + Sbjct: 156 IPNLLRPADRRLELLSRGLPPESPEFSQIIHKSPIMQRVIAKAQHVAVRS-VPVLIEGES 214 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK AR I A + F+ VNC + D S LFGHVKGAFTGA ++++G Sbjct: 215 GTGKELFARAIHN---ASPRKDKPFITVNCGAIPADLVESQLFGHVKGAFTGAEKAQKGY 271 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+ G LFLDEIGEL Q LL+ ++E G+ V D ++IA T R L Sbjct: 272 FEEADKGSLFLDEIGELPLLSQVKLLRTLQEGEVVRVGTATPVKIDVRIIAATNRSLIDE 331 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-----DSVRFNTE 392 + EG+FR DL+ R+ + +P LR+R D+ +D+ V + + + + + + Sbjct: 332 IHEGRFRSDLFYRLAVAILKIPPLRERSGDLSFLVDHFVAQVNTDSKNEPGYKDKKISPD 391 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP 452 A+ Q +W GN REL ++ R A ++ I + +ED + L + Sbjct: 392 AKNLM------FQHSWPGNVRELLNTIQRAAIWSFDSTINREDIEDALIPLGTSNPS--- 442 Query: 453 SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 L +G + + D+ + + ++ ++A +L +S L Sbjct: 443 DILNRPVGGDFKIEDMMEVVAKHYIEKALKEANGKKGKAAELVGLS--------SYQTLG 494 Query: 513 KYLARFGL 520 ++ ++ + Sbjct: 495 NWMKKYNI 502 >UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV58_POLNA Length = 512 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 136/495 (27%), Positives = 211/495 (42%), Gaps = 28/495 (5%) Query: 40 VIDRLELLHDARSRS--LFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 D++ LL + +F T P+ +V +I+L +P D+ +Y+ + Sbjct: 39 RFDKVYLLTNYPHARSVVFCTWLEATTGYLPD-QVELYDIDLPSPIDYAAIYSAVCSNLL 97 Query: 98 GYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV--T 155 ++ H++ GT W +L++ R+ PARLIQ+S R E ++ Sbjct: 98 AARLPRDEVQLTFHLSPGTPAMAAIWIILSKTRF-PARLIQTSRERGIEPVDFEFDLASD 156 Query: 156 IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 + L R +A R + + I ++ IE +VA+ P+L+ G Sbjct: 157 FLPEFLERGSARIERLSASPVGAVAQEFVAIVHQSTVMREQIELARRVAVY-DVPVLILG 215 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 +G GK A+ + R FV VNC + + A S LFGH KGAFTGA +S + Sbjct: 216 ESGTGKELFAQALHAANPKRKNAL--FVPVNCGAIPTELANSELFGHAKGAFTGAVKSHD 273 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 G A+GG LFLDEIG+L D Q LL+ ++ K P GS D +++A T RDL Sbjct: 274 GYFTQADGGTLFLDEIGDLPLDAQVRLLRVLQNKEVTPVGSGTARKVDVRIVAATHRDLA 333 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARR 395 VA G+FREDL+ R+ + LP LR+R+ D++ +D + D EA+ Sbjct: 334 ADVAVGRFREDLFHRLAVGILRLPPLRERRGDLDVLIDLFLSAFNDDARDR----PEAQH 389 Query: 396 AWL---AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP 452 L A W GN REL ++ R A ++ I VE I ++R Sbjct: 390 KVLSESARKLLHTHEWPGNVRELQHTLLRAAIWSPGESIDTRDVESAIFQVRRISD---- 445 Query: 453 SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + L + E L DR+ ++ AA +L S + L Sbjct: 446 AVLNQPISQGIELQQLLDRVARHYMERALEHTGHRKAAAAKLLGFS--------NHQTLL 497 Query: 513 KYLARFGLTWEAVQD 527 + R G+ D Sbjct: 498 NWEKRLGVGKGESDD 512 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 120/429 (27%), Positives = 207/429 (48%), Gaps = 38/429 (8%) Query: 101 FQPEKEDYLIHITTGT---------HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP 151 F+ + L ++G V + C + + Y+ +++++ +Q + Sbjct: 57 FKCDACKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYIT--VLKTAAVLSDDQGQTM 114 Query: 152 GEVTIIDLDLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 G V I+ D+S + + + + R + GI + + E +EK A +S P Sbjct: 115 GAVEIVT-DISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEK-AAQSDFP 172 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 + + G +G GK +A+ I L + +++VNCA L S LFGHVKGAFTGA Sbjct: 173 VFICGESGTGKELVAQAIHNLSP---RAEQPYIQVNCAALNESLLESELFGHVKGAFTGA 229 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + R+G +A+ G +FLDEIG+L Q LL+ +E KTF G +R +S D + I T Sbjct: 230 LQHRKGRFEAAHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITAT 289 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-F 389 ++L L+A G FREDL+ RIN+ LP LR+R+ED+ +D+ ++R + +++ Sbjct: 290 NKNLPDLIARGGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGL 349 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + EA R ++ Q +W GN REL +++ A RI + + + + ++Q Sbjct: 350 SPEAMRIFM------QYSWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQA 403 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 L A AEN+ + Q + +I +Q+ + +L ++R V + Sbjct: 404 ------VDLPPAPAENL---QQRQKQELIEALKQSSGNKSQAARLLGINR-----VTVLN 449 Query: 510 RLRKYLARF 518 R+RKY Sbjct: 450 RMRKYGIDL 458 >UniRef50_A0KWT7 Response regulator receiver protein n=2 Tax=Gammaproteobacteria RepID=A0KWT7_SHESA Length = 500 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 120/487 (24%), Positives = 220/487 (45%), Gaps = 26/487 (5%) Query: 41 IDRLELLHDARSR--SLFETLKRDIASVS--PETEVVSVEIELHNPWDFEEVYACLHDFA 96 D++ +L + + S FE + +V+ P ++ V+ + +P D+ + + Sbjct: 35 FDKIVILSNDKEETWSRFEAFLKKSMAVNGRPYNDIKIVKAHIESPIDYHTIAKETEKWI 94 Query: 97 RGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI 156 + E + I++T+GT L+ + + + +Q++P + P + Sbjct: 95 T--KLSEEADTLSINLTSGTPAMTALSVLIGKGKA-NTKFLQATPTNELLHVEIPIDFGS 151 Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 + R + + L+ S I ++ + + ++VA S P+L+ G Sbjct: 152 ---EYLRSASKNIAYLATSHPKLESAFSVITAKSLVMQDTVSKAKRVAA-SEVPVLILGE 207 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 TG GK +A+ I +A + VNC L + STLFGH KGAFTGA + G Sbjct: 208 TGTGKEVMAQAIH---RASLRAGQPLKIVNCGALAPNLVDSTLFGHKKGAFTGADKDYPG 264 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 L AN G LFLDE+GEL D Q LL+A+++ G + ++ D ++IA T +DL + Sbjct: 265 LFEQANNGTLFLDEVGELPLDVQVKLLRALQQGEVTRLGDTKTINVDVRVIAATHQDLNK 324 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRA 396 LVA GKFREDL+ R+ + +P LR+RQEDI + V++ ++ ++ + + Sbjct: 325 LVANGKFREDLFYRLAVGVIRIPSLRERQEDIPLIVGQLVDQINHSASKHPQYISK-KIS 383 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 W GN R+L +++ R ++ + + + + R E P +LT Sbjct: 384 EKGIKFLSSQYWPGNIRDLWSTLNRAFLWSDTSIMDEYELSQAML-TRSQVVEDVPISLT 442 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 + + + L D +Q +V+A + + ++ Q+ + D L ++ Sbjct: 443 --FNDKVDIVQLTDNLQKNYVVAALKASGNVKKHATQMLGL--------KDHQTLTNWMK 492 Query: 517 RFGLTWE 523 R G+ E Sbjct: 493 RLGIATE 499 >UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYB0_9GAMM Length = 509 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 132/527 (25%), Positives = 217/527 (41%), Gaps = 27/527 (5%) Query: 1 MRKTVAFGFVG-TVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETL 59 M K V +VG LD G ++ P L ++ LL++ + + Sbjct: 1 MTKEVLVSWVGGNDLDAPGSAGEQLG---PILSTLL--DRPHAQVHLLYNYPTARVEPYG 55 Query: 60 KRDIASV----SPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTG 115 +A V + V ++L P + ++Y + + +KE + ++ G Sbjct: 56 DWLLAQVKERLGADILVDLHTVKLETPVHYGDIYQASNRLLGQLVNEFDKEQISVLVSPG 115 Query: 116 THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV--TIIDLDLSRYNAIASRFAE 173 T W LL + + +++QSSP P ++ I L+ +A R A Sbjct: 116 TPQMHAVWLLLCKTTF-KLQMLQSSPEGGVGDVDVPFDIAADFIPSLLAESDATLRRLA- 173 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 Q + I T++P I + +K+A + P+L+ G +G GK AR I E + Sbjct: 174 SGQTATPPAFTDIITQSPVLKAQIIKAQKIAER-DIPVLILGESGTGKELFARAIHEASR 232 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 + V VNC + + S LFGH KGAFTGA + + G A+GG +FLDE GE Sbjct: 233 RGGESGSELVSVNCGAISQELVDSELFGHKKGAFTGAEKDKAGYFEVADGGTIFLDEFGE 292 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L A+ Q LL+ + + TF G + D ++IA T RDL + EG FREDL+ R+ + Sbjct: 293 LPAETQVRLLRVLNDGTFARVGDTEERKVDVRVIAATNRDLMAEMVEGNFREDLFYRVAV 352 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 LP LR+R+ D+ D +E + + + A W GN R Sbjct: 353 GVINLPPLREREGDLMLLTDKLLEGINNEALGLDPGYKHKKLSAKARNIIKSHGWPGNVR 412 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL AS+TR + ++ IT E E+ L L + +L ++ Sbjct: 413 ELQASLTRASVWSGGETIT----EREMREALLERPAKAGDLLGRSLDNTFDIQELIKDLK 468 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ + + + + N+ L K++ GL Sbjct: 469 KHYIKKALAENGNNKTKSAEKLGL--------NNYQTLNKWMEDVGL 507 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 450 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 158/353 (44%), Gaps = 20/353 (5%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 L R N I +Q + +P R+ E IEKVA + + +L+ G +G G Sbjct: 128 LERENTILK-----KQLKKKYRFENFVGDSPQIQRVFELIEKVA-DTDSTVLITGESGTG 181 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I R V +NC + + S LFGH KGAFTGA ++R G Sbjct: 182 KELIARAIHYNSPRR---DDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFEV 238 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 ANGG +FLDEIG++ + Q LL+ I+E+ F GS R + D +++A T +DL + V + Sbjct: 239 ANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVEK 298 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLA 399 +FREDLY R+N+ +P LR R+ DI +D+ + + A+ V R + A A + Sbjct: 299 KEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALMG 358 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 W GN REL V R+ ++ I + + I L P A L Sbjct: 359 ------HHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGL----DSKEPEAGLKLP 408 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + ++ +A + +L ++R +R Sbjct: 409 SGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNIR 461 >UniRef50_D0KXW5 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KXW5_HALNC Length = 489 Score = 450 bits (1157), Expect = e-125, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 173/400 (43%), Gaps = 25/400 (6%) Query: 86 EEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEAR-----YLPARLIQSS 140 E+ A L + Q E + IH T + IC+ E LP + + Sbjct: 14 AEIGADLTQWLTLLGVQAESVSHSIHAVTDDVIGGICFADACETHLDRPQTLPWIALDAD 73 Query: 141 PPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE-RQQTLDFLKSGIATRNPHFNRMIEQ 199 P R + P LS I R R + L G+ + P ++ + Sbjct: 74 PARWLGAVQTPFATLTWPCTLSGLQGIVQRLISRWRGEQLVAAGRGLVGQTPVMRQLRAE 133 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IE+VA S A +L+ G +G GK +AR I L ++ FV VNC + + S L Sbjct: 134 IEQVA-PSDATVLILGESGTGKEVVARMIHRLS---NRADKPFVPVNCGAIPAELLESEL 189 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA +R G A GG LFLDEIG++ Q +L+ ++E+TF G Sbjct: 190 FGHEKGAFTGAISARAGRFELAEGGTLFLDEIGDMPLPMQVKILRVLQERTFERVGGRHT 249 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 ++D +++A T RDL + EG FR+DLY R+N++ LR EDI + +R Sbjct: 250 FTADVRIVAATHRDLEVHIQEGSFRQDLYYRLNVFPLETQPLRVLCEDIPEIVRALTQRF 309 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 A + A A A W GN REL + R+ + + + ++ Sbjct: 310 ALAGRPVAQLTDGALTALSAL------PWPGNVRELGNVIERLGILYPDQVVDIAQLPEK 363 Query: 440 IN-RLRYNWQES--------RPSALTALLGAEAENIDLFD 470 I +L +WQ +P + GA E++D D Sbjct: 364 IRMQLPADWQMPEMPAPTVTKPPEPLSHHGATPEDVDPRD 403 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 446 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 105/370 (28%), Positives = 179/370 (48%), Gaps = 24/370 (6%) Query: 154 VTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILL 213 + + L+ Y + + + + I ++P + + I KVA + A +L+ Sbjct: 110 ILFVKQALAMYRVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVA-PTNATVLI 168 Query: 214 NGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES 273 G +G GK +A+ I H+ +V VNCA L S LFGH KGAFTGA Sbjct: 169 QGESGTGKEMVAKSIHFNS---HRKDAPWVAVNCAALAESILESELFGHEKGAFTGAAAM 225 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 ++G A+GG LFLDEIGE+ + Q LL+ ++EKTF G + + D +LIA T RD Sbjct: 226 KKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRD 285 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA---SLTGDSVRFN 390 L++ V FREDL+ R+N+ LP LR+RQ+DI +D+ ++++A S + + Sbjct: 286 LKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVH 345 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 + R + +A W GN REL + R S I+++ + E+ R N Sbjct: 346 PDVHRLFQEYA------WPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHM 399 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + A L E + + ++ ++ + + + ++ + Q+ + + G + Sbjct: 400 EGIPVDATL---YETLSMVEQAMIKRAMLM---SDNVQSHAAQILGIGKSGLN-----QK 448 Query: 511 LRKYLARFGL 520 ++K+ FGL Sbjct: 449 IKKFGLDFGL 458 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 109/413 (26%), Positives = 175/413 (42%), Gaps = 21/413 (5%) Query: 103 PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 PE + + + + ++ A I++ + P ++ + + + Sbjct: 59 PEMDGLEVLVKAKD-LMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVI- 116 Query: 163 RYNAIASRFAEE---RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 R + + EE + L+ I + + + IEKVA S A +L+ G +G Sbjct: 117 RQALMVNHLQEEVTFLRSELNKKYGQIVGNSQAIHDVCGLIEKVA-DSNATVLVTGESGT 175 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK A I +L R + FV +NCA L S LFGH KGAFTGA + G Sbjct: 176 GKEITALSIHQLSSRRDK---PFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFE 232 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 AN G LFLDEI E+ Q LL+ ++EK F G + D ++IA T RD + + Sbjct: 233 LANQGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIR 292 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLA 399 +G FREDL+ R+N+ LP LR+R EDI + +++ R + EA ++ Sbjct: 293 KGTFREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPSQEQ--RMSPEAMGLLIS 350 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL + R A I + EI +L E + L+ Sbjct: 351 YE------WPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKL----DEVKNETTHGLI 400 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 ++ FD ++ E ++ ++ QL ++R RL+ Sbjct: 401 INFPDDGISFDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 443 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 100/388 (25%), Positives = 181/388 (46%), Gaps = 35/388 (9%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHF 193 + ++ +P P E+ ++ ++ + + R+Q D G + ++ Sbjct: 93 QAMKLGAFNYLTKPVDPDELLLLVQNVFERSQLLEENQTMRRQLRDRYSLGNMVGKSKAM 152 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + IEKVA + A +L+ G TG GK +AR I A + + FV ++CA + Sbjct: 153 QELFNLIEKVA-QYEANVLVTGETGTGKELVARGIHY---AGQEENLPFVPIDCAAVPET 208 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH +GAFTGA E ++G + A+GG LFLDEIGEL Q L+ ++EK Sbjct: 209 LLESELFGHSRGAFTGAAEQKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVR 268 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G R+ D ++IA T RDL +A G++REDL+ R+N+ + +P LR+R++DI P ++ Sbjct: 269 LGETRRRKVDVRIIAATNRDLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVN 328 Query: 374 YEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + + ++ + G +++ E ++A+ W GN REL + R I Sbjct: 329 HFLAKYNAQNGKAIQGMTGEVMEVFMAY------DWPGNVRELENVIERAVVLCMGDSIA 382 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 + + ++ + + ++L + M+ ++ + + +A Sbjct: 383 MSCLPPKLQERSAPAPST-------------DGVNLME-MEKRLIVQTLEKTEQNQSAAA 428 Query: 493 QLFDVSRQGKASVNDADRLRKYLARFGL 520 + +SR+ +LR + GL Sbjct: 429 RELGISRK---------QLRTKMKHHGL 447 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 113/412 (27%), Positives = 185/412 (44%), Gaps = 26/412 (6%) Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ 176 A+ C E R +P +I+ + K + G V + A R Sbjct: 85 PEAKECVLRHREGRDVP--VIKQARVVKDDNGELIGIVETVTDMTELQKARHKAEEATRL 142 Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 + I ++ + ++ + A SR+ +L+ G +G GK +AR I Sbjct: 143 LGQHYSLGNIMGKSEVMQEVFSRV-RAAAASRSTVLIQGESGTGKELIARAIHYNS---D 198 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 Q FV VNC+ L S LFGHVKGAFTGA R G A+ G +FLDEIGEL Sbjct: 199 QADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIFLDEIGELSQ 258 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 Q LL+ ++E+ G + + D ++I T RDL +L+A+G FR+DLY R+ ++ Sbjct: 259 TIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDLYYRLKVFPI 318 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 TLP LRQR+ED+ +++ + + TG V EA R + W GN REL Sbjct: 319 TLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRL------VFEYHWPGNVREL 372 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 ++ + +I ++ + EI R + + +R + + G+ + ++ E Sbjct: 373 ENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGSRQHH----EQPDRE 428 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 ++A+ + AA + VSR + KY+ ++G+ + D Sbjct: 429 QLLALLEANQWNKAAVARQLGVSRTA---------VWKYMKKWGIPLQPEPD 471 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 116/413 (28%), Positives = 191/413 (46%), Gaps = 37/413 (8%) Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE- 173 G +V + C + + Y+P +++S+ E G V + DLS + + + Sbjct: 96 GVYVRRKCSIMRKDGTYVP--ILKSASILHAEDGSTVGAVETMT-DLSELDRKENELQQL 152 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 R + + G+ + R+ IEK A +S AP+ + G +G GK +AR I +L Sbjct: 153 SRMLDEETMFHGMVGHSAQMRRVFHLIEK-AAQSDAPVFIYGESGTGKELVARAIHDLGP 211 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 Q +V+ NCA L S LFGHVKGAFTGA R+G +A+GG +FLDEIG+ Sbjct: 212 RSDQ---PYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGD 268 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L Q LL+ +E KTF G +RQ+S D ++I T + L +L+++G+FREDL+ RIN+ Sbjct: 269 LPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINV 328 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNF 412 LP LR+R+EDI DY ++R + ++ + + R ++ + +W GN Sbjct: 329 IPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDY------SWPGNV 382 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 REL +S+ A G I + + + E R Sbjct: 383 RELKSSLEYAFVLADHGHIEPEHLPHNVVVTAPPVAEPRYGNPG-------------HDS 429 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 Q + ++ QA + ++ ++R + + + G+ V Sbjct: 430 QRQQLVQALHQAGGNKSEAARILGINRV---------TVLNRMRKHGIDMTRV 473 >UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA Length = 560 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 211/470 (44%), Gaps = 51/470 (10%) Query: 72 VVSVEI-ELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITT-GTHVAQICWFLLAEA 129 +V VE+ ELH D ++ YA DF F+ E +H++ G CW LL A Sbjct: 111 MVQVEVNELHLSHDLKQFYA---DFNWLNSFEAE-----VHLSEFGASDQPACWMLLGYA 162 Query: 130 RYLPARLIQSSPPRKKEQ--PRGPGEVTIIDLDLSRY------------NAIASRFAEER 175 + ++ + ++ +G II LS + +A++ Sbjct: 163 CGYSSFVMGQTIIYQETHCVAQGDEHCRIIGKPLSEWENADELIRFMSPDAVSDEII-AL 221 Query: 176 QQTLDFLKSGI-------------ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Q L+ LK I + + ++ + ++K A S+ +LL G TG GK Sbjct: 222 QAELNQLKKNIYTEAESDYTMFNAVGESVAYRKVCDLLKKAAG-SKVAVLLQGETGVGKE 280 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I Q + Q FV VNCA + D S LFG KGAFTGA +SR G A+ Sbjct: 281 AFARGIHNGSQRQAQ---PFVAVNCACIPPDLIESELFGVEKGAFTGAVQSRMGKFERAH 337 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDE+ EL QA LL+ ++E F G R D +L+A T DL Q V +GK Sbjct: 338 GGTIFLDEVVELSPRAQAALLRMLQEGEFERVGDSRTRQVDVRLVAATNEDLEQAVKDGK 397 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FR DLY R+N++ +P LR+R+EDI +++ + R ++ +++ ++ + ++ Sbjct: 398 FRADLYYRLNIFPVIIPPLRERREDIPLLINHFLARFENMYNKTLKGLSDKAKNFM---- 453 Query: 403 SPQATWRGNFRELSASVTRMATFATS-GRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 + W GN REL + R I LD + + L + ++ +L + Sbjct: 454 -MKYDWPGNIRELENLLERATLLTDHQQEIKLDSLFPQHKDLEAVGETAQ--SLINVEDL 510 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 +EN L D+++ + + +++ + ++ +SR L Sbjct: 511 FSENFSL-DQLEQNIIRSAMDKSQQNVSEAARMLGISRATLDYRLKKITL 559 >UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2 Tax=Myxococcales RepID=A9GY33_SORC5 Length = 523 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 150/511 (29%), Positives = 226/511 (44%), Gaps = 42/511 (8%) Query: 29 PTLCLCQQESLVIDRLELL----HDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWD 84 P L L QE D + +L +A SR+L E + + +P E+ V+++ +P D Sbjct: 31 PVLRLLDQEESRYDAIVVLTIPAGEAPSRALVERAR----ARAPRIELRVVDVD--DPSD 84 Query: 85 FEEVYACLHDFARGYE--FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPP 142 +++ L + + F P + ++ GT AQ W +L +A LPAR++Q P Sbjct: 85 HAKLFRALGKLSAQLKRAFPPAAWATDVLLSAGTPQAQTLWVILVQAGILPARMLQVIPA 144 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRFAE--ERQQTLDFLKSGIATRNPHFNRMIEQI 200 P P V + LD+ + I + E + + + + + +I Sbjct: 145 AFVPHPH-PRPVREVRLDIEGFPEIRALREEVVRLRAEARARDTVLVGESEPMRFLRARI 203 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 +VA + P+L+ G TG GK AR I E + G F+ NC+ S LF Sbjct: 204 ARVAA-TDVPVLIVGETGTGKELAARAIHEHSP---RARGPFIAENCSVFAEGVLASELF 259 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH GAFTGA R G+ A+GG LFLDEIGEL QA LL+ +++ T G + ++ Sbjct: 260 GHEAGAFTGAAGRRRGVFEQAHGGTLFLDEIGELSPRVQASLLRVLQDGTLRRVGGEAKI 319 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER-H 379 D +++A T RDL +V EG FREDLY R+ +P LR R DIE + ++ Sbjct: 320 ELDVRVLAATHRDLAAMVEEGTFREDLYYRLRGAIIEVPPLRARGGDIEVLVGAFLDEVQ 379 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 + G + EA R Q W GN REL A V R F + + + E Sbjct: 380 SRRKGRGLEVTREALRRL------YQHAWPGNVRELRAEVQRWGVFCE-HTVDVRDLAPE 432 Query: 440 INRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKS--LSAAGRQL--- 494 I + P+A A GA E V + S +A GR L Sbjct: 433 I---------ASPAARPASGGAGGIARATASEAGGEEVAPLAETVASAERAAIGRALEVH 483 Query: 495 -FDVSRQGKASVNDADRLRKYLARFGLTWEA 524 ++SR +A D + L++ +A + L EA Sbjct: 484 EGNLSRAARALAIDRNTLKRKMAAYRLGKEA 514 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 440 bits (1131), Expect = e-122, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 158/385 (41%), Gaps = 22/385 (5%) Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 E P + + L + + + + + +P + + I ++A Sbjct: 99 EYIVKPINLDELLSTLEKATTVTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIA- 157 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 S +L+ G +G GK +A I + FV+++C + + S LFGH KG Sbjct: 158 DSDVTVLIQGESGTGKELVAEAIHYNSP---RQGKPFVKIDCTAIPENLLESELFGHEKG 214 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA + G A+GG +FLDEIG++ QA LL+ ++EK F G D + Sbjct: 215 AFTGAHTRKLGKFELADGGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVR 274 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T +DL + V G FREDLY R+N+ LP LR+R+EDI +DY V G Sbjct: 275 IIAATNKDLEERVKSGLFREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGK 334 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 V T + L Q W GN REL R A IT + + + + R Sbjct: 335 QVTGLTRSVADIL-----LQYNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVR 389 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 E+ A + E + M+ ++ + + A + +SR Sbjct: 390 GRTEAWHPAEDRGVLPLKEMVA---EMERSAILRALEEYRGNKTAVARALGMSR------ 440 Query: 506 NDADRLRKYLARFGLTWEAVQDQHS 530 L + G+ + HS Sbjct: 441 ---TTLYAKMKELGIA-DPENKDHS 461 >UniRef50_Q0HJJ1 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q0HJJ1_SHESM Length = 514 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 123/496 (24%), Positives = 203/496 (40%), Gaps = 42/496 (8%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 + DRLEL+++ S + L+ ++S V + + +L +P +F E+Y Sbjct: 51 DVTFDRLELIYNYPSDLVTPYLELLTGNLS--CPVNARKADLSSPINFGEIYLAAERLLD 108 Query: 98 GYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTII 157 E I ++ GT Q W LL + R+ Q+S + P ++T Sbjct: 109 --VISCETIALSILLSPGTPAMQAVWILLGKTRF-ACNFYQASKEQGVNIVEIPFKLT-- 163 Query: 158 DLDLSRYNAIASRFAEER-------QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 + Y + A D I T +P +++ +V Sbjct: 164 ----AEYIPSMTNLAPTEFGQLGLLDSDADPAFDDIITLDPEML-LLKAKAQVLASHEVS 218 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK AR I R + FV VNC + S LFGH KGAFTGA Sbjct: 219 VLICGESGTGKEMFARAIHNASARRDK---PFVAVNCGAFPSELIDSILFGHKKGAFTGA 275 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G+ A+ G LFLDE GEL + Q LL+ +++ F G ++ SS+F+LI T Sbjct: 276 VSDKVGVFELAHSGTLFLDEFGELDSSAQVRLLRVLQDGKFTRLGDSKERSSNFRLITAT 335 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD--SVR 388 RDL V++G+FREDL+ R+ + +LP LR RQ D++ D + Sbjct: 336 NRDLMADVSKGRFREDLFYRVAIGVLSLPPLRSRQSDLDHLADQFTAMLTQEYPSLGGKK 395 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 +T A++ W GN REL A++ R A ++ + + + +I R + Sbjct: 396 ISTAAKKI------ISNHRWPGNIRELKATILRAALWSETAVLE----DVDILRAILSTL 445 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 ++ S L + + + D ++ ++ L N+ Sbjct: 446 QNSESILERDISKGVDIKSIIDLVERHYLERGLAFTSGNKRKTALLLG--------YNNH 497 Query: 509 DRLRKYLARFGLTWEA 524 L L + GL + Sbjct: 498 QTLNNRLKKLGLENDN 513 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 111/384 (28%), Positives = 170/384 (44%), Gaps = 31/384 (8%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + + + L + AE D + I +P ++E + KVA Sbjct: 664 KVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVA-N 722 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S + +L+ G +G GK LA+ + E + V VNCA L S LFGHVKGA Sbjct: 723 SESTVLVRGESGTGKELLAQAVHENSS---RHEKPLVRVNCAALSPSLLESELFGHVKGA 779 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E R G ANGG LFLDEIG++ D Q LL+ ++E+ F G + D +L Sbjct: 780 FTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRL 839 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 I T ++L Q + EG FREDLY R+N+ + TLP LR+R+EDI Y ++R A+ G Sbjct: 840 ITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKR 899 Query: 387 VR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI----- 440 + + +A A +A W GN R+L + R A S IT+ + ++ Sbjct: 900 ISHIDPDAIEAL------ERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADLLEQKK 953 Query: 441 ---------NRLRYNWQESRPSALTALLGAEAENIDLFDRM-QLEHVIAICRQAKSLSAA 490 +R + P + ++ + R+ + E + + A Sbjct: 954 RLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECDGNKAQ 1013 Query: 491 GRQLFDVSRQGKASVNDADRLRKY 514 +L + R +L+KY Sbjct: 1014 AARLLGMPRS-----TYYSKLKKY 1032 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 169/386 (43%), Gaps = 18/386 (4%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHF 193 + +Q +P ++T ++++ ++ + K S I +P Sbjct: 94 KAMQLGAWDYITKPFDLDDITRTINRFFEQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVM 153 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + + I VA S A +L+ G TG GK +A I G V+VNCA L Sbjct: 154 QEVYKTIGLVAA-SDATVLITGETGTGKELVAETIHYNSTFSQ---GPLVKVNCAALPET 209 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KG+FTGA R+G A+ G +FLDEIGE+ Q LL+ ++E+ F Sbjct: 210 LLESELFGHEKGSFTGADRQRKGRFELAHKGTIFLDEIGEMTLGTQRKLLRVLQEREFER 269 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + D ++IA T + L + VA GKFREDL+ R+N+ LP LR+R+EDI +D Sbjct: 270 VGGSSTIKVDTRVIAATNKKLEEEVAAGKFREDLFYRLNVIHIHLPPLRERKEDIPLLVD 329 Query: 374 YEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 Y +++H G + EA + + + W GN REL ++ R A G IT Sbjct: 330 YFLQKHRYHKDGPPASISEEAIKVLM------EHDWPGNVRELENTIERAVILAQGGVIT 383 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 + + + R L+ ++ + ++ + ++ +AK A Sbjct: 384 THHL------VFSQIRTGRNIDLSEVIDKTRSLDEAMRIIESKIILEALEKAKGDHALAA 437 Query: 493 QLFDVSRQGKASVNDADRLRKYLARF 518 ++ D+S + + Sbjct: 438 EILDISESELKRKLRTADKYRREEQL 463 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 180/374 (48%), Gaps = 24/374 (6%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 +++ D +R A + EE + +F++ I +P +++ Q+++VA + + +L+ Sbjct: 627 VLMEQDKARLEAQNTYLQEEIRSQHNFVE--IVGNSPSLLQVLRQVDRVA-STDSTVLIC 683 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G TG GK +AR I + R + V+VNC + S LFGHVKGAFTGA +R Sbjct: 684 GETGTGKELIARAIHDRSPRRER---PLVKVNCGAISTGLVESELFGHVKGAFTGAIANR 740 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 EG A+GG +FLDE+GEL + Q LL+ ++E+ F P GS + V D ++IA T RDL Sbjct: 741 EGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIAATNRDL 800 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEAR 394 +V EGKFR DL+ R+N+ T+P LRQR DI + +E+ A G S+ E Sbjct: 801 ETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLGQIAEET 860 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD--VVEDEINRLRYNWQESRP 452 A Q W GN REL + R +T +T++ + + + Sbjct: 861 -----MARLCQYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQGPGWTPE 915 Query: 453 SALTALLGAEAENI-----DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 A+ + + + + ++ +H+ ++ +Q ++ + K Sbjct: 916 RAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNW------RIEGANGAAKILNLQ 969 Query: 508 ADRLRKYLARFGLT 521 LR + + G+ Sbjct: 970 PSTLRSRMQKLGIV 983 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 168/373 (45%), Gaps = 16/373 (4%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ-QTLDFLKSGIATRN 190 + A L+++ E+P E+ + A+ + + + L + I + Sbjct: 89 MTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQRQSFKSKPCIKNRSLLNNIIGES 148 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 + E IEKVA S + +L+ G +G GK +AR I +L ++ + FV VNCA + Sbjct: 149 DRMLSLFEMIEKVAG-SDSTVLIQGESGTGKELVARAIHDLS---NRATKNFVPVNCAAI 204 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 D S LFGHVKG+FTGA +R G A+ G LFLDEIG++ + Q LL+ ++ K Sbjct: 205 PDDLLESELFGHVKGSFTGAVATRIGRFEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKE 264 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 P G+ R D ++IA T ++L LVA FREDLY R+++ TLP LR+R+ DI Sbjct: 265 LEPVGAARTKKVDVRIIAATNQNLEHLVASKIFREDLYYRLSVIPITLPPLRERKTDIPL 324 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 L+ +E+ V+ F+ F W GN REL V R+ SG Sbjct: 325 LLNNFLEKFNRNKQRKVQSFDKNTMDILCNF------DWPGNVRELENLVERLVILKGSG 378 Query: 430 RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA 489 IT + ++ ++ + R L + + + ++ + Sbjct: 379 TITFQDLPEKYRGIKSAPKSER----LTLPDTGFCLNSAVEDFENQLILQALEKTGGNKK 434 Query: 490 AGRQLFDVSRQGK 502 L ++ R Sbjct: 435 EAATLLNLKRTTL 447 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 437 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 167/373 (44%), Gaps = 14/373 (3%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASR-FAEERQQTLDFLKSGIATRN 190 + A L+++ E+P E+ + A+ S+ F + L + I + Sbjct: 89 MTANLLKAGAFFYLEKPFNLEELETHVKRGLEHQALQSKSFRSKPCIKNRALLNNIIGES 148 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 + E IEKVA S + +L+ G +G GK +AR I +L + FV +NCA + Sbjct: 149 EKMLSLFEMIEKVAT-SDSTVLIQGESGTGKELVARAIHDLSNRSDKN---FVALNCAAI 204 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 + S LFGHVKG+FTGA SR G A+ G LFLDEIG++ A+ Q LL+ ++ + Sbjct: 205 PDELLESELFGHVKGSFTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRE 264 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 P GS R D ++IA T ++L +VA +FREDLY R+++ LP LR+R D+ Sbjct: 265 LEPVGSTRSKKVDVRIIAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVPL 324 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 L+ +E+ V+ F+ + W GN REL V R+ T+G Sbjct: 325 LLNSFLEKFNRSKQRKVQGFDKQVMEIL------SNYDWPGNVRELENLVERLVIIKTTG 378 Query: 430 RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA 489 I++ + ++ R L + + ++ ++ Sbjct: 379 VISIHDLPEKYRGGRTTTVLHGEP--MTLPDDGFCLNSAVEEFENRLILQALEKSGGNKK 436 Query: 490 AGRQLFDVSRQGK 502 +L ++ R Sbjct: 437 EAAELLNLKRTTL 449 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 180/381 (47%), Gaps = 22/381 (5%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFNRMIEQIEKVAI 205 +P E+ I ++ I R + + + + +P F R+++ ++ V Sbjct: 103 KPFDIDELDITVSKALQFRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSV-R 161 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 +S A ILL G +G GK +AR I + ++ FV VNCA + S +FGH KG Sbjct: 162 ESNATILLTGESGTGKEMVARAIH---KHGNRADKPFVAVNCAAIPEGLLESEMFGHRKG 218 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA R G + A+ G LFLDE+G++ QA +L+A++E+ P G R+ D + Sbjct: 219 AFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRERKVDVR 278 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T ++L + VA +FREDLY R+N++ LP LR+R EDI + + G Sbjct: 279 VIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSLGATAGK 338 Query: 386 SVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + F+ EA +A ++A W GN REL V R AT I + + + Sbjct: 339 RISGFSPEALQAMASYA------WPGNIRELQNCVERATIVATGQVIEEKDLPGYLFGPQ 392 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 ES +A++ ++ ++ +++A +Q+ + AA QL +S + Sbjct: 393 AQGTESS-AAISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQAAAAQLIGISER---- 447 Query: 505 VNDADRLRKYLARFGLTWEAV 525 L + G+ + + Sbjct: 448 -----SFWYRLKKLGIQVDKI 463 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 436 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 153/337 (45%), Gaps = 26/337 (7%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 + ++ + E IEKVA K I++ G +G GK + R + + R FV+ Sbjct: 283 EMIGQSNSMKELYELIEKVADK-NVNIMVTGESGTGKELVVRALHYGGERR---DNPFVK 338 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNCA + D S LFGH KGAFTGA + R G A+ G LFLDEIG++ QA L+ Sbjct: 339 VNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSIQAKFLR 398 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 I+++ F G ++ + D ++I T +DL++ V EG+FREDLY R+N T +P LR+R Sbjct: 399 IIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYVPPLRER 458 Query: 365 QEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +EDI + + ++ + + + E A + + W GN REL ++ R Sbjct: 459 KEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEY------DWPGNVRELENAMERAI 512 Query: 424 TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQ 483 I L+ + I + + ES+ + M+ E +I + Sbjct: 513 ILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEI------TIRNMEREIIIEALEK 566 Query: 484 AKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + +SR+ L + F + Sbjct: 567 CDWNRTKTSKSLGISRR---------TLYNKMKEFNI 594 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 109/375 (29%), Positives = 166/375 (44%), Gaps = 31/375 (8%) Query: 157 IDLDLSRYNAIAS----RFAEERQQTLDFLKSG-----IATRNPHFNRMIEQIEKVAIKS 207 +DLD+ R + R A E + L G I ++P + I VA + Sbjct: 105 LDLDVMRLTVERALDHLRLARENENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVA-PT 163 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 A +L+ G +G GK +A+ + + G V VNCA L S LFGH KGAF Sbjct: 164 EATVLVTGESGTGKELVAKALHAGSP---RAGGPMVAVNCAALNETLLESELFGHEKGAF 220 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA REG +A+ G +FLDEIGE+ QA LL+ I+E+ G DR V D +++ Sbjct: 221 TGAERRREGRFMAADKGSIFLDEIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRIL 280 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T RDL++ V G+FREDLY R+N+ ++P LR+R +DI + + R A + Sbjct: 281 AATNRDLKKEVEAGRFREDLYYRLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRI 340 Query: 388 R-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + F A L + W GN REL +V R + +T + R Sbjct: 341 KGFTPAAMDHLL------RCPWPGNVRELENAVERAVILSVGEYVTERELPLSAMREAGG 394 Query: 447 WQESRPSALTALLGAEAENID--LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 + A + + D ++ E ++A R + ++ ++R Sbjct: 395 NGAPGGAGGGAPAPGDMAGLAGMALDDVEREVILATLRDTGGNKSEAARVLGITRA---- 450 Query: 505 VNDADRLRKYLARFG 519 L K L ++G Sbjct: 451 -----TLHKKLKKYG 460 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 107/385 (27%), Positives = 172/385 (44%), Gaps = 26/385 (6%) Query: 145 KEQPRGPGEVTIIDLD-LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P E+ ++ + L R + +++ F + I ++ + + IEKV Sbjct: 126 ITKPFKNEEIRLVVENALERMDLRRENLQLKKELGQRFSFANIIGKSKVMQGVYDLIEKV 185 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 S+ +L+ G +G GK +AR I + FV + C + + S LFGH Sbjct: 186 -SASKVNVLITGESGTGKELVARAIHYNSDRHDR---PFVAIYCGAIPENLLESELFGHE 241 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA + ++GL A+GG LFLDEI EL Q LL+ I+E F G R + D Sbjct: 242 KGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVGGTRDLKVD 301 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +L+A T +DL Q V E +FREDLY R+N+ LP LR R+EDI + + +++ Sbjct: 302 VRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHFLQKLTP-- 359 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL 443 G S R +L + W GN REL +V R G IT D + + + Sbjct: 360 GFSTTIPDGVMRRFLDY------HWPGNIRELENTVERCVVLGGKGEITEDSLPPHMLCI 413 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 + LT L + D ++ + ++ + + +L ++ Sbjct: 414 SGTGDQ----QLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAELLHIT----- 464 Query: 504 SVNDADRLRKYLARFGLTWEAVQDQ 528 +R LA+FG+ E ++ Sbjct: 465 ----FRSIRYRLAKFGIEAEGGDER 485 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 176/400 (44%), Gaps = 35/400 (8%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS----- 184 R+ L++ + I L N + EE+ + S Sbjct: 704 RHRDLHLLKGISDQVAVAVANILADEKIGQQLKEINGYKEKLEEEKLYLQQEISSVYTHT 763 Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 I P R+ + +V+ ++ +L+ G TG GK +AR I +++ V+ Sbjct: 764 DIIGAGPEMQRVFHMLSQVSFA-QSTVLILGETGTGKELIARAIHNGSPRKNKL---MVK 819 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNCA L + S LFGH +G+FTGA E R G AN G LFLDEIGE+ D Q LL+ Sbjct: 820 VNCAALPANLIESELFGHERGSFTGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLR 879 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 AI+E+ G + +D ++IA T R+L++ VAEG+FR DLY R+N++ LP LR R Sbjct: 880 AIQEREIERIGGKSTIKTDVRIIAATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDR 939 Query: 365 QEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +EDI + +ER A TG +++ ++ A + A+ W GN REL + R Sbjct: 940 KEDISLLAAHFIERFARSTGRKNIKLSSTAMKQLTAY------NWPGNVRELEHVLERSI 993 Query: 424 TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQ 483 I R S+P + + E + D M+ ++++ + + Sbjct: 994 LLTQGNII------------REIHLSSQPKSEAKVR-QEEDFSRTLDEMERDYILGVLNK 1040 Query: 484 AKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 K ++F + L + + G+ E Sbjct: 1041 CKG------KIFGPGGAAEILGLHVSTLNHRIRKLGIQKE 1074 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 111/395 (28%), Positives = 175/395 (44%), Gaps = 25/395 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIAS----RFAEERQQTLDFLKSGIATRN 190 +++ +P EV ++ R +AS R Q + GI + Sbjct: 94 EALKTGAFDYITKPFDQNEVRVVVKKALRTRDLASADATRDVSAAQPRGGSDRFGIIGES 153 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 P + +E+VA + +L++G +G GK +AR + E R + F++VNCA + Sbjct: 154 PPIQELYAILERVA-DTPTTVLISGESGTGKELVARALHENSGRRDR---PFIKVNCAAI 209 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 D S LFG+ +GAFTGA S+ G A+GG LFLDEIGE+ + Q LL+ ++E Sbjct: 210 PKDLMESELFGYERGAFTGAVASKPGRFELASGGTLFLDEIGEIPNEMQVKLLRVLQESE 269 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 F G + + D +L+A T RDL++ +A G FREDL+ R+N+ LP LR R+ DI Sbjct: 270 FERVGGIKTIHVDVRLVAATNRDLKREIAAGTFREDLFYRLNVVPIALPALRDRRSDIPH 329 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 + V + + S+ EA + A W GN REL V R FA Sbjct: 330 LCAHFVAKFNARLKKSIESIEPEALERLASHA------WPGNIRELENVVERALLFADGA 383 Query: 430 RITLDVVEDEIN----------RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 RI LD + +EI +A + G + + +++ + + Sbjct: 384 RIRLDDLPEEIRGGATSAPGAALPLAAAAADTSAAPSTPDGLKEQVKAAMSKLERDLIER 443 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 +Q +L +SR+G LR+ Sbjct: 444 ALKQTHGNVTHAARLLKISRKGLQLKMKELNLRER 478 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 162/342 (47%), Gaps = 19/342 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I ++ R++ I+K+ K+ L+ G +G GK +A+ I Q + F+ V Sbjct: 2 IIGQSIQIQRILTFIDKL-SKTDTTALIMGESGTGKELVAKMIH---QKSSRAEKPFIPV 57 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + S LFGH KGAFTGA+ R G AN G +FLDEIG++ Q +L+ Sbjct: 58 NCAAIPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRV 117 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 I+EKTF G R + + ++IA T +DL V EG+FREDL+ R+N+ +P LR+R+ Sbjct: 118 IQEKTFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERK 177 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI +Y + + + G S++ E + +L + TW GN REL + R+ Sbjct: 178 EDIPLLCEYFINKFSHKFGYSLQIKPEVMQIFLNY------TWPGNVRELENLIERLYVL 231 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 G I + + + I ++Q+ + + ++ + + ++ Sbjct: 232 NEGGNINIKDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHG 291 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + + + +++R L + + R + +D Sbjct: 292 WIKSRAAKYLNINR---------TTLIEKMKRLNIKDNENED 324 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 123/412 (29%), Positives = 181/412 (43%), Gaps = 26/412 (6%) Query: 114 TGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE 173 T I + AR LP +P E+ + + Y A+ R E Sbjct: 73 TDPEQVAIVYAQSDAARTLPHD----ERLIFLPKPLNLDELESVVMRALEYQALKVRMPE 128 Query: 174 ER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 + + FL S I R+ + E IEKVA S A +L+ G +G GK AR I +L Sbjct: 129 QPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESS-ATVLIQGESGTGKELAARAIHQLS 187 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIG 292 + FV VNCA + D S LFGHVKG+FTGA +R G A+ G LFLDEIG Sbjct: 188 SRSSKN---FVPVNCAAIPDDLLESELFGHVKGSFTGAYANRIGRFEMADKGTLFLDEIG 244 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 ++ A Q LL+ ++ K F P GS R D ++IA + ++L + VA FREDLY R++ Sbjct: 245 DMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVATRDFREDLYYRLS 304 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGN 411 + T+P LR R+EDI +++ + V+ F EA + W GN Sbjct: 305 VIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVKGFTREALEMLCNY------DWPGN 358 Query: 412 FRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI----- 466 REL V RM T SG IT+D + ++ R + + +G E Sbjct: 359 VRELENLVERMITMKESGFITVDDLPEKYLAPRTVVAPPLSVSGSVPVGKELPPEGICLN 418 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 D + ++ + L ++ R ++L+K +F Sbjct: 419 SAVDAFENGLIMQALHRTGGNKKEAAALLNLKRT-----TLIEKLKKKNLQF 465 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 168/359 (46%), Gaps = 23/359 (6%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 P + + L LS A +R +E + G+ +P ++ I VA S A Sbjct: 107 PLDFDKLQLTLSEALA-HTRLSESPVTETPAAQFGMVGDSPAMRALLNNITLVA-PSDAT 164 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L++G +G GK +AR + + V +NCA L S LFGH KGAFTGA Sbjct: 165 VLIHGESGTGKELVARALHASSARSRR---PLVILNCAALNESLLESELFGHEKGAFTGA 221 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + REG A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S D +LIA T Sbjct: 222 DKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAAT 281 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-F 389 RDL + V+ G+FR+DLY R+N+ T +P LR R+EDI P Y ++R+A +V+ F Sbjct: 282 HRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAERNRKAVQGF 341 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 +A + +A W GN REL +V R T I+ + I Sbjct: 342 TPQAMDLLIHYA------WPGNIRELENAVERAVVLLTGEYISERELPLAITGTPVADAP 395 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 ++ L+ ++ E ++A + + ++R+ + Sbjct: 396 HGDDSIQPLV-----------EVEKEAILAALERTGGNKTEAARRLGITRKTLLAKLSR 443 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 89/367 (24%), Positives = 161/367 (43%), Gaps = 21/367 (5%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 II + + +A +Q + I + + ++EKV + + + IL+ Sbjct: 125 VIIAKAVEKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKV-LNTDSTILIL 183 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ I H+ FV +NC + + S LFGHV+GAFTGA + Sbjct: 184 GESGTGKELVAKAIHY---NGHRREKPFVAINCGAIPAELLESELFGHVRGAFTGAVADK 240 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G + A+ G +FLDEIG + Q LL+ ++E+ GS +++ D ++I+ T +L Sbjct: 241 TGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNL 300 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEA 393 + V +G+FR DLY R+N+ LP LR+R+EDI Y +++ + + A Sbjct: 301 EEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGA 360 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 + W GN REL + R T S I + I+ ++ + Sbjct: 361 MNCLENY------HWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQ-I 413 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + L + + ++ ++ + + + + A L ++ R L + Sbjct: 414 SCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKR---------TTLVE 464 Query: 514 YLARFGL 520 + R G+ Sbjct: 465 KIKRLGI 471 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 107/383 (27%), Positives = 176/383 (45%), Gaps = 35/383 (9%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS-----GIATRNPHFNRMIEQIEKVAI 205 P ++ L ++R + AS EE D L+ + + + + IEKVA Sbjct: 116 PMRNDLVTLTVNRALSYAS-LQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEKVA- 173 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 KS + +++ G +G GK +AR I ++ + + VNC + D S LFGH KG Sbjct: 174 KSDSTVIIYGESGTGKELVARAIHFNS---NRNNFPLIPVNCGAIPEDLLESELFGHEKG 230 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA +R G A GG +FLDEIG++ Q +L+ I+EK F G + +++D + Sbjct: 231 AFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINADVR 290 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T ++L V E +FREDL+ RIN+ LP LR+R DI ++ +++ A Sbjct: 291 IIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQSKKK 350 Query: 386 SV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 V RF EA L + W GN REL + + G I L+ + +I + + Sbjct: 351 EVTRFTPEAIACMLHY------PWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIRQFK 404 Query: 445 YNWQESRPSALTALLGAEAENIDLFD---RMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 Q + + E ID D + + ++ + + +L +++R Sbjct: 405 KETQSFKEYQI------PEEGIDFNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNR-- 456 Query: 502 KASVNDADRLRKYLARFGLTWEA 524 L + L R ++ E+ Sbjct: 457 -------TTLVEKLKRLNISSES 472 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 107/380 (28%), Positives = 177/380 (46%), Gaps = 24/380 (6%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMIEQIEKVAI 205 +P E+ +I + ++ Q + G I T +P + + K+A+ Sbjct: 105 KPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAKIAL 164 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 S+A +L++G +G GK +AR I + + G F++VNCA L S LFGH KG Sbjct: 165 -SQASVLISGESGTGKELIARAIHYNSR---RAKGPFIKVNCAALPESLLESELFGHEKG 220 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA+ R+GL AN G L LDEIGE+ QA LL+ ++E+ F G + + D + Sbjct: 221 AFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIR 280 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T RDL+ +V EG FREDL+ R+N+ LP LR R+EDI ++ +++ +S Sbjct: 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQR 340 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + +A + +W GN RELS + R + I + + +I + Sbjct: 341 DIIDIDP-----MAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVC 395 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 N E + + + E + R++ ++ + Q + + +SR+ Sbjct: 396 NAGEVKTAPVG-----ERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRA---- 446 Query: 506 NDADRLRKYLARFGLTWEAV 525 L L +G+ V Sbjct: 447 -----LMYKLQEYGIDPADV 461 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 97/381 (25%), Positives = 164/381 (43%), Gaps = 36/381 (9%) Query: 150 GPGEVTIIDLDLSRYNAIASRFA---------EERQQTLDFLKSGIATRNPHFNRMIEQI 200 G + + DL + + R + Q+ I +P + + I Sbjct: 97 GAFDYIVKPFDLDEFLDLIQRAVAQSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDI 156 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 +VA S A +L+ G +G GK +AR I R+ F++VNCA L S LF Sbjct: 157 GRVA-DSNATVLIQGESGTGKELVARAIHYNSSRRN---NPFIKVNCANLPDSLLESELF 212 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 G+ KGAFTGA + G A+ G +F DEIGE+ QA LL+AI+EK F G + + Sbjct: 213 GYEKGAFTGASSLKVGRFELAHEGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTI 272 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 + +++A T R L+Q V EG+FREDL+ R+N+ +P LR R+EDI + + + ++ Sbjct: 273 KVNVRILAATNRKLKQSVREGEFREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYN 332 Query: 381 SLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 ++ F+ EA + + + W GN REL V R A I + + Sbjct: 333 KEFNKEIKGFSKEAIKLLIGY------DWPGNVRELENVVERSIIMARGAIIVPEDI--- 383 Query: 440 INRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSR 499 + S+ +L + ++ + ++ + ++ ++R Sbjct: 384 ----QLGATVSQQPTELEILDENLSLKQIISDVERKVILKALEENNWCRTTVAKVLKINR 439 Query: 500 QGKASVNDADRLRKYLARFGL 520 + L + G+ Sbjct: 440 R---------SLYAKMKELGI 451 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 434 bits (1116), Expect = e-120, Method: Composition-based stats. Identities = 107/379 (28%), Positives = 175/379 (46%), Gaps = 40/379 (10%) Query: 149 RGPGEVTIIDLDLSRYNAIASR------FAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 +G ++ I + +E + L + I +P +++E +K Sbjct: 95 KGAFHYITKPINFEELKIIIDQALEVSDLKKELNELKSLLSTDIIAESPQMKQVLETAKK 154 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 +A +L+ G +G GK +A I + + + F+ +NC + + S LFG+ Sbjct: 155 IA-PFDTTVLITGESGTGKEMIANFIHKNSLRKER---PFIAINCGAIPSELLESELFGY 210 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA ++GL+ A GG LFLDEIGEL D Q LL+ ++E P GS+R Sbjct: 211 KKGAFTGANTDKKGLIEEAEGGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKI 270 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D + IA T RDL+++V EGKFREDLY RIN+ +P LR+R+EDI P Y + + S Sbjct: 271 DVRFIAATNRDLKKMVEEGKFREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSR 330 Query: 383 TGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 G R + +AR L + ++GN REL + R IT + ++ Sbjct: 331 YGIPKKRLSEKAREKLLNY------DYKGNVRELENIIERAVLTTEGEEIT--DIPVTVS 382 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 + QE +P E F+ L++++ F++S+ Sbjct: 383 KRYILSQELKPF---------KEAKKEFEESYLKNLLEKTD------------FNISKAS 421 Query: 502 KASVNDADRLRKYLARFGL 520 K + ++ + + R+G+ Sbjct: 422 KIAGITRAQIYRMIKRYGI 440 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 94/341 (27%), Positives = 150/341 (43%), Gaps = 18/341 (5%) Query: 172 AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL 231 + + + + + IEKVA K+ A +L+ G +G GK +AR I Sbjct: 415 LRQELKAFQGKFGQLVGNSAAMQEVYRLIEKVA-KTDATVLIRGESGTGKELVARAIHYH 473 Query: 232 KQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEI 291 + FV +NCA L S LFGH +GAFTGA +++GL AN G +FLDEI Sbjct: 474 SRRSE---APFVSINCAALPETLLESELFGHARGAFTGAVTAKKGLFEEANEGTIFLDEI 530 Query: 292 GELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI 351 G++ Q+ LL+ ++E F G R + +++A T RDL + V +G FR +L R+ Sbjct: 531 GDISLGLQSKLLRVLQEGEFLRVGETRPTRVNVRVLAATNRDLEKAVKDGAFRPELLYRL 590 Query: 352 NLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRG 410 N+ T LP LR+R++DI + +E+ G V F EA A + +A W G Sbjct: 591 NVITIWLPPLRERRDDIPLLARHFLEKSCQRLGKEVNGFTHEAMDALI------RADWPG 644 Query: 411 NFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 N REL + R S RI L + + + + + A A Sbjct: 645 NVRELENVIERAVILTESKRIELGDLPRQFRNMAAGASGWAFTRGMSFKEAVAAYESRL- 703 Query: 471 RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 ++ +++ + A ++ + R + L Sbjct: 704 ------ILQALEESQGVQARAAEILGLKRSTLNEMIKRYNL 738 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 96/394 (24%), Positives = 174/394 (44%), Gaps = 21/394 (5%) Query: 129 ARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS--GI 186 + + ++ +P E+ + + + S A R++ S Sbjct: 84 TTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSIKMQRLVSEVAILREELDQETDSVDSF 143 Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 ++ H + + I KV + S +L+ G +G GK +AR I + + F+++N Sbjct: 144 IGQSRHMQDVFKTIGKV-VDSDITVLIQGESGTGKEVVARTIHSNSRRSSR---PFIKIN 199 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 CAT+ S LFGH KG+FTGA + G A+ G++FLDEIGEL QA LL+ + Sbjct: 200 CATIPEQLMESELFGHEKGSFTGAVSQKAGKFEIAHNGIVFLDEIGELPLHTQAKLLRVL 259 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +EK F G + + D +++A T R+L +V EGKFREDLY R+N+ LP LR+R+E Sbjct: 260 QEKEFERVGGTKSIEVDVRILAATNRNLEDMVQEGKFREDLYYRLNVVNVKLPPLRERKE 319 Query: 367 DIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 DI ++Y V++ A ++ ++ A + + W GN RE+ + A Sbjct: 320 DISLLINYFVKKFARKYNKNISGISQE-----AMIFAEKYAWPGNVREIKNVCEQAVVMA 374 Query: 427 TSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKS 486 + + LD + I + + ++ + D+ ++ + ++ + Sbjct: 375 RNSVLMLDDMP-LIGNGNGFLEFKNNAKISLDTNDKRSLKDIVAEVEKQVILKSLNENNW 433 Query: 487 LSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + ++R+ L + + L Sbjct: 434 NRQNTAKALGLNRR---------SLYAKMKEYDL 458 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 167/346 (48%), Gaps = 35/346 (10%) Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 Q KS + T++ +++ + VA + A +LL G +G GK+ LA+ I R Sbjct: 220 QEAASNKSRLITKSSLMVYVLDIAKTVA-DTTANVLLEGESGTGKNVLAKYIHNQSSRRD 278 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 + FV++NCA + + S LFG+VKGAFTGA + + G + A+GG LFLDEIGEL Sbjct: 279 K---PFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPT 335 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 Q+ LL I+EK F G + D ++IA T +DL QLV EGKFREDLY R+ + + Sbjct: 336 YLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISI 395 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 +P LR+R+EDI ++Y ++ ++ ++ + EA R L + + GN REL Sbjct: 396 KVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNY------DYPGNIREL 449 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 + R A I + + DEI + E ID + + Sbjct: 450 ENIIERAVILAKGKFIEVSDLPDEIVY----------NTKILTQNDLDEEID-----EKQ 494 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 ++ + + ++ ++ R L + L ++GL Sbjct: 495 KILRVLESVNWNKSKAAKILNIDRV---------TLWRKLKKYGLV 531 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 161/370 (43%), Gaps = 22/370 (5%) Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 R AI + G + + EQI +VA S +LL G +G GK Sbjct: 172 ERVAAIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVA-PSSTTVLLYGESGTGK 230 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 A I A + G F+ +NCA L + S LFGH KGAFTGA R+G A Sbjct: 231 ELAAHAIH---SAGKRSKGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELA 287 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDE+GEL QA LL+ ++E+ F G +S D ++I T RDL ++V EG Sbjct: 288 DGGTLFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEG 347 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAF 400 FR DLY R+N++ +P LR+RQ DI+P Y V+++A+ G S +R + Sbjct: 348 TFRRDLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDML--- 404 Query: 401 ATSPQATWRGNFRELSASVTRMATF-ATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + TW GN REL + R G I + E++ + + Sbjct: 405 ---QRYTWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPY 461 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 A D D ++ + + K Q ++ + A + + G Sbjct: 462 AASGTLQDRLDELERACITDALARHKGHMGHAAQALGLTERVMAL---------RMKKHG 512 Query: 520 LTWEAVQDQH 529 + ++ QH Sbjct: 513 INYKDF-RQH 521 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 113/405 (27%), Positives = 178/405 (43%), Gaps = 23/405 (5%) Query: 117 HVAQICWFLLAEARYLPA-RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIA-SRFAEE 174 C F+ A A I+ +P ++ I + + + + Sbjct: 76 PFPPACLFMTAYGSVENAVEAIKMGAYDYIPKPLDLEKLEITLKRIYQSRKVEVENLQLK 135 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 RQ + I + + E+I++VA S+A +LL G +G GK +A I +L Sbjct: 136 RQLNWKYGLEKIIGNSAAMKAVFEKIKQVA-SSKATVLLEGESGTGKELVAHAIHQLSPR 194 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 ++ FV V+CA L S LFGH KGAFTGA E R G A G LFLDEIGE+ Sbjct: 195 KNF---PFVVVHCAALSPQLLESELFGHEKGAFTGAIERRIGRFEEAARGTLFLDEIGEI 251 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+A+ EKT GS++ V+ D ++IA T ++L ++V EGKFREDL+ R+N+ Sbjct: 252 DLPTQVKLLRALGEKTIQRVGSNKVVAVDVRVIAATNKNLEKMVEEGKFREDLFFRLNVV 311 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFR 413 +P LR+R+EDI + A+ G + R + EA + L + W GN R Sbjct: 312 RIVMPPLRERKEDIPLLAQAFLAEFAAENGKKIDRLSPEAMKILLEY------DWPGNVR 365 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD--R 471 EL ++ I + + I R L+A + E+ D F+ Sbjct: 366 ELKMAIEHGVVLCQGEEIRPRDLPERIRIPR--------PLLSAPISVESSEPDCFNLKE 417 Query: 472 MQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 + ++ R + + + +SR+ L ++ Sbjct: 418 AEKRLILHALRVCQGKKTSAAKKLGISRKTLQRKIKQFELTDWVK 462 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 173/384 (45%), Gaps = 29/384 (7%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 ++ +P + I L+ S + + RQQ K I T+N ++ Sbjct: 92 MKQGAFYYIAKPFKLDIIRKIILEASEKVKLKKEVKQLRQQLDFHEKVNIITQNSKMLKL 151 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 +E ++A + +L+ G +G GK AR I + G F+ VNC + Sbjct: 152 LEIARQIA-PTDCNVLITGESGTGKELFARYIHLNSLRKK---GPFLAVNCGAFSEELLS 207 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 + LFGH KGAFTGA ++GL+ A+ G LFLDEI E+ QA LL+ I+E+ F+ G+ Sbjct: 208 NELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQEREFFRLGA 267 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + D + IA T RD+++ V GKFREDLY R+N+ +P LR+R++DI + Y Sbjct: 268 TEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDIPLLVAYFS 327 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 ++++ L + +E A + GN REL + R S +I ++ + Sbjct: 328 KKYSLLMKKEITGVSEE-----AINLLVNYEYPGNVRELENIIERAVVLCNSSQIDVEHL 382 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 ++ L+ + +L + ++ E++ I R+ + Q+ Sbjct: 383 PQDLKELKIEVFTKKEGKFMSL-----------EELEKEYIKWILREVGNNKTVAAQILG 431 Query: 497 VSRQGKASVNDADRLRKYLARFGL 520 + R L + L +G+ Sbjct: 432 IDRV---------SLWRKLKNYGI 446 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 107/397 (26%), Positives = 172/397 (43%), Gaps = 45/397 (11%) Query: 138 QSSPPRKKEQPR-GPGEVTIIDLDLSRYNAIASRFAEERQQTLD-----------FLKSG 185 Q S + + G + L + + R E+R+ + + S Sbjct: 85 QGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALEKRKLSRENFHLKTLVHDVQKPSS 144 Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + +P + + I+K A S +L+ G +G GK A+ I + + + FV V Sbjct: 145 MIGNSPAIKAVFKMIDKTA-PSDVTVLIQGESGTGKELAAKMIHQYSK---RADKPFVIV 200 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCATL+ S LFGHVKGAFTGA ESR GL A GG LFLDEIGEL + QA LL+ Sbjct: 201 NCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAEGGTLFLDEIGELTVNTQAKLLRV 260 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 I+ G +R ++ D ++IA T ++L V EG+FREDLY R+N+ T LP LR+R+ Sbjct: 261 IQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGRFREDLYFRLNVITLRLPSLRERK 320 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 +D+ + + +++ ++ + EA A + W GN REL ++ R Sbjct: 321 DDLTALIQHFLQKFC-KGERTMDMHPEALHAMTLY------DWPGNIRELENTIERTVVL 373 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 A I+++ + D I Y ++ H+I + ++ Sbjct: 374 ADGNIISIEELPDNIRGRTYEHY-------------GKNGEIALSEVEKNHIIQVLKEKN 420 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + +S L + + + Sbjct: 421 WHKPLAAKTLGIS---------LKTLYNKMKMYNIDL 448 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 97/316 (30%), Positives = 156/316 (49%), Gaps = 22/316 (6%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 + I + + I+K+A + A +L+ G +G GK +A I Q + + F+ Sbjct: 241 ANIIGNAKSMRVVFKMIDKIA-PTNATVLILGESGVGKELVANAIHYKSQ---RAASPFI 296 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 + NCA L S LFGH +GAFTGA +R+G AN G +FLDE+GEL QA LL Sbjct: 297 KFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQAKLL 356 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++EK F G ++ + +D ++IA T R+L + + EGKFREDL+ R+N++ T+P LR+ Sbjct: 357 RILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPPLRE 416 Query: 364 RQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 R+ DI DY VE++ + G V R +T A + + W GN REL V R Sbjct: 417 RKSDILLLADYFVEKYNQMNGKGVRRISTTAIDMLMRY------HWPGNVRELENCVERA 470 Query: 423 ATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICR 482 + G I + + ++ S+ T G + +D + E ++ + Sbjct: 471 VILSDDGVIHGYHLPPTL--------QTAESSGTPCAGPLQQRLDALE---YELIVEALK 519 Query: 483 QAKSLSAAGRQLFDVS 498 K + ++ Sbjct: 520 NTKGNMSKAAMELGLT 535 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 177/388 (45%), Gaps = 23/388 (5%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 I+ E+P P ++ I + S A D ++S I + + Sbjct: 99 IKEGAYDYVEKPVQPQQLAEIVRKSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEV 158 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 I ++ K +L+ G G GK +AR I + SGAFV +NC + + Sbjct: 159 FNLIYRL-CKVDTTVLVRGENGTGKELVARAIHFNSPRK---SGAFVAINCGAIPENLME 214 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGH KGAFTGA E + G + AN G LFLDEIGEL D Q LL+ ++E+ F P GS Sbjct: 215 SELFGHEKGAFTGAVERKIGKFQLANNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGS 274 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 +R+V + ++IA T R+L +++ EG+FREDL+ R+N+ LP LR+R +DIE + Sbjct: 275 NREVKTTTRIIAATNRNLEKMMEEGEFREDLFYRLNVMPIFLPPLRERADDIEALAGNFI 334 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 ++ + G + EA ++ W GN REL + R S +IT+D Sbjct: 335 KKFSKQHGRQITAITPEALDMLKSY------RWPGNIRELENIIERSFIVENSHQITVDS 388 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + D I + + + + + M+ E +++ + Sbjct: 389 LPDSIKLTPKDGADK---TASVGYSGPLDFDAFKEEMEKEFIVSALKANNGR-------- 437 Query: 496 DVSRQGKASVNDADRLRKYLARFGLTWE 523 +++ + + L + + ++G+ + Sbjct: 438 -INQTVAQANIPKNTLLRKIRKYGINVK 464 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 106/412 (25%), Positives = 184/412 (44%), Gaps = 33/412 (8%) Query: 114 TGTHVAQICWFLLAEARYLPA-RLIQSSPPRKKEQPRGPGEVTIIDLDLS--RYNAIASR 170 + A A I+ +P EV ++ + + R N I Sbjct: 68 PEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLD-KEVLLVTIRKAEERMNLIKEN 126 Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 ++ F GI ++ ++++ ++K A + A +L+ G +G GK +AR I Sbjct: 127 LMLRKELYEKFKMDGIIGKSRKMLQVLDIVKK-ATPTNATVLIYGESGTGKELIARAIHY 185 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 + + F+ +NCA + S LFG+ GAFTGA + GL+ SA+ G LFLDE Sbjct: 186 NSPRKDK---PFIAINCAAIPDTLIESELFGYEPGAFTGANTRKIGLIESADKGTLFLDE 242 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 I E+ Q+ LL+ +++K GS D ++IA T ++L + V + KFREDLY R Sbjct: 243 IAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNKNLSEQVEKNKFREDLYYR 302 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTE-ARRAWLAFATSPQATWR 409 + + T +P LR+R+EDI + + +E+++ G V E A A L + +W Sbjct: 303 LKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEEKALEALLNY------SWP 356 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + + R +IT + ++DE+ + + E I+ + Sbjct: 357 GNIRELESVIERAIIICEKDKITFNDIQDELRVIT--------PKNLFDIDIPDEGIN-Y 407 Query: 470 DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++ E + ++ + A +L +S D L +FGL+ Sbjct: 408 EELEKELIKKALIKSNFVIAKAARLLGMS---------YDTFWYRLKKFGLS 450 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 174/379 (45%), Gaps = 30/379 (7%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + E+ ++ +L++ + +E ++ D + + R+ ++I +K+++ Sbjct: 229 KDITEIVQLNQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISV- 287 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 + A +LL G +G GK LAR I Q + F+ VNC + + S LFG+ GA Sbjct: 288 TEATVLLRGESGTGKELLARAIH---QNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGA 344 Query: 267 FTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 FTGA + G+ ANGG LFLDE+GE+ + QA LL+ ++E TFY G + V + + Sbjct: 345 FTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVR 404 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 ++A T R+L ++ +FREDLY R+N+ +P LR R+EDI + ++ Sbjct: 405 VLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDK 464 Query: 386 SV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 ++ + A+L + TW GN REL +V R+ I + + + R Sbjct: 465 NIKKIEPAVMTAFLDY------TWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNT 518 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 Y + P + L+ E + + ++ +Q + + ++ + R Sbjct: 519 YISLVTSPVSQGKLMNVAVE-------AEKQLILKTLQQVRGNRSEAARVLGIPRS---- 567 Query: 505 VNDADRLRKYLARFGLTWE 523 L L + G+ + Sbjct: 568 -----TLYYKLRQLGIPAK 581 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 171/355 (48%), Gaps = 27/355 (7%) Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 +A + E+ + L GI R+P F ++ I V+ + +L+ G +G GK +AR Sbjct: 317 VARKRVEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAA-PSSVLILGESGTGKELIAR 375 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I +++ + VNCA L + S LFGH KGAFTGA + R G A+GG + Sbjct: 376 CIHRQSPRKNK---PLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKFEMADGGTI 432 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIGEL + Q LL+ ++EK F G + + D ++IA T R+L + VAEG+FR D Sbjct: 433 FLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEVAEGRFRLD 492 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQ 405 LY R+N++ LP LR+R+EDI + V++ + ++ + +A +A ++ Sbjct: 493 LYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKALRSY----- 547 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 W GN RE+ + R T + ++ ++P T + A+ Sbjct: 548 -DWPGNIREMEHVMERSLLMTTGTI---------LKQIMLPKMAAQPVG-TTISSADGNR 596 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 I + M++EH++ + + K ++ V + L + + G+ Sbjct: 597 IKTLEEMEIEHILQVLKSCKG------KVCGVGGAAELLGLPPSTLNSKIRKLGI 645 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 108/427 (25%), Positives = 178/427 (41%), Gaps = 37/427 (8%) Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGE----VTIIDLD 160 ++ ++ + AE Y+ RL+ I ++D Sbjct: 159 QDKLAFFCVPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVD 218 Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 R R E +Q + I + + + KVA ++A +LL G +G G Sbjct: 219 KVRLETENRRLKSELKQRFRP--ANIIGNSKPMQEVYAMVHKVA-STKATVLLLGESGVG 275 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A + G F++ NCA L A S LFGH +GAFT A + +G Sbjct: 276 KELVASALHYNSPV---ADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQ 332 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG +FLDE+GEL QA LL+ ++E+TF G + V D ++IA T R+L ++VAE Sbjct: 333 ASGGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAE 392 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLA 399 G FREDL+ R+N++ T+P LR R D+ D+ V +++ G + R +T A ++ Sbjct: 393 GTFREDLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMS 452 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL + R A G I + + P+ Sbjct: 453 Y------HWPGNVRELENVIERSVILAEEGVIHGYDLPPSLQT---------PTETGTGF 497 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 E D ++ E ++ + + ++R+ + R G Sbjct: 498 SGTLE--DRVTAVEYEMIVEALKASNGNVGQAATTLGLTRRMLGL---------RMERHG 546 Query: 520 LTWEAVQ 526 LT++ + Sbjct: 547 LTYKTFR 553 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 430 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 111/507 (21%), Positives = 193/507 (38%), Gaps = 44/507 (8%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVE------IELHNPWDFEEVYACLHDF 95 + LL + E + E ++ +P ++ F Sbjct: 47 SSILLLENDSDELRTEIAHGLSEEEIRKGRFKEGEGITGAVLKTGDPIVVPDISREP-RF 105 Query: 96 ARGYEFQPEKED---YLIHITTGTHVAQICWFLLAEARYLPA--RLIQSSPPRKKEQPRG 150 + E+ T A+ L A+ P L + Sbjct: 106 LNRTGSRSERASRGKLAFLAVPLTFQARKVGVLSADCTIEPGSGNLDEELRVLTTISSII 165 Query: 151 PGEVTIIDLDLSRYNAIASR-FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 V + + + R E + G R+ ++ E + VA KSRA Sbjct: 166 AQAVILRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRIMQQISESVHLVA-KSRA 224 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G +G GK +A+ I + FV++NCA + S LFGH KGAFTG Sbjct: 225 TVLIMGESGTGKEVVAKAIHFNSPRNRR---PFVQINCAAIPESLLESELFGHEKGAFTG 281 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A SR G A+ G LFLDE+GE+ Q LL+ ++E+ G + + D ++IA Sbjct: 282 AHVSRPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVERVGGTKTIPVDVRIIAA 341 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T R+L + + + +FREDLY R+N+ LP LRQR+EDI +++ + R G S+ Sbjct: 342 TNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLVNHFLGRFNQENGRSMTI 401 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ- 448 + EA A + + W GN REL ++ R+ + I + V + Sbjct: 402 SPEAISALI------EHDWPGNVRELENTMERLVVMTQADSIDITDVRRTLALFPSTLPH 455 Query: 449 ----ESRPSALT-------ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 E +P++ +L G + ++ ++ + + + L + Sbjct: 456 RREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILDVLDRTGWIKTRAAALLGI 515 Query: 498 SRQGKASVNDADRLRKYLARFGLTWEA 524 + +L + ++G+ Sbjct: 516 T---------PRQLGYRMMKYGIDPSP 533 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 118/475 (24%), Positives = 208/475 (43%), Gaps = 53/475 (11%) Query: 63 IASVSPETEVVSVEIELHNPWDFE-EVYACLHDFAR-GYEFQPEKEDYLIHITTGTHVAQ 120 I +V E + ++ + W + E+ HD R EF+P+ + + Sbjct: 6 ILAVDDERDTCEALADMLSAWGHKVEIAFDGHDALRKANEFRPDVVLSDLAM----PETD 61 Query: 121 ICWFLL--------AEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFA 172 W L +L R + + G + + LD +R R Sbjct: 62 GLWLLRNLKEELPDCPVVFLTGR--GTIDAAVESIREGAYDFIVKPLDTARLKVCIDRAL 119 Query: 173 EE----------RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 E+ R++ S + ++ ++IE +EKVA S+A + ++G +G GK Sbjct: 120 EKKETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVA-PSKASVSISGESGTGKE 178 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 ++R + L R + F+ +NCA++ S LFGH +GAFTGA + R G+ A+ Sbjct: 179 VVSRAVHNLSLRRDK---PFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAH 235 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDE+GE+ + QA LL+ +EE G ++ D +++ T RDL+Q + G+ Sbjct: 236 GGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGR 295 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FREDLY R+N++ LP LR+R++D+ + + V++ +G V + EA + Sbjct: 296 FREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNY- 354 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL +V R IT + + ++ R +L Sbjct: 355 -----DWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLSL--- 406 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 D ++ E+++ ++ + A ++ VS + ++L +Y A Sbjct: 407 --------DAVEREYILGSLQRNGNNKARTAEVLGVSEK-----TLYNKLNRYAA 448 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 430 bits (1106), Expect = e-119, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 166/364 (45%), Gaps = 30/364 (8%) Query: 159 LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L +R A R E + + GI + + + IEK A+ S +L+ G +G Sbjct: 395 LKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAM-SDGNVLIQGESG 453 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGL 277 GK AR I L + + FV +NCA + + S LFG+ +GAFTGA+ + G Sbjct: 454 VGKEIAARTIHYLSE---RADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGK 510 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 + A+GG LFLDEIG++ Q LL+ I+ + F GS+ D ++IA T + L +L Sbjct: 511 IEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKL 570 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF-NTEARRA 396 V EG+FR DLY R+N++ +P LR+R++DI ++ + + + +EA Sbjct: 571 VKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNI 630 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 + + +W GN REL + R A I + + ++ + + R + +T Sbjct: 631 LMNY------SWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGE--RITKIT 682 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 A AE ++ + +I + A +L + R L + + Sbjct: 683 TFKEAVAE-------VEKKLIIEGLKATNYNKLACAKLLGIPRA---------TLYQKIK 726 Query: 517 RFGL 520 +G+ Sbjct: 727 EYGI 730 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 109/366 (29%), Positives = 173/366 (47%), Gaps = 30/366 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQ------TLDFLKSGIATRNPHFNRMIEQIEKV 203 G + I LD R + Q+ ++ +SG+ ++P +++ +I V Sbjct: 99 GALDYLIKPLDFDRLQETLEKSLAHAQEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMV 158 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A S A +L++G +G GK +AR + + V +NCA L S LFGH Sbjct: 159 A-PSDATVLIHGDSGTGKELVARALHASSARSDK---PLVTLNCAALNESLLESELFGHE 214 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA + REG A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S D Sbjct: 215 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVD 274 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +LIA T RDL Q + G+FR+DLY R+N+ T P LRQR+EDI ++ ++R A+ Sbjct: 275 VRLIAATHRDLAQEASAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARN 334 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 +V+ F +A + +A W GN REL ++ R T I+ + I Sbjct: 335 RKAVKGFTPQAMDLLIHYA------WPGNIRELENAIERAVVLLTGEYISERELPLAI-- 386 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 A A+ A+ I ++ E ++A + + ++R+ Sbjct: 387 -----------ANQAMPLMPAQAIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 Query: 503 ASVNDA 508 + Sbjct: 436 LAKLSR 441 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 95/327 (29%), Positives = 154/327 (47%), Gaps = 23/327 (7%) Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 G+ ++ +++ + VA SR+ +LL G +G GK +AR I L + G F++ Sbjct: 195 GVIGQSKQMQAVMDLVYHVA-PSRSTVLLRGESGTGKEVIARTIHYLSPRKE---GPFIK 250 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNC+ L S LFGH KGAFTGA R+G A+GG LFLDEIG++ Q LL+ Sbjct: 251 VNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLLR 310 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 ++E+ F G ++ + D ++I T ++L + V +G+FR DLY RIN+ + +LP LR+R Sbjct: 311 VLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRER 370 Query: 365 QEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMAT 424 +EDI D+ + + +R EA + + W GN REL + R AT Sbjct: 371 KEDIPLLADHILNKIGKELNRKLRITPEALKLLI------NCHWPGNVRELENCLERAAT 424 Query: 425 FATSGRITLDVV-------------EDEINRLRYNWQESRPSALTALLGAEAENIDLFDR 471 + + I V + E+ + S + + L Sbjct: 425 NSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLISD 484 Query: 472 MQLEHVIAICRQAKSLSAAGRQLFDVS 498 E +I + + A +L +++ Sbjct: 485 DPKEKIIQAMEKCGWVQAKAARLLNIT 511 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 117/502 (23%), Positives = 195/502 (38%), Gaps = 40/502 (7%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYA 90 + + E +D R L + + + + EV + + P Sbjct: 9 ILVVDDEQDNLDAFRFNFKRAFRLLCASSGEEALEILRDNEVAVIVTDQRMPR-----MT 63 Query: 91 CLHDFARGYEFQPEKEDYLIHITTG----THVAQICWFLLAEARYLPARLIQSSPPRKKE 146 L + E QP+ ++ T + + A+ ++ E Sbjct: 64 GLELLLKAAEIQPDAVGIILTAYTDLDVLVDAINLGQIYRYVTKPWEAKELRGILTHALE 123 Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + E + L Y ++ + F I + ++ ++E+VA Sbjct: 124 RYALLRENQRLMAQLREYTGYLNQ-----EIHGAFDFGNIIGDSAALGEVLSKVEQVA-P 177 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 + + +LL G TG GK +A I +Q FV VNCA L S LFGH KGA Sbjct: 178 TNSTVLLRGETGTGKELVAHAIHINSSRENQ---PFVRVNCAALAPGVLESELFGHEKGA 234 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA R G A+GG LFLDE G+L + Q LL+A++E+ F G + + D ++ Sbjct: 235 FTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGTQTIKVDVRV 294 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 I+ T RDL ++ G FREDLY R+N++ LP LR R ED+ + + + + A Sbjct: 295 ISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIAKFARSGMTR 354 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 A A TW GN REL + R A + D ++ Sbjct: 355 TPGVRGA-----ALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLDFGRRAQNAT 409 Query: 447 WQESRPSAL-------TALLGAEAENI-DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 PS + L+G E++ + + + +IA ++ + A+ ++ ++ Sbjct: 410 PVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIASAARMLGIN 469 Query: 499 RQGKASVNDADRLRKYLARFGL 520 R L + + GL Sbjct: 470 RS---------TLYYRMRKHGL 482 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 171/384 (44%), Gaps = 38/384 (9%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQ-----QTLDFLKSGIATRNPHFNRMIEQIEKVA 204 G I +D + E+ + + ++ I ++ + ++ VA Sbjct: 95 GAYHYLIKPVDTELLLNVIKEAIEKSKGIQKLEKIETPFPEIIGKSKTIQEIFYIMQMVA 154 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 S A +L+ G +G GK +AR I + + S F+ V+C T+ + S LFGH K Sbjct: 155 E-SNANVLITGESGTGKELVARAIHKNSLRK---SKPFIIVDCTTIPENLLESELFGHEK 210 Query: 265 GAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDF 324 GAFTGA E + GL+ AN G +FLDEIGEL Q LL+ ++EK GS +++ D Sbjct: 211 GAFTGATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDV 270 Query: 325 QLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG 384 ++I+ T +DL + + EG FREDLY R+N+ LP LR+R+EDI +++ + + + Sbjct: 271 RVISATNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENN 330 Query: 385 DSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL 443 + + E A + + W GN REL+ + R + SG I++ + I Sbjct: 331 KPIPQLEPEVMNALINYY------WPGNIRELANVIERAVVLSPSGLISIKHLPRRIQE- 383 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 W + + L ++ ++ ++ +SR+ Sbjct: 384 NTGWTIIKENTFNLL------------EVEKALILKALNSTGWNQTKAAEILGISRK--- 428 Query: 504 SVNDADRLRKYLARFGLTWEAVQD 527 +LR + G ++ ++ Sbjct: 429 ------QLRTKMKHHGFLTQSEEE 446 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 106/418 (25%), Positives = 178/418 (42%), Gaps = 36/418 (8%) Query: 116 THVAQICWFL---LAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL--DLSRYNAIASR 170 + + L AE Y+ RL++ + + L ++ R Sbjct: 144 VPIMRAQKVLGTIAAERVYMNPRLLKQDVELLTMIATMIAPLVELYLIENIERVRLENEN 203 Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 + F S I + + E I KVA ++A +L+ G +G GK +A I Sbjct: 204 RRLKHALKERFKPSNIIGNSKPMQEVYELIHKVA-STKATVLILGESGVGKELVANAIHY 262 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 A V NCA L + A S LFGH KG+FTGA +G A+GG +FLDE Sbjct: 263 NSPN---AEAALVTSNCAPLPENLAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDE 319 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 +GEL QA L++ ++ +TF G + V D ++IA T R+L ++V +G FREDLY R Sbjct: 320 VGELSPTVQAKLVRVLQNRTFERVGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYR 379 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWR 409 +N++ T+P LR+R D+ D+ V + G +V R +T A +++ W Sbjct: 380 LNVFPITVPPLRERGSDVIALADHFVSAFSRENGKNVKRISTPALNMLMSY------HWP 433 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + R + I + + ++ + TA E I Sbjct: 434 GNVRELENVMERAVILSDDDVIHSYNLPPSL--------QTSKESGTAFGLTLEEKIKAV 485 Query: 470 DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + E ++ + + + ++R+ L + R+G+++++ Sbjct: 486 EC---EMIVEALKNSSGHIGEAAKELGLARR---------MLGVRMERYGISYKSFSR 531 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 104/380 (27%), Positives = 175/380 (46%), Gaps = 25/380 (6%) Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ--QTLDFLKSGIATRNPHFNR 195 ++ R + + + +L + + ++ EE + S I R+ R Sbjct: 213 DNNIKRIVSISKDITDEEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMER 272 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 +IE + KVA + + IL+ G TG GK LA+ I + + G F+++NC + + Sbjct: 273 LIELVNKVA-PTESTILIYGETGVGKEVLAKYIHNIS----RSEGPFIKINCGAIPENLL 327 Query: 256 MSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 + LFG+ KGAFTGA+ E + GL+ A+ G L LDEI EL Q LL+ ++EK F Sbjct: 328 EAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRV 387 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G + + D ++IA + +DL++LV EGKFR+DLY R+N+ T+P LR+R +DI + Sbjct: 388 GGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYH 447 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + + G S + E ++ + W GN REL + R+ + + +IT Sbjct: 448 FLNMYNEKYGHSKQLTNEVMEIFMKY------PWPGNVRELENVIERIVIISENDQITKK 501 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + E+ L + L E L + ++ I C S ++ Sbjct: 502 DLPGEL--LNQEETNHSFGVHVSRLMPLKEASALVEYQLIKQAIEEC----GSSYKAAEV 555 Query: 495 FDVSRQGKASVNDADRLRKY 514 V + +L+KY Sbjct: 556 LGVDQS-----TIIRKLKKY 570 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 110/371 (29%), Positives = 172/371 (46%), Gaps = 37/371 (9%) Query: 170 RFAEERQQTLDFL-------KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 R EE + L + S I + + I +VA S +L+NG TG GK Sbjct: 167 RALEEENRRLRHMLGRSTVPDSEIIGHSRVMQEVFGLIAQVA-DSNTTVLINGETGTGKE 225 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR I + + G ++VNCA + S LFGH KGAFTGA +R G A+ Sbjct: 226 LVARAIHD---RSSRCKGPLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAH 282 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDE+GEL A QA LL+ I+EK F P G+ R VS D ++IA T R+L + VA G Sbjct: 283 GGTIFLDEVGELSAAAQAKLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGH 342 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFA 401 FR DLY R+N++ LP LR+R DI DY V ++ + G SV R + A+L+ Sbjct: 343 FRADLYYRLNVFPIYLPPLRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLS-- 400 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 +W GN REL + R AT I + + ++ A++ Sbjct: 401 ----HSWPGNVRELENCIERAVLLATGDSIETLHLPPSLQIRSREGEKKESGKFNAMI-- 454 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + + ++ +++ + ++ +++ ++ + +FG+ Sbjct: 455 --------ESQERAMIVDALKESHGNQSQAARILGTTKR---------IIQYKIQKFGID 497 Query: 522 WEAVQDQHSSS 532 +H+ S Sbjct: 498 PRRFNPKHAGS 508 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 165/352 (46%), Gaps = 24/352 (6%) Query: 148 PRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 + V +++ + R S+ E + S I + + ++E I +VA S Sbjct: 185 AQTVKRVQLVNQEQQRLEQENSQLRRELSEKYRV--SSILSNSSRMQEVLEMIHRVAA-S 241 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 A +LL G +G GKS +AR + + + +G F+ VNC+ L S LFGH +GAF Sbjct: 242 NATVLLRGESGTGKSMVARAVHHNSK---RAAGPFITVNCSALPETLLESELFGHERGAF 298 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA E+R+G A GG LFLDEIGEL Q LL ++++ F G R + D +LI Sbjct: 299 TGAHETRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQDREFQRVGGSRPLKCDVRLI 358 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 T +DL + VAEG FREDLY R+N++ LP LR+R+ DI ++ +E+ AS ++ Sbjct: 359 TATNKDLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTDILLLAEFFLEKFASENDKNI 418 Query: 388 -RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 R +T A Q W GN REL + R I + + + + Sbjct: 419 RRISTPAIDLL------TQYHWPGNVRELQNCLERAVLICDEDTIKSYHLPPTL-QSSDS 471 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 +E PS+ TA + + E +I ++ L + S Sbjct: 472 LREVSPSSFTA----------AVESFERELIIDALKKTDGNQTRAAALLETS 513 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 170/377 (45%), Gaps = 39/377 (10%) Query: 157 IDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 I+ L + N + +E+ Q + S + ++ ++ + IE+VA S + + Sbjct: 204 IEEQLQQINTYKQQLEDEKSYLQEQINTRYHHSEMVGQSSAIRQVFDLIEQVAA-SDSTV 262 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G TG GK +AR I L + + ++VNCA L + S LFGH KG+FTGA Sbjct: 263 LILGETGTGKELVARSIHNLSPRKDKL---MIKVNCAALPANLVESELFGHEKGSFTGAS 319 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 E R G A+ G LFLDEIGEL D Q LL+A++EK G + ++ ++IA T Sbjct: 320 ERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVRIIAATN 379 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT 391 R+L + V EG FR DLY R+N++ T+P LR R+EDI+ + ++ A TG V+ T Sbjct: 380 RNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQVKGMT 439 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 + T + W GN REL + R + I + + Sbjct: 440 KGV-----LKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLP-------------K 481 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDA 508 + L + I + +H++ I + K + +L + A Sbjct: 482 VEHMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIP---------A 532 Query: 509 DRLRKYLARFGLTWEAV 525 L + +F + E V Sbjct: 533 TTLNSKIKKFNIKKEHV 549 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 106/423 (25%), Positives = 176/423 (41%), Gaps = 24/423 (5%) Query: 107 DYLIHITTGTHVAQICWFLLAEARYL---PARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 LI +T G H + +L+Q R + Sbjct: 267 ALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQES 326 Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 + +E Q + I ++ +++Q++ VA KS + +L+ G TG GK Sbjct: 327 LQQENHQLSE--QLLSNLGIGDIIYQSQAMEDLLQQVDIVA-KSDSTVLICGETGTGKEV 383 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR I +L R + V++NCA + S LFGH KGAFTGA + G A+G Sbjct: 384 IARAIHQLSPRRDK---PLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADG 440 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G LFLDEIG+L + Q LL+ ++E+ G R + + ++IA T RDL Q+V + +F Sbjct: 441 GTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQF 500 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 R DL+ R+N++ LP LR R EDI + ++ A ++ TEA R ++ Sbjct: 501 RSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMS--- 557 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL + R + L + + L ++S + +++ Sbjct: 558 ---WDWPGNVRELENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDS--ALRSSMAQLL 612 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 D + + ++ + R+ + A R L + R G++ Sbjct: 613 HPTTPENDEEERQRIVQVLRETNGIVAGPRG------AATRLGMKRTTLLSRMQRLGISV 666 Query: 523 EAV 525 V Sbjct: 667 REV 669 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 164/366 (44%), Gaps = 15/366 (4%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFN 194 R IQ +P EVT++ L + +AS+ E ++ D + + +P Sbjct: 97 RAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQLASKVRELEAKSFDP-RDKMIGNSPAMQ 155 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 + +QI +VA + A +L+ G TG GK LA I R+ G V+VNCA L Sbjct: 156 EIYKQIGRVA-HTDATVLITGETGTGKEVLANLIHVNSARRN---GPMVKVNCAALPESL 211 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KGAFTGA R+G A+ G +FLDEIGE+ Q LL+ ++E+ F Sbjct: 212 LESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEMTLATQKKLLRILQEREFERV 271 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G V D ++IA T RDL V G FREDLY R+N+ T LP LRQR DI ++ Sbjct: 272 GGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVITLHLPALRQRIGDIPLLAEF 331 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++++ + AR + A W GN R+L + R + IT + Sbjct: 332 FLDKY-----RYAPSSPPARISEEAMERLNNYDWPGNVRQLEHEIERAVILSRGNVITSE 386 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + L + + + + A L ++ +L ++ + Q + Sbjct: 387 HM-----SLVPSSRSALQVDIAARLREKSTLEELLADVERLALQEALVQHDDDLKVAARS 441 Query: 495 FDVSRQ 500 +S Sbjct: 442 LGLSEA 447 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 105/366 (28%), Positives = 172/366 (46%), Gaps = 21/366 (5%) Query: 135 RLIQSSPPRKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 +++ +P + + + L + + I +P Sbjct: 97 EAMKAGAYDFITKPFNREALKLTVRKALDMQGLSRENRRLREELSEREEFRSIIGISPPM 156 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + I++VA + A +L+ G +G GK +AR I R + FV +NCA + D Sbjct: 157 EEVFRVIDRVA-DTDATVLITGESGTGKELVARAIHNRSSRR---AAPFVAINCAAIPRD 212 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGHVKGAFTGA + +EG R A G LFLDE+GEL + Q+ LL+A++EK P Sbjct: 213 LLESELFGHVKGAFTGAVQDKEGKFRQAEAGTLFLDEVGELPVELQSKLLRALQEKEVQP 272 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + D +++A T DL + +AEG+FREDL+ R+++ LP LR+R+EDI + Sbjct: 273 VGGAHTIKLDVRVVAATNADLEEAIAEGRFREDLFYRLSVIPVHLPPLRERKEDIPLLVR 332 Query: 374 YEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + +H G SV F+ E A+ W GN REL +V R+ + I Sbjct: 333 HFAAKHG---GASVTFSPEILAVMAAYG------WPGNVRELENTVERILIMRNADTIHP 383 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 D + +++ R R +E R ++ E L ++++ E V+ + ++ + Sbjct: 384 DDLPEKVRRGRSPQRECR------VINLPDEGYSL-EQLEREIVVEALERNNWNQSSAAR 436 Query: 494 LFDVSR 499 + R Sbjct: 437 FLRIPR 442 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 427 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 116/449 (25%), Positives = 198/449 (44%), Gaps = 46/449 (10%) Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQP-------RGPGE 153 F E L + GT V ++ ++ LI ++P R++ + + E Sbjct: 121 FASESIRLLDALRQGTSVQRVYHIPRPDSHV----LINAAPIRREGEIIGAISIEQDITE 176 Query: 154 VTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 + ++ +L+ A +E R Q D I + I +KVA ++ A + Sbjct: 177 LVRLNEELAHTTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVA-QTDATV 235 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA- 270 L+ G +G GK A+ I QA + F+ +NC + S LFG+ GAFTGA Sbjct: 236 LIYGESGVGKELFAQAIH---QASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAE 292 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 ++ + G L A+GG LFLDEIGEL + Q LL+A++E+ FY G ++ + +++A T Sbjct: 293 KKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAAT 352 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RF 389 R L Q+VA+G+FREDLY R+N+++ +P LR+R+ED+ + + ++ SV R Sbjct: 353 NRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRI 412 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + E +A + TW GN R+L + R++ +G I + + I Sbjct: 413 SPEVMQALFEY------TWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHV 466 Query: 450 SRPSALTALLGAEAENIDLFDR------------MQLEHVIAICRQAKSLSAAGRQLFDV 497 S + + R + E ++A + A +L V Sbjct: 467 SLHTPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGV 526 Query: 498 SRQGKASVNDADRLRKYLARFGLTWEAVQ 526 SR L + +F + E+ + Sbjct: 527 SR---------GTLYNKMKKFNINEESFK 546 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 115/395 (29%), Positives = 186/395 (47%), Gaps = 30/395 (7%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTII---DLDLSRYNAIASRFAEERQQTLDFLKSGIAT 188 + ++ +P P ++ ++ L+++R + SR +E ++ F + I Sbjct: 90 MTMNAMRLGAIEYLVKPVDPLDIVVLVEKTLNINRMKSRLSRLQKEVEKKYHF--TNIVG 147 Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 ++P + E I K A KS A +L+ G +G GK A+ + + G FV VNC+ Sbjct: 148 QSPQMQILFESIHK-ASKSTANVLITGESGTGKELAAKAVHYNGPLKE---GPFVAVNCS 203 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 T S LFGHVKGAFT A G AN G LFLDE+G++ AD Q LL+ +++ Sbjct: 204 AFSSGTLESELFGHVKGAFTDAHRDHMGRFELANKGTLFLDEVGDIPADIQVKLLRVLQD 263 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 KTF G+ + SDF+L+A T RDL+ LV +GKFREDL+ R+N+ T P LR+ EDI Sbjct: 264 KTFERVGAQEPIHSDFRLVAATNRDLKDLVRKGKFREDLFYRLNVIGMTTPALREHPEDI 323 Query: 369 EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 + + ++R+ + G S++ + A + W GN R+L ++ A Sbjct: 324 PLLISHFLKRYGQVGGRSIK-----TLSMHAMKIMQEYRWPGNVRQLENAIESAAAMCDG 378 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 I + EI Q P A G E + +R++ ++ Q + + Sbjct: 379 SMIRTADLPLEIT----APQSEDPLREDAYRGTLPEVV---ERIEKHMILRALEQNQWVK 431 Query: 489 AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 A + VS + + +A +GLT + Sbjct: 432 AHAARTLGVSERVVSY---------KMANYGLTKD 457 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 99/366 (27%), Positives = 162/366 (44%), Gaps = 22/366 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTII-DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 +++ +P V ++ + L + + + I P Sbjct: 101 EAMRAGAENYLVKPLDVNAVLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPEL 160 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + + E +++ A +RA +L+ G +G GK A+ + E + AF++VNCA L Sbjct: 161 HAVYEVVKR-AAPTRATVLILGESGTGKELFAQALHEESP---RADKAFIKVNCAALSET 216 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KGAFTGA +EG A+GG LFLDEIG++ Q LL+ ++++ F Sbjct: 217 LLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFER 276 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + + D +L+A T RDL V G+FREDLY R+N+ TLP LRQR+ DI + Sbjct: 277 VGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVS 336 Query: 374 YEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + +++++ G +R A L+ W GN REL V R +T Sbjct: 337 HFIDKYSKAYGKDIRGLAPGTLNAVLS------HDWPGNVRELENVVERAVVLCKGSELT 390 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 D + + R +E P AL ++ E ++ ++ Sbjct: 391 ADDLPPTLRGPR--PRERAPGALIPG--------ATLYEIEREAILRTLEMVGGSTSRAA 440 Query: 493 QLFDVS 498 ++ +S Sbjct: 441 EILGIS 446 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 165/367 (44%), Gaps = 23/367 (6%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKS--GIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ L + R +E + D + ++P R I+ KV ++ +L+ Sbjct: 206 LNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKV-CSVKSTVLIL 264 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ES 273 G +G GK A+ I E A + F+ +NC + S LFG+ +GAF+GA + Sbjct: 265 GESGVGKEVFAKAIHE---ASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKG 321 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 ++G + A GG LFLDEIGE+ D Q LL+ ++E+ +Y G +++++ DF++IA T RD Sbjct: 322 KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRD 381 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEA 393 L++ + +G FREDLY R+N+ + +P LR+R+EDI + + +R + Sbjct: 382 LQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSS 441 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 W GN REL V R+ FAT G I + + N N E+ S Sbjct: 442 I-----MHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTNDTLEN--ETSHS 494 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 L + + D + + + R + V+R L Sbjct: 495 LLLSNNNTILSLQEEMDEHEKKIIERALRILDGNKLECAKQLGVTRA---------TLYN 545 Query: 514 YLARFGL 520 L R GL Sbjct: 546 RLKRLGL 552 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 99/333 (29%), Positives = 158/333 (47%), Gaps = 23/333 (6%) Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 I +R +E + + S + +P +R+ + IE VA S A +L+ G TG GK +A Sbjct: 126 IQNRLLKE-ELKDKYTFSELVGGSPQMHRIFKMIEDVA-PSTASVLIMGETGTGKELVAH 183 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I + FV ++CA L S LFGH KGAFTGA +SR+G A+GG L Sbjct: 184 AIHY---RSERAGKPFVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTL 240 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDE+ E+ Q LL+ +E+ F G ++ + D + IA T R+L + V+EG+FRED Sbjct: 241 FLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFRED 300 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYE-VERHASLTGDSVRFNTEARRAWLAFATSPQ 405 L+ R+N+ +P LR+R++DI +Y V+ + F+ EA +A L+ Sbjct: 301 LFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLS------ 354 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 W+GN REL ++ R S I++D + + I E P + Sbjct: 355 HHWQGNIRELQNTIERAIVLCKSDTISVDHLPESI----MPDNEYIPVIKIPIGT----- 405 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + E + + + ++ +S Sbjct: 406 --TLKEAEKEIIQRTLQITNGSKQSAAKILGIS 436 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 166/366 (45%), Gaps = 30/366 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS------GIATRNPHFNRMIEQIEKV 203 G + I LD R + ++T L S G+ +P ++ +I V Sbjct: 99 GALDYLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMV 158 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A S A +L++G +G GK +AR + + V +NCA L S LFGH Sbjct: 159 A-PSDATVLIHGDSGTGKELVARALHACSARSDK---PLVTLNCAALNESLLESELFGHE 214 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA + REG A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S D Sbjct: 215 KGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVD 274 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 LIA T RDL + V+ G+FR+DLY R+N+ +P LRQR+EDI D+ + R A Sbjct: 275 VWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN 334 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 +V+ F +A + + W GN REL ++ R T I+ + I Sbjct: 335 RKAVKGFTPQAMDLLIHY------DWPGNIRELENAIERAVVLLTGEYISERELPLAI-- 386 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 A T + + I ++ E ++A + + ++R+ Sbjct: 387 -----------AATPIKAENSAEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTL 435 Query: 503 ASVNDA 508 + Sbjct: 436 LAKLSR 441 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 96/369 (26%), Positives = 164/369 (44%), Gaps = 20/369 (5%) Query: 129 ARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTL--DFLKSGI 186 A +P + + R R E+ + L + ++A E +Q I Sbjct: 121 ATGIPVMDDEGNIKRVVVNVRDITEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNI 180 Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 +P R+++ +VA K + +L+ G +G GK +A I L H+ G +++N Sbjct: 181 VASSPKTKRVLDMAAQVA-KVDSTVLITGESGVGKEIVANVIHCLS---HRSKGPLIKIN 236 Query: 247 CATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 C + + S LFG+ GAFTGAR + + G+ A G LFLDE+GEL + Q LL+ Sbjct: 237 CGAIPENLLESELFGYEPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRV 296 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +++ G + + D +++A T +DL ++V + KFR+DLY R+N+ + +P LR+R+ Sbjct: 297 LQDHEVLRVGGLKPIPVDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERR 356 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI + +E+ G + RF + A+ W GN REL + R+ Sbjct: 357 EDIPLLALHFLEKINKKYGFNKRFAPDVIDRLSAY------PWPGNIRELENVIERVMVM 410 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 S I + I L + S + L A + ++ + ++ Sbjct: 411 TKSDEIRTIHLPGNIKNLSSLQNDIMFSEIMPLKKA-------VEHVEKHLIEQALKKYG 463 Query: 486 SLSAAGRQL 494 S R L Sbjct: 464 STRKVARAL 472 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 95/337 (28%), Positives = 159/337 (47%), Gaps = 24/337 (7%) Query: 164 YNAIASRFAEERQQTLDFL--KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + R +EE+ + L +S I +P R+ E I K+A S A +L+ G TG GK Sbjct: 178 IHEEKKRISEEKLYYKEELLKQSEIIGYSPPIKRVSEIIAKIA-PSSATVLIRGETGTGK 236 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I + + ++++NCA + + S LFGH KGAFT ARE+R+G A Sbjct: 237 ELIAKAIHNYSPRKEK---PYIKLNCAAIPENLLESELFGHEKGAFTDARETRKGRFELA 293 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDE+G+L QA +L+ ++E+ F G + + D +++A T RDL ++V G Sbjct: 294 DGGTLFLDEVGDLSLPLQAKILRILQEQEFERVGGSKTIKVDVRIVAATNRDLEEMVRMG 353 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 FREDL+ R+N+ P LR R +D+ Y +ER + +A + Sbjct: 354 DFREDLFYRLNVIPIFSPPLRDRGDDVILLSRYFLERFCKRHAKELHLTPKAEELLKHY- 412 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL S+ R+ A S I +VV + + + + Sbjct: 413 -----DWPGNIRELENSIERLVLLAPSESIDEEVVLSVLPGRVHGYTK------------ 455 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 E + + ++ +I ++ + + ++ Sbjct: 456 EVKTRADLEELERSAIIKALKECHGIKLQAAKKLGIT 492 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 167/372 (44%), Gaps = 11/372 (2%) Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQT-LDFLKSGIATRNPHFNRMIEQIEK 202 +P P + II R A+ A R++ + +R+P + E I Sbjct: 106 FLTKPPDPQHLQIIVQRALRDRALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGH 165 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA + + +L+ G TG GK +AR I + + +G FV VNC L + S LFGH Sbjct: 166 VAG-TASTVLIRGETGTGKEQIARAIHQASA--NYRTGEFVAVNCGALNENLLESELFGH 222 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KG++TGA R G A+ G LFLDEIG++ Q LL+ ++E+ F G + Sbjct: 223 EKGSYTGADRKRIGRFELAHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEI 282 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D +++A T +D+ +LV +GKFREDLY R+N+ +P LR+R EDI + + ++ + Sbjct: 283 DVRVVAATHQDMEKLVKDGKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKFVRV 342 Query: 383 TGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 + EA + W GN R+L ++ R A G I + E+ R Sbjct: 343 GQKPPTISPEALDLL------TKCPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGR 396 Query: 443 LRYNWQESR-PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 + + P + + +L + ++ ++++ ++ +SR+ Sbjct: 397 RPESSAAGKHPFHVDLNRKLPDQLSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRS 456 Query: 502 KASVNDADRLRK 513 ++ K Sbjct: 457 ITDKIAQYKIDK 468 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 426 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 98/382 (25%), Positives = 164/382 (42%), Gaps = 29/382 (7%) Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 +P + G I+ D + + + +R+ LD I + + Sbjct: 190 TPIYTGTKIEGA---VIVFYDFPQIEYLENELKRDRK--LDKAFDIIIGNSGKLKDALTI 244 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 K A ++ + +L+ G +G GK +A I A + F+ VNCA + S L Sbjct: 245 ASK-AAETDSTVLIRGESGTGKELVANAIHY---ASKRKDKPFIRVNCAAIPVTLLESEL 300 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH +GAFTGA + G A+GG +FLDEIG++ + Q LL+ I+EK F G + Sbjct: 301 FGHERGAFTGAVTQKIGKFELADGGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKT 360 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T +DL + + EG FREDLY R+N+ LP LR+R+ DI +++ +E+ Sbjct: 361 IKVDVRIIAATNKDLEKAIKEGTFREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKL 420 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 +V + A W GN REL + R T + + I + + Sbjct: 421 NKKLNKNV-----KKVTKKAMQALIYYDWPGNIRELENIIERCITLSDTDYIDYEDLPQY 475 Query: 440 INRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSR 499 I + + S + E + + + + + A ++ KS ++ Sbjct: 476 IRN-----ETTTVSDDDIIYLGENSELLTMEEYEYKIIKAAIQRYKSF----------NK 520 Query: 500 QGKASVNDADRLRKYLARFGLT 521 GK + +FGL Sbjct: 521 AGKVLGLTHKTIAAKARKFGLV 542 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 426 bits (1096), Expect = e-118, Method: Composition-based stats. Identities = 110/386 (28%), Positives = 183/386 (47%), Gaps = 29/386 (7%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-----FLKSGIATRNPHFNRMIEQ 199 E P ++ I +++ + R ++ I +P + + Sbjct: 90 IEFPFSEKQLNSILEKINQKEENEKKLIYFRNRSAQDGVLCQYLCSIIGSSPQLREICKL 149 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 +VA + P+L+ G TG GK LAR I +L + ++ F+ +NCA + + S L Sbjct: 150 AGEVA-PTDLPVLITGETGTGKELLARGIWKLSKRSNK---PFIAINCAAIPENLLESEL 205 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FG+ KGAFTGA +++EG A+GG +FLDEIGEL Q+ LL+ ++E TFY G +++ Sbjct: 206 FGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKLLRVLQEGTFYRVGGNKE 265 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D +++A T RDL +VA+GKFREDLY R+NL LP LR+R+EDI ++ V ++ Sbjct: 266 IKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLRERKEDIPYIVECIVNKY 325 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV--- 436 S+ A + W GN REL +V R +T++ + Sbjct: 326 NQKLSKSI-----AGASKEYMEVLKDQRWEGNIRELENTVVRSMILCRDNILTVNDLTFL 380 Query: 437 --EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + ++ N++E + + A L E ++ +++ V K QL Sbjct: 381 REKRVKPQIEDNFEEILKNRVLASLE-EGSIEEIKEKIDKIIVQTALEYTKHNQVKASQL 439 Query: 495 FDVSRQGKASVNDADRLRKYLARFGL 520 ++R LRK + ++GL Sbjct: 440 LGINRA---------TLRKKIQKYGL 456 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 172/387 (44%), Gaps = 28/387 (7%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQT-LDFLKSGIATRNPHF 193 +++ +P + + A+ E + + I R+P Sbjct: 89 EAMKAGATDFLLKPFSLDHLMQVVDKALEVRALREENRELKAALGRRYEFDNIVGRSPAM 148 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + IE+V SRA +LL G +G GK +AR I + + V++NC + + Sbjct: 149 QEIFAAIERV-GPSRATVLLTGESGVGKDLIARAIHFHSPRKDR---PLVKINCTAIPEN 204 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFG+ KGAFTGA+ ++ G A+ G +FLDEIG++ A Q LL+ ++E+ F Sbjct: 205 LMESELFGYEKGAFTGAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFER 264 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 GS+ D +L+A T +DLR + +G FREDLY R+N+ +P LR+R+ DI + Sbjct: 265 LGSNVTRHIDVRLVAATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLAN 324 Query: 374 YEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + V + A TG V T+A W GN REL + R AT ++ Sbjct: 325 HFVHKLAPDTGCQVESITDA-----GMEKLMAYHWPGNVRELENVIERSLVMATGTQLDA 379 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 D ++ E RP A E + L D+ + E + R+A + + Sbjct: 380 DDIKLE--------SAPRPRAQGNDNHFLPEGLSL-DQYEQEIIREALRRADGNKSQAAR 430 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGL 520 L ++R + LR L + GL Sbjct: 431 LLGLTR---------NALRYRLTQMGL 448 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 172/391 (43%), Gaps = 29/391 (7%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 I++ +P E++ + ++ N A R + ++ I + + Sbjct: 92 IKAGAFDYITKPFDQAELSSVVAKAAKTNESARR----SVRPDVKARAAIIGDSSTIQEV 147 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 + I+KVA + + +L+ G +G GK +A + R + F+++NCA + Sbjct: 148 YKIIDKVA-DTPSTVLITGESGTGKELIATALHGASSRRDK---PFIKINCAAIPHTLLE 203 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFG+ +GAFTGA S+ G A+ G LFLDEIGE+ + Q LL+AI+E F G Sbjct: 204 SELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGG 263 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + D +L+A T RDL+ + G+FR+DLY R+ + +LP LR+R+ D+ + V Sbjct: 264 IKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFV 323 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 E++ + + A L W GN REL + R+ FA IT + Sbjct: 324 EKYNRRLNKKIEGIADDAMALL-----QGYAWPGNIRELENLIERVLLFADGPLITARDL 378 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFD-------RMQLEHVIAICRQAKSLSA 489 + + + + ++ A + + L D ++ + ++ + Sbjct: 379 PEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVT 438 Query: 490 AGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 +L +SR+ L+ + FGL Sbjct: 439 RAARLLQISRK---------SLQTKMKEFGL 460 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 109/405 (26%), Positives = 172/405 (42%), Gaps = 37/405 (9%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAI--ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 E GE++ + LSR N R+ E + I +P ++EQ+E Sbjct: 344 VENALAYGEISRLKDQLSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVEL 403 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA S + +L+ G TG GK +AR I L Q + + ++VNCA + S LFGH Sbjct: 404 VA-DSDSTVLILGETGTGKELIARAIHMLSQRKKRT---MIKVNCAAIPSALLESDLFGH 459 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA + G A+ G LFLDE+G++ D Q LL+A++E+ G + + Sbjct: 460 EKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPV 519 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++IA T RDL +V + FR DLY R+N++ +P LR+R+EDI DY + + A Sbjct: 520 DVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARK 579 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL-------- 433 ++ F+ E L W GN REL + R + L Sbjct: 580 MNRAIEAFSAETMDMLLNL------PWPGNVRELQNVIERAVILTKGPVLHLPATELRHH 633 Query: 434 ----DVVEDE-----INRLRYNWQESRPSALTALLGAEAENIDLF-DRMQLEHVIAICRQ 483 + E + S P L G+ DL + ++ + ++ + R+ Sbjct: 634 LAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPNPGDLAGEAIERDQILRVLRE 693 Query: 484 AKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 + R L + R G++ + V + Sbjct: 694 TNGIVGGPRG------AAAHLGMKRTTLLSRMRRLGISPKEVDHR 732 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 102/354 (28%), Positives = 155/354 (43%), Gaps = 30/354 (8%) Query: 171 FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 F Q L++ I +P + + +VA S A +L+ G TG GK +A I Sbjct: 337 FPLTAQDRLEYAFPEIVGGSPQMQEVFNLMGQVA-PSTATVLILGETGVGKELIAGAIH- 394 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 QA + V +NCA + + S LFGH KG+FTGA + R G A+ +FLDE Sbjct: 395 --QASDRAERQMVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDE 452 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IGEL D Q LL+ ++EK F G +S D ++IA T R+L V G+FR DLY R Sbjct: 453 IGELSLDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYR 512 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWR 409 +N++ +LP LR R+ DI ++ +ER+ +G + F+ + A + + W Sbjct: 513 LNVFPISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKY------RWP 566 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + R I + + A E + I Sbjct: 567 GNIRELEHLIERQVILTEGTLIRDLDIP----------AAHQVMATDGSGQTEIKTIAQN 616 Query: 470 DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 +R + V+ +C S +L V A L + + GL+ + Sbjct: 617 ERDHIFSVLRLCNGKISGKNGAAKLLGVP---------ATTLNSKIKKLGLSRQ 661 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 117/381 (30%), Positives = 169/381 (44%), Gaps = 30/381 (7%) Query: 159 LDLSRYNAIASRFAEE------RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 L+L R A + + E R+ F + I + + + I KVA SRA L Sbjct: 171 LNLQRTFASSQQVLREENSQLRRKLQDRFNRYNIIGQCKRIQEVYDYIAKVA-PSRATAL 229 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 L G +G GK +AR I QA + F+++NCA L + S L GH KGAFTGA Sbjct: 230 LLGESGTGKELVARAIH---QAGPRAGEPFIKLNCAALPENLLESELLGHEKGAFTGAVG 286 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 ++G A+GG LFLDEIGEL QA LL+ ++E+TF G R ++ D ++IA T R Sbjct: 287 QKKGRFELADGGTLFLDEIGELPLALQAKLLRVLQERTFERLGGSRTIAVDVRIIAATNR 346 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTE 392 L V EG FR DLY R+N+ LP LR+R+EDI LD+ + V+F Sbjct: 347 SLEAGVEEGVFRADLYYRLNVVPVVLPPLRERREDIPLLLDHFLRESNRHNRRRVKFAAA 406 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV------EDEINRLRYN 446 R + +W GN REL V R+ + LD + D NR Sbjct: 407 VIRRL------NEYSWPGNVRELQNLVERLVIMVDGEVVNLDDLPAYLADPDPANRRCPR 460 Query: 447 WQESRPSALTALLGAEAENIDL---FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 +P+A+ + + M+ E V+A R+ + + + Sbjct: 461 GFADQPAAVLPAPSWVDQGMAAGRSLWEMEKEEVLAALRRHGWVQTRAARDLGI-----T 515 Query: 504 SVNDADRLRKYLARFGLTWEA 524 R+RKY ++ Sbjct: 516 PRQMGYRIRKYAIEIPISPVP 536 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 96/380 (25%), Positives = 174/380 (45%), Gaps = 24/380 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK--SGIATRNPH 192 ++S +P +V + + ++ R Q ++ I +P Sbjct: 92 EAMKSGADNFLLKPLDADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQ 151 Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 + + I + A +RA +L+ G +G GK +A+ + + + + F+ V+CA L Sbjct: 152 LQGIYDVIRRAAG-TRATVLILGESGTGKELIAQALHQESPRKDK---PFIRVHCAALSE 207 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 + S LFGH KG+FTGA +EG A+GG LFLDEIGE+ Q LL+ ++++ F Sbjct: 208 NLLESELFGHEKGSFTGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFE 267 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 G + + D +++A T RDL V G+FREDLY R+N+ + TLP LR R+ D+ + Sbjct: 268 RVGGTQTLKVDVRIVAATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALV 327 Query: 373 DYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 ++ +E+++ G VR +A L+ W GN REL ++ R A + Sbjct: 328 NHFLEKYSDSYGKQVRGLAPGTLQALLS------HDWPGNIRELENAIERAVVLAQGQEL 381 Query: 432 TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAG 491 + D + + R + + A L A ++ E ++ + ++ Sbjct: 382 STDDLPPVLRGPRPHGTSTGALIPGATLAA----------IEREAILRTLEMVQGSTSRA 431 Query: 492 RQLFDVS-RQGKASVNDADR 510 ++ +S R+ + + + Sbjct: 432 AEVLGISVRKIQYRLKEYST 451 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 94/375 (25%), Positives = 178/375 (47%), Gaps = 34/375 (9%) Query: 160 DLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 +++RY + + +E + L I ++ +++ QI++VA + + +L+ G +G Sbjct: 101 EMARYTTVFRQVSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVA-PTDSTVLITGESG 159 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +A I Q + FV++NCA + S LFG+ KGAFTGA + G Sbjct: 160 TGKELVADSIHRHSQRNGRR---FVKINCAAIPDTLLESELFGYEKGAFTGAAARKPGKF 216 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 ANGG +FLDEIG++ + QA +L+ +EEK G R + D +++A T R+++++V Sbjct: 217 EQANGGTVFLDEIGDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMV 276 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL 398 A+G FREDL+ R+N++ LP LR+R EDI ++ ++ + + + A Sbjct: 277 ADGAFREDLFFRLNVFPIQLPPLRERPEDIPFLIEEFMKFSSKES----TISPPAMHILC 332 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 A W GN REL +V + + + + + + P+ L Sbjct: 333 A------HQWPGNVRELRNAVE-SSLLFGKEVVEPEHLPPALAG-----SMAVPTPAGVL 380 Query: 459 LGAEAENIDL---FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 + E E++DL ++ ++ +++ + A +L + + L + Sbjct: 381 ISGEDESLDLDFRLQELEKGILVEALKRSDGVQAQAARLLGIKER---------SLWHRV 431 Query: 516 ARFGLTWEAVQDQHS 530 ++G+ + +H+ Sbjct: 432 KKYGIDVSQI-RRHT 445 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 116/417 (27%), Positives = 186/417 (44%), Gaps = 15/417 (3%) Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEA--RYLPARLIQSSPPRKKEQPRGPGEVTIID 158 F P E + H +QI + R + ++ P E I Sbjct: 59 FAPSNEGLELLKKASQHNSQIVTIVGVPVDHRGMALESLRRGAFFCLNTPYNHEETIIAT 118 Query: 159 -LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 L ++ + + R+ GI + P ++ IEK+A + + +L+ G + Sbjct: 119 SRALQHHDLLTKGEIKARKFRKSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGES 178 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR I + FV VNCA + D S LFG+VKGAFTGA +++ G Sbjct: 179 GTGKELVARAIHAHGPRSRKN---FVPVNCAAIPEDLLESELFGYVKGAFTGATQAKMGR 235 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 L+ A GG LFLDEIG++ A QA LL+ ++EK F P G + VS D +++A T RDL + Sbjct: 236 LQYAEGGTLFLDEIGDMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEKS 295 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 VAEG+FREDLY R+N+ +P LR+R+EDI ++ V + + + F+ +A +A Sbjct: 296 VAEGRFREDLYYRLNVIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQA 355 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 Q W GN REL V RM+ F ++ + ++ Q+ Sbjct: 356 L------KQYPWPGNVRELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQEN 409 Query: 457 --ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 +L + L +R + + ++ +L ++ R + Sbjct: 410 SISLEDGGVDFNLLVNRFENQLILQALNVTGGNKREAAKLLNLKRTTLIEKLKRKNI 466 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 108/440 (24%), Positives = 172/440 (39%), Gaps = 40/440 (9%) Query: 86 EEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKK 145 E + A + E Y + G + W L + + I + Sbjct: 287 ENLEAKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLGDQVSGPILQGICAQISTAV 346 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 ++ + L N +Q L+ I ++ I VA Sbjct: 347 SNVLANEQILRLQKQLEDEN-------HYLKQQLNKDFEEIVGGGEAMQQVYRLISLVAE 399 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 S A +LL G TG GK +A+ + + + ++VNCA + S LFGH +G Sbjct: 400 -SNATVLLLGETGTGKELIAKAVHHTSARKDKL---MIKVNCAAMPASLIESELFGHERG 455 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA E R G AN LFLDE+GE+ + Q LL+ ++EK G + + + Sbjct: 456 AFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMERVGGKTTIKLNVR 515 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T RDL V G+FR DLY R+N++ LP LR R+EDIE + + + + G Sbjct: 516 IIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAGFFLAKFSKSIGK 575 Query: 386 S-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 V+ + A R A+ W GN REL + R AT I + Sbjct: 576 KTVKLSANALRQLQAYL------WPGNVRELEHLIERSVILATDPMIREFFL-------- 621 Query: 445 YNWQESRPSALTALLGAEAENIDL-FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 P A A DL ++++ H+I + R+ ++ + + Sbjct: 622 -------PQATGATTDEHTMQSDLTLEQVERMHIIQVLRRCGG------KISGIGGAAEI 668 Query: 504 SVNDADRLRKYLARFGLTWE 523 + + + + G+T Sbjct: 669 LGIPGNTIHSKMRKLGITKA 688 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 98/364 (26%), Positives = 167/364 (45%), Gaps = 28/364 (7%) Query: 153 EVTIIDLDLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 ++ + +L + I ++ Q T + I +P + I EK A +S + Sbjct: 222 DIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSA-QSNST 280 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK LA I R F++VNCA + S FG+ KGAFTGA Sbjct: 281 VLILGESGTGKELLAHAIHAASMRRE---NPFIKVNCAAIPDTLLESEFFGYAKGAFTGA 337 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 +S+ G A+GG +FLDEIG++ QA LL+ ++E F G ++ + D ++IA T Sbjct: 338 VKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAAT 397 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-F 389 R+LR+L+ +G+FREDLY R+N+ T+P LR R+ED+ + + + G +V+ Sbjct: 398 NRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGI 457 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + +A ++ W GN REL + R+ A +T +N+ R + + Sbjct: 458 SKDAEEVLFSY------DWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFRMSSE- 510 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 + I+ + M + I+ Q ++S + Sbjct: 511 ---------RDVDLMPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNIS-----LATLYN 556 Query: 510 RLRK 513 +L+K Sbjct: 557 KLKK 560 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 90/363 (24%), Positives = 163/363 (44%), Gaps = 25/363 (6%) Query: 153 EVTIIDLDLSRYNAIASRF-----AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 V++I +S+ N RQ + + + I ++ +K A ++ Sbjct: 320 PVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQK-ASET 378 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 + +L+ G +G GK +A+ I +++ FV VNCA++ + S LFG+ KGAF Sbjct: 379 TSTVLIRGESGTGKELIAKAIHNNSNRKNK---PFVRVNCASIPENLLESELFGYEKGAF 435 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA +S+ G A+ G +FLDEIG++ Q LL+ ++E+ G + D ++I Sbjct: 436 TGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVI 495 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T R+L +++ +G FREDLY R+N+ LP LR+R+EDI ++ + + ++ Sbjct: 496 AATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTI 555 Query: 388 -RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 +A + + +W GN REL + R I + + + Sbjct: 556 LGIKQDALNLLIEY------SWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESK 609 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 L + ++I F+ + + + A ++ KS + AG+ L R Sbjct: 610 SFN---------LNIDIDHILPFEEYEKQIIEAAMKKYKSFNKAGKALGLTHRTVSLKCK 660 Query: 507 DAD 509 + Sbjct: 661 KYN 663 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 423 bits (1089), Expect = e-117, Method: Composition-based stats. Identities = 104/424 (24%), Positives = 181/424 (42%), Gaps = 34/424 (8%) Query: 116 THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV---TIIDLDLSRYNA----IA 168 A + + ++ E+P P + ++++R Sbjct: 98 DPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEIARERKGARTAR 157 Query: 169 SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRI 228 +R + G+ + R+++Q+ KVA + A +L+ G +G GK +AR I Sbjct: 158 ARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVA-STGATVLVLGESGTGKELVARAI 216 Query: 229 LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFL 288 + R Q FV ++CA + S LFGH KGAFTGA + G ANGG LFL Sbjct: 217 HDASPRREQ---PFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGRFELANGGTLFL 273 Query: 289 DEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLY 348 DE+GE+ Q LL+ ++E+ F G + V D ++++ T R+L Q+V G+FREDLY Sbjct: 274 DEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQMVESGRFREDLY 333 Query: 349 ARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQAT 407 R+N+ LP LR R D+E + V R A +V EA + Sbjct: 334 YRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALELL------RRHR 387 Query: 408 WRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENID 467 W GN REL + + FA + + + + + + P+ + + D Sbjct: 388 WPGNVRELENVIEQALVFAEGELVRPRDLPEGVRK-------APPAPSLPVPSGDRSLTD 440 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + + ++ + ++A +A+ + A +L + L L ++G+ + Sbjct: 441 ILEDLERQLILAAYEKARGVKAETARLLGIKPSA---------LYYKLEKYGIVKAGEKA 491 Query: 528 QHSS 531 + +S Sbjct: 492 EETS 495 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 162/373 (43%), Gaps = 24/373 (6%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAE--ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 G + + + R E E + K+ R+ ++ VA S Sbjct: 99 GAYDYILKPFAPEVIEELVRRVLEIEETAPAVKRKKNTAIFRSAFMAQLFSLARDVAA-S 157 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 A +L+ G +G GK AR I E SGAFV VNCA L + S LFG+ KGAF Sbjct: 158 EATVLITGESGTGKEVFARYIHENSNRS---SGAFVAVNCAALPENLMESELFGYEKGAF 214 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA + G A+GG + LDE+GE+ QA LL+ ++EK G + + +++ Sbjct: 215 TGAVNRKPGKFELADGGTILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRIL 274 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-S 386 A T + L++ V EG FREDLY R+N+ + LP LR+R+EDI + E++A + G S Sbjct: 275 ATTNKVLKKEVDEGNFREDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGS 334 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR----------ITLDVV 436 + +A +A L + W GN REL ++ R G IT++ Sbjct: 335 CKMTDDAVKALLDY------DWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQF 388 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 + L + + A + M+ E +I ++ + Sbjct: 389 MTDKQELAAADSYTGCETTEDSVSAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLG 448 Query: 497 VS-RQGKASVNDA 508 ++ R + +N+ Sbjct: 449 ITVRTLRNKLNEY 461 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 105/356 (29%), Positives = 163/356 (45%), Gaps = 29/356 (8%) Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 R + RQ + + + + Q+ + A SR+ +LL G +G GK Sbjct: 179 ERQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSA-PSRSTMLLRGESGTGK 237 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I L + G F++VNCA L S LFGH KGAFTGA+ R+G A Sbjct: 238 EVIARAIHYLSPRK---DGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELA 294 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDEIGE+ QA LL+ ++E+ F G R + D +L+ T RDL + VA+G Sbjct: 295 HGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKG 354 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAF 400 +FR DLY RIN+ + +P LR+R+EDI +++ +E+ + V + +A + + Sbjct: 355 EFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMM-- 412 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE----INRLRYNWQESRPSALT 456 W GN REL V R AT IT + + ++ + + +P + Sbjct: 413 ----NCYWPGNVRELENCVERTATMMRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVV 468 Query: 457 ALLGAEAENIDLFDR--------------MQLEHVIAICRQAKSLSAAGRQLFDVS 498 L A +F + E +I Q + A + ++S Sbjct: 469 PLERISAPYGAIFAEWDGQGQATGAAPPTSERERLIWAMEQCGWVQAKAARALNIS 524 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 423 bits (1087), Expect = e-117, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 165/350 (47%), Gaps = 26/350 (7%) Query: 154 VTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 + I ++R N + + E + + I R+ + Q+ +V +S + + Sbjct: 343 LADIVQQINRINMQLNYYKNELYKVNGTSYTVGSIVCRDERIATLKSQVLQV-GRSNSTV 401 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G +G GK A I R + F++VNC+ + G+ A + LFG+ GAFTGAR Sbjct: 402 LITGESGTGKELFAHSIHNASNRRKE---PFIKVNCSAIPGELAEAELFGYEDGAFTGAR 458 Query: 272 -ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + + G A+ G +FLDEIG++ Q+ LL+ I++K G + D ++IA T Sbjct: 459 KQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAAT 518 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 RDL+++V EG FREDLY RIN+ +P LR R++DI D + ++ + G V Sbjct: 519 NRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGI 578 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 TEA A + W GN REL + RM + SG I L + +EI Sbjct: 579 TEA-----ALEALTRYDWPGNIRELENIIERMLNYRESGLIELQDLPEEI---------- 623 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + G A+ M++E + A +A + +L +SR Sbjct: 624 ----VGRPGGMAAKATQTLAVMEMETIQAALAEAGGNKSKAARLLGISRS 669 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 109/389 (28%), Positives = 177/389 (45%), Gaps = 31/389 (7%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASR--FAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 +P E+ II ++ + + F ER T L GI + ++ + + Sbjct: 105 ITKPFRVEELKIILQRMAEKVRLVAENHFLRERVNTEMEL-HGIVGSSAKIQDVLRMVGR 163 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 + +R P+L+ G +G GK +AR + FV V+C +L S LFGH Sbjct: 164 L-KDTRTPVLICGESGTGKELVARAMHF---RGGFAKRPFVAVDCGSLVPTLIESELFGH 219 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA + +EGL ++ANGG +FLDEIGEL D QA LL+ +++K P GS++ V Sbjct: 220 EKGAFTGAIKPKEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKV 279 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++IA T RDL G FR+DLY R+N+ T LP LR+R+ DI + + ++R S Sbjct: 280 DVRVIAATNRDLEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDR-PSA 338 Query: 383 TGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 + V ++A ++ + Q W GN REL + R I +D + + Sbjct: 339 GREGVEVTSQAMKSLM------QYDWPGNVRELENCIERAVALGNGEVIDVDDLPPSL-- 390 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 Q P + ++ DL + ++ + + Q ++ +SR Sbjct: 391 -----QAMAPKKNAPAVSEGYDSTDL-EDIERTTIQRVFDQVGGDKGLALKMLGISRA-- 442 Query: 503 ASVNDADRLRKYLARFGLTWEAVQDQHSS 531 L + + R+ + +S Sbjct: 443 -------TLYRKIKRYNIDISRTARAAAS 464 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 170/382 (44%), Gaps = 22/382 (5%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHF 193 L++ +P E+ + + ++ ++ D I R+ Sbjct: 93 ELMKYGAFDYITKPFSNDELLLSIHNAVELARAHRQYRLLQEVMEDRYGVHKIVGRSRAI 152 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 ++ +E+ A SR+ +L+ G +G GK +AR I + FV VNC L Sbjct: 153 RDVLIMVER-AAPSRSTVLITGESGTGKELIARAIHYTSPRK---DNPFVSVNCMALNPG 208 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KG+FTGA R G A+GG LFLDEI EL D Q LL+ ++E+ F Sbjct: 209 VLESELFGHEKGSFTGAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFER 268 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G ++ D +++A T +DL +V +G FR+DLY R+N+ LP LR+R+EDI + Sbjct: 269 VGGGEEIEVDIRVVAATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVA 328 Query: 374 YEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + V++ + + F+TEA + W GN R+L V I Sbjct: 329 HFVDKVCTDNTMPAKTFSTEALNYLTGYE------WPGNIRQLENVVESCLVLVPGTVIN 382 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 +D + EI +ES+ + LL + + D ++++ + +A + Sbjct: 383 VDNLPAEIRD-----EESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQVKAA 437 Query: 493 QLFDVSRQGKASVNDADRLRKY 514 + +S+ +L+KY Sbjct: 438 EYLGISKS-----LLQYKLKKY 454 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 92/374 (24%), Positives = 176/374 (47%), Gaps = 30/374 (8%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 +G +D+ I + ++++ ++ GI ++ + ++I+ V KS Sbjct: 94 KGANHYIPKPIDIDNLIKIIDFYIKKQENFDVEEEFEGIIGKSQKMKDLFKEID-VVSKS 152 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 + IL+ G +G GK +A+ I + + + F+ +NC+ + + + LFGH KG+F Sbjct: 153 ESSILIEGESGTGKELVAKAIH---RRSKRANQPFIPINCSAIPNELFENELFGHEKGSF 209 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA G + A G LFLDEIGE+ QA LL+ ++E+ F+ G + ++I Sbjct: 210 TGASNREIGKIELAGEGTLFLDEIGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVI 269 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 + T R+L ++V +FREDL+ RIN+ +P LR+R+EDI + +++ + + +V Sbjct: 270 SATNRNLEEMVENKEFREDLFYRINVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNV 329 Query: 388 -RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + +A + + W GN R+L + R IT + + D I Sbjct: 330 YDIDNDALEILMNY------DWPGNVRQLENIIERAVVLCQGEIITANHLPDRIKSNSQK 383 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 E+ + +E +++L+D ++ ++ + ++ Q +SR+ Sbjct: 384 ISEN--------IRSENNSLNLYD-IEKNIILKVLQEENFNQTRAAQKLGISRK------ 428 Query: 507 DADRLRKYLARFGL 520 +LR + FGL Sbjct: 429 ---QLRTKMKNFGL 439 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 165/369 (44%), Gaps = 27/369 (7%) Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 G V +I D++R + ER ++ + R+ + +E +A + + Sbjct: 248 GGVMLIVRDVTRLTGL------ERALAAQHIRRSMIGRSSVMRGVFRLVESLA-DTDTTV 300 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G +G GK +A + + + G FV+VNC+ L S LFGHV+GAFTGA Sbjct: 301 LVTGESGTGKELVADALHH---SGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGAT 357 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 + R G ++ A+GG LFLDEIG++ Q LL+ ++EK G R V D +++A T Sbjct: 358 KDRTGRIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATN 417 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT 391 + LR LVA GKFREDLY R+ + LP LR+R+EDI ++ +E V Sbjct: 418 KSLRALVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLD 477 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 + + L Q W GN REL +V A I + E+ ++ ++ Sbjct: 478 SSAQQLL-----VQYDWPGNVRELRHAVEHAFIMAGGNVIPAAALPAEL--MQSGRFSAQ 530 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 + AL + + + A ++ A +L +SR + Sbjct: 531 SAGTGALRHDAPDAAAQGAEW-KQRLSAALKETGGNKAKAARLLGISR---------QTM 580 Query: 512 RKYLARFGL 520 + L G+ Sbjct: 581 YRRLRELGM 589 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 178/385 (46%), Gaps = 39/385 (10%) Query: 145 KEQPRGPGEVTIIDLDLS----RYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNR 195 E+ + ++ +L+LS + + +R +E + L F + + ++ Sbjct: 433 NERKKAEEQIRQANLELSKANKELDTLRNRLEQENMYLRNELDLAFNYQEMVYSSQAISQ 492 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++ ++E+VA + A +LL G +G GK LAR I + ++VNCA + G+ Sbjct: 493 VLTEVEQVAA-TNATVLLQGESGTGKELLARAIHNISPRS---GKPMIKVNCAAIPGELL 548 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA ++ G A+GG LFLDEIGEL + Q LL+ ++E G Sbjct: 549 ESELFGHKKGAFTGAVSNKVGKFELADGGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVG 608 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 D ++IA T R L++ V +G FREDLY RIN++ +P LR+R+EDI +++ Sbjct: 609 GTEVRKLDVRIIAATNRYLKEEVEKGDFREDLYFRINVFPIEVPPLRERKEDIPILVEHF 668 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +++ G ++ F TE A + Q W GN REL + R + + + Sbjct: 669 MDKFNRKYGKNISFVTEE-----AMSQLKQYEWPGNIRELENLLERATIVSRGETLIIPG 723 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 E + + + + + S + R + HV+ +C + +L Sbjct: 724 FESQSQKSKMPLRNNNLS------------LTTVQRNHILHVLDMCDWKITGQGGAAELL 771 Query: 496 DVSRQGKASVNDADRLRKYLARFGL 520 D+ LR + + G+ Sbjct: 772 DM---------RPSTLRDRMQKLGI 787 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 110/448 (24%), Positives = 187/448 (41%), Gaps = 35/448 (7%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT 116 + ++ A+ P +VV ++I++ N D RG + + I +T Sbjct: 38 DAVEGLAAAKDPTIDVVVLDIKMPN--------LSGMDLLRGIKADRPDVEV-IMMTAFA 88 Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP-GEVTIIDLDLSRYNAIASRF-AEE 174 V +++ +P EV++ + A+ R A E Sbjct: 89 TVETAV------------EAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALKDRTRALE 136 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 T+ + ++ + + +E V S A +L+ G +G GK +AR I Sbjct: 137 EALTVRSQFEDLIGQSTQMRSVFKLVETV-SHSTATVLIQGESGTGKELVARAIHY---R 192 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 + FV VNC+ L S LFGHVKG+FTGA +++GL +A+GG +FLDEIG++ Sbjct: 193 SARKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIFLDEIGDV 252 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+ ++E G++ V D ++IA T DL + +GKFREDL+ R+N+ Sbjct: 253 PPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDLFYRLNVI 312 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFR 413 T LP LR R ED+ + ++ +AS V + A A W GN R Sbjct: 313 TIDLPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEALTC------NRWTGNVR 366 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL + R + I ++ + +L L A+A+ + + Sbjct: 367 ELENVIERAVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRLA-MRAFE 425 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQG 501 ++ A+ + ++ + V R Sbjct: 426 RRYLSALLEKNNQNVSSAARAAGVDRSN 453 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 177/375 (47%), Gaps = 21/375 (5%) Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE--ERQQTLDFLKSGIATRNPHFNRMI 197 S K + +T + LSR N+ + + + I + +P +I Sbjct: 219 SEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVSKISQEHYTFGNIFSVSPKMEHVI 278 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 E ++VA ++A +L+NG +G GK LA I Q + + +NC + + A S Sbjct: 279 ELAKQVA-PTKATVLINGESGTGKELLANAIH---QHSDRKDAPLITINCGAIPENLAES 334 Query: 258 TLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 FG+ GAFTGA++ + G A+GG LFLDEIG+L + QA LL+A++E +FY G Sbjct: 335 EFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLNMQAKLLRALQEGSFYRVGG 394 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 VS D ++IA T ++L +LV +FREDLY RIN+ LP LR++ EDI P + Sbjct: 395 IEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLELPPLREKTEDIMPLTKRFI 454 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 + + + G + +A T + W GN REL + R+ F+T G+I++ + Sbjct: 455 DHFSQVHGIEITEIEQAV-----MDTLEEYHWPGNVRELKNVIERLVIFSTQGKISIKAL 509 Query: 437 EDEI---------NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 + ++ + + Q R + ++ + D ++ + ++ ++ Sbjct: 510 PSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELERKTILDSLKKHSFN 569 Query: 488 SAAGRQLFDVSRQGK 502 A + ++ R Sbjct: 570 KAKVARELNIPRSTL 584 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 89/345 (25%), Positives = 157/345 (45%), Gaps = 30/345 (8%) Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 ++ + + ++ +++ I +VA S +L+ G +G GK +A I +L + Sbjct: 329 RSESPVFDSMVGQSHLMLNILDLISQVA-PSDTSVLITGESGTGKEHVADTIHQLSPRK- 386 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 S FV+VNCA L + S LFGH KGAFTGA E R G A+GG +FLDEIG++ Sbjct: 387 --SKPFVKVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPL 444 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 + Q LL+ ++++ G + + + ++I T R+L + +AEGKFR D+Y R+N++ Sbjct: 445 EVQVKLLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPI 504 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 +P LR+R EDI P + + + TG ++ + A + + W GN REL Sbjct: 505 AMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYG------WPGNIREL 558 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 + R A I + A+ + A + + + Sbjct: 559 ENVIERSVLLAKGNSIDTVYLPAHP-------------AVEGIAKAGPPVLKNIFENERD 605 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 H+I++ + + ++ + K L + + G+ Sbjct: 606 HIISVLKACEG------RISGENGAAKILAIPPTTLSSKMKKLGI 644 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 168/358 (46%), Gaps = 31/358 (8%) Query: 176 QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 + + + + + IE+VA + A +L+ G +G GK +AR I Sbjct: 127 GSHRNPIFRSLVGNSTSIRTVRRLIEQVA-DTEASVLVLGESGTGKEVVARNIHAFSS-- 183 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 + + F+ +NC + G+ S LFGH KGAFTGA +R+G AN G LFLDEIG++ Sbjct: 184 -RANKPFIPINCGAIPGELLESELFGHEKGAFTGAITTRQGRFELANSGTLFLDEIGDMP 242 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 Q LL+ ++E+ F GS++ + + ++IA T R+L + + EGKFREDL+ R+N++ Sbjct: 243 LPMQVKLLRVLQERCFERVGSNKSIDVNVRIIAATHRNLEEAIKEGKFREDLFYRLNVFP 302 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 +P LR+R EDI + + R S V +A A + +W GN REL Sbjct: 303 IEMPPLRERAEDIPLIFNELIARIESENRPIVHLMPDAMAAL------SEYSWPGNIREL 356 Query: 416 SASVTRMATFATSGRITLDVVEDEIN---------RLRYNWQESRPSALTALLGAEAENI 466 + V R+ G + + + +I + +E+ ++ + +E I Sbjct: 357 ANLVERLTILYPKGILNKEDLPQKIRSEYKTYFDSDTPESEREALLRVISQGTVSSSEGI 416 Query: 467 DLFD---RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 DL + + +L + ++ + + ++ R L + + ++GLT Sbjct: 417 DLKEHLVKTELALISQALNESDWVVSHAANYLNMRR---------TTLVEKMRKYGLT 465 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 111/389 (28%), Positives = 168/389 (43%), Gaps = 30/389 (7%) Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNR 195 S R E+ + L NA E ++ + I N + Sbjct: 210 DGSIIGSIAAERDITEIVNLTQQLCATNAKVMSLKREIKEINAQPDPFAAICGHNTVLRQ 269 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 I K+AI S P+L+ G +G GK AR I + R G FV VNC + Sbjct: 270 EIATARKIAISS-VPVLIRGESGTGKEVFARAIHTASRRR----GPFVVVNCGAIPPTLF 324 Query: 256 MSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S FG+ GAFTGA + + GL A+GG LFLDEIGEL + Q LL+ +++K+FY Sbjct: 325 ESEFFGYQPGAFTGADKKGKPGLFELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRV 384 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G DR V D ++IA T R+L ++ + +FR DLY R+N+ + LP LRQR++DI + Sbjct: 385 GGDRPVQVDVRIIAATHRNLEAMIEQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHR 444 Query: 375 EVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +++ ASL G + + E +L + W GN REL + R+ A G + Sbjct: 445 GIQQFASLHGREIVKVEPEVMAVFLEY------DWPGNVRELYNVLERLVILADGGVLKF 498 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + ++ + P + L A +RM+ ++ A A + Sbjct: 499 ADLPADLQQFGLLL----PKKIN--LTAAQNLPAATERMERTIIMQALAAAGFRKAQAAK 552 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLTW 522 + R L + R GL Sbjct: 553 KLGIPRS---------TLYYKMQRLGLNT 572 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 179/345 (51%), Gaps = 29/345 (8%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 +GI + +I I K+A +L+ G +G GK +A I + +++ F+ Sbjct: 170 TGIIGDSEEIRDVIYLINKIA-PLDVTVLITGESGVGKEVIANEIFQKSSRKNKQ---FI 225 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +VNCA + + S LFG+ KGAFTGA ++++GL + A+GG +FLDEIG++ + Q LL Sbjct: 226 KVNCAAIPTNLLESELFGYEKGAFTGADKAKKGLFQLADGGTIFLDEIGDIPLEIQPKLL 285 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 +A+++K P G + D ++IA T +DL Q V EGKFR+DLY R+N++ +P LR+ Sbjct: 286 RALQQKEVVPVGGTQIQKLDVRIIAATNKDLSQQVKEGKFRKDLYYRLNVFPIEIPPLRE 345 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+ DI +Y ++++ G SV ++EA ++ W GN REL + R+ Sbjct: 346 RKRDIYALGEYFLKQYNKKYGKSVVLSSEA------YSLLMNYDWPGNVRELQNIIERLI 399 Query: 424 TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQ 483 + + + +D+I ++ + P+ + + +E ++ ++ E +I + + Sbjct: 400 IISDDQTV---INKDQIEKIMF------PNTMLDITKSEKGLKEIIQEIEKEILIDVLKN 450 Query: 484 AKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 + A ++L D L K L ++G+ + ++ Q Sbjct: 451 TGTTRKAAKKL----------KIDQSTLVKKLKKYGINIDEIRHQ 485 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 94/357 (26%), Positives = 170/357 (47%), Gaps = 33/357 (9%) Query: 168 ASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 R E +Q + + + ++ R+ E + +VA+ + +L+ G +G GK LA Sbjct: 262 QRRIKGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVALG-PSTVLIRGESGTGKELLA 320 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGG 284 L ++ G FV+VNCA + + S LFG+V+GAFTGA++ + G ANGG Sbjct: 321 ---HSLHVGSNRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGG 377 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 +FLDEIG++ QA LL+ ++EK G +R + +++A T R L Q++A+ FR Sbjct: 378 TIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFR 437 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATS 403 EDLY R+N+ T +P LR+R +D++ ++Y + ++ G ++ + +A + + Sbjct: 438 EDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALELFENY--- 494 Query: 404 PQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEA 463 W GN REL V R I + + + + + + S +L +L Sbjct: 495 ---NWPGNVRELENVVERAFNLVDGHIIDVMHLPPYLQKFGKSKRHSINKSLPSL----- 546 Query: 464 ENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++++ E + ++ +SR L K +A++G+ Sbjct: 547 -----LEQVEKEAIADALSVTNGNKMQAAKILGISRA---------WLYKKIAQYGI 589 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 181/404 (44%), Gaps = 39/404 (9%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 +P P ++ +I Y + R + + + R+P R+ + IE+VA Sbjct: 104 KPFSPSQIDVILKKAQTYRQLL-RVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERVA-P 161 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 + A +L+ G +G GK +AR E + + S AF++VNCA + + S FGH +GA Sbjct: 162 TDATVLITGESGTGKEMVAR---EFYRRSPRRSQAFIKVNCAAISENLIESEFFGHERGA 218 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E REG A+ G L LDE+ E+ A+ QA LL+ ++E+ F G R + + ++ Sbjct: 219 FTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVNVRI 278 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA + RDL + V +G+FR+DLY R+N++ +P LR+R EDI D+ + R A G Sbjct: 279 IATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKHGVK 338 Query: 387 VR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR--------ITLDVVE 437 V F AR A + + W GN REL +V R + +GR + D + Sbjct: 339 VTGFADSARAALIGY------RWPGNVRELQNTVERAVILSETGRAVTAAALGLPGDFLP 392 Query: 438 ----------DEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 E+ L P+ + + + D ++ + + A RQ Sbjct: 393 GELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQTGGN 452 Query: 488 SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 +S LR L + L + V +S Sbjct: 453 RTQAAAELGIS---------IRTLRNKLQEYRLAGDPVDADFAS 487 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 36/382 (9%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFNRMIEQIEKVAI 205 +P P E++I+ + ++ A RQ + + +++P + E + A Sbjct: 106 KPFDPEELSIMMQKIVSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELA-RTAA 164 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 +S + IL+ G +G+GK LAR + + G FV V+CA L S LFGH KG Sbjct: 165 RSNSTILVLGESGSGKEVLARAVHAESP---RAGGPFVAVSCAALTESLLESELFGHEKG 221 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA R+G +A+GG LFLDE+G++G Q LL+ +EE+ F+ G + + D + Sbjct: 222 SFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVR 281 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T RDLR+ EGKFREDL+ R+N+ +P LR+R+EDI ++ VER + Sbjct: 282 IIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKR 341 Query: 386 SVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + + +A A +A W GN REL + R A AT I L + Sbjct: 342 RIEGVSPDAMGALMA------HDWPGNVRELRNVLERGAVVATGTVIQLSDL-------- 387 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 P+ L A ++ + + ++ HV A+ A + ++ + R Sbjct: 388 -----GLPTRLEAA--SKPGTLASLEEVEKRHVAAVLAHANGNVSQSARILGIDRV---- 436 Query: 505 VNDADRLRKYLARFGLTWEAVQ 526 L + ++GL + + Sbjct: 437 -----TLYNKMRKYGLRRDGEE 453 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 160/368 (43%), Gaps = 33/368 (8%) Query: 160 DLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 + A R EE I + + IE+VA S +L+ G +G Sbjct: 203 QIQSLRAENERLQEEIAHGFRP--ENIIGSSSTMRSVYYHIEQVA-NSATTVLIRGESGT 259 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +A+ + E R++ FV+ NCA L S LFGH KGAFTGA R+G Sbjct: 260 GKELVAKALHEKSSRRNK---PFVKFNCAALPDSIIESELFGHEKGAFTGALAMRKGRFE 316 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 SANGG +FLDEIG++ Q LL+ ++E+ F GS D ++IA T R+L +++ Sbjct: 317 SANGGTIFLDEIGDISLSTQVKLLRVLQEREFERVGSQETRRVDVRVIAATSRNLEEMME 376 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWL 398 G FREDLY R+N++ +P LR+R+ DI D+ +E+ A G +R ++ A + Sbjct: 377 AGTFREDLYYRLNVFPIYMPPLRERKCDILMLADHFIEKFAKRMGRKPIRISSAAIDMLV 436 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 ++ W GN REL + R A I + + + A Sbjct: 437 SY------HWAGNVRELENCIERAVLLAKGQSIKAHHLPPTLQK-----------KSRAE 479 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 A D ++ E ++ ++ S A + ++ + + ++ Sbjct: 480 SSEVATLEDAIQALEREMIVDALKETGSNLAEASRRLGLTERKAGL---------RVKKY 530 Query: 519 GLTWEAVQ 526 G+ + Sbjct: 531 GIDVSRFK 538 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 102/388 (26%), Positives = 167/388 (43%), Gaps = 41/388 (10%) Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIE 198 SS P + + G V +I D++R + E Q I + + + Sbjct: 239 SSAPLESQDGEFLGAVLVIR-DITRLVDLERELQERNQ------FHNIIGASHKMQAVYQ 291 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 +E +A +L+ G +G GK +A+ + + FV VNC+ L + S Sbjct: 292 LLENLA-DFETTVLITGESGTGKELVAKALHHTGS---RAFKPFVSVNCSALAENLLESE 347 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGHVKGAFTGA +G ++A+ G L LDEIG++ Q LL+ ++E+ F G + Sbjct: 348 LFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQ 407 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 + D ++IA T +DL++ V G+FREDLY R+N+ LP LR+R+EDI D+ R Sbjct: 408 PIKVDVRVIACTNQDLKEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTAR 467 Query: 379 HASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 ++ + + A++ + W GN REL S+ R I+L+ + Sbjct: 468 FEKKFNITIPGVSDKVMNAFMNY------HWPGNVRELEHSIERATVLCRDKMISLEHIP 521 Query: 438 DEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 EI A E +I ++ A +L V Sbjct: 522 GEIAEAYSLSGPRLKKQPAADEPNE--------------IIDALKRTGWNKAKAARLLGV 567 Query: 498 SRQGKASVNDADRLRKYLARFGLTWEAV 525 SR+ + + + ++G+ A Sbjct: 568 SRK---------TIYRKIEKYGIQSPAE 586 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 95/361 (26%), Positives = 156/361 (43%), Gaps = 34/361 (9%) Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 R + + +++ + + + + + + A +A +LL G +G GK Sbjct: 177 ERNRLLQEKHRLQKELQKRYSIKNVIGNSRAMQAVFADVHQ-AAPGKATVLLRGESGTGK 235 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I L R + FV +NCA L S LFGH +GAFTGA + R+G A Sbjct: 236 EVIARAIHYLSPRRDKA---FVSLNCAALPESILESELFGHERGAFTGATQERKGRFELA 292 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDEIG++ QA LL+ ++E+ F G + + ++IA T R+L + V++G Sbjct: 293 DGGTLFLDEIGDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSKG 352 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 +FR DLY RIN+ + LP LR+R+EDI +++ + R+ + + EA + ++ Sbjct: 353 EFRADLYYRINVVSIFLPPLRERREDIPALIEHFLARYNAENQRKLTLTPEALQTMVS-- 410 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVE------------------DEINRL 443 W GN REL V R AT I V + Sbjct: 411 ----CYWPGNVRELENCVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTMK 466 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRM------QLEHVIAICRQAKSLSAAGRQLFDV 497 + P A + G + D + + +I + + A +L Sbjct: 467 LSSGMSVPPHAAPDVEGQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWVQAKAARLLGT 526 Query: 498 S 498 + Sbjct: 527 T 527 >UniRef50_P03027 Nif-specific regulatory protein n=14 Tax=Proteobacteria RepID=NIFA_KLEPN Length = 524 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 114/382 (29%), Positives = 181/382 (47%), Gaps = 26/382 (6%) Query: 121 ICWFLLAEARYLPA--RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEER--Q 176 + + LPA R +++ + R + I+ ++ + R R Sbjct: 147 AAHAMARQEERLPACTRFLETVANLIAQTIR----LMILPTSAAQAPQQSPRIERPRACT 202 Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 + F + ++P ++++ I +V + +L+ G +G GK +A I Sbjct: 203 PSRGFGLENMVGKSPAMRQIMDIIRQV-SRWDTTVLVRGESGTGKELIANAIHHNSP--- 258 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 + + AFV+ NCA L + S LFGH KGAFTGA R+G A+GG LFLDEIGE A Sbjct: 259 RAAAAFVKFNCAALPDNLLESELFGHEKGAFTGAVRQRKGRFELADGGTLFLDEIGESSA 318 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 QA LL+ ++E G D + + ++IA T R L + V G FREDLY R+N+ Sbjct: 319 SFQAKLLRILQEGEMERVGGDETLRVNVRIIAATNRHLEEEVRLGHFREDLYYRLNVMPI 378 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELS 416 LP LR+RQEDI + V + A G ++R + A R + + +W GN REL Sbjct: 379 ALPPLRERQEDIAELAHFLVRKIAHSQGRTLRISDGAIRLLMEY------SWPGNVRELE 432 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEH 476 + R A + SG I DV+ +N +++ P AL + AE +D + + Sbjct: 433 NCLERSAVLSESGLIDRDVI-------LFNHRDNPPKALASSGPAEDGWLD-NSLDERQR 484 Query: 477 VIAICRQAKSLSAAGRQLFDVS 498 +IA +A + A +L ++ Sbjct: 485 LIAALEKAGWVQAKAARLLGMT 506 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 105/369 (28%), Positives = 179/369 (48%), Gaps = 19/369 (5%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 +P E+ + Y+ + + R++ + +P + QI +VA Sbjct: 102 KPFDNEEMLLTVDKALDYSKLQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVA-P 160 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 ++ IL+ G +G GK +A+ + L ++ V +NCA + S LFGH +GA Sbjct: 161 AKTSILITGESGTGKELVAQALHRLSPRSNKA---LVSINCAAFAENLLESELFGHERGA 217 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E ++GL+ ++GG LFLDEIGE + Q LL+ ++EKTF G ++SSD ++ Sbjct: 218 FTGALERKKGLMEVSDGGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRI 277 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L Q++ EG FREDLY R+N+ + LP LR R+EDI +ER + G Sbjct: 278 IAATHRNLEQMITEGTFREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCP 337 Query: 387 V-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + + +++A+ + W GN REL + R F + + + + + Sbjct: 338 LPQLSSQAQHDLYHYE------WPGNVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAP 391 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 + +A L E+++ ++ ++ A A+ + A +L +SR Sbjct: 392 HHNGCSETAAMPLQQPLPEHLETIEQKLIQ---AALIDARGVQAKAAELLGISRS----- 443 Query: 506 NDADRLRKY 514 N +L+KY Sbjct: 444 NLQYKLKKY 452 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 98/378 (25%), Positives = 165/378 (43%), Gaps = 44/378 (11%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLK-----SGIATRNPHFNRMIEQIEKVAIKSRAPI 211 + L + +R E ++ +K I T NP F + ++ +E+VA + A + Sbjct: 131 LRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPIFMKALQLVEQVA-PTDASV 189 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G TG GK +AR I L R + + +NCA L + LFGH +GAFTGA Sbjct: 190 LILGETGVGKELIARAIHNLSNRRDR---PLIRLNCAALPATLMENELFGHERGAFTGAN 246 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 + G A+GG LFLDE+G+L + Q+ LL+ ++E F G + D +++A T Sbjct: 247 CRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDVRILAATH 306 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT 391 DL+ L+AEG+FR DLY R+N++ P LR+R+EDI + + V+ G S+ Sbjct: 307 VDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNGKSIELIP 366 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 + W GN REL + R + ++ +D + Sbjct: 367 R-----HVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEIDSLP-------------- 407 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDA 508 ++ A+A I + + EH+I ++ + R Sbjct: 408 ----KMVIAADAAPISPLEVTEREHIIRALETTAWRVGGPKGAAEILGLKR--------- 454 Query: 509 DRLRKYLARFGLTWEAVQ 526 L+ + + G+ + + Sbjct: 455 TTLQARMRKLGINRQGLP 472 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 165/384 (42%), Gaps = 32/384 (8%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIID---LDLSRYNAIASRFAEERQQTLDFLKSGIATRNP 191 ++ +P E+ ++ L + R R E + + I +P Sbjct: 91 EAMKHGASDYITKPFKRDELVLVIEKILQMQRLEGEVDRLRSELGEK--YTFGNIIGESP 148 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 ++ + I V+ + A IL+ G TG GK +A+ I + FV+V+C++L Sbjct: 149 KIKKIYDIISHVSG-TEANILIQGETGTGKELVAKAIHYNSARNNHR---FVKVDCSSLT 204 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 S LFGH KGAFTGA + R G R A+ G +FLDEIG + QA LL+ +++ F Sbjct: 205 ETLLESELFGHEKGAFTGATKDRVGRFRKADHGTIFLDEIGNISLAVQAKLLRVLQDSEF 264 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 GSD + D ++IA T DL V +G FR DL+ R+N+ LP LR+R EDI Sbjct: 265 EAVGSDESIKVDVRIIAATNADLEGCVEKGLFRSDLFYRLNVIRIFLPPLRERTEDIPLL 324 Query: 372 LDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 + + H +V F+ + ++A W GN REL + R R Sbjct: 325 AAHFLAIHNKKNRKTVEGFSRDTLNILTSYA------WPGNIRELENVIERAVILCKKNR 378 Query: 431 ITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 IT + V ++ L G + +L ++ + + +I + Sbjct: 379 ITPEDVPLYQEKM---------GTRPGLSGKPLQ--ELLEQTERQIIINTLEANDADKEK 427 Query: 491 GRQLFDVSRQGKASVNDADRLRKY 514 ++ +SR ++L KY Sbjct: 428 TAKILKISRASL-----YNKLNKY 446 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 171/393 (43%), Gaps = 36/393 (9%) Query: 130 RYLPARLIQSSPPRKKEQ--PRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIA 187 +L R +Q S + + + ++ + A + EE +QT +F I Sbjct: 126 THLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIKQTKNF--DEIV 183 Query: 188 TRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNC 247 T++ F +++ +E+VA + +L+ G +G GK LAR + L +++ V++NC Sbjct: 184 TQSKAFQKVLRSVEQVA-PTNTTVLILGESGTGKELLARAVHNLSSRKNK---PLVKINC 239 Query: 248 ATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIE 307 A L S LFGH KGAFTGA + G A+GG +FLDEIGE+ D QA LL+ ++ Sbjct: 240 AALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEIGEMPLDLQAKLLRVLQ 299 Query: 308 EKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQED 367 E F GS + + + ++IA T RDL AEG+FREDLY R++++ LR R+ED Sbjct: 300 EGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRLSVFPIVSLPLRTRKED 359 Query: 368 IEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFAT 427 I + + +H + G ++ T W GN REL V R + Sbjct: 360 IPLLVRHFCAKHGADMGKTIDTIPATV-----LDTLTDYHWPGNIRELENLVQRALIMSP 414 Query: 428 SGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 + + W +P L + + + + H+I++ Sbjct: 415 GRTLVIGD-----------WLRKKP------LANQKATLMTMEEAERAHIISVLELTHWK 457 Query: 488 SAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + + L + + G+ Sbjct: 458 VS------GDNGAARLLDMIPTTLDSRMKKLGI 484 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 100/381 (26%), Positives = 167/381 (43%), Gaps = 26/381 (6%) Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 E+P ++ + + + + + D +GI +++ Q+E+V Sbjct: 100 FIEKPFDNDKLLLTVSRAVEHCRMKGEIKHLKNKLGDM-NTGIIGEKSGLRQVMLQVERV 158 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A + A +L++G +G GK +A I + + S FV +NC + S LFGH Sbjct: 159 AE-TDATVLIHGESGTGKELIAWAIHD---RSKRVSQPFVAINCGAIPLTLMESELFGHE 214 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFT A+E++ G ANGG LFLDEIGEL D Q LL+ +EE+ G + + + Sbjct: 215 KGAFTDAKETQAGTFERANGGTLFLDEIGELPLDAQVKLLRVLEERKITRIGGKKAIPVN 274 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +++A T R+L + V GKFR DL R+N++T LP LR+R+EDI + + +H SL Sbjct: 275 VRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTIQLPPLRERKEDIPLLAAFFLRKHNSLL 334 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 S+ EA A+ W GN R+L +V +I + I Sbjct: 335 NLSIESITPEAMDQLCAY------DWPGNVRDLENAVQSAMILCVDRQIHPGHLPARIKS 388 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + + A + D + +++ ++ + ++SR+ Sbjct: 389 YQMERLTAPQEA-----EEDTSLRDTNSLAEKARILSALQKHNYNRTLTAEALNISRK-- 441 Query: 503 ASVNDADRLRKYLARFGLTWE 523 L + R+ L E Sbjct: 442 -------TLFNKMKRYNLGNE 455 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 165/375 (44%), Gaps = 29/375 (7%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVA 204 +P P E + + ++Q + + R+ ++ + IE VA Sbjct: 104 ITKPLDPEETAHLVSKALAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVA 163 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 + A +L+ G +G GK +AR I L R V V+C L S LFGH K Sbjct: 164 -PTDATVLITGESGTGKEVVARAIHALSTRRFH---PMVPVHCGALTETLLESELFGHEK 219 Query: 265 GAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDF 324 GAFTGA+ ++G A GG +FLDEIG++ Q LL+ ++E+ G ++ + DF Sbjct: 220 GAFTGAQYRKKGKFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDF 279 Query: 325 QLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG 384 +++A T +DL +L+ EG FR DL+ R+N++ LP LR R+EDI +++ ++ A Sbjct: 280 RIVAATNKDLEKLIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMN 339 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 V R A A Q W GN REL +V R A E E+ Sbjct: 340 KRVT-----RVASPAMNMLQQYPWPGNVRELENAVERAMVVAQ---------EPELRETD 385 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 + + + +++ G + ++ EH++ + + ++ D+ R Sbjct: 386 FVLKVKAAATMSSTNGTG--TPKTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRV---- 439 Query: 505 VNDADRLRKYLARFG 519 L + R+G Sbjct: 440 -----TLHHKIKRYG 449 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 186/388 (47%), Gaps = 34/388 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEER-----------QQTLDFLKSGIATRNPHFNRMIE 198 G + I L ++ R A R + L I ++P ++ Sbjct: 111 GAHDYLIKPFSLEELTSVLDRLARHRTMDTASRGLREKLRLQGGFGNIVGQSPEMEKLYR 170 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 + KVA ++ P+L+ G +G GK +AR I H S F+ V+C+++ S Sbjct: 171 ILSKVA-QTTHPVLILGESGTGKELVARAIHV---HGHYASKPFLPVDCSSIVPTLMESE 226 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGHVKGAFTGA +R+GLL +A GG +FLDEIGE+ D QA LL+A++EK P G+ Sbjct: 227 LFGHVKGAFTGATRARDGLLVAAEGGTVFLDEIGEMPLDLQAKLLRALQEKEVRPVGATH 286 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 +V + +++A T R+L ++V +G+FR DLY R+N+ LP LR+R+EDI + ++R Sbjct: 287 RVKINVRILAATNRNLAEMVEQGRFRRDLYYRLNVVKLVLPPLRERREDIPLLAAHFLDR 346 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 G R + EA A + W GN RELS ++ R +F + ++ + Sbjct: 347 IGREYGKKFRLSAEAL------AMISEYPWPGNVRELSNALDRACSFCSGEQVQAGDLTS 400 Query: 439 EINRL---RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + Q RP L AEAE + L + ++ +++ Q K +L Sbjct: 401 PVKDFYLQHAAMQRKRPRTRAELPEAEAEVLSLAE-IEKRAILSTLAQVKGDKLLAARLL 459 Query: 496 DVSRQGKASVNDADRLRKYLARFGLTWE 523 D+ + L + L +G+ E Sbjct: 460 DIGK---------TTLYRKLKEYGVAEE 478 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 95/424 (22%), Positives = 184/424 (43%), Gaps = 31/424 (7%) Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + L HI T + + + I+ +P E+ ++ + Sbjct: 60 DGLTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLK 119 Query: 164 YNAIAS--RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + + ++ E + D GI + + + ++I+ VA K+ P+L+ G +G GK Sbjct: 120 FRTLEKEVKYLSELVKKKDE-FEGIVSTSSVMKEIFDKIDAVA-KTDVPVLIQGESGTGK 177 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A I + + + ++++NCA + S LFG+ KGAFTGA E+++G A Sbjct: 178 ELIANAIQKQSLRKEK---PYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELA 234 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 NGG +F DEIG++ QA LL+ IE+ Y G + + + I T ++L++L+ Sbjct: 235 NGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAE 294 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAF 400 KFREDL+ RIN+ +P L++R+EDI ++ ++ + G ++ + A A L++ Sbjct: 295 KFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSY 354 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 + GN REL ++ R + G I + + +E + L S Sbjct: 355 ------DYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLS--------SFQKKCFI 400 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + + + +I ++ + +SR+ L + + +G+ Sbjct: 401 SNFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKA---------LWEKIKFYGI 451 Query: 521 TWEA 524 Sbjct: 452 EPNP 455 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 420 bits (1080), Expect = e-116, Method: Composition-based stats. Identities = 100/341 (29%), Positives = 160/341 (46%), Gaps = 17/341 (4%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 ++ + GI + P +++E I++VA KS + +LL G +G GK A I EL Sbjct: 240 QRTQRSPVFPGIIGKGPALQKILEIIKQVA-KSESTVLLRGESGTGKELFAHSIHELSS- 297 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGE 293 + SG FV +NCA + S LFG+ +G+FTGAR+ + G + AN G LFLDEIG+ Sbjct: 298 --RNSGPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPGKVELANNGTLFLDEIGD 355 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 + QA LL+ I+EK P G + + +LIA T R+L +++ G FREDL+ R+N+ Sbjct: 356 MPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEEMIGTGTFREDLFFRLNV 415 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 +P LRQR ED E L Y + ++ L + + A A + W GN R Sbjct: 416 IPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYA-----ALQQLVKYHWPGNIR 470 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL V + I+ + + I + +E++P + + ++ + + Sbjct: 471 ELENLVEYLVNIHNQDIISPEDLPITIQ--QPIKEENQPIGIQPVEPQTRKSSGQRSQAE 528 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 L ++ VS R++KY Sbjct: 529 LIQMLNRFGWHTDGKKKAAAALGVS-----LATLYRRIKKY 564 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 420 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 165/342 (48%), Gaps = 22/342 (6%) Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 ++ +T + + +P ++ ++I VA + + +L+ G +G GK +A I Sbjct: 273 QKNRTAQDIMKDMVAESPQMKKLKDEISIVATST-STVLITGESGTGKEGVAHAIHL--- 328 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIG 292 + G F++VNCA++ S +FG+V GAFTGA + + G + A+GG LFLDEIG Sbjct: 329 GSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLDEIG 388 Query: 293 ELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARIN 352 E+ QA LL+ ++++ GS + + +++A T + L +A+G+FR+DLY R+N Sbjct: 389 EMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYYRLN 448 Query: 353 LWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNF 412 + LP LR+R EDIEP + + + + +V T A AT Q +W GN Sbjct: 449 VINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPN-----AMATLLQYSWPGNI 503 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 REL V R + SG I L + +I + + + D ++ Sbjct: 504 RELENVVERAVNYTRSGLIELIHLPHQIISGNTALGQ-------VMNKKTIRHQDRLGQI 556 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + + + A +A +L ++SR D+L KY Sbjct: 557 ERDMIAAALEKAGGNKTKAAKLLNLSRSRL-----YDKLNKY 593 >UniRef50_A0LH02 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LH02_SYNFM Length = 510 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 170/352 (48%), Gaps = 32/352 (9%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGI--------ATRNPHFNRMIEQIEKVAIK 206 T+I +S + R A+ + K GI R+P + IEKVA Sbjct: 159 TLIAQFVSLNRQVKLREAKLLRDCSPSGKKGIEAGDRFFMVGRSPSMLVVQRHIEKVA-P 217 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S+A +LL G +G GK+ +A+ + EL S FV++NCA+L + S LFG+ KGA Sbjct: 218 SKASVLLLGESGTGKTLVAQMLHELSIRS---SAPFVKINCASLPENLLESELFGYEKGA 274 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA S+ G + A GG +FLDE+GEL QA LL+ +++K F GS R D ++ Sbjct: 275 FTGAVRSKPGRIEEAEGGTVFLDEVGELTPALQAKLLRFLQDKEFERLGSTRTRVVDVRV 334 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 +A T RDL +VAEG FREDLY R+N++ +P LR R+EDI L + ++R + G Sbjct: 335 LAATNRDLAAVVAEGTFREDLYYRLNVFPIQIPPLRARKEDIPDLLHHFLDRISREYGRR 394 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + A + W GN RE+ V RM A I ++V+ ++ Sbjct: 395 IGITNAAMALLAGY------DWPGNVREMENLVERMVIMADEDEIGVNVLPPFLSE---- 444 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + G+ E + ++M+ + ++A + + ++ Sbjct: 445 ----------QMTGSGGETLSRIEKMERKEILAALERNGWNQTRTAKELGIT 486 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 169/386 (43%), Gaps = 28/386 (7%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATR 189 + + + E+ + LS+ +A A +E R + + + Sbjct: 197 VNPIFVDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAFANYIGK 256 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + ++ K A S A +L+ G +G GK +A I R G F+ VNC Sbjct: 257 SGKVVDVLALASK-AADSSANVLIRGESGTGKEVIAEGIHYASGRRR---GPFIRVNCGA 312 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + G S LFGH KGAFTGA + G AN G +FLDEIGEL + Q LL+ +++K Sbjct: 313 IPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQK 372 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 F G + + D ++IA T RDL +V EG FR+DLY R+N+ LP LR R +DI Sbjct: 373 EFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDIP 432 Query: 370 PNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 +++ +E+ + VR +A + ++ + W GN REL + R+ T + Sbjct: 433 LLVEHFIEKISKENKKDVRGITPDAMQMFMHY------RWPGNVRELENVIERVITLMDT 486 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 IT ++ I + + + + ++ + + + RQ S + Sbjct: 487 DLITAAMLPSYIKGDIAGRE---------VQSLADDTVLPWEEYEKQIIANALRQGTSFN 537 Query: 489 AAGRQLFDVSRQGKASVNDADRLRKY 514 A +L +S A + RKY Sbjct: 538 GAA-KLLRIS-----HKTVAAKARKY 557 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 104/400 (26%), Positives = 185/400 (46%), Gaps = 32/400 (8%) Query: 135 RLIQSSPPRKKEQPRGPGEVT-IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 +Q+ ++P ++ + ++R +R + I ++ Sbjct: 108 NAMQAGATNFIQKPWDNEKLLADVGAAIARRRVEEENLQLKRALKQRYNFENIIGKSEPM 167 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 R+ + + ++A SR+ +LL G +G GK +A+ I + + FV +N ++ D Sbjct: 168 LRIFDLVTQIA-PSRSTVLLQGESGTGKELIAKAIHMNSTRKDRA---FVPINTGSMPTD 223 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 STLFGHVKGAFT A S++GL A+GG LFLDEIG + + QA +L+ ++++ F Sbjct: 224 LLESTLFGHVKGAFTSAIASKKGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMH 283 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G +++ D ++IA T DLRQLV EGKFREDL+ R+N+ T LP LRQR+ D+ + Sbjct: 284 LGGVQEIQVDVRIIAATNVDLRQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCE 343 Query: 374 YEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + +++ + R EA R L + W+GN REL + R A IT Sbjct: 344 HFIKKFCEENAKPLMRMTPEALRPLLDY------NWQGNVRELENVIERAVVLANGPSIT 397 Query: 433 LDVVEDEI--NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 +D++ D + ++ E+RP A ++ + + ++ + + Sbjct: 398 IDLLPDNVVGRGSSLSFVETRPDA---------SLFEIMEDCERRIIVDMLEKVGWNQTE 448 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHS 530 + F + L + + R + + + + Sbjct: 449 AAEKFRIP---------LSTLNQKIKRLSIEIKKKASREA 479 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 93/357 (26%), Positives = 165/357 (46%), Gaps = 34/357 (9%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 R ++ + F G ++ + + I+K+A+ + + +LL G +G GK+ +A+ Sbjct: 179 EQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAM-TDSTVLLLGESGVGKTLIAKA 237 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I L + + + F+ VNCA + + LFG+ KGAFTGA S++G ANGG +F Sbjct: 238 IHTLSERKDK---PFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTIF 294 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIGEL Q+ LL+ I+EK G+++ + + ++IA T +DL +VA G+FREDL Sbjct: 295 LDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFREDL 354 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQAT 407 Y R+N+ +P LR+R+EDI + + +++ + EA A + + Sbjct: 355 YYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHINIEKEAMEALVNY------N 408 Query: 408 WRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENID 467 W GN REL + R+ IT + V Q PS Sbjct: 409 WPGNIRELENLIERLVVINNKD-ITKEDVLLATKINSNKLQTDIPS-------------- 453 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + + + E + + + + ++ ++ +L + ++ + E Sbjct: 454 IIESTEKEAIKKALEKCGYVKSKAAKILGLT---------LRQLDYRIKKYNIPIER 501 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 98/367 (26%), Positives = 162/367 (44%), Gaps = 23/367 (6%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKS--GIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ L + R +E + D + ++P R I+ KV ++ +L+ Sbjct: 122 LNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKV-CSVKSTVLIL 180 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ES 273 G +G GK A+ I E +A F+ +NC + S LFG+ +GAF+GA + Sbjct: 181 GESGVGKEVFAKAIHEASEA---AKAPFISINCGAIPEALFESELFGYERGAFSGANSKG 237 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 ++G + A GG LFLDEIGE+ D Q LL+ ++E+ +Y G +++++ DF++IA T RD Sbjct: 238 KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRD 297 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEA 393 L++ + +G FREDLY R+N+ + +P LR+R+EDI + + +R + Sbjct: 298 LQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSS 357 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 W GN REL V R+ FAT G I + + N S Sbjct: 358 I-----MHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAH--S 410 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 L + + D + + + R + V+R L Sbjct: 411 LLLSNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRA---------TLYN 461 Query: 514 YLARFGL 520 L + GL Sbjct: 462 RLKKLGL 468 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 171/376 (45%), Gaps = 33/376 (8%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + ++ + +++ N+ S + E + + F ++ I +P R+ E I+K+A Sbjct: 225 QEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIA-P 283 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 +L+ G +G GK +A + G+F++VNCA + + + LFG+V+GA Sbjct: 284 YNTTVLIRGESGTGKELVAHALHVESGR----PGSFIKVNCAAIPENLFEAELFGYVEGA 339 Query: 267 FTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 FTGA++ + G AN G +FLDEIG++ QA LL+ ++EK G + + + Sbjct: 340 FTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVR 399 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T ++L +L+ + KFREDLY R+N+ + +P LR+R ED+ + Y +E+ G Sbjct: 400 VIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGT 459 Query: 386 SVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 +V + E ++ + +W GN REL + R I + I Sbjct: 460 NVTGISPEVMDIFMNY------SWPGNIRELENVLERCFNLVEGKVIEKKYLPPYILGEE 513 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 +E +L + + E + A +AK + L +SR Sbjct: 514 LKNKE---------FPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISR----- 559 Query: 505 VNDADRLRKYLARFGL 520 L K L F L Sbjct: 560 ----QWLHKRLKYFNL 571 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 89/362 (24%), Positives = 147/362 (40%), Gaps = 39/362 (10%) Query: 161 LSRYNAIASRFAEERQ-QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 + R + +Q + G+ R+ + I+ VA + +L+ G +G Sbjct: 400 IRRAILHQEEIKKLKQGVSESAGFEGMIGRDYRMQTIYRLIQDVA-PTDVTVLIQGESGT 458 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +A+ I R FV +NC+ S LFGH KGAFTGA R G Sbjct: 459 GKELVAKAIHARSSRR---DNPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFE 515 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A GG +FLDEI E+ Q LL+ ++ + F G ++ + D +++A T +DL + V Sbjct: 516 QARGGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVK 575 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWL 398 G+FREDLY R+++ LP LR+R D + +ER A++ + ++ A RA L Sbjct: 576 AGRFREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALL 635 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 + +W GN REL + + I L+ + D++ Sbjct: 636 DY------SWPGNVRELENVMEQAVVLCKGETIALEDLPDKLQ----------------- 672 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 GA + + ++ + + R L L + Sbjct: 673 -GARPARRKTIEDQEKNLLLETLEACGWNKKMAAERLGIGRS---------TLYAKLKKH 722 Query: 519 GL 520 G+ Sbjct: 723 GI 724 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 173/393 (44%), Gaps = 38/393 (9%) Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRY------NAIASRFAEERQQTLDFLKSGIATRNP 191 + P R +T ++D+ N + ++ + GI ++ Sbjct: 151 DTIPERILNGISTQLSITFHNIDVQEQLKTFQGNIRDFPKEVKEEKKSEHGFHGIVGQSE 210 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 + EQI +VA S++ +++ G TG GK +A+ + EL + + + +NCA + Sbjct: 211 AMQFIFEQITQVA-PSQSNVIIFGETGTGKELIAQAVHELSEFSGKK---MIRINCAAIP 266 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 + S LFGH KG+FTGA E R+G A+ +FLDEIGEL + QA LL+ ++EK Sbjct: 267 ANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQARLLRVLQEKEI 326 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 G ++++ + ++I T R+L + VAEG+FR DLY R+N++ LP LR+R+EDI Sbjct: 327 ERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPPLRERKEDIPLL 386 Query: 372 LDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 DY +E+ TG + F+ + +A W GN REL V R A Sbjct: 387 ADYFLEKLYPKTGKKINGFSQNVVKMMMA------NPWLGNIRELENMVERSMLTAKGDI 440 Query: 431 ITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 I IN + + + + E+++ I ++ Sbjct: 441 IREMDFPKVINYQNTDQEV---------------QVKTLQEFEKEYILKIIKKCNG---- 481 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 ++F K L + + G+ + Sbjct: 482 --RIFGEIGAAKLLGLPPTTLISKMQKLGIEKK 512 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 161/367 (43%), Gaps = 23/367 (6%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKS--GIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ L + R +E + D + ++P R I+ KV ++ +L+ Sbjct: 206 LNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKV-CSVKSTVLIL 264 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR-ES 273 G +G GK A+ I E +A F+ +NC + S LFG+ +GAF+GA + Sbjct: 265 GESGVGKEVFAKAIHEASEA---AKAPFISINCGAIPEALFESELFGYERGAFSGANSKG 321 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 ++G + A GG LFLDEIGE+ D Q LL+ ++E+ +Y G +++++ DF++IA T RD Sbjct: 322 KKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRD 381 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEA 393 L++ + +G FREDLY R+N+ + +P LR+R+EDI + + +R + Sbjct: 382 LQEEMRKGTFREDLYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSS 441 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 W GN REL V R+ FAT G I + + N S Sbjct: 442 I-----MHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAH--S 494 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 L + + D + + + R + V+R L Sbjct: 495 LLLSNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRA---------TLYN 545 Query: 514 YLARFGL 520 L + L Sbjct: 546 RLKKLRL 552 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 98/416 (23%), Positives = 189/416 (45%), Gaps = 22/416 (5%) Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 EKE T L + + ++ + ++ + Sbjct: 115 EKERISFAGVPVTLQGTTVGVLTVDRLFDQDISLEEDIQLLSIVAAMVAQFVSLNRQVKD 174 Query: 164 YNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 R + + L I ++ ++ + +EKVA +RA +LL G +G GK Sbjct: 175 REENLRRENQNLKTRLSSSFQRFFIVGKSSSMLQVRQMMEKVA-PTRATVLLLGESGTGK 233 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 + +A I EL + + F++VNCA+L + S LFG+ KGAFTGA S+ G A Sbjct: 234 TLIAGIIHELSE---RGKFPFIKVNCASLPENLLESELFGYEKGAFTGAERSKPGRFEEA 290 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 + G +FLDEIGE+ A QA LL+ ++E+ F G + D ++IA T ++L + V EG Sbjct: 291 HRGTIFLDEIGEMPAGLQAKLLRFLQEREFERLGGVKTHRVDVRVIAATNKELDKEVQEG 350 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 +FREDLY R+N++ +P LR+R+EDI +++ +++ A G + + + + + Sbjct: 351 RFREDLYYRLNVFPIWVPSLRERREDIPSLINHFLDKMAREYGRRLVLSNSSLDYLVEYE 410 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN RE+ + +++ + + L + ++ + + Sbjct: 411 ------WPGNIREMENLMEKLSIMSEGQIVALKDLPSDMQ---------QEKVCPGKVQE 455 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 +A + L D M+ + +++ ++ + + + ++++ L +Y++R Sbjct: 456 QARDHSLLD-MEKKEILSALQRNSWIQSRAARELGLTQRQMGYRIKKFNLEEYVSR 510 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 102/427 (23%), Positives = 188/427 (44%), Gaps = 43/427 (10%) Query: 106 EDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP---GEVTIIDLDLS 162 E +HI T +A+ + +Y+ A I + G + +DL Sbjct: 172 ESTRMHIVAKTGIAETAQLQKVKGKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYK 231 Query: 163 RYNAIASRFAEERQQ-----TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + I + + + + Q + + I ++ N+ + +K A K+ + +L+ G + Sbjct: 232 KIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKK-AAKTNSNVLIRGES 290 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREG 276 G GK A I + + G F+++NCA + D S LFG+ GAFTGA++ + G Sbjct: 291 GTGKELFAHAIHMESE---RVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIG 347 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG +FLDEIG++ QA LL+ ++E+ G+ R D ++I+ T RDL + Sbjct: 348 KFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEK 407 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 ++ EG+FREDLY R+N+ T +P LR+R+EDI+ +Y +E+ + G + F+ EA Sbjct: 408 MIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMS 467 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGR-ITLDVVEDEINRLRYNWQESRPSA 454 + + W G R+L + R I I +Y ++S Sbjct: 468 CLMNYK------WEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDS---- 517 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + L ++++ + ++ + ++SR L + Sbjct: 518 ---------DLNKLINQVEKDIILETLIYCNWNKTLAAKKLNISR---------TSLYEK 559 Query: 515 LARFGLT 521 +A+ + Sbjct: 560 IAKHNIA 566 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 102/370 (27%), Positives = 169/370 (45%), Gaps = 21/370 (5%) Query: 151 PGEVTIIDLDLSRYNAIASRFAE----ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 P + I++L + R ++S E + L + I +P + + +V + Sbjct: 114 PFDNDILELAVKRALKVSSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEV-TR 172 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 + + +L+ G +G GK ++R I + G FV +NCA + + S LFG+ KGA Sbjct: 173 TDSTVLVTGESGTGKELVSRAIHYNS---DRKCGPFVALNCAAIPENLLESELFGYEKGA 229 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA ++++G A GG FLDEI E+ A QA +L+ IE K G + D ++ Sbjct: 230 FTGAEKTKKGRFELAAGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRI 289 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD- 385 I T RDL Q+V EGKFR+DLY RI+++ LP LR+R DI P + V ++ G Sbjct: 290 ICATNRDLVQMVKEGKFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKT 349 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + ++E + + + W GN REL + R +G I + + I Sbjct: 350 PIVLSSEVEKILI------KHKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYT 403 Query: 446 NWQ-ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 + S ++ N D ++ + V ++K+ +L ++R Sbjct: 404 PPELNENISQNNSVNFDIPPNGLSLDDLEKQLVAKALERSKNNITKAAKLLGLTR----- 458 Query: 505 VNDADRLRKY 514 RL+KY Sbjct: 459 GTFRYRLQKY 468 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 97/391 (24%), Positives = 171/391 (43%), Gaps = 35/391 (8%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATR 189 R+ RL++ + K+ I D+++ + + I + Sbjct: 118 RHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKEL------KGRYAFGKIIGQ 171 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + + + + VA +S++ +L+ G +G GK +A I E + G F++VNCA Sbjct: 172 SEKMRELFDLLPVVA-QSKSTVLIEGESGTGKELIAHAIHENSPRK---DGPFIKVNCAA 227 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 L S LFGHV+GAFTGA S+ G A+GG LFLDEIGE+ A Q LL+ ++E+ Sbjct: 228 LSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKLLRVLQEE 287 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 F G + + D ++IA T RDL+ + G FR DLY R+ + LP LR+R+EDI Sbjct: 288 EFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLRERREDIP 347 Query: 370 PNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 + + R+ + G + V + EA+ + ++ GN REL + +T Sbjct: 348 LLISSFLSRYNAEFGKNVVGLSQEAQNILM------NHSYPGNIRELQNIIEHAVLLSTG 401 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 I + + ++ + S+ + + + + + + + + + Sbjct: 402 RTIGVRELPRDLAPIPEE------SSFADVALSRSNALRTMEDVMIR---KAVEKTQGNM 452 Query: 489 AAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 + +L + R L + L G Sbjct: 453 SQAAKLLGIGRS---------TLWRKLREMG 474 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 102/398 (25%), Positives = 180/398 (45%), Gaps = 32/398 (8%) Query: 118 VAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQ 177 Q + + + L+ P +K++ G II ++ + + + Sbjct: 274 QNQELHLSVKPSNAVHHVLVDKIPIYEKKERIGS---MIIVKEIEKVRQFVNHLS---GN 327 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + + ++P F + + ++A + + +L+ G +G GK +A+ I + R++ Sbjct: 328 QAKITFADMIGQHPCFIEKMNEA-RLAAATDSNVLILGESGTGKEMVAQAIHNESKRRNK 386 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGA 296 F+ +NC + D S LFG+V GAFTGA++ G ANGG LFLDEIGE+ Sbjct: 387 ---PFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEIGEMSL 443 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 + Q +LL+ I+EK G + + D ++IA T +DLR+ V +G FREDL+ R+N+ Sbjct: 444 EMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRLNVMPI 503 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFREL 415 LP LR+R+EDI + + +ER A ++ A + Q W GN REL Sbjct: 504 VLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALM------QYDWPGNIREL 557 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDL-FDRMQL 474 + R+ T +T + +EI + + Q EN+D+ + ++ Sbjct: 558 QNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQ-------------VRENVDISRNEIKK 604 Query: 475 EHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + +I +Q + + +SR D + Sbjct: 605 QSIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNIW 642 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 155/334 (46%), Gaps = 22/334 (6%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 R + I + I+K+A K+ A L+ G +G GK +A Sbjct: 219 EDRQVNAIPPPSPDRPANIIGNTKPMVSLYSMIDKIA-KTSATTLVLGESGVGKELVASA 277 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I + + F++ NCA L + S LFGH KGAFTGA +R G AN G +F Sbjct: 278 IHFKSR---RAEKPFIKFNCAALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIF 334 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDE+GEL QA LL+ ++EK F G + + D ++IA T R+L +L+ +G+FREDL Sbjct: 335 LDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDL 394 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQA 406 + R+N++ T+P LR+R+ DI DY VE++ V R +T A + + Sbjct: 395 FYRLNIFPITVPPLRERKTDILLLADYFVEKYNKANQKGVRRISTTAIDMLMRY------ 448 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL + R + I + + ++ S+ T G+ + + Sbjct: 449 HWPGNVRELQNCIERAVILSEDNVIHGYHLPPTL--------QTAESSGTPYTGSLQQKL 500 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 D ++ E +I ++ + + +S + Sbjct: 501 DAIEK---EMIIEALKRTQGNMSRAAMQLGLSER 531 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 92/332 (27%), Positives = 164/332 (49%), Gaps = 20/332 (6%) Query: 169 SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRI 228 Q + + ++P F +++ + KVA + A +LL G +G GK +A+ I Sbjct: 176 ENIILRAQLKDRYNFPNLVGQSPSFQAVLKTVMKVA-STDATVLLFGESGTGKELIAKTI 234 Query: 229 LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFL 288 + + G FV +NCA + + + LFG KGAFTGA + R G ANGG +FL Sbjct: 235 HFQSK---RAKGPFVAINCAAIPENLLEAELFGSEKGAFTGAVK-RIGKFEQANGGTIFL 290 Query: 289 DEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLY 348 DEI EL Q LL+ ++E+T P GS + + D +LI+ T +DL + + +G FREDL+ Sbjct: 291 DEIAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLF 350 Query: 349 ARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATW 408 R+N+ +P LR+R+EDI ++Y ++ ++ SV + EA + +++ W Sbjct: 351 WRLNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSVSIDEEALKVLVSY------DW 404 Query: 409 RGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDL 468 GN REL+ ++ R+ S +I + + D + + + +P +L L + Sbjct: 405 PGNVRELANTIERLVVMTESSKIKVYDLPDTVRGV----FKLKPYSLGDL-----KLPTE 455 Query: 469 FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + ++ ++ + Q ++ + Sbjct: 456 VEELERIRIMDTLPKFNFNIRKTAQALGLTER 487 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 174/387 (44%), Gaps = 29/387 (7%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF--LKSGIATRNPHFN 194 +++ +P E+ ++ ++ + R+Q D I + Sbjct: 94 MKAGAVDYITKPLEFDELLLLLDRVAERRTLIRENEILRRQLKDQGVTTDAIIFTSQKMA 153 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 + +VA SRA +LL G +G GK LAR I +L + + VNC L Sbjct: 154 ALTSMAARVA-SSRATVLLQGESGTGKELLARLIHQLSPRSTR---PIITVNCGALPESL 209 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KGAFTGA R G A+GG LFLDEIGEL Q LL+ ++E+ F Sbjct: 210 IESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFLQEREFQRV 269 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G + + +D ++I+ T RDL +V E KFREDLY R+N+ ++P LR+R+EDI +D+ Sbjct: 270 GGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERREDIPALIDH 329 Query: 375 EVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +ER A+ G + ++EAR + + + GN REL + R A + I + Sbjct: 330 FLERFAAENGKKISGISSEARDLLMKY------DYPGNVRELENIIERAVVIARNEIIYM 383 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + + + L L GA + ++ + + +A + Sbjct: 384 EDLPFREDTLVATSGGVPEEGEGRLRGA-------IENLEKQMIQDAMEKAGDHQTRAAE 436 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGL 520 + +S + LR L ++GL Sbjct: 437 MLGLSER---------MLRYKLKKYGL 454 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 124/483 (25%), Positives = 200/483 (41%), Gaps = 38/483 (7%) Query: 30 TLCLCQQESLVIDRLELLHDARSRSL-FETLKRDIASVSPETEVVSVEI---------EL 79 L + ++ ++ L + + + SL + D +V E I + Sbjct: 45 ILAVLHEDLGLLHGLVSICNPKDGSLQVGAVHSDSETVVRACESTRYRIGEGVFGNILKH 104 Query: 80 HNPWDFEEVYAC--LHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI 137 N + A D Y+ I GT + L A+ L+ Sbjct: 105 GNSVVLGRIDAEPRFLDRLALYDMDLPFIAVPIKAVDGTTIG----VLAAQPDRRADELM 160 Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF--LKSGIATRNPHFNR 195 + R + + ++L + E R++ ++ + R Sbjct: 161 PERTRLMEIVARLLAQTVRLVVNLEDGQEVVDERDELRREVRAKYGFENMVVGHTASMRR 220 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + +Q+ +VA K + +L+ G +G GK +A I HQ V +NCA L Sbjct: 221 VFDQVRRVA-KWNSTVLILGESGTGKELIASAIHYNSPRAHQ---PLVRLNCAALPETLL 276 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA + R+G A+GG LFLDEIGE+ QA LL+ ++E G Sbjct: 277 ESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLDEIGEISPMFQAKLLRVLQEGELERVG 336 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + V + +++A T RDL V +GKFREDLY R+N+ +P LR+R DI ++ Sbjct: 337 GSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYYRLNVMAIRVPPLRERSADIPELAEFL 396 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +++ A G ++ A R ++ W GN REL + R A + G I+ DV Sbjct: 397 LDKIARQQGRKLKLTDSALRLLMS------HRWPGNVRELENCLERSAIMSEDGTISRDV 450 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 V L ++ P A + +++D E VIA QA + A +L Sbjct: 451 V-----SLTGLDHDATPLAPVPEVDLADDSLD-----DRERVIAALEQAGWVQAKAARLL 500 Query: 496 DVS 498 ++ Sbjct: 501 GMT 503 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 96/378 (25%), Positives = 167/378 (44%), Gaps = 22/378 (5%) Query: 137 IQSSPPRKKEQPRGPGEVT-IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNR 195 +Q +P + I+ + + N + + ++Q + +GI + + Sbjct: 96 MQKGAATFLLKPININHLRAEINKLVEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQK 155 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++ + +++ + A +L+ G +G GK +A+ I +H V +N A + + Sbjct: 156 VLTMVNQISG-TNATVLITGESGTGKELIAKTIHNNSLRKH---NPLVILNSAAIPENIL 211 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KG+FTGA R+G A+ G FLDEIG++ QA LL+ +E+ G Sbjct: 212 ESELFGHEKGSFTGALYQRKGKFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIG 271 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 S+ + D +LIA T ++L L+ EGKFREDLY R+N+ LP LR+R EDI LD Sbjct: 272 SNESIEVDVRLIAATNQELGNLIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAF 331 Query: 376 VERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + + L + + EAR+ L + W GN REL + M T + ++ Sbjct: 332 IREFSRLYSKEILQITPEARKILLRYQ------WPGNIRELKNCIESMVVITTKKYLDVE 385 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + D I + + P + + G + ++E + ++ Sbjct: 386 DLPDHIEK----KSDEMPVSHGLMAGM------TMEDAEIELIKCTLASVGGNREEAARM 435 Query: 495 FDVSRQGKASVNDADRLR 512 + + D RL+ Sbjct: 436 LGIGERTLYRKLDLYRLK 453 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 33/372 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 E +++ + +R EE + +F I ++P +++++ KVA + + Sbjct: 292 DVTERVLMEREQARLQQQNVYLQEELKAAHNF--DEIVGQSPALVSVLQRVSKVAG-TDS 348 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G TG GK +AR + A + + +++NCA L S LFGH KGAFTG Sbjct: 349 TVLITGETGTGKELVARAVH---SASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTG 405 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + G A+GG LFLDE+GEL + QA LL+ ++E+ F G V D ++IA Sbjct: 406 AVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAA 465 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-R 388 T RDL QLV EG FR DL R+N++ LP LR+R DI + + V + A G + R Sbjct: 466 TNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIER 525 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 + + A + + W GN REL + R A + + +D D + R Sbjct: 526 VSGDTLDALVGY------DWPGNIRELENVIERAAILSDGPELVID--PDVLPVTRG--- 574 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 A GA +++ + + V+A + + Sbjct: 575 ------GAAPAGAGGQSLVAVEADHIRSVLAQTGWVIEGPNGAATVLGLH---------P 619 Query: 509 DRLRKYLARFGL 520 + LR + + G+ Sbjct: 620 NTLRSRMKKLGI 631 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 91/319 (28%), Positives = 151/319 (47%), Gaps = 11/319 (3%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 P ++ + + + + + S + + + + I +VA + Sbjct: 118 PFDIDDLAEKVRKALDYSKTTEVLPIKGSKETSSLMVGMSAAMQEVYKLIGRVA-STDVT 176 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK ++R I + G FV VNCA + D S LFG+ KGAFTGA Sbjct: 177 VLITGESGTGKELVSRAIHYNSP---RNKGPFVVVNCAAIPEDLLESELFGYEKGAFTGA 233 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 E + G AN G + LDEIG++ QA +L+ ++E G R + D +++A T Sbjct: 234 DERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTRSIPVDVRVLAAT 293 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-F 389 +DL+ LV G FREDLY R+N+ LP LR+R+EDI D+ ++++A+ T V Sbjct: 294 NKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKKYAAETSKEVTGV 353 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 E A +A+ + GN REL + R + +TLDV+ ++ + + Sbjct: 354 TPEVMAALMAY------DYPGNVRELENIIARAVALCSGKVLTLDVLPPQVVEPKPALRP 407 Query: 450 SRPSALTALLGAEAENIDL 468 + L A A + + + Sbjct: 408 LKEVLLEAERRAFRQAVAV 426 >UniRef50_C6RKL1 ATPase family protein n=2 Tax=Acinetobacter radioresistens RepID=C6RKL1_ACIRA Length = 561 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 116/471 (24%), Positives = 202/471 (42%), Gaps = 54/471 (11%) Query: 72 VVSVEI-ELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITT-GTHVAQICWFLLAEA 129 +V VE+ EL D + YA DF F+ E +H++ G +CW LL A Sbjct: 111 MVQVEVNELQLSHDEHQFYA---DFNWRNSFEAE-----VHLSEFGASEESVCWMLLGYA 162 Query: 130 RYLPARLIQSSPPRKKEQ--PRGPGEVTIIDLDLSRY------------NAIASRFAEER 175 + ++ + ++ +G II L + + ++ Sbjct: 163 CGYTSFVMGQTIIYQETHCVAKGDDCCRIIGKPLKEWENADELIQFMSPDPVSDELI-AL 221 Query: 176 QQTLDFLKSGI-------------ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Q L+ LK I + + ++ + ++K A S+ +LL G TG GK Sbjct: 222 QAELNELKKNIYTDVEADYTMFNSIGESVAYRKVCDLLKKAAG-SKVAVLLQGETGVGKE 280 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I E + Q F+ VNCA + D + LFG KGAFTGA ++R G A+ Sbjct: 281 AFARGIHEGSSRKGQ---PFIAVNCACIPPDLIEAELFGVEKGAFTGATQTRSGKFERAD 337 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +FLDE+ EL + QA LL+ ++E + G + +D +L+A T DL Q V EG+ Sbjct: 338 QGTIFLDEVIELSSRAQAALLRMLQEGEYERVGDHQTRKADVRLVAATNEDLEQAVKEGR 397 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FR DLY R+N++ +P LR+R++DI + + + R ++ G +++ ++ + ++ Sbjct: 398 FRADLYYRLNIFPVIIPPLRERRDDIPLLITHFLSRFENMYGKTLKGLSDKAKNFV---- 453 Query: 403 SPQATWRGNFRELSASVTRMATFATS-GRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL + R I L + +I Q+ P + L A Sbjct: 454 -MTYEWPGNIRELENLLERATLLTDHQEEIKLHHLFPQIK------QDIEPRSEKVDLEA 506 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + + + + ++ + + ++ +SR + Sbjct: 507 VIQEGFCLEDHEKKLIFIAMQKTNNNISEAARVLGISRPALDYRLKKQAIN 557 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 417 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 163/356 (45%), Gaps = 38/356 (10%) Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 R+ + Q+ +VA +R +LL G +G GK +AR I L + Q FV VN Sbjct: 203 IGRSASMQHVFAQVHQVA-PARTTVLLRGESGTGKELIARAIYRLSPRKDQ---PFVSVN 258 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 CA L S LFGH KGAFTGA+ R+G A+GG LFLDEIG++ QA LL+ + Sbjct: 259 CAALTETLLESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVL 318 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +E+ F G V D +LI T R+L Q+V EG+FR DLY RIN+ + LP LR+R+E Sbjct: 319 QEREFERVGGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERRE 378 Query: 367 DIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 DI Y + R G ++ FN EA R W GN REL + R AT A Sbjct: 379 DIPEMAQYFLNRFNRENGRALHFNEEALRVL------SSCYWPGNVRELENCIERTATMA 432 Query: 427 TSGRI-------TLDVVEDEINRLRYNWQESRPSALTALLGAEAENI------------- 466 I +D ++ RP+ + + + A N+ Sbjct: 433 HHDTIGRSSFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGG 492 Query: 467 ------DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ--GKASVNDADRLRKY 514 + + E ++ + + A +L ++ + G A +LR++ Sbjct: 493 LGMHSGEHIPEDERERLLWAMERCGWVQAKAARLLGITARQIGYALRKHGIKLRRF 548 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 174/392 (44%), Gaps = 25/392 (6%) Query: 137 IQSSPPRKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNR 195 I++ +P + + ++ L R I + +P Sbjct: 93 IRAGAYDFVTKPFELDALRLTVERALRHRALREEVRRLRRAVADARGYEQILSGSPVMRS 152 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + + ++++A S IL+ G +G GK +AR + Q + GAFV VNCA + Sbjct: 153 VFDLLDRIA-DSDTSILITGESGTGKELVARAVH---QRSRRSEGAFVAVNCAAVPDALL 208 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH +GAFT A+ +R GL A+GG LFLDEIGEL Q LL+A++E+ P G Sbjct: 209 ESELFGHARGAFTDAKGARSGLFARAHGGTLFLDEIGELPIGLQPKLLRALQERVVRPVG 268 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 +D ++ D +LIA T RDL + E +FREDLY RIN+ LP LR R D+ + Sbjct: 269 ADEELPVDVRLIAATNRDLETAIEERRFREDLYYRINVVHVDLPPLRSRGADVLLLAQHF 328 Query: 376 VERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 +E A++ ++ + A +A+A W GN REL + R A IT+D Sbjct: 329 LEHFATVKARPIQGLSAPAAEKLMAYA------WPGNVRELQNCIERAVALARYDHITVD 382 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + ++I R + + + + + ++ +++ + + Q+ Sbjct: 383 DLPEKIRTYRRSH--------VLVSSDDPTELVPMEEVERRYILRVLEVVGGNKSQAAQI 434 Query: 495 FDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 R +L +Y R G + + Sbjct: 435 LGFDRA-----TLYRKLERYGMRVGRSSDPKP 461 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 27/373 (7%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQ----TLDFLKSGIATRNPHFNRMIEQIEK 202 +P P ++ ++ +SR N AE + +D + ++N +++ EQ++K Sbjct: 104 KPFSPDQIELL---ISRVNERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLKK 160 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 +A +S+A +L+ G +G GK +AR I + F+ VNCA L S LFGH Sbjct: 161 IA-QSKASVLIQGESGTGKELVARAIHYFSP---RCEKPFIRVNCAALAESLLESELFGH 216 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 +GA+TGA R G AN G L LDE+ E+ + QA LL+ +EE+ F G ++ + Sbjct: 217 ERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIKI 276 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D +++A T RDL + + +G FREDL+ R+N+ LP LR+R+EDI + +E+++S Sbjct: 277 DVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSSE 336 Query: 383 TGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 SV+ + A Q W GN REL + R +S + L+ I+ Sbjct: 337 NNSSVKSIEK-----RAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLID- 390 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + + +N + + E + + L + Sbjct: 391 -----IKKSEHTMCNDSVNIKKNGQSIEDAEKELIFTTLEKTGGNKTKAAGLLKI----- 440 Query: 503 ASVNDADRLRKYL 515 + ++L KY+ Sbjct: 441 TTRTLRNKLNKYV 453 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 125/526 (23%), Positives = 210/526 (39%), Gaps = 64/526 (12%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFE------TLKRDIASVSPETEVVSVEIELHNP 82 P + E + D LL R L E +++ TE V L + Sbjct: 376 PQVAAIINELMPFD---LLAVYRIGRLLESAAIDMAVQKQGGVFVAITEKDVVPQTLADQ 432 Query: 83 WDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLP--------A 134 +++ A + + ++ I + L + Y+P A Sbjct: 433 ASWKQALADMETWLVEPAINVGQQFVDIQQRSVVSRFYAEALGLKSSMYVPIFSKGKPIA 492 Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLS----------RYNAIASRFAEERQQTLDFLK- 183 LI +S P+ + I ++L+ R ++ +E+ + +K Sbjct: 493 ALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLEQEKTYLAEEIKT 552 Query: 184 ----SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 I + + I +VA + +L+ G TG GK +AR + L R + Sbjct: 553 SHNFEEIIGTSSSMQTVFNAIGQVA-PTDYTVLIMGETGTGKELIARAVHSLSARRDR-- 609 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 V++NCA L S LFGH +G+FTGA E R G ANGG LFLDEIGEL + Q Sbjct: 610 -PVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQ 668 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 A LL+AI+EK G + + ++IA T R+L+Q VA G+FR DLY R+N++ +P Sbjct: 669 AKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVP 728 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+RQEDI P + +++ + G + A + Q W GN REL + Sbjct: 729 PLRERQEDILPLTMHFLQKISKKLGKPITNIANA-----SLQQLLQYPWPGNIRELEHVL 783 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 R + + S +TL + +A + +E + D ++A Sbjct: 784 ERSSILSQSATLTL-----------AEPLRAATTAFPPFVVQSSEEVKSIDDAMRLAILA 832 Query: 480 ICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 ++ + + +L ++ L + + ++ Sbjct: 833 ALAKSGNRIRGTGGAAELLNIK---------PTTLEARMKKLNISA 869 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 97/377 (25%), Positives = 172/377 (45%), Gaps = 36/377 (9%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG------------IATRNPHFNRMI 197 G + + ++ ++ ++ E + T + I ++ ++ Sbjct: 114 GAYDYILKPFNMIELKSVITKALEASKLTKEVSSQAFPANAFDSRSLHIIGKSAPMQQVY 173 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 + I +VA + A +L+ G +G+GK +AR I + + + F+ +NCA + + S Sbjct: 174 KLIGQVA-PTNATVLIVGESGSGKELVARAIYQYS---LRANKPFIAINCAAIPENLLES 229 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGH +G+FTGA R G +GG +FLDEIGE+ QA +L+ ++E F GS+ Sbjct: 230 ELFGHERGSFTGAMAQRIGKFEQGDGGTVFLDEIGEMPISTQAKILRVLQEGEFSRLGSN 289 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + +D ++IA T +DL VA+ +FR DL+ R+N+ +LP LR+R EDI +D+ + Sbjct: 290 EPIKTDVRIIAATNKDLAAAVAKREFRADLFYRLNVVKISLPPLRERVEDIPDLIDHFLA 349 Query: 378 RHAS-LTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 +H L +++A R+ LA+ W GN REL + R ATS I + Sbjct: 350 KHRRYLPNAPTCISSQAMRSLLAY------HWPGNIRELENVIQRAMVLATSATIQNCHL 403 Query: 437 EDEINRL------RYNWQESRPSALTALLGAEAENIDLFD------RMQLEHV-IAICRQ 483 +EI + + P+ L E DL D + L + + + Sbjct: 404 PEEIQAAEKKKYFKEKSGKGGPAGGLDFLVQEIVGSDLRDHRLETLKSLLHRIYTQVLEE 463 Query: 484 AKSLSAAGRQLFDVSRQ 500 + + +++ Sbjct: 464 CEGDESKAKRILGFHSA 480 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 416 bits (1071), Expect = e-115, Method: Composition-based stats. Identities = 104/373 (27%), Positives = 174/373 (46%), Gaps = 18/373 (4%) Query: 144 KKEQPRGPGE--VTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIE 201 ++P E V I +L +R ++ E ++ D +G+ + P ++ E + Sbjct: 102 FLKKPFDIDEMLVRIDELIKTRQIKADNKNLRELVRSQDQ-NTGLIGQCPAIQKLTETVS 160 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 +A S + +L+ G +G GK LA+ + + V +NC + + S LFG Sbjct: 161 LLA-NSDSTVLITGESGCGKEVLAKALHKSGSRS---GKPLVSINCGAIPEELLESELFG 216 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 HVKGAFTGA +R G ANGG +FLDEIG++ A Q LL+ ++E+ F P GS + + Sbjct: 217 HVKGAFTGAVRARPGRFEIANGGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIH 276 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS 381 D ++IA T RDL +A G+FREDLY R+N+ TLP LR+R +DI D+ + R Sbjct: 277 VDVRVIAATHRDLEAEIAAGRFREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQ 336 Query: 382 LTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 + + E +R L + W GN REL + R+ T G + L+ + Sbjct: 337 QKKADITGVSDEVKRIILNYQ------WPGNVRELQNLIERVTTLKRHGIMELEDLP--- 387 Query: 441 NRLRYNWQESRPSALTALLGAE-AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSR 499 +R+ + + S + AE + D + +++ ++ + ++R Sbjct: 388 SRMISDKERVLQSFRMDVENAECIDLKSTVDEFESHLILSALQRFQWNKNQAANFLAMNR 447 Query: 500 QGKASVNDADRLR 512 L+ Sbjct: 448 TTLVEKIKKKGLQ 460 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 156/352 (44%), Gaps = 28/352 (7%) Query: 172 AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL 231 +E Q L+ GI ++ + +I+ VA +L+ G +G GK +A I +L Sbjct: 320 LKEVQVPLESDFHGIIGQSSLLKDVFRKIQLVAAD-DTSVLILGESGTGKERVAHTIHKL 378 Query: 232 KQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEI 291 + S V VNCA L S LFGH KGAFTGA + R G A+GG +FLDEI Sbjct: 379 SPRK---SKPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEI 435 Query: 292 GELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI 351 GEL + Q LL+ ++EK G + + ++I T R+L + VAEG+FR DLY R+ Sbjct: 436 GELPLEAQVKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRL 495 Query: 352 NLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGN 411 N++ LP LRQR+EDI + +++++ + + A + Q W GN Sbjct: 496 NVFPIELPSLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAA-----SMEELQQYDWPGN 550 Query: 412 FRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDR 471 REL + R + + A + I + Sbjct: 551 IRELEHLIERSVLLSKEEE-------------ITTIIVPTTTPSLAGSNSGEFRIKTMEE 597 Query: 472 MQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 M+ +H+++I + K ++F + + L + + G+ +E Sbjct: 598 MERDHILSILKMCKG------KVFGPGGAAEILNMPSTTLNSKIKKLGIKYE 643 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 416 bits (1070), Expect = e-115, Method: Composition-based stats. Identities = 107/459 (23%), Positives = 184/459 (40%), Gaps = 70/459 (15%) Query: 111 HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTII-DLDLSRYNAIAS 169 H+ + + QI ++ +P +V I + +S + S Sbjct: 73 HMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQDLKS 132 Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 E++ D K GI +P + + I +VA S A +L+ G +G GK +A+ I Sbjct: 133 ANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAA-SDATVLVTGESGTGKELIAKCIY 191 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 + G FV VNCA + + S LFGH KG+FTGA R G + G +FLD Sbjct: 192 QHSLRS---GGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLD 248 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIG++ Q +L+ ++E G + D ++IA T +DL ++V + +FREDLY Sbjct: 249 EIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYY 308 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATW 408 R+N++ +P L++R+ED+ +D+ ++ V R + +A A +A+ W Sbjct: 309 RLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYG------W 362 Query: 409 RGNFRELSASVTRMATFATSGRITLDVVEDEINRLR------------------------ 444 GN REL V R A A I + + D I R Sbjct: 363 PGNVRELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEP 422 Query: 445 -------------------YNWQESRPSALTALLG------AEAENIDLFDRMQLEHVIA 479 + E P +L A+ E + + + ++ + + Sbjct: 423 QASAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIER 482 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + A ++ ++R + L+K L + Sbjct: 483 AIGETGGNQARAAEILGITR---------NTLKKRLDEY 512 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 166/368 (45%), Gaps = 25/368 (6%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 +R+ + + + +M E+I+ VA SRA +L+ G +G GK +A Sbjct: 346 RENIQLKRELKNKYKFGSLIGKAASMEKMFEKIQLVA-DSRASVLITGESGTGKEMIANA 404 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I FV++NCA + + S LFGH KG+FTGA ++G A+ G +F Sbjct: 405 IHYNSSRSE---NPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGKFELADTGTIF 461 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIGE+ + Q+ LL+ ++E+ GS + D ++IA T +L QLVAE KFR DL Sbjct: 462 LDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQLVAEKKFRADL 521 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQA 406 + R+N+ P LR R EDI +++ +E++ S++ + EA R L + Sbjct: 522 FYRLNVVKINTPPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRLLLKY------ 575 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL-----------RYNWQESRPSAL 455 W GN REL + R A + + D ++ + N ES A Sbjct: 576 RWPGNVRELENVIERAVVLAQDEILNEEDFSDILSNMEEMPDNTVEVSHSNHVESVSGAE 635 Query: 456 TALLGA---EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 LG+ + +D D +E V++ A + + +R K + + L Sbjct: 636 PLDLGSGRLTSGQLDGLDGRAMEIVVSEVESRLIQYAMKKFRYTKTRVAKFLGINRNTLD 695 Query: 513 KYLARFGL 520 K + + Sbjct: 696 KKIKELNI 703 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 102/367 (27%), Positives = 163/367 (44%), Gaps = 34/367 (9%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + N+ R E ++ + I R+ ++ I++VA + +L++G TG G Sbjct: 170 VEEENSRLRRMLAEARRPT----TNIIGRSKVIQEVLRAIDQVA-DTNTTVLISGETGTG 224 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I + + + G V+VNCA + S LFGH KGAFTGA R G Sbjct: 225 KELVARAIHDNSR---RAKGPLVQVNCAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEE 281 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A GG +FLDE+GEL QA LL+ ++E+ F P GS R V D ++I + +DL + VA Sbjct: 282 AQGGTIFLDEVGELSPIAQAKLLRVLQEREFQPLGSSRTVKVDVRVITASNKDLEKEVAL 341 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLA 399 G FR DLY R+N++ LP LR+R DI DY V ++A V R T A + Sbjct: 342 GTFRSDLYYRLNVFPIFLPPLRERGPDILLLADYFVLKYARELDKDVKRITTSAIDMLMC 401 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL + R A + + + Q L AL+ Sbjct: 402 Y------HWPGNVRELENCIERAVLLAGGNAVDSWHLPPTLQMKPVGMQNVSRGKLEALV 455 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 A + + + + + + +L +++ ++ + ++G Sbjct: 456 SA----------FERDLITDALKDVRGNQSQAARLLGTTKR---------IVQYKVEKYG 496 Query: 520 LTWEAVQ 526 + + Sbjct: 497 IDPRRFR 503 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 104/388 (26%), Positives = 175/388 (45%), Gaps = 33/388 (8%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAE--ERQQTLDFLKSGIA-TRNPHFNRMIEQIE 201 E+P + + R + E E+Q T D GI +P + I+ Sbjct: 103 LEKPFKLDRLRSVVEKALRRQGLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIK 162 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 +VA S +L+ G +G GK +AR + L + SG FV++NCA L + LFG Sbjct: 163 QVAKSSSTTVLIQGESGTGKELVARAVHRLSARK---SGRFVDINCAALTESLLEAELFG 219 Query: 262 HVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 + KGAFTGA + GL A+ G +FLDEIGE+G QA LL+ ++E+ F G + + Sbjct: 220 YEKGAFTGAATAGKPGLFEIADKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDI 279 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 D ++IA T R+L + +A G FR+DLY R+ + +P LR+R+EDI + Y + ++ Sbjct: 280 KIDVRIIASTNRNLEEEIASGNFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYN 339 Query: 381 SLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 + G ++ + R L + W GN REL V R A ++ Sbjct: 340 NEFGKNICDIPPDTERILLEYG------WPGNIRELKNVVERGVLIANGSALS----PKY 389 Query: 440 INRLRYNWQESRPSALTALLGA----EAENIDL--FDRMQLEHVIAICRQAKSLSAAGRQ 493 + + +ES A + G ++ +D M+ +H+ + ++ + Sbjct: 390 VANISVGKKESESLAGITVDGNTDCVSSDGLDARSLAFMEKQHIENVLKETSWRRTEAAR 449 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++R L + +G+ Sbjct: 450 VLGINR---------TTLYNKIKEYGIA 468 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 157/366 (42%), Gaps = 26/366 (7%) Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ--QTLDFLKSGIATRNPHFNRM 196 R R ++ + L++ ++ E + L I R+ + Sbjct: 119 GGIFRVVTNVRDVTDLNRLQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAV 178 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 +E KVA + +L+ G +G GK A+ I + ++ F+++NC + Sbjct: 179 VELATKVA-DVDSTVLITGESGTGKELFAKLIHRHGRGDNR---PFIKINCGAIPETLLE 234 Query: 257 STLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFG+ GAFTGA RE + GL A+GG LFLDEIGE+ Q LL+ I+EK G Sbjct: 235 SELFGYDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVG 294 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 +Q S + ++IA T RDL +V +G FREDLY R+ + +P LR+R+EDI + + Sbjct: 295 GVKQKSVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHF 354 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +++ G + + + +W GN R+L + R+ IT D+ Sbjct: 355 LDKFNKKFGFNKVILPDVIDRL------TEYSWPGNVRQLENIIERLVVTTPGNEITADM 408 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + ++N A L + + + + RQ + + + Sbjct: 409 LPQQVN------------ARIPLPKTGTKLKEAVAATEKYLLTETFRQYGNWNKVA-DVL 455 Query: 496 DVSRQG 501 + R Sbjct: 456 GIDRTT 461 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 105/376 (27%), Positives = 171/376 (45%), Gaps = 22/376 (5%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVA 204 +P P E+ ++ +A+ AE R + ++P ++ + + KVA Sbjct: 112 LTKPFTPDELRMVCRRALSEDAMRRENAELRHAL---AYGNLVGQSPAMLQLKKTVAKVA 168 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 +L+ G +G GK +AR + + FV VNC L S LFGHV+ Sbjct: 169 GA-DINVLVMGESGTGKELVARALHYQGARAGRA---FVPVNCGALVDSLLESELFGHVR 224 Query: 265 GAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDF 324 GAFTGA +++ GL +A+GG LFLDEIGEL Q LL+A+++ P G D Sbjct: 225 GAFTGAEQAKRGLFLAADGGTLFLDEIGELPLALQPKLLRALQDGEIKPVGGLEPQRVDV 284 Query: 325 QLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG 384 +++A T RDL++ VA+G FREDL+ R+N+ T +P LR+R+ED+ + A Sbjct: 285 RVVAATNRDLQEAVAQGSFREDLFYRLNVITIEVPALRERREDVPVLAQHFAASAARRAR 344 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + + A WLA W GN R+L ++ R A + ++ + + Sbjct: 345 RACPDISPAALEWLA-----AQPWPGNVRQLENAIERAVVLAAGNTLGIEDFQPR-AGVA 398 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 ES P T G A+++ D ++ H++ + + ++R Sbjct: 399 GLAAESAPGRRTGGRGDSADDLLSLDELERLHILRVLEACGGQKTKASAVLGINR----- 453 Query: 505 VNDADRLRKYLARFGL 520 L K L ++GL Sbjct: 454 ----TTLWKKLRQYGL 465 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 176/390 (45%), Gaps = 37/390 (9%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFL----KSGIATRNPHFNRMIEQIEKVAI 205 G E D++ +A + + + D L S I + + + I K+ Sbjct: 96 GAFEYLTKPFDINEIRKLAIKATKSSKPQHDELTQESNSQIVGKAESMQEVFKAIGKI-S 154 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 K+ +L+ G +G GK +A+ + E +Q F+ +N A + + S LFGH KG Sbjct: 155 KTDITVLIRGESGTGKELIAQSVHENSSRSNQ---PFIAINVAAIPHELLESELFGHEKG 211 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA+ R G A GG LFLDEIG++ + Q LL+ + FY G + + SD + Sbjct: 212 SFTGAQSQRIGRFEQALGGTLFLDEIGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVR 271 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T +++ L+ GKFREDLY R+N++ LP LR+R+EDI + Y +++ A Sbjct: 272 IIAATNQNIEGLIKVGKFREDLYHRLNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKS 331 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 ++ + A + W GN R+L + + A S ITLD + DE+ + Sbjct: 332 DLKDIEDP-----AMEVLNEYDWPGNIRQLENTCRYITVMAPSTSITLDDIPDEVKNVDM 386 Query: 446 ---------------NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 NW+ES + + ++L + +L ++ + + +K Sbjct: 387 SLGDPNHFNGLGSNGNWEESLSNHIRSVLQDMNDLTNLSKDLEKILLQEALKASKGRRID 446 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ + R + + + + GL Sbjct: 447 AAKILGIGR---------NTITRKIKDLGL 467 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 36/372 (9%) Query: 155 TIIDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 I+ L + E QQ L + I + R I + +VA S + Sbjct: 185 ETIEKQLQEIERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVA-PSES 243 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +LL G TG GK AR I R ++VNCA L S LFGH KG+FTG Sbjct: 244 TVLLLGETGTGKEVFARAIHAGSPRRDNL---MIKVNCAALPPHLIESELFGHEKGSFTG 300 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + R G A+ LFLDEIGEL + Q+ LL+ ++EK G + + +++A Sbjct: 301 ATQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAA 360 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVR 388 T R+L + V G+FR DLY R++++ +P LR+R+EDI ++ ++R A+ + + Sbjct: 361 TNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPS 420 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 + +A + + W GN REL + R T+ I + Sbjct: 421 ISAKAMEGLMHYE------WPGNVRELEHLMERTLLLTTTPVIAKIDLPG---------- 464 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 +TA ++ I D M+ E+++ + + ++ + + Sbjct: 465 ----VPVTASKDPDSTFILPLDLMEKEYILKVLKLCNG------RIAGPNGAAAKLKLPS 514 Query: 509 DRLRKYLARFGL 520 L + + G+ Sbjct: 515 TTLNSRMKKLGI 526 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 162/383 (42%), Gaps = 26/383 (6%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P E+ + + + R E + + GI + +++ V Sbjct: 104 VTKPFRYQEMLKVAKNALEKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADV 163 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 ++ + +L+ G +G GK +AR I FV +NC L + S LFGH Sbjct: 164 -SRTESTVLITGESGTGKELIARAIHYNGPRSGY---PFVVINCGALPENLQESELFGHA 219 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KG+FTGA + + GL A+ G +FLDEIGE A Q LL+ +++ G ++ + D Sbjct: 220 KGSFTGAVKEKVGLFHHAHKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVD 279 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 ++IA T +L + V +G+FR+DL+ RIN+ LP L++R+EDI ++Y +E + Sbjct: 280 VRIIAATNENLERAVNQGRFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKL 339 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 R F+ A L + W GN REL V R + + I ++ + + Sbjct: 340 KKDKRVFSGSAMAVLLNY------DWPGNIRELQNIVERAVALSKNQVIGVEALP--LPT 391 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + S P + ++ ++ + ++ + Q+ +S Sbjct: 392 GGFVAHNSNPERDVTV---KSSIVETLSEQEKNAIVEAMNKYGGNQTKVSQVLGIS---- 444 Query: 503 ASVNDADRLRKYLARFGLTWEAV 525 L + + ++ + + Sbjct: 445 -----TTTLWRKIKKYKIKPQHE 462 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 111/358 (31%), Positives = 175/358 (48%), Gaps = 31/358 (8%) Query: 159 LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L + A ++ +T F I +++P+ +++ + K K R+ +L+ G +G Sbjct: 350 LQKAESKASFYHQQLQKSETARFTWDHILSKHPYMDKLKKSAAKA-AKGRSTVLIRGESG 408 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGL 277 GK A I G FV VNCA + D S FG+ +GAFTGA++ + G Sbjct: 409 TGKELFAHAIHNSSARS---DGKFVIVNCAAIPEDLLESEFFGYDEGAFTGAKQRGKVGK 465 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 ANGG LFLDEIG++ QA LL+ ++E+ FY G + ++ D ++IA T RDL ++ Sbjct: 466 FDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAATNRDLEKM 525 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 V EG+FREDLY R+N+ + +P LR+R D+E + S+ G S+ + +A+ + Sbjct: 526 VKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITGISPKAKES 585 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 L Q W GN REL + R TFA G I ++ + D + + Sbjct: 586 LL------QYNWPGNVRELKNILERAMTFAEHGNIQVEDLPDYL--------------ID 625 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 L + E L + +LE + QA A +L +SR G ++L+KY Sbjct: 626 QLTIPKKEKNGLAEDAELEAIRKALTQANGNKAQAARLLGISRSGL-----YEKLKKY 678 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 106/397 (26%), Positives = 175/397 (44%), Gaps = 21/397 (5%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATR 189 + +I + EV + L++ +A A EE R + D S Sbjct: 309 VNPIVIDGEITGVVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGH 368 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + + K A K+ +L+ G +G GK +A I + G F+ VNCA Sbjct: 369 SGKILDALATTLK-AAKTDTTVLIRGESGTGKELIAEGIHFSSKNSK---GPFIRVNCAA 424 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFG+ KGAFTGA + + G A G + LDEIGE+ QA +L+ I+EK Sbjct: 425 IPQNLLESELFGYEKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEK 484 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 F G + + + ++IA T R+L ++V +FREDLY R+N+ LP LR+R++DI Sbjct: 485 EFQRIGGEETIKINVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIA 544 Query: 370 PNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 P L++ +++ + +A + L + W GN REL V R+ + Sbjct: 545 PLLEHFIDKIGKRINKRITVVTNDAMESLLEYK------WPGNIRELENLVERIMALNET 598 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVI--AICRQAKS 486 I L + + + + + S + E ++ + E +I ++ S Sbjct: 599 EVIELSDLPAYMRKDINTVKNAIKSKNNNEIDMLIETDEILPLKEYEKIIIEKALKKYGS 658 Query: 487 LSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 +AAG+ L G A + R+Y +TWE Sbjct: 659 YNAAGKAL------GLTHKTVAAKARQYGIEKKVTWE 689 >UniRef50_C7PQF7 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Bacteroidetes RepID=C7PQF7_CHIPD Length = 461 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 106/393 (26%), Positives = 177/393 (45%), Gaps = 40/393 (10%) Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRY-------NAIASRFAEERQQTLDFLKSGIATRNP 191 + P +P EV +I L+++RY + +R +ER+ + GI + Sbjct: 95 TFPYGFLVKPFREREV-LITLEIARYLHANSLEAVMRNRDTKEREIQPMLRRYGIIGESQ 153 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 + ++ + VA S +L+ G +G GK +A I L + S ++VNCA + Sbjct: 154 RLQQTMQHLSVVA-PSDTSVLITGESGTGKEKIADLIHRLS---GRASKPLIKVNCAAMP 209 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 + S LFGH KGAF+GA E G A+GG +FLDEIGE+ D Q LL+ ++EK Sbjct: 210 AELIESLLFGHEKGAFSGALERHIGKFEQASGGSIFLDEIGEMPVDMQVKLLRVLQEKEI 269 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 G+ D ++I+ T R+L + VA+G+FR D Y R+N++ LP LR+R+EDI Sbjct: 270 ERIGAMHSQKVDVRIISATSRNLEKEVADGRFRMDFYYRLNVFPLHLPPLRERREDIPAL 329 Query: 372 LDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 +DY +E H G V + + + +W GN REL + R Sbjct: 330 VDYFLEMHCRNIGRPLVTVTRRVMDSLILY------SWPGNIRELEHLIERSVLLCEGPV 383 Query: 431 ITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 IT + ++I + A+ E + + EH+I + R+ + Sbjct: 384 ITQITLPEKIEYVPV---------------AQEERVKTMQENEREHIIDVLRRCRG---- 424 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 ++F + + L + + G+ + Sbjct: 425 --KIFGKGGAAELLSMNVSTLNYRIRKLGINKD 455 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 97/370 (26%), Positives = 164/370 (44%), Gaps = 12/370 (3%) Query: 145 KEQPRGPGEVTII-DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P P E+ ++ + L R + + + + + I +P + I K Sbjct: 101 LSKPFDPDELKLVVNRALERRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKC 160 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A + + +L+ G +G GK +AR I + Q FV V+C TL + S LFGH Sbjct: 161 A-PTNSTVLITGESGTGKEMIARAIHYNSLRKDQ---PFVTVDCNTLSENLLESELFGHT 216 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KG+FTGA ++ G+ AN G LFLDE G + QA LL+ I+E+ F P G+ ++ Sbjct: 217 KGSFTGAVANKRGMFDVANNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTN 276 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +LI T +DL+ +VAEG FREDLY RIN++ P LR+R++DI + ++ S Sbjct: 277 VRLITATNKDLKAMVAEGTFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSEL 336 Query: 384 GDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 G V + A + + W GN REL ++ R ++ G I + I+ Sbjct: 337 GKPVSEISEGAMSLLMNYG------WPGNVRELENTMQRAVILSSDGIIRQAHLASIIDN 390 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + ++ + + ++ V ++ S + + R Sbjct: 391 SPRLDLDVPRTSDELKRIKKIAREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNF 450 Query: 503 ASVNDADRLR 512 ++ +R Sbjct: 451 QALMKKYNIR 460 >UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammaproteobacteria RepID=A5F6B9_VIBC3 Length = 488 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 103/428 (24%), Positives = 180/428 (42%), Gaps = 43/428 (10%) Query: 126 LAEARYLPARLIQSSPPRKKEQPRGPGEVTI------IDLDLSRYNAIASR--FAEERQQ 177 L +A ++P + P +E P GE+ + L R F Sbjct: 69 LTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLGRKGFQVLATA 128 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + L + ++ + IE+V+ + A +L+ G +G GK +AR I R+ Sbjct: 129 RKNTLFRSLVGQSMGIQEVRHLIEQVST-TEANVLILGESGTGKEVVARNIHYHSGRRN- 186 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 G FV +NC + + S LFGH KGAFTGA +R+G A GG LFLDEIG++ Sbjct: 187 --GPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMS 244 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 Q LL+ ++E+ F G + + ++ ++IA T R+L +++ KFREDLY R+N++ Sbjct: 245 MQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIE 304 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 +P LR R +DI L + R + + F A + + + W GN REL+ Sbjct: 305 MPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMM------EHDWPGNVRELAN 358 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF-------- 469 V RM + + ++ + + + PS +++ E + ++ Sbjct: 359 LVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFE 418 Query: 470 -----------------DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + L+ ++A A Q V+R L Sbjct: 419 EPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRRTTLV 478 Query: 513 KYLARFGL 520 + + ++ + Sbjct: 479 EKMRKYNM 486 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 103/452 (22%), Positives = 175/452 (38%), Gaps = 63/452 (13%) Query: 111 HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASR 170 H+T+ + ++ +P E+ + AI +R Sbjct: 66 HVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISV-----IEKAIRTR 120 Query: 171 FA---EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 E + K GI + + + IEKVA ++ IL+ G TG GK +A Sbjct: 121 IKNHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVA-STKTTILITGETGTGKELIAHA 179 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I + ++++NC + + + LFG+ KGAFTGA ++ G A+ G +F Sbjct: 180 IHRGSPRKDNA---YIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQGTIF 236 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIGE+ D Q LL+ ++++TF G + + D ++IA T RDL + + EG FREDL Sbjct: 237 LDEIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNFREDL 296 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQA 406 Y R+N+ +P LR+R+EDI P Y ++R ++ + + + + Sbjct: 297 YYRLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECF------KKY 350 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL----------------------- 443 W GN REL + R+ I+ + V +EI + Sbjct: 351 NWPGNIRELENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEYLLRE 410 Query: 444 ------RYNWQESRPSALTALLGAEAENIDLFD---------------RMQLEHVIAICR 482 R A E +++D + ++ + + I Sbjct: 411 MENFTERLVLMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIEKILE 470 Query: 483 QAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + + SR+G LRK Sbjct: 471 ECSGNITHAAKRLGFSRKGLQIKMVKYNLRKK 502 >UniRef50_C1ZB08 Sigma-54 interacting regulator n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZB08_PLALI Length = 1098 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 101/315 (32%), Positives = 157/315 (49%), Gaps = 15/315 (4%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 S+ E +F + I + ++E + K A S + +L+ G +G GK LA+ Sbjct: 668 ESQEPESPAPVTEFNRGMIRGSSQALMEVLEVVRK-AAASDSSVLITGESGTGKELLAQA 726 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I R G V V+CA L S LFGHVKG+FTGA + G ANGG LF Sbjct: 727 IHANSPRR---DGPLVIVHCAALSTGLLESELFGHVKGSFTGAYADKPGRFELANGGTLF 783 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIGE+ + Q LL+ ++++TF GS + D +++A T ++L Q + + +FREDL Sbjct: 784 LDEIGEIPLETQVKLLRVLQQRTFERVGSSETLRCDVRVVAATHKNLEQAIRDSRFREDL 843 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQA 406 Y R+N+ LP LR+R++D+ + +++ A+ TG V R + A A LA+ Sbjct: 844 YYRLNVVHIALPALRERKDDLYELFRHFLKQAANKTGKRVFRIDESALAALLAYQ----- 898 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL + R + S +TL + + RL + SA+ L+ Sbjct: 899 -WPGNIRELENVIERAVVLSESNTVTLADLPPALRRLETSAIRRMESAMQPLVVESVSGT 957 Query: 467 DLF----DRMQLEHV 477 ++ +R + HV Sbjct: 958 EVVAASEERGAMHHV 972 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 176/388 (45%), Gaps = 35/388 (9%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFN 194 R+++ + K+ I D+S+ A+ + I R+ Sbjct: 120 RVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEEL------KGRYSFGRIIGRSEKMQ 173 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 + + + +A +S++ +L+ G +G GK +A + E R G FV++NCA L Sbjct: 174 ELFDLLPVIA-QSKSTVLIEGESGTGKELVAHALHENSPRRE---GPFVKLNCAALSEGV 229 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGHVKGAFTGA +SR G A+GG LFLDEIGE+ Q LL+ ++E+ F Sbjct: 230 LESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQVKLLRVLQEEEFERV 289 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G + V D ++IA T RDL+Q + EG FR+DLY R+ + TLP LR+RQ D+ + Sbjct: 290 GGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDLPLLIQS 349 Query: 375 EVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +ER+ + G +++ +EA + L + + GN REL + A RI L Sbjct: 350 FIERYNAELGKNIQGLTSEAMKVLLNY------HYPGNIRELQNIIEHAALLCNDSRIDL 403 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + ++ + S+ L E + ++ + +A+ ++S R+ Sbjct: 404 RHLPGDLLPAQSQ------SSFLELAMMEENPVRYVEKELIR--LAMAESGGNVSEVARK 455 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLT 521 L L + L L Sbjct: 456 L----------SMGRSTLWRRLKEMKLA 473 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 110/423 (26%), Positives = 170/423 (40%), Gaps = 27/423 (6%) Query: 102 QPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + +L H T A + ++ +P EV + Sbjct: 64 RMDGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKA 123 Query: 162 SRYNAIASRFAEERQQTLDFLKS----GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 S + RQQ + I ++ + + I KVA +L+ G + Sbjct: 124 SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAH-DTTVLVTGES 182 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR + + A + VNC + + S LFGHVKGAFTGA +++ GL Sbjct: 183 GTGKELVARSLHFNSP---RAPNALIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGL 239 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+ G LFLDEIGEL A Q LL+ ++++ P G+ + D +++A T R+L Sbjct: 240 CEIAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEAD 299 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 VAEG FREDL+ R+N+ LP LR RQEDI ++ V+ ++ A Sbjct: 300 VAEGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPA---- 355 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 A + TW GN REL + R A IT D + P T Sbjct: 356 -ALSRLLAHTWPGNVRELENLIERAVVLAEGDTITPDDLP--------------PGFGTD 400 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 G + + FD ++ I + A + + +R K L + Sbjct: 401 SAGGPGDALAGFDGYSIKAAQKIFEKRLIEKALAKTGGNRTRTSKLLEISHPSLLAKMKE 460 Query: 518 FGL 520 +G+ Sbjct: 461 YGI 463 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 120/449 (26%), Positives = 181/449 (40%), Gaps = 39/449 (8%) Query: 95 FARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI---QSSPPRKKEQPRGP 151 A +P+ + + + LP +I S+ + RG Sbjct: 38 LATVARERPDAVILDVRL-PDMSGLDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGA 96 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-------------IATRNPHFNRMIE 198 E + +DL + + + R E R + SG I + P + + Sbjct: 97 FEYLLKPIDLHQLDEVLGRAFEMRLAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYK 156 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 I ++A + P+L+ G +G GK +AR + + FV +NCA + S Sbjct: 157 AIGRIAPQ-DVPVLILGESGTGKELVARALYLHSPRSDK---PFVAINCAAIPDALLESE 212 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGH KGAFTGA R G A GG +FLDEIG++ QA +L+ ++++ F G + Sbjct: 213 LFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNE 272 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 V +D ++IA T RDL LV + KFREDL R+N +T TLP LR R DIEP + + V Sbjct: 273 SVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTA 332 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 +VR A A A W GN REL ++ A IT D + Sbjct: 333 ANRKLKKNVRGVDAA-----ALAVLESHRWPGNVRELQNAMRYAVVQAVGEVITPDCLPA 387 Query: 439 EINRLRYNWQESRP--SALTALL--GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + ++ + +T+LL GA + + + A+ Sbjct: 388 SLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADR 447 Query: 495 FDVSRQGKASVNDADRLRKYLARFGLTWE 523 +SR LR L GL E Sbjct: 448 LGISR---------TTLRAKLQTLGLGVE 467 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 108/416 (25%), Positives = 181/416 (43%), Gaps = 65/416 (15%) Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEER------------------QQTLD 180 + P +P ++ ++ LD++RY R + + Q + Sbjct: 95 TQPYGFIVKPFREKDL-LVTLDIARYRYEHHRVLKVKPGIVSQSDDLRLPALPVQQAPVP 153 Query: 181 FLK----------SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 +K GI + R+ E I +VA +L+ G TG GK +A I Sbjct: 154 EVKKEVVPPIPNFEGIIGSSIPMQRVFELIRQVA-PLDTSVLVLGETGTGKEGVANCIHH 212 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 L + + FV+VNCA L S LFGH KGAFTGA E R G A+GG +FLDE Sbjct: 213 LSPRK---AKPFVKVNCAALPTHLIESELFGHEKGAFTGALEKRIGKFERADGGTIFLDE 269 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IG++ AD Q LL+ ++EK G + + + ++IA T R+L + +AEG+FR DLY R Sbjct: 270 IGDMPADLQVKLLRVLQEKEIERIGGNGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYR 329 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWR 409 ++++ L LR+R++DI + + + +AS TG V A R + +A W Sbjct: 330 LHVFPIMLSALRERRDDIPLLIAHFIRLYASATGKGVSDIAPAALRQLMDYA------WP 383 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + R + I ++ + + T ++ E + I Sbjct: 384 GNVRELQNLIERSVLLSRESIIREVILPVSVKK------------ETTVVSTETD-IKTI 430 Query: 470 DRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 ++ EH++ + ++ + +L ++ L + + G+ Sbjct: 431 VELEREHILTVLKKCNHKISGPGGAAELLNLP---------PSTLASKMKKLGIVK 477 >UniRef50_Q485M5 Flagellar regulatory protein A n=19 Tax=Gammaproteobacteria RepID=Q485M5_COLP3 Length = 509 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 94/323 (29%), Positives = 155/323 (47%), Gaps = 18/323 (5%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEE-RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 P + + + ++ + + + L + + ++ IE+VA K+ A Sbjct: 108 PLNYAQLTEQIHHCHQYHNKLPRKGNKLSSSALFRSLVGSSEPMAQVRFLIEQVA-KTPA 166 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G +G GK +AR I L + AFV VNC + + S LFGH KGAFTG Sbjct: 167 SVLVLGESGTGKEVIARNIHNLS---DRAKEAFVPVNCGAIPAELLESELFGHEKGAFTG 223 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A +R+G A GG LFLDEIG++ Q LL+ ++E+TF G + + ++ +++A Sbjct: 224 AISTRKGRFELAEGGTLFLDEIGDMPQPMQVKLLRVLQERTFERVGGSKSIKANVRIVAA 283 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T +DL +++ EG FREDL+ R+N++ P LR+R+EDI L + R +VRF Sbjct: 284 THQDLEEMIKEGSFREDLFYRLNVFPIDTPSLRERKEDIPLLLKELLTRFEHEQNKTVRF 343 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 +A + + + W GN RELS + RM + + + Y +Q Sbjct: 344 TEKAIESLM------EHPWPGNVRELSNLIERMLIMYGDQIVDVTELP-------YKYQH 390 Query: 450 SRPSALTALLGAEAENIDLFDRM 472 A E + D+ + + Sbjct: 391 VDVQAYNPEYPEELQEHDVINEL 413 >UniRef50_C0QPW4 Sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Persephonella marina EX-H1 RepID=C0QPW4_PERMH Length = 443 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 170/374 (45%), Gaps = 35/374 (9%) Query: 153 EVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMIEQIEKVAIKSRAP 210 ++ I D I E+++ L+ + + ++ + I K A + P Sbjct: 96 DIIKILKDFKIGKVIERLTGTEKEKIERGLEENKEMIGTSEAMKKVFQLIRKFA-PTDYP 154 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G TG GK AR I E ++ FV VNCA + D + LFG+ KGAFTGA Sbjct: 155 VLIIGETGTGKELTARAIHE---RSNRADKPFVVVNCAAIPHDLLEAELFGYEKGAFTGA 211 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + R G + ANGG LFLDEIG++ D Q+ +L+ ++E TF GS+ ++D ++IA T Sbjct: 212 DKKRIGKIEYANGGTLFLDEIGDMPYDLQSKILRFLQEYTFERIGSNETKTADVRIIAAT 271 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 DL Q V EGKFR DLY R+++ T LP LR R ED Y VER++ G +++ Sbjct: 272 NVDLDQAVKEGKFRRDLYYRLSVLTIKLPPLRDRGEDPVIMAKYFVERYSKELGKNIKGL 331 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 T A W GN REL ++ + I ++ ++ ++ Sbjct: 332 TAD-----ALEVIRDHPWPGNVRELINTIRKAVVLTDKEFIDVEDLDLKVKCNPQGS--- 383 Query: 451 RPSALTALLGAEAENIDL---FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 G + ++L + ++ + AK + ++ +SR Sbjct: 384 ---------GNGEDILNLKRNIEDLERRLLKEAFILAKGNISKVAKMLGISRP------- 427 Query: 508 ADRLRKYLARFGLT 521 ++ K + + G+ Sbjct: 428 --KVYKLMEKHGIG 439 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 32/410 (7%) Query: 118 VAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIA---SRFAEE 174 F + L I SP + P V I D + N + +R++EE Sbjct: 209 QQGKVAFARYQGENLSELTITGSPI--LDDQNSPVHVVISLHDFTELNQLRLQSARYSEE 266 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 + + + + R++++ +V + + +L+ G +G GK +AR I + Sbjct: 267 LKSLRTKNQKDLIFHDTAMERVVKKALRV-SEVDSTVLITGESGVGKEVIARTIH---RN 322 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGE 293 + G F+E+NC + S LFG+ KGAFTGA + + G++ ANGG L LDE+G+ Sbjct: 323 SPRAEGPFIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGMMELANGGTLLLDEVGD 382 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L + Q LL+A++E+ Y G V + +++A T ++L Q++AE KFREDL+ R+N+ Sbjct: 383 LPLNLQVKLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLFYRLNV 442 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 +P LR+R+ DI P + +E+ + F++E F Q W GN R Sbjct: 443 VPIHIPPLRERKSDILPLSMHFLEKFNNKYNFHRLFSSEV------FKLFEQYPWPGNIR 496 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL+ V R+ + I D + S L + + ++++ Sbjct: 497 ELANLVERLIIMSEQETIYPDQLPPTFFGKPST------SPLQISIDEIIPLKEAREQVE 550 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 E ++ +Q +SL R G A L + G++ E Sbjct: 551 SELIVKALKQYRSLR----------RAGDALGVAHSTLLRKARALGISVE 590 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 37/386 (9%) Query: 144 KKEQPRGPGEVTI---IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 +P EV + L+ R + FAEE ++ + I R+P +++++ Sbjct: 126 FLAKPFKESEVLLRVAKALEKRRLLGEVNLFAEEFRK--RYGLEHIVGRSPAMREVLDRV 183 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 +VA + A +L+ G +G GK +AR + + + FV VNCA + S LF Sbjct: 184 LRVA-PTDATVLVTGESGTGKELVARALHVTSRRSDK---PFVPVNCAAITDTLLESELF 239 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH +GAFTGA +R G+ ANGG LF+DEIGE QA LL+A++E G V Sbjct: 240 GHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPGFQAKLLRALQEGEIRRVGESSPV 299 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 + ++IA T +DLR+ +AE +FREDL+ R+N+ +P LR+R+ED+ + ++R Sbjct: 300 QVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLRIPPLRERREDVPLLAAHFLQRFV 359 Query: 381 SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 TG EA + +A W GN REL + + A T I V+ E Sbjct: 360 QRTGSERVLTPEAVASLVA------HDWPGNVRELENIIEQAAALCTGREIRAADVQIE- 412 Query: 441 NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + GA D + + + A + + D+ R Sbjct: 413 ------------ARAAPAGGAGVTLADAVEDTERRAITAALARCGN---------DLGRV 451 Query: 501 GKASVNDADRLRKYLARFGLTWEAVQ 526 + L + + R G+ Sbjct: 452 ARDLGISGTTLWRKMKRLGIEAREHP 477 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 98/428 (22%), Positives = 176/428 (41%), Gaps = 36/428 (8%) Query: 95 FARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLP----------ARLIQSSPPRK 144 F +KE+ H Q L + ++I + Sbjct: 107 FLNKLGRNAKKEEISFIAVPIKHQNQTYGVLAVDKVVSKMYSITTDVDILKMIATLMASF 166 Query: 145 KEQPRG-PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 + + E+ I + SR + E Q + G+ +++++++ V Sbjct: 167 LHKVQFFTSEMEAIQQEKSRIEEEKLKLIGEVTQKYQY--EGLVGSGRLMRKVLDKVQMV 224 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 S + +L+ G +G GK +A+ I R + FV VNCA + G+ S LFG+ Sbjct: 225 -TASDSAVLIRGESGTGKEVVAKTIHYNSNRRKK---PFVAVNCAAIPGELIESELFGYS 280 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA ++G A+GG +FLDEIG++ + Q+ LL+ +++K G + V D Sbjct: 281 KGAFTGAAGEKKGKFEQADGGTIFLDEIGDMPMEAQSKLLRVLQDKVVEKLGGTKPVQVD 340 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +++A T ++L V G+FR DLY R+N++ LP LR+R+EDI + ++ + Sbjct: 341 VRILAATNKNLEAAVQSGEFRLDLYYRLNVFAIFLPPLRKRKEDIPEIAQHILKNLSKRY 400 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV------- 436 + + EA A + + GN REL + R A A G I + Sbjct: 401 NKNYTISPEAVTALM------NCNYPGNIRELENCLERSAFTAGGGEIKTKHISCMRGEM 454 Query: 437 ------EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 E++++ + + + E V+ +A + A Sbjct: 455 CMSHFMEEQLSGSSTAITPQTGGIPDNDYSEADNELISGNMDERERVVQALEKAGWVQAK 514 Query: 491 GRQLFDVS 498 ++ D++ Sbjct: 515 AARMLDMT 522 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 177/386 (45%), Gaps = 43/386 (11%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 + +SP + KE ++ D +R + + ER + + ++ Sbjct: 226 LSTSPLQNKE--GDVFGAVMVVRDETRLDDL------ERSLNKRQSFHRMIATSSKMQQV 277 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 IE +A + + +L+ G +G GK +A + +++ V+VNCA L Sbjct: 278 FGLIETLA-QVPSTVLILGESGTGKELVAEALHLSGPRKNR---PLVKVNCAALSDTLLE 333 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGHVKG+FTGA + G + A+GG +FLDEIG++ Q LL+ ++EK G Sbjct: 334 SELFGHVKGSFTGAVKDHVGRFQKADGGTIFLDEIGDISPRMQLRLLRVLQEKEVERIGD 393 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 V D +++A T +DL + V G+FR+DLY R+ + T LP LR+R+EDI P +D+ + Sbjct: 394 STPVKVDVRIVAATNQDLEEKVRSGEFRQDLYYRLKVITLALPPLRERKEDIPPMVDHFI 453 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +R+ + G +++ + E RA A+ W GN R+L ++ + T +L Sbjct: 454 QRYNEVLGRNLQGVDQEVMRAMQAY------DWPGNVRQLEHAIEHILIHCTEPLASLAH 507 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 V +EI + A + + + + ++A + A +L Sbjct: 508 VPEEILQG---------------EQAVGKYCADSEEQEQQQILAALDKTDWNKAKAARLL 552 Query: 496 DVSRQGKASVNDADRLRKYLARFGLT 521 + R+ L + + +FGL Sbjct: 553 GIDRK---------TLYRKIEKFGLV 569 >UniRef50_C3ICC4 Sigma54 specific transcriptional regulator, Fis n=4 Tax=Bacillus thuringiensis RepID=C3ICC4_BACTU Length = 693 Score = 413 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 168/354 (47%), Gaps = 25/354 (7%) Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 R + S ++ ++ FL+ I + + KVA KS + +L+ G +G GK Sbjct: 351 KRIKYLESELSKYKKLNDSFLE--IIGCSDVLMETLFIANKVA-KSDSTVLITGESGTGK 407 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I ++ + + F+ VNCA + + S LFGH KGAFTGA R G A Sbjct: 408 ELIAKGIHKVSLRKDK---PFIRVNCAAIPPNLIESELFGHEKGAFTGALHMRRGKFEQA 464 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 N G +FLDEIG+L D Q LL+ ++EK G D+ + + +++A T +L+++V + Sbjct: 465 NNGTIFLDEIGDLKLDLQVKLLRVLQEKEIVRVGGDKTIKLNVRVLAATNGNLQKMVHDR 524 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAF 400 +FREDLY R+N+ +P LR+R+ DI+ ++Y + + + + A + + Sbjct: 525 EFREDLYYRLNVIPIHIPPLRERKADIQSLIEYFRGHFNTSLNKEIHSYTDDFLHALMKY 584 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN REL + R + + + + + D IN S+ +++ Sbjct: 585 ------NWPGNIRELQNVIERAMNLSENDVLEIGDLPDNIN------MNSQQNSIINNQI 632 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 E + + + + + + S +AAG+ L G A ++RKY Sbjct: 633 ENTETVLTMSEYEKKILKHVIQFYPSFNAAGKAL------GLTHKTVAAKVRKY 680 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 102/378 (26%), Positives = 172/378 (45%), Gaps = 35/378 (9%) Query: 160 DLSRYNAIASRF------------AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 D+ A+A R + + + I + E K+A +S Sbjct: 223 DIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMA-KIASQS 281 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 + +L+ G +G GK A I + R+ GAF+ VNCA + + + LFG+ KGAF Sbjct: 282 DSTVLIRGESGTGKELFAHAIHDGSLRRY---GAFIRVNCAAIPENLLEAELFGYEKGAF 338 Query: 268 TGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 TGA + + G ANGG +FLDEIG++ D Q LL+A++E+ GS+R + D ++ Sbjct: 339 TGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVRI 398 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L QL+A+ KFREDLY R+N++ +P LR+ ++D+E +++ ++ G + Sbjct: 399 IASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMGLN 458 Query: 387 V-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN--RL 443 V ++EA + ++ W GN REL + R A IT D + + Sbjct: 459 VNGVSSEANKILNSY------HWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAG 512 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 Q + S + E + + + +Q + +L ++ R G Sbjct: 513 AEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSG-- 570 Query: 504 SVNDADRLRKYLARFGLT 521 L K L + ++ Sbjct: 571 -------LYKKLEEYNIS 581 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 105/378 (27%), Positives = 161/378 (42%), Gaps = 42/378 (11%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSG-----IATRNPHFNRMIEQIEKVAIKSRAPI 211 + L S+ E+ L+ K G I + R+ + + +V+ + + + Sbjct: 130 LSRQLEEIKHYQSQLEEQNAYLLEEAKEGFSYDDIIGSSGPMQRVFQLLSQVSF-TNSTV 188 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 LL G TG GK +AR I + + V VNCA + S LFGH KG+FTGA Sbjct: 189 LLLGETGTGKELVARAIHNSSARKDRL---MVRVNCAAIPAHLIESELFGHEKGSFTGAF 245 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 E R G AN LFLDEIGE+ D QA LL+AI+E+ G + D ++IA T Sbjct: 246 ERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIKVDVRIIAATN 305 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFN 390 R+L + V +G+FR DL+ R++++ TLP LR+R DI V R A G S+ R + Sbjct: 306 RNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAKNNGKSISRIS 365 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 + +A LA+ W GN REL + R A I ++ Sbjct: 366 SNVMKALLAY------PWPGNVRELEHQMERCVLLARDHVIRDVLLPS------------ 407 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVND 507 + A + + E++I + Q QL ++ Sbjct: 408 --PTQSGHAPAAGIYTKTHEENEREYIIRVLNQCNGKIYGPGGAAQLLNLK--------- 456 Query: 508 ADRLRKYLARFGLTWEAV 525 L + + G++ E + Sbjct: 457 VGTLNSKIKKLGISKEQI 474 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 99/419 (23%), Positives = 181/419 (43%), Gaps = 37/419 (8%) Query: 124 FLLAEARYLPA-RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFL 182 + AEA A ++ +P + I + R IA + + +Q+ + Sbjct: 80 IMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVGRAREIAGQVSLLKQELKEHY 139 Query: 183 K--SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 + I + + + I KVA S IL+ G +G GK +AR I + Sbjct: 140 QVEKNIIGNSAAMQSIYKTIGKVA-DSDITILIQGESGTGKEMVARAIHFNS---GRLGK 195 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 FV +NCA + D S LFG +GAFTGA E ++G AN G +FLDEIG++ D QA Sbjct: 196 PFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQANQGTIFLDEIGDMPLDLQA 255 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 +L+ ++E G + ++ + +++A T ++L++ V + +FREDLY R+N+ TL Sbjct: 256 KILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQREFREDLYYRLNVVPITLAP 315 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+R++DI + Y ++R + + EA + +W GN REL ++ Sbjct: 316 LRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALL------SRHSWPGNVRELENTI 369 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEA-------ENID----- 467 R + +T + + ++L A++ A+ E +D Sbjct: 370 KRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIVEAKLRSCLTGIEKLDKSDIH 429 Query: 468 --LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + +++ + I + + + ++R + LRK + + + Sbjct: 430 AKVLQQVERPLIRFILEKTRWNQVKAADILGINR---------NTLRKKIHDLEIELKR 479 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 175/374 (46%), Gaps = 24/374 (6%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFNRMIEQIEKV 203 +P E+ + Y + + A Q+ G+ ++ ++ IEKV Sbjct: 99 LTKPIHMEELFSVLEQALHYKKLNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKV 158 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 + +L+ G +G GK +AR I + + + F VNCA + S LFG+ Sbjct: 159 -KNVDSSVLITGESGTGKELVARAIHFSGKRKQEH---FEVVNCAAIPEHLLESELFGYE 214 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA +EG + AN G +FLDEIG++ QA LL+ +++K GS++ D Sbjct: 215 KGAFTGAATRKEGKFQLANRGTIFLDEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLD 274 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 ++IA T + L++ V EG FREDLY R+++ LP LR+RQED+ L + + Sbjct: 275 VRVIAATNKSLQEQVKEGTFREDLYFRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQEL 334 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 G S++ F ++A+R LA+ + GN RELS V A I L+ + I Sbjct: 335 GKSMKGFRSDAQRELLAYQ------YPGNIRELSNIVESSMVIADGEYIELEDLPMFIRE 388 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + + +L +G + ++ + ++A + + ++ +S +G Sbjct: 389 KGEGF-AKQKGSLDDYIGRPLK------ELEKDFILATLKHNDNHRKKTAEMLGISERGL 441 Query: 503 ASVNDADRLRKYLA 516 D+L++YL Sbjct: 442 -----RDKLKQYLV 450 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 413 bits (1062), Expect = e-114, Method: Composition-based stats. Identities = 88/339 (25%), Positives = 161/339 (47%), Gaps = 12/339 (3%) Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + + ++ + + IEKV ++ + +L+ G TG GK +AR I H+ Sbjct: 183 RERYSFHSLIGKSYLMQNIYDLIEKV-SQTDSTVLITGETGTGKELVARAIHYNS---HR 238 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 V VNCA L S LFGHVKG+FTGA ++G A+ G +FLDEIGEL Sbjct: 239 KDYNLVAVNCAALPETLLESELFGHVKGSFTGAIRDKKGKFELADKGTIFLDEIGELSIP 298 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 Q LL+ ++E+ G ++ + D ++IA T +D+ +L+ +G FR+DL+ R+N+ + Sbjct: 299 TQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQDILELIEKGTFRKDLFYRLNIISIR 358 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELS 416 LP L++R +DI +++ +E+ ++ + A R LA+ +W GN REL Sbjct: 359 LPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPNALRKLLAY------SWPGNIRELE 412 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEH 476 + + S I + + + N +P + + + D ++ E+ Sbjct: 413 GVIEKAVLLEESETIENIELPTDHSAT-TNLCLPKPLNAGPDISSYEDLQKRLDMLEREY 471 Query: 477 VIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 +++ ++ + ++R+ + L+K L Sbjct: 472 FVSVFQKHHGRIGSIAACTGLNRRTILNKMKKFSLKKSL 510 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 168/385 (43%), Gaps = 24/385 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASR---FAEERQQT--LDFLKSGIATR 189 ++ +P EV II R + +E Q+ I Sbjct: 103 NAMKHGAYDYILKPFNLDEVKIIVSRAIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGE 162 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + + + I +VA S+A +LL G +G GK +A+ I R + F++VNC + Sbjct: 163 SSKIQEVYKIIGRVA-NSKATVLLTGESGTGKGMVAKAIHYASDRREK---PFIQVNCGS 218 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + S +FGH KGAFT A + G A GG LFLDEI E+ + Q LL+ ++EK Sbjct: 219 IPEGLLESEIFGHEKGAFTSAFFQKPGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEK 278 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 F G + ++ ++IA T RDL + ++E FR+DLY R+N+ + LP L +R EDI Sbjct: 279 EFERVGGTKTFHTNVRIIAATNRDLNKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIV 338 Query: 370 PNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 DY ++R + G + + F E + + +W GN REL +V + + Sbjct: 339 LLADYFLKRFSVEVGRNGMFFAPEVLDIFRNY------SWPGNIRELENAVEHAIIMSNT 392 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI--DLFDRMQLEHVIAICRQAKS 486 I + + I E + T +LG ++ ++ ++ H+ + Sbjct: 393 RVILPENLPLSIK------VEDVEADGTIILGDDSFKPLREVLLEVEKRHISEAIERTGG 446 Query: 487 LSAAGRQLFDVSRQGKASVNDADRL 511 +L +SR+ + + + Sbjct: 447 NRTQAAKLLQISRRALLYKINENNI 471 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 100/394 (25%), Positives = 170/394 (43%), Gaps = 22/394 (5%) Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ 176 + Q + + RY S P G +I D++ + +Q Sbjct: 74 SIKQARRVIEVKGRYFENSYYPVSSPDG-----GYLGTLLISRDVTERQQLQHENQSLKQ 128 Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 + G + + + + I VA + +L+ G +G GK +A I Sbjct: 129 RMACGSFGGFVSISSSMLPVFQTIGAVAGL-ESTVLITGESGTGKELVAAAIHRNSARNE 187 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 + V VNCA L S LFG+ +GAFTGA + G A+ +FLDE+G+L A Sbjct: 188 RA---MVTVNCAALPEHLVESELFGYQRGAFTGAVGNHRGKFEQADKSTIFLDEVGDLPA 244 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 + QA LL+ ++E+T GS++ + D ++IA T R+L+Q+VA+G FREDLY R+N+ + Sbjct: 245 NAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNLQQMVADGLFREDLYYRLNVISL 304 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELS 416 +P LR+R+EDI P ++ ++R + EA R+ L + GN REL Sbjct: 305 PVPPLRERREDILPMAEFFLKRFSERMERPQLGICEATRSVL-----LSYDYPGNVRELE 359 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG--------AEAENIDL 468 + R I+ + ++ R + L+ G A A + Sbjct: 360 HGIERAVALCPGSCISPADLPEQFVAARSSGGPDWQHPLSVRAGDQYRPDDAAPATLANA 419 Query: 469 FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 + + ++ + A +L ++SR+ Sbjct: 420 REESERRLILDALVRTGGRKAEAAKLLNISRKTL 453 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 107/449 (23%), Positives = 182/449 (40%), Gaps = 45/449 (10%) Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEA-RYLPARLIQ----SSPPRK 144 D + + + I+ G HV + R P L+ Sbjct: 140 EAATDITALLALRIKS-QVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFA 198 Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAE-----ERQQTLDFLKSGIATRNPHFNRMIEQ 199 R E+ I + + A + L++ I ++ R++ + Sbjct: 199 NALVRKQKELQ-IRKAFQQIKELNEELAADCTYLREEIDLNYDVHHIIGQSLPLKRVLAK 257 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 I+++A+ + +L+ G TG GK +AR I Q R + V+VNCA+L + S L Sbjct: 258 IQQIAL-TDTTVLILGETGTGKELVARAIHAASQRRDR---PMVKVNCASLPANLIESEL 313 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFT A+ + G A+ LFLDEIGEL + QA LL+ ++E F GS R Sbjct: 314 FGHEKGAFTSAQVRQIGRFEFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRT 373 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D +++A T RDL + V +G+FR+DL+ R+N++ T+P LR+R EDI ++ V + Sbjct: 374 LKVDVRIVAATNRDLEEEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKF 433 Query: 380 ASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 G S+ R ++ A+ W GN REL + R A + + D Sbjct: 434 GRKLGKSIRRIPAGVMKSLQAY------DWPGNVRELENVIERAAINTVGPSLQ---LLD 484 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + + + P + + H++ + ++ Sbjct: 485 NLKSSLVTEKTAAPRL-------------TLEEAERSHILQVLADTNG------RIEGPK 525 Query: 499 RQGKASVNDADRLRKYLARFGLTWEAVQD 527 + LR + + G+ + D Sbjct: 526 GAALILGINHSTLRARMRKLGIHIRRISD 554 >UniRef50_C7LX45 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX45_DESBD Length = 529 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 167/352 (47%), Gaps = 18/352 (5%) Query: 155 TIIDLDLSRYNAIASRFAEERQQT----LDFLKSG----IATRNPHFNRMIEQIEKVAIK 206 T+I LS + R A +Q+ + I ++ + + + KVAI Sbjct: 159 TLISQFLSLNEKVKKREAALKQENTSLKYQIARENHGPYIVGKSQAMLEVEQYVAKVAI- 217 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 ++A +LL G +G GK+ + R I EL + + F++VNCA + + + LFG+ KGA Sbjct: 218 TKATVLLLGESGTGKTLIGRIIHELS---DRKTHPFIKVNCAAIPENLLEAELFGYEKGA 274 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA ++ G A+ G +FLDEIGEL Q+ LL+ ++E+ F GS++ D ++ Sbjct: 275 FTGANSTKPGRFEDAHLGTIFLDEIGELPLTLQSKLLRVLQEREFERIGSNKTRKVDVRI 334 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 I+ T R+L LV G FREDLY R+N++ +P +R+R+EDI L++ + G S Sbjct: 335 ISATNRELEALVGHGLFREDLYYRLNVFPVHVPAVRERKEDIPRLLNHFQKEMEREYGRS 394 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + T A LA+ W GN REL V R+ + ++V + + Sbjct: 395 LTLTTGALDLLLAY------DWPGNVRELENLVERLVILTDDKPVEAELVRGFLTPETHR 448 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 +R + + + + V+A ++ + + +++ Sbjct: 449 PGPARHAPEPPAHPEQEDYCQPLKETERREVLAALKRNAWIQYKAARELNLT 500 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 164/376 (43%), Gaps = 43/376 (11%) Query: 159 LDLSRYNAIASRF------AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 L + + R E+ +D I R+ +++Q+E VA +S + +L Sbjct: 348 LAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA-QSDSTVL 406 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 + G TG GK +AR I L ++ V++NCA + S LFGH +GAFTGA Sbjct: 407 ILGETGTGKELIARAIHNLSGRNNRR---MVKMNCAAMPAGLLESDLFGHERGAFTGASA 463 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 R G A+ LFLDE+G++ + Q LL+ ++E+ F GS++ + +D +LIA T R Sbjct: 464 QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 523 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNT 391 DL+++VA+ +FR DLY R+N++ LP LR+R EDI + A G ++ Sbjct: 524 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPA 583 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 E R W GN REL + R + L + + E+ Sbjct: 584 ETLRTLSNME------WPGNVRELENVIERAVLLTRGNVLQL-----SLPDIVLPEPETP 632 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDA 508 P+A L E E + ++ + ++ + A Q + R Sbjct: 633 PAATVVALEGEDE---------YQLIVRVLKETNGVVAGPKGAAQRLGLKR--------- 674 Query: 509 DRLRKYLARFGLTWEA 524 L + R G+ A Sbjct: 675 TTLLSRMKRLGIDKSA 690 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 183/387 (47%), Gaps = 31/387 (8%) Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 + P KE+ G E + L + N + EE + L I + F + E Sbjct: 109 TKPFPKEKILGVLENVLERELLRKEN---QQLKEELGKV--TLTDAIVFASDRFREVYEL 163 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 +VA S A IL+ G +G GK +A I + R + + +NCA L S L Sbjct: 164 TLEVAA-SEANILILGESGTGKELIAGAIHRHSKRRGRRI---LSINCAALSDTLLESQL 219 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGHV+GAFTGA +++GLL A+ G LF+DEIG++ QA LL+ I+E F P G+ R Sbjct: 220 FGHVRGAFTGATTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRA 279 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 D + +A T ++L + VAEG+FREDLY R+N+ + LP LR+R+EDIEP + + ++ Sbjct: 280 KKVDIRFVAATNKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKY 339 Query: 380 ASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 V RF EA L + +W GN REL V R A SG +T D + Sbjct: 340 NQRMNKEVDRFTREALDLMLGY------SWPGNIRELENVVERAVILARSGVVTTDHLPM 393 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + SAL++ + + ++ EH+ + + ++ +S Sbjct: 394 WKKNVASTAATGPASALSSH------QLVSLENVEREHIRQTLARTGFHKSRTAEILGIS 447 Query: 499 RQGKASVNDADRLRKYLARFGLTWEAV 525 R+ L + +A FGL E Sbjct: 448 RK---------TLDRKIAEFGLKPEGE 465 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 110/387 (28%), Positives = 173/387 (44%), Gaps = 25/387 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAI--ASRFAEERQQTLDFLKSGIATRNPH 192 + ++ +P E+ I+ ++ + + +R E Q G+ R P Sbjct: 101 QAMKHGAFDYVTKPFNMDELRILLDRVTGHLKLTTENRMLRE-QVKARHGFGGMVGRAPE 159 Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 R+ I K A + P+L+ G +G GK +AR + + + F+ V+C +L Sbjct: 160 MERLYRIITKAANSTH-PVLIMGESGTGKEVVARAVHYTGCYKDK---PFIPVDCGSLVP 215 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFG+VKGAFTGA+ S++GLL A+GG +FLDEIGEL D Q+ LL+A++EK Sbjct: 216 TLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEIGELPIDLQSKLLRALQEKEIR 275 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 P G R V + +++A T RDL Q V +G FR DLY R+N+ T +P LR R++DI + Sbjct: 276 PVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRIPPLRDRKQDIPLLV 335 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + +ER TG + EA + L + W GN REL + R + I Sbjct: 336 GHFLERTERATGFQRNISDEALKLMLTY------DWPGNVRELEHCLDRACALTSGPTIN 389 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 + I Q A A I M+ + ++ + Sbjct: 390 TLDLPTTIQNWHVQTQTVLAPQAPA---APTNGIVPIAEMEKQAILEAIERLHGDKLEAA 446 Query: 493 QLFDVSRQGKASVNDADRLRKYLARFG 519 +L + + L + L +G Sbjct: 447 RLLGIGK---------TTLYRKLKEYG 464 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 159/358 (44%), Gaps = 26/358 (7%) Query: 169 SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRI 228 R + ++ G+ + ++ IE VA S +L+ G +G GK +AR + Sbjct: 136 RRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAY-SATTVLVTGESGTGKELVARAL 194 Query: 229 LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFL 288 R Q FV +NC L S LFGHVKGAFTGA+ ++GL +A+GG +FL Sbjct: 195 HARSPRRAQ---PFVALNCGALTETLLESELFGHVKGAFTGAQRDQKGLFDAADGGTIFL 251 Query: 289 DEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLY 348 DEIG++ Q LL+ ++E GS V D ++IA T RDL +LV GKFREDL+ Sbjct: 252 DEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPRLVKAGKFREDLF 311 Query: 349 ARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQAT 407 R+N+ LP LR R +D+ + + R+A G VR +A + Sbjct: 312 YRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIELLCGY------R 365 Query: 408 WRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL-------G 460 W GN REL ++ R +T + + P+ + Sbjct: 366 WPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGGDEAVWLTMSYAT 425 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 A+ +++ F++ +E ++ R + +A + + R V LRKY Sbjct: 426 AKEQSLRRFEKGYVETLM---RHCDNNISAAARKAGMDRSNFKRV-----LRKYRTDV 475 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 178/396 (44%), Gaps = 29/396 (7%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNR 195 ++ +P E+++ + + + R + I + Sbjct: 94 LKLGAYDFVGKPLDFDELSVAVKNALETTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTE 153 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++ + K+A IL+ G +G GK +A+ I + + FV +NC+ + Sbjct: 154 LMVFVAKIATSEATTILVQGESGTGKDLVAKAIHYQSR---RQEKPFVAINCSAIPETLM 210 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 + LFGH KGAFT A+ ++GL +A+GG LFLDEIGEL QA LL+ +E++ G Sbjct: 211 EAELFGHEKGAFTDAKAMKKGLFEAADGGTLFLDEIGELSPLLQAKLLRVLEDQVIRRVG 270 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 R + D ++IA + RDL ++V +G FR+DLY R+ + + LP LR R+EDI P +++ Sbjct: 271 GVRDMQVDVRVIAASNRDLEKMVRDGTFRQDLYYRLAIISVFLPPLRDRKEDILPLVEFF 330 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +ER+ S+R T+ R L + W GN REL ++ R + + D Sbjct: 331 IERYNRKFKKSIRGVTDNTRRLL-----MKHDWPGNVRELKNAIERAMILDEAENLRPDY 385 Query: 436 VEDEINRLRYNW----QESRPSALTALLGAEA-------ENIDLFDRMQLEHVIAICRQA 484 + + + + + S P+ + L + E + ++ V ++A Sbjct: 386 LPFAVAQQQAMYTAFESASPPAPIQQLPNGRSLPRLVIPEGGTSLEEVERAFVEMAMKEA 445 Query: 485 KSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 +L D+SR D LR L +FGL Sbjct: 446 NGNQTHAARLLDISR---------DALRYKLKKFGL 472 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 105/402 (26%), Positives = 181/402 (45%), Gaps = 44/402 (10%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS---------- 184 L+ + P E+ + V I D+S + + + +LK Sbjct: 205 ELLMTGAPVFNEE-KEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAF 263 Query: 185 -GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 I T+N + ++ VA + + +L+ G +G GK +A+ I +A H+ F+ Sbjct: 264 KKIITKNNDMQKKLDTAYHVA-RVDSTVLILGESGVGKELIAQLIH---RASHRSEKPFI 319 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGMLFLDEIGELGADEQAML 302 ++NC + + S FG+ G+FTGA +E ++GL A+GG LFLDE+GEL + Q + Sbjct: 320 KINCGAIPANLLESEFFGYEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKV 379 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+AI+EK G + + D ++IA T RDL ++ E FREDLY R+N+ T+P LR Sbjct: 380 LRAIQEKEILRVGGKKTIKLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLR 439 Query: 363 QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 QR+ED+ P + R+ + G + E L + W GN REL ++ R+ Sbjct: 440 QRKEDVIPIALELLARYNTAYGYQKWIHPEVMDCLLNY------DWPGNIRELENTIERL 493 Query: 423 ATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICR 482 + IT D + ++Y P+ LT+L ++ + + R Sbjct: 494 VVTSMDDCITKDA----MAEIKYIDVHPAPNGLTSL-------KAFLEKEENRLLEEAYR 542 Query: 483 QAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 S A + +S+ + K + ++G+ + Sbjct: 543 LMGSTRKAAA-VLGISQS---------SMVKKMKKYGIEIQN 574 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 167/373 (44%), Gaps = 30/373 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 E + +L + N +E + + + GI ++ + +++A K+ + Sbjct: 245 DVTEARNLSFELEKTNEKLKYLQDEVKNLSNGVFEGILGKSDKIEKAKAIAKQIA-KTSS 303 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 I + G +G GK +R I E + G+FV VNC+ + + S FG+ GAFTG Sbjct: 304 SIFIWGESGTGKEVFSRAIHEQSGRK----GSFVPVNCSAIPAELFESEFFGYESGAFTG 359 Query: 270 ARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 A + + G+ A G +FLDEI +L + QA LL+ ++EK G ++ + + ++I+ Sbjct: 360 ANKKGKSGIFELAKDGTVFLDEIADLPLNMQAKLLRVLQEKEVRRVGGEKTIKINPRIIS 419 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-V 387 T +DL ++V E KFREDLY R+N+ +P LR+R+EDI L Y ++ G + Sbjct: 420 ATNKDLEKMVKEEKFREDLYYRLNVVEIKIPPLRERKEDIGILLHYFLDEMCRENGKPRM 479 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 + EA + W+GN REL +V M + S I D + I N Sbjct: 480 SLSKEA------YKILENYRWKGNIRELKNTVENMVVLSDSSIIEKDAIPSYIVESAKNS 533 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 T + ++++++++ +K A ++ ++ R Sbjct: 534 --------TDDEDYPLDLTSAIEKLEIKNITKALEMSKGNKAKAAKILNIPR-------- 577 Query: 508 ADRLRKYLARFGL 520 L L +G+ Sbjct: 578 -TTLYYKLDLYGI 589 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 161/368 (43%), Gaps = 17/368 (4%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG---IATRNPHFNRMIEQIEKV 203 +P P + I + ++ RQQ I +P +++ + +V Sbjct: 102 KPFSPDTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTRV 161 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A +S A + +NG +G GK +A+ I F++VNCA + S FGH Sbjct: 162 A-QSNASVFINGESGTGKEVIAQAIHANSARSQF---PFIKVNCAAIPETLIESEFFGHE 217 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA R G A+ G L LDEI E+ QA LL+AI+E+ F G + + D Sbjct: 218 KGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKVD 277 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +LI+ + RD++ +A REDLY R+N+ LP LR R EDI P Y +E+ Sbjct: 278 VRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCMEN 337 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 + F+ E+ + + +A W GN REL+ V R T+ IT + + E N Sbjct: 338 HKQAKTFSKESIKKLVGYA------WPGNVRELANIVERAVVMTTNSEITPEHLYIENNH 391 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS-RQG 501 + + + L ++ +I + + ++ +S R Sbjct: 392 PNLPLRTASTLSQNTLTSLPVGM--TLQELEKRLIIETLQAQHNNRTKTAEVLGISVRTL 449 Query: 502 KASVNDAD 509 + +N+ + Sbjct: 450 RNKLNEYN 457 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 163/386 (42%), Gaps = 22/386 (5%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 + I L + A+ ++ + + + G + ++ QI +VA S Sbjct: 157 EDEMRLLTIVSTLLGHAALETQGRMDEETSSPLRPRGFVGNSEGMQKVYAQIAQVA-PSV 215 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 + L G +G GK AR I + F+ +NCA L + S LFGH +GAFT Sbjct: 216 TTVFLQGESGTGKELAARAIH---SGSARAGKPFISLNCAALPENLIESELFGHERGAFT 272 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA +R+G A+GG LFLDE+GEL QA LL+ ++E+ F G D + I Sbjct: 273 GASATRKGRFELAHGGTLFLDEVGELSLMTQAKLLRVLQERAFERLGGMETHYVDVRFIT 332 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SV 387 T R+L +VA+ FR DL+ R+N++ LP LR R EDI P ++ + + A G +V Sbjct: 333 ATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRGRPEDILPLANHFIRKFAQANGRENV 392 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA-TFATSGRITLDVVEDEINRLRYN 446 R + +A W GN REL + R G + + ++ Sbjct: 393 RLSLSVMDMLQRYA------WPGNIRELENVMERAVLLLGREGLVLPQHLPPALHGAHC- 445 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 S SA A G D D ++ ++ ++ ++ + A Sbjct: 446 AGISGESACAARPGFSGSLQDQLDELERASIVEALEFSQGQMGKAAASLGLTERIMAL-- 503 Query: 507 DADRLRKYLARFGLTWEAVQDQHSSS 532 + ++ + ++ + +H+ S Sbjct: 504 -------RMKKYEINYKEFRPRHNRS 522 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 108/366 (29%), Positives = 169/366 (46%), Gaps = 12/366 (3%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHFNR 195 I+ E+P P ++ + ++ + R+ + F I T++P Sbjct: 102 IKQGAFDYLEKPLDPKTFDVVIQRALEFARLSHENVQLREHFAELFSFQNIVTQSPAMRT 161 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 ++E +VA R + L G +G GK LAR I FV VNCA + Sbjct: 162 VLELASRVAASPRTTVSLTGESGTGKEVLARAIHFASGCLPSN---FVAVNCAAIPEALL 218 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGHV+GAFTGA REG A GG + LDEIG++ QA LL+ +EE+TF G Sbjct: 219 ESELFGHVRGAFTGAERDREGKFSLARGGTVLLDEIGDMPLPLQAKLLRVLEERTFEKVG 278 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 +R DF++I T RDL QLV +G+FREDLY RIN+ +P LR+R EDI +D+ Sbjct: 279 DNRPQPVDFRVIVATYRDLAQLVRKGRFREDLYHRINVVPIAIPPLRERLEDIPLLVDFF 338 Query: 376 VERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++ G ++ + +A +A +W GN REL + A + I + Sbjct: 339 LKLFRQHQGKALPGVSKKAMDLLIA------HSWPGNVRELRNVLEYAAIMVSDELIRPE 392 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + + + S + + AE++ L D + + + ++ + L Sbjct: 393 HLRLSSSSPSASALPSSSGTVEFHISLPAEDVSL-DAVVSRVLESALQRCHGNKSRAAAL 451 Query: 495 FDVSRQ 500 V+R+ Sbjct: 452 LKVNRK 457 >UniRef50_C1AEP0 Fis family transcriptional regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1AEP0_GEMAT Length = 474 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 122/416 (29%), Positives = 176/416 (42%), Gaps = 33/416 (7%) Query: 120 QICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTL 179 I WF AR+ + P + P GE+ + L + A+ + A L Sbjct: 72 PIAWFDALPARHDRLPALPHGPIGRLTLPLKAGELQRL-LKAAEEPALPQQTAVSPGSHL 130 Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 +F G+ P +++ +I +VA + A +L+ G +G GK +AR + R Q Sbjct: 131 EF--HGMFASTPGMHQVFHRIRRVAA-TDASVLITGESGTGKELVARALHNDSPRRDQ-- 185 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 FV +NC+ L + S LFGH +GAFTGA R GL +A+GG LFLDEIG+LG Q Sbjct: 186 -PFVALNCSALPSELVESELFGHTRGAFTGALRDRAGLFEAAHGGTLFLDEIGDLGLSAQ 244 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 A +L+A+E G + S D ++IA T R+L QLVA G FREDL R+++ LP Sbjct: 245 AKMLRALESHEVMRVGGSKITSVDVRVIAATHRNLPQLVAWGDFREDLLYRLHVVGIELP 304 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR R DI + V A G VR A +A LA TW GN REL + Sbjct: 305 ALRDRPADIPLLAERFVRLFAERHGLPVRLPDAATQALLA-----AHTWSGNIRELRNCI 359 Query: 420 TRMATFATSGRITLDVVEDEI------------------NRLRYNWQESRPSALTALLGA 461 + IT + + + + P L+ A Sbjct: 360 EGAVILSDGPAITPADLPAGVTVSGGFSMDAADSETQSEPVVTSGARIVSPLEELPLVEA 419 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 +D FDR L + + A + + RQ + +R R Sbjct: 420 REVALDEFDRAYL---TSALSRHGGNIAQTARAIGLHRQSLQKLLTRRHMRTPGLR 472 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 172/368 (46%), Gaps = 24/368 (6%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 L + A +RQ + I + N++ + IEK A ++A I++ G +G G Sbjct: 117 LEHGSLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEK-AAPTKANIMITGESGTG 175 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K LA + + R + F+ +NCA + S LFG+ KGAFTGA ++ GL+ Sbjct: 176 KGLLAEAVHQNSPRRDK---PFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITM 232 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG LFLDEIG++ Q+ +LK +E P G + + D ++I+ T +DL + E Sbjct: 233 ADGGTLFLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIRE 292 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLA 399 FREDLY R+N+ +P LR+R+EDI ++ ++ V+ F+ A +A +A Sbjct: 293 KTFREDLYYRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMA 352 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL V R FA +IT + +I R + P T + Sbjct: 353 Y------PWPGNVRELKNVVERAVIFAGGEQITPAELPAKIRR---GDATAGPGGNTEVS 403 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 G + ++D + + +I + + + D L + +++ G Sbjct: 404 GLQPLKAMVYD-YEKDIIINALNRFDGSKEMVAKTLGI---------DLTTLYRKMSKLG 453 Query: 520 LTWEAVQD 527 + EA++ Sbjct: 454 IDEEALKK 461 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 162/373 (43%), Gaps = 38/373 (10%) Query: 153 EVTIIDLDLSRYNAIASRFAEER----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 V I +L ++ A+ + + + D I + + QI +A S Sbjct: 103 PVDIDNLHIAISKALHQKISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIA-PSD 161 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 A ILL+G +G GK +A I + + GA + +NCA L + S LFGH GAFT Sbjct: 162 ATILLSGESGTGKELVATAIHRHSKRKE---GALIRINCAALHENLLESELFGHELGAFT 218 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA + ++GL A+ G LFLDEIG++ Q +L+ ++E F G + + + ++IA Sbjct: 219 GAAKQKKGLFERADKGTLFLDEIGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIA 278 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR 388 + R+L +L+ EG FR+DL+ R+++ LP LR+R DI ++ + + ++ Sbjct: 279 ASHRNLEKLIEEGTFRQDLFFRLSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIK 338 Query: 389 -FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 F+ EA + + W GN REL S+ R +IT + + R R Sbjct: 339 GFSQEALDLLMEY------PWPGNIRELENSIERGVILCLGEQITAHELPPQFFRNRSP- 391 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 E + D ++ + ++ +A + ++R Sbjct: 392 -------------GELSSRDTLRDVEKRAIQQALARSGFNKSATAKQLGIAR-------- 430 Query: 508 ADRLRKYLARFGL 520 L + +GL Sbjct: 431 -QTLLNKIRDYGL 442 >UniRef50_C1A7J8 Putative NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7J8_GEMAT Length = 457 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 185/385 (48%), Gaps = 32/385 (8%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS--GIATRNPHFNRMIEQIEK 202 E+P V + L R + EE + + ++S I R+ ++E+IE+ Sbjct: 101 LEKPLDTDRVLV----LLRNAFTNRQLTEENDRLRETIESRYEIVGRSFGIRSLLERIER 156 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 V + A +L+ G G GK +AR I Q + F+EVNCA + + S LFGH Sbjct: 157 V-TGTPARVLITGENGTGKELVARAIHRGSQ---RARKPFIEVNCAAIPSELIESELFGH 212 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 +KG+FTGA R G A+GG LFLDEIG++ QA +L+ +++ G + V Sbjct: 213 MKGSFTGAIADRAGKFEQAHGGTLFLDEIGDMSQSAQAKVLRVLQDGFVTRIGGSKPVQV 272 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D +++A T +DL + +A G+FREDLY R+N+ T+P LR+R+EDI + + +++ A Sbjct: 273 DVRVLAATNKDLEEEIAAGRFREDLYYRLNVVPITVPALRERREDIPLLVRHFLQQFAER 332 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 G R + EA + + W GN REL ++ R+ A++ I++ ++ Sbjct: 333 DGLPARSISDEALQRL------SELDWPGNVRELRNTMERLVILASAASISVADIDRLAG 386 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 R + + PS + +LL + + ++A R + + D+ R Sbjct: 387 R-----RTAEPSGIGSLLDCNTFE-EFKQAAERAFLLAKLRAFDWNVSETARALDMPRSN 440 Query: 502 KASVNDADRLRKYLARFGLTWEAVQ 526 L K + R+ LT E++ Sbjct: 441 ---------LYKKIERYALTRESLP 456 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 176/395 (44%), Gaps = 34/395 (8%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATR 189 +Y+P I S +K + G + L N E + +G+ Sbjct: 59 QYMPVITIGKSDIKKAIKSMKLGATDFLQKPLR--NESVKEIFENFKDKPKVEINGLIGI 116 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + + I K A+ + + +L+ G +G GK +AR I L + + F+ +NC Sbjct: 117 SRIMEDVYCGIRKAAL-TDSNVLITGESGTGKELVARAIHNLSERKE---NPFIVINCTA 172 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + S LFG KGAFTGA +++GL+ A+ G LF DEIG++ Q +L+ I+E Sbjct: 173 IPDTLLESELFGFEKGAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILRVIQEG 232 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 F G + V D + IA T +DL + EG FREDL+ R+N+ +P LR R+EDI Sbjct: 233 EFIRIGGNHPVKVDVRFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSRKEDIP 292 Query: 370 PNLDYEVERHASLTGD--SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFAT 427 + +++H++ D EA A +++ ++ GN REL + R F Sbjct: 293 SLTQFFIKKHSAKRKDINIKGITEEALDALMSY------SFPGNVRELENIIERAIAFTN 346 Query: 428 SGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 S IT+ + + + +++ + + A+ D + E + + ++++ Sbjct: 347 SVEITIKDLPAYLLKTQHSKKTPHGNLREAV-----------DNFEKELIWSALQKSRGN 395 Query: 488 SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + +L + R +L++ L +F + Sbjct: 396 ISKAAELLGIHR---------QQLQRKLKQFKIAT 421 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 114/400 (28%), Positives = 168/400 (42%), Gaps = 36/400 (9%) Query: 136 LIQSSPPRKKEQPRGPGEVTIIDLDLSRYN-----AIASRFAEERQQTLDFLKS-----G 185 L+ KE R PG + + S+ A F E QQ +S Sbjct: 84 LVPKESVSGKESWRLPGALGRLRYPFSQTELTSALQNAELFREGHQQKGQDRRSVELFRS 143 Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 + + + IE+VA S A +L+ G +G GK +AR + R FV V Sbjct: 144 LVGNSRATRTVRHLIEQVA-DSNATVLILGESGTGKEVVARNLHYHSSRR---GNPFVPV 199 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NC + G+ S LFGH KGAFTGA +R+G A G LFLDEIG++ Q LL+ Sbjct: 200 NCGAIPGELLESELFGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRV 259 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 ++E+TF GS++ + D ++IA T R+L + + EG FREDLY R+N++ +P LR+R Sbjct: 260 LQERTFERVGSNKLIHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERV 319 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI ++ + R G SVR A A Q W GN REL+ V R+ Sbjct: 320 EDIPLLINEIITRIEHEKGASVRLTPAAVMALC------QYPWPGNVRELANLVERLTIL 373 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSAL-----------TALLGAEAENIDLFDRMQL 474 G + + ++ S P L + ++ Sbjct: 374 HPYGVVDHYDLPEKYRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIER 433 Query: 475 EHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + +A + A R ++LRKY Sbjct: 434 SLIKQALEEADGVVAQAA-----HRLRMRRTTLVEKLRKY 468 >UniRef50_A4VMJ3 Transcriptional regulator FleQ n=69 Tax=Gammaproteobacteria RepID=A4VMJ3_PSEU5 Length = 504 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 112/401 (27%), Positives = 184/401 (45%), Gaps = 24/401 (5%) Query: 133 PARLIQSSPPRKKEQPRGPGEVTIIDLDLSR---YNAIASRFAEERQQTLDFLKSGIATR 189 PA + R P + L R Y + RQ+ + +S + Sbjct: 106 PADWPEEIRRRVLTSLEMPPSYNKLLDSLHRAQIYREMYESKTRGRQREPNLFRS-LVGT 164 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 + + + +E+VA + A +L+ G +G GK +AR + + R G FV VNC Sbjct: 165 SRAVQHVRQMMEQVA-DTEASVLILGESGTGKEVVARNLHYHSKRRQ---GPFVPVNCGA 220 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFGH KGAFTGA +R G A GG LFLDEIG++ Q LL+ ++E+ Sbjct: 221 IPAELLESELFGHEKGAFTGAITARAGRFELAEGGTLFLDEIGDMPLPMQVKLLRVLQER 280 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 TF GS+R ++D ++IA T +DL +++ EG FREDLY R+N++ + LR+R EDI Sbjct: 281 TFERVGSNRTQNADVRIIAATHKDLEKMIEEGTFREDLYYRLNVFPIEMAPLRERVEDIP 340 Query: 370 PNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 ++ + R S+RFN+ A + + W GN REL+ V RMA G Sbjct: 341 LLMNELISRMEHEKRGSIRFNSAAIMSLC------RHDWPGNVRELANLVERMAIMHPYG 394 Query: 430 RITLDVVEDEINRL----------RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 I + + + + ++ E R + ++ EA+ + + + L+ + Sbjct: 395 VIGVMELPKKFRHVDDDDEQYATSLHDEMEERAAISAPMVVPEAQAMLPVEGLDLKEYLG 454 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 Q A V+R + L + + ++G+ Sbjct: 455 NLEQGLIHQALEDAGGVVARAAERLRIRRTTLVEKMRKYGM 495 >UniRef50_Q026M7 Transcriptional regulator, NifA subfamily, Fis Family n=4 Tax=Bacteria RepID=Q026M7_SOLUE Length = 706 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 37/368 (10%) Query: 159 LDLSRYNAIASRFAEERQQTLDFLKSG-----IATRNPHFNRMIEQIEKVAIKSRAPILL 213 L +A+ R A+E+ D ++S I R+ ++++IE VA + + +L+ Sbjct: 357 LAYHEISALKDRLAQEKIYLEDEIRSELNFEEIVGRSQALRTVLQEIETVA-PTDSTVLI 415 Query: 214 NGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES 273 G TG GK +AR I L FV++NCA + S +FGH KGAFTGA Sbjct: 416 YGETGTGKELIARAIHNLSSRSRNS---FVKLNCAAIPTGLLESEMFGHEKGAFTGAVAQ 472 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 R G A+ G +FLDEIGE+ + Q LL+ ++E+ F GS R + +D +LIA T RD Sbjct: 473 RIGRFELAHHGTVFLDEIGEIPLELQPKLLRVLQEREFERLGSSRTMRTDARLIAATNRD 532 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTE 392 L +V + FR DL+ R+N++ +P LR R EDI + + V++ A G +V TE Sbjct: 533 LATMVEDRNFRADLFYRLNVFPVQVPALRDRPEDIPLLVRHFVQQFARRMGKAVDTIPTE 592 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP 452 + + W GN REL + R + + + + + ++ Sbjct: 593 TMNVLVRY------HWPGNIRELQNLLERAVILSAGPVLKVPLNDLQLQ----------- 635 Query: 453 SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 A + E ++ +R + + S + + R L+ Sbjct: 636 -APAPTTARKTETLESAERRHILEALEAADWVISGPKGAAEALGLKRS---------TLQ 685 Query: 513 KYLARFGL 520 + + G+ Sbjct: 686 ARMEKLGI 693 >UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYU9_DESRD Length = 489 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 104/398 (26%), Positives = 162/398 (40%), Gaps = 23/398 (5%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS-RYNAIASRFAEERQQTLDFLKSGIAT 188 R L + S P P EV ++ + R + ++ + GI Sbjct: 91 RELTIEAMHSGAQAHIASPLHPEEVELVVSRVMPRTHLVSKSEIPAPKLRESDGFHGIVG 150 Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 + + I+++ + + ILL G +G GK +A+ + + FV VNCA Sbjct: 151 NTTVMRELFDLIDRIGEEGESTILLQGESGVGKELVAQALHACSP---RAGHNFVPVNCA 207 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 + S LFG+ KGAFTGA ++++G + ANGG LFLDEIGE+ + QA LL+ ++E Sbjct: 208 AIPDSLLESELFGYEKGAFTGATQAKKGRFQHANGGTLFLDEIGEMRPELQAKLLRVLQE 267 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 K F P G + V +D ++IA T +L V EG+FR DLY R+N+ +P LR R EDI Sbjct: 268 KEFEPVGGMKPVQADVRVIAATNINLELAVNEGRFRTDLYYRLNVVPLEIPPLRDRVEDI 327 Query: 369 EPNLDYEVERHAS-LTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFAT 427 LD RF+ A +A + W GN REL V R+ Sbjct: 328 PLLLDKFTRLFNRGKQSQPKRFSANALKAL------QEYPWPGNVRELKNIVQRLCVLHR 381 Query: 428 SGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD------------RMQLE 475 + + + +I AL A + D+ D + Sbjct: 382 KAVVRVQDLPPQIVSDPELLHTPEEEEEEALSAAVQDLPDMPDMEEETDFNTRVSEFEDR 441 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 ++ + ++ R +L K Sbjct: 442 LILQALIATNGNKKQAAEKLNLKRTTLLEKIKKKQLDK 479 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 102/375 (27%), Positives = 172/375 (45%), Gaps = 20/375 (5%) Query: 145 KEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P E+ + I+ + + I + F + I + ++++ I +V Sbjct: 102 ITKPFSIDEIMLNIERMIEQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRV 161 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A S A +L+ G +G GK +AR I +H+ FV +NCATL S LFGHV Sbjct: 162 AFSS-ATVLITGESGTGKELVARAIHFNGNRKHKK---FVVINCATLSEHLLESELFGHV 217 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 +GAFTGA + ++GL A+GG LF+DEIG++ QA +L+ ++E F P G + D Sbjct: 218 RGAFTGAIKDKKGLFEEADGGTLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVD 277 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 ++IA T + L + V + +FREDLY R+N+ +P LR+R+EDI + + +E++ Sbjct: 278 VRIIAATNQHLLKKVRDKEFREDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKE 337 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR 442 ++ + E + W GN REL ++ R T I L V+ + + Sbjct: 338 NKQIKGLSPETEMEL------YKYHWPGNVRELENAIERAVTLTNEPIIPLHVILPIVRK 391 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 N A + +D+F+ V+ I + + + RQ Sbjct: 392 EDGNNMLLDDLLSHPYKEARKKALDVFNTKY---VMNIINKNSGNVTNAARECKIERQYL 448 Query: 503 ASVNDADRLRKYLAR 517 + L+KY + Sbjct: 449 QRM-----LKKYAIK 458 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 25/347 (7%) Query: 172 AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL 231 A + + I + ++ K+A + + +L+ G +G GK +AR I E Sbjct: 555 APQLDNNPEGNTGHIIVSSDEMKNILMTCRKIAG-TDSTVLITGESGVGKEVVARYIHEQ 613 Query: 232 KQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDE 290 R + FV++NCA + S LFG+ GAF+GA+ + GL+ A+ G LFLDE Sbjct: 614 SPGRQE----FVKINCAAIPESLLESELFGYETGAFSGAKRAGKPGLIEKADRGTLFLDE 669 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IGE+ + QA LL+ ++E+ G + V DF+LIA T RDLRQ+V + FR+DL+ R Sbjct: 670 IGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAATNRDLRQMVRQKYFRQDLFYR 729 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRG 410 +N+ +P LR+R EDI + Y ++++ ++ +A L++ +W G Sbjct: 730 LNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIKLTRDAEELLLSY------SWPG 783 Query: 411 NFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 N REL+ + R+ + +++ + I+ N + P L + E + + Sbjct: 784 NVRELTNLIERLVVTCEESFVDRNIIIEYID----NPEVKTPEILINKIMPLPEAVARVE 839 Query: 471 RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 + ++++ R + + +L V++ +L KY + Sbjct: 840 K----KLLSMARSKGNSTYDMAKLLGVNQS-----TVVRKLHKYFKQ 877 >UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteobacteria RepID=B8K7S4_VIBPA Length = 488 Score = 411 bits (1056), Expect = e-113, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 156/371 (42%), Gaps = 49/371 (13%) Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + L + ++ + IE+V + A +L+ G +G GK +AR I R Sbjct: 129 RKNTLFRSLVGQSHGIKEVRHLIEQV-SSTEANVLILGESGTGKEVVARNIHYHSTRR-- 185 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 SG FV +NC + D S LFGH KGAFTGA SR+G A GG LFLDEIG++ Sbjct: 186 -SGPFVPINCGAIPPDLLESELFGHEKGAFTGAITSRKGRFELAEGGTLFLDEIGDMPMP 244 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 Q LL+ ++E+ F G + + D ++IA T R+L ++ + FREDLY R+N++ Sbjct: 245 MQVKLLRVLQERCFERVGGNTTIKVDVRVIAATHRNLESMIEDESFREDLYYRLNVFPIE 304 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 +P LR R++DI L + R + + F + + + + W GN REL+ Sbjct: 305 MPALRDRKDDIPLLLQELMTRMEAEGAQPICFTPRSINSLM------EHDWPGNVRELAN 358 Query: 418 SVTRMATFATSGRITLDVVE-----DEINRLRYNWQESR--------------------- 451 V RM + + ++ + +I + + R Sbjct: 359 LVERMIILYPNSLVDVNHLPTKYRYSDIPEFQPGYNTGRTVEEQERDAFYDIFSEDFSLE 418 Query: 452 --------PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 +A L ++ +++ + + A + + R Sbjct: 419 SNDLFQDSEAAPQNLPPEGVNLKEMLADLEVNMINQALEAQGGVVARAADMLGMRRT--- 475 Query: 504 SVNDADRLRKY 514 +++RKY Sbjct: 476 --TLVEKMRKY 484 >UniRef50_A8V246 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V246_9AQUI Length = 454 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 175/356 (49%), Gaps = 21/356 (5%) Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 R E + L I +P+ + + +VA + P+L+ G TG GK AR + Sbjct: 118 RKKETDETILCQYLCSIIGSSPYMKNICKLAGEVA-PTDLPVLIIGETGTGKELFARGLW 176 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 +L + + + F+ +NCA + + S LFG+ KGAFTGA ++G ANGG +FLD Sbjct: 177 KLSKRKDK---PFIAINCAAIPENLIESELFGYEKGAFTGAETQKKGKFEIANGGTIFLD 233 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGE+ + Q+ LL+ ++E +FY G + +++ D ++IA T +DL Q+V EGKFREDLY Sbjct: 234 EIGEMPLEAQSKLLRVLQEGSFYRVGGEEEINVDVRVIAATNKDLSQMVKEGKFREDLYY 293 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWR 409 R+N+ TF LP LR+R+EDI ++ + ++ ++ T+ W+ Sbjct: 294 RLNVITFKLPPLRERKEDIPYIVECIINKNNKKINKNIEGFTKDY-----IEKLKSRYWK 348 Query: 410 GNFRELSASVTRMATFATSGRITLDVVE--DEINRLRYNWQESRPSALTALLGAEAENID 467 GN REL V R F +++ +E +E + + + L+ E Sbjct: 349 GNIRELENVVIRSMVFCRDSILSITDLEFLEEGKEEIPDLYDKLKDIIEQLINHE-NAKQ 407 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 ++++ + + +++ + Q+ ++R LRK L + + + Sbjct: 408 TKEKIEKILIENVLKKSNFNLSKSAQILGINRA---------TLRKKLEKLNINIK 454 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 410 bits (1055), Expect = e-113, Method: Composition-based stats. Identities = 129/483 (26%), Positives = 205/483 (42%), Gaps = 55/483 (11%) Query: 68 PETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDY-----------LIHI--TT 114 P +V V+ + E V+A L + + E+Y +++ TT Sbjct: 4 PSLHIVVVDDDPGTCVYIESVFAELGHTCKSFVRPEAAEEYILTHPVDLAIVDVYLGSTT 63 Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQ---PRGPGEVTIIDLDLSRYNAIASRF 171 G V + C + L A +I + G + +D+ IA R Sbjct: 64 GVEVLRRCRVHRPK---LYAVIITGQISLEMAARSIAEGAVDYIQKPIDIDALLNIAERA 120 Query: 172 AEERQQT------LDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 E ++++ + +S I +P + + I +VA S A +L+ G +G GK +A Sbjct: 121 LEHKERSGETPAEQEESESKIVGSSPSMLEVYKLIARVA-PSNANVLITGASGTGKELVA 179 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 R I E + + F VNC + S LFGH KGAFTGA R+GL+ S GG Sbjct: 180 RAIHEHSR---RAEMPFTPVNCGSFAETLLESELFGHEKGAFTGADSVRKGLIESTQGGT 236 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDEI E Q LL+ ++E+ GS++ + D +++A T RD+ L+ EGKFRE Sbjct: 237 LFLDEITETSLGFQVKLLRVLQEQQLRRIGSNKIIPIDVRILAATNRDVPSLIREGKFRE 296 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQ 405 DLY R+ + +P L +RQ DI + + + + V A + Sbjct: 297 DLYYRLAVVQIKIPMLAERQSDIPSLVTHFLRQFNERNQARVSIEQSAVELL------QK 350 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 +W GN REL ++ R+A FA++GRIT VE E + + SA Sbjct: 351 RSWPGNVRELENTIYRLAIFASTGRITGADVEREQESQKNGPKAEPVSAP---------- 400 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 D M+ ++ I + + + + R+ L K R G+T +A Sbjct: 401 -DRLVEMERHQILRILKDVHGNKSEAARRLGIERK---------TLYKKAVRLGITLDAS 450 Query: 526 QDQ 528 + Q Sbjct: 451 EYQ 453 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 178/386 (46%), Gaps = 29/386 (7%) Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMI 197 + R R E+ ++ L + ++ + + + + + I +++ +++ Sbjct: 335 GNIFRVVCNVRDITELNMLKQKLEQVQGLSQHYESQLKTLRIYSGTDKIISKSTEMRKLL 394 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 E + ++A + IL+NG +G GK +A I + F++VNC + + S Sbjct: 395 ETVVRLAE-VDSTILINGESGTGKELIAETIHNHS---ARAKKPFIKVNCGAIPENLMES 450 Query: 258 TLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 LFG+ GAFTGA++ + G A+ G LFLDEIG+L + Q LL+ ++ K G Sbjct: 451 ELFGYEYGAFTGAKKEGKAGYFELAHEGTLFLDEIGDLPFNLQVKLLRVLQSKEINRVGG 510 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + + D +++A T R+L ++V + +FREDLY R+++ +P LR R+EDI + + + Sbjct: 511 RQALKVDTRILAATNRNLLEMVQKKQFREDLYYRLHVIPVIIPPLRDRKEDIPSLIVHFI 570 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 + R + + +A+ W GN REL + R+ ++S I+ D + Sbjct: 571 ALFNRKYKLNKRISPDVVDILMAY------DWPGNVRELENLIERLVVISSSDIISRDEL 624 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 ++ + + SA+ L E ++ +R LE A R + Q + Sbjct: 625 PVHLSSAAVDNPQVSVSAIIPL----KEAVESVERQLLERAFAQYRTTR----QMAQKLE 676 Query: 497 VSRQGKASVNDADRLRKYLARFGLTW 522 V+ A + + A++G++ Sbjct: 677 VN---------ASTVVRKAAKYGISP 693 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 106/405 (26%), Positives = 170/405 (41%), Gaps = 28/405 (6%) Query: 135 RLIQSSPPRKKEQPR-GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 R +++ +P P + ++ Y ++ R E ++ I +P Sbjct: 96 RAMKAGAFDYIHKPFPDPAALDLVVERALEYRQLSRRADEVHRENAAARLGDIVGTSPLM 155 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 +++++I KV S A +L+ G +G GK +AR I + F+ +NC+ + Sbjct: 156 QQLVKEIGKV-TGSHATVLITGESGTGKELIARVIHNYSYDEPR---PFIGINCSAIVDT 211 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KGAFTGA + G A G +FLDEIG++ QA LL+ ++E+ F Sbjct: 212 LLESELFGHEKGAFTGATAGKPGKFELAEDGTVFLDEIGDMSLMLQAKLLRVLQEREFER 271 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G +++ ++IA T R L + V G+FREDLY R+ + T +P LR+R+EDI P + Sbjct: 272 VGGVKRIKLRARVIAATHRALVEEVEAGRFREDLYQRLKVITLQIPPLRERREDIPPLVK 331 Query: 374 YEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + +ER V R E WRGN REL +TR A + Sbjct: 332 HLLERINEKVHKRVTRVPGEVMERLTRL------PWRGNVRELENVLTRAVVLAPGDVLR 385 Query: 433 LDVVEDEINRLRYNWQESRPSA-------LTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 D + + L SA A +A I + + + + K Sbjct: 386 GDDLPALESPLPSPEPGRATSAHHTASAMFAAPAEDDASLIPTLEEAERQLIARAMTVTK 445 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHS 530 Q+ +SR L + L ++GL H+ Sbjct: 446 GHKGRTCQILGISRP---------TLERKLQKYGLAQSQSPQVHT 481 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 168/369 (45%), Gaps = 16/369 (4%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNP 191 L + I++ +P + I R+ + R + + +P Sbjct: 89 LAVQAIKAGAFDFLCKPFQSDGLLIAVERFFRFLDLKRENDRLRGEREE---GEFIGESP 145 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 ++ ++I +A P+L+ GP+G+GK +A + + R + F+++NCA L Sbjct: 146 AMLKVFDRIRALADAC-VPVLVLGPSGSGKELVAGALHRRSKRRDR---PFIKINCAALP 201 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 S LFGH KGAFTGA+++R G +A+GG LF DE+GE+ QA LL+ +E++ Sbjct: 202 EQLLESELFGHEKGAFTGAQQARIGKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQEV 261 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 P G + + + + T R+L + +A+G+FREDLY RIN+ TLP LR+R D+ Sbjct: 262 TPVGGNTPRKVNVRTVFATARNLEEAIADGRFREDLYYRINVVPVTLPPLRERGSDVALL 321 Query: 372 LDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 + + R +L + +AR A LA+ + GN REL +V T G I Sbjct: 322 TERFLRRFCALHERQATLSEQARLALLAY------DYPGNVRELRNAVEHAVLLCTEGEI 375 Query: 432 TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAG 491 + + + R+R Q P+ A + R + ++ + Sbjct: 376 HVGHLPE---RIRAATQSMPPACDDDAGDTPASLAEGVARFERRRIMEALERTGGRKIQA 432 Query: 492 RQLFDVSRQ 500 L +SR+ Sbjct: 433 ADLLGISRK 441 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 177/376 (47%), Gaps = 30/376 (7%) Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS-GIATRNPHFNRMIEQIEKVAIKSRA 209 P ++ ++L + R + + E R D + G+ +P + E I +VA +A Sbjct: 107 PFDLAELELAIKRALSFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVA-PEKA 165 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G TG GK +AR I A + + FV VNCA + + S LFGH KGAFTG Sbjct: 166 TVLVAGETGTGKELVARAIHA---ASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFTG 222 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + R G A+GG LFLDE+ E+ QA LL+A++E G +R ++ D +++A Sbjct: 223 AVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAA 282 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T R+ R + +GK REDLY R+N++ LP L+ R+ DIE + + + V Sbjct: 283 TNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDIELLATHFLAK------RRVDI 336 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + +A + + Q W GN REL + R A + + +I + E+ + + Sbjct: 337 SAQAVQVLM------QYDWPGNVRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFID 390 Query: 450 SRPSALTALLGAEAEN----IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 + A +N + ++++ + + Q + +L ++S + Sbjct: 391 ATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEISER----- 445 Query: 506 NDADRLRKYLARFGLT 521 L L+++G++ Sbjct: 446 ----SLWYKLSQYGIS 457 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 210/497 (42%), Gaps = 42/497 (8%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIE----LHNPWDFE 86 L L + +D E++ ++ + L + + P ++ +++ + P+D Sbjct: 58 LILLDLQMPKMDGFEVMAALKADHSMDYLPVLVLTAQPNHKLQALQAGAKDFISKPFDLV 117 Query: 87 EVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKE 146 EV +H+ + E I + + E +L RKK Sbjct: 118 EVKTRIHNMLEVRLLYKKLEKNNITL-EDIVQKRTV-----ELTKTNLQLGLEIEERKKA 171 Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + T I + A + +E + +F I + +++ +++E+VA Sbjct: 172 EASLRDTYTQIKQLKDKLQAENTYLQKEVARQFNF--DEIIGSSKLLSQVFQKVEQVA-P 228 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 A +LL G TG GK +AR I + + + V+C TL S LFG +GA Sbjct: 229 MHATVLLLGETGTGKGVVARAIHSRSSRKKR---PLITVDCTTLPVALIESELFGRERGA 285 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTG+ + G A+GG LFLDEIGE+ + QA LL+ I++ F GS R + D ++ Sbjct: 286 FTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERLGSPRTIKVDVRI 345 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L + V GKFREDLY R+N++ TLP LRQR+EDI +++ + + G Sbjct: 346 IAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNHFLIKFNKKIGKQ 405 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + T+ A T Q W GN REL +++ R + + + Sbjct: 406 IDIITQD-----ALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILD----------- 449 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 R + L E ++ ++ EH++ + +Q ++ Sbjct: 450 ----RFESFDKLATIEEPSMKALVELEYEHIVKVLQQTGW------RIEGNKGAALILGL 499 Query: 507 DADRLRKYLARFGLTWE 523 + LR + + G+T + Sbjct: 500 NPSTLRARMRKQGITRQ 516 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 102/390 (26%), Positives = 169/390 (43%), Gaps = 25/390 (6%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMIEQIEKV 203 ++P P E+ + + +Q +L G I +P + ++ Q+ ++ Sbjct: 103 VQKPFKPDEIVFVLRKAEERERLVRENRRLKQASLPSTPGGHILGESPALHALLRQVARL 162 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A +L++G +G GK +AR EL + +FV VNC + S LFGH Sbjct: 163 A-PVDTTVLISGESGTGKELIAR---ELHVRSPRAPMSFVAVNCGAIPSGLIESELFGHA 218 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFT AR ++ GL A+GG LFLDE+GEL Q LL+ ++E P G +R + Sbjct: 219 KGAFTDARTAKRGLFAEADGGTLFLDEVGELPLAAQVKLLRVLQEGEIRPVGENRVEKVN 278 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +++A T+RDL +LVA+G FREDLY R+N+ +P LR+R+ED+ + R Sbjct: 279 VRVVAATLRDLSRLVAKGDFREDLYYRLNVVNLRVPPLRERREDVPLLARAFIARFNREL 338 Query: 384 GDSVR---FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 EA ++A W GN REL ++ R A I + + + Sbjct: 339 NREPPVAGLTAEAEALLKSYA------WPGNVRELENAMERAVLLADEPHILPANLPERL 392 Query: 441 NRLRYNWQESRPSALTALL--GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 +L G + ++ ++ A R+ K +L D+S Sbjct: 393 WAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRELEESYIRAALRKTKGNRTRAAELLDIS 452 Query: 499 RQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 + + +G+ +A ++ Sbjct: 453 HRALLY---------KIKEYGIDPDAEAER 473 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 410 bits (1053), Expect = e-113, Method: Composition-based stats. Identities = 110/397 (27%), Positives = 180/397 (45%), Gaps = 24/397 (6%) Query: 132 LPARLIQSSPPRKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRN 190 L + I+ +P + + ++ L R + +R + + ++ Sbjct: 90 LAVQAIRMGAYDFITKPFDHETLVLSLNKALERSRLLRENLNLQRHVQMHEAFQNLVGKS 149 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 R+ E I+ VA K+ +L+ G +G GK R I L Q R S FV VNC + Sbjct: 150 ARMQRVYEAIQMVA-KTDLTVLITGESGTGKDLACRAIHALSQRR---SNPFVAVNCPAI 205 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 + S LFG+ KGAFT A ++R GL + A+ G +FLDEIG++ + QA LL+ ++EK Sbjct: 206 PENILESELFGYRKGAFTHATQNRTGLFQEAHKGTIFLDEIGDISPNIQAKLLRVLQEKV 265 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 P G + VS D +++A T RDL + G+FREDL+ R+N+ +P LR+R EDI Sbjct: 266 IKPLGDTKSVSVDVRVVASTNRDLGDRIRRGEFREDLFYRLNVLPIVMPSLRERPEDIPL 325 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 +++ +E+H + + E +L +A W GN REL + R FA Sbjct: 326 LVNHLIEKHCAALNRPRKSVAPELTEIFL------RAPWPGNVRELENVIVRGLLFAPRD 379 Query: 430 RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA 489 I + V + PS A+ E + F E+ + + + Sbjct: 380 EILPEDVGFHRPVKGRIPGKDAPSTNVPYKDAKEEALRGFHA---EYFGGVLTATRGNVS 436 Query: 490 AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 +L + RQ L++ L R+G+ +A + Sbjct: 437 HAAKLCGLERQA---------LQQLLRRYGIRSDAYR 464 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 174/385 (45%), Gaps = 30/385 (7%) Query: 141 PPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE--ERQQTLDFLKSGIATRNPHFNRMIE 198 R R E+ + +L+ +++++ E + R+ + + Sbjct: 191 IIRVVTNVRDMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRD 250 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 K A K AP+L+ G +G GK +A + + F+++NC + S Sbjct: 251 SAIKFA-KVDAPLLITGESGVGKEVIADLVYRYSPRK---GLPFLKINCGAIPETLLESE 306 Query: 259 LFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFG+ GAFTGA++ R GL ANGG + LDEIGEL Q LL+ +++K FY G Sbjct: 307 LFGYEGGAFTGAKKEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGK 366 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + V D +LIA T RDL+++V + +FR DL+ R+N+ +P LR+R EDI P ++Y ++ Sbjct: 367 KVVKVDVRLIAATNRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLD 426 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 ++ S R + + + TW GN REL + R+ ITLD + Sbjct: 427 KYNKKYNVSKRISGDV------YHAFTNYTWVGNVRELENLIERLVVICDRDEITLDYLP 480 Query: 438 DEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 DE+ + Y W++ +G E + + + E + KS A +L Sbjct: 481 DEMKKAIYVWRDDS-------IGREQTYKEAKEEFEREFFCRALEKYKSSRQAAEKL--- 530 Query: 498 SRQGKASVNDADRLRKYLARFGLTW 522 D + K A++G+ Sbjct: 531 -------GLDHSTIVKKAAKYGIKL 548 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 100/421 (23%), Positives = 174/421 (41%), Gaps = 23/421 (5%) Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLPARLI-QSSPPRKKEQPRGPGEVTIIDLDLS 162 E + + TG L + + I + ++ I L Sbjct: 216 ENTRLPVVLKTGVPERNQVHRLQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILE 275 Query: 163 RYNAIASRFAE--ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 R++ + + I + + + K A +S+A +L+ G +G G Sbjct: 276 RFDQKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARK-AARSKASVLITGESGVG 334 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLR 279 K AR I A +G F+ VNCA + + S LFG+ +GAFTGA++ + G Sbjct: 335 KEQFARAIH---GAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFE 391 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 AN G LFLDEIG++ Q +L+ ++E+ G + DF+LIA T +DL+Q+V Sbjct: 392 LANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVR 451 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLA 399 EG FREDLY R+++ +P LR R++DI ++ +++ + + + + Sbjct: 452 EGTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMF 511 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 W GN REL + R+ + I + +E R Q+ + +L Sbjct: 512 H-----YNWPGNVRELINVLERLFALSDDVHIRAKDLPEEF-YYRDMEQKKLVPMIQSLP 565 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 + + D + + + ++AK + L +SR L L+RF Sbjct: 566 AKQEAMKVVRDEEERGLIERVLKEAKGNKSKAAALLGISRA---------TLYNKLSRFK 616 Query: 520 L 520 + Sbjct: 617 I 617 >UniRef50_A8FWW4 Sigma-54 dependent transcriptional regulator, fis family n=2 Tax=Proteobacteria RepID=A8FWW4_SHESH Length = 535 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 115/466 (24%), Positives = 191/466 (40%), Gaps = 68/466 (14%) Query: 83 WDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI----- 137 W FE V+ + E E E ++H+ G +CW L +R++ Sbjct: 102 WTFEPVFHADIFW----EDSYESEQQILHL--GMASEPVCWTLTGYVSGYCSRMLGEEVY 155 Query: 138 --------QSSPPRKKE-----------QPRGPG-EVTIIDLDLSRYNAIASRFAEERQQ 177 + E +P P + ID L + ++ Sbjct: 156 CIEHQCHAKGDALCHAEVRTKKEWGEEIEPYLPFFQADTIDKVLHEVTTKLTNAEKKINL 215 Query: 178 TLDFLKS----GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 F +S GI R+ + ++ ++A K + +++ G +GAGK +A+ I Sbjct: 216 RTQFAESESAGGIVARSKAMRKTLDFARRIA-KVESSVIITGESGAGKEKIAKLIHGESG 274 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 + FV +NC+ + S FGH KG+FTGA + R GL +ANGG LFLDEIGE Sbjct: 275 RALRS---FVAINCSAVTETLLESEFFGHAKGSFTGANKDRIGLFEAANGGTLFLDEIGE 331 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L A QA LL+ ++EK G + + D +++A T R L + VA G FREDLY R+ + Sbjct: 332 LSASMQAKLLRVLQEKEIRRVGENSPRAVDVRIVAATNRHLAKEVAAGNFREDLYYRLCI 391 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNF 412 + +P LR+R EDI + +ER + G + F E L Q W GN Sbjct: 392 FELEVPALRERPEDILVLSRHFLERTSHKIGKEVIGFYPEVTERLL------QFNWPGNV 445 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 R+L ++ RI L+ + ++ + + + +I D + Sbjct: 446 RQLENTIEHAVVMCQRKRIKLEDLPRGLDMVEISQPKEL-------------SIRRIDDI 492 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + E +++ + A + +S L + + R+ Sbjct: 493 EREQILSALKLLNGNKAEVAKRLGIS---------LSSLYQKIKRY 529 >UniRef50_D0LWE6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LWE6_HALO1 Length = 684 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 102/366 (27%), Positives = 164/366 (44%), Gaps = 33/366 (9%) Query: 161 LSRYNAIASRFAEE----RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 +SR R E +++ + I + + +Q+ KV + +RA + + G Sbjct: 346 VSRLKVAEERLRGENTYLKRREENLRFENIIGESSAMQAIFDQLRKV-VDTRATVCIEGE 404 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 TG GK +A I R + FV NCA L + S LFGH KGAFT A ++G Sbjct: 405 TGTGKELIATAIHYESNRRDKM---FVAQNCAALPENLLESELFGHKKGAFTSADTDKKG 461 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 L A+GG LFLDEIGE+ QA +L+ ++E T P GS R+ D ++I T RDL Sbjct: 462 LFEIADGGTLFLDEIGEMPLSLQAKVLRVLQEGTIRPLGSTRERQVDARIICATNRDLAA 521 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARR 395 V +G FR+DLY R+ ++ LP LR+R+EDI P ++ ++R++ V F+ E Sbjct: 522 EVEKGSFRQDLYYRLVVFPIRLPPLRERREDIPPLCEHFLKRYSREFRQEVLGFSQECLD 581 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFAT-SGRITLDVVEDEINRLRYNWQESRPSA 454 W GN REL V R+ I + + + ++ P Sbjct: 582 VM------STYQWPGNIRELENEVQRLVIQTDAGSWIEVSELSPRLRKVEGTLARIAPKK 635 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 T + ++++ + R+ + Q ++R+G L K Sbjct: 636 GT--------LKAMMEQVERWLLAEALREHDNNKTRTAQSLGITREG---------LHKK 678 Query: 515 LARFGL 520 L+++ + Sbjct: 679 LSKYSM 684 >UniRef50_B2UXC1 Sigma54 dependent transcriptional regulator, Fis family n=3 Tax=Clostridium botulinum RepID=B2UXC1_CLOBA Length = 468 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 162/347 (46%), Gaps = 13/347 (3%) Query: 176 QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 Q D + R+ ++ K A KS A +L+ G +G GK +A I A Sbjct: 124 QNKPDKAFNKFIGRSNKILDILNLATKSA-KSSATVLIRGESGTGKELIAEGIHN---AS 179 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 + G F+ VNCA + + S LFGH KG+FTGA + + G +N G +FLDEIGE+ Sbjct: 180 ERKKGPFIRVNCAAIPENLIESELFGHEKGSFTGAIKRKLGKFELSNDGTIFLDEIGEMD 239 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 + QA +L+ ++ K F G + + D ++IA T R+L ++V G+FREDLY R+N+ Sbjct: 240 KNTQAKILRVLQYKEFQRVGGEETIKVDVRVIAATHRNLEEMVKSGEFREDLYYRLNVIP 299 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFREL 415 +P L+ R EDI +++ + + +G +F+ + ++++ +W+GN REL Sbjct: 300 ILIPSLKDRSEDIPLLVNHFINKF-QKSGKYKQFSKDVMNIFMSY------SWKGNVREL 352 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ-L 474 + R+ I + + I +S T A ++ + +Q L Sbjct: 353 ENVIERILALNEGDVINIKEIPSYIKEETQKENKSNIKIFTENNFIGASKNEVLNMIQDL 412 Query: 475 EHVIAICRQAKSLSAAGRQLFD-VSRQGKASVNDADRLRKYLARFGL 520 + V+ + K + + + + GK + + FG+ Sbjct: 413 DEVLPMKTYEKMIIEKALRKYGSFNAAGKILGLNHKTIAAKAKEFGI 459 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 92/377 (24%), Positives = 169/377 (44%), Gaps = 25/377 (6%) Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRM 196 + + R E+ + +L + A+ + E+ + + L G I ++ R+ Sbjct: 216 DGNITKVVTNVRDISELLELKDELEKTQALTRHYKEKLTEMEEKLGEGEIVAKSKVKKRL 275 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 + Q +VA + +L+ G TG GK +A+ I + Q F+++NC + + Sbjct: 276 LAQAARVAA-FDSTVLITGETGVGKEIVAKYIHQNSNRSEQ---PFIKINCGAIPENLLE 331 Query: 257 STLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH G+FTGA + + G ANGG L LDEIGEL D Q LL+A++++ G Sbjct: 332 SELFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIG 391 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + D ++IA T RDL ++V++G+FREDLY R+++ +P LR+R +DI + + Sbjct: 392 GVKPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHY 451 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 + ++ G + ++ A +++ W GN REL + R+ I Sbjct: 452 IRKYNEKYGVNKGLSSSALEELVSY------NWPGNVRELENMIERLVIMVPENLIETSD 505 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + +I E+ + + + ++ L+ + + + Q+ Sbjct: 506 LPQQIKESNVKILENL---------SLPDAVSKLEKRMLQKAMEQ----SNNTREAAQIL 552 Query: 496 DVSRQGKASVNDADRLR 512 V++ D L Sbjct: 553 GVAQSTVVRKLDKYGLN 569 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 78/307 (25%), Positives = 144/307 (46%), Gaps = 14/307 (4%) Query: 183 KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAF 242 + + +++ + ++A + +L+ G +G GK +A I R + F Sbjct: 381 SENLVVTSAKMRNLLDMVVRLA-SVDSTVLITGESGTGKELIAEIIHSNSSRRDK---PF 436 Query: 243 VEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAM 301 ++VNC + + S LFG+ GAFTGA++ + G + A+GG LFLDEIGE+ + Q Sbjct: 437 IKVNCGAIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVK 496 Query: 302 LLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGL 361 +L+ ++ K G ++ D +++ T R+L ++V + +FREDLY R+N+ +P L Sbjct: 497 MLRFLQNKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPL 556 Query: 362 RQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTR 421 R R++DI P + +E + + + + Q W GN REL + R Sbjct: 557 RDRKDDIPPLAAHFIEVFNHKYKKNKKISPGVVDILM------QYDWPGNIRELENLIER 610 Query: 422 MATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAIC 481 M IT + + + LR S + + + + ++ ++ LE A Sbjct: 611 MVVTTMDDIITSEDLP---SYLRDKVGISSSYIIVSGIVPLRDAVESVEKQLLERAYAKY 667 Query: 482 RQAKSLS 488 R + ++ Sbjct: 668 RTTRQMA 674 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 164/374 (43%), Gaps = 34/374 (9%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-----------SGIATRNPHFNRMI 197 +G + LDL+R + + R + R+ + + I +P N++ Sbjct: 95 KGAYDFLTKPLDLNRLSLLVRRALQNRELIVQHRELIKQIGNRTSFENIVGESPAMNKVF 154 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 + ++K A S+A +L+ G +G GK +A I L + + ++V+CA+ S Sbjct: 155 DMVKK-AAASKASVLITGESGVGKELIANAIHNLSPRK---AKPLIKVHCASFAEGVLES 210 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGH +GAFTGA +G A+ G +FLDEIGE+ Q LL+ ++E++F G Sbjct: 211 ELFGHERGAFTGAVNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGR 270 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + D ++I+ T R+L + + FREDLY R+N+ +P LR+R+ED+ + ++ Sbjct: 271 ETIKVDVRVISATNRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIATFLK 330 Query: 378 RHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 A G + + +A+ A A+ W GN R+L + ++ I ++ + Sbjct: 331 EIAEENGKKITSIDPQAQSALHAY------DWPGNIRQLRNCIESAVIMSSGPVIHIEDL 384 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 + I L P ++ + + E ++ K + + Sbjct: 385 SEPIRSLGETSSIRIPIGVS------------MEDAEKEIILQTLEAQKGNKSKTADVLG 432 Query: 497 VSRQGKASVNDADR 510 + R+ D Sbjct: 433 IGRKTLYLKLDQYT 446 >UniRef50_D0MEW0 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MEW0_RHOM4 Length = 495 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 29/338 (8%) Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 R E Q+ I ++P + + + +V + + A +L+ G +G GK Sbjct: 172 LREENRRLRSEIQRL--HGFDEIVGQSPAMREVFDTMARV-LDTDATVLIEGESGTGKEL 228 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR I + + + FV V C +L + S LFG+ KGAFTGA ++GL A+G Sbjct: 229 IARAIHYNSERKDK---PFVVVFCGSLPDELLESELFGYKKGAFTGALSDKKGLFEVADG 285 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G +FLDE+G+L Q LL+ ++E G + D ++I+ T + LR+LV +GKF Sbjct: 286 GTVFLDEVGDLSPRMQTALLRVLQEGEIRRVGDTQVRKVDVRVISATNKPLRELVQQGKF 345 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 REDLY R+N T+P LR R+ DI + ++++A ++ F EA Sbjct: 346 REDLYYRLNTIQITVPPLRHRRGDIPLLAHHFLDKYAVKKRAHIKGFTPEALELL----- 400 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 + W GN REL ++ R A IT + + ++ P Sbjct: 401 -ERYHWPGNVRELENTIERAVVLARGELITPEDLRLPDTDGADPFEPDLP---------- 449 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 ++ V+ ++ + ++ VSR+ Sbjct: 450 ------LKEVERRVVLRTLKRHGGNISETARVLGVSRR 481 >UniRef50_B5YGW3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGW3_THEYD Length = 449 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 107/394 (27%), Positives = 181/394 (45%), Gaps = 40/394 (10%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS-----GIATRNP 191 +++ + ++ P I L L + I EE ++ + K I + Sbjct: 90 LKAIKIKVEDYLIKPFVYDEIKLSLKKL--IKPSIVEEPKEKIPTFKEKEELCAIIGESV 147 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 + E+I K+A + +LL G TG GK AR I E R + FV +NCA+L Sbjct: 148 EIKLLFEKIRKIA-NTPTNVLLLGETGTGKELFARAIHEASYRRKK---PFVAINCASLP 203 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 + S LFG +KGAFTGA ++GLL A+GG +FLDEIG+L QA LL+ +E++ Sbjct: 204 ENLLESELFGFIKGAFTGAASDKKGLLEIADGGTVFLDEIGDLPLSLQAKLLRVLEDREI 263 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 P GS D + I+ T +DL + V EGKFREDL+ R+N+ T ++P LR+R DIE Sbjct: 264 RPLGSVISKKVDLRFISATNKDLIEEVKEGKFREDLFFRLNVITLSIPPLRERGRDIEIL 323 Query: 372 LDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR 430 + + + A G ++ + +++A + + W GN REL + + F + Sbjct: 324 AHHFMRKFAIKMGKNLKKIDSQALKLL------YKHPWPGNIRELQNVIEQAVVFCETDT 377 Query: 431 ITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAA 490 I + + + I + ++ + ++ E I + + E +A Sbjct: 378 IMPEDLPEYIQHPEKFFDRAKEIPVLSIEEYTKEFILKYQSIYTEQELA----------- 426 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + ++R+ L + ++G+ A Sbjct: 427 --DMLGITRKA---------LWEKRKKWGIPRSA 449 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 176/384 (45%), Gaps = 30/384 (7%) Query: 144 KKEQPRGPGEVTI---IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 E+P ++ + LDLSR ++ + + + ++P ++E I Sbjct: 100 FIEKPLSLEKIILTLKHALDLSRLEEENVLLKQKINRDYE-----LTGKSPPIIELMEMI 154 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 VA + A IL+ G G GK +AR I + + VEVNCA + + S LF Sbjct: 155 SIVA-PTNAWILIMGENGTGKELVARAIHRQSK---RADKPMVEVNCAAIPEELIESELF 210 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH KGAFTGA E + G A+ G +FLDE+ ++ QA +L+ ++EK F G ++ + Sbjct: 211 GHEKGAFTGATEKKRGKFDIAHEGTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVI 270 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 D +++A T +DL + + EG+FR+DL+ R+N+ +P LR R+EDI + + A Sbjct: 271 QLDVRVLAATNKDLEKEMEEGRFRQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFA 330 Query: 381 SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 G+ + + A L + +W GN REL + R+A TS IT+ + + Sbjct: 331 LKEGEPGKTIQDDALALL-----MEHSWPGNVRELKNFIERLAIMTTSNVITVHDIPP-L 384 Query: 441 NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 R + + R L G+ E F++ + + ++S+ Sbjct: 385 PRDGHKVEPFREPGFELLAGSFREAKMDFEKQYISRKLREFDG------------NISKT 432 Query: 501 GKASVNDADRLRKYLARFGLTWEA 524 ++ + L K + +GL + Sbjct: 433 AESIGLERSNLHKKIKAYGLESKN 456 >UniRef50_B5EIR5 Transcriptional regulator, NifA subfamily, Fis Family n=6 Tax=Bacteria RepID=B5EIR5_GEOBB Length = 664 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 101/373 (27%), Positives = 167/373 (44%), Gaps = 40/373 (10%) Query: 157 IDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 I L+ + R E Q +++ I ++ +++QI++VA + + + Sbjct: 313 IQNALAEIRQLKDRLEAENVYLRDQIDVEYKHEEIIGKSEAIRNVLQQIQQVA-PTDSTV 371 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G TG GK +AR I Q + + ++VNCA L + LFGH KGA+TGA Sbjct: 372 LILGETGTGKELIARAIHNAGQRKARA---MIKVNCAALPAALIEAELFGHEKGAYTGAV 428 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 S+ G +ANG +FLDEIGEL + Q+ LL+ I+E F G+ + V +D ++IA T Sbjct: 429 SSQIGRFEAANGSTIFLDEIGELPLELQSKLLRVIQEGQFERLGNSKPVKADVRVIAATN 488 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT 391 L+Q V EGKFREDLY R+N++ +P LR RQEDI + VE + + G ++ Sbjct: 489 VSLKQAVKEGKFREDLYYRLNVFPIFVPPLRDRQEDIPLLVWAMVEEFSKVFGKTIERIP 548 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 + W GN REL V R + G + +D+++ Sbjct: 549 R-----KNMEIMERYLWPGNIRELRNLVERAMILSNGGTLVVDILD-------------- 589 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 +A E ++ +R + ++ ++ D+ L Sbjct: 590 ---GSAAAANEPMTMEAAERKHIGFILEKTGWRIRGKGGAAEILDMK---------PTTL 637 Query: 512 RKYLARFGLTWEA 524 + + G+ + Sbjct: 638 HSRIKKLGVKRKN 650 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 91/354 (25%), Positives = 158/354 (44%), Gaps = 17/354 (4%) Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 + + + F + +P + EQ+ K+A KS + +L+ G +G GK LA+ Sbjct: 124 LLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIA-KSESTVLIRGESGTGKEVLAQ 182 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGM 285 I L H+ G FV +NCA + S LFG+ +GAFTGA++ + G A GG Sbjct: 183 SIHRLS---HRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGT 239 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDEIG++ QA LL+ ++E+ G + + D ++IA T +DL ++A +FRE Sbjct: 240 LFLDEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFRE 299 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATSP 404 DLY R+N+ +P LR+R+ED+ + Y + + G RF+++A + Sbjct: 300 DLYFRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALK------KIF 353 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW-----QESRPSALTALL 459 W GN REL V + +T+ + I + + +E + + L Sbjct: 354 DYHWPGNIRELENMVEYIVNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHL 413 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 I+ + + + + + +S + + R+ Sbjct: 414 PKSLYKINEVEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEKMKRRR 467 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 169/386 (43%), Gaps = 23/386 (5%) Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNR 195 +Q ++P + +I + + + +R + +S I ++ F Sbjct: 92 LQLGAFHYMKKPFKADALRLIVKLALKTQTLKREVRKLKRNDSPLPGRSPIIGKSEAFQE 151 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 M Q+ ++A + + +L+ G +G GK +AR I +L + Q F+ +NCA++ Sbjct: 152 MAAQVREIA-RIPSTVLITGESGTGKEVVARAIHDLSDRKEQA---FIAINCASIPAPLL 207 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA ++GL A+ G +FLDEIGE+ Q LL+ ++E+T G Sbjct: 208 ESELFGHEKGAFTGASGRKKGLFEEAHHGTIFLDEIGEMDMAMQVKLLRVLQERTIRRVG 267 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + + + D ++IA T R+L + + E FREDL+ R+N++ +P LR+R DI Y Sbjct: 268 AVKDIEIDARVIAATNRNLAKRIEEKSFREDLFYRLNVFPINIPPLRERPADIAALAVYF 327 Query: 376 VERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++ + G R + EA + +A W GN REL + R+ + + + Sbjct: 328 LDSFSRSFGRDFRDVSPEAEQLMAQYA------WPGNVRELRNVIERICIMRSGPTLLPE 381 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + EI ++ E + ++ + ++ Sbjct: 382 HLPQEIRSTVAPPPLPAELPISIAADLGLE--EAVSAIEKSLIQQALQKTGWNVLQTAAN 439 Query: 495 FDVSRQGKASVNDADRLRKYLARFGL 520 + R LR + ++GL Sbjct: 440 LKIPR---------GTLRYKMEKYGL 456 >UniRef50_A8UFP5 Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UFP5_9FLAO Length = 616 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 158/343 (46%), Gaps = 20/343 (5%) Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 E + I +P ++ ++ VA + A +L+NG TG GK ++R I E Sbjct: 289 EDEIKELTSGYDIVAEDPKMQNVLSLVKHVA-PTDATVLINGETGTGKELVSRAIHE--- 344 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 A ++ + +NC + + S LFGH KGAFTGA R+G A+ G +FLDEIGE Sbjct: 345 ASNRSDKPLIRINCGAIPTNLIESELFGHKKGAFTGATSDRKGRFLLADKGTIFLDEIGE 404 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 + + Q LL+ I+E F P GS + + ++IA T RDL Q A+GKFREDLY R+N+ Sbjct: 405 MPIELQPKLLRVIQEGEFDPVGSSETIKVNVRIIAATHRDLLQHAADGKFREDLYYRLNV 464 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 + +P LR R ED+ + + + ++ ++ L W GN R Sbjct: 465 FPIEVPALRHRAEDVCLIAGEMINHFSKKLNKPMVELSDIDKSHL-----MDYHWPGNVR 519 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL + R + SG I + V ++ + +E P L + E + +++ Sbjct: 520 ELQNLIERAIIISKSGTINIKDVIPKMQ----SDEEHPPKTLKDKVYTSQELL----KLE 571 Query: 474 LEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRK 513 E+++ +Q + +L + AS L + Sbjct: 572 KENILKALKQTRWKISGKNGAAELLQLPATTLASKIKVLGLER 614 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 170/384 (44%), Gaps = 15/384 (3%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHF 193 + +++ +P E+ +I + + RQ++ + I +P Sbjct: 90 QAMKTGAFDYLNKPFDMEELELIIKKVLGEAQLVKEVEHHRQRSYKAVILENIIGDSPPM 149 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + + ++K++ +L+ G +G GK LA+ I L + F+E+NCA+L Sbjct: 150 LELYKTVKKLSHVKTTTVLIRGESGTGKDLLAKAIHNLNPRSGR---PFIEINCASLPEH 206 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KGAFT A+ + GL+ AN G LFLDEIGEL QA LLK IE KTF Sbjct: 207 LLESELFGHEKGAFTDAKNRKTGLVEIANNGTLFLDEIGELSILLQAKLLKFIETKTFRR 266 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G +VS + +I T R+L Q + E FR+DL+ R+N+ P LR R+EDI D Sbjct: 267 VGGTSEVSVNVFIITATNRNLEQAIREQTFRQDLFYRLNVVPLFSPPLRDRKEDILKITD 326 Query: 374 YEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 Y ++ + G + A A W GN REL + R+ + IT Sbjct: 327 YYLDHYCRKFGKDL-----LSMALDAQHIFLNYDWPGNVRELKNLIERLVILSDGATITG 381 Query: 434 DVVED-EINRLRYNWQESRPSAL-----TALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 + D I + + +E+R + G + ++ ++ + ++ +A ++ Sbjct: 382 RHLPDGMIQPIAASERENRFDPMHVFKQDFSRGEQIPMDEILTAVEKKMIVNALEKADNV 441 Query: 488 SAAGRQLFDVSRQGKASVNDADRL 511 + +SR ++ Sbjct: 442 KTRAAKALGISRYSLLRRISRLKI 465 >UniRef50_Q1IRW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRW0_ACIBL Length = 463 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 86/341 (25%), Positives = 153/341 (44%), Gaps = 12/341 (3%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + R + A +R I +P ++ I VA + + +L++G +G G Sbjct: 119 VERGSLKRQNLAYKRDAAGRNSLDNIVGTSPAMGKLKNTIRMVA-STGSTVLIHGESGTG 177 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR + + F +NC S LFG+VKGAFTGA +++ GL Sbjct: 178 KELVARAVHTCSP---RAGEPFTSINCGAFPETLLESELFGYVKGAFTGAVQNKRGLFEV 234 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 + GG +FLDEI E+ Q LL+ ++E+ P G ++ D ++IA T ++L VA+ Sbjct: 235 STGGTIFLDEISEMTLTMQVKLLRVLQERCIRPVGGTSEIPVDVRVIAATNKNLDAQVAD 294 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF 400 G FREDLY R+++ +P LR+R +DIE ++ ++++A G S+R + Sbjct: 295 GVFREDLYYRLSVIPVQVPPLRERVDDIELLANHFLKKYAPAAGKSIR-----AIRVESL 349 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 + W GN R+L ++ R S + +++ + + + Sbjct: 350 GDLREYDWPGNVRQLENTIERAVALEMSDVLHVEIPTERQKNKPAAAAAVAGFSGNGQVA 409 Query: 461 AEAENIDL---FDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 A+ ID+ ++ + +QA + L +S Sbjct: 410 INADGIDMEAYVANIERSLLQQALKQANGVQTKAADLLKLS 450 >UniRef50_Q0F179 Putative transcriptional regulator, Fis family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F179_9PROT Length = 465 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 106/420 (25%), Positives = 177/420 (42%), Gaps = 36/420 (8%) Query: 125 LLAEARYLPARLIQSSPPRK---KEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF 181 LLA +P ++ + + G E DL + SR ++ + Sbjct: 64 LLASGLSMPVVMLTAETTFGHAAEAYRMGAMEYLPKPFDLDEVRQLLSRVRPAQKASAPA 123 Query: 182 LKSG---IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQF 238 K I R+P +M + +VA S +L+ G +G GK +A+ + E + Sbjct: 124 QKMADGLIIGRSPAMQQMFRTLGRVA-SSDLTVLITGESGTGKEMVAKTLHE---RSQRA 179 Query: 239 SGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 AFV +N A + D S LFGH KG+FTGA + REG A+GG LFLDEIG++ Sbjct: 180 DKAFVAINTAAIPADLLESELFGHEKGSFTGADKMREGRFVQADGGTLFLDEIGDMPLAL 239 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 QA LL+ +EE G + +L+A T ++L +A+G+FREDLY R+N+ + Sbjct: 240 QAKLLRVLEEGRVQRVGGSESKVVNVRLLAATHQNLNTKIAKGEFREDLYYRLNVIPVQI 299 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSAS 418 P LR R++DI ++ +E+ G + A + W GN REL Sbjct: 300 PPLRDRRDDIPELANFLLEQAVKELGMEQPILLDD-----AMDLLSRHDWPGNVRELKNV 354 Query: 419 VTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL------------GAEAENI 466 + R+A ITL V + + + E A A + Sbjct: 355 MRRLAVLTPGATITLTDVALALGNVDNHTGEEETLADAVTRCTRQYLHQLGYASATNLHQ 414 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 L ++++ ++ Q ++ ++R + +RK L ++ + + + Sbjct: 415 HLLEQIEPPLLVLALEQCNGNQLKVSEMLGLNR---------NTVRKLLNKYNINPQYFR 465 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 174/383 (45%), Gaps = 27/383 (7%) Query: 138 QSSPPRKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 Q +P E+ +D SR + F R+ F G+ +P +R+ Sbjct: 110 QHGAHTYLTKPLDISELRQAVDRASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRL 169 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 IE++ VA + + +L+ G +G GK +AR I + + +++ FV +N + L Sbjct: 170 IEKLRSVA-PTDSTVLIQGESGTGKELVARAIHQNSERKNK---PFVPLNISALPESILE 225 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGH GAFTGA R G ANGG LFLDE+GE+ Q LL+ +EE+ G+ Sbjct: 226 SELFGHEAGAFTGAATKRIGKFEYANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGA 285 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + ++ + +L+A T DL+ ++ +G FR+DLY R+++ T LP L R+ DI +D+ + Sbjct: 286 NDEIPINVRLVAATNADLQDMIKKGTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFL 345 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 ++ A + + ++A +A+A W GN REL V M G++ +D Sbjct: 346 KQFAERQKRPIPTVTRQVQQALMAYA------WPGNIRELRNVVEGMMVLDIDGKLDVDD 399 Query: 436 VEDEINRLRYNWQE----SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAG 491 + + I + E P+ L+G + ++ ++ Sbjct: 400 LPEGIGAGHHEHSEVDLIQNPAGNDGLIGRS------LNDVEKYYIARALELTGGKRDEA 453 Query: 492 RQLFDVSRQGKASVNDADRLRKY 514 L + + ++R+Y Sbjct: 454 ANLLGIGER-----TLYRKIREY 471 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 170/372 (45%), Gaps = 14/372 (3%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMIEQIEKVAI 205 +P E+ II + A+ R + G + ++ + ++IEKV Sbjct: 110 KPYEMEELRIITRNALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVT 169 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 +LL G +G+GK A E+ + + +G F+ +NCA + S LFGH +G Sbjct: 170 A-DVTVLLQGESGSGKELAA---HEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERG 225 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA E R G AN G + LDEIG++ Q+ LL+ ++E+ F G ++ D + Sbjct: 226 SFTGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVR 285 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +I+ T RDL + + EG+FREDLY RIN+ +P LR+R+EDI ++ ++ + Sbjct: 286 IISATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYK 345 Query: 386 S-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + V + +A + A+ W GN R+L ++ + + + + ++I R Sbjct: 346 NVVSISNDAMKKLSAY------NWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREE 399 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 ++ L EA+ I L + + + + + + + D+ RQ Sbjct: 400 KTPDSTKNVHYH-LSFREAKKI-LIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQ 457 Query: 505 VNDADRLRKYLA 516 +L K + Sbjct: 458 KIKDLQLNKDIK 469 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 192/467 (41%), Gaps = 24/467 (5%) Query: 53 RSLFETLKRDIASVSPETEVVSVEIELHNPWDFE--EVYACLHDFAR----GYEFQPEKE 106 +++ +T++ + VSPE +VSV + EV E Sbjct: 11 KTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSSCEIARNAEGC 70 Query: 107 DYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNA 166 + + G Q C + + +P ++++++ K + + G V I Sbjct: 71 HWCVMFKHGRLRRQRCALIRKDG--IPVQIVKNASVLKDGEGQIIGAVETITDITDLTTK 128 Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 + + ++ G+ + + E I A +S AP+++ G +GAGK +A+ Sbjct: 129 ESLIASYRQELDAQDRFYGMIGASAPMQALFELIRN-AGQSDAPVIIFGESGAGKELIAK 187 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I E +++VNCA L S LFGHVKG+FTGA REG +A+ G + Sbjct: 188 AIHEAGSRSQF---PYIKVNCAALNESLLESELFGHVKGSFTGAHRDREGRFEAADKGDI 244 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIG+L Q LL+ +EEK G + + D ++I+ T RDL+ L+++G+FRED Sbjct: 245 FLDEIGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISKGEFRED 304 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQ 405 + RIN+ P LR+R+ DI R +G + + EA A + Sbjct: 305 FFYRINVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALANY----- 359 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 W GN REL +++ I + I + P + Sbjct: 360 -NWPGNVRELKSALEFAFVSCHEDLIEPRHLPAPI----AAEPDCAPPQPVPVQSRGPGG 414 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 D+++ +I AK + ++ +SR + +L Sbjct: 415 -ATLDQVKRTRLIDALTSAKGNQSEAARILGISRTSVWAQVKRYQLN 460 >UniRef50_B8DLL1 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DLL1_DESVM Length = 350 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 153/364 (42%), Gaps = 40/364 (10%) Query: 179 LDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQF 238 +D SGI ++ + + KVA + + +L+ G +G GK L R + Q R Sbjct: 1 MDLDTSGIIGQSTSLRDVFRILAKVA-PTDSTVLVTGESGTGKELLVRALHSNSQRR--- 56 Query: 239 SGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 S FV +NC + + S LFGH KGAFT A SR G A+GG +FLDEIGE+ Sbjct: 57 SMPFVPINCGAIPKELLESELFGHEKGAFTHAIRSRPGRFELADGGTIFLDEIGEMDLTL 116 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 Q +L+ ++EK G D +++A T RDL + VA G+FREDLY R+N+ L Sbjct: 117 QVKILRVLQEKEIERVGGAGVKKVDVRIVAATNRDLEREVAAGRFREDLYYRLNVIPLHL 176 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSA 417 P LR+R DI ++ + R G + + R+ A+ +W GN REL Sbjct: 177 PALRERGGDILVLAEHFMRRFCERKGRRCLALAPDTRKVLAAY------SWPGNVRELEN 230 Query: 418 SVTRMATFATSGRITLDVVEDEINR-------------------LRYNWQESRPSA---- 454 + R++ A + + +I P+ Sbjct: 231 FMERLSILADDDVVPPADLPRKILDEVGDIVSLPEPTPPDPLPVATGAASGGMPAGFSWP 290 Query: 455 -LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 +T L D D ++ + A+ + ++ + R ++L+K Sbjct: 291 TITDLRDKGMNLKDFLDTVEERLLDEALTMAEGVKNQAAEILGIKRT-----TLIEKLKK 345 Query: 514 YLAR 517 A Sbjct: 346 KRAD 349 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 147/329 (44%), Gaps = 26/329 (7%) Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 R Q + +GI R P + QI +++ P+ ++G TG GK +AR I Sbjct: 269 RGQKGEDGFAGIIGRTPEMRSLFHQIRDLSVY-DVPVNISGETGTGKELVARAIHGESTR 327 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R+ G FV +NC L S LFGHV+G+F+GA ++G A+ G +FLDE+ EL Sbjct: 328 RN---GPFVPINCGALPEGLVESELFGHVRGSFSGAVRDKKGRFELAHNGTIFLDEVAEL 384 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+ ++E GS++Q S D ++I+ T ++L++ VA+G FREDLY R+N+ Sbjct: 385 PMSTQVKLLRFLQEGVLEKVGSEKQTSVDVRVISATNKNLKKEVAKGTFREDLYYRLNVV 444 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 LP LR R+ DI +Y V A +V +A +A W GN R Sbjct: 445 PIHLPPLRMRKNDIPLLANYFVRHAAMGARTGNVTITDDAMGLLAEYA------WPGNVR 498 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 EL + + A+ +IT + EI + R G+ Sbjct: 499 ELQNIIQFLVIKASGNKITAAHLPPEIQGDGTPLPQKRGRRNKLDTGS------------ 546 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 V +A A +L V R Sbjct: 547 ---VETALAKAGGNKAKAARLLGVGRATL 572 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 116/459 (25%), Positives = 190/459 (41%), Gaps = 48/459 (10%) Query: 71 EVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEAR 130 EV ++ L + W E+ P H T T V Sbjct: 42 EVDPPDLALVDVWLGEDDGLSYLQEIARLPDPPAVVVMSGHGTIDTAV------------ 89 Query: 131 YLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRN 190 + ++S E+P V + + + + R++ + + + Sbjct: 90 ----KALKSGAADYIEKPFSLDRVLTVAANALKLRGLERENRALREKV--SARYEMVGDS 143 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 P + E + +VA + +L+ G G GK +AR + E R SG FV+VNCA + Sbjct: 144 PAIEALRELVARVA-PTEGWVLITGENGTGKELVARSLHEGSVRR---SGPFVDVNCAAI 199 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 S LFGH KGAFTGA R G A+GG+LFLDEIG++ QA +L+ ++E+ Sbjct: 200 PETLIESELFGHEKGAFTGALSRRPGKFEQASGGVLFLDEIGDMALSTQARVLRVLQERQ 259 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 G R + D +++A T RDL ++A +FREDL+ R+N+ + +P LR+R DI Sbjct: 260 LTRIGGTRSIPVDVRVVAATNRDLPGMIARKEFREDLFYRLNVVSIRVPPLRERLSDIPI 319 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 +++ VE G + F+ EA A + TW GN REL +V R+ A Sbjct: 320 LVEHFVEILCRDFGHRPKLFSREALEALC------ERTWPGNVRELKNTVERLLILAPGP 373 Query: 430 RITLDVVEDEINRLRYNWQESR--------------PSALTALLGAEAENIDLFDRMQLE 475 I + +E I E+ P + + + + DR + Sbjct: 374 VIEVRDLEPAIPGTTDRGAEASRGETGEGRGGSPPDPGPGASGMEPDLPLREARDRFERG 433 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 +V+ + + + A Q + R R+R++ Sbjct: 434 YVLGVLARCEGNIARAAQRLGMDRTSL-----HRRIRQW 467 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 95/364 (26%), Positives = 158/364 (43%), Gaps = 11/364 (3%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFN 194 + ++ +P V I + ++ R Q + + + + Sbjct: 104 QAMKEGAYDFVTKPLKRAHVVRIVKNALEKQSLVVENRVLRAQLAEQRSRAVIGSSLAWR 163 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 R ++ + + A S A +LL G +G GK LAR + E + F+ +NCA + Sbjct: 164 RTMDIVHQ-AAPSDATVLLLGESGTGKELLARSLHE---GSARADKPFIAINCAAIPESI 219 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 LFG+ KGAFTGA SREG +A+GG LFLDE+GE+ Q LL+ ++E Sbjct: 220 LEGELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVGEMPRHVQVKLLRVLQEGEIERL 279 Query: 315 GSD-RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G R D +LIA T +L + V EG+FREDLY R+N+ + +P LR+R++DI + Sbjct: 280 GGSGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRLNVISIAVPPLRERRDDIPLLVQ 339 Query: 374 YEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 + ++ +A G + T+ A + W GN REL +V R + + Sbjct: 340 HFLQVYADKNGKFMAGCTQD-----ALDRLCRYAWPGNVRELENAVERAVVLSRGEVLDE 394 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + E+ E+ + A L + +++ + R K + Sbjct: 395 AALPFEVRSGEGALAEAAGAGDPGGALRFAVGTPLAE-IEMAVIHETLRHTKGDKRLAAK 453 Query: 494 LFDV 497 L + Sbjct: 454 LLGI 457 >UniRef50_P40734 Formate hydrogenlyase transcriptional activator n=63 Tax=Enterobacteriaceae RepID=FHLA_SALTY Length = 692 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 104/396 (26%), Positives = 168/396 (42%), Gaps = 38/396 (9%) Query: 133 PARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPH 192 +L++ R I L + E+ +D I R+ Sbjct: 329 NLKLLRQIAERVAIAVDNALAYQEI-HRLKERLVDENLALTEQLNNVDSEFGEIIGRSEA 387 Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 +++Q+E VA +S + +L+ G TG GK +AR I L + V++NCA + Sbjct: 388 MYNVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLSGRSGRR---MVKMNCAAMPA 443 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFGH +GAFTGA R G A+ LFLDE+G++ + Q LL+ ++E+ F Sbjct: 444 GLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFE 503 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 GS++ + +D +LIA T RDL+++VA+ +FR DLY R+N++ LP LR+R EDI + Sbjct: 504 RLGSNKLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLV 563 Query: 373 DYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 + A G ++ E R + W GN REL V R + Sbjct: 564 KAFTFKIARRMGRNIDSIPAETLRTLSSME------WPGNVRELENVVERAVLLTRGNVL 617 Query: 432 TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA-- 489 L + D P ++ E D + + +I + ++ + A Sbjct: 618 QL-SLPD--------ITAVTPDTSPVATESDKEGED-----EYQLIIRVLKETNGVVAGP 663 Query: 490 -AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 Q + R L + R G+ +A Sbjct: 664 KGAAQRLGLKR---------TTLLSRMKRLGIDKDA 690 >UniRef50_Q6AJU9 Related to two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6AJU9_DESPS Length = 531 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 97/374 (25%), Positives = 167/374 (44%), Gaps = 14/374 (3%) Query: 90 ACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQ 147 +H +F E + + I + A L ++ + Sbjct: 48 QDIHILFYDLKFPSETDPITKLGQLQHKFPHLTIVPLISAGMDILVKEILGLQLFFYIPK 107 Query: 148 PRGPGEVTIIDLDLSRYNAIAS--RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 P EV+I N+I +E + G+ + ++ + I ++A Sbjct: 108 PLDYSEVSITVRRALETNSINRGANREQENIKAKPHSFEGMTGDSIPMRQLFDLISRIAD 167 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 + +L+ G +G GK +A+ I + + R + FV VNCA + + S LFG+ KG Sbjct: 168 DDYSTVLIRGESGTGKEMVAKAIHQQSKRRKRN---FVPVNCAAIPEELLESELFGYSKG 224 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA ++ G ++ A+ G LFLDEIG++ QA LL+ ++E+ F P G + D + Sbjct: 225 AFTGATTNKIGRIQYADKGTLFLDEIGDMKPSLQAKLLRVLQEREFEPVGGLKATPVDTR 284 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 ++A T +L +LV +G+FREDLY R+++ +P LR+R+ED+ + VE ++ G Sbjct: 285 ILAATHCNLEKLVEQGRFREDLYYRLSVIPLNIPPLRERKEDLPHLVSLFVENYSLKRGR 344 Query: 386 SV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + F+ A + W GN REL + M+ I D + ++I Sbjct: 345 DLFSFSRRALDTLAS------HQWPGNVRELENLIQHMSVLHAGAIIEFDDLPEKIRNRG 398 Query: 445 YNWQESRPSALTAL 458 + E+ AL Sbjct: 399 LSSCETGRDERQAL 412 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 95/381 (24%), Positives = 164/381 (43%), Gaps = 34/381 (8%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAE-----------ERQQTLDFLKSGIATRNPHFNRMIE 198 GPG+ + A+ R E Q+ + + I + +++E Sbjct: 108 GPGDYLRKPISAEELAAVVQRTLENIRLRKELACLRSQKGGCYDQPSIVACSREMGQVLE 167 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 ++K+A A + + G +G GK +AR I + S F+ +NCA + S Sbjct: 168 MVDKIASSDAATVFIQGESGTGKELVARAIHYQS---ARASQPFMAINCAAVPQTLLESE 224 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 L GH KGAFT A+ ++GL A+GG +FLDEIG++ QA LL+ +EE+TF G R Sbjct: 225 LMGHEKGAFTDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGTR 284 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 + D ++++ T RDL + + + FR DLY RI + +P LR+R++DI P ++ + + Sbjct: 285 DIKVDVRIVSATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIRQ 344 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 VR + +A + +W GN REL + R ++ ++ + Sbjct: 345 FNREFNKKVRGISR-----MAQKILLEYSWPGNIRELRNVIERSVILECEEQLLVENLPR 399 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 E+ + G + E+I + E + A+ +L + Sbjct: 400 ELVAQSVGDNIGPLNFQLPPEGVDIEDI------ERELIRQALEMAQGNQTQAAKLLRL- 452 Query: 499 RQGKASVNDADRLRKYLARFG 519 D R + +FG Sbjct: 453 --------GIDAFRYRMKKFG 465 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 169/395 (42%), Gaps = 35/395 (8%) Query: 134 ARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 + + S P K + G V I D++ + R I + Sbjct: 159 SHYLTSGRPIKNDDGNTVGAVAAI-KDINEVRKLVHRITH----PTMLSFDDIIAESSIM 213 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 N I +K+A + +LL G +G GK AR I + FV +NCA + Sbjct: 214 NETISFAKKIAHG-DSTVLLTGESGTGKELFARAIHMESPRK---DCPFVPLNCAAIPET 269 Query: 254 TAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFG+ +GAFTGA++ + GL AN G +FLDEIG L Q LL+ ++E+ Sbjct: 270 LMESELFGYEEGAFTGAKKGGKHGLFELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVR 329 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 G ++S D ++I T +L +LV EG FREDLY R+N+ LP LR R+EDI P Sbjct: 330 RIGGKEEISVDIRVITATNHNLEKLVNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLA 389 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 ++ + + + G + + ++R + +W GN REL + R A I Sbjct: 390 NHILGQMRTNHGGQYQLSPKSRELLKTY------SWPGNVRELENIIERAVNLANDNIIE 443 Query: 433 LDVV-------------EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 + + E E +Q + A ++ + + + ++ + + Sbjct: 444 GEHLFFGQEDGFSNYEGEMENWEQNQQYQNGQSEAEISVNYKDKDFSQILQSVEKQILQK 503 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + + S A +QL G + ++++KY Sbjct: 504 VLSEHASARKAAKQL------GVSHTTILNKIKKY 532 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 182/396 (45%), Gaps = 30/396 (7%) Query: 137 IQSSPPRKKEQPRGPGEVTIID---LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 ++ +P P E+T + L+ S A R + ++ + + + Sbjct: 105 MRHGAYDFVTKPFSPAELTALAAKALEKSSIVAENQRLRAQLERLDLPSREPL-GTSAAM 163 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 R+ E I K+A +R +LL G +G GK +AR I + + + F+ VNC L Sbjct: 164 QRIAELIAKIA-PTRTTVLLTGESGTGKERVARAIHDQS---DRAARPFLVVNCGALPEA 219 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH KG+FTGA GL R A+GG L LDEIGEL A Q LL+ ++E+ P Sbjct: 220 LMESELFGHEKGSFTGAGARSMGLFREADGGTLLLDEIGELPAALQVKLLRVLQERKVRP 279 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G+ +++ D +++A T RD+ V +G+FR+DLY R+N+ LP LR+R DI + Sbjct: 280 VGAAAEIAVDVRVLAATNRDVEAEVRQGRFRQDLYYRLNVIRIELPPLRERPGDISRLAE 339 Query: 374 YEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + R A+ G VR T+A RA A+ ++ GN REL + R A I Sbjct: 340 RFLRRFAAELGKDVRGLTTDAVRALDAY------SFPGNVRELENMMERAVALAGGPTIG 393 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENID-LFDRMQLEHVIAICRQAKSLSAAG 491 L + + L + P+ L A L E +D + ++ ++ + + A Sbjct: 394 LGDLPSAVAGL-----SASPAPLLAQLPPEGCALDEVIGEVERRLILQALERTGGVRKAA 448 Query: 492 RQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 +L VS LR LA+ L + D Sbjct: 449 AKLLGVS---------FRSLRYRLAKHALAADGEGD 475 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 408 bits (1048), Expect = e-112, Method: Composition-based stats. Identities = 121/431 (28%), Positives = 184/431 (42%), Gaps = 38/431 (8%) Query: 114 TGTHVAQICWFLLAEARYLPARLI-QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIAS--- 169 G + + +LP +I + G ++ LS + S Sbjct: 57 PGMDGLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKN 116 Query: 170 -----RFAEERQ--QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 R EE + S + R+ + EQI + A + A +L+ G G GK Sbjct: 117 ALDFHRLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRR-AAPTNATVLITGENGTGKE 175 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I +L + H+ VEVNCA + D S LFGH KGAFTGA E R G AN Sbjct: 176 LAARMIHQLSKRSHR---PMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVAN 232 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIG++ QA +L+ ++E+ F G R + D +++A T +D+++ + G+ Sbjct: 233 GGTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGR 292 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FR+DLY R+N+ +P LR R +DI ++ ++ A+ + + A F Sbjct: 293 FRQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAV-----FGP 347 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVE-DEINRLRYNWQESRPSALTALLGA 461 Q +W GN REL + RM RI + D +NRL +E+ P L Sbjct: 348 LQQYSWPGNIRELRNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLR-- 405 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL- 520 E +F+R L + SL+AA + L + + G+ Sbjct: 406 --EARSVFERAYLLRKLDEFAWNVSLTAA------------QVGLERSHLHRKMKALGIR 451 Query: 521 TWEAVQDQHSS 531 E D H S Sbjct: 452 EREETLDAHES 462 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 102/407 (25%), Positives = 173/407 (42%), Gaps = 23/407 (5%) Query: 111 HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD----LSRYNA 166 ++ + + L+ + ++++++ + P + +++ LS A Sbjct: 67 LLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAA 126 Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 + + E + + ++ + E I +VA ++ A +L+ G +G GK +A Sbjct: 127 VQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVA-QTSATVLITGESGTGKELIAS 185 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I + + F+++NCA L S LFGH KGAFTGA ++GL A+GG L Sbjct: 186 AIHAKSTRKDK---PFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTL 242 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIG++ Q LL+ +E TF G + +D +LI T RDL E +FRED Sbjct: 243 FLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFRED 302 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQA 406 LY R+N+ + P LR R+ DI + Y +ER+ SL + T A Sbjct: 303 LYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRD-----AMTLLCNY 357 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL+ + F+ + D + +I R S+ L A A Sbjct: 358 DWPGNCRELANIIEHAVIFSRGRTLDKDSLPSQIRT------SDRHSSGLTLNLATA--- 408 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + + + ++ +L D++R + L K Sbjct: 409 -TLADAESALIKKVLEESNWNLKKAAELLDIARGTLYGKMEKYHLTK 454 >UniRef50_A0KL56 Formate hydrogenlyase transcriptional activator n=5 Tax=Gammaproteobacteria RepID=A0KL56_AERHH Length = 709 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 32/377 (8%) Query: 158 DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 ++S + + I ++ +++E+++ VA +S +L+ G T Sbjct: 348 QQEISNTTGAREKTLRVDGPAPQGDFANIIYQSAVMEKVLEKVKLVA-QSDCTVLILGET 406 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +A+ I L + V+VNCA + S LFGH KGAFTGA R G Sbjct: 407 GTGKELIAQAIHALS---ARHDHEMVKVNCAAIPTGLIESDLFGHEKGAFTGALTQRIGR 463 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+ G LFLDE+G++ D Q LL+ ++E G+ ++ D +L+A T DL + Sbjct: 464 FERAHKGTLFLDEVGDMPLDLQPKLLRVLQEHELERVGNSNPIAIDVRLVAATNCDLLSM 523 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 V +FR DLY R+N++ LP LR+R+EDI +++ +++ A ++ +A + Sbjct: 524 VKNKRFRSDLYYRLNVFPIELPPLRERREDIPLLVNFFIKKIAKRMRRTITSIPADAMKM 583 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR-------YNWQE 449 ++ W GN REL + R + L DE+ L+ + E Sbjct: 584 LVSL------PWYGNIRELENIIERAVVMTRGHVLNLS--PDELLPLKGFHKIETLVYDE 635 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVN 506 L A + + + +I + + A Q + R Sbjct: 636 PARELFREPLPALPQGDEAQGEDERVSIIRALKACNGIVAGERGAAQRLGMKR------- 688 Query: 507 DADRLRKYLARFGLTWE 523 L + R G++ + Sbjct: 689 --TTLLSKMKRLGISAK 703 >UniRef50_B6YRB5 Nif-specific regulatory protein n=1 Tax=Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2 RepID=B6YRB5_AZOPC Length = 521 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 77/333 (23%), Positives = 148/333 (44%), Gaps = 22/333 (6%) Query: 169 SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRI 228 ++ + + F + + + +++VA + + +++ G +G GK +A I Sbjct: 188 NQLLQSQSIEKPFRPDNMVGNSALMRELYGLVKRVA-PTNSTVIIRGESGVGKELIAEAI 246 Query: 229 LELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFL 288 +A + FV VNC+ L + S LFG+ KGAFTGA G A+GG +FL Sbjct: 247 H---KASSRIKKPFVRVNCSALPENLIESELFGYEKGAFTGAERQHSGRFELADGGTIFL 303 Query: 289 DEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLY 348 DEI ++ Q LL+ ++++ F G + +D +++ T R+L +++ FREDLY Sbjct: 304 DEIADIPFSVQVKLLRILQQRQFERIGGTHTIQTDVRIVTATNRNLEEMLQNNTFREDLY 363 Query: 349 ARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQAT 407 RI+++ +P LR+R+ DI D+ +++ +V R + A + + + Sbjct: 364 YRIHVFPIYVPALRERRADITILTDHFIQKINKQNQTNVKRITSGALDMLMMY------S 417 Query: 408 WRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENID 467 W GN REL + R T I + + + + + L +LG Sbjct: 418 WPGNVRELENVIERAMILTTDDVIHSYNLPPSL-QTGVSSDTVKVGRLDLVLG------- 469 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 +++ + ++ + A +S + Sbjct: 470 ---KVERQMIMDTLIANRGNVAKSAFQLGISER 499 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 113/434 (26%), Positives = 198/434 (45%), Gaps = 18/434 (4%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIHITTG--THVAQICWFLLAEARYLPA-RLIQSSP 141 EE+Y D P+ + + + T A++ + A A + ++ Sbjct: 41 LEEIYRLQPDLIITDIKMPQCDGFEVLEKAKVCTPKARVI-VITGYASVDSAVQAMKEGA 99 Query: 142 PRKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 +P ++ + I+ L Q I + E I Sbjct: 100 YDYLSKPFPIEQLQLTINKALQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETI 159 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 K+ S A IL+ G +G GK +AR I + + +G F+ V+CA+L + S LF Sbjct: 160 GKI-SNSDASILILGESGTGKEVIARAIHKNSRRS---TGPFIPVDCASLPENLLESELF 215 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 G+ +GAFTGA +++GLL A+GG LFLDE+GEL QA LL+ +EE+ G +R + Sbjct: 216 GYERGAFTGANTTKQGLLEMAHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLI 275 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 + D +++A T RDL + + +FREDLY RIN+ T LP L +RQ+DI +++ ++ + Sbjct: 276 NIDIRVLAATNRDLEKAIRAKEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFS 335 Query: 381 SLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 V F EA +A ++A W GN REL V R + + S + + + ++ Sbjct: 336 QDMNKKVSGFTPEAMQAMKSYA------WPGNIRELRNVVERAISLSGSEMVEISDLPEK 389 Query: 440 INRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSR 499 + + + + L A EA++I R ++E++ + + + + R Sbjct: 390 VIGGQKKILPEQEN-LGAFSFHEAKDI-CLKRFEMEYLKELLDKHHGNITQAAKSAGMDR 447 Query: 500 QGKASVNDADRLRK 513 + + + L++ Sbjct: 448 KTIHRLINKYDLQR 461 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Ta... 558 e-157 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 553 e-156 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 551 e-155 UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional... 536 e-151 UniRef50_C8W392 Two component, sigma54 specific, transcriptional... 533 e-150 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 531 e-149 UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional... 528 e-148 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 528 e-148 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 526 e-148 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 525 e-147 UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulato... 524 e-147 UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4... 523 e-147 UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC ... 522 e-146 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 521 e-146 UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=... 521 e-146 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 520 e-146 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 519 e-146 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 519 e-145 UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional... 517 e-145 UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 ... 517 e-145 UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional... 516 e-145 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional... 515 e-144 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 515 e-144 UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Con... 515 e-144 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 514 e-144 UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator... 513 e-144 UniRef50_Q027A1 Two component, sigma54 specific, transcriptional... 513 e-144 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 511 e-143 UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax... 510 e-143 UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator ... 510 e-143 UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4... 510 e-143 UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxoc... 509 e-142 UniRef50_A6M003 Two component, sigma54 specific, transcriptional... 509 e-142 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 509 e-142 UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-... 508 e-142 UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulato... 508 e-142 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 508 e-142 UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria... 508 e-142 UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regula... 507 e-142 UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator ... 507 e-142 UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional... 507 e-142 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 506 e-142 UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory... 506 e-142 UniRef50_Q2LUG8 Response regulator containing CheY-like receiver... 506 e-142 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 505 e-141 UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax... 505 e-141 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 505 e-141 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 504 e-141 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 504 e-141 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=... 503 e-141 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 503 e-141 UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional... 503 e-141 UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis F... 502 e-140 UniRef50_Q6ARB9 Probable two-component system response regulator... 502 e-140 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 502 e-140 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 501 e-140 UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional... 501 e-140 UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachl... 500 e-140 UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verru... 500 e-140 UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfo... 500 e-140 UniRef50_C6MX44 Two component, sigma54 specific, transcriptional... 500 e-140 UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional... 499 e-140 UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis ... 498 e-139 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 498 e-139 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 498 e-139 UniRef50_B9M610 Two component, sigma54 specific, transcriptional... 498 e-139 UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteob... 498 e-139 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 497 e-139 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_D2R262 Two component, sigma54 specific, transcriptional... 497 e-139 UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC ... 497 e-139 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 496 e-139 UniRef50_D0TB92 Two-component system response regulator n=1 Tax=... 496 e-139 UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional... 496 e-139 UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis F... 496 e-139 UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis F... 496 e-139 UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional... 495 e-138 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 in... 495 e-138 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 495 e-138 UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Con... 495 e-138 UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 T... 494 e-138 UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Se... 494 e-138 UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AA... 493 e-138 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 493 e-138 UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_... 493 e-138 UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulato... 493 e-138 UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis F... 493 e-138 UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax... 493 e-138 UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 ... 493 e-138 UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional... 493 e-138 UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 ... 492 e-137 UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkhold... 492 e-137 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 492 e-137 UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional... 492 e-137 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulato... 491 e-137 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional... 491 e-137 UniRef50_Q023H8 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 490 e-137 UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=... 490 e-137 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 490 e-137 UniRef50_A0LND9 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional... 490 e-137 UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verru... 490 e-137 UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis ... 490 e-137 UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltapro... 489 e-136 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 488 e-136 UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_D2L943 Two component, sigma54 specific, transcriptional... 488 e-136 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 487 e-136 UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional... 487 e-136 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 487 e-136 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 487 e-136 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 487 e-136 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 487 e-136 UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis ... 487 e-136 UniRef50_Q3A103 Two component, sigma54 specific, transcriptional... 486 e-136 UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 ... 486 e-136 UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional... 486 e-136 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 486 e-136 UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate... 486 e-136 UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax... 486 e-136 UniRef50_C1A9W9 NtrC family two-component response regulator n=1... 486 e-136 UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 485 e-135 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 485 e-135 UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 485 e-135 UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator ... 485 e-135 UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis F... 485 e-135 UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional... 485 e-135 UniRef50_Q2LRW3 Response regulator containing sigma 54 interacti... 485 e-135 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 485 e-135 UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxoco... 485 e-135 UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis ... 484 e-135 UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1... 484 e-135 UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional... 484 e-135 UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regula... 484 e-135 UniRef50_A6C332 Two component, sigma54 specific, transcriptional... 484 e-135 UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis ... 484 e-135 UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis F... 483 e-135 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional... 483 e-135 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 482 e-134 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 482 e-134 UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis ... 482 e-134 UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1... 482 e-134 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=... 482 e-134 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 482 e-134 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 482 e-134 UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis F... 481 e-134 UniRef50_UPI00016C3E44 probable response regulatory protein (ato... 481 e-134 UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-ty... 481 e-134 UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein... 481 e-134 UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis f... 481 e-134 UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional... 481 e-134 UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium auto... 481 e-134 UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis F... 481 e-134 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional r... 480 e-134 UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein ... 480 e-134 UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteo... 480 e-134 UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis F... 480 e-134 UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing p... 480 e-134 UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyad... 480 e-134 UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 479 e-134 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 479 e-133 UniRef50_B8FL05 Two component, sigma54 specific, transcriptional... 479 e-133 UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholde... 479 e-133 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 478 e-133 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 478 e-133 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 478 e-133 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 477 e-133 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 477 e-133 UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator... 477 e-133 UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID... 476 e-133 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 476 e-133 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 476 e-132 UniRef50_P19323 Formate hydrogenlyase transcriptional activator ... 476 e-132 UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fi... 476 e-132 UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional... 476 e-132 UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionell... 475 e-132 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 475 e-132 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 475 e-132 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 475 e-132 UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=De... 475 e-132 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_C6C1Z7 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1... 475 e-132 UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/res... 475 e-132 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 475 e-132 UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1... 474 e-132 UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional re... 474 e-132 UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC ... 474 e-132 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 474 e-132 UniRef50_B8DK61 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis F... 473 e-132 UniRef50_Q220U8 Two component, sigma54 specific, transcriptional... 473 e-132 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 473 e-132 UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis f... 473 e-132 UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA 473 e-132 UniRef50_B3E653 PAS modulated sigma54 specific transcriptional r... 473 e-132 UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opit... 473 e-132 UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammapro... 473 e-132 UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis F... 473 e-132 Sequences not found previously or not previously below threshold: UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 483 e-135 UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional... 480 e-134 UniRef50_B3QW87 Two component, sigma54 specific, transcriptional... 478 e-133 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 476 e-133 UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional... 476 e-133 UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional... 475 e-132 UniRef50_D2U436 Two-component system, NtrC family, nitrogen regu... 475 e-132 UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional... 474 e-132 UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gamma... 473 e-132 UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional... 473 e-132 UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candida... 473 e-131 >UniRef50_P38035 Transcriptional regulatory protein rtcR n=139 Tax=Bacteria RepID=RTCR_ECOLI Length = 532 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 532/532 (100%), Positives = 532/532 (100%) Query: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK Sbjct: 1 MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLK 60 Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ Sbjct: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQ 120 Query: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD Sbjct: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG Sbjct: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA Sbjct: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG Sbjct: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT Sbjct: 361 LRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVT 420 Query: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI Sbjct: 421 RMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 Query: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS Sbjct: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 112/487 (22%), Positives = 192/487 (39%), Gaps = 34/487 (6%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 ++++ L+ D + TL ++ T + E+ D Sbjct: 4 KKKMEKILLVDDDP--GVLATLTEVLSDAGYRTHTAT-----DGAEAVAELDKQFFDVVV 56 Query: 98 GYEFQPEKEDYLI--HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 P + + H+ + Q + I+ +P E+ Sbjct: 57 TDLNMPGMDGMGVLKHLQKHSQDTQCLVLTGFGSIRNSVEAIKMGAFDYITKPVKFDELL 116 Query: 156 IIDLDLSRYNAIASRF-AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ + ++Q + +P R+ E IEKVA + + +L+ Sbjct: 117 HSVSTAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVA-DTDSTVLIT 175 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +AR I R V +NC + + S LFGH KGAFTGA ++R Sbjct: 176 GESGTGKELIARAIHYNSPRRD---DPMVIINCGAIPEELLESELFGHEKGAFTGAHKTR 232 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G ANGG +FLDEIG++ + Q LL+ I+E+ F GS R + D +++A T +DL Sbjct: 233 IGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDL 292 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEA 393 + V + +FREDLY R+N+ +P LR R+ DI +D+ + + A+ V R + A Sbjct: 293 MEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAA 352 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 A + W GN REL V R+ ++ I + + I L P Sbjct: 353 MNALMG------HHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGL----DSKEPE 402 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 A L + + ++ +A + +L ++R L + Sbjct: 403 AGLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINR---------TTLVE 453 Query: 514 YLARFGL 520 + R + Sbjct: 454 KMKRKNI 460 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 109/470 (23%), Positives = 175/470 (37%), Gaps = 24/470 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L + L++ + + V + + PE Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQ-----VFTSTRGKHGLDIIRKETPSLVILDLKMPE 60 Query: 105 KEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + I ++ +P E+ ++ Sbjct: 61 MDGLEVLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPFDLDELKMVIRQAL 120 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 N + R + I + + + IEKVA S A +L+ G +G GK Sbjct: 121 MVNHLQEEVTFLRSELNK-KYGQIVGNSQAIHDVCGLIEKVA-DSNATVLVTGESGTGKE 178 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 A I +L R + FV +NCA L S LFGH KGAFTGA + G AN Sbjct: 179 ITALSIHQLSSRRDK---PFVPINCAALPESLLESELFGHEKGAFTGAVARKLGRFELAN 235 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G LFLDEI E+ Q LL+ ++EK F G + D ++IA T RD + + +G Sbjct: 236 QGTLFLDEITEMPLSMQVKLLRVLQEKEFERVGGTDSIKIDVRVIAATNRDPMECIRKGT 295 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FREDL+ R+N+ LP LR+R EDI + +++ R + EA +++ Sbjct: 296 FREDLFYRLNVLPIHLPPLRERTEDIPLLAMHFIKKFNPSQ--EQRMSPEAMGLLISYE- 352 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL + R A I + EI +L E+ + Sbjct: 353 -----WPGNIRELQNVIERSIILAQGNEIKPHHLPKEIQKLDEVKNETTHGLIINFPDDG 407 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 FD ++ E ++ ++ QL ++R RL+ Sbjct: 408 IS----FDEVEKELILKALEKSNGNQTRAAQLLGITRSALLYRAQKYRLK 453 >UniRef50_C9RBQ4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Ammonifex degensii KC4 RepID=C9RBQ4_AMMDK Length = 470 Score = 536 bits (1381), Expect = e-151, Method: Composition-based stats. Identities = 108/485 (22%), Positives = 176/485 (36%), Gaps = 31/485 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L +S+ E LK + V E+V PE Sbjct: 4 LVLVVDDEKSVCEALKDVLEESGYS-----VVTATSGREALEKVNLIRPHAVLLDIRMPE 58 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + + ++ +P E+ L Sbjct: 59 MDGIKVLQALREKHPGVPVILMTAYSDTQTTINAMRYGAFEYIVKPINLDELL---STLE 115 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + + + + +P + + I ++A S +L+ G +G GK Sbjct: 116 KATTVTEPLVTVGKGEIAPRPGTLIGCSPAMQEVYKTIGRIA-DSDVTVLIQGESGTGKE 174 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A I FV+++C + + S LFGH KGAFTGA + G A+ Sbjct: 175 LVAEAIHYNSPR---QGKPFVKIDCTAIPENLLESELFGHEKGAFTGAHTRKLGKFELAD 231 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDEIG++ QA LL+ ++EK F G D ++IA T +DL + V G Sbjct: 232 GGTVFLDEIGDISPALQAKLLRFLQEKAFERVGGTETRRVDVRIIAATNKDLEERVKSGL 291 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FREDLY R+N+ LP LR+R+EDI +DY V G V T + Sbjct: 292 FREDLYYRLNVVEIKLPPLRERKEDIMLLVDYFVSLSNRKFGKQVTGLTRSVA-----DI 346 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 Q W GN REL R A IT + + + + R E+ A + Sbjct: 347 LLQYNWPGNVRELRNVCERAVLMARGNVITPESLPEYLLRAVRGRTEAWHPAEDRGV--- 403 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 ++ M+ ++ + + A + +SR L + G+ Sbjct: 404 LPLKEMVAEMERSAILRALEEYRGNKTAVARALGMSR---------TTLYAKMKELGIAD 454 Query: 523 EAVQD 527 +D Sbjct: 455 PENKD 459 >UniRef50_C8W392 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W392_DESAS Length = 459 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 102/480 (21%), Positives = 192/480 (40%), Gaps = 28/480 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L + E LK + E + + + + D P+ Sbjct: 3 KVLIVDDEEGVCEMLKDVLEDEGFEITLAYNAKDA-----LKIMETEFPDTVLLDIRLPD 57 Query: 105 KEDYLIHITTGTH--VAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + + + ++ +P E+ + Sbjct: 58 ADGIEVMDKLKQMGIEVPVILMTAFGTTEIAIQAMKQGAHDYLNKPLNLDELVLAVQKSI 117 Query: 163 RYNAIASRFAEERQQTLDFLK--SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + + S A R++ ++ H + + I KV + S +L+ G +G G Sbjct: 118 KMQRLVSEVAILREELDQETDSVDSFIGQSRHMQDVFKTIGKV-VDSDITVLIQGESGTG 176 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I + + F+++NCAT+ S LFGH KG+FTGA + G Sbjct: 177 KEVVARTIHSNSRRSSR---PFIKINCATIPEQLMESELFGHEKGSFTGAVSQKAGKFEI 233 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+ G++FLDEIGEL QA LL+ ++EK F G + + D +++A T R+L +V E Sbjct: 234 AHNGIVFLDEIGELPLHTQAKLLRVLQEKEFERVGGTKSIEVDVRILAATNRNLEDMVQE 293 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF 400 GKFREDLY R+N+ LP LR+R+EDI ++Y V++ A ++ ++ A Sbjct: 294 GKFREDLYYRLNVVNVKLPPLRERKEDISLLINYFVKKFARKYNKNISGISQ-----EAM 348 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 + + W GN RE+ + A + + LD + I + + ++ Sbjct: 349 IFAEKYAWPGNVREIKNVCEQAVVMARNSVLMLDDMPL-IGNGNGFLEFKNNAKISLDTN 407 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + D+ ++ + ++ + + ++R+ L + + L Sbjct: 408 DKRSLKDIVAEVEKQVILKSLNENNWNRQNTAKALGLNRR---------SLYAKMKEYDL 458 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 99/487 (20%), Positives = 187/487 (38%), Gaps = 31/487 (6%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 I ++ ++ D E R+ ++ V E + + Sbjct: 12 MKNISQILVIED-------EAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVIL 64 Query: 98 GYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV- 154 F P I + + ++ +P ++ Sbjct: 65 TDLFLPGVSGIEILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLHFEKLQ 124 Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 II + + +A +Q + I + + ++EKV + + + IL+ Sbjct: 125 VIIAKAVEKSRLVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRMEKV-LNTDSTILIL 183 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ I R + FV +NC + + S LFGHV+GAFTGA + Sbjct: 184 GESGTGKELVAKAIHYNGHRREK---PFVAINCGAIPAELLESELFGHVRGAFTGAVADK 240 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G + A+ G +FLDEIG + Q LL+ ++E+ GS +++ D ++I+ T +L Sbjct: 241 TGKFQQAHQGTIFLDEIGTMPLHLQMKLLRVLQEQEVEKVGSSKKIKLDVRVISATNCNL 300 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEA 393 + V +G+FR DLY R+N+ LP LR+R+EDI Y +++ + + A Sbjct: 301 EEEVEQGRFRADLYYRLNVIPIALPPLRERREDIALLARYFLQKTCTEMNQPLISITPGA 360 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 + W GN REL + R T S I + I+ ++ + Sbjct: 361 MNCLENY------HWPGNVRELENVIERTVTLTDSIAIGKSDLPANISGSCCEDEDPQ-I 413 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + L + + ++ ++ + + + + A L ++ R L + Sbjct: 414 SCPRLTESGMDMPEVIAGIERCLIKSAMGLSGGVKARAASLLNIKR---------TTLVE 464 Query: 514 YLARFGL 520 + R G+ Sbjct: 465 KIKRLGI 471 >UniRef50_D0LFQ8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LFQ8_HALO1 Length = 515 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 119/512 (23%), Positives = 188/512 (36%), Gaps = 58/512 (11%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYA 90 + + E +D R L + + + + EV + + P Sbjct: 9 ILVVDDEQDNLDAFRFNFKRAFRLLCASSGEEALEILRDNEVAVIVTDQRMPR-----MT 63 Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSS-PPRKKEQPR 149 L + E QP+ ++ T V I R +P Sbjct: 64 GLELLLKAAEIQPDAVGIILTAYTDLDVL--------------VDAINLGQIYRYVTKPW 109 Query: 150 GPGEVT-IIDLDLSRYNAIASRFAEERQQTL-----------DFLKSGIATRNPHFNRMI 197 E+ I+ L RY + Q F I + ++ Sbjct: 110 EAKELRGILTHALERYALLRENQRLMAQLREYTGYLNQEIHGAFDFGNIIGDSAALGEVL 169 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 ++E+VA + + +LL G TG GK +A I +Q FV VNCA L S Sbjct: 170 SKVEQVA-PTNSTVLLRGETGTGKELVAHAIHINSSRENQ---PFVRVNCAALAPGVLES 225 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFGH KGAFTGA R G A+GG LFLDE G+L + Q LL+A++E+ F G Sbjct: 226 ELFGHEKGAFTGAVAQRPGRFELADGGTLFLDECGDLPMEVQIKLLRALQEREFERVGGT 285 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + + D ++I+ T RDL ++ G FREDLY R+N++ LP LR R ED+ + + + Sbjct: 286 QTIKVDVRVISATNRDLEAMIEAGSFREDLYYRLNVFPIHLPPLRDRLEDLPALVAHFIA 345 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 + A A A TW GN REL + R A + D ++ Sbjct: 346 KFARSGMTRTPGVRGA-----ALDKLRSYTWPGNVRELENIIERAMILARGRELDADHLD 400 Query: 438 DEINRLRYNWQESRPS--------ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA 489 PS + + + + +IA ++ + A Sbjct: 401 FGRRAQNATPVSGTPSVISETASHSPPLIGDESKPLAERLLDSERREIIAAVEKSNNNIA 460 Query: 490 AGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++ ++R L + + GL Sbjct: 461 SAARMLGINRS---------TLYYRMRKHGLE 483 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 104/480 (21%), Positives = 191/480 (39%), Gaps = 35/480 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L S+ + L + + + ++ + ++ D PE Sbjct: 5 RVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQD-----KLMQFKPDVLITDIRMPE 59 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 K+ + + I + + + + ++ +P E + Sbjct: 60 KDGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAV 119 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + F + Q+ I +P + + I +VA S A +L+ G +G GK Sbjct: 120 AQSDTVATF-PQAQEPASSTGINIIGNSPSMRNVYKDIGRVA-DSNATVLIQGESGTGKE 177 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR I R+ F++VNCA L S LFG+ KGAFTGA + G A+ Sbjct: 178 LVARAIHYNSSRRN---NPFIKVNCANLPDSLLESELFGYEKGAFTGASSLKVGRFELAH 234 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +F DEIGE+ QA LL+AI+EK F G + + + +++A T R L+Q V EG+ Sbjct: 235 EGTIFFDEIGEISLATQAKLLRAIQEKEFDRVGGTKTIKVNVRILAATNRKLKQSVREGE 294 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FREDL+ R+N+ +P LR R+EDI + + + ++ ++ F+ EA + + + Sbjct: 295 FREDLFFRLNVVNIEIPPLRDRKEDIPLLIAHFLAKYNKEFNKEIKGFSKEAIKLLIGY- 353 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL V R A I + + + S+ +L Sbjct: 354 -----DWPGNVRELENVVERSIIMARGAIIVPEDI-------QLGATVSQQPTELEILDE 401 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++ + ++ + ++ ++R+ L + G+ Sbjct: 402 NLSLKQIISDVERKVILKALEENNWCRTTVAKVLKINRR---------SLYAKMKELGIE 452 >UniRef50_C8WZC4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZC4_DESRD Length = 448 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 108/489 (22%), Positives = 197/489 (40%), Gaps = 48/489 (9%) Query: 38 SLVIDRLELLHDARS--RSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDF 95 R+ L+ D + + L L ++ V + + D Sbjct: 1 MSTKKRILLIDDEPNTLKVLSAFLTKEGYEVGTAKDGR---------SGLNHLQEGGWDM 51 Query: 96 ARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGE 153 P+ I + + + + ++ +P P E Sbjct: 52 LITDLKLPDITGLDILEQVKATWPKLPVVMITAYGSISNAVQAMKLGAFNYLTKPVDPDE 111 Query: 154 VTIIDLDL-SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 + ++ ++ R + RQ + + ++ + IEKVA + A +L Sbjct: 112 LLLLVQNVFERSQLLEENQTMRRQLRDRYSLGNMVGKSKAMQELFNLIEKVA-QYEANVL 170 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 + G TG GK +AR I Q + + FV ++CA + S LFGH +GAFTGA E Sbjct: 171 VTGETGTGKELVARGIHYAGQ---EENLPFVPIDCAAVPETLLESELFGHSRGAFTGAAE 227 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 ++G + A+GG LFLDEIGEL Q L+ ++EK G R+ D ++IA T R Sbjct: 228 QKKGQIELAHGGTLFLDEIGELPLALQKKFLRFLQEKEIVRLGETRRRKVDVRIIAATNR 287 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNT 391 DL +A G++REDL+ R+N+ + +P LR+R++DI P +++ + ++ + G +++ Sbjct: 288 DLEAEIAAGQWREDLFYRLNVISIEIPPLRERRDDIPPLVNHFLAKYNAQNGKAIQGMTG 347 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 E ++A+ W GN REL + R I + + ++ Sbjct: 348 EVMEVFMAY------DWPGNVRELENVIERAVVLCMGDSIAMSCLPPKLQERSAP----- 396 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 A + + M+ ++ + + +A + +SR+ +L Sbjct: 397 ---------APSTDGVNLMEMEKRLIVQTLEKTEQNQSAAARELGISRK---------QL 438 Query: 512 RKYLARFGL 520 R + GL Sbjct: 439 RTKMKHHGL 447 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 112/444 (25%), Positives = 188/444 (42%), Gaps = 29/444 (6%) Query: 87 EVYACLH-DFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPR 143 ++A +H D PE + + + + ++ Sbjct: 42 HLFADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFD 101 Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF-LKSGIATRNPHFNRMIEQIEK 202 +P E+ +I + ++ Q I T +P + + K Sbjct: 102 YVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAK 161 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 +A+ S+A +L++G +G GK +AR I + G F++VNCA L S LFGH Sbjct: 162 IAL-SQASVLISGESGTGKELIARAIHYNSRR---AKGPFIKVNCAALPESLLESELFGH 217 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA+ R+GL AN G L LDEIGE+ QA LL+ ++E+ F G + + Sbjct: 218 EKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKV 277 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++IA T RDL+ +V EG FREDL+ R+N+ LP LR R+EDI ++ +++ +S Sbjct: 278 DIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSE 337 Query: 383 TGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 + + A A +W GN RELS + R + I + + +I Sbjct: 338 NQRDIIDIDPMAMSLLTA------WSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIR 391 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 + N E + + + E + R++ ++ + Q + + +SR+ Sbjct: 392 QPVCNAGEVKTAPVG-----ERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRA 446 Query: 502 KASVNDADRLRKYLARFGLTWEAV 525 L L +G+ V Sbjct: 447 ---------LMYKLQEYGIDPADV 461 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 111/478 (23%), Positives = 187/478 (39%), Gaps = 25/478 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L S+ L+ + + V I L ++V D P+ Sbjct: 7 HILVADDDPSIRTILRDLLEDEGYQ-----VSIALDGEQVIDQVQQSSPDLILMDVRMPK 61 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + + + +Q +P ++T Sbjct: 62 IDGIEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPFDLDDITRTINRFF 121 Query: 163 RYNAIASRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 ++++ + S I +P + + I VA S A +L+ G TG GK Sbjct: 122 EQQKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTIGLVAA-SDATVLITGETGTGK 180 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A I G V+VNCA L S LFGH KG+FTGA R+G A Sbjct: 181 ELVAETIHYNSTFSQ---GPLVKVNCAALPETLLESELFGHEKGSFTGADRQRKGRFELA 237 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 + G +FLDEIGE+ Q LL+ ++E+ F G + D ++IA T + L + VA G Sbjct: 238 HKGTIFLDEIGEMTLGTQRKLLRVLQEREFERVGGSSTIKVDTRVIAATNKKLEEEVAAG 297 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAF 400 KFREDL+ R+N+ LP LR+R+EDI +DY +++H G + EA + + Sbjct: 298 KFREDLFYRLNVIHIHLPPLRERKEDIPLLVDYFLQKHRYHKDGPPASISEEAIKVLM-- 355 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 + W GN REL ++ R A G IT + + + R L+ ++ Sbjct: 356 ----EHDWPGNVRELENTIERAVILAQGGVITTHHL------VFSQIRTGRNIDLSEVID 405 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + ++ + ++ +AK A ++ D+S + + Sbjct: 406 KTRSLDEAMRIIESKIILEALEKAKGDHALAAEILDISESELKRKLRTADKYRREEQL 463 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 117/513 (22%), Positives = 203/513 (39%), Gaps = 48/513 (9%) Query: 19 RGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASV--SPETEVVSVE 76 + + + + + E + + L +L R L + + +V E + Sbjct: 18 SAMENRQENQHRILVVDDEESMREFLCILL-KRDGYLVDAVSDGQQAVACLKEQNYDLII 76 Query: 77 IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARL 136 ++ P + + L H+ + Sbjct: 77 SDIKMP-------------------RLDGFGLLDHVKERFASTAMIMITAFSTAEQAVDA 117 Query: 137 IQSSPPRKKEQPRGPGEVTIIDLD-LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNR 195 ++ +P E+ ++ + L R + +++ F + I ++ Sbjct: 118 MKKGAYDYITKPFKNEEIRLVVENALERMDLRRENLQLKKELGQRFSFANIIGKSKVMQG 177 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + + IEKV+ S+ +L+ G +G GK +AR I + FV + C + + Sbjct: 178 VYDLIEKVSA-SKVNVLITGESGTGKELVARAIHYNSDRHDR---PFVAIYCGAIPENLL 233 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA + ++GL A+GG LFLDEI EL Q LL+ I+E F G Sbjct: 234 ESELFGHEKGAFTGAVQQKQGLFEVADGGTLFLDEIAELPPMMQVKLLRVIQEHEFRKVG 293 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 R + D +L+A T +DL Q V E +FREDLY R+N+ LP LR R+EDI + + Sbjct: 294 GTRDLKVDVRLVAATNKDLAQAVTEDQFREDLYYRLNVIQVGLPPLRDRREDIPLLVSHF 353 Query: 376 VERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +++ G S R +L + W GN REL +V R G IT D Sbjct: 354 LQKLTP--GFSTTIPDGVMRRFLDY------HWPGNIRELENTVERCVVLGGKGEITEDS 405 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + + + + LT L + D ++ + ++ + + +L Sbjct: 406 LPPHMLCISGTGDQ----QLTELPEEGLDLDDYLGAIEKDILLKALDRTGGVRKRAAELL 461 Query: 496 DVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 ++ +R LA+FG+ E ++ Sbjct: 462 HIT---------FRSIRYRLAKFGIEAEGGDER 485 >UniRef50_A9G6P0 Sigma-54 dependent DNA-binding response regulator n=2 Tax=Myxococcales RepID=A9G6P0_SORC5 Length = 481 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 116/486 (23%), Positives = 190/486 (39%), Gaps = 32/486 (6%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L +L L ++ E + D P+ Sbjct: 8 ILVVDDEANLRRVLSAQLSRDGYEVHTAE-----DGEEGLAFLKEHHIDLVITDLRMPKV 62 Query: 106 EDYLIHITT--GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + + + +++ +P EV ++ R Sbjct: 63 DGMDLLRAALRDDPSRPVVLLTAHGTVDNAVEALKTGAFDYITKPFDQNEVRVVVKKALR 122 Query: 164 YNAIAS----RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 +AS R Q + GI +P + +E+VA + +L++G +G Sbjct: 123 TRDLASADATRDVSAAQPRGGSDRFGIIGESPPIQELYAILERVA-DTPTTVLISGESGT 181 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +AR + E R + F++VNCA + D S LFG+ +GAFTGA S+ G Sbjct: 182 GKELVARALHENSGRRDR---PFIKVNCAAIPKDLMESELFGYERGAFTGAVASKPGRFE 238 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A+GG LFLDEIGE+ + Q LL+ ++E F G + + D +L+A T RDL++ +A Sbjct: 239 LASGGTLFLDEIGEIPNEMQVKLLRVLQESEFERVGGIKTIHVDVRLVAATNRDLKREIA 298 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWL 398 G FREDL+ R+N+ LP LR R+ DI + V + + S+ EA Sbjct: 299 AGTFREDLFYRLNVVPIALPALRDRRSDIPHLCAHFVAKFNARLKKSIESIEPEALERLA 358 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN----------WQ 448 + W GN REL V R FA RI LD + +EI + Sbjct: 359 S------HAWPGNIRELENVVERALLFADGARIRLDDLPEEIRGGATSAPGAALPLAAAA 412 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 +A + G + + +++ + + +Q +L +SR+G Sbjct: 413 ADTSAAPSTPDGLKEQVKAAMSKLERDLIERALKQTHGNVTHAARLLKISRKGLQLKMKE 472 Query: 509 DRLRKY 514 LR+ Sbjct: 473 LNLRER 478 >UniRef50_Q2LSK2 Sigma-54 dependent transcriptional regulator n=4 Tax=Bacteria RepID=Q2LSK2_SYNAS Length = 472 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 102/443 (23%), Positives = 181/443 (40%), Gaps = 26/443 (5%) Query: 86 EEVYACLHDFARGYEFQPEKEDYLIH-ITTGTHVAQICWFLLAEARY-LPARLIQSSPPR 143 + ++ P + + + I + ++ Sbjct: 52 DAFVEDKYELVITDLKMPNGDGLELLKFVKDMNPDNIVIMMTGYGTVDSAVEAMKLGAFD 111 Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEK 202 +P VT+ Y ++ R + + + + + IEK Sbjct: 112 YISKPMRNDLVTLTVNRALSYASLQEENVTLRDHLREQYDFGKMLGYSECMKTIFDTIEK 171 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA KS + +++ G +G GK +AR I ++ + + VNC + D S LFGH Sbjct: 172 VA-KSDSTVIIYGESGTGKELVARAIHFNS---NRNNFPLIPVNCGAIPEDLLESELFGH 227 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA +R G A GG +FLDEIG++ Q +L+ I+EK F G + +++ Sbjct: 228 EKGAFTGAIRNRLGRFELAQGGSIFLDEIGDMSPALQVKVLRVIQEKQFERIGGVKTINA 287 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++IA T ++L V E +FREDL+ RIN+ LP LR+R DI ++ +++ A Sbjct: 288 DVRIIAATHQNLELAVTEKRFREDLFYRINVIPIHLPALRERGADIAILANHFLQKFAQS 347 Query: 383 TGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 V RF EA L + W GN REL + + G I L+ + +I Sbjct: 348 KKKEVTRFTPEAIACMLHY------PWPGNVRELENLIEMLVVMKEDGEIKLEDLPSKIR 401 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 + + Q + + + D+ + + ++ + + +L +++R Sbjct: 402 QFKKETQSFKEYQIP---EEGIDFNDVVYQFEKNILLKALAKTNGVKNRAAKLLNLNR-- 456 Query: 502 KASVNDADRLRKYLARFGLTWEA 524 L + L R ++ E+ Sbjct: 457 -------TTLVEKLKRLNISSES 472 >UniRef50_Q6MMW8 Acetoacetate metabolism regulatory protein atoC n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MMW8_BDEBA Length = 470 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 120/491 (24%), Positives = 202/491 (41%), Gaps = 26/491 (5%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 ++L L L ++ + S PE E E ++V D Sbjct: 3 NKLHTLIVDDEAELRRSVISILKSTMPEIEFTIEEAATGKEA-LDKVKQQQWDLVLMDVK 61 Query: 102 QPEKEDYLIHITTGTHVAQ--ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 PE H + + + I+ E+P P ++ I Sbjct: 62 MPEMNGLEALTAIKEHDPRTFVVLMTAHSNLHDAVVAIKEGAYDYVEKPVQPQQLAEIVR 121 Query: 160 DLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 + S A D ++S I + + I ++ K +L+ G G Sbjct: 122 KSLEARDLISSLAMSNPVFDDDIESEIVGGSSKMKEVFNLIYRL-CKVDTTVLVRGENGT 180 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +AR I + SGAFV +NC + + S LFGH KGAFTGA E + G + Sbjct: 181 GKELVARAIHFNSPRK---SGAFVAINCGAIPENLMESELFGHEKGAFTGAVERKIGKFQ 237 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 AN G LFLDEIGEL D Q LL+ ++E+ F P GS+R+V + ++IA T R+L +++ Sbjct: 238 LANNGTLFLDEIGELRPDMQVKLLRVLQERKFTPVGSNREVKTTTRIIAATNRNLEKMME 297 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWL 398 EG+FREDL+ R+N+ LP LR+R +DIE +++ + G + EA Sbjct: 298 EGEFREDLFYRLNVMPIFLPPLRERADDIEALAGNFIKKFSKQHGRQITAITPEALDMLK 357 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 ++ W GN REL + R S +IT+D + D I + + S Sbjct: 358 SY------RWPGNIRELENIIERSFIVENSHQITVDSLPDSIKLTPKDGADKTASVG--- 408 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + + M+ E +++ + +++ + + L + + ++ Sbjct: 409 YSGPLDFDAFKEEMEKEFIVSALKANNGR---------INQTVAQANIPKNTLLRKIRKY 459 Query: 519 GLTWEAVQDQH 529 G+ + ++ Sbjct: 460 GINVKEYTNEE 470 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 92/423 (21%), Positives = 181/423 (42%), Gaps = 29/423 (6%) Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + L HI T + + + I+ +P E+ ++ + Sbjct: 60 DGLTLLKHIKTISPQTGVIIITAFAEVKTAVQAIKDGAFDYIAKPFTNEELLLVIERFLK 119 Query: 164 YNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + + GI + + + ++I+ VA K+ P+L+ G +G GK Sbjct: 120 FRTLEKEVKYLSELVKKKDEFEGIVSTSSVMKEIFDKIDAVA-KTDVPVLIQGESGTGKE 178 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A I + + + ++++NCA + S LFG+ KGAFTGA E+++G AN Sbjct: 179 LIANAIQKQSLRKEK---PYIKINCAAIPETLFESELFGYEKGAFTGATETKKGKFELAN 235 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +F DEIG++ QA LL+ IE+ Y G + + + I T ++L++L+ K Sbjct: 236 GGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRCIYATSKNLKELIKAEK 295 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFA 401 FREDL+ RIN+ +P L++R+EDI ++ ++ + G ++ + A A L++ Sbjct: 296 FREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQNITISPSAYEALLSY- 354 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 + GN REL ++ R + G I + + +E + L ++ + Sbjct: 355 -----DYPGNVRELKHAIERALLLSKDGVIDIKHLPEEFSPLSSFQKKC--------FIS 401 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + + + +I ++ + +SR+ L + + +G+ Sbjct: 402 NFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKA---------LWEKIKFYGIE 452 Query: 522 WEA 524 Sbjct: 453 PNP 455 >UniRef50_C4XRA9 Transcriptional regulatory protein ZraR n=9 Tax=Proteobacteria RepID=C4XRA9_DESMR Length = 462 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 106/413 (25%), Positives = 169/413 (40%), Gaps = 23/413 (5%) Query: 111 HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASR 170 I + + ++S +P + + + +A Sbjct: 67 LIKEYNPAVPVLIMTAYSSVETAVSALKSGAYDYLTKPLDLDVMRLTVERALDHLRLARE 126 Query: 171 FAEERQQTLDFL-KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 RQ+ + I ++P + I VA + A +L+ G +G GK +A+ + Sbjct: 127 NENLRQKLGPGVVGPEIIGKSPAMRELFSMIAMVA-PTEATVLVTGESGTGKELVAKALH 185 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 G V VNCA L S LFGH KGAFTGA REG +A+ G +FLD Sbjct: 186 AGSPR---AGGPMVAVNCAALNETLLESELFGHEKGAFTGAERRREGRFMAADKGSIFLD 242 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGE+ QA LL+ I+E+ G DR V D +++A T RDL++ V G+FREDLY Sbjct: 243 EIGEIAPSIQAKLLRVIQEREIQRVGGDRPVGVDVRILAATNRDLKKEVEAGRFREDLYY 302 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATW 408 R+N+ ++P LR+R +DI + + R A ++ F A L + W Sbjct: 303 RLNVVAISVPPLRERGQDIPLLAQHFLTRFAEKNRKRIKGFTPAAMDHLL------RCPW 356 Query: 409 RGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENID- 467 GN REL +V R + +T + R + A + + Sbjct: 357 PGNVRELENAVERAVILSVGEYVTERELPLSAMREAGGNGAPGGAGGGAPAPGDMAGLAG 416 Query: 468 -LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 D ++ E ++A R + ++ ++R L K L ++G Sbjct: 417 MALDDVEREVILATLRDTGGNKSEAARVLGITRA---------TLHKKLKKYG 460 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 111/480 (23%), Positives = 198/480 (41%), Gaps = 48/480 (10%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L D +L + + ++V V ++ P + Sbjct: 20 VLGDEGYETLTANSGLEAIQILEGSDVDLVLTDMKMPG-------------------MDG 60 Query: 106 EDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI-IDLDLSRY 164 + + I T + + ++ +P ++ + + L+ Y Sbjct: 61 MELMERIKTRDPDLPVLMMTAYGTVDMGMAAMEKGAYSYIWKPFQNEQLILFVKQALAMY 120 Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 + + + + I ++P + + I KVA + A +L+ G +G GK + Sbjct: 121 RVVQENRLLKNELGDRYSFGNIIGKSPAMVNIFDTIVKVA-PTNATVLIQGESGTGKEMV 179 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 A+ I + +V VNCA L S LFGH KGAFTGA ++G A+GG Sbjct: 180 AKSIHFNSHRKD---APWVAVNCAALAESILESELFGHEKGAFTGAAAMKKGRFELADGG 236 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 LFLDEIGE+ + Q LL+ ++EKTF G + + D +LIA T RDL++ V FR Sbjct: 237 TLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIAATNRDLKKEVENSAFR 296 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA---SLTGDSVRFNTEARRAWLAFA 401 EDL+ R+N+ LP LR+RQ+DI +D+ ++++A S + + + R + +A Sbjct: 297 EDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESRVRKVHPDVHRLFQEYA 356 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL + R S I+++ + E+ R N + A Sbjct: 357 ------WPGNVRELENVIERAIILCNSDAISVNDLPRELTRSVSNTLHMEGIPVDA---- 406 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++ + + ++ + Q+ + + G L + + +FGL Sbjct: 407 --TLYETLSMVEQAMIKRAMLMSDNVQSHAAQILGIGKSG---------LNQKIKKFGLD 455 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 519 bits (1338), Expect = e-146, Method: Composition-based stats. Identities = 105/485 (21%), Positives = 190/485 (39%), Gaps = 33/485 (6%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH--ITT 114 E R + + + V + + E + D P+ + I Sbjct: 10 EANLRKVLAAMLRRDGFDVTVAENGEQGLAEFHKNGADIVVTDLVMPKVGGMEVLGTIRA 69 Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE 174 + I++ +P E++ + ++ N A R Sbjct: 70 ANPDVPVIIITAHGTVDSAVDAIKAGAFDYITKPFDQAELSSVVAKAAKTNESARRSV-- 127 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 + ++ I + + + I+KVA + + +L+ G +G GK +A + Sbjct: 128 --RPDVKARAAIIGDSSTIQEVYKIIDKVA-DTPSTVLITGESGTGKELIATALHGASSR 184 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R + F+++NCA + S LFG+ +GAFTGA S+ G A+ G LFLDEIGE+ Sbjct: 185 RDK---PFIKINCAAIPHTLLESELFGYERGAFTGAVTSKPGRFELADEGTLFLDEIGEI 241 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 + Q LL+AI+E F G + D +L+A T RDL+ + G+FR+DLY R+ + Sbjct: 242 PVEMQVKLLRAIQEGEFERVGGIKTTRVDVRLVAATNRDLQAEIEAGRFRKDLYYRLAVV 301 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFR 413 +LP LR+R+ D+ + VE++ + +A +A W GN R Sbjct: 302 PISLPALRERRSDVPMLARHFVEKYNRRLNKKIEGIADDAMALLQGYA------WPGNIR 355 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD--- 470 EL + R+ FA IT + + + + + ++ A + + L D Sbjct: 356 ELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGANLASAVASIDVPTGEVGLKDIVR 415 Query: 471 ----RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 ++ + ++ + +L +SR+ L+ + FGL Sbjct: 416 MKAAELERDLIVKKLEETGGNVTRAARLLQISRK---------SLQTKMKEFGLRDTTPD 466 Query: 527 DQHSS 531 Q Sbjct: 467 GQEDG 471 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 108/449 (24%), Positives = 188/449 (41%), Gaps = 24/449 (5%) Query: 83 WDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSS 140 + + D P + + + + +++ Sbjct: 37 HALKVLEQEDIDLVISDWRMPGMDGPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNG 96 Query: 141 PPRKKEQPRGPGEVTIIDLDLSRYNA-IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 +P E+ I ++ + + + +P F R+++ Sbjct: 97 AYDYIAKPFDIDELDITVSKALQFRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQA 156 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 ++ V +S A ILL G +G GK +AR I + ++ FV VNCA + S + Sbjct: 157 VDSV-RESNATILLTGESGTGKEMVARAIHKHG---NRADKPFVAVNCAAIPEGLLESEM 212 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA R G + A+ G LFLDE+G++ QA +L+A++E+ P G R+ Sbjct: 213 FGHRKGAFTGAVADRVGRFQQADKGTLFLDEVGDMPLALQAKILRALQERVIEPVGDPRE 272 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 D ++IA T ++L + VA +FREDLY R+N++ LP LR+R EDI + Sbjct: 273 RKVDVRVIAATNKNLLEAVANKEFREDLYYRLNVFPIPLPALRERVEDIALLARHFAHSL 332 Query: 380 ASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 + G + F+ EA +A ++A W GN REL V R AT I + Sbjct: 333 GATAGKRISGFSPEALQAMASYA------WPGNIRELQNCVERATIVATGQVIEEKDLPG 386 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + + ES +A++ ++ ++ +++A +Q+ + AA QL +S Sbjct: 387 YLFGPQAQGTESS-AAISVGPQVPSDLEAALAEVEKAYILAALQQSNGVQAAAAQLIGIS 445 Query: 499 RQGKASVNDADRLRKYLARFGLTWEAVQD 527 + L + G+ + + Sbjct: 446 ER---------SFWYRLKKLGIQVDKIVR 465 >UniRef50_C6E9E0 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=C6E9E0_GEOSM Length = 467 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 109/477 (22%), Positives = 191/477 (40%), Gaps = 34/477 (7%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFETLKR-DIASVSPETEVVSVEIELHNPWDFEE 87 P + + + D + + +++ D EV V ++ P Sbjct: 4 PKILIADDDKKTRDFVAAFLSYKGYQVYQAFDGQDALQKIELHEVQMVITDIMMPRV--- 60 Query: 88 VYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQ 147 +++ + + + + A L+++ E+ Sbjct: 61 ----------------NGLEFIKQLKSIRPDIVTIAYSAFANFEMTANLLKAGAFFYLEK 104 Query: 148 PRGPGEVTIIDLDLSRYNAIASR-FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 P E+ + A+ S+ F + L + I + + E IEKVA Sbjct: 105 PFNLEELETHVKRGLEHQALQSKSFRSKPCIKNRALLNNIIGESEKMLSLFEMIEKVAT- 163 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S + +L+ G +G GK +AR I +L + FV +NCA + + S LFGHVKG+ Sbjct: 164 SDSTVLIQGESGTGKELVARAIHDLSNRSDKN---FVALNCAAIPDELLESELFGHVKGS 220 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA SR G A+ G LFLDEIG++ A+ Q LL+ ++ + P GS R D ++ Sbjct: 221 FTGAVASRIGRFEMADKGTLFLDEIGDMKANLQVKLLRVLQSRELEPVGSTRSKKVDVRI 280 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T ++L +VA +FREDLY R+++ LP LR+R D+ L+ +E+ Sbjct: 281 IAATNQNLDHMVASKEFREDLYYRLSVIPIMLPPLRERGSDVPLLLNSFLEKFNRSKQRK 340 Query: 387 VR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 V+ F+ + + W GN REL V R+ T+G I++ + ++ R Sbjct: 341 VQGFDKQVMEILSNY------DWPGNVRELENLVERLVIIKTTGVISIHDLPEKYRGGRT 394 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 L + + ++ ++ +L ++ R Sbjct: 395 T--TVLHGEPMTLPDDGFCLNSAVEEFENRLILQALEKSGGNKKEAAELLNLKRTTL 449 >UniRef50_A3ER00 Transcriptional regulator, NifA, Fis Family n=3 Tax=Leptospirillum RepID=A3ER00_9BACT Length = 553 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 110/524 (20%), Positives = 197/524 (37%), Gaps = 43/524 (8%) Query: 25 SKWRPTLCLCQQESLVI-DRLELLHDARSRSLFETLKRDIASVSPETEVVSVE------I 77 + L + ++ + + LL + E + E + Sbjct: 29 GALKRILEIMDEKLGLHRSSILLLENDSDELRTEIAHGLSEEEIRKGRFKEGEGITGAVL 88 Query: 78 ELHNPWDFEEVYACLHDFARGYEF--QPEKEDYLIHITTGTHVAQICWFLLAEARYLPAR 135 + +P ++ R + + T A+ L A+ P Sbjct: 89 KTGDPIVVPDISREPRFLNRTGSRSERASRGKLAFLAVPLTFQARKVGVLSADCTIEPGS 148 Query: 136 LIQSSPPRKKEQPRGP--GEVTIIDLDLSRYNAIASR-FAEERQQTLDFLKSGIATRNPH 192 R V + + + R E + G R+ Sbjct: 149 GNLDEELRVLTTISSIIAQAVILRKQFVEERKKLEERALRLEHHLKDRYSIEGWIGRSRI 208 Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 ++ E + VA KSRA +L+ G +G GK +A+ I + FV++NCA + Sbjct: 209 MQQISESVHLVA-KSRATVLIMGESGTGKEVVAKAIHFNSPRNRR---PFVQINCAAIPE 264 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFGH KGAFTGA SR G A+ G LFLDE+GE+ Q LL+ ++E+ Sbjct: 265 SLLESELFGHEKGAFTGAHVSRPGKFEQAHEGTLFLDEVGEISPAVQVKLLRVLQERVVE 324 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 G + + D ++IA T R+L + + + +FREDLY R+N+ LP LRQR+EDI + Sbjct: 325 RVGGTKTIPVDVRIIAATNRNLEEAIRKNQFREDLYYRLNVVPIYLPPLRQRKEDIPLLV 384 Query: 373 DYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 ++ + R G S+ + EA A + + W GN REL ++ R+ + I Sbjct: 385 NHFLGRFNQENGRSMTISPEAISALI------EHDWPGNVRELENTMERLVVMTQADSID 438 Query: 433 LDVVEDEIN------------RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAI 480 + V + + ++S ++L G + ++ ++ + Sbjct: 439 ITDVRRTLALFPSTLPHRREVEEKPASRDSGKENGSSLKGESLLLPEAVSELERAKILDV 498 Query: 481 CRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + + L ++ +L + ++G+ Sbjct: 499 LDRTGWIKTRAAALLGIT---------PRQLGYRMMKYGIDPSP 533 >UniRef50_A5G9U3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A5G9U3_GEOUR Length = 466 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 113/466 (24%), Positives = 184/466 (39%), Gaps = 23/466 (4%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE 100 +D +L + RD + + V E++ Sbjct: 1 MDSARILIADDDKK-----TRDFVAAFLSYKGYQVFQASDGQDALEKIELNDVHMVITDI 55 Query: 101 FQPEKEDYLIHITTGTHVAQICWFL--LAEARYLPARLIQSSPPRKKEQPRGPGEVTIID 158 P +I + A L+++ E+P E+ Sbjct: 56 MMPRVNGLEFIKKLKAMRPEIVTIAYSAFANFEMTANLLKAGAFFYLEKPFNLEELETHV 115 Query: 159 LDLSRYNAIASRFAEERQ-QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + A+ + + + L + I + + E IEKVA S + +L+ G + Sbjct: 116 KRGLEHQALQRQSFKSKPCIKNRSLLNNIIGESDRMLSLFEMIEKVAG-SDSTVLIQGES 174 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR I +L ++ + FV VNCA + D S LFGHVKG+FTGA +R G Sbjct: 175 GTGKELVARAIHDLS---NRATKNFVPVNCAAIPDDLLESELFGHVKGSFTGAVATRIGR 231 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+ G LFLDEIG++ + Q LL+ ++ K P G+ R D ++IA T ++L L Sbjct: 232 FEMADRGTLFLDEIGDMKPNLQVKLLRVLQNKELEPVGAARTKKVDVRIIAATNQNLEHL 291 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 VA FREDLY R+++ TLP LR+R+ DI L+ +E+ V+ F+ Sbjct: 292 VASKIFREDLYYRLSVIPITLPPLRERKTDIPLLLNNFLEKFNRNKQRKVQSFDKNTMDI 351 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 F W GN REL V R+ SG IT + ++ ++ + R Sbjct: 352 LCNF------DWPGNVRELENLVERLVILKGSGTITFQDLPEKYRGIKSAPKSER----L 401 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 L + + + ++ + L ++ R Sbjct: 402 TLPDTGFCLNSAVEDFENQLILQALEKTGGNKKEAATLLNLKRTTL 447 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 112/483 (23%), Positives = 175/483 (36%), Gaps = 36/483 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L ++ L + + E + + E V DF P Sbjct: 11 VLVVDDEENMRHMLAAMLTREGYQVETAA-----NGAQALEMVAKQPFDFILCDIKMPRM 65 Query: 106 EDYLI--HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + H T A + ++ +P EV + S Sbjct: 66 DGLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLALKKASE 125 Query: 164 YNAIASRFAEERQQ----TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 + RQQ + I ++ + + I KVA +L+ G +G Sbjct: 126 RERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVAAH-DTTVLVTGESGT 184 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +AR + + VNC + + S LFGHVKGAFTGA +++ GL Sbjct: 185 GKELVARSLHFNSPRAPNA---LIPVNCGGIPENLLESELFGHVKGAFTGADKNKTGLCE 241 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A+ G LFLDEIGEL A Q LL+ ++++ P G+ + D +++A T R+L VA Sbjct: 242 IAHKGTLFLDEIGELPASLQVKLLRLLQDREIRPVGASATRTIDIRIVAATARNLEADVA 301 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWL 398 EG FREDL+ R+N+ LP LR RQEDI ++ V+ ++ A L Sbjct: 302 EGVFREDLFYRLNVLHIHLPPLRDRQEDIPLLIETFVQEFNKKLDKTITGLAPAALSRLL 361 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 A TW GN REL + R A IT D + + Sbjct: 362 A------HTWPGNVRELENLIERAVVLAEGDTITPDDLPPGFGTDSAGGPGDALAGFDGY 415 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 A+ I + + + +L ++S L + + Sbjct: 416 SIKAAQKI-----FEKRLIEKALAKTGGNRTRTSKLLEIS---------HPSLLAKMKEY 461 Query: 519 GLT 521 G+ Sbjct: 462 GIE 464 >UniRef50_Q1INE5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Acidobacteria RepID=Q1INE5_ACIBL Length = 459 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 111/484 (22%), Positives = 190/484 (39%), Gaps = 38/484 (7%) Query: 39 LVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARG 98 + + + +LL S+ ++L + E V E V +D A Sbjct: 1 MSVSKGKLLVVDDELSVRDSLAKWFREEGYEVTVGESANEA-----LSRVAEQTYDLALL 55 Query: 99 YEFQPEKEDYLIHITTGTHVAQ-ICWFLLAEARYLPARL-IQSSPPRKKEQPRGPGEVTI 156 + + V I + A A +++ +P P E Sbjct: 56 DIKMRGTDGVELQRKLHELVPGLIVIMMTGYASVETAVATLRNGAYDYITKPLDPEETAH 115 Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 + + ++Q + + R+ ++ + IE VA + A +L+ G Sbjct: 116 LVSKALAHKRTEQENVRLKEQIEEHAHVDLVWRSDAMKKINDAIETVA-PTDATVLITGE 174 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK +AR I L R V V+C L S LFGH KGAFTGA+ ++G Sbjct: 175 SGTGKEVVARAIHALSTRR---FHPMVPVHCGALTETLLESELFGHEKGAFTGAQYRKKG 231 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A GG +FLDEIG++ Q LL+ ++E+ G ++ + DF+++A T +DL + Sbjct: 232 KFEVAEGGTVFLDEIGDISLKTQTDLLRVLQEREIVRVGGNQPIKVDFRIVAATNKDLEK 291 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARR 395 L+ EG FR DL+ R+N++ LP LR R+EDI +++ ++ A V R + A Sbjct: 292 LIEEGHFRPDLFYRLNVFRIELPPLRDRREDIPLLVNHFTKKFAEQMNKRVTRVASPAMN 351 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL 455 Q W GN REL +V R A + ++ +A Sbjct: 352 ML------QQYPWPGNVRELENAVERAMVVAQEPELRETDFVLKVK-----------AAA 394 Query: 456 TALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 T + ++ EH++ + + ++ D+ R L + Sbjct: 395 TMSSTNGTGTPKTLEDIEKEHILHVLDETNWNQTRAAEMLDIDRV---------TLHHKI 445 Query: 516 ARFG 519 R+G Sbjct: 446 KRYG 449 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 103/499 (20%), Positives = 188/499 (37%), Gaps = 58/499 (11%) Query: 31 LCLCQQESLVIDRL-ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVY 89 + E + + +L T + V T + + ++ P Sbjct: 4 ILYIDDEISALKAISAILRKEGYTVFTSTTAEEGMEVLKTTTIECILLDYRLP---GMDG 60 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 L + + E ++ +P Sbjct: 61 IDLLRWLKHCEMS----------------IPTVMLTAYGTIEKAVEAMKLGAYHYLIKPV 104 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 + + + + + ++ I ++ + ++ VA S A Sbjct: 105 DTELLLNVIKEAIEKSKGIQKLE-----KIETPFPEIIGKSKTIQEIFYIMQMVAE-SNA 158 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G +G GK +AR I + + S F+ V+C T+ + S LFGH KGAFTG Sbjct: 159 NVLITGESGTGKELVARAIHKNSLRK---SKPFIIVDCTTIPENLLESELFGHEKGAFTG 215 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A E + GL+ AN G +FLDEIGEL Q LL+ ++EK GS +++ D ++I+ Sbjct: 216 ATERKTGLIELANEGTVFLDEIGELPMLLQKKLLRFLQEKEIQRIGSTQRIKVDVRVISA 275 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-R 388 T +DL + + EG FREDLY R+N+ LP LR+R+EDI +++ + + + + + Sbjct: 276 TNKDLEKAIKEGSFREDLYWRLNVVRINLPPLRERKEDIPLLVNHFLNKFSKENNKPIPQ 335 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 E A + + W GN REL+ + R + SG I++ + I Sbjct: 336 LEPEVMNALINYY------WPGNIRELANVIERAVVLSPSGLISIKHLPRRIQE------ 383 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 EN ++ ++ ++ +SR+ Sbjct: 384 -------NTGWTIIKENTFNLLEVEKALILKALNSTGWNQTKAAEILGISRK-------- 428 Query: 509 DRLRKYLARFGLTWEAVQD 527 +LR + G ++ ++ Sbjct: 429 -QLRTKMKHHGFLTQSEEE 446 >UniRef50_B3DZ60 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=4 Tax=Verrucomicrobia RepID=B3DZ60_METI4 Length = 464 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 119/496 (23%), Positives = 198/496 (39%), Gaps = 48/496 (9%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEV 88 P L + + E L + + + ++ + V ++ +E Sbjct: 8 PKLLIIEDEKRTRMGLVMALGEEFDTYEASDLSSAMAILENEPIDIVLADIRLG---KES 64 Query: 89 YACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPA-RLIQSSPPRKKEQ 147 + + F P C F+ A A I+ + Sbjct: 65 GFEILRKVKSLPFPP-----------------ACLFMTAYGSVENAVEAIKMGAYDYIPK 107 Query: 148 PRGPGEVTIIDLDLSRYNAIA-SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 P ++ I + + + +RQ + I + + E+I++VA Sbjct: 108 PLDLEKLEITLKRIYQSRKVEVENLQLKRQLNWKYGLEKIIGNSAAMKAVFEKIKQVAS- 166 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S+A +LL G +G GK +A I +L ++ FV V+CA L S LFGH KGA Sbjct: 167 SKATVLLEGESGTGKELVAHAIHQLSPRKN---FPFVVVHCAALSPQLLESELFGHEKGA 223 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E R G A G LFLDEIGE+ Q LL+A+ EKT GS++ V+ D ++ Sbjct: 224 FTGAIERRIGRFEEAARGTLFLDEIGEIDLPTQVKLLRALGEKTIQRVGSNKVVAVDVRV 283 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T ++L ++V EGKFREDL+ R+N+ +P LR+R+EDI + A+ G Sbjct: 284 IAATNKNLEKMVEEGKFREDLFFRLNVVRIVMPPLRERKEDIPLLAQAFLAEFAAENGKK 343 Query: 387 V-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + R + EA + L + W GN REL ++ I + + I R Sbjct: 344 IDRLSPEAMKILLEY------DWPGNVRELKMAIEHGVVLCQGEEIRPRDLPERIRIPRP 397 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 + + + + ++ R + + + +SR+ Sbjct: 398 LLSAPI------SVESSEPDCFNLKEAEKRLILHALRVCQGKKTSAAKKLGISRK----- 446 Query: 506 NDADRLRKYLARFGLT 521 L++ + +F LT Sbjct: 447 ----TLQRKIKQFELT 458 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 101/490 (20%), Positives = 191/490 (38%), Gaps = 28/490 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L + + R + ++ +V+ ++V +D P+ Sbjct: 4 RILVVDDEEIVIRSCVRILND-----DLYTVDSAPGGFEALKKVDETAYDILILDVMMPK 58 Query: 105 KEDYLI--HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + H+ + + ++ +P P E+ ++ Sbjct: 59 MDGLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPFDPDELKLVVNRAL 118 Query: 163 RYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + + + + + + I +P + I K A + + +L+ G +G GK Sbjct: 119 ERRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCA-PTNSTVLITGESGTGK 177 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I + Q FV V+C TL + S LFGH KG+FTGA ++ G+ A Sbjct: 178 EMIARAIHYNSLRKDQ---PFVTVDCNTLSENLLESELFGHTKGSFTGAVANKRGMFDVA 234 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 N G LFLDE G + QA LL+ I+E+ F P G+ ++ +LI T +DL+ +VAEG Sbjct: 235 NNGTLFLDEFGNIPLSTQAKLLRVIQEREFRPVGTTTNQKTNVRLITATNKDLKAMVAEG 294 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAF 400 FREDLY RIN++ P LR+R++DI + ++ S G V + A + + Sbjct: 295 TFREDLYYRINVFPIHSPALRERRDDIPALAFHFLKIFCSELGKPVSEISEGAMSLLMNY 354 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN REL ++ R ++ G I + I+ + ++ Sbjct: 355 G------WPGNVRELENTMQRAVILSSDGIIRQAHLASIIDNSPRLDLDVPRTSDELKRI 408 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + ++ V ++ S + + R ++ + ++ + Sbjct: 409 KKIAREKSVEEVEKLFVQETLKRNASNVTRSAEETGMQRTNFQAL---------MKKYNI 459 Query: 521 TWEAVQDQHS 530 + Sbjct: 460 RVRDTEYDDG 469 >UniRef50_Q1Q1B9 Strong similarity to sigma 54 response regulator protein n=3 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1B9_9BACT Length = 469 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 100/485 (20%), Positives = 185/485 (38%), Gaps = 32/485 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L ++ E+L E VS VY D + Sbjct: 6 KILVVEDQDAMRESLLIAFKDEGYHVECVSSGEGAIKKLSDGNVY----DLVVTDLKMKK 61 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + T ++ A + I+ +P E+ + + Sbjct: 62 VNGLEVLNAVKTENPATEVIVITAYGAISTAVQAIREGAYDYVTKPFRYQEMLKVAKNAL 121 Query: 163 RYNAIASRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + R E + + GI + +++ V ++ + +L+ G +G GK Sbjct: 122 EKKELKERLKYLEGEVREKYKLEGIIGNSAVMVEVLKVTADV-SRTESTVLITGESGTGK 180 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I FV +NC L + S LFGH KG+FTGA + + GL A Sbjct: 181 ELIARAIHYNGPRS---GYPFVVINCGALPENLQESELFGHAKGSFTGAVKEKVGLFHHA 237 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 + G +FLDEIGE A Q LL+ +++ G ++ + D ++IA T +L + V +G Sbjct: 238 HKGTIFLDEIGETSASTQVKLLRFLQDGEIRQVGGNKSIHVDVRIIAATNENLERAVNQG 297 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAF 400 +FR+DL+ RIN+ LP L++R+EDI ++Y +E + R F+ A L + Sbjct: 298 RFRKDLFYRINVIRIHLPQLKERKEDIPLLVNYFLELYTDKLKKDKRVFSGSAMAVLLNY 357 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN REL V R + + I ++ + L + S + Sbjct: 358 ------DWPGNIRELQNIVERAVALSKNQVIGVEALP-----LPTGGFVAHNSNPERDVT 406 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ ++ + ++ + Q+ +S L + + ++ + Sbjct: 407 VKSSIVETLSEQEKNAIVEAMNKYGGNQTKVSQVLGIS---------TTTLWRKIKKYKI 457 Query: 521 TWEAV 525 + Sbjct: 458 KPQHE 462 >UniRef50_Q027A1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q027A1_SOLUE Length = 450 Score = 513 bits (1321), Expect = e-144, Method: Composition-based stats. Identities = 118/494 (23%), Positives = 200/494 (40%), Gaps = 52/494 (10%) Query: 31 LCLCQQESLVIDRLEL-LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVY 89 + + + E + +EL L A + + ++V +++L N Sbjct: 5 ILVVEDEEKLRRVIELQLLSAGFDVDKAASAEEGLKIVDRADMVLTDLKLPNM------- 57 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 + +++L I + +++ +P Sbjct: 58 --------------DGQEFLSLIRRQNSHVPVVMMTAFGNVETAVEAMKAGATDFLLKPF 103 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQT-LDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 + + A+ E + + I R+P + IE+V SR Sbjct: 104 SLDHLMQVVDKALEVRALREENRELKAALGRRYEFDNIVGRSPAMQEIFAAIERV-GPSR 162 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 A +LL G +G GK +AR I + + V++NC + + S LFG+ KGAFT Sbjct: 163 ATVLLTGESGVGKDLIARAIHFHSPRKDR---PLVKINCTAIPENLMESELFGYEKGAFT 219 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA+ ++ G A+ G +FLDEIG++ A Q LL+ ++E+ F GS+ D +L+A Sbjct: 220 GAQTTKPGKFEQADTGTVFLDEIGDVPAAIQVKLLRVLQEREFERLGSNVTRHIDVRLVA 279 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR 388 T +DLR + +G FREDLY R+N+ +P LR+R+ DI ++ V + A TG V Sbjct: 280 ATNQDLRAALEQGTFREDLYYRLNVVPLNIPPLRERKVDIPFLANHFVHKLAPDTGCQVE 339 Query: 389 FNTEA-RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 T+A +A+ W GN REL + R AT ++ D ++ E Sbjct: 340 SITDAGMEKLMAY------HWPGNVRELENVIERSLVMATGTQLDADDIKLE-------- 385 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 RP A E + D+ + E + R+A + +L ++R Sbjct: 386 SAPRPRAQGNDNHFLPEGLS-LDQYEQEIIREALRRADGNKSQAARLLGLTRNA------ 438 Query: 508 ADRLRKYLARFGLT 521 LR L + GL Sbjct: 439 ---LRYRLTQMGLE 449 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 101/430 (23%), Positives = 181/430 (42%), Gaps = 31/430 (7%) Query: 95 FARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYL-PARLIQSSPPRKKEQPRGPGE 153 + + +++ + A I+ +P Sbjct: 49 ILTDLKLGNQNGIEILNSLPEEPFRPAVIVITAFGTISSAVNAIKQGAFDYLTKPLDKEV 108 Query: 154 VTIIDLDLS-RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 + + R N I ++ F GI ++ ++++ ++K A + A +L Sbjct: 109 LLVTIRKAEERMNLIKENLMLRKELYEKFKMDGIIGKSRKMLQVLDIVKK-ATPTNATVL 167 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 + G +G GK +AR I + + F+ +NCA + S LFG+ GAFTGA Sbjct: 168 IYGESGTGKELIARAIHYNSPRKDK---PFIAINCAAIPDTLIESELFGYEPGAFTGANT 224 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 + GL+ SA+ G LFLDEI E+ Q+ LL+ +++K GS D ++IA T + Sbjct: 225 RKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDVRIIAATNK 284 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTE 392 +L + V + KFREDLY R+ + T +P LR+R+EDI + + +E+++ G V E Sbjct: 285 NLSEQVEKNKFREDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFGKRVNGIEE 344 Query: 393 -ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 A A L + +W GN REL + + R +IT + ++DE+ + Sbjct: 345 KALEALLNY------SWPGNIRELESVIERAIIICEKDKITFNDIQDELRVITPK----- 393 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 + ++ ++ E + ++ + A +L +S D Sbjct: 394 ----NLFDIDIPDEGINYEELEKELIKKALIKSNFVIAKAARLLGMS---------YDTF 440 Query: 512 RKYLARFGLT 521 L +FGL+ Sbjct: 441 WYRLKKFGLS 450 >UniRef50_Q9APD9 Transcriptional regulatory protein zraR n=89 Tax=Proteobacteria RepID=ZRAR_KLEOX Length = 443 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 112/427 (26%), Positives = 181/427 (42%), Gaps = 28/427 (6%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPP 142 E+V + D E + I T + + ++S Sbjct: 42 LEKVREKVFDLVLCDIRMAEMDGIETLKEIKTFNPSIPVLIMTAYSSVDTAVEALKSGAL 101 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 +P ++ + + + R +E + G+ +P ++ I Sbjct: 102 DYLIKPLDFDKLQLTLSEALAHT----RLSESPVTETPAAQFGMVGDSPAMRALLNNITL 157 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA S A +L++G +G GK +AR + + V +NCA L S LFGH Sbjct: 158 VA-PSDATVLIHGESGTGKELVARALHASSARSRR---PLVILNCAALNESLLESELFGH 213 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA + REG A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S Sbjct: 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSV 273 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D +LIA T RDL + V+ G+FR+DLY R+N+ T +P LR R+EDI P Y ++R+A Sbjct: 274 DVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVTIDMPPLRHRREDIPPLARYFLQRYAER 333 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 +V+ F +A + +A W GN REL +V R T I+ + I Sbjct: 334 NRKAVQGFTPQAMDLLIHYA------WPGNIRELENAVERAVVLLTGEYISERELPLAIT 387 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 A ++I ++ E ++A + + ++R+ Sbjct: 388 GTP-----------VADAPHGDDSIQPLVEVEKEAILAALERTGGNKTEAARRLGITRKT 436 Query: 502 KASVNDA 508 + Sbjct: 437 LLAKLSR 443 >UniRef50_Q1Q0T6 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q0T6_9BACT Length = 472 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 105/482 (21%), Positives = 187/482 (38%), Gaps = 29/482 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 L+ D R ++R + + E + V V + P Sbjct: 14 VLIADDEER-----MRRVLTMIFEEMKDVKVVAGNSFEDVLRYLDKERFHLLITDLKVPG 68 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + I + +++ P + + Sbjct: 69 SNSIDFIRAVKNKVADIPIIVLTAYGSVGFAIDIMKEGVFDYLVAPFDNDILELAVKRAL 128 Query: 163 RYNAIASRFAEERQQTL-DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + +++ R+ + I +P + + +V ++ + +L+ G +G GK Sbjct: 129 KVSSLTIENKNLRKALELQYNFGNIIGNSPSVVETLRLVGEV-TRTDSTVLVTGESGTGK 187 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 ++R I + G FV +NCA + + S LFG+ KGAFTGA ++++G A Sbjct: 188 ELVSRAIHYNS---DRKCGPFVALNCAAIPENLLESELFGYEKGAFTGAEKTKKGRFELA 244 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 GG FLDEI E+ A QA +L+ IE K G + D ++I T RDL Q+V EG Sbjct: 245 AGGTFFLDEISEMSAAVQAKVLRIIESKELERLGGTDTIKVDVRIICATNRDLVQMVKEG 304 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAF 400 KFR+DLY RI+++ LP LR+R DI P + V ++ G + ++E + + Sbjct: 305 KFRDDLYYRISVFPIMLPALRERSGDIIPLSKHFVNHFSAKMGKTPIVLSSEVEKILI-- 362 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ-ESRPSALTALL 459 + W GN REL + R +G I + + I + S ++ Sbjct: 363 ----KHKWEGNIRELQNIIERAVILCKNGVIRTEHLPTSIVHGYTPPELNENISQNNSVN 418 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 N D ++ + V ++K+ +L ++R R L ++G Sbjct: 419 FDIPPNGLSLDDLEKQLVAKALERSKNNITKAAKLLGLTR---------GTFRYRLQKYG 469 Query: 520 LT 521 ++ Sbjct: 470 IS 471 >UniRef50_C0Q9L2 Sigma-54 dependent transcriptional regulator n=4 Tax=Deltaproteobacteria RepID=C0Q9L2_DESAH Length = 503 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 128/526 (24%), Positives = 222/526 (42%), Gaps = 33/526 (6%) Query: 3 KTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRD 62 K V ++G+ A +G++ + S D + L+ D + K+ Sbjct: 4 KNVLTCWIGSADLNACKGNEGAGSGPVGQAV---ASRTYDEVCLISDWKPEK-TNAYKKW 59 Query: 63 IASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKE-DYLIHITTGTHVAQI 121 I + V +L P F E+Y + + K+ D HI+ GT Sbjct: 60 IETAG-NIPVRLYPKKLSGPTVFSEIYESVVKVVTDILDRHGKDTDLTFHISPGTSQMAA 118 Query: 122 CWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV-TIIDLDLSRYNAIASRFAEERQQTLD 180 W +L++ + A LI+SS + P E+ +L R Sbjct: 119 VWIILSKTLFPNAELIESSIEQGVNTVSFPFELSAEFIPNLLRPADRRLELLSRGLPPES 178 Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 S I ++P R+I + + VA++S P+L+ G +G GK AR I + + Sbjct: 179 PEFSQIIHKSPIMQRVIAKAQHVAVRS-VPVLIEGESGTGKELFARAIHNASPRKDK--- 234 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 F+ VNC + D S LFGHVKGAFTGA ++++G A+ G LFLDEIGEL Q Sbjct: 235 PFITVNCGAIPADLVESQLFGHVKGAFTGAEKAQKGYFEEADKGSLFLDEIGELPLLSQV 294 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+ ++E G+ V D ++IA T R L + EG+FR DL+ R+ + +P Sbjct: 295 KLLRTLQEGEVVRVGTATPVKIDVRIIAATNRSLIDEIHEGRFRSDLFYRLAVAILKIPP 354 Query: 361 LRQRQEDIEPNLDYEVERHASLTG-----DSVRFNTEARRAWLAFATSPQATWRGNFREL 415 LR+R D+ +D+ V + + + + + +A+ Q +W GN REL Sbjct: 355 LRERSGDLSFLVDHFVAQVNTDSKNEPGYKDKKISPDAKNLM------FQHSWPGNVREL 408 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 ++ R A ++ I + +ED + L + L +G + + D+ + + Sbjct: 409 LNTIQRAAIWSFDSTINREDIEDALIPLGTSNPS---DILNRPVGGDFKIEDMMEVVAKH 465 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 ++ ++A +L +S L ++ ++ + Sbjct: 466 YIEKALKEANGKKGKAAELVGLS--------SYQTLGNWMKKYNIN 503 >UniRef50_Q1D1F9 DNA-binding reponse regulator HsfA n=3 Tax=Myxococcus RepID=Q1D1F9_MYXXD Length = 485 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 106/485 (21%), Positives = 196/485 (40%), Gaps = 44/485 (9%) Query: 50 ARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYL 109 ++ + ++ A+ P +VV ++I++ N + + Sbjct: 31 HPVVAIDDAVEGLAAAKDPTIDVVVLDIKMPNLSGMDLLRG------------------- 71 Query: 110 IHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG-PGEVTIIDLDLSRYNAIA 168 I ++ +++ +P EV++ + A+ Sbjct: 72 --IKADRPDVEVIMMTAFATVETAVEAVKAGAYDYLTKPFENIDEVSLTVAKAAERKALK 129 Query: 169 SRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 R E T+ + ++ + + +E V+ + A +L+ G +G GK +AR Sbjct: 130 DRTRALEEALTVRSQFEDLIGQSTQMRSVFKLVETVSHST-ATVLIQGESGTGKELVARA 188 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I + FV VNC+ L S LFGHVKG+FTGA +++GL +A+GG +F Sbjct: 189 IHY---RSARKDKPFVAVNCSALTETLLESELFGHVKGSFTGATGNKKGLFEAADGGTIF 245 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIG++ Q LL+ ++E G++ V D ++IA T DL + +GKFREDL Sbjct: 246 LDEIGDVPPATQVRLLRVLQEGEVKRVGANEPVKVDVRVIAATHVDLSRAKEQGKFREDL 305 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQA 406 + R+N+ T LP LR R ED+ + ++ +AS V + A A Sbjct: 306 FYRLNVITIDLPPLRDRPEDVPLLAHHFLKLYASKADKKVTGISPRAMEAL------TCN 359 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL + R + I ++ + +L L A+A+ + Sbjct: 360 RWTGNVRELENVIERAVVLTGNEVIDVEDLPPGFQSAPQPDSTVEVFSLAHLPYAQAKRL 419 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + ++ A+ + ++ + V R R+ L ++ + +++ Sbjct: 420 -AMRAFERRYLSALLEKNNQNVSSAARAAGVDRSN---------FRRLLKQYEVAGRSMK 469 Query: 527 DQHSS 531 + S Sbjct: 470 PRVVS 474 >UniRef50_A6M003 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Bacteria RepID=A6M003_CLOB8 Length = 472 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 108/478 (22%), Positives = 184/478 (38%), Gaps = 27/478 (5%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 + + +L SL L+ + V E + V E +D A Sbjct: 13 ESVRVLVADDELSLRMVLQTALNKVGYEVDTVKNGKEALCMA-----QENHYDVAILDIR 67 Query: 102 QPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 PE + I I + ++ +P EV II Sbjct: 68 MPEVDGLQAFYEIHKIKPNLPIILMTAFGSSETAVNAMKHGAYDYILKPFNLDEVKIIVS 127 Query: 160 DLSRYNAIASRFAEERQQTLDFL-----KSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 R + Q+ + I + + + I +VA S+A +LL Sbjct: 128 RAIRMQQLTKEVVYLTQEVQEMGMTAMTPGKIVGESSKIQEVYKIIGRVA-NSKATVLLT 186 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ I R + F++VNC ++ S +FGH KGAFT A + Sbjct: 187 GESGTGKGMVAKAIHYASDRREK---PFIQVNCGSIPEGLLESEIFGHEKGAFTSAFFQK 243 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G A GG LFLDEI E+ + Q LL+ ++EK F G + ++ ++IA T RDL Sbjct: 244 PGKFELAEGGTLFLDEIAEMSPNLQVKLLRVLQEKEFERVGGTKTFHTNVRIIAATNRDL 303 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEA 393 + ++E FR+DLY R+N+ + LP L +R EDI DY ++R + G + + F E Sbjct: 304 NKEISEKSFRKDLYYRLNVVSICLPPLCERGEDIVLLADYFLKRFSVEVGRNGMFFAPEV 363 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 + + +W GN REL +V + + I + + I + Sbjct: 364 LDIFRNY------SWPGNIRELENAVEHAIIMSNTRVILPENLPLSIKVEDVEADGTIIL 417 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 + ++ ++ H+ + +L +SR+ + + + Sbjct: 418 GDDSFKP----LREVLLEVEKRHISEAIERTGGNRTQAAKLLQISRRALLYKINENNI 471 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 113/487 (23%), Positives = 193/487 (39%), Gaps = 37/487 (7%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 + +L SL L+ ++ E V P Sbjct: 9 VRVLIVDDDVSLRRVLEYNLQEEGYE-----VLTAGSGEEGLRLFEDGAPTLVVTDLKMP 63 Query: 104 EKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + + + A +++ +P + + Sbjct: 64 GMGGFQLLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNREALKLTVRKA 123 Query: 162 SRYNAI-ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + + + I +P + I++VA + A +L+ G +G G Sbjct: 124 LDMQGLSRENRRLREELSEREEFRSIIGISPPMEEVFRVIDRVA-DTDATVLITGESGTG 182 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I R + FV +NCA + D S LFGHVKGAFTGA + +EG R Sbjct: 183 KELVARAIHNRSSRR---AAPFVAINCAAIPRDLLESELFGHVKGAFTGAVQDKEGKFRQ 239 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A G LFLDE+GEL + Q+ LL+A++EK P G + D +++A T DL + +AE Sbjct: 240 AEAGTLFLDEVGELPVELQSKLLRALQEKEVQPVGGAHTIKLDVRVVAATNADLEEAIAE 299 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF 400 G+FREDL+ R+++ LP LR+R+EDI + + +H G SV F+ E A+ Sbjct: 300 GRFREDLFYRLSVIPVHLPPLRERKEDIPLLVRHFAAKHG---GASVTFSPEILAVMAAY 356 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN REL +V R+ + I D + +++ R R +E R L Sbjct: 357 G------WPGNVRELENTVERILIMRNADTIHPDDLPEKVRRGRSPQRECRVINLP---- 406 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + ++++ E V+ + ++ + + R L + ++ + Sbjct: 407 ---DEGYSLEQLEREIVVEALERNNWNQSSAARFLRIPR---------HTLIYRMEKYSI 454 Query: 521 TWEAVQD 527 T + Sbjct: 455 TTPERKK 461 >UniRef50_C1SGB7 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGB7_9BACT Length = 473 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 116/498 (23%), Positives = 192/498 (38%), Gaps = 50/498 (10%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L ++ E + + + VSVEI FE+ +D P Sbjct: 7 KILIVDDDDNMREAMLETVRRMG-----VSVEIATDGQEGFEKASKNAYDLIVSDMRMPN 61 Query: 105 KEDYLIH---ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + + G +C+ ++ +P P + + + Sbjct: 62 VDGMTMMNMIQSAGIT-TPLCFVTAFGTVNNAVDALKLGAYDYILKPFAPEVIEELVRRV 120 Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 A ++ R+ ++ VA S A +L+ G +G GK Sbjct: 121 LEIEETAPAVKRKKNTA--------IFRSAFMAQLFSLARDVAA-SEATVLITGESGTGK 171 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 AR I E SGAFV VNCA L + S LFG+ KGAFTGA + G A Sbjct: 172 EVFARYIHENSNRS---SGAFVAVNCAALPENLMESELFGYEKGAFTGAVNRKPGKFELA 228 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG + LDE+GE+ QA LL+ ++EK G + + +++A T + L++ V EG Sbjct: 229 DGGTILLDELGEIPLHLQAKLLRVLQEKEVERLGGTKPFKINVRILATTNKVLKKEVDEG 288 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAF 400 FREDLY R+N+ + LP LR+R+EDI + E++A + G S + +A +A L + Sbjct: 289 NFREDLYYRLNVISIELPPLRERKEDIMELATFFAEKYAQINGKGSCKMTDDAVKALLDY 348 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVV----------EDEINRLRYNWQES 450 W GN REL ++ R G I+ + + L + Sbjct: 349 ------DWPGNVRELEHTIERAVVLCRDGVISERNLFLHGITINQFMTDKQELAAADSYT 402 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + A + M+ E +I ++ + ++ Sbjct: 403 GCETTEDSVSAGIDFAGTIAEMERELIIKTLKETGGNRTKAADMLGIT---------VRT 453 Query: 511 LRKYLARF---GLTWEAV 525 LR L + GL E + Sbjct: 454 LRNKLNEYKENGLNIEDI 471 >UniRef50_Q1D4K8 Sigma-54 dependent DNA-binding response regulator n=3 Tax=Myxococcus RepID=Q1D4K8_MYXXD Length = 471 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 102/492 (20%), Positives = 190/492 (38%), Gaps = 52/492 (10%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKR-DIASVSPETEVVSVEIELHNPWDFEEVY 89 + + E + + + + E + + E V ++ P Sbjct: 6 ILVVDDEDNARRAIATILNEEGYEVAEAANGAEALARIGEFSPAVVLTDVRMP------- 58 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 Q + L A + ++S +P Sbjct: 59 ------------QMDGLTLLKTAREQGSDATFVMMTAFASVETAVEAMKSGADNFLLKPL 106 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDF--LKSGIATRNPHFNRMIEQIEKVAIKS 207 +V + + ++ R Q I +P + + I + A + Sbjct: 107 DADQVLVTLGKVLEKRSLRQEAEALRDQVRSRVRRFHDIIGESPQLQGIYDVIRRAAG-T 165 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 RA +L+ G +G GK +A+ + + + + F+ V+CA L + S LFGH KG+F Sbjct: 166 RATVLILGESGTGKELIAQALHQESPRKDK---PFIRVHCAALSENLLESELFGHEKGSF 222 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA +EG A+GG LFLDEIGE+ Q LL+ ++++ F G + + D +++ Sbjct: 223 TGALARKEGRFELADGGTLFLDEIGEISPAVQVKLLRVLQQREFERVGGTQTLKVDVRIV 282 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T RDL V G+FREDLY R+N+ + TLP LR R+ D+ +++ +E+++ G V Sbjct: 283 AATHRDLVAEVKAGRFREDLYYRLNVVSVTLPPLRDRKSDVPALVNHFLEKYSDSYGKQV 342 Query: 388 R-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 R +A L+ W GN REL ++ R A ++ D + + R + Sbjct: 343 RGLAPGTLQALLS------HDWPGNIRELENAIERAVVLAQGQELSTDDLPPVLRGPRPH 396 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 + A ++ E ++ + ++ ++ +S Sbjct: 397 GTSTGALIPGA----------TLAAIEREAILRTLEMVQGSTSRAAEVLGIS-------- 438 Query: 507 DADRLRKYLARF 518 +++ L + Sbjct: 439 -VRKIQYRLKEY 449 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 108/503 (21%), Positives = 189/503 (37%), Gaps = 53/503 (10%) Query: 19 RGSQRWSKWRPTLCLCQQESLVIDRLE-LLHDARSRSLFETLKRDIASVSPETEVVSVEI 77 R K R + + E L +L + + ++ P +V Sbjct: 5 SVGARPGKER--ILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAVLA 62 Query: 78 ELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI 137 ++ P + + + +T V + Sbjct: 63 DVRMP-------RMDGINLLRRAREQGSDAVFVMMTAFASVEAAV------------EAM 103 Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRM 196 ++ +P V ++ + A R++ + I P + + Sbjct: 104 RAGAENYLVKPLDVNAVLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAV 163 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 E +++ A +RA +L+ G +G GK A+ + E + F++VNCA L Sbjct: 164 YEVVKR-AAPTRATVLILGESGTGKELFAQALHEESPRADKA---FIKVNCAALSETLLE 219 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGH KGAFTGA +EG A+GG LFLDEIG++ Q LL+ ++++ F G Sbjct: 220 SELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLRVLQQREFERVGG 279 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + + D +L+A T RDL V G+FREDLY R+N+ TLP LRQR+ DI + + + Sbjct: 280 TQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQRKGDIPALVSHFI 339 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 ++++ G +R A L+ W GN REL V R +T D Sbjct: 340 DKYSKAYGKDIRGLAPGTLNAVLS------HDWPGNVRELENVVERAVVLCKGSELTADD 393 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + + R + A ++ E ++ ++ ++ Sbjct: 394 LPPTLRGPRPRERAPGALIPGA----------TLYEIEREAILRTLEMVGGSTSRAAEIL 443 Query: 496 DVSRQGKASVNDADRLRKYLARF 518 +S +++ L + Sbjct: 444 GIS---------VRKIQYRLKEY 457 >UniRef50_P12626 Nitrogen fixation protein anfA n=11 Tax=Bacteria RepID=ANFA_AZOVI Length = 533 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 115/515 (22%), Positives = 199/515 (38%), Gaps = 44/515 (8%) Query: 25 SKWRPTLCLCQQESLVIDRLELLHDARSRSLF---------ETLKRDIASVSPETEVVSV 75 L + QQ + + L+D R+ ++F E KR I +V V Sbjct: 49 DALSIVLGVMQQHLKMQRGIVTLYDMRAETIFIHDSFGLTEEEKKRGIYAVGEGITGKVV 108 Query: 76 EIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPAR 135 E + R + K ++ + AE Y+ R Sbjct: 109 ET--GKAIVARRLQEHPDFLGRTRVSRNGKAKAAFFCVPIMRAQKVLGTIAAERVYMNPR 166 Query: 136 LIQSSPPRKKEQPRGPGEVTII--DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 L++ + + ++ R + F S I + Sbjct: 167 LLKQDVELLTMIATMIAPLVELYLIENIERVRLENENRRLKHALKERFKPSNIIGNSKPM 226 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 + E I KVA ++A +L+ G +G GK +A I A V NCA L + Sbjct: 227 QEVYELIHKVAS-TKATVLILGESGVGKELVANAIHYNSP---NAEAALVTSNCAPLPEN 282 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 A S LFGH KG+FTGA +G A+GG +FLDE+GEL QA L++ ++ +TF Sbjct: 283 LAESELFGHEKGSFTGALTMHKGCFEQADGGTIFLDEVGELSPTVQAKLVRVLQNRTFER 342 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + V D ++IA T R+L ++V +G FREDLY R+N++ T+P LR+R D+ D Sbjct: 343 VGGSKPVKVDVRIIAATNRNLVEMVEQGTFREDLYYRLNVFPITVPPLRERGSDVIALAD 402 Query: 374 YEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + V + G +V R +T A +++ W GN REL + R + I Sbjct: 403 HFVSAFSRENGKNVKRISTPALNMLMSY------HWPGNVRELENVMERAVILSDDDVIH 456 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 + + + + + ++ E ++ + + Sbjct: 457 SYNLPPSLQTSKESG-----------TAFGLTLEEKIKAVECEMIVEALKNSSGHIGEAA 505 Query: 493 QLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + ++R+ + R+G+++++ Sbjct: 506 KELGLARRMLGV---------RMERYGISYKSFSR 531 >UniRef50_UPI00016C4DD7 sigma-54 dependent transcriptional regulator/response regulator n=2 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4DD7 Length = 475 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 108/494 (21%), Positives = 197/494 (39%), Gaps = 28/494 (5%) Query: 40 VIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGY 99 + R+ ++ D T +++ +S + EV + E + A + Sbjct: 6 PVQRVLVVEDLEDTR---TSLQELLQMSLKLEVDTAE---DGAAGLAMLRAKPYSLVITD 59 Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLAEARYL--PARLIQSSPPRKKEQPRGPGEVTII 157 P + T + + + ++ +P P + II Sbjct: 60 LRMPRVGGMKLIETIQAEKIPVTVIVTTGNGNIKDAVEAMRMGVYDFLTKPPDPQHLQII 119 Query: 158 DLDLSRYNAIASRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 R A+ A R+ + +R+P + E I VA + + +L+ G Sbjct: 120 VQRALRDRALQDEVAALRRELGERHTFQNVLSRSPKMVDLFELIGHVAG-TASTVLIRGE 178 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 TG GK +AR I + + +G FV VNC L + S LFGH KG++TGA R G Sbjct: 179 TGTGKEQIARAIHQASA--NYRTGEFVAVNCGALNENLLESELFGHEKGSYTGADRKRIG 236 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+ G LFLDEIG++ Q LL+ ++E+ F G + D +++A T +D+ + Sbjct: 237 RFELAHKGTLFLDEIGDVPMSMQVKLLRVLQERRFERVGGAEPIEIDVRVVAATHQDMEK 296 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRA 396 LV +GKFREDLY R+N+ +P LR+R EDI + + ++ + + EA Sbjct: 297 LVKDGKFREDLYYRLNVVRIDIPPLRERTEDIPVLVSHFCQKFVRVGQKPPTISPEALDL 356 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 + W GN R+L ++ R A G I + E+ R + + Sbjct: 357 L------TKCPWPGNVRQLENAIERACVTARDGVIRTKDLPPEVGRRPESSAAGKHPFHV 410 Query: 457 ALLGAEAENIDLF-DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 L + + + ++ ++++ ++ +SR+ + Sbjct: 411 DLNRKLPDQLSELTAAFEERYIRRALKRSRGHVGKCAKITGLSRRSITD---------KI 461 Query: 516 ARFGLTWEAVQDQH 529 A++ + E + + Sbjct: 462 AQYKIDKEQFKGEE 475 >UniRef50_B8IZ33 Two component, sigma54 specific, transcriptional regulator, Fis family n=15 Tax=Desulfovibrionales RepID=B8IZ33_DESDA Length = 459 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 110/494 (22%), Positives = 195/494 (39%), Gaps = 46/494 (9%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETL-KRDIASVSPETEVVSVEIELHNPWDFEEVY 89 + + E + L+ L + ++ + E+EV V ++ P Sbjct: 7 ILIIDDEKNYLLVLQTLLEDEGYTVTAISDPETALAFLDESEVDVVVTDMKMPKVTGR-- 64 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 L + + + L++ +P Sbjct: 65 -----------------QVLERVKKSWPYIPVLIMTAFGSIESAVELMKYGAFDYITKPF 107 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 E+ + + ++ ++ + I R+ ++ +E+ A SR Sbjct: 108 SNDELLLSIHNAVELARAHRQYRLLQEVMEDRYGVHKIVGRSRAIRDVLIMVER-AAPSR 166 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 + +L+ G +G GK +AR I + FV VNC L S LFGH KG+FT Sbjct: 167 STVLITGESGTGKELIARAIHYTSPRKD---NPFVSVNCMALNPGVLESELFGHEKGSFT 223 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA R G A+GG LFLDEI EL D Q LL+ ++E+ F G ++ D +++A Sbjct: 224 GAVAMRRGRFEQADGGTLFLDEIAELTPDLQVKLLRVLQERRFERVGGGEEIEVDIRVVA 283 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR 388 T +DL +V +G FR+DLY R+N+ LP LR+R+EDI + + V++ + + Sbjct: 284 ATNKDLAAMVEKGTFRDDLYYRLNVVQIPLPPLRERREDIPLLVAHFVDKVCTDNTMPAK 343 Query: 389 -FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 F+TEA + W GN R+L V I +D + EI Sbjct: 344 TFSTEALNYLTGYE------WPGNIRQLENVVESCLVLVPGTVINVDNLPAEIRD----- 392 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 +ES+ + LL + + D ++++ + +A + + +S+ Sbjct: 393 EESQFKSAVDLLPVQLDLADTLEKIEAALIRRALVRADLVQVKAAEYLGISKSL------ 446 Query: 508 ADRLRKYLARFGLT 521 L+ L ++ +T Sbjct: 447 ---LQYKLKKYAIT 457 >UniRef50_Q3A5A0 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Deltaproteobacteria RepID=Q3A5A0_PELCD Length = 470 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 121/491 (24%), Positives = 205/491 (41%), Gaps = 30/491 (6%) Query: 40 VIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGY 99 + + L+H ++ + +E + + + Sbjct: 4 SLRSVLLVHKDPKER-----SELAVAIRRTVDCTVLESDSP-AEALKLLQDDEVSVILTD 57 Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLA--EARYLPARLIQSSPPRKKEQPRGPGE-VTI 156 F P E + H +QI + + R + ++ P E + Sbjct: 58 LFAPSNEGLELLKKASQHNSQIVTIVGVPVDHRGMALESLRRGAFFCLNTPYNHEETIIA 117 Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 L ++ + + R+ GI + P ++ IEK+A + + +L+ G Sbjct: 118 TSRALQHHDLLTKGEIKARKFRKSDGFHGIIGQAPKMRQLFNNIEKLAAEGDSSVLVLGE 177 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK +AR I + FV VNCA + D S LFG+VKGAFTGA +++ G Sbjct: 178 SGTGKELVARAIHAHGPRSRKN---FVPVNCAAIPEDLLESELFGYVKGAFTGATQAKMG 234 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 L+ A GG LFLDEIG++ A QA LL+ ++EK F P G + VS D +++A T RDL + Sbjct: 235 RLQYAEGGTLFLDEIGDMKASLQAKLLRVLQEKEFEPVGGVKPVSVDVRIVAATHRDLEK 294 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 VAEG+FREDLY R+N+ +P LR+R+EDI ++ V + + + F+ +A + Sbjct: 295 SVAEGRFREDLYYRLNVIPLQIPPLRKRKEDISLLIERFVGIYNRKKKNPFKGFSDDALQ 354 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL 455 A Q W GN REL V RM+ F ++ + ++ Q+ Sbjct: 355 AL------KQYPWPGNVRELENLVQRMSIFFAGQSVSRKDLPEKYQGCDEAQQQPVQEQE 408 Query: 456 T--ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 +L + L +R + + ++ +L ++ R L + Sbjct: 409 NSISLEDGGVDFNLLVNRFENQLILQALNVTGGNKREAAKLLNLKR---------TTLIE 459 Query: 514 YLARFGLTWEA 524 L R + + Sbjct: 460 KLKRKNILTDN 470 >UniRef50_Q1PV55 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PV55_9BACT Length = 448 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 106/481 (22%), Positives = 183/481 (38%), Gaps = 40/481 (8%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF-QP 103 ++L +L E + S + V+ + E + +F P Sbjct: 3 KILVVDDDPALGEMCTELLKSKGYAADAVTNGADA-----IERISKDPEYAIVLTDFVMP 57 Query: 104 EKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 E + + + ++ +P E+ ++ + Sbjct: 58 EMDGIQLLSKIKQINSAIDVIVMTSYGTVSSAVEAMKHGASDYITKPFKRDELVLVIEKI 117 Query: 162 SRYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + + R + + I +P ++ + I V+ + A IL+ G TG G Sbjct: 118 LQMQRLEGEVDRLRSELGEKYTFGNIIGESPKIKKIYDIISHVSG-TEANILIQGETGTG 176 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A+ I + FV+V+C++L S LFGH KGAFTGA + R G R Sbjct: 177 KELVAKAIHYNSARNNHR---FVKVDCSSLTETLLESELFGHEKGAFTGATKDRVGRFRK 233 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+ G +FLDEIG + QA LL+ +++ F GSD + D ++IA T DL V + Sbjct: 234 ADHGTIFLDEIGNISLAVQAKLLRVLQDSEFEAVGSDESIKVDVRIIAATNADLEGCVEK 293 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLA 399 G FR DL+ R+N+ LP LR+R EDI + + H +V F+ + + Sbjct: 294 GLFRSDLFYRLNVIRIFLPPLRERTEDIPLLAAHFLAIHNKKNRKTVEGFSRDTLNILTS 353 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 +A W GN REL + R RIT + V ++ S Sbjct: 354 YA------WPGNIRELENVIERAVILCKKNRITPEDVPLYQEKMGTRPGLS--------- 398 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 +L ++ + + +I + ++ +SR L L ++ Sbjct: 399 --GKPLQELLEQTERQIIINTLEANDADKEKTAKILKISRA---------SLYNKLNKYK 447 Query: 520 L 520 + Sbjct: 448 I 448 >UniRef50_A7HIM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=A7HIM1_ANADF Length = 495 Score = 507 bits (1305), Expect = e-142, Method: Composition-based stats. Identities = 108/495 (21%), Positives = 195/495 (39%), Gaps = 37/495 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L ++ E + ++ + + V E + + + D + Sbjct: 30 RILIADDHDAVREGMAIALSRLGHDVLAVRGGAEAIAAYRKKPADVVVTDL---RMVPVD 86 Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 + + + A + + ++ E+P P + Sbjct: 87 GIEVVRRLRELDPDATVLVVSAHGTIAVAVEAMREGAIDFIEKPFSPDVLRARVEKSIEI 146 Query: 165 NAIAS-------RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 R + G+ + R+++Q+ KVA + A +L+ G + Sbjct: 147 ARERKGARTARARAEALEEDLGRDRAHGLVGSSEPMRRVLDQVRKVAS-TGATVLVLGES 205 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR I + R Q FV ++CA + S LFGH KGAFTGA + G Sbjct: 206 GTGKELVARAIHDASPRREQ---PFVSISCAAIPEGLLESELFGHEKGAFTGAIRRKLGR 262 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 ANGG LFLDE+GE+ Q LL+ ++E+ F G + V D ++++ T R+L Q+ Sbjct: 263 FELANGGTLFLDEVGEIPHAVQVKLLRVLQERQFERVGGEETVEVDVRVVSATNRNLAQM 322 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 V G+FREDLY R+N+ LP LR R D+E + V R A +V EA Sbjct: 323 VESGRFREDLYYRLNVVPILLPPLRDRPGDVEELARFFVARLAPRMSRAVTGLAPEALEL 382 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 + W GN REL + + FA + + + + + + P+ Sbjct: 383 L------RRHRWPGNVRELENVIEQALVFAEGELVRPRDLPEGVRK-------APPAPSL 429 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 + + D+ + ++ + ++A +A+ + A +L + L L Sbjct: 430 PVPSGDRSLTDILEDLERQLILAAYEKARGVKAETARLLGI---------KPSALYYKLE 480 Query: 517 RFGLTWEAVQDQHSS 531 ++G+ + + +S Sbjct: 481 KYGIVKAGEKAEETS 495 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 95/343 (27%), Positives = 153/343 (44%), Gaps = 26/343 (7%) Query: 179 LDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQF 238 + ++ + E IEKVA K I++ G +G GK + R + + R Sbjct: 277 DKIGFKEMIGQSNSMKELYELIEKVADK-NVNIMVTGESGTGKELVVRALHYGGERRD-- 333 Query: 239 SGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADE 298 FV+VNCA + D S LFGH KGAFTGA + R G A+ G LFLDEIG++ Sbjct: 334 -NPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTLFLDEIGDMDLSI 392 Query: 299 QAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTL 358 QA L+ I+++ F G ++ + D ++I T +DL++ V EG+FREDLY R+N T + Sbjct: 393 QAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFREDLYYRLNTITLYV 452 Query: 359 PGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 P LR+R+EDI + + ++ + + + E A + + W GN REL Sbjct: 453 PPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEY------DWPGNVRELEN 506 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHV 477 ++ R I L+ + I + + ES+ + M+ E + Sbjct: 507 AMERAIILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEI------TIRNMEREII 560 Query: 478 IAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 I + + +SR+ L + F + Sbjct: 561 IEALEKCDWNRTKTSKSLGISRR---------TLYNKMKEFNI 594 >UniRef50_Q1PZT5 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZT5_9BACT Length = 448 Score = 506 bits (1304), Expect = e-142, Method: Composition-based stats. Identities = 111/479 (23%), Positives = 187/479 (39%), Gaps = 41/479 (8%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L + + +++ + + + + +D A P Sbjct: 7 ILFTDDEGTFRNIMSKELDRMGYNVTCCA-----SGQETIKNMQERDYDVAILDMNMPVM 61 Query: 106 EDYLIHITTGTHVAQI-CWFLLAEARYLPA-RLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 T L + A + I+ +P E+ ++ Sbjct: 62 NGIETLKKVKTIEPTTEVIILTGQGSIENAVQAIKLGAYDYLTKPCQLKELDLLLQRALE 121 Query: 164 YNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 ++ + D S + +P + + I+K A S +L+ G +G GK Sbjct: 122 KRKLSRENFHLKTLVHDVQKPSSMIGNSPAIKAVFKMIDKTA-PSDVTVLIQGESGTGKE 180 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 A+ I + + FV VNCATL+ S LFGHVKGAFTGA ESR GL A Sbjct: 181 LAAKMIHQYSKR---ADKPFVIVNCATLQESLLESELFGHVKGAFTGAAESRVGLFEIAE 237 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIGEL + QA LL+ I+ G +R ++ D ++IA T ++L V EG+ Sbjct: 238 GGTLFLDEIGELTVNTQAKLLRVIQSGEIRRVGDNRVITVDARIIAATHKNLPLEVKEGR 297 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FREDLY R+N+ T LP LR+R++D+ + + +++ ++ + EA A + Sbjct: 298 FREDLYFRLNVITLRLPSLRERKDDLTALIQHFLQKFC-KGERTMDMHPEALHAMTLY-- 354 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL ++ R A I+++ + D I Y Sbjct: 355 ----DWPGNIRELENTIERTVVLADGNIISIEELPDNIRGRTYEH-------------YG 397 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 ++ H+I + ++ + +S L + + + Sbjct: 398 KNGEIALSEVEKNHIIQVLKEKNWHKPLAAKTLGIS---------LKTLYNKMKMYNID 447 >UniRef50_Q2LUG8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=6 Tax=Bacteria RepID=Q2LUG8_SYNAS Length = 456 Score = 506 bits (1303), Expect = e-142, Method: Composition-based stats. Identities = 113/452 (25%), Positives = 183/452 (40%), Gaps = 31/452 (6%) Query: 75 VEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYL 132 VE + + D P + + + Sbjct: 30 VEEAASGEEAVQSIAGGAFDLVLLDYKMPGMDGMQVLQEVKRLNPETDVVIITAYGTIET 89 Query: 133 PARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFL--KSGIATRN 190 +++ +P E+ ++ ++ + R+Q D I + Sbjct: 90 AVDAMKAGAVDYITKPLEFDELLLLLDRVAERRTLIRENEILRRQLKDQGVTTDAIIFTS 149 Query: 191 PHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATL 250 + +VA SRA +LL G +G GK LAR I +L + + VNC L Sbjct: 150 QKMAALTSMAARVAS-SRATVLLQGESGTGKELLARLIHQLSPRSTR---PIITVNCGAL 205 Query: 251 RGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKT 310 S LFGH KGAFTGA R G A+GG LFLDEIGEL Q LL+ ++E+ Sbjct: 206 PESLIESELFGHEKGAFTGATSRRIGRFEEADGGTLFLDEIGELTMPVQVKLLRFLQERE 265 Query: 311 FYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEP 370 F G + + +D ++I+ T RDL +V E KFREDLY R+N+ ++P LR+R+EDI Sbjct: 266 FQRVGGNTNIRADVRIISATNRDLETMVKEEKFREDLYYRLNVVVMSIPPLRERREDIPA 325 Query: 371 NLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 +D+ +ER A+ G + ++EAR + + + GN REL + R A + Sbjct: 326 LIDHFLERFAAENGKKISGISSEARDLLMKY------DYPGNVRELENIIERAVVIARNE 379 Query: 430 RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA 489 I ++ + + L L GA + ++ + + +A Sbjct: 380 IIYMEDLPFREDTLVATSGGVPEEGEGRLRGA-------IENLEKQMIQDAMEKAGDHQT 432 Query: 490 AGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 ++ +S + LR L ++GL Sbjct: 433 RAAEMLGLSERM---------LRYKLKKYGLK 455 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 115/492 (23%), Positives = 202/492 (41%), Gaps = 43/492 (8%) Query: 39 LVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARG 98 + + +L + E+L + + VV+ + + E++ + Sbjct: 1 MPTETTRILVVDDEEIVRESLGGWLE---KDGYVVAPLPDGRSA--VEKLKSERWSIMIV 55 Query: 99 YEFQPEKEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI 156 P + + + ++ +P P E++I Sbjct: 56 DLKMPGMDGLQVLEAAKKLQPELAVVIMTAYATVDTAVTAMKLGAYDYLVKPFDPEELSI 115 Query: 157 IDLDLSRYNAIASRFAEERQ-QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 + + ++ A RQ ++ + +++P + E + A +S + IL+ G Sbjct: 116 MMQKIVSQQSLVRENAVLRQALKQEYRFRDLLSKSPAMQSVFELA-RTAARSNSTILVLG 174 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 +G+GK LAR + G FV V+CA L S LFGH KG+FTGA R+ Sbjct: 175 ESGSGKEVLARAVHAESPR---AGGPFVAVSCAALTESLLESELFGHEKGSFTGAISRRK 231 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 G +A+GG LFLDE+G++G Q LL+ +EE+ F+ G + + D ++IA T RDLR Sbjct: 232 GKFEAAHGGTLFLDEVGDIGPKLQLDLLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLR 291 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEAR 394 + EGKFREDL+ R+N+ +P LR+R+EDI ++ VER + + + +A Sbjct: 292 RAAHEGKFREDLFYRLNVIPILVPPLRERREDIPLLVENFVERLSVEMKRRIEGVSPDAM 351 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA 454 A +A W GN REL + R A AT I L + Sbjct: 352 GALMA------HDWPGNVRELRNVLERGAVVATGTVIQLSDL---------------GLP 390 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 ++ + + ++ HV A+ A + ++ + R L Sbjct: 391 TRLEAASKPGTLASLEEVEKRHVAAVLAHANGNVSQSARILGIDRV---------TLYNK 441 Query: 515 LARFGLTWEAVQ 526 + ++GL + + Sbjct: 442 MRKYGLRRDGEE 453 >UniRef50_Q8Z333 Transcriptional regulatory protein zraR n=36 Tax=Proteobacteria RepID=ZRAR_SALTI Length = 441 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 109/427 (25%), Positives = 173/427 (40%), Gaps = 30/427 (7%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPP 142 +V + D E + I I + +++ Sbjct: 42 LAQVREKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGAL 101 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 +P + L + A E G+ +P ++ +I Sbjct: 102 DYLIKPLD---FDRLQETLEKALAHTRETGAELPSASAAQF-GMIGSSPAMQHLLNEIAM 157 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA S A +L++G +G GK +AR + + V +NCA L S LFGH Sbjct: 158 VA-PSDATVLIHGDSGTGKELVARALHACSARSDK---PLVTLNCAALNESLLESELFGH 213 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA + REG A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S Sbjct: 214 EKGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISV 273 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D LIA T RDL + V+ G+FR+DLY R+N+ +P LRQR+EDI D+ + R A Sbjct: 274 DVWLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER 333 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 +V+ F +A + + W GN REL ++ R T I+ + I Sbjct: 334 NRKAVKGFTPQAMDLLIHY------DWPGNIRELENAIERAVVLLTGEYISERELPLAI- 386 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 A T + + I ++ E ++A + + ++R+ Sbjct: 387 ------------AATPIKAENSAEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKT 434 Query: 502 KASVNDA 508 + Sbjct: 435 LLAKLSR 441 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 195/475 (41%), Gaps = 34/475 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L R E L +++ + E+ + H+ + + + + Sbjct: 5 RILAVDDERDTCEALADMLSAWGHKVEIA---FDGHDALRKANEFRPDVVLSDLAMPETD 61 Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 L ++ + + I+ +P + + Sbjct: 62 GLWLLRNLKEELPDCPVVFLTGRGTIDAAVESIREGAYDFIVKPLDTARLKVCIDRALEK 121 Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 R++ S + ++ ++IE +EKVA S+A + ++G +G GK + Sbjct: 122 KETMREVQTLRRRLKQLGSSDLIAQSVGMRKVIELVEKVA-PSKASVSISGESGTGKEVV 180 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 +R + L R + F+ +NCA++ S LFGH +GAFTGA + R G+ A+GG Sbjct: 181 SRAVHNLSLRRDK---PFIAINCASIPATLIESELFGHERGAFTGADQRRPGVFEMAHGG 237 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 LFLDE+GE+ + QA LL+ +EE G ++ D +++ T RDL+Q + G+FR Sbjct: 238 TLFLDELGEIPIELQAKLLRVLEEGKLRRLGGKVEIEVDVRVLCATNRDLKQEIKNGRFR 297 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATS 403 EDLY R+N++ LP LR+R++D+ + + V++ +G V + EA + Sbjct: 298 EDLYFRLNVFQIHLPPLRERRDDVPILVQHFVDKFRGDSGKRVSGVHPEAMEVLKNY--- 354 Query: 404 PQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEA 463 W GN REL +V R IT + + ++ R + Sbjct: 355 ---DWPGNIRELRNAVERAVILCDGELITREHLPPDMAGKSPERHTFRLPFGLS------ 405 Query: 464 ENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 D ++ E+++ ++ + A ++ VS + L L R+ Sbjct: 406 -----LDAVEREYILGSLQRNGNNKARTAEVLGVSEK---------TLYNKLNRY 446 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 101/499 (20%), Positives = 194/499 (38%), Gaps = 43/499 (8%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L S+ L + + +V++ + +D A P Sbjct: 5 RILVADDEESMRWVLSKALKRKG-----FTVDLADDGRQALALIQENSYDLAILDIKMPG 59 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + I + + ++ +P + I + Sbjct: 60 MSGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPFDLDVIDAIVEKVG 119 Query: 163 RYNAIASRFAEERQQTLDFL--KSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 R IA + + +Q+ + + I + + + I KVA S IL+ G +G G Sbjct: 120 RAREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVA-DSDITILIQGESGTG 178 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I + FV +NCA + D S LFG +GAFTGA E ++G Sbjct: 179 KEMVARAIHFNS---GRLGKPFVAINCAAIPRDLLESELFGSERGAFTGASERKQGKFEQ 235 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 AN G +FLDEIG++ D QA +L+ ++E G + ++ + +++A T ++L++ V + Sbjct: 236 ANQGTIFLDEIGDMPLDLQAKILRVLQEHEVTRVGGTQSIAVNVRIVAATNQELQERVRQ 295 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLA 399 +FREDLY R+N+ TL LR+R++DI + Y ++R + + EA Sbjct: 296 REFREDLYYRLNVVPITLAPLRERRDDIPELVRYFLDRTCTELSIPPKQLTPEAMALL-- 353 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + +W GN REL ++ R + +T + + ++L A++ Sbjct: 354 ----SRHSWPGNVRELENTIKRAVILSNDPMLTEADFDGLQPEGEETAMTPQDASLEAIV 409 Query: 460 GAEAE--------------NIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 A+ + + +++ + I + + + ++R Sbjct: 410 EAKLRSCLTGIEKLDKSDIHAKVLQQVERPLIRFILEKTRWNQVKAADILGINR------ 463 Query: 506 NDADRLRKYLARFGLTWEA 524 + LRK + + + Sbjct: 464 ---NTLRKKIHDLEIELKR 479 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 111/471 (23%), Positives = 194/471 (41%), Gaps = 37/471 (7%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 +++++L S L+ + V + E+ + D Sbjct: 4 EKIDILVVDDDVSHCTILQALLRGWGYN-----VALAYSGREALEKASGHVFDLVLCDVR 58 Query: 102 QPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV-TIID 158 E + I + + +++ +P + ++ Sbjct: 59 MAEMDGIETLREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPLDFDRLQETLE 118 Query: 159 LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L+ +A ++ +SG+ ++P +++ +I VA S A +L++G +G Sbjct: 119 KSLAHAQEVAGEL-----PSVSASQSGMVGKSPAMQQLLSEIAMVA-PSDATVLIHGDSG 172 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR + + V +NCA L S LFGH KGAFTGA + REG Sbjct: 173 TGKELVARALHASSARSDK---PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRF 229 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 A+GG LFLDEIG++ Q LL+AI+E+ GS++ +S D +LIA T RDL Q Sbjct: 230 VEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTLSVDVRLIAATHRDLAQEA 289 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAW 397 + G+FR+DLY R+N+ T P LRQR+EDI ++ ++R A+ +V+ F +A Sbjct: 290 SAGRFRQDLYYRLNVVTIETPSLRQRREDIPLLAEHFLQRFAARNRKAVKGFTPQAMDLL 349 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 + +A W GN REL ++ R T I+ + I + Sbjct: 350 IHYA------WPGNIRELENAIERAVVLLTGEYISERELPLAIANQAMPLMPA------- 396 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 + I ++ E ++A + + ++R+ + Sbjct: 397 ------QAIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR 441 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 110/477 (23%), Positives = 197/477 (41%), Gaps = 30/477 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L ++ L + + SV + E++ D P Sbjct: 3 HILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQI-----DLIISDLKMPR 57 Query: 105 KEDYLI--HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 H+ + ++ +P E+ + Sbjct: 58 MSGIDFLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKAL 117 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Y+ + + R++ + +P + QI +VA ++ IL+ G +G GK Sbjct: 118 DYSKLQNENWLLRRELEQNRDRTLVGNSPAMESLRNQIAQVA-PAKTSILITGESGTGKE 176 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A+ + L ++ V +NCA + S LFGH +GAFTGA E ++GL+ ++ Sbjct: 177 LVAQALHRLSPRSNKA---LVSINCAAFAENLLESELFGHERGAFTGALERKKGLMEVSD 233 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIGE + Q LL+ ++EKTF G ++SSD ++IA T R+L Q++ EG Sbjct: 234 GGTLFLDEIGEFPLNLQPKLLRVLQEKTFRRVGGTAEISSDIRIIAATHRNLEQMITEGT 293 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFA 401 FREDLY R+N+ + LP LR R+EDI +ER + G + + +++A+ + Sbjct: 294 FREDLYYRLNVVSLHLPPLRHRREDIPLLSQLFLERLSRDMGCPLPQLSSQAQHDLYHYE 353 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL + R F + + + + + + +A L Sbjct: 354 ------WPGNVRELQNILERGLLFCDGPTLEQNHLPQQFHSQAPHHNGCSETAAMPL--- 404 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + + + ++ + + A A+ + A +L +SR L+ L ++ Sbjct: 405 QQPLPEHLETIEQKLIQAALIDARGVQAKAAELLGISRSN---------LQYKLKKY 452 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 114/457 (24%), Positives = 183/457 (40%), Gaps = 19/457 (4%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH--ITT 114 ++ + V E ++ E + +D P ++ I + Sbjct: 17 PGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDVRMPGQDGLTILEQLRK 76 Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE 174 + R IQ +P EVT++ L + +AS+ E Sbjct: 77 NGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPFDVEEVTLVVKRLFDHQQLASKVREL 136 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 ++ D + + +P + +QI +VA + A +L+ G TG GK LA I Sbjct: 137 EAKSFDP-RDKMIGNSPAMQEIYKQIGRVAH-TDATVLITGETGTGKEVLANLIHVNSAR 194 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 R+ G V+VNCA L S LFGH KGAFTGA R+G A+ G +FLDEIGE+ Sbjct: 195 RN---GPMVKVNCAALPESLLESELFGHEKGAFTGAVAQRKGRFELAHKGSIFLDEIGEM 251 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+ ++E+ F G V D ++IA T RDL V G FREDLY R+N+ Sbjct: 252 TLATQKKLLRILQEREFERVGGTTTVRVDVRVIAATNRDLEADVRAGTFREDLYYRLNVI 311 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHA-SLTGDSVRFNTEARRAWLAFATSPQATWRGNFR 413 T LP LRQR DI ++ ++++ + + R + EA + W GN R Sbjct: 312 TLHLPALRQRIGDIPLLAEFFLDKYRYAPSSPPARISEEAMERLNNY------DWPGNVR 365 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQ 473 +L + R + IT + + L + + + + A L ++ +L ++ Sbjct: 366 QLEHEIERAVILSRGNVITSEHM-----SLVPSSRSALQVDIAARLREKSTLEELLADVE 420 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + Q + +S Sbjct: 421 RLALQEALVQHDDDLKVAARSLGLSEAEFQKRQKKYS 457 >UniRef50_C0QRG3 Transcriptional regulatory protein ZraR n=2 Tax=Aquificales RepID=C0QRG3_PERMH Length = 442 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 111/480 (23%), Positives = 192/480 (40%), Gaps = 45/480 (9%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L R + +K + + S +E + D + PE Sbjct: 4 RILIVDDDRDILNLMKLKLKNYGYTIFTESSPVEA-----LNRIKDEHFDLILVDQLMPE 58 Query: 105 KEDYLIHITTGTHVA--QICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + ++ +P E+ II Sbjct: 59 LSGLEFIDRLKERDIKTPVILMTAYGSLEDAVLAMKKGAFHYITKPINFEELKIIIDQAL 118 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + E + + I +P +++E +K+A +L+ G +G GK Sbjct: 119 EVSDLKKELNELKSLLS----TDIIAESPQMKQVLETAKKIA-PFDTTVLITGESGTGKE 173 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A I + + + F+ +NC + + S LFG+ KGAFTGA ++GL+ A Sbjct: 174 MIANFIHKNSLRKER---PFIAINCGAIPSELLESELFGYKKGAFTGANTDKKGLIEEAE 230 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIGEL D Q LL+ ++E P GS+R D + IA T RDL+++V EGK Sbjct: 231 GGTLFLDEIGELPLDLQVKLLRVLQENEIKPIGSNRPKKIDVRFIAATNRDLKKMVEEGK 290 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFA 401 FREDLY RIN+ +P LR+R+EDI P Y + + S G R + +AR L + Sbjct: 291 FREDLYYRINVIPIHIPPLRERKEDIIPLAQYFINKFCSRYGIPKKRLSEKAREKLLNY- 349 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 ++GN REL + R IT + +++ QE +P Sbjct: 350 -----DYKGNVRELENIIERAVLTTEGEEIT--DIPVTVSKRYILSQELKP--------- 393 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + + ++ + + + ++ ++R ++ + + R+G+ Sbjct: 394 ---FKEAKKEFEESYLKNLLEKTDFNISKASKIAGITRA---------QIYRMIKRYGIE 441 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 102/437 (23%), Positives = 182/437 (41%), Gaps = 33/437 (7%) Query: 88 VYACLHDFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKK 145 + D + + + I ++ ++ Sbjct: 41 IEKQEFDIVLTDIKMEKVDGFEILRKCKALYPDTEVIMITGYATVENAVTAMKQGAFYYI 100 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 +P + I L+ S + + RQQ K I T+N +++E ++A Sbjct: 101 AKPFKLDIIRKIILEASEKVKLKKEVKQLRQQLDFHEKVNIITQNSKMLKLLEIARQIA- 159 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 + +L+ G +G GK AR I + G F+ VNC + + LFGH KG Sbjct: 160 PTDCNVLITGESGTGKELFARYIHLNSLRK---KGPFLAVNCGAFSEELLSNELFGHEKG 216 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA ++GL+ A+ G LFLDEI E+ QA LL+ I+E+ F+ G+ + D + Sbjct: 217 AFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLRVIQEREFFRLGATEPIKVDVR 276 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 IA T RD+++ V GKFREDLY R+N+ +P LR+R++DI + Y ++++ L Sbjct: 277 FIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRERKDDIPLLVAYFSKKYSLLMKK 336 Query: 386 SVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + + EA + + + GN REL + R S +I ++ + ++ L+ Sbjct: 337 EITGVSEEAINLLVNYE------YPGNVRELENIIERAVVLCNSSQIDVEHLPQDLKELK 390 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 + + + ++ E++ I R+ + Q+ + R Sbjct: 391 IEVFTKKEGKFMS-----------LEELEKEYIKWILREVGNNKTVAAQILGIDRV---- 435 Query: 505 VNDADRLRKYLARFGLT 521 L + L +G+ Sbjct: 436 -----SLWRKLKNYGIE 447 >UniRef50_Q1IL93 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Acidobacteria RepID=Q1IL93_ACIBL Length = 484 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 114/497 (22%), Positives = 206/497 (41%), Gaps = 36/497 (7%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 L + L+ D E R+ E E V+ + ++ A +D Sbjct: 15 ELSAAGVVLIIDD------EAAIRESLQTLLELEGYQVDTAVDGGDGLMQMAAHPYDLVL 68 Query: 98 GYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 P++ I I + + +Q+ ++P ++ Sbjct: 69 LDFALPDRNGIEILKEIRSRDTEISVIMITAYGTVENAVNAMQAGATNFIQKPWDNEKLL 128 Query: 156 I-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 + ++R +R + I ++ R+ + + ++A SR+ +LL Sbjct: 129 ADVGAAIARRRVEEENLQLKRALKQRYNFENIIGKSEPMLRIFDLVTQIA-PSRSTVLLQ 187 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ I + + FV +N ++ D STLFGHVKGAFT A S+ Sbjct: 188 GESGTGKELIAKAIHMNSTRKDRA---FVPINTGSMPTDLLESTLFGHVKGAFTSAIASK 244 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 +GL A+GG LFLDEIG + + QA +L+ ++++ F G +++ D ++IA T DL Sbjct: 245 KGLFEVADGGTLFLDEIGTMSMETQAKILRVLQDRKFMHLGGVQEIQVDVRIIAATNVDL 304 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEA 393 RQLV EGKFREDL+ R+N+ T LP LRQR+ D+ ++ +++ + R EA Sbjct: 305 RQLVKEGKFREDLFYRLNVITIDLPPLRQRRLDVPLLCEHFIKKFCEENAKPLMRMTPEA 364 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 R L + W+GN REL + R A IT+D++ D + + Sbjct: 365 LRPLLDY------NWQGNVRELENVIERAVVLANGPSITIDLLPDNVVGRGSSLSFVETR 418 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 +L ++ + + ++ + + + F + L + Sbjct: 419 PDASLF-------EIMEDCERRIIVDMLEKVGWNQTEAAEKFRIP---------LSTLNQ 462 Query: 514 YLARFGLTWEAVQDQHS 530 + R + + + + Sbjct: 463 KIKRLSIEIKKKASREA 479 >UniRef50_B3Q676 Transcriptional regulator, NifA subfamily, Fis Family n=9 Tax=Bacteria RepID=B3Q676_RHOPT Length = 561 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 103/425 (24%), Positives = 175/425 (41%), Gaps = 33/425 (7%) Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPR--KKEQPRGPGEVTIIDLDLS 162 ++ ++ + AE Y+ RL+ P + ++ Sbjct: 159 QDKLAFFCVPIVLAQKVLGTICAERVYMNQRLLNQDAELLAMVASLIAPAVELYLIENVD 218 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + + F + I + + + KVA ++A +LL G +G GK Sbjct: 219 KVRLETENRRLKSELKQRFRPANIIGNSKPMQEVYAMVHKVAS-TKATVLLLGESGVGKE 277 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A + G F++ NCA L A S LFGH +GAFT A + +G A+ Sbjct: 278 LVASALHYNSPV---ADGPFIKANCAALPEALAESELFGHERGAFTSAIATHKGYFEQAS 334 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDE+GEL QA LL+ ++E+TF G + V D ++IA T R+L ++VAEG Sbjct: 335 GGTIFLDEVGELSLPTQAKLLRVLQERTFERVGGAKPVKVDVRIIAATNRNLAEMVAEGT 394 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFA 401 FREDL+ R+N++ T+P LR R D+ D+ V +++ G + R +T A +++ Sbjct: 395 FREDLFYRLNVFPITIPPLRDRGSDVITLADHFVTTYSAEIGKPIKRISTPAINMLMSY- 453 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL + R A G I + + G Sbjct: 454 -----HWPGNVRELENVIERSVILAEEGVIHGYDLPPSLQTPTETG-----------TGF 497 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 D ++ E ++ + + ++R+ + R GLT Sbjct: 498 SGTLEDRVTAVEYEMIVEALKASNGNVGQAATTLGLTRRMLGL---------RMERHGLT 548 Query: 522 WEAVQ 526 ++ + Sbjct: 549 YKTFR 553 >UniRef50_Q6ARB9 Probable two-component system response regulator (Ntr family) n=1 Tax=Desulfotalea psychrophila RepID=Q6ARB9_DESPS Length = 443 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 94/421 (22%), Positives = 169/421 (40%), Gaps = 35/421 (8%) Query: 102 QPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + L ++ + + + ++ +P + I Sbjct: 57 RIDGLATLSLLSQQNNRIPVIVITAFSSMENAIEAMKKGAFDYVTKPVDIDNLHIAISKA 116 Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 I+ + + D I + + QI +A S A ILL+G +G GK Sbjct: 117 LH-QKISPPLSPGTEPQADSKFPEIIGESAPMQELFSQISLIA-PSDATILLSGESGTGK 174 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A I + + GA + +NCA L + S LFGH GAFTGA + ++GL A Sbjct: 175 ELVATAIHRHSKRKE---GALIRINCAALHENLLESELFGHELGAFTGAAKQKKGLFERA 231 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 + G LFLDEIG++ Q +L+ ++E F G + + + ++IA + R+L +L+ EG Sbjct: 232 DKGTLFLDEIGDMSLTTQVKILRVLQEGEFERVGGNDSIKVNVRIIAASHRNLEKLIEEG 291 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAF 400 FR+DL+ R+++ LP LR+R DI ++ + + ++ F+ EA + + Sbjct: 292 TFRQDLFFRLSVVPLHLPALRERLVDIPILANFFLSLYNKKNRKDIKGFSQEALDLLMEY 351 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN REL S+ R +IT + + R R Sbjct: 352 ------PWPGNIRELENSIERGVILCLGEQITAHELPPQFFRNRSPG------------- 392 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 E + D ++ + ++ +A + ++R L + +GL Sbjct: 393 -ELSSRDTLRDVEKRAIQQALARSGFNKSATAKQLGIAR---------QTLLNKIRDYGL 442 Query: 521 T 521 Sbjct: 443 E 443 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 107/483 (22%), Positives = 194/483 (40%), Gaps = 39/483 (8%) Query: 60 KRDIASVSPETEVVSVEIELHNPWDFEEVYACLHD--FARGYEFQPEKEDYLIHI----- 112 K I V E + E + +E + A + + F P+ + + Sbjct: 4 KGIILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNING 63 Query: 113 -------TTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYN 165 A + + +++ E+P + + R Sbjct: 64 VELIEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFKLDRLRSVVEKALRRQ 123 Query: 166 AIASRFAEERQQTLDFLKSG---IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + E +++ F + I +P + I++VA S +L+ G +G GK Sbjct: 124 GLRQEVLEIKEKQWTFDEESDGIIIGNSPQMKEIYSLIKQVAKSSSTTVLIQGESGTGKE 183 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSA 281 +AR + L + SG FV++NCA L + LFG+ KGAFTGA + GL A Sbjct: 184 LVARAVHRLSARK---SGRFVDINCAALTESLLEAELFGYEKGAFTGAATAGKPGLFEIA 240 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 + G +FLDEIGE+G QA LL+ ++E+ F G + + D ++IA T R+L + +A G Sbjct: 241 DKGTVFLDEIGEMGVLLQAKLLRILQERQFKRVGGIQDIKIDVRIIASTNRNLEEEIASG 300 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAF 400 FR+DLY R+ + +P LR+R+EDI + Y + ++ + G ++ + R L + Sbjct: 301 NFRKDLYYRLKVLPIYVPPLRERREDIMLLVKYFIHKYNNEFGKNICDIPPDTERILLEY 360 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE--DEINRLRYNWQESRPSALTAL 458 W GN REL V R A ++ V + + T Sbjct: 361 G------WPGNIRELKNVVERGVLIANGSALSPKYVANISVGKKESESLAGITVDGNTDC 414 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + ++ + M+ +H+ + ++ ++ ++R L + + Sbjct: 415 VSSDGLDARSLAFMEKQHIENVLKETSWRRTEAARVLGINR---------TTLYNKIKEY 465 Query: 519 GLT 521 G+ Sbjct: 466 GIA 468 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 102/456 (22%), Positives = 171/456 (37%), Gaps = 57/456 (12%) Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 L H+T+ + ++ +P E+ + R Sbjct: 59 SGLGLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPFDRDELISVIEKAIR 118 Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 E + K GI + + + IEKVA ++ IL+ G TG GK Sbjct: 119 TR--IKNHGEVILAEEEIDKYGIVGCSEKIREIYKTIEKVAS-TKTTILITGETGTGKEL 175 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +A I + ++++NC + + + LFG+ KGAFTGA ++ G A+ Sbjct: 176 IAHAIHRGSPRKDNA---YIKINCGAIAKNLIEAELFGYEKGAFTGAASAKPGKFELADQ 232 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G +FLDEIGE+ D Q LL+ ++++TF G + + D ++IA T RDL + + EG F Sbjct: 233 GTIFLDEIGEIPRDMQVKLLQVLQDQTFERVGGIKTIQVDVRIIAATNRDLIKEIKEGNF 292 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 REDLY R+N+ +P LR+R+EDI P Y ++R ++ + + + Sbjct: 293 REDLYYRLNVVPIKMPPLRERKEDIIPLTHYFLDRFNDKLNMDIKGIDPQVLECF----- 347 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS--------- 453 + W GN REL + R+ I+ + V +EI + Sbjct: 348 -KKYNWPGNIRELENLIERIILLTKGNTISPEDVPEEIKTMEDQDLPENEVHEKNPFEEY 406 Query: 454 ------------ALTALLGAEAENIDLFD-----------------------RMQLEHVI 478 L A + E D + ++ + + Sbjct: 407 LLREMENFTERLVLMARSEKKREAGDRLEEDSLDSTEKDQGVYRKFIKSKTAEVEKKMIE 466 Query: 479 AICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 I + + SR+G LRK Sbjct: 467 KILEECSGNITHAAKRLGFSRKGLQIKMVKYNLRKK 502 >UniRef50_Q1IQS1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IQS1_ACIBL Length = 466 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 104/442 (23%), Positives = 181/442 (40%), Gaps = 33/442 (7%) Query: 94 DFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP 151 D E + ++ + + ++ +P Sbjct: 52 DIILADLRMGELSGIDFLASVKKLLPRTEVAIMTGYGSIETAVQSMKLGAYDYITKPFRV 111 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 E+ II ++ + + R++ + GI + ++ + ++ +R P Sbjct: 112 EELKIILQRMAEKVRLVAENHFLRERVNTEMELHGIVGSSAKIQDVLRMVGRL-KDTRTP 170 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK +AR + FV V+C +L S LFGH KGAFTGA Sbjct: 171 VLICGESGTGKELVARAMHF---RGGFAKRPFVAVDCGSLVPTLIESELFGHEKGAFTGA 227 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + +EGL ++ANGG +FLDEIGEL D QA LL+ +++K P GS++ V D ++IA T Sbjct: 228 IKPKEGLFQAANGGTIFLDEIGELPLDLQAKLLRVLQDKQVRPVGSNQSVKVDVRVIAAT 287 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRF 389 RDL G FR+DLY R+N+ T LP LR+R+ DI + + ++R ++ G V Sbjct: 288 NRDLEAGYKTGTFRKDLYFRLNVVTVYLPSLRERKSDIPSLIQHFIDRPSA--GREGVEV 345 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 ++A ++ + Q W GN REL + R I +D + + + Sbjct: 346 TSQAMKSLM------QYDWPGNVRELENCIERAVALGNGEVIDVDDLPPSLQAMAPKKNA 399 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 S + ++ + + Q ++ +SR Sbjct: 400 PAVSEGYDSTD--------LEDIERTTIQRVFDQVGGDKGLALKMLGISRA--------- 442 Query: 510 RLRKYLARFGLTWEAVQDQHSS 531 L + + R+ + +S Sbjct: 443 TLYRKIKRYNIDISRTARAAAS 464 >UniRef50_Q2RHS4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=Q2RHS4_MOOTA Length = 748 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 103/442 (23%), Positives = 171/442 (38%), Gaps = 32/442 (7%) Query: 80 HNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQS 139 P D + + F E + I L A P+ ++ Sbjct: 328 PQPLDLTGINLRREFHDQSVFFPRPSEADIRAILAELGKYTPEDELNCGACGYPSCREKA 387 Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 + +++ +E + + + + Sbjct: 388 VAVYH----GLAENRMCLPYFIAQLEKSNFHLRQELK-AFQGKFGQLVGNSAAMQEVYRL 442 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IEKVA K+ A +L+ G +G GK +AR I + FV +NCA L S L Sbjct: 443 IEKVA-KTDATVLIRGESGTGKELVARAIHYHSRRSE---APFVSINCAALPETLLESEL 498 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH +GAFTGA +++GL AN G +FLDEIG++ Q+ LL+ ++E F G R Sbjct: 499 FGHARGAFTGAVTAKKGLFEEANEGTIFLDEIGDISLGLQSKLLRVLQEGEFLRVGETRP 558 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + +++A T RDL + V +G FR +L R+N+ T LP LR+R++DI + +E+ Sbjct: 559 TRVNVRVLAATNRDLEKAVKDGAFRPELLYRLNVITIWLPPLRERRDDIPLLARHFLEKS 618 Query: 380 ASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 G V F EA A + +A W GN REL + R S RI L + Sbjct: 619 CQRLGKEVNGFTHEAMDALI------RADWPGNVRELENVIERAVILTESKRIELGDLPR 672 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + + + + ++ +++ + A ++ + Sbjct: 673 QFRNMAAGASGWA-------FTRGMSFKEAVAAYESRLILQALEESQGVQARAAEILGLK 725 Query: 499 RQGKASVNDADRLRKYLARFGL 520 R L + + R+ L Sbjct: 726 RS---------TLNEMIKRYNL 738 >UniRef50_D1R5K3 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5K3_9CHLA Length = 462 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 105/443 (23%), Positives = 170/443 (38%), Gaps = 27/443 (6%) Query: 88 VYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKK 145 + D P+ I + + + ++ Sbjct: 41 IKDTPFDMVITDMKMPDLTGIDILRKCKEISPNTIVVVITAFGSIENAVEAMKLGAFNYL 100 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG---IATRNPHFNRMIEQIEK 202 +P P + I + ++ RQQ I +P +++ + + Sbjct: 101 IKPFSPDTIEAIIEKAKEHLSLVQENQYLRQQVSTGDSRNHFQIIGESPIMKQILRDVTR 160 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA +S A + +NG +G GK +A+ I F++VNCA + S FGH Sbjct: 161 VA-QSNASVFINGESGTGKEVIAQAIHANSARSQ---FPFIKVNCAAIPETLIESEFFGH 216 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA R G A+ G L LDEI E+ QA LL+AI+E+ F G + + Sbjct: 217 EKGAFTGANFKRLGRFELAHKGTLLLDEITEIPLAVQAKLLRAIQEQEFERVGGSKPIKV 276 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D +LI+ + RD++ +A REDLY R+N+ LP LR R EDI P Y +E+ Sbjct: 277 DVRLISTSNRDMKDAIAHKILREDLYYRLNVVPIYLPPLRDRPEDILPLAHYFLEKMCME 336 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 + F+ E+ + + +A W GN REL+ V R T+ IT + + I Sbjct: 337 NHKQAKTFSKESIKKLVGYA------WPGNVRELANIVERAVVMTTNSEITPEHL--YIE 388 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 N S L+ ++ +I + + ++ +S Sbjct: 389 NNHPNLPLRTASTLSQNTLTSLPVGMTLQELEKRLIIETLQAQHNNRTKTAEVLGIS--- 445 Query: 502 KASVNDADRLRKYLARFGLTWEA 524 LR L + + E Sbjct: 446 ------VRTLRNKLNEYNMKNER 462 >UniRef50_B5JH96 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH96_9BACT Length = 515 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 104/459 (22%), Positives = 178/459 (38%), Gaps = 70/459 (15%) Query: 111 HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTII-DLDLSRYNAIAS 169 H+ + + QI ++ +P +V I + +S + S Sbjct: 73 HMRSASSSLQIVLMTAFGTAQTAIEAMKFGAYDYIMKPFDVDKVIEIAEKAISSSQDLKS 132 Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 E++ D K GI +P + + I +VA S A +L+ G +G GK +A+ I Sbjct: 133 ANRYEKKVNYDDYKEGIVGNSPAMQEVFKVIGQVAA-SDATVLVTGESGTGKELIAKCIY 191 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 + G FV VNCA + + S LFGH KG+FTGA R G + G +FLD Sbjct: 192 QHSLRS---GGPFVAVNCAAIPDNLIESELFGHEKGSFTGATTQRIGRFEQCDRGTIFLD 248 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIG++ Q +L+ ++E G + D ++IA T +DL ++V + +FREDLY Sbjct: 249 EIGDMALATQTKILRVLQEGEIQRVGGTETIKVDVRVIAATNKDLEKMVEDKEFREDLYY 308 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATW 408 R+N++ +P L++R+ED+ +D+ ++ V R + +A A +A+ W Sbjct: 309 RLNVFRIRVPSLKERKEDVPDIVDFMLQNLVKEKKARVTRVSPDALNALVAYG------W 362 Query: 409 RGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE-------------SRPSAL 455 GN REL V R A A I + + D I R + P Sbjct: 363 PGNVRELGNVVYRSAVVAQGDAILMKDLPDTIRGGRGEAPAAPVVSAASSQTSVAAPVEP 422 Query: 456 TALLGAEAENIDLFDR------------------------------------MQLEHVIA 479 A + + ++ + + Sbjct: 423 QASAAETDSKEEPVEAPLATSIPEPMPISLPAIYDKLYHELRERQEMRILTLIERQMIER 482 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + A ++ ++R + L+K L + Sbjct: 483 AIGETGGNQARAAEILGITR---------NTLKKRLDEY 512 >UniRef50_Q1IRB0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRB0_ACIBL Length = 458 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 103/486 (21%), Positives = 179/486 (36%), Gaps = 33/486 (6%) Query: 41 IDRLELLHDARS--RSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARG 98 +D + L+ D L L+R +V P V ++L Sbjct: 1 MDCILLVEDKADLREMLTTALQRMGYAVLPSANVNEALVDLAK--------QRFSAVLTD 52 Query: 99 YEFQPEKEDYLIHITTG-THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV-TI 156 + ++ + + +++ ++P + + Sbjct: 53 LKLPGGSGMDVLSAALDSDPMVPVVVMTAFGTIADAVEAMRAGAFDFIQKPIDLTHLKLL 112 Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 ++ + R + + I +P +++++A S + +LL G Sbjct: 113 LERAVERQRLMRDNVVLREEYARKMGFPRIIGEHPTMQNSAREMQRIAG-SDSTVLLLGE 171 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK AR I +L Q FV +NCA + + LFGH KGAFTGA + G Sbjct: 172 SGTGKELFARAIHQLSIRSTQ---PFVALNCAAMPEGLIENELFGHEKGAFTGANTRKSG 228 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 AN G +FLDEIGEL + Q+ LL+ +EE GS + D +++A T R+L Q Sbjct: 229 KFEMANRGTIFLDEIGELPLNLQSKLLRVLEEHVVERLGSTMPLQLDVRVVAATNRELEQ 288 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARR 395 V G FR DLY R+ ++ +P LR+R ED+ ++ + + +A Sbjct: 289 AVEAGAFRRDLYYRLAVFPIRIPPLRERGEDVILIAEHFLAHFRQELKKPRLSLAPDALA 348 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL 455 A A W GN REL ++ R A + +T + N ++ Sbjct: 349 ALRA------HLWPGNVRELQNTIERAAILHDTE-VTAADLGLSANLRSAAAVSLGEHSI 401 Query: 456 TALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 + ++ + A R+ K +A + +S L + Sbjct: 402 DMGGSLPEVSAQASRTIEKAKIEATLRECKWNKSAAAERLGIS---------YKTLLTKI 452 Query: 516 ARFGLT 521 +GL Sbjct: 453 HGYGLD 458 >UniRef50_B1ZR63 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZR63_OPITP Length = 490 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 116/467 (24%), Positives = 189/467 (40%), Gaps = 41/467 (8%) Query: 86 EEVYACLHDFARGYEFQPEKEDYLIH-ITTGTHVAQICWFLLAEARYLPAR-LIQSSPPR 143 ++ D P+ + + + A +++ Sbjct: 41 AQLQREQFDLMMLDIRLPDGDGQKFLEQVAAMPERPLVVMVTGYGSVESAVGCMRAGAFD 100 Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P P ++ +I Y + R + + + R+P R+ + IE+V Sbjct: 101 YVLKPFSPSQIDVILKKAQTYRQLL-RVNRLLSDDPEDEEGILVGRSPAMIRLRQIIERV 159 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A + A +L+ G +G GK +AR R Q F++VNCA + + S FGH Sbjct: 160 A-PTDATVLITGESGTGKEMVAREFYRRSPRRSQA---FIKVNCAAISENLIESEFFGHE 215 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 +GAFTGA E REG A+ G L LDE+ E+ A+ QA LL+ ++E+ F G R + + Sbjct: 216 RGAFTGATERREGRFELAHQGTLLLDEVSEIPANLQAKLLRVLQEREFERVGGSRTIKVN 275 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 ++IA + RDL + V +G+FR+DLY R+N++ +P LR+R EDI D+ + R A Sbjct: 276 VRIIATSNRDLMRHVEKGEFRQDLYYRLNVFPVHVPALRERPEDIALLADHFLRRFARKH 335 Query: 384 GDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR--------ITLD 434 G V F AR A + + W GN REL +V R + +GR + D Sbjct: 336 GVKVTGFADSARAALIGY------RWPGNVRELQNTVERAVILSETGRAVTAAALGLPGD 389 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDL----------FDRMQLEHVIAICRQA 484 + E+ E + A+ A D ++ + + A RQ Sbjct: 390 FLPGELPLEPAPAPEVPALPVAAVAEEPAGASPTVTDSHGQVLKLDELEKQAIRAALRQT 449 Query: 485 KSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 +S LR L + L + V +S Sbjct: 450 GGNRTQAAAELGIS---------IRTLRNKLQEYRLAGDPVDADFAS 487 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 117/480 (24%), Positives = 215/480 (44%), Gaps = 39/480 (8%) Query: 53 RSLFETLKRDIASVSPETEVVSVEIELHNPWDF--EEVYACLHDFAR----GYEFQPEKE 106 + + E ++ + V+ + + V L N + EE+ + Q Sbjct: 12 KDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCDACKLLRQASSG 71 Query: 107 DYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNA 166 + V + C + + Y+ +++++ +Q + G V I+ D+S + Sbjct: 72 AWCRLFERKEQVKRKCHLMRKDGSYIT--VLKTAAVLSDDQGQTMGAVEIVT-DISEMDR 128 Query: 167 IASRFAEE-RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 + + + R + GI + + E +EK A +S P+ + G +G GK +A Sbjct: 129 LDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEK-AAQSDFPVFICGESGTGKELVA 187 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 + I L +++VNCA L S LFGHVKGAFTGA + R+G +A+ G Sbjct: 188 QAIHNLSPR---AEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGD 244 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 +FLDEIG+L Q LL+ +E KTF G +R +S D + I T ++L L+A G FRE Sbjct: 245 IFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFRE 304 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSP 404 DL+ RIN+ LP LR+R+ED+ +D+ ++R + +++ + EA R ++ Sbjct: 305 DLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFM------ 358 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAE 464 Q +W GN REL +++ A RI + + + + ++Q A Sbjct: 359 QYSWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPA------- 411 Query: 465 NIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + + Q + +I +Q+ + +L ++R + + ++G+ + Sbjct: 412 --ENLQQRQKQELIEALKQSSGNKSQAARLLGINRV---------TVLNRMRKYGIDLQR 460 >UniRef50_B6WRE4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WRE4_9DELT Length = 521 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 114/484 (23%), Positives = 182/484 (37%), Gaps = 31/484 (6%) Query: 48 HDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKED 107 + + + V I+ P V A R +K+ Sbjct: 64 LNPAEQRRGHYALGEG--------VTGRVIQSGQPMVVSNVSASPIFLNRTRSRDLQKDT 115 Query: 108 YLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL--SRYN 165 ++ L + + A ++ ++ R Sbjct: 116 IAFICVPIKFEDEVLGALSVDRVFADAVTLEEDERILTIIASMIAHAARARQNVMDERVA 175 Query: 166 AIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 AI + G + + EQI +VA S +LL G +G GK A Sbjct: 176 AIEENMRLRNALSAPLRPHGFVGNSDAMRLVYEQISQVA-PSSTTVLLYGESGTGKELAA 234 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 I + G F+ +NCA L + S LFGH KGAFTGA R+G A+GG Sbjct: 235 HAIHSAGKRS---KGPFISLNCAALPENLIESELFGHEKGAFTGASGIRKGRFELADGGT 291 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDE+GEL QA LL+ ++E+ F G +S D ++I T RDL ++V EG FR Sbjct: 292 LFLDEVGELSLLTQAKLLRVLQERCFERLGGTESLSVDVRIITATNRDLARMVEEGTFRR 351 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSP 404 DLY R+N++ +P LR+RQ DI+P Y V+++A+ G S +R + Sbjct: 352 DLYYRLNVFPIHMPPLRERQNDIQPLAAYFVDKYAAANGRSGIRISLAVMDML------Q 405 Query: 405 QATWRGNFRELSASVTRMATF-ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEA 463 + TW GN REL + R G I + E++ + + A Sbjct: 406 RYTWPGNIRELENVMERAVLLVGQDGLILPQHLPRELHSTHCPFGPAAHKGPVEPYAASG 465 Query: 464 ENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 D D ++ + + K Q ++ + A + + G+ ++ Sbjct: 466 TLQDRLDELERACITDALARHKGHMGHAAQALGLTERVMAL---------RMKKHGINYK 516 Query: 524 AVQD 527 + Sbjct: 517 DFRQ 520 >UniRef50_C6MX44 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter sp. M18 RepID=C6MX44_9DELT Length = 460 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 102/474 (21%), Positives = 179/474 (37%), Gaps = 31/474 (6%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH--ITT 114 E R + + E +V + + D P + + + Sbjct: 10 ELSMRLGLAYTLEAAGYAVTAAERGDEGIDLIGKQRFDVVVTDMRLPGADGLEVLKAVRK 69 Query: 115 GTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD-LSRYNAIASRFAE 173 + ++ +P P + + L + + Sbjct: 70 AQPDTGVVVITGYADVQTAVEAMKLGAFDYIAKPFEPAHLLSLVERFLCQTAHVEDSQRL 129 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 + I + +P + I ++A K+ + +++ G +G GK +A + Sbjct: 130 REEVAEHQRFEEIVSNSPSMLSVFNLI-QMAAKTDSSVIIYGESGTGKELVANAVHN--- 185 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 + F++VNCA + + + + G+ KGAFTGA + ++G L +A+GG F DEIG+ Sbjct: 186 RSPRLDKPFIKVNCAAIPENLLEAEMCGYEKGAFTGALQRKKGKLETADGGTFFFDEIGD 245 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 + QA LL+ +E ++F G V D + I T+R L + +GKFREDLY RIN+ Sbjct: 246 MSFPLQAKLLRVLETRSFERVGGTEPVHVDIRFIFATMRRLPDEIRKGKFREDLYYRINV 305 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNF 412 TLP LR+R +DI L + V G V EA ++ + GN Sbjct: 306 LPITLPPLRERADDIPLLLHFFVAHFCRKQGRQVLDIAPEAMELLRSY------PYPGNV 359 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 REL +V TF + IT + EI Q R G Sbjct: 360 RELKHAVEMAVTFCSDRVITPSCLPGEIREGSPALQGWR--------GDAGALESSRKET 411 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + + +I + ++ A + +SR + L + L + + +A+ Sbjct: 412 ERQTIINVLKKTGGRKMAAAKALGISR---------ETLWRKLKEYNVDTDAID 456 >UniRef50_B4D0Z8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0Z8_9BACT Length = 466 Score = 499 bits (1286), Expect = e-140, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 156/402 (38%), Gaps = 25/402 (6%) Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ 176 + + ++ +P E+ + ++ RQ Sbjct: 72 PQTPVILITAYKTVETALEAMKLGAYDYITKPFKVDELQLTIQRALDNQSLVRENRNLRQ 131 Query: 177 -QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 + I + + I KVA + + IL+ G +G GK +AR + + Sbjct: 132 IVKEKYRFENIIGTSTKMQEIYNLIAKVA-DTDSTILIQGESGTGKELVARALHFNSTRQ 190 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 HQ FV +NC+ L + S LFGH KG+FTGA + + GL A GG +FLDE+ + Sbjct: 191 HQ---PFVAINCSALPENLLESELFGHKKGSFTGAVQDKIGLFEEAEGGTIFLDEVNSMA 247 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 Q LL+ ++E+ G + V + +++A T L + G FREDLY R+ + Sbjct: 248 QPLQTKLLRVLQERQIRRVGDTKSVPINVRVLAATNEALGDKIKGGNFREDLYYRLAVIP 307 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRE 414 +P LR+R +DI + + ++++A+ TG + + +A + W GN RE Sbjct: 308 VEMPALRERPDDIPLLVSHFLQKNAAQTGTEAKKIDPKAIEML------AKYRWPGNVRE 361 Query: 415 LSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQL 474 L +V R I + ++ R + P + L + + Sbjct: 362 LENAVERACALCDDALIRTTDLPPQVIR----HATAPPVEHSGTLPVGQTLDEYIREQER 417 Query: 475 EHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 ++ + + ++ +S L + L Sbjct: 418 RYIEETIKFNGNSREKAAKMLGIS---------MATLYRKLE 450 >UniRef50_C8R0P5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=C8R0P5_9DELT Length = 456 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 104/495 (21%), Positives = 182/495 (36%), Gaps = 48/495 (9%) Query: 32 CLCQQESLVIDRLEL--LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVY 89 L + L + +L L A + R+ A + + +L P Sbjct: 8 ILVIDDDLRMRQLLRDTLASAGFTAELCADGREAAQLLQSRSFNVILTDLQMPH------ 61 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 + L + + I+ ++P Sbjct: 62 -------------FSGIEILEQALAANPDSMVVLVTGHGTVESAVEAIKKGAYDYIQKPF 108 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 P E+ + + + + +QQ + +P ++ E I +VA Sbjct: 109 EPDELLLTVQRATEHARLRQENRRLQQQVAGCRGDELVGESPPLKKLKELIAQVA-PFST 167 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+NG TG GK A+ I + + F+ +NC L S LFGHVKGAFTG Sbjct: 168 TVLINGETGTGKELAAKLIHKWS---GRHKQPFLAINCGALPETLLESELFGHVKGAFTG 224 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + + GL + + G LFLDEI + + Q LL+ ++E TF G + +D ++IA Sbjct: 225 ADQDKPGLFETVDQGTLFLDEIDSMTLNFQVKLLRVLQEGTFLKVGGRQPCRADVRVIAA 284 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 + R L + VA G FR DL+ R+N+ + LP LRQR+EDI + + ++ + V+ Sbjct: 285 SSRPLSEGVAAGSFRRDLFYRLNVVSLELPPLRQRREDIPLLAHHFLAKYNAKYDKQVQT 344 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 +W GN REL +V R F + + + E Sbjct: 345 IPAPV-----ITRLLDHSWPGNVRELENAVERALLFCPGQELQAEHLPP---------LE 390 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 + A+ M+ + +I ++A +L +S Sbjct: 391 TGGEEAELHTTADDAKSLTMASMEKKLIIKALQRANGHRGKTAELLGIS---------PA 441 Query: 510 RLRKYLARFGLTWEA 524 L + + ++ + + Sbjct: 442 SLWRKIKKYEINTPS 456 >UniRef50_B8F9K7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9K7_DESAA Length = 464 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 116/487 (23%), Positives = 201/487 (41%), Gaps = 32/487 (6%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE 100 + R + A + ++ T VV+ + + + D Sbjct: 1 MSRDLTILVADDDRTTTAILKNTLEKQSLTPVVAND----GIQALKILEETPVDLVIADY 56 Query: 101 FQPEKEDYLIHITTGTHVAQI--CWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIID 158 P + + + I + + ++ +P P ++ ++ Sbjct: 57 QMPGLDGFELLQAMKDRGMDIPFVMVTAHGSVDMTMNAMRLGAIEYLVKPVDPLDIVVLV 116 Query: 159 LDLSRYNAIASRF-AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 N + SR +++ + + I ++P + E I K A KS A +L+ G + Sbjct: 117 EKTLNINRMKSRLSRLQKEVEKKYHFTNIVGQSPQMQILFESIHK-ASKSTANVLITGES 175 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK A+ + + G FV VNC+ T S LFGHVKGAFT A G Sbjct: 176 GTGKELAAKAVHYNGPLKE---GPFVAVNCSAFSSGTLESELFGHVKGAFTDAHRDHMGR 232 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 AN G LFLDE+G++ AD Q LL+ +++KTF G+ + SDF+L+A T RDL+ L Sbjct: 233 FELANKGTLFLDEVGDIPADIQVKLLRVLQDKTFERVGAQEPIHSDFRLVAATNRDLKDL 292 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAW 397 V +GKFREDL+ R+N+ T P LR+ EDI + + ++R+ + G S++ + Sbjct: 293 VRKGKFREDLFYRLNVIGMTTPALREHPEDIPLLISHFLKRYGQVGGRSIKTLS-----M 347 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 A + W GN R+L ++ A I + EI + + Sbjct: 348 HAMKIMQEYRWPGNVRQLENAIESAAAMCDGSMIRTADLPLEITAPQSEDPLREDAYRGT 407 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 L ++ +R++ ++ Q + + A + VS + + +A Sbjct: 408 LP-------EVVERIEKHMILRALEQNQWVKAHAARTLGVSERVVS---------YKMAN 451 Query: 518 FGLTWEA 524 +GLT + Sbjct: 452 YGLTKDK 458 >UniRef50_C6W352 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W352_DYAFD Length = 693 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 113/516 (21%), Positives = 188/516 (36%), Gaps = 47/516 (9%) Query: 17 AGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVE 76 + +R R ++ V R L + S++ E V + Sbjct: 215 TSKTLERLFNTRISVLYLLDTDQVTLRPYLYDRQFFQETEVAENEAFYSLNINEEHVKLV 274 Query: 77 IELHNPWDF---EEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLP 133 E P E + A + E Y + G + W L + Sbjct: 275 FESSQPVLLDIDENLEAKCLKLSIQRELSGFNRVYASALRLGEQKLGMVWMLGDQVSGPI 334 Query: 134 ARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHF 193 + I + ++ + L N +Q L+ I Sbjct: 335 LQGICAQISTAVSNVLANEQILRLQKQLEDEN-------HYLKQQLNKDFEEIVGGGEAM 387 Query: 194 NRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGD 253 ++ I VA S A +LL G TG GK +A+ + + + ++VNCA + Sbjct: 388 QQVYRLISLVAE-SNATVLLLGETGTGKELIAKAVHHTSARKDKL---MIKVNCAAMPAS 443 Query: 254 TAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYP 313 S LFGH +GAFTGA E R G AN LFLDE+GE+ + Q LL+ ++EK Sbjct: 444 LIESELFGHERGAFTGAVERRIGKFELANNSTLFLDEVGEMPMETQVKLLRVLQEKEMER 503 Query: 314 FGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLD 373 G + + ++IA T RDL V G+FR DLY R+N++ LP LR R+EDIE Sbjct: 504 VGGKTTIKLNVRIIAATNRDLEAEVKAGRFRSDLYYRLNVFPINLPPLRDRREDIESLAG 563 Query: 374 YEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT 432 + + + + G V+ + A R A+ W GN REL + R AT I Sbjct: 564 FFLAKFSKSIGKKTVKLSANALRQLQAYL------WPGNVRELEHLIERSVILATDPMIR 617 Query: 433 LDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA--- 489 + + ++ ++++ H+I + R+ + Sbjct: 618 EFFLPQ--------------ATGATTDEHTMQSDLTLEQVERMHIIQVLRRCGGKISGIG 663 Query: 490 AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 ++ + + + + + G+T Sbjct: 664 GAAEILGIPG---------NTIHSKMRKLGITKAEY 690 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 108/469 (23%), Positives = 178/469 (37%), Gaps = 35/469 (7%) Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHV 118 R ++ VE + V D P + + + + Sbjct: 41 RATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMPTVDGMEVLRAVQQASPE 100 Query: 119 AQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE-ERQQ 177 Q+ I+ +P EV + + + Sbjct: 101 TQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLLRVAKALEKRRLLGEVNLFAEEF 160 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + I R+P +++++ +VA + A +L+ G +G GK +AR + + + Sbjct: 161 RKRYGLEHIVGRSPAMREVLDRVLRVA-PTDATVLVTGESGTGKELVARALHVTSRRSDK 219 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 FV VNCA + S LFGH +GAFTGA +R G+ ANGG LF+DEIGE Sbjct: 220 ---PFVPVNCAAITDTLLESELFGHARGAFTGATRARRGMFEEANGGTLFIDEIGETSPG 276 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 QA LL+A++E G V + ++IA T +DLR+ +AE +FREDL+ R+N+ Sbjct: 277 FQAKLLRALQEGEIRRVGESSPVQVNVRIIAATNQDLRRAIAERRFREDLFYRLNVVPLR 336 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 +P LR+R+ED+ + ++R TG EA + +A W GN REL Sbjct: 337 IPPLRERREDVPLLAAHFLQRFVQRTGSERVLTPEAVASLVA------HDWPGNVRELEN 390 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHV 477 + + A T I V+ E + GA D + + + Sbjct: 391 IIEQAAALCTGREIRAADVQIE-------------ARAAPAGGAGVTLADAVEDTERRAI 437 Query: 478 IAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 A + + + +S L + + R G+ Sbjct: 438 TAALARCGNDLGRVARDLGISG---------TTLWRKMKRLGIEAREHP 477 >UniRef50_B8FZI3 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FZI3_DESHD Length = 461 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 115/476 (24%), Positives = 205/476 (43%), Gaps = 22/476 (4%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 DR ++ D L ET R I + + E EE+Y D Sbjct: 4 DRHIVIIDDEPDML-ETCARVIHRMGYKCTTYEDSCEA-----LEEIYRLQPDLIITDIK 57 Query: 102 QPEKEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 P+ + + + T A++ + + ++ +P ++ + Sbjct: 58 MPQCDGFEVLEKAKVCTPKARVIVITGYASVDSAVQAMKEGAYDYLSKPFPIEQLQLTIN 117 Query: 160 DLSRYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 ++ A+ R Q I + E I K+ S A IL+ G +G Sbjct: 118 KALQHIALTEENQLLRAQLQEGLNTDNIIGARGGLQDVFETIGKI-SNSDASILILGESG 176 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR I + + +G F+ V+CA+L + S LFG+ +GAFTGA +++GLL Sbjct: 177 TGKEVIARAIHKNSRRS---TGPFIPVDCASLPENLLESELFGYERGAFTGANTTKQGLL 233 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 A+GG LFLDE+GEL QA LL+ +EE+ G +R ++ D +++A T RDL + + Sbjct: 234 EMAHGGTLFLDELGELTPAMQAKLLRTLEERAIRRVGGNRLINIDIRVLAATNRDLEKAI 293 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAW 397 +FREDLY RIN+ T LP L +RQ+DI +++ ++ + V F EA +A Sbjct: 294 RAKEFREDLYYRINVITLKLPVLHERQQDIPLLVNHFCKKFSQDMNKKVSGFTPEAMQAM 353 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 ++A W GN REL V R + + S + + + +++ + + + Sbjct: 354 KSYA------WPGNIRELRNVVERAISLSGSEMVEISDLPEKVIGGQKKILPEQENLGAF 407 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + R ++E++ + + + + R+ + + L++ Sbjct: 408 SFHEAKDI--CLKRFEMEYLKELLDKHHGNITQAAKSAGMDRKTIHRLINKYDLQR 461 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 19/342 (5%) Query: 186 IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEV 245 I ++ R++ I+K+ K+ L+ G +G GK +A+ I + F+ V Sbjct: 2 IIGQSIQIQRILTFIDKL-SKTDTTALIMGESGTGKELVAKMIHQKSSR---AEKPFIPV 57 Query: 246 NCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 NCA + + S LFGH KGAFTGA+ R G AN G +FLDEIG++ Q +L+ Sbjct: 58 NCAAIPSELLESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRV 117 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 I+EKTF G R + + ++IA T +DL V EG+FREDL+ R+N+ +P LR+R+ Sbjct: 118 IQEKTFERIGGTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERK 177 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI +Y + + + G S++ E + +L + TW GN REL + R+ Sbjct: 178 EDIPLLCEYFINKFSHKFGYSLQIKPEVMQIFLNY------TWPGNVRELENLIERLYVL 231 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 G I + + + I ++Q+ + + ++ + + ++ Sbjct: 232 NEGGNINIKDIPERIRFGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHG 291 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + + + +++R L + + R + +D Sbjct: 292 WIKSRAAKYLNINR---------TTLIEKMKRLNIKDNENED 324 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 99/491 (20%), Positives = 195/491 (39%), Gaps = 34/491 (6%) Query: 30 TLCLCQQESLVIDRLELLHDARSRSLFETLKR-DIASVSPETEVVSVEIELHNPWDFEEV 88 ++ + E ++ + S+FE D+ + + ++++ P Sbjct: 11 SILIVDDEKAARYGMKKILQRDHGSIFEATNGIDVLQKIHTLQPALIFLDINMP------ 64 Query: 89 YACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQP 148 Q + L I H + + + ++ +P Sbjct: 65 -------------QLDGLKTLEKIREMKHPPLVVIVTAHGSEKIAVEAMKKGAYDYIAKP 111 Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 E+ II + A+ R + + + ++ + ++IEKV Sbjct: 112 YEMEELRIITRNALEKIALQEENTRLRMEIGMLEGYGELLGQSKIMQEVFDRIEKVVTA- 170 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 +LL G +G+GK A I + + +G F+ +NCA + S LFGH +G+F Sbjct: 171 DVTVLLQGESGSGKELAAHEIH---RRSKRKNGPFIVMNCAAVPETLIESELFGHERGSF 227 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA E R G AN G + LDEIG++ Q+ LL+ ++E+ F G ++ D ++I Sbjct: 228 TGATERRMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRII 287 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS- 386 + T RDL + + EG+FREDLY RIN+ +P LR+R+EDI ++ ++ + + Sbjct: 288 SATHRDLEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNV 347 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 V + +A + A+ W GN R+L ++ + + + + ++I R Sbjct: 348 VSISNDAMKKLSAY------NWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKT 401 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 ++ + + + + + + + + + D+ RQ Sbjct: 402 PDSTKNVHYHLSFREAKKIL--IENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKI 459 Query: 507 DADRLRKYLAR 517 +L K + Sbjct: 460 KDLQLNKDIKE 470 >UniRef50_B9M610 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Deltaproteobacteria RepID=B9M610_GEOSF Length = 465 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 115/436 (26%), Positives = 187/436 (42%), Gaps = 29/436 (6%) Query: 94 DFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP 151 D P+ + I + ++ +P Sbjct: 55 DLLLQDVKMPDMDGLQILQEVKKLRPGLPVVIMTAFGTIDAAVEAMKLGAYDYVTKPFPK 114 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFLK-SGIATRNPHFNRMIEQIEKVAIKSRAP 210 ++ + ++ + + +++ I + F + E +VA S A Sbjct: 115 EKILGVLENVLERELLRKENQQLKEELGKVTLTDAIVFASDRFREVYELTLEVAA-SEAN 173 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 IL+ G +G GK +A I + R + + +NCA L S LFGHV+GAFTGA Sbjct: 174 ILILGESGTGKELIAGAIHRHSKRRGRRI---LSINCAALSDTLLESQLFGHVRGAFTGA 230 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 +++GLL A+ G LF+DEIG++ QA LL+ I+E F P G+ R D + +A T Sbjct: 231 TTNQKGLLEEADSGTLFMDEIGDMSLMLQAKLLRVIQEGDFIPVGATRAKKVDIRFVAAT 290 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RF 389 ++L + VAEG+FREDLY R+N+ + LP LR+R+EDIEP + + ++ V RF Sbjct: 291 NKNLEKEVAEGRFREDLYYRLNVISIPLPPLRERKEDIEPLARHFLRKYNQRMNKEVDRF 350 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 EA L + +W GN REL V R A SG +T D + + Sbjct: 351 TREALDLMLGY------SWPGNIRELENVVERAVILARSGVVTTDHLPMWKKNVASTAAT 404 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 SAL++ + + ++ EH+ + + ++ +SR+ Sbjct: 405 GPASALSSH------QLVSLENVEREHIRQTLARTGFHKSRTAEILGISRK--------- 449 Query: 510 RLRKYLARFGLTWEAV 525 L + +A FGL E Sbjct: 450 TLDRKIAEFGLKPEGE 465 >UniRef50_Q1NIP6 Response regulator receiver n=2 Tax=Deltaproteobacteria RepID=Q1NIP6_9DELT Length = 461 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 103/495 (20%), Positives = 191/495 (38%), Gaps = 42/495 (8%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIA-SVSPETEVVSVEIELHNPWDFEEVY 89 + + E + + L++L + + + A + + + + ++ P Sbjct: 4 ILVVDDELSMREFLKILLEEEGHGVCCAGDGEAALARLRQEDFDLLISDIRMP------- 56 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 P + L + + +++ +P Sbjct: 57 ------------PPNGLELLDQARQLQPELPVVLVTAFASPDDAVLAMKNGAFDYLTKPF 104 Query: 150 GPGEVTIIDLDL--SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 E+ I SR + + GI +P ++ E I +VA + Sbjct: 105 KVDEIKDIVSTALSSRRQLPEPTLKTNSEVPANGGFVGIIGNSPEMLKIYEVIRRVA-PT 163 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 +A +L++G +G GK +AR I +L A FV + C+ + S LFGH KGAF Sbjct: 164 QANVLIHGESGTGKELVARAIHQLSPAVQHQ---FVPIICSAIPESLFESELFGHAKGAF 220 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA +R GL AN G FLDEIGEL Q LL+ ++E+ G + +F++I Sbjct: 221 TGATTNRTGLFEQANYGTAFLDEIGELTPLTQTKLLRVLQEREIKRVGESVAIRINFRMI 280 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 + T RDL + VA G+FREDL+ R+ + +P LR+R+ D+ +++ + +++ L G + Sbjct: 281 SATNRDLEEEVAAGRFREDLFYRLAVVPIRVPPLRERKSDVPLLVEHFLAKYSRLFGKDI 340 Query: 388 R-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 R ++ A + + + GN REL + R S I + + R Sbjct: 341 RKISSYALELLMNY------DFPGNVRELENIIERGVAMENSQIILPESLTLTGRRHGGQ 394 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 + + + +I ++A + +L + S Sbjct: 395 PAPADDRGSLEADVFNRGLEPALTDFERQMIIKALQKAGNSKTRAAELLNTS-------- 446 Query: 507 DADRLRKYLARFGLT 521 LR + ++ + Sbjct: 447 -FRSLRYKIKKYEID 460 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 103/440 (23%), Positives = 178/440 (40%), Gaps = 27/440 (6%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIHITT-GTHVAQICWFLLAEARYL-PARLIQSSPP 142 + D P + G + + A ++ Sbjct: 40 VSRIGKEDFDMIFMDMKMPGMDGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAY 99 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIA-TRNPHFNRMIEQIE 201 +P P ++ ++ ++ + + R + KS ++N +++ EQ++ Sbjct: 100 DYIIKPFSPDQIELLISRVNERQKLIAENKYWRSASNVDEKSEPVYSKNSKMSQIYEQLK 159 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 K+A +S+A +L+ G +G GK +AR I F+ VNCA L S LFG Sbjct: 160 KIA-QSKASVLIQGESGTGKELVARAIHYFSPR---CEKPFIRVNCAALAESLLESELFG 215 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 H +GA+TGA R G AN G L LDE+ E+ + QA LL+ +EE+ F G ++ + Sbjct: 216 HERGAYTGAVAKRIGRFELANEGTLLLDEVSEISPNIQAKLLRVLEEEEFERVGGEKTIK 275 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS 381 D +++A T RDL + + +G FREDL+ R+N+ LP LR+R+EDI + +E+++S Sbjct: 276 IDVRIVATTNRDLAKEIQKGTFREDLFYRLNVVPIHLPPLRERREDIPLLANTYLEKYSS 335 Query: 382 LTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN 441 SV+ + A Q W GN REL + R +S + L+ I+ Sbjct: 336 ENNSSVKSIEK-----RAMDYLSQYNWPGNVRELKNIMQRAVVMGSSEELGLENFTSLID 390 Query: 442 RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQG 501 + S G + + E + + L ++ Sbjct: 391 IKKSEHTMCNDSVNIKKNG------QSIEDAEKELIFTTLEKTGGNKTKAAGLLKIT--- 441 Query: 502 KASVNDADRLRKYLARFGLT 521 LR L ++ + Sbjct: 442 ------TRTLRNKLNKYVIA 455 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 104/461 (22%), Positives = 192/461 (41%), Gaps = 31/461 (6%) Query: 84 DFEEVYACLHDFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSP 141 +++ +D P + + ++ + + ++ Sbjct: 38 GIQKIKTSRYDLVITDLRMPGSDGLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGA 97 Query: 142 PRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTL-DFLKSGIATRNPHFNRMIEQI 200 +P E+ + ++ A+ RQ+ F G+ +N +++E++ Sbjct: 98 HDYVTKPFPMDELLMTVDRATKVQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKV 157 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 + VA + A +L+ G +G GK +A I Q ++V+CA L + LF Sbjct: 158 KLVAT-TDATVLIFGESGTGKEVIANAIHRNSPRCGQA---LIKVSCAALPETLLEAELF 213 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH +GAFTGA + R G A+ G LFLDEIGE+ Q LL+ ++EK F G + Sbjct: 214 GHERGAFTGALKQRLGRFELAHKGTLFLDEIGEIAPMVQVKLLRVLQEKRFERVGGTETI 273 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 SD +L+ T ++L++ V G+FREDL+ R+N+ LP LR+R+EDI ++ ++R Sbjct: 274 GSDVRLVCATQKNLKEEVEAGRFREDLFYRLNVVQVALPPLRERKEDILVLAEHLLQRST 333 Query: 381 SLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA-TSGRITLDVV-- 436 S ++ F+ AR L + ++ GN REL ++ R A I + Sbjct: 334 SRVQRVMKGFSVAARDVLLHY------SFPGNVRELENAIERAVALAQEGDEIQAWDLCG 387 Query: 437 ----EDEINRLRYNWQESRPSALTALLGAEAENI-DLFDRMQLEHVIAICRQAKSLSAAG 491 L+ + + + ++ +R + E+++A+ + A Sbjct: 388 QTVCPFLGGPLQSGCGFCQEGVSNVTNARQTGTLAEVRERCEREYILAVLEREGWSRTAA 447 Query: 492 RQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 + +SR+ L + R+GL + SS Sbjct: 448 SKSLGLSRKA---------LWEKCKRYGLATPDTDEGDESS 479 >UniRef50_D2R262 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R262_9PLAN Length = 478 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 98/478 (20%), Positives = 186/478 (38%), Gaps = 32/478 (6%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 + +L +L + ++ +A V + + P V + Sbjct: 16 IRVLIVDNDTALAQAMEESLARVGYHCTIAT-----SGPEGVRRVQQDNFEIVITDLVMN 70 Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARYLP--ARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + + + + ++ +P +Q E+P P + + Sbjct: 71 DVDGMEVLARAKEALPEAEVIMVTGHATVPKAVEAMQQGAFNFLEKPITPTRLRAVAEKA 130 Query: 162 SRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + + E Q+ F GI + ++I++++++A + A +L+ G +G G Sbjct: 131 ADAVRLRQTNQELNQRLDERFGFEGIIFSSEKMKQVIDRLKRIA-PTDASVLITGESGTG 189 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A+ I + + + V +NCA + + S LFGHVKGA+T A R G Sbjct: 190 KELVAQAIHQNSPRKSKRI---VALNCAAVAENLVESELFGHVKGAYTDALNDRMGAFEY 246 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 ANGG LFLDE+G++ Q LL+ +EE G ++ + + ++++ T R L + Sbjct: 247 ANGGTLFLDEVGDMPLATQIKLLRVLEEHQITRVGDNKPIRVNVRMVSATNRALEDAIKA 306 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF 400 G FR DLY R+ + T LP LRQR+EDI P D+ + + + Sbjct: 307 GTFRADLYYRLKVVTVELPALRQRREDIVPLADHFRRQFIRRHHKPNKGISPVVSR---- 362 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN R+L ++ M T G + +D + E+ + S + L+G Sbjct: 363 -RLFSYDWPGNVRQLRNAIETMVVLDTDGILDIDDLPPELVDAEELRTPAIASGPSELIG 421 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 D ++ + + ++ + A L + L ++ Sbjct: 422 QP------LDNIERWAIEETLKLTSGNREEAARILGIG---------ARTLYRKLDKY 464 >UniRef50_B5Y7I9 Acetoacetate metabolism regulatory protein AtoC (Ornithine/argininedecarboxylase inhibitor) (Ornithine decarboxylase antizyme) n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y7I9_COPPD Length = 459 Score = 497 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 105/481 (21%), Positives = 175/481 (36%), Gaps = 47/481 (9%) Query: 19 RGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIE 78 R S+R K + + R + +SL D +E V+ Sbjct: 7 RVSKRSKKTNEKPVVLVADDEPSIRELVQTVLSQQSLEVVTASDGEEALKVSEAQVVDCA 66 Query: 79 LHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQ 138 L P+ + + + + ++ Sbjct: 67 L------------------VDIRMPKVDGLAVLEQLVLKNIPVIVITAYGTSDVTIEAMR 108 Query: 139 SSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIE 198 +P ++ Y+ + S + + + + Sbjct: 109 RGAYDFITKPFDIDDLAEKVRKALDYSKTTEVL---PIKGSKETSSLMVGMSAAMQEVYK 165 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 I +VA + +L+ G +G GK ++R I G FV VNCA + D S Sbjct: 166 LIGRVAS-TDVTVLITGESGTGKELVSRAIHYNSPR---NKGPFVVVNCAAIPEDLLESE 221 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFG+ KGAFTGA E + G AN G + LDEIG++ QA +L+ ++E G R Sbjct: 222 LFGYEKGAFTGADERKIGKFELANHGTILLDEIGDMSPMLQAKILRVLQEHVIERIGGTR 281 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 + D +++A T +DL+ LV G FREDLY R+N+ LP LR+R+EDI D+ +++ Sbjct: 282 SIPVDVRVLAATNKDLQSLVKSGSFREDLYFRLNVVQIQLPPLRERKEDIPLLADHFIKK 341 Query: 379 HASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 +A+ T V E A +A+ + GN REL + R + +TLDV+ Sbjct: 342 YAAETSKEVTGVTPEVMAALMAY------DYPGNVRELENIIARAVALCSGKVLTLDVLP 395 Query: 438 DEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 ++ + + ++ + A A L V Sbjct: 396 PQVVEPKPALRP---------------LKEVLLEAERRAFRQAVAVAGLDPQAVADLLQV 440 Query: 498 S 498 Sbjct: 441 D 441 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 95/484 (19%), Positives = 187/484 (38%), Gaps = 44/484 (9%) Query: 30 TLCLCQQESLVIDRLEL-LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEV 88 ++ + E + + L++ L D ++ + ++ + +L P Sbjct: 4 SILVLDDEKNIREGLQMALEDEGYEVFTAEDGNTGVEIALKGDIDLIITDLKMP------ 57 Query: 89 YACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQP 148 + E L H+ I + +P Sbjct: 58 -------------RMSGELVLQHVHAVLPDIPIIILTGHGTVENAVEAMHKGAYDFLTKP 104 Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEE-RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 ++++ + + + E +Q I +P N++ + ++K A S Sbjct: 105 LDLNRLSLLVRRALQNRELIVQHRELIKQIGNRTSFENIVGESPAMNKVFDMVKK-AAAS 163 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 +A +L+ G +G GK +A I L + + ++V+CA+ S LFGH +GAF Sbjct: 164 KASVLITGESGVGKELIANAIHNLSPRK---AKPLIKVHCASFAEGVLESELFGHERGAF 220 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA +G A+ G +FLDEIGE+ Q LL+ ++E++F G + D ++I Sbjct: 221 TGAVNRMKGRFELAHEGSMFLDEIGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVI 280 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 + T R+L + + FREDLY R+N+ +P LR+R+ED+ + ++ A G + Sbjct: 281 SATNRNLLEEIKRNLFREDLYYRLNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKI 340 Query: 388 R-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + +A+ A A+ W GN R+L + ++ I ++ + + I L Sbjct: 341 TSIDPQAQSALHAY------DWPGNIRQLRNCIESAVIMSSGPVIHIEDLSEPIRSLGET 394 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 P ++ + + E ++ K + + + R+ Sbjct: 395 SSIRIPIGVS------------MEDAEKEIILQTLEAQKGNKSKTADVLGIGRKTLYLKL 442 Query: 507 DADR 510 D Sbjct: 443 DQYT 446 >UniRef50_D0TB92 Two-component system response regulator n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TB92_9BACE Length = 455 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 101/408 (24%), Positives = 173/408 (42%), Gaps = 26/408 (6%) Query: 117 HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ 176 + + + L ++ E+P ++ + + + + Sbjct: 73 PNQVVVFITAFGSVSLAVDAVKKGAYDFIEKPFDNDKLLLTVSRAVEHCRMKGEIKHLKN 132 Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 + D +GI +++ Q+E+VA + A +L++G +G GK +A I + Sbjct: 133 KLGDMN-TGIIGEKSGLRQVMLQVERVAE-TDATVLIHGESGTGKELIAWAIHD---RSK 187 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 + S FV +NC + S LFGH KGAFT A+E++ G ANGG LFLDEIGEL Sbjct: 188 RVSQPFVAINCGAIPLTLMESELFGHEKGAFTDAKETQAGTFERANGGTLFLDEIGELPL 247 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 D Q LL+ +EE+ G + + + +++A T R+L + V GKFR DL R+N++T Sbjct: 248 DAQVKLLRVLEERKITRIGGKKAIPVNVRIVAATNRNLEEEVRLGKFRLDLLYRLNVFTI 307 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 LP LR+R+EDI + + +H SL S+ EA A+ W GN R+L Sbjct: 308 QLPPLRERKEDIPLLAAFFLRKHNSLLNLSIESITPEAMDQLCAY------DWPGNVRDL 361 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 +V +I + I + + A + D + Sbjct: 362 ENAVQSAMILCVDRQIHPGHLPARIKSYQMERLTAPQEA-----EEDTSLRDTNSLAEKA 416 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 +++ ++ + ++SR+ L + R+ L E Sbjct: 417 RILSALQKHNYNRTLTAEALNISRK---------TLFNKMKRYNLGNE 455 >UniRef50_B3E7V2 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfuromonadales RepID=B3E7V2_GEOLS Length = 466 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 122/419 (29%), Positives = 178/419 (42%), Gaps = 21/419 (5%) Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 F + T I + AR LP +P E+ + + Sbjct: 60 FARSGDALQQIWQTDPEQVAIVYAQSDAARTLPHD----ERLIFLPKPLNLDELESVVMR 115 Query: 161 LSRYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 Y A+ R E+ + FL S I R+ + E IEKVA S A +L+ G +G Sbjct: 116 ALEYQALKVRMPEQPVDEYPHFLCSTIIGRSRQMLNLFEMIEKVAESS-ATVLIQGESGT 174 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK AR I +L + FV VNCA + D S LFGHVKG+FTGA +R G Sbjct: 175 GKELAARAIHQLSSRSSKN---FVPVNCAAIPDDLLESELFGHVKGSFTGAYANRIGRFE 231 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A+ G LFLDEIG++ A Q LL+ ++ K F P GS R D ++IA + ++L + VA Sbjct: 232 MADKGTLFLDEIGDMKATLQVKLLRVLQAKEFEPVGSTRSQKVDVRIIAASNKNLDEQVA 291 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWL 398 FREDLY R+++ T+P LR R+EDI +++ + V+ F EA Sbjct: 292 TRDFREDLYYRLSVIPITIPPLRDRREDIPLLINHFQGQFNRDRRRLVKGFTREALEMLC 351 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 + W GN REL V RM T SG IT+D + ++ R + + Sbjct: 352 NY------DWPGNVRELENLVERMITMKESGFITVDDLPEKYLAPRTVVAPPLSVSGSVP 405 Query: 459 LGAEAE-----NIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 +G E D + ++ + L ++ R L+ Sbjct: 406 VGKELPPEGICLNSAVDAFENGLIMQALHRTGGNKKEAAALLNLKRTTLIEKLKKKNLQ 464 >UniRef50_C7PQF6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQF6_CHIPD Length = 1082 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 107/403 (26%), Positives = 173/403 (42%), Gaps = 41/403 (10%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-----FLKS 184 R+ L++ + I L N + EE+ + + Sbjct: 704 RHRDLHLLKGISDQVAVAVANILADEKIGQQLKEINGYKEKLEEEKLYLQQEISSVYTHT 763 Query: 185 GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVE 244 I P R+ + +V+ ++ +L+ G TG GK +AR I +++ V+ Sbjct: 764 DIIGAGPEMQRVFHMLSQVSFA-QSTVLILGETGTGKELIARAIHNGSPRKNKL---MVK 819 Query: 245 VNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLK 304 VNCA L + S LFGH +G+FTGA E R G AN G LFLDEIGE+ D Q LL+ Sbjct: 820 VNCAALPANLIESELFGHERGSFTGAIERRIGKFELANHGTLFLDEIGEMPLDLQVKLLR 879 Query: 305 AIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQR 364 AI+E+ G + +D ++IA T R+L++ VAEG+FR DLY R+N++ LP LR R Sbjct: 880 AIQEREIERIGGKSTIKTDVRIIAATNRNLQKEVAEGRFRSDLYYRLNVFPIVLPPLRDR 939 Query: 365 QEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 +EDI + +ER A TG +++ ++ A + A+ W GN REL + R Sbjct: 940 KEDISLLAAHFIERFARSTGRKNIKLSSTAMKQLTAY------NWPGNVRELEHVLERSI 993 Query: 424 TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQ 483 I + S A + E + D M+ ++++ + + Sbjct: 994 LLTQGNIIREIHL-------------SSQPKSEAKVRQEEDFSRTLDEMERDYILGVLNK 1040 Query: 484 AKSLS---AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 K ++ + L + + G+ E Sbjct: 1041 CKGKIFGPGGAAEILGLH---------VSTLNHRIRKLGIQKE 1074 >UniRef50_D2QLL9 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLL9_9SPHI Length = 875 Score = 496 bits (1277), Expect = e-139, Method: Composition-based stats. Identities = 124/526 (23%), Positives = 206/526 (39%), Gaps = 64/526 (12%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFE------TLKRDIASVSPETEVVSVEIELHNP 82 P + E + D LL R L E +++ TE V L + Sbjct: 376 PQVAAIINELMPFD---LLAVYRIGRLLESAAIDMAVQKQGGVFVAITEKDVVPQTLADQ 432 Query: 83 WDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLP--------A 134 +++ A + + ++ I + L + Y+P A Sbjct: 433 ASWKQALADMETWLVEPAINVGQQFVDIQQRSVVSRFYAEALGLKSSMYVPIFSKGKPIA 492 Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDL----------SRYNAIASRFAEER-----QQTL 179 LI +S P+ + I ++L R ++ +E+ + Sbjct: 493 ALILASKAAYAFTPKDLCTLQDISVELALALENLSAYERIKVLSEHLEQEKTYLAEEIKT 552 Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 I + + I +VA + +L+ G TG GK +AR + L R + Sbjct: 553 SHNFEEIIGTSSSMQTVFNAIGQVA-PTDYTVLIMGETGTGKELIARAVHSLSARRDR-- 609 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 V++NCA L S LFGH +G+FTGA E R G ANGG LFLDEIGEL + Q Sbjct: 610 -PVVKINCAALPAQLIESELFGHERGSFTGATEKRIGKFELANGGTLFLDEIGELPLELQ 668 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 A LL+AI+EK G + + ++IA T R+L+Q VA G+FR DLY R+N++ +P Sbjct: 669 AKLLRAIQEKEIERVGGKGVILINTRIIAATNRNLQQEVAAGRFRSDLYYRLNVFPIVVP 728 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+RQEDI P + +++ + G + A + Q W GN REL + Sbjct: 729 PLRERQEDILPLTMHFLQKISKKLGKPITNIANA-----SLQQLLQYPWPGNIRELEHVL 783 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 R + + S +TL + +A + +E + D ++A Sbjct: 784 ERSSILSQSATLTL-----------AEPLRAATTAFPPFVVQSSEEVKSIDDAMRLAILA 832 Query: 480 ICRQAKSLS---AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 ++ + +L ++ L + + ++ Sbjct: 833 ALAKSGNRIRGTGGAAELLNI---------KPTTLEARMKKLNISA 869 >UniRef50_B3E4S0 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Geobacter lovleyi SZ RepID=B3E4S0_GEOLS Length = 456 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 109/478 (22%), Positives = 181/478 (37%), Gaps = 50/478 (10%) Query: 48 HDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKED 107 D R R + + V +L P + + Sbjct: 26 ADPRFRVETAGSGAEALERLQHSPADIVITDLSMPL-------------------MDGIE 66 Query: 108 YLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI-IDLDLSRYNA 166 L I + I ++ + +++ +P V I LS A Sbjct: 67 LLSEIKSLYPQIFILILTSDDSTSQVVKAMKAGAYDYLLKPFDFEMVERSIATILSHKAA 126 Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 + + E + + ++ + E I +VA ++ A +L+ G +G GK +A Sbjct: 127 VQAGLCPECLSGEQYCFENLIGQDRKMFEIYEMISQVA-QTSATVLITGESGTGKELIAS 185 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I + + F+++NCA L S LFGH KGAFTGA ++GL A+GG L Sbjct: 186 AIHAKSTRKDK---PFIQINCAALTEGLISSELFGHEKGAFTGAVARKKGLFEQASGGTL 242 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIG++ Q LL+ +E TF G + +D +LI T RDL E +FRED Sbjct: 243 FLDEIGDISPTTQVSLLRILELGTFQRVGGTETIKADVRLICATNRDLAAAAREKQFRED 302 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQ 405 LY R+N+ + P LR R+ DI + Y +ER+ SL + +A + Sbjct: 303 LYYRLNVVSLQAPPLRDRRSDIPLLVRYFLERYCSLNNKQIDGVTRDAMTLLCNY----- 357 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 W GN REL+ + F+ + D + +I + + TA Sbjct: 358 -DWPGNCRELANIIEHAVIFSRGRTLDKDSLPSQIRTSDRHSSGLTLNLATA-------- 408 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 + + + ++ +L D++R L + ++ LT Sbjct: 409 --TLADAESALIKKVLEESNWNLKKAAELLDIAR---------GTLYGKMEKYHLTKP 455 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 97/440 (22%), Positives = 181/440 (41%), Gaps = 34/440 (7%) Query: 88 VYACLHDFARGYEFQ-PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKE 146 + + DF E + + + + ++I Sbjct: 172 LSGRIEDFFSNLRISNCMHEKKEVRGLYHQPCEGAHVLINSAPVFDSGKVIGGLAVE--- 228 Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVA 204 + E+ ++ +L++ + +E ++ D + + R+ ++I +K++ Sbjct: 229 --KDITEIVQLNQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKIS 286 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 + + A +LL G +G GK LAR I + F+ VNC + + S LFG+ Sbjct: 287 V-TEATVLLRGESGTGKELLARAIHQNSPR---HMNPFIVVNCGAIPNNLFESELFGYEG 342 Query: 265 GAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 GAFTGA + G+ ANGG LFLDE+GE+ + QA LL+ ++E TFY G + V + Sbjct: 343 GAFTGADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVN 402 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 +++A T R+L ++ +FREDLY R+N+ +P LR R+EDI + ++ Sbjct: 403 VRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKY 462 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL 443 +++ A TW GN REL +V R+ I + + + R Sbjct: 463 DKNIKKIEPAV-----MTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRN 517 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 Y + P + L+ + + ++ +Q + + ++ + R Sbjct: 518 TYISLVTSPVSQGKLMNVAV-------EAEKQLILKTLQQVRGNRSEAARVLGIPRS--- 567 Query: 504 SVNDADRLRKYLARFGLTWE 523 L L + G+ + Sbjct: 568 ------TLYYKLRQLGIPAK 581 >UniRef50_Q2LXW8 Nif-specific regulatory protein with sigma 54 interaction domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXW8_SYNAS Length = 513 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 126/533 (23%), Positives = 207/533 (38%), Gaps = 46/533 (8%) Query: 12 TVLDYAGRGSQRWSKWRPTLCLCQQESLV----IDRLELLHDARSR----SLFETLKRDI 63 L R + + R L QE + L D S + + Sbjct: 10 AALHAIARTLAQPGELRDQLERVLQEMNQRVGMQRGMISLLDRESGEVWLDVAHGVDIQG 69 Query: 64 ASVS--PETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP-EKEDYLIHITTGTHVAQ 120 VS P + + P + H R + + + + + Sbjct: 70 MEVSYQPGEGITGKVAQTGRPMAVANLGQETHFLDRTGARRFLNRSELAFLCVPIIYDNR 129 Query: 121 ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD 180 + L A+ + R+ E+ + + R ++ Sbjct: 130 VVGVLSADKAARQVEDLD----RELAMLSSISELIAKSVHIRALEEENRRLRHMLGRSTV 185 Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 S I + + I +VA S +L+NG TG GK +AR I + + G Sbjct: 186 PD-SEIIGHSRVMQEVFGLIAQVA-DSNTTVLINGETGTGKELVARAIHD---RSSRCKG 240 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 ++VNCA + S LFGH KGAFTGA +R G A+GG +FLDE+GEL A QA Sbjct: 241 PLIQVNCAAMPDTLIESELFGHEKGAFTGALHARRGRFEEAHGGTIFLDEVGELSAAAQA 300 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+ I+EK F P G+ R VS D ++IA T R+L + VA G FR DLY R+N++ LP Sbjct: 301 KLLRVIQEKKFQPLGASRVVSVDVRIIAATNRNLEEDVAVGHFRADLYYRLNVFPIYLPP 360 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+R DI DY V ++ + G SV R + A+L+ +W GN REL + Sbjct: 361 LRERGSDIILLADYFVLKYNKIMGKSVKRISNAVLEAFLS------HSWPGNVRELENCI 414 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 R AT I + + ++ A+ + + ++ Sbjct: 415 ERAVLLATGDSIETLHLPPSLQIRSREGEKKESGKFNAM----------IESQERAMIVD 464 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 +++ + ++ +++ ++ + +FG+ +H+ S Sbjct: 465 ALKESHGNQSQAARILGTTKRI---------IQYKIQKFGIDPRRFNPKHAGS 508 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 107/502 (21%), Positives = 192/502 (38%), Gaps = 29/502 (5%) Query: 20 GSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIEL 79 G+ R PT+ + ++ S+ +++ ++ D L +++ TE IE Sbjct: 3 GAGRVPCEEPTIPVAEKGSMSQEKVLIVEDEPHA--LTGLAELVSAWDYRTETARDGIEA 60 Query: 80 HNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVA-QICWFLLAEARYL-PARLI 137 E+V P + + + L A+ + Sbjct: 61 -----LEKVRGWQPAIVVTDLKMPRMDGMQLLERLNQMDGSRAVIVLTAQGSIESAVEAM 115 Query: 138 QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRM 196 + ++P + I ++SR + A R + G + + + Sbjct: 116 KIGAFDYLQKPVDSVRLRTILSNVSRQLEMQREMAATRTRLRSMSGLGLMVGTSQPMKDV 175 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 IE+VA + +L+ G +G GK +A+ + EL +++ FV VNCA + Sbjct: 176 FSLIERVA-PTNVSVLITGESGTGKELVAKTLHELSPRKNK---PFVAVNCAAIPETLIE 231 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S +FGH KGAFTGA E R G A G L LDEIGE+ QA LL+ +E++ + GS Sbjct: 232 SEIFGHEKGAFTGAIERRAGCFELAEEGTLLLDEIGEMPIGTQAKLLRVLEDRRYRRLGS 291 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + D +++A T ++ Q VA+G+ R DLY R+N++ +P LR+ +EDI + Sbjct: 292 KVETPIDVRVLAATNKNPDQAVADGELRGDLYYRLNVFNIHMPPLREHKEDIPAIAQRMI 351 Query: 377 ERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV 436 S ++ + +A W GN REL ++ R T R+ + Sbjct: 352 ADMTSKHDRAIEGMDDEMQA-----RLLSYDWPGNVRELRNTMERAVILCTGDRLQAQHL 406 Query: 437 EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 + + +A + E D + ++ + ++ Sbjct: 407 PPGF-GTARPLKTAAVTAEPPANAVQVEVGTTVDEAERLLILKTLESTHNNKTRAAEILG 465 Query: 497 VSRQGKASVNDADRLRKYLARF 518 +S L L + Sbjct: 466 IS---------LKTLHNKLKEY 478 >UniRef50_B3DYD7 DNA-binding response regulator, NtrC family (Contains REC, AAA-type ATPase, and DNA-binding Fis domains) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DYD7_METI4 Length = 486 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 105/487 (21%), Positives = 190/487 (39%), Gaps = 49/487 (10%) Query: 30 TLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSV--EIELHNPWDFEE 87 L + +E + L + R+ + + V + +I + E Sbjct: 23 ILIVDDEEDVFYSFQRFLEEFPVRTFSAKSGEEALKLLKTQAVDVIIMDIRMGKKSGLET 82 Query: 88 VYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQ 147 + F + ++ + Sbjct: 83 LKEIRKLF---------------------PQQVVVIMTAYGTCQTAIEAMKMGAYDYILK 121 Query: 148 PRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMIEQIEKVAI 205 P E+ + + + + + F I ++ ++ + I +VA Sbjct: 122 PFNMIELKSVITKALEASKLTKEVSSQAFPANAFDSRSLHIIGKSAPMQQVYKLIGQVA- 180 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 + A +L+ G +G+GK +AR I + + F+ +NCA + + S LFGH +G Sbjct: 181 PTNATVLIVGESGSGKELVARAIYQYSLR---ANKPFIAINCAAIPENLLESELFGHERG 237 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA R G +GG +FLDEIGE+ QA +L+ ++E F GS+ + +D + Sbjct: 238 SFTGAMAQRIGKFEQGDGGTVFLDEIGEMPISTQAKILRVLQEGEFSRLGSNEPIKTDVR 297 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT-G 384 +IA T +DL VA+ +FR DL+ R+N+ +LP LR+R EDI +D+ + +H Sbjct: 298 IIAATNKDLAAAVAKREFRADLFYRLNVVKISLPPLRERVEDIPDLIDHFLAKHRRYLPN 357 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 +++A R+ LA+ W GN REL + R ATS I + +EI Sbjct: 358 APTCISSQAMRSLLAY------HWPGNIRELENVIQRAMVLATSATIQNCHLPEEIQAAE 411 Query: 445 ------YNWQESRPSALTALLGAEAENIDLFD-RMQ-----LEHV-IAICRQAKSLSAAG 491 + P+ L E DL D R++ L + + + + + Sbjct: 412 KKKYFKEKSGKGGPAGGLDFLVQEIVGSDLRDHRLETLKSLLHRIYTQVLEECEGDESKA 471 Query: 492 RQLFDVS 498 +++ Sbjct: 472 KRILGFH 478 >UniRef50_B7RYB0 Sigma-54 interaction domain family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RYB0_9GAMM Length = 509 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 133/534 (24%), Positives = 220/534 (41%), Gaps = 39/534 (7%) Query: 1 MRKTVAFGFVG-TVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETL 59 M K V +VG LD G ++ P L ++ LL++ + + Sbjct: 1 MTKEVLVSWVGGNDLDAPGSAGEQLG---PILSTLL--DRPHAQVHLLYNYPTARVEPYG 55 Query: 60 KRDIASV----SPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTG 115 +A V + V ++L P + ++Y + + +KE + ++ G Sbjct: 56 DWLLAQVKERLGADILVDLHTVKLETPVHYGDIYQASNRLLGQLVNEFDKEQISVLVSPG 115 Query: 116 THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV--TIIDLDLSRYNAIASRFAE 173 T W LL + + +++QSSP P ++ I L+ +A R A Sbjct: 116 TPQMHAVWLLLCKTTF-KLQMLQSSPEGGVGDVDVPFDIAADFIPSLLAESDATLRRLA- 173 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 Q + I T++P I + +K+A + P+L+ G +G GK AR I E + Sbjct: 174 SGQTATPPAFTDIITQSPVLKAQIIKAQKIAER-DIPVLILGESGTGKELFARAIHEASR 232 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 + V VNC + + S LFGH KGAFTGA + + G A+GG +FLDE GE Sbjct: 233 RGGESGSELVSVNCGAISQELVDSELFGHKKGAFTGAEKDKAGYFEVADGGTIFLDEFGE 292 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L A+ Q LL+ + + TF G + D ++IA T RDL + EG FREDL+ R+ + Sbjct: 293 LPAETQVRLLRVLNDGTFARVGDTEERKVDVRVIAATNRDLMAEMVEGNFREDLFYRVAV 352 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASL-TG-----DSVRFNTEARRAWLAFATSPQAT 407 LP LR+R+ D+ D +E + G + + +AR Sbjct: 353 GVINLPPLREREGDLMLLTDKLLEGINNEALGLDPGYKHKKLSAKARNI------IKSHG 406 Query: 408 WRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENID 467 W GN REL AS+TR + ++ IT E E+ L L + + Sbjct: 407 WPGNVRELQASLTRASVWSGGETIT----EREMREALLERPAKAGDLLGRSLDNTFDIQE 462 Query: 468 LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 L ++ ++ + + + ++ + L K++ GL Sbjct: 463 LIKDLKKHYIKKALAENGNNKTKSAEKLGLN--------NYQTLNKWMEDVGLK 508 >UniRef50_Q0EZK3 Response regulator of hydrogenase 3 activity (Sensor HydH) n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EZK3_9PROT Length = 463 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 103/480 (21%), Positives = 186/480 (38%), Gaps = 28/480 (5%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L + L+ + V+ + + D + P+ Sbjct: 7 ILLVEDNEDFRLILQEALERSGFHVTAVANAMRAREAMTLGKF-----DLSLLDVRLPDG 61 Query: 106 EDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + I ++ ++P E+ + +L + Sbjct: 62 NGIELMREFRHSDPDMGIIIMTGYAEVDTAVDAVRLGANDFLKKPFDIDEMLVRIDELIK 121 Query: 164 YNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 I + R+ +G+ + P ++ E + +A S + +L+ G +G GK Sbjct: 122 TRQIKADNKNLRELVRSQDQNTGLIGQCPAIQKLTETVSLLA-NSDSTVLITGESGCGKE 180 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 LA+ + + V +NC + + S LFGHVKGAFTGA +R G AN Sbjct: 181 VLAKALHKSGSRS---GKPLVSINCGAIPEELLESELFGHVKGAFTGAVRARPGRFEIAN 237 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDEIG++ A Q LL+ ++E+ F P GS + + D ++IA T RDL +A G+ Sbjct: 238 GGTIFLDEIGDMSAKLQVKLLRVLQERCFEPVGSQQSIHVDVRVIAATHRDLEAEIAAGR 297 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FREDLY R+N+ TLP LR+R +DI D+ + R + ++ + Sbjct: 298 FREDLYYRLNVIPLTLPPLRERGDDILLLTDHFITRFNQQKKADITGVSDEVKR-----I 352 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL + R+ T G + L+ + + + +S + Sbjct: 353 ILNYQWPGNVRELQNLIERVTTLKRHGIMELEDLPSRMISDKERVLQS--FRMDVENAEC 410 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + D + +++ ++ + ++R L + + + GL Sbjct: 411 IDLKSTVDEFESHLILSALQRFQWNKNQAANFLAMNR---------TTLVEKIKKKGLQP 461 >UniRef50_B3DZA5 Transcriptional regulator NifA, contains GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DZA5_METI4 Length = 529 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 98/355 (27%), Positives = 161/355 (45%), Gaps = 32/355 (9%) Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 G+ ++ +++ + VA SR+ +LL G +G GK +AR I L + G F+ Sbjct: 194 GGVIGQSKQMQAVMDLVYHVA-PSRSTVLLRGESGTGKEVIARTIHYLSPRKE---GPFI 249 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +VNC+ L S LFGH KGAFTGA R+G A+GG LFLDEIG++ Q LL Sbjct: 250 KVNCSALPETILESELFGHEKGAFTGALFERKGRFELAHGGTLFLDEIGDISPAVQVKLL 309 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ F G ++ + D ++I T ++L + V +G+FR DLY RIN+ + +LP LR+ Sbjct: 310 RVLQEREFERVGGNKTIRVDVRVITATNKNLEEAVLKGEFRADLYFRINVVSISLPPLRE 369 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+EDI D+ + + +R EA + + W GN REL + R A Sbjct: 370 RKEDIPLLADHILNKIGKELNRKLRITPEALKLLIN------CHWPGNVRELENCLERAA 423 Query: 424 TFATSGRITLDVVE-------------DEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 T + + I V E+ + S + + L Sbjct: 424 TNSRNNWIDEIDVACRRNQCSSPMLWKKELQVISTPVVSSEEAKSREETPRSSFFSPLIS 483 Query: 471 RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 E +I + + A +L +++ +L L ++G+ + Sbjct: 484 DDPKEKIIQAMEKCGWVQAKAARLLNIT---------PRQLGYALKKYGIEIKKF 529 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 109/484 (22%), Positives = 192/484 (39%), Gaps = 43/484 (8%) Query: 27 WRPTLCLCQQESLVIDR-LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDF 85 +P L + + + +D +++L ++ + D + V ++ P Sbjct: 2 TKPKLLVVEDDKNTLDGLIQILRRDGYTAVGVSSGYDALNQLSRESFDIVITDMKLPG-- 59 Query: 86 EEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKK 145 L I I + ++ Sbjct: 60 -----------------MGGLSLLQEIKKKNSSIAIVVVTAYSSIKSAVNAVKHGADEYL 102 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVA 204 +P E+ ++ L + + +++ D + S + +P +R+ + IE VA Sbjct: 103 AKPVDVEELELVLEKLREKQQLVIQNRLLKEELKDKYTFSELVGGSPQMHRIFKMIEDVA 162 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 S A +L+ G TG GK +A I + FV ++CA L S LFGH K Sbjct: 163 -PSTASVLIMGETGTGKELVAHAIHY---RSERAGKPFVALHCAALSEGILESELFGHEK 218 Query: 265 GAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDF 324 GAFTGA +SR+G A+GG LFLDE+ E+ Q LL+ +E+ F G ++ + D Sbjct: 219 GAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVKLLRVLEKGEFERVGGEKTIKVDV 278 Query: 325 QLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE-VERHASLT 383 + IA T R+L + V+EG+FREDL+ R+N+ +P LR+R++DI +Y V+ Sbjct: 279 RCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPLRERKDDIPILSNYFAVKYAKKYK 338 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL 443 + F+ EA +A L+ W+GN REL ++ R S I++D + + I Sbjct: 339 KEIKGFDPEAIKALLS------HHWQGNIRELQNTIERAIVLCKSDTISVDHLPESIMPD 392 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 + T + E + + + ++ +S + Sbjct: 393 NEYIPVIKIPIGT-----------TLKEAEKEIIQRTLQITNGSKQSAAKILGISTRKIE 441 Query: 504 SVND 507 Sbjct: 442 YKTK 445 >UniRef50_Q306N7 PilR2 n=17 Tax=Deltaproteobacteria RepID=Q306N7_MYXXD Length = 474 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 106/452 (23%), Positives = 186/452 (41%), Gaps = 27/452 (5%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPP 142 +E+ A +D P+K+ ++ ++ + + + Sbjct: 41 LKELAARDYDVLLCDVRMPKKDGLVVLREALASHPALTAVVMSAYGSQEQALQAVAAGAF 100 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMIEQIE 201 ++P P E+ + + +Q +L G I +P + ++ Q+ Sbjct: 101 DYVQKPFKPDEIVFVLRKAEERERLVRENRRLKQASLPSTPGGHILGESPALHALLRQVA 160 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 ++A +L++G +G GK +AR + + +FV VNC + S LFG Sbjct: 161 RLA-PVDTTVLISGESGTGKELIARELHV---RSPRAPMSFVAVNCGAIPSGLIESELFG 216 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 H KGAFT AR ++ GL A+GG LFLDE+GEL Q LL+ ++E P G +R Sbjct: 217 HAKGAFTDARTAKRGLFAEADGGTLFLDEVGELPLAAQVKLLRVLQEGEIRPVGENRVEK 276 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS 381 + +++A T+RDL +LVA+G FREDLY R+N+ +P LR+R+ED+ + R Sbjct: 277 VNVRVVAATLRDLSRLVAKGDFREDLYYRLNVVNLRVPPLRERREDVPLLARAFIARFNR 336 Query: 382 LTGDSVR---FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 EA ++A W GN REL ++ R A I + + Sbjct: 337 ELNREPPVAGLTAEAEALLKSYA------WPGNVRELENAMERAVLLADEPHILPANLPE 390 Query: 439 EINRLRYNWQESRPSALTALL--GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 + +L G + ++ ++ A R+ K +L D Sbjct: 391 RLWAASPPGPHGEKPHGDPVLQGGGDLSLKRAIRELEESYIRAALRKTKGNRTRAAELLD 450 Query: 497 VSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 +S + L + +G+ +A ++ Sbjct: 451 ISHRA---------LLYKIKEYGIDPDAEAER 473 >UniRef50_Q1D245 Sigma-54 dependent DNA-binding response regulator MrpB n=3 Tax=Cystobacterineae RepID=Q1D245_MYXXD Length = 488 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 118/497 (23%), Positives = 191/497 (38%), Gaps = 31/497 (6%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVV-SVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 LL SL ETLK + + + V + P+ Sbjct: 4 LLIVDDDVSLLETLKMHFEEIEQDGQPRYQVATATSAAAGLRAAQEAMPSVVILDMMLPD 63 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR-GPGEVTIIDLDL 161 + I + A+I R +++ +P P + ++ Sbjct: 64 RTGLEIIEEMKGLCGDARIILVTAYHDMETTIRAMKAGAFDYIHKPFPDPAALDLVVERA 123 Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 Y ++ R E ++ I +P +++++I KV S A +L+ G +G GK Sbjct: 124 LEYRQLSRRADEVHRENAAARLGDIVGTSPLMQQLVKEIGKV-TGSHATVLITGESGTGK 182 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I + F+ +NC+ + S LFGH KGAFTGA + G A Sbjct: 183 ELIARVIHNYSYDEPR---PFIGINCSAIVDTLLESELFGHEKGAFTGATAGKPGKFELA 239 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 G +FLDEIG++ QA LL+ ++E+ F G +++ ++IA T R L + V G Sbjct: 240 EDGTVFLDEIGDMSLMLQAKLLRVLQEREFERVGGVKRIKLRARVIAATHRALVEEVEAG 299 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT-EARRAWLAF 400 +FREDLY R+ + T +P LR+R+EDI P + + +ER V E Sbjct: 300 RFREDLYQRLKVITLQIPPLRERREDIPPLVKHLLERINEKVHKRVTRVPGEVMERL--- 356 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA------ 454 + WRGN REL +TR A + D + + L SA Sbjct: 357 ---TRLPWRGNVRELENVLTRAVVLAPGDVLRGDDLPALESPLPSPEPGRATSAHHTASA 413 Query: 455 -LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 A +A I + + + + K Q+ +SR L + Sbjct: 414 MFAAPAEDDASLIPTLEEAERQLIARAMTVTKGHKGRTCQILGISRP---------TLER 464 Query: 514 YLARFGLTWEAVQDQHS 530 L ++GL H+ Sbjct: 465 KLQKYGLAQSQSPQVHT 481 >UniRef50_B4DAQ1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAQ1_9BACT Length = 987 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 108/384 (28%), Positives = 177/384 (46%), Gaps = 26/384 (6%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 + +++ D +R A + EE I +P +++ Q+++VA + Sbjct: 621 LDITDRVLMEQDKARLEAQNTYLQEE--IRSQHNFVEIVGNSPSLLQVLRQVDRVAS-TD 677 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 + +L+ G TG GK +AR I + R + V+VNC + S LFGHVKGAFT Sbjct: 678 STVLICGETGTGKELIARAIHDRSPRRER---PLVKVNCGAISTGLVESELFGHVKGAFT 734 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA +REG A+GG +FLDE+GEL + Q LL+ ++E+ F P GS + V D ++IA Sbjct: 735 GAIANREGRFELADGGTIFLDEVGELPPETQVKLLRVLQEQEFEPIGSTKTVKVDVRVIA 794 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV- 387 T RDL +V EGKFR DL+ R+N+ T+P LRQR DI + +E+ A G S+ Sbjct: 795 ATNRDLETMVREGKFRSDLFYRLNVVPLTMPPLRQRANDIPLLTMFFLEKFARKLGKSLG 854 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD--VVEDEINRLRY 445 + E Q W GN REL + R +T +T++ + + Sbjct: 855 QIAEETMARLC------QYPWPGNIRELQNVIERAVVLSTGSLLTVEKGALPGATGVMAQ 908 Query: 446 NWQESRP-----SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + +A A + + + ++ +H+ ++ +Q ++ + Sbjct: 909 GPGWTPERAMIDAAEPLSTPLGATSGNALEDVERQHIASVLQQTNW------RIEGANGA 962 Query: 501 GKASVNDADRLRKYLARFGLTWEA 524 K LR + + G+ A Sbjct: 963 AKILNLQPSTLRSRMQKLGIVRPA 986 >UniRef50_P71229 Hydrogenase-4 transcriptional activator n=45 Tax=Enterobacteriaceae RepID=HYFR_ECOLI Length = 670 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 107/438 (24%), Positives = 177/438 (40%), Gaps = 30/438 (6%) Query: 95 FARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEAR---YLPARLIQSSPPRKKEQPRGP 151 + LI +T G H + +L+Q R Sbjct: 255 LLLLLASNGCESALLIPLTFGNHTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNA 314 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 + + +E Q + I ++ +++Q++ VA KS + + Sbjct: 315 DAWRSMTDLQESLQQENHQLSE--QLLSNLGIGDIIYQSQAMEDLLQQVDIVA-KSDSTV 371 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G TG GK +AR I +L R + V++NCA + S LFGH KGAFTGA Sbjct: 372 LICGETGTGKEVIARAIHQLSPRRDK---PLVKINCAAIPASLLESELFGHDKGAFTGAI 428 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 + G A+GG LFLDEIG+L + Q LL+ ++E+ G R + + ++IA T Sbjct: 429 NTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATN 488 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FN 390 RDL Q+V + +FR DL+ R+N++ LP LR R EDI + ++ A ++ Sbjct: 489 RDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIP 548 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 TEA R ++ W GN REL + R + L + +RL E Sbjct: 549 TEALRQLMS------WDWPGNVRELENVIERAVLLTRGNSLNL-HLNVRQSRLLPTLNED 601 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVND 507 + +++ D + + ++ + R+ + A + R Sbjct: 602 S-ALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAGPRGAATRLGMKR-------- 652 Query: 508 ADRLRKYLARFGLTWEAV 525 L + R G++ V Sbjct: 653 -TTLLSRMQRLGISVREV 669 >UniRef50_B3QSR6 Transcriptional regulator, NifA, Fis Family n=2 Tax=Bacteria RepID=B3QSR6_CHLT3 Length = 557 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 96/350 (27%), Positives = 158/350 (45%), Gaps = 31/350 (8%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 + I + + I+K+A + A +L+ G +G GK +A I Q + Sbjct: 238 EQPANIIGNAKSMRVVFKMIDKIA-PTNATVLILGESGVGKELVANAIHYKSQR---AAS 293 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 F++ NCA L S LFGH +GAFTGA +R+G AN G +FLDE+GEL QA Sbjct: 294 PFIKFNCAALPESIVESELFGHERGAFTGASATRKGRFELANTGTIFLDEVGELSLSIQA 353 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+ ++EK F G ++ + +D ++IA T R+L + + EGKFREDL+ R+N++ T+P Sbjct: 354 KLLRILQEKEFERVGGNKTIKADVRIIAATNRNLEEEIQEGKFREDLFYRLNIFPVTVPP 413 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+R+ DI DY VE++ + G V R +T A + + W GN REL V Sbjct: 414 LRERKSDILLLADYFVEKYNQMNGKGVRRISTTAIDMLM------RYHWPGNVRELENCV 467 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 R + G I + + + D ++ E ++ Sbjct: 468 ERAVILSDDGVIHGYHLPPTLQTAESSGTPCA-----------GPLQQRLDALEYELIVE 516 Query: 480 ICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQH 529 + K + ++ + + +F + + + + Q Sbjct: 517 ALKNTKGNMSKAAMELGLTDRVMGL---------RVKKFDIDFRSFRSQR 557 >UniRef50_D0LLW1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLW1_HALO1 Length = 501 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 111/505 (21%), Positives = 187/505 (37%), Gaps = 43/505 (8%) Query: 18 GRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKR-DIASVSPETEVVSVE 76 GRG Q W + + + ES ++D L + + + + + V + Sbjct: 6 GRGQQLWDPSK-VVLVVDDESGIVDSLTKIFQREGLRVLGASDGAEGLELLRKHRVGVLL 64 Query: 77 IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARL 136 +L P D L T ++ + Sbjct: 65 TDLMMPHT-------------------TGMDLLKAAKTVAPETEVVLMTAYGTVETAVQA 105 Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRM 196 ++ +P V I + ++ R Q + + + + R Sbjct: 106 MKEGAYDFVTKPLKRAHVVRIVKNALEKQSLVVENRVLRAQLAEQRSRAVIGSSLAWRRT 165 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 ++ + + A S A +LL G +G GK LAR + E F+ +NCA + Sbjct: 166 MDIVHQ-AAPSDATVLLLGESGTGKELLARSLHEGSAR---ADKPFIAINCAAIPESILE 221 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 LFG+ KGAFTGA SREG +A+GG LFLDE+GE+ Q LL+ ++E G Sbjct: 222 GELFGYEKGAFTGATSSREGRFEAASGGTLFLDEVGEMPRHVQVKLLRVLQEGEIERLGG 281 Query: 317 D-RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 R D +LIA T +L + V EG+FREDLY R+N+ + +P LR+R++DI + + Sbjct: 282 SGRTRPIDIRLIAATNVELAKAVQEGRFREDLYYRLNVISIAVPPLRERRDDIPLLVQHF 341 Query: 376 VERHASLTGDSVRF-NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 ++ +A G + +A +A W GN REL +V R + + Sbjct: 342 LQVYADKNGKFMAGCTQDALDRLCRYA------WPGNVRELENAVERAVVLSRGEVLDEA 395 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + E+ E+ A +++ + R K +L Sbjct: 396 ALPFEVRSGEGALAEAA-GAGDPGGALRFAVGTPLAEIEMAVIHETLRHTKGDKRLAAKL 454 Query: 495 FDVSRQGKASVNDADRLRKYLARFG 519 + + + L G Sbjct: 455 LGI---------ATRTIYRRLEAEG 470 >UniRef50_C8QWL5 Transcriptional regulator, NifA, Fis Family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QWL5_9DELT Length = 539 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 109/459 (23%), Positives = 174/459 (37%), Gaps = 33/459 (7%) Query: 77 IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARL 136 + P + R + E+ L + Y Sbjct: 110 VASGAPIVVPRISEEPLFLDRTSARRSRGEELSFICVPIRRGPDTIGALSVDREYREGEE 169 Query: 137 IQSS-PPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFN 194 + V + L + ++ R+ + + S I + + Sbjct: 170 FEQDLRFLTILSGLVAQTVKRVQLVNQEQQRLEQENSQLRRELSEKYRVSSILSNSSRMQ 229 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 ++E I +VA S A +LL G +G GKS +AR + + +G F+ VNC+ L Sbjct: 230 EVLEMIHRVAA-SNATVLLRGESGTGKSMVARAVHHNSKR---AAGPFITVNCSALPETL 285 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH +GAFTGA E+R+G A GG LFLDEIGEL Q LL ++++ F Sbjct: 286 LESELFGHERGAFTGAHETRKGRFELAEGGTLFLDEIGELSTAVQVKLLSVVQDREFQRV 345 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G R + D +LI T +DL + VAEG FREDLY R+N++ LP LR+R+ DI ++ Sbjct: 346 GGSRPLKCDVRLITATNKDLEKAVAEGTFREDLYYRLNVFPIYLPPLRERRTDILLLAEF 405 Query: 375 EVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL 433 +E+ AS ++ R +T A Q W GN REL + R I Sbjct: 406 FLEKFASENDKNIRRISTPAIDLL------TQYHWPGNVRELQNCLERAVLICDEDTIKS 459 Query: 434 DVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + + + S + + + E +I ++ Sbjct: 460 YHLPPTLQSSDSLREVS-----------PSSFTAAVESFERELIIDALKKTDGNQTRAAA 508 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 L + + ++ + + SS Sbjct: 509 LL---------ETSLRIINYKIKKYAIEPRRYRVAAKSS 538 >UniRef50_B9XQY9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=bacterium Ellin514 RepID=B9XQY9_9BACT Length = 502 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 109/524 (20%), Positives = 196/524 (37%), Gaps = 74/524 (14%) Query: 41 IDRLELLHDARS--RSLFETLKRDIASVSPETEVV--SVEIELHNP-WDFEEVYACLHDF 95 + ++ L+ D + + + E L+ + V P T +E+H P ++Y Sbjct: 1 MAKVLLVDDELTMVQMVTEMLRAEGHEVFPYTNFKDAVAALEIHTPEIVVTDLYLDKTRA 60 Query: 96 ARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 Q + T A + + +++ E+P E+ Sbjct: 61 HGLEILQK--------ARSITPPASVIVITAFGSIETAVEAMKNGAYDYLEKPFKLDELN 112 Query: 156 I-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 + I LS AI+ ++Q + S I + + IE+ A + + IL+ Sbjct: 113 LCIQRALSYNEAISENLYLKKQLKKKYQFSQIIGTAGPMQEVFKMIERTA-DTDSTILIL 171 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +AR + + F+ VNC+ L + S LFGH KG+FTGA + Sbjct: 172 GESGTGKELVARALHFNSKR---QFAPFIPVNCSALPENLLESELFGHRKGSFTGALTDK 228 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 +GL + A+GG +FLDEIG + + Q+ LL+ ++E+ G + + +++A T L Sbjct: 229 KGLFQEADGGTIFLDEIGSMSSTLQSRLLRVLQEREVRRVGENVPTYINVRVVAATNEPL 288 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE-RHASLTGDSVRFNTEA 393 + + +G FREDLY R+N+ + +P LR+R++DI + + + +G SV+ +A Sbjct: 289 EKKIKDGTFREDLYYRLNVISIQMPSLRERRDDIPLLAAHFLRNKINPRSGQSVQITRQA 348 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP- 452 + W GN REL ++ R AT I + + + R + Sbjct: 349 LDLLTTY------DWPGNVRELENAIERAATLCEDNLIQIRDLPPSLVRSLGQPPSASTA 402 Query: 453 ---------------------------------------SALTALLGAEAENIDLFDRMQ 473 T L A+ D + Sbjct: 403 LSADVAQLPQPTTPPTSLVPIQTAIPGASAPLSVPNGTNPGATPTLHADLSLKDYLREQE 462 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 L ++ +S L + L+ Sbjct: 463 LAYLNRTLALFGGDKEKTALHLGIS---------LATLYRKLSE 497 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 114/426 (26%), Positives = 186/426 (43%), Gaps = 26/426 (6%) Query: 103 PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 P + A+ C E R +P +I+ + K + G V + Sbjct: 71 PADIHQCGILRHEQPEAKECVLRHREGRDVP--VIKQARVVKDDNGELIGIVETVTDMTE 128 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 A R + I ++ + ++ + A SR+ +L+ G +G GK Sbjct: 129 LQKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRV-RAAAASRSTVLIQGESGTGKE 187 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR I Q FV VNC+ L S LFGHVKGAFTGA R G A+ Sbjct: 188 LIARAIHYNS---DQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAH 244 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +FLDEIGEL Q LL+ ++E+ G + + D ++I T RDL +L+A+G Sbjct: 245 RGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGV 304 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FR+DLY R+ ++ TLP LRQR+ED+ +++ + + TG V EA R Sbjct: 305 FRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRL----- 359 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 + W GN REL ++ + +I ++ + EI R + + +R + + G+ Sbjct: 360 -VFEYHWPGNVRELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGS 418 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + ++ E ++A+ + AA + VSR KY+ ++G+ Sbjct: 419 RQHH----EQPDREQLLALLEANQWNKAAVARQLGVSRTAV---------WKYMKKWGIP 465 Query: 522 WEAVQD 527 + D Sbjct: 466 LQPEPD 471 >UniRef50_P27713 Nif-specific regulatory protein n=3 Tax=Burkholderiales RepID=NIFA_HERSE Length = 542 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 121/538 (22%), Positives = 195/538 (36%), Gaps = 48/538 (8%) Query: 17 AGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVE 76 G R L + L L + E Sbjct: 24 LGSSLDLSKTLREVLNVLSAHLETKRVLLSLMQDSGELQLVSAIGLSYEEFQSGRYRVGE 83 Query: 77 ------IELHNPWDFEEVYACLHDFARGY-EFQPEKEDYLIHITTGTHVAQICWFLLAEA 129 + P ++ AR + E ++ L Sbjct: 84 GITGKIFQTETPIVVRDLAQEPLFLARTSPRQSQDGEVISFVGVPIKAAREMLGVLCVFR 143 Query: 130 RY-LPARLIQSSPPRKKEQPRGPGEVTIIDL--DLSRYNAIASRFAEERQQTLDFLKSGI 186 P+R + G+ + R + RQ + + Sbjct: 144 DGQSPSRSVDHEVRLLTMVANLIGQTVRLYRSVAAERQQLQEEKRQLSRQLQGKYKLDNV 203 Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 + + Q+ + A SR+ +LL G +G GK +AR I L + G F++VN Sbjct: 204 IGISKAMQEVFAQVHQSA-PSRSTMLLRGESGTGKEVIARAIHYLSPRKD---GPFIKVN 259 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 CA L S LFGH KGAFTGA+ R+G A+GG LFLDEIGE+ QA LL+ + Sbjct: 260 CAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVL 319 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +E+ F G R + D +L+ T RDL + VA+G+FR DLY RIN+ + +P LR+R+E Sbjct: 320 QEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERRE 379 Query: 367 DIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 DI +++ +E+ + V + +A + + W GN REL V R AT Sbjct: 380 DIPYLVEHFLEKFRVENQRAMVAMSPQAMKVMMN------CYWPGNVRELENCVERTATM 433 Query: 426 ATSGRITLDVVEDE----INRLRYNWQESRPSALTALLGAEAENIDLFDR---------- 471 IT + + ++ + + +P + L A +F Sbjct: 434 MRGDLITEVHFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAPYGAIFAEWDGQGQATGA 493 Query: 472 ----MQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 + E +I Q + A + ++S + L +F + + Sbjct: 494 APPTSERERLIWAMEQCGWVQAKAARALNISPRQMGYA---------LQKFNIEVKKF 542 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 93/366 (25%), Positives = 159/366 (43%), Gaps = 30/366 (8%) Query: 159 LDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L +R A R E + + GI + + + IEK A S +L+ G +G Sbjct: 395 LKKTRGEAEFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEK-AAMSDGNVLIQGESG 453 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGL 277 GK AR I L + FV +NCA + + S LFG+ +GAFTGA+ + G Sbjct: 454 VGKEIAARTIHYLS---ERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGK 510 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 + A+GG LFLDEIG++ Q LL+ I+ + F GS+ D ++IA T + L +L Sbjct: 511 IEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKL 570 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF-NTEARRA 396 V EG+FR DLY R+N++ +P LR+R++DI ++ + + + +EA Sbjct: 571 VKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNI 630 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 + + +W GN REL + R A I + + ++ + + Sbjct: 631 LMNY------SWPGNIRELQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGER------- 677 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 + + ++ + +I + A +L + R L + + Sbjct: 678 --ITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRA---------TLYQKIK 726 Query: 517 RFGLTW 522 +G+ Sbjct: 727 EYGIEA 732 >UniRef50_B1ZMV8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Verrucomicrobia RepID=B1ZMV8_OPITP Length = 467 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 108/498 (21%), Positives = 190/498 (38%), Gaps = 48/498 (9%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEV 88 P++ + E + L+ + ++ + +L P Sbjct: 3 PSVLIVDDEKHTREGLQQALVDSYDVSLAASADEAFNLMDAQPFDVIVTDLRMP------ 56 Query: 89 YACLHDFARGYEFQPEKEDYLIHITT-GTHVAQICWFLLAEARYLPA-RLIQSSPPRKKE 146 K + + A A ++ Sbjct: 57 ---------------GKSGLKVIDKALAQPNRPAVLMMTAYGNIETAVEAMKRGAVDFLT 101 Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAI 205 +P + ++ + + + ++ + F GI +P + +I++++ VA Sbjct: 102 KPVNIERLEVLIQRALKAKTLEVEVKQLHERLDEKFSFEGIIGNSPKLHEVIDRVKLVA- 160 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 SRA IL+ G +G GK +A+ I + G F+ V+CA L + S LFGH +G Sbjct: 161 PSRATILIEGESGTGKELIAQAIHQSSSRSR---GPFLAVHCAALSENLLESELFGHERG 217 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 +FTGA E R G SA+GG LFLDEIGE+ A Q LL+ +E K+ G + + D + Sbjct: 218 SFTGATERRIGRFESADGGTLFLDEIGEISASTQVKLLRFLETKSIERVGGSKPIDLDVR 277 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG- 384 L+A T R L QLV +GKFREDL+ R+N+ T+P LR+R ED+ L + + + G Sbjct: 278 LVAATNRTLEQLVRDGKFREDLFFRLNVVRITMPPLRERAEDVPLLLGHYITAFSEENGV 337 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL- 443 + A A+ W GN REL ++ +E Sbjct: 338 PPLTIEPGALATLQAY------PWPGNIRELRNFCENAVVLRRGRSLSEYDLEPRYRDAT 391 Query: 444 ---RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + + + +LG + + + +++ +L +SR+ Sbjct: 392 LAGATGPAPTPGAPGSTVLGGAVPTSFSVEENEKRLLREALIKSRGNRTKAAELMGISRR 451 Query: 501 GKASVNDADRLRKYLARF 518 L + +A++ Sbjct: 452 ---------TLHRKIAQW 460 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 112/496 (22%), Positives = 200/496 (40%), Gaps = 51/496 (10%) Query: 31 LCLCQQESLVIDRLEL-LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVY 89 + E ++ LE+ L A + L R+ V +V V +LH P Sbjct: 8 ILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMP------- 60 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 + + L + + +++ +P Sbjct: 61 ------------RMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPF 108 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 E+ + ++ + R+ D G+ +P + E I +VA +A Sbjct: 109 DLAELELAIKRALSFSRLVVENRFLREDKADTT--GLIGNSPAMQHLAESIRQVA-PEKA 165 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +L+ G TG GK +AR I + FV VNCA + + S LFGH KGAFTG Sbjct: 166 TVLVAGETGTGKELVARAIHAASPRNNAL---FVAVNCAAIPHEMLESELFGHEKGAFTG 222 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + R G A+GG LFLDE+ E+ QA LL+A++E G +R ++ D +++A Sbjct: 223 AVKERIGKFELADGGTLFLDEVTEMPMQLQAKLLRALQENVIERLGGNRPIAVDIRVVAA 282 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRF 389 T R+ R + +GK REDLY R+N++ LP L+ R+ DIE + + + V Sbjct: 283 TNRNPRDAIKDGKLREDLYYRLNVFRIDLPALKARKSDIELLATHFLAK------RRVDI 336 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + +A + + Q W GN REL + R A + + +I + E+ + + Sbjct: 337 SAQAVQVLM------QYDWPGNVRELENVLERAAIISGNQQIQPQHLPAEMLNSNGEFID 390 Query: 450 SRPSALTALLGAEAE----NIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 + A + + ++++ + + Q + +L ++S + Sbjct: 391 ATALGHNADTAEAPQNPLCLPNAVEQLERQLIAKALAQTNGNKSKAAKLLEISER----- 445 Query: 506 NDADRLRKYLARFGLT 521 L L+++G++ Sbjct: 446 ----SLWYKLSQYGIS 457 >UniRef50_B3E6R3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B3E6R3_GEOLS Length = 447 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 110/482 (22%), Positives = 184/482 (38%), Gaps = 40/482 (8%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 D L L+ D R +++ I + +V E V D Sbjct: 3 DPLILIVDDDLR-----MRQLIRDTLASEGINAVLCS-DGAEAAEMVLRQTTDLIITDLM 56 Query: 102 QPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 P+ + + + + + I++ ++P P ++ ++ Sbjct: 57 MPQIDGMELLNLALQANPDCLVVVITGYGSIESAVQAIKNGAYDYLQKPFEPDQLLLVVQ 116 Query: 160 DLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 + + RQQ + + + I ++A +L+ G TG Sbjct: 117 RALVRLRLQDENRQLRQQVAGCQADELLGASKQMTTLKALITRIA-PFDTTVLIQGETGT 175 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK AR I L Q R Q F+ +NC L S LFGH +GAFTGA + ++GLL Sbjct: 176 GKELAARMIHRLSQRRDQR---FLPINCGALPETLLESELFGHARGAFTGADKDKKGLLE 232 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 SA+ G LFLDEI Q LL+ ++E +F G S D ++IA + L + V Sbjct: 233 SADHGTLFLDEINTTSPAFQVKLLRVLQEGSFIRVGDHEPRSVDLRVIAASNTTLEKEVQ 292 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWL 398 G+FR DL+ R+N+ T TLP LR+R DI Y + R+A G + + EA ++ Sbjct: 293 TGRFRSDLFYRLNVVTITLPPLRERNGDIGLLAHYFLTRYARQYGVQLSSISPEALQSLR 352 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 + W GN REL + R A + + + T L Sbjct: 353 NY------HWPGNVRELENIIERAVIMADGNELQPQYLPRF------------SVSDTPL 394 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + + + ++ H+I + + +L +S L + + ++ Sbjct: 395 SSSSDQELLPMAEVERRHIIRVLKATAGHRGKASKLLGIS---------LASLWRKVKQY 445 Query: 519 GL 520 GL Sbjct: 446 GL 447 >UniRef50_D0LIH3 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LIH3_HALO1 Length = 466 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 112/480 (23%), Positives = 188/480 (39%), Gaps = 31/480 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L R + + E EV A D P Sbjct: 15 RILVVDDERGIRALCSDVLRRAGHEVEVADT-----GTAGLAAAKAKRFDLIFCDINLPG 69 Query: 105 KEDYLIHITTGTHVAQ--ICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + + + R ++ +P P E+ ++ Sbjct: 70 VDGLTMLPSLLEREDPPTVILITAFPSVETAVRGMKLGARDYLTKPFTPDELRMVCRRAL 129 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 +A+ AE R + ++P ++ + + KVA +L+ G +G GK Sbjct: 130 SEDAMRRENAELRHALA---YGNLVGQSPAMLQLKKTVAKVAGA-DINVLVMGESGTGKE 185 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR + + FV VNC L S LFGHV+GAFTGA +++ GL +A+ Sbjct: 186 LVARALHYQGARAGRA---FVPVNCGALVDSLLESELFGHVRGAFTGAEQAKRGLFLAAD 242 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIGEL Q LL+A+++ P G D +++A T RDL++ VA+G Sbjct: 243 GGTLFLDEIGELPLALQPKLLRALQDGEIKPVGGLEPQRVDVRVVAATNRDLQEAVAQGS 302 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFA 401 FREDL+ R+N+ T +P LR+R+ED+ + A + + A A Sbjct: 303 FREDLFYRLNVITIEVPALRERREDVPVLAQHFAASAARRARRACPDISPAALEWLAA-- 360 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN R+L ++ R A + ++ + + ES P T G Sbjct: 361 ----QPWPGNVRQLENAIERAVVLAAGNTLGIEDFQPR-AGVAGLAAESAPGRRTGGRGD 415 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 A+++ D ++ H++ + + ++R L K L ++GL Sbjct: 416 SADDLLSLDELERLHILRVLEACGGQKTKASAVLGINR---------TTLWKKLRQYGLE 466 >UniRef50_B5EHD0 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B5EHD0_GEOBB Length = 458 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 103/478 (21%), Positives = 194/478 (40%), Gaps = 26/478 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L + E ++R ++ E + EE+ L D G + Sbjct: 3 KILIIDDEAFICENVQRILSGEGFLVCAAGSGKEARDIVAGEEIDLALLDLNLG---SED 59 Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 + L + + + +Q ++P + +I + Sbjct: 60 GIEVLKSLKETDPELLVIIITGYGSVESAVESLQLGAFHYMKKPFKADALRLIVKLALKT 119 Query: 165 NAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 + + ++ +S I ++ F M Q+ ++A + + +L+ G +G GK Sbjct: 120 QTLKREVRKLKRNDSPLPGRSPIIGKSEAFQEMAAQVREIA-RIPSTVLITGESGTGKEV 178 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR I +L + Q F+ +NCA++ S LFGH KGAFTGA ++GL A+ Sbjct: 179 VARAIHDLSDRKEQA---FIAINCASIPAPLLESELFGHEKGAFTGASGRKKGLFEEAHH 235 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G +FLDEIGE+ Q LL+ ++E+T G+ + + D ++IA T R+L + + E F Sbjct: 236 GTIFLDEIGEMDMAMQVKLLRVLQERTIRRVGAVKDIEIDARVIAATNRNLAKRIEEKSF 295 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 REDL+ R+N++ +P LR+R DI Y ++ + G R + EA + +A Sbjct: 296 REDLFYRLNVFPINIPPLRERPADIAALAVYFLDSFSRSFGRDFRDVSPEAEQLMAQYA- 354 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL + R+ + + + + EI ++ + A+ Sbjct: 355 -----WPGNVRELRNVIERICIMRSGPTLLPEHLPQEIRSTVAPPPLPAELPIS--IAAD 407 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + ++ + ++ + R LR + ++GL Sbjct: 408 LGLEEAVSAIEKSLIQQALQKTGWNVLQTAANLKIPR---------GTLRYKMEKYGL 456 >UniRef50_C0QIQ0 Sigma-54 dependent DNA-binding response regulator (NtrC-type regulator) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QIQ0_DESAH Length = 451 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 110/471 (23%), Positives = 186/471 (39%), Gaps = 29/471 (6%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L + + + L ++ E V E + D P Sbjct: 6 ILIVEDDQRMNQALLHILSKKGYAVESVD-----SGEKALERIRQTRFDLVVSDLKLPGM 60 Query: 106 EDYLIHITTGTHVAQICWFLLA--EARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + + + I + ++ ++ +P E+ ++ Sbjct: 61 DGMEVLKAIKQYDRTILFVIITAYGTVDTAVSAMKQGAEDYILKPFDMEELRLVVEKTLE 120 Query: 164 YNAI-ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + ++Q + I + + + I +V +SR+ +L+ G TG GK Sbjct: 121 KRGLFLDNLRLQQQLEKKYTFENIVGTSESMMGVFKTINRV-KESRSTVLIRGETGTGKE 179 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR I ++ VNCA L D S LFGHVKGAFTGA + GL +A+ Sbjct: 180 LVARAIHFNSAR---ALKPYLPVNCAALNEDLMASELFGHVKGAFTGAVADKRGLFEAAD 236 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIG++G Q L+A+E+ P GS ++ ++IA T ++L +V +G Sbjct: 237 GGTLFLDEIGDVGQGLQQTFLRALEKGEIQPVGSFQRKIVSVRIIAATNKNLEAMVEQGG 296 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FR+DLY R+N+ T LP LRQR+EDI + + ++A+ ++R A R + Sbjct: 297 FRKDLYYRLNVVTIDLPPLRQRKEDIGLLAAHFLTKYAAQNNKNIRGIAPRALRLLENY- 355 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 +W GN REL + R F + IT D + + S S T Sbjct: 356 -----SWPGNVRELENIIERATLFELTQEITPDSLPQVVIEPCTVLDPSPFSMETT---- 406 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + H++ I +L + R + + +L Sbjct: 407 ------SLEAVSRRHIVRILEMTNHNKTQASKLLGIDRSTLWRIMNRLKLN 451 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 110/490 (22%), Positives = 199/490 (40%), Gaps = 36/490 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L R + +L++ +E + + D P+ Sbjct: 5 KILIVDDERLVRWSLRQKCEEWGYH----VIEADNGSA-GLRLARHESPDLVLLDVRLPD 59 Query: 105 KEDYLIHITTGTH-VAQICWFLLAEARYLPAR-LIQSSPPRKKEQPRGPGEVTIIDLDLS 162 I + A+ + A+ + + ++ +P E+++ + Sbjct: 60 MGGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPLDFDELSVAVKNAL 119 Query: 163 RYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + + R + I + ++ + K+A IL+ G +G GK Sbjct: 120 ETTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTELMVFVAKIATSEATTILVQGESGTGK 179 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I + + + FV +NC+ + + LFGH KGAFT A+ ++GL +A Sbjct: 180 DLVAKAIHYQSRRQEK---PFVAINCSAIPETLMEAELFGHEKGAFTDAKAMKKGLFEAA 236 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDEIGEL QA LL+ +E++ G R + D ++IA + RDL ++V +G Sbjct: 237 DGGTLFLDEIGELSPLLQAKLLRVLEDQVIRRVGGVRDMQVDVRVIAASNRDLEKMVRDG 296 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 FR+DLY R+ + + LP LR R+EDI P +++ +ER+ S+R T+ R L Sbjct: 297 TFRQDLYYRLAIISVFLPPLRDRKEDILPLVEFFIERYNRKFKKSIRGVTDNTRRLL--- 353 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR-----------LRYNWQES 450 + W GN REL ++ R + + D + + + + Sbjct: 354 --MKHDWPGNVRELKNAIERAMILDEAENLRPDYLPFAVAQQQAMYTAFESASPPAPIQQ 411 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 P+ + E + ++ V ++A +L D+SR Sbjct: 412 LPNGRSLPRLVIPEGGTSLEEVERAFVEMAMKEANGNQTHAARLLDISRDA--------- 462 Query: 511 LRKYLARFGL 520 LR L +FGL Sbjct: 463 LRYKLKKFGL 472 >UniRef50_C8R1J5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1J5_9DELT Length = 467 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 104/473 (21%), Positives = 178/473 (37%), Gaps = 27/473 (5%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT 116 E R+ + E E +V E + +D P + + Sbjct: 10 ELSMREFLKILLEEEGYAVSCADGGTAALELLAREDYDLLISDIRMPPPNGLELLVRAKE 69 Query: 117 --HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEE 174 + + ++S +P E+ I E Sbjct: 70 IKPELPVVLVTAFASPDDAVSAMKSGAYDYITKPFKVDEIKDIVGTALSSPQPLPAKPGE 129 Query: 175 RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQA 234 + GI +P ++ + I +VA +RA +L+ G +G GK +AR I L A Sbjct: 130 SEVAATNEFEGIIGGSPEMRKIYDIISRVA-PTRANVLIQGESGTGKELVARAIHRLSPA 188 Query: 235 RHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGEL 294 FV + C+ + S +FGH KGAFTGA SR GL AN G FLDEIGEL Sbjct: 189 SGHE---FVPIVCSAIPESLFESEVFGHTKGAFTGAASSRAGLFEQANQGTAFLDEIGEL 245 Query: 295 GADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLW 354 Q LL+ ++E+ G+ ++I+ T +DL + V G+FREDL+ R+ + Sbjct: 246 TPIIQTKLLRVLQEREIKRVGATESTRIQIRVISATNKDLEEEVMAGRFREDLFYRLAVV 305 Query: 355 TFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFR 413 +P LR+R+ D+ +D+ + ++A L + R ++ A L + + GN R Sbjct: 306 PIRVPPLRERKGDVPLLVDHFLAKYARLFNKDIHRISSYAMEVLLDY------DFPGNVR 359 Query: 414 ELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAE-----NIDL 468 EL + R S I + + +R + + + E Sbjct: 360 ELENIIERGVAMENSQIILPESLTLSGHRRSREPEPAGGTVDDKRQEIAEEVFSRGLEPT 419 Query: 469 FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 ++ E ++ +A + +L LR + ++G+ Sbjct: 420 LADLEREMIVNALEKAGNSKTRAAELL---------RTSFRSLRYKIKKYGID 463 >UniRef50_Q023H8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023H8_SOLUE Length = 465 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 97/468 (20%), Positives = 175/468 (37%), Gaps = 24/468 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L SL + + + ET S E D + D P Sbjct: 5 RILIVEDDDSLRKVMHVQLEREGYETSSASTAEEAFAILDKASQSLVMTDLHL-----PG 59 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + +++ +P P E+ ++ Sbjct: 60 MSGLELLKKVRLDYPETAVIVMTAFGTIQTAVEAMKAGAYDFLTKPIHPYELKMLVRRCL 119 Query: 163 RYNAIASRFAEER-QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 ++ + R + I + R ++ +VA + A IL+ G TG GK Sbjct: 120 EHHRLIEEVQVLRTALDEKYGFEAIVGSSSQLMRALDVAARVAS-TDATILIYGETGTGK 178 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I R + F+ +NC + + S LFGHVKG+FTGA ++G + A Sbjct: 179 ELVAKAIHLRSSRRDR---PFITINCGAIPKELLESELFGHVKGSFTGALTHKKGKVEMA 235 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG + LDEIGE+ + Q +L+ I+E+ G+ D +++A T R+L +V G Sbjct: 236 DGGTVLLDEIGEMPLELQVRILRLIQEREIEKVGATSPTKVDVRIVAATHRELAGMVKAG 295 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 FREDLY R+ + LP LR+R DI + + +E+ + Sbjct: 296 TFREDLYYRLLVVPINLPPLRERTGDILILVQHFLEKCRMKHSR-----PNLMMSTDLLP 350 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 +W GN R+L +V R+ A I + D ++ + A Sbjct: 351 YFTNYSWPGNVRQLENAVERLVLLARDSTINASDLPDFLSAAPAPP-------PEPVPVA 403 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 E + ++ + ++ ++ Q ++SR+ A + Sbjct: 404 LPEGGINLEDLEKDLILQALKKYAGNQTRAAQYLNMSRRAFAYRLEKY 451 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 102/475 (21%), Positives = 171/475 (36%), Gaps = 72/475 (15%) Query: 86 EEVYACLHDFARGYEFQPEKEDYL----IHITTGTHVAQICWFLLAEARYLPARLIQSSP 141 E+ L D P + + + T + + Sbjct: 48 EQATFALPDLILLDIMMPGMDGFETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGA 107 Query: 142 PRKKEQPRGPGEVT-------------------------IIDLDLSRYNAIASRFAEERQ 176 +P EV + L+ + + E Sbjct: 108 VDYITKPFQLQEVLSRIHTHLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENT 167 Query: 177 QTLDF-----LKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL 231 + I T++ F +++ +E+VA + +L+ G +G GK LAR + L Sbjct: 168 YLREEIKQTKNFDEIVTQSKAFQKVLRSVEQVA-PTNTTVLILGESGTGKELLARAVHNL 226 Query: 232 KQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEI 291 +++ V++NCA L S LFGH KGAFTGA + G A+GG +FLDEI Sbjct: 227 SSRKNK---PLVKINCAALPATLIESELFGHEKGAFTGATAQKVGRFELADGGTIFLDEI 283 Query: 292 GELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI 351 GE+ D QA LL+ ++E F GS + + + ++IA T RDL AEG+FREDLY R+ Sbjct: 284 GEMPLDLQAKLLRVLQEGEFERVGSTKTMKVNVRVIAATNRDLEIESAEGRFREDLYYRL 343 Query: 352 NLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGN 411 +++ LR R+EDI + + +H + G ++ T W GN Sbjct: 344 SVFPIVSLPLRTRKEDIPLLVRHFCAKHGADMGKTIDTIPATV-----LDTLTDYHWPGN 398 Query: 412 FRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDR 471 REL V R + + + L + + + Sbjct: 399 IRELENLVQRALIMSPGRTLVIGDW-----------------LRKKPLANQKATLMTMEE 441 Query: 472 MQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 + H+I++ + +L D+ L + + G+ Sbjct: 442 AERAHIISVLELTHWKVSGDNGAARLLDM---------IPTTLDSRMKKLGIRRP 487 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 118/493 (23%), Positives = 204/493 (41%), Gaps = 40/493 (8%) Query: 53 RSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHI 112 R+L +T+ + V V +E A + + F E L + Sbjct: 75 RTLMDTMSEAVTIVDSRNVVQHWNRAAETI--YEIDRAQVVGTSLDEHFASESIRLLDAL 132 Query: 113 TTGTHVAQICWFLLAEARYLPARLI---QSSPPRKKEQPRGPGEVTIIDLDLSRYNAIAS 169 GT V ++ ++ L + + E+ ++ +L+ A Sbjct: 133 RQGTSVQRVYHIPRPDSHVLINAAPIRREGEIIGAISIEQDITELVRLNEELAHTTAHLH 192 Query: 170 RFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 +E R Q D I + I +KVA ++ A +L+ G +G GK A+ Sbjct: 193 NLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVA-QTDATVLIYGESGVGKELFAQA 251 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA-RESREGLLRSANGGML 286 I + + F+ +NC + S LFG+ GAFTGA ++ + G L A+GG L Sbjct: 252 IHQASRR---HEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGGTL 308 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIGEL + Q LL+A++E+ FY G ++ + +++A T R L Q+VA+G+FRED Sbjct: 309 FLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFRED 368 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQ 405 LY R+N+++ +P LR+R+ED+ + + ++ SV R + E +A + Sbjct: 369 LYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEY----- 423 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 TW GN R+L + R++ +G I + + I S + + Sbjct: 424 -TWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTT 482 Query: 466 IDLFDR------------MQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 R + E ++A + A +L VSR L Sbjct: 483 PPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSR---------GTLYN 533 Query: 514 YLARFGLTWEAVQ 526 + +F + E+ + Sbjct: 534 KMKKFNINEESFK 546 >UniRef50_A4VJ57 Nitrogen fixation positive regulatory protein n=10 Tax=cellular organisms RepID=A4VJ57_PSEU5 Length = 521 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 125/528 (23%), Positives = 209/528 (39%), Gaps = 43/528 (8%) Query: 9 FVGTVLDYAGRGSQRWSKWRPT-------LCLCQQESLVIDRLELLHDARSRSL-FETLK 60 + L + ++ ++ RP L + ++ ++ L + + + SL + Sbjct: 17 LLDAQLQALAQIARILNRGRPIEELLAEILAVLHEDLGLLHGLVSICNPKDGSLQVGAVH 76 Query: 61 RDIASVSPETEVVSVEI---------ELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH 111 D +V E I + N + A R + + + Sbjct: 77 SDSETVVRACESTRYRIGEGVFGNILKHGNSVVLGRIDAEPRFLDRLALYDMDLPFIAVP 136 Query: 112 ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIA-SR 170 I L A+ L+ + R + + ++L + R Sbjct: 137 IKA--VDGTTIGVLAAQPDRRADELMPERTRLMEIVARLLAQTVRLVVNLEDGQEVVDER 194 Query: 171 FAEERQQTLDFLKSGIA-TRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 R+ + + R+ +Q+ +VA K + +L+ G +G GK +A I Sbjct: 195 DELRREVRAKYGFENMVVGHTASMRRVFDQVRRVA-KWNSTVLILGESGTGKELIASAIH 253 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 HQ V +NCA L S LFGH KGAFTGA + R+G A+GG LFLD Sbjct: 254 YNSPRAHQ---PLVRLNCAALPETLLESELFGHEKGAFTGAVKQRKGRFEQADGGTLFLD 310 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIGE+ QA LL+ ++E G + V + +++A T RDL V +GKFREDLY Sbjct: 311 EIGEISPMFQAKLLRVLQEGELERVGGSQTVKVNVRIVAATNRDLEHEVEQGKFREDLYY 370 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWR 409 R+N+ +P LR+R DI ++ +++ A G ++ A R ++ W Sbjct: 371 RLNVMAIRVPPLRERSADIPELAEFLLDKIARQQGRKLKLTDSALRLLMS------HRWP 424 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + R A + G I+ DVV + L ++ P L ++ Sbjct: 425 GNVRELENCLERSAIMSEDGTISRDVV--SLTGLDHDATPLAPVPEVDLADDSLDD---- 478 Query: 470 DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 E VIA QA + A +L ++ + A L ++ + Sbjct: 479 ----RERVIAALEQAGWVQAKAARLLGMTPRQIAYRV--QTLNIHMRK 520 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 124/479 (25%), Positives = 211/479 (44%), Gaps = 43/479 (8%) Query: 55 LFETLKRDIASVSPETEVVSVEIELHNPWDF---EEVYACLHDF---ARGYEFQPEKEDY 108 + + ++ + V P+ + V L + E + A F A ++ + Sbjct: 30 IVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCSLFKCDACRRVRSEARQAW 89 Query: 109 LIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIA 168 G +V + C + + Y+P +++S+ E G V + DLS + Sbjct: 90 CKLFEQGVYVRRKCSIMRKDGTYVP--ILKSASILHAEDGSTVGAVETMT-DLSELDRKE 146 Query: 169 SRFAEE-RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 + + R + + G+ + R+ IEK A +S AP+ + G +G GK +AR Sbjct: 147 NELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEK-AAQSDAPVFIYGESGTGKELVARA 205 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I +L Q +V+ NCA L S LFGHVKGAFTGA R+G +A+GG +F Sbjct: 206 IHDLGPRSDQ---PYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIF 262 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDEIG+L Q LL+ +E KTF G +RQ+S D ++I T + L +L+++G+FREDL Sbjct: 263 LDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDL 322 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQA 406 + RIN+ LP LR+R+EDI DY ++R + ++ + + R ++ + Sbjct: 323 FYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDY------ 376 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 +W GN REL +S+ A G I + + + E R Sbjct: 377 SWPGNVRELKSSLEYAFVLADHGHIEPEHLPHNVVVTAPPVAEPRYGNPG---------- 426 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 Q + ++ QA + ++ ++R + + + G+ V Sbjct: 427 ---HDSQRQQLVQALHQAGGNKSEAARILGINRV---------TVLNRMRKHGIDMTRV 473 >UniRef50_A0LND9 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A0LND9_SYNFM Length = 483 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 106/501 (21%), Positives = 183/501 (36%), Gaps = 45/501 (8%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 +D++ ++ L L R + E + E V D Sbjct: 1 MRKMDKILIV--DDDEGLVHFLTRFFSRKEYEVLSCN-----SGTAALEAVGREPFDLIL 53 Query: 98 GYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 P K I I ++ +P + Sbjct: 54 LDYKMPGKNGLETLKEIRRLQVKTPIIVMTAYGTMDTAIEAMKLGAYDYLLKPFDRNGLE 113 Query: 156 IIDLDLSRYNAIASRFAEERQQTLDFLKS-----GIATRNPHFNRMIEQIEKVAIKSRAP 210 I D N + +L + I + + + I +VA K Sbjct: 114 RIARDALEVNRLMKEVVSFPAHSLTSARVPKGEIKIIGNHTRMQEVYKLIGQVANK-DVT 172 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G +G GK +AR + + + F+ VNCA + S LFG+ +GAFTGA Sbjct: 173 VLITGESGTGKELVARALYHHS---DRKNKPFLGVNCAAIPETLFESELFGYERGAFTGA 229 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G +GG LF DEI E+ QA LL+A++ G+++ + D +++ T Sbjct: 230 ERTHIGKFERCHGGTLFFDEIAEMPLSTQAKLLRALQYGEIERVGAEQPLKVDVRVLVAT 289 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 ++L + V +G+FREDLY R+ + + LP LR+R EDI +DY + R +R Sbjct: 290 NKNLERAVEQGRFREDLYWRLKIISIHLPPLRERPEDIPALVDYFLVRFGEEYKSPIRRI 349 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 + A A W GN REL +V R ++ I + + + + E Sbjct: 350 EDG-----ALAKLKSHAWPGNVRELENTVRRAVVLSSGDVIREEHLRFDSGGHEPSSPEW 404 Query: 451 RPSALTAL-------------LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 + + +G EA + + D ++ + + Q + ++ V Sbjct: 405 DKNPWARVERKLEELIPDLLQVGGEAMHESIIDMVERILLSKVLEQCGNNQVKAARVLGV 464 Query: 498 SRQGKASVNDADRLRKYLARF 518 SR + LR + +F Sbjct: 465 SR---------NTLRHRMKKF 476 >UniRef50_B2V8F5 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Sulfurihydrogenibium RepID=B2V8F5_SULSY Length = 440 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 98/480 (20%), Positives = 185/480 (38%), Gaps = 45/480 (9%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 ++L S+ + +K ++ E V + D Sbjct: 2 FKILLIDDEESILKVIKTVLSEAGFE-----VLTAKSKKESLSLIEKEKFDLIISDFLLE 56 Query: 104 EKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + I + + I+ +P + I Sbjct: 57 DGTGLEILESFRKKDILTPFLIITAYGSINGAVEAIKKGANHYIPKPIDIDNLIKIIDF- 115 Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 ++ ++ GI ++ + ++I+ V KS + IL+ G +G GK Sbjct: 116 --------YIKKQENFDVEEEFEGIIGKSQKMKDLFKEID-VVSKSESSILIEGESGTGK 166 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I + + + F+ +NC+ + + + LFGH KG+FTGA G + A Sbjct: 167 ELVAKAIH---RRSKRANQPFIPINCSAIPNELFENELFGHEKGSFTGASNREIGKIELA 223 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 G LFLDEIGE+ QA LL+ ++E+ F+ G + ++I+ T R+L ++V Sbjct: 224 GEGTLFLDEIGEMPLFMQAKLLRVLQEREFFRVGGKELIKMRCRVISATNRNLEEMVENK 283 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAF 400 +FREDL+ RIN+ +P LR+R+EDI + +++ + + +V + +A + + Sbjct: 284 EFREDLFYRINVIHLKIPPLRERKEDIPLLVKKFIDKFSKINNKNVYDIDNDALEILMNY 343 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 W GN R+L + R IT + + D I E+ S +L Sbjct: 344 ------DWPGNVRQLENIIERAVVLCQGEIITANHLPDRIKSNSQKISENIRSENNSLN- 396 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ ++ + ++ Q +SR+ +LR + FGL Sbjct: 397 --------LYDIEKNIILKVLQEENFNQTRAAQKLGISRK---------QLRTKMKNFGL 439 >UniRef50_B5JMU1 Sigma-54 interaction domain family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JMU1_9BACT Length = 539 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 104/456 (22%), Positives = 176/456 (38%), Gaps = 39/456 (8%) Query: 76 EIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARY---L 132 + + + + D + + A + Sbjct: 119 PVVITDLAVWARKQGVEEDVLESLRLADGVGMVSVPLKFDEEAIGTLSIERANTNFGWES 178 Query: 133 PARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPH 192 R++ + R + + A R EE F I + Sbjct: 179 DLRILGMIASIVAQAARVRRD---AAEQIQSLRAENERLQEE--IAHGFRPENIIGSSST 233 Query: 193 FNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRG 252 + IE+VA S +L+ G +G GK +A+ + E R++ FV+ NCA L Sbjct: 234 MRSVYYHIEQVA-NSATTVLIRGESGTGKELVAKALHEKSSRRNK---PFVKFNCAALPD 289 Query: 253 DTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFY 312 S LFGH KGAFTGA R+G SANGG +FLDEIG++ Q LL+ ++E+ F Sbjct: 290 SIIESELFGHEKGAFTGALAMRKGRFESANGGTIFLDEIGDISLSTQVKLLRVLQEREFE 349 Query: 313 PFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNL 372 GS D ++IA T R+L +++ G FREDLY R+N++ +P LR+R+ DI Sbjct: 350 RVGSQETRRVDVRVIAATSRNLEEMMEAGTFREDLYYRLNVFPIYMPPLRERKCDILMLA 409 Query: 373 DYEVERHASLTG-DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRI 431 D+ +E+ A G +R ++ A +++ W GN REL + R A I Sbjct: 410 DHFIEKFAKRMGRKPIRISSAAIDMLVSY------HWAGNVRELENCIERAVLLAKGQSI 463 Query: 432 TLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAG 491 + + + A A D ++ E ++ ++ S A Sbjct: 464 KAHHLPPTLQKKSR-----------AESSEVATLEDAIQALEREMIVDALKETGSNLAEA 512 Query: 492 RQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + ++ + + ++G+ + Sbjct: 513 SRRLGLTERKAGL---------RVKKYGIDVSRFKS 539 >UniRef50_C0GSE0 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSE0_9DELT Length = 730 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 102/479 (21%), Positives = 178/479 (37%), Gaps = 48/479 (10%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE-FQ 102 L L+ LF ++ VS S++ L N E + + + E F Sbjct: 292 LILVFGPDRDVLFVITEKGTYPVSDRQTAQSIDAALQNLQGVETIDGRVFESLPLPEGFV 351 Query: 103 PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 ++ ++ + + + + ++ G I + Sbjct: 352 LGEKQVVVPLYYEDILCGAMLASCSSKCKCDSDSMEL-ISLVLSHASG-----TIRRAIL 405 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 I ++ + G+ R+ + I+ VA + +L+ G +G GK Sbjct: 406 HQEEIKK---LKQGVSESAGFEGMIGRDYRMQTIYRLIQDVA-PTDVTVLIQGESGTGKE 461 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +A+ I R FV +NC+ S LFGH KGAFTGA R G A Sbjct: 462 LVAKAIHARSSRRD---NPFVVINCSAYPATLLESELFGHEKGAFTGAIRQRPGRFEQAR 518 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG +FLDEI E+ Q LL+ ++ + F G ++ + D +++A T +DL + V G+ Sbjct: 519 GGTVFLDEIAEVDLSAQVKLLRVLQTQKFERLGGEKSIEVDVRILAATNKDLLEEVKAGR 578 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFA 401 FREDLY R+++ LP LR+R D + +ER A++ + ++ A RA L + Sbjct: 579 FREDLYYRLDVVPINLPPLRERGNDTALLARHFLERFAAVQDKRINEISSSAMRALLDY- 637 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 +W GN REL + + I L+ + D++ GA Sbjct: 638 -----SWPGNVRELENVMEQAVVLCKGETIALEDLPDKLQ------------------GA 674 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + ++ + + R L L + G+ Sbjct: 675 RPARRKTIEDQEKNLLLETLEACGWNKKMAAERLGIGRS---------TLYAKLKKHGI 724 >UniRef50_Q1NW39 Nif-specific regulatory protein n=2 Tax=Deltaproteobacteria RepID=Q1NW39_9DELT Length = 541 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 122/527 (23%), Positives = 195/527 (37%), Gaps = 35/527 (6%) Query: 9 FVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVI--DRLELLHDARSRSLFETLKRDIASV 66 +G+ LD + ++ TL + + ++ D L A + R I Sbjct: 24 LIGSALDISKTLNETLGVLHETLRMERATLVLEECDSGRLTIVASYGLSPAEIARGIYR- 82 Query: 67 SPETEVVSVEIELHNPWDFEEVYACLHDFAR-GYEFQPEKEDYLIHITTGTHVAQICWFL 125 PE V+ P+ +V+ R K + L Sbjct: 83 -PEEGVIGRIFASAYPFVVPDVHREPLFLNRTRARTNLPKGEISFIGVPVMLAENPVGVL 141 Query: 126 LAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRF--AEERQQTLDFLK 183 + + P + G+ + + + R+ F + Sbjct: 142 SVDRLFGPEISFEEDIRFLTVVATMIGQFLNLQRTFASSQQVLREENSQLRRKLQDRFNR 201 Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 I + + + I KVA SRA LL G +G GK +AR I + F+ Sbjct: 202 YNIIGQCKRIQEVYDYIAKVA-PSRATALLLGESGTGKELVARAIHQAGPR---AGEPFI 257 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 ++NCA L + S L GH KGAFTGA ++G A+GG LFLDEIGEL QA LL Sbjct: 258 KLNCAALPENLLESELLGHEKGAFTGAVGQKKGRFELADGGTLFLDEIGELPLALQAKLL 317 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+TF G R ++ D ++IA T R L V EG FR DLY R+N+ LP LR+ Sbjct: 318 RVLQERTFERLGGSRTIAVDVRIIAATNRSLEAGVEEGVFRADLYYRLNVVPVVLPPLRE 377 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+EDI LD+ + V+F R + +W GN REL V R+ Sbjct: 378 RREDIPLLLDHFLRESNRHNRRRVKFAAAVIRRL------NEYSWPGNVRELQNLVERLV 431 Query: 424 TFATSGRITLDVVEDEINRLRY---------NWQESRPSALTALLGAEAENIDLFDRMQL 474 + LD + + Q + + + M+ Sbjct: 432 IMVDGEVVNLDDLPAYLADPDPANRRCPRGFADQPAAVLPAPSWVDQGMAAGRSLWEMEK 491 Query: 475 EHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 E V+A R+ + + ++ + + ++ + Sbjct: 492 EEVLAALRRHGWVQTRAARDLGITPRQMG---------YRIRKYAIE 529 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 168/345 (48%), Gaps = 35/345 (10%) Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 Q KS + T++ +++ + VA + A +LL G +G GK+ LA+ I R Sbjct: 220 QEAASNKSRLITKSSLMVYVLDIAKTVA-DTTANVLLEGESGTGKNVLAKYIHNQSSRRD 278 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 + FV++NCA + + S LFG+VKGAFTGA + + G + A+GG LFLDEIGEL Sbjct: 279 K---PFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPT 335 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 Q+ LL I+EK F G + D ++IA T +DL QLV EGKFREDLY R+ + + Sbjct: 336 YLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISI 395 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 +P LR+R+EDI ++Y ++ ++ ++ + EA R L + + GN REL Sbjct: 396 KVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNY------DYPGNIREL 449 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 + R A I + + DEI + + + + D + + Sbjct: 450 ENIIERAVILAKGKFIEVSDLPDEI-------------VYNTKILTQNDLDEEID--EKQ 494 Query: 476 HVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ + + ++ ++ R L + L ++GL Sbjct: 495 KILRVLESVNWNKSKAAKILNIDRV---------TLWRKLKKYGL 530 >UniRef50_B8GTB8 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTB8_THISH Length = 453 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 101/495 (20%), Positives = 186/495 (37%), Gaps = 50/495 (10%) Query: 29 PTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEV 88 + E + + +LH + + ++ EV V +L P Sbjct: 6 VVVITEDDEVMRELVVNVLHGIDATVIPMESSQESLDFIENNEVAVVVTDLRMP------ 59 Query: 89 YACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQP 148 + + L + Q+ + +++ +P Sbjct: 60 -------------RIDGMKVLDFARQKNPLTQVILMTGHATVESAVQSLKAGAFDYICKP 106 Query: 149 RGPGEVT-IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 E+ ++ LS +N + + I R+ + + I+ A Sbjct: 107 FENVELRHTVERALSHWNLSRENMRLREENKVFAEGDVIIGRSAAMDEVHRLID-AAAAY 165 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 +L+ G +G GK +AR+I R FV +NCA + S LFG+ KGAF Sbjct: 166 DCSVLITGESGTGKELVARQIHLKSPRRDNS---FVAINCAAIPEQIIESELFGYQKGAF 222 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA ++ GL +ANGG +FLDE+ QA LL+ +++ TFY G + +++ Sbjct: 223 TGAERAKPGLFETANGGTIFLDEVNNASLSLQAKLLRVLQDATFYRLGDTEPRHVNVRVL 282 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T RD+ L+A+ FREDLY R+ + +P LR R++D+ +Y + ++A V Sbjct: 283 AATNRDVPGLIAQETFREDLYYRLRVIEIHIPALRDRRDDVPLLANYFISKYAKRFNKPV 342 Query: 388 -RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 +T+ A + + W GN REL + R I V+ EI+R Sbjct: 343 DGMSTQVLGALM------RHDWPGNVRELENVIQRALILCQGKVIDEGVLPPEISR---- 392 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 ++ + + +++ + R+ A ++ + Sbjct: 393 ------GTELSVRAIDHMQPQTLEEVEVYFIRKTLRETNGDRALCAEILGID-------- 438 Query: 507 DADRLRKYLARFGLT 521 L + + R+ + Sbjct: 439 -KSTLWRKIKRYSIE 452 >UniRef50_D2L943 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L943_9DELT Length = 482 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 110/499 (22%), Positives = 186/499 (37%), Gaps = 37/499 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L L ++ +R +A+ +V V + D P Sbjct: 8 ILIVDDDHQLRQSFERLLAAEGY-----AVRTASSGEAGILAVREAVPDLVVMDVRMPGI 62 Query: 106 EDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT-IIDLDLS 162 + + + + + +P E+ +I+ ++ Sbjct: 63 SGLEAYAAMREFEPRLPVIIMTAFGTTDIAIEATKMGAYDYILKPFDIPEILKLIEKAVA 122 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 ++ SR A + I R+ + + I + A + A +L+ G +G GK Sbjct: 123 AGRSMRSRVAVGEEGEAAVAADAIIGRSQAMQDLYKAIGR-AAPTDATVLIRGESGTGKE 181 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR + + F+ +NC + S LFG+ KGAFTGA + G + AN Sbjct: 182 LVARAVYQHSLR---ADKPFLVINCVAIPETLLESELFGYEKGAFTGATGRKVGKIEQAN 238 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +FLDEIG++ QA +L+ ++E+ G + + D ++IA T RDL V G+ Sbjct: 239 RGTVFLDEIGDMPLSIQAKILRLLQEQNVERLGGRQVIPVDVRIIAATNRDLEAAVRAGQ 298 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFA 401 FREDLY R+ + T +P LR+R DI + Y + R++ G + EA Sbjct: 299 FREDLYYRLKVVTMAMPPLRERPGDIPLLVRYFLARYSREMGQPDPGVSDEAMALL---- 354 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL-- 459 W GN REL +V + F + D V+ + +L Sbjct: 355 --TTQPWPGNVRELGNTVKKALIFNLGAPLGPDEVQKASGEPLRGGGPAEADPGDSLARY 412 Query: 460 -------GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 G E+ DL DR L + + +L +SR L Sbjct: 413 VRRELASGRESLFEDLMDRFGLLVIREALEATGGNRSQAARLLGLSRP---------TLL 463 Query: 513 KYLARFGLTWEAVQDQHSS 531 + ++GL E+ Q S Sbjct: 464 AKIEKYGLRIESRVRQSDS 482 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 109/488 (22%), Positives = 197/488 (40%), Gaps = 34/488 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVS---VEIELHNPWDFEEVYACLHDFARGYEF 101 +L + L+ ++ E E + V I+L F+ V L Sbjct: 3 RILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMEL----- 57 Query: 102 QPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + D L + + + + ++ +P ++ ++ Sbjct: 58 -ADGYDVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLHEDIKFTVRNI 116 Query: 162 SRYNAIA-SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + ++ A +RQ + I + N++ + IEK A ++A I++ G +G G Sbjct: 117 LEHGSLRLENLALKRQLSQKLDNKKIVGLSEAMNKVFDTIEK-AAPTKANIMITGESGTG 175 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K LA + + R + F+ +NCA + S LFG+ KGAFTGA ++ GL+ Sbjct: 176 KGLLAEAVHQNSPRRDK---PFMAINCAAIPETLLESELFGYKKGAFTGANSNKTGLITM 232 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG LFLDEIG++ Q+ +LK +E P G + + D ++I+ T +DL + E Sbjct: 233 ADGGTLFLDEIGDMPMVIQSKILKVLESGEVLPLGDTKTRNVDLRIISATNKDLESCIRE 292 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTE-ARRAWLA 399 FREDLY R+N+ +P LR+R+EDI ++ ++ V+ E A +A +A Sbjct: 293 KTFREDLYYRLNVIEIRMPALRERREDIPLLAAKFIKEEEAVPDKVVKGFDEGAMKAMMA 352 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL V R FA +IT + +I R + Sbjct: 353 Y------PWPGNVRELKNVVERAVIFAGGEQITPAELPAKIRRGDATAGP----GGNTEV 402 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 + + + +I + + + L + +++ G Sbjct: 403 SGLQPLKAMVYDYEKDIIINALNRFDGSKEMVAKTLGID---------LTTLYRKMSKLG 453 Query: 520 LTWEAVQD 527 + EA++ Sbjct: 454 IDEEALKK 461 >UniRef50_D2R8T8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Planctomycetaceae RepID=D2R8T8_9PLAN Length = 457 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 110/485 (22%), Positives = 187/485 (38%), Gaps = 37/485 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L R L E++ + + V VE ++ D + Sbjct: 6 ILLVDDDRHLLESMALWLRE-----QHVEVETAASCQEAIAKMRDRAFDIVLSDIRLDDG 60 Query: 106 EDYLIHI-TTGTHVAQICWFLLAEARYLPA-RLIQSSPPRKKEQPRGPGEVTI-IDLDLS 162 + + + + Q L A +++ +P E+ + I+ LS Sbjct: 61 DGFDVLAFSRKNRPEQSVILLTGYGTVDTAIEALRAGAFDLLTKPLIDEELLLSIERALS 120 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + + Q L F I ++ + +E++A +RA +L+ G +G GKS Sbjct: 121 QRKVVEENVQLKAQLDLRFGLENIVGHEHRMQKVFDMVERIA-DTRATVLITGESGTGKS 179 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 LAR I R Q FVEV C + S LFGH G+FTGA + G A+ Sbjct: 180 LLARAIHRRGSRRDQA---FVEVACGAMPESLLESELFGHAAGSFTGATGDKIGKFTQAD 236 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +FLDEIG A Q LL+ ++E F P GS + D ++I T L Q VA G+ Sbjct: 237 KGTIFLDEIGTASASLQVKLLRVLQELEFEPVGSTKTQRVDTRVILATNEKLEQAVAAGR 296 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FR+DLY R+N+ +P LR+R DI ++ ++R +G + F+ + A Sbjct: 297 FRQDLYYRVNVINIEVPPLRERIADIPLLANHFLQRTCEESGKRSQGFSDDVITAM---- 352 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 + W GN REL V R ++ ++ + I + + Sbjct: 353 --QRYNWPGNVRELQNVVERAVLLGRGPKVQVEDLTPAIASGQIVSIDPV---------G 401 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + + + ++ + + A ++R L K + R GL Sbjct: 402 NKALKEALESPERAIILDVLEMHQWNRNATADALGINR---------TTLYKKMKRLGLD 452 Query: 522 WEAVQ 526 + + Sbjct: 453 KQPGR 457 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 107/482 (22%), Positives = 195/482 (40%), Gaps = 26/482 (5%) Query: 43 RLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQ 102 R+ +L + + + + V + V S E + + D Sbjct: 14 RVRVLIVDNDEAHAQAVADSLTRVGYDCTVASAGAESGKKA-LDLIEVENFDVIITELMM 72 Query: 103 PEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 E + I + A++ + Q +P E+ Sbjct: 73 DEVDGLEILRRSKAELPDAEVILLTGHASIKSALTAGQHGAHTYLTKPLDISELRQAVDR 132 Query: 161 LS-RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 S R + F R+ F G+ +P +R+IE++ VA + + +L+ G +G Sbjct: 133 ASSRIRLLRKTFELSRRLDEKFGFEGVIGNSPSMHRLIEKLRSVA-PTDSTVLIQGESGT 191 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +AR I + + +++ FV +N + L S LFGH GAFTGA R G Sbjct: 192 GKELVARAIHQNSERKNK---PFVPLNISALPESILESELFGHEAGAFTGAATKRIGKFE 248 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 ANGG LFLDE+GE+ Q LL+ +EE+ G++ ++ + +L+A T DL+ ++ Sbjct: 249 YANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDMIK 308 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWL 398 +G FR+DLY R+++ T LP L R+ DI +D+ +++ A + + ++A + Sbjct: 309 KGTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFLKQFAERQKRPIPTVTRQVQQALM 368 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 A+A W GN REL V M G++ +D + + I + + S + Sbjct: 369 AYA------WPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHH--EHSEVDLIQNP 420 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 G + + ++ ++ L + + L + + + Sbjct: 421 AGNDGLIGRSLNDVEKYYIARALELTGGKRDEAANLLGIGER---------TLYRKIREY 471 Query: 519 GL 520 L Sbjct: 472 EL 473 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 97/406 (23%), Positives = 171/406 (42%), Gaps = 30/406 (7%) Query: 129 ARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTL--DFLKSGI 186 A +P + + R R E+ + L + ++A E +Q I Sbjct: 121 ATGIPVMDDEGNIKRVVVNVRDITEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNI 180 Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 +P R+++ +VA K + +L+ G +G GK +A I L G +++N Sbjct: 181 VASSPKTKRVLDMAAQVA-KVDSTVLITGESGVGKEIVANVIHCLSHRS---KGPLIKIN 236 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKA 305 C + + S LFG+ GAFTGAR+ + G+ A G LFLDE+GEL + Q LL+ Sbjct: 237 CGAIPENLLESELFGYEPGAFTGARKQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRV 296 Query: 306 IEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQ 365 +++ G + + D +++A T +DL ++V + KFR+DLY R+N+ + +P LR+R+ Sbjct: 297 LQDHEVLRVGGLKPIPVDVRIVAATNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERR 356 Query: 366 EDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 EDI + +E+ G + RF + A+ W GN REL + R+ Sbjct: 357 EDIPLLALHFLEKINKKYGFNKRFAPDVIDRLSAY------PWPGNIRELENVIERVMVM 410 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 S I + I L + S + L + ++ + ++ Sbjct: 411 TKSDEIRTIHLPGNIKNLSSLQNDIMFSEIMPL-------KKAVEHVEKHLIEQALKKYG 463 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSS 531 S R L + + + + ++ L+ D S Sbjct: 464 STRKVARAL----------KVNQSTIVRKIKKYKLSAGQELDVFDS 499 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 117/478 (24%), Positives = 188/478 (39%), Gaps = 28/478 (5%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 L LL R + E + ++ + E + Sbjct: 13 LNLLIVDDERVVREGCRDVAQTLG----FSTFTAENAEQAYKILDSTSVDVILLDLRLPG 68 Query: 104 EKEDYLIHITTGTHVAQICWFLLAEARY-LPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + I + A + ++ +P E+ I+ ++ Sbjct: 69 IGGLEALRQIKQRRPETIVIVVTGYATVQSAVQAMKHGAFDYVTKPFNMDELRILLDRVT 128 Query: 163 RYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + + + R+Q G+ R P R+ I K A + P+L+ G +G GK Sbjct: 129 GHLKLTTENRMLREQVKARHGFGGMVGRAPEMERLYRIITKAANSTH-PVLIMGESGTGK 187 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR + + + F+ V+C +L S LFG+VKGAFTGA+ S++GLL A Sbjct: 188 EVVARAVHYTGCYKDK---PFIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMA 244 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG +FLDEIGEL D Q+ LL+A++EK P G R V + +++A T RDL Q V +G Sbjct: 245 DGGTVFLDEIGELPIDLQSKLLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQG 304 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 FR DLY R+N+ T +P LR R++DI + + +ER TG + EA + L + Sbjct: 305 TFRRDLYFRLNVLTLRIPPLRDRKQDIPLLVGHFLERTERATGFQRNISDEALKLMLTY- 363 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 W GN REL + R + I + I Q A A Sbjct: 364 -----DWPGNVRELEHCLDRACALTSGPTINTLDLPTTIQNWHVQTQTVLAPQAPA---A 415 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 I M+ + ++ + +L + L + L +G Sbjct: 416 PTNGIVPIAEMEKQAILEAIERLHGDKLEAARLLGIG---------KTTLYRKLKEYG 464 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 104/479 (21%), Positives = 181/479 (37%), Gaps = 30/479 (6%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 + L+ D I V + V + + + D Sbjct: 1 MSQYNTTILIIDDNEEH-ANATAEAIQKVGYKCIVAT-----SGKAGLKIIETEEIDVVI 54 Query: 98 GYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 + I T A+I +Q +P + Sbjct: 55 TDLIMHDFSGMEILKATKEKLPEAEIILITGYGTVETAVDAMQKGAATFLLKPININHLR 114 Query: 156 -IIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 I+ + + N + + ++Q + +GI + +++ + +++ + A +L+ Sbjct: 115 AEINKLVEKQNLVRNNILLQKQLDEKYGLTGIIGNSASMQKVLTMVNQISG-TNATVLIT 173 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ I +H V +N A + + S LFGH KG+FTGA R Sbjct: 174 GESGTGKELIAKTIHNNSLRKH---NPLVILNSAAIPENILESELFGHEKGSFTGALYQR 230 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 +G A+ G FLDEIG++ QA LL+ +E+ GS+ + D +LIA T ++L Sbjct: 231 KGKFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSNESIEVDVRLIAATNQEL 290 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEA 393 L+ EGKFREDLY R+N+ LP LR+R EDI LD + + L + + EA Sbjct: 291 GNLIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIREFSRLYSKEILQITPEA 350 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 R+ L + W GN REL + M T + ++ + D I + Sbjct: 351 RKILLRYQ------WPGNIRELKNCIESMVVITTKKYLDVEDLPDHIEKKSDEMP----- 399 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + ++E + ++ + + D RL+ Sbjct: 400 -----VSHGLMAGMTMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKLDLYRLK 453 >UniRef50_C7PEX2 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PEX2_CHIPD Length = 653 Score = 487 bits (1254), Expect = e-136, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 171/369 (46%), Gaps = 35/369 (9%) Query: 160 DLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV-AIKSRAPILLNGPTG 218 D +A + E+ + L GI R+P F ++ I V A S +L+ G +G Sbjct: 310 DALSARIVARKRVEKPLIDNEVLFEGIVGRSPVFLSVLHSINMVSAAPS--SVLILGESG 367 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR I +++ + VNCA L + S LFGH KGAFTGA + R G Sbjct: 368 TGKELIARCIHRQSPRKNK---PLITVNCAALPAELIESELFGHEKGAFTGATDKRAGKF 424 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 A+GG +FLDEIGEL + Q LL+ ++EK F G + + D ++IA T R+L + V Sbjct: 425 EMADGGTIFLDEIGELPIESQVKLLRVLQEKEFERVGGSKVIKVDVRVIAATNRNLEKEV 484 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAW 397 AEG+FR DLY R+N++ LP LR+R+EDI + V++ + ++ + +A +A Sbjct: 485 AEGRFRLDLYYRLNVFPVELPSLRERKEDIPLLAQHFVDKLSEKLSRNITDISPDALKAL 544 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 ++ W GN RE+ + R T + ++ + + T Sbjct: 545 RSY------DWPGNIREMEHVMERSLLMTTGTILKQIMLP----------KMAAQPVGTT 588 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRKY 514 + A+ I + M++EH++ + + K +L + L Sbjct: 589 ISSADGNRIKTLEEMEIEHILQVLKSCKGKVCGVGGAAELLGLP---------PSTLNSK 639 Query: 515 LARFGLTWE 523 + + G+ + Sbjct: 640 IRKLGIKRD 648 >UniRef50_Q3A103 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A103_PELCD Length = 467 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 104/492 (21%), Positives = 197/492 (40%), Gaps = 33/492 (6%) Query: 32 CLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYAC 91 L ++E L+ +L ++L + L++ ++ E + FE + Sbjct: 3 LLPRREDLLEHPTNILIVDADQTLAKALEQMLSDQGHHVEKLCT-----GKAAFESLARK 57 Query: 92 LHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQS---SPPRKKEQP 148 + P+ + + + + + C ++ R L + + + P +P Sbjct: 58 TPELVILDLQLPDTDGWHVFEQV-SDLGDACPVVVVTGRELSEQAVTTLLNGPGDYLRKP 116 Query: 149 RGPGEVTIIDLDLSRYNAIASRFA-EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 E+ + + A Q+ + + I + +++E ++K+A Sbjct: 117 ISAEELAAVVQRTLENIRLRKELACLRSQKGGCYDQPSIVACSREMGQVLEMVDKIASSD 176 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 A + + G +G GK +AR I S F+ +NCA + S L GH KGAF Sbjct: 177 AATVFIQGESGTGKELVARAIHYQSAR---ASQPFMAINCAAVPQTLLESELMGHEKGAF 233 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 T A+ ++GL A+GG +FLDEIG++ QA LL+ +EE+TF G R + D +++ Sbjct: 234 TDAKNVKKGLFELADGGTVFLDEIGDMDPAMQAKLLRVLEERTFRRVGGTRDIKVDVRIV 293 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 + T RDL + + + FR DLY RI + +P LR+R++DI P ++ + + V Sbjct: 294 SATNRDLHKAMEDKSFRPDLYYRIGVIPVQIPPLRERRDDILPLAEFFIRQFNREFNKKV 353 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 R + +A + +W GN REL + R ++ ++ + E+ Sbjct: 354 RGISR-----MAQKILLEYSWPGNIRELRNVIERSVILECEEQLLVENLPRELVAQSVG- 407 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 + L + ++ E + A+ +L Sbjct: 408 -----DNIGPLNFQLPPEGVDIEDIERELIRQALEMAQGNQTQAAKLL---------RLG 453 Query: 508 ADRLRKYLARFG 519 D R + +FG Sbjct: 454 IDAFRYRMKKFG 465 >UniRef50_B5ER80 Transcriptional regulator, NifA, Fis Family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5ER80_ACIF5 Length = 545 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 43/388 (11%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 R + + +++ + + + + + + A +A +LL G +G G Sbjct: 176 AERNRLLQEKHRLQKELQKRYSIKNVIGNSRAMQAVFADVHQ-AAPGKATVLLRGESGTG 234 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +AR I L R + FV +NCA L S LFGH +GAFTGA + R+G Sbjct: 235 KEVIARAIHYLSPRRDKA---FVSLNCAALPESILESELFGHERGAFTGATQERKGRFEL 291 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG LFLDEIG++ QA LL+ ++E+ F G + + ++IA T R+L + V++ Sbjct: 292 ADGGTLFLDEIGDISPAFQAKLLRVLQEREFERVGGTQTRRVNVRIIAATNRNLEEAVSK 351 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAF 400 G+FR DLY RIN+ + LP LR+R+EDI +++ + R+ + + EA + ++ Sbjct: 352 GEFRADLYYRINVVSIFLPPLRERREDIPALIEHFLARYNAENQRKLTLTPEALQTMVS- 410 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE--------------------- 439 W GN REL V R AT I V + Sbjct: 411 -----CYWPGNVRELENCVERTATMMRGDIIRNLDVPCQRNQCLSMALRPLEGSHPIVTM 465 Query: 440 -INRLRYNWQESRPSALTALLGAE--AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFD 496 ++ + P + A + + + +I + + A +L Sbjct: 466 KLSSGMSVPPHAAPDVEGQVTDASGAGDGEGSLPLSERDRLIQAMDRCGWVQAKAARLLG 525 Query: 497 VSRQGKASVNDADRLRKYLARFGLTWEA 524 +L L + G+ + Sbjct: 526 ---------TTTRKLGYALNKHGIEVKK 544 >UniRef50_D2R3E8 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Planctomycetaceae RepID=D2R3E8_9PLAN Length = 465 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 98/483 (20%), Positives = 178/483 (36%), Gaps = 29/483 (6%) Query: 36 QESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDF 95 + ++RL++L +L E + ++ + E V P + +D Sbjct: 6 KNDKPLNRLKILFADDEAALQELMSLELPRMGHEVTVCP-----DGPTAVAALELNTYDC 60 Query: 96 ARGYEFQPEKEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGE 153 P + + ++ +P + Sbjct: 61 IIVDLDMPGMNGIQVIGKCKELAPDTDAVVLTGKSSFDSAIAALRFGAFDYLTKPCKLVD 120 Query: 154 VTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 + + ++ ++ + Q K+ + + +++ + I+KVA + + +L Sbjct: 121 LKALLHRVAAKREWVNKCRALKHQLERLEGKTELVGSSRAMDQVRKLIQKVA-PTGSTVL 179 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 + G TG GK +AR + + FV VNC L S LFGH KG+FTGA + Sbjct: 180 VLGETGTGKELVARAVHQQSLR---AEKPFVAVNCGALPESLIESELFGHRKGSFTGADD 236 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 R GL A+GG +FLDEIGEL QA LL+ +E G + D +++ T R Sbjct: 237 HRVGLFEVAHGGTIFLDEIGELPKSMQAKLLRVLESGEIRRVGDNNAFVVDVRVVCATHR 296 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNT 391 +L ++V G FREDL RIN + +P LR+R +DIE + + R F Sbjct: 297 NLPEMVEAGDFREDLMYRINTFELHIPPLRERLDDIEDLASHLLRRFLPTLKAGDTCFTP 356 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 EA + + W GN REL+ + + IT + + ++ Sbjct: 357 EAVQLL------EKHGWPGNVRELANVIEHASILCDKAPITPENLPQRLSGRIKPQ---- 406 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 L A ++++ + + + +S + + + Sbjct: 407 ------LTRARIAGPISLRDLEMQAIHEALDRHNGNKPEAAEELGISLKTLYNKLNQTTA 460 Query: 512 RKY 514 + Sbjct: 461 LEK 463 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 486 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 99/427 (23%), Positives = 184/427 (43%), Gaps = 43/427 (10%) Query: 106 EDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG------PGEVTIIDL 159 E +HI T +A+ + +Y+ A I + G E+ ++ Sbjct: 172 ESTRMHIVAKTGIAETAQLQKVKGKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYK 231 Query: 160 DLSRYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + ++ + + + I ++ N+ + +K A K+ + +L+ G + Sbjct: 232 KIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKK-AAKTNSNVLIRGES 290 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREG 276 G GK A I + G F+++NCA + D S LFG+ GAFTGA++ + G Sbjct: 291 GTGKELFAHAIHMES---ERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIG 347 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG +FLDEIG++ QA LL+ ++E+ G+ R D ++I+ T RDL + Sbjct: 348 KFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEK 407 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 ++ EG+FREDLY R+N+ T +P LR+R+EDI+ +Y +E+ + G + F+ EA Sbjct: 408 MIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMS 467 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGR-ITLDVVEDEINRLRYNWQESRPSA 454 + + W G R+L + R I I +Y ++S Sbjct: 468 CLMNYK------WEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDS---- 517 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 + L ++++ + ++ + ++SR L + Sbjct: 518 ---------DLNKLINQVEKDIILETLIYCNWNKTLAAKKLNISR---------TSLYEK 559 Query: 515 LARFGLT 521 +A+ + Sbjct: 560 IAKHNIA 566 >UniRef50_Q9K8Q5 Two-component response regulator in acetoacetate metabolism n=3 Tax=Bacillus RepID=Q9K8Q5_BACHD Length = 453 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 110/478 (23%), Positives = 194/478 (40%), Gaps = 36/478 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L S+ +L+ + V+ LH + D + Sbjct: 3 RILIIDDEPSICSSLQFALEDDYETEATTEVDKGLHI------IEQEPIDVVLLDLKIGK 56 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + I + + I+ +P E+ + Sbjct: 57 VDGLEVLQEIKRKKPETIVIMITAYGTIANSVKAIRLGAYSYLTKPIHMEELFSVLEQAL 116 Query: 163 RYNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 Y + + A Q+ + G+ ++ ++ IEKV + +L+ G +G GK Sbjct: 117 HYKKLNEQVAYLSQELEKKYGYEGMIGKSEAMTQVFHLIEKV-KNVDSSVLITGESGTGK 175 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR I + + + F VNCA + S LFG+ KGAFTGA +EG + A Sbjct: 176 ELVARAIHFSGKRKQEH---FEVVNCAAIPEHLLESELFGYEKGAFTGAATRKEGKFQLA 232 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 N G +FLDEIG++ QA LL+ +++K GS++ D ++IA T + L++ V EG Sbjct: 233 NRGTIFLDEIGDMPLALQAKLLRVLQKKEVTKLGSNKTEKLDVRVIAATNKSLQEQVKEG 292 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAF 400 FREDLY R+++ LP LR+RQED+ L + + G S++ F ++A+R LA+ Sbjct: 293 TFREDLYFRLHVIHIHLPPLRERQEDLPYLLQHFLHTFNQELGKSMKGFRSDAQRELLAY 352 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 + GN RELS V A I L+ + I + + + S + Sbjct: 353 Q------YPGNIRELSNIVESSMVIADGEYIELEDLPMFIREKGEGFAKQKGSLDDYIG- 405 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 ++ + ++A + + ++ +S +G LR L ++ Sbjct: 406 ------RPLKELEKDFILATLKHNDNHRKKTAEMLGISERG---------LRDKLKQY 448 >UniRef50_C0QUD7 Nitrogen assimilation regulatory protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUD7_PERMH Length = 456 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 180/395 (45%), Gaps = 27/395 (6%) Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFL-----KSGIATR 189 R++ + E P ++ I +++ + R ++ I Sbjct: 80 RIMSKNYFDYIEFPFSEKQLNSILEKINQKEENEKKLIYFRNRSAQDGVLCQYLCSIIGS 139 Query: 190 NPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCAT 249 +P + + +VA + P+L+ G TG GK LAR I +L + ++ F+ +NCA Sbjct: 140 SPQLREICKLAGEVA-PTDLPVLITGETGTGKELLARGIWKLSKRSNK---PFIAINCAA 195 Query: 250 LRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEK 309 + + S LFG+ KGAFTGA +++EG A+GG +FLDEIGEL Q+ LL+ ++E Sbjct: 196 IPENLLESELFGYEKGAFTGAEKTKEGKFELADGGTIFLDEIGELPLSAQSKLLRVLQEG 255 Query: 310 TFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 TFY G ++++ D +++A T RDL +VA+GKFREDLY R+NL LP LR+R+EDI Sbjct: 256 TFYRVGGNKEIKVDVRVMAATNRDLEDMVAKGKFREDLYYRLNLIHLHLPPLRERKEDIP 315 Query: 370 PNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG 429 ++ V ++ S+ A + W GN REL +V R Sbjct: 316 YIVECIVNKYNQKLSKSI-----AGASKEYMEVLKDQRWEGNIRELENTVVRSMILCRDN 370 Query: 430 RITLDVV----EDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 +T++ + E + + E E ++ +++ V K Sbjct: 371 ILTVNDLTFLREKRVKPQIEDNFEEILKNRVLASLEEGSIEEIKEKIDKIIVQTALEYTK 430 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 QL ++R LRK + ++GL Sbjct: 431 HNQVKASQLLGINRA---------TLRKKIQKYGL 456 >UniRef50_C1A9W9 NtrC family two-component response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9W9_GEMAT Length = 461 Score = 486 bits (1252), Expect = e-136, Method: Composition-based stats. Identities = 109/482 (22%), Positives = 186/482 (38%), Gaps = 38/482 (7%) Query: 47 LHDARSRSLF---ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 L D R L ET D + +TE E++ D P Sbjct: 5 LSDDAPRVLIVDDETSILDSLRILLKTEGFVPFTAHGGRQGVEQLQELRPDIVLTDVRMP 64 Query: 104 EKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + + + + ++P E+ I Sbjct: 65 DVSGVQVLSAARQVDPDVPVILMTAQATLQSAVQAVNEGAFYYIQKPFRNDELVAILRRA 124 Query: 162 SRYNAIASR---FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 + + + + +E ++ R+ + ++ E VA + + +L+ G +G Sbjct: 125 AEHRKLRAENQVLKQEIRRRERNASQRPIGRSKSWLEVLRLAETVA-PTDSTVLITGESG 183 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR I +L F+ +NC L S LFGHVKG+FTGA + + GL Sbjct: 184 TGKEVVARYIHDLSARTDNG---FMSINCGALPESLLESELFGHVKGSFTGAVKDKTGLF 240 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 +AN G FLDEIGE Q LL+A++++ P G+ VS D +++A T RDL + + Sbjct: 241 AAANHGTFFLDEIGETTPSTQVKLLRALQQREVIPVGATESVSVDTRVLAATNRDLEEEI 300 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS-LTGDSVRFNTEARRAW 397 G FR DL+ R+N+ LP LRQR +DI + + R A+ + N A A Sbjct: 301 KRGGFRADLFYRLNVIAVHLPPLRQRADDIPVLAESFLARSATLRHEEQKVLNEGALDAL 360 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 +A+ W GN REL ++ R + I+ D + + + R Sbjct: 361 MAYG------WPGNVRELENALERAVILCSGNTISADALPERVTARRAE----------P 404 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 L+ A + ++ ++ + + + + + L + LAR Sbjct: 405 LVSERAPVSPTLEAIERAYIQWVLQNEGGNKSRAADMLGID---------PSTLYRKLAR 455 Query: 518 FG 519 +G Sbjct: 456 YG 457 >UniRef50_A0LKM2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LKM2_SYNFM Length = 462 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 106/494 (21%), Positives = 182/494 (36%), Gaps = 36/494 (7%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE 100 + ++L R L +K + + E E A + D Sbjct: 1 MAGEKILVVDDDRGLRTLMKARLEGAGYRVTLAERGEEALTAAQEEVYSAAVLDLKME-- 58 Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 + + L + + + +P ++ Sbjct: 59 -EMDGMVLLEKLLLVQPYLPVIILTAYGTIAGAVEATKKGAYDFMTKPFEAKDLLYRLEK 117 Query: 161 LSRYNAIASRFAEERQQ-TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGA 219 ++ R + I + +++ Q+ ++A + + + L G +G Sbjct: 118 ALEVGSLRMEVERLRTLVRERYHFDNIIASSEKMQQVLLQVSQIAA-TDSTVCLYGESGT 176 Query: 220 GKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLR 279 GK +A+ + G FV +NC + S LFGH KGAFTGA ++++GLL+ Sbjct: 177 GKELIAKVLHLTSTRSR---GPFVAINCGAIPEGLLESELFGHTKGAFTGADQAKKGLLQ 233 Query: 280 SANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVA 339 A G LF+DEI EL Q LL+ ++ FYP G + V D +L+A T +DL + + Sbjct: 234 QAERGTLFMDEIAELTPALQVKLLRVFQDHEFYPVGGVQPVKVDTRLVAATNQDLWKAIQ 293 Query: 340 EGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWL 398 +GKFREDLY RI++ LP LR+R EDI + ++ ++ F+ +A + Sbjct: 294 DGKFREDLYYRIHVIPVYLPPLRERPEDIPLLAHHFLQHFNGTMNKNIPGFSPDAMHRLM 353 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 W GN REL+ V R A G I + + E + + E P Sbjct: 354 ------LHRWPGNVRELANVVERAVVLAREGNICAEHLLLEREAVSDSGTELPP------ 401 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 D + ++I + K + R K L ++ Sbjct: 402 ------LTAARDEFERAYLIQVLHSTKGNVSRAAAKAGRYRAE---------FYKLLRKY 446 Query: 519 GLTWEAVQDQHSSS 532 L +++ SS Sbjct: 447 DLDPATFKEEERSS 460 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 118/485 (24%), Positives = 195/485 (40%), Gaps = 32/485 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L R + E L + T + E E+ + D Sbjct: 4 RVLIVDDERGVCELLDAGLKKRGFRTAWRTSAAEAFELLGVEDFDVVVTDMTMRG---MS 60 Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 D I + + I++ +P + + R+ Sbjct: 61 GLDLCERIVQNRPDLPVIVITAFGSLDTATSAIRAGAYDFVTKPFELDALRLTVERALRH 120 Query: 165 NAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 A+ R+ D I + +P + + ++++A S IL+ G +G GK Sbjct: 121 RALREEVRRLRRAVADARGYEQILSGSPVMRSVFDLLDRIA-DSDTSILITGESGTGKEL 179 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR + + + GAFV VNCA + S LFGH +GAFT A+ +R GL A+G Sbjct: 180 VARAVHQRSRRSE---GAFVAVNCAAVPDALLESELFGHARGAFTDAKGARSGLFARAHG 236 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G LFLDEIGEL Q LL+A++E+ P G+D ++ D +LIA T RDL + E +F Sbjct: 237 GTLFLDEIGELPIGLQPKLLRALQERVVRPVGADEELPVDVRLIAATNRDLETAIEERRF 296 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 REDLY RIN+ LP LR R D+ + +E A++ ++ + A +A+A Sbjct: 297 REDLYYRINVVHVDLPPLRSRGADVLLLAQHFLEHFATVKARPIQGLSAPAAEKLMAYA- 355 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 W GN REL + R A IT+D + ++I R + + + Sbjct: 356 -----WPGNVRELQNCIERAVALARYDHITVDDLPEKIRTYRRSH--------VLVSSDD 402 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + + ++ +++ + + Q+ R L + L R+G+ Sbjct: 403 PTELVPMEEVERRYILRVLEVVGGNKSQAAQILGFDRA---------TLYRKLERYGMRV 453 Query: 523 EAVQD 527 D Sbjct: 454 GRSSD 458 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 103/486 (21%), Positives = 175/486 (36%), Gaps = 30/486 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L + +L+ + E V + D + P Sbjct: 4 RVLIVDDEDGIRFSLRGILEDEGYE-----VAEAETGEEGLKLATETPPDLIFLDIWLPG 58 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + T + I+ E+P +V I Sbjct: 59 MDGLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLSLEKVVISANKAL 118 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Y + R + + + + QI +VA + A +L+ G G GK Sbjct: 119 EYYRLRRENQALRSRLTQSTTVEMTGNSASIVELRGQIGRVA-PTDAWVLITGENGTGKE 177 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I + + + V VNCA + + S LFGH KGAFTGA ++ G A+ Sbjct: 178 IAARSIHASSRRKDK---PLVAVNCAAIPEELIESELFGHEKGAFTGAETAKTGKFEMAH 234 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G LFLDEI ++ QA +L+ ++E++F G + V D ++IA T + L +A G+ Sbjct: 235 QGTLFLDEIADMSLKTQAKILRILQEQSFERVGGHKTVKVDVRVIAATNKSLEDEIAAGR 294 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFA 401 FREDLY R+ + +P LRQR +D+ + + R + G V F +A A L + Sbjct: 295 FREDLYYRLRVIPLVVPPLRQRGDDVMLLIGEFMNRMTAEHGFRPVTFAPDACSALLCY- 353 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA---L 458 W GN REL V RM + +T ++ E +A + + Sbjct: 354 -----HWPGNVRELKNFVERMLIMHSGQTVTAAMLPPEYRCAGAGIMPQPCTAGPSDGMI 408 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + + + A ++ + + R L + L + Sbjct: 409 PEGVMDFKAARTAFEARFLEAKLQEFGGNITRLAEAIGLERSY---------LYRKLKSY 459 Query: 519 GLTWEA 524 + Sbjct: 460 NIQTPE 465 >UniRef50_A7HGB6 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Cystobacterineae RepID=A7HGB6_ANADF Length = 490 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 109/479 (22%), Positives = 181/479 (37%), Gaps = 28/479 (5%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDF-EEVYACLHDFARGYEFQ 102 + +L +L L+ + + L +P + + D A Sbjct: 10 VRVLVVDDEPTLLRALEALLGQKGYSV------VGLDSPIVATQRLAHEDFDVALLDIKM 63 Query: 103 PEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 P+ + + ++ ++S +P E+ + Sbjct: 64 PQLSGLELLSAVKHRRPEVEVIMMTGHATVETALAAVRSGAYDYLTKPFEDVELVARAVA 123 Query: 161 LSRYNAIA----SRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 + + R + ++ G+ + ++ IE VA S +L+ G Sbjct: 124 KAAERKMLFDRNRRLETQLREKEGGAPEGLVGNSAPIREVVRMIEAVAY-SATTVLVTGE 182 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK +AR + R Q FV +NC L S LFGHVKGAFTGA+ ++G Sbjct: 183 SGTGKELVARALHARSPRRAQ---PFVALNCGALTETLLESELFGHVKGAFTGAQRDQKG 239 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 L +A+GG +FLDEIG++ Q LL+ ++E GS V D ++IA T RDL + Sbjct: 240 LFDAADGGTIFLDEIGDIPPATQVRLLRVLQEGELKRVGSAESVRVDVRVIAATHRDLPR 299 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 LV GKFREDL+ R+N+ LP LR R +D+ + + R+A G VR +A Sbjct: 300 LVKAGKFREDLFYRLNVINIPLPSLRDRVDDVPLLAHHFLRRYAERLGKRVRALAPDAIE 359 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL 455 + W GN REL ++ R +T + + P+ Sbjct: 360 LLCGY------RWPGNVRELENAIERAVVLCRGEAVTGGDLPPAVTGRTAPLVREAPAGG 413 Query: 456 TAL----LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + R + +V + R + +A + + R V R Sbjct: 414 DEAVWLTMSYATAKEQSLRRFEKGYVETLMRHCDNNISAAARKAGMDRSNFKRVLRKYR 472 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 103/427 (24%), Positives = 190/427 (44%), Gaps = 33/427 (7%) Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 E PE E +L+ T T + ++ EA + + + +V Sbjct: 194 EVIPETELHLVSQTGKTQIGEVLRVKGREAVVMRYPINKDGRIIGAVSKVMFRDVNQFIT 253 Query: 160 DLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + R E +Q + + + ++ R+ E + +VA+ + +L+ G + Sbjct: 254 SAKTVYSSQRRIKGEPEQWASARYTVDNLIGKSHPMLRLKETVRRVALG-PSTVLIRGES 312 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REG 276 G GK LA + ++ G FV+VNCA + + S LFG+V+GAFTGA++ + G Sbjct: 313 GTGKELLAHSLHVGS---NRCLGPFVKVNCAAVPENLLESELFGYVEGAFTGAKKGGQIG 369 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 ANGG +FLDEIG++ QA LL+ ++EK G +R + +++A T R L Q Sbjct: 370 KFEQANGGTIFLDEIGDMPLLMQAKLLRVLQEKEIERLGDNRARHVEVRVVAATNRPLEQ 429 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 ++A+ FREDLY R+N+ T +P LR+R +D++ ++Y + ++ G ++ + +A Sbjct: 430 MIADNTFREDLYYRLNVVTLQIPSLRERIDDLKDLVEYFLAKYNHAFGLNITGLSADALE 489 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL 455 + + W GN REL V R I + + + + + + S +L Sbjct: 490 LFENY------NWPGNVRELENVVERAFNLVDGHIIDVMHLPPYLQKFGKSKRHSINKSL 543 Query: 456 TALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 +L ++++ E + ++ +SR L K + Sbjct: 544 PSL----------LEQVEKEAIADALSVTNGNKMQAAKILGISRAW---------LYKKI 584 Query: 516 ARFGLTW 522 A++G+ Sbjct: 585 AQYGIKA 591 >UniRef50_Q1PWJ3 Strongly similar to sigma 54 response regulator protein ntrC n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWJ3_9BACT Length = 463 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 107/489 (21%), Positives = 195/489 (39%), Gaps = 31/489 (6%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFA-RGY 99 ++R ++L + L + V+ E Sbjct: 1 MNRTKILVVDDEEGYRKVLYNALTERG-----FQVKTAASGEEALAEFKKNSFSLIVIDM 55 Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLAEARY-LPARLIQSSPPRKKEQPRGPGEVTI-I 157 + + + + A ++ +P E+ + I Sbjct: 56 KLPGSIDGLELLQRAKEMNNASILIMTAYGGIDTAVEAMRRGAFNYITKPFSIDEIMLNI 115 Query: 158 DLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + + + I + F + I + ++++ I +VA S A +L+ G + Sbjct: 116 ERMIEQNKIIEENNYLHSELEKAFGRKTIIGNSKEIQKVMDMISRVAFSS-ATVLITGES 174 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR I +H+ FV +NCATL S LFGHV+GAFTGA + ++GL Sbjct: 175 GTGKELVARAIHFNGNRKHKK---FVVINCATLSEHLLESELFGHVRGAFTGAIKDKKGL 231 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+GG LF+DEIG++ QA +L+ ++E F P G + D ++IA T + L + Sbjct: 232 FEEADGGTLFMDEIGDIPTPVQAKILRVLQEGEFIPLGDTVARNVDVRIIAATNQHLLKK 291 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 V + +FREDLY R+N+ +P LR+R+EDI + + +E++ ++ + E Sbjct: 292 VRDKEFREDLYYRLNVINIKMPPLRERKEDIPLLIKHFIEKYNKKENKQIKGLSPETEME 351 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 + W GN REL ++ R T I L V+ + + N Sbjct: 352 L------YKYHWPGNVRELENAIERAVTLTNEPIIPLHVILPIVRKEDGNNMLLDDLLSH 405 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 A + +D+F+ ++V+ I + + + RQ L++ L Sbjct: 406 PYKEARKKALDVFNT---KYVMNIINKNSGNVTNAARECKIERQY---------LQRMLK 453 Query: 517 RFGLTWEAV 525 ++ + + Sbjct: 454 KYAIKSRQI 462 >UniRef50_B8IZX3 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 RepID=B8IZX3_DESDA Length = 522 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 113/531 (21%), Positives = 192/531 (36%), Gaps = 41/531 (7%) Query: 10 VGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPE 69 + ++++ +Q K + + L+ E + Sbjct: 25 LAQIMNFTTDLTQALDKALKLMARQLHMMRG--AITLISPHTGEIRTEAGYGLKPAELRR 82 Query: 70 TEVVSVE------IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICW 123 V E IE P V R KE Q+ Sbjct: 83 GRYVRGEGITGRVIESGRPMYISNVSEEPLFLNRTRSRDLSKEGISFICVPIRLNDQVVG 142 Query: 124 FLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK 183 L + + ++ + I L + A+ ++ + + + Sbjct: 143 ALSVDHLLVDEATLE-----------DEMRLLTIVSTLLGHAALETQGRMDEETSSPLRP 191 Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 G + ++ QI +VA S + L G +G GK AR I F+ Sbjct: 192 RGFVGNSEGMQKVYAQIAQVA-PSVTTVFLQGESGTGKELAARAIHSGSAR---AGKPFI 247 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 +NCA L + S LFGH +GAFTGA +R+G A+GG LFLDE+GEL QA LL Sbjct: 248 SLNCAALPENLIESELFGHERGAFTGASATRKGRFELAHGGTLFLDEVGELSLMTQAKLL 307 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + ++E+ F G D + I T R+L +VA+ FR DL+ R+N++ LP LR Sbjct: 308 RVLQERAFERLGGMETHYVDVRFITATNRNLEHMVAKESFRRDLFYRLNVFPIYLPPLRG 367 Query: 364 RQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 R EDI P ++ + + A G +VR + +A W GN REL + R Sbjct: 368 RPEDILPLANHFIRKFAQANGRENVRLSLSVMDMLQRYA------WPGNIRELENVMERA 421 Query: 423 A-TFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAIC 481 G + + ++ S SA A G D D ++ ++ Sbjct: 422 VLLLGREGLVLPQHLPPALHGAHC-AGISGESACAARPGFSGSLQDQLDELERASIVEAL 480 Query: 482 RQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 ++ ++ + A + ++ + ++ + +H+ S Sbjct: 481 EFSQGQMGKAAASLGLTERIMAL---------RMKKYEINYKEFRPRHNRS 522 >UniRef50_A8ZU14 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=A8ZU14_DESOH Length = 468 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 100/474 (21%), Positives = 181/474 (38%), Gaps = 23/474 (4%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT 116 E R++ V E V + D + + Sbjct: 14 ELSMRELLDVMLSREGYKVACAEDGTQALSMLGEMKFDLVLCDVRLGDMSGIDVLKAAKK 73 Query: 117 --HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV-TIIDLDLSRYNAIASRFAE 173 H + + + +P E+ I LS R A Sbjct: 74 ANHDTVVIMISAYATTEVAVAAMNEGAYDFVPKPLDSAELKQTIIRSLSLRTVEQERQAL 133 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 + I +P + + +VA ++R IL+ G +G GK +AR I E Sbjct: 134 DNSLEDHLYFERIVGSHPKMKHIYNMVRQVA-QTRTRILITGESGTGKELIARAIHEQS- 191 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 + + FV VNC + + S LFGH KG+FTGA ++GL A+ G +FLDEIGE Sbjct: 192 --DRANHPFVVVNCGGIPENLMESELFGHRKGSFTGAVMDKKGLFTIAHKGTIFLDEIGE 249 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 L Q LL+ +++ F G ++S D ++++ T ++L Q V +G FREDL+ R+N+ Sbjct: 250 LSMPLQVKLLRVVQDGAFKQVGGTEEISVDARILSATNKNLSQEVIDGNFREDLFYRLNV 309 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRGNF 412 +P LR+R+ DI + VE+ + G ++ ++ A + ++ GN Sbjct: 310 IELNVPPLRERKSDIRVLAQFFVEKFSKDLGKEVIKLSSYALDML------EKYSFPGNV 363 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 REL + R +T+ I + + +++ R+ + ++ + Sbjct: 364 RELENLIERSVALSTTNIILPESLSLAVHKRRWIEGVPGRRFDLEEVTKGVALDEILADI 423 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + ++ + +L +S R L + + W+ + Sbjct: 424 ERAYLKKALESSGGNKNRAAELLGIS---------FRSFRYRLDKLNVPWDEEE 468 >UniRef50_Q2LRW3 Response regulator containing sigma 54 interaction domain n=3 Tax=Bacteria RepID=Q2LRW3_SYNAS Length = 457 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 184/482 (38%), Gaps = 33/482 (6%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L S+ ++L + E + V + L + P Sbjct: 5 ILIVDDEESICKSLGDILVDEGYEVQTV-----QSGEEAIRLLDEDLPGIVLLDIWLPGI 59 Query: 106 EDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + + T + + + + E+P ++ + Sbjct: 60 DGMEVLKTIKSLHPKLPVVMMSGHGTIETAVKATKLGAFDFIEKPLSLEKIILTLKHALD 119 Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 + + +Q+ + ++P ++E I VA + A IL+ G G GK Sbjct: 120 LSRLEEENVLLKQKINRD--YELTGKSPPIIELMEMISIVA-PTNAWILIMGENGTGKEL 176 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR I + VEVNCA + + S LFGH KGAFTGA E + G A+ Sbjct: 177 VARAIHRQSKR---ADKPMVEVNCAAIPEELIESELFGHEKGAFTGATEKKRGKFDIAHE 233 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G +FLDE+ ++ QA +L+ ++EK F G ++ + D +++A T +DL + + EG+F Sbjct: 234 GTIFLDEVADMSLKAQAKILRILQEKKFERVGGNKVIQLDVRVLAATNKDLEKEMEEGRF 293 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFAT 402 R+DL+ R+N+ +P LR R+EDI + + A G+ +A + Sbjct: 294 RQDLFYRLNVIPLKVPPLRSRKEDIPLLAERFLSDFALKEGEPGKTIQDDALALLM---- 349 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 + +W GN REL + R+A TS IT+ + P Sbjct: 350 --EHSWPGNVRELKNFIERLAIMTTSNVITVHDIPPLPRDGHKVEPFREPGFELLAGSFR 407 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 +D + +++ R+ + + + R L K + +GL Sbjct: 408 EAKMD----FEKQYISRKLREFDGNISKTAESIGLERSN---------LHKKIKAYGLES 454 Query: 523 EA 524 + Sbjct: 455 KN 456 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 165/377 (43%), Gaps = 35/377 (9%) Query: 154 VTIIDLDLSRYNAIASRF-----AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSR 208 V++I +S+ N RQ + + + I ++ +K A ++ Sbjct: 321 VSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQK-ASETT 379 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 + +L+ G +G GK +A+ I +++ FV VNCA++ + S LFG+ KGAFT Sbjct: 380 STVLIRGESGTGKELIAKAIHNNSNRKNK---PFVRVNCASIPENLLESELFGYEKGAFT 436 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA +S+ G A+ G +FLDEIG++ Q LL+ ++E+ G + D ++IA Sbjct: 437 GAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIA 496 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV- 387 T R+L +++ +G FREDLY R+N+ LP LR+R+EDI ++ + + ++ Sbjct: 497 ATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTIL 556 Query: 388 RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNW 447 +A + + +W GN REL + R I + + + Sbjct: 557 GIKQDALNLLIEY------SWPGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKS 610 Query: 448 QESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVND 507 L + ++I F+ + + + A ++ KS + ++ + + Sbjct: 611 FN---------LNIDIDHILPFEEYEKQIIEAAMKKYKSF-NKAGKALGLTHRTVSL--- 657 Query: 508 ADRLRKYLARFGLTWEA 524 ++ + + Sbjct: 658 ------KCKKYNIEVKK 668 >UniRef50_A9F1Z6 Nitrogen regulation protein NR(I) n=5 Tax=Myxococcales RepID=A9F1Z6_SORC5 Length = 493 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 119/496 (23%), Positives = 189/496 (38%), Gaps = 31/496 (6%) Query: 40 VIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGY 99 + +L L + L E V V + Sbjct: 9 PQNATRVLVVDDEPGLRQVLHIAFHRQGYE---VVVAPGARAAIEAIRQNPQPFPLVLTD 65 Query: 100 EFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTII 157 P+ + + ++ ++ +P P E+T + Sbjct: 66 LVMPDGSGIEVLTAAKARSNATEVIVMTAHSTVESALDAMRHGAYDFVTKPFSPAELTAL 125 Query: 158 DLDLSRYNAIASRFAEERQQTLDFLKS--GIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 ++I + R Q + R+ E I K+A +R +LL G Sbjct: 126 AAKALEKSSIVAENQRLRAQLERLDLPSREPLGTSAAMQRIAELIAKIA-PTRTTVLLTG 184 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 +G GK +AR I + + + F+ VNC L S LFGH KG+FTGA Sbjct: 185 ESGTGKERVARAIHDQS---DRAARPFLVVNCGALPEALMESELFGHEKGSFTGAGARSM 241 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 GL R A+GG L LDEIGEL A Q LL+ ++E+ P G+ +++ D +++A T RD+ Sbjct: 242 GLFREADGGTLLLDEIGELPAALQVKLLRVLQERKVRPVGAAAEIAVDVRVLAATNRDVE 301 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEAR 394 V +G+FR+DLY R+N+ LP LR+R DI + + R A+ G VR T+A Sbjct: 302 AEVRQGRFRQDLYYRLNVIRIELPPLRERPGDISRLAERFLRRFAAELGKDVRGLTTDAV 361 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA 454 RA A+ ++ GN REL + R A I L + + L + Sbjct: 362 RALDAY------SFPGNVRELENMMERAVALAGGPTIGLGDLPSAVAGLSASPAP----L 411 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKY 514 L L ++ ++ ++ + + A +L VS LR Sbjct: 412 LAQLPPEGCALDEVIGEVERRLILQALERTGGVRKAAAKLLGVS---------FRSLRYR 462 Query: 515 LARFGLTWEAVQDQHS 530 LA+ L + D Sbjct: 463 LAKHALAADGEGDDDP 478 >UniRef50_B8FD65 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FD65_DESAA Length = 447 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 90/369 (24%), Positives = 169/369 (45%), Gaps = 27/369 (7%) Query: 160 DLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 +++RY + + +E + L I ++ +++ QI++VA + + +L+ G +G Sbjct: 101 EMARYTTVFRQVSEVLNRIEARKLFPEIVAQSKAMRQVLSQIKRVA-PTDSTVLITGESG 159 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +A I Q + FV++NCA + S LFG+ KGAFTGA + G Sbjct: 160 TGKELVADSIHRHSQRNGRR---FVKINCAAIPDTLLESELFGYEKGAFTGAAARKPGKF 216 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 ANGG +FLDEIG++ + QA +L+ +EEK G R + D +++A T R+++++V Sbjct: 217 EQANGGTVFLDEIGDMPLETQAKILRVLEEKEVDRLGGVRPIPVDVRVVAATNRNIQKMV 276 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL 398 A+G FREDL+ R+N++ LP LR+R EDI ++ + + +S + A Sbjct: 277 ADGAFREDLFFRLNVFPIQLPPLRERPEDIPFLIEEFM-KFSS---KESTISPPAMHILC 332 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 A W GN REL +V F + + + + + L + Sbjct: 333 A------HQWPGNVRELRNAVESSLLFGK-EVVEPEHLPPALAGSMAVPTPA--GVLISG 383 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + ++ ++ +++ + A +L + + L + ++ Sbjct: 384 EDESLDLDFRLQELEKGILVEALKRSDGVQAQAARLLGIKER---------SLWHRVKKY 434 Query: 519 GLTWEAVQD 527 G+ ++ Sbjct: 435 GIDVSQIRR 443 >UniRef50_A6EHC4 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC4_9SPHI Length = 550 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 107/377 (28%), Positives = 170/377 (45%), Gaps = 39/377 (10%) Query: 157 IDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 I+ L + N + +E+ Q + S + ++ ++ + IE+VA S + + Sbjct: 204 IEEQLQQINTYKQQLEDEKSYLQEQINTRYHHSEMVGQSSAIRQVFDLIEQVAA-SDSTV 262 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G TG GK +AR I L + + ++VNCA L + S LFGH KG+FTGA Sbjct: 263 LILGETGTGKELVARSIHNLSPRKDKL---MIKVNCAALPANLVESELFGHEKGSFTGAS 319 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 E R G A+ G LFLDEIGEL D Q LL+A++EK G + ++ ++IA T Sbjct: 320 ERRIGKFELAHNGTLFLDEIGELSPDIQVKLLRALQEKEIERIGGKGVIKTNVRIIAATN 379 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNT 391 R+L + V EG FR DLY R+N++ T+P LR R+EDI+ + ++ A TG V+ T Sbjct: 380 RNLMKEVEEGNFRSDLYYRLNVFPITIPPLRNRKEDIQALSAHFIQHLAKKTGRQVKGMT 439 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESR 451 + T + W GN REL + R + I + + Sbjct: 440 KGV-----LKTLQEYPWPGNIRELEHLIERSILLSRGNIINEVHLP-------------K 481 Query: 452 PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDA 508 + L + I + +H++ I + K + +L + A Sbjct: 482 VEHMEDLTSNKEIRIKTIFENERDHILNILKLCKGKISGNGGAAELLSIP---------A 532 Query: 509 DRLRKYLARFGLTWEAV 525 L + +F + E V Sbjct: 533 TTLNSKIKKFNIKKEHV 549 >UniRef50_D0LTW0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LTW0_HALO1 Length = 472 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 118/486 (24%), Positives = 201/486 (41%), Gaps = 39/486 (8%) Query: 38 SLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFAR 97 V ++ +L ++ + L+ ++ +V + E+V A D Sbjct: 13 ERVREQFTVLVVEDDDAMRDVLQEELGDAGFRVQVAAGAR-----AGIEQVRAGPVDMVI 67 Query: 98 GYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 P+ + + + I I + + ++ +P E+ Sbjct: 68 TDLRMPDLDGFDLIRDINATDSPPPIIMVTAFGSIDTAIKAVKLGAHDYITKPFEIDELV 127 Query: 156 IIDLDLSRYNAIASRF-AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ A+ R +R+ + I + ++ + +VA + A +LL Sbjct: 128 LVIDKALAERALRRRVDRLQREVESRYGFDNIIAHSSEMRELLSLVSRVATST-ASVLLT 186 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +AR I GAFV VN A + S LFGH KGAFT AR+S+ Sbjct: 187 GESGTGKELVARAIHYNSPR---AEGAFVAVNLAAVPEALVESELFGHTKGAFTDARQSK 243 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 GL A+GG +FLDEI E+ A QA LL+A++E+ P G+ R D +++A T RDL Sbjct: 244 AGLFNEADGGTIFLDEIAEMAAPLQAKLLRALQEQEIRPVGATRPQRVDVRVVAATNRDL 303 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT--GDSVRFNTE 392 ++ +AEG FREDLY R+N+ LP LR+R +DI P ++ + ++ SVR E Sbjct: 304 QERMAEGDFREDLYYRLNVIQIELPPLRRRPDDILPLAEHFLALASARLTPPRSVRLAAE 363 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP 452 +R ++ W GN REL+ + R T I + + + + + N Sbjct: 364 TQRILHSY------PWPGNVRELANVIERGLTLCRGDLIAPEDLPNHVRERKSN------ 411 Query: 453 SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 L A +++ E + I ++ Q + R+ L Sbjct: 412 ----DFLSAAVARRMNLAQLEREFIERILKEEGGNKTRTAQRLGLDRK---------TLY 458 Query: 513 KYLARF 518 + L + Sbjct: 459 RKLDEY 464 >UniRef50_Q3AR86 DNA-binding protein Fis / transcriptional regulator, Fis family n=11 Tax=Chlorobiaceae RepID=Q3AR86_CHLCH Length = 549 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 95/360 (26%), Positives = 155/360 (43%), Gaps = 31/360 (8%) Query: 168 ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARR 227 R + I + I+K+A K+ A L+ G +G GK +A Sbjct: 219 EDRQVNAIPPPSPDRPANIIGNTKPMVSLYSMIDKIA-KTSATTLVLGESGVGKELVASA 277 Query: 228 ILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLF 287 I + F++ NCA L + S LFGH KGAFTGA +R G AN G +F Sbjct: 278 IHFKSRR---AEKPFIKFNCAALPENIVESELFGHEKGAFTGALATRHGRFEMANNGTIF 334 Query: 288 LDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDL 347 LDE+GEL QA LL+ ++EK F G + + D ++IA T R+L +L+ +G+FREDL Sbjct: 335 LDEVGELSLSVQAKLLRILQEKEFERVGGSKTIKVDVRVIAATNRNLEELIRQGQFREDL 394 Query: 348 YARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQA 406 + R+N++ T+P LR+R+ DI DY VE++ V R +T A + + Sbjct: 395 FYRLNIFPITVPPLRERKTDILLLADYFVEKYNKANQKGVRRISTTAIDMLM------RY 448 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL + R + I + + +A ++ Sbjct: 449 HWPGNVRELQNCIERAVILSEDNVIHGYHLPPTLQ-----------TAESSGTPYTGSLQ 497 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 D ++ E +I ++ + + +S + + +F + + + Sbjct: 498 QKLDAIEKEMIIEALKRTQGNMSRAAMQLGLSERIMGL---------RIKKFNIDYRKFR 548 >UniRef50_A6C332 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=2 Tax=Bacteria RepID=A6C332_9PLAN Length = 1035 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 107/391 (27%), Positives = 161/391 (41%), Gaps = 35/391 (8%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + + + L + AE D + I +P ++E + KVA Sbjct: 664 KVEKIDDQRRLVSVLQSELTNSQEIAERSTPAHDVQRGMIKGNSPAIRSVMETVRKVA-N 722 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S + +L+ G +G GK LA+ + E V VNCA L S LFGHVKGA Sbjct: 723 SESTVLVRGESGTGKELLAQAVHENSSR---HEKPLVRVNCAALSPSLLESELFGHVKGA 779 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA E R G ANGG LFLDEIG++ D Q LL+ ++E+ F G + D +L Sbjct: 780 FTGAHEDRVGRFELANGGTLFLDEIGDISLDTQVKLLRVLQERAFERVGGSETLHVDVRL 839 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 I T ++L Q + EG FREDLY R+N+ + TLP LR+R+EDI Y ++R A+ G Sbjct: 840 ITATHQNLEQRITEGLFREDLYYRLNVISITLPPLRERREDIFELAFYFLKRTANRLGKR 899 Query: 387 VR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + + +A A +A W GN R+L + R A S IT+ + ++ + Sbjct: 900 ISHIDPDAIEAL------ERAPWPGNIRQLENVIERAVVLAESEVITMKDLPADLLEQKK 953 Query: 446 NWQESRPSALTALLGAEAENIDLFDRM---------------QLEHVIAICRQAKSLSAA 490 + + E + + A Sbjct: 954 RLPARVFETKNVRSDTTRRIPLSEVEVITFPGSQNHVDQRLTEPEQLKLALAECDGNKAQ 1013 Query: 491 GRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 +L + R L ++ +T Sbjct: 1014 AARLLGMPRS---------TYYSKLKKYDIT 1035 >UniRef50_C6VVC1 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C6VVC1_DYAFD Length = 650 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 157/350 (44%), Gaps = 36/350 (10%) Query: 177 QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARH 236 ++ + + ++ +++ I +VA S +L+ G +G GK +A I +L + Sbjct: 329 RSESPVFDSMVGQSHLMLNILDLISQVA-PSDTSVLITGESGTGKEHVADTIHQLSPRK- 386 Query: 237 QFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGA 296 S FV+VNCA L + S LFGH KGAFTGA E R G A+GG +FLDEIG++ Sbjct: 387 --SKPFVKVNCAALPINLIESELFGHEKGAFTGATERRIGRFEQADGGTIFLDEIGDMPL 444 Query: 297 DEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTF 356 + Q LL+ ++++ G + + + ++I T R+L + +AEGKFR D+Y R+N++ Sbjct: 445 EVQVKLLRVLQQREIERVGGTQPIKINIRVITATNRNLERAIAEGKFRLDIYYRLNVFPI 504 Query: 357 TLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFREL 415 +P LR+R EDI P + + + TG ++ + A + + W GN REL Sbjct: 505 AMPALRERTEDIAPLVHHFIGYFGRKTGKNISGISDRALAMLMDYG------WPGNIREL 558 Query: 416 SASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLE 475 + R A I + A+ + A + + + Sbjct: 559 ENVIERSVLLAKGNSIDTVYLPAH-------------PAVEGIAKAGPPVLKNIFENERD 605 Query: 476 HVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 H+I++ + + + ++ + L + + G+ Sbjct: 606 HIISVLKACEGRISGENGAAKILAIP---------PTTLSSKMKKLGIKK 646 >UniRef50_A1VHE0 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Desulfovibrio vulgaris RepID=A1VHE0_DESVV Length = 454 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 103/438 (23%), Positives = 177/438 (40%), Gaps = 27/438 (6%) Query: 86 EEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPR 143 ++ D P + I + L + I++ Sbjct: 41 HALHRRPFDLVITDLRLPGMSGMELLDSIREMHPGTGVILITAFPEVELAVQAIKAGAFD 100 Query: 144 KKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKV 203 +P + I R+ + R + + +P ++ ++I + Sbjct: 101 FLCKPFQSDGLLIAVERFFRFLDLKRENDRLRGEREEGEF---IGESPAMLKVFDRIRAL 157 Query: 204 AIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHV 263 A P+L+ GP+G+GK +A + + R + F+++NCA L S LFGH Sbjct: 158 ADAC-VPVLVLGPSGSGKELVAGALHRRSKRRDR---PFIKINCAALPEQLLESELFGHE 213 Query: 264 KGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSD 323 KGAFTGA+++R G +A+GG LF DE+GE+ QA LL+ +E++ P G + + Sbjct: 214 KGAFTGAQQARIGKFEAADGGTLFFDEVGEMPLPLQAKLLRVLEDQEVTPVGGNTPRKVN 273 Query: 324 FQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLT 383 + + T R+L + +A+G+FREDLY RIN+ TLP LR+R D+ + + R +L Sbjct: 274 VRTVFATARNLEEAIADGRFREDLYYRINVVPVTLPPLRERGSDVALLTERFLRRFCALH 333 Query: 384 GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRL 443 + +AR A LA+ + GN REL +V T G I + + + I Sbjct: 334 ERQATLSEQARLALLAY------DYPGNVRELRNAVEHAVLLCTEGEIHVGHLPERIR-- 385 Query: 444 RYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 Q P+ A + R + ++ + L +SR+ Sbjct: 386 -AATQSMPPACDDDAGDTPASLAEGVARFERRRIMEALERTGGRKIQAADLLGISRK--- 441 Query: 504 SVNDADRLRKYLARFGLT 521 +L L + Sbjct: 442 ------QLWLKLKELSID 453 >UniRef50_B4U9N2 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Aquificaceae RepID=B4U9N2_HYDS0 Length = 502 Score = 483 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 93/358 (25%), Positives = 165/358 (46%), Gaps = 34/358 (9%) Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 R ++ + F G ++ + + I+K+A+ + + +LL G +G GK+ +A+ Sbjct: 178 EEQRQLLAKEFSDTFSIEGFVGKSEAIITLKDTIQKIAM-TDSTVLLLGESGVGKTLIAK 236 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I L + + + F+ VNCA + + LFG+ KGAFTGA S++G ANGG + Sbjct: 237 AIHTLSERKDK---PFISVNCAAIPETLLEAELFGYEKGAFTGAVHSKKGKFELANGGTI 293 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIGEL Q+ LL+ I+EK G+++ + + ++IA T +DL +VA G+FRED Sbjct: 294 FLDEIGELPLQSQSKLLRVIQEKELEKLGAEKSIFVNVRVIASTNKDLASMVARGEFRED 353 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQA 406 LY R+N+ +P LR+R+EDI + + +++ + EA A + + Sbjct: 354 LYYRLNVIPIRVPALRERKEDIPLLVKHFLDKFNKHYKKHINIEKEAMEALVNY------ 407 Query: 407 TWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENI 466 W GN REL + R+ IT + V Q PS Sbjct: 408 NWPGNIRELENLIERLVVINNKD-ITKEDVLLATKINSNKLQTDIPS------------- 453 Query: 467 DLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + + + E + + + + ++ ++ +L + ++ + E Sbjct: 454 -IIESTEKEAIKKALEKCGYVKSKAAKILGLT---------LRQLDYRIKKYNIPIER 501 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 116/517 (22%), Positives = 194/517 (37%), Gaps = 67/517 (12%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L +++ L ++ E +V + E V + D PE Sbjct: 8 KILVVDDEQNMRVALYEALSRGGYEVKVAE-----NGRMALEMVESEAPDLVVTDIRMPE 62 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + I + ++ +P + + Sbjct: 63 MDGIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIEETIKKVM 122 Query: 163 RYNAIASRFAEERQQ------TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 R + A + D + R+ HF R++E+ VA S+A +L+ G Sbjct: 123 RQQPRPAAVAPAAETGSPPPGRTDEGSRTVIGRDRHFLRLLERARTVAS-SKATVLVLGE 181 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK AR I + + +G FV +NCA L S LFGH KGAFTGA +++G Sbjct: 182 SGTGKEVFARFIHHVS---DRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMAKKG 238 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG L LDEIGE+ QA LL+ ++E+ G V D ++A T RDL + Sbjct: 239 KFELAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVVATTNRDLAE 298 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARR 395 V +G FR+DLY R+N+ LP LR+R +DI D+ +E+H+ ++ + AR+ Sbjct: 299 AVKDGTFRQDLYYRLNVIPIRLPSLRERPDDIFLLADFFIEKHSRRYNKPLKKLSAAARQ 358 Query: 396 AWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL-----DVVEDEINRLRYNWQES 450 +L + W GN RE+ + R + + L D + E + S Sbjct: 359 RFLDY------DWPGNVREMENLLERGVLLSNGDELELWDFWDDELPPEPAASAELPEPS 412 Query: 451 RPSALTALLGAEAENIDL-----------------------------FDRMQLEHVIAIC 481 P+ + AE E ++ + ++ Sbjct: 413 GPADAEPVDAAEPEASPPTVATEAVAAEASGSPDSAATLDSALAGRSLREVERQMILQAL 472 Query: 482 RQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 RQ ++ +S LR L + Sbjct: 473 RQTDDNRTHAAKMLGIS---------VRTLRNKLNEY 500 >UniRef50_A6TSF9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TSF9_ALKMQ Length = 462 Score = 483 bits (1244), Expect = e-135, Method: Composition-based stats. Identities = 97/474 (20%), Positives = 178/474 (37%), Gaps = 21/474 (4%) Query: 43 RLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQ 102 R +++ ++ +LK + + E E + + + Sbjct: 2 RKKIVIIDDEETIRLSLKEALMDLGYEAETAG-----DSWEGLKRIALFKPQAVFLDMRL 56 Query: 103 PEKEDYLIHITTGTHV--AQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 P+ + ++ I++ +P EV II Sbjct: 57 PDGNGLQLIQRIKEMDKDLEVVLMTAYGDIKTAVTAIKNGAFDYINKPFELDEVQIILTR 116 Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + + + ++ L I + + ++ ++ +L+ G TG G Sbjct: 117 IFDKLKLQKKIYLLEKEKLS-NDETIIGSHSSMKDVFSKVAILSENEDVTVLIRGETGTG 175 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A I + + +++NC + S LFG+ K AFTGA ++GLL Sbjct: 176 KEVVASAIHHNSPRKE---ASMLKINCGAIPTQLMESELFGYEKSAFTGATARKKGLLEI 232 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG +FLDEIGEL D Q LL+ +EE+ F G + + ++IA T +DL + + + Sbjct: 233 ADGGTVFLDEIGELSMDMQTKLLRFLEERKFKRVGGLEDIEVNIRVIAATNKDLEEAIEK 292 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLA 399 +FREDLY R+N+ LP LRQR EDI + + ++ + F EA+ L Sbjct: 293 KEFREDLYYRLNVVPMDLPPLRQRGEDILLLAQHYLAQYNQKFNKKIMDFTEEAKEKLLK 352 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSAL---T 456 + W+GN REL + R I L+ + EI + + Sbjct: 353 Y------HWKGNIRELKNVLERTIILNDDSYIRLEHLPIEIVGSEEKTVATNIQPMIKIG 406 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + + + ++ ++ R K + + +SR + Sbjct: 407 EDIPKDFSLENYLQEIEKSYIQTALRLCKGNHSKAAYILGISRFALKRKQEKYT 460 >UniRef50_C6HYC9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYC9_9BACT Length = 481 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 117/503 (23%), Positives = 198/503 (39%), Gaps = 54/503 (10%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYA 90 + + E+ + + L + + D EV ++ L + W E+ Sbjct: 4 ILVADDEAGIRETLSSIFRDEGYRVSVAASLD--EALRIGEVDPPDLALVDVWLGEDDGL 61 Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG 150 P H T T + ++S E+P Sbjct: 62 SYLQEIARLPDPPAVVVMSGHGTIDT----------------AVKALKSGAADYIEKPFS 105 Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 V + + + + R++ + + +P + E + +VA + Sbjct: 106 LDRVLTVAANALKLRGLERENRALREKVS--ARYEMVGDSPAIEALRELVARVA-PTEGW 162 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G G GK +AR + E R SG FV+VNCA + S LFGH KGAFTGA Sbjct: 163 VLITGENGTGKELVARSLHEGSVRR---SGPFVDVNCAAIPETLIESELFGHEKGAFTGA 219 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 R G A+GG+LFLDEIG++ QA +L+ ++E+ G R + D +++A T Sbjct: 220 LSRRPGKFEQASGGVLFLDEIGDMALSTQARVLRVLQERQLTRIGGTRSIPVDVRVVAAT 279 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRF 389 RDL ++A +FREDL+ R+N+ + +P LR+R DI +++ VE G F Sbjct: 280 NRDLPGMIARKEFREDLFYRLNVVSIRVPPLRERLSDIPILVEHFVEILCRDFGHRPKLF 339 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + EA A + TW GN REL +V R+ A I + +E I E Sbjct: 340 SREALEALC------ERTWPGNVRELKNTVERLLILAPGPVIEVRDLEPAIPGTTDRGAE 393 Query: 450 SR--------------PSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 + P + + + + DR + +V+ + + + A Q Sbjct: 394 ASRGETGEGRGGSPPDPGPGASGMEPDLPLREARDRFERGYVLGVLARCEGNIARAAQRL 453 Query: 496 DVSRQGKASVNDADRLRKYLARF 518 + R L + + ++ Sbjct: 454 GMDR---------TSLHRRIRQW 467 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 109/504 (21%), Positives = 193/504 (38%), Gaps = 40/504 (7%) Query: 39 LVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARG 98 + +R+ ++ D + L SV +VE ++ D A Sbjct: 1 MEHNRILIVDDEK-------LISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALL 53 Query: 99 YEFQPEKEDYLIHITTGTHVAQICWFLLAEARYL--PARLIQSSPPRKKEQPRGPGEVTI 156 P+ + + ++ ++ + R ++ +P + Sbjct: 54 DIRLPDADGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFNMEALRH 113 Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSG-IATRNPHFNRMIEQIEKVAIKSRA-PILLN 214 + + + R++ + + + + + I KV + A +L+ Sbjct: 114 VIDKAFEKRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMI-KVCADTDAKTVLIL 172 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +AR I F EVNCA + S LFGH KGA+T A + R Sbjct: 173 GESGTGKELVARAIHNHSAR---AEAPFAEVNCAAIPETLLESELFGHEKGAYTDASKRR 229 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 +G+ A GG +FLDEIG++ QA +LK IE K F G++ + +D ++IA T +DL Sbjct: 230 KGIFELAEGGTVFLDEIGDMPFSMQAKVLKVIETKRFRRLGAEEDIQADVRIIAATHQDL 289 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEA 393 +V E +FR DL+ R+N+ LP LR+R +DI + Y +ER G V + E Sbjct: 290 PAMVKERRFRGDLFYRLNVMNIPLPPLRERTDDIPSLVQYFIERLNEEYGRRVEGVSPET 349 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ----- 448 + W GN REL ++ R S +T + EI + Q Sbjct: 350 MAYLTGYG------WPGNVRELRNAIERTMMLEHSRILTPVFLNAEIKQQYETAQNKSLH 403 Query: 449 ----ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 S + + ++ + + + + +SR Sbjct: 404 VDSHASAQHSFARGHITIPTGGISLEELERQLIRMGLEISGGNQTKAAKYLKMSR----- 458 Query: 505 VNDADRLRKYLARFGLTWEAVQDQ 528 D LR + +FG++ + +D+ Sbjct: 459 ----DTLRYRMKKFGMSESSQKDE 478 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 99/378 (26%), Positives = 172/378 (45%), Gaps = 33/378 (8%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQ--TLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + ++ + +++ N+ S + E + + F ++ I +P R+ E I+K+A Sbjct: 225 QEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTENKIIGNHPSIVRLKEIIKKIA-P 283 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 +L+ G +G GK +A + G+F++VNCA + + + LFG+V+GA Sbjct: 284 YNTTVLIRGESGTGKELVAHALHVESGR----PGSFIKVNCAAIPENLFEAELFGYVEGA 339 Query: 267 FTGARES-REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 FTGA++ + G AN G +FLDEIG++ QA LL+ ++EK G + + + Sbjct: 340 FTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVLQEKEVERLGDRKTRKINVR 399 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T ++L +L+ + KFREDLY R+N+ + +P LR+R ED+ + Y +E+ G Sbjct: 400 VIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIEDLPLLIKYFIEKFNKEYGT 459 Query: 386 SVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 +V + E ++ + +W GN REL + R I + I Sbjct: 460 NVTGISPEVMDIFMNY------SWPGNIRELENVLERCFNLVEGKVIEKKYLPPYILGEE 513 Query: 445 YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 +E +L + + E + A +AK + L +SRQ Sbjct: 514 LKNKE---------FPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQW--- 561 Query: 505 VNDADRLRKYLARFGLTW 522 L K L F L Sbjct: 562 ------LHKRLKYFNLLP 573 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 159/372 (42%), Gaps = 40/372 (10%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 ++ D++R + E Q I + + + +E +A +L+ Sbjct: 254 VLVIRDITRLVDLERELQERNQ------FHNIIGASHKMQAVYQLLENLA-DFETTVLIT 306 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A+ + FV VNC+ L + S LFGHVKGAFTGA Sbjct: 307 GESGTGKELVAKALHHTGSR---AFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDY 363 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 +G ++A+ G L LDEIG++ Q LL+ ++E+ F G + + D ++IA T +DL Sbjct: 364 QGRFQAAHTGTLLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDL 423 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEA 393 ++ V G+FREDLY R+N+ LP LR+R+EDI D+ R ++ + + Sbjct: 424 KEKVGLGEFREDLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKV 483 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 A++ + W GN REL S+ R I+L+ + EI Sbjct: 484 MNAFMNY------HWPGNVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKK 537 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 A E +I ++ A +L VSR+ + + Sbjct: 538 QPAADEPNE--------------IIDALKRTGWNKAKAARLLGVSRK---------TIYR 574 Query: 514 YLARFGLTWEAV 525 + ++G+ A Sbjct: 575 KIEKYGIQSPAE 586 >UniRef50_C7PN78 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PN78_CHIPD Length = 541 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 97/384 (25%), Positives = 161/384 (41%), Gaps = 36/384 (9%) Query: 155 TIIDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRA 209 I+ L + E QQ L + I + R I + +VA S + Sbjct: 185 ETIEKQLQEIERFRQKLQNENHYLQEQQGLQNTFADIVGTSAEMQRRITILSRVA-PSES 243 Query: 210 PILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTG 269 +LL G TG GK AR I R ++VNCA L S LFGH KG+FTG Sbjct: 244 TVLLLGETGTGKEVFARAIHAGSPRRDNL---MIKVNCAALPPHLIESELFGHEKGSFTG 300 Query: 270 ARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAG 329 A + R G A+ LFLDEIGEL + Q+ LL+ ++EK G + + +++A Sbjct: 301 ATQRRIGKFELADHSTLFLDEIGELPLEFQSKLLRVLQEKEIERIGGKGSIKVNVRIVAA 360 Query: 330 TVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VR 388 T R+L + V G+FR DLY R++++ +P LR+R+EDI ++ ++R A+ + Sbjct: 361 TNRNLEEEVRAGRFRSDLYYRLHVFPIAIPPLRERKEDIPALANHFLQRFAANSRREAPS 420 Query: 389 FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQ 448 + +A + + W GN REL + R T+ I + Sbjct: 421 ISAKAMEGLMHYE------WPGNVRELEHLMERTLLLTTTPVIAKIDLP----------- 463 Query: 449 ESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA 508 +TA ++ I D M+ E+++ + + ++ + + Sbjct: 464 ---GVPVTASKDPDSTFILPLDLMEKEYILKVLKLCNG------RIAGPNGAAAKLKLPS 514 Query: 509 DRLRKYLARFGLTWEAVQDQHSSS 532 L + + G+ + +S Sbjct: 515 TTLNSRMKKLGIKKSHYVNVDGAS 538 >UniRef50_A6EHB3 Sigma-54-dependent transcriptional regulator n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHB3_9SPHI Length = 664 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 97/352 (27%), Positives = 153/352 (43%), Gaps = 36/352 (10%) Query: 176 QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 Q L++ I +P + + +VA S A +L+ G TG GK +A I + Sbjct: 342 QDRLEYAFPEIVGGSPQMQEVFNLMGQVA-PSTATVLILGETGVGKELIAGAIHQASDRA 400 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 + V +NCA + + S LFGH KG+FTGA + R G A+ +FLDEIGEL Sbjct: 401 ERQ---MVRINCAAIPANLIESELFGHEKGSFTGATDRRTGKFELADQSTIFLDEIGELS 457 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 D Q LL+ ++EK F G +S D ++IA T R+L V G+FR DLY R+N++ Sbjct: 458 LDLQVKLLRVLQEKEFERIGGSGTISVDVRVIAATNRNLLDEVEAGRFRMDLYYRLNVFP 517 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRE 414 +LP LR R+ DI ++ +ER+ +G + F+ + A + + W GN RE Sbjct: 518 ISLPSLRDRRADIPLLANFFLERYKMKSGKKISGFSQKVMSAMMKY------RWPGNIRE 571 Query: 415 LSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQL 474 L + R I + + A G+ I + + Sbjct: 572 LEHLIERQVILTEGTLIRDLDIPAAHQ-------------VMATDGSGQTEIKTIAQNER 618 Query: 475 EHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 +H+ ++ R +L V A L + + GL+ + Sbjct: 619 DHIFSVLRLCNGKISGKNGAAKLLGVP---------ATTLNSKIKKLGLSRQ 661 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 107/472 (22%), Positives = 191/472 (40%), Gaps = 26/472 (5%) Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHV 118 R+ E+E VE + E + D P + I Sbjct: 17 REGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGMEVLKAIKEIQPD 76 Query: 119 AQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGE-VTIIDLDLSRYNAIASRFAEERQQ 177 + + + +++ +P P E ++ I L L + ++ Sbjct: 77 LPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTPEEMLSTIRLALEQRVVDLGDLYLLKEL 136 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 ++ ++ +I +VA + + +L+ G +G GK +AR I + Q R Sbjct: 137 RDGEGFDRFVGKSHEMVKVYRRIMQVA-PTDSTVLITGESGTGKELVARAIHKHSQRRDH 195 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 FV V+C +L + S LFGHVKG+FTGA ++ GL + A GG LFLDE+ L Sbjct: 196 ---PFVAVDCTSLVENLLESELFGHVKGSFTGAMHTKTGLFKVAEGGTLFLDEVSNLSLT 252 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 QA LL+ ++E+ P G + + +L+A T R LR++VAEG FREDL+ R+N+ Sbjct: 253 TQAKLLRVLQEREVTPIGGTQPTPINIRLVAATNRSLREMVAEGTFREDLFFRLNIIPMD 312 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELS 416 LP LR+R DI + + V A G ++ A + ++ ++ GN REL Sbjct: 313 LPPLRERTGDIPLLVGHTVRTVAEEVGKDIKGVTAGAMQVLQSY------SFPGNVRELE 366 Query: 417 ASVTRMATFATSGRITLDVVEDEINRLRYNWQE--SRPSALTALLGAEAENID-LFDRMQ 473 + R A IT D +E + + P ++ L + + + ++ Sbjct: 367 NIIERAVVLAEDSLITPDDLELNHAASPTVLLDYTAVPLSVEELKETKRHLREQAVEDIE 426 Query: 474 LEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 V+ ++ + + + R ++ + + G++ Sbjct: 427 KAFVVNALQRNRGNITRAAEETGMLRPNFQAM---------MKKLGISARDY 469 >UniRef50_Q7M8U4 TRANSCRIPTIONAL REGULATOR (NIFA FAMILY) n=1 Tax=Wolinella succinogenes RepID=Q7M8U4_WOLSU Length = 512 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 108/517 (20%), Positives = 196/517 (37%), Gaps = 53/517 (10%) Query: 15 DYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVS 74 + G + + + +ES ++ ++ + + K + Sbjct: 41 EALGLLKRHFFLDKSVYYELSEESQTLNVFASAGLSKEQEFLASYKVGEGATG------- 93 Query: 75 VEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPA 134 + + P E ++ L + + +I L Sbjct: 94 LAAKAREPIIVENIHQNLLFLNKSGSRNEG--EISYLAVPALSQERILGVLGVSLT---- 147 Query: 135 RLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNA----IASRFAEERQQTLDFLK--SGIAT 188 + S E + R + R +EE+ + L S I Sbjct: 148 ---KHSMSDFDEMVTILTIAASLMAQARRIHQSIHEEKKRISEEKLYYKEELLKQSEIIG 204 Query: 189 RNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCA 248 +P R+ E I K+A S A +L+ G TG GK +A+ I + + ++++NCA Sbjct: 205 YSPPIKRVSEIIAKIA-PSSATVLIRGETGTGKELIAKAIHNYSPRKEK---PYIKLNCA 260 Query: 249 TLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEE 308 + + S LFGH KGAFT ARE+R+G A+GG LFLDE+G+L QA +L+ ++E Sbjct: 261 AIPENLLESELFGHEKGAFTDARETRKGRFELADGGTLFLDEVGDLSLPLQAKILRILQE 320 Query: 309 KTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDI 368 + F G + + D +++A T RDL ++V G FREDL+ R+N+ P LR R +D+ Sbjct: 321 QEFERVGGSKTIKVDVRIVAATNRDLEEMVRMGDFREDLFYRLNVIPIFSPPLRDRGDDV 380 Query: 369 EPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATS 428 Y +ER + +A + W GN REL S+ R+ A S Sbjct: 381 ILLSRYFLERFCKRHAKELHLTPKAEELLKHY------DWPGNIRELENSIERLVLLAPS 434 Query: 429 GRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 I +VV + + + E + + ++ +I ++ + Sbjct: 435 ESIDEEVVLSVLPGRVHGY------------TKEVKTRADLEELERSAIIKALKECHGIK 482 Query: 489 AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 + ++ + + ++ + E Sbjct: 483 LQAAKKLGITNRQIG---------YKIQKYEIEPEDY 510 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 29/360 (8%) Query: 161 LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + ++ + +++ + I ++ + + + VA +S++ +L+ G +G G Sbjct: 143 VEIFHDVTQLAELKKELKGRYAFGKIIGQSEKMRELFDLLPVVA-QSKSTVLIEGESGTG 201 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A I E + G F++VNCA L S LFGHV+GAFTGA S+ G Sbjct: 202 KELIAHAIHENSPRKD---GPFIKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFEL 258 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 A+GG LFLDEIGE+ A Q LL+ ++E+ F G + + D ++IA T RDL+ + Sbjct: 259 ASGGTLFLDEIGEISASMQVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDA 318 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLA 399 G FR DLY R+ + LP LR+R+EDI + + R+ + G + V + EA+ + Sbjct: 319 GTFRRDLYYRLRVVPLFLPPLRERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMN 378 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 ++ GN REL + +T I + + ++ + S+ + Sbjct: 379 ------HSYPGNIRELQNIIEHAVLLSTGRTIGVRELPRDLAPIPE------ESSFADVA 426 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 + + + + + + + + + +L + R L + L G Sbjct: 427 LSRSNALRTMEDV---MIRKAVEKTQGNMSQAAKLLGIGRS---------TLWRKLREMG 474 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 121/497 (24%), Positives = 208/497 (41%), Gaps = 42/497 (8%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIE----LHNPWDFE 86 L L + +D E++ ++ + L + + P ++ +++ + P+D Sbjct: 58 LILLDLQMPKMDGFEVMAALKADHSMDYLPVLVLTAQPNHKLQALQAGAKDFISKPFDLV 117 Query: 87 EVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKE 146 EV +H+ + E I + I E +L RKK Sbjct: 118 EVKTRIHNMLEVRLLYKKLEKNNITL------EDIVQKRTVELTKTNLQLGLEIEERKKA 171 Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIK 206 + T I + A +++ F I + +++ +++E+VA Sbjct: 172 EASLRDTYTQIKQLKDKLQA--ENTYLQKEVARQFNFDEIIGSSKLLSQVFQKVEQVA-P 228 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 A +LL G TG GK +AR I + + + V+C TL S LFG +GA Sbjct: 229 MHATVLLLGETGTGKGVVARAIHSRSSRKKR---PLITVDCTTLPVALIESELFGRERGA 285 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTG+ + G A+GG LFLDEIGE+ + QA LL+ I++ F GS R + D ++ Sbjct: 286 FTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERLGSPRTIKVDVRI 345 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T R+L + V GKFREDLY R+N++ TLP LRQR+EDI +++ + + G Sbjct: 346 IAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNHFLIKFNKKIGKQ 405 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 + T+ A T Q W GN REL +++ R + + + Sbjct: 406 IDIITQD-----ALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILD----------- 449 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 R + L E ++ ++ EH++ + +Q ++ Sbjct: 450 ----RFESFDKLATIEEPSMKALVELEYEHIVKVLQQTGW------RIEGNKGAALILGL 499 Query: 507 DADRLRKYLARFGLTWE 523 + LR + + G+T + Sbjct: 500 NPSTLRARMRKQGITRQ 516 >UniRef50_A5G4X7 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G4X7_GEOUR Length = 726 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 112/535 (20%), Positives = 195/535 (36%), Gaps = 75/535 (14%) Query: 28 RPTLCLCQQ--ESLVIDRLELLHDARSR---SLFETLKRDIASVSPETEVVSVEIELHNP 82 R + +Q E D L+ + + + + SPE ++I L P Sbjct: 234 REIIAALEQVREMFQFDGFGLISLSPDKGEAIVSHACYGEGIERSPE----KIDISLRFP 289 Query: 83 WDFEEV-------YACLHDFARGYEFQPEKED---YLIHITTGTHVAQICWFLLAEARYL 132 W E + + D + + + VA +++A Sbjct: 290 WTKERLLRGEMIHFNSREDVPEDAAVDRQSWQAMKVKANFSIPILVAGSVAYIIAAHDVR 349 Query: 133 PARLIQSSPPRKKEQPRGPGEVTIIDLDLS--------RYNAIASRFAEERQQTL----- 179 R + + + + + E + Sbjct: 350 ATRCLDEGLLLRLRLLGEIFANALFRCKSEAEFRNSCTEIQRLKEKLQLEAEYLQTEIIC 409 Query: 180 DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFS 239 I ++ ++++ +E+VA + + +L+ G TG GK +AR I EL R++ Sbjct: 410 SHCNEQIIGQSAALDKVLRLVEQVAS-TDSTVLICGETGTGKELVARAIQELSLRRNK-- 466 Query: 240 GAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQ 299 V+VNCA+L S LFG KGA+TGA + G A+G +FLDEI E+ + Q Sbjct: 467 -PIVKVNCASLPAALVESELFGREKGAYTGALTRQAGRFEVADGATIFLDEISEMSPELQ 525 Query: 300 AMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLP 359 A LL+ ++E F GS + + D ++IA T R+L + V +G FREDLY R+N++ +P Sbjct: 526 AKLLRVLQEGQFERLGSTKTIHVDVRVIAATNRNLAEEVKKGTFREDLYYRLNVFQIVVP 585 Query: 360 GLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSAS 418 LR+R EDI V G + R A + W GN REL Sbjct: 586 PLRERAEDIPLLAWAFVHEFNEKMGKKINRIAKSDMNALQNY------HWPGNVRELRNV 639 Query: 419 VTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVI 478 + +T + + + + G E L D ++ +H+ Sbjct: 640 IEYGVIVSTGNGLHVR-LPE-------------------GSGEEIARPLLMDEVERQHIT 679 Query: 479 AICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHS 530 + ++ ++ ++ L + + G+ QD S Sbjct: 680 GVLQRTGWRIKGENGAARILGMN---------PSTLYSRMQKLGIAVRNGQDGIS 725 >UniRef50_UPI00016C3E44 probable response regulatory protein (atoC) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3E44 Length = 465 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 106/487 (21%), Positives = 186/487 (38%), Gaps = 34/487 (6%) Query: 44 LELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQP 103 L++L ++L ET+ + V + ++ D Sbjct: 8 LQVLVIDDDKTLAETISESLDRRGHSCTVAT-----GGKAGVAKLEQEAFDVVLTDLKMA 62 Query: 104 EKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDL 161 + + A++ ++ ++P E+ + + Sbjct: 63 DLHGLEVVERCKQLRPEAEVYVITGFADVKTAVEAMKRGAAHYLQKPLDLAELRAVIENS 122 Query: 162 SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 ++ RQ F G+ +P R+++ ++ A S A +L+ G G GK Sbjct: 123 AKRVGTLRELR--RQLDEKFGFEGVVGNSPKMQRVLQLLKAYA-PSSASVLILGENGTGK 179 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 AR + R + F +NCA L S +FGH KGAFTGA R G A Sbjct: 180 DLAARALHTNGPRR---TKPFTAMNCAGLTESLLDSEMFGHEKGAFTGADRQRVGRFEHA 236 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG LFLDEIG++ QA LL+A+E G++ + D ++IA T +DL++ V G Sbjct: 237 HGGTLFLDEIGDMPLSLQAKLLRALENGEVVRVGTNEPLKVDVRIIAATNKDLQKEVEAG 296 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 +FR+DLY R+ + T LP LR+ +EDI + + ++ A V A + Sbjct: 297 RFRQDLYFRLKVGTVKLPPLREHREDIPQLVSHFLKEFARRDNKPVPKVAPAV-----WK 351 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 + W GN REL + M G +T D ++ ++ RP L+G Sbjct: 352 SFEGYDWPGNVRELRNLLASMMVLDLDGELTPDDFPED-PGVKPAGTAERPHGPDQLVGR 410 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 D ++ ++ +L ++S + L + + + Sbjct: 411 P------LDEVERYYIEKALDLTGGNREEAARLLNISER---------TLYRKIQEWKKG 455 Query: 522 WEAVQDQ 528 E ++ Sbjct: 456 GEKPPEK 462 >UniRef50_C1SIC3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIC3_9BACT Length = 540 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 108/535 (20%), Positives = 202/535 (37%), Gaps = 54/535 (10%) Query: 23 RWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSP--------ETEVVS 74 + S +R L + S+ + L + E P + VV Sbjct: 28 QHSLYRSLLQMSDTLSMERGLILLHDKDTNELFVEASIGLDNDEGPVKNMRYKADEGVVG 87 Query: 75 VEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLA------- 127 + P +V F +KE+ H Q L Sbjct: 88 KVFKYGIPILIPDV-QKEPMFLNKLGRNAKKEEISFIAVPIKHQNQTYGVLAVDKVVSKM 146 Query: 128 EARYLPARLIQSSPPR---KKEQP-RGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLK 183 + +++ + E+ I + SR + + T + Sbjct: 147 YSITTDVDILKMIATLMASFLHKVQFFTSEMEAIQQEKSRIEE--EKLKLIGEVTQKYQY 204 Query: 184 SGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 G+ +++++++ V S + +L+ G +G GK +A+ I R + FV Sbjct: 205 EGLVGSGRLMRKVLDKVQMV-TASDSAVLIRGESGTGKEVVAKTIHYNSNRRKK---PFV 260 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLL 303 VNCA + G+ S LFG+ KGAFTGA ++G A+GG +FLDEIG++ + Q+ LL Sbjct: 261 AVNCAAIPGELIESELFGYSKGAFTGAAGEKKGKFEQADGGTIFLDEIGDMPMEAQSKLL 320 Query: 304 KAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQ 363 + +++K G + V D +++A T ++L V G+FR DLY R+N++ LP LR+ Sbjct: 321 RVLQDKVVEKLGGTKPVQVDVRILAATNKNLEAAVQSGEFRLDLYYRLNVFAIFLPPLRK 380 Query: 364 RQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMA 423 R+EDI + ++ + + + EA A + + GN REL + R A Sbjct: 381 RKEDIPEIAQHILKNLSKRYNKNYTISPEAVTALMN------CNYPGNIRELENCLERSA 434 Query: 424 TFATSGRITLDVV-------------EDEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 A G I + E++++ + + Sbjct: 435 FTAGGGEIKTKHISCMRGEMCMSHFMEEQLSGSSTAITPQTGGIPDNDYSEADNELISGN 494 Query: 471 RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 + E V+ +A + A ++ D++ ++ + +F + + + Sbjct: 495 MDERERVVQALEKAGWVQAKAARMLDMT---------VRQMNYRIKKFNIKVKKI 540 >UniRef50_UPI00016C44AF cetoacetate metabolism regulatory protein atoC n=5 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C44AF Length = 490 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 106/458 (23%), Positives = 162/458 (35%), Gaps = 27/458 (5%) Query: 84 DFEEVYACLHDFARGYEFQPEKEDYL--IHITTGTHVAQICWFLLAEARYLPARLIQSSP 141 V D P+ + I + + + Sbjct: 37 GLATVARERPDAVILDVRLPDMSGLDAFLLIRETDPRLPVIVITAHGSTETAIEATKRGA 96 Query: 142 PRKKEQPRGPGEVTIIDLDLSRYNAIA---SRFAEERQQTLDFLKSGIATRNPHFNRMIE 198 +P ++ + + + I + P + + Sbjct: 97 FEYLLKPIDLHQLDEVLGRAFEMRLAQVAPTASGDAPPPEDSADTEQIVGQCPAMLDVYK 156 Query: 199 QIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMST 258 I ++A P+L+ G +G GK +AR + + FV +NCA + S Sbjct: 157 AIGRIA-PQDVPVLILGESGTGKELVARALYLHSPRSDK---PFVAINCAAIPDALLESE 212 Query: 259 LFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDR 318 LFGH KGAFTGA R G A GG +FLDEIG++ QA +L+ ++++ F G + Sbjct: 213 LFGHEKGAFTGADRRRVGKFEQAQGGTVFLDEIGDMPPAAQAKMLRLLQDQRFERVGGNE 272 Query: 319 QVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVER 378 V +D ++IA T RDL LV + KFREDL R+N +T TLP LR R DIEP + + V Sbjct: 273 SVQTDVRVIAATNRDLSALVRDSKFREDLLYRLNSFTVTLPPLRDRTGDIEPLVSHFVTA 332 Query: 379 HASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 +VR A A A W GN REL ++ A IT D + Sbjct: 333 ANRKLKKNVRGVDAA-----ALAVLESHRWPGNVRELQNAMRYAVVQAVGEVITPDCLPA 387 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDR----MQLEHVIAICRQAKSLSAAGRQL 494 + ++ D++ + + + A+ Sbjct: 388 SLRGAAAPPGDALELTALITSLLRVGATDIYRQVTHTVDRALLTAVLEHVHGNQKQAADR 447 Query: 495 FDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHSSS 532 +SR LR L GL E S Sbjct: 448 LGISR---------TTLRAKLQTLGLGVEKHVRSVDGS 476 >UniRef50_Q2RXL4 Transcriptional regulator, NifA subfamily, Fis family n=6 Tax=Proteobacteria RepID=Q2RXL4_RHORT Length = 733 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 109/408 (26%), Positives = 173/408 (42%), Gaps = 43/408 (10%) Query: 145 KEQPRGPGEVTIIDLDLSRYNAI--ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEK 202 E GE++ + LSR N R+ E + I +P ++EQ+E Sbjct: 344 VENALAYGEISRLKDQLSRENKQLAKERYYLEEEIRRTEDFGDIIGISPAIRGVLEQVEL 403 Query: 203 VAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGH 262 VA S + +L+ G TG GK +AR I L Q + + ++VNCA + S LFGH Sbjct: 404 VA-DSDSTVLILGETGTGKELIARAIHMLSQRKKRT---MIKVNCAAIPSALLESDLFGH 459 Query: 263 VKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSS 322 KGAFTGA + G A+ G LFLDE+G++ D Q LL+A++E+ G + + Sbjct: 460 EKGAFTGAIAQKSGRFELADRGTLFLDEVGDIPIDLQPKLLRALQEREIERVGGHQPIPV 519 Query: 323 DFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASL 382 D ++IA T RDL +V + FR DLY R+N++ +P LR+R+EDI DY + + A Sbjct: 520 DVRMIAATNRDLTGMVEKRLFRGDLYYRLNVFPILIPPLRERREDIPLMADYFMRKTARK 579 Query: 383 TGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITL-------- 433 ++ F+ E L W GN REL + R + L Sbjct: 580 MNRAIEAFSAETMDMLLNL------PWPGNVRELQNVIERAVILTKGPVLHLPATELRHH 633 Query: 434 ----DVVEDE-----INRLRYNWQESRPSALTALLGAEAENIDLF-DRMQLEHVIAICRQ 483 + E + S P L G+ DL + ++ + ++ + R+ Sbjct: 634 LAPSAALPSEDAVIPLRAAVLPSAASAPDPLPPPAGSSPNPGDLAGEAIERDQILRVLRE 693 Query: 484 AKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 + + R L + R G++ + V + Sbjct: 694 TNGIVGGPRGAAAHLGMKR---------TTLLSRMRRLGISPKEVDHR 732 >UniRef50_B9M8I4 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Geobacter RepID=B9M8I4_GEOSF Length = 455 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 104/484 (21%), Positives = 183/484 (37%), Gaps = 35/484 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L +++ TL+ + V + + N + D Sbjct: 4 ILIADDDKAIRRTLELHLTEVGYRVVTAANGSDAVNLALADTAIGHNIDLMLLDLRLTGM 63 Query: 106 EDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + + + + I + + I+ +P + + + Sbjct: 64 DGFEVLTLVKEKKPFLPIIMITAYDEMQTAIKAIRLGAIDHLGKPVDLDHLDEVIDKIFE 123 Query: 164 YNAIASRFAEERQQTLDFLKSGI-ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 +A++ + I R + + I VA SRA +L+ G +G GK Sbjct: 124 MSALSRTGVTFSDSFDPHFEQNIMVGRTRAMKEVYKTIGAVA-DSRATVLIQGESGTGKE 182 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 +AR I Q R++ F+ V C+ L S LFGH KGAFTGA ++ G A Sbjct: 183 MVARAIHFNSQFRNR---PFIAVACSALSPTILESELFGHEKGAFTGAIRTKPGKFELAQ 239 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEI E+ + Q LL+ I+E+ F G + +D +++A T ++L LVA G Sbjct: 240 GGTLFLDEISEISPEIQVKLLRFIQEREFERVGGIETIKADVRIVAATNKNLSTLVASGM 299 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FR DLY R+ + + LP LR+R+EDI + + +E+ TG V + Sbjct: 300 FRNDLYYRLKVVSIDLPPLRERKEDIPILVKFLLEKLHHETGKRVEIIPQ-----ETMNK 354 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 + +W GN REL ++ R + + + + E Sbjct: 355 ILEHSWPGNVRELENTLRRAVILSHGNMLLPESLHLE--------------EGCDGQERF 400 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + ++ EH+ + ++ ++ +SR L + + +GL Sbjct: 401 PLLLKPLHEVEREHIQNVLCYVRNEKKRAAEILGISRP---------TLDRRIKEYGLEE 451 Query: 523 EAVQ 526 E Sbjct: 452 EDKP 455 >UniRef50_C0QG59 Response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QG59_DESAH Length = 465 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 105/442 (23%), Positives = 176/442 (39%), Gaps = 26/442 (5%) Query: 88 VYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKK 145 + A D P+ + I + +++ Sbjct: 41 LGANEPDLILLDLRLPDMNGLEVLRQIRLMNRQIPTVMITAHGDVQSAVQAMKTGAFDYL 100 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDF-LKSGIATRNPHFNRMIEQIEKVA 204 +P E+ +I + + RQ++ + I +P + + ++K++ Sbjct: 101 NKPFDMEELELIIKKVLGEAQLVKEVEHHRQRSYKAVILENIIGDSPPMLELYKTVKKLS 160 Query: 205 IKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVK 264 +L+ G +G GK LA+ I L + F+E+NCA+L S LFGH K Sbjct: 161 HVKTTTVLIRGESGTGKDLLAKAIHNLNPRSGR---PFIEINCASLPEHLLESELFGHEK 217 Query: 265 GAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDF 324 GAFT A+ + GL+ AN G LFLDEIGEL QA LLK IE KTF G +VS + Sbjct: 218 GAFTDAKNRKTGLVEIANNGTLFLDEIGELSILLQAKLLKFIETKTFRRVGGTSEVSVNV 277 Query: 325 QLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG 384 +I T R+L Q + E FR+DL+ R+N+ P LR R+EDI DY ++ + G Sbjct: 278 FIITATNRNLEQAIREQTFRQDLFYRLNVVPLFSPPLRDRKEDILKITDYYLDHYCRKFG 337 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + A A W GN REL + R+ + IT + D + + Sbjct: 338 KDL-----LSMALDAQHIFLNYDWPGNVRELKNLIERLVILSDGATITGRHLPDGMIQPI 392 Query: 445 YNWQESRPSAL------TALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + G + ++ ++ + ++ +A ++ + +S Sbjct: 393 AASERENRFDPMHVFKQDFSRGEQIPMDEILTAVEKKMIVNALEKADNVKTRAAKALGIS 452 Query: 499 RQGKASVNDADRLRKYLARFGL 520 R L + ++R + Sbjct: 453 R---------YSLLRRISRLKI 465 >UniRef50_A0LFR7 Transcriptional regulator, NifA subfamily, Fis Family n=7 Tax=Deltaproteobacteria RepID=A0LFR7_SYNFM Length = 508 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 114/521 (21%), Positives = 193/521 (37%), Gaps = 51/521 (9%) Query: 10 VGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPE 69 + LD S R R + + ++ + ++R P Sbjct: 30 LQQTLD---ILSSRLGMERGMVSVLDLQTG--------EAWLDVARGVDVERGTIRYRPG 78 Query: 70 TEVVSVEIELHNPWDFEEVYACLHDFARG-YEFQPEKEDYLIHITTGTHVAQICWFLLAE 128 + + P + R +E+ + + L A+ Sbjct: 79 EGITGKVAQSGRPMGIANLGDEALFLDRTGARRSLNREELAFLCVPIFYQGRSVGVLSAD 138 Query: 129 ARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS--GI 186 ++ V + + + A+ + R+ + + I Sbjct: 139 KLARRVE-------DLDKEVEILSAVAELLGKVVHFRAVEEENSRLRRMLAEARRPTTNI 191 Query: 187 ATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVN 246 R+ ++ I++VA + +L++G TG GK +AR I + + G V+VN Sbjct: 192 IGRSKVIQEVLRAIDQVA-DTNTTVLISGETGTGKELVARAIHDNSRR---AKGPLVQVN 247 Query: 247 CATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 CA + S LFGH KGAFTGA R G A GG +FLDE+GEL QA LL+ + Sbjct: 248 CAAMPDTLLESELFGHEKGAFTGAVTRRRGRFEEAQGGTIFLDEVGELSPIAQAKLLRVL 307 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +E+ F P GS R V D ++I + +DL + VA G FR DLY R+N++ LP LR+R Sbjct: 308 QEREFQPLGSSRTVKVDVRVITASNKDLEKEVALGTFRSDLYYRLNVFPIFLPPLRERGP 367 Query: 367 DIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATF 425 DI DY V ++A V R T A + + W GN REL + R Sbjct: 368 DILLLADYFVLKYARELDKDVKRITTSAIDMLMCY------HWPGNVRELENCIERAVLL 421 Query: 426 ATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 A + + + Q L AL+ A + + + + + Sbjct: 422 AGGNAVDSWHLPPTLQMKPVGMQNVSRGKLEALVSA----------FERDLITDALKDVR 471 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + +L +++ + ++G+ + Sbjct: 472 GNQSQAARLLGTTKRIVQ---------YKVEKYGIDPRRFR 503 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 107/508 (21%), Positives = 175/508 (34%), Gaps = 56/508 (11%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L + +L+ + E V + D + P Sbjct: 4 RILIIDDEDGIRFSLRGILEDEGFE-----VLEAPSGEDGLALLARETPDLVFLDIWMPG 58 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + + + I+ E+P +V I Sbjct: 59 MDGLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAAQRAL 118 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 Y + R + R+P + QI +VA + A +L+ G G GK Sbjct: 119 EYGDLRRENEALRDSLPTAHADEMNGRSPVMETLRGQIARVA-PTDAWVLITGENGTGKE 177 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I + + V VNCA + + S LFGH KGAFTGA ++ G A+ Sbjct: 178 LAARAIHAGSRRADR---PLVAVNCAAIPEELIESELFGHEKGAFTGADSAKAGKFEMAH 234 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G LFLDEIG++ QA +L+ ++E+ F G R + D ++IA T ++L +A G Sbjct: 235 KGTLFLDEIGDMSLKTQAKILRILQEQQFERVGGHRTMRVDVRVIAATNKNLEDEIAAGT 294 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG-DSVRFNTEARRAWLAFA 401 FREDLY R+ ++ LP LR+R+ D+ +D +R A G F +A+ A Sbjct: 295 FREDLYYRLRVFPLVLPPLREREGDVPLLIDLFAQRLARDYGVRPATFAPDAQEAL---- 350 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN--------------- 446 + W GN REL V RM +T ++ E Sbjct: 351 --ARYPWPGNVRELRNFVERMLILHAGLEVTRSMLPPEFLPRSGAGMNGSPGAATAAGGR 408 Query: 447 --------------WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGR 492 + ALL + + +++ A + Sbjct: 409 AASGTGGATGQGGDPLPDHLPDMAALLAPGMDLKAARAAFEAQYLAARLAECGGNVTRLA 468 Query: 493 QLFDVSRQGKASVNDADRLRKYLARFGL 520 + + R L + L + + Sbjct: 469 EAVGIERS---------HLYRKLKGYNI 487 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 480 bits (1237), Expect = e-134, Method: Composition-based stats. Identities = 122/485 (25%), Positives = 201/485 (41%), Gaps = 30/485 (6%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 LL L + LKR + P+ V++ + D PE Sbjct: 6 LLIVDDEEDLLQLLKRSLE---PDLG-CEVKVASSGGEALNVLEREPVDLLLVDMKMPEM 61 Query: 106 EDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI-IDLDLS 162 + + G + L + I+ +P + + ++ L Sbjct: 62 NGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPFDHETLVLSLNKALE 121 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 R + +R + + ++ R+ E I+ VA K+ +L+ G +G GK Sbjct: 122 RSRLLRENLNLQRHVQMHEAFQNLVGKSARMQRVYEAIQMVA-KTDLTVLITGESGTGKD 180 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 R I L Q R S FV VNC + + S LFG+ KGAFT A ++R GL + A+ Sbjct: 181 LACRAIHALSQRR---SNPFVAVNCPAIPENILESELFGYRKGAFTHATQNRTGLFQEAH 237 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 G +FLDEIG++ + QA LL+ ++EK P G + VS D +++A T RDL + G+ Sbjct: 238 KGTIFLDEIGDISPNIQAKLLRVLQEKVIKPLGDTKSVSVDVRVVASTNRDLGDRIRRGE 297 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FREDL+ R+N+ +P LR+R EDI +++ +E+H + + E +L Sbjct: 298 FREDLFYRLNVLPIVMPSLRERPEDIPLLVNHLIEKHCAALNRPRKSVAPELTEIFL--- 354 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGA 461 +A W GN REL + R FA I + V + PS A Sbjct: 355 ---RAPWPGNVRELENVIVRGLLFAPRDEILPEDVGFHRPVKGRIPGKDAPSTNVPYKDA 411 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + E + F E+ + + + +L + RQ L++ L R+G+ Sbjct: 412 KEEALRGFHA---EYFGGVLTATRGNVSHAAKLCGLERQA---------LQQLLRRYGIR 459 Query: 522 WEAVQ 526 +A + Sbjct: 460 SDAYR 464 >UniRef50_B8FM80 PAS modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FM80_DESAA Length = 465 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 112/467 (23%), Positives = 191/467 (40%), Gaps = 24/467 (5%) Query: 53 RSLFETLKRDIASVSPETEVVSVEIELHNPWDFE--EVYACLHDFAR----GYEFQPEKE 106 +++ +T++ + VSPE +VSV + EV E Sbjct: 11 KTVVDTIQDGVMIVSPEGTIVSVNKGFETITGYSQSEVLGQSCALLGCSSCEIARNAEGC 70 Query: 107 DYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNA 166 + + G Q C + + +P ++++++ K + + G V I Sbjct: 71 HWCVMFKHGRLRRQRCALIRKDG--IPVQIVKNASVLKDGEGQIIGAVETITDITDLTTK 128 Query: 167 IASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLAR 226 + + ++ G+ + + E I A +S AP+++ G +GAGK +A+ Sbjct: 129 ESLIASYRQELDAQDRFYGMIGASAPMQALFELIRN-AGQSDAPVIIFGESGAGKELIAK 187 Query: 227 RILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGML 286 I E +++VNCA L S LFGHVKG+FTGA REG +A+ G + Sbjct: 188 AIHEAGSRSQ---FPYIKVNCAALNESLLESELFGHVKGSFTGAHRDREGRFEAADKGDI 244 Query: 287 FLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRED 346 FLDEIG+L Q LL+ +EEK G + + D ++I+ T RDL+ L+++G+FRED Sbjct: 245 FLDEIGDLPLSTQVKLLRVLEEKVVERVGDHKPIQVDVRIISATNRDLQALISKGEFRED 304 Query: 347 LYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQ 405 + RIN+ P LR+R+ DI R +G + + EA A + Sbjct: 305 FFYRINVIPLRAPSLRERKGDIPLLARSFFNRIRMKSGKDIHGISREAMDALANY----- 359 Query: 406 ATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAEN 465 W GN REL +++ I + I + G Sbjct: 360 -NWPGNVRELKSALEFAFVSCHEDLIEPRHLPAPIAAEPDCAPPQPVPVQSRGPGG---- 414 Query: 466 IDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 D+++ +I AK + ++ +SR + +L Sbjct: 415 -ATLDQVKRTRLIDALTSAKGNQSEAARILGISRTSVWAQVKRYQLN 460 >UniRef50_Q1PYB5 Similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYB5_9BACT Length = 645 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 122/541 (22%), Positives = 206/541 (38%), Gaps = 60/541 (11%) Query: 6 AFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRSL-FETLKRDIA 64 V T L R + ++ + T + Q + +L D + R L + Sbjct: 144 VVCMVVTDLTEQKRNEEMLAEEKLTTQILNQA----AEIFVLCDPQGRILRASQSTSSLF 199 Query: 65 SVSPETEVVSVEIELHNPWDFEEVY--ACLHDFARGYEFQP---EKEDYLIHITTG--TH 117 SP +V L P + A F E + E Y ++ Sbjct: 200 GRSPLFQVFDEAFHLLYPDGMPFILLPAMSGKFLHAVEVNFKHGDNETYSFLLSANPLIT 259 Query: 118 VAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD--LSRYNAIASRFAEER 175 ++ R ++ S + ++ E ++L LS + R E Sbjct: 260 HKGAIGIVVVMVDITERRKMEDSRQKDHDKLEQQVEERTLELRTALSEIKTLKDRLEAEN 319 Query: 176 -----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 + + I ++ ++ + E+VA + A +L+ G TG GK +A I + Sbjct: 320 IYLRHENKRRHHFAQILGQSDSLKYVLYRAEQVA-PTNATVLILGETGTGKELIAFAIHD 378 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 + + + + VNCA L G+ S LFG KGAFTGA R G ANG L LDE Sbjct: 379 MSPRKER---PMITVNCAALPGNLIESELFGREKGAFTGADTRRIGRFEVANGSTLCLDE 435 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IGEL + QA LL+ I+ F GS + D +++A T R+L + + G+FR+DLY R Sbjct: 436 IGELPLELQAKLLRVIQHNEFERLGSPHTIKVDVRIVATTNRNLEEEIRNGRFRQDLYYR 495 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFATSPQATWR 409 +N++ T+P LRQR+EDI + VER++ G + EA +A + W Sbjct: 496 LNVFPITVPPLRQRKEDIPLMVHAFVERYSRKLGKQITSIQKEAMKALQDY------PWP 549 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + + R + L L A + + Sbjct: 550 GNVRELESIIERAVILCPGPVLQLAD------------------KLEISSPAFSSTVRTL 591 Query: 470 DRMQLEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + + + ++ I + + + + LR + + G+ + Sbjct: 592 EETERDQILKILSETRWRIEGKNGAAAILGIH---------PSTLRARMHKLGIVRPETK 642 Query: 527 D 527 + Sbjct: 643 E 643 >UniRef50_B8K7S4 Polar flagellar protein FlaK n=2 Tax=Gammaproteobacteria RepID=B8K7S4_VIBPA Length = 488 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 104/518 (20%), Positives = 187/518 (36%), Gaps = 69/518 (13%) Query: 41 IDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYE 100 + +L ++ D L + V + E ++ + D+ + +A Sbjct: 4 LAKLLVIEDDAQAR--TNLSNILEFVGEQCE--AISSDQVEEIDWSAI------WAGCIV 53 Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 + +++ A L+A P + + P + Sbjct: 54 GSVAGGNLAPNLSEKLARANHVPLLIAGKHSYPVDELTH----YVGELDFPLNYPQLSEA 109 Query: 161 LSRYNAIASR--FAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L R + L + ++ + IE+V + A +L+ G +G Sbjct: 110 LRHCKDFLGRKGMNVVSSARKNTLFRSLVGQSHGIKEVRHLIEQV-SSTEANVLILGESG 168 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR I R SG FV +NC + D S LFGH KGAFTGA SR+G Sbjct: 169 TGKEVVARNIHYHSTRR---SGPFVPINCGAIPPDLLESELFGHEKGAFTGAITSRKGRF 225 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 A GG LFLDEIG++ Q LL+ ++E+ F G + + D ++IA T R+L ++ Sbjct: 226 ELAEGGTLFLDEIGDMPMPMQVKLLRVLQERCFERVGGNTTIKVDVRVIAATHRNLESMI 285 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL 398 + FREDLY R+N++ +P LR R++DI L + R + + F + + + Sbjct: 286 EDESFREDLYYRLNVFPIEMPALRDRKDDIPLLLQELMTRMEAEGAQPICFTPRSINSLM 345 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES-------- 450 + W GN REL+ V RM + + ++ + + + Sbjct: 346 ------EHDWPGNVRELANLVERMIILYPNSLVDVNHLPTKYRYSDIPEFQPGYNTGRTV 399 Query: 451 --------------------------RPSALTALLGAEAENIDLFDRMQLEHVIAICRQA 484 +A L ++ +++ + Sbjct: 400 EEQERDAFYDIFSEDFSLESNDLFQDSEAAPQNLPPEGVNLKEMLADLEVNMINQALEAQ 459 Query: 485 KSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + A + + R L + + ++ L Sbjct: 460 GGVVARAADMLGMRR---------TTLVEKMRKYNLQR 488 >UniRef50_B5EFV3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B5EFV3_GEOBB Length = 482 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 97/463 (20%), Positives = 167/463 (36%), Gaps = 42/463 (9%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLA--EARYLPARLIQSSPP 142 + V + + A P+K + + + + ++ Sbjct: 39 LKRVISDRPNVAIMDISLPQKSGIEVLKEAKKIDPGLAVIMATGYKTTQNAIEAMKHGAF 98 Query: 143 RKKEQPRGPGEVTIIDLDLSRYNAIASRF---AEERQQTLDFLKSGIATRNPHFNRMIEQ 199 +P ++ N ++ + E Q D + + +P + + Sbjct: 99 DYVTKPFDMTKLKGAVKKALECNLLSRKVRYTRERPQVEEDLTEDLMIGSSPEMIEIWKM 158 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 + VA S A +L+ G +G GK LAR + + +++ F+ VNCA L S L Sbjct: 159 VGTVA-DSDATVLIQGESGTGKELLARAVYNNSKRKNR---PFLAVNCAALPEALLESEL 214 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFT A R G NGG +FLDEIGE+ Q L+ +E + F G + Sbjct: 215 FGHEKGAFTDAHSRRIGKFEQCNGGTIFLDEIGEMSQANQGKFLRVLENQEFERVGGNET 274 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T + L V E FR DLY R+ + F LP LR R EDI ++ V++ Sbjct: 275 IKVDVRVIAATNKSLITNVKEKTFRMDLYYRLRVVNFFLPPLRDRAEDIPLLVELFVKKF 334 Query: 380 ASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 + G +++ E + W GN REL + F + E Sbjct: 335 SKKYGKNIKAVAPETLAMLTS------HPWEGNIRELKNVINSATVFCRGDILVPGDFES 388 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDR-----------------MQLEHVIAIC 481 + + +A ++ ++ + Sbjct: 389 FLTAKAGFKEVDLEAAGDDYYEVFWSMLEPVFDGICQKNKGAIYESVNMGLEKALIHMAM 448 Query: 482 RQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 ++ + +L +SR + LR L R+ + Sbjct: 449 EKSNNNQVFAAKLLGISR---------NTLRDRLERYRIGAAD 482 >UniRef50_A1AUC3 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=A1AUC3_PELPD Length = 465 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 177/449 (39%), Gaps = 31/449 (6%) Query: 85 FEEVYACLHDFARGYEFQPEKEDYLIHIT--TGTHVAQICWFLLAEARYLPARLIQSSPP 142 E++ D + + + + + ++ Sbjct: 44 LEQLDRREFDLILTDLKMQGQSGLDLLERVLSDDPQQCVILMTAHGSVDSAVEAMRMGAF 103 Query: 143 RKKEQPRGPGEVTI-IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIE 201 E+P + + + R + +++ + +P + + Sbjct: 104 DYLEKPLERDNLVLTLQRAFERIGLVRENRVLQKRVASTTPIPSMLGDHPRMAEVFRVVA 163 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 K+A + + +L+ G +G GK +AR I E Q R F+ +NCA + S LFG Sbjct: 164 KIAA-TTSTVLIVGESGTGKELVARAIHEGSQRRD---NPFMAINCAAIPETLIESELFG 219 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 H KG+FTGA G+ +ANGG +FLDEIGE+ QA LL+AI+EK G + Sbjct: 220 HEKGSFTGAHARELGVFEAANGGTVFLDEIGEMNVSMQAKLLRAIQEKEVRRVGGRVNIP 279 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS 381 D ++I+ T ++L Q + G FREDLY R+N+ LP LR+R D++ ++ V++++ Sbjct: 280 LDVRIISATNKELEQEIRRGSFREDLYYRLNVIRINLPPLRERGSDVKTLAEFFVKKYSL 339 Query: 382 LTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 TG V + A + + + +W GN R+L + + R A S I + EI Sbjct: 340 ATGIDVEGISRPALKLLMNY------SWPGNVRQLESVIERAVLMAESSVIEPGDLPAEI 393 Query: 441 NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + + ++ +I +A + L +S Sbjct: 394 TSTSLLAGVVPFDLPPEGID--------METLEKNLIIKAMERADWVIGKAAPLLGMS-- 443 Query: 501 GKASVNDADRLRKYLARFGLTWEAVQDQH 529 L+ L +F + + ++ Sbjct: 444 -------YKTLQYRLEKFAIERPDRRQRN 465 >UniRef50_C0GSN4 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSN4_9DELT Length = 519 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 97/440 (22%), Positives = 191/440 (43%), Gaps = 22/440 (5%) Query: 80 HNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQS 139 P+ ++ + EKE T L + + ++ Sbjct: 91 GKPFIVPDIAKEPLFLDKTGSRSMEKERISFAGVPVTLQGTTVGVLTVDRLFDQDISLEE 150 Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMI 197 + ++ + R + + L I ++ ++ Sbjct: 151 DIQLLSIVAAMVAQFVSLNRQVKDREENLRRENQNLKTRLSSSFQRFFIVGKSSSMLQVR 210 Query: 198 EQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMS 257 + +EKVA +RA +LL G +G GK+ +A I EL + F++VNCA+L + S Sbjct: 211 QMMEKVA-PTRATVLLLGESGTGKTLIAGIIHELS---ERGKFPFIKVNCASLPENLLES 266 Query: 258 TLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSD 317 LFG+ KGAFTGA S+ G A+ G +FLDEIGE+ A QA LL+ ++E+ F G Sbjct: 267 ELFGYEKGAFTGAERSKPGRFEEAHRGTIFLDEIGEMPAGLQAKLLRFLQEREFERLGGV 326 Query: 318 RQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVE 377 + D ++IA T ++L + V EG+FREDLY R+N++ +P LR+R+EDI +++ ++ Sbjct: 327 KTHRVDVRVIAATNKELDKEVQEGRFREDLYYRLNVFPIWVPSLRERREDIPSLINHFLD 386 Query: 378 RHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVE 437 + A G + + + + + W GN RE+ + +++ + + L + Sbjct: 387 KMAREYGRRLVLSNSSLDYLVEYE------WPGNIREMENLMEKLSIMSEGQIVALKDLP 440 Query: 438 DEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDV 497 ++ + + + + A M+ + +++ ++ + + + + Sbjct: 441 SDMQQEKVCPGKVQEQARD----------HSLLDMEKKEILSALQRNSWIQSRAARELGL 490 Query: 498 SRQGKASVNDADRLRKYLAR 517 +++ L +Y++R Sbjct: 491 TQRQMGYRIKKFNLEEYVSR 510 >UniRef50_A1VV58 Sigma-54 factor, interaction domain-containing protein n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VV58_POLNA Length = 512 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 143/535 (26%), Positives = 224/535 (41%), Gaps = 31/535 (5%) Query: 1 MRKTV-AFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRLELLHDARSRS--LFE 57 M+KT ++G A G ++ L + D++ LL + +F Sbjct: 1 MKKTTWLVAWIGKTDHEAAEGLSSANQGPIAGALLGAQ--RFDKVYLLTNYPHARSVVFC 58 Query: 58 TLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTH 117 T P+ +V +I+L +P D+ +Y+ + ++ H++ GT Sbjct: 59 TWLEATTGYLPD-QVELYDIDLPSPIDYAAIYSAVCSNLLAARLPRDEVQLTFHLSPGTP 117 Query: 118 VAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEV--TIIDLDLSRYNAIASRFAEER 175 W +L++ R+ PARLIQ+S R E ++ + L R +A R + Sbjct: 118 AMAAIWIILSKTRF-PARLIQTSRERGIEPVDFEFDLASDFLPEFLERGSARIERLSASP 176 Query: 176 QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQAR 235 + I ++ IE +VA+ P+L+ G +G GK A+ + R Sbjct: 177 VGAVAQEFVAIVHQSTVMREQIELARRVAV-YDVPVLILGESGTGKELFAQALHAANPKR 235 Query: 236 HQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELG 295 FV VNC + + A S LFGH KGAFTGA +S +G A+GG LFLDEIG+L Sbjct: 236 KNAL--FVPVNCGAIPTELANSELFGHAKGAFTGAVKSHDGYFTQADGGTLFLDEIGDLP 293 Query: 296 ADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWT 355 D Q LL+ ++ K P GS D +++A T RDL VA G+FREDL+ R+ + Sbjct: 294 LDAQVRLLRVLQNKEVTPVGSGTARKVDVRIVAATHRDLAADVAVGRFREDLFHRLAVGI 353 Query: 356 FTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL---AFATSPQATWRGNF 412 LP LR+R+ D++ +D + D EA+ L A W GN Sbjct: 354 LRLPPLRERRGDLDVLIDLFLSAFNDDARDR----PEAQHKVLSESARKLLHTHEWPGNV 409 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRM 472 REL ++ R A ++ I VE I ++R + L + E L DR+ Sbjct: 410 RELQHTLLRAAIWSPGESIDTRDVESAIFQVRRISD----AVLNQPISQGIELQQLLDRV 465 Query: 473 QLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 ++ AA +L S + L + R G+ D Sbjct: 466 ARHYMERALEHTGHRKAAAAKLLGFS--------NHQTLLNWEKRLGVGKGESDD 512 >UniRef50_C6VTN7 Sigma 54 interacting domain protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VTN7_DYAFD Length = 479 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 121/508 (23%), Positives = 192/508 (37%), Gaps = 45/508 (8%) Query: 25 SKWRPTLCLCQQESLVIDRLE--LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNP 82 P L QE V+ L L +L + L + ++ T + L Sbjct: 5 EALSPNRQLTAQEMAVLTSLYRQLATAPSLLALQQILNDQLKALFHFTHCRISRLPLSAD 64 Query: 83 WDFEEVYACLHDFAR-GYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSP 141 A H+ + +L + ++ L + L ++ Sbjct: 65 AHVPAGEASEHEVLAIALHDESGTWGHLRFYSDREAISPAIPMALPDQVSSVVSLAIANI 124 Query: 142 PRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIE 201 ++ R E+ L NA + F I + R+ + + Sbjct: 125 VSTEKLSRQLEEIKHYQSQLEEQNAY-----LLEEAKEGFSYDDIIGSSGPMQRVFQLLS 179 Query: 202 KVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFG 261 +V+ + + +LL G TG GK +AR I + + V VNCA + S LFG Sbjct: 180 QVSF-TNSTVLLLGETGTGKELVARAIHNSSARKDRL---MVRVNCAAIPAHLIESELFG 235 Query: 262 HVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVS 321 H KG+FTGA E R G AN LFLDEIGE+ D QA LL+AI+E+ G + Sbjct: 236 HEKGSFTGAFERRIGKFELANQATLFLDEIGEMPLDMQAKLLRAIQEREIERIGGKGVIK 295 Query: 322 SDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHAS 381 D ++IA T R+L + V +G+FR DL+ R++++ TLP LR+R DI V R A Sbjct: 296 VDVRIIAATNRNLLEEVQQGRFRSDLFYRLHVFPITLPPLRERTGDISLLAKQFVGRFAK 355 Query: 382 LTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 G S+ R ++ +A LA+ W GN REL + R A I ++ Sbjct: 356 NNGKSISRISSNVMKALLAY------PWPGNVRELEHQMERCVLLARDHVIRDVLLPSPT 409 Query: 441 NRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS---AAGRQLFDV 497 A + + E++I + Q QL ++ Sbjct: 410 QSGHAP--------------AAGIYTKTHEENEREYIIRVLNQCNGKIYGPGGAAQLLNL 455 Query: 498 SRQGKASVNDADRLRKYLARFGLTWEAV 525 L + + G++ E + Sbjct: 456 ---------KVGTLNSKIKKLGISKEQI 474 >UniRef50_C8WYU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WYU9_DESRD Length = 489 Score = 480 bits (1235), Expect = e-134, Method: Composition-based stats. Identities = 109/473 (23%), Positives = 174/473 (36%), Gaps = 25/473 (5%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT 116 + V + ++ I + + + D Q T Sbjct: 16 HAEGDRLKEVLRQLLPGTITIMPLSTPHYRVLREQNPDLLLVALQQENPSGLRHLHRFHT 75 Query: 117 HVAQICWFLLAEA--RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS-RYNAIASRFAE 173 + R L + S P P EV ++ + R + ++ Sbjct: 76 EKENSLSIAIVPEGDRELTIEAMHSGAQAHIASPLHPEEVELVVSRVMPRTHLVSKSEIP 135 Query: 174 ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQ 233 + GI + + I+++ + + ILL G +G GK +A+ + Sbjct: 136 APKLRESDGFHGIVGNTTVMRELFDLIDRIGEEGESTILLQGESGVGKELVAQALHACSP 195 Query: 234 ARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGE 293 FV VNCA + S LFG+ KGAFTGA ++++G + ANGG LFLDEIGE Sbjct: 196 R---AGHNFVPVNCAAIPDSLLESELFGYEKGAFTGATQAKKGRFQHANGGTLFLDEIGE 252 Query: 294 LGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINL 353 + + QA LL+ ++EK F P G + V +D ++IA T +L V EG+FR DLY R+N+ Sbjct: 253 MRPELQAKLLRVLQEKEFEPVGGMKPVQADVRVIAATNINLELAVNEGRFRTDLYYRLNV 312 Query: 354 WTFTLPGLRQRQEDIEPNLDYEVERHAS-LTGDSVRFNTEARRAWLAFATSPQATWRGNF 412 +P LR R EDI LD RF+ A +A + W GN Sbjct: 313 VPLEIPPLRDRVEDIPLLLDKFTRLFNRGKQSQPKRFSANALKAL------QEYPWPGNV 366 Query: 413 RELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD-- 470 REL V R+ + + + +I AL A + D+ D Sbjct: 367 RELKNIVQRLCVLHRKAVVRVQDLPPQIVSDPELLHTPEEEEEEALSAAVQDLPDMPDME 426 Query: 471 ----------RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + ++ + ++ R +L K Sbjct: 427 EETDFNTRVSEFEDRLILQALIATNGNKKQAAEKLNLKRTTLLEKIKKKQLDK 479 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 479 bits (1234), Expect = e-134, Method: Composition-based stats. Identities = 108/500 (21%), Positives = 186/500 (37%), Gaps = 56/500 (11%) Query: 33 LCQQESLVIDRLELLHDARSRSLFETLKR--DIASVSPETEVVSVEIELHNPWDFEEVYA 90 L + + ++ ++ + + ++ V V ++ P Sbjct: 10 LLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVRMPG------- 62 Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG 150 + L + G + L +++ +P Sbjct: 63 ------------MDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFD 110 Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 E+ + ++ E RQQ G R+ + + K A + A Sbjct: 111 REEILFTVRKA----LLRAQGEEARQQVRPTG--GFIGRSRAMADVQAVLAKAAAGT-AT 163 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +LL G +G GK A+ + + R G FV+++CA L S LFG+ KGAFTGA Sbjct: 164 VLLRGESGTGKELAAKAVHDASPRRD---GPFVKLHCAALPDTLLESELFGYEKGAFTGA 220 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G + A+GG LFLDE+G++ Q LL+ I+E+ G + V D + +A T Sbjct: 221 ATRKPGRVELAHGGTLFLDEVGDISPAVQVKLLRVIQERELERLGGTQTVKVDVRFVAAT 280 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RF 389 + L + V EG+FREDL+ R+N+ +P LR+R +DIEP + +E HA G Sbjct: 281 HQPLEERVKEGRFREDLFYRLNVVPVWIPALRERPDDIEPLALHFLEVHAKTNGRPPFTL 340 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 T+ A A W GN R+L + R+ + + I V E+ R Sbjct: 341 MTDGLAALRA------QPWPGNVRQLQNFLERLVVLSDTQVIGGREVLQELARQPGLAPA 394 Query: 450 S---------RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQ 500 + + + M+ + + ++A +L +SR+ Sbjct: 395 PFAATPSVSALEAPTVPVTDSARTLESQRKEMERQAMADALKRAGDNRTLAARLLGISRR 454 Query: 501 GKASVNDADRLRKYLARFGL 520 L L +GL Sbjct: 455 ---------TLYNKLEEYGL 465 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 113/481 (23%), Positives = 190/481 (39%), Gaps = 41/481 (8%) Query: 47 LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKE 106 L R + + E+++ I V EV V NP V+ F+ + Sbjct: 113 LMQERLQMILESVQDGICVVDRSGEVTYV-----NPSYLRIVHKTPEMVVGQNVFETAAD 167 Query: 107 D-YLIHITTGTHVAQICWFLLAEARYL---PARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + +G + + + E+ + LS Sbjct: 168 GNRCAVLRSGIARIGSIRHKKDGTTIVANVNPIFVDGEIAGVVSVIKDITEIQTLMERLS 227 Query: 163 RYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAG 220 + +A A +E R + + ++ ++ K A S A +L+ G +G G Sbjct: 228 QVSAKAEYLEQELLRTKKTAQAFANYIGKSGKVVDVLALASK-AADSSANVLIRGESGTG 286 Query: 221 KSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRS 280 K +A I R G F+ VNC + G S LFGH KGAFTGA + G Sbjct: 287 KEVIAEGIHYASGRRR---GPFIRVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFEL 343 Query: 281 ANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAE 340 AN G +FLDEIGEL + Q LL+ +++K F G + + D ++IA T RDL +V E Sbjct: 344 ANHGTIFLDEIGELDKNLQVKLLRVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVRE 403 Query: 341 GKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLA 399 G FR+DLY R+N+ LP LR R +DI +++ +E+ + VR +A + ++ Sbjct: 404 GTFRDDLYYRLNVIPIILPPLRDRPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMH 463 Query: 400 FATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALL 459 + W GN REL + R+ T + IT ++ I + + Sbjct: 464 Y------RWPGNVRELENVIERVITLMDTDLITAAMLPSYIKGDIAGRE---------VQ 508 Query: 460 GAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFG 519 + + ++ + + + RQ + +L +S + ++G Sbjct: 509 SLADDTVLPWEEYEKQIIANALRQ-GTSFNGAAKLLRIS---------HKTVAAKARKYG 558 Query: 520 L 520 L Sbjct: 559 L 559 >UniRef50_B8FL05 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FL05_DESAA Length = 453 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 98/435 (22%), Positives = 178/435 (40%), Gaps = 36/435 (8%) Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPA--RLIQSSPPRKKEQP 148 D + + ++ + ++ +P Sbjct: 50 SYFDIIFLDVRMQGMGGMEVLGWIKDNNISSLVVMITGVTEPDIIIQAMKMGAFDYLAKP 109 Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMIEQIEKVAIK 206 G ++ I + +A ++ + + +P + ++ KVA Sbjct: 110 FGVDDIENIIQRAEKASAPPAQTIGIPKSKGLQAGPDRIMLGSSPVMQNLFSRMLKVA-P 168 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 + +L+ G +G GK +AR I + R FV V+C+ L + S LFGHVKG+ Sbjct: 169 TDGTVLITGESGTGKELVARAIHYHSRRRENE---FVPVDCSALVENLLESELFGHVKGS 225 Query: 267 FTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 FTGA +S++GL AN G F DEI L D QA LL+ I+E+ F G ++ D ++ Sbjct: 226 FTGALQSKKGLFELANHGTFFFDEISNLSMDIQAKLLRVIQEREFTQVGGAVRIKVDLRI 285 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 + + RDLR +AE KFREDL+ R+++ LP LR+R +DIE ++Y V + G Sbjct: 286 MVASNRDLRAAIAENKFREDLFYRLHVIPIHLPPLRERGKDIEELVNYFVLHMSRKIGRE 345 Query: 387 -VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 + + EA L++A W GN REL ++ R I + + +I + Sbjct: 346 APKVSREAMDVLLSYA------WPGNVRELENTIERTLILKDDAVIKPEHLPQDIRQQP- 398 Query: 446 NWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASV 505 L + ++ + ++ +++ + + + ++R+ Sbjct: 399 -----------PDLRSFSDKMVSLKDLERDYIRFVLSRTNGGIQKAAGILGINRK----- 442 Query: 506 NDADRLRKYLARFGL 520 L + ++GL Sbjct: 443 ----TLSMKMKKYGL 453 >UniRef50_D1TMK5 Transcriptional regulator NifA n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TMK5_9BURK Length = 548 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 130/537 (24%), Positives = 195/537 (36%), Gaps = 60/537 (11%) Query: 21 SQRWSKWRPTLCLCQQESLVIDRLE---LLHDARSRSLFETLKRDIASVSPETEVVSVEI 77 R WR +Q + L L R F + + + + V V Sbjct: 40 LSRARGWRSAFIAVEQPDGKLGGLCSTGLSDGWREGMRFPSGEGIVGRIQESESAVVVPE 99 Query: 78 ELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLI 137 +P + D G E + H + L+A + + Sbjct: 100 LDGDP---------MFDDRTGAVRVSNAERVALLGAPIRHEGRPLGVLVALCENPDGKRV 150 Query: 138 QSSPPRKKEQPRGP-GEVTIIDLDLSRYNAIASRFAEERQQTLD--FLKSGIATRNPHFN 194 + + E P ++D + R+ + R+ Sbjct: 151 FADDLQLLEVVASPIARALLLDREADPSRKSVQEEISRRRNAAAPIYQVDWAIGRSASMQ 210 Query: 195 RMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDT 254 + Q+ +VA +R +LL G +G GK +AR I L + Q FV VNCA L Sbjct: 211 HVFAQVHQVA-PARTTVLLRGESGTGKELIARAIYRLSPRKDQ---PFVSVNCAALTETL 266 Query: 255 AMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPF 314 S LFGH KGAFTGA+ R+G A+GG LFLDEIG++ QA LL+ ++E+ F Sbjct: 267 LESELFGHEKGAFTGAQTQRKGRFELAHGGTLFLDEIGDISPSFQAKLLRVLQEREFERV 326 Query: 315 GSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDY 374 G V D +LI T R+L Q+V EG+FR DLY RIN+ + LP LR+R+EDI Y Sbjct: 327 GGTTPVRVDVRLIVATNRNLEQMVREGEFRADLYYRINVVSIVLPPLRERREDIPEMAQY 386 Query: 375 EVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRIT-- 432 + R G ++ FN EA R W GN REL + R AT A I Sbjct: 387 FLNRFNRENGRALHFNEEALRVL------SSCYWPGNVRELENCIERTATMAHHDTIGRS 440 Query: 433 -------------LDVVEDEINRLRYNW-----------QESRPSALTALLGAEAENIDL 468 L +E E + G + + Sbjct: 441 SFLCEIDQCLTKVLHHLEREDAVRPARPSDVTVSNALNVPAKFGAPERDAGGLGMHSGEH 500 Query: 469 FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAV 525 + E ++ + + A +L ++ + L + G+ Sbjct: 501 IPEDERERLLWAMERCGWVQAKAARLLGITARQIGYA---------LRKHGIKLRRF 548 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 117/491 (23%), Positives = 197/491 (40%), Gaps = 36/491 (7%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L S+ ++L+ + V + EE+ D + P Sbjct: 4 KILVVDDEISILQSLRGVLQDEGYRIGVAA-----SGEEALEELRRDTPDLMLLDIWMPG 58 Query: 105 KEDYLIHITTGTHVA--QICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + A + + + E+P + + + Sbjct: 59 MDGLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLSLERILVSIKNAL 118 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 ++ + RQ+ S + R+ + EQI + A + A +L+ G G GK Sbjct: 119 DFHRLEEENLLWRQKAHRT--SHMTGRSEAVESLREQIRR-AAPTNATVLITGENGTGKE 175 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR I +L + H+ VEVNCA + D S LFGH KGAFTGA E R G AN Sbjct: 176 LAARMIHQLSKRSHR---PMVEVNCAAIPEDLIESELFGHEKGAFTGAHERRRGRFDVAN 232 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG LFLDEIG++ QA +L+ ++E+ F G R + D +++A T +D+++ + G+ Sbjct: 233 GGTLFLDEIGDMSLRTQAKILRILQEQVFERVGGSRTIQVDVRVVAATNKDIQREIEAGR 292 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFAT 402 FR+DLY R+N+ +P LR R +DI ++ ++ A+ + + A F Sbjct: 293 FRQDLYYRLNVIPIFVPPLRDRLQDIPLLVEDFLDDMAAESAMGRKEIDPAV-----FGP 347 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVE-DEINRLRYNWQESRPSALTALLGA 461 Q +W GN REL + RM RI + D +NRL +E+ P L A Sbjct: 348 LQQYSWPGNIRELRNFIERMVIMTPGQRIGPRDLPLDFLNRLPKPPEEAGPYQCATLREA 407 Query: 462 EAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL- 520 + + +++ + + + R L + + G+ Sbjct: 408 RSV-------FERAYLLRKLDEFAWNVSLTAAQVGLERS---------HLHRKMKALGIR 451 Query: 521 TWEAVQDQHSS 531 E D H S Sbjct: 452 EREETLDAHES 462 >UniRef50_B3QW87 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW87_CHLT3 Length = 497 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 99/510 (19%), Positives = 187/510 (36%), Gaps = 54/510 (10%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L + + +K ++ EV + + D P+ Sbjct: 4 ILVVDDEPVVTDYIKEALSEEGYAVEVAYTGND-----GIVQAKKVSPDVIILDFMLPDL 58 Query: 106 EDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 + + Q+ + +++ +P I + Sbjct: 59 NGIEVLKKLRQLDESLQVIMLTAYNSVPTALEAVRNGAADYILKPFDLDAFKITVAKICE 118 Query: 164 YNAIASRFAEERQQTLDFLKSG--IATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 + ++ R+ L + + ++ + + +VA + +L+ G +GAGK Sbjct: 119 KAHLTNQLRFLREDNAKKLAGNEFLLCPSVQMAKVYDLVFQVAQTNDTTVLILGESGAGK 178 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +A+ I + + FVE+NCA + + S LFGH GAFT AR + GL A Sbjct: 179 EHIAKLIHQNSSR---AAKPFVEMNCAAIPENLLESELFGHEPGAFTDARSKKLGLFEYA 235 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 +GG +FLDEIG++ QA +LK +E K F G R + SD +++A T +DL + G Sbjct: 236 DGGTIFLDEIGDMPLATQAKILKVLETKEFRRVGGLRDIKSDVRVVAATNKDLSFEIDRG 295 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFA 401 FREDLY R+ + +P LR+R+EDI ++ +E + + +A A L++ Sbjct: 296 NFREDLYYRLQVVPIDIPPLRERKEDILHLANFFLEMTGRSMRKRLELSGDAASALLSY- 354 Query: 402 TSPQATWRGNFRELSASVTRMATFAT-SGRITLDVV---EDEINRLRYNWQESRPSALT- 456 TW+GN REL + R RI + + + L +E Sbjct: 355 -----TWKGNVRELKNVIERAVIVTPNGSRILPEHLAFKPMSVAELAKKSEEFLIPKPDY 409 Query: 457 ----------------------ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 + ++++ ++++ + +L Sbjct: 410 EARQAEQQRQAEQRSNGLSFSLSKFYDGFSLKAHLEQIERQYLLDALEKTGGNQLQAAKL 469 Query: 495 FDVSRQGKASVNDADRLRKYLARFGLTWEA 524 + R LR + ++ + Sbjct: 470 LGIERHV---------LRYQMKKYEIDDPR 490 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 98/449 (21%), Positives = 177/449 (39%), Gaps = 47/449 (10%) Query: 101 FQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLD 160 F+ + + + + A ++S + +I + Sbjct: 277 FKHDPHNVSLLCAPILSEQTTLGVVNAFIVQNKHTDLKSF-LDFLQVVASIISQSIKIQN 335 Query: 161 LSRYNAI---ASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 L +R+ + + + +M E+I+ VA SRA +L+ G + Sbjct: 336 LVEEAKKEISRENIQLKRELKNKYKFGSLIGKAASMEKMFEKIQLVA-DSRASVLITGES 394 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +A I FV++NCA + + S LFGH KG+FTGA ++G Sbjct: 395 GTGKEMIANAIHYNSSRSE---NPFVKINCAAIPENLLESELFGHKKGSFTGAVTDKKGK 451 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 A+ G +FLDEIGE+ + Q+ LL+ ++E+ GS + D ++IA T +L QL Sbjct: 452 FELADTGTIFLDEIGEMDLNLQSKLLRVLQEREIEAIGSTKAKKVDVRIIAATNAELEQL 511 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRA 396 VAE KFR DL+ R+N+ P LR R EDI +++ +E++ S++ + EA R Sbjct: 512 VAEKKFRADLFYRLNVVKINTPPLRDRVEDIPLLMNHFLEKYTKDNNKSIKGISREASRL 571 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY----------- 445 L + W GN REL + R A + + D ++ + Sbjct: 572 LLKY------RWPGNVRELENVIERAVVLAQDEILNEEDFSDILSNMEEMPDNTVEVSHS 625 Query: 446 ------NWQESRPSALTALLGAEAENID------LFDRMQLEHVIAICRQAKSLSAAGRQ 493 + E L + + +D + ++ + ++ + + Sbjct: 626 NHVESVSGAEPLDLGSGRLTSGQLDGLDGRAMEIVVSEVESRLIQYAMKKFRYTKTRVAK 685 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLTW 522 ++R + L K + + + Sbjct: 686 FLGINR---------NTLDKKIKELNIEY 705 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 111/507 (21%), Positives = 183/507 (36%), Gaps = 56/507 (11%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L +++ L ++ + + + E + D PE Sbjct: 4 KILVVDDEQNMRIALYEALSRSGHQVTLAE-----NGRLALELIEQQPPDLVVTDIRMPE 58 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + + I + ++ +P + + Sbjct: 59 MDGIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPFPVEVIDETVRKVF 118 Query: 163 RYNAIASRFAEE------RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 + + E + + R+ HF R++E+ VA S+A +L+ G Sbjct: 119 KQRQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERARAVAS-SKATVLVLGE 177 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK AR I + + +G FV +NCA L S LFGH KGAFTGA S++G Sbjct: 178 SGTGKEVFARFIHHVS---DRKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMSKKG 234 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG L LDEIGE+ QA LL+ ++E+ G V D ++A T RDL Sbjct: 235 KFEQAHGGTLLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGKEPVKVDVHVLATTNRDLGA 294 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRA 396 V EG FREDL+ R+N+ LP +R+R EDI D+ +E++ + + + A R Sbjct: 295 AVREGNFREDLFYRLNVIPIRLPAMRERPEDISLLADHFIEKYTARYQKPAKKLSAASR- 353 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVV-EDEINRLRYNWQESRPSAL 455 + W GN REL V R + + EDE+ + P Sbjct: 354 ----QRFLEYQWPGNVRELENLVERAVLLSAGPELEPWDFWEDELPPAGAVTGATDPELA 409 Query: 456 TALLGAEAENIDL------------------------FDRMQLEHVIAICRQAKSLSAAG 491 + DL ++ + ++ RQ Sbjct: 410 GSANPEPVAAADLALAGSNTDAAASAAEIAIDPSRHSLWDVERQMILRALRQTSDNRTHA 469 Query: 492 RQLFDVSRQGKASVNDADRLRKYLARF 518 ++ +S LR L + Sbjct: 470 AKMLGIS---------VRTLRNKLNEY 487 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 105/439 (23%), Positives = 178/439 (40%), Gaps = 51/439 (11%) Query: 96 ARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVT 155 + +F+ + + V F+ E R I+ + Q Sbjct: 77 LKRMQFRTFSDHFRKRSGEKFPVEVEENFIRFEGREYSCSFIKDMTQHFQTQ-------E 129 Query: 156 IIDLDLSRYNAIASRFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 + L + +R E + L I T NP F + ++ +E+VA + A Sbjct: 130 ALRRALDEVQTLKNRLEAENVYLMNEIKLSNNFDEIVTGNPIFMKALQLVEQVA-PTDAS 188 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 +L+ G TG GK +AR I L R + + +NCA L + LFGH +GAFTGA Sbjct: 189 VLILGETGVGKELIARAIHNLSNRRDR---PLIRLNCAALPATLMENELFGHERGAFTGA 245 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G A+GG LFLDE+G+L + Q+ LL+ ++E F G + D +++A T Sbjct: 246 NCRKPGRFDLADGGTLFLDEVGDLPMELQSKLLRVLQEGEFERLGGAETIKVDVRILAAT 305 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFN 390 DL+ L+AEG+FR DLY R+N++ P LR+R+EDI + + V+ G S+ Sbjct: 306 HVDLKALLAEGRFRSDLYYRLNVFPIQCPPLRERREDIPLLVRHFVKASCEKNGKSIELI 365 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES 450 + W GN REL + R + ++ +D + + Sbjct: 366 PR-----HVMESLEGYPWPGNIRELQNVIERAVIISRGNKLEIDSLPKMV---------- 410 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS---AAGRQLFDVSRQGKASVND 507 + A+A I + + EH+I ++ + R Sbjct: 411 --------IAADAAPISPLEVTEREHIIRALETTAWRVGGPKGAAEILGLKR-------- 454 Query: 508 ADRLRKYLARFGLTWEAVQ 526 L+ + + G+ + + Sbjct: 455 -TTLQARMRKLGINRQGLP 472 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 164/374 (43%), Gaps = 23/374 (6%) Query: 150 GPGEVTIIDLDLSRYNAIASRFAEE--RQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKS 207 ++ L + R +E + + + ++P R I+ KV Sbjct: 199 DVTNQVALNEKLFNMSHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKV-CSV 257 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 ++ +L+ G +G GK A+ I E + F+ +NC + S LFG+ +GAF Sbjct: 258 KSTVLILGESGVGKEVFAKAIHEAS---ETANAPFISINCGAIPEALFESELFGYERGAF 314 Query: 268 TGAR-ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQL 326 +GA + ++G + A GG LFLDEIGE+ D Q LL+ ++E+ +Y G +++++ DF++ Sbjct: 315 SGANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRI 374 Query: 327 IAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS 386 IA T RDL++ + +G FREDLY R+N+ + +P LR+R+EDI + + Sbjct: 375 IAATNRDLQEEMRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRP 434 Query: 387 VRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 +R + W GN REL V R+ FAT G I + + N N Sbjct: 435 IRDLPSSI-----MHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTNDTLEN 489 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 E+ S L + + D + + + R + V+R Sbjct: 490 --ETSHSLLLSNNNTILSLQEEMDEHEKKIIERALRILDGNKLECAKQLGVTRA------ 541 Query: 507 DADRLRKYLARFGL 520 L L R GL Sbjct: 542 ---TLYNRLKRLGL 552 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 107/515 (20%), Positives = 173/515 (33%), Gaps = 63/515 (12%) Query: 31 LCLCQQESLVIDRLEL-LHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVY 89 + + E++ D L L L + + + + V +L Sbjct: 39 ILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQ------G 92 Query: 90 ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPR 149 D R + ++ + + +P Sbjct: 93 MDGLDLLRAVRMRH-------------PDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPY 139 Query: 150 GPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS-GIATRNPHFNRMIEQIEKVAIKSR 208 E + + A R+Q + + P + I +VA S Sbjct: 140 DLNEARALVQKALEKRRLRQEVARLREQLRERSLPVPLLGSAPCMQALKRTIAQVA-PSD 198 Query: 209 APILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFT 268 +L+ G TG GK AR + + F+ +NC + S LFGH +GAF+ Sbjct: 199 VTVLILGETGTGKELAARMVHLFSRRSEAR---FLAINCGAFNEELLESELFGHEQGAFS 255 Query: 269 GARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIA 328 GA R+GL +A GG LFLDE+GE+ Q LL+A++E+T G + D +L+A Sbjct: 256 GAVRQRKGLFEAAEGGTLFLDEVGEMSLPMQVKLLRAVQERTIRRVGGTADIPVDVRLLA 315 Query: 329 GTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR 388 T +DL A G+FR DLY R+N+ +P L +R ED+ Y E+ A TG Sbjct: 316 ATNKDLAAEAAAGRFRHDLYYRLNVVVLRMPPLAERMEDVPLLAQYFAEKAARDTGRPAP 375 Query: 389 -FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR--- 444 E + + GN REL + R A IT + ++ L Sbjct: 376 HIAPETLGVL------ARYPFPGNVRELHNIIERAAVLCAGDVITPADLPPDLRALAGIA 429 Query: 445 -------------------YNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAK 485 + +R D + H+ + A Sbjct: 430 GGAGGNGGKGGAAGPALVLRADEAARMPGGAGEGMTPDGRPMTLDENERAHIEWVLELAG 489 Query: 486 SLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 ++ D+ R L + L R+GL Sbjct: 490 GNRTHAAKVLDIDRA---------SLWRKLKRYGL 515 >UniRef50_Q1D217 Sigma-54 dependent DNA-binding reponse regulator CrdA n=7 Tax=Cystobacterineae RepID=Q1D217_MYXXD Length = 498 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 176/479 (36%), Gaps = 61/479 (12%) Query: 88 VYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKK 145 V A D P+ + +T + + Q Sbjct: 42 VSARPVDAVLMDVKMPDMDGLTALAKLTELKPELPVIMMSGHGTIDTAVKATQLGARDFL 101 Query: 146 EQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 E+P + + ++ ++ A + E R Q + + P R+ I++ A Sbjct: 102 EKPIARERLLVALRNVLKHQAAMAELQELRAQLGRY---DMVGSGPAMQRIFSLIQRTA- 157 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 S +L+ G G GK +AR + + + + Q FV++NCA + + S LFGH KG Sbjct: 158 PSEGRVLITGENGTGKELIARALHQHSKRKGQ---PFVKLNCAAVPHELIESELFGHEKG 214 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA R G A+ G LFLDEIG++ QA LL+ ++E G D + Sbjct: 215 AFTGAVSVRRGKFELAHEGTLFLDEIGDMPQAMQAKLLRVLQEGELERVGGAETHKVDVR 274 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTG- 384 ++A T ++L +A G+FREDLY RIN+ P LR+R+ED+ + ++ + G Sbjct: 275 VVAATNKNLEAEIAAGRFREDLYYRINVVQIHSPPLRERREDLPDLIKTFLDEACAKNGR 334 Query: 385 DSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLR 444 + + +A A+ + GN REL V R+A +T + + R R Sbjct: 335 RPLTLSPDALAVMSAY------DYPGNVRELRNLVERLAILCEGPIVTRTDALELLPRGR 388 Query: 445 YNWQES------------------------------------RPSALTALLGAEAENIDL 468 + P+ + A+ + Sbjct: 389 NVPPPAPVETPASPLPPPSPEAAVVLASSTPAPAIAAPVATEPPAPVGFRPRADRTFREQ 448 Query: 469 FDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQD 527 + + E + + +L D+ R K + GL + + Sbjct: 449 VEDAEREIIQHVLSHTHDNVTEAARLLDLER---------GHFYKKMKALGLRRGSSES 498 >UniRef50_B8JEK1 Sensor protein n=14 Tax=cellular organisms RepID=B8JEK1_ANAD2 Length = 1079 Score = 476 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 100/469 (21%), Positives = 172/469 (36%), Gaps = 24/469 (5%) Query: 61 RDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT--HV 118 R +A + E V + + P+ + + Sbjct: 632 RKVARANLTLEGFEVLVASSGAEALARLAESDPLAMVSDLKMPDLDGIALMERVHALRPS 691 Query: 119 AQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL-DLSRYNAIASRFAEERQQ 177 + ++ +P E+ ++ ++ A + Sbjct: 692 LPVVLVTAHATVETAVEAMRKGALHYLTKPLRFDELALVLRHAVAHERARRDVLRLRGEL 751 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 I P + +E+VA + A +LL G TG GK +AR I R + Sbjct: 752 ERAAGFEEIVGTAPAMREVFAMVEQVA-PADATVLLRGETGTGKELVARAIHRRSPRRDR 810 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 FV VNC + D S FGH KGAFTGA R G A+G LFLDE+G+L Sbjct: 811 ---PFVAVNCTAIPKDLMESEFFGHEKGAFTGAVARRVGRFEQADGSTLFLDEVGDLDLA 867 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 QA LL+ ++E+ G+ + D +++A T RDL LV EG+FR+DL+ R+N+ Sbjct: 868 IQAKLLRVLQEQEITRVGARDPLKVDVRIVAATNRDLEALVHEGRFRDDLFYRLNVIPLR 927 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 LP LR+R +D+ L++ + A G + A + W GN REL Sbjct: 928 LPPLRERPQDLPALLEHFLRSFAQRYGRTSPVPPPDL-----LAAARAYPWPGNVRELRN 982 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHV 477 R G + + + + L L +R + E++ Sbjct: 983 LCERAVLM---GWAAVAPIFGAGAGVTPRPDAGAGVPVDTSLPLLEARQRLVERFEREYL 1039 Query: 478 IAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 + ++ + + ++ + L + + +GL+ + + Sbjct: 1040 TRLLKERRGRIGEVARAAGIAERN---------LYEKMKAYGLSRDDYR 1079 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 102/482 (21%), Positives = 182/482 (37%), Gaps = 32/482 (6%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 +L S+ L + S E S +E ++ + P Sbjct: 7 RILVVDDDTSMRMALCETLESCGYCIETASNGLEA-----LKKFRKGAFEAVITDMRMPG 61 Query: 105 KEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 + T + + + ++ +P ++ + ++ Sbjct: 62 MGGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVM 121 Query: 163 RYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKS 222 + + + F I T + ++E ++ VA +S++ +L+ G +G GK Sbjct: 122 ATYEEKEFRESKPVEKMTFTDREIITEDEKILGILEFLKTVA-QSKSSVLIQGESGTGKE 180 Query: 223 FLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSAN 282 AR + RH FV +NCA + + S +FG KGAFTGA + + G AN Sbjct: 181 LFARYLYLHSSRRH---MPFVAINCAAIPDNLLESEMFGFEKGAFTGAIQRKVGKFELAN 237 Query: 283 GGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGK 342 GG L LDE+ E+ QA LL+ I+EK G + D ++IA T D+R+ + E Sbjct: 238 GGTLLLDEVTEMTPHLQAKLLRVIQEKEIDRLGGKMPLPVDVRIIATTNADVRKCIEEKT 297 Query: 343 FREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFA 401 FREDLY R+N+ +P LR+R+ D+E Y ++++++L + F + A+ Sbjct: 298 FREDLYYRLNVIPLKIPPLRERKGDVELLGSYFLKKYSNLNEKPLPVFANGTLKRLNAY- 356 Query: 402 TSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE-----SRPSALT 456 W GN REL + R + + + E E S T Sbjct: 357 -----DWPGNVRELENVIERAVLVCGGNVVLPEHLYLEDQGSVSPAAEEKTSCSLEEVST 411 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLA 516 + G + M+ E + + + K ++ +S +R L Sbjct: 412 DISGIDLSRGMTIWEMEKELIFSTLDKVKGNKTRASEILGIS---------VRTMRNKLQ 462 Query: 517 RF 518 + Sbjct: 463 EY 464 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 102/456 (22%), Positives = 193/456 (42%), Gaps = 41/456 (8%) Query: 77 IELHNPWDFEEVY-ACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPAR 135 +++ E++Y D + EK T + + + + + Sbjct: 142 LKVRISSSAEKIYGLKPEDLIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRK 201 Query: 136 LIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKS----------- 184 L+ + ++ + I D++ + + + ++ + + Sbjct: 202 LL-VTATPFFDKDNNIKRIVSISKDITDEEKLKTELKQTKELLQKYEEELSSLRIAHLKN 260 Query: 185 -GIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFV 243 I R+ R+IE + KVA + + IL+ G TG GK LA+ I + + G F+ Sbjct: 261 SEIIYRSKQMERLIELVNKVA-PTESTILIYGETGVGKEVLAKYIHNIS----RSEGPFI 315 Query: 244 EVNCATLRGDTAMSTLFGHVKGAFTGAR-ESREGLLRSANGGMLFLDEIGELGADEQAML 302 ++NC + + + LFG+ KGAFTGA+ E + GL+ A+ G L LDEI EL Q L Sbjct: 316 KINCGAIPENLLEAELFGYEKGAFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKL 375 Query: 303 LKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLR 362 L+ ++EK F G + + D ++IA + +DL++LV EGKFR+DLY R+N+ T+P LR Sbjct: 376 LRVLQEKEFIRVGGIKPIKVDVRIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLR 435 Query: 363 QRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRM 422 +R +DI + + + G S + E ++ + W GN REL + R+ Sbjct: 436 ERVQDIPILAYHFLNMYNEKYGHSKQLTNEVMEIFMKY------PWPGNVRELENVIERI 489 Query: 423 ATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICR 482 + + +IT + E+ QE + + + ++ + + Sbjct: 490 VIISENDQITKKDLPGELLN-----QEETNHSFGVHVSRLMPLKEASALVEYQLIKQAIE 544 Query: 483 QAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 + S ++ V + + + L ++ Sbjct: 545 ECGSS-YKAAEVLGVDQS---------TIIRKLKKY 570 >UniRef50_B9M1N5 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Geobacter RepID=B9M1N5_GEOSF Length = 483 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 105/501 (20%), Positives = 183/501 (36%), Gaps = 50/501 (9%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 +L +L D + + +V E+ + +E + + + + A Sbjct: 3 AKLLILDDDPD------ILLMLKTVFHGEEMEVM-LESESDAALKLILTERPNVAIFDIS 55 Query: 102 QPEKEDYLIHITTG--THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 P K + + I + ++ +P ++ Sbjct: 56 MPGKSGFQVLQEAKKIDPGLSIIMTTGHKTTQNAIEAMKFGAYDYVTKPFDTNKLRSSVQ 115 Query: 160 DLSRYNAIASRFAEERQ----QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNG 215 N + + + + + + + + + + KVA S A +L+ G Sbjct: 116 KALECNLLNRKVRYTKDTNQLKLEEDADDIMIGSSAEMIEIWKMVGKVA-DSDATVLIQG 174 Query: 216 PTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESRE 275 +G GK LAR I + + +++ F+ VNCA L S LFGH KGAFT A R Sbjct: 175 ESGTGKELLARAIYDNSRRKNR---PFLAVNCAALPEALLESELFGHEKGAFTDAHARRI 231 Query: 276 GLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLR 335 G NGG +FLDEIGE+ Q LL+ +E + F G + + D ++IA T R L Sbjct: 232 GKFEQCNGGTIFLDEIGEMSLANQGKLLRVLECQEFERVGGNDTIRVDVRIIAATNRSLV 291 Query: 336 QLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEAR 394 V E FR DL+ R+ + F LP L+ R EDI +D V++ + G ++R E Sbjct: 292 TSVKEKTFRMDLFYRLRVVNFFLPPLKDRAEDIPLLIDLFVKKFSRKYGKTIRRVAPETT 351 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA 454 L + W GN REL + F S + + +E + + A Sbjct: 352 DLLL------KHPWEGNIRELKNVINSATVFCKSDVLMPEDLESFLTAKAGFKEVDLDCA 405 Query: 455 LTALLGAEAENIDLFDR-----------------MQLEHVIAICRQAKSLSAAGRQLFDV 497 + ++ ++ + ++ + +L + Sbjct: 406 GDDYYEVFWKMLEPVFDGICLKNKGTIYESVNMGLEKALIHMAMEKSNNNQVFAAKLLGI 465 Query: 498 SRQGKASVNDADRLRKYLARF 518 SR + LR L R+ Sbjct: 466 SR---------NTLRDRLERY 477 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 157/388 (40%), Gaps = 26/388 (6%) Query: 130 RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQ--QTLDFLKSGIA 187 P + R R ++ + L++ ++ E + L I Sbjct: 110 TGNPVFDKRGGIFRVVTNVRDVTDLNRLQNQLTKTQEETLKYQTELNHLRALHIKDPDII 169 Query: 188 TRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNC 247 R+ ++E KVA + +L+ G +G GK A+ I + ++ F+++NC Sbjct: 170 FRSRAIAAVVELATKVA-DVDSTVLITGESGTGKELFAKLIHRHGRGDNR---PFIKINC 225 Query: 248 ATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAI 306 + S LFG+ GAFTGA+ + GL A+GG LFLDEIGE+ Q LL+ I Sbjct: 226 GAIPETLLESELFGYDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVI 285 Query: 307 EEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQE 366 +EK G +Q S + ++IA T RDL +V +G FREDLY R+ + +P LR+R+E Sbjct: 286 QEKAVIRVGGVKQKSVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKE 345 Query: 367 DIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFA 426 DI + + +++ G + + + +W GN R+L + R+ Sbjct: 346 DIPLLVKHFLDKFNKKFGFNKVILPDVIDRL------TEYSWPGNVRQLENIIERLVVTT 399 Query: 427 TSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKS 486 IT D++ ++N A L + + + + RQ Sbjct: 400 PGNEITADMLPQQVN------------ARIPLPKTGTKLKEAVAATEKYLLTETFRQY-G 446 Query: 487 LSAAGRQLFDVSRQGKASVNDADRLRKY 514 + + R L Sbjct: 447 NWNKVADVLGIDRTTACRKAVKYGLISK 474 >UniRef50_P19323 Formate hydrogenlyase transcriptional activator n=72 Tax=Enterobacteriaceae RepID=FHLA_ECOLI Length = 692 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 104/423 (24%), Positives = 172/423 (40%), Gaps = 41/423 (9%) Query: 109 LIHITTGTHVAQICWFLLAEA---RYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYN 165 L+ + +G + + E L++ R I L Sbjct: 302 LLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEI-HRLKERL 360 Query: 166 AIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLA 225 + E+ +D I R+ +++Q+E VA +S + +L+ G TG GK +A Sbjct: 361 VDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIA 419 Query: 226 RRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGM 285 R I L ++ V++NCA + S LFGH +GAFTGA R G A+ Sbjct: 420 RAIHNLSGRNNRR---MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSS 476 Query: 286 LFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 LFLDE+G++ + Q LL+ ++E+ F GS++ + +D +LIA T RDL+++VA+ +FR Sbjct: 477 LFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRS 536 Query: 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSP 404 DLY R+N++ LP LR+R EDI + A G ++ E R Sbjct: 537 DLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNME--- 593 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAE 464 W GN REL + R + L + D + + AL Sbjct: 594 ---WPGNVRELENVIERAVLLTRGNVLQLS-LPDIVLPEPETPPAATVVALEG------- 642 Query: 465 NIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 + + ++ + ++ + A Q + R L + R G+ Sbjct: 643 ------EDEYQLIVRVLKETNGVVAGPKGAAQRLGLKR---------TTLLSRMKRLGID 687 Query: 522 WEA 524 A Sbjct: 688 KSA 690 >UniRef50_Q3J8M6 Sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Gammaproteobacteria RepID=Q3J8M6_NITOC Length = 479 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 106/400 (26%), Positives = 167/400 (41%), Gaps = 32/400 (8%) Query: 140 SPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 + P E+T + + + ++R+ L + + + Sbjct: 100 GALGRLRYPFSQTELTSALQNAELFREGHQQKGQDRRSVE--LFRSLVGNSRATRTVRHL 157 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 IE+VA S A +L+ G +G GK +AR + R FV VNC + G+ S L Sbjct: 158 IEQVA-DSNATVLILGESGTGKEVVARNLHYHSSRR---GNPFVPVNCGAIPGELLESEL 213 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KGAFTGA +R+G A G LFLDEIG++ Q LL+ ++E+TF GS++ Sbjct: 214 FGHEKGAFTGAITARQGRFELAQKGTLFLDEIGDMPMAMQVKLLRVLQERTFERVGSNKL 273 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T R+L + + EG FREDLY R+N++ +P LR+R EDI ++ + R Sbjct: 274 IHVDVRIIAATHRNLEEQLQEGNFREDLYYRLNVFPIEMPPLRERVEDIPLLINEIITRI 333 Query: 380 ASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 G SVR A A Q W GN REL+ V R+ G + + ++ Sbjct: 334 EHEKGASVRLTPAAVMALC------QYPWPGNVRELANLVERLTILHPYGVVDHYDLPEK 387 Query: 440 INRLRYNWQESRPSAL-----------TALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 S P L + ++ + +A + Sbjct: 388 YRIEGEGISPSAPELASLERVVDTLETPRLPREGLDLKKHLSCIERSLIKQALEEADGVV 447 Query: 489 AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 A + R L + L ++ + E V + Sbjct: 448 AQAAHRLRMRR---------TTLVEKLRKYDIQREDVAPR 478 >UniRef50_A1ATN1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A1ATN1_PELPD Length = 461 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 109/415 (26%), Positives = 173/415 (41%), Gaps = 14/415 (3%) Query: 94 DFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP 151 D P ++ + I+ E+P P Sbjct: 57 DLVISDLVMPGMGGIEFMDLAKERHPGLPFIFYTALGSIESAVSAIKQGAFDYLEKPLDP 116 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLD-FLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 ++ + ++ + R+ + F I T++P ++E +VA R Sbjct: 117 KTFDVVIQRALEFARLSHENVQLREHFAELFSFQNIVTQSPAMRTVLELASRVAASPRTT 176 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 + L G +G GK LAR I FV VNCA + S LFGHV+GAFTGA Sbjct: 177 VSLTGESGTGKEVLARAIHFASGCLPSN---FVAVNCAAIPEALLESELFGHVRGAFTGA 233 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 REG A GG + LDEIG++ QA LL+ +EE+TF G +R DF++I T Sbjct: 234 ERDREGKFSLARGGTVLLDEIGDMPLPLQAKLLRVLEERTFEKVGDNRPQPVDFRVIVAT 293 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-F 389 RDL QLV +G+FREDLY RIN+ +P LR+R EDI +D+ ++ G ++ Sbjct: 294 YRDLAQLVRKGRFREDLYHRINVVPIAIPPLRERLEDIPLLVDFFLKLFRQHQGKALPGV 353 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 + +A +A +W GN REL + A + I + + + + Sbjct: 354 SKKAMDLLIA------HSWPGNVRELRNVLEYAAIMVSDELIRPEHLRLSSSSPSASALP 407 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKAS 504 S + + AE++ D + + + ++ + L V+R+ Sbjct: 408 SSSGTVEFHISLPAEDVS-LDAVVSRVLESALQRCHGNKSRAAALLKVNRKMFYR 461 >UniRef50_D1RLY9 Transcriptional regulator FleQ n=1 Tax=Legionella longbeachae D-4968 RepID=D1RLY9_LEGLO Length = 468 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 166/391 (42%), Gaps = 33/391 (8%) Query: 147 QPRGPGEVTIIDLDLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAI 205 QP P I L + + + + + + IE+VA Sbjct: 98 QPF-PFSYVQIMEALHQCKIAQETVKSITIGSHRNPIFRSLVGNSTSIRTVRRLIEQVA- 155 Query: 206 KSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKG 265 + A +L+ G +G GK +AR I + F+ +NC + G+ S LFGH KG Sbjct: 156 DTEASVLVLGESGTGKEVVARNIHAFSSR---ANKPFIPINCGAIPGELLESELFGHEKG 212 Query: 266 AFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 AFTGA +R+G AN G LFLDEIG++ Q LL+ ++E+ F GS++ + + + Sbjct: 213 AFTGAITTRQGRFELANSGTLFLDEIGDMPLPMQVKLLRVLQERCFERVGSNKSIDVNVR 272 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T R+L + + EGKFREDL+ R+N++ +P LR+R EDI + + R S Sbjct: 273 IIAATHRNLEEAIKEGKFREDLFYRLNVFPIEMPPLRERAEDIPLIFNELIARIESENRP 332 Query: 386 SVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRY 445 V +A A + +W GN REL+ V R+ G + + + +I Sbjct: 333 IVHLMPDAMAAL------SEYSWPGNIRELANLVERLTILYPKGILNKEDLPQKIRSEYK 386 Query: 446 NWQESRPS------------ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQ 493 + +S T + + + +L + ++ + + Sbjct: 387 TYFDSDTPESEREALLRVISQGTVSSSEGIDLKEHLVKTELALISQALNESDWVVSHAAN 446 Query: 494 LFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 ++ R L + + ++GLT Sbjct: 447 YLNMRR---------TTLVEKMRKYGLTRPE 468 >UniRef50_A0LFW8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A0LFW8_SYNFM Length = 472 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 98/488 (20%), Positives = 195/488 (39%), Gaps = 27/488 (5%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L + + L R ++ + + E+ SV+ L E + +D P Sbjct: 4 KILMVDDEQDMLSLLSRILSDRT-DHEITSVDDPLQ---VTELLKKNDYDLVITDLRMPG 59 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLS 162 ++ + + + + +P + + Sbjct: 60 RDGLGVMEAVKQKNPNTAVIIMTAYGTIESAIEATRKGAFDYVTKPFRKERILHVVDQAL 119 Query: 163 RYNAIASRFAEERQQTL-DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGK 221 ++ + R++ + + + + QI++VA K+ A +L+ G +G GK Sbjct: 120 KWQQLQKENTYLRERLEGKSQFASLIGSSRAMRTLHNQIDRVA-KTSATVLITGESGTGK 178 Query: 222 SFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSA 281 +AR + + + + F+ +NC+TL S LFGH++G+FTGA ++GL+ A Sbjct: 179 ELVARELHKHSLRKDEQ---FIPLNCSTLPESIIESELFGHLRGSFTGALRDKKGLIEEA 235 Query: 282 NGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEG 341 N G LFLDEIG+L Q LL+ ++E + GS+ D + IA T ++L + + G Sbjct: 236 NHGTLFLDEIGDLSMAMQVKLLRLLQEGEYKAIGSNTIRRVDIRFIAATNQNLHEKIRRG 295 Query: 342 KFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAF 400 +FREDL+ R+N+ +P LR+R +DI + +E++ L ++ R + A + Sbjct: 296 EFREDLFYRLNVINIVVPPLRERLDDIPLLVHSFLEKYNVLHHKNIKRVSPVTLNALM-- 353 Query: 401 ATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLG 460 Q W GN REL ++ R A+ + + V + + Sbjct: 354 ----QRDWPGNVRELENTIERGVIMASGNTLETEDVTLPCREAPSSETPLFSEGDIYSMP 409 Query: 461 AEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + L + Q +++ + + + + RQ L + + + Sbjct: 410 FKEAKDKLIEEFQSQYISKALARHSGNVSQAARESGLKRQY---------LHRLMRETNV 460 Query: 521 TWEAVQDQ 528 + + Q Sbjct: 461 DSKTFKKQ 468 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 167/368 (45%), Gaps = 35/368 (9%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 I D+S+ A+ + I R+ + + + +A +S++ +L+ Sbjct: 140 VEIFHDISQIVALKEEL------KGRYSFGRIIGRSEKMQELFDLLPVIA-QSKSTVLIE 192 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A + E R G FV++NCA L S LFGHVKGAFTGA +SR Sbjct: 193 GESGTGKELVAHALHENSPRRE---GPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSR 249 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G A+GG LFLDEIGE+ Q LL+ ++E+ F G + V D ++IA T RDL Sbjct: 250 PGRFELASGGTLFLDEIGEISPSMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDL 309 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEA 393 +Q + EG FR+DLY R+ + TLP LR+RQ D+ + +ER+ + G +++ +EA Sbjct: 310 KQAMEEGSFRKDLYYRLRVIPVTLPPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEA 369 Query: 394 RRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS 453 + L + + GN REL + A RI L + ++ + Sbjct: 370 MKVLLNY------HYPGNIRELQNIIEHAALLCNDSRIDLRHLPGDLLPAQ--------- 414 Query: 454 ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 + ++ L + ++ E + ++ + + + R L + Sbjct: 415 SQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVARKLSMGRS---------TLWR 465 Query: 514 YLARFGLT 521 L L Sbjct: 466 RLKEMKLA 473 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 112/515 (21%), Positives = 193/515 (37%), Gaps = 56/515 (10%) Query: 17 AGRGSQRWSKWRPTLCLCQQESLVIDRLE-----LLHDARSRSLFETLKRDIASVSPETE 71 A R + + R L E D E +H+ + + + + E Sbjct: 162 AARAAAELDRLRMDRMLRDSEERFRDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPE 221 Query: 72 VVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARY 131 + + D + + + + ++ + I W Sbjct: 222 EAVGTVGMSLVPDTPDAQRLVKEAFASIGRGTDTGGVVLELRRKDDGRPI-WIQWWSR-- 278 Query: 132 LPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNP 191 P R Q + E +++ + +R + + I ++P Sbjct: 279 -PDRGGQFTRTVFI----DVTERVLMEREQARLQ--QQNVYLQEELKAAHNFDEIVGQSP 331 Query: 192 HFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLR 251 +++++ KVA + + +L+ G TG GK +AR + + + +++NCA L Sbjct: 332 ALVSVLQRVSKVAG-TDSTVLITGETGTGKELVARAVHSASPRK---AKPLIKLNCAALP 387 Query: 252 GDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTF 311 S LFGH KGAFTGA + G A+GG LFLDE+GEL + QA LL+ ++E+ F Sbjct: 388 THLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLDEVGELSLEAQAKLLRVLQEREF 447 Query: 312 YPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPN 371 G V D ++IA T RDL QLV EG FR DL R+N++ LP LR+R DI Sbjct: 448 ERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLYRLNVFPVRLPALRERPGDIPLL 507 Query: 372 LDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSG- 429 + + V + A G + R + + A + + W GN REL + R A + Sbjct: 508 VRFFVTKFAGRLGKRIERVSGDTLDALVGY------DWPGNIRELENVIERAAILSDGPE 561 Query: 430 -RITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS 488 I DV+ ++ +H+ ++ Q + Sbjct: 562 LVIDPDVLP----------------VTRGGAAPAGAGGQSLVAVEADHIRSVLAQTGWVI 605 Query: 489 A---AGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + + LR + + G+ Sbjct: 606 EGPNGAATVLGLH---------PNTLRSRMKKLGI 631 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 89/351 (25%), Positives = 152/351 (43%), Gaps = 24/351 (6%) Query: 170 RFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRIL 229 +R + LD I + + K A ++ + +L+ G +G GK +A I Sbjct: 215 ENELKRDRKLDKAFDIIIGNSGKLKDALTIASK-AAETDSTVLIRGESGTGKELVANAIH 273 Query: 230 ELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLD 289 + + + F+ VNCA + S LFGH +GAFTGA + G A+GG +FLD Sbjct: 274 YASKRKDK---PFIRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELADGGTIFLD 330 Query: 290 EIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYA 349 EIG++ + Q LL+ I+EK F G + + D ++IA T +DL + + EG FREDLY Sbjct: 331 EIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGTFREDLYY 390 Query: 350 RINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWR 409 R+N+ LP LR+R+ DI +++ + + + A W Sbjct: 391 RLNVIPVILPPLRERRGDIPLLVEHFI-----EKLNKKLNKNVKKVTKKAMQALIYYDWP 445 Query: 410 GNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLF 469 GN REL + R T + + I + + I + + S + E + Sbjct: 446 GNIRELENIIERCITLSDTDYIDYEDLPQYIRN-----ETTTVSDDDIIYLGENSELLTM 500 Query: 470 DRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGL 520 + + + + A ++ KS ++ ++ + +FGL Sbjct: 501 EEYEYKIIKAAIQRYKSF-NKAGKVLGLT---------HKTIAAKARKFGL 541 >UniRef50_A8ZV27 Transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZV27_DESOH Length = 510 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 107/477 (22%), Positives = 192/477 (40%), Gaps = 54/477 (11%) Query: 57 ETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACL-HDFARGYEFQPEKEDYLIHITTG 115 LK + + P + + DF + + H AR +P++ ++ Sbjct: 76 PRLKELLEDILPGNTLFH---DFEVEHDFATIGRKIMHLNARRIYTEPDQTQLILLAIED 132 Query: 116 THVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEER 175 ++ R L + + + + I + LS + + ER Sbjct: 133 VTDR------VSYRRNLEGLVKKKTAELTVALEEAEEKNRIAETSLSEIKKLKQQLEAER 186 Query: 176 -----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILE 230 + L++ I ++ ++ +IE++A S +L+ G TG GK +AR I Sbjct: 187 AYLQEEIKLEYNHEHIIGQSDGLKYVLYKIEQIA-DSDTTVLVLGETGTGKELVARAIHN 245 Query: 231 LKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDE 290 L + +++ ++VNCA L + S LFGH KGAFTGA G ANG LFLDE Sbjct: 246 LSRRKNRT---MLKVNCAALPTNLIESELFGHEKGAFTGAHARHTGRFEVANGTTLFLDE 302 Query: 291 IGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYAR 350 IGEL + Q LL+ +++ F GS D ++IA T R+L + V G FREDL+ R Sbjct: 303 IGELPLELQPKLLRVLQDGEFERLGSSHSTKVDARIIAATNRNLEEEVRNGNFREDLWYR 362 Query: 351 INLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRG 410 +N++ T+P LR R +DI +++ V++ + G ++ T W G Sbjct: 363 LNVFPITMPPLRDRLDDIPLLVEFYVKKISRRMGKTIETIPSKI-----METLQAYPWPG 417 Query: 411 NFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 N REL + R ++ ++ L L + + Sbjct: 418 NVRELENVLERAVINSSGTKLRLVD------------------ELKRPFRGLSSSEKTLA 459 Query: 471 RMQLEHVIAICRQAKSL---SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 ++ +H++ + Q + + ++ + R LR + + ++ Sbjct: 460 AVERDHIVRVLEQTQWKVGGKNSAAEILGLDRS---------TLRARMRKLNISPPK 507 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 103/463 (22%), Positives = 190/463 (41%), Gaps = 35/463 (7%) Query: 53 RSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHI 112 + +K I + + ++V +L + ++ + ++ +H+ Sbjct: 214 EATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLEEKKLDDLFNDPSICSNHPLHL 273 Query: 113 TTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFA 172 Q + + + L+ P E+ G + I+ + Sbjct: 274 -----QNQELHLSVKPSNAVHHVLVDKIPIY--EKKERIGSMIIV----KEIEKVRQFVN 322 Query: 173 EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELK 232 + + ++P F + + ++A + + +L+ G +G GK +A+ I Sbjct: 323 HLSGNQAKITFADMIGQHPCFIEKMNEA-RLAAATDSNVLILGESGTGKEMVAQAIHNES 381 Query: 233 QARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES-REGLLRSANGGMLFLDEI 291 + R++ F+ +NC + D S LFG+V GAFTGA++ G ANGG LFLDEI Sbjct: 382 KRRNK---PFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGTLFLDEI 438 Query: 292 GELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI 351 GE+ + Q +LL+ I+EK G + + D ++IA T +DLR+ V +G FREDL+ R+ Sbjct: 439 GEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFREDLFFRL 498 Query: 352 NLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRAWLAFATSPQATWRG 410 N+ LP LR+R+EDI + + +ER A ++ A + Q W G Sbjct: 499 NVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALM------QYDWPG 552 Query: 411 NFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFD 470 N REL + R+ T +T + +EI + + Q + Sbjct: 553 NIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQ------------VRENVDISRN 600 Query: 471 RMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRK 513 ++ + +I +Q + + +SR D + Sbjct: 601 EIKKQSIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNIWY 643 >UniRef50_C6C1Z7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1Z7_DESAD Length = 465 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 107/454 (23%), Positives = 179/454 (39%), Gaps = 24/454 (5%) Query: 77 IELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARL 136 E +P D EV D + L + A I E + Sbjct: 33 TESSSPEDDREVDTLFVDVESLQKKNKSMTKALDDLWKHYPSASIVVMASEEQTKVAVDA 92 Query: 137 IQSSPPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIA-TRNPHFNR 195 +++ P E+ ++ + + + S R Q + TR+ Sbjct: 93 VKAGAFDYLTHPIEKEELGLVMEKVRESDVLQSELDYLRGQFWNDDSLEYVDTRSKSMRD 152 Query: 196 MIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTA 255 + +I +VA +R +LL G TG GKS +A+ I + F+ V+C + Sbjct: 153 VFAKIRQVAG-TRTTVLLTGETGTGKSLIAKLIHAHSNRKD---MPFISVHCGAIPDTLV 208 Query: 256 MSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFG 315 S LFGH KGAFTGA + G A+ G +FLDEIG + Q LL I+E+ G Sbjct: 209 ESELFGHEKGAFTGAIRRKLGKFELAHEGTIFLDEIGTVSQSVQVKLLNVIQERIIQRVG 268 Query: 316 SDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYE 375 + +S D ++IA T D+ QL EGKFR DL+ R+N++ +P LR+R+EDI + Sbjct: 269 GENDLSVDVRIIAATNEDMGQLCEEGKFRRDLFYRLNVFPIRIPPLRERREDIPRLSEGF 328 Query: 376 VERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLD 434 + + L ++ + + L + W GN REL + R T + D Sbjct: 329 IRQFNGLLNTEIKGIHPQVLDTLLEY------DWPGNVRELENVIERACILETGDILQPD 382 Query: 435 VVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQL 494 ++ + S L A DR + +++ ++ Q + + Sbjct: 383 SFPPDLLDTQGEVVTSPVKTSLPLKEARQI---TVDRFEKQYLSSLLEQCNGVIKTTAEK 439 Query: 495 FDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQ 528 ++ +L K + R GL +++ Sbjct: 440 AGIT---------TRQLSKLMNRHGLKRTDFKNR 464 >UniRef50_C2KAU4 Sigma-54-dependent transcriptional regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C2KAU4_9FLAO Length = 519 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 96/354 (27%), Positives = 158/354 (44%), Gaps = 38/354 (10%) Query: 181 FLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSG 240 GI ++ + EQI +VA S++ +++ G TG GK +A+ + EL + + Sbjct: 200 HGFHGIVGQSEAMQFIFEQITQVA-PSQSNVIIFGETGTGKELIAQAVHELSEFSGKK-- 256 Query: 241 AFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQA 300 + +NCA + + S LFGH KG+FTGA E R+G A+ +FLDEIGEL + QA Sbjct: 257 -MIRINCAAIPANLIESELFGHEKGSFTGATEQRKGKFEQAHNSTIFLDEIGELPLELQA 315 Query: 301 MLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPG 360 LL+ ++EK G ++++ + ++I T R+L + VAEG+FR DLY R+N++ LP Sbjct: 316 RLLRVLQEKEIERIGGNKRIKVNARIITATNRNLEKEVAEGRFRLDLYYRLNVFPIELPP 375 Query: 361 LRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASV 419 LR+R+EDI DY +E+ TG + F+ + +A W GN REL V Sbjct: 376 LRERKEDIPLLADYFLEKLYPKTGKKINGFSQNVVKMMMA------NPWLGNIRELENMV 429 Query: 420 TRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIA 479 R A I IN + + + E+++ Sbjct: 430 ERSMLTAKGDIIREMDFPKVINYQ---------------NTDQEVQVKTLQEFEKEYILK 474 Query: 480 ICRQAKSLS---AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQDQHS 530 I ++ +L + L + + G+ + + Sbjct: 475 IIKKCNGRIFGEIGAAKLLGLP---------PTTLISKMQKLGIEKKHYFRESE 519 >UniRef50_A6DT60 Sigma-54 dependent transcriptional regulator/response regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT60_9BACT Length = 463 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 107/503 (21%), Positives = 193/503 (38%), Gaps = 57/503 (11%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYA 90 + + E L + + ++ + + V + ++ P Sbjct: 6 ILIVDDEIHTCQGLARALKYEWETFTASNGKEAIKIFEDNPVDIILTDVKMPG------- 58 Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG 150 + L + +++ +P Sbjct: 59 ------------MNGIELLRQLKNIRPETPAIVMSAYNETETVVDAVKAGAYDFITKPFR 106 Query: 151 PGEVTIIDLDL-----------SRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 ++ + ++ A A + I ++ ++ Sbjct: 107 LDDLDGVLKTAVQASPSFQLPSTKKATSAQLPAIAQTAKGSKNSPQIIYQSVAMENVLRT 166 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 ++++A +R+ +L+ G TG GK +A+ I + F+ V+CA L + S L Sbjct: 167 VQQIA-PARSSVLITGETGTGKEVIAKAIHAASTRSKKA---FIAVHCAALNANLFESEL 222 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KG+FTGA E R G +A+GG LFLDEIGE+ A Q LL+ +E ++F G + Sbjct: 223 FGHEKGSFTGANEKRIGRFEAADGGTLFLDEIGEIDAATQVKLLRILESRSFERVGGNET 282 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + SD +LIA T RDLR++V G+FREDLY R+++ LP LR R+EDI L + + Sbjct: 283 LYSDARLIAATNRDLRKMVQAGEFREDLYYRLDVINLELPPLRDRREDIPALLQHWLISS 342 Query: 380 ASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 + +V+ F +A + W GN REL V RMA + + L + D Sbjct: 343 VTENQLNVKGFTADAMARLCTY------DWPGNVRELRNVVERMAVLSQQEYLDLPNLPD 396 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVS 498 + E+ + + + ++ +++ + + +S Sbjct: 397 HVLLGEQQLSETAKI-------EDKDKALDVAENEKVLILKALKESNNNRTLAAERLGMS 449 Query: 499 RQGKASVNDADRLRKYLARFGLT 521 R+ L + L +FG+T Sbjct: 450 RR---------TLHRRLKQFGIT 463 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 103/381 (27%), Positives = 173/381 (45%), Gaps = 25/381 (6%) Query: 149 RGPGEVTIIDLDLSRYNAIASRFAEERQQTL--DFLKSGIATRNPHFNRMIEQIEKVAIK 206 R EV + L + E ++ + I + E K+A + Sbjct: 222 RDIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMA-KIASQ 280 Query: 207 SRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGA 266 S + +L+ G +G GK A I + R GAF+ VNCA + + + LFG+ KGA Sbjct: 281 SDSTVLIRGESGTGKELFAHAIHDGSLRR---YGAFIRVNCAAIPENLLEAELFGYEKGA 337 Query: 267 FTGARE-SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQ 325 FTGA + + G ANGG +FLDEIG++ D Q LL+A++E+ GS+R + D + Sbjct: 338 FTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLDVR 397 Query: 326 LIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD 385 +IA T R+L QL+A+ KFREDLY R+N++ +P LR+ ++D+E +++ ++ G Sbjct: 398 IIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEMGL 457 Query: 386 SV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN--R 442 +V ++EA + ++ W GN REL + R A IT D + + Sbjct: 458 NVNGVSSEANKILNSY------HWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWA 511 Query: 443 LRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGK 502 Q + S + E + + + +Q + +L ++ R G Sbjct: 512 GAEEQQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSG- 570 Query: 503 ASVNDADRLRKYLARFGLTWE 523 L K L + ++ + Sbjct: 571 --------LYKKLEEYNISDQ 583 >UniRef50_C7PBZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Sphingobacteriales RepID=C7PBZ0_CHIPD Length = 481 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 113/511 (22%), Positives = 198/511 (38%), Gaps = 75/511 (14%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 EL+ R E ++ V+ I++ P + + Sbjct: 11 ELIVAGDIRLTLERAGYKVSGVARSVHRALEIIDVERPD----------LVLLDIYLKGD 60 Query: 105 KEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 + + + H + R + + P +P ++ ++ LD++RY Sbjct: 61 QTGIDLAVELNKHNIPFVYLSANCNRQVLEAAKVTQPYGFIVKPFREKDL-LVTLDIARY 119 Query: 165 NAIASRFAEERQQTLDFL----------------------------KSGIATRNPHFNRM 196 R + + + GI + R+ Sbjct: 120 RYEHHRVLKVKPGIVSQSDDLRLPALPVQQAPVPEVKKEVVPPIPNFEGIIGSSIPMQRV 179 Query: 197 IEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAM 256 E I +VA +L+ G TG GK +A I L + + FV+VNCA L Sbjct: 180 FELIRQVA-PLDTSVLVLGETGTGKEGVANCIHHLSPRK---AKPFVKVNCAALPTHLIE 235 Query: 257 STLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGS 316 S LFGH KGAFTGA E R G A+GG +FLDEIG++ AD Q LL+ ++EK G Sbjct: 236 SELFGHEKGAFTGALEKRIGKFERADGGTIFLDEIGDMPADLQVKLLRVLQEKEIERIGG 295 Query: 317 DRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEV 376 + + + ++IA T R+L + +AEG+FR DLY R++++ L LR+R++DI + + + Sbjct: 296 NGPIKVNVRIIAATNRNLEKEIAEGRFRLDLYYRLHVFPIMLSALRERRDDIPLLIAHFI 355 Query: 377 ERHASLTGDSVR-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDV 435 +AS TG V A R + +A W GN REL + R + I + Sbjct: 356 RLYASATGKGVSDIAPAALRQLMDYA------WPGNVRELQNLIERSVLLSRESIIREVI 409 Query: 436 VEDEINRLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGR 492 + + + + + +I ++ EH++ + ++ + Sbjct: 410 LPVSVKK-------------ETTVVSTETDIKTIVELEREHILTVLKKCNHKISGPGGAA 456 Query: 493 QLFDVSRQGKASVNDADRLRKYLARFGLTWE 523 +L ++ L + + G+ Sbjct: 457 ELLNLP---------PSTLASKMKKLGIVKR 478 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 125/484 (25%), Positives = 198/484 (40%), Gaps = 57/484 (11%) Query: 68 PETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIH-------------ITT 114 P +V V+ + E V+A L + + E+Y++ TT Sbjct: 4 PSLHIVVVDDDPGTCVYIESVFAELGHTCKSFVRPEAAEEYILTHPVDLAIVDVYLGSTT 63 Query: 115 GTHVAQICWFLLAE----------ARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSRY 164 G V + C + + + AR I ++P + I + Sbjct: 64 GVEVLRRCRVHRPKLYAVIITGQISLEMAARSIAEGAVDYIQKPIDIDALLNIAERALEH 123 Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 + E++++ S I +P + + I +VA S A +L+ G +G GK + Sbjct: 124 KERSGETPAEQEESE----SKIVGSSPSMLEVYKLIARVA-PSNANVLITGASGTGKELV 178 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 AR I E + F VNC + S LFGH KGAFTGA R+GL+ S GG Sbjct: 179 ARAIHEHSRR---AEMPFTPVNCGSFAETLLESELFGHEKGAFTGADSVRKGLIESTQGG 235 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 LFLDEI E Q LL+ ++E+ GS++ + D +++A T RD+ L+ EGKFR Sbjct: 236 TLFLDEITETSLGFQVKLLRVLQEQQLRRIGSNKIIPIDVRILAATNRDVPSLIREGKFR 295 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP 404 EDLY R+ + +P L +RQ DI + + + + V A Sbjct: 296 EDLYYRLAVVQIKIPMLAERQSDIPSLVTHFLRQFNERNQARVSIEQSAVELL------Q 349 Query: 405 QATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAE 464 + +W GN REL ++ R+A FA++GRIT VE E + S Sbjct: 350 KRSWPGNVRELENTIYRLAIFASTGRITGADVERE-----------QESQKNGPKAEPVS 398 Query: 465 NIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEA 524 D M+ ++ I + + + + R+ L K R G+T +A Sbjct: 399 APDRLVEMERHQILRILKDVHGNKSEAARRLGIERK---------TLYKKAVRLGITLDA 449 Query: 525 VQDQ 528 + Q Sbjct: 450 SEYQ 453 >UniRef50_D2U436 Two-component system, NtrC family, nitrogen regulation response regulator n=2 Tax=Proteobacteria RepID=D2U436_9ENTR Length = 475 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 100/458 (21%), Positives = 165/458 (36%), Gaps = 39/458 (8%) Query: 83 WDFEEVYACLHDFARGYEFQPEKEDYLIHITTGT--HVAQICWFLLAEARYLPARLIQSS 140 + D P+ + + I Q Sbjct: 38 SVLIALEKTCPDVLISDIHMPDNDGLTLLTRLKQSHPKLPIIIMTAHSDLNTAVNAYQQG 97 Query: 141 PPRKKEQPRGPGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 +P E ++ Y + S I P + I Sbjct: 98 AFDYLPKPFDIDETILLVKRALNYYRNQQPNTRSNSPPTAAV-SKIIGEAPAMQEVYRII 156 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 ++ +S +L+NG +G GK +A + + +G F+ +N A + D S LF Sbjct: 157 GRL-SRSSISVLINGESGTGKELIADALHRHSP---KATGPFIALNMAAIPKDLIESELF 212 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH KGAFTGA + R+G A+GG LFLDEIG++ D Q LL+ + E FY G + Sbjct: 213 GHEKGAFTGASQVRQGRFEQAHGGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYTPI 272 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 D ++IA T + L QLV EGKFREDL+ R+N+ LP LR+R EDI Y + + A Sbjct: 273 KVDVRIIAATHQCLEQLVQEGKFREDLFHRLNVIRIPLPPLRERTEDIPHLARYFLHQTA 332 Query: 381 SLTGDSVRF-NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDE 439 G + + ++ W GN R+L + + ++S I + + Sbjct: 333 QQLGVESKILAPQTETILMSL------PWSGNVRQLENVCSWLTVMSSSQMILPQDLPSD 386 Query: 440 INRLRYNWQESRPSALTALLGAEAE----------------NIDLFDRMQLEHVIAICRQ 483 + + + + + T + +++ + Sbjct: 387 LQQNQQFLYSPKKTLATNNEKWLDPLANWTKTALENNKQNLLQQVLPQIERTMLECALTY 446 Query: 484 AKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 K +L R + L + L FG++ Sbjct: 447 TKGHKQEAARLLGWGR---------NTLTRKLKEFGMS 475 >UniRef50_D1N7U7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7U7_9BACT Length = 462 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 112/491 (22%), Positives = 182/491 (37%), Gaps = 47/491 (9%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 D +L + E + R + +V E + D Sbjct: 3 DSARILIVDDEHNTREAMARYLRLRF------NVATAADGGEAIELLKHEDFDLVLTDLR 56 Query: 102 QPEKEDYLIH-ITTGTHVAQICWFLLAEAR-YLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 P+ + + T C L A ++ +P ++ + Sbjct: 57 MPKADGMSVLEATASKANRPACILLTAYGSIGDAVAAVKKGAFDFVAKPVKLDKLEAVID 116 Query: 160 DLSRYNAIASR--------FAEERQQTLDFLKSGIA--TRNPH--FNRMIEQIEKVAIKS 207 A+ + GI T +P +++ ++ VA + Sbjct: 117 AALAARRKAAEDKAAQAEATVAATAPAVAAPPPGIVLPTDDPANPMTKVMSLVKTVA-PT 175 Query: 208 RAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAF 267 R+ +LL G +G GK AR I + +G FV V+CA L S LFG+ KGAF Sbjct: 176 RSTVLLTGESGTGKEVFARMIHDWSGR----TGYFVPVHCAALTATLLESELFGYEKGAF 231 Query: 268 TGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLI 327 TGA E +G A+ G LFLDEIGE+ Q LL+ +E ++F G + D +L+ Sbjct: 232 TGAAERHKGRFEVADHGTLFLDEIGEIDPATQVKLLRVLETRSFERVGGTETIKVDVRLV 291 Query: 328 AGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV 387 A T RDLR++V+EG FREDL+ R+++ LP LR R+ DI + + A V Sbjct: 292 AATNRDLRKMVSEGTFREDLFYRLSVVNLELPPLRDRKSDIPGLIHSFIAEFARENERDV 351 Query: 388 R-FNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN 446 +A +A+ W GN REL + M A + + + + Sbjct: 352 TGIAPDALAELVAY------PWPGNIRELRNCIECMVVLAREKILRKSDIPEAVRN---- 401 Query: 447 WQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 P + A I+ F+ + + + + +L +SR+ Sbjct: 402 --HENPVPPGSAATAPEPEIETFENSERKLIEKALAECNGNRTQAAKLLGISRR------ 453 Query: 507 DADRLRKYLAR 517 L + LA Sbjct: 454 ---TLHRRLAE 461 >UniRef50_Q4JMY3 Predicted nitrogen regulation protein VV0196 n=1 Tax=uncultured bacterium BAC13K9BAC RepID=Q4JMY3_9BACT Length = 467 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 99/445 (22%), Positives = 178/445 (40%), Gaps = 43/445 (9%) Query: 94 DFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGP 151 D P ++ + +P Sbjct: 48 DLIITDIKMPGMSGLEFLDKVSEKFPNLPTIIITAHANIDNALSAYKGGAFEYLTKPFDI 107 Query: 152 GEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPI 211 E+ + + ++ + + + S I + + + I K+ K+ + Sbjct: 108 NEIRKLAIKATKSSK------PQHDELTQESNSQIVGKAESMQEVFKAIGKI-SKTDITV 160 Query: 212 LLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGAR 271 L+ G +G GK +A+ + E +Q F+ +N A + + S LFGH KG+FTGA+ Sbjct: 161 LIRGESGTGKELIAQSVHENSSRSNQ---PFIAINVAAIPHELLESELFGHEKGSFTGAQ 217 Query: 272 ESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTV 331 R G A GG LFLDEIG++ + Q LL+ + FY G + + SD ++IA T Sbjct: 218 SQRIGRFEQALGGTLFLDEIGDMHPELQTRLLRVLSSHEFYRVGGQKPIKSDVRIIAATN 277 Query: 332 RDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FN 390 +++ L+ GKFREDLY R+N++ LP LR+R+EDI + Y +++ A ++ Sbjct: 278 QNIEGLIKVGKFREDLYHRLNVFRIELPPLRKRKEDIPSLVKYFLKKSADEIKSDLKDIE 337 Query: 391 TEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEIN--------- 441 A + W GN R+L + + A S ITLD + DE+ Sbjct: 338 DPAMEVL------NEYDWPGNIRQLENTCRYITVMAPSTSITLDDIPDEVKNVDMSLGDP 391 Query: 442 ------RLRYNWQESRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLF 495 NW+ES + + ++L + +L ++ + + +K ++ Sbjct: 392 NHFNGLGSNGNWEESLSNHIRSVLQDMNDLTNLSKDLEKILLQEALKASKGRRIDAAKIL 451 Query: 496 DVSRQGKASVNDADRLRKYLARFGL 520 + R + + + + GL Sbjct: 452 GIGR---------NTITRKIKDLGL 467 >UniRef50_Q1Q6P9 Similar to Sigma-54 dependent transcriptional regulator n=2 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q6P9_9BACT Length = 512 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 88/374 (23%), Positives = 166/374 (44%), Gaps = 23/374 (6%) Query: 154 VTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILL 213 + + +L N + + ++ + + IEKV ++ + +L+ Sbjct: 161 LKALFQELEVKNTTIRSLQTS--LRERYSFHSLIGKSYLMQNIYDLIEKV-SQTDSTVLI 217 Query: 214 NGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARES 273 G TG GK +AR I + V VNCA L S LFGHVKG+FTGA Sbjct: 218 TGETGTGKELVARAIHYNSHRKDYN---LVAVNCAALPETLLESELFGHVKGSFTGAIRD 274 Query: 274 REGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRD 333 ++G A+ G +FLDEIGEL Q LL+ ++E+ G ++ + D ++IA T +D Sbjct: 275 KKGKFELADKGTIFLDEIGELSIPTQVKLLRVLQERYIERVGDEKTIKVDIRIIAATNQD 334 Query: 334 LRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTE 392 + +L+ +G FR+DL+ R+N+ + LP L++R +DI +++ +E+ ++ + Sbjct: 335 ILELIEKGTFRKDLFYRLNIISIRLPSLKERTDDIPLLVNHFIEKFNIRFKKNINGISPN 394 Query: 393 ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRP 452 A R LA+ +W GN REL + + S I + + + N +P Sbjct: 395 ALRKLLAY------SWPGNIRELEGVIEKAVLLEESETIENIELPTD-HSATTNLCLPKP 447 Query: 453 SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLR 512 + + + D ++ E+ +++ ++ + ++R+ + Sbjct: 448 LNAGPDISSYEDLQKRLDMLEREYFVSVFQKHHGRIGSIAACTGLNRR---------TIL 498 Query: 513 KYLARFGLTWEAVQ 526 + +F L + Sbjct: 499 NKMKKFSLKKSLFK 512 >UniRef50_B8DQ72 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfovibrio RepID=B8DQ72_DESVM Length = 486 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 113/504 (22%), Positives = 184/504 (36%), Gaps = 49/504 (9%) Query: 45 ELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPE 104 ++L L ++ +R +A + V + V L + P Sbjct: 3 KILIVDDELQLRQSFQRLLAGEGHD-----VRAASTGEQGIKLVREELPELVIMDVRMPG 57 Query: 105 KEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG-PGEVTIIDLDL 161 + I + + +P P + +I+ + Sbjct: 58 MDGLTALRAIREIDARLPVVIMTAYSTTETAIEATKLGAFDYILKPFEIPDILALIEQAV 117 Query: 162 SRYNAIASRFAEERQ----QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPT 217 + +R + L + + +++ + I + A + A +L+ G + Sbjct: 118 EAGRRMRARVDMVADGDDGTGQETLGEALVGTSRAMHQVYKAIGR-AAPTDALVLVRGES 176 Query: 218 GAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGL 277 G GK +AR + + + F+ +NC + S LFG+ KGAFTGA R G Sbjct: 177 GTGKELVARAVYQHSLRGEK---PFLIINCVAIPDTLLESELFGYEKGAFTGATNRRVGK 233 Query: 278 LRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQL 337 + ANGG +FLDEIG++ QA LL+ ++EK G + + D ++IA T DL Sbjct: 234 IEQANGGTVFLDEIGDMPLGIQAKLLRLLQEKQIERLGGRQPIPVDVRIIAATNTDLEAA 293 Query: 338 VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRFNTEARRA 396 VA+G+FREDLY R+ + T LP LR+R EDI P Y + R + EA Sbjct: 294 VADGRFREDLYYRLKVVTLWLPPLRERSEDIPPLARYFLARFSREMDMPNPGITPEALAY 353 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 A W GN REL SV + F+ G + ++ + R S A Sbjct: 354 LEA------QPWPGNVRELGNSVHKALVFSRGGPLGEPDLKQALEASRGVRPGSEGPACD 407 Query: 457 ALLGAEAENID-----------------LFDRMQLEHVIAICRQAKSLSAAGRQLFDVSR 499 L A+ + L D + V +L +SR Sbjct: 408 LSLAADQTMQELIRRTLSESDGDNVFDSLMDHVGRLVVREALHLTGGNRTRAARLLGLSR 467 Query: 500 QGKASVNDADRLRKYLARFGLTWE 523 L + ++GL E Sbjct: 468 P---------TLLAKIEKYGLRIE 482 >UniRef50_B3E6U1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Desulfuromonadales RepID=B3E6U1_GEOLS Length = 467 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 109/490 (22%), Positives = 190/490 (38%), Gaps = 29/490 (5%) Query: 42 DRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEF 101 D+ +L L +++ + + ++ EE A D Sbjct: 3 DKQRILLIDNEEGLCRMMEQVLLDSGYLVRAYTSPVKA-----MEEFSAAAWDLVITDIK 57 Query: 102 QPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 P + + + + + ++ +P P E+ Sbjct: 58 MPGMTGLEVLQRVKEKCRDLPVIIITAYATVEMSIQALRKGAYDMLTKPFEPDELVFRVK 117 Query: 160 DLSRYNAIASRFAE-ERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 + + + E R+ I + +++++ KVA + IL+ G +G Sbjct: 118 NALQQAQLTEENRELRREIEEKLQFDNIIGSSGALRNVLDKVAKVAGR-DTSILITGESG 176 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +A+ + + G F+ VNC L S LFG+ KGAFTGA E+R+GLL Sbjct: 177 TGKELIAQAVHIHSNRKE---GRFMAVNCGGLPESILESELFGYRKGAFTGAAENRQGLL 233 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 +A+GG LFLDE+G L + Q LL+ ++EK F G D ++I+ T DL++ V Sbjct: 234 EAADGGTLFLDEVGNLPMNVQKTLLRFLQEKEFRRVGDTNSTRVDVRIISATNADLKEGV 293 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAW 397 G FREDLY R+N+ LP LR R +DI + + G +V+ F +A + Sbjct: 294 RTGTFREDLYYRLNVVNLHLPPLRDRIDDIPLLAAHFIHLQNQKFGTAVKAFERDAMQIL 353 Query: 398 LAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTA 457 F W GN R+L + S I+LD + I L Sbjct: 354 CTFE------WPGNIRQLRNVIEACMAMEASDYISLDTLGQVI-DLPEGRIVPATVQAGP 406 Query: 458 LLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 +L + + +R + + + + ++ + + ++ L + + R Sbjct: 407 VLSDDLPFTEALERFERDLLRDLLKKHGGAVDSAAREAGMN---------VATLYRKIKR 457 Query: 518 FGLTWEAVQD 527 +GL E D Sbjct: 458 YGLKKEEYAD 467 >UniRef50_Q7UNH5 Acetoacetate metabolism regulatory protein ATOC n=2 Tax=Planctomycetaceae RepID=Q7UNH5_RHOBA Length = 485 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 123/500 (24%), Positives = 193/500 (38%), Gaps = 38/500 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L L +L +A ET + + + D G E + Sbjct: 7 ILLVDDDHHLATSLGEWLAEEGFETHLAGTLEDARQQLKQHAFELVITDLRLGGE---DG 63 Query: 106 EDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTI-IDLDLSRY 164 + + + +++ +P E+ + ID +++ Sbjct: 64 MTLVSDVKKHHSDTPVLVMTGYATPNTAVEAVRAGAVDLLTKPVIDDELLLAIDRAMNQR 123 Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 A RQ I + + ++ + I+ VA ++A IL+ G G GKS + Sbjct: 124 KIEAENETLRRQLDQRSGLENILSHDYRMMKIFDVIDSVA-DAKASILITGENGTGKSMI 182 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 AR I + SG F+EV C L S LFGHV GA+TGA R G A+GG Sbjct: 183 ARAIHN---RCARRSGPFIEVACGALPDTLLESELFGHVAGAYTGANTDRRGKFELADGG 239 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 LFLDEI Q LL+ ++E F P G S D ++I T +L Q VA+G FR Sbjct: 240 TLFLDEIATATPAMQVKLLRVLQELQFEPLGGMETRSVDTRVILATNENLDQAVADGSFR 299 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNTEARRAWLAFATS 403 +DLY RIN+ LP LR+R DI +D+ + A G + F+ EA + ++A Sbjct: 300 QDLYYRINVVNIVLPSLRERTGDIPLLVDHFLREAAETAGRDIDGFDREAMKCLQSYA-- 357 Query: 404 PQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYN--------------WQE 449 W GN R+L V R AT +T D + ++ N Sbjct: 358 ----WPGNVRQLENVVERAVLLATDRVLTKDDLPPDVLGTSANQHASIGSVGHSPGVTAS 413 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 S S+ + + + + E ++ R+ AA +++R Sbjct: 414 SGASSFNPAVLDGCSLREALEGPEREIILHSLRRHNWNRAATADELEINR---------T 464 Query: 510 RLRKYLARFGLTWEAVQDQH 529 L K + R GL +Q + Sbjct: 465 TLYKKMKRLGLDDPRLQYAN 484 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 102/420 (24%), Positives = 178/420 (42%), Gaps = 36/420 (8%) Query: 112 ITTGTHVAQICWFLLAEARYL-PARLIQSS----PPRKKEQPRGPG--EVTIIDLDLSRY 164 TG + + + + +I+ K P E+ L Sbjct: 205 ACTGLSQTSEVLTIRGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHK 264 Query: 165 NAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 ++ +T + + +P ++ ++I VA + + +L+ G +G GK + Sbjct: 265 VTFFQE-ELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATST-STVLITGESGTGKEGV 322 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE-SREGLLRSANG 283 A I + G F++VNCA++ S +FG+V GAFTGA + + G + A+G Sbjct: 323 AHAIHLGS---DRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADG 379 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G LFLDEIGE+ QA LL+ ++++ GS + + +++A T + L +A+G+F Sbjct: 380 GTLFLDEIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEF 439 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVR-FNTEARRAWLAFAT 402 R+DLY R+N+ LP LR+R EDIEP + + + + +V A L Sbjct: 440 RQDLYYRLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLL---- 495 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAE 462 Q +W GN REL V R + SG I L + +I + + Sbjct: 496 --QYSWPGNIRELENVVERAVNYTRSGLIELIHLPHQIISGNTALGQV-------MNKKT 546 Query: 463 AENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARFGLTW 522 + D +++ + + A +A +L ++SR RL L ++ L Sbjct: 547 IRHQDRLGQIERDMIAAALEKAGGNKTKAAKLLNLSRS---------RLYDKLNKYDLNT 597 >UniRef50_B8DK61 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfovibrio RepID=B8DK61_DESVM Length = 448 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 115/483 (23%), Positives = 190/483 (39%), Gaps = 43/483 (8%) Query: 43 RLELLHDARS--RSLFETLKRDIASVSPETEVVS-VEIELHNPWDFEEVYACLHDFARGY 99 R+ ++ D + L L ++ V S +E + P+D L D Sbjct: 5 RVAIVDDEPVVCKRLSHALFKEGYEVEAFMSARSFLEAMIDRPFDVVFSDMRLPDM---- 60 Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 + + L I ++ + ++ +P E+ I Sbjct: 61 ----DGLELLPKIKALRPETEVVIVTGYGSIQTAIEAMREGAFHYVTKPVNFTEIRAIAR 116 Query: 160 DLSRYNAIASRFAEERQ-QTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 + A R+ S I +P + + KVA +L+ G +G Sbjct: 117 RAQEKIGMRMENARLREALLGSSGLSSIVGNSPAIQDLFALVRKVA-PVDCNVLIQGESG 175 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK+ +A + L ++Q FV NC + S LFG+ KGAFTGA S+ GLL Sbjct: 176 TGKALVALALHHLSPRKNQ---PFVTFNCGGFTEELISSELFGYEKGAFTGASASKVGLL 232 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 +A+GG +FLDE+GE+ Q LL ++E+ G + V D ++IA T RDL+ V Sbjct: 233 EAASGGTVFLDEVGEMPLSMQVRLLHVLQERRILRVGGTKPVDLDIRVIAATNRDLKAEV 292 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL 398 +G FREDL+ R+N+ + TLP L R+EDI + + ++++ SV+ E Sbjct: 293 EKGTFREDLFFRLNVVSTTLPRLADRREDIPLLVRHFIDKYGLAFRKSVQGIDE-----Q 347 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTAL 458 A A ++ GN REL + R I L + ++I L Sbjct: 348 ALAALQGYSFPGNVRELENIIERAVALTDGQTIGLLDLPEDIRNLE-------------F 394 Query: 459 LGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLARF 518 E + + ++ +VI I + Q+ V R L + L + Sbjct: 395 ATLEGDGLPTLAEVERRYVIRILEKTGYNKRLAAQVLGVPR---------TTLWRKLKEY 445 Query: 519 GLT 521 G+ Sbjct: 446 GVE 448 >UniRef50_A6EHC6 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHC6_9SPHI Length = 646 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 34/358 (9%) Query: 172 AEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILEL 231 +E Q L+ GI ++ + +I+ VA +L+ G +G GK +A I +L Sbjct: 320 LKEVQVPLESDFHGIIGQSSLLKDVFRKIQLVAAD-DTSVLILGESGTGKERVAHTIHKL 378 Query: 232 KQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEI 291 + S V VNCA L S LFGH KGAFTGA + R G A+GG +FLDEI Sbjct: 379 SPRK---SKPMVTVNCAALPLTLIESELFGHEKGAFTGANDKRIGKFEQADGGSIFLDEI 435 Query: 292 GELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI 351 GEL + Q LL+ ++EK G + + ++I T R+L + VAEG+FR DLY R+ Sbjct: 436 GELPLEAQVKLLRVLQEKEIERLGGNGTKKINVRIITATNRNLEKEVAEGRFRLDLYYRL 495 Query: 352 NLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGN 411 N++ LP LRQR+EDI + +++++ + + A + Q W GN Sbjct: 496 NVFPIELPSLRQRKEDIPLLSHHFIKKYSKNASAQIGGVSAA-----SMEELQQYDWPGN 550 Query: 412 FRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALTALLGAEAENIDLFDR 471 REL + R + + A + I + Sbjct: 551 IRELEHLIERSVLLSKEEE-------------ITTIIVPTTTPSLAGSNSGEFRIKTMEE 597 Query: 472 MQLEHVIAICRQAKSLS---AAGRQLFDVSRQGKASVNDADRLRKYLARFGLTWEAVQ 526 M+ +H+++I + K ++ ++ + L + + G+ +E ++ Sbjct: 598 MERDHILSILKMCKGKVFGPGGAAEILNMP---------STTLNSKIKKLGIKYEYIK 646 >UniRef50_Q220U8 Two component, sigma54 specific, transcriptional regulator, Fis family n=14 Tax=Proteobacteria RepID=Q220U8_RHOFD Length = 453 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 120/483 (24%), Positives = 190/483 (39%), Gaps = 46/483 (9%) Query: 31 LCLCQQESLVIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYA 90 L L +Q +DR E + S L++ + +V V ++L P D + V Sbjct: 16 LALQKQIKWSLDRFESVTAHDRSSALLQLRKCLPAV--------VTMDLGLPPDADSVSE 67 Query: 91 CLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRG 150 L + F P+ + + TG + R + +P Sbjct: 68 GLKLLEQVMAFDPD---IKVIVLTGQNDQA-----------NALRAVAMGAYDFFAKPFE 113 Query: 151 PGEVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAP 210 P + + R + + +G+ TR+P R+ IEKVA S A Sbjct: 114 PELLNLTVERAFRMFELQRENRRLQALQQPDAMAGLITRDPEMLRICRTIEKVAS-SNAT 172 Query: 211 ILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGA 270 ++L G +G GK LAR + + R + FV +NCA + + S LFG+ KGAFTGA Sbjct: 173 VMLLGESGTGKEVLARGLHQASPRRAEK---FVAINCAAIPENLLESELFGYEKGAFTGA 229 Query: 271 RESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGT 330 + G + A+GG L LDEIG+L QA LL+ ++E+ G ++++ D +++ T Sbjct: 230 AKMTLGKIEMAHGGTLMLDEIGDLPLSLQAKLLRFLQERVIERVGGRQEIAVDVRIVCAT 289 Query: 331 VRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDS-VRF 389 +DL L +G+FREDLY R+ +P LR+R D V R A S + Sbjct: 290 HQDLAALSKDGRFREDLYYRLAEIVVNIPPLRERVGDAALLAHAFVRRFAQEQNRSAMTL 349 Query: 390 NTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQE 449 +A +A W GN REL + R A A +I D + Sbjct: 350 TEDAVQA------VENHLWPGNIRELENCIRRAAIMADGSQIGCDDL------------- 390 Query: 450 SRPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDAD 509 S + + D + ++A + L VSR + Sbjct: 391 GLKSLQNDETDTSLDLRVIRDDAEKRAIVAALGRVNGNMVRAADLLGVSRPTLYDLMHRL 450 Query: 510 RLR 512 L+ Sbjct: 451 ALK 453 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 124/488 (25%), Positives = 204/488 (41%), Gaps = 27/488 (5%) Query: 40 VIDRLELLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGY 99 I RL +L + + S V L E Sbjct: 14 SIARLHVLVVEEDPMVRASCCEIAQSHGFAAHGVEH---LQAARGLLESNGVDIVLVDQR 70 Query: 100 EFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDL 159 + L + I + +++ +P E+T + Sbjct: 71 AAMGPGFELLDRLRALHPETAIVVMAAVSSVSAAVEAMRAGAHDYLIKPFSLEELTSVLD 130 Query: 160 DLSRYNAIASRFAEERQQTL-DFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG 218 L+R+ + + R++ I ++P ++ + KVA + P+L+ G +G Sbjct: 131 RLARHRTMDTASRGLREKLRLQGGFGNIVGQSPEMEKLYRILSKVAQTTH-PVLILGESG 189 Query: 219 AGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLL 278 GK +AR I H S F+ V+C+++ S LFGHVKGAFTGA +R+GLL Sbjct: 190 TGKELVARAIHVHG---HYASKPFLPVDCSSIVPTLMESELFGHVKGAFTGATRARDGLL 246 Query: 279 RSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLV 338 +A GG +FLDEIGE+ D QA LL+A++EK P G+ +V + +++A T R+L ++V Sbjct: 247 VAAEGGTVFLDEIGEMPLDLQAKLLRALQEKEVRPVGATHRVKINVRILAATNRNLAEMV 306 Query: 339 AEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWL 398 +G+FR DLY R+N+ LP LR+R+EDI + ++R G R + EA Sbjct: 307 EQGRFRRDLYYRLNVVKLVLPPLRERREDIPLLAAHFLDRIGREYGKKFRLSAEALAM-- 364 Query: 399 AFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINR---LRYNWQESRPSAL 455 + W GN RELS ++ R +F + ++ + + Q RP Sbjct: 365 ----ISEYPWPGNVRELSNALDRACSFCSGEQVQAGDLTSPVKDFYLQHAAMQRKRPRTR 420 Query: 456 TALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYL 515 L AEAE + ++ +++ Q K +L D+ L + L Sbjct: 421 AELPEAEAEVLS-LAEIEKRAILSTLAQVKGDKLLAARLLDIG---------KTTLYRKL 470 Query: 516 ARFGLTWE 523 +G+ E Sbjct: 471 KEYGVAEE 478 >UniRef50_P28787 Nitrogen regulation protein NR(I) n=29 Tax=Gammaproteobacteria RepID=NTRC_PROVU Length = 473 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 105/454 (23%), Positives = 164/454 (36%), Gaps = 37/454 (8%) Query: 84 DFEEVYACLHDFARGYEFQPEKEDYLIH--ITTGTHVAQICWFLLAEARYLPARLIQSSP 141 + + + D P+ + + I + Q Sbjct: 39 VLKALNSEQPDVLLSDIRMPDMDGLSLLKIIKEQYPTLPVIIMTAHSDLDAAVNAYQQGA 98 Query: 142 PRKKEQPRGPGE-VTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQI 200 +P E + +I+ ++ Y E S + P + I Sbjct: 99 FDYLPKPFDIDETLALIERAITHYREQKQPNNAENILQ---SVSDMIGEAPAMQEVYRII 155 Query: 201 EKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLF 260 ++ +S +L+NG +G GK +A + F+ +N A + D S LF Sbjct: 156 GRL-SRSSISVLINGESGTGKELVAHALHRHSPR---ALAPFIALNMAAIPKDLIESELF 211 Query: 261 GHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQV 320 GH KGAFTGA + R+G ANGG LFLDEIG++ D Q LL+ + E FY G V Sbjct: 212 GHEKGAFTGASQVRQGRFEQANGGSLFLDEIGDMPLDIQTRLLRVLAEGQFYRVGGYAPV 271 Query: 321 SSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHA 380 D ++IA T +DL + V EG FREDLY R+N+ LP LR R EDI Y +++ A Sbjct: 272 KVDVRIIAATHQDLEKRVNEGDFREDLYHRLNVIRIQLPPLRDRTEDIPSLARYFLQKTA 331 Query: 381 SLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEI 440 G + E + T + W GN R+L + S I + EI Sbjct: 332 KELGVETKSLHE-----QSLKTMMEYVWSGNVRQLENVCRWLTVMTASQEIMPQDLPSEI 386 Query: 441 NRLRYNWQESRP-------------SALTALLGAEAENIDLFDRMQLEHVIAICRQAKSL 487 + + G E D + + +++ + Sbjct: 387 RLADEKAKNINRLTSQHWSQHLSLWADEALGEGKENILNDALPQFERTLLLSALAYTQGH 446 Query: 488 SAAGRQLFDVSRQGKASVNDADRLRKYLARFGLT 521 +L R + L + L G+ Sbjct: 447 KQDAARLLGWGR---------NTLTRKLKELGIE 471 >UniRef50_Q39TH4 Transcriptional regulator, NifA subfamily, Fis family n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TH4_GEOMG Length = 556 Score = 473 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 106/436 (24%), Positives = 177/436 (40%), Gaps = 48/436 (11%) Query: 105 KEDYLIHITTGTHVAQICWFLLAEA-RYLPARLIQS----SPPRKKEQPRGPGEVTIIDL 159 K + I+ G HV + R P L+ R E+ I Sbjct: 154 KSQVSVPISVGGHVFGTLSLATVRSYRSWPDELVPRLRLVGEIFANALVRKQKELQ-IRK 212 Query: 160 DLSRYNAIASRFA-----EERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 + + A + L++ I ++ R++ +I+++A+ + +L+ Sbjct: 213 AFQQIKELNEELAADCTYLREEIDLNYDVHHIIGQSLPLKRVLAKIQQIAL-TDTTVLIL 271 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G TG GK +AR I Q R + V+VNCA+L + S LFGH KGAFT A+ + Sbjct: 272 GETGTGKELVARAIHAASQRRDR---PMVKVNCASLPANLIESELFGHEKGAFTSAQVRQ 328 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G A+ LFLDEIGEL + QA LL+ ++E F GS R + D +++A T RDL Sbjct: 329 IGRFEFADRNTLFLDEIGELPLESQAKLLRVLQEGEFERLGSSRTLKVDVRIVAATNRDL 388 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEAR 394 + V +G+FR+DL+ R+N++ T+P LR+R EDI ++ V + G S+R Sbjct: 389 EEEVRKGRFRQDLWYRLNIFPITVPPLRERTEDIPLLINLFVNKFGRKLGKSIRRIPAGV 448 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA 454 + W GN REL + R A + + D + + + P Sbjct: 449 -----MKSLQAYDWPGNVRELENVIERAAINTVGPSLQ---LLDNLKSSLVTEKTAAPRL 500 Query: 455 LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLS---AAGRQLFDVSRQGKASVNDADRL 511 + + H++ + + ++ L Sbjct: 501 -------------TLEEAERSHILQVLADTNGRIEGPKGAALILGIN---------HSTL 538 Query: 512 RKYLARFGLTWEAVQD 527 R + + G+ + D Sbjct: 539 RARMRKLGIHIRRISD 554 >UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA Length = 560 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 201/468 (42%), Gaps = 48/468 (10%) Query: 72 VVSVEIELHNPWDFEEVYACLHDFARGYEFQPEKEDYLIHITT-GTHVAQICWFLLAEAR 130 V ELH D ++ YA DF F+ E +H++ G CW LL A Sbjct: 112 VQVEVNELHLSHDLKQFYA---DFNWLNSFEAE-----VHLSEFGASDQPACWMLLGYAC 163 Query: 131 YLPARLIQSSPPRKKEQ--PRGPGEVTIIDLDLSRYN-------------------AIAS 169 + ++ + ++ +G II LS + A+ + Sbjct: 164 GYSSFVMGQTIIYQETHCVAQGDEHCRIIGKPLSEWENADELIRFMSPDAVSDEIIALQA 223 Query: 170 RFAEER-----QQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFL 224 + + + D+ + + ++ + ++K A S+ +LL G TG GK Sbjct: 224 ELNQLKKNIYTEAESDYTMFNAVGESVAYRKVCDLLKKAAG-SKVAVLLQGETGVGKEAF 282 Query: 225 ARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGG 284 AR I Q + Q FV VNCA + D S LFG KGAFTGA +SR G A+GG Sbjct: 283 ARGIHNGSQRQAQ---PFVAVNCACIPPDLIESELFGVEKGAFTGAVQSRMGKFERAHGG 339 Query: 285 MLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFR 344 +FLDE+ EL QA LL+ ++E F G R D +L+A T DL Q V +GKFR Sbjct: 340 TIFLDEVVELSPRAQAALLRMLQEGEFERVGDSRTRQVDVRLVAATNEDLEQAVKDGKFR 399 Query: 345 EDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSP 404 DLY R+N++ +P LR+R+EDI +++ + R ++ +++ ++ + ++ Sbjct: 400 ADLYYRLNIFPVIIPPLRERREDIPLLINHFLARFENMYNKTLKGLSDKAKNFM-----M 454 Query: 405 QATWRGNFRELSASVTRMATFATS-GRITLDVVEDEINRLRYNWQESRPSALTALLGAEA 463 + W GN REL + R I LD + + L + ++ L +E Sbjct: 455 KYDWPGNIRELENLLERATLLTDHQQEIKLDSLFPQHKDLEAVGETAQSLINVEDLFSEN 514 Query: 464 ENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADRL 511 D+++ + + +++ + ++ +SR L Sbjct: 515 F---SLDQLEQNIIRSAMDKSQQNVSEAARMLGISRATLDYRLKKITL 559 >UniRef50_B3E653 PAS modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3E653_GEOLS Length = 463 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 94/370 (25%), Positives = 162/370 (43%), Gaps = 26/370 (7%) Query: 155 TIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLN 214 +I D++ + +Q+ G + + + + I VA + +L+ Sbjct: 107 LLISRDVTERQQLQHENQSLKQRMACGSFGGFVSISSSMLPVFQTIGAVAGL-ESTVLIT 165 Query: 215 GPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESR 274 G +G GK +A I + V VNCA L S LFG+ +GAFTGA + Sbjct: 166 GESGTGKELVAAAIHRNSARNERA---MVTVNCAALPEHLVESELFGYQRGAFTGAVGNH 222 Query: 275 EGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL 334 G A+ +FLDE+G+L A+ QA LL+ ++E+T GS++ + D ++IA T R+L Sbjct: 223 RGKFEQADKSTIFLDEVGDLPANAQAKLLRVLQERTVSRLGSEKDIRVDVRIIAATNRNL 282 Query: 335 RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEAR 394 +Q+VA+G FREDLY R+N+ + +P LR+R+EDI P ++ ++R + EA Sbjct: 283 QQMVADGLFREDLYYRLNVISLPVPPLRERREDILPMAEFFLKRFSERMERPQLGICEAT 342 Query: 395 RAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA 454 R+ + GN REL + R I+ + ++ R + Sbjct: 343 RS-----VLLSYDYPGNVRELEHGIERAVALCPGSCISPADLPEQFVAARSSGGPDWQHP 397 Query: 455 LT--------ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVN 506 L+ A A + + + ++ + A +L ++SR+ Sbjct: 398 LSVRAGDQYRPDDAAPATLANAREESERRLILDALVRTGGRKAEAAKLLNISRK------ 451 Query: 507 DADRLRKYLA 516 L + L Sbjct: 452 ---TLWEKLK 458 >UniRef50_A8ZYR3 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Deltaproteobacteria RepID=A8ZYR3_DESOH Length = 485 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 99/493 (20%), Positives = 172/493 (34%), Gaps = 39/493 (7%) Query: 46 LLHDARSRSLFETLKRDIASVSPETEVVSVEIELHNPWDFEEVYACLHDFARGYEFQPEK 105 +L L ++ + + ++ E V D P Sbjct: 4 ILIVDDDDQLRQSFAKLLKEEGYSVDMAP-----SGEAGLEAVRDKAFDLVVLDVQMPGM 58 Query: 106 EDYLI--HITTGTHVAQICWFLLAEARYLPARLIQSSPPRKKEQPRGPGEVTIIDLDLSR 163 I + + +P V + Sbjct: 59 SGLEAFARIREIDATLPVVVMTAYGTTETAIEATKLGAFDYILKPFDIAGVLDLITQALE 118 Query: 164 YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSF 223 + E I +P + + I +VA ++ A +L+ G +G GK Sbjct: 119 AGHMMRARVEMNVAPDSARPGAIIGSSPPMQEVYKAIGRVA-QTDATVLIRGESGTGKEL 177 Query: 224 LARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANG 283 +AR I + + F+ +NC L S LFG+ KGAFTGA R G + ANG Sbjct: 178 VARAIYQHSKR---AGKPFLVINCVALPETLLESELFGYEKGAFTGAASRRIGKIEQANG 234 Query: 284 GMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKF 343 G +FLDEIG++ QA +L+ ++E++ P G + + D +++A T R+L + + F Sbjct: 235 GTVFLDEIGDMPLSIQAKILRLLQERSLEPLGGNASIDVDVRILAATNRNLEKAIENEVF 294 Query: 344 REDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGD-SVRFNTEARRAWLAFAT 402 REDLY R+ + T LP LR R D+ DY + + + EAR+ Sbjct: 295 REDLYYRLKVVTVNLPPLRDRVNDVNLLADYFMTLFSKEMKMDNPGLTDEARKMIRH--- 351 Query: 403 SPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSA-------- 454 W GN REL+ ++ + F+ + + + I + Sbjct: 352 ---HPWPGNVRELANALKKSLIFSRGYPVRPEDISQVIAGPDQAGPSVTDGSDMDRVVGE 408 Query: 455 ----LTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 + G A L DR+ + + + + +L ++R Sbjct: 409 WAREMLTAGGDTARFDYLTDRLTAIIIREALQMTRGNRSQAAKLLGLARP---------T 459 Query: 511 LRKYLARFGLTWE 523 L + + L+ E Sbjct: 460 LLSKIDKLNLSIE 472 >UniRef50_C0A2X1 Response regulator receiver protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A2X1_9BACT Length = 519 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 102/557 (18%), Positives = 190/557 (34%), Gaps = 101/557 (18%) Query: 25 SKWRPTLCLCQQESLVIDRLELLHDARSRSLFETLKRD----IASVSPETEVVSVEIELH 80 P + + ++ V L + ++S + E + + P +VV +++ + Sbjct: 3 DSKPPVILVIDDDAEVRYSLSRVLSSKSYQVVEAASGEEGVGLVKKGPAPDVVFLDVRMG 62 Query: 81 NPWDFEEVYACLHDFARGYEFQPEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSS 140 E + HI + + ++ Sbjct: 63 GMSGLEALQ---------------------HIRSVNPRQLVILMTAFGTAQTAIEAMKFG 101 Query: 141 PPRKKEQPRGPGEVTIIDLDLSR-YNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQ 199 +P P +V + + + ++ + + + +D + GI +P + + Sbjct: 102 AFDYIMKPFDPAKVLALAENALKAHHDMRAAGEYKPTINVDDYREGIVGASPVMQDVFKI 161 Query: 200 IEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTL 259 + +V S +++ G +G GK +AR I + H+ + +F+ VNCA + + S L Sbjct: 162 VGQV-TASDVTVMITGESGTGKELVARSIWKHS---HRAAKSFIAVNCAAIPDNLIESEL 217 Query: 260 FGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQ 319 FGH KG+FTGA R G + G +FLDEIG++ Q +L+ +++ G Sbjct: 218 FGHEKGSFTGATGQRIGKFELCDRGTIFLDEIGDMALATQTKILRVLQQGEIQRVGGTDT 277 Query: 320 VSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERH 379 + D ++IA T +DL +V FREDLY R+N+ +P LR+R DI +D+ ++ Sbjct: 278 IKVDVRIIAATNKDLEAMVKAKTFREDLYYRLNVVRIKMPPLRERTGDIPQIVDFCLQNL 337 Query: 380 ASLTGDSV-RFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVED 438 V + + EA + W GN REL V R A A I + Sbjct: 338 VKQKKARVGKVSPEAMNIL------ARHDWPGNVRELENVVYRSAVIAQGDMILPKDLPV 391 Query: 439 EINRLRYNWQESRPSALTALLGAEAENIDLFD---------------------------- 470 EI + + + + + Sbjct: 392 EIRDAVPPLATAVSTTTPSPPPPPNIERSMLNVQRSVFDGEAASPATIAAPSPPPPPSTT 451 Query: 471 ------------------RMQLEHVIAICRQ---------AKSLSAAGRQLFDVSRQGKA 503 +E ++ + A L ++R Sbjct: 452 ATPTLESALDFLHHELTITADIEPILKRLEREMIARVYRATDGNIAKSADLLGITRP--- 508 Query: 504 SVNDADRLRKYLARFGL 520 L+K L L Sbjct: 509 ------TLKKRLEELAL 519 >UniRef50_A5F6B9 Flagellar regulatory protein A n=61 Tax=Gammaproteobacteria RepID=A5F6B9_VIBC3 Length = 488 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 102/439 (23%), Positives = 175/439 (39%), Gaps = 61/439 (13%) Query: 126 LAEARYLPARLIQSSPPRKKEQPRGPGEVT------IIDLDLSRYNAIASR--FAEERQQ 177 L +A ++P + P +E P GE+ + L R F Sbjct: 69 LTKANHIPLLVANKQPYSLEEFPNYVGELDFPLNYPQLSDALRHCKEFLGRKGFQVLATA 128 Query: 178 TLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTGAGKSFLARRILELKQARHQ 237 + L + ++ + IE+V+ + A +L+ G +G GK +AR I R+ Sbjct: 129 RKNTLFRSLVGQSMGIQEVRHLIEQVST-TEANVLILGESGTGKEVVARNIHYHSGRRN- 186 Query: 238 FSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREGLLRSANGGMLFLDEIGELGAD 297 G FV +NC + + S LFGH KGAFTGA +R+G A GG LFLDEIG++ Sbjct: 187 --GPFVPINCGAIPAELLESELFGHEKGAFTGAITARKGRFELAEGGTLFLDEIGDMPMS 244 Query: 298 EQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFT 357 Q LL+ ++E+ F G + + ++ ++IA T R+L +++ KFREDLY R+N++ Sbjct: 245 MQVKLLRVLQERCFERVGGNSTIKANVRVIAATHRNLEEMIDGQKFREDLYYRLNVFPIE 304 Query: 358 LPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSA 417 +P LR R +DI L + R + + F A + + + W GN REL+ Sbjct: 305 MPALRDRIDDIPLLLQELMTRMEAEGAQPICFTPRAINSMM------EHDWPGNVRELAN 358 Query: 418 SVTRMATFATSGRITLDVVEDEINRLRYNWQESRPS------------------------ 453 V RM + + ++ + + + PS Sbjct: 359 LVERMVILYPNSLVDVNHLPTKYRYSDIPEFQPEPSRFSSVEEQERDVLEGIFAEDFNFE 418 Query: 454 ----------ALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKA 503 A AL +L +++ + + A + + R Sbjct: 419 EPQEFVPDIDAPQALPPEGVNLKELLADLEVNLINQALEAQGGVVARAADMLGMRR---- 474 Query: 504 SVNDADRLRKYLARFGLTW 522 L + + ++ + Sbjct: 475 -----TTLVEKMRKYNMQR 488 >UniRef50_A4CKT3 Transcriptional regulator, NifA subfamily, Fis Family protein n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CKT3_9FLAO Length = 791 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 100/370 (27%), Positives = 163/370 (44%), Gaps = 36/370 (9%) Query: 157 IDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGP 216 +LD R + L F + + ++++ ++E+VA + A +LL G Sbjct: 454 KELDTLRNRLEQENMYLRNELDLAFNYQEMVYSSQAISQVLTEVEQVAA-TNATVLLQGE 512 Query: 217 TGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG 276 +G GK LAR I + ++VNCA + G+ S LFGH KGAFTGA ++ G Sbjct: 513 SGTGKELLARAIHNISPRS---GKPMIKVNCAAIPGELLESELFGHKKGAFTGAVSNKVG 569 Query: 277 LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDLRQ 336 A+GG LFLDEIGEL + Q LL+ ++E G D ++IA T R L++ Sbjct: 570 KFELADGGTLFLDEIGELPLEMQPKLLRFLQEGEIEVVGGTEVRKLDVRIIAATNRYLKE 629 Query: 337 LVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSVRFNTEARRA 396 V +G FREDLY RIN++ +P LR+R+EDI +++ +++ G ++ F TE Sbjct: 630 EVEKGDFREDLYFRINVFPIEVPPLRERKEDIPILVEHFMDKFNRKYGKNISFVTE---- 685 Query: 397 WLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQESRPSALT 456 A + Q W GN REL + R + + + E + + + + + S Sbjct: 686 -EAMSQLKQYEWPGNIRELENLLERATIVSRGETLIIPGFESQSQKSKMPLRNNNLS--- 741 Query: 457 ALLGAEAENIDLFDRMQLEHVIAICRQAKSLSA---AGRQLFDVSRQGKASVNDADRLRK 513 +Q H++ + +L D+ LR Sbjct: 742 ------------LTTVQRNHILHVLDMCDWKITGQGGAAELLDM---------RPSTLRD 780 Query: 514 YLARFGLTWE 523 + + G+ Sbjct: 781 RMQKLGIERP 790 >UniRef50_B0VES5 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES5_9BACT Length = 1454 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 163/374 (43%), Gaps = 27/374 (7%) Query: 153 EVTIIDLDLSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPIL 212 ++ +I ++ N S Q + + + S I ++P ++ E IEKV + +L Sbjct: 1105 QIIVIIENILSANLEKSHNIIREQLSSNNIYSNIIGKSPEMMKIFEIIEKV-KDTPTTVL 1163 Query: 213 LNGPTGAGKSFLARRILELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARE 272 L GP+G GK +AR + R++ FV C L S LFGHVKG+FTGA Sbjct: 1164 LEGPSGTGKELIARALHYSSNRRNKA---FVAQYCGALPETLLESELFGHVKGSFTGAAY 1220 Query: 273 SREGLLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVR 332 ++GL A+GG FLDEI ++ Q+ LL+ ++E G+ + D +++ T Sbjct: 1221 DKKGLFEIADGGTFFLDEISDISQSTQSKLLRFLQEGEIKRVGATKTEKVDVRVVCATNT 1280 Query: 333 DLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHASLTGDSV-RFNT 391 L + V G+FR DLY R+N+ +P L+ R DI + ++++ +V F Sbjct: 1281 PLMERVKSGEFRLDLYYRLNVIRIDVPPLKNRTGDIPLLAIHFLDKYNKRMNKNVMGFTA 1340 Query: 392 EARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGR-ITLDVVEDEINRLRYNWQES 450 EA + Q W GN R+L + R T A I +E+ R + Sbjct: 1341 EAMKVL------EQYDWPGNVRQLENEIERAVTLAEPNTFIKPSDFSEEVYRHIEYSKT- 1393 Query: 451 RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDADR 510 A+L + D + ++ + + + + + +SRQG Sbjct: 1394 -----IAMLSGKKNLKDAIEELERKLISQSLEKFQWNQTQAAKELGLSRQG--------- 1439 Query: 511 LRKYLARFGLTWEA 524 L K + R+ L E Sbjct: 1440 LIKKMQRYNLYREE 1453 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.162 0.569 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,555,368,831 Number of Sequences: 3077464 Number of extensions: 211596783 Number of successful extensions: 582349 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 6623 Number of HSP's successfully gapped in prelim test: 861 Number of HSP's that attempted gapping in prelim test: 552213 Number of HSP's gapped (non-prelim): 9219 length of query: 532 length of database: 1,040,396,356 effective HSP length: 134 effective length of query: 398 effective length of database: 628,016,180 effective search space: 249950439640 effective search space used: 249950439640 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 96 (41.3 bits)