BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (639 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P45512 Glycerol metabolism operon regulatory protein n=... 960 0.0 UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax... 487 e-136 UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory p... 436 e-120 UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulato... 431 e-119 UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibri... 400 e-110 UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional r... 386 e-105 UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escheri... 353 9e-96 UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional r... 330 1e-88 UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol me... 306 2e-81 UniRef50_Q32H06 Putative uncharacterized protein n=1 Tax=Shigell... 293 2e-77 UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis ... 274 7e-72 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 262 3e-68 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 251 8e-65 UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clo... 250 1e-64 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 244 8e-63 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 244 8e-63 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 242 3e-62 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 236 1e-60 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 230 1e-58 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 229 3e-58 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 228 7e-58 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 226 2e-57 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 223 2e-56 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 219 2e-55 UniRef50_B1ELL2 PTS-dependent dihydroxyacetone kinase operon reg... 214 6e-54 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 214 7e-54 UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Ta... 214 1e-53 UniRef50_P26047 Signal-transduction and transcriptional-control ... 213 2e-53 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 209 4e-52 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 208 6e-52 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 206 3e-51 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 202 4e-50 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 202 5e-50 UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional r... 201 6e-50 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 201 1e-49 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 200 2e-49 UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4... 198 6e-49 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 197 1e-48 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 197 1e-48 UniRef50_A5N2U4 Predicted signal transduction and transcriptiona... 196 2e-48 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 196 2e-48 UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional r... 196 3e-48 UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional r... 192 3e-47 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 191 6e-47 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 189 2e-46 UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional r... 189 3e-46 UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n... 188 5e-46 UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID... 188 5e-46 UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional r... 188 5e-46 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 188 6e-46 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 188 6e-46 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 187 1e-45 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 187 1e-45 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 185 5e-45 UniRef50_Q6AR13 Related to sigma54-dependent transcriptional reg... 185 5e-45 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 185 5e-45 UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis ... 184 9e-45 UniRef50_O31551 Acetoin dehydrogenase operon transcriptional act... 184 1e-44 UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 T... 183 2e-44 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 183 2e-44 UniRef50_D0BR12 Nitrogen regulation protein NR(I) n=2 Tax=Fusoba... 182 3e-44 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 182 3e-44 UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional r... 182 3e-44 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 182 4e-44 UniRef50_C5CJI8 Sigma54 specific transcriptional regulator, Fis ... 181 6e-44 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 181 6e-44 UniRef50_Q08XY4 Sigma-54 dependent transcriptional regulator n=3... 181 1e-43 UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR... 180 1e-43 UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional r... 180 1e-43 UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional r... 180 1e-43 UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional r... 180 2e-43 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 180 2e-43 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 179 3e-43 UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis ... 179 4e-43 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 179 4e-43 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 178 5e-43 UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional r... 178 5e-43 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 178 5e-43 UniRef50_Q5VJD9 Sigma 54-dependent transcriptional factor n=1 Ta... 177 9e-43 UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional... 177 9e-43 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 177 1e-42 UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-... 177 2e-42 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 176 2e-42 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 176 2e-42 UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional r... 176 2e-42 UniRef50_A6TUL7 Sigma54 specific transcriptional regulator, Fis ... 176 2e-42 UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional... 176 2e-42 UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=B... 176 3e-42 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 176 3e-42 UniRef50_D1U4X2 PAS modulated sigma54 specific transcriptional r... 176 3e-42 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 176 4e-42 UniRef50_D2L030 PAS modulated sigma54 specific transcriptional r... 175 4e-42 UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillu... 175 4e-42 UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1... 174 8e-42 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 174 8e-42 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 174 1e-41 UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2... 174 1e-41 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 174 1e-41 UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 T... 173 2e-41 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 173 2e-41 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 173 2e-41 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 173 2e-41 UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular orga... 172 3e-41 UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional r... 172 3e-41 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 172 4e-41 UniRef50_B2A7L9 Putative sigma54 specific transcriptional regula... 172 4e-41 UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaeta... 172 5e-41 UniRef50_A6TVV5 Sigma54 specific transcriptional regulator, Fis ... 171 6e-41 UniRef50_A6G018 Two component, sigma54 specific, transcriptional... 171 6e-41 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 171 7e-41 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 171 1e-40 UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing pr... 171 1e-40 UniRef50_A5CZF6 Transcriptional regulator n=1 Tax=Pelotomaculum ... 171 1e-40 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 171 1e-40 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 171 1e-40 UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD 170 1e-40 UniRef50_A1HLS8 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 170 2e-40 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 169 2e-40 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 169 2e-40 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 169 2e-40 UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfi... 169 2e-40 UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with ... 169 3e-40 UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulato... 169 3e-40 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 169 3e-40 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 169 3e-40 UniRef50_B2JQ58 PAS modulated sigma54 specific transcriptional r... 169 3e-40 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 169 4e-40 UniRef50_C6NYI4 Two component, sigma54 specific, transcriptional... 169 4e-40 UniRef50_B0S8N1 Response regulator of a two component response r... 169 4e-40 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 169 4e-40 UniRef50_Q086E2 Two component, sigma54 specific, transcriptional... 168 5e-40 UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas Re... 168 5e-40 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 168 5e-40 UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-bind... 168 5e-40 UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovib... 168 5e-40 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 168 6e-40 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 168 6e-40 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 168 6e-40 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 168 6e-40 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 168 7e-40 UniRef50_Q24RU7 Putative uncharacterized protein n=2 Tax=Desulfi... 167 1e-39 UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4... 167 1e-39 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 167 1e-39 UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwards... 166 2e-39 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 166 2e-39 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 166 2e-39 UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio b... 166 2e-39 UniRef50_A0R926 Sensory box sigma-54 dependent DNA-binding respo... 166 2e-39 UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevi... 166 3e-39 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 166 3e-39 UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltap... 166 3e-39 UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Brady... 166 3e-39 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 166 4e-39 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 166 4e-39 UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulato... 165 4e-39 UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC ... 165 4e-39 UniRef50_Q181W8 Putative sigma-54 interacting regulatory protein... 165 5e-39 UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis ... 165 5e-39 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 165 5e-39 UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional r... 165 5e-39 UniRef50_B2A7R2 Putative sigma54 specific transcriptional regula... 165 6e-39 UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory... 164 7e-39 UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhod... 164 8e-39 UniRef50_UPI0001C430E3 transcriptional activator of arginine uti... 164 8e-39 UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis ... 164 9e-39 UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus claus... 164 9e-39 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 164 9e-39 UniRef50_C4XUF1 Fis family transcriptional regulator n=2 Tax=Des... 164 1e-38 UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional... 164 1e-38 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 164 1e-38 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 164 1e-38 UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis ... 164 1e-38 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 164 1e-38 UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostri... 164 1e-38 UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA 164 1e-38 UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis F... 164 1e-38 UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulato... 163 2e-38 UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator ... 163 2e-38 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 163 2e-38 UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2... 163 2e-38 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 163 2e-38 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 163 2e-38 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 163 2e-38 UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with ... 162 3e-38 UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transc... 162 3e-38 UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum... 162 3e-38 UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator... 162 3e-38 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 162 3e-38 UniRef50_C0ZD73 Putative transcriptional regulator n=1 Tax=Brevi... 162 3e-38 UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DS... 162 3e-38 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 162 4e-38 UniRef50_Q24UK7 Putative uncharacterized protein n=2 Tax=Desulfi... 162 4e-38 UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-ty... 162 4e-38 UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostri... 162 4e-38 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 162 5e-38 UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional... 162 5e-38 UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis ... 161 6e-38 UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and A... 161 6e-38 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 161 6e-38 UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis ... 161 6e-38 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 161 6e-38 UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus ... 161 6e-38 UniRef50_B8DFD9 Sigma-54 dependent transcriptional regulator n=1... 161 7e-38 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 161 7e-38 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 161 7e-38 UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis ... 161 7e-38 UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 T... 161 8e-38 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 161 9e-38 UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC ... 161 9e-38 UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-ty... 161 9e-38 UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfov... 160 1e-37 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 160 1e-37 UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteob... 160 1e-37 UniRef50_A9A0C3 Sigma54 specific transcriptional regulator, Fis ... 160 1e-37 UniRef50_A8MEE7 Putative sigma54 specific transcriptional regula... 160 1e-37 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 160 1e-37 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 160 1e-37 UniRef50_B8FDA2 PAS modulated sigma54 specific transcriptional r... 160 1e-37 UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovib... 160 1e-37 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 160 1e-37 UniRef50_C0QL73 Sigma-54 dependent two component DNA-binding res... 160 2e-37 UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2... 160 2e-37 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 160 2e-37 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 160 2e-37 UniRef50_A9BIG7 PAS modulated sigma54 specific transcriptional r... 160 2e-37 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 160 2e-37 UniRef50_P38022 Arginine utilization regulatory protein rocR n=8... 160 2e-37 UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax... 159 2e-37 UniRef50_A8MHR4 Putative sigma54 specific transcriptional regula... 159 2e-37 UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7... 159 2e-37 UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional re... 159 3e-37 UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis ... 159 3e-37 UniRef50_A6GKI8 Sigma-54 dependent transcriptional regulator, Fi... 159 3e-37 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 159 3e-37 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 159 3e-37 UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 T... 159 3e-37 UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional... 159 3e-37 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 159 4e-37 UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Ga... 159 4e-37 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 159 4e-37 UniRef50_Q315F1 Putative transcriptional regulator, Fis family n... 159 4e-37 UniRef50_B4CU93 Two component, sigma54 specific, transcriptional... 159 4e-37 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 159 4e-37 UniRef50_C6C1Z7 Two component, sigma54 specific, transcriptional... 159 4e-37 UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1... 159 5e-37 UniRef50_C6BSU4 PAS modulated sigma54 specific transcriptional r... 159 5e-37 UniRef50_C6PWR5 Putative sigma54 specific transcriptional regula... 159 5e-37 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 158 5e-37 UniRef50_A8MEG8 Putative sigma54 specific transcriptional regula... 158 5e-37 UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional... 158 5e-37 >UniRef50_P45512 Glycerol metabolism operon regulatory protein n=68 Tax=Enterobacteriaceae RepID=DHAR_CITFR Length = 641 Score = 960 bits (2481), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/630 (72%), Positives = 535/630 (84%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G+ +S +IA SW RC+K M+RETW PHQAQG+TF SI RRK A+LT+ QAALEDAWE+M Sbjct: 9 GKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAALEDAWEFM 68 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 R CAL ILDE+ACILSR GDPQT++QL+ LGF DG+YCAE IIG+CALSLA + GQ Sbjct: 69 DGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSLATMPGQPT 128 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 KT DQHFKQ L W+FC+TP+FD+ GRL G+I+L C VE +DL LTLAIAREVGN Sbjct: 129 KTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHECVSDLSLTLAIAREVGNS 188 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 LLTDSLLAE+NRHLNQ+ LLESMDDGV++W+EQG LQF+NA+AA +L LDA ASQG+ I Sbjct: 189 LLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDAQASQGKNI 248 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 +LL LP +L++AIK A L HVE TFESQHQF+DAVITLKPI+E QG SFILLLHPVEQ Sbjct: 249 NDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFILLLHPVEQ 308 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 MRQLMTSQLGKVSHTF M DDP+TRRLIHFGRQAAR SFP+LLCGEEGVGK LLSQAI Sbjct: 309 MRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVGKELLSQAI 368 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYL 428 HNESERA+GPYIAVNC+LY ++ L ++F+G TD+ENGRLSRLELA+GGTLFLEKIEYL Sbjct: 369 HNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTLFLEKIEYL 428 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 A ELQSALLQVIKQGV+TRLDARRLIP+DVKVIATTT DLA LVEQNRFSRQLYYALH+F Sbjct: 429 APELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSF 488 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 EI IPPLR RR SIP+L+ +L SL+KRFS+ LKIDDDALA+LV+ +WPGNDFEL S+IE Sbjct: 489 EIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGNDFELNSIIE 548 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 N+A+SSDNG IR+S+LP++LF E+ + +++ L SL+F +EKEAII+AA+VT GR+Q Sbjct: 549 NIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAARVTSGRVQ 608 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 EMS LL IGRTTLWRKMKQ+ IDA QFKR+ Sbjct: 609 EMSQLLNIGRTTLWRKMKQYDIDASQFKRK 638 >UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax=Aeromonas RepID=A4SSX2_AERS4 Length = 633 Score = 487 bits (1254), Expect = e-136, Method: Compositional matrix adjust. Identities = 264/627 (42%), Positives = 386/627 (61%), Gaps = 17/627 (2%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECAL 75 + SW RC W+ PH A+G T S+ +RK+ +LT G+ ALED +E+M R CAL Sbjct: 15 LQASWLRCAHQTSATLWHPPHSAKGQTLQSLRQRKRDLLTTGEMALEDLYEFMERRPCAL 74 Query: 76 FILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQH 135 + DE+ C+L+R G P TL +L+ALGF G + +EG IGT A++LAA+ G + QH Sbjct: 75 LLTDESGCVLARTGHPGTLAELAALGFGPGAFFSEGRIGTNAINLAALEGVPLCVSGPQH 134 Query: 136 FKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLL 195 F Q L W CA+P+++S GR IAL C VE+ +A DL LT++ RE+ +LL ++L+ Sbjct: 135 FNQTLHPWHSCASPVYNSNGRQVAIIALICKVEEASAGDLALTVSAGRELAHLLQMETLM 194 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 E+ HL++L ALL+ MDDGV++WD QG L+++N AA LRLD G+ + + L LP Sbjct: 195 QESQHHLSELYALLDGMDDGVLAWDPQGRLRYLNGLAASRLRLDPALCLGQPLEQHLLLP 254 Query: 256 AVLQQAIKQAHPLKHVEATFE----SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 LQ AIK PL HVE T E + +FI+A+I+LKP+ +G SFI LLHPV+++R Sbjct: 255 QRLQLAIKGQTPLSHVEVTLERLGAQEGEFINALISLKPLPGPEGVSFIALLHPVDRLRA 314 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + L + + + + R+L+ + RQAA+S+ P+LL GE+ VGKA L++AIH Sbjct: 315 I--HHLRQTVPELSALVGESSAMRKLLRYARQAAQSTGPILLRGEDEVGKAQLAEAIHFG 372 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVE 431 SE+AAGP I +NC+ +A E +G D E R + ELAHGGTL LE++E L+ Sbjct: 373 SEQAAGPLITLNCQALPSERMALELMGSDEAGQE--RAGKFELAHGGTLVLEQVECLSAP 430 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q+ALLQ++K G I R D+ R++P+ V++IAT++A L LV++ F RQL YAL A E+ Sbjct: 431 MQAALLQLLKTGRIQRFDSARILPLKVRIIATSSAPLEQLVQEGLFGRQLLYALQACELW 490 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLA 551 +P LR R +P L++ +L + + R R + AL L++ WPGN EL S +E+ Sbjct: 491 LPGLRERAADLPGLISQQLGA-QGREPVR-QFSPAALDCLLAYPWPGNLGELRSAVEHAL 548 Query: 552 LSSDNGRIRVSDLP---EHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 L + GRI LP H + A + V L+ AE+E++AI+ A G++ Sbjct: 549 LHAGQGRIPPEALPAAIRHGYQLVANEVVG----QPLLTLAELERQAILRCAHACKGQVS 604 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQF 635 +M+ LGI RTTLWR++K GID + Sbjct: 605 QMAQHLGISRTTLWRRLKLLGIDPADY 631 >UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGM0_9GAMM Length = 647 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 233/632 (36%), Positives = 366/632 (57%), Gaps = 14/632 (2%) Query: 5 FNNDGRGISP-----LIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQA 59 F R +SP I SW+RC + W+ P+ A G T S R ++ + + Sbjct: 18 FFQKHRWVSPEFTHSPIHDSWDRCIRQCSAYEWHKPNVASGNTLRSFVHRNNEIVAISET 77 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 LEDA+ + P++CALF+ D T C L+ G ++++Q LGF G + EG +GT A+S Sbjct: 78 VLEDAYRMLEPKDCALFVTDATGCSLAILGSEKSIEQAKQLGFKLGAFWTEGRVGTNAVS 137 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 L+ + Q + QHF Q L + A P+FD GRL + L +E +D L Sbjct: 138 LSLHTHQPETVFSAQHFNQNLHGYGCHAAPVFDIDGRLKACLLLFTDMENYQPSDAALIT 197 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 + A+EV +L+ ++ L+++N LNQ NA+LE MDDG+I+WD+ + +N QAA +L Sbjct: 198 SCAKEVSSLVQLENSLSDSNLILNQRNAVLECMDDGIIAWDKDLRITLMNDQAASKFKLK 257 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 G + +++ LP V++Q IK L H+E TFE Q +FI+A++TL+P+ F Sbjct: 258 KEHIIGSLLHKIIMLPPVIKQGIKNREKLSHLEITFECQGEFIEALVTLRPL---SNAGF 314 Query: 300 ILLLHPVEQMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + +HP+E +R+ + V +F + + +++ ++AA++ P+LL GE+G Sbjct: 315 LFFIHPLETIRRFAQRNIDNNVELSFDSLVTHSKKMKKVQTIAKRAAKTKNPILLRGEDG 374 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGG 418 VGK ++QA+H+ S+ + GP+I VNC++ + E +G D + G+LS+ ELA+GG Sbjct: 375 VGKNKIAQAMHHLSDNSKGPFIIVNCKVIQAENMVRELLGCDEGE---GKLSKFELANGG 431 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 T++LE++E+L+ E+QSALLQ++K + R + R+IP++ ++I +T+ADL V Q F Sbjct: 432 TIYLEQVEFLSSEVQSALLQMLKNNLFMRTSSNRMIPVNFQLITSTSADLEQYVNQGTFR 491 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 R LYYA+ A E+ IP LR R+ I LV+ +L LEKR+ T L I D+AL L+ +WPG Sbjct: 492 RHLYYAISAVELNIPSLRHRQEDIVELVHRQLLRLEKRYKTSLSITDEALQLLLHYSWPG 551 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + IE + L+ I + D P L E ++SA SL +EK+AI Sbjct: 552 NLSELQNKIEKIVLNRSGDLITIDDFPSQLLEEPIKGELSAKGYIQSLE--AIEKQAIQQ 609 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A GR+ E++ L IGRTTLWRK+K++ I Sbjct: 610 AWDHFDGRVNEIATALQIGRTTLWRKLKKYQI 641 >UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulatory protein n=2 Tax=Photobacterium profundum RepID=Q6LL49_PHOPR Length = 651 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 233/628 (37%), Positives = 365/628 (58%), Gaps = 7/628 (1%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 I P + W RC + + + W++PH+A+GVT+ASI + K + L + A+ED +EY+ Sbjct: 28 IEPHLQQVWARCRRQQRHDHWSMPHRAKGVTYASIQKSKASFLNIAIPAIEDIYEYLESE 87 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 CA I DE C L D +L ALG +G Y EGI+G A+S A +A +T Sbjct: 88 SCAFVISDEAGCTLYLCADSAMKVKLDALGIQEGVYWREGIMGNNAISSAMHLAKATQTA 147 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +HFK+ L +A A P+F G G +AL PVE+ + + L L + +R++ + + Sbjct: 148 GFEHFKEALHGFAVYAAPVFGDTGTALGCVALVLPVEKASVSALGLIHSASRDIASQMQA 207 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 +S+L E+N+HL++++ LLE +++GV++W G + ++N + +L L + GR I+ + Sbjct: 208 ESMLTESNQHLSEVHVLLEGVEEGVLAWYPNGKIHYLNQKGCDLLGL-TVSELGREISSI 266 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVEQM 309 LT+P + QAIKQ L V+ T ES+ + I V++LK + Q T+ +I LL+P++ + Sbjct: 267 LTMPQRVHQAIKQGVGLDMVDTTIESKGRLISLVMSLKIVKNAQNTTHCYIALLYPIKHI 326 Query: 310 RQLMTSQLGKVSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 R L+ +G + TF + R++ R AA+ PVLL GE+G+GK+ L+QAI Sbjct: 327 RDLVHQHVGNRARLTFDDIVGGSDAMLRVVRQARHAAKGRGPVLLHGEDGIGKSHLAQAI 386 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYL 428 HN S+R P+IA+NC+ +A EF+G ++++ +S+ ELA+GGTLFL+++E L Sbjct: 387 HNGSDRHGQPFIAINCQAIPKELMASEFLGS-ALESDHTSVSKFELANGGTLFLDQVECL 445 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + E+Q+ALL ++K G+I R++ ++ +DV+++AT+ DL V + F RQL L F Sbjct: 446 SSEVQAALLHLLKTGLINRMNG-NIVSVDVRIVATSNVDLDQYVVEKHFRRQLLLELQTF 504 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 +I + PLR R +P LV KL LE T L + +AL+ L+ WPGN EL +VIE Sbjct: 505 DIHVSPLRDRIEDVPILVERKLTHLEAEKKTSLTLSQEALSFLMRYRWPGNHRELRNVIE 564 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 A SD IRV DLP+ + T V L ++ S + EK II +A G++ Sbjct: 565 RSANFSDGSVIRVKDLPDIILTATEHGQVGDKALHSN-SLIDSEKMTIIRSALDCRGKVG 623 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQFK 636 M L + RTTLWRK+K H ID +K Sbjct: 624 NMCEDLKVSRTTLWRKLKNHDIDVNDYK 651 >UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibrio RepID=A7K4B9_VIBSE Length = 641 Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust. Identities = 215/616 (34%), Positives = 348/616 (56%), Gaps = 11/616 (1%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECAL 75 + SWERC K TW+ PH A G TF+S+ +R + ++ LED ++ + + L Sbjct: 29 VLESWERCIKRCSPYTWSKPHIASGFTFSSLMKRNEHLIECATTVLEDTYDMLGDEDLLL 88 Query: 76 FILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQH 135 + D CILS G Q++ ALG G + +EG IGT A++L + + A +H Sbjct: 89 MVTDGNGCILSTVGHDSMRQEMQALGIKQGCFLSEGKIGTNAVNLCINTHIPCEVFAAEH 148 Query: 136 FKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLL 195 F + L ++A A P+FD G+L GT L E DL + + A+EV + S Sbjct: 149 FNRHLHSYASVAAPVFDQFGKLRGTTCLFKKAESYKKEDLVIIASSAKEVSLQIHIQSEQ 208 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 NR NA LE MDDG+++WDE+ + +N Q+ R+L ++A+ + + +L P Sbjct: 209 ENMNRLTCAHNATLECMDDGLLAWDEESRITMVNHQSERLLNIEASQVLDKEVFSVLRFP 268 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 + +I+ + T E + +F++A+ITL+P+ GT +L LHP++++R+L Sbjct: 269 PNVLNSIESGASINRKLTTVEVRGEFVEAIITLRPL--NDGTH-LLFLHPIDKIRELAQQ 325 Query: 316 QL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 Q+ G +TF+ +P + + +I ++A +S P+L+ GEEGVGKA L+ AIHNES Sbjct: 326 QIGGSARYTFSTLPVISRKMKHVITVAKRAIKSKSPILITGEEGVGKATLAMAIHNESTY 385 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 GP+I +NC L +E +G D G S+ ELAHGGTLFLEK+EYL+ +LQ+ Sbjct: 386 KEGPFITLNCRSINTEQLVKETLGYDEG---QGMPSKFELAHGGTLFLEKVEYLSPDLQA 442 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+++K G+++R D+ RLIP+D ++I +T ++++ V Q F RQLYY + + E+ IPP Sbjct: 443 VLLKLLKTGLVSRSDSLRLIPVDFQLITSTASEISEYVTQRSFGRQLYYEISSNELHIPP 502 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 LR R+ I LV + E+R + + I+ AL L++ W GN+ EL + E + L+ Sbjct: 503 LRKRKEDIEFLVQQLISHYERRHNVTISIEPVALEALMNFRWSGNNSELRNRTERILLNR 562 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 + I+++D+PE + + + ++ E E+ AI+ A G++ +M+ L Sbjct: 563 SSNLIKLNDIPEDI----KLNSRHTAENTPVITLEEAERRAIVQAWNQCDGKMHDMAKAL 618 Query: 615 GIGRTTLWRKMKQHGI 630 IGRTTLWRK+ + G+ Sbjct: 619 QIGRTTLWRKINKFGL 634 >UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pantoea sp. At-9b RepID=C8Q755_9ENTR Length = 661 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 228/650 (35%), Positives = 363/650 (55%), Gaps = 24/650 (3%) Query: 5 FNN----DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 +NN D I P + SW RC +L++ + W A+G+TF S+ R + ML + Sbjct: 20 YNNLTSLDRPDIKPWLKESWLRCRRLLRHDHWPQQLYAKGITFESLCRNQSEMLNISSPI 79 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 +ED +EY+ +CA+F+ DET C L P +L+ LG + Y EG++G A+S Sbjct: 80 IEDIFEYLDAPDCAIFVTDETGCTLKFYATPSMAIRLTPLGIRESIYWREGMMGNNAISS 139 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA--LACPVEQTTAADLPLT 178 A + + + +HF + L + CA P+FDS L G + L E A L L Sbjct: 140 ALLLHETLSIKGYEHFNRHLHPFEICAAPVFDSDSTLMGAVGVILLTGHESAPALGLALV 199 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +I +++ L TD +LAE+N+HL++++ALL+ +++GV++WD +G + ++N + + + Sbjct: 200 HSIEQQITAKLNTDLVLAESNQHLSEVHALLDGVEEGVLAWDNKGTILYLNINGSDLFGV 259 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 + G+ I +++ LP + AI ++ E E FI I+LK + TS Sbjct: 260 KSEKILGKNIHDIIKLPQSILTAIAHNREVELFETAIEFGGAFISLAISLKIVKGPNNTS 319 Query: 299 --FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDD-------PQTRRLIHFGRQAARSSF 349 +I LLHP++++R+L+ G A + DD RR++ +QAA+ Sbjct: 320 DRYIALLHPIDRIRELVHRHSG----IGARLTFDDLDYVGTSNTIRRVVRLAQQAAKGRG 375 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRL 409 VLL GEEG+GK+ L+QAIHN SER P+I +NC+ ++ EF+GG + + + Sbjct: 376 SVLLHGEEGLGKSYLAQAIHNASERQDKPFITINCQAMPRETMSSEFLGG-IVNGDKHVI 434 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 S+ ELA GGTL LE +EYL E+Q+ALLQ++K G++++ + + L+P+DV++I TT+ D+ Sbjct: 435 SKFELAKGGTLLLENVEYLTTEVQTALLQLLKTGLLSKAN-QLLVPLDVRLITTTSVDIN 493 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 V++NRF R L Y L +F+I IPPLR R IP LV L+ + + L + +DAL Sbjct: 494 QYVDENRFRRHLLYELQSFDIHIPPLRERSEDIPPLVKRYLKIMSREVDKNLTLSEDALQ 553 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL-SF 588 L AWPGN+ EL +V+E SD IRV D+P L + D++ S L S Sbjct: 554 LLTRYAWPGNNRELRNVLERAFSYSDGAMIRVKDIPLTLL--ERVRDLATVAPSNGLHSL 611 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 ++E++A+I AA G+ +++ L I RT+LWRK+K I +K R Sbjct: 612 NDMERDALIKAAVQFQGKAIKITQALKISRTSLWRKLKAFNIHLEDYKTR 661 >UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escherichia coli RepID=Q659Z3_ECOLX Length = 649 Score = 353 bits (907), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 200/614 (32%), Positives = 334/614 (54%), Gaps = 14/614 (2%) Query: 19 SWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFIL 78 SW++C K WN+P +A G T +I+ R + + + Q +ED + A I+ Sbjct: 40 SWQKCLKHCDPRHWNMPVKASGQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLAFLII 99 Query: 79 DETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQ 138 D +LS N QL LG G AE IGT SL + + +HF + Sbjct: 100 DPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAEHFSE 159 Query: 139 VLWNWAFCATPLFDSKGRLTGTIALACPVEQTTA-ADLPLTLAIAREVGNLLLTDSLLAE 197 L +A A P+ D G + G I C +E T L + + A E+ N + ++ Sbjct: 160 QLHCYAMSAAPVIDYYGNIHGYIV--CIIETTAELVKLKTSYSCATEIANYIYIENEQKL 217 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 N+ L Q NA++E MDDG I W+ + +N+QA +L +D + G+ I + P + Sbjct: 218 INKVLCQHNAVIECMDDGFICWNSHSLITMVNSQAQTLLNIDKESLIGQNIRKGFVFPPI 277 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQL 317 L +AI Q + L + E + +FI+ ++TL+P+ SF+L LHP++++R+++ Q+ Sbjct: 278 LNEAITQRNKLSQKQIVLECRGEFIELMVTLRPL---SDGSFLLFLHPLDKIRKIVQQQI 334 Query: 318 G-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 + TF + ++++ R+A +S P+L+ GEEGVGK L+ AIHNESE+ Sbjct: 335 STNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNESEQRD 394 Query: 377 GPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 GP+I+V+C++ + E +G D + S+ ELAH GTL+L+K+EYL+ E+QS L Sbjct: 395 GPFISVDCQMLSPENILHELLGSDVGPSP----SKFELAHNGTLYLDKVEYLSGEVQSVL 450 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+K G++TR D+ RLIP+ ++I T++ L V+Q FSRQLYY + EI IPPLR Sbjct: 451 LKVLKTGLVTRSDSHRLIPVRFRLITCTSSSLREYVQQGAFSRQLYYEISMNEIEIPPLR 510 Query: 497 MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDN 556 RR + ++++ + ++R ++ I DA + L+ WPGN E + +E + ++ + Sbjct: 511 KRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNRMEKVFINCNR 570 Query: 557 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 + + ++P + ++ D L+ S AE+E +AI + +V + + + +L I Sbjct: 571 LVLGLENIPLDIRQNNSSGDDDIPHLT---SLAELEMQAIEHTCRVCEWNLTKAAEVLKI 627 Query: 617 GRTTLWRKMKQHGI 630 GRTTLWRK+K + + Sbjct: 628 GRTTLWRKLKIYNL 641 >UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NKW0_ROSCS Length = 674 Score = 330 bits (846), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 213/638 (33%), Positives = 335/638 (52%), Gaps = 18/638 (2%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAM---LTLGQAALEDAWEYM 68 + P+IA SW+RC +++ + V G++ A + R+ + + L + +ED ++++ Sbjct: 30 LDPIIAMSWQRC--ILRCNPYTVA-DLPGISEAELADRRAKLADLIALARPIMEDIYQFV 86 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + +LD +AC+L GD +Q ++LG G Y EG GT A LA V Sbjct: 87 EGSGMIIVLLDASACVLDVLGDANVQRQAASLGLRPGAYWNEGCAGTNAFGLALYERCPV 146 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 + +HF Q + A P++ +GR G + +AC A L A AR + + Sbjct: 147 HVIGAEHFFQRFHGLSVSAAPIYHWEGRPIGVLGMACLTSAGNGATLATVHAAARAIEHQ 206 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L + L E N L+A++E++ DG I D+ G + IN AA++L + A+ GRA+ Sbjct: 207 LHAEKLFNELNTQRTLLSAIVEAISDGFIVCDQAGLVVHINLCAAQILGVKREAAVGRAL 266 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-----IETQGTSFILLL 303 + LP V+ +A++Q L E +F+ Q I +I+L PI FIL L Sbjct: 267 GASVELPPVVAEAMRQCVMLTDAEVSFQVQKVQIRCLISLIPIQWQLDRVNNVEGFILTL 326 Query: 304 HPVEQMRQLMTSQLGKVSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 +EQ+ +++ +G S+ TFA + + + AARSS PVL+ GE G GK Sbjct: 327 RRLEQVHRMVQRMVGARSNFTFASIIGSSHAINQARRQAQAAARSSVPVLIVGESGTGKG 386 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEF----IGGDRTDNENGRLSRLELAHGG 418 +L++ IHNES RA GP++ VNC + + EF IG ++ G+ + ELAHGG Sbjct: 387 VLARVIHNESARAEGPFVTVNCRVLPRDLIVGEFLGYEIGAFHSNRLQGQPGKFELAHGG 446 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TL LE+IE L +++Q+ALL+V++ G + RL R+I ++V++I TT+ +L LV + F Sbjct: 447 TLHLEEIEALPLDMQTALLRVVETGEVVRLGGHRVICVNVRLIVTTSLNLERLVLRGDFR 506 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYYA+ I + PLR R +P LV + L + ++ + I DA + +WPG Sbjct: 507 ADLYYAVSRMTIRLAPLRERTADLPLLVRDILERMHRQTGRAVSISYDAQQLMRCYSWPG 566 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL +V+E A +DNG I V LP+ + + + + +L E E EAI+ Sbjct: 567 NVRELENVLERAASLADNGMIDVWHLPDAIRGRPSETEPGYDQHVPALH--EAEYEAIVR 624 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 AA+ G M+ +LGIGRTTLWRK+K + FK Sbjct: 625 AARACQGNATRMAQMLGIGRTTLWRKLKAANVSLDDFK 662 >UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7H4_VIBME Length = 629 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 198/617 (32%), Positives = 319/617 (51%), Gaps = 31/617 (5%) Query: 20 WERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILD 79 W++ ++ + + W P +G T + ++ +L Q L+ E + I + Sbjct: 31 WQQASQCCQAKAWQPPKNLRGSTLNETLQSQQNLLCFTQRVLDAITEKLRAPAWLFCITN 90 Query: 80 ETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQV 139 L G Q LS+LG G + IG A+ ++ QA + +H + Sbjct: 91 AQGITLHLQGTATISQALSSLGLCVGADWTDKRIGNHAIERCLVTHQAQLSSGAEHLSKA 150 Query: 140 LWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETN 199 L W F A P+FD G L ++ L +Q T L + ARE+ LL ++ L + N Sbjct: 151 LHPWFFSAVPIFDPMGELLASLTLIGETQQHTIMIDALMESAAREIETLLSSEQRLTQAN 210 Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ 259 L Q + LLE ++ GV++W G +Q+IN A + L LD + G I L P V++ Sbjct: 211 TLLTQRDVLLEGIEQGVVTWQASGYVQYINHCARQWLGLDESHI-GLHIEALFHFPPVVE 269 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM-----RQLMT 314 QA+ + L+ VE + Q Q + +++LKP+ + L HP E + R + Sbjct: 270 QALAERTKLEKVEVMVDCQQQLLKVILSLKPL---SSGEVMALFHPSEPLTQPHERHFIG 326 Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + + + P +R+ +AA+ S PVLL GE+GVGK L+ AIH++S++ Sbjct: 327 GDYWQPGENLW-LLEGHPCQQRI----EKAAKVSVPVLLQGEDGVGKLSLALAIHHKSQQ 381 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 P + ++C LA+ +G D++ + S+ ELA+ GTL LE IEYL LQ+ Sbjct: 382 RLAPLMIIDCAALQPEQLAQALLG----DDQQSQPSKFELAYNGTLILEHIEYLPPNLQA 437 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 +LL ++K G +TRL ++++IP++V+VI+T++ADL LVE FSRQL YA+ E+ IPP Sbjct: 438 SLLAILKTGFLTRLHSQQVIPVNVRVISTSSADLDKLVESGLFSRQLCYAMQGIEVCIPP 497 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 R +L+++ + + DAL RL+ +WPGN EL SV++ + LSS Sbjct: 498 QREALDYTRSLISHIVHRANYTLAA------DALQRLLDYSWPGNRSELLSVMDKVLLSS 551 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 + IR+ DLP+ + Q TD + S +EK AII+A + G +Q+ + L Sbjct: 552 AHHVIRLCDLPDRI--RQRTDQAQPIQ-----SLELMEKNAIIHALKHHQGHLQQTAKAL 604 Query: 615 GIGRTTLWRKMKQHGID 631 G+GRTTLWRK++++ ID Sbjct: 605 GVGRTTLWRKIRKYDID 621 >UniRef50_Q32H06 Putative uncharacterized protein n=1 Tax=Shigella dysenteriae Sd197 RepID=Q32H06_SHIDS Length = 143 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/143 (99%), Positives = 143/143 (100%) Query: 497 MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDN 556 MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDN Sbjct: 1 MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDN 60 Query: 557 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR+QEMSALLGI Sbjct: 61 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRMQEMSALLGI 120 Query: 617 GRTTLWRKMKQHGIDAGQFKRRV 639 GRTTLWRKMKQHGIDAGQFKRRV Sbjct: 121 GRTTLWRKMKQHGIDAGQFKRRV 143 >UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Chloroflexus RepID=B8GC55_CHLAD Length = 625 Score = 274 bits (701), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 195/626 (31%), Positives = 314/626 (50%), Gaps = 11/626 (1%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 P I SW RC + P Q V A+ + TL ++++ED ++ Sbjct: 7 PPIQRSWMRCQA--RGLDPATPPQTGPVNIAAW----SHLQTLARSSIEDLYQLSEHPGF 60 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 A+ I DE A I+ GD L G G E + GT A+ LA +T D Sbjct: 61 AVVICDEQATIIDVAGDSTILSLAQQSGIGYGISLLEEVAGTNAVDLALREALPYQTSGD 120 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ L ++ A P+F GR G +A+ E L + +A A+ + N L + Sbjct: 121 EHYCNWLQPFSLAAAPIFSPDGRALGALAILTRAEMQHPYALGMVIAAAQALHNQLRAER 180 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 LL E N L++L A L+S+++G+I G ++ ++ + A +L ++ ++ GR + ++ Sbjct: 181 LLNEANDQLSELYATLDSINEGLIFVGPNGEIRRLSRRVASILDINVRSAAGRPLVSVIP 240 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF--ILLLHPVEQMRQ 311 P + A+++ L E ++++ + +++P+ + ++ L P E +RQ Sbjct: 241 PPPAISTALQELTTLDEQEVIWQTRSGPQAVMCSVRPVWDRSRRYLGSVITLRPAESVRQ 300 Query: 312 LMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L+ +G + + TF + R+ + R AA PVLL GE GVGK + +QAIHN Sbjct: 301 LVQQVVGARATFTFRDIIGQSEAMRQALRQARLAAAGRGPVLLRGEGGVGKEIFAQAIHN 360 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430 S RA GP++ V C L E G + ++++ GR +LELAHGG L+LE I+ L+ Sbjct: 361 ASNRAGGPFVRVACAAIPRQLLDSELFGVESSEHQAGRPGKLELAHGGVLYLEAIDALSF 420 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 + Q+ LL+ I+ G + R +R IPIDV++I T DL LV++ RF LY L AF I Sbjct: 421 DQQTNLLRAIEMGRVIRSGGKRPIPIDVRLI-VTGHDLEQLVQEGRFRADLYARLSAFTI 479 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR R + L N+ ++ L ++ + + DALA L S WPGN EL V+E Sbjct: 480 DIPPLRRRGDDVLLLANHMVQRLSEQLGRPIALAPDALAALHSYPWPGNVRELEVVLEQT 539 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 ++ + V DLP + T A + + A E++AI+ A + GGR+ Sbjct: 540 VQTTAKSVLTVHDLPPAI-ARHTTPLAMADNPRLAEAHALSERDAIVRAVRSAGGRLSRA 598 Query: 611 SALLGIGRTTLWRKMKQHGIDAGQFK 636 + LLGI R TLWRK+ ++ I + + Sbjct: 599 ATLLGISRATLWRKITRYQISRDELR 624 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 262 bits (670), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 178/620 (28%), Positives = 316/620 (50%), Gaps = 49/620 (7%) Query: 43 FASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF 102 F + +K ++ + + E + + + DE +L G + ++ + L Sbjct: 84 FEKVIAKKADLVETASNYIHNFHEILNYSNFIMVLTDENGVVLLIEGSKKEIEAFNKLNI 143 Query: 103 NDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA 162 + E IIGT A +L + ++ + ++ +L + ATP+F+ G + GT+ Sbjct: 144 RLSSLLNEKIIGTSAHTLCIRHRKPIQFIGPYNYSMILQDNISSATPIFNDHGSVIGTLV 203 Query: 163 LA-----CPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLES----MD 213 + ++ A L +A+ + NLL L + N + +N LE+ +D Sbjct: 204 VVQMLARKDMQNIQAHSLGWVMAMGYAIENLLE----LKKQNNSMTLMNGTLEATLSLID 259 Query: 214 DGVISWDEQGNLQFINAQAARVLRLDATASQ----GRAITELLTLPA--VLQQAIKQAHP 267 DGVI+ +E + IN + +L A+ Q GR ++E + ++ ++I + Sbjct: 260 DGVITVNENCYISHINKEGINIL---ASNPQEKIIGRHLSEFVKDDQLIIINESIHKGRF 316 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQG---TSFILLLHPVEQMRQLMTSQLGK-VSHT 323 ++ E F ++ + ++ ++PI + QG + ++ L +++ +++ ++ G S Sbjct: 317 VQEYETIFMNRGRDTQYLLNIRPIADGQGKYNSGAVIRLSRSDKVNRMVANRGGTPASFK 376 Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F + + I + AR+ + VLL GE G GK L +Q+IHN S +A GP++AVN Sbjct: 377 FEDIKGKSTSLAKSIQIAQNVARTGYNVLLIGESGTGKELFAQSIHN-SYKADGPFVAVN 435 Query: 384 C----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQ 433 C EL+G F G DR NGR ++ELA+GGTLFL++I + +E+Q Sbjct: 436 CASLPRNLIESELFGYEGGT--FTGADR----NGRPGKIELANGGTLFLDEIGDMPLEIQ 489 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 LL+V+++ +TRL R IP+D +VIA T +L+++V++ F LY+ L F+ITIP Sbjct: 490 PVLLRVLEEKRVTRLGGSRGIPVDFRVIAATNKNLSLMVKEKTFREDLYFRLSIFKITIP 549 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLAL 552 PLR R + L + + K+ + + K+ + ++ +WPGN +L + + Sbjct: 550 PLRERDHDVILLAEYFIEDISKKLMSEVPKLSPASYQKIKEYSWPGNIRQLQNAMVYGVN 609 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLST-SLSFAEVEKEAIINAAQVTGGRIQEMS 611 S NG I +S+LP+ E ++D T+++T L+ AE+EKE I A TG E S Sbjct: 610 MSTNGVIELSNLPD----EMTSNDYFRTKVNTRKLTLAEIEKEVIFEALSQTGNDASEAS 665 Query: 612 ALLGIGRTTLWRKMKQHGID 631 +LGIGRTT++RK+K++GID Sbjct: 666 RILGIGRTTIYRKLKEYGID 685 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 251 bits (640), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 175/636 (27%), Positives = 311/636 (48%), Gaps = 36/636 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + P+I SW R K M P + G + ++++ +E + + Sbjct: 25 LPPMIRDSWLRSKKAMVD-----PFRPYGWIKEIDNEKYRSLIDWSLPLMEGLYSIVKGS 79 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + +E +L GD + L + +GF G +E ++GT A+ + + ++ Sbjct: 80 GFLVILCNENGQLLLSIGDREPLARAEEIGFIAGADWSEQVMGTNAIGTSIAIDRPIQVF 139 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG-NLLL 190 A++H+ ++ +W A P+ D GR+ G + ++ P E+ + L + ++ + + L L Sbjct: 140 AEEHYTKICQSWTCSAAPIHDPDGRIIGVLNMSGPYEKVHSHTLGMVVSAVKAIEYQLKL 199 Query: 191 TDSLLAETNRHLNQ-LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 ++ AE N + + L A +M +G++ D G + N Q ++ R+ + + + Sbjct: 200 HEN--AEKNVMMQRFLEATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLEEKKLD 257 Query: 250 ELLTLPAVLQQAIKQAHPLK--------HVEATFESQHQFIDAVITLKPIIET-QGTSFI 300 +L P++ HPL V+ + H +D + PI E + + Sbjct: 258 DLFNDPSICSN-----HPLHLQNQELHLSVKPSNAVHHVLVDKI----PIYEKKERIGSM 308 Query: 301 LLLHPVEQMRQLMTSQLGKVSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 +++ +E++RQ + G + TFA M P ++ R AA + VL+ GE G Sbjct: 309 IIVKEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGT 368 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELA 415 GK +++QAIHNES+R P+IA+NC L E G G T + G + ELA Sbjct: 369 GKEMVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELA 428 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 +GGTLFL++I +++E+Q LL+VI++ + R+ ++IP+DV++IA T DL V++ Sbjct: 429 NGGTLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKG 488 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL-EKRFSTRLKIDDDALARLVSC 534 F L++ L+ I +PPLR R+ IP LV + + L KR +I D L L+ Sbjct: 489 SFREDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQY 548 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 WPGN EL ++IE + + +DLPE +F + S R + +S E++K+ Sbjct: 549 DWPGNIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCS---SQVRENVDISRNEIKKQ 605 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +II A + G I + + LGI R+T +R+M + I Sbjct: 606 SIIEALKQCNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clostridium RepID=A5MZI8_CLOK5 Length = 656 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/644 (25%), Positives = 310/644 (48%), Gaps = 25/644 (3%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 FN + I P I +SW RC K + N P+ F +I KK + + + + Sbjct: 17 FNEIPKDIKPDILSSWIRCKKYGVEKDNNPPNIIPKDEFDAILDEKKEFIEICLPIMLNL 76 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 +E + ++ + DE A IL G+ + + Q L F +G E +GT A+ Sbjct: 77 YEILKNTNYSIILTDENAVILKILGNEKIMAQNRDLDFLEGRRWKEEDVGTNAIGTCIYL 136 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 + ++T+ +H+ + W A+P+ DSKG + G I L+ E TL I E Sbjct: 137 DKPIQTLGAEHYSKRQQKWTCSASPIHDSKGNIIGCIDLSGSFEDFHTH----TLGIVVE 192 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 N + +AE H S+ +G++ D L++ N +L +D Sbjct: 193 ASNTIQEQFSVAE---HRKWTEVAFNSIKEGILVIDNDFKLEYFNENICNILGIDKNQMY 249 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLL 303 + LL IK+ + + + E T +++ ++ +++ P++ + T F++L+ Sbjct: 250 KLFMKSLLKDVIKDMGDIKRLNKITYREITMYVKNRRVECNVSINPVVMNEKHTGFVILV 309 Query: 304 HPVEQMRQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + +R ++ G S + F ++ + + + +I R+ A++ VL+ GE G GK Sbjct: 310 KKADTVRTMVNKIAGFSSKYDFDNILTQNARMKGIIEDARRIAKNDCTVLITGESGTGKE 369 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGG 418 L + +IHN S+R +GP++A+NC + E G ++ ++ G + ELA+GG Sbjct: 370 LFAHSIHNGSKRCSGPFVAINCSALPKDLVESELFGYEKGSFTGASKEGNPGKFELANGG 429 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 T+FL++I L +E+Q LL+V+ ITR+ + ++V+VIA T +L V+ F Sbjct: 430 TIFLDEIGELPLEIQPKLLRVLDNHAITRIGGKYERDLNVRVIAATNRNLFKEVKLKNFR 489 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWP 537 LY+ L+ F I + P+R RR I + L L ++ ++ ID++ + + + W Sbjct: 490 SDLYFRLNVFNINLIPVRERREDIEMFIKFFLEKLAQKNKVKINNIDEEFMDVVKNYEWL 549 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE------- 590 GN E+ +V++ + S+ GRI + LP ++ + + + S+ S+ E Sbjct: 550 GNVREIENVVQRVYYLSEKGRITKALLPGYIMNYKKSSTEDDMKFSSD-SYNEFKPEIQT 608 Query: 591 ---VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 VEK+ II A + G + S L+ +G++TL+RK+K++ ++ Sbjct: 609 LDQVEKQLIIKALRYCNGNVVNASKLINMGKSTLYRKIKKYNLE 652 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 179/647 (27%), Positives = 313/647 (48%), Gaps = 45/647 (6%) Query: 10 RGISPLIATSWERC--NKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + + P I SW R N L R ++ P Q + F + ++K ++ + Sbjct: 22 KEVRPEIVESWIRSSENGLDPRH-YDYPPQMDPLMFEQLLKKKALLIQASTPFIHHLENM 80 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFN--DGTYCAEGIIGTCALSLAAISG 125 ++ EC + I DE ILS ++ L GF GT E IGTC+ + + Sbjct: 81 LSHVECYIIISDEQGVILS------VVKALGGNGFKLEAGTIWTEKTIGTCSHGMCILLK 134 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 ++ +HF + N A + P+FD G L GT+ + P ++ + L LAI+ + Sbjct: 135 SPIQLCGPEHFSHIFENIACSSAPIFDENGNLEGTLTITSPNLRSHNSQT-LGLAISMAM 193 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 G + +A N +A LE+ ++ ++ D+ G + N A +++ L G Sbjct: 194 G--IQKQFQIALQNE---IFDAALENTEEIMLFSDDDGKIIRTNMNALKIIELFGRDLIG 248 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS-FILLLH 304 + ++L + + + L H++ + + + + ++KPI S +I+LL Sbjct: 249 SQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYTKKKL-FLTSIKPIKSKDKISGYIVLLK 307 Query: 305 PVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + +++ S V TF + PQ+ +L ++ A + +L+ GE G GK + Sbjct: 308 ETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMKLKSMAKKFAHFNSNILIQGESGTGKDV 367 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGT 419 +QAIH E+ R GPYIAVNC +A E G G T E G+ ++ELA+GGT Sbjct: 368 YAQAIHFEN-RPNGPYIAVNCAAIPQNLIASELFGYEGGAFTGAERQGKPGKIELANGGT 426 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +ELQ+ LL+V++ +I + R IP+D ++I T +L LV+ N+F Sbjct: 427 LFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLITATNKNLLDLVKNNQFRE 486 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR-----LVSC 534 LYY + F++++PPLR R I L+ + +R +S+ ID+ L+ L+ Sbjct: 487 DLYYRISVFKLSVPPLRERGSDIVQLIEHFIRI----YSSNQGIDEPILSNSAKYLLLQY 542 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-----------LS 583 WPGN +L + I S+ G IR +LPE + + Q ++ + L Sbjct: 543 NWPGNVRQLQNTISYAVCMSNEGIIRPENLPEEILSYQPPSGLTLAQPEPEPSPNEIILD 602 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + S E+EK+AI+ A + I+ + +LG+ ++TL+RK+K++ I Sbjct: 603 NTPSMKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIKEYEI 649 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 244 bits (623), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 190/638 (29%), Positives = 292/638 (45%), Gaps = 38/638 (5%) Query: 14 PLIATSWERCNKL-MKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 P+I SW+RC + +T + P A G+ + R+ ++ + ++ + Sbjct: 37 PVILQSWQRCRRAGFPADTLALCPIDAAGLARSVADNRE--LVDTAKRVMDRLAHSIHLS 94 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFND-GTYCAEGIIGTCALSLAAISGQAVKT 130 + ++D T +L + T + L+++ + + G C E +GT + L + + V Sbjct: 95 SSVVTLVDTTGLVLHVSA---TREDLASVPYGEPGRRCDEATLGTNGMGLCLVERRPVHV 151 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 M +HF L + A P+ DS GR G + LA E L L A A + L Sbjct: 152 MGAEHFSSSLHYLSCSAAPIHDSTGRFLGALNLAISTENFHQHTLGLVEAAAHAIEEHLR 211 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 +L+A +LE +DDGV G + +N QA +L L GR I Sbjct: 212 LRALIASQR-------VILELLDDGVAVLGADGTIVSLNGQACSMLGLSPDVV-GRDIRS 263 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 + VL+ + E TF + ++ P + IL L +MR Sbjct: 264 FVRESEVLRAILADRQTFHDREVTFRLVQGELSCALSCAPFADG---GVILTLRETRRMR 320 Query: 311 QLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + G K +TF H+ R + R AA+ LL GE G GK L +QA+H Sbjct: 321 KYAARVAGAKAVYTFEHILGQSKALREAVRLARVAAQGDATTLLLGESGTGKELFAQAVH 380 Query: 370 NESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGT 419 N R GP++ VNC EL+G A A F G + G + ELA GGT Sbjct: 381 NAGARRKGPFVVVNCGALPRNLVQSELFGYVAGA--FSGALK----EGSPGKFELADGGT 434 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +E Q +LL+++++ +TRL + +DV++IA T DLA+ V N F Sbjct: 435 LFLDEIGEMPLEAQVSLLRLLQENEVTRLGGKEARRVDVRIIAATNKDLALAVRNNAFRG 494 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPG 538 LYY L+ I IPPLR R G +P L L L+I +ALA L + WPG Sbjct: 495 DLYYRLNVLSIAIPPLRQREGDVPLLTRLFLDKFTASLGKPELEISREALAALAAHHWPG 554 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + IE L + + RI ++DLP+ + T+ +A +S +++ I+ Sbjct: 555 NVRELENCIERLVNVACSSRIDIADLPQDVMTDMLRGRPAAPG-EAGMSLKRIQRALILE 613 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 + TGG + S LL I RTTL+ K+KQ+GI A F+ Sbjct: 614 TLRETGGNFRRASNLLNISRTTLYAKLKQYGISADTFR 651 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 170/634 (26%), Positives = 307/634 (48%), Gaps = 26/634 (4%) Query: 16 IATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 I SW+RC ++ V HQ +++ +K ++L + ++ +E++ Sbjct: 25 IRHSWQRCREMDVDPYDGVSHQLLTPGQISALLGSQKLYISLVRHFMKQLYEFVKGSGFI 84 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 +F+ + IL GDP+T + + + G E GT + A G+ V+ + Sbjct: 85 VFLANREGYILEALGDPETFKAAAQVNLIQGACWVEFAGGTNGIGTALAIGRPVQVSGCE 144 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 H+ Q L +W A PL+D G ++G + ++ P E+T L + +A A + L S+ Sbjct: 145 HYCQKLHSWTCSAAPLYDECGDISGVLQMSGPCEKTHPHTLGMVVASAEAIRKQL---SV 201 Query: 195 LAETNRHL---NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 N + QL+ L ++M DG + D G + +N A +V + + + I Sbjct: 202 WQRNNELVLANAQLSHLFQTMSDGALVIDADGRVIQVNPVARKVFGKELSGEKLNRIITA 261 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE--TQGTSFILLLHPVEQM 309 P + I H K ++ ++ + ++A++T+KP+ + + + ++ +P+ +M Sbjct: 262 ADSPDL----ISSTHSCKDLDVVLHTETEPVEALLTVKPLKDDNSDQSGAVVFFNPIRKM 317 Query: 310 RQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++L+ G + + F+ + + + I+ R+AA + VL+ GE G GK LL+QAI Sbjct: 318 KKLVNRFGGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELLAQAI 377 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEK 424 HN S R GP++AVNC +A E G G T + GR + E+A GGTL L++ Sbjct: 378 HNHSMRRNGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTLLLDE 437 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + ++ Q+ LL+V++ +TRL + R IP+DV+VI T +L V + F + LYY Sbjct: 438 IGDMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQDLYYR 497 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFEL 543 L+ I +PPLR R + L L+ + R R +D+ + L+ WPGN EL Sbjct: 498 LNVTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGNVREL 557 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQAT-----DDVSATRLSTSLS--FAEVEKEAI 596 +V+E + + + + + LP + E D V T+ + +L E E+ + Sbjct: 558 ENVVERMIHTVEEETLHCAHLPREICCETPVGRALPDSVVTTQDAATLKQVVGEQERRLL 617 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ Q G I ++ + + R T++RKM + I Sbjct: 618 VDLLQRYQGNISLIAREMAVSRNTIYRKMHHYNI 651 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 169/610 (27%), Positives = 302/610 (49%), Gaps = 43/610 (7%) Query: 51 KAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAE 110 + +LT ++ +E+ + ++ + D+ CIL GD + L L G Y E Sbjct: 43 RELLTTAKSFMEELYNFVEGSGFFAILTDQEGCILEVLGDDKVLAVSHGLEMIPGAYMDE 102 Query: 111 GIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQT 170 IGT A+ A G V+ ++HF + W A P+ +S G GT+ L E Sbjct: 103 EHIGTNAMGTALAEGIPVQISGEEHFVKAYHRWTCSAAPIRNSIGEAIGTLNLTGYSEYV 162 Query: 171 TAADLPLTLAIAREVGNLLLTDSLLAETNRHL----NQLNALLESMDDGVISWDEQGNLQ 226 + L + A A + +L + E N L + +++S+D G+ + +G ++ Sbjct: 163 HSHTLGMVAAAANAIAYMLES----KEVNNKLFLAKKSIETIVDSIDAGIFTVGPKGYMK 218 Query: 227 FINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVI 286 IN A+ +L+ G +L+ A +Q++++ EA +++ I + Sbjct: 219 TINQVASHMLQYTNDEILGMEGIKLIEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTL 278 Query: 287 TLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQ 343 + PI++ + ++ +++MR+L+ +GK + +TF + D R++++ ++ Sbjct: 279 SAYPILDESKNLQGIVCMIREIKKMRRLVNKMIGKQALYTFDKIIGRDENFIRMVNYAKK 338 Query: 344 AARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYG--DAA 391 + S VL+ GE G GK + +Q+IHN SER P++A+NC EL+G D A Sbjct: 339 ISDSPSTVLIMGESGTGKEVFAQSIHNHSERRDEPFVAINCGALPRNLIESELFGYEDGA 398 Query: 392 LAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 F G R G + ELA GGTLFL++I + +++Q+ LL+V+++G + R+ Sbjct: 399 ----FTGAKR----GGHPGKFELADGGTLFLDEIGEMPLDMQANLLRVLEEGKLFRVGGN 450 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN--K 509 + I +DV++IA T DL VE+N F LYY L+ + +PPLR R+ IP L++ Sbjct: 451 KEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNVLPLILPPLRERKSDIPLLIDYFMT 510 Query: 510 LRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 +++L+ + S + D + ++++ W GN EL +VIENL S + + +L Sbjct: 511 IKALKLKKSMTY-LPRDIMDQMINYTWRGNIRELENVIENLMNSGELNFLERVEL----- 564 Query: 570 TEQATDDVSATRLST--SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 +T + S+ R+ + S ++EK I G + + + LGIGR TL+RKM + Sbjct: 565 --SSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKYEGNVSQAAEALGIGRNTLYRKMAK 622 Query: 628 HGIDAGQFKR 637 + ID + R Sbjct: 623 YKIDCSKMTR 632 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 153/575 (26%), Positives = 272/575 (47%), Gaps = 33/575 (5%) Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 + + D CIL+ GD + L Q +L G + E IGT A+S+ S ++ Sbjct: 87 MLLTDGEGCILNAIGDEKILSQAFSLKMIPGAFMDEKNIGTNAMSMVIDSKGPIQVSGRD 146 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 HF + W A P+ DS G+L G + L +E + L + +A + + +L Sbjct: 147 HFIEAYHKWTCSAAPIKDSHGKLIGVLNLTGYIECVHSHTLGMVIAASNAIEEMLRVKEY 206 Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS-QGRAITELLT 253 N + + L S+ +I+ D G ++ N +A + ++ + + EL+ Sbjct: 207 NKIQNINNKHIKNLFNSIPVAIITSDMNGKIKVCNNKALDMFGSNSINKLKAYEMNELVE 266 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 ++ AI E + + + I + I +++ E+++++ Sbjct: 267 NWDEIRNAIYLGESFSR-EVNIRTLRNNFRCNLMVSSIYNCEEDD-IEVVYVFEEVKKIK 324 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 G+ +TF + D +++ + ++ + S +L+ GE G GK + +Q+IHN S Sbjct: 325 RKNHGQAYYTFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHNYSS 384 Query: 374 RAAGPYIAVNC----------ELYG--DAALAEEFIGGDRTDNENGRLSRLELAHGGTLF 421 R GP+IA+NC EL+G + A GG+R + ELA GGT+ Sbjct: 385 RVDGPFIALNCGAIPKQLIESELFGYEEGAFTGAKKGGNR--------GKFELADGGTIM 436 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +++Q+ LL+V+++GVIT++ + + IP+DV++IA T DL VE RF + L Sbjct: 437 LDEIGEMPLDMQTKLLRVVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDL 496 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGND 540 YY L+ + +PPLR R+G IP ++ ++++ KR + I ++ L + S WPGN Sbjct: 497 YYRLNVLPLFLPPLRERKGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNI 556 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V+E + I +P F ++V SL EKE ++ Sbjct: 557 RELENVVELI--------INTESIPSGYFQNGNCYNEVLINISEDSLKLDFAEKEHLVKV 608 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + G I + LGI R TL+ K+K++ I+ Q Sbjct: 609 LKKFKGNITRSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 229 bits (584), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 170/647 (26%), Positives = 300/647 (46%), Gaps = 39/647 (6%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASI---YR--RKKAMLTLGQAALEDA 64 R I P + +SW+R MKR P++ + YR K ++ + LE Sbjct: 55 RIIRPEVLSSWKRS---MKRGI--DPYKLHPILLTQKNLEYRLEENKELIDIASPFLEAF 109 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 + + +LD IL + G+ + L+ G G +E GT A++LAA+ Sbjct: 110 ISNLKGSGFRVDLLDRDLYILKQFGEAEVLETAQKQGSCPGASRSEHATGTNAINLAAVL 169 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 G+ ++ + +H+ L W A P+FD G L G + +A + L +T+A+ + Sbjct: 170 GRPIQLVGPEHYNAQLQYWTCSAAPIFDENGELLGVVNVAGHYLKVHQHTLGMTVALGKA 229 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L L E + ++++S+ +G+++ D QG + +N A +L L Sbjct: 230 IEFSLRQSRLRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKPQDVL 289 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 + +L + + +A + L + E F +++ A+ + P+ + + + Sbjct: 290 NQPADAVLGQHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVLAVFK 349 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + R + + G K F + P+ ++++ RQAA VL+ GE G GK + Sbjct: 350 GLSHARGFVKNMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGTGKEM 409 Query: 364 LSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLE 413 +QAIHN S + GP++ +NC EL+G A F G R G+ + + Sbjct: 410 FAQAIHNASSSSNGPFVGINCAAIPAELIESELFGYEGGA--FTGAKR----EGQPGKFQ 463 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LA GTLFL+++ +++ +Q+ LL+V++ TR+ IP++ ++IA + DL V Sbjct: 464 LAAHGTLFLDEVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVR 523 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 Q F L Y L+ I IPPLR R+ + L+ + R K+ I + A +++ Sbjct: 524 QGNFREDLLYRLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKLKFEFTISEPARKLMMA 583 Query: 534 CAWPGNDFELYSVIEN---LALSSDNGRIRVSDLPEHLFTEQATD-------DVSATRLS 583 WPGN EL +VIE +ALS + I DL + ++ + +V + Sbjct: 584 YHWPGNVRELENVIERCAVMALSRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFD 643 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +L +EK A+ A + TGG I + LG+ R TL+RK+K++GI Sbjct: 644 DNLE--SLEKRAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 228 bits (580), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 167/630 (26%), Positives = 305/630 (48%), Gaps = 19/630 (3%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 I P +A SW+RC K +++ QA + R ++ + ++A+E+ + ++ Sbjct: 32 IRPEVANSWQRCRN-YKVNPYDIGDQAVNQLELRERLHRNHHLVKIARSAMENLYTFVRG 90 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D+ A +L GD + + + + G E GT A+ A + Q V+ Sbjct: 91 SGFEIVLSDQHAYLLEVVGDRDIISKGTKVQLCPGGNWHESSKGTNAIGTALMEKQPVQI 150 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +A +HF + A P+FD +G + G + ++ A L + +A + L Sbjct: 151 LAWEHFCRPNHFLTCSAAPIFDPEGEIVGVLNISGDYRYANAHTLGMVVAAVNAIEKQLC 210 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + ++ LLES+ DG++S + G + +N+ ++ ++ A++G+ I Sbjct: 211 LHKVTSKLYISYKYSQTLLESISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKGKHINT 270 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 ++ A + + + E E+Q + + + TL +++ G + I + + Q R Sbjct: 271 VMRQQAPILSLLATGEGYRDREILLENQGKKVFSSATL--LLDDSGNT-IGAVAVLRQAR 327 Query: 311 QLMTSQLGKVS----HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + S+ + S ++F + + P + R AA S +LL GE G GK L +Q Sbjct: 328 DALKSRRAQHSSLPRYSFDDIIGESPAISEAKEWARIAANSGSTILLSGESGTGKELFAQ 387 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFL 422 +IHN S GP+IA+NC +A + E G G T + G + E A GTLFL Sbjct: 388 SIHNVSSFRNGPFIAINCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFESADRGTLFL 447 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + + +Q+ +L+VI++ I+R+ + +++++IA+T +L V F L+ Sbjct: 448 DEIGDMPLTVQAKVLRVIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVLNGNFREDLF 507 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL-ARLVSCAWPGNDF 541 Y L+ + +PPLR R G IP + + + + R + + +DA +L S WPGN Sbjct: 508 YRLNVLVVQVPPLRDRGGDIPLVACHLVEKISARMGKQRIVGEDAFWGKLASHNWPGNVR 567 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL-SFAEVEKEAIINAA 600 EL + IE + SD+ + L HL T + V+ T + S E+EK+AI A Sbjct: 568 ELENAIEQAVVRSDDSGVL---LARHL-TFDVVESVAPTGGRAEIVSLTEMEKQAITAAL 623 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + G IQ+ ++ LGIGR TL+RK++++GI Sbjct: 624 HLYDGNIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 165/649 (25%), Positives = 303/649 (46%), Gaps = 47/649 (7%) Query: 16 IATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 IA +WERC +L N + I + K ++ + + + ++A Sbjct: 34 IADAWERCARLGANPYAGNSKRRLAESEVQEILQHHKELIDVARPFMAKLHRFVAGSGFV 93 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 + + +E ++ GD T++ + G E IG + A + + V+ + Sbjct: 94 VLLANERGYLMETIGDQDTIRGAENIDLLPGACWREEEIGNNGVGTAVVLKKPVQVSGKE 153 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 H+ + +W P+ + ++ G + ++ PVE+T L + +A + + L Sbjct: 154 HYCRKHHSWTCSGAPILNEDKQVIGILEMSGPVEKTHLHTLGMVVAAVEAISDQLR---- 209 Query: 195 LAETNRHL----NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + + NR L N+L + ++ DG++ D QG + IN R+L ++ G + E Sbjct: 210 IQQKNRELLLLSNRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGIPVKE 269 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQ 308 L +++ + + E T + + +++ K I++ QG ++ ++P+ Sbjct: 270 LFEPGQRVEEMLDSGRDFSYSELTL-GIGEAVQCLVSGKAIMDEQGKVNGGVIFINPINH 328 Query: 309 MRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 ++ L+ G + S F+ + + R++ AA S +LL GE G GK + +QA Sbjct: 329 IKSLVNRFSGAQASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEVFAQA 388 Query: 368 IHNESERAAGPYIAVNC----------ELYG--DAALAEEFIGGDRTDNENGRLSRLELA 415 IHN S R P+IAVNC EL+G D A F G R GR + ELA Sbjct: 389 IHNASSRRDAPFIAVNCGAIPRELLGSELFGYVDGA----FTGARR----GGRPGKFELA 440 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGT+FL++I + + Q +LL+V+++ +TR+ ++IP+DV+VI + L VE+ Sbjct: 441 SGGTIFLDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKG 500 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSC 534 F R L+Y L+ IT+PPLR R+ IP L ++ L+ + ++ + +++ + + L Sbjct: 501 NFRRDLFYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDY 560 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD-------------DVSATR 581 WPGN EL +V+E + ++ RI LP+ + A +S R Sbjct: 561 DWPGNVRELQNVVERMVNIAEESRISREHLPQEISHPAARSLKELANCEDSQLLSLSTER 620 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E E+E I+ + GG + +++ LG+ R T++RK+KQ+ I Sbjct: 621 RKRKEMEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIKQYRI 669 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 167/600 (27%), Positives = 286/600 (47%), Gaps = 53/600 (8%) Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 P L++ D T L + GD + +G E IGTCA ++ + ++ Sbjct: 109 PSGFILYLCDYTGAFLLQAGDMVRVP-------TEGVAWNESTIGTCAHTICMELKKPIQ 161 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD---------LPLTLA 180 + +H+ L N A P+ D G++ +I L P+E + L L A Sbjct: 162 ILGPEHYCVGLHNIVGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSHTLGLITA 221 Query: 181 IAREV--------GNLLLTDS------LLAETNRHLNQLNALLESMDDGVISWDEQGNLQ 226 +A+ + N LLT+S ++ E N ++ L LE MD+G+I+ D G + Sbjct: 222 LAKAIETQLKLNQTNELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITLDPSGRII 281 Query: 227 FINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVI 286 +N + R+ ++ + I E L + + I + +E + +I Sbjct: 282 NMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALITAGKSVD-IEENLVIGNDEQPYII 340 Query: 287 TLKPIIET---QGTSFILLLHPVEQMRQLMTSQLGKV-SHTFAHMPQDDPQTRRLIHFGR 342 ++P++ Q + +L L+ V+++ ++ G + +++F + + + ++ + R Sbjct: 341 NIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIKKAVSIAR 400 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAAL 392 + A SS VLL GE G GK L +QAIHN S GP++AVNC EL+G Sbjct: 401 RFATSSENVLLMGESGTGKELFAQAIHNHS-CPLGPFMAVNCAAMPRELIESELFGYEGG 459 Query: 393 AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 + F G +RT GR ++ELAHGGTLFL++I + +ELQ+ LL+ ++ I R+ RR Sbjct: 460 S--FTGAERT----GRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGRR 513 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 +D ++IA T +L +V++ ++ LY+ L ITIP LR R+ I L +++ Sbjct: 514 YKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIKN 573 Query: 513 L-EKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE 571 +K+ KI AL ++ WPGN +L + + S+ N I LP+++ + Sbjct: 574 YCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTDSLPQYILLD 633 Query: 572 QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + + SLS +EK AI A I + + LLGI R+TL+RK+K +G + Sbjct: 634 SSPFQDEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKDYGFE 693 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 177/661 (26%), Positives = 309/661 (46%), Gaps = 62/661 (9%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVT-------FASIYRRKKAMLTLGQAALEDAWEYM 68 IA SW R +++N+ ++ G SI+ + K ++ + L+ + Sbjct: 53 IANSWIRS------QSYNLTPESMGTAPTISSRELNSIFEQNKELIDIAFPLLDSFKPLL 106 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + ++D + +L RNG+ + + + G E IGTCA L+ + + Sbjct: 107 TESGYMVSLVDGSGIVLYRNGNTKMVDRYGNT-IGPGVLWNEATIGTCAHVLSIRHKKPI 165 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPV-EQTTAADLP----LTL---- 179 + ++F N PLFDS G++ + L + + DL LTL Sbjct: 166 SLLGPENFPAYFQNDITSTAPLFDSDGKVIAVLILLQKLGDDPWDLDLHNLQYLTLGWVT 225 Query: 180 AIAREVG---NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL 236 ++A E+ NL L++SL TN L ++ M +G++ +G +Q IN+ AA++ Sbjct: 226 SLAMEIKTQLNLKLSNSLFKSTN---TALQTAIKMMTEGMVIVSREGLIQHINSPAAQIF 282 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQ 295 + + GR I E L L +A++Q + ++E + + +++P+ ++ Sbjct: 283 NCNTNEAIGRNIMEFLVKNDALAEALRQLKMIHNIEVEVLNDYGTQGYTFSIQPLPADSS 342 Query: 296 GTSF-ILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 G+S ++ + E+ + +++S G K+ F + + R ++ ARS +LL Sbjct: 343 GSSGGVVKIVDTEKAKNMVSSSSGAKLDFDFQSIKGASTKMLRTKSLAQRFARSPANILL 402 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRL 409 GE G GK L +QAIHNE R +GP+I +NC + E G D +NG Sbjct: 403 IGESGTGKELFAQAIHNEY-RPSGPFIVLNCAAIPKNLIESELFGYDSGAFTGAKKNGSP 461 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 ++ELA GGTLFL++I + +E+Q+ LL+V++ + R+ + +D +++A T DLA Sbjct: 462 GKIELAEGGTLFLDEIGDMPIEIQAVLLRVLENKQVMRIGGSKYRAVDFRMVAATNKDLA 521 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 LV+ +F + LYY L + IPPLR R + +L ++ R S K+ + Sbjct: 522 TLVQSGQFRQDLYYRLSVLRVDIPPLRQRDSDVLSLAEFFIQKYNWR-SKLPKLSHETKI 580 Query: 530 RLVSCAWPGNDFEL-YSVIENLALSSDNGRIRVSDLPEHLFTE----------------- 571 +L+ WPGN +L ++I L +S D LPEHL E Sbjct: 581 KLMEYTWPGNVRQLENAIIYALNVSEDE-----LILPEHLPDEIIHNKNHPASLSLNPIE 635 Query: 572 -QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++++ L +S E EK + NA +G I + LLG+ ++TL+RK+K GI Sbjct: 636 LSKENNLNEAELRDVVSLKEAEKIVVQNALAKSGNNICIAAELLGLSKSTLYRKLKLLGI 695 Query: 631 D 631 D Sbjct: 696 D 696 >UniRef50_B1ELL2 PTS-dependent dihydroxyacetone kinase operon regulatory protein n=1 Tax=Escherichia albertii TW07627 RepID=B1ELL2_9ESCH Length = 117 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 102/111 (91%), Positives = 106/111 (95%) Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 ++RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT+DVSAT LSTSLS Sbjct: 6 VSRLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATEDVSATHLSTSLS 65 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 FAE+EKEAIINAAQV GGRIQEMSALLG GRTTLWRKMKQHGID QFKRR Sbjct: 66 FAEIEKEAIINAAQVAGGRIQEMSALLGSGRTTLWRKMKQHGIDVSQFKRR 116 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 214 bits (545), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 180/638 (28%), Positives = 288/638 (45%), Gaps = 30/638 (4%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + P +A SW RC L + +A + RR A+ + +E A +M Sbjct: 28 VRPEVAQSWLRCRGL------GIDPRAPKLPVMLDARRLAAVREENRILIETALPFMEFL 81 Query: 72 ECAL----FIL---DETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 A+ FIL + + +L GD L + G AE + GT A+SLA I Sbjct: 82 RTAVKGTGFILVLTERSGVVLEVFGDEDILAMARDNNYVPGCSRAEEVAGTNAISLALIE 141 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 + V+ +H+ W A P+F +G L G + L+ + L + ++ A Sbjct: 142 KRPVQLTGAEHWNVRHHLWTCAAAPVFSPEGMLLGAVTLSGETTRAHRHTLGMVISAAEA 201 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L + E L ++L S+ + +I D G + IN A + L + A Q Sbjct: 202 IRERLREREMAEEKRGSDVLLASVLGSISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQ 261 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFE--SQHQFIDAVITLKPIIETQGTSFILL 302 G+ L P+ Q + Q P++ A FE S+ + P + + Sbjct: 262 GKPFVRLF--PS--QPELAQLLPVRGDNAAFEVSSERPGGRGHFVITPYVMYANEAVTGA 317 Query: 303 LHPVEQMRQLMT-----SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + + R+ + S V TF + + P R I R AAR + +L+ GE Sbjct: 318 ILALRERREFLNEVREFSGFNAV-FTFDDILGESPALLRQIELARTAARQNTRILILGET 376 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLE 413 G GK L +Q+IHN S R +GP++A+NC + E G G T + G++ +LE Sbjct: 377 GTGKELFAQSIHNCSPRRSGPFVALNCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLE 436 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LA GGT+FL++I + ++LQS LL+ +++G ITRL R I IDV+VIA DL Sbjct: 437 LADGGTIFLDEINQMPLDLQSKLLRALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSR 496 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL-EKRFSTRLKIDDDALARLV 532 F + LYY L E+ +PPLR R I + + L +L EK L + A+ L Sbjct: 497 TGEFRQDLYYRLSVVELALPPLRERGDDIALIARHLLDTLGEKIDKPALSLSPPAIELLR 556 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL +V+E A+ ++ I+ L + + + A S S ++ Sbjct: 557 QYPWPGNVRELENVLEMGAIMAEGSIIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQ 616 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + I +A + G + + LG+ R T++R+M+QHGI Sbjct: 617 LDLIRSAIEEFNGNVDLVGRKLGLSRATVYRRMQQHGI 654 >UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Tax=Clostridia RepID=A0Q2I8_CLONN Length = 659 Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 162/648 (25%), Positives = 307/648 (47%), Gaps = 51/648 (7%) Query: 16 IATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKK-----AMLTLGQAALEDAWEYMA 69 IA SW RC RE +NV P +GV + KK ++++ + ++ +E + Sbjct: 29 IADSWMRC-----RE-YNVNPMNGRGVVKDDQFTVKKIQENIELISIAKPIMKGLYEIVK 82 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 E A+ + D+ +L GD L+++ L F G E ++GT A+ A + ++ Sbjct: 83 GSEFAIILTDKDGYVLETIGDNSMLKRMKELNFVKGALWNEEVVGTNAIGTAIYLDKPIQ 142 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 T+ +H+ +W P+ + +G + G I ++ P TL I + Sbjct: 143 TIGAEHYCIEQHSWTCSGAPIHNEEGEVIGCINMSGNYYNAH----PHTLGIVTSAAQSI 198 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA---SQGR 246 +A ++ N +N S+ +G+I ++ ++ +N +AA++L + + + Sbjct: 199 QKQLAVAVSS---NLMNITFNSISEGIIVLNKNMKIKKVNGRAAQILNSNIDKLINTDIK 255 Query: 247 AITELLTLPAVLQ------QAIKQAHPLKHVEATFESQ----------HQFIDAVITLKP 290 I + + A++ +I++ +K E + + + I ++ + P Sbjct: 256 DIVKDIDFEAIISGKYKSFNSIERNFCVKRDEIQIDDKIYKENIKNINKKVIPCILDIIP 315 Query: 291 I-IETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 + + + ++ Q+ +L+ +G K +TF + + +++I ++ A + Sbjct: 316 MKVHEKVIGIVITFTETGQIHKLVNKVIGYKAKYTFDDIITQNQSMKKMIERAKKIALND 375 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----N 404 +L+ GE G GK L++Q+IHN S+R GP++A+NC + EF G ++ + Sbjct: 376 CNILIEGESGTGKELIAQSIHNYSKRKTGPFVAINCASIPRELVESEFFGYEKGAFTGAS 435 Query: 405 ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 + G + ELA+GGT+FL++I L +++QS LL+V+ ITR+ ++V+VI T Sbjct: 436 KEGYTGKFELANGGTIFLDEIGELPLDVQSKLLRVLDNNKITRVGGNYEKQLNVRVIGAT 495 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KI 523 L ++Q F +YY L I PL R+ I LVN + L+ + + + K+ Sbjct: 496 NRKLKEEIKQKNFRADVYYRLSVMNIKTIPLNDRKDDIEILVNYFINILDMKNNRKSEKV 555 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS 583 + +L+S +W GN EL +VIE +D + +L E + E+ D ++ Sbjct: 556 SKSYIKKLLSHSWGGNVRELRNVIERDYYLND-----IDELLESVKDEKENSDKQIEKIG 610 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + S VE EAI NA + G + LL IGR+TL+RK+K++ I+ Sbjct: 611 IN-SMDMVESEAIKNALKECNGNKVKACRLLNIGRSTLYRKIKKYNIN 657 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/634 (24%), Positives = 293/634 (46%), Gaps = 28/634 (4%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + +I S +RC+ + P + + F I ++ KA++ + + +E + ++ Sbjct: 8 NEIIKKSHKRCSNYGIKIDIPCPSKILRDEEFNVIIQKNKALIEIARPFMEILYNFLKGS 67 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 +L+ ++ +L+ GD ++ +G +G +E GT + A +++ Sbjct: 68 GFSLYFTEKNGVVLTIIGDQDIIRDQIQMGIIEGADMSEKSAGTNGIGTAFAENISLQIS 127 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 ++HF +V W ++ + D G + G + L + L L +A + + N L Sbjct: 128 GEEHFIKVFQIWTCSSSVVHDEDGNIIGCLNLTGRRQLAHPHTLGLVVAAVKSIENHLKV 187 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 E + LN + +S++ G+ + D +G ++ IN A +L ++ + + + Sbjct: 188 KKTQNELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKSACDMLHINEEDVINKNVDTV 247 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQM 309 L + Q ++ + E + + + + I + PI + T + + ++ + Sbjct: 248 LDSWKHILQRLRNGQSYEDEEIMYSDKKKRFN--INVYPIKDKNSNITGMVGIFKDIQNV 305 Query: 310 RQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 L+ + + + +TF + +RL + + S VL+ GE G GK L++Q+I Sbjct: 306 YNLVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSI 365 Query: 369 HNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGG 418 HN S R + ++A+NC EL+G A F G R G + ELA+ G Sbjct: 366 HNNSNRRSKSFVAINCGAIPKSLIESELFGYEEGA--FTGAKR----GGCPGKFELANEG 419 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I + +++Q LL+V+++G ITR+ + + +DV++IA T +L +E F Sbjct: 420 TLFLDEIGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFR 479 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWP 537 LYY L I +PPLR R G I L+ + L+ + + +I + L+S WP Sbjct: 480 EDLYYRLSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWP 539 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL-SFAEVEKEAI 596 GN EL + IEN+ + N E+ ++ + S L + S E+EK AI Sbjct: 540 GNVRELENCIENIVNMNGNTSFNF----ENRTIKKDVNCYSDVSLEYDMCSLEELEKRAI 595 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 GG I + +LGI R+TL+ K+K++ I Sbjct: 596 SICINQCGGNISKACRILGINRSTLYIKIKKYNI 629 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 164/566 (28%), Positives = 257/566 (45%), Gaps = 21/566 (3%) Query: 77 ILDETACILSRNGDPQ-TLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQH 135 ++ E IL G+ Q T+ F G E +GT + A + GQA+ +H Sbjct: 17 LVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIGTAMVIGQALDVTGAEH 76 Query: 136 FKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLL 195 F + L +W +P+F +G+ G I L+ P + L ++ A + N L Sbjct: 77 FSRGLHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIVSSAIAIENNLKQSKAF 136 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 ET + LE+ D ++ D G L +N + +VL GR E+ Sbjct: 137 KETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWKKEDLIGRRADEIFDNS 196 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII----ETQGTSFILLLHPVEQMRQ 311 + IK +K E +S+ + + PI E L +H Q Sbjct: 197 QEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENVAALIALKMHEGSQFYI 256 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 L F + + P R I + AA S PVL+ GE G GK L ++AIH Sbjct: 257 SSPPAL----KGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGTGKDLFARAIHEA 312 Query: 372 SERAAGPYIAVNC-----ELYGDAALAEEFIGGDRTD-NENGRLSRLELAHGGTLFLEKI 425 S R GP++A+N EL G ++GG T G+ + E A GGTLFL++I Sbjct: 313 SGRK-GPFVAINGGALPRELIGSELFG--YVGGAFTGARPEGKPGKFEQAQGGTLFLDEI 369 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + +++Q LL+V+++ + R+ + IP+DV++IA T +DL LV + +F LY+ L Sbjct: 370 GDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREKKFREDLYFRL 429 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELY 544 I + PLR R+ IP L + + ++ + ID L + WPGN EL Sbjct: 430 RVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNYDWPGNIRELR 489 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +V E ++ I VS LP +L Q + S + STSL E+EK+ I + G Sbjct: 490 NVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSSTSL--IELEKQEISQLLEHYG 547 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G I +++ LGI R TL+RK+ ++G+ Sbjct: 548 GNITKVAKALGIARNTLYRKLYKYGL 573 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 208 bits (529), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 158/551 (28%), Positives = 265/551 (48%), Gaps = 32/551 (5%) Query: 110 EGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA----- 164 E GT A LA + + + +++ V N A P+ D G + GT+AL Sbjct: 130 ESTTGTTAHGLATYHKKPFQLIGPENYLDVWQNMICSAAPILDEMGEVLGTLALVQDMGE 189 Query: 165 CPVEQTTAA----DLPLTLAIAREVGNLLLTDS---LLAETNRHLNQ----LNALLESMD 213 P E+ + L ++A +GN + + +L + N L + L +LE +D Sbjct: 190 KPWEKNRSNLHIHSLGWVSSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFID 249 Query: 214 DGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEA 273 +GVI+ + G + N + +R+L ++ +GR I E L + L + + ++E Sbjct: 250 EGVITIEPNGRILSSNHEGSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEE 309 Query: 274 TFESQHQFIDAVITLKPIIETQGTSF---ILLLHPVEQMRQLMTSQLGKVSH-TFAHMPQ 329 + + +++L+P+ + IL + +++ L+ ++ G V+ F + Sbjct: 310 YVVNGREEKQYLVSLRPVYKQGNDELDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVG 369 Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 + R+ AR+ VLL GE G GK L +QAIHN S R GP+IAVNC Sbjct: 370 QSEAMLKAKALARRFARTRENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPR 428 Query: 390 AALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 + E G G T E NGR ++ELA+GGTLFL++I + +ELQ+ LL+V++ ++ Sbjct: 429 NLIESELFGYESGSFTGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMV 488 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 R+ R +D ++I T DL + ++ +F LY+ + I IPPLR R I L Sbjct: 489 MRIGGRNYRQVDFRLITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAIL 548 Query: 506 VNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 + + + KR I +A R++ WPGN +L + + S+ G+I +S L Sbjct: 549 AEHFIENYAKRVGLPAAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHL 608 Query: 565 PEHLFTEQAT-----DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 P+ L +E+ T + + S ++EK I A + G + S LLGI +T Sbjct: 609 PKEL-SEKRTALPMVSEKECDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKT 667 Query: 620 TLWRKMKQHGI 630 TL+RK+K+H I Sbjct: 668 TLYRKLKEHNI 678 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 165/634 (26%), Positives = 285/634 (44%), Gaps = 27/634 (4%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 +S + A SW RC +L + +V + ++T+ +E+ + ++ Sbjct: 25 LSQIAANSWRRCLQLNVDPSRHVRVDMGARELKKRIEAHQDLVTVATPTMENIYNFVNDS 84 Query: 72 ECALFILDETACILSRNGD-----PQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + + D +L G+ P TL +L G E + GT A+ + + Sbjct: 85 GFQVVLSDNHGYLLKVLGERKTPCPSTLARLFP-----GANWNESLRGTNAIGTCLVERK 139 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 +K A +HF + A P+F +G L + L+ L + +A A + Sbjct: 140 PLKIHASEHFFEENQTLTCSAAPIFSPEGELLAVLNLSGDHRYANDLALGMVVAGANAIE 199 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L + + + +++SM +G++ D G + IN AR+L + A + G Sbjct: 200 NQLQLHRVNTKLYASYKYSDTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIGL 259 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPIIETQGTSFILLLHP 305 I+++ A + ++ ++ E + Q F + L+ + +L Sbjct: 260 HISKMFGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGAVSVLRPR 319 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 R + ++F M D ++ H +A+RS VL+ GE G GK L++ Sbjct: 320 SSSKRSRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIA 379 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLF 421 Q IHN S R P++AVNC + L E G + + G+ ++E+A+GGTLF Sbjct: 380 QGIHNASSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLF 439 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +++Q LL+++++ I R+ + I IDV++IA T +L V++ F + L Sbjct: 440 LDEIGDMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDL 499 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGND 540 YY L+ ITIPPLR R +PAL + L RF + I + S WPGN Sbjct: 500 YYRLNVLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNI 559 Query: 541 FELYSVIENLALSSDNGRIRVSDL----PEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 EL +VIE D+G +++ P L + A D R EVE E + Sbjct: 560 RELENVIERAMNMVDDGDALTAEMIDLDPVELPADHAIPD--GVR-----PLKEVEMEMV 612 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + A +++ G I S+LLGI R T++RK+K++ I Sbjct: 613 VRALEMSRGNIVHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 202 bits (513), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 184/665 (27%), Positives = 311/665 (46%), Gaps = 64/665 (9%) Query: 16 IATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED-AWEYMAPREC 73 +A SW R + L + ++ A I K ++ + +A D + + Sbjct: 49 VAESWLRSHDLGVNPYKSSLAEHLNSNEIARILAENKDLIEITKAVFVDLKIKDIMTSNY 108 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFND----GTYCAEGIIGTCALSLAAISGQAVK 129 AL++ D+ +LS G + ++ +SA + + G +E +GTCA L+ + V Sbjct: 109 ALYLFDKNGVLLSHEG--EKIKLISA-DYPESSIVGQVWSEATVGTCAHVLSMHLKKPVY 165 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD--------LPLTLAI 181 + +H+ V N A PL + + G + ++ ++ + D L L A+ Sbjct: 166 IVGPEHYCTVFQNSCTSAAPLTNEDNEIIGYLVVSYHIDFPLSHDSYYLSTYPLGLITAM 225 Query: 182 AREVGNLL-LTDSL-LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 A V N L T S L ++ H+ ++ +L +++G+I D +G + IN + + Sbjct: 226 AVAVENKLRFTKSYQLLKSAHHMQEV--ILSVIEEGIIITDNRGKIITINKEVVNIFNTA 283 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT-- 297 GR I L P + +A++ + EA + H ++ ++P+ + G Sbjct: 284 EEEIIGRTIDRFLG-PQI-GEAVRNNETVDIEEAICSNNHD-KSYLVLIRPL-DKHGNYP 339 Query: 298 -SFILLLHPVEQMRQLMTSQLGKV-SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 +L ++P+E + L+T++ G ++TF + + I G++ + S+ +LL G Sbjct: 340 NGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSNENILLTG 399 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI--------GGDRTDNEN- 406 E G GK L +QAIHN + R GP+IAVNC AA+ E I GG T E Sbjct: 400 ESGTGKELFAQAIHN-AHRPQGPFIAVNC-----AAMPRELIESELFGYEGGSFTGAERR 453 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 GR ++ELAHGGTLFL++I + +E+Q+ LL+V++ + R+ +D +++A T Sbjct: 454 GRAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAATNK 513 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK---- 522 DL + +N F L++ L I +PPLR R + L N + ++ ++K Sbjct: 514 DLERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFI----GKYCAKIKRKAP 569 Query: 523 -IDDDALARLVSCAWPGNDFEL-YSVIENLALSSDNGRIRVSDLPEHLF------TEQAT 574 I ++AL L S WPGN +L SVI + L+ + I+ LPE L+ E Sbjct: 570 LISEEALEVLKSYGWPGNVRQLENSVIYAVNLAQGD-LIQCRHLPESLYAASSSPAENYR 628 Query: 575 DDVSAT---RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 D T L +EK I NA T I + S LLG+ ++TL+RK K+ ID Sbjct: 629 DPPGMTGSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKAKELNID 688 Query: 632 AGQFK 636 G FK Sbjct: 689 MGTFK 693 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 202 bits (513), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 166/646 (25%), Positives = 312/646 (48%), Gaps = 50/646 (7%) Query: 16 IATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 +A SW R +V HQ + RK+ ++ ++ ++ Sbjct: 33 VAESWIRSKNYGVDPYKSVQAHQLSPKEKIVLAERKEMLIQTAVPLMKKYLSLLSASGYT 92 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 + + DE IL GD + + + GT +E + GT A +L AI + V+ + Sbjct: 93 MLLTDERGVILFIEGDKEKVPEEEF-----GTIVSEDVTGTNAHTLCAILRKPVQFIGPY 147 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIAL-----ACPVEQTTAADLPLTLAIAREVGNLL 189 ++ L +TP+FD G L GT+ + + A L ++A + N L Sbjct: 148 NYCIHLDENIVSSTPIFDQYGDLIGTLTIYQLFAEKDIYNMQAHSLGWITSMAYAIENQL 207 Query: 190 LTDSLLAETNRHLNQLNALLES----MDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L + N L+ N LE+ ++ G+I+ D++G IN + R+L + + G Sbjct: 208 K----LKQANEELSLSNGTLEATLAVVEGGLITLDKRGMTAHINNEGCRILGITQEETLG 263 Query: 246 RAITELL---TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP----IIETQGTS 298 T+ L + +L+ K + + E++ Q++ ++ + P I + Sbjct: 264 EHFTKYLQNDKITGILKDG-KAVSNHEIIIDNGETEKQYVMSIYPIVPQDTCNINDKLNG 322 Query: 299 FILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 ++ L +E +++L+ G +++F + DP +++ RQ ++ VL+ GE Sbjct: 323 IVIHLSRIENIKKLVNDWRGASATYSFEDIQGKDPLFLKIVGIARQYSKLYANVLIHGES 382 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENG 407 G GK L +QAIHN S GP+I++NC EL+G A F G +R G Sbjct: 383 GTGKELFAQAIHNAS-CPEGPFISINCSAMPRNLIESELFGYEGGA--FTGAER----KG 435 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R +ELA+ GTLFL++I + +E+Q LL+V+++ + R+ ++ IP+ +VI+ + + Sbjct: 436 RPGLIELANEGTLFLDEIGDMPLEIQPVLLRVLEEKKVMRVGGKKYIPVSFRVISASNKN 495 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 L ++V++ F LYY L F++ IPPLR R I +L ++ ++ ++ + A Sbjct: 496 LNIMVQEKTFREDLYYRLAVFKLQIPPLRKRPDDIISLAQFFIKGTSQKVGRKMPVLSKA 555 Query: 528 LARLVS-CAWPGNDFEL-YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 +++ AWPGN +L S++ ++L+ + I DLP+ + T T + ++ S+ Sbjct: 556 AQKVIKEYAWPGNVRQLENSMVYAVSLTQGD-VIGAEDLPDDI-TNPITPE-NSRLFSSV 612 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +S E+E AI NA + T I + +LG+G++TL++K+K++ ++ Sbjct: 613 MSLREMEITAIKNALEQTNQNIANAANILGLGKSTLYKKLKEYHLE 658 >UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PFE6_BACCO Length = 610 Score = 201 bits (512), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 159/637 (24%), Positives = 282/637 (44%), Gaps = 59/637 (9%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYR------RKKAMLTLGQAAL 61 D I+ IA SW RC K+ N P+ +G + + R K L + + + Sbjct: 19 DPERINNRIAESWYRC----KKRDVN-PYLRKGQHILPVEKLLAHRERHKDFLNIAERHV 73 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + ++D +LS +G+ +T+ + + F +G E +GT A+ Sbjct: 74 KKMEPVFQEAGMMALLIDPCGHVLSVSGNRKTIFEAQKINFVEGVCWTEERVGTNAIGTT 133 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 +G+AV +HF W+ A P++DS+ L G + L CP ++ P LA+ Sbjct: 134 LETGEAVMVNGPEHFSVASHQWSCAAAPVYDSQRNLVGVMDLTCPYTESH----PFMLAM 189 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDG----VISWDEQGNLQFINAQAARVLR 237 + + + + +RH + +E D ++ DE+G A+R LR Sbjct: 190 VSSLAYTVEQEIVRMAKSRHERFIQKAVELSDQYGDRLLVITDEEGKA----VAASRPLR 245 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 GR I E+ + ++ I L E GT Sbjct: 246 KKMPDYFGRTIEEMTS-----------------------QTDTIVNQSIPLPSSREKIGT 282 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 F L + + L + L K F + + + R A+ S + GE Sbjct: 283 CFFL-----SENKNLSGTLLQKEKFVFRGVTGISRSFQETLRKARIASLSDTTCFITGET 337 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLE 413 G GK L+++AIH S R GP+IAVNC + EF G G T G + E Sbjct: 338 GTGKELVARAIHENSSRKNGPFIAVNCGAVPKELMESEFFGYADGAFTGAKRGGHKGKFE 397 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 AHGGTLFL+++ L +Q+ALL+V+++ + + + + + +DV++IA T DL LV+ Sbjct: 398 QAHGGTLFLDEVAELPSAMQTALLRVLQERKVVPVGSAKEVSVDVRIIAATHKDLPKLVK 457 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 + +F L+Y L+ F + +P LR R+ +PAL+ + + ++ + ++I + ++ Sbjct: 458 EGKFREDLFYRLYVFPVRLPALRERKEDLPALI----QYISRKKNQDVEIPPAVMKKMQD 513 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 WPGN EL +VIEN+ L + G + + + + +++T +E+ Sbjct: 514 YHWPGNIRELMNVIENVRLLAVAGEEEAERYVDEYVSGETGLNGMEKQVTTLNPREAIER 573 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + I+ A + T G + +L I R+T +RK++++G+ Sbjct: 574 DMILEALKHTKGNAAAAAKMLDIPRSTFYRKLRKYGL 610 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 138/437 (31%), Positives = 217/437 (49%), Gaps = 23/437 (5%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL---LTLPAVLQQA 261 +L+ DG+IS ++ + N A R+ ++D A+ G+ IT++ L L VL Sbjct: 196 FRTVLDFAYDGIISVNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVLTTG 255 Query: 262 IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVS 321 + L V T ++ + V+ KP+ + ++QM + ++ Sbjct: 256 RDELGQLLKVSGTRVLCNK-VPIVVNGKPV---GAVATFQDAGNIQQMEARIRREIYARG 311 Query: 322 H----TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 H TF + D PQ R +H ++ A++ VL+ GE G GK + +Q+IHN S RA G Sbjct: 312 HVATFTFEDIVGDSPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANG 371 Query: 378 PYIAVNCELYGDAALAEE---FIGGDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQ 433 P++A+NC L E ++GG T ++ G+ ELAHGGT+FL++I + Q Sbjct: 372 PFVAINCAALPSQILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQ 431 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 LL+V+++ + RL + R+IP+DV+VIA T +L+ LV +N+F LYY L+ + +P Sbjct: 432 GKLLRVLQEKKVMRLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLP 491 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALS 553 PLR R I L + RL AL RL WPGN EL + IE + Sbjct: 492 PLRERGADIIRYAEFFLEKHSAAQNRRLAFTPAALERLARHPWPGNVRELQNTIERIVAV 551 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 R + L + DD + ++ A+ EKE I A + G+ E + L Sbjct: 552 C-----RQPQVDAGLVAQMLEDDADS---GIEVAAADSEKEQIRQALAIAKGKQGEAARL 603 Query: 614 LGIGRTTLWRKMKQHGI 630 LG+ R+TLWRKMK+ G+ Sbjct: 604 LGVSRSTLWRKMKKLGL 620 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 200 bits (508), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/454 (31%), Positives = 231/454 (50%), Gaps = 32/454 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVLQQ 260 Q A+L+ +G+++ D++G + +N A ++L L A GR E+L L VLQ Sbjct: 194 QFKAILDFAYEGIVATDQEGRITLVNPAAEKILGLAAHRVVGRPAREVLPGVPLNQVLQS 253 Query: 261 AIKQAHPLKHVEATFESQH--------QFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 K+ L T +++ + + AV T + + Q + RQ Sbjct: 254 GQKRLGELHRAGNTLVAENIIPVIAGRETVGAVATFQDVSHLQAVE--------ARARQE 305 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + + +TF + P ++I RQ A + VL+ GE G GK +++Q+IHN S Sbjct: 306 LYLKGHVARYTFEDIVTQSPVMAKIIERARQFAAAEATVLINGETGTGKEMVAQSIHNAS 365 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYL 428 R GP++AVNC + L E G + + G+ ELAHGGTLFL++I L Sbjct: 366 RRRNGPFVAVNCAAVPENLLESELFGYEEGAFTGARKGGKKGLFELAHGGTLFLDEIGEL 425 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 ++ LQ+ LL+V++Q I R+ R++P+DV++IA T +L + ++ F R LYY L+ Sbjct: 426 SLNLQARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNLKDAIARDAFRRDLYYRLNVL 485 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK--IDDDALARLVSCAWPGNDFELYSV 546 +I +PPLR R +P L+ + + +R + RL ++ +AR+ + +WPGN EL ++ Sbjct: 486 QINLPPLRERPEDLPLLIKALVEKISRR-AGRLPPIFSEEIIARMQAYSWPGNVRELENI 544 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT-RLSTSLSFAEVEKEAIINAAQVTGG 605 +E L + + DL E L E A + +L+ + AE+E E I +TG Sbjct: 545 LERLVVLRSGEEVEAGDLDEIL--EPAENQPQPVLQLALRGTLAEMEGEIIRRTLALTGN 602 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV 639 +E LG+ +TTLWR++K D GQ RRV Sbjct: 603 NKEETCRRLGLSKTTLWRRLKSWQ-DEGQ--RRV 633 >UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4 Tax=Betaproteobacteria RepID=A1K4T7_AZOSB Length = 686 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 163/615 (26%), Positives = 274/615 (44%), Gaps = 43/615 (6%) Query: 35 PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTL 94 P A+G + RR + ++ + +A + + +L GD TL Sbjct: 79 PVAARGDDMELLRRRHRELMAAASNLFAHTGDLLAGSHSIMLLTSPEGVVLDAAGDAATL 138 Query: 95 QQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSK 154 + G E ++GT + A + + +HF + + W A P+F+ Sbjct: 139 DAARDIHLMTGGNWCEAVVGTNGIGTAIATRCPAQIHGAEHFCEGIQGWTCAAAPIFEPG 198 Query: 155 GR-LTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQ-LNALLESM 212 + + G + ++ P + +L L +++AR++ + L+ S L E R L +N L + Sbjct: 199 TQDILGVLDISGPPQTFQRNNLLLAVSVARQI-EMALSHSALGERLRLLEHCMNRLSLAD 257 Query: 213 DDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVE 272 G+++ D QG L S GR + LP + + + P +E Sbjct: 258 AAGMVAIDRQGRL---------------IHSAGR-----VPLPVGVGERLPGFRPHADLE 297 Query: 273 ATFESQHQFIDAVIT--LKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH-------T 323 E + + L P++ T ++L P +R ++L + S Sbjct: 298 ---EWAAHLPEGLRPEWLHPVVAGGRTVGAVVLVPGRGVRNSPVARLAEQSSEADPRRSC 354 Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F ++ P R GR+ A PVL+ GE GVGK L ++A+H E GP+I N Sbjct: 355 FDNILGRSPAMREATDLGRRLATKRVPVLVEGETGVGKELFARALHG-GEHLGGPFITYN 413 Query: 384 CELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQV 439 C +A + G R +GR R ELA+GGTL L++I + ++LQ LL+ Sbjct: 414 CGAASKELIAADLFGHVRGAFTGATNDGRPGRFELANGGTLCLDEIGEMPLDLQPVLLRA 473 Query: 440 IKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 +++G++ RL + +DV++IA T +L V RF R LYY + + IPPLR R Sbjct: 474 LEEGIVYRLGDTQPRRVDVRLIAMTNRNLREEVAAGRFRRDLYYRIGVTRLRIPPLRERD 533 Query: 500 GSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGR 558 G IP L ++ L +R R + + L L + WPGN EL +V+E+L L + Sbjct: 534 GDIPLLASHFCTQLAERHGVPRREFGPEVLDALQAYCWPGNVRELRNVVESLLLMDSTPQ 593 Query: 559 IRVSDLPEHLFTE--QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 +RV +LPE + QA + S E+ AI A G + + + LLGI Sbjct: 594 VRVDELPEEILASVPQAARPAAEGAEPECPSLEAAERRAIQKAVINFQGNLAQAARLLGI 653 Query: 617 GRTTLWRKMKQHGID 631 R+TL+RK++++ ++ Sbjct: 654 SRSTLYRKVERYALE 668 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 162/564 (28%), Positives = 265/564 (46%), Gaps = 71/564 (12%) Query: 105 GTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAF---------CATPLFDSKG 155 G+ E ++GT + I + V ++ + NW F A P+ D+ G Sbjct: 131 GSILREEVLGTNCTARCLIEQRLVYVLSGE-------NWKFDLRKRHRQCAAAPVRDASG 183 Query: 156 RLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDG 215 +L G + L + A L A A VG L+ LLAE ++LE++++G Sbjct: 184 QLIGVLTLTATPDNFNAHTLGTVQAAAEAVGQQLMLRRLLAEQQ-------SILETLNEG 236 Query: 216 VISWDEQGNLQFINAQAARVLR-LDATASQGRAITE-----LLTLPAVLQQAIKQAHPLK 269 VI D G ++ +N A ++ LD A + + LLT+P + ++ Sbjct: 237 VIVCDRHGRIKTLNRYARQIFSGLDPDAGTIDVLLQPQGASLLTMPFCNDRELQ------ 290 Query: 270 HVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMP 328 Q I +I+L P + +L L +++R + +G S+TF + Sbjct: 291 ----FMPDGVQSIPCLISLMPAPDG---GRVLSLRENQRIRAITRRVMGVSASYTFDMIR 343 Query: 329 QDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC---- 384 P+ ++ I R ++R+ VLL GE G GK L +QAIHN S R +IA+NC Sbjct: 344 GHAPRVQQAIQKARASSRTDSTVLLTGESGTGKELFAQAIHNASPRQQEAFIALNCGALP 403 Query: 385 ------ELYG--DAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 EL+G D A F G R G + ELA GGTLFL++I + +E Q++L Sbjct: 404 RDLVQSELFGYVDGA----FTGSRR----GGSPGKFELADGGTLFLDEIGEMPLEAQTSL 455 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+++ + R+ A + ++V++IA T +L VE+ F R LYY L+ + IPPLR Sbjct: 456 LRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEKGAFRRDLYYRLNVVSLAIPPLR 515 Query: 497 MRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 R+ IP LVN + +L R ++ +A+ L + WPGN EL +++E + + Sbjct: 516 ERQEDIPGLVNTFILALCARLKRIAPQVSPEAMRCLQAWHWPGNVRELENLVERMVNLCE 575 Query: 556 NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 I DLP+ + Q +L S E E++ ++ G +++ + LLG Sbjct: 576 GLEIDRQDLPDDMVQRQQ----PPVQLP---SLQENERQHVLQVVAEQHGNLRQSAQLLG 628 Query: 616 IGRTTLWRKMKQHGIDAGQFKRRV 639 I RT L+ K+ Q +D +RR+ Sbjct: 629 ISRTALYNKLNQWQVDLASLRRRL 652 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 197 bits (500), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 165/583 (28%), Positives = 267/583 (45%), Gaps = 19/583 (3%) Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 A L + ++ ++P + + ++D IL G + + G E +GT A+ Sbjct: 60 AQLSELFDLLSPDDFMVAVVDGEGYILHMFGSDNIKAKFAERNCAPGYRWTERDVGTTAI 119 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 SL AV+ H+ Q + A P+F G L G + ++ + L + Sbjct: 120 SLCLERRIAVQLNDKDHYCQRAHGFTSSAAPVFGHAGNLQGILVVSGNSQLVHPHTLCMI 179 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 + AR V L +E H+ L+A+LES G++ D QG + +N + ++L+ Sbjct: 180 SSAARSVERQLRILRRNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQILKK 239 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT- 297 A Q ++ + L L ++ + + E T ++ Q I + + +P++ + Sbjct: 240 TDLAGQEVSVLQGLDLD--IEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQSM 297 Query: 298 -SFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 +L P++ +R+L + G K TF M RR ++AA S VLL G Sbjct: 298 LGVVLEFEPIDSVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRG 357 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSR 411 E G GK L +QAIHN S R + P++ +NC L E G G T + GR + Sbjct: 358 ETGTGKELFAQAIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGK 417 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 ELAH GT+ L++I + ++Q LL+V++ G + R+ AR+ +D ++IA T DL Sbjct: 418 FELAHRGTILLDEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKA 477 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMR-RGSIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 V RF LYY L+ I IP LR R R I AL L + T ++ A+ Sbjct: 478 VAAGRFREDLYYRLNVLPIVIPALRERGRDDILALTEF---FLSRNRVTPPQLTVGAVKA 534 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L + WPGN EL + I+ + I + L E A S+T T E Sbjct: 535 LENHPWPGNVRELENTIQRALHLCEENEIDAACLG---VPETAAAASSSTPRGT---LEE 588 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 +E+ AI + T G + E + LGI R TL+RK+K++ ++ G Sbjct: 589 IERLAIEQTLEDTKGNMAETAKTLGISRATLYRKVKRYSLETG 631 >UniRef50_A5N2U4 Predicted signal transduction and transcriptional regulator protein n=2 Tax=Clostridium kluyveri RepID=A5N2U4_CLOK5 Length = 659 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 154/644 (23%), Positives = 289/644 (44%), Gaps = 53/644 (8%) Query: 16 IATSWERCNKL----MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 IA SWERC +KR + N+ + + + + + + + +++ +E + P Sbjct: 38 IAASWERCINSQVDPLKRNSGNIIYDLRDMLEQ---EKNNLLFKIAEPFMKNLYEVIKPL 94 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + +E + G+ + + + G E IGT A S+ ++ + + Sbjct: 95 GFIAMLGNEDGINIDMGGNKKMMSIAEKINAVKGASFEEKYIGTNAASICSVEKRVAQVT 154 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +H+K + NW + P+F+ +G + I ++ T+ PL +++ L+ Sbjct: 155 YYEHYKANMHNWCCSSVPIFNKEGNMIAVINVS---NMDTSKHTPLLISLIASTARLIEM 211 Query: 192 DSLLAETNRHLNQLNALL-ESMDDG---VISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L + N NQ L ESM ++ D G + IN A +L + S GR Sbjct: 212 KFKLYDANDIYNQNYWFLKESMKKNPRALLFLDNNGCINHINENAVEMLGVSTKESIGRH 271 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFI-LLLH 304 ++E+ + + +K++ ++++ + L I+ + ++ ++ Sbjct: 272 LSEVFDKKYIKNDKMDVGSNVKNIILEDRNRNK---TYLKLSKILSSDKYHLGYVGIIEQ 328 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 PV+ + K ++F + + + + I ++AA + V + GE G GK L Sbjct: 329 PVKN-----SGNHHKAKYSFEDIKYNCSKMDKEIKKAKRAAYNDMVVFINGESGTGKELF 383 Query: 365 SQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLEL 414 +QAIHN +R GP+IAVNC EL+G A F G + G+ + +L Sbjct: 384 AQAIHNYGKRCNGPFIAVNCGALPRELIQSELFGYEKGA--FTGAKKE----GQPGKFQL 437 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GTLFL++I + +ELQ+ LL+V+++ +T L + +I +DV++I T DL + VE+ Sbjct: 438 AQKGTLFLDEIGDMPMELQANLLRVLQEKTVTPLGSNEIIELDVRIITATNKDLLLEVEK 497 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-----TRLKIDDDALA 529 F LYY + I +PPLR R + L + L+K S +K+ D+ + Sbjct: 498 GNFREDLYYRISGINIDVPPLRERGKDVEELF---YKFLDKYASDVCEYKNIKVTDEFIR 554 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 L WPGN EL +++ ++ + ++ I V DLP + + + + + Sbjct: 555 ALCEYKWPGNVRELENMVISILNNLEDSCIGVEDLPAKILKCIKVEGNTKPE-NDGMYLK 613 Query: 590 EVEKEAIINAAQV---TGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ +IN Q I + + LGI R TL+RK+ ++ I Sbjct: 614 SLDSTEMINIEQTLKRCNNNISKSAKSLGITRATLYRKIDKYKI 657 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 162/646 (25%), Positives = 281/646 (43%), Gaps = 82/646 (12%) Query: 40 GVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSA 99 G +I K ++ + + ++ + + E + + D+ CIL G + +L Sbjct: 33 GEELENILTINKELIEVSKIYIDMVFSAVMDNEFIIVLTDKNGCILYIKGAEENNSKLGG 92 Query: 100 LGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTG 159 G Y E IGT A+ A + ++ A +H+ + N A P+ ++KG + G Sbjct: 93 NNLEVGAYMDEQNIGTNAMGTAIKEDRCIQITATEHYIKRFHNLTCSAAPIHNTKGEIIG 152 Query: 160 TIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISW 219 T+ L + L L + + + N L + N+ N + ++++++D G++ Sbjct: 153 TLNLTGRRDMKHPHTLGLVVFGVKAIENELDKKGIRDILNQTYNYMESVIDNVDKGIMIV 212 Query: 220 DEQGNLQFINAQAARVLRLDA--TASQ---------GRAITELLTLPAVLQQAIKQAHPL 268 +++ + IN + +D SQ G I EL + + +K H Sbjct: 213 NKEYKVININKLGVEIFNIDKDLIISQDIHYILPDLGNVIEELENHNDDIIKELKLKHTS 272 Query: 269 KH----VEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTF 324 +H V + + I V+T+ E +G TF Sbjct: 273 RHKIRLVFKGLKHKENIIGMVVTIS--YEKEGKD---------------NKNATGAFFTF 315 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + D +I + A S VL+ GE G GK +L+QA+HN S R ++A+NC Sbjct: 316 NDIIGDSAAIVNVITNCKVIANSPSTVLIQGESGTGKEILAQAMHNYSVRRRNKFVAINC 375 Query: 385 ----------ELYG--DAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 EL+G D F GG R G + E+A GGTLFL++I + ++ Sbjct: 376 GAIPANIIESELFGYEDGT----FTGGKR----GGNPGKFEIASGGTLFLDEIGEMPIDA 427 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V++ G +TRL R IPIDV+VIA T +L V++ F LYY L IT+ Sbjct: 428 QVKLLRVLQNGRVTRLGGSREIPIDVRVIAATNKNLKREVQKGNFREDLYYRLCVIPITL 487 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR R+G + L++ LR + + + +ID +L+ WPGN EL + IEN+ Sbjct: 488 PPLRERKGDVKMLIDFFLRIKSFQLNKSIPEIDKSLYNKLLDYDWPGNIRELENYIENIV 547 Query: 552 ----------------------LSSDNGRIRVSDLPEHLFTEQATD----DVSATR---L 582 + D ++ L + ++ + T+ +V+ + + Sbjct: 548 NLDGRSSFNLWEFEDNQSFETDKTYDRKILKDGFLNKEIWEDDQTNGLLKNVNTEKTEYM 607 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +L+ E+E +AI A ++ + + + LGI R TL+ K+K+H Sbjct: 608 VNTLNLEELEMKAIHEAVRINDHNMTKAAKTLGISRNTLYLKLKKH 653 >UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A511_ALHEH Length = 662 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 175/648 (27%), Positives = 290/648 (44%), Gaps = 53/648 (8%) Query: 15 LIATSWERCNK--LMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 LI+ SW+RC L R+ + +G R +L + A + ++ ++ Sbjct: 30 LISKSWQRCQAYGLDPRKKPKDANVLEGPQVKEERERHGELLKVANAEMHSLYQQVSGSG 89 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 +L + D IL GDP ++ + G G +E GT + A + V + Sbjct: 90 WSLLLTDNRGVILDYVGDPNLRREFRSAGLWLGADWSERHEGTNGIGTALTESRPVAVLR 149 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 DQH+K + C P+ D+ G++ + + T TLA+ + Sbjct: 150 DQHYKACHHALSCCGAPILDANGQVMAVLDASTVNGNQTPETQSHTLALVTLSAQFISKW 209 Query: 193 SLLAE-TNRHLNQLNALLES---MDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRA 247 L E ++ + + ++ E ++DGV++ G + + A L L D G Sbjct: 210 RFLEEFSDAIIIRFHSRCEYVGLINDGVLAVSRDGTIVGADHNACVFLGLPDRHRLIGWP 269 Query: 248 ITELLTL-PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 I ++L + P +L + ++ + V T +Q + A I L + + Sbjct: 270 IDQVLDIRPEILVERAERPYLPYWVLTT--AQGTQLHARIQLGHTAAGRRAA-------- 319 Query: 307 EQMRQLMTSQLGKVSHTFAH---------MPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 EQ + + Q S H + +DP+ R ++ + P+LL GE Sbjct: 320 EQPARPVPVQSRSASQPRDHRATLCTLEALKGNDPRMARNVNRAYRIIDKDIPILLNGET 379 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENG 407 G GK L ++A+H S R GP++AVNC EL+G A F G DR NG Sbjct: 380 GTGKELFARAVHTASSRRDGPFVAVNCASIPEPLIESELFGYKGGA--FTGADR----NG 433 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ++ AHGGTLFL++I + +ELQ+ LL+V+++ I + + +DV +++ T + Sbjct: 434 RKGKILQAHGGTLFLDEIGDMPLELQARLLRVLEEREIVPIGGDKPQAVDVYLVSATHHN 493 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDD 526 L LV + RF LYY L+ +T+PPLR R A + +R + + S R+ ID Sbjct: 494 LPELVAEGRFREDLYYRLNGLTLTLPPLRDR-----ADCQDVIRCILRLESDGRVDIDQA 548 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF--TEQATDD--VSATRL 582 ALA L + WPGN +L +V+ SD + V DLP+ + E A DD + T Sbjct: 549 ALAVLRNHPWPGNIRQLRNVLRTAVALSDGETLTVEDLPDDVLDAAETAGDDQVIEGTCT 608 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A E+ A+ A + GG + + LG+ R TL+RKM++HG+ Sbjct: 609 GGGDPLANAERRALQAALEQHGGNVSRTAESLGVSRNTLYRKMRRHGL 656 >UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HEU6_ANADF Length = 637 Score = 192 bits (489), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 178/641 (27%), Positives = 279/641 (43%), Gaps = 34/641 (5%) Query: 11 GISPLIATSWERCNKLMKRET--WNVPHQAQGVTFASIYRRK--KAMLTLGQAALEDAWE 66 G+ P IA SW R L + + P A G + RR+ L + L Sbjct: 8 GVRPEIARSWTRVRDLYRVDPALRRAPLDAGG----EVLRRRGEDETFELARPVLAQLSA 63 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + AL +LD +LS GDP + +L+ L G E + GT A + Sbjct: 64 RLGETGHALALLDAEGRVLSIGGDPHVVARLAELNLTPGASWREEVAGTNGAGTALAERR 123 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ A +HF + WA A P+ G L G + + P + + +AIA V Sbjct: 124 PVEVFASEHFVEAWHPWASAAAPIVAPGGELVGLVQVTGPWDTREPQGVVAAVAIAAAVE 183 Query: 187 NLLLTDS-LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L + L E RH L A S DGV++ D +G + N A R L + Sbjct: 184 ERLRARAELRDELVRH--ALRAA-RSSGDGVVAVDARGRVLAANDAARRRLAFEG-GELP 239 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVIT--LKPIIETQGTSFILLL 303 R+ E + +A ++ + + + + +V+ +P+ + + Sbjct: 240 RSTRERIVAALHGSEATREDELTVEWPGAGDERRRVVCSVVAHERRPV-----GALLFAA 294 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P + + Q + F + + R + AAR+ PV+L GE G GK L Sbjct: 295 APAGRASRGAARQRLAARYGFEAILGGSARLRTALDLAEVAARNDLPVVLHGESGTGKEL 354 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGT 419 + IH RA P++A+NC A + E G G T + G+ R E A GGT Sbjct: 355 FAHGIHAGGARADEPFVALNCGAIPAALVEAELFGYEPGTFTGAQREGKAGRFEEADGGT 414 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I L + Q+ALL+V+++ + RL P+DV+++A T L VE RF + Sbjct: 415 LFLDEISELPPQAQTALLRVLQESEVVRLGGSAPRPVDVRIVAATNRRLYDQVETGRFRQ 474 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 LY+ L+ + IPPLR R +P L LR E+R L++ +++ A L++ WPG Sbjct: 475 DLYFRLNVLHVDIPPLRDRSEDVPLLARAFLREAEERMGRAGLELSEESKALLLAHPWPG 534 Query: 539 NDFELYSVIENLALSSDNGRIRVSDL------PEHLFTEQATDDVSATRLSTSLSFAE-- 590 N EL +VI A + RI +DL P A + R L+ AE Sbjct: 535 NVRELRNVIMRAAAVASGARIEPADLRLGPARPAAAPARPAAPSPAVERPPQPLAAAEGE 594 Query: 591 -VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+E ++ A +G I +A LG+ R TL+R++++ GI Sbjct: 595 GPEREELVAALDASGWNIARTAASLGVSRMTLYRRLRKFGI 635 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 191 bits (486), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 183/663 (27%), Positives = 288/663 (43%), Gaps = 78/663 (11%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 +SG + G+ P I SW+RC T + A V R +L Sbjct: 23 LSGETTDLPAGVRPEILRSWQRCQT---GGTDALAAGAPSVPRPDTPTRSCELLEAASDT 79 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 L+ + L + D ++ GDP T ++ + G E IGT + Sbjct: 80 LDQLGRLLDGTGAMLLLCDGEGVVIRAMGDPSTREKGREINLEVGGRWDEEAIGTNGIGT 139 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLT-GTIALACPVEQTTAADLPLTL 179 A G+ V A +HF + W+ A P+ D G T G I L+ +L L Sbjct: 140 AIREGRPVFVHACEHFCAGIKGWSCAAAPIRDPFGFGTIGAIDLSGGPGIFRPHNLALVA 199 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQ--LNALLES-----MDDGVISWDEQGNLQFINAQA 232 A ARE+ ++LL E +R + L A +++ DD V+ D G + + Sbjct: 200 AAAREI------EALLGERHRQERERLLAAFIDAGASRGPDDAVVILDRVGRVVYSR--- 250 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 QG + + L +K PL + S Q + A L P + Sbjct: 251 --------NPPQGGGLRDGL---------LKVGQPLLDL-GPHPSDTQIVAA---LPPAL 289 Query: 293 ETQGTSFILL--------LH-PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRL----IH 339 + G S ++L LH P + +++++ + T A P + + Sbjct: 290 QPSGISPLILDGERRGTVLHLPARTKPRPVSAEIRPRAGT-AEPPLPIVGASDIFLEAVD 348 Query: 340 FGRQAARSSFPVLLCGEEGVGKALLSQAIH-NESERAAGPYIAVNC----------ELYG 388 R+AA + +L+ GE G GK L ++ +H +E +A P+I +NC EL+G Sbjct: 349 LARRAAEAGSSILVQGETGTGKELFARLVHASERHKADAPFITMNCGAIAVELVASELFG 408 Query: 389 DAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRL 448 A A F G R +GR + ELAHGG L L++I + +++Q LL+V++ I R+ Sbjct: 409 HVAGA--FTGAMR----DGRPGKFELAHGGVLCLDEIGEMPLDIQPYLLRVLESRAIYRV 462 Query: 449 DARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN 508 R P++V+V+A T DL V F LYY + I +PPLR R+G +P LV++ Sbjct: 463 GDSRRRPVEVQVVAMTNRDLMQDVSSGAFRADLYYRISTVTIEVPPLRARQGDVPLLVDH 522 Query: 509 -KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH 567 + + L+ D A+A L +WPGN EL +V + L + R+ VSDLPE Sbjct: 523 FNRAAARRLNRAPLRFSDAAMALLDGWSWPGNVRELRNVCDRLHVFVRGDRVEVSDLPEP 582 Query: 568 LFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + + S EVE+ AI A G + ++A+LG+ R TL+RKM+Q Sbjct: 583 MRRAPTLPSRPGEQ-----SLDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQ 637 Query: 628 HGI 630 +GI Sbjct: 638 YGI 640 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 189 bits (481), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 154/548 (28%), Positives = 254/548 (46%), Gaps = 34/548 (6%) Query: 105 GTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAF--CATPLFDSKGRLTGTIA 162 G+ E + GT LA + V +++++F L A P+ D GR + Sbjct: 134 GSVLLESLQGTNCTGLAIAENRLVYVLSEENFGTWLRQRRMHCAAAPIRDLGGRTLAILT 193 Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 L + L A A V + +LL E LLE +++G++ DE+ Sbjct: 194 LTAEPGRFHFHTLGTVQAAAEAVSRQMALQALLEEQR-------TLLEVLNEGLVVLDER 246 Query: 223 GNLQFINAQAARVLRL--DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 G ++ +N A ++ R+ D + + + ++L +A + H L + H Sbjct: 247 GCIKALNRYARQLFRVERDLLGAPFHRLGRGERVDSLLLRADEGLHDLDITLQLHDGTH- 305 Query: 281 FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIH 339 + L + T+ I+ L ++R++ +G + S+TF + + + Sbjct: 306 ----LSCLASVCPTERGGRIVSLRENRRIREITRRIIGTQASYTFETILGGSRAMQDTLR 361 Query: 340 FGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGD 389 R A+R L+ GE G GK L +QAIHN SER GP++AVNC EL+G Sbjct: 362 LARIASRGDSTTLILGESGTGKELFAQAIHNASERCGGPFVAVNCGAIPRDLVQSELFG- 420 Query: 390 AALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 + F G R G + ELA GGT+FL++I + + Q++LL+V+++G +TR+ Sbjct: 421 -YIEGAFTGSAR----GGSAGKFELADGGTIFLDEIGDMPFDAQASLLRVLQEGEVTRVG 475 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 A+R P+DV+++A T +L+ V F LYY L+ +++PPLRMRR IP L + Sbjct: 476 AKRSQPVDVRIVAATNRNLSRAVADGSFREDLYYRLNVLSLSVPPLRMRREDIPTLAQHF 535 Query: 510 LRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL 568 L + ++ I +AL L++ AWPGN EL + IE A + I DLP L Sbjct: 536 LERCARSLRKPVRGIVREALDILMAHAWPGNVRELENTIERAANLAGGELIEAEDLPLEL 595 Query: 569 FTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 A R ++ E AI A + G ++ + LG+ R L+ KM ++ Sbjct: 596 AQVARRAAEPAVRCGAAMDLGSHEMNAIAAALRECRGNVRLAAKRLGVSRGGLYNKMNRY 655 Query: 629 GIDAGQFK 636 G+ A F+ Sbjct: 656 GLSADAFR 663 >UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Citreicella sp. SE45 RepID=D0D5X9_9RHOB Length = 647 Score = 189 bits (479), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 165/602 (27%), Positives = 265/602 (44%), Gaps = 74/602 (12%) Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 +++ + + + D+ I+ GD L + G E +GT + A +G+ Sbjct: 76 HLSDAKSIMLLADDQGVIIDAIGDASVLDDGQGIHLEVGGQWNEKTVGTNGIGTALKTGK 135 Query: 127 AVKTMADQHFKQVLWNWAFCATPL---FDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + A +HF + + W P+ FD+ + G + L+ P + ++ L LA AR Sbjct: 136 PMYVHAAEHFVEGVQAWTCAGAPIRNPFDNS--VIGVVDLSGPPDIFRRHNIALVLAAAR 193 Query: 184 EVGNLLLTDSLLAETNRH--LNQLNALLESM----DDGVISWDEQGNLQFINAQAARVLR 237 E+ + LAE R L A L+S D+ V+ D G + F Sbjct: 194 EI------EIALAEQQRQDRTQLLEAFLQSKYSQADNSVLLLDRNGRILF---------- 237 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 R + E T P+ + + Q L +EA F ++ D L P +E QG Sbjct: 238 -------RRGVDET-TFPSSDKLLVGQKL-LPDLEA-FNAK----DLPTLLPPNVEAQGL 283 Query: 298 SFILLLHPVEQM-------RQLMTSQLG--------KVSHTFAHMPQDDPQTRRLIHFGR 342 ++L + R L ++G VS H+ P+ I Sbjct: 284 ERLVLDNDYRGAALFLKCDRSLRRPEIGARRIQPRPNVSEEPIHIVCASPKMLEAIELAE 343 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD-- 400 +AA+++ VL+ GE GVGK L ++ IH+ R PY+ VNC AA++ + IG + Sbjct: 344 RAAQANVSVLIQGETGVGKELFARLIHSRLGRPDSPYVPVNC-----AAISNDLIGAELF 398 Query: 401 -RTDN------ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 D GR + E A+GG L L++I + +ELQ LL+ ++Q I R+ + Sbjct: 399 GYVDGAFTGAARGGRAGKFEQANGGLLCLDEIGDMPIELQPYLLRALEQRAIYRMGDSKR 458 Query: 454 IPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL 513 P+DV+++A T DL +E+ +F R L+Y + I +PPLR R I AL+ + Sbjct: 459 RPVDVRLVAMTNRDLRQEIEKGKFRRDLFYRIGVVTIEVPPLRERGSDILALLEHFSDHF 518 Query: 514 EKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL---F 569 K ++ DAL L S WPGN EL + ++ + L + + V DLP L F Sbjct: 519 AKETGRPKMSFGADALKMLASYRWPGNVRELRNAVQRIYLVCSDPVVTVKDLPPELRDDF 578 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E D + + S +E AI G + ++A+LGI R TL+RKM+Q+ Sbjct: 579 DESEEDSLESILSGNSGDLESIEASAIRRTIAAEKGNLTRVAAVLGISRPTLYRKMRQYR 638 Query: 630 ID 631 ID Sbjct: 639 ID 640 >UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGL0_DESAH Length = 662 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 164/642 (25%), Positives = 279/642 (43%), Gaps = 38/642 (5%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 D + I I SW+ L + H+ G ++ +R ++++ Q +E E Sbjct: 23 DSQSIRTDILVSWKHSKNLGIDAHKGLHHKGDG---DALLKRSAELVSVAQPFMEVINEI 79 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +A + +D L GDP L++ GF G + IGT A L+ + Sbjct: 80 IAGSGFRIDCIDHEGFFLCSCGDPTLLKESEYNGFVTGCDVSIEAIGTNAAGLSLSLKKP 139 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 V+ +H+ L N ATP++ L G + + L LT +IA+ + N Sbjct: 140 VQVFGPEHYNINLHNLNCSATPIYTPDSELVGILNILSYDTPQNRQTLGLTTSIAKAIEN 199 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L + ++LN ++E + GVI+ ++ G + N +A +L + + + Sbjct: 200 QLALTRTVTSLKVSNSELNTIMEYLPQGVIALNKLGEVDRYNKKALEMLSIPQKSGIDQR 259 Query: 248 ITELL-TLPAV-LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 +L L A+ L + +++ +H A + F+ +++ G +++L Sbjct: 260 KNQLKKNLSALDLSRELRRQKEKEHTIAVGSRKKSFVVNAHSIE-----NGERTLVMLED 314 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 ++ L Q + S+TF + + A + VLL GE G GK L + Sbjct: 315 TGRIMSLSAVQSNRTSYTFNDITGRCAGIIKAKELATMVAPTDSSVLLVGESGTGKELFA 374 Query: 366 QAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELA 415 QAIH S R+ P++A+NC EL+G A F G E G+ RLE A Sbjct: 375 QAIHASSCRSNNPFVAINCGAIPADIIESELFGYEPGA--FTGA----REAGKAGRLETA 428 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL+++E + + Q LL+ + R+ IP+D+++I+ + DL Q Sbjct: 429 SGGTLFLDEVEAMPLSFQVKLLRAFSSKSMVRVGGVNEIPLDLRIISASKVDLIEEANQG 488 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSC 534 RF LYY + F I IPPL R G I L L+ L + + + D+D L S Sbjct: 489 RFREDLYYRIATFPILIPPLNKRGGDIRLLAKQFLKQLSAEYLRSDIYADNDFFEALQSY 548 Query: 535 AWPGNDFELYSVIEN-LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 W GN EL + IE + + D ++ + LP+ L E T+L+ +K Sbjct: 549 PWRGNVRELRNTIERAVVIGLDQQQLTPAQLPQSL-KEYWISGKLRQHAKTTLNHHPTDK 607 Query: 594 EAIINAAQVT---------GGRIQEMSALLGIGRTTLWRKMK 626 ++++ A+ T G I + LGI R+TL++K++ Sbjct: 608 KSLLKIAEDTTIAMVLEEEKGNISRSAKRLGIARSTLYQKIE 649 >UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WJF2_BACSK Length = 511 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 140/467 (29%), Positives = 227/467 (48%), Gaps = 30/467 (6%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 V +L + LL E R L ++E+MDD V DE+ + INA++ ++ L + A Sbjct: 54 VKKQVLANVLLEELKRTNAFLQTMMEAMDDAVTMVDEEQRIIQINAKSEQLYALTSCAIA 113 Query: 245 GRAITELLTLPA-VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ----GTSF 299 G+ + + A VL +K P+ H + + ++ P+ E + G S Sbjct: 114 GKPLRDYFDEEALVLWSVMKDKQPVVH---QYNQPKPGLHVIVNTVPVFEGEACVGGLSI 170 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDP---------QTRRLIHFGRQAARSSFP 350 + V ++ + ++S+ + H +D+P RR IH + A+++ Sbjct: 171 ERDITDVVRLNEELSSKTASLHH-LNTTSEDEPFQKIIGRSEPIRRAIHLAAKVAKTTAN 229 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENG 407 VL+ GE GVGK L ++ IH S+RA P+IA+NC A E G G T G Sbjct: 230 VLITGESGVGKELFAEGIHQASDRAEKPFIAINCGAIPAALFESELFGYVQGAFTGAAKG 289 Query: 408 RLSR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 L+ A GGTLFL+++ + ELQ LL+V+++ R+ IP+DV+++A T Sbjct: 290 GKKGKLDAAKGGTLFLDEVGEMPAELQVKLLRVLEERAYYRVGGHEAIPLDVRIVAATNR 349 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDD 525 DL +V + RF YY LH I+IPPLR R +P LV + L+ +R+ + K+D Sbjct: 350 DLEKMVAEGRFREDFYYRLHVISISIPPLRERIEDLPELVQSFLQEFAQRYEKPVPKLDP 409 Query: 526 DALARLVSCAWPGNDFELYSVIENLA-LSSDN-GRIRVSDLPEHLFTEQATDDVSATRLS 583 + L L + W GN +L ++IE + L+ D+ G + LP E + L+ Sbjct: 410 EVLYALRTQKWEGNIRQLRNLIERIVILNGDHEGSVHWYHLP-----ESYQQKLKHMPLA 464 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + E+ IINA + T G + LLGI R TL+ K+K + + Sbjct: 465 SKDKPKKDERMEIINALEKTYGNKSAAAKLLGISRATLYNKLKHYKL 511 >UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Ralstonia pickettii 12J RepID=B2UEU9_RALPJ Length = 687 Score = 188 bits (478), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 162/656 (24%), Positives = 294/656 (44%), Gaps = 52/656 (7%) Query: 13 SPLIATSWERCNKLM-----KRETWNVPHQAQGVTFASIYR--------RKKAMLTLGQA 59 +PL TSW+R + + +R T F+++ + + + + Sbjct: 28 TPLSGTSWQRQHAAVIEQSHRRSTTYGLQVTDNPDFSALSKAALSLAIEQNRTLYAYALP 87 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 +E +E ++ + + D IL GD L++ + + G +E + GT + Sbjct: 88 VMETLYEQISHHHNIVLLTDAQGVILHAQGDKDFLEKADRVALSLGVTWSERLRGTNGIG 147 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 A + G V+ A++H+ V A PLFD+ G++TG + ++ A + L Sbjct: 148 TALVEGAPVQVSANEHYLGVNHVLNCSAVPLFDASGKVTGVLNVSGDPGNFPAHTMALVR 207 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 A ++ N L + HL+ L+ ++ +G++S+ G + +N A L L Sbjct: 208 MSALQIENQLFAAANPDCITLHLHSRPELIGTLMEGMLSFGLDGRYRAVNRSALFQLGLT 267 Query: 240 ATASQGRAITELLTL--PAVLQQAIK-QAHPLKHVEATFESQH------QFIDAVITLKP 290 +A G + LL L PA+ PL+ A S + Q D L+P Sbjct: 268 PSALAGHTLESLLGLSVPALFDHYRSATPDPLRVHAANGISLYAKVSIRQRTDCGSLLRP 327 Query: 291 I----IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 + + + S PV R TS LG++ DP+ R+I ++ Sbjct: 328 LSADKVGQEAESRAGTASPV---RARATSGLGQLD-------TGDPEIARVISKLKKFNG 377 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD--- 403 P L+ GE G GK LL+QAIH +S R AGP++AVNC + + E G + Sbjct: 378 RDIPTLIIGETGTGKELLAQAIHEDSPRCAGPFVAVNCASIPETLIESELFGYEEGAFTG 437 Query: 404 -NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 G L ++ A+GGTLFL++I + + LQ+ LL+V+++ ++T L + + IP++V ++ Sbjct: 438 ARRRGSLGKILQANGGTLFLDEIGDMPLTLQARLLRVLQERIVTPLGSAKAIPVNVALVC 497 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T +L ++ + F LYY L+ + +PPLR RR A++N L + + R + Sbjct: 498 ATHRNLRDMIARGTFRDDLYYRLNGLLVKLPPLRQRR-DFEAVLNRLL--VGEHGGQRFR 554 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT-----EQATDDV 577 + + L L + WPGN +L +++ + + ++ I++ DLP+ EQ + Sbjct: 555 VAPEVLRLLKTYDWPGNIRQLVNLVRSAMVMAEGDEIQLDDLPDDFLEDVRHREQPAQEP 614 Query: 578 SATRL----STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 A + + + +E I + GG + + LG+ R ++RK++ G Sbjct: 615 PAHDMLPVSADQATLDLLESSLIRQVLKSNGGNVSAAARALGVSRNRIYRKLQSLG 670 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 159/563 (28%), Positives = 256/563 (45%), Gaps = 38/563 (6%) Query: 89 GDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCAT 148 GD + L L F G +E +GT A+ A SG A+ +HF + +W A Sbjct: 138 GDYRALICAEKLNFGPGANWSEASVGTNAIGTALASGVALTVSGLEHFCEGHQSWICSAA 197 Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+FD G + G I ++ P LPL + AR + + LL + +N + + Sbjct: 198 PIFDLSGTMIGCIDISGPTTSIHNIPLPLAINGARIIESQLLKKQANELKQQSVNLVTSA 257 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 ++ G++ D G ++ +N AA +L + + G + + L++ +K++ + Sbjct: 258 FNAVATGMMVLDPNGIIKTVNPTAAVLLNMSQESLIGCSAQICFEIETALER-LKKSPEI 316 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE-QMRQLMTSQLGKVSH-TFAH 326 Q A + PI G+ LLL E Q R M + +H F Sbjct: 317 HATMGVTVKWKQRASANARVYPITTPNGSLGCLLLVLYESQNRPHMALPMETKTHDPFNA 376 Query: 327 MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC-- 384 + + +Q A +L+ GE G GK ++++A+H S RA P++A+NC Sbjct: 377 VIGVSSAILSAVETAKQVAPQMTSILITGESGTGKEIMAKALHRASPRAQKPFVAINCGA 436 Query: 385 --------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 EL+G A A F G +R G + E A+ GTLFL++I + ++LQ L Sbjct: 437 IPHELIQSELFGYAQGA--FTGANR----GGNPGKFEQANEGTLFLDEIAEMPLDLQVNL 490 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+++ +TR+ IP+DV++++ T+ +L L+ Q F LYY L +I +PPLR Sbjct: 491 LRVLEENSVTRVGGNHPIPVDVRILSATSKNLKELILQKTFREDLYYRLKVVKIDLPPLR 550 Query: 497 MRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR-LVSCAWPGNDFELYSVIEN-LALSS 554 R + L + + L K + +K D + R L + WPGN EL IE +AL S Sbjct: 551 QRGRDMDLLAEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGNVRELKHAIEGAIALMS 610 Query: 555 DNGRIRVSDLPEHLFTEQATD---DVSATRLSTS----LSFAEVEKEAIINAAQVTGGRI 607 + LF + D ++ T LS L+ VEKE I A G I Sbjct: 611 G----------DTLFGDALCDSPGNLQETALSVPDKERLNLMRVEKETIQLAYARFSGNI 660 Query: 608 QEMSALLGIGRTTLWRKMKQHGI 630 + LGIGR TL+ K+ ++ I Sbjct: 661 SHTAKALGIGRNTLYAKLLKYKI 683 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 188 bits (477), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 162/595 (27%), Positives = 269/595 (45%), Gaps = 43/595 (7%) Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 L+ +E + + L + D CI+ G+P+ + + + F G +E GT A+ Sbjct: 86 LDHVYEKIQHTKHLLTLTDSHGCIVYLRGEPRVIDKAHLMQFTLGADWSEESAGTNAIGT 145 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTL 179 A + ++ + +H+ Q +W A P+ D G L G I P E P TL Sbjct: 146 AIYLQKPIQIFSYEHYAQGAHDWVCSAAPVHDPCTGELLGIIDFTAPHEYAQ----PHTL 201 Query: 180 AIAREVGNLLLTDSLLAETNR-HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +AR ++ +L E +R L+ N L E W + L F R LR+ Sbjct: 202 EMAR-----IIALNLQTEYSRISLDTKNYLYEEYAKVRNRWPGEALLLF-----DRTLRI 251 Query: 239 DATASQGRAITELLT--LP-----AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 A + R L P AV++ A+ + H + +++ +T P+ Sbjct: 252 IAETPEARNFLCNLQHQFPGCSPRAVIRDALLACGGVTHTIELLDPKYK-----LTSMPV 306 Query: 292 IET-QGTSFILLLHPVEQMRQL----MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 + Q I+LL Q R +T V+H + + +R I + A Sbjct: 307 LRNGQQVGCIILLARDSQSRHTRGHRVTDNAINVNHPWRTIIGSSRVIQRAIQRAQIVAA 366 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD----RT 402 ++ PVL+ GE G GK L ++AIH S R P++AVN +A E G + Sbjct: 367 TNAPVLITGESGTGKELFARAIHEASPRGKQPFVAVNIAALPRELIASELFGYEPGAFTG 426 Query: 403 DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G+ + E A+GGTLFL++I + +ELQ LL+V+++ ITRL + +DV++IA Sbjct: 427 AHPRGKKGKFEEANGGTLFLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRIIA 486 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL- 521 T +LA V F L+Y L+ EI +PPLR R +P++ + L ++ + Sbjct: 487 ATNQNLAQRVANGEFRLDLFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDKSVE 546 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-----QATDD 576 + D + L WPGN EL +VIE + S+ I V+DLP++L + +D Sbjct: 547 RFDPEVLNLFKQYHWPGNVRELQNVIEYSVIFSETDSITVNDLPDYLTRSIFKNLEVSDK 606 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + S + E+ I + T G I +++ L RTT++RK+K +G++ Sbjct: 607 PIYDTIEMSDAIENEERRLIAYWLEKTNGNISQVARQLRRSRTTIYRKIKHYGLN 661 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 187 bits (475), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 158/639 (24%), Positives = 280/639 (43%), Gaps = 33/639 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGV---------TFASIYRRKKAMLTLGQAALE 62 + +I S++R K +N+ Q G F ++++ + LE Sbjct: 20 LQKIIDASFKRSKK------YNITPQVDGSPESTKLTEQAFRQRIKKQQLFYDTTKEQLE 73 Query: 63 DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 + ++ + + D IL GDP + E +GTCA+ L Sbjct: 74 NLYDLLKGTGFCMIFTDNEGYILYLVGDPDLQAHFAHRRCIPRYRWTEKDVGTCAIGLTL 133 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAI 181 + ++ Q + + ++P+F G+ L G I L+ E + L Sbjct: 134 LEKISIFLPGTQMYATTAKKISNASSPIFSPDGKELLGVICLSGYSENMHVHTIGLVSQA 193 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 ++ + + L + E + A++ES G+++ D+QGN+ N +A +L + A Sbjct: 194 SKNIRSRLQSLEKQQEIAIKNQYMTAIIESKSSGIVTVDQQGNIVQTNHKARNLLAIKAD 253 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII--ETQGTSF 299 A + +T + + +++ + E S+ + +L PI E Q Sbjct: 254 A-RDNLLTTYIGNSLNIADCLERGRGFRAREIV--SKKTGVSYFASLDPIRLEEEQLVGG 310 Query: 300 IL-LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 I + E +R+ + + TF + D P + +H R +A+++ VLL GE G Sbjct: 311 IFTFVEKNEALRRAVKLIGTQAPFTFDSILGDSPALKSALHLARISAKNTASVLLYGETG 370 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLEL 414 GK L +QAIHN SE G ++A+NC L E G + + GR ++EL Sbjct: 371 TGKELFAQAIHNASEHKNGSFVAINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIEL 430 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A+ GTLFL++I + E+Q LL+V++ G I R+ R IP+++++I+ T DL +++ Sbjct: 431 ANNGTLFLDEIGDMPFEMQVKLLRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDV 490 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS- 533 +F LYY + I IPPLR R+G I LV + +F R ++ +S Sbjct: 491 QQFRADLYYRISTLRINIPPLRERQGDILKLVQYFIDRHIIKFDRRKQVLPSQTRLAISK 550 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ--ATDDVSATRLSTSLSFAEV 591 +WPGN +L S E +++G + LPEH + + ++ + + EV Sbjct: 551 YSWPGNIRQLESATERAIYLAEDGVL----LPEHFAISDLFSNTNKEVVKVVGTQTLEEV 606 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E + I I + + LGI R TL+RK+ ++ I Sbjct: 607 ESQIITETLAFFDNNISKTAQSLGISRPTLYRKIDKYRI 645 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 145/481 (30%), Positives = 240/481 (49%), Gaps = 50/481 (10%) Query: 177 LTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL 236 L +AI +E LL E R +L+A+L SM + + D G ++++N +R+ Sbjct: 100 LMMAILKEKEELL-------EFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRIT 152 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF----IDAVITLKPII 292 + G+ I E A+ A LK + F + + D V PI+ Sbjct: 153 GIPEKERIGQNIFEASPDGAL-------ATVLKTGKVVFGQRTKVGGSNADVVSNSAPIV 205 Query: 293 ---ETQGT-----SFILLLHPVEQMRQL------MTSQLGKVS---HTFAHMPQDDPQTR 335 + +G F +++ +E++++ +T +LG+V+ ++F + D P+ R Sbjct: 206 VDGKMEGAVCVFQHFTDIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELR 265 Query: 336 RLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE 395 + I ++A+S+ VL+ GE G GK LL+ AIH S R P+I VNC D L E Sbjct: 266 KCITLAEKSAQSNSTVLILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESE 325 Query: 396 FIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 F G G T ++ + ELAHGGT+FL++I + + LQ+ LL+V+++ R+ + Sbjct: 326 FFGYAKGAFTGAVKSKIGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQ 385 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 I +DV+VIA T +L L+ Q RF LYY L+ EIT+PPLR R+ +PALV++ + S Sbjct: 386 TIKVDVRVIAATNRNLRELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITS 445 Query: 513 LEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL--F 569 L ++ +K I DA L S WPGN EL +VIE + +++D + + +H+ F Sbjct: 446 LNRKLGKNVKGISKDAEEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQF 505 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ---EMSALLGIGRTTLWRKMK 626 + DV + ++E+ I A G ++ + L I TL+ K+K Sbjct: 506 RMSSERDVDL------MPIEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLK 559 Query: 627 Q 627 + Sbjct: 560 K 560 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 128/431 (29%), Positives = 226/431 (52%), Gaps = 13/431 (3%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 QL A+L+++++G+I+ D G + N A + + G+ + +LL + + +K Sbjct: 83 QLRAVLDTVNEGIIAIDSHGTISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLK 142 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVS 321 + E + + + + + +PI + G + +L P+ ++R+L+ + Sbjct: 143 TGESYNNQEIIINVEGRRLHYLTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSL 202 Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 ++F + + R ++ ++ AR+ VL+ GE G GK L ++AIH ES R P++ Sbjct: 203 NSFNDIIYTSEKMRFVVEMAKKVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVP 262 Query: 382 VNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALL 437 +NC ++ L E G G T + G+ LE AH GTLFL++I L LQ+ LL Sbjct: 263 LNCAAVPESLLESELFGYVEGAFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLL 322 Query: 438 QVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRM 497 +V+++G + R+ + IP+D+++IA T +L +V + +F LY+ L+ F + IPPLR Sbjct: 323 RVLQEGKVRRIGGQEEIPVDIRIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRE 382 Query: 498 RRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDN 556 R I L + L + KR + +I ++AL +L + +WPGN EL +VIE +D+ Sbjct: 383 RVEDIEVLTYHFLNTFAKRRGIQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADD 442 Query: 557 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 G I D+ L Q T V+ T L +++ +VEKE I A + I++ + LG+ Sbjct: 443 GVIEAKDI--ILDNPQNTYFVART-LEEAVN--QVEKELIERALKQYPS-IRQAARSLGV 496 Query: 617 GRTTLWRKMKQ 627 TTL K+K+ Sbjct: 497 THTTLRNKIKK 507 >UniRef50_Q6AR13 Related to sigma54-dependent transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6AR13_DESPS Length = 630 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 163/595 (27%), Positives = 268/595 (45%), Gaps = 41/595 (6%) Query: 51 KAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAE 110 K +L A + + ++ M+P E + D IL G + + + F+ G E Sbjct: 57 KELLGAIAATINEFYDLMSPEEFLVGFADSEGYILHLAGGDRARETSADRQFSLGYRWTE 116 Query: 111 GIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQT 170 +GT A SL +++ H+ + A P+F +G L G++ + Sbjct: 117 KDVGTTATSLCLRLKVSIQLKGRDHYCKQAQGLLSSAAPIFGHQGVLLGSLCIFGDKSLI 176 Query: 171 TAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINA 230 L + + AR + + E + L+ ++E+ G++ D +Q IN Sbjct: 177 HPHTLIMITSSARSIERHMRLMRWNTELISNAGFLDNVIEAAGTGLLIIDTDLIVQKINY 236 Query: 231 QAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 QA ++L +D +G++I+ L L L + K+ E + + I V + +P Sbjct: 237 QAKKILNVDDL--KGKSISSLSGLQLDLDSIFENPSVWKNRECHIQHNKKDIHLVYSAQP 294 Query: 291 IIETQGTSF--ILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 ++ +L + +R+L+ G K TF + P + + ++A+ S Sbjct: 295 VLSKNDKPLGAVLNITKFSNIRKLIDKISGIKPYFTFDSLIGSSPAFTKAVDLAKRASHS 354 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFI 397 VLL GE G GK L +QAIHN ++ A P++ +NC EL+G A A F Sbjct: 355 EATVLLLGETGTGKELFAQAIHNGAKGADKPFVPINCGAIPGELLESELFGYAEGA--FT 412 Query: 398 GGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 G R GR + LA+ GT+ L++I + ++Q LL+V++ V+ + AR+ + + Sbjct: 413 GAKR----GGRSGKFILANDGTMLLDEIGDMPHDMQVKLLRVLQSKVVQPVGARKPLQTN 468 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR-RGSIPALVNNKLRSLEKR 516 ++IA+T DLA + NRF R LYY L+ +I IPPLR R I AL + LR Sbjct: 469 ARIIASTHVDLAEAMLHNRFRRDLYYRLNILQIKIPPLRERGEVDIKALAHYFLRKNNPE 528 Query: 517 FSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 F + DA+A LV+ WPGN EL + I+ + I V DL Sbjct: 529 F----QFTADAIAGLVAYHWPGNVRELENTIQRALHVCKDQTITVKDL-----------G 573 Query: 577 VSATRLSTSLSFA----EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 +S LS F ++EK+ I + T + E + LGI R TL+RK+KQ Sbjct: 574 LSKQDLSKKAGFQGTLLDMEKKVIAETLRETKSNMAEAARRLGISRATLYRKVKQ 628 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 185 bits (469), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 128/438 (29%), Positives = 212/438 (48%), Gaps = 22/438 (5%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI---------TELLTLPAVL 258 +L+S+++GVI+ + ++N A +L L SQG + + + ++ Sbjct: 43 ILDSLEEGVIAIGLDKKVLYLNRAAREMLGL----SQGEVFGMDCQKAMRSSVCSARCLI 98 Query: 259 QQAIKQAHPLKHVEATFESQHQ---FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 ++ I+ P ++ E + +H+ + L + + + H V Q+ +L Sbjct: 99 EKTIESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKE 158 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G+ + F + + R L A+S VL+ GE G GK L++ AIH S R Sbjct: 159 LKGR--YAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRK 216 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 GP+I VNC + L E G G T + + R ELA GGTLFL++I ++ + Sbjct: 217 DGPFIKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASM 276 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V+++ R+ + + +DV+VIA T DL ++ F R LYY L + + Sbjct: 277 QVKLLRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFL 336 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR RR IP L+++ L F + + +A L++ ++PGN EL ++IE+ Sbjct: 337 PPLRERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAV 396 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 L S I V +LP L + LS S + +E I A + T G + + + Sbjct: 397 LLSTGRTIGVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAA 456 Query: 612 ALLGIGRTTLWRKMKQHG 629 LLGIGR+TLWRK+++ G Sbjct: 457 KLLGIGRSTLWRKLREMG 474 >UniRef50_A1HSK4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSK4_9FIRM Length = 628 Score = 184 bits (467), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 228/469 (48%), Gaps = 30/469 (6%) Query: 176 PLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV 235 P + A E+ +LT + E N ++ ++ S+D G+I+ D G + +N +A R+ Sbjct: 170 PEGIRHALELSRQMLTIQRMEEAN--ARRIETIINSVDYGIIAVDNAGAVTALNREARRL 227 Query: 236 LRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII--- 292 L L A + L + + + + + E + VI PI Sbjct: 228 LALAHGAPDNHPL---------LVKLRRHGQLGERLTGSVERLEDGRELVINYLPITIGG 278 Query: 293 ETQGTSFILL----LHPVEQMRQLMTSQLGKVS-HTFAHMPQDD-PQTRRLIHFGRQAAR 346 ET G L +E+ + ++ G+++ HTF + + P R +I R+ A Sbjct: 279 ETAGAVATLQELRQFQDIERRTRQELARRGRLARHTFLELEETAAPAMRAVIDEARRFAA 338 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD 403 +L+ GE GVGK + AIH S R GP++AVNC L E G G T Sbjct: 339 VDATILIQGETGVGKEYFAHAIHAASPRRYGPFVAVNCAAIPATVLESELFGYAEGAFTG 398 Query: 404 -NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G++ E AHGGT+FL++I +A ELQ+ LL+V+++ I R+ R+IP+D++VIA Sbjct: 399 AKKGGKVGLFEQAHGGTIFLDEIGEMAEELQARLLRVLQEHEIYRIGDDRVIPVDIRVIA 458 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T DL +V RF LYY L + +PPLR R+ IP V + ++ ++ Sbjct: 459 ATNRDLRAMVAAGRFREDLYYRLDVLALEVPPLRARKQDIPLFVRKFIDEFNHKYRRAVQ 518 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 IDD+ LA L + WPGN EL++V++ L + I +++ + L + D A Sbjct: 519 GIDDEGLALLAAYDWPGNVRELHNVVDRLMALAAGPVITATEVRQCLERRLRSSDRPA-- 576 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E AI +A G Q+ + LLGIGR+TLWRK+++ GI Sbjct: 577 ---APGMKAAEAAAIRDALARANGNKQQAARLLGIGRSTLWRKLRELGI 622 >UniRef50_O31551 Acetoin dehydrogenase operon transcriptional activator acoR n=4 Tax=Bacillus RepID=ACOR_BACSU Length = 605 Score = 184 bits (466), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 164/639 (25%), Positives = 264/639 (41%), Gaps = 86/639 (13%) Query: 16 IATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 IA SW RC K + P Q ++ LT + LE + E Sbjct: 29 IAESWHRCKKAEVNPYLEKGPKVLQQTELDQQSKKHSFFLTTAKPYLEKLLPAIKEMEMM 88 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 ++D +L+ +G P+ L + + F +G E +GT A+ A + V + Sbjct: 89 ALLIDSDGVVLALDGHPRALYEAKRINFVEGACWTETAVGTNAIGTALHISEPVAIQGSE 148 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 H+ W A P+ G L G I ++CP L + AIA L S Sbjct: 149 HYSIASHLWNCSAAPIHHEDGSLAGVIDISCPAAGAHPHMLGIATAIAYAAERELAAKSR 208 Query: 195 LAE-------TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 E R + + +L + +IS A+ +R QGR Sbjct: 209 EKELELISRFGERAASSVPMVLCNTKQHIIS-------------ASMPIRTSMPDWQGRH 255 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 + EL ++ A+ I GT F L Sbjct: 256 LYELKERGYSIENAV----------------------------TIGDGGTCFYL------ 281 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + Q K + F + +++ ++ +AA + V L GE G GK + ++A Sbjct: 282 ------SEQKKKKAFRFNGVIGQSGRSQAMLMHLERAAATDASVCLSGETGTGKEVAARA 335 Query: 368 IHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 +H SER GP++AVNC EL+G A A F G R NG + A+ Sbjct: 336 LHENSERRHGPFVAVNCGAIPSDLIESELFGYAEGA--FTGAKR----NGYKGAFQKANQ 389 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I ++ +Q ALL+V+++ IT + + IP+D++VIA T DL L E + Sbjct: 390 GTLFLDEIGEISHSMQVALLRVLQERKITPIGGTKEIPVDIRVIAATHCDLRELAENGKI 449 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 L+Y LH + I +PPLR R IP L +++ + D L WP Sbjct: 450 REDLFYRLHVYPIELPPLRDRTEDIPDL----FEYYKQKNHWPGDLPSDFCNVLKQWKWP 505 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS---LSFAE-VEK 593 GN EL++V E L++ +GR+R LP L SA + + L+F E ++K Sbjct: 506 GNIRELFNVFERLSIRFPDGRLRDESLPA-LLEAAGLPASSAEKKPAAAGVLTFREQIQK 564 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + +I A + G + + + + GI R+T ++++K+ + A Sbjct: 565 DMMIKALESAKGNVSQAAKISGIPRSTFYKRLKKFNLSA 603 >UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 Tax=Rhizobiales RepID=A8IDE1_AZOC5 Length = 647 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 167/649 (25%), Positives = 282/649 (43%), Gaps = 60/649 (9%) Query: 11 GISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKK---AMLTLGQAALEDAWEY 67 G+S + SW+R L +A I+RR+ +++ + AL+ + + Sbjct: 22 GVSASLLASWQRSRTL---GVGAGRAEAPLADEPEIFRRRSQNASLVGAARPALDRSTRF 78 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +A + + D + I+ GDP+ + + G E IGT A+ A G++ Sbjct: 79 LADAASMMILADASGFIVETAGDPRVMDKGRRNHLETGGRWDEATIGTNAIGTALADGRS 138 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +HF + + W ATP+ G L G + ++ P L L +AI +E+ Sbjct: 139 VEICGAEHFCEEVQRWTCAATPVRHPLDGELLGVVDISGPAASFNPQSLSLAVAIGQEIE 198 Query: 187 NLLLTDSLLAETN--RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 L + + RH ++ S D ++ D +G L +A + Sbjct: 199 ASLGRAAKMEHEVLLRHFVSKRSIWLSED--ILVVDRRGMLVHAAHKAG-------STGS 249 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 G A + A Q+A + + A+ E + DAV+ +++LH Sbjct: 250 GLAGDIRQMIGAASQEAWEANCRRRFPNASLEVVKRD-DAVV-----------GCLIVLH 297 Query: 305 PVEQMRQ---LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + + G+ F + +DP + R+ A + P+L+ GE GVGK Sbjct: 298 TTRRRSASPAAVPRPAGEDGLAFEQILGNDPALHAVRERARRLAANRLPILIEGETGVGK 357 Query: 362 ALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSR 411 L ++AI S GP++ VNC EL+G A A F G D E+GR + Sbjct: 358 ELFARAIKGASPDPDGPFVPVNCGGMARELIASELFGYAKGA--FTGAD----EHGRAGK 411 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 +E A GG L L++I + ++LQS LL+V++ GV+ R+ ++++++A T DL Sbjct: 412 IEKADGGILCLDEIGEMPLDLQSYLLRVLEDGVVYRVGEHEGRRVNIRILAMTNRDLLAE 471 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALAR 530 VE RF R LYY + A + IPPLR R I L + R + L AL R Sbjct: 472 VEAGRFRRDLYYRIAAARLRIPPLRERGADIVTLAQTFAAAAASRLGRSSLVFSAAALDR 531 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS--- 587 + + +WPGN EL +V++ L ++ R+ SDLP + + +R + S Sbjct: 532 MQAYSWPGNIRELRNVVDTLVALAEGDRLNESDLPPEVLAAPSPSRAPISRPLNNGSEGS 591 Query: 588 -------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+ AI+ GG + E + LGI R+TL+ ++ ++G Sbjct: 592 PPPPGADLKAAERAAILAQVTACGGNLTEAARRLGIARSTLYVRLAEYG 640 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 158/631 (25%), Positives = 284/631 (45%), Gaps = 41/631 (6%) Query: 16 IATSWERCNKLMKRETWNVPHQAQ------GVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 IA SWE L P Q+Q T A + K +L+ ++ + Sbjct: 41 IAHSWETSKDLGVN-----PFQSQINEIINDQTLAIRLKHNKQLLSYASPRIQQLLDLFD 95 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + L I D+ IL G+ L++ G E GT A+ + + Q+ + Sbjct: 96 DSKTVLSIADKDGTILKSVGEKNVLKRAEKRYIFAGGTWTEKSAGTNAVGMVLRTKQSSQ 155 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 + +HF + + +W A P+ + L G + LA + LA A+ + L Sbjct: 156 VLFSEHFCENVHDWYCVAFPVLAPFTKELLGIVNLAGNASDVHRHSIGYALAEAKNMA-L 214 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L RH L+ LE MD V+S D + N A R R S + Sbjct: 215 SLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQILTRNEGANRSERFQNETSIA-SF 273 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVE 307 EL L A ++ +Q + + + ++Q +++ P+ + ++ L + Sbjct: 274 PELKALVANVRTNGQQIVNEQIQDGSTNKRYQ-----VSIYPVRFQDHIYGVVIFLQQDQ 328 Query: 308 QM--RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 ++ ++ + + ++F++M P + L+ +AA +L+ GE G GK +L+ Sbjct: 329 RVVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVLA 388 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLF 421 QAIH S R P++A+NC + L E G G T ++ G + E A+GGT+F Sbjct: 389 QAIHQASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTIF 448 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + ++LQ LL+++++ V+TR+ IP+DV+VI+ T DL V++ F L Sbjct: 449 LDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFREDL 508 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGND 540 YY L ++ +PPLR R IP L+ + L +L + F ++ + + L L WPGN Sbjct: 509 YYRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILERYHWPGNI 568 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL +V++ D I LP+ +++ +D E EK+ ++ A Sbjct: 569 RELKNVLQQAMFVMDGDVIHPHHLPDSFYSQTQSD--------------EYEKQKLLRAL 614 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + + +A L + R T++R++K++ ++ Sbjct: 615 EQQEGNVTKAAASLNMSRATIYRRLKKYRLE 645 >UniRef50_D0BR12 Nitrogen regulation protein NR(I) n=2 Tax=Fusobacterium RepID=D0BR12_9FUSO Length = 442 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/446 (27%), Positives = 223/446 (50%), Gaps = 35/446 (7%) Query: 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVLQ 259 N L + +S+ DG++ D+ G + ++N R+ ++D + + + ++ L V++ Sbjct: 8 NNLKNIFDSLYDGILIIDKSGIVVYVNPSYTRITKIDKEDIENKRLLDVRKDSHLTKVMK 67 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMRQLMTSQL- 317 IK+ + + I ++ + PIIE + I +L+ ++ +++ + L Sbjct: 68 TGIKEIGQYRTINN--------IKYIVNMVPIIEEGKIVGGISVLNDMQDIQKNLDKTLA 119 Query: 318 ------------GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 K + F + D + L + ++ + + VL+ GE G GK + + Sbjct: 120 ILDNLKEKVKILNKSKYNFDSIIAIDKSSVELKKYSKKISLNDSNVLITGESGTGKKVYA 179 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT---DNENGRLSRLELAHGGTLFL 422 AIHN S+RA P+I+VNC + L +E G ++ D++ ++ L+L GGTLFL Sbjct: 180 HAIHNGSDRANYPFISVNCTTFSKENLEKELFGLEQDVFYDDKRRKIGLLQLVDGGTLFL 239 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I L LQ+ LL V+++ + ++ + IP+D ++I TT +L LV Q +F + LY Sbjct: 240 DEISELDYSLQTKLLHVLQEKTLIQVGGLKEIPVDFRLICTTNKNLLELVNQGKFRKDLY 299 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y + + + PL+ R+G IPAL N L+ L ++ + +D + L++ W GN E Sbjct: 300 YRISVIPLNLLPLKSRKGDIPALANKFLKDLSIKYRREISFSEDVIKILLNYDWSGNIRE 359 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI---INA 599 L +++E L SD I V DLP++L + + S L+ L E EK+ I +N Sbjct: 360 LRNIVEFLFNISDGTVITVEDLPDYLHLNKKIE--SYKNLNDYLR--ECEKKYIRKVLNN 415 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKM 625 + ++ + LLGI TL+ K+ Sbjct: 416 FENNLEGKKKAAKLLGISIATLYNKL 441 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 127/439 (28%), Positives = 221/439 (50%), Gaps = 26/439 (5%) Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVL--RLDA-TASQGRAITELLTLPA--VLQQA 261 A+L+S+++GV++ + ++N A +L R D+ T S R + A VL + Sbjct: 39 AILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAKT 98 Query: 262 IKQAHPLKHVEATFESQHQFIDA-----VITLKPII--ETQGTSF--ILLLHPVEQMRQL 312 ++ P++++E + +DA V+ L + ++ G F + + H + Q+ L Sbjct: 99 VETGEPIRNMEISL------VDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVAL 152 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 G+ ++F + + + L A+S VL+ GE G GK L++ A+H S Sbjct: 153 KEELKGR--YSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENS 210 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 R GP++ +NC + L E G G T R R ELA GGTLFL++I ++ Sbjct: 211 PRREGPFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEIS 270 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 +Q LL+V+++ R+ + + +DV+VIA T DL +E+ F + LYY L Sbjct: 271 PSMQVKLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIP 330 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIE 548 +T+PPLR R+G +P L+ + + ++ + +A+ L++ +PGN EL ++IE Sbjct: 331 VTLPPLRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIE 390 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 + AL ++ RI + LP L Q+ + VEKE I A +GG + Sbjct: 391 HAALLCNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVS 450 Query: 609 EMSALLGIGRTTLWRKMKQ 627 E++ L +GR+TLWR++K+ Sbjct: 451 EVARKLSMGRSTLWRRLKE 469 >UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Clostridia RepID=B8G1B8_DESHD Length = 628 Score = 182 bits (462), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 168/630 (26%), Positives = 284/630 (45%), Gaps = 43/630 (6%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA---LEDAWEYM 68 I+PLI SW+R L V + + + + +++ L +AA L ++ + Sbjct: 20 IAPLIYRSWQRS--LAHNINPAVISNNKFLNDSGLRELRESREDLIRAAGSVLPFLFQLL 77 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 ++ + D+ A IL GD L + + + G E + GT A+ A I G V Sbjct: 78 NSSNFSILLGDKDAFILESLGDGPFLSKAQRIFLSPGGNWGEDVKGTNAIGTALIEGMPV 137 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 H+ Q A P+ +G + G I ++ + L + L AR + Sbjct: 138 TIQGMDHYVQENHFLTCSAAPIHGLQGEIIGVIDISAEIGNQHCT-LDIALVGARLIEQN 196 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L ++ E + ++ + DG +S D G + +NA A ++ GR + Sbjct: 197 LRHLTIERELKFYQQGSKLAVDLLKDGCLSIDRHGMITQVNATGASLIGRKKDDLIGRHV 256 Query: 249 TELLTLPA--VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 T++L P VL Q L+H + H+ V + I + G+S + Sbjct: 257 TDVLGAPKGWVLNQ---DTLDLRHKDG---KGHEL---VTHFQRISDNSGSSLGAV---- 303 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + Q++ L +S + + ++R ++ +AA++ F VLL G+ G GK ++++ Sbjct: 304 -GVIQIIGQNLDNLSW----VGRTSLKSREILEKAHKAAQTDFSVLLQGQTGTGKEIIAR 358 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFL 422 IH S R GP+IA+NC + L E G G T G+ + ELAHGGT+FL Sbjct: 359 MIHELSPRKNGPFIALNCAAIPNTLLESELFGYADGAFTGARRGGQPGKFELAHGGTIFL 418 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + + Q ALL+++++ + R+ + L IDV+VI + DL LV+ + F L+ Sbjct: 419 DEIGDMPLNAQVALLRLLQEKALVRIGGKTLQKIDVRVITASHKDLKALVDAHAFRHDLF 478 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKL-RSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 Y L I +PPLR R +P LV + + ++ + + + S +WPGN Sbjct: 479 YRLKVVSIELPPLRERLEDLPELVTHFIHKACAAIGRPMIDMAESVYPYFYSYSWPGNVR 538 Query: 542 ELYSVIENLALSSDNGRIRVSDLP----EHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 EL + + + + + V DLP E L + +DVS A ++ I+ Sbjct: 539 ELENCLAGMVAMCNGSLLTVRDLPPEVRESLSEKTEDEDVSL--------LASQTRQIIL 590 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 A T G+I S LLGI RTTL+RKMK+ Sbjct: 591 QALVKTDGKILPASRLLGISRTTLYRKMKE 620 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 182 bits (462), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/461 (27%), Positives = 228/461 (49%), Gaps = 48/461 (10%) Query: 208 LLESMDD----GVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 LLE++ + G+I + + FIN +A L + S+ ++ + L + I Sbjct: 10 LLENLTNHIPLGLIFISPENKIDFINKKAESFLN---SKSKSVENIDIFSFFPQLNELIN 66 Query: 264 QAHPLKHVEATFESQHQFIDAVIT----------LKPIIETQGTSFILLLHPVEQMRQLM 313 + K+ + DA++T + PI G F+ L ++ +++++ Sbjct: 67 NSSSKKNNQK---------DALVTSLDGNKYNLDICPI--NDGDIFVGWLLILKDLKEII 115 Query: 314 TSQLGKVS-----HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 S + K S +TF + + PQ ++++ ++S VL+ GE G GK LL+Q+I Sbjct: 116 -STVNKYSNQEAAYTFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSI 174 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEK 424 HN S + GP+IA+NC + E G + + G+ + ELA GGT+FL++ Sbjct: 175 HNASNVSNGPFIALNCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDE 234 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +E+Q LL+VI++GV+TR+ + IPI+V++IA T +L +++ F LYY Sbjct: 235 ICEMPIEMQVTLLRVIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYR 294 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFEL 543 L+ + +PPL+ R G +P L+N L ++ + I+ +++S WPGN EL Sbjct: 295 LNVMPLHLPPLKDRLGDVPILINYFLNIKSQKLHKGIPNINQKLYKKMISYCWPGNIREL 354 Query: 544 YSVIENLALSSDNGRIRVS-DLPEHLFTEQATDDVSATRLSTSLSFAE--------VEKE 594 + +EN+ + + ++ D L T+ + ++ L S+ E +EKE Sbjct: 355 ENCVENIVNLNGSTSYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLIILEKE 414 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 AI A G I + S LGI R L+ K+K++GI+ + Sbjct: 415 AIEKALCTFDGNITKASNALGISRNALYNKIKRYGINKYNY 455 >UniRef50_C5CJI8 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Comamonadaceae RepID=C5CJI8_VARPS Length = 514 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 190/374 (50%), Gaps = 43/374 (11%) Query: 287 TLKPIIETQGTSFILLLHPVEQMRQLMTSQLG------------KVSHTFAHMPQDDPQT 334 TL+P+I + F LL ++ R+ + +Q + +TFA P Sbjct: 142 TLQPLI----SKFALLQRDLDDARRELATQRNNPLYQHAADGQRRSKYTFASFIGSSPAA 197 Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 + R+AA+S+ PVLL GE G GK LL+ AIH S RA G +++VN D L Sbjct: 198 VEVKRHARRAAQSASPVLLLGETGTGKELLAHAIHAASARAKGQFVSVNIAAVPDTLLEA 257 Query: 395 EFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 EF G G T + GR + +LA GG+LFL++I + + LQ+ LL+ +++G I L + Sbjct: 258 EFFGFAPGAFTGADRRGREGKFKLADGGSLFLDEIGDMPLGLQAKLLRALQEGEIEPLGS 317 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV---- 506 +L+P D +VIA T+ DL LV + +F LYY L+ + +PPLR RR IPALV Sbjct: 318 NKLVPFDARVIAATSRDLPELVRRGQFREDLYYRLNVLPLRVPPLRERRSDIPALVEALG 377 Query: 507 -NNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVS--- 562 + LRS E ++ DALA L W GN EL +V+E + + SD+ RI + Sbjct: 378 EDMALRSGE----APPELTPDALALLAGQHWRGNIRELRNVLEQVTMRSDSQRIDAAQLE 433 Query: 563 -----------DLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 +LP L + D+ + + AE+E++AI A TGG S Sbjct: 434 RILREAGLEQIELPATLQSAHDADEEALLLRPLAQQVAELERKAIAAALTATGGNKLATS 493 Query: 612 ALLGIGRTTLWRKM 625 LLGI R TL+ +M Sbjct: 494 RLLGISRATLYERM 507 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 181 bits (460), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 152/576 (26%), Positives = 265/576 (46%), Gaps = 67/576 (11%) Query: 109 AEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRL----------- 157 +E GTCA +LA + V+ +H+ L + + P+F+ + Sbjct: 149 SESTTGTCAHALALRHKKPVQLFGPEHYLWELQDIVASSAPVFNENNEVIAALSLIQHLN 208 Query: 158 ------------TGTIALACPVEQTTAADLPLTLAIAREVGN---LLLTDSLLAETNRHL 202 T T+AL + + A L L + + N LLL +S L+ N+ + Sbjct: 209 DSPWAEGYQVLCTHTLALITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQI 268 Query: 203 NQLNALLESM----DDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 + LL + + +I+ D QGN+ +N A ++L++ + + IT L+ +L Sbjct: 269 LTTHDLLRTTLSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLL 328 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPII--ETQGTSFILLLHPVEQMRQLMTSQ 316 + + L E F + ++++K ++ G +L T + Sbjct: 329 LDWVAEGKDLTDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKR 388 Query: 317 LG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G S F + + P + + ++ +++S +LL GE G GK LL+Q+IHN+ R Sbjct: 389 AGTNASFHFDDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHNDY-RP 447 Query: 376 AGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKI 425 GP+IA+NC EL+G + + F G DRT GR ++ELA GTLFL++I Sbjct: 448 EGPFIALNCAAIPRSLIESELFGYESGS--FTGADRT----GRPGKIELADKGTLFLDEI 501 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + +++Q+ LL+V++ + R+ R+ +D +VIA T DL +V++ F +Y+ L Sbjct: 502 GDMPLDIQAVLLRVLEDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRL 561 Query: 486 HAFEITIPPLRMRRGSIPAL----VNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 I IPPLR R G I L ++N RS + + ++AL L S +WPGN Sbjct: 562 SVLTIHIPPLRTRSGDIEKLCQYFLSNYCRS---NGYGKKALSEEALYLLTSYSWPGNIR 618 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD--------DVSATR--LSTSLSFAEV 591 +L + I SDN I LP + + ++ AT S + E+ Sbjct: 619 QLENAIIYGINLSDNSLIEARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEM 678 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 E AII A + T + + + +L I ++TL+R++++ Sbjct: 679 ELNAIIMALEKTNNSVTKAAKILNISKSTLYRRLRE 714 >UniRef50_Q08XY4 Sigma-54 dependent transcriptional regulator n=3 Tax=Proteobacteria RepID=Q08XY4_STIAU Length = 986 Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 137/429 (31%), Positives = 214/429 (49%), Gaps = 20/429 (4%) Query: 214 DGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEA 273 +GV++ D G + +N AAR+LR+ GR + + L L +A+K PL + E Sbjct: 542 EGVLTLDHAGLVCALNHSAARLLRIQPAQVLGRPLRSIAALEP-LGEALKSGRPLLN-EV 599 Query: 274 TFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQ 333 Q + I T E + + L +++ +TS + TF + +DP Sbjct: 600 IALPQGELIVCAQT----YEGGVVATLQELASAQRLAHKITSSQARF--TFEDLIGEDPA 653 Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 + RQAARS P+L+ GE G GK LL+QAIH S AA P++ +N + L Sbjct: 654 FLSCLKDARQAARSDVPILITGESGTGKELLAQAIHRASPSAASPFVGINMAAFPRELLE 713 Query: 394 EEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G +R G + ELA GTL L++I + +E+Q LL+V+++ RL Sbjct: 714 SELFGYERGAFTGARAGGNPGKFELADRGTLLLDEIGDMPLEMQVKLLRVLQERTFQRLG 773 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 R +P+ +V+ATT DL +E+ F L++ L A + +PPLR R IP LVN Sbjct: 774 GSRDLPVMARVVATTHRDLERAIEEGSFRLDLFHRLRAVHLRLPPLRERPCDIPRLVNYH 833 Query: 510 LRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLA-LSSDNGRIRVSDLPE- 566 LR R R +++ +A L + WPGN EL ++IE A L D+ + V P Sbjct: 834 LRRYTSRLHRRPIQVAPHVMADLEAYDWPGNVRELANLIEGAASLLLDDQEVLVRTPPAI 893 Query: 567 HLFTEQATDDVSA----TRLSTS-LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTL 621 ++A + +SA R S L FAEVE+ A +A Q G + + + LG+ +TT Sbjct: 894 ARALQRARNPLSALPGGARPEPSVLPFAEVERRAFEHALQHFAGNVAQAAKALGVAKTTF 953 Query: 622 WRKMKQHGI 630 + K++++G+ Sbjct: 954 YSKIRRYGL 962 >UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR n=1 Tax=Pseudomonas stutzeri RepID=Q9F9U3_PSEST Length = 634 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 178/639 (27%), Positives = 290/639 (45%), Gaps = 42/639 (6%) Query: 13 SPLIATSWERCNK--LMKRET--WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 S +IA SW+R L R+ + P A G I R + +L ++ + Sbjct: 20 SQVIARSWQRSQNYGLCPRDKLLFEAPLVASG---KQIAERDRLLLDCAMPEMQQLHAAL 76 Query: 69 APRECALFILDETACILSR-NGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 AP++ L +D +LS +G ++LS + F G +E +GT A A ++ Sbjct: 77 APQDWVLACIDLEGVVLSSLSGRGAGTRELSQV-FRIGAQLSEQNVGTTAPGCALAERES 135 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 V + ++H+ + ++ ATP+F G + G + + + L AR + N Sbjct: 136 VFFVGEEHYLEEARQFSCLATPIFGLDGGIVGVLDASSRQGAPSVYTLESLEFAARAIEN 195 Query: 188 LL---LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 L L + LL + L+ L LE G++++D G L+ N A ++L L + Sbjct: 196 RLFAQLGEVLLVHLHHRLDILGTPLE----GLLAFDPAGKLRCANRIAGQLLHLGEVRA- 250 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF-IDAVITLKPIIETQGTSFILLL 303 G EL +P A + H L S H + A IT P T T Sbjct: 251 GLDFAELFDMP-FAHAACYRRHDLS-APLRLRSHHGGELHACITQGPPQRTAPTL----- 303 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 E R T++ H+ + DP + + R+A PVL+ GE G GK + Sbjct: 304 --AETPRPRRTAESLPAPHSGPCL--QDPALQDALARARKAFARDIPVLINGETGTGKEV 359 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGT 419 ++ +H S RA ++A+NC + + E G G T + + G + ++E AH GT Sbjct: 360 FARLLHEGSARAGEAFVAINCSSIPASLIESELFGHVEGAFTGSRKGGAIGKIEQAHKGT 419 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +ELQ LL+V+++ ++RL + +LI +D +I T DL L + F Sbjct: 420 LFLDEIGDMPLELQGRLLRVLQERNLSRLGSNQLIKVDCALICATHRDLQQLSAEQGFRE 479 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYY ++ +++P LR RR + AL+ + LR+ E L++ AL L+ WPGN Sbjct: 480 DLYYRINGLRVSLPALRERR-DLGALIQHLLRA-ETTGQQSLQLSPAALQALLDYHWPGN 537 Query: 540 DFELYSVIE-NLALSSDNGRIRVSDLPEHLFT----EQATDDVSATRLSTSLSFAEVEKE 594 +LY + AL+ D+G I V LP+ + + AT L + E Sbjct: 538 IRQLYQCLRLAAALAEDDGEIGVQHLPDEVRAGCGEQAATVAGEGLTLEAGSTLQLAEAR 597 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 AI A + GG + + LGI R TL+RK+K G++ G Sbjct: 598 AIRAAVEAAGGNLSAAARSLGIARATLYRKLK--GMEEG 634 >UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VG28_SPHWW Length = 584 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 164/575 (28%), Positives = 260/575 (45%), Gaps = 45/575 (7%) Query: 75 LFILDETACILSRNGDPQ-TLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 L LD + ++ GD + ++L +L F +G +E IGT A A + + A+ Sbjct: 39 LACLDVSGFVICSIGDAEGPCRELESL-FRNGVSLSESAIGTGAPGCALVEQKPFIVHAN 97 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF + ++ A PLFD G L G + C + ++ AR + N +L D Sbjct: 98 EHFLDEIHGYSCAAVPLFDVNGDLIGVLNATCRSGRDLSSVCEALRVAARAIENHMLLD- 156 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 L + L+ LL + V+++ E G L N A ++L +A++ + +L Sbjct: 157 LPGALHVSLHYHPDLLRTPLAAVLAFSEHGQLLGGNQIARKLLGHTRSATEFDHMFDLPF 216 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL--HPVEQMR- 310 AV + + + A P ++T P G L L H + MR Sbjct: 217 ARAVDELSGRNAEP-----------------IVTDTP----AGIRVHLSLARHADDVMRV 255 Query: 311 --QLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 L+ GK SH + M DP I + A PVLL GE G GK +L++ Sbjct: 256 GKALLPPPSGKRSSHASSDMFCSDPALLDTIGDAKLAFARDIPVLLTGETGTGKEVLARE 315 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLE 423 +H R GP++ VNC D + E G G T G + E AHGGTLFL+ Sbjct: 316 LHASGPRRNGPFVPVNCASIPDGLIEAELFGYVEGAFTGARRGGAPGKFEQAHGGTLFLD 375 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V+++ + + + PID+ ++ T DL LV F LYY Sbjct: 376 EIGDMPLSLQARLLRVLQERAVMPVGGSKDRPIDISLVCATHRDLKALVATGEFREDLYY 435 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKL-RSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 + +T+PPLR R + L+ + R + R + L + DDAL L S AWPGN + Sbjct: 436 RIDGLCVTLPPLR-ERADLSELIGQIVDREIGDRLT--LSLSDDALECLRSFAWPGNIRQ 492 Query: 543 LYSVIEN-LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 L ++ +AL++ + I LPE + Q +V S E++A++ A Sbjct: 493 LSLILRRAIALAAGSALIAPRHLPEEM--RQTRSNVG----REVASLERTERDAVLMALH 546 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 G I + LG+GR TL+RKM+++ I+ K Sbjct: 547 QCAGNIAATARQLGVGRPTLYRKMRKYNIEVQGVK 581 >UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WXM6_METML Length = 642 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 160/633 (25%), Positives = 273/633 (43%), Gaps = 35/633 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVT---FASIYRRKKAMLTLGQAALEDAWEYM 68 I+ I SW RC L N P + VT A + + +L L Q +E E + Sbjct: 30 IAEAIERSWRRC--LANGIDTNSPQSLEVVTAQELALKREKNQQLLKLAQPEMETLNEQI 87 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 A + + D+ IL G L + + + G E GT A+ I A+ Sbjct: 88 AHTRNVVILTDDEGVILHSLGGHHFLNEEQRIALSAGASWNENHRGTNAIGTVLIEQSAL 147 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 +HF + + A P+F ++ +L T+ ++ + L L A+ + N Sbjct: 148 TVQGAEHFMAYHHSLSCSAVPIFGAENQLIATLDVSNDFNMSQQHTLALVKMSAQMIENR 207 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L S E H + + ++ +GV + + G +L AT G+ Sbjct: 208 LFMASHKGEIALHFHARPEFIGTLWEGVAIFTDSG-------------QLVATNRSGQFQ 254 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 L T QQAI + A+ Q D +I P+ G + + P+ + Sbjct: 255 LSLNTSNTASQQAINFNNLFDVPFASLLRQVGSTDKLIV--PLRLNNGARIYVQMEPLNK 312 Query: 309 MRQLMTSQLGKVSHTFAH----MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 Q+ T+ V T A + D + R + +Q P+L+ GE GVGK L Sbjct: 313 KPQISTTPPATVKRTSAANLDLLDSGDAKISRAVQQIKQVLSRDIPILIQGETGVGKELF 372 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTL 420 ++AIH S + GP++AVNC + + E G + G ++E A+GGTL Sbjct: 373 ARAIHEASAQHKGPWVAVNCAALPEGLIEAELFGYEEGAFTGARRKGSPGKIEQANGGTL 432 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + + LQ+ LL+V+++ +T L + + IP++ +I+ T L VE F Sbjct: 433 FLDEIGDMPLSLQARLLRVLQERTVTPLGSTKTIPVNFSLISATNLKLKEKVESGEFRSD 492 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYY L+ + +PPLR R + AL++ L ++E+ + ++I + A + WPGN Sbjct: 493 LYYRLNGLSVALPPLR-ERSDLQALIDVIL-NIEQ--AGAIEITPEVRAIFQAHTWPGNI 548 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD---VSATRLSTSLSFAEVEKEAII 597 +L++V+ +D I L + E + ++ + + ++ +AI Sbjct: 549 RQLHNVLRTALALADGAAISTLHLTQDFIDEMSLSKPSLIANVATANPVDLDDLTNQAIR 608 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A Q G + ++ LGI R TL+RK+K GI Sbjct: 609 RAMQTEAGNVSAVARQLGISRNTLYRKLKTMGI 641 >UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LG66_RHOVA Length = 651 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 176/646 (27%), Positives = 277/646 (42%), Gaps = 58/646 (8%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKK---AMLTLGQAALEDAWEYMAPRE 72 IA SWER +A I+RR+ + L ALE + E + Sbjct: 27 IAASWERSRSF---GVGTALARAPLADEPEIFRRRSLNASFLAASHPALERSREMLRDAA 83 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D T +L GD + ++Q G EG IGT A+ A + V+ Sbjct: 84 SMMILADRTGFVLETAGDGRVVEQGKGNALQTGGGWQEGAIGTNAIGTALAERRPVQVTG 143 Query: 133 DQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +HF + + W+ A P+ G L G + ++ PV + L AI RE+ L Sbjct: 144 AEHFCEDVQRWSCAAAPVHHPIDGELLGAVDISGPVATFNPQSMALAAAIGREIEATLEK 203 Query: 192 DSLLAETN--RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + L RHL + S D VI D +G L A R ++D + Sbjct: 204 AAKLDHEILLRHLLSKRSTWLSEDILVI--DRRGYLVHSTETAMR--KIDTASPD----- 254 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEA-TFESQHQFIDAVITL-KPIIETQGTSFILLLHPVE 307 LP VL++ I A EA + +F +A + + K E G +LL Sbjct: 255 ---DLPRVLRRIIGSAS----AEAWERNCRDRFPNAGLEIVKSDGEVAGCLIVLLGKRSL 307 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + + F + D R + R+ A + PVL+ GE GVGK L ++A Sbjct: 308 PASPAIARAPKPAADAFDDIVGDSAVMRDVRERARKLAANPLPVLIEGETGVGKELFARA 367 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLE 423 I S A+GP++ VNC +A E G G T + NGR ++E A GG L L+ Sbjct: 368 IKTASACASGPFVPVNCGGMARDLIASELFGYVKGAFTGADGNGRPGKIEKADGGILCLD 427 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + ++LQS LL+V++ G++ R+ P+ +++++ T DL V RF R L+Y Sbjct: 428 EIGEMPMDLQSYLLRVLEDGIVYRVGDHEGRPVSIRLVSMTNRDLMDEVGAGRFRRDLFY 487 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL---------KIDDDALARLVSC 534 + A + IPPLR R + + L +RF+ R +DAL L Sbjct: 488 RIAAARLRIPPLRER--------GDDVLVLAERFAGRTAARLGRATPSFSNDALMLLRHY 539 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLP-EHLFTEQATDDV---------SATRLST 584 WPGN EL +VI+ + + RI V LP E ++A+ + T L Sbjct: 540 GWPGNVRELRNVIDAILALCETDRIDVEHLPLEMRMCDKASHRTCAEPAAAPKAPTVLPP 599 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E++AI+ + G + E + LGI R+TL+ ++ ++G+ Sbjct: 600 RRGARTPERDAILAEVEACAGNLTEAARRLGIARSTLYVRLAKYGV 645 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 180 bits (456), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/450 (30%), Positives = 215/450 (47%), Gaps = 34/450 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 Q +L+ +G+I+ D G + +NA A ++ L A G A+ +LL + + Sbjct: 197 QFRTILDYSTEGIITVDAAGAINLVNAAAMKITGLSGEAV-GLAVDKLLPQLGLSRVLAS 255 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH- 322 L VE Q AV + II Q + PV ++ L K+ Sbjct: 256 GRAELGEVETVNGQQV----AVNRVPIIIRGQAVGAVATFQPVADIQALEGKIRQKIYKR 311 Query: 323 ------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 TF + D P R+ I R+ ++ + VL+ GE G GK + +Q+IHN S R Sbjct: 312 GLVARLTFDDILGDSPAIRQTIAIAREFSKVNSNVLITGETGTGKEIFAQSIHNASSRRK 371 Query: 377 GPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIE 426 GP++AVNC EL+G A A F G R G++ ELAHGGT+FL++I Sbjct: 372 GPFVAVNCAALPENLLESELFGYAEGA--FTGAAR----GGKMGLFELAHGGTIFLDEIS 425 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 ++ +LQ LL+V+++ I RL R+IP+DV++IA T DL +++ F + LYY + Sbjct: 426 EISPKLQGRLLRVLQEREIMRLGDDRVIPVDVRIIAATNRDLYQMMQAGLFRQDLYYRVD 485 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYS 545 ++ +PPLR R+ I L+ + L+ R + +K I DA A L WPGN EL + Sbjct: 486 VLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNRPVKEIGPDAQAMLRRYHWPGNVRELRN 545 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQA-----TDDVSATRLSTSLSFAEVEKEAIINAA 600 + E LA+ + I D+ L E + + ++ + ++ A Sbjct: 546 IAERLAVLASGPVIGARDIAAVLTGETGRRKAINETAEPAAALAGANDVDLNRAILLKAL 605 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +A LGI RTTLWR++KQ+ + Sbjct: 606 EEADYHYGRAAARLGISRTTLWRRLKQYQV 635 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 140/438 (31%), Positives = 214/438 (48%), Gaps = 30/438 (6%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL---TLPAVLQQAIKQ 264 ++ S DG+I+ D+ + N A +V + A A+ G I + + LP +L+Q + Sbjct: 199 IVNSSHDGIIAIDDAERITLFNPVAEKVFGIPAAAAVGAKIRDKIPNTNLPRILRQGGSE 258 Query: 265 AHPLKHV-EATFESQH-------QFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQ 316 L++V E +Q + + AV + + E Q + +RQ + ++ Sbjct: 259 DGELQYVGEKVIVTQRFAIKVNGRVVGAVANFRDVTELQRLERL--------VRQKLHAK 310 Query: 317 LGKVSHT-FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G V+ A + + + LI R+ A VL+ GE G GK +L+Q IHN S RA Sbjct: 311 -GLVARIRLADIIGESAALKGLIERARKFAAVDATVLIVGETGTGKEMLAQGIHNASHRA 369 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVE 431 GP++AVNC + L E G G T + G+ ELAHGGT+FL++I + + Sbjct: 370 NGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGLFELAHGGTIFLDEISEMPLP 429 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 LQS LL+V+++ + R+ R+IP+DV++IA + +L LVE+ F LYY LH +T Sbjct: 430 LQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNLVEKGLFRDDLYYRLHLLTLT 489 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR R+ IP LV LR ID A+ L WPGN EL + I+ L Sbjct: 490 APPLRERKEDIPLLVRAFLRKHSHLNPLVSDIDSLAVQLLAEYEWPGNVRELENAIQRLI 549 Query: 552 LSSDN---GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 + S+ G+ VS L E L Q + + SL A++E + I Sbjct: 550 ILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAAPSL--ADLEAQYIAAVLAEENNNKS 607 Query: 609 EMSALLGIGRTTLWRKMK 626 + LGI R+TLWRK++ Sbjct: 608 RAAKRLGIDRSTLWRKLR 625 >UniRef50_C0GH19 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH19_9FIRM Length = 739 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 176/339 (51%), Gaps = 10/339 (2%) Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQ----DDPQTRRLIHFGRQAARSSFPVLLCGE 356 LLH EQ ++ ++ TF + Q D + + +F +AA+S+ VLL GE Sbjct: 401 FLLHKSEQEIAHYRQEI-QLMETFQGISQQIIGDSKKVKTAKNFVLKAAQSASTVLLLGE 459 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRL 412 G GK L ++AIH R GP+I VNC + L E G + + G++ + Sbjct: 460 SGTGKGLFARAIHFSGNRKDGPFIKVNCSAIPETLLESELFGYEEGSFTGAQKGGKIGKF 519 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELA+GGT+FL++I + +Q+ +L+V+++ I R+ IPIDV+VIA T DL + Sbjct: 520 ELANGGTIFLDEIGDMPFNMQAKMLRVLQEREIERIGGHHSIPIDVRVIAATNRDLREEI 579 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL-RSLEKRFSTRLKIDDDALARL 531 + NRF LYY L I+IPPLR IP L + + R +K K+ ++ + Sbjct: 580 KANRFREDLYYRLDVLSISIPPLREMASDIPVLTQSLIERICKKHHVPPKKVSEEVMGVF 639 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV 591 WPGN EL +++E L + I + LP HL+ + A+ S +EV Sbjct: 640 CRYPWPGNVRELENMLERLLNLVEEDIINIDHLPAHLWQHIQSSRYLASGHSLDNMTSEV 699 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E++AIINA + T + + LLG+ R+T + K+K++ + Sbjct: 700 ERDAIINALKATKNNRSKAAKLLGLHRSTFYEKLKRYDL 738 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 10/330 (3%) Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 Q+RQL T L + S +F + Q + L +AA+S FPV +CGE G GK L++QA Sbjct: 132 QLRQL-TRTLDEES-SFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESGTGKELVAQA 189 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEK 424 IHN S RA PYI VNC ++ L E G G T R R E AH G +FL++ Sbjct: 190 IHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAAHKGDIFLDE 249 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L + +Q LL+V++ R+ R I +D++ I T +L L+ + F L+Y Sbjct: 250 IGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARGGFREDLFYR 309 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 ++ I +PPLR R+ +P LV+ ++ L ++ ++ + +A+ + +WPGN EL Sbjct: 310 INVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQYSWPGNVREL 369 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL--STSLSFAEVEKEAIINAAQ 601 S +E + ++ RIR +LPE+L + +D A L + + + + +K+ +I A + Sbjct: 370 KSALEYSYVLAEGDRIRSENLPEYL--KDGGNDFQAVDLPPAPAENLQQRQKQELIEALK 427 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + + LLGI R T+ +M+++GID Sbjct: 428 QSSGNKSQAARLLGINRVTVLNRMRKYGID 457 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 126/445 (28%), Positives = 214/445 (48%), Gaps = 34/445 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 Q+ +++ + DG+I+ D+ G + N A ++ + + G+ + E + L + IK Sbjct: 197 QIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKLPSEVIGKKV-ETVIPNTRLYEVIK 255 Query: 264 QAHP----LKHVEATFESQH--------QFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 P ++ + T + + + + AV T + + E Q +++R+ Sbjct: 256 TGKPEIGKIQEISGTMIATNRVPIVVGNEVVGAVATFQDVAEIQNME--------QKIRR 307 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + + S F + + + +++ ++ A VL+ GE G GK L +Q+IHN Sbjct: 308 RLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVLILGETGTGKELFAQSIHNA 367 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEY 427 SER GP++A+NC + L E G G T + G+ ELAH GT+FL++I Sbjct: 368 SERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGKAGLFELAHKGTIFLDEIGE 427 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + + LQS LL+VI++ + R+ RLIP+DV++I T +L ++ + +F R L+Y + Sbjct: 428 MPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNLIEMINEGKFKRDLFYRISI 487 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-----IDDDALARLVSCAWPGNDFE 542 +I IP LR R+ I LV + K++S K I + L +PGN E Sbjct: 488 LQIHIPSLRERKEDIEVLVPYFI----KKYSLICKKHIQGITSRGMELLKKWDYPGNVRE 543 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 L S+IE + I V D+ + + + VS+ E+EKE I + Sbjct: 544 LESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKPLDEIEKEYIKKVIKF 603 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQ 627 T G + E + LGI RTTLWRK+K Sbjct: 604 TDGNLSEAAKKLGISRTTLWRKLKN 628 >UniRef50_C8WQE7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WQE7_ALIAD Length = 535 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 128/454 (28%), Positives = 219/454 (48%), Gaps = 24/454 (5%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL--- 251 L E +L + D V D G +N A R+ L GR++ +L Sbjct: 82 LREMREAYEELELIFSEAFDEVFVTDGDGITLRVNRAAERLYGLRQEELIGRSVFDLERE 141 Query: 252 -LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 + P+V A+K + ++ T + + + T P+ + G + +++ +++ Sbjct: 142 GVFYPSVTGLALKLRRQVTVLQTTSDGKQLWA----TANPVFDQHG-NIRIVISTAKEIS 196 Query: 311 QLMTSQLGKVSHTFAHMPQDD---------PQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 ++ ++ + + M D+ P+ R + H ++ A + LL GE GVGK Sbjct: 197 DVIRPEVMRAETSVGGMDADEQPPNMVTRSPKMRHVFHIAKRVAGTDISCLLLGETGVGK 256 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHG 417 + L+Q IH S R GP++ VNC ++ L E G G T ++G+ ++ELAH Sbjct: 257 STLAQWIHRMSPRHRGPFVEVNCAALPESLLESELFGYESGAFTGALKSGKPGKVELAHE 316 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + + LQS LL +++ V+TR+ R+ +D ++IA T DL +V F Sbjct: 317 GTLFLDEIAEVPLHLQSKLLDFVERRVLTRIGGTRMHTVDARIIAATNRDLKQMVRDGLF 376 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY L+ EI +PPLR R+ IP LV LR + T +K + + + RL + W Sbjct: 377 RADLYYRLNGAEIEVPPLRERKEDIPELVQQLLRRIFDECPTMVKRVHPEVIRRLQAYTW 436 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 PGN EL V+ L + +D I SDL + E+ + T A++E+ Sbjct: 437 PGNVRELEHVVRRLVILTDGDYILPSDLQDEWIDEETSGVTPCTSRGPLAQLAQLERNLY 496 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +AA+ E++ LG+ + T+ RK+K++G+ Sbjct: 497 ADAARHCRS-TYEIAEALGVSQATVVRKLKKYGL 529 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 167/662 (25%), Positives = 303/662 (45%), Gaps = 98/662 (14%) Query: 12 ISPLIATSWERCNK--LMKRETWNVPHQAQGVTFASIYRRK----KAMLTLGQAALEDAW 65 +SP+I SW+R + L + +N + A++ + + ++ G+ L + Sbjct: 18 VSPVIYRSWQRSKQRELSHKRVYN-----DEILPAALLNERCLEHEDLVRAGKPVLPYLY 72 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 ++ + + D+ IL GDP + + + + G +E + GT A+ + Sbjct: 73 RFLEGSNNIVMLCDDQGYILDSLGDPPFINKAQQVHLSPGANWSEAVRGTNAIGTVLVEK 132 Query: 126 QAVKTMADQHF---KQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIA 182 ++ + +H+ VL WA P+ ++ G + G + ++ + + + Sbjct: 133 VPLQVLGWEHYVEQNHVLNCWA---APICNADGDVVGVLDVS--------GEAGIERGME 181 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALL-----------ESMDDGVISWDEQGNLQFINAQ 231 R + ++L + L E + HL +L E M DG I+ D +G + IN + Sbjct: 182 R-LAEVVLMGAKLIEQSLHLTELQRDFHFARQGIEKAGEMMRDGFIAIDSRGIITEINRE 240 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVIT---- 287 A++L GR EL+ A A + +F + ++ + + Sbjct: 241 GAKLL--------GRKREELVGHLA--------ADVFDNRRWSFNGKSLYMQSSESDNLT 284 Query: 288 --LKPIIETQGTSF--ILLLHPV-EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 L + + QG I +L P + R T +G+ T + + D Sbjct: 285 SRLVKVTDEQGAPMGAIGVLSPAPREERSQETMWVGRSQATQSVFSRAD----------- 333 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAAL 392 +AA++S VL+ GE G GK ++++ +H +S R P++A+NC EL+G A Sbjct: 334 KAAQTSSTVLIQGESGTGKEIVARYLHQQSPRHNKPFVAINCAAIPATLIESELFGYADG 393 Query: 393 AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 A F G + G + E+A GGT+FL++I + +Q++LL+V+++ + R+ R Sbjct: 394 A--FTGAKK----GGAPGKFEVAQGGTVFLDEIGDMPSNVQASLLRVLQEREVVRIGDSR 447 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 P+DV+V+A T DL+ +EQ F LYY L I +PPL R I LV ++ Sbjct: 448 PRPVDVRVVAATNRDLSTRIEQGDFRLDLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVKK 507 Query: 513 LEKRFSTR--LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 + R S R + + D+ L++ WPGN EL + +E++ +++ + DLP + Sbjct: 508 I-CRASGREPMGVTDEVYEALLNYHWPGNIRELENCMESMVAMAEHSYLTTDDLPAEI-- 564 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +VSA +L + K+AI+ A T G+I + LLGIGRTTL+RK+++ GI Sbjct: 565 ---AKNVSAVSCGETL-LEQQTKKAIMQALAETNGKIAPAARLLGIGRTTLYRKIEELGI 620 Query: 631 DA 632 + Sbjct: 621 KS 622 >UniRef50_Q5VJD9 Sigma 54-dependent transcriptional factor n=1 Tax=Brachymonas petroleovorans RepID=Q5VJD9_9BURK Length = 667 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 171/656 (26%), Positives = 287/656 (43%), Gaps = 56/656 (8%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPH-QAQGVTFASIYRRKKAMLTLGQA 59 +SGA G +S +I SW+R KR +P A+ + + A+L + Sbjct: 30 LSGAMPPQG-CVSEVIVESWQRSRD--KRIDPGLPKAPVNEACLANARKDRTALLEAARP 86 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 L + E +A + + ++ IL G +++ G E +GT A+ Sbjct: 87 VLCEMEESLAEVGAMILLCSDSGVILHLGGASSVRDVGASINIVPGAVWDEDAVGTNAVG 146 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLT 178 +A + V+ +H+ + + W+ A+P+ D G+L G + L+ + L Sbjct: 147 MALSLDRTVRIRNFEHYCEAVMPWSCVASPIHDPLDGQLIGVLDLSHCEQVFDDYARSLV 206 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR- 237 LA ++ + L L ET L DGV+ D QG L N A LR Sbjct: 207 LASSKRIEQALDCARLRGETMLIEAYLERSARQGSDGVLLLDRQGRLLRSNEHALEALRA 266 Query: 238 --LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ 295 ++ T +G A+ QA + A + ++PI Q Sbjct: 267 YGVELTLRRGMALG-----------GEWQAQGVWRAPAWLQPDW--------VRPIF--Q 305 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT-----RRLIHFG---RQAARS 347 G ++ +L + ++ + + + A P+ P+ R H G R+AA Sbjct: 306 GQDYVGMLVRIPRLVRCAPALVDGPREPTAFAPEFAPEPDALDPRLRGHRGAAMRKAAMQ 365 Query: 348 SF-------PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG-- 398 + PVLL GE G GK +++QAIH S+RA ++AVNC LA E G Sbjct: 366 AMRVAAVEVPVLLQGETGTGKEIMAQAIHRASKRAGKAFVAVNCGAIPRELLASELFGYV 425 Query: 399 -GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPI 456 G T G+ + E A GGTLFL+++ L ++LQ LL++++ G + RL + + + Sbjct: 426 EGAFTGARRGGQAGKFEQADGGTLFLDELGELPLDLQPYLLRILEDGKVVRLGSDKPRAV 485 Query: 457 DVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKR 516 +V+++A T DL +E+ F LY+ I +PPLR RR + ++N L + +R Sbjct: 486 NVRIVAATNRDLRSAMEEGSFRSDLYFRFR-VGIHLPPLRERREDLDRYIDNALTEVAQR 544 Query: 517 FSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 + A L +PGN EL+++IE +A+ SD + + LPEHL Q + Sbjct: 545 HGMVKTVSPALRAFLHGYDFPGNLRELHNLIEQMAVMSDGSELDLEHLPEHLHAAQVSCA 604 Query: 577 VSATRLSTSLS-------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 A ++ S++ E+E I+ A ++ G + LGI RTTL+R++ Sbjct: 605 APACEMAPSMAPSAAPGMLKEIEWRTIVEALRLEQGNRSRAARRLGISRTTLYRRL 660 >UniRef50_A7HBA5 Two component, sigma54 specific, transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A7HBA5_ANADF Length = 466 Score = 177 bits (450), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 170/318 (53%), Gaps = 14/318 (4%) Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 K + F + P + + R AARS+ +L+ GE G GK +L++A+H ES RA GP Sbjct: 138 KQEYRFRDLLSKSPAMQSVFELARTAARSNSTILVLGESGSGKEVLARAVHAESPRAGGP 197 Query: 379 YIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSA 435 ++AV+C ++ L E G G T + R + E AHGGTLFL+++ + +LQ Sbjct: 198 FVAVSCAALTESLLESELFGHEKGSFTGAISRRKGKFEAAHGGTLFLDEVGDIGPKLQLD 257 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+V+++ R+ I +DV++IA T DL + +F L+Y L+ I +PPL Sbjct: 258 LLRVLEERRFHRVGGNEPIEVDVRIIAATNRDLRRAAHEGKFREDLFYRLNVIPILVPPL 317 Query: 496 RMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSS 554 R RR IP LV N + L R++ + DA+ L++ WPGN EL +V+E A+ + Sbjct: 318 RERREDIPLLVENFVERLSVEMKRRIEGVSPDAMGALMAHDWPGNVRELRNVLERGAVVA 377 Query: 555 DNGRIRVSD--LPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA 612 I++SD LP L +A++ T S EVEK + G + + + Sbjct: 378 TGTVIQLSDLGLPTRL--------EAASKPGTLASLEEVEKRHVAAVLAHANGNVSQSAR 429 Query: 613 LLGIGRTTLWRKMKQHGI 630 +LGI R TL+ KM+++G+ Sbjct: 430 ILGIDRVTLYNKMRKYGL 447 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 163/588 (27%), Positives = 267/588 (45%), Gaps = 63/588 (10%) Query: 82 ACILSRNGDPQTLQQLSALGFN-------DGTYCA-EGIIGTCA----LSLAAISGQAVK 129 A ++SR+ P+ ++L A+G DG +C G IG A LS A + +++ Sbjct: 15 AMVVSRDIAPEEARRLIAVGGYAALVTNVDGKWCYLAGKIGEAADGAELSWAPLVARSID 74 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +A + + V GT+A A PV ++P+ + + + Sbjct: 75 FLAQELAEAV-------------------GTLA-AAPVLILAQNNVPVGIYTPQ-----I 109 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 L L + R L A+ + + + + D G + N +A ++ + G I Sbjct: 110 LICGLWEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHPIE 169 Query: 250 EL---LTLPAVL--QQAIK----QAHPLKHV---EATFESQHQFIDAVITLKPIIETQGT 297 E L + AVL QAI Q P HV A I ++ + I E Sbjct: 170 EFFSNLIITAVLASSQAISDKYHQPKPGAHVLINAAPICCDGSIIGSIAAERDITEIVNL 229 Query: 298 SFILLLHPVEQMR-QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + L + M + ++ FA + + R+ I R+ A SS PVL+ GE Sbjct: 230 TQQLCATNAKVMSLKREIKEINAQPDPFAAICGHNTVLRQEIATARKIAISSVPVLIRGE 289 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRL 412 G GK + ++AIH S R GP++ VNC EF G G T ++ G+ Sbjct: 290 SGTGKEVFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKKGKPGLF 348 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELAHGGTLFL++I L E+Q LL+V++ R+ R + +DV++IA T +L ++ Sbjct: 349 ELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHRNLEAMI 408 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARL 531 EQ F LYY L+ + +PPLR RR IP LV+ ++ + K++ + +A Sbjct: 409 EQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEPEVMAVF 468 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH-----LFTEQATDDVSATRLSTSL 586 + WPGN ELY+V+E L + +D G ++ +DLP L + + +A L + Sbjct: 469 LEYDWPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQNLPAAT 528 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 +E+ I+ A G R + + LGI R+TL+ KM++ G++ + Sbjct: 529 E--RMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLNTSE 574 >UniRef50_C1ZI03 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=4 Tax=Planctomycetaceae RepID=C1ZI03_PLALI Length = 473 Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/354 (33%), Positives = 186/354 (52%), Gaps = 34/354 (9%) Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 + +S I LL ++ + + + G F + + P RLI R A + VL+ Sbjct: 132 RASSRIRLLRKTFELSRRLDEKFG-----FEGVIGNSPSMHRLIEKLRSVAPTDSTVLIQ 186 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSR 411 GE G GK L+++AIH SER P++ +N ++ L E G G T R+ + Sbjct: 187 GESGTGKELVARAIHQNSERKNKPFVPLNISALPESILESELFGHEAGAFTGAATKRIGK 246 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E A+GGTLFL+++ + + Q LL+V+++ ITRL A IPI+V+++A T ADL + Sbjct: 247 FEYANGGTLFLDEVGEMPMATQIKLLRVLEERRITRLGANDEIPINVRLVAATNADLQDM 306 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR- 530 +++ F + LY+ L I +PPL RR IP L+++ L K+F+ R K + R Sbjct: 307 IKKGTFRKDLYFRLSVVTIVLPPLSDRRADIPFLIDHFL----KQFAERQKRPIPTVTRQ 362 Query: 531 ----LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE------------HLFTEQAT 574 L++ AWPGN EL +V+E + + +G++ V DLPE L A Sbjct: 363 VQQALMAYAWPGNIRELRNVVEGMMVLDIDGKLDVDDLPEGIGAGHHEHSEVDLIQNPAG 422 Query: 575 DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +D R S +VEK I A ++TGG+ E + LLGIG TL+RK++++ Sbjct: 423 NDGLIGR-----SLNDVEKYYIARALELTGGKRDEAANLLGIGERTLYRKIREY 471 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 176 bits (447), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 147/511 (28%), Positives = 233/511 (45%), Gaps = 44/511 (8%) Query: 145 FCATPLFDSKGRLTGTIALACPVEQTTAADLPLT---LAIAREVGNLLLT----DSLLAE 197 CA D G++ G I + C E+ A L L + N++++ + Sbjct: 91 LCAPIKID--GKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITM 148 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA- 256 + ++ L +++++ DGV + G L ++N A R +RL LPA Sbjct: 149 MSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPP-----------LPAN 197 Query: 257 -VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL--M 313 L E ++ + + + + ++ H + R++ Sbjct: 198 LTLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFARLVIFEHQRDFTRRMSRF 257 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 TSQ S + + P RL R A SS VL+ GE G GK L ++AIH ES Sbjct: 258 TSQAH--SDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESN 315 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG-------GDRTDNENGRLSRLELAHGGTLFLEKIE 426 R P+IA+NC D+ L E G G R+ +GR+ + ELA+GG LFL++I Sbjct: 316 RHDQPFIAINCGAIPDSLLESELFGYISGAFTGARS---SGRIGKFELANGGVLFLDEIS 372 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + LQ LL+V+++ ITRL + +LI ID++VIA T +L+ L+ N F LYY L Sbjct: 373 SMPLYLQVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAHNSFRSDLYYRLK 432 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYS 545 IPPLR R + L + R +RF L+ ID + L S WPGN E + Sbjct: 433 VIPFEIPPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKSYPWPGNIREFEN 492 Query: 546 VIENLA-LSSDNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINA---- 599 IE + + +NG + + LP L + R + +E+E++AI A Sbjct: 493 AIEFIVNMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRF 552 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 TGG+ + + LGIG TL+RK++ +G+ Sbjct: 553 GSTTGGK-KLAAERLGIGLATLYRKIQLYGL 582 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/460 (28%), Positives = 231/460 (50%), Gaps = 26/460 (5%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA---ITEL 251 L + L+ + ++ +G+ D++G ++ N +R +++ + G+ I E Sbjct: 117 LKQKEEMLHLYEMVFDTAYEGLTVVDDKGIIRLFNEAYSRYVKVPTEEAIGKDAALIIEN 176 Query: 252 LTLPAVLQQAI---KQAHPLKHVEATFESQHQFID-AVITLKPIIETQGTSFILLLHPVE 307 LP VL+ + QAH L+ + D V+ I+ +G S I + ++ Sbjct: 177 TRLPVVLKTGVPERSQAHRLQGQNLVVHRIPIWKDNKVVAAAGILVYEGVSEIYQV--ID 234 Query: 308 QMRQLMTSQLGKVSHT---------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 QM +L ++ K + F + D P + R+A++S PVL+ GE G Sbjct: 235 QMEELDKTKHSKFTKDPNKKNSLTRFEDLLGDSPCFTKTKKIARKASQSKAPVLITGESG 294 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENG-RLSRLEL 414 VGK +++QAIHNES G +I+VNC +A L E G G T E G + ++EL Sbjct: 295 VGKDIVAQAIHNESPITRGRFISVNCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIEL 354 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 AH GTLFL++I + + +Q+ +L+VI++ + R+ + ID ++I T D+ +V + Sbjct: 355 AHKGTLFLDEIGDMPLTMQAKILRVIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHE 414 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSC 534 F LYY L+ I IP LR R IP +V++K+ L + R ID + + + Sbjct: 415 GTFREDLYYRLYVIPIHIPSLRERAEDIPIIVSHKIAELNNEYGDRKTIDQLVVQWMYTQ 474 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ---ATDDVSATRLSTSLSFAEV 591 W GN EL + +E L + S++ + + +LP+ + +Q + + ++ +++ SLS E Sbjct: 475 PWKGNIRELINFLERLYVLSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAESLS-EEE 533 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E++ I + G + + LLGI R TL+ K+ ++ ++ Sbjct: 534 ERDRIKETLEHVKGNKTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Burkholderia RepID=B2JW78_BURP8 Length = 689 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 170/640 (26%), Positives = 277/640 (43%), Gaps = 37/640 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL---EDAWEYM 68 + ++ SW+RC L+ V V + + + A L A+L + E + Sbjct: 38 VRSVVDDSWQRC--LVGHVNPGVDRAPPAVAETQLMQWRDANARLVSASLPLMQQTRELL 95 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + + D IL GD + L+ S +G G E GT A+ A QAV Sbjct: 96 SQTGTVMLLADPDGLILQHEGDMRILEPASEVGLVPGCNWTELNCGTNAIGTALTLKQAV 155 Query: 129 KTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + +HF + W AT + D G + G I ++ + + L LT+++A + + Sbjct: 156 QIHGAEHFCAGIKRWTCSATVIRDPMDGHVLGVIDVSGLADTYSRYSLALTVSLAGRIES 215 Query: 188 LLLTDSLLAETNRHLNQLNALLESM----DDGVISWDEQGNLQFINAQAARVLR---LDA 240 L D++ R L L+ D ++ D++G L N Q LR D Sbjct: 216 RLAKDAM----ERRLRLLDRCASGFGSHASDAMLVIDDKGRLVKANPQVVPTLRRLGFDV 271 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 G + L T A P H + + L ++ GT + Sbjct: 272 NLDAGFVLPGLDT--TADHPLTANAPPWLH----YAKVETLREGSTVLGFVVVIPGTGNV 325 Query: 301 L-LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + P +L + G + F + D R + RQ A S PVLL G+ GV Sbjct: 326 RGAISPSGGRDKLRSVHSG--AGAFERIIGDSRTLRAAVDKARQLAPSKVPVLLLGDTGV 383 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELA 415 GK L +Q IH SERA GP++A+NC LA E G G T ++G ++E A Sbjct: 384 GKELFAQGIHQASERAEGPFVALNCGGLSRDLLASELFGYAEGAFTGARKSGAAGKIEAA 443 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I + +++Q LL+V+++ I RL ++ +++A T DL + + Sbjct: 444 DGGTLFLDEIGEMPLDIQPHLLRVLQENEIYRLGENTPRKVNFRLVAATHRDLKDAIAKG 503 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSC 534 F L+Y + ++IP LR R +P L++ L L + T D +A A ++ Sbjct: 504 SFRMDLFYRIAVTTVSIPSLRERGEDLPTLISYWLGYLCDCYGLTPRSFDAEAYACMLKY 563 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT------DDVSATRLSTSLSF 588 WPGN EL + IE L ++ I V LP + AT +++ ++T S Sbjct: 564 EWPGNVRELRNAIEGALLLAEGTTITVEKLPVEVAAAAATAVHLAQGEMTEPVMATGDSL 623 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E E I A GG + + +A LGI ++TL+ K++++ Sbjct: 624 KTAEAEYIRRALARCGGNLTQAAAQLGIAKSTLYEKLRRY 663 >UniRef50_A6TUL7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUL7_ALKMQ Length = 632 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 130/450 (28%), Positives = 216/450 (48%), Gaps = 24/450 (5%) Query: 201 HLNQLN-ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL---LTLPA 256 +N N +L+SM + + D G + IN Q L +D+ + + I L Sbjct: 189 EINNFNKTILDSMPNCLALIDPNGIIIKINKQYNDFLNIDSKKVENQNIKSLGWTTKYKE 248 Query: 257 VL---QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 VL AI Q FES + + L+ +I T+ L+L + + + M Sbjct: 249 VLITGNAAIWQEDIEDDEYIIFESPVAEGNGI--LRQLIPTKSEFVKLMLDKMTFLEREM 306 Query: 314 TSQLGKVSH------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 KV A + D R +I + ++ +++ LL GE G GK L ++A Sbjct: 307 KYYKNKVKEKNNDIENIADLSVDSDCMREVIRYMKKVSKTDATTLLRGESGTGKTLFAKA 366 Query: 368 IHNESERAAGPYIAVNC----ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLE 423 IHNES R P+++++C E + +A L G N+NG+ +LE+AHGGT+FL+ Sbjct: 367 IHNESHRKNNPFVSIDCTTIPENFFEAELFGYEAGAYTGANKNGKAGKLEMAHGGTVFLD 426 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + VE QS LL+ +++ R+ +DV++IA T +L ++ + +F + LYY Sbjct: 427 EIGEIPVETQSKLLRFLQEKEFERIGGITTKKVDVRIIAATNQELETMISKGQFRKDLYY 486 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFE 542 L+ I +PPLR R IP+L N L + LK I ++ + L+ WPGN E Sbjct: 487 RLNVININLPPLRERLEEIPSLTNKILLDFCREVGIELKEIGEEGMKELIHYNWPGNIRE 546 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 L ++++ LA++S+ I SD+ + + A + S EK+ II+A + Sbjct: 547 LENLVKRLAINSEQKMIERSDIAREIEITTKIQPIQALEGQMNQS----EKQNIIDALEK 602 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + + LGI R TL+ K+K+ GI + Sbjct: 603 YDFNKTQTAKGLGITRQTLYNKIKRFGISS 632 >UniRef50_Q1ILI0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ILI0_ACIBL Length = 467 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 168/320 (52%), Gaps = 9/320 (2%) Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 K H F M P+ RL +AA S+ PVL+ GE G GK ++++A+H P Sbjct: 145 KARHGFGGMVGRAPEMERLYRIITKAANSTHPVLIMGESGTGKEVVARAVHYTGCYKDKP 204 Query: 379 YIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSA 435 +I V+C + E G G T ++ + L +A GGT+FL++I L ++LQS Sbjct: 205 FIPVDCGSLVPTLIESELFGYVKGAFTGAQHSKQGLLAMADGGTVFLDEIGELPIDLQSK 264 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+ +++ I + R +PI+V+++A T DL V+Q F R LY+ L+ + IPPL Sbjct: 265 LLRALQEKEIRPVGGTRAVPINVRILAATNRDLEQAVQQGTFRRDLYFRLNVLTLRIPPL 324 Query: 496 RMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 R R+ IP LV + L E+ + I D+AL +++ WPGN EL ++ + Sbjct: 325 RDRKQDIPLLVGHFLERTERATGFQRNISDEALKLMLTYDWPGNVRELEHCLDRACALTS 384 Query: 556 NGRIRVSDLPE-----HLFTEQA-TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 I DLP H+ T+ A + + AE+EK+AI+ A + G E Sbjct: 385 GPTINTLDLPTTIQNWHVQTQTVLAPQAPAAPTNGIVPIAEMEKQAILEAIERLHGDKLE 444 Query: 610 MSALLGIGRTTLWRKMKQHG 629 + LLGIG+TTL+RK+K++G Sbjct: 445 AARLLGIGKTTLYRKLKEYG 464 >UniRef50_A9HYL1 Propionate catabolism operon regulator n=3 Tax=Bordetella RepID=A9HYL1_BORPD Length = 640 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 142/456 (31%), Positives = 216/456 (47%), Gaps = 51/456 (11%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL---LT 253 E R+ QLN +L S+ D V++ D + +N R+L DA A G+ + L LT Sbjct: 200 EAGRY-EQLNGVLHSLQDAVLAVDRDHRIIAVNPSMQRLLDHDAAAMVGQPLDRLRPELT 258 Query: 254 LPAVLQQAIKQAHPLKHV--------EATFESQHQFIDAVITLKPI--IETQGTSFILLL 303 L L ++ L + + + A +TL I TS Sbjct: 259 LRPTLDTGQPESAGLLRLGGRDWLANRMPIRERGAVVGAALTLYDAGRIHEADTSLR--- 315 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 V+Q R+ T++ + FA + P R + R+ A++ VL+ GE GVGK L Sbjct: 316 --VQQRRRQNTAK-----YQFAELIGRSPPFLRAVRTARRYAQTDLTVLIAGESGVGKEL 368 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT----DNENGRLSRLELAHGGT 419 +QAIHNES RA P++AVNC + ++ L E G + G+ E AH GT Sbjct: 369 FAQAIHNESRRADRPFVAVNCASFPESLLESELFGYEEGAFTGSRRGGKRGLFEAAHTGT 428 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + + LQS LL+V+++ +TRL A IP+DV++IA T L+ +V Q RF + Sbjct: 429 LFLDEIGDMPLPLQSRLLRVLQEREVTRLGATAAIPVDVRIIAATHQPLSDMVAQRRFRQ 488 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK---IDDDALARLVSCAW 536 LYY ++ + +PPLR R I L+ + +R L+ + L RL AW Sbjct: 489 DLYYRINTLRLEVPPLRERPDDIQPLLETLIDRCLRRLGAPLQAAGLVAPWLPRLRRYAW 548 Query: 537 PGNDFELYSVIENLAL---------SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 PGN EL ++ E +A+ D+ +R D PE LF A + + Sbjct: 549 PGNVRELENISERMAVFLMQYPHAADVDHDALR-HDCPE-LFEAGA---------AVAAD 597 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 +++ + A + GG QE + LGI R+TLWR Sbjct: 598 EGRSQRDRALRALEACGGNRQEAARRLGISRSTLWR 633 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 176 bits (446), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 170/312 (54%), Gaps = 16/312 (5%) Query: 333 QTRRLIHFGR---QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 QT ++I + +AA S VL+ GE GVGK + ++ IH SERA P++A+NC + Sbjct: 425 QTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADKPFVAINCAAIPE 484 Query: 390 AALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 L E G + G+ ++E A GGTLFL++I + + +Q LL+ I+ Sbjct: 485 NLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQVKLLRFIQNREF 544 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 R+ + +D+++IA T LA LV++ RF LYY L+ F I IPPLR RR IP L Sbjct: 545 ERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIPPLRERRDDIPLL 604 Query: 506 VNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 VN + +R KI +A+ L++ +WPGN EL +VIE ++ I+ Sbjct: 605 VNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYYLAEGNLIK---- 660 Query: 565 PEHLFTEQATDDVSATRLSTSLSF----AEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 PEHL + + +S R++ +F AEVEK+ II + T + LLGI R T Sbjct: 661 PEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAKLLGIPRAT 720 Query: 621 LWRKMKQHGIDA 632 L++K+K++GI+A Sbjct: 721 LYQKIKEYGIEA 732 >UniRef50_D1U4X2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U4X2_9DELT Length = 442 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 138/440 (31%), Positives = 215/440 (48%), Gaps = 21/440 (4%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRL---DATASQGRAI--TELLTLPAVLQ 259 L +L+S+ GV + D N+ F N +A R+ +A Q R + +E + L+ Sbjct: 10 LRRVLDSVALGVFAVDRDWNITFFNREAERITGYSTQEALGMQCRDVFRSERCSTRCYLR 69 Query: 260 QAIKQAHPLKHVEATFESQH-QFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQ-- 316 QA++ + V ++H + I +T + + QG + L VE + L Q Sbjct: 70 QAMRSKRSVIKVRLEILNRHNRRIPLEVTAAVLYDEQGVT----LGGVESLLDLTVRQNL 125 Query: 317 --LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + S+ F+ + DP +RL A + VLL GE G GK L+++AIHN S R Sbjct: 126 ETCVRQSYRFSDLVGRDPAMQRLFQTMAVVAPTEAAVLLLGETGTGKDLVARAIHNLSRR 185 Query: 375 AAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVE 431 A+GP++ VNC L E G G TD + A GG++FL+++ + E Sbjct: 186 ASGPFVKVNCAAIPANLLESELFGYRKGAFTDARQDKPGLFAKAAGGSVFLDEVGDIPRE 245 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 Q+ LLQV+ + L A +DV+++A T DLA LV++ F LYY L E+ Sbjct: 246 SQAKLLQVLDEHAYIPLGATDPESVDVRLVAATNRDLAALVQKGAFRSDLYYRLRVVEVD 305 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR RR IP L+ + + R ++ + A+ L+ +PGN EL ++E+ Sbjct: 306 IPPLRRRRCDIPLLIEHFIIEFAARQGKPVQGVAPKAMHILLQYDYPGNVRELRHIVEHG 365 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 + S IR DLP +L T+++ D S S + E+E + A R+ E Sbjct: 366 VILSTTDEIRARDLPRYL-TQRS--DGSYFDPIVSNQTGDDERERLRQALDRHHWRVSET 422 Query: 611 SALLGIGRTTLWRKMKQHGI 630 + LGI RTTLWR+ K+HG+ Sbjct: 423 ARALGIDRTTLWRRRKKHGL 442 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 176 bits (445), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 147/503 (29%), Positives = 245/503 (48%), Gaps = 44/503 (8%) Query: 159 GTIALACPVEQTTAADLPL----TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDD 214 G A PV T+ + P+ L++A E+ + ET L+Q+N + +D Sbjct: 93 GKAPTAIPVVNNTS-NKPIGLLEPLSVANEIYAGFVKLRCFFET--VLDQVNESICGIDK 149 Query: 215 --GVISWDEQGNLQFINAQAARVL--RLDATASQGR---AITELLTLPAVLQQAIKQAHP 267 V+ W+ + + N +A ++L R++ S R + E + + Q + AH Sbjct: 150 LHRVMIWNPKAE-ELYNVKAEKILSGRIEDFFSNLRISNCMHEKKEVRGLYHQPCEGAHV 208 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH---TF 324 L + F+S + I + K I E L+ +L+ ++ K+S F Sbjct: 209 LINSAPVFDS-GKVIGGLAVEKDITEI--VQLNQELNKASTQVKLLEQEIRKISGQDCAF 265 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + ++LI FG++ + + VLL GE G GK LL++AIH S R P+I VNC Sbjct: 266 NKLIGRSEAIQKLIVFGKKISVTEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNC 325 Query: 385 ----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 EL+G A F G DR G+ ELA+GGTLFL+++ + +E+Q+ Sbjct: 326 GAIPNNLFESELFGYEGGA--FTGADR----KGKPGMFELANGGTLFLDEVGEMPIEMQA 379 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++G R+ + + ++V+V+A T +L ++ + +F LYY L+ + IPP Sbjct: 380 KLLRVLQEGTFYRVGGSQSVHVNVRVLAATHRNLEDMINRRQFREDLYYRLNVVALEIPP 439 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR RR IP LV+ ++ +++ + KI+ + + WPGN EL + +E L + Sbjct: 440 LRDRREDIPELVHLFMQEFCQKYDKNIKKIEPAVMTAFLDYTWPGNVRELKNAVERLVVL 499 Query: 554 SDNGRIRVSDLPEHL----FTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 +D I + LPE+L + T VS +L E EK+ I+ Q G E Sbjct: 500 TDGDIIDEAALPENLRRNTYISLVTSPVSQGKLMNVA--VEAEKQLILKTLQQVRGNRSE 557 Query: 610 MSALLGIGRTTLWRKMKQHGIDA 632 + +LGI R+TL+ K++Q GI A Sbjct: 558 AARVLGIPRSTLYYKLRQLGIPA 580 >UniRef50_D2L030 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L030_9DELT Length = 446 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 133/430 (30%), Positives = 202/430 (46%), Gaps = 26/430 (6%) Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVLQQAIK 263 LE++ D V + D +++ N A + R+D + GR E+ + VL+Q+++ Sbjct: 18 LENVADAVFAVDRDFLVRYCNLAAGEIARIDPAEAIGRTCREVFGVSNCRSVCVLRQSME 77 Query: 264 QAHPLKHVEATFESQH-QFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH 322 +A P+ + T + Q + I+ PI G ++ V+ R L S G VS Sbjct: 78 EARPIANRIVTLKRQGCPDVPVTISAAPIWAMGGA----VIGGVQVFRDL--SGGGFVSR 131 Query: 323 TFAHMPQDD-----PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 P DD PQ ++ Q A+S VLL GE G GK + ++AIH SER++G Sbjct: 132 LAGLQPLDDFGTRDPQLSEIVRMLPQIAQSDSTVLLLGESGTGKEVFARAIHKLSERSSG 191 Query: 378 PYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 P++AVNC + + E G G TD + R LA GTL L++I L +Q+ Sbjct: 192 PFVAVNCGALPEQLMESELFGYKSGAFTDARKDKPGRFALAEAGTLLLDEIGDLPYAMQA 251 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 +L+ +++ L +P DV+VIA T DL +V F + L+Y L I IPP Sbjct: 252 KILRALQERAYEPLGGVATLPADVRVIAATNRDLGKMVADGAFRQDLFYRLSVVVIRIPP 311 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R G +P LV+ L + R++ I +A+ RL++ +PGN EL +++E A+ Sbjct: 312 LRERPGDVPLLVDRVLGRCRMAVTKRIEAISPEAMERLLAHDYPGNIRELENILEYAAIL 371 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 S I + LPEHL A + AE+ A A GG Sbjct: 372 SPGRTIELCHLPEHL-----RGPAPACPFKNGRTMAEIRFLAAREAVARCGGNRNAACRE 426 Query: 614 LGIGRTTLWR 623 LGI + TL R Sbjct: 427 LGISKDTLRR 436 >UniRef50_UPI0001C424F3 transcriptional regulator n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424F3 Length = 475 Score = 175 bits (444), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/470 (27%), Positives = 231/470 (49%), Gaps = 52/470 (11%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL----LTLPAVLQ 259 +L A+L+ D ++ D +GN+ + + ++ GR++ +L + P++ Sbjct: 11 ELQAILKGSKDNIVITDGEGNVLKASPNCLDIYGVEFNQILGRSVYDLEKEDIFSPSITV 70 Query: 260 QAI---KQAHPLKHVEATFESQHQFIDAVITLKPIIETQG-----TSFILLLHPVEQMRQ 311 + + K+ L+H + + T P+ G SF L +E++R+ Sbjct: 71 RVLNEKKECQVLQHTKGER-------TVLATGMPVFNENGELIRVISFSYDLTEIEELRE 123 Query: 312 ---LMTSQLGKVSHTFAHMPQDDPQTRRLI----------HFGRQAARSSFPVLLCGEEG 358 + ++G + + + Q R +I ++ + S V+ GE G Sbjct: 124 NYHTLQERMGLYESQIEELLEKEEQDRDVILKSKAIKRVWELVKRVSDSEATVVFLGESG 183 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLEL 414 VGK + ++A+HN S RA+ P+I VNC +A E G + ++ G+ +EL Sbjct: 184 VGKNVFARALHNGSSRASKPFIEVNCSAIPEALFESEMFGYESGSFTGAHKKGKPGMIEL 243 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTLFL++I L + +Q+ LL+V+++ +TR+ + ID ++IA+T +L + Sbjct: 244 ADGGTLFLDEIGELPLSMQAKLLKVLQEKTVTRVGGLKPHKIDFRLIASTNQNLEEMARS 303 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSC 534 F + LYY LH I IPPLR R+ I L+ + L S ++++ + AL L++ Sbjct: 304 GSFRQDLYYRLHVIPIEIPPLRKRKDDILLLIQHYLHSFNQKYNVHKHLQALALDELLAY 363 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLP------EHLFTEQATDDVSATRLSTSL-- 586 WPGN EL + +E L L+S+ RI +SDLP +H E++T S ++ S Sbjct: 364 HWPGNVRELENTMERLVLTSEKDRIEISDLPLLIHKQQHNSIEESTASQSNEAINASTYK 423 Query: 587 -SFAEVEK---EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + A+VEK E I + T EM+ LLG+ ++T+ RK+ ++ +++ Sbjct: 424 EAMAQVEKHWLEHAIKQCKTT----YEMAELLGLSQSTVVRKLHKYNLNS 469 >UniRef50_C5CLY6 Proprionate catabolism activator, Fis family n=1 Tax=Variovorax paradoxus S110 RepID=C5CLY6_VARPS Length = 659 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 30/329 (9%) Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 H FA++ P R + R+ AR+ VL+ GE GVGK L +Q+IHNES RA P++A Sbjct: 340 HRFANLIGQSPAFLRAVQTARRFARTDLTVLIAGESGVGKELFAQSIHNESVRAGRPFVA 399 Query: 382 VNCELYGDAALAEEFIGGDRT----DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALL 437 VNC + +A L E G + G+ E AH GTLFL++I + ++LQ+ LL Sbjct: 400 VNCAAFPEALLESELFGYEEGAFTGSRRGGKRGLFEAAHTGTLFLDEIGDMPLQLQTRLL 459 Query: 438 QVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRM 497 +V+++ ITRL A IP+DV+VIA T L ++ + RF + L+Y L+ + +PPLR Sbjct: 460 RVLQEREITRLGATAAIPVDVRVIAATHQPLNDMIAERRFRQDLFYRLNTLRLPLPPLRE 519 Query: 498 RRGSIPALVNNKLRSLEKRFSTRL---KIDDDALARLVSCAWPGNDFELYSVIENLA--- 551 RR I L ++ +R TRL + L RL + WPGN EL ++ E +A Sbjct: 520 RREDIAPLAEAQVGRCLQRLGTRLDPVRALAPLLPRLRAYDWPGNIRELENLGERIAVFL 579 Query: 552 --------LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 + D R DLPE LF + A +V+ T LS + A Q Sbjct: 580 MQFDHLEDVRYDELR---HDLPE-LFADTAASEVAD---DTGLS-----AARVAAALQAQ 627 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 GG Q + LG+ R+TLWR M++ G DA Sbjct: 628 GGNRQAAARQLGVSRSTLWRWMRERGADA 656 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 174 bits (442), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 163/642 (25%), Positives = 292/642 (45%), Gaps = 34/642 (5%) Query: 11 GISPLIATSWERCN--KLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G+ + SWE+C +L + T +P ++G + M L L D + Sbjct: 27 GVREEVLASWEKCRERRLDAKTTVIKTLPTISEGEKLPN-----PIMSFLRDDILPDITK 81 Query: 67 --YMAPREC--ALF-ILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 Y +EC ALF + A + S+ G+ L+QL+ GT +E IGT A SL Sbjct: 82 LLYQLLQECQGALFWVYQRNAIVFSQRGNQDFLRQLNQHNIGIGTCLSEEYIGTTAFSLV 141 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPL--TL 179 + + +H+ +L +A D G I + P E T L Sbjct: 142 DKPHEESWVIGHEHYLDLLTPYATYTYYQEDFYGHSYAFIIV--PKEAFTDGLLSYFRLF 199 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 ARE +SL ++ L N L E+ ++ VI D G + N + ++ + ++ Sbjct: 200 NKARESTIRCYRNSLESDLKSEL--FNQLSEARNEAVIFIDSFGKIVDANQKFSKWVNVE 257 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVE---ATFESQHQFIDAVITLKPI-IETQ 295 + + +TE+L + ++ + E + QF+ + +KPI + + Sbjct: 258 KAELKDKELTEVLPEMQRILSCLETGKTITSEEIQLSKLPPHMQFVQ--MDVKPIESDKK 315 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 T I++L + RQ M+ + +TF + + + AA SS V+L G Sbjct: 316 ITGLIIILMDNKTFRQRMSKISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSG 375 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSR 411 E G GK L +QAIH S R GP++++NC +A E G G T + G + + Sbjct: 376 ESGTGKELFAQAIHKASPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGK 435 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E A+ GT+FL++I + + +Q+ LL+V+++ + R+ + P+DV++I T +L + Sbjct: 436 FEYANTGTIFLDEIGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKM 495 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530 V+ F LYY ++ I +PPLR R IP +V+ L + +++ + + +A Sbjct: 496 VKDGSFRLDLYYRINVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAF 555 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF--TEQATDDVSATRLSTSLSF 588 L++ +W GN EL + IE ++ + + LP + F E+ DD + S+ Sbjct: 556 LINHSWEGNLRELRNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYE 615 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E +K+ + + G + ++ +GI R+TL+RK+K + + Sbjct: 616 FEEKKKMLALMIKFNGNK-SAVAEEIGISRSTLYRKLKSYNL 656 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/451 (28%), Positives = 222/451 (49%), Gaps = 39/451 (8%) Query: 216 VISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV-LQQAIKQAHPLKHVEAT 274 VI DE+G ++ IN A +L++ + GR PAV + K LK E Sbjct: 26 VILVDEKGIIRMINRAFADLLKVSKQQAIGR--------PAVEVDHNSKWPVVLKSGEFD 77 Query: 275 FESQHQFI----DAVITLKPII-----ETQGTSFILLLHPVEQMRQLMTS---------- 315 +H+F DAV+ PI E G ++L ++++R L Sbjct: 78 IAKKHKFARTGEDAVVHRIPIYDYDSGEIVGGFGMVLFQNLKELRDLADKNKLLEKKLDH 137 Query: 316 ------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 Q+ +++ ++ + ++AAR+ VL+ GE GVGK + +QAIH Sbjct: 138 YKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDLNVLITGESGVGKEIFAQAIH 197 Query: 370 NESERAAGPYIAVNCELYGDAALAEE---FIGGDRTD-NENGRLSRLELAHGGTLFLEKI 425 NES R+ P+I VNC + L E + GG T ++ G+ + ELA GTLF ++I Sbjct: 198 NESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASKEGKPGKFELADKGTLFFDEI 257 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + ++Q+ LL+VI++G + RL ++ +DV++IA T +L LV + F L+Y + Sbjct: 258 GDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATNKNLEELVATDDFREDLFYRI 317 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + + IPPL+ R+ I L + L ++ +I +A+ L WPGN +L + Sbjct: 318 NVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGENKQISQEAVEVLQKYDWPGNIRQLKN 377 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +I+ LA++++ I SD+P L + Q ++ S + +VEK+ I ++ Sbjct: 378 IIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGLNEIVEQVEKKVIRETLELYD 437 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 +++L I R+TL+RKMK++G+ G + Sbjct: 438 FNKSMAASILNIPRSTLYRKMKKYGLKEGIY 468 >UniRef50_Q2SEE5 Sigma 54-dependent transcriptional activator n=2 Tax=Oceanospirillales RepID=Q2SEE5_HAHCH Length = 471 Score = 174 bits (441), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 222/454 (48%), Gaps = 35/454 (7%) Query: 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL--DATASQGRAITELLTLPAVLQQ 260 N L LL+S +G I D++ +++++ + +L L DA GR + E + ++++Q Sbjct: 22 NPLMDLLDSFCEGSIIVDQKARIRWLSDKYRLLLELPEDAAKYVGRPVEEAIP-NSMMRQ 80 Query: 261 AIKQAHP----LKHVEATF---------ESQHQFIDAV--------ITLKPIIETQGTSF 299 ++ P L + T+ + Q Q I + +KP++E G Sbjct: 81 VVESGRPILLDLMRIRGTWMVVTRMPIRDDQDQVIGGIGFVFYKQLDYMKPLVEKFGR-- 138 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 L P +QL + + + ++FA P R LI RQAA VLL GE G Sbjct: 139 -LRGVPTTAEKQL--ADMRQAKYSFADFIGQSPVIRELIRRARQAAELDTTVLLLGETGT 195 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELA 415 GK +L+ AIH+ S RA P++ VN ++ L EF G G T + GR+ +++LA Sbjct: 196 GKEVLAHAIHHASVRAERPFVGVNMAAIPESLLEAEFFGAAPGAYTGADRKGRIGKIQLA 255 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL+++ L++ LQ+ LL+V+++ L + R+I ++V++IA T+ +L +VE Sbjct: 256 DGGTLFLDEVGDLSLSLQTKLLRVLQEQEFEALGSNRIIRVNVRIIAATSRNLKQMVETG 315 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSC 534 F LYY L+ I +PPLR R G + LV N LR + K + +A+ L + Sbjct: 316 EFRSDLYYRLNVLPIEVPPLRDREGDVELLVGNMLRQFCDASALPFRKPNAEAMQLLRTY 375 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 WPGN EL++ +E + ++ + V+D HL + S + AE E+ Sbjct: 376 HWPGNVRELHNTLERAFIFAEGTELTVADFA-HLQGAGEKGNRREAVKPLSEAMAEAERN 434 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + A G + LGI R T + K+++H Sbjct: 435 FLKQAMSACNGNRSASAKALGISRATFYEKLQKH 468 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 174 bits (440), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 221/456 (48%), Gaps = 41/456 (8%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ---- 259 ++NA++E++D+ V D + N++A + + A G+ I T V + Sbjct: 131 RINAVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVTRVNKE 190 Query: 260 -QAIKQAHPLKHVEATFESQHQFIDAV-ITLKPII------ETQGTSFILLLHPVEQMR- 310 Q I+ H H I+A + L P + E T + L + Q Sbjct: 191 WQEIRSLH-----HQPVPGTHVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASS 245 Query: 311 --QLMTSQLGKVS---HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 Q + ++ K S + FA + + LI+ R+AA +S VLL GE G GK L + Sbjct: 246 QVQRLEKEIDKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFA 305 Query: 366 QAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELA 415 +AIH S R + +NC E++G + A F G D+ G++ E+A Sbjct: 306 KAIHEASPRIDKKFCVINCAAIPPSLFESEMFGYESGA--FTGADK----KGKIGVFEMA 359 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I L +++Q LL+V++ GV R+ I +DV++IA T L ++ Sbjct: 360 DGGTLFLDEISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHG 419 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSC 534 F LYY L+ + IPPLR RR IP LV L+ + ++ ++ K++ +A ++ Sbjct: 420 TFREDLYYRLNVVSLEIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAY 479 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 +WPGN +L ++IE + + ++ + S +PE L D +AT S++ + E+E Sbjct: 480 SWPGNIRQLKNIIERMVILTEGDTVLESAIPESLKLSSRQDQATATIGLASVT-EQTERE 538 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 II + G E + +LGI R+TL+ KM Q GI Sbjct: 539 LIIRTLKQVNGNRSEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_UPI0001972FEB sigma-54 factor, interaction region n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001972FEB Length = 638 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 133/462 (28%), Positives = 224/462 (48%), Gaps = 48/462 (10%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 S + + +L ++ + + + V+S+D G+L F N A R+L Sbjct: 198 SSMERKDEYLTTISTTINRISNAVLSFDTSGSLLFSNETAERMLP--------------- 242 Query: 253 TLPAVLQQAIKQAHPLKHV-------EATFESQHQFID-----AVITLKPIIETQGTSFI 300 TL L +A H+ +A + Q + V P+I ++ I Sbjct: 243 TLRECLFSG--EAESFLHIGRRPIEGKANLHKKQQILRLGGKIYVAEYLPVIVSRRLKSI 300 Query: 301 LLL-------HPVEQMRQLMTSQLGKVSHT-FAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 +++ E+ +L S+ G + + F + + + IH R+ ARS VL Sbjct: 301 VVIVSSENSIQSAEKRLRLSKSERGYTAKSHFEDIIGESRVLKDTIHLARKYARSQSSVL 360 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGR 408 + GE G GK L +Q+IHNES RA P++A+NC + L E G G T N+ G+ Sbjct: 361 ITGETGTGKELFAQSIHNESSRADEPFVAINCAALPQSLLESELFGYVKGAFTGANKEGK 420 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + E+AH GT+FL++I + + +Q+ LL+V+++ + RL R+IP+D+++I+ T +L Sbjct: 421 MGIFEMAHRGTVFLDEIGEMDLNVQAKLLRVLQEREVCRLGDDRIIPVDIRIISATNKNL 480 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 LVEQ F L Y L+ E+ +PPLR R G +P LVN + KR + + DA+ Sbjct: 481 YELVEQKLFREDLLYRLNVLELNLPPLRSRTGDVPLLVNAYM----KRQNRPVTFLPDAM 536 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L PGN +L++++E + SD I S L +++F+ + L ++ Sbjct: 537 ELLSREPCPGNVRQLFNLLERIVTLSDGREISASWL-KNIFSFSGKTEPLPGLLEDTV-- 593 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+ I +A + G + + LGI TLWRKMK++G+ Sbjct: 594 GNCEQTEIEHALRKNHGNRAKTAKDLGISTATLWRKMKKYGL 635 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 138/462 (29%), Positives = 223/462 (48%), Gaps = 31/462 (6%) Query: 197 ETNRHLNQ-LNALLESMDDGVISWDEQGNLQFINAQAAR---VLRLDATASQGRAITELL 252 E RH+ + L ++ +G+ DE G +Q N +R V + +A + + E Sbjct: 159 EEARHVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQRAENVIENT 218 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFI----DAVITLKPIIETQGTSFIL-LLHPVE 307 LP VL+ + + + + ++ H+ VI ++ +G S I +L + Sbjct: 219 RLPVVLKTGVPERNQVHRLQGQNLVVHRMPIWKQGRVIGAVGMLIHEGISDIYKILERFD 278 Query: 308 Q----MRQLMTSQLGKVSHTFAHMPQDDP--QTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 Q ++ L + K H + + P +T+++ R+AARS VL+ GE GVGK Sbjct: 279 QKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKM---ARKAARSKASVLITGESGVGK 335 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHG 417 ++AIH GP+I+VNC D L E G G T +NG+ + ELA+ Sbjct: 336 EQFARAIHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNGKAGKFELANH 395 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I +++ Q +L+V+++ I R+ IP+D ++IA T DL +V + F Sbjct: 396 GTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKDLKQMVREGTF 455 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LY+ LH I IPPLR R+ IP +V L+ L + ++ K +D + L + W Sbjct: 456 REDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKEVLRLMFHYNW 515 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLF---TEQAT-----DDVSATRLSTSLSF 588 PGN EL +V+E L SD+ IR DLPE + EQ + A + + + Sbjct: 516 PGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLPAKQEAMKVVR 575 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E E+ I + G + +ALLGI R TL+ K+ + I Sbjct: 576 DEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/441 (28%), Positives = 212/441 (48%), Gaps = 21/441 (4%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL-----PAVLQQ 260 N +L+S+++GV + D LQ +NA A ++ ++GR +L ++Q Sbjct: 11 NIVLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPIRQ 70 Query: 261 AIKQAHPLKHVEA-TFESQHQFIDAVITLKPIIETQGTSF--ILLLHPVEQMRQLMTSQL 317 + P+ + ++ + + I+ + + +G + + + ++ +L Sbjct: 71 TLTTGEPVVNRRTYILNAKEECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCREL- 129 Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 K +TF + P + + A+S VL+ GE G GK L ++ +HN S R G Sbjct: 130 -KSHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRCRG 188 Query: 378 PYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++ VNC D L EF G G TD + R R ELAH G++FL++I ++ LQ Sbjct: 189 QFVPVNCAALPDTLLESEFFGYEPGAFTDAKRSRSGRFELAHCGSIFLDEIGDISQALQV 248 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ + L + + IDV+VI T +L LVEQ F R LYY + ++ IPP Sbjct: 249 RLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRIPP 308 Query: 495 LRMRRGSIPALVN---NKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLA 551 LR RR IP L++ NK L+ + + D + RL +PGN EL +++E Sbjct: 309 LRERRDDIPLLIDHFINKFNQLQDKDIA--GVTDSVMNRLTEYDYPGNVRELENIVERAF 366 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + I + LP L Q+ + + + L+ E+E+ I A Q+ G + + Sbjct: 367 VFCQGALIEMRHLPSELRDTQSRNLLGDKQ---GLTLKEMERALITRALQINKGHRKNSA 423 Query: 612 ALLGIGRTTLWRKMKQHGIDA 632 LGI +TL+RKMK ID+ Sbjct: 424 RTLGINPSTLYRKMKALEIDS 444 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 173 bits (438), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 221/459 (48%), Gaps = 45/459 (9%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 QL +L + DGVI+ D G + IN A + +L T G+ I +++ K Sbjct: 200 QLRTILSFIHDGVIAIDNTGKITVINPSAESIFKLKNTQVIGKNIKQVIP-------NTK 252 Query: 264 QAHPLKHVEATFES-QHQFIDAVITLKPIIETQGTSFILL--------LHPVEQ-MRQLM 313 LKH +A E Q+ V+T + IE G ++ + EQ +R + Sbjct: 253 MLDVLKHGKAEIEQLQNTPSGMVVTNRVPIEINGEIMGVVATFKEAGRIQQTEQKIRTKL 312 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 SQ ++F ++ DP+ RR+I ++ AR+ VL+ E G GK L +Q+IH S Sbjct: 313 YSQGLYAKYSFENIMAWDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIHQASS 372 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG-------GDRTDNENGRLSRLELAHGGTLFLEKIE 426 R GP++A+NC L E G G R + G+ +ELAHGGTLFL++I Sbjct: 373 RCRGPFVAINCSALPTQLLESELFGYVEGAFTGARKE---GKPGLIELAHGGTLFLDEIG 429 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + LQ+ LL+V+++ + RL A + +P+D++++A T A L V + +F L++ L+ Sbjct: 430 DMELTLQARLLRVLEERQVMRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMDLFHRLN 489 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR--LVSCAWPGNDFELY 544 ++IPPLR RR I L L ++ R I+ A A+ L+ +WPGN EL Sbjct: 490 VLNLSIPPLRHRREDIIPLAEYFLAEFANKYGQR-PIELTAAAKDILLRYSWPGNVRELR 548 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDD---------------VSATRLSTSLSFA 589 +++E ++L + + + L + L ++ V+ R S Sbjct: 549 NIMERISLVYEEAQDVSAILRDFLGNSDYCNNSDYSTLELAKTGMLAVTPERFLLPQSIR 608 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +++++ I+ GG + + LGI R TL R ++Q Sbjct: 609 DMKRQLAISTLAACGGNKSKAAKQLGITRATLDRLLRQQ 647 >UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular organisms RepID=Q47HA8_DECAR Length = 679 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 164/631 (25%), Positives = 269/631 (42%), Gaps = 27/631 (4%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G G+ ++ SW R A G + R + + LE E + Sbjct: 47 GVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDKIHQLRARSHDLYEAAKPVLETLREIL 106 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + D + IL NG+ + + G +E +IGT A+ + QAV Sbjct: 107 RESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTIATHQAV 166 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + A +H+ + +W A P+ D GR L G + ++ E L L ++ A+++ Sbjct: 167 QIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEG 226 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGN-LQFINAQAARVLRLDATASQGR 246 +L R Q LLE D S+ GN + Q R+++ Q R Sbjct: 227 IL--------ARRDAEQHGRLLEHATD---SFSRYGNDCVVLFDQRGRIVKTCGCMQQAR 275 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 + + LP + + H + SQ L P+ G LL+ P+ Sbjct: 276 KMYGV-RLPFEVGSQVTALDFAVHPDERL-SQTPLWLRPEWLHPVRSRDGDLGTLLVIPI 333 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS----SFPVLLCGEEGVGKA 362 + S + T + + T + I + A+ PVLL GE G GK Sbjct: 334 GTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAGKE 393 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRL-SRLELAHGG 418 + ++AIH S + GP+IAVNC LA E G G T G L + E A GG Sbjct: 394 VFARAIHKASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQADGG 453 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I + +++Q LL+V++ GV+ RL + + V++IA T DL RF Sbjct: 454 TLFLDEIGEMPLDMQPHLLRVLQDGVVVRLGDTKERKVAVRIIAATNRDLQADSSTGRFR 513 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWP 537 L++ L + +PPLR R A++ + + L +++ K + + L L+ WP Sbjct: 514 EDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLAPEVLHHLLRYRWP 573 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS---FAEVEKE 594 GN EL +V E + SD+ RI S LP H+ ++ ++ +++ AE+E+ Sbjct: 574 GNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEMERA 633 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 AI A + G + + LGI R+TL+ K+ Sbjct: 634 AINAAVANSHGNLSMAARNLGISRSTLYVKL 664 >UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Gammaproteobacteria RepID=A6VWJ2_MARMS Length = 659 Score = 172 bits (436), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 166/662 (25%), Positives = 287/662 (43%), Gaps = 74/662 (11%) Query: 9 GRGISP--LIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAM---LTLGQAALED 63 G+ SP +I SW+RC + + P A+ VT + + ++ L + +A +E Sbjct: 24 GKHYSPHEVIGRSWQRCLSEYGLDP-SQPRPARIVTHQILREHQDSVDEFLNVARAGVEQ 82 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 + +A L + D + G ++L G G +E GTCA+ Sbjct: 83 LYTQIAGLGYVLLLSDYRGITVQFLGSKNDDERLHRAGLYLGADWSEQYAGTCAVGTCIQ 142 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC------PVEQTTAADLPL 177 QA+ HF A P+ D G+L + ++ P Q A L L Sbjct: 143 EQQALTCHRVDHFDSSHIGLTCTAAPIKDPSGQLLAVLDISALDSSRTPDSQNFA--LHL 200 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 T AR L+ D+ RH + D+ L +N Q L Sbjct: 201 TQLYAR-----LIEDAYFLRRYRH------------SLIFKCDQSRELVQVNGQCLFALN 243 Query: 238 LD----ATASQGRAI---TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 D A + GR++ ++ LP V + + V +ES+ D + + Sbjct: 244 EDGEVLAANTAGRSLLSQCHIIDLPTVYLPTLLECQWRDIVSINYESK----DGIRAFR- 298 Query: 291 IIETQGTSFILLLHPV------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 + TQ T F +L+ P Q+ Q++ +Q V + DDP R+ I ++ Sbjct: 299 LSGTQQTLFGMLIEPATSVPYQPQLSQILATQEESVPQ-LDGLSADDPAMRKTISLAKRL 357 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG------ 398 +L+ G+ G GK +L+QAIH+ S RA PYIAVNC ++ + E G Sbjct: 358 RHRDMNLLILGDTGTGKEVLAQAIHDTSHRALKPYIAVNCAAIPESLIESELFGYAPGTF 417 Query: 399 -GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 G R G + + A GGTLFL++I + + LQ+ LL+V+ +G + L + + I +D Sbjct: 418 TGGRAKGAKGLIQQ---ASGGTLFLDEIGDMPLHLQTRLLRVLAEGQVMPLGSLQAIDVD 474 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 V+V+A T +LA L+++ RF L+Y ++ + +P L+ R P L+ + L K+ Sbjct: 475 VRVLAATHCNLAQLIKEGRFREDLFYRINGATLNLPTLKA-RADKPYLI----QMLLKKI 529 Query: 518 STRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ----- 572 + +++ DA++ L++ WPGN +L + + + I + LPE F Q Sbjct: 530 NPAVRLRADAMSALLAYEWPGNIRQLVNTLTFADAICETDEISIQHLPEEFFVHQNGLVE 589 Query: 573 ---ATDDVSATRLST-SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++ T LS + E++ ++N + + ++ LG+ R T++R+M +H Sbjct: 590 PLIPLHPITPTYEGCQKLSNDDSEQQFLLNLLRQQRWNVSAVAKQLGVSRPTVYRRMTKH 649 Query: 629 GI 630 I Sbjct: 650 QI 651 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 172 bits (436), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 131/473 (27%), Positives = 225/473 (47%), Gaps = 39/473 (8%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + E R ++L +LE+ DG+ D QG + +N+ R+ + G+ E++ Sbjct: 26 ILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQEMVDK 85 Query: 255 ------PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG------------ 296 A+ K+ + E Q I A T P+++ +G Sbjct: 86 GFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMA--TGIPVMDDEGNIKRVVVNVRDI 143 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHT-FAHMPQDD-----PQTRRLIHFGRQAARSSFP 350 T + L +E+ +QL ++ H+ D+ P+T+R++ Q A+ Sbjct: 144 TEIVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDST 203 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG-------GDRTD 403 VL+ GE GVGK +++ IH S R+ GP I +NC + L E G G R Sbjct: 204 VLITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGAR-- 261 Query: 404 NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 + G+ ELA GTLFL+++ L++ LQ LL+V++ + R+ + IP+DV+++A Sbjct: 262 -KQGKPGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAA 320 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI 523 T DL +V + +F LYY L+ I IPPLR RR IP L + L + K++ + Sbjct: 321 TNKDLMEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFNKRF 380 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL--FTEQATDDVSATR 581 D + RL + WPGN EL +VIE + + + + IR LP ++ + D + + Sbjct: 381 APDVIDRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMFSEI 440 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + + VEK +I A G ++++ L + ++T+ RK+K++ + AGQ Sbjct: 441 MPLKKAVEHVEKH-LIEQALKKYGSTRKVARALKVNQSTIVRKIKKYKLSAGQ 492 >UniRef50_B2A7L9 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7L9_NATTJ Length = 558 Score = 172 bits (435), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 140/495 (28%), Positives = 233/495 (47%), Gaps = 79/495 (15%) Query: 185 VGNLLL--TDSLLAETNRHLNQLNALLESM-------DDGVISWDEQGNLQFINAQAARV 235 VG+ +L + + +AE NR+L + ALL S+ + +D++G Sbjct: 96 VGDYVLCCSKAEVAERNRNLEE--ALLASLPYIAKVAGGQAVLFDDEGK----------- 142 Query: 236 LRLDATASQGRAITELL-TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLK-PIIE 293 RL+A S+G +LL + ++ +K P+ + FI ++ PI + Sbjct: 143 -RLNAVNSKGDVNNQLLGKVSEAAKECMKAQKPVL-------GKSTFISGASAVRIPITK 194 Query: 294 TQGTSF------ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 G F + +E++++ T++ + F + + Q R+ G AA S Sbjct: 195 EIGFGFNNEDTALKNQKLLEEVKKYQTAK-----YNFTDIIGESQQMRKAKELGEAAASS 249 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFI 397 VL+CGE G GK L +Q+IHN S R + P+IA+NC L+G A F Sbjct: 250 DSSVLICGETGTGKELFAQSIHNASYRCSKPFIAINCAALPPSLIESNLFGYVEGA--FT 307 Query: 398 GGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 G + G E A+ GTLFL++I + ++LQS LL+V+++ +TR+ R++IP++ Sbjct: 308 GAKK----GGATGVFEKANNGTLFLDEISEMDLDLQSKLLRVLQEKEVTRIGGRKVIPLN 363 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 +++IA T +L ++++ +F R L++ L+ E+ +PPLR + IP LVN + + F Sbjct: 364 LRIIAATNRNLEDMIQKGQFRRDLFFRLNVIEVKLPPLRDMKEDIPLLVNETIIKMNSIF 423 Query: 518 STRLK-IDDDALARLVSCAWPGNDFELYSVIEN-LALSSDNGRIRVSDLPEHL------- 568 +K +D +AL L++ WPGN ELY+ IE L D+ IR L Sbjct: 424 GKAIKGVDKEALEMLINYDWPGNVRELYNCIERAFNLIGDDNYIRKKHLNFKFNNGNGIT 483 Query: 569 ---FTEQATD--------DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 + E+ D D + S A EK+ I + G + + L I Sbjct: 484 AQNYMEEIEDTEGNPINLDNDTGQRSLDDIVANYEKQVIEAVLKEVKGIRAKAAKRLNIS 543 Query: 618 RTTLWRKMKQHGIDA 632 TLWRKMK+ I+ Sbjct: 544 PATLWRKMKKLNIEG 558 >UniRef50_B2S3B3 Response regulatory protein n=28 Tax=Spirochaetales RepID=B2S3B3_TREPS Length = 458 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 177/325 (54%), Gaps = 9/325 (2%) Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 Q R+L+ Q+G + +F ++ + P ++ ++AA S VL+ GE GVGK L++ A Sbjct: 126 QHRELI-KQIGNRT-SFENIVGESPAMNKVFDMVKKAAASKASVLITGESGVGKELIANA 183 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEK 424 IHN S R A P I V+C + + L E G +R T N R ELAH G++FL++ Sbjct: 184 IHNLSPRKAKPLIKVHCASFAEGVLESELFGHERGAFTGAVNRMKGRFELAHEGSMFLDE 243 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I +++ +Q LL+V+++ R+ R I +DV+VI+ T +L +++N F LYY Sbjct: 244 IGEVSMAVQIKLLRVLQERSFERVGGRETIKVDVRVISATNRNLLEEIKRNLFREDLYYR 303 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFEL 543 L+ I +P LR R+ +P L+ L+ + + ++ ID A + L + WPGN +L Sbjct: 304 LNVVHIHVPALRERKEDLPLLIATFLKEIAEENGKKITSIDPQAQSALHAYDWPGNIRQL 363 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 + IE+ + S I + DL E + ++ + S+ R+ +S + EKE I+ + Sbjct: 364 RNCIESAVIMSSGPVIHIEDLSEPI---RSLGETSSIRIPIGVSMEDAEKEIILQTLEAQ 420 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQH 628 G + + +LGIGR TL+ K+ Q+ Sbjct: 421 KGNKSKTADVLGIGRKTLYLKLDQY 445 >UniRef50_A6TVV5 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Bacteria RepID=A6TVV5_ALKMQ Length = 446 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/447 (26%), Positives = 213/447 (47%), Gaps = 38/447 (8%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL---LTLPAVLQQAIKQ 264 + +S+ DGV+ DE +++IN R+ +++ G+++ E+ LP+V++ ++ Sbjct: 10 IFDSLYDGVLIADENSTVRYINPSYTRITKVEKEDILGKSLIEIRPGAKLPSVIKNGNQR 69 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQ----GTSFILLLHPVEQMRQLMT------ 314 + V+ ++ + + PI E G S + ++ + ++ + + Sbjct: 70 LRIPRKVDG--------VEYFVNMVPIRENGEVIGGISILNEINDIYKLTEALNQSNIMI 121 Query: 315 -------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 ++GK ++F + D + + ++ A + VL GE G GK L A Sbjct: 122 QKLQKRMKRMGKAKYSFDDIISVDENSMNSKNLAKKIANKNSNVLTTGESGTGKELYVNA 181 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLE 423 IHN S R GP+IAVNC + L E G + + G++ E+A+GGTLFL+ Sbjct: 182 IHNASNRQNGPFIAVNCATFESNLLESELFGYEEGSFTGAKKGGKIGLFEVANGGTLFLD 241 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + LQ+ LL+ +++ I R+ I ID+++I + +L +VE+N+F LYY Sbjct: 242 EISEMNYGLQAKLLRTLQENTIRRIGGLEEISIDIRLICASNKNLKNMVEENKFREDLYY 301 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 + F I I PLR RR I L + L + + +++I DDA+ L + WPGN EL Sbjct: 302 RIAVFPINILPLRYRRKDIEPLALHFLNEMNTKTERQVEISDDAMRILQNYEWPGNIREL 361 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR----LSTSLSFAEVEKEAIINA 599 + IE + I++ LP+ + E ++ + + E++K +I Sbjct: 362 KNAIEFAIHMVEENIIKLEHLPKIIQIEGIKKNIVLPKKLEEIIKETEAMEIKKAMLIYG 421 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMK 626 V G + + + LGI TL+ K+K Sbjct: 422 NTVDGKK--KAAEALGISLATLYNKLK 446 >UniRef50_A6G018 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G018_9DELT Length = 628 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 10/305 (3%) Query: 332 PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAA 391 PQ ++L F + A ++ VL+ GE G GK L ++ IH S RA P++A+NC + Sbjct: 322 PQMKKLHVFLERVAATNATVLVNGESGTGKELAARMIHARSPRAERPFVAINCAAVPENL 381 Query: 392 LAEEFIGGDRTDNENGRLSR----LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITR 447 L EF G ++ G ++R E AH GTLFL++I +A Q+ +L+V++ TR Sbjct: 382 LESEFFGHEK-GAFTGAVARHQGVFERAHTGTLFLDEIAEMAPATQARMLRVLENRSFTR 440 Query: 448 LDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVN 507 + + +DV+++A T DL LV +F L Y L +PPLR RRG IP LV Sbjct: 441 VGGTEEVKVDVRLVAATHRDLRKLVADGQFREDLLYRLSVIHTKLPPLRERRGDIPELVR 500 Query: 508 NKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE 566 + L ++ + DDALA LV+ WPGN EL +V+E + D + + DLP Sbjct: 501 HFCSVLGDDMGRHVETVADDALAVLVNYRWPGNVRELRNVVERALVLGDGPVLELDDLPP 560 Query: 567 HLFTEQATDDVSATRLSTS----LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 L D S L AE+E++AI A + TGG +ALLGI RTTL+ Sbjct: 561 ELQHAGPHPDQPGASPVVSPQKVLPLAELEQQAIAAALEATGGNKARAAALLGIDRTTLY 620 Query: 623 RKMKQ 627 RK+K Sbjct: 621 RKLKN 625 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 171 bits (433), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 158/303 (52%), Gaps = 14/303 (4%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 RRL A S VLL GE G GK + ++AIH+ S + GP++AVNC ++ + Sbjct: 262 RRLFQMLPDVAASEASVLLTGESGTGKEIFARAIHSLSPSSKGPFVAVNCSAIAESLIEA 321 Query: 395 EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 EF G G T + R R E+A GGT+FL+++ L E Q LL+V++Q + R+ Sbjct: 322 EFFGHEKGSFTGADQSRAGRFEVAKGGTIFLDEVAELRPEHQVKLLRVLEQKMFERVGGT 381 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 + IP++ +VI+ T D+ ++E+ F LYY L + +PPLR R IP LV + +R Sbjct: 382 KTIPMEARVISATNLDITAMLEERTFREDLYYRLRTVPMHLPPLRERVEDIPLLVQHFIR 441 Query: 512 SLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 K+ ++ +D L + WPGN EL V+E + I + LP Sbjct: 442 MFNKKHRKEVRALDPKVLNFFMEYHWPGNVRELERVMEYAYVFVKGPVIMMKHLP----- 496 Query: 571 EQATDDVSATRLS---TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 ++ +A R S + E+ AI+ A + GG+ QE + LLG+ RT+LWR+MK Sbjct: 497 --TIEEFAAKRKSGIPQDIDEEASERRAILRALEKAGGKRQEAANLLGMSRTSLWRRMKS 554 Query: 628 HGI 630 G+ Sbjct: 555 LGM 557 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 138/451 (30%), Positives = 217/451 (48%), Gaps = 33/451 (7%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +A+L+++ DG++ D+QG ++ IN + R+ + A G+ + E+ A L +K Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRP-EAQLVSTLKD- 61 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIE----------TQGTSFIL-LLHPVEQMRQLMT 314 K V + + ++ + PI + +G +L L +EQ +Q + Sbjct: 62 ---KSVRVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQ 118 Query: 315 SQLGKV------SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 KV +H F + + + + R+AA + FPVL+ GE G GK L +QAI Sbjct: 119 WLQQKVEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAI 178 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEK 424 H + A+ P++ +NC L E G G T +NG+L ELA GTLFL++ Sbjct: 179 HRGGKNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDE 238 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L + LQS LL+V+++G I RL A + + ++IA T +LA LV + F LYY Sbjct: 239 IGELPLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYR 298 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSL-EKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L F++ IPPLR R+ IP L L S + + ++ I D+AL RL WPGN EL Sbjct: 299 LCVFQLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVREL 358 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQ---ATDDVSATRLSTSLSFAEVEKEAIINAA 600 + ++ D + S LP HL T+Q +T S E E++ I N Sbjct: 359 KNALQFALCMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNVL 418 Query: 601 QVTGGRIQ---EMSALLGIGRTTLWRKMKQH 628 ++ + + L I TL+ KMK+H Sbjct: 419 ANCDNHLEGKKQAAKRLNISLATLYNKMKKH 449 >UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing protein n=12 Tax=Proteobacteria RepID=B2ILN3_BEII9 Length = 680 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 168/649 (25%), Positives = 282/649 (43%), Gaps = 66/649 (10%) Query: 15 LIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 LI SW RC+ + P + T ++ ++ + A +++ Sbjct: 40 LIDQSWRRCHDADIDHRRNQAPPPVKQDTLHALRDECAELIEASAPVMASARDFLGETST 99 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + + T ILS+ GD + G +E GT A+ A G+ ++ ++ Sbjct: 100 VMVLTNSTGLILSQEGDVSLRGAAENVHLLPGANWSEFTCGTNAIGTAIEIGRPIQIHSN 159 Query: 134 QHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 +H+ + W+ A+ + + G G I ++ + L L +A A + + Sbjct: 160 EHYCSGIKRWSCSASIIKNPCDGSTLGVIDVSGLSHSYSRHSLALVVATAGRI------E 213 Query: 193 SLLAETNRHLNQ------LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 S +A+ L ++ L DG++ D G N AA V+ D A Q Sbjct: 214 SRIAQMEMDLRYRLLEGCMDRLTAHSTDGIVVLDRHGRAIKANTHAA-VMLADLGAPQSL 272 Query: 247 AITELLTLPAVLQQAIKQAHPL-KHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 L +L ++ H L +H+ + + L P+ ++L P Sbjct: 273 TRNNLFSL----TLDWRRGHDLPEHLPPWIQKEW--------LTPMNAGGKRLGVILTIP 320 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLI--------------HFGRQAARSSFPV 351 RQ +++L + S A +P +P+ R+ RQ A+SS PV Sbjct: 321 ---NRQGASAKLARASTRIA-LPPSEPERTRIFPKLVGQAPALLLAAARARQIAKSSVPV 376 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDR 401 LL GE GVGK + ++ +H S GP+IA+NC EL+G A F G R Sbjct: 377 LLLGETGVGKEVFARDLHEASAVGKGPFIALNCGGLSRDLLTSELFGYAE--GSFTGARR 434 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 G + ++E A+GGTLFL++I L +LQ L+V+++ I R+ + ++ +++ Sbjct: 435 ----GGMMGKIEAANGGTLFLDEIGELPTDLQPLFLRVLEEREICRIGEVQPRKVNFRLV 490 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T DL M + +RF LYY L ITIPPLR R IP L + K++ Sbjct: 491 AATNRDLRMETQASRFRMDLYYRLSVISITIPPLRERSEDIPLLAEHFTALFTKQYGLPS 550 Query: 522 K-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL--FTEQATDDVS 578 + I D + L WPGN EL +VIE + L+S N + +DLP T + + Sbjct: 551 RHISADIMNALQQHDWPGNIRELRNVIEGILLTSANETLTKADLPPEFSALTNKLPSTGN 610 Query: 579 ATRLSTSLSFAE-VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + S++L+ E E+E I+ + G + ++ LGI ++TL+ KMK Sbjct: 611 SDTSSSALTPIENAERETIVRMLRTHHGNMTAVARELGIAKSTLYVKMK 659 >UniRef50_A5CZF6 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CZF6_PELTS Length = 485 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 167/316 (52%), Gaps = 19/316 (6%) Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 + PQ R +I A++ +L+ GE G GK ++++ IH S +A GP+I +NC Sbjct: 165 ESPQMREIIKNIDTIAKTHSTILITGESGTGKEVIARYIHKHSLQAEGPFIPINCASIPH 224 Query: 390 AALAEEF---IGGDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 L EF +GG T N G+ E+A+ GTLFL++I L + +Q LL+V++ G I Sbjct: 225 ELLESEFFGYVGGAFTGANPQGKPGLFEIANNGTLFLDEIAELPLTMQPKLLRVLESGEI 284 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 R+ +I +V++IA T DL +V QN F LYY L+ I IPPLR R I AL Sbjct: 285 KRVGGTDIIRTNVRLIAATNKDLKTMVRQNLFRNDLYYRLNVLPINIPPLRERPEDIVAL 344 Query: 506 VNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP 565 L + K+++ + + + A+ ++ +WPGN EL +V+E LA++S + I ++ Sbjct: 345 SKRFLEYINKKYNLKKRFTEQAINAFLNYSWPGNVRELRNVVERLAITSPDDNI--GNIN 402 Query: 566 EHLFTEQATDDVSATRLSTSL------------SF-AEVEKEAIINAAQVTGGRIQEMSA 612 HL + + + S T L SF +VE E I + G++ E + Sbjct: 403 IHLLLDGNSLEESNITTGTYLPHENKIYQGTLKSFLKKVEAEYIKQVLDICNGKVGEAAK 462 Query: 613 LLGIGRTTLWRKMKQH 628 LLGI RT L+RK+K + Sbjct: 463 LLGIHRTMLYRKIKNN 478 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 124/464 (26%), Positives = 217/464 (46%), Gaps = 27/464 (5%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I +++ + LL A + + + L++++ +GV++ D + F + A R+ L A Sbjct: 127 IIKDLVHDLLNRGYYASFSLYKANIERLIDNLHEGVLAHDLGRKIFFFSKGAERITGLSA 186 Query: 241 TASQGRAITELLTLPAVLQQAIK----------QAHPLKHVEATFESQHQFIDAVITLKP 290 G+ ++ +P + + Q V E Q + +D +T+ P Sbjct: 187 VDVIGKNCHDVF-VPRLCGENCSFCDGCEPPTFQKKSYSTVAPEIEGQRKELD--VTVVP 243 Query: 291 IIETQG--TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 + + G + L ++ + Q G+ FA + P+ R L H R + Sbjct: 244 LRDPAGRIQGVVAALADQTAFKEAVRGQKGE--DGFAGIIGRTPEMRSLFHQIRDLSVYD 301 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE 405 PV + GE G GK L+++AIH ES R GP++ +NC + + E G G + Sbjct: 302 VPVNISGETGTGKELVARAIHGESTRRNGPFVPINCGALPEGLVESELFGHVRGSFSGAV 361 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 + R ELAH GT+FL+++ L + Q LL+ +++GV+ ++ + + +DV+VI+ T Sbjct: 362 RDKKGRFELAHNGTIFLDEVAELPMSTQVKLLRFLQEGVLEKVGSEKQTSVDVRVISATN 421 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKID 524 +L V + F LYY L+ I +PPLRMR+ IP L N +R T + I Sbjct: 422 KNLKKEVAKGTFREDLYYRLNVVPIHLPPLRMRKNDIPLLANYFVRHAAMGARTGNVTIT 481 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 DDA+ L AWPGN EL ++I+ L + + +I + LP + + R + Sbjct: 482 DDAMGLLAEYAWPGNVRELQNIIQFLVIKASGNKITAAHLPPEIQGDGTPLPQKRGRRN- 540 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +++ ++ A GG + + LLG+GR TL+R + H Sbjct: 541 -----KLDTGSVETALAKAGGNKAKAARLLGVGRATLYRFLNDH 579 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 130/463 (28%), Positives = 220/463 (47%), Gaps = 63/463 (13%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV-LQQAI 262 ++ A++ ++ +G++ D G L IN A ++L + A G++I ++ P + L Sbjct: 191 KIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIGKSIDKVA--PEIKLDDVF 248 Query: 263 KQAHPLKHVEATFES------------QHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 K+ PL +V + Q + I AV T++ Q + +R Sbjct: 249 KRGKPLLNVAQKTKQGMLLVNRIPVVHQGELIGAVATIQDAQAVQKAE--------KAIR 300 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + S+ TF H+ + +LI + A++ +L+ GE G GK L +Q+IHN Sbjct: 301 HRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGETGTGKELFAQSIHN 360 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIE 426 S R P++AVNC ++ L E G + + G+ ELAH GT+FL++I Sbjct: 361 ASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLFELAHRGTIFLDEIG 420 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 +++ LQS LL+V+++ + RL + +IPIDV++IA T DL +V+ F + LYY L+ Sbjct: 421 EMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVKDGLFRQDLYYRLN 480 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA--------WPG 538 I +PPLR R +P L + F K+D + +++S WPG Sbjct: 481 VLSIELPPLRERLDDLPDLF--------RFFLKNYKLDKQLIEKVLSIMLPVLCHHNWPG 532 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF-------AEV 591 N EL ++ E +++ L H+ ++ +V + + EV Sbjct: 533 NIRELENIAERVSVL----------LKAHVTMDEVLAEVKKELFGSHIEILDSTDLTKEV 582 Query: 592 ---EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E++ I+ + G + +ALLGI RTTLWRK+K +GID Sbjct: 583 ENWERQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGID 625 >UniRef50_B5YI42 AdnA n=3 Tax=Bacteria RepID=B5YI42_THEYD Length = 324 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 101/314 (32%), Positives = 165/314 (52%), Gaps = 12/314 (3%) Query: 333 QTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL 392 Q +R++ F + +++ L+ GE G GK L+++ IH +S RA P+I VNC L Sbjct: 8 QIQRILTFIDKLSKTDTTALIMGESGTGKELVAKMIHQKSSRAEKPFIPVNCAAIPSELL 67 Query: 393 AEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G ++ T +N R R ELA+ GT+FL++I + + LQ +L+VI++ R+ Sbjct: 68 ESELFGHEKGAFTGAQNCRYGRFELANEGTIFLDEIGDMPLHLQVKILRVIQEKTFERIG 127 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 R I ++V++IA T DL V++ RF L++ L+ + IPPLR R+ IP L Sbjct: 128 GTRPIQVNVRIIAATNKDLENEVKEGRFREDLFWRLNVVPVVIPPLRERKEDIPLLCEYF 187 Query: 510 LRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL- 568 + +F L+I + + ++ WPGN EL ++IE L + ++ G I + D+PE + Sbjct: 188 INKFSHKFGYSLQIKPEVMQIFLNYTWPGNVRELENLIERLYVLNEGGNINIKDIPERIR 247 Query: 569 FTEQA------TDDVSATRLSTSLS--FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 F E + DD++ L+ E EK+ I++A + G + L I RTT Sbjct: 248 FGENSFQKELIPDDLNPFSSGIDLNEVLKEYEKKLILHALNLHGWIKSRAAKYLNINRTT 307 Query: 621 LWRKMKQHGIDAGQ 634 L KMK+ I + Sbjct: 308 LIEKMKRLNIKDNE 321 >UniRef50_A1HLS8 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HLS8_9FIRM Length = 690 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 45/474 (9%) Query: 177 LTLAIAREVGNLLLTDSLLAETNRHL----NQLNALLESMDDGVISWDEQGNLQFINAQA 232 LTL +RE+ + L + +H+ NQ+ +L ++ D +++ D GN++ +N A Sbjct: 189 LTLRYSREI---VRRTERLQQAVKHIEALHNQIRTVLNTVQDALVAIDNNGNIRVLNDVA 245 Query: 233 ARVLRLDATASQGRAITELLT-LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 R+ G+ + ++ L L + V+ ++ H +T+ P+ Sbjct: 246 RRLAVSSEDGPTGKWLFDVFPGLRGCLSSRYEVVAGKNLVQMAGKTYH------VTVSPV 299 Query: 292 IETQGTS--FILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 ++ G + ++ L V ++R + ++ +TF + P R I R Sbjct: 300 KDSGGMTDGCVVALRDVTDVMRMESEVRSALKARGHLARYTFDDILGISPAIRATIQTAR 359 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT 402 + A S VL+ GE G GK L + +IHN S RA GP++A NC + + E G + Sbjct: 360 KLAASDLNVLILGENGTGKELFAHSIHNASGRAGGPFVAANCAALPASLIESELFGYEEG 419 Query: 403 D----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 G+ +E AHGGT+FL++I ++ E Q+ LL+VI++ + RL R+IP+DV Sbjct: 420 AFTGAKRGGKPGLIEQAHGGTIFLDEIGDISPEAQARLLRVIQEKEVMRLGCTRIIPVDV 479 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA T DL LV Q +F + LYY L + +PPLR R+ IP L LR E S Sbjct: 480 RIIAATNRDLKELVRQQKFRQDLYYRLFVAPLPVPPLRERKQDIPYLTCQFLR--ENGLS 537 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG---RIRVSDLPEHLFTEQATD 575 + +DD+ LV+ WPGN EL SVI+ A+ +D+ R V D + + Sbjct: 538 ADI-LDDELADALVAYDWPGNVRELQSVIQYAAVIADSPAAFRQAVRDRIGGVRERPSRL 596 Query: 576 DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 V+ R L FA ++ I+ A+ G +GR L R+M + G Sbjct: 597 PVNLDRQELPLYFALLD---ILREAKALG---------YALGRGQLARRMAERG 638 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 221/471 (46%), Gaps = 46/471 (9%) Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ 259 + L A+ +S+ +G + DE+G + N L +D + GR TE + + + + Sbjct: 13 KDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHCTESV-VNSRMH 71 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI-----LLLHPVEQMRQLMT 314 + P H I + ++ I +G I +L V+ + +L + Sbjct: 72 IVARTGKP------EINQSHNIIGKKMVVQRIPIKRGGRVIAVFGQVLFKDVKDLSRLAS 125 Query: 315 S----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 L +T + + L +AA + +PVL+CGE G Sbjct: 126 ELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLICGESG 185 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG-------GDRTDNENGRLSR 411 GK L +QAIH+ S R P++ +NC L E G G R+D G+ + Sbjct: 186 TGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSD---GKPGK 242 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 ELAH GTLFL+++ L +E+Q LL+ ++ R+ ++I D+++IA T DL + Sbjct: 243 FELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLDQM 302 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALAR 530 + RF + L+Y L+ I IPPLR R+ I LR L + + +D A A Sbjct: 303 MADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQAA 362 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGR-IRVSDLPEHLFTEQATDDVSATRLSTSLSF- 588 L + WPGN EL +V+E LS+ NGR I +SDLP +L ++ S+SL Sbjct: 363 LRNHQWPGNVRELSNVLER-TLSALNGRTIGLSDLPFYLHQDRKPLSNGG---SSSLKAV 418 Query: 589 -AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 A +E+E+I +A + TG + + LLGI RT L++K+K++ I + RR Sbjct: 419 QARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEKEPRR 469 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/461 (26%), Positives = 221/461 (47%), Gaps = 26/461 (5%) Query: 193 SLLAETNRHLNQ---LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 SLL NQ L L E++ DG+I D++ + NA R+ + G+ Sbjct: 184 SLLKNMEYEANQMEFLRLLAENVTDGLIFVDDRERIGIANANVGRIFP-NRRPVAGKGFQ 242 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 E + P + + +K +H++ AV +I + I+ +H + ++ Sbjct: 243 E--SFPFMAKNYLKACREKQHLDNEIYRTRDMNIAVDFTPVMIGGEYKGMIITIHDIGRL 300 Query: 310 RQL---MTSQLGKV----SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 +Q + S+L ++ + F+ + P +I + A + VL+ GE G GK Sbjct: 301 QQREAQIRSKLNEMGLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNVLIYGETGTGKE 360 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDN----ENGRLSRLELAHGG 418 L++Q+IHN S+R +GP++A+NC + + L E G + + G+ E AHGG Sbjct: 361 LVAQSIHNASKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVKGGKPGLFEQAHGG 420 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL+++ L V Q LL+V+++ + R+ ++++ IDV++IA T +L + F Sbjct: 421 TLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATNKNLKQMTLDGLFR 480 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWP 537 L Y L + +PPLR RR I L + L +++F T +DA+ L S + Sbjct: 481 EDLLYRLDVLNLPLPPLRKRREDIRLLAEHYLMEYKEQFETCADHFTEDAMTLLSSYPFM 540 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHL----FTEQATDDVSATRLSTSLS----FA 589 GN EL +++E +++++ + ++V D+ E L + Q R+ + Sbjct: 541 GNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTAGQVGRIQDQAAAPAYIR 600 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++KE I + G E++ LG+ RTTLWRKM + G+ Sbjct: 601 NIQKEEIERLLKECGYNKSEVARRLGLNRTTLWRKMGKMGL 641 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 132/468 (28%), Positives = 212/468 (45%), Gaps = 45/468 (9%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 + + S+ D V+ D ++ IN + + +G+ + + A + A+ Sbjct: 122 FDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSVRK-GAQISHAVNT 180 Query: 265 AHPLKHVEATFESQHQFID------------AVITLKPIIETQGTSFILLLHPVEQMRQL 312 +K++ + F+D V+ K I E Q H +++ Q Sbjct: 181 GVAMKNIYRQEGDREYFVDLYPVSVGGKILGGVVLAKDITEIQ--------HLTKKVNQW 232 Query: 313 MT--SQLG-------KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 T S+L K + TF + P + I G++ A S +L+ GE G GK + Sbjct: 233 KTQFSKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDI 292 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGT 419 SQAIHN S R P++A+NC + E G G T ++ G++ ELA+ GT Sbjct: 293 FSQAIHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGT 352 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + ++LQS LL+ ++ G ITR+ I ++V+VIA T DL + +N F Sbjct: 353 LFLDEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRS 412 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LY+ L+ I +PPLR R+ IP LV L L RL I + + L WPGN Sbjct: 413 DLYFRLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLIITPETVTSLKHYHWPGN 472 Query: 540 DFELYSVIENLALSSDNGRIRVSDLP--------EHLFTEQATDDVSATRLSTSLSFAEV 591 EL +V+ A D I + LP +H Q + + S +E+ Sbjct: 473 IRELQNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEPRSFITPLRESQSEL 532 Query: 592 EKEAIINAAQVTGGRIQ---EMSALLGIGRTTLWRKMKQHGIDAGQFK 636 EK+ I G +Q +++ LLGI TL+ K+ Q+GI+ +F+ Sbjct: 533 EKDKISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINKKRFR 580 >UniRef50_Q24RP4 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24RP4_DESHY Length = 588 Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 106/312 (33%), Positives = 163/312 (52%), Gaps = 23/312 (7%) Query: 338 IHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI 397 I R+ AR +L+ GE G GK + +Q+IHNES R GP++A NC + E Sbjct: 277 IDNARKFARIEANILIQGESGTGKEVFAQSIHNES-RPRGPFVAENCAAIPRTLIESELF 335 Query: 398 G---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 G G T E GR+ ++E A+GGTLFL++I + +ELQ+ LL+VI++ + R+ R Sbjct: 336 GYEGGSFTGAERQGRIGKIEQANGGTLFLDEIGDMPLELQAVLLRVIEEKKVKRVGGNRS 395 Query: 454 IPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL 513 IP+D ++I T DL L N+F LYY + F+I IPPLR R G I L + ++ Sbjct: 396 IPVDFRLITATNKDLLKLTRNNQFREDLYYRIATFKICIPPLRERGGDILHLAEHYIKLY 455 Query: 514 EKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ 572 ++ R+ + A L+ WPGN +L + + + NG+IR D P + E Sbjct: 456 AQKQKIRVPSLSKTAKYMLLKYDWPGNVRQLQNAVLYAVTMAKNGQIRPEDFPSEIVLEN 515 Query: 573 A--------------TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGR 618 +D +++ S E+EK AI A Q T I+ S LLG+ + Sbjct: 516 TQANNPKAQPLTLGKVNDCGKDKIT---SINELEKVAIERALQQTNNNIRIASELLGMSK 572 Query: 619 TTLWRKMKQHGI 630 +TL+RK+K++ + Sbjct: 573 STLYRKIKEYDL 584 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 32/148 (21%), Positives = 67/148 (45%), Gaps = 3/148 (2%) Query: 43 FASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSR-NGDPQTLQQLSA-L 100 F+ K+ +L + +E A C + + DE IL GD Q + + L Sbjct: 87 FSKRVSEKEKLLKAAEPYIEQLESIAANTHCFIMLTDEQGVILRVVEGDFQEAKNTNTQL 146 Query: 101 GFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGT 160 G E +GTC+ +L+ + + +H+ + + + + P+F++ G L G Sbjct: 147 QLLPGGVWTEATVGTCSHALSILLQCPTQVCGSEHYCESFSHSSCSSAPIFNANGGLEGV 206 Query: 161 IALACP-VEQTTAADLPLTLAIAREVGN 187 +++A P +++ ++ L L ++ A + N Sbjct: 207 LSIASPYIQRQSSHSLGLVVSTAWAIQN 234 >UniRef50_Q2RHA0 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RHA0_MOOTA Length = 752 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 103/315 (32%), Positives = 173/315 (54%), Gaps = 22/315 (6%) Query: 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390 P+ R+++ + AR VL+ GE GVGK ++++ IH SER GP++ +NC + Sbjct: 444 SPRMLRVLYLAERVARVDSTVLILGESGVGKEVVARLIHALSERGKGPFVKINCGAIPEN 503 Query: 391 ALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 L E G +R N G++ +LEL GGT+FL++I L ++LQ LLQV+++ + Sbjct: 504 LLESELFGYERGAFTGANREGKMGQLELGEGGTVFLDEIAELPLKLQVKLLQVLQEQRLV 563 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ R I +++++I+ T +L +V + F LYY L+ +TIPPLR R I AL+ Sbjct: 564 RVGGIREIKLNIRIISATNKNLLQMVREGTFREDLYYRLNVIPLTIPPLRERPEDIEALI 623 Query: 507 NNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE 566 ++ + L +R+ +I A L++ WPGN EL++VIE L + + I LPE Sbjct: 624 DHFMDRLNRRYKQEKRISRRARRYLLAYPWPGNVRELHNVIEQLFVLVEGTEI----LPE 679 Query: 567 HLFTEQATDDVSATRLSTSL----------SFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 HL DD R S+ + + EVEK+ ++ A + Q ++ LG+ Sbjct: 680 HL-PYYIRDD--PARYSSHMLVKDIIPMKEAIEEVEKQLLLKALEKYRSTYQ-VAEKLGV 735 Query: 617 GRTTLWRKMKQHGID 631 ++T+ RK+K++G++ Sbjct: 736 NQSTVVRKIKKYGLE 750 >UniRef50_A9FB29 Sigma-54 dependent DNA-binding response regulator n=15 Tax=Bacteria RepID=A9FB29_SORC5 Length = 461 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 5/308 (1%) Query: 332 PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAA 391 P R + + A S +L+ GE G GK L+++A+H S R+ G ++AVNC DA Sbjct: 148 PVMRSVFDLLDRIADSDTSILITGESGTGKELVARAVHQRSRRSEGAFVAVNCAAVPDAL 207 Query: 392 LAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRL 448 L E G R TD + R AHGGTLFL++I L + LQ LL+ +++ V+ + Sbjct: 208 LESELFGHARGAFTDAKGARSGLFARAHGGTLFLDEIGELPIGLQPKLLRALQERVVRPV 267 Query: 449 DARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN 508 A +P+DV++IA T DL +E+ RF LYY ++ + +PPLR R + L + Sbjct: 268 GADEELPVDVRLIAATNRDLETAIEERRFREDLYYRINVVHVDLPPLRSRGADVLLLAQH 327 Query: 509 KLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH 567 L + ++ + A +L++ AWPGN EL + IE + I V DLPE Sbjct: 328 FLEHFATVKARPIQGLSAPAAEKLMAYAWPGNVRELQNCIERAVALARYDHITVDDLPEK 387 Query: 568 LFTEQATDDVSATRLSTSL-SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + T + + + ++ T L EVE+ I+ +V GG + + +LG R TL+RK++ Sbjct: 388 IRTYRRSHVLVSSDDPTELVPMEEVERRYILRVLEVVGGNKSQAAQILGFDRATLYRKLE 447 Query: 627 QHGIDAGQ 634 ++G+ G+ Sbjct: 448 RYGMRVGR 455 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 137/469 (29%), Positives = 216/469 (46%), Gaps = 22/469 (4%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I E + D LL E +L +LES+ DG+ D G + ++N R++ Sbjct: 94 IMNEASEIHGVDKLLHENALMQERLQMILESVQDGICVVDRSGEVTYVNPSYLRIVHKTP 153 Query: 241 TASQGRAITELL---TLPAVLQQAIKQAHPLKHVE----ATFESQHQFIDAVI-----TL 288 G+ + E AVL+ I + ++H + F+D I + Sbjct: 154 EMVVGQNVFETAADGNRCAVLRSGIARIGSIRHKKDGTTIVANVNPIFVDGEIAGVVSVI 213 Query: 289 KPIIETQGTSFILLLHPVEQMRQLMTSQL---GKVSHTFAHMPQDDPQTRRLIHFGRQAA 345 K I E Q + + L V + + +L K + FA+ + ++ +AA Sbjct: 214 KDITEIQ--TLMERLSQVSAKAEYLEQELLRTKKTAQAFANYIGKSGKVVDVLALASKAA 271 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---T 402 SS VL+ GE G GK ++++ IH S R GP+I VNC A L E G ++ T Sbjct: 272 DSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNCGAIPGALLESELFGHEKGAFT 331 Query: 403 DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 +L + ELA+ GT+FL++I L LQ LL+V++Q R+ I +DV++IA Sbjct: 332 GAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQKEFDRVGGEETIHVDVRIIA 391 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T DL +V + F LYY L+ I +PPLR R IP LV + + + K ++ Sbjct: 392 ATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDIPLLVEHFIEKISKENKKDVR 451 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 I DA+ + WPGN EL +VIE + D I + LP ++ + A +V + Sbjct: 452 GITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLITAAMLPSYIKGDIAGREVQSLA 511 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 T L + E EK+ I NA + G + LL I T+ K +++G+ Sbjct: 512 DDTVLPWEEYEKQIIANALR-QGTSFNGAAKLLRISHKTVAAKARKYGL 559 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 137/505 (27%), Positives = 234/505 (46%), Gaps = 21/505 (4%) Query: 143 WAFCATPLFDSKGRLTGTIAL-ACPVEQTTA--ADLPLTLAIAREVGNLLLTDSLLAETN 199 +A P+ K ++ G I L A EQ TA + + ++ +L+ + + E+ Sbjct: 88 YAEVCCPI-KVKDQIVGVIGLIAFEEEQKTAMIGNQKNLMEFLNKMADLISSKVIEQEST 146 Query: 200 RHLN----QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 + +L +L+S+D G+I+ D G + N +A + +L R I +LL Sbjct: 147 DQIKFLVKELETVLDSVDRGIIAVDGTGKIIHYNKRAIGLFKLSENEVCDRNIKDLLEEF 206 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMT 314 V K++ +K+ + + V PI I ++ + + + ++ Sbjct: 207 DV-NLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPIRIGSENFGIVFTFSNISDVLGIIN 265 Query: 315 SQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 G + F + + + G +AA+SS VL+ GE G GK L ++AIH S+ Sbjct: 266 DMTTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSSSTVLIQGESGTGKELFARAIHFHSQ 325 Query: 374 RAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLA 429 R P+I +NC + L E G + G+ + ELA+GGT+FL++I + Sbjct: 326 RCKKPFIPINCAAIPEQLLESELFGYEEGAFTGAKRGGKSGKFELANGGTIFLDEIGDMP 385 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + LQ+ LL+V+++ VI ++ + IPID ++IA T DL V + F + L+Y ++ Sbjct: 386 LHLQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDLENRVLEGEFRQDLFYRINVIP 445 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIE 548 + IPPLR R + LV+ L ++ ++ + +S WPGN EL + IE Sbjct: 446 LHIPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVHPGVFDVFMSYQWPGNVRELENTIE 505 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 I DLP+ L Q + R TS+ E+E++ +I A G Q Sbjct: 506 YAVNMCSGSIIMERDLPKRLSRRQTESKDESFRGITSIQ--ELERKEMIKAIAYFGNTKQ 563 Query: 609 EMS---ALLGIGRTTLWRKMKQHGI 630 ++ LGIGR TL+RK+K +GI Sbjct: 564 AITMAATALGIGRATLYRKLKIYGI 588 >UniRef50_B2JQ58 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JQ58_BURP8 Length = 486 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 20/337 (5%) Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 +Q + +TFA + + R+A++ PVLL GE G GK LL+ AIH S R Sbjct: 149 AQARRAKYTFASFVGTSAASLEVKRQARRASQVDSPVLLLGETGTGKELLAHAIHGASSR 208 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAV 430 + P + VN DA L EF G + GR+ + ELA GGTLFL++I + + Sbjct: 209 STKPLVTVNVAAIPDALLEVEFFGAAAGAYTGADRKGRVGKFELADGGTLFLDEIGDMPL 268 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 LQ LL+V++ L + R++ DV++IA T+ADL LV + RF L+Y L+ I Sbjct: 269 PLQGKLLRVLQDREFEPLGSNRIVRADVRIIAATSADLPALVAEGRFRPDLFYRLNVLTI 328 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 PPLR R+ I AL L L + ++ DDAL L S WPGN EL++ +E Sbjct: 329 HAPPLRERQTDIEALAYTILEDLSTQVRGGHFELQDDALRLLCSYGWPGNVRELHNTLER 388 Query: 550 LALSSDNGRIRVSDLPEHL--------FTEQATDDVSATRLSTSL-------SFAEVEKE 594 + SD+ RI L + F A +A S + A EK Sbjct: 389 AVMLSDSERIDARALAPFIGPVRGQAAFVAPAPVQHAAAGASMEREPQQWADAMAAFEKR 448 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + +A + GR+ E +A +G+GR TL++K+ +GID Sbjct: 449 FLDDALRACEGRVTETAARIGMGRATLYKKIAAYGID 485 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 115/357 (32%), Positives = 179/357 (50%), Gaps = 23/357 (6%) Query: 294 TQGTSFILLLHPV---------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 T+ F LLH V E+ ++ QL K + F + D PQ +R+ + Sbjct: 107 TKPVKFDELLHSVSTAIKFKRLERENTILKKQLKK-KYRFENFVGDSPQIQRVFELIEKV 165 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR--- 401 A + VL+ GE G GK L+++AIH S R P + +NC + L E G ++ Sbjct: 166 ADTDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAF 225 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 T R+ R E+A+GGT+FL++I ++ LQ LL+VI++ R+ + R + +D++++ Sbjct: 226 TGAHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRIL 285 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVN---NKLRSLEKRFS 518 A T DL VE+ F LYY L+ I +PPLR R+ IP L++ NKL + ++R Sbjct: 286 AATNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPV 345 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 R I A+ L+ WPGN EL +V+E + + S I DLP + + + + Sbjct: 346 KR--ISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEA 403 Query: 579 ATRL-STSLSF----AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +L S + F E EK I+ A + + + LL I RTTL KMK+ I Sbjct: 404 GLKLPSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_C6NYI4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NYI4_9GAMM Length = 364 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 166/306 (54%), Gaps = 21/306 (6%) Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDN 404 A SS VLL GE G GK ++S+AIH+ S+RA P++A+NC A L E + G Sbjct: 53 APSSATVLLTGETGTGKEVVSRAIHDSSDRAGKPFVAINCAAV-PAELLESVLFGHEKGA 111 Query: 405 ENGRLSR----LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 G +R E A GGTL L++I + + +Q+ LL+V+++ I R+ R +P+DV++ Sbjct: 112 FTGAYARSPGKFEQADGGTLLLDEIGEMPLSMQAKLLRVLQERKIDRVGGRDSVPVDVRI 171 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 IA T DL + + +F LYY L+ + I +P LR R+ IP LV + R L KR Sbjct: 172 IAATHRDLQERILKKQFREDLYYRLNVYPIELPALRDRKEDIPLLVKHFTRELRKRGYPE 231 Query: 521 LKIDDDALARLVSCAWPGNDFELYSVIENL---ALSSDNGRIRVSDLPEHLFTEQATDDV 577 L D+A+A L +CAWPGN EL +++E + AL + + +DLPE L +Q++ V Sbjct: 232 LSFTDEAMAALQACAWPGNVRELVNLVERMAVQALQREKREVAFNDLPETL-KKQSSKTV 290 Query: 578 --------SATRLSTSLSFAE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + RL + ++ +E+E I + GG + + LG+ RTTL +M Sbjct: 291 LPDVLVGGDSARLPQGRTLSQHLENIEREIISTTLRAVGGNLSRAARELGMPRTTLLSRM 350 Query: 626 KQHGID 631 + +D Sbjct: 351 QSLKLD 356 >UniRef50_B0S8N1 Response regulator of a two component response regulator n=6 Tax=Leptospira RepID=B0S8N1_LEPBA Length = 450 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 5/297 (1%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---G 399 QAA ++ V + GE G GK L ++AIH S+R PYI NC + +L +E G Sbjct: 152 QAAETNARVFIYGENGTGKELTARAIHQNSKRKNEPYIEFNCASLPEESLEQELFGLELA 211 Query: 400 DRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 +TD+ R+ + E A GTLFL++I L++ LQS +L+VI + R+ + IP+DV+ Sbjct: 212 SQTDSPEIRIGKWEQAQNGTLFLDEICDLSLALQSKVLKVILDQKLERVGGKEFIPVDVR 271 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL-RSLEKRFS 518 +IA T +++ + + +F L+YAL+ + +PPLR R IP L L +S+ + Sbjct: 272 IIAATNSNVEDAIREGKFREDLFYALNVIPLELPPLRERNQDIPLLAEYYLKKSISENHL 331 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 ++ ID D L L S WPGN EL ++IE L++ I+ D+ E L + +++ Sbjct: 332 SQKTIDRDGLDALSSHFWPGNVRELTNIIERLSILVPGDTIKAKDVKEALHGFKRANEMV 391 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 A R + E E++ II Q+ G + S LGI RT L+RK++ I Q Sbjct: 392 A-RGDLKHAKEEFERQYIIKTLQICEGNVTRTSKALGIERTHLYRKLRSLNISVDQL 447 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 138/480 (28%), Positives = 229/480 (47%), Gaps = 37/480 (7%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 L I +++ L LA+T ++L A++ES DG D +G IN+ R+ Sbjct: 100 LGIFQDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGA 159 Query: 239 DATASQGRAITEL---------LTLPAVLQQA-IKQAHPL---KHVEAT----FESQHQF 281 A GR + EL +TL + Q+ + H L K V T F+S Sbjct: 160 KAEEVVGRHMKELEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNI 219 Query: 282 IDAVITLKPI------IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTR 335 V ++ I + + L H E++ + M +LG+ + + Sbjct: 220 TKVVTNVRDISELLELKDELEKTQALTRHYKEKLTE-MEEKLGE-----GEIVAKSKVKK 273 Query: 336 RLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE 395 RL+ + A VL+ GE GVGK ++++ IH S R+ P+I +NC + L E Sbjct: 274 RLLAQAARVAAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLESE 333 Query: 396 FIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 G G T ++NG+ + E+A+GGTL L++I L+ +LQ LL+ ++ ITR+ Sbjct: 334 LFGHEPGSFTGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIGGV 393 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 + +DVK+IA T DL +V Q F LYY L + IPPLR R IP L+ + +R Sbjct: 394 KPRQLDVKIIACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHYIR 453 Query: 512 SLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE 571 +++ + AL LVS WPGN EL ++IE L + I SDLP+ + Sbjct: 454 KYNEKYGVNKGLSSSALEELVSYNWPGNVRELENMIERLVIMVPENLIETSDLPQQI--- 510 Query: 572 QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + ++ LS + +++EK ++ A +E + +LG+ ++T+ RK+ ++G++ Sbjct: 511 KESNVKILENLSLPDAVSKLEKR-MLQKAMEQSNNTREAAQILGVAQSTVVRKLDKYGLN 569 >UniRef50_Q086E2 Two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q086E2_SHEFN Length = 516 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 158/295 (53%), Gaps = 13/295 (4%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR- 401 Q A VLL GE G GK ++++AIH+ S R P I V+C A + E G +R Sbjct: 225 QVAPMHATVLLLGETGTGKGVVARAIHSRSSRKKRPLITVDCTTLPVALIESELFGRERG 284 Query: 402 --TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T +++ ++ R ELA GGTLFL++I + +E+Q+ LL+VI+ G RL + R I +DV+ Sbjct: 285 AFTGSDSKQIGRFELADGGTLFLDEIGEMPLEMQAKLLRVIQDGEFERLGSPRTIKVDVR 344 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 +IA T +L V +F LYY L+ F IT+PPLR R+ I LVN+ L K+ Sbjct: 345 IIAATNRNLIEEVRNGKFREDLYYRLNVFPITLPPLRQRKEDISLLVNHFLIKFNKKIGK 404 Query: 520 RLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 ++ I DAL L WPGN EL S IE + S+ +++ D E D ++ Sbjct: 405 QIDIITQDALNTLQQHQWPGNVRELESAIERAVILSEGKSLQILDRFESF------DKLA 458 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA---LLGIGRTTLWRKMKQHGI 630 + + E+E E I+ Q TG RI+ +LG+ +TL +M++ GI Sbjct: 459 TIEEPSMKALVELEYEHIVKVLQQTGWRIEGNKGAALILGLNPSTLRARMRKQGI 513 >UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas RepID=Q4UYV5_XANC8 Length = 680 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 164/663 (24%), Positives = 281/663 (42%), Gaps = 73/663 (11%) Query: 10 RGISPLIAT---SWERC--NKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 R I+PL A SW RC + + E P + +R +L + + +E+ Sbjct: 52 RDIAPLAAPLSRSWRRCLEDYALLPEALPDPMVHDALHVRERQQRLGDVLRIARVEMENL 111 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 +E +A A+ D A +L DP L++ +G G AE GT L A Sbjct: 112 YEQIAGSGYAVIFADADATVLHSVHDPTLLREFRQVGLFAGASWAERHQGTNGLGTCAAE 171 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 AV +H+ + C+ P+ D+ G L + + P Q I R Sbjct: 172 RTAVSVHRGEHYLTRHLPLSCCSAPILDAHGGLLAVLDASTPNAQDGKQ-------IQRH 224 Query: 185 VGNLLLTDSLLAETNRHLNQLN-----------ALLESMDDGVISWDEQGNLQFINAQAA 233 L+ + + LNQ + + +I+ G + +N Sbjct: 225 TVALVSMSAAQISRSHFLNQFGHAFILRFHSRPEFAGLLHEALIAIGADGRVLAVNEAVL 284 Query: 234 RVL-RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPI 291 L +LD + GR I++++ L F++ +H+ TL I Sbjct: 285 EQLGKLDRSQLVGRDISQVMQL-------------------DFDTIEHRAGSDAGTLWSI 325 Query: 292 -IETQGTSFILLLHPVEQMRQL----------MTSQLGKVSHTFAHMPQDDPQTRRLIHF 340 G F L+ P L ++L H + DP+ R + Sbjct: 326 RCACHGRRFYALVRPPRARPALPAVGGPAQPATETELNPGEHVGS-----DPRMRHNLAN 380 Query: 341 GRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG-- 398 + A +LL G+ G GK ++A+H S A+G ++A+NC +A + E G Sbjct: 381 ALKLAAHRVSILLRGDTGTGKEEFAKAVHRGSPWASGAFVAINCAAIPEALIESELFGYA 440 Query: 399 -GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPI 456 G TD GR +L A GGTLFL++I + + LQS LL+V+++ +T L + R +P+ Sbjct: 441 RGAFTDAAREGRHGKLLQASGGTLFLDEIGDMPLPLQSRLLRVLEEQCVTPLGSERAVPL 500 Query: 457 DVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKR 516 ++ VI+ + DLA V F LYY L+ + +PPLR R L+ LR E+ Sbjct: 501 ELHVISASHRDLAQRVSAGEFREDLYYRLNGVVLHLPPLR-ERSDKAELIRTLLR--EEN 557 Query: 517 FSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD- 575 ++I ++A+ +L+S AWPGN +L +V+ A+ + IR+ +LP+ + + Sbjct: 558 NERGVRISEEAMHKLLSYAWPGNLRQLRNVLRTAAVLCSDAVIRLPNLPQEIVDAGSAPC 617 Query: 576 -----DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 V+A + ++ + E+ + + + + LGI R TL+RK+++HG+ Sbjct: 618 LVDGRAVAADDMPGRVALDQAERLVLQQQLERHRWNVSRTADALGISRNTLYRKLRKHGL 677 Query: 631 DAG 633 + G Sbjct: 678 ETG 680 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 11/301 (3%) Query: 333 QTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL 392 + RR++ ++ AR+ VLL GE GVGK ++++ IH S R+ P++A+NC + L Sbjct: 129 EMRRILEIVKEIARTDITVLLTGESGVGKEVIARYIHKHSPRSNQPFVAINCAAITETLL 188 Query: 393 AEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G ++ T + + ELA+ GT+ L++I +A LQ+ LL+VI++ I R+ Sbjct: 189 EAELFGHEKGAFTGATERKPGKFELANKGTILLDEISEMAYRLQAKLLRVIQEKEIDRVG 248 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 + IPIDV++IATT DLA V++ F L+Y ++ F I IPPLR R I L Sbjct: 249 GTKPIPIDVRIIATTNKDLAEEVKKGNFREDLFYRINVFPIRIPPLRERSDDIIPLAEFF 308 Query: 510 LRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 L+ L + S I +D L+ +W GN EL + I A+ S +G +R+ + +LF Sbjct: 309 LKRLSNKMSKNFTITEDMKKFLLKKSWQGNVRELENFIYRSAVLSQDGILRLHEDEINLF 368 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+ V A +L + E+E I++A + T G + + +LGI TL K+ ++G Sbjct: 369 EEEKP--VKAGKLK------DAERELIVDALKKTEGNRTKAAKILGISVRTLRNKINEYG 420 Query: 630 I 630 + Sbjct: 421 L 421 >UniRef50_Q39TT6 Transcriptional regulator, Fis family / DNA-binding protein Fis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TT6_GEOMG Length = 473 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 167/320 (52%), Gaps = 16/320 (5%) Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 K+S+ F + +P + + Q A + VL+ GE GVGK L+++AIHN S R P Sbjct: 157 KLSNNFDEIVTGNPIFMKALQLVEQVAPTDASVLILGETGVGKELIARAIHNLSNRRDRP 216 Query: 379 YIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSA 435 I +NC + E G +R T + R +LA GGTLFL+++ L +ELQS Sbjct: 217 LIRLNCAALPATLMENELFGHERGAFTGANCRKPGRFDLADGGTLFLDEVGDLPMELQSK 276 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+V+++G RL I +DV+++A T DL L+ + RF LYY L+ F I PPL Sbjct: 277 LLRVLQEGEFERLGGAETIKVDVRILAATHVDLKALLAEGRFRSDLYYRLNVFPIQCPPL 336 Query: 496 RMRRGSIPALVNNKLR-SLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 R RR IP LV + ++ S EK + I + L WPGN EL +VIE + S Sbjct: 337 RERREDIPLLVRHFVKASCEKNGKSIELIPRHVMESLEGYPWPGNIRELQNVIERAVIIS 396 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI---QEMS 611 ++ + LP+ + A D + L + E+E II A + T R+ + + Sbjct: 397 RGNKLEIDSLPKMVI---AADAAPISPLEVT------EREHIIRALETTAWRVGGPKGAA 447 Query: 612 ALLGIGRTTLWRKMKQHGID 631 +LG+ RTTL +M++ GI+ Sbjct: 448 EILGLKRTTLQARMRKLGIN 467 >UniRef50_B5YK20 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YK20_THEYD Length = 448 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 170/318 (53%), Gaps = 14/318 (4%) Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 H ++ + + +L+ RQ A + VL+ GE G GK L ++ IH S R GP++A Sbjct: 136 HEKVNIITQNSKMLKLLEIARQIAPTDCNVLITGESGTGKELFARYIHLNSLRKKGPFLA 195 Query: 382 VNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 VNC + + L+ E G ++ T + +E+A G+LFL++I +++ +Q+ LL+ Sbjct: 196 VNCGAFSEELLSNELFGHEKGAFTGANALKKGLIEMASSGSLFLDEITEMSLTMQAKLLR 255 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 VI++ RL A I +DV+ IA T D+ V+ +F LYY L+ I IPPLR R Sbjct: 256 VIQEREFFRLGATEPIKVDVRFIAATNRDIKEEVKNGKFREDLYYRLNVVNIEIPPLRER 315 Query: 499 RGSIPALVNNKLRSLEKRFSTRLK-----IDDDALARLVSCAWPGNDFELYSVIENLALS 553 + IP LV K++S +K + ++A+ LV+ +PGN EL ++IE + Sbjct: 316 KDDIPLLV----AYFSKKYSLLMKKEITGVSEEAINLLVNYEYPGNVRELENIIERAVVL 371 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 ++ +I V LP+ L ++ +V + +S E+EKE I + G + + Sbjct: 372 CNSSQIDVEHLPQDL--KELKIEVFTKKEGKFMSLEELEKEYIKWILREVGNNKTVAAQI 429 Query: 614 LGIGRTTLWRKMKQHGID 631 LGI R +LWRK+K +GI+ Sbjct: 430 LGIDRVSLWRKLKNYGIE 447 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 125/444 (28%), Positives = 217/444 (48%), Gaps = 20/444 (4%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR-AITELLTLPAVLQQAIK 263 L A++ S +D + DE G +N ++ LD+ G+ A ++ ++ Q ++ Sbjct: 215 LEAIINSSNDAISVVDENGTGLMVNPAYTKLTGLDSDQIIGQPATADISEGESIHMQVLR 274 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG----- 318 P++ H+ V +++ + I ++H V ++ +L +SQL Sbjct: 275 TKKPVRGARLKL-GPHKKDVIVNVAPVVVDGELKGSIGVIHDVSELNRL-SSQLQHAQKR 332 Query: 319 ----KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + +++F+ + + I ++ A++SFP+LL GE G GK L + AIHNESER Sbjct: 333 LATLEATYSFSEIVGTSKEMAFAIEQAKRGAKTSFPILLLGETGTGKELFAHAIHNESER 392 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGDRTDN----ENGRLSRLELAHGGTLFLEKIEYLAV 430 P++ VNC + L E G ++ ++G+ E A G++FL++I ++ Sbjct: 393 KGQPFVRVNCAALTETLLESELFGYEQGAFSGALKSGKKGLFEEAEHGSIFLDEIGEMSP 452 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 Q+ LL+V+++ I R+ + IPI V+VIA T DL + + RF LYY L+ I Sbjct: 453 NTQAKLLRVLQEQEIVRVGGTKPIPIHVRVIAATNVDLEGAIRERRFREDLYYRLNKLPI 512 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIEN 549 IPPLR R +PAL+++ LR L + ++ I L+R WPGN EL +V+ Sbjct: 513 RIPPLRERLSDLPALIDHLLRKLNLDYGHNIQSISKLVLSRFEGYYWPGNVRELENVLAR 572 Query: 550 LALSSDNGRIRVSD--LPEHLFTEQATDDVSATRLSTSLSF-AEVEKEAIINAAQVTGGR 606 + D G ++D LP+ ++ AT +F AE EKE + G Sbjct: 573 SMIYMDLGATELTDVSLPQEFGQSGKREESDATAPKQLQAFLAEKEKEHLRRTLAEVDGV 632 Query: 607 IQEMSALLGIGRTTLWRKMKQHGI 630 E + LLGI +L+ K++++ + Sbjct: 633 KTEAAKLLGISIRSLYYKLEKYNL 656 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 133/440 (30%), Positives = 210/440 (47%), Gaps = 49/440 (11%) Query: 220 DEQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVL---QQAIKQAHPLKHVEA 273 D +G + F N Q L + + G+ +TE++ L V+ + I +K EA Sbjct: 37 DNEGYVVFFNKQYQEFLNISDEEAIGKHVTEIIENTRLHVVISTEKPEIDYLQNIKGREA 96 Query: 274 TFESQHQFIDAV-------ITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFA 325 + F+D I+ + + E + S L E + ++L ++ FA Sbjct: 97 IVQRIPVFMDGKLLGAIGKISFRDVDEVK--SLAKKLQVAENKAKKFENELRYTATYDFA 154 Query: 326 HM---PQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 + Q +RL H + A ++ VL+ GE GVGK L + AIHN S GP++++ Sbjct: 155 DILGVSQSITAVKRLAH---KVAATNTNVLIQGETGVGKELFAHAIHNNSNSCNGPFVSI 211 Query: 383 NCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 NC L E G D +NG++ + ELA GGT+FL++I + + +QS LL+ Sbjct: 212 NCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDEIGDMPLGMQSKLLR 271 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V++ R+ +DV+VIA T ++ V N F L+Y L+ + IPPLR R Sbjct: 272 VLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYRLNTISLIIPPLRER 331 Query: 499 RGSIPALVNNKLRSL------EKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 I +V+ L++L KRFS++ A+ L WPGN EL +V+E L Sbjct: 332 YEDISLIVDKSLKNLNSSEYGNKRFSSQ------AMQTLTMYDWPGNIRELLNVVERLFF 385 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE-----VEKEAIINAAQVTGGRI 607 D SDL E +QA +++ ++ + E EK+AIINA + G Sbjct: 386 LVD------SDLVEENHVKQALSGINSEERKSNTNALEDQIHLTEKDAIINALESCNGNK 439 Query: 608 QEMSALLGIGRTTLWRKMKQ 627 + + LLGI RTTL++KMK+ Sbjct: 440 AQAAKLLGIHRTTLYQKMKK 459 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 125/446 (28%), Positives = 216/446 (48%), Gaps = 40/446 (8%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +LE G+I+ D+ + FIN QA R+L + I + LT +L ++K H Sbjct: 199 ILECTHSGIIAIDKNHSPLFINNQAKRLL----FNQVDKFIKDYLTSDDILD-SLKNGHS 253 Query: 268 L-------KHVEATFESQHQFID-----AVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 L K + TF+ ID V T++ I Q T +++R+ + S Sbjct: 254 LCNNIISFKGLSLTFDCFPIIIDKLHFGCVATIQDIENIQSTE--------KEIRESLIS 305 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 + TF + ++ ++ A+S +++ GE G GK + +Q+IHN S R Sbjct: 306 KSHCAKSTFNDILGSSDALMHSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIHNYSNRF 365 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVE 431 GP++A+NC + L E G G T N G+ ELAH GT+FL++I ++ + Sbjct: 366 NGPFVAINCAAIPENILESELFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEISKD 425 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q LL+V+++ +TR+ +++PI+V+VI T +L ++ N F L+Y L ++ Sbjct: 426 VQVKLLRVLQEREVTRIGDTKVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVLKLD 485 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLA 551 +PPLR R+ I L S+ ++ + I D AL L +PGN +L +++E L Sbjct: 486 LPPLRERKEDIEQLT----YSIISHYNKPVSISDSALKLLSRYDFPGNIRQLKNIVERLV 541 Query: 552 LSSDNGRIRVSDLPEHLFTE----QATDDVSATRLSTSLS---FAEVEKEAIINAAQVTG 604 + D+ + + + L +E + + + A S LS + EK+ I+ + Sbjct: 542 VMCDDNFVDEHLVSDILISEPHFRKDINLIPAINYSPVLSDNKIVDYEKKLILETLEKNN 601 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G + LGI TTLWRK+K++ + Sbjct: 602 GVKSITANQLGISTTTLWRKLKKYKL 627 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 168 bits (425), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 115/442 (26%), Positives = 220/442 (49%), Gaps = 26/442 (5%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 + +L++ DG I D+ G ++ N++A ++LR A +G++I +L P ++++A+ + Sbjct: 87 IETILDASSDGFIVIDKDGTIKLTNSRAIQILR-QAGNLEGKSIYTILPAPDIIKKALSK 145 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVSH 322 + + +E +++ + + G IL L + +R+++ S Sbjct: 146 GIEISNHTLFYEHGGGTCHCLVSSRTLKNEAGVIQGLILTLRDMHDVREMVYSITQARQI 205 Query: 323 TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 TF + P ++ R A+++ VL+ GE G GK L ++AIH +R P+I + Sbjct: 206 TFNDIVTKSPSMLSVVALARNIAKNNSTVLIRGESGTGKELFARAIHAAGKRHNKPFIPL 265 Query: 383 NCELYGDAALAEEFIGGDRTDNENGRLSR---------LELAHGGTLFLEKIEYLAVELQ 433 NC D + E G E+G + ELAHGGTLFL+++ L+ +Q Sbjct: 266 NCAAIPDTLIESELFG-----YEDGTFTGGKKGGKQGLFELAHGGTLFLDEVAELSAYVQ 320 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 + LL+V+++G++ R+ + I +DV++IA T +L +++ +F L+Y L+ + IP Sbjct: 321 AKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNRNLEAMLKNGQFREDLFYRLNVIPLYIP 380 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 PLR IP L+++ ++ L + + + A+ +++ WPGN EL +V+E A+ Sbjct: 381 PLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSPRAVEKMLRYPWPGNVRELSNVVER-AI 439 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF----AEVEKEAIINAAQVTGGRIQ 608 +GR+ D H+ QA D A ++ ++ E + +I A G ++ Sbjct: 440 YLCDGRVITED---HIVFAQAAVDQPAAAVNDAIPLLREAVEATERKLIAEAIRRYGSLR 496 Query: 609 EMSALLGIGRTTLWRKMKQHGI 630 + + LG+ T L +MK+ I Sbjct: 497 QAAKALGVTHTLLINRMKKLNI 518 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 129/444 (29%), Positives = 216/444 (48%), Gaps = 26/444 (5%) Query: 199 NRHLNQ-LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 NR L Q L LE D ++ D QG + +A VL L+ + G I E LT V Sbjct: 119 NRKLRQELKGFLEFEDKPLLLLDRQGIVTECSAGVQTVLGLNRSRLLGETI-ERLTSEKV 177 Query: 258 LQQAIKQAHP-LKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLMTS 315 P + VE E + + + +KP ++ + SF++ E T+ Sbjct: 178 KIDVTNVFKPSFQTVEMKLEGKRE--KWHVQIKPTYVQGEVVSFMIKFLKKE------TN 229 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR----SSFPVLLCGEEGVGKALLSQAIHNE 371 Q K S + QD + IHF R+ AR +LL GE G GK + +QA+H E Sbjct: 230 QF-KQSKDLLYSFQDIIGSSEAIHFAREMARRIAGQDITILLRGESGTGKEMFAQAVHRE 288 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEY 427 S+RA GP++A+NC D L E G + G+ R ELAHGGT+FL++I Sbjct: 289 SQRAQGPFVAINCAAIPDNLLESELFGYESGAFTGAQRQGKAGRFELAHGGTIFLDEIGD 348 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 +++ LQ+ LL+V+++ + R+ + + +DV++IA T +L +V++ F LYY L+ Sbjct: 349 MSLHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQKKTFREDLYYRLNV 408 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSV 546 ITIPP+R R+ +P L+ ++ L + + K DA + WPGN E+ ++ Sbjct: 409 IPITIPPVRERKEDLPILIEYFMKRLSNKEKKQPKYFSKDAYDLIFRYPWPGNVREIVNM 468 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 +E++ I LP +L ++ S +++ + E K+ +++ V G Sbjct: 469 VEHVIYLETGDLITADSLPAYLKIKEG-KSTSQLQINVAPHGEESFKQQVLHLLDVYGRH 527 Query: 607 IQ---EMSALLGIGRTTLWRKMKQ 627 + ++ +GI TL+R++K+ Sbjct: 528 TEGKKRIAKEMGISLPTLYRRLKK 551 >UniRef50_Q24RU7 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=Q24RU7_DESHY Length = 630 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 133/457 (29%), Positives = 224/457 (49%), Gaps = 48/457 (10%) Query: 200 RHLNQL-NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 R N+L +LE+ D V+++D QG + N +L L A E+LT L Sbjct: 193 RRKNELFRIILENTDGAVLAYDNQGLVMAYNQGIYDILDLPAN--------EILT-GKEL 243 Query: 259 QQAIKQAHPLKHVEATFESQHQFI-----DAVITLKPII-ETQGTSFILLLHPVEQM--- 309 + Q + E +F S ++ I VI + II E +L+L V+ + Sbjct: 244 SVFLPQFKEAQLTEESF-SANEIITINNRKVVINKRSIIIEHNNLGTVLMLQNVDALQKT 302 Query: 310 ----RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 RQ + + +TF + +++I ++ A ++ VL+ GE G GK L + Sbjct: 303 EIDVRQKLNKKGLAAKYTFDAIIGQSEVVQKIIRVAQKYAVANSNVLIIGETGTGKKLFA 362 Query: 366 QAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELA 415 Q+IHN S R P++A+NC EL+G A A F G + G++ ELA Sbjct: 363 QSIHNHSMRQNQPFVAINCAALPEQLLESELFGYVAGA--FTGAAK----GGKVGLFELA 416 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 H GTLFL++I + + LQ+ LL+V+++ I +L ++IPIDV++IA T DL + V++ Sbjct: 417 HKGTLFLDEIAEMPMGLQAKLLRVLQEREIRKLGDDKIIPIDVRIIAATNEDLRLKVQEG 476 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA 535 +F + L Y + ++IPPLR RR I A+ L + +++ + L L+ Sbjct: 477 KFRQDLLYRIDVLSLSIPPLRERREDIKAIAKTFLAEFSQNRQQSIRLSQEGLMELMRYD 536 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 WPGN E+ +V E L++ S+N V ++ E L ++ T+ + + + E+ Sbjct: 537 WPGNIREMRNVCERLSVLSENKTSGVHEVKEVLNIKKEPPLNLITQTAAMQNSSHQERPN 596 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + Q+M+ +LGI RTTLWR+ ++ + A Sbjct: 597 KMTQ--------QQMAEMLGISRTTLWRRKQRQEMKA 625 >UniRef50_A6SWE4 Sigma-54-dependent transcriptional activator n=4 Tax=Proteobacteria RepID=A6SWE4_JANMA Length = 550 Score = 167 bits (424), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 127/441 (28%), Positives = 216/441 (48%), Gaps = 37/441 (8%) Query: 214 DGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL----LTLPAVLQQAIKQAHPLK 269 DG+ D G +N R + A+ GR ++E L P + + I+ + Sbjct: 117 DGIFIADGTGTTLMVNEGCERNYGVPASEMIGRHVSEFQRSGLINPVIAMRVIESRQRIS 176 Query: 270 HVEATFESQHQFIDAVITL-------KPIIETQGTSFIL-----LLHPVEQMR--QLMTS 315 V+ T + + + L K II ++ T+ ++ L E++ ++ S Sbjct: 177 AVQETSIGKTIMVTGIPLLDDQGAVRKVIINSRDTTELIQLQEELARAQEKLHRFEMEVS 236 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 QL + A + P +++ ++ A+ S VL+ GE GVGK +L++ IH ES Sbjct: 237 QLRMDNPAIAGLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHH 296 Query: 376 AGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKI 425 AGP++ +NC EL+G A A F G R G++ +E+A GTLFL++I Sbjct: 297 AGPFVKINCGAIPRDLLESELFGYEAGA--FTGAQR----QGKVGMIEVADKGTLFLDEI 350 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L ++LQ LLQV++ +TRL R I +DV+V+A T DL +V+ +F L+Y L Sbjct: 351 GELPLDLQVKLLQVLQDRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRL 410 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + + +PPLR RR I L+ + L L ++ ++ + ALA L+ WPGN EL + Sbjct: 411 NVVPLHVPPLRERREDILPLIQHYLDELNAQYDLDKRLSEQALAALLDYDWPGNVRELRN 470 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 ++E L +++ IR LP L + + D++ RL A E++ I+ A G Sbjct: 471 MVERLVVTAPESLIRSDSLPTLLRSSELESDLA--RLDIKARSAHFERK-IVKEAVERYG 527 Query: 606 RIQEMSALLGIGRTTLWRKMK 626 + + L + ++T+ R++K Sbjct: 528 NTRAAAKHLQVSQSTVVRRLK 548 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 112/358 (31%), Positives = 181/358 (50%), Gaps = 14/358 (3%) Query: 287 TLKP-IIETQGTSFILLLHPVEQMRQL-------MTSQLGKVSHTFAHMPQDDPQTRRLI 338 T+ P II ++ T ++ V Q++Q+ MT + + F + + P+ +I Sbjct: 279 TIHPVIINSRITGIVVTFQDVTQIQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVI 338 Query: 339 HFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG 398 ++ A S +L+ GE G GK L +Q+IHN S R GP++AVNC + L E G Sbjct: 339 EKAKKFASVSSNILIEGETGTGKELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFG 398 Query: 399 ---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 G T + G+ ELAH GTLFL++I + + +Q LL+V+++ + R+ R+I Sbjct: 399 YVEGAFTGTAKGGKTGLFELAHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVI 458 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 +DV++IA T L+ + EQ RF + L Y L+ ++ +PPLR R G L + L Sbjct: 459 SVDVRIIAATNHSLSRITEQGRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYY 518 Query: 515 KRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENL-ALSSDNGRIRVSDLPEHLFTEQ 572 ++ + + A+ L +PGN EL +V E L + D I D+ E L E+ Sbjct: 519 RQLGRIIPHVATAAIQMLSDYHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPEE 578 Query: 573 ATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +T + + + E+E +I + + + LGI RTTLWR+MK+HGI Sbjct: 579 LPVKFQSTDMPIPPFYQDGEREFLIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_D0ZE77 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZE77_EDWTE Length = 463 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 105/292 (35%), Positives = 154/292 (52%), Gaps = 13/292 (4%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---G 399 + A S ++L GE G GK L ++AIH S RAA P+IA+NC ++ E G G Sbjct: 181 RVAGGSSSIMLSGESGTGKELFARAIHRHSPRAARPFIAINCSAIPSGLISSELFGYREG 240 Query: 400 DRTDNENGRLS-RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T G S + E AHGGTL L++I L ++ Q+ LL+V+++ + RL R IPIDV Sbjct: 241 AFTGARRGGASGQFEAAHGGTLLLDEIGELPLDAQAILLRVLEERTVVRLGDTRGIPIDV 300 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++I T DL +V + F + LYY L+ I +PPLR R IP L + L SL Sbjct: 301 RIITATNRDLRQMVRERTFRQDLYYRLNVIPIVLPPLRQRPQDIPLLAHFFLASLGGSRV 360 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 T I+ +A+ARL + WPGN +L +VIE +D +R DLP L D Sbjct: 361 T--AIEAEAMARLCAYRWPGNIRQLRNVIERGINFTDGATLRCGDLPPEL-------DQP 411 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ S+A E+ I Q ++ LGI R+TL++K++ +G+ Sbjct: 412 EEESTSPDSYAAWERRQIWTLMQRYRANKTRIAQALGISRSTLYKKIRHYGL 463 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/419 (29%), Positives = 195/419 (46%), Gaps = 25/419 (5%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +A+ ++ L L E +L +LES+ DG+ D +G + ++N AR++ Sbjct: 233 VAVFEDISALEKVTHELHEVKELKERLQLVLESVQDGICVVDREGCVTYVNPAYARIVNG 292 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII---ETQ 295 GR + L + +QA++ P V + + + PII E Sbjct: 293 RREDLIGRDVRNL-SPRGARRQALETGKP---VLGHLAQKDGDVTVIADAYPIIVDGEVT 348 Query: 296 GT-SFILLLHPVEQMRQLMTSQLGKVSH-------------TFAHMPQDDPQTRRLIHFG 341 G S + L V+ + + + + + FA + R + Sbjct: 349 GVVSIVKTLTDVQTLAEKLNRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVRDALAMA 408 Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR 401 +AA VL+ GE G GK L+++ IH R+ GP+I VNC + L E G ++ Sbjct: 409 EKAAEGPATVLIRGESGTGKELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHEK 468 Query: 402 ---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T +L + ELAH GTLFL++I L +Q+ LL+V+++ I+R+ +DV Sbjct: 469 GAFTGAIKRKLGKFELAHKGTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDV 528 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 K+IA T DL LV + RF LYY L+ I +PPLR R+ IP LV + L+ + Sbjct: 529 KIIAATNQDLERLVAEGRFREDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQG 588 Query: 519 TRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 L+ I DAL L+ +WPGN EL ++IE + SD I SDLP +L A ++ Sbjct: 589 KALRGIHSDALEALMHYSWPGNVRELANLIERVVTLSDGPWITDSDLPTYLRERAAEEN 647 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 166 bits (421), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 141/484 (29%), Positives = 218/484 (45%), Gaps = 63/484 (13%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV-LQQAIK 263 L L+++M + V D + +Q N A + +D G ++ E ++ L A++ Sbjct: 74 LRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQVVGTSLDEHFASESIRLLDALR 133 Query: 264 QAHPLKHV-EATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH 322 Q ++ V H I+A I +G I+ +EQ + +++H Sbjct: 134 QGTSVQRVYHIPRPDSHVLINAAP-----IRREGE--IIGAISIEQDITELVRLNEELAH 186 Query: 323 TFAHMPQ-----------DDP---------QTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 T AH+ DDP + I ++ A++ VL+ GE GVGK Sbjct: 187 TTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVAQTDATVLIYGESGVGKE 246 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEE---FIGGDRTDNEN-GRLSRLELAHGG 418 L +QAIH S R P+IA+NC A E + GG T E G+ +LELAHGG Sbjct: 247 LFAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFTGAEKKGKPGKLELAHGG 306 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I L +ELQ LL+ +++ R+ I ++ +++A T L +V RF Sbjct: 307 TLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIVAATNRQLEQMVADGRFR 366 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWP 537 LYY L+ F + IPPLR RR +P LV + + +I + + L WP Sbjct: 367 EDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSVPRISPEVMQALFEYTWP 426 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHL----------------------FTEQATD 575 GN +L +VIE L++ +NG I LPEHL + T Sbjct: 427 GNIRQLRNVIERLSILQENGVI----LPEHLPSVIRSHTEPTHVSLHTPMGGTYAPPTTT 482 Query: 576 DVSATRLSTSLSFAEV---EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 R S ++++ EKE I+ A + T G + + LLG+ R TL+ KMK+ I+ Sbjct: 483 PPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRGTLYNKMKKFNINE 542 Query: 633 GQFK 636 FK Sbjct: 543 ESFK 546 >UniRef50_Q6MIT5 Transcriptional regulator n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIT5_BDEBA Length = 352 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 97/291 (33%), Positives = 163/291 (56%), Gaps = 6/291 (2%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---G 399 + A S +L+ GE G GK L+++AIH+ S R P++A+NC + L E G G Sbjct: 51 RVAPSQANILVLGESGTGKELIARAIHDRSGRKNKPFVAINCGALRETLLESELFGHEKG 110 Query: 400 DRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T N ++ E A+GGTLFL++I L +Q+ LL+ I++G + R+ + I +D++ Sbjct: 111 SFTGAYNRKIGLAEAANGGTLFLDEIGELDPAIQAKLLRFIQEGEVYRVGGKDPIKVDIR 170 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 +I T +L V + F L+Y ++ ++ PPLR R+ IPALVN+ L + + + Sbjct: 171 LICATNRELDQEVTRGNFREDLFYRINTIVVSAPPLRRRKEDIPALVNHFLNNSQHAYLN 230 Query: 520 RLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 R + ++++A+ L+ WPGN EL +V E L + SD I ++D+PE++ +A DV Sbjct: 231 RGRSVNEEAMKALIRYEWPGNIRELQNVCERLQILSDGHMIMLNDIPENIRNGEAEKDVI 290 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 A +++ E+EK I+ A GG + + LGI TL+ K+ ++G Sbjct: 291 A--YDPAMTLHELEKRYILKALAHFGGNKTQAANNLGITIKTLYNKLHEYG 339 >UniRef50_A0R926 Sensory box sigma-54 dependent DNA-binding response regulator n=79 Tax=Bacillus RepID=A0R926_BACAH Length = 464 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 123/463 (26%), Positives = 225/463 (48%), Gaps = 46/463 (9%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL-- 251 ++AE R L L + E D + D++G + +N+ R ++ A G+ + EL Sbjct: 10 MVAEKERVLMDLQDVFEYAFDEIFVTDDKGIVVRVNSTCERHYQIAAKELVGKHVKELQK 69 Query: 252 --LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG------------T 297 + P+ + I++ P++ V+ T ++ + +P+ + +G T Sbjct: 70 DGIFYPSATLEVIEKKRPIELVQTTKSGEYLHVRT----RPVFDDEGNLRRVISYSRDLT 125 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAH--MPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 L VE+M + + ++ T+ H + +++I ++ + VL+ G Sbjct: 126 ELYQLRQKVEEMDNQLKTYKKELRETYEHEGLIFKSIAMQKIIETIKKVSVVDSTVLVLG 185 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTD-N 404 E GVGK+ L + +H S R + +NC EL+G + GG T N Sbjct: 186 ETGVGKSRLVRHLHEMSNRKNESFYEINCAALPTNLIESELFG-------YSGGSFTGAN 238 Query: 405 ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 G+ LE AH GTLFL++I + +E+Q+ LLQV+++ + R L +DV+++A T Sbjct: 239 REGKKGLLESAHKGTLFLDEIGEMPLEIQAKLLQVLQEKTFRPIGGRELKKVDVRIVAAT 298 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID 524 DL+M+V+Q F + LYY L+ I IPPLR R I L+ + L+ +++ +K+ Sbjct: 299 NRDLSMMVKQGTFRKDLYYRLNVIPILIPPLRERTEDILPLIYHYLQHFNEKYGRNVKLA 358 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 L V W GN+ E+ +VIE + +++D+ + + DLP + +++T + S L Sbjct: 359 PSTLQMFVGYPWEGNNREIENVIERIVITADDI-VTIEDLP--IAMQESTVEQSGQSLYK 415 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 L EVE+ I+ A + G + ++ L I ++ RK+K+ Sbjct: 416 MLE--EVERNIILKAYKTYGSSYK-VAEFLKISQSAATRKIKK 455 >UniRef50_C0ZAD0 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAD0_BREBN Length = 691 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 31/400 (7%) Query: 168 EQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQF 227 ++ TA + + I +E+ N + LL++ L A++ ++D VI+ DE+ N++F Sbjct: 182 QKVTARAMQSLVDITKELNNEIQHAHLLSKY------LEAIVNGIEDAVIAMDEKENIRF 235 Query: 228 INAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVIT 287 +N +A L+++ G + LPA Q I+Q K V + ++ F Sbjct: 236 VNQKAIDTLQMEGNEVVGEKASN--CLPASFYQLIRQCEENKDVLVDWANKTYFFR---K 290 Query: 288 LKPIIETQGTSFILLLHPVEQMRQL-------MTSQLGKVSHTFAHMPQDDPQTRRLIHF 340 + ++E +LL ++ +L + S+ + F + +++I Sbjct: 291 MHIVMEGSFLGSLLLFRQAAEIEKLEHDYRMRLYSKGLIAKYQFDDFYGESAPVQKVIQI 350 Query: 341 GRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD 400 R+ ARS+ VLL GE G GK LL+QAIHN S R P++ VN ++ L E G + Sbjct: 351 ARKIARSNSTVLLLGETGTGKELLAQAIHNASPRRREPFVGVNFAAISESLLESELFGYE 410 Query: 401 RTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPI 456 + G + ELAH GT+FL++I + +Q+ LL+V+++ I R+ ++IP Sbjct: 411 EGAFTGARKGGHIGWFELAHKGTIFLDEIGDASTAIQNRLLRVLQERQIMRVGGSKIIPT 470 Query: 457 DVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKR 516 D++VIA T DL ++ + F LYY L+ I +PPLR RR IP L + K+ Sbjct: 471 DIRVIAATNQDLQRMIAEGAFRADLYYRLNILPIHLPPLRNRREDIPWLAQQFI----KK 526 Query: 517 FSTRLK-----IDDDALARLVSCAWPGNDFELYSVIENLA 551 +S L+ + ++A+ L WPGN EL +VIE LA Sbjct: 527 YSYDLRRPPFTLTNEAMRALHEYDWPGNIRELENVIEYLA 566 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 160/300 (53%), Gaps = 14/300 (4%) Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 ++ + A ++ VLL GE G GK +L++ IHN+S R P++ +NC D L E Sbjct: 239 VLDIAKTVADTTANVLLEGESGTGKNVLAKYIHNQSSRRDKPFVKINCAAIPDNLLESEL 298 Query: 397 IG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 G G T + ++ELA GGTLFL++I L LQS LL +I++ RL + Sbjct: 299 FGYVKGAFTGAVKDKPGKVELADGGTLFLDEIGELPTYLQSKLLHLIQEKEFERLGDTKT 358 Query: 454 IPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL 513 +DV++IA T DL+ LV++ +F LYY L I +P LR R+ IP L+N + Sbjct: 359 KKVDVRIIAATNKDLSQLVKEGKFREDLYYRLKVISIKVPALRERKEDIPFLINYFIDLY 418 Query: 514 EKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ 572 K+++ +K I +A+ L++ +PGN EL ++IE + + I VSDLP+ + Sbjct: 419 SKQYNKHIKGISPEAVRLLLNYDYPGNIRELENIIERAVILAKGKFIEVSDLPDEI---- 474 Query: 573 ATDDVSATRLSTSLSFAEV--EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 V T++ T E EK+ I+ + + + +L I R TLWRK+K++G+ Sbjct: 475 ----VYNTKILTQNDLDEEIDEKQKILRVLESVNWNKSKAAKILNIDRVTLWRKLKKYGL 530 >UniRef50_Q2LQP1 Transcrption factor sigma 54 type n=4 Tax=Deltaproteobacteria RepID=Q2LQP1_SYNAS Length = 555 Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/334 (31%), Positives = 172/334 (51%), Gaps = 14/334 (4%) Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 VE+ L+ ++ + +F ++ +P +R+I R+ A SS VL+ GE G GK L + Sbjct: 222 VERYETLL-DEMRRHRFSFENILTQNPDMQRIIEQARRIAASSATVLILGESGTGKELFA 280 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLF 421 QA+H S R GP++A+NC + E G + ++ G+ + ELA GTLF Sbjct: 281 QALHEASHRRKGPFVAINCGAIPHTLIESELFGYEEGAFSGASKKGKPGKFELACDGTLF 340 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L ++ Q+ LL+V+++ I RL I +D +++ T DL L +F L Sbjct: 341 LDEIGELPIDSQAKLLRVLEERKIDRLGGTAPIAVDFRLVVATNRDLTALANSGKFRSDL 400 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKL-RSLEKRFSTRLKIDDDALARLVSCAWPGND 540 +Y ++ F I IPPLR R IP L + L ++ ++ K ++A+ L+S WPGN Sbjct: 401 FYRINEFPIEIPPLRQRLDDIPLLAEHFLTKACQQEGLAMPKFSEEAIKVLMSYEWPGNV 460 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS--FAEVEKEAIIN 598 EL S+I +A + + +LP+ E+ +S +L A E+ AI Sbjct: 461 RELRSLIRQMAWKFQGMTVELHNLPQAFHKERKVT------MSGTLEEQLARAERNAIET 514 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 A Q + G + +LGI RT L++KM + G+D Sbjct: 515 ALQTSNGNRALAARMLGIHRTALYKKMNRLGVDG 548 >UniRef50_Q89W03 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89W03_BRAJA Length = 480 Score = 166 bits (419), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 219/467 (46%), Gaps = 40/467 (8%) Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD-ATASQGRAITELLTLPAVL 258 R + L LE + +G I+ D G + ++N + + L + + GR I E++ +++ Sbjct: 17 RAMETLFERLEHLCEGAIAIDRSGRVVYVNEKYVTAMGLSHESEALGRPIEEVIP-NSLM 75 Query: 259 QQAIKQAHP--LKHVEATFESQHQFIDAVITLKPIIETQGT-----SFIL---------L 302 ++ ++ P L +E E V+T PI + +G F+L L Sbjct: 76 RRVVETGEPIILDIMELGGEQ------LVVTRMPIEDEKGNIIGAIGFVLYDRLEGLKPL 129 Query: 303 LHPVEQMRQLMTSQLGKVSH------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 L V Q+ + ++SH TF + +AAR S VLL GE Sbjct: 130 LGRVAQLENDLRLARRQLSHARAARFTFDDYVGATAGIAQAKELAARAARQSVTVLLTGE 189 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRL 412 G GK +L+QAIHN S RA P+++VN D + EF G G T + GR + Sbjct: 190 TGTGKEMLAQAIHNASARAEKPFVSVNVAAIPDTLIESEFFGAAPGAYTGADRKGRDGKF 249 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 +A GGTLFL++I + ++LQ+ LL+V+++ I L + ++ +DV+VIA T DL V Sbjct: 250 RIADGGTLFLDEIGEMPLQLQAKLLRVLQEREIEPLGSDKVTRVDVRVIAATNVDLHKRV 309 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARL 531 + F LYY L+ I +PPLR +P + L + +I LA L Sbjct: 310 SEGTFRADLYYRLNVLSIELPPLRHCLDDLPEICGRLLEDISASGDYLNARITPSGLAAL 369 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-----LSTSL 586 WPGN EL +++E + SD+GR+ D L T + +R L + Sbjct: 370 ARYGWPGNVRELRNILERALILSDSGRLTSDDFDRILPVGAETVPTAPSRPAGLVLPYAE 429 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + AE EK + A + G+I E + +L I R T ++K+ + G+ +G Sbjct: 430 AEAEFEKHTLEQALAASNGQISEAAKMLQISRATFYKKLAKFGLASG 476 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 214/449 (47%), Gaps = 26/449 (5%) Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 L ++ LL + D V+ D +G + N+ A ++ G+ +TE + A L Q Sbjct: 17 LREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHVTEFVQ-SASLLQY 75 Query: 262 IKQAHPLKHVEATFES-QHQFIDAVITLKPII---ETQGTSFILLLHPVEQMRQLMTSQL 317 IKQ P ++ S + ++ L P++ + +G + + L P+ Q +S+ Sbjct: 76 IKQGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEG-AILFLTKPILLQEQEQSSRY 134 Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 G + + P L + A+S VL+ GE G GK +L+Q+IH S R G Sbjct: 135 G-TRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSIHRLSHRNKG 193 Query: 378 PYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQ 433 P++A+NC +A L E G + + G+ R ELA GGTLFL++I + + LQ Sbjct: 194 PFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDEIGDMPLYLQ 253 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 + LL+V+++ I R+ + I +DV++IA T DL ++ N+F LY+ L+ + +P Sbjct: 254 AKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFRLNVIPLYVP 313 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLAL 552 PLR R+ + L+ + KR K AL ++ WPGN EL +++E + Sbjct: 314 PLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIRELENMVEYIVN 373 Query: 553 SSDNGRIRVSDLP----------EHLFTEQATDDVSATRLSTSL-SFAEVEKEAIINAAQ 601 + +S LP H E+ + + + L SL EVE++ II A Q Sbjct: 374 LEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVEEQLIIQALQ 433 Query: 602 VTGGRIQ---EMSALLGIGRTTLWRKMKQ 627 G + + + LGI TL+RK+++ Sbjct: 434 RFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 218/450 (48%), Gaps = 28/450 (6%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA 256 ET R + ++ A+++S+ DG+ + DE ++ N A + + A + GR E+ Sbjct: 117 ETLRSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQEAIGRPCYEIFK--- 173 Query: 257 VLQQAIKQAHPLKHVEATFESQHQFIDAV--ITLKPIIETQGTSFI----LLLHPVEQMR 310 +A A P+ AT +S + ++ K +I ++ ++ VE +R Sbjct: 174 --SEACTGACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAGNVMGGVETVR 231 Query: 311 QLM----TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 L + + ++F + +P RRL A S+ V L GE G GK L ++ Sbjct: 232 DLTPITAIKEEIREKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNGESGTGKELFAR 291 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLE 423 AIH+ S R GP + VNC + L E G G T R RLEL +GGT FL+ Sbjct: 292 AIHDLSPRREGPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRLELCNGGTFFLD 351 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I L + LQ LL+V++ L AR I DV+ I T +L +V + F + LY+ Sbjct: 352 EIGDLPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMVAEGTFRQDLYF 411 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFE 542 ++ + IPPLR RR IP LV+ L+ ++ +++ + + L L++ ++PGN E Sbjct: 412 RINIVTLNIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLLLTHSFPGNVRE 471 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA--A 600 L ++IE + I + LP + F Q+ + TR S + A A +NA + Sbjct: 472 LLNLIEQSVILCRGTEITLDHLPTN-FLGQSHEQAQNTRRSGKIPTA-----ADLNALLS 525 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +G R E++ L I RTTLWR MK+ G+ Sbjct: 526 RYSGNR-AEVARELNIDRTTLWRWMKRLGV 554 >UniRef50_Q1D6H5 Sigma-54 dependent DNA-binding response regulator n=7 Tax=Myxococcales RepID=Q1D6H5_MYXXD Length = 474 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/308 (33%), Positives = 159/308 (51%), Gaps = 20/308 (6%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR- 401 + A + VL+ GE G GK L++ A+H S R P+I +NC L E G +R Sbjct: 153 KVADTPSTVLITGESGTGKELIATALHGASSRRDKPFIKINCAAIPHTLLESELFGYERG 212 Query: 402 --TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T + R ELA GTLFL++I + VE+Q LL+ I++G R+ + +DV+ Sbjct: 213 AFTGAVTSKPGRFELADEGTLFLDEIGEIPVEMQVKLLRAIQEGEFERVGGIKTTRVDVR 272 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 ++A T DL +E RF + LYY L I++P LR RR +P L + + +R + Sbjct: 273 LVAATNRDLQAEIEAGRFRKDLYYRLAVVPISLPALRERRSDVPMLARHFVEKYNRRLNK 332 Query: 520 RLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE------------ 566 +++ I DDA+A L AWPGN EL ++IE + L +D I DLPE Sbjct: 333 KIEGIADDAMALLQGYAWPGNIRELENLIERVLLFADGPLITARDLPEPVRQGTGVQAGA 392 Query: 567 HLFTEQATDDVSATRLS----TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 +L + A+ DV + + AE+E++ I+ + TGG + + LL I R +L Sbjct: 393 NLASAVASIDVPTGEVGLKDIVRMKAAELERDLIVKKLEETGGNVTRAARLLQISRKSLQ 452 Query: 623 RKMKQHGI 630 KMK+ G+ Sbjct: 453 TKMKEFGL 460 >UniRef50_B5YHF3 Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHF3_THEYD Length = 455 Score = 165 bits (418), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 97/294 (32%), Positives = 153/294 (52%), Gaps = 7/294 (2%) Query: 344 AARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR-- 401 A++ PVL+ GE G GK L++ AI +S R PYI +NC + E G ++ Sbjct: 160 VAKTDVPVLIQGESGTGKELIANAIQKQSLRKEKPYIKINCAAIPETLFESELFGYEKGA 219 Query: 402 -TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T + + ELA+GGT+F ++I + + LQ+ LL+VI+ G++ RL + I I+V+ Sbjct: 220 FTGATETKKGKFELANGGTIFFDEIGDMPLSLQAKLLRVIEDGIVYRLGGKEPIKINVRC 279 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 I T+ +L L++ +F L+Y ++ I IPPL+ R+ IP L+ L+ +++ + Sbjct: 280 IYATSKNLKELIKAEKFREDLFYRINVMPIAIPPLKERKEDIPVLIEKFLKIFSEKYGKQ 339 Query: 521 -LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT--DDV 577 + I A L+S +PGN EL IE L S +G I + LPE F+ ++ Sbjct: 340 NITISPSAYEALLSYDYPGNVRELKHAIERALLLSKDGVIDIKHLPEE-FSPLSSFQKKC 398 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + S EK II A Q G + E + LGI R LW K+K +GI+ Sbjct: 399 FISNFSLKECIENFEKNLIIKALQECGWKKTEAAKKLGISRKALWEKIKFYGIE 452 >UniRef50_Q181W8 Putative sigma-54 interacting regulatory protein n=6 Tax=Clostridium difficile RepID=Q181W8_CLOD6 Length = 666 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 130/475 (27%), Positives = 225/475 (47%), Gaps = 63/475 (13%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L +L+ + DGVI+ D G++ N A +L+++ + + I ++ P ++ + Sbjct: 203 LRNILDGIKDGVIAIDSNGSIILYNESAKNMLKVERKCALNKYILDVF--PK-MEWMLDC 259 Query: 265 AHPLKHVEATFESQHQFIDAVI--TLKPIIETQGTSFILL--------LHPVEQMRQLMT 314 H + VE + + + I+ +I T +I+ +++ +L L +E+ + Sbjct: 260 LHEKEDVE---DRKIRNINNLIVNTRTTLIKVDNSTYGVLGIIQDITKLQNLERKIRFDL 316 Query: 315 SQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 +Q G + +TF D T+ I ++ +S + LL GE G GK +++ +IHN S+ Sbjct: 317 NQKGLYARYTFDDFLFKDKLTKEFIEEAKKIGKSDYTTLLYGESGSGKEIIAHSIHNISK 376 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG-------GDRTDNENGRLSRLELAHGGTLFLEKIE 426 R P++A+NC + L E G G R + G+ ELAHGGTLFL++I Sbjct: 377 RKDRPFVAINCATIAENLLESELFGYEEGAFTGAR---KGGKRGLFELAHGGTLFLDEIN 433 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L+ +Q+ LL+VI++ I R+ + +IP+D+++IA T L + F L+Y L Sbjct: 434 SLSFNIQTKLLRVIEERQIMRIGSDYIIPLDIRIIAATNESLTEKIVMGTFRADLFYRLS 493 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEK--------RFSTRLKIDDDALARLVSCAWPG 538 + EI IPPLR RR I L NN + + K + D + +L + +WPG Sbjct: 494 SLEINIPPLRDRREDIIPLFNNFVNEVLKDDGLNGINSIDENFVLTKDEMDKLYNYSWPG 553 Query: 539 NDFELYSVIENLALSSDNGRIRVSD---------LPE---HLFTEQATDDVSATRLSTSL 586 N EL ++ + ++ G+I++ LP F + T V S ++ Sbjct: 554 NVRELKTIAQKYVVT---GKIKLRQDRDFKTKKLLPNSEVDKFNSETTASVEVQDESINI 610 Query: 587 S----------FAEVEK---EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 S EV K E II+ G E++ +LGI RT+LW+K ++ Sbjct: 611 SKINDGKISIDIKEVNKYVEEKIISMLFAQGLSKNEVAQVLGISRTSLWKKYNKN 665 >UniRef50_C8X5C3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5C3_DESRD Length = 521 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 168/318 (52%), Gaps = 19/318 (5%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 R ++ +Q A+ PVLL GE G GK +++ IH S RA GP I VNC + L Sbjct: 206 RGVMEQAQQVAQLDNPVLLLGETGCGKGMIADTIHKLSRRAQGPMITVNCGAIPASLLES 265 Query: 395 EFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G ++ T E + R E A GGT+FL++I L +E Q LL V++ I R+ Sbjct: 266 ELFGHEKGAFTGAERQKRGRFERAQGGTVFLDEIGELPLESQVKLLHVLQHKEIERVGGS 325 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL- 510 + I +D+++IA T DLA +V +F L+Y L+ F + +PPLR R+ IPALV L Sbjct: 326 QTIALDIRIIAATNRDLAGMVSSGQFREDLWYRLNVFPVMVPPLRQRKEDIPALVRYFLQ 385 Query: 511 -RSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 +++E + +R K+ AL +L++ WPGN EL + IE + + G + + L ++L Sbjct: 386 HKAVELKLPSRPKLPSGALDKLMAYHWPGNVRELENFIERALIQTPGGELEIDSLLDNLL 445 Query: 570 TEQAT-----DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ---EMSALLGIGRTTL 621 T +V++ +L S V E I A + GG+I + +LG+ TL Sbjct: 446 QTDGTRGSWEPEVNSNQLP---SLETVCAEHIRKALRRAGGKISGPGGAAEMLGVHPNTL 502 Query: 622 WRKMKQHGIDAGQFKRRV 639 ++M + GI +KRR+ Sbjct: 503 RQRMDKMGI---AYKRRL 517 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 130/474 (27%), Positives = 230/474 (48%), Gaps = 30/474 (6%) Query: 183 REVGNLLLTD--SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 RE+ LL + S+ AE + L+A + DD D G I++ A ++ L Sbjct: 99 REIIFFLLDNLKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKP 158 Query: 241 TASQGRAITEL----LTLPAVLQQAIKQAHPLKHVEAT------FESQHQFIDAVITLKP 290 G+ ++EL + P+ + AI++ + ++ T + F D +K Sbjct: 159 EDLIGKNVSELEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKR 218 Query: 291 IIETQG--TSFILLLHPVEQMRQLMTSQLGKVSH-TFAHMPQDD-----PQTRRLIHFGR 342 I+ T L ++Q ++L+ ++S AH+ + Q RLI Sbjct: 219 IVSISKDITDEEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVN 278 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT 402 + A + +L+ GE GVGK +L++ IHN S R+ GP+I +NC + L E G ++ Sbjct: 279 KVAPTESTILIYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKG 337 Query: 403 D----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 G+ +E+A GTL L++I L + LQ LL+V+++ R+ + I +DV Sbjct: 338 AFTGAKSEGKPGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDV 397 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA + DL LV++ +F + LYY L+ +TIPPLR R IP L + L +++ Sbjct: 398 RIIAASNKDLKELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYG 457 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 ++ ++ + + WPGN EL +VIE + + S+N +I DLP L ++ T+ Sbjct: 458 HSKQLTNEVMEIFMKYPWPGNVRELENVIERIVIISENDQITKKDLPGELLNQEETNHSF 517 Query: 579 ATRLSTSLSFAE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +S + E VE + I A + G + + +LG+ ++T+ RK+K++ Sbjct: 518 GVHVSRLMPLKEASALVEYQLIKQAIEECGSSYK-AAEVLGVDQSTIIRKLKKY 570 >UniRef50_A8MJJ5 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=A8MJJ5_ALKOO Length = 494 Score = 165 bits (417), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 124/449 (27%), Positives = 215/449 (47%), Gaps = 36/449 (8%) Query: 214 DGVISWDEQGNLQFINAQAARVLR-LDATASQGRAITELLTLPAVLQQAIKQAHPLK-HV 271 DGV+ D QG ++N + ++ + +G+ + +L+ + +K P+ HV Sbjct: 48 DGVVITDAQGRYVYVNDTWSEMMGGIKLEDVKGKYVKDLIP-DTKIDFVLKTGKPITGHV 106 Query: 272 EATFESQHQFIDAVITLKPIIETQGT-----------------SFILLLHPVEQMRQLMT 314 I + T PI QG F ++ + + Sbjct: 107 --IIAKGPSKIKSFSTYIPIFNKQGKLVAGFIHVIIKGMENAIDFSFRINSMATQLEYYQ 164 Query: 315 SQLGKV---SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 +L K+ +T H+ D P+ + L QA+R++ VL+ GE GVGK L++ +IH+ Sbjct: 165 QELKKIRGAKYTIDHIVGDSPEIQELKRKIIQASRTNSTVLIEGETGVGKELVAHSIHDL 224 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEY 427 S R + P++ VNC L EF G + + G+ R E+A+ G+LFL++I Sbjct: 225 SNRDSFPFVKVNCSAIPRELLESEFFGYEEGAFTGAKKGGKEGRFEMANKGSLFLDEINQ 284 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 L + Q LL+ +++ I R+ + IP+DV+VIA +L ++E+ +F L+Y L+ Sbjct: 285 LPLFSQPKLLRALQEKEIERVGGKGSIPVDVRVIAAANVNLEKMIEEKKFRSDLFYRLNV 344 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARL--VSCAWPGNDFELY 544 +I IPPLR R+ IP +V + + L + ++ I +DA +L V WPGN EL Sbjct: 345 LKIVIPPLRKRKEDIPLIVESLIEKLNFQLGMKVPGISEDAKMKLTEVHYDWPGNIRELQ 404 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQAT--DDVSATRLSTSLSFA-EVEKEAIINAAQ 601 +++E SS + ++ ++ D +S +S E+EKE IINA + Sbjct: 405 NIVERAMNSSWGETLEWVHFKDYFRSKNPKFIDKISQNNMSKIKDIKEELEKETIINALE 464 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + E + LGI RT ++K+K++ I Sbjct: 465 NSKSK-AEAAKKLGISRTAFYKKLKKYEI 492 >UniRef50_B2A7R2 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7R2_NATTJ Length = 674 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 111/400 (27%), Positives = 199/400 (49%), Gaps = 34/400 (8%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 S+L + + +L+ +L+ +DD ++ + +G++ N+ +L ++ T QG + + Sbjct: 202 SILDDITKSEAKLSIILDEVDDAILMTNNRGSILHNNSALVNMLNINKTDLQGTNVDDET 261 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDA-------VITLKPIIE-TQGTSFILLLH 304 L + Q+ I + + +Q ID ++T KP+++ + ++ ++ Sbjct: 262 ILAEIQQKLINKNN----------VNNQVIDIDLLDSSLLVTKKPLMDHNKPFGYVYIMK 311 Query: 305 PVEQMRQL---MTSQLGKVSH----TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 V +R+L + L + H TF + + + G + AR PVL+ G+ Sbjct: 312 NVNNIRRLENKVRKTLAEKGHLARYTFDSIVGKSTELIKCKQKGMKIARLDKPVLIIGQT 371 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLE 413 G GK L +Q+IHN S R P++AVNC L E G + + G+ E Sbjct: 372 GTGKELFAQSIHNYSARKDNPFVAVNCAALHSELLESELFGYEEGAFTGAKKGGKEGLFE 431 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LAHGGTLFL++I ++ ELQ+ LL+V+++ I R+ + P+DV++IA T D L+ Sbjct: 432 LAHGGTLFLDEIGDISSELQAKLLRVLQEKEIMRIGGTKTFPVDVRIIAATNKDFKKLMR 491 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 Q + + LYY L + +P L + IP LV L+ + R ++ + + +LV+ Sbjct: 492 QGKLRKDLYYRLSVLNLKLPSLNDLQEDIPLLVEFFLQ----KTGVRKSMEKEVMDKLVN 547 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573 W GN EL + +E LA SD+ I++ DLP+ + + A Sbjct: 548 HDWDGNIRELENCVEYLAYMSDDS-IKLEDLPDDFYEDTA 586 >UniRef50_Q1PYI3 Strongly similar to sigma 54 response regulatory protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYI3_9BACT Length = 448 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 104/313 (33%), Positives = 159/313 (50%), Gaps = 6/313 (1%) Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 K +TF+ + PQ R+ A S+ VL+ GE G GK L++ AIH SERA P Sbjct: 136 KDKYTFSELVGGSPQMHRIFKMIEDVAPSTASVLIMGETGTGKELVAHAIHYRSERAGKP 195 Query: 379 YIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSA 435 ++A++C + L E G ++ T R R ELA GGTLFL+++ +++++Q Sbjct: 196 FVALHCAALSEGILESELFGHEKGAFTGAIQSRKGRFELADGGTLFLDELAEMSLKVQVK 255 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+V+++G R+ + I +DV+ IA T +L V + RF L+Y L+ I +PPL Sbjct: 256 LLRVLEKGEFERVGGEKTIKVDVRCIAATNRNLEEEVSEGRFREDLFYRLNVINIQMPPL 315 Query: 496 RMRRGSIPALVNN-KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 R R+ IP L N ++ +K D +A+ L+S W GN EL + IE + Sbjct: 316 RERKDDIPILSNYFAVKYAKKYKKEIKGFDPEAIKALLSHHWQGNIRELQNTIERAIVLC 375 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 + I V LPE + + V + T+L E EKE I Q+T G Q + +L Sbjct: 376 KSDTISVDHLPESIMPDNEYIPVIKIPIGTTLK--EAEKEIIQRTLQITNGSKQSAAKIL 433 Query: 615 GIGRTTLWRKMKQ 627 GI + K K+ Sbjct: 434 GISTRKIEYKTKE 446 >UniRef50_Q214B6 Sigma-54 factor, interaction region n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q214B6_RHOPB Length = 628 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 148/550 (26%), Positives = 261/550 (47%), Gaps = 64/550 (11%) Query: 128 VKTMADQHFKQVLWNWA-FCATPLFDSKGRLTGTIALACPVEQTTAADLPLT-LAIAREV 185 + T+A + +++ N++ C P+F R +G I A Q + + L++AR Sbjct: 96 IATVAFPLYAEIMQNYSEMCGIPIFTRVIRESGEIEEALEELQARGIRVVIGGLSVARMA 155 Query: 186 GNL----LLTDS------LLAETNRH-----------LNQLNALLESMDDGVISWDEQGN 224 ++ D+ L E RH N ++A+L ++G++ D G Sbjct: 156 KRFGIAAIMGDADEMAIRLAVEQARHTLKYVLNLDRQYNIVSAILNCANEGILGVDGSGT 215 Query: 225 LQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHV-----EATFESQH 279 + +N A R+L +G I +L + + AI P++ +AT Sbjct: 216 IFELNHHAHRLL----GCGRGDNINTILP-ESDSRIAITNGEPIRSRIVNSGKATLIFNA 270 Query: 280 QFID-------AVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHT-FAHMPQDD 331 ID V+T++ QG S +++RQ ++ G V+ F + Sbjct: 271 SPIDYGENGGGTVLTVQEGDYIQGIS--------QKIRQQHIAK-GHVARIRFEDIVGKG 321 Query: 332 PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAA 391 I ++ A S VL+ GE G GK L +Q+IHN S R + P++A+NC + Sbjct: 322 EAIHHTIERAKKFALSESSVLIIGETGTGKELFAQSIHNHSRRHSKPFVAINCAALPNNV 381 Query: 392 LAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITR 447 L E G R + G+ ELAHGG++FL++I + +E+Q+ LL+VI++ + R Sbjct: 382 LESELFGYVRGAFTGAKDAGKSGIFELAHGGSVFLDEIGEIPIEMQAKLLRVIQERQVQR 441 Query: 448 LDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVN 507 + +L+P+DV+VI+ T ++ V+ RF LY+ L+ E+ +PPLR R G +P L+ Sbjct: 442 IGDDKLVPVDVRVISATNKNVDNEVKLGRFREDLYFRLNTLELELPPLRERTGDVPTLIR 501 Query: 508 NKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH 567 + + +R + DA L +WPGN +L + IE L + D + +S++ + Sbjct: 502 HFMGRAGRR---EVSFTPDAQRFLNVYSWPGNVRQLGNFIERLNVLYDQPSMSLSEVCDL 558 Query: 568 LFTEQ-ATDDVSATRLSTSLS------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 L T A+ +A + ++L+ ++E++ I A +T G ++ S +LGI +T Sbjct: 559 LGTAAGASVQGAAQQRPSTLAPDDENVLEKMERDLIAEALDITTGNREKASIILGISPST 618 Query: 621 LWRKMKQHGI 630 L RK KQ+G+ Sbjct: 619 LGRKKKQYGL 628 >UniRef50_UPI0001C430E3 transcriptional activator of arginine utilization operons n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430E3 Length = 474 Score = 164 bits (416), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 134/456 (29%), Positives = 208/456 (45%), Gaps = 38/456 (8%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP----AVLQQ 260 L +L+++D GV + G N + + + + + ++ + L Q Sbjct: 16 LTQVLDTIDVGVHIVNSHGETIMYNKKMTEIESMPPHEVLHKNLLDVFLFKEEQTSTLLQ 75 Query: 261 AIKQAHPLKHVEATFESQHQF-IDAVITLKPIIETQGTSF--ILLLHPVEQMRQLMTSQL 317 A+ + +++ + + F I AV P+ + G L + ++ LM QL Sbjct: 76 ALHKGQHSYNIKQQYYNNKGFPITAVNDTHPLKDKDGEIIGAFELSKDITRLEVLMKDQL 135 Query: 318 GK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 K +TF+ + ++IH ++A R+S VLL GE G GK + +Q+IHN SER Sbjct: 136 HKSDQTRYTFSKIIGQSEAISQIIHEAKRATRTSSSVLLTGETGTGKEIFAQSIHNGSER 195 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSR-------LELAHGGTLFLEKIEY 427 A GP+I+ NC AAL + I G + G + E A GGTL L++I Sbjct: 196 AGGPFISQNC-----AALPDNLIEGILFGTKKGAFTGAVEHPGLFEQAEGGTLLLDEINS 250 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 L + LQ+ LL+ I++ I R+ + P+DV++I+T D V R + L+Y L Sbjct: 251 LNLPLQAKLLRAIQEKTIRRVGDTKDTPVDVRIISTMNEDPFEAVSNGRLRKDLFYRLGV 310 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSV 546 + IPPL+ R G IP LV + L KRF ++ I D L WPGN EL V Sbjct: 311 VSLYIPPLKDRYGDIPLLVEHFLAKFNKRFQMQVDWISADVLELFEQYEWPGNVRELEHV 370 Query: 547 IEN-LALSSDNGRIRVSDLPEHL---FTEQA---------TDDVSATRLSTSLS--FAEV 591 IE+ + + S ++ + LP H+ FT Q + T L L AEV Sbjct: 371 IESAMNIMSTERQMELYHLPMHIRRRFTAQTEPTEGKAEHVSEAKETFLHKPLKEHLAEV 430 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 E I A V G I + + LGI R L ++K+ Sbjct: 431 ENYYIKQALTVHKGNISQAAKALGISRQNLQYRLKK 466 >UniRef50_C6PY15 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY15_9CLOT Length = 554 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 100/328 (30%), Positives = 176/328 (53%), Gaps = 35/328 (10%) Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 +TF + + + + ++ + S+ +L+ GE G GK + +QAIHN S+R P+IA Sbjct: 230 YTFDKIIGKSKKITNAVEYAKKISDSNSTILITGESGTGKEIFAQAIHNYSQRKDMPFIA 289 Query: 382 VNC----------ELYG--DAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 +NC EL+G D A F G + G + E+A GGT+FL++I + Sbjct: 290 INCGALPSNLIELELFGYEDGA----FTGAKK----GGNAGKFEMAEGGTIFLDEIGEMP 341 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 +++Q +LL+V+++GVI R+ + I ++V++IA T DL V + RF + L+Y L+ Sbjct: 342 LDMQVSLLRVMEEGVINRIGGCKQILLNVRIIAATNKDLKEEVSKGRFRKDLFYRLNVLP 401 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIE 548 + +P LR R+ +P LV ++ KR + R+ ID++++ L W GN EL +VIE Sbjct: 402 LHVPSLRDRKEDVPLLVEYYMKKASKRLNKRIVDIDENSMENLKQYEWTGNVRELENVIE 461 Query: 549 NLALSSDNGRIRVSDLPEHL-FTEQATDDVSATRLST-----SLSFAEVEKEAIINAAQV 602 L ++++ LPE +++ ++ T +++ +EK IIN Sbjct: 462 -LTVNTE-------KLPEEFCYSKVYEINIENTVFKQNTQIGNMNLELLEKNHIINVLHN 513 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGI 630 G I + ++GIGR TL+RK++++ I Sbjct: 514 FKGNITLAAKVMGIGRNTLYRKIQKYHI 541 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 54/124 (43%) Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 ++ +C + D CIL+ GD L++ L G Y E IGT A+S+A ++ Sbjct: 82 DFTKNTKCLWILTDMEGCILNVIGDEDILREAFKLKVFPGAYMNEQSIGTNAMSIALMNN 141 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 V+ + HF W A P+ + G + G + L E + L + +A A + Sbjct: 142 LPVQVSGEDHFLNSYHRWTCSAAPIRNGIGEIIGVLDLTGYSECVNSHTLGMVVASANAI 201 Query: 186 GNLL 189 +L Sbjct: 202 EKIL 205 >UniRef50_Q5WL87 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WL87_BACSK Length = 569 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 129/449 (28%), Positives = 213/449 (47%), Gaps = 38/449 (8%) Query: 205 LNALLESMDDGVISWDEQGNL-QFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 L A+LE+ +G++ D+QG + + NA + + D +G+ + +++ L + +K Sbjct: 131 LEAILENAYEGIVIVDKQGKIVKMNNAYRSFIGGKDEAEVEGKFVADVIE-NTRLHEVVK 189 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTSQLGKV 320 P + E Q+ + + PI + G +L+ V ++ +++ Q +V Sbjct: 190 SGIPERGEIQRIEGQNMVVHRI----PIWQNHRVVGAVGMLIFEGVSELYEIL--QRARV 243 Query: 321 ---SHTFAHMPQDDPQT---RRLIH----------FGRQAARSSFPVLLCGEEGVGKALL 364 + + P T RRLI F R+ AR+ VLL GE G GK L Sbjct: 244 FLSEESLSTEPTKKNATSVERRLIGRSEALQSCKCFARKVARTKATVLLTGETGTGKELF 303 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTL 420 ++ IH S +A GP++A+NC + L E G + G + + E A GGTL Sbjct: 304 ARLIHQMSNQANGPFVAINCAAMPETLLEAELFGYEEGAFTGARRGGAVGKFEQASGGTL 363 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++ ++ LQ+ LL+V++ + R+ + R + D ++IA T ADL LV +F + Sbjct: 364 FLDEAGEMSNALQAKLLRVLETKQVDRVGSCRPVQTDFRLIAATNADLNQLVADGKFRKD 423 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGN 539 LYY L A + IPPLR R+ IP L++ + + + R K +DAL + WPGN Sbjct: 424 LYYRLVAITLNIPPLRERKEDIPYLISAFMDRFAQEYGLRHKRFCEDALHAFLEYDWPGN 483 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL + I+ + + ++ + LP L A + T S EKE I A Sbjct: 484 VRELANAIDYIMAIGEEEKVTSNTLPPFLRNHAAKKESLKTVARRS------EKERIEQA 537 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + G + + LLGI R TL+RK+K+ Sbjct: 538 IVLANGNKAKAAKLLGIHRATLYRKLKEQ 566 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 164 bits (415), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 134/471 (28%), Positives = 219/471 (46%), Gaps = 50/471 (10%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 TD L + + L A++E DG++ D +G + ++ A L ++ + G+ +TE Sbjct: 103 TDEFLHVNDHQVELLEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVTE 162 Query: 251 LLT---LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--------- 298 ++ + V + + L+ + + + T PII+ + Sbjct: 163 VIENTRMHIVAKSGKTEVAELQKIRGDY--------MIATRVPIIKNGQVTGAVGKVLFK 214 Query: 299 ----FILLLHPVEQMRQLMT------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 F L V M + + +L K ++ F+++ P + ++AA+S Sbjct: 215 NVGGFNSLYKRVNSMEKELKRYKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKSD 274 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGR 408 VLL GE G GK L + +IHNES RA G ++ VNC AA+ + + + E G Sbjct: 275 SNVLLLGESGTGKELFAHSIHNESRRAFGSFVKVNC-----AAIPADLLESELFGYEEGS 329 Query: 409 LS---------RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 + + E A GGT+FL++I L + +Q L+V+++ + ++ + +DV+ Sbjct: 330 FTGAIKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVR 389 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 VIA T DL +V+ F LYY L+ IT+P LR R+G IP L L +R + Sbjct: 390 VIAATNRDLEKMVQAGEFRLDLYYRLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNM 449 Query: 520 RLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGR-IRVSDLPEHLFTEQATDDV 577 + I +A+ L WPGN EL +VIE ++N + IR LPE + Q V Sbjct: 450 VARDIHPEAILALEQYEWPGNIRELENVIERAVNVAENEKMIRRCHLPEKITGVQFRSGV 509 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E EKEAI+NA +VT + + LL I RT+L+ KMK+H Sbjct: 510 RP----LEQVMEETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKKH 556 >UniRef50_C4XUF1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XUF1_DESMR Length = 445 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 132/438 (30%), Positives = 201/438 (45%), Gaps = 26/438 (5%) Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVLQQAIK 263 LE++ D V + D +++ N AA V R + GR E+ + VL+Q++ Sbjct: 18 LENVADAVFAVDRDFIVRYCNLAAAEVARCAPEEAIGRTCREVFGVRNCRTVCVLRQSMD 77 Query: 264 QAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH 322 +A + + T + + + I+ PI GT ++ V+ R L S G VS Sbjct: 78 EARAIANRIVTLKRTGCPEVPVSISAAPIWAMGGT----VIGGVQVFRDL--SGGGFVSR 131 Query: 323 TFAHMPQDD-----PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 P DD PQ ++ Q A+S VLL GE G GK L ++AIH S+R G Sbjct: 132 LAGLQPLDDFGTRDPQLSEIVRMLPQIAQSDSTVLLLGESGTGKELFARAIHKLSQRHGG 191 Query: 378 PYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 P++AVNC + + E G G TD + R LA GTLFL++I L +Q+ Sbjct: 192 PFVAVNCGALPEQLMESELFGYKSGAFTDARKDKPGRFALAEAGTLFLDEIGDLPYAMQA 251 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 +L+ +++ L +P DV+V+A T DL +V + F + L+Y L I IP Sbjct: 252 KILRALQERAFEPLGGVETVPADVRVVAATNRDLGRMVAEGTFRQDLFYRLSVVVIRIPA 311 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R +P L L S ++ + +A+ARL+ +PGN EL ++IE A+ Sbjct: 312 LRDRLDDVPLLTERLLGRCRMAVSKNIETVSPEAMARLMRHDYPGNIRELENIIEYAAIL 371 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 I + LPEHL E R + AE+ +A +A + GG Sbjct: 372 CQGQTIELCHLPEHLRGEAGACPSRCGR-----TMAEIRFQAASDAVERHGGNRNAACRE 426 Query: 614 LGIGRTTLWRKMKQHGID 631 LGI + TL R + + D Sbjct: 427 LGISKDTLRRILGRRDAD 444 >UniRef50_B2V7B6 Two component, sigma54 specific, transcriptional regulator, Fis family n=4 Tax=Aquificales RepID=B2V7B6_SULSY Length = 466 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/336 (30%), Positives = 171/336 (50%), Gaps = 9/336 (2%) Query: 311 QLMTSQLG--KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + SQL K F ++ +P + +I + + A F +L+ GE GVGK L ++AI Sbjct: 131 EYYKSQLNVIKSRDKFKNIITINPLMQEVIDYSIKIANFDFTILIYGESGVGKELFAKAI 190 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKI 425 H S+R ++ VNC + EF G + T EN R LELA GGT+FL++I Sbjct: 191 HEASQRRNNVFLPVNCATISKDVMESEFFGAKKGVYTGAENDRPGILELADGGTIFLDEI 250 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L ++LQ+ L+ ++ + R+ +DV+VIA T DL LV Q +F LYY L Sbjct: 251 SELPLDLQAKFLRFLQDKEVRRIGDVSAKKVDVRVIAATNKDLKELVNQGKFREDLYYRL 310 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 +I IPPLR R+ IP L L K+++ +K DAL L++ +WPGN +L Sbjct: 311 EGIKIEIPPLRERKEDIPVLAYYFLEEFNKKYNADVKGFSKDALEALINYSWPGNVRQLQ 370 Query: 545 SVI-ENLALSSDNGR-IRVSDLPEHLF-TEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 +V+ E ++ G+ I ++ LP+ + E + L+ ++ + + N Sbjct: 371 NVVNEACIIAFAKGQFIELNHLPKEITGIEDKHAMIFDYNLAKKMNDTNFTTKYLRNLLS 430 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 T G I + + L I R +L + +K++ +D +F++ Sbjct: 431 FTKGNISQAAKLANIERQSLQKLLKKYNVDPQEFRK 466 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 148/504 (29%), Positives = 230/504 (45%), Gaps = 37/504 (7%) Query: 147 ATPLFDSKGRLTGTIA---LACPVEQTTAADLPLTLAIAREVGNLLLTD---SLLAETNR 200 P D+ R T A L PVE+ L A+AR + L D +L E R Sbjct: 81 GNPSLDTASRAVSTGAFEYLIKPVERDA-----LLAAVARAHAHKSLQDERAALHDELQR 135 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL-----TLP 255 L A+ S+ D ++S G + IN VLRL +GR E+ L Sbjct: 136 LRAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGEWESQLG 195 Query: 256 AVLQQAI--KQAHPLKHVEATF-ESQHQFIDAVITLKPIIETQGTSF--ILLLHPVEQMR 310 VL+ A+ +Q P + V T E Q + ++ P+ G +L+L + ++ Sbjct: 196 DVLRHALESRQRVPRRRVNITVDEGASQVFE--VSASPLRGETGDYLGAVLVLRDISRLA 253 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + P +R+ H A + VL+ GE G GK L+++A+HN Sbjct: 254 ACCPPGGAPGEWGLVGL---SPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHN 310 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEY 427 RA GP I VNC + L E G G T R+ R +LAHGGT+FL++I Sbjct: 311 AGPRATGPLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIFLDEIGD 370 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 L+ ++Q LL+V+++ R+ R +DV+VIA T +L V F LYY L Sbjct: 371 LSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRV 430 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR-LVSCAWPGNDFELYSV 546 E+ +PPLR R + L + + ++FS + +A +R L++ +WPGN EL Sbjct: 431 VELHMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRELRHA 490 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 +E+ + RI ++DLP + +A+ A R + V + A+ A + GG Sbjct: 491 VEHGFILCKGERIDLADLPPDVQGTEASVFPRAER-------SGVHEAAVREALKKAGGN 543 Query: 607 IQEMSALLGIGRTTLWRKMKQHGI 630 + LLG+ R TL+RK+ ++GI Sbjct: 544 KARAARLLGVARQTLYRKLAEYGI 567 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 135/458 (29%), Positives = 222/458 (48%), Gaps = 34/458 (7%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE------LLTL 254 L+ L A+L + +D + +E+ + + N A R + + IT+ L+ L Sbjct: 4 ELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLMVL 63 Query: 255 PAVLQQA--IKQAH---PLKHV----EATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 + +A Q H P KHV F+++ + I AV + I + + L+ Sbjct: 64 KVLRTKARITDQYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVSTS 123 Query: 306 VE--QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 +E ++RQ M + + F+ + R I +AA++ L+ GE G GK + Sbjct: 124 IELNELRQKMYTSYEETP--FSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEI 181 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGT 419 ++AIH S R GP+I VNC A E G G T E G+ ++E A GGT Sbjct: 182 CARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGT 241 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I L +++Q LL+V+++ VI R+ I+V+ IA T D+ ++++ F Sbjct: 242 LFLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRS 301 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD-----DALARLVSC 534 LYY L+ +IT+PPLR+R IP L R K+F+ + K+ + DAL+ L + Sbjct: 302 DLYYRLNVIQITMPPLRVRTDDIPVLA----RYFLKQFAVQYKMPEPELAPDALSFLQAY 357 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE--VE 592 WPGN EL +++E + + S+ I + L + SA S +L + +E Sbjct: 358 HWPGNVRELRNLMERMVILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENME 417 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 K+ I A + GG + LGI R TL++K+K+ GI Sbjct: 418 KQLIEKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_A1VG32 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=A1VG32_DESVV Length = 539 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 127/445 (28%), Positives = 210/445 (47%), Gaps = 24/445 (5%) Query: 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAI 262 N++ +L+++ DGV+S D G + IN A R++T L L + Sbjct: 98 NRIKVVLDTIGDGVMSIDGGGRITSINKVAREAYGCAGEDVTERSLTSLRLPDHGLLDCL 157 Query: 263 --KQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLG 318 ++ H + AT + QF +T PI + G + + + ++R+L + + Sbjct: 158 HGRELHDARRELATPLGKLQFF---VTRTPIRDGVGRIIGAVEIARDMREIRKLARTLVD 214 Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 F + P I F R+ A + + + GE G GK L ++A+H ES R GP Sbjct: 215 ADHVGFDDIVGHHPAIEAAIAFARRVAATDAVIAIRGESGTGKELFARAMHAESGRK-GP 273 Query: 379 YIAVNCELYGDAALAEEFIGGDRT----DNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++ +NC + L E G +R G+ E A GGT+FL++I + + Q+ Sbjct: 274 FVPINCAALPEQLLESELFGYERGAFTGGRREGKPGLFESARGGTVFLDEIGDMPLASQA 333 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 +L+V+++ + R+ +P+D ++I T L +VE RF + LYY ++ + IPP Sbjct: 334 KILRVMQEQRVRRIGGEAEVPVDARIITATNRPLERMVEDGRFRQDLYYRINVLPMHIPP 393 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR RRG IP L N+ L+ L R D ALARL S WPGN EL +V+E A+ Sbjct: 394 LRERRGDIPLLANHFLQQLASRIGGAAPAFTDGALARLRSHEWPGNVRELKNVVERAAIL 453 Query: 554 SDNGRIRVSDLPEHLFTEQATDDV-SATRLSTSLSFAEVEKEAIINAAQVT-------GG 605 + V D LF+ + V +A R +++ + KE + N + Sbjct: 454 AGGA---VVDDQFILFSHELGKGVFNAARTASAAGQGDTLKEQVANFEKKIVEDVVRRAP 510 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGI 630 I++ + +LGI T L KM++HG+ Sbjct: 511 SIRKAAKILGISHTALLDKMRRHGV 535 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 129/476 (27%), Positives = 218/476 (45%), Gaps = 52/476 (10%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL----LTLPAVLQ 259 +L A++ES DG+ D G IN R+ + GR + EL V + Sbjct: 112 ELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKDEVIGRRLDELKAEGYFSEIVYK 171 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG-----TSFILLLHPVEQMRQLMT 314 Q +K+ P+ ++ + + V+T P+++ G + + + + +R+ + Sbjct: 172 QVVKEKRPVTILQKIKNEK----EVVVTGNPVLDNSGEVKRVVTNVRDISELNMLRRELA 227 Query: 315 SQLGKVSHT-------------FAHMPQD-------DPQTRRLIHFGRQAARSSFPVLLC 354 K H F QD P + +I+ + AR+ VL+ Sbjct: 228 EVKEKSKHYQRKIVELQEKLTLFCQAQQDFKGFIIKSPLMKDVIYKALRVARTDTTVLII 287 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLS 410 GE G GK ++++ IH S R ++ VNC + + EF G G T + G++ Sbjct: 288 GESGTGKEVIARFIHFNSLRKDKAFLPVNCGAIPENLMESEFFGYEPGAFTGALKTGKMG 347 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 ELA GGTLFL+++ L + LQ LL+ ++ I RL + + I +DV++IA T +LA Sbjct: 348 FFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTKPIKVDVRIIAATNRNLAK 407 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 LVE+ +F LYY L+ I IPPLR R+ I + L + +++ + K + L Sbjct: 408 LVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTRINEKYGSEKKFTREVLEI 467 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL-----------FTEQATDDVSA 579 L WPGN EL +VIE+ + S + I V DLP HL + + Sbjct: 468 LKEYKWPGNIRELENVIEHAYVVSQD-EINVEDLPIHLDSLYGEPGNIALIRKTLQNREN 526 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 L ++S E + +I A + G +++LG+ ++T+ RK+K++ ID + Sbjct: 527 ITLDEAISLVE---KKLIEDALLKYGTETRAASVLGVNQSTISRKIKKYNIDVKKI 579 >UniRef50_A8S4D9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S4D9_9CLOT Length = 645 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 119/439 (27%), Positives = 216/439 (49%), Gaps = 30/439 (6%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS-QGRAITELLTLPAVLQQAIKQ 264 + +L + D +I+ G +Q +N QA R +L + A GR + E+ PA+ + + + Sbjct: 211 STILNTSSDALIAVSGSGLIQALNNQAYRTFQLSSQADYTGRPVEEVC--PALKWKDVVE 268 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQM-------RQLMTSQ 316 + ++ + + + +P+ ++ G I++ EQ+ RQ + Q Sbjct: 269 TGREREEVIQWKDRKLYTE----YRPVLVDKMGKGAIIVARYTEQIIEAETKIRQSLAKQ 324 Query: 317 LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 ++F + P R I ++ +R VL+ GE G GK L + +IH ES R+A Sbjct: 325 GLTAKYSFDDIIGSSPAIRENILMAKRYSRVDSNVLIVGETGTGKELFAHSIHRESRRSA 384 Query: 377 GPYIAVNCELYGDAALAEEFIGGD----RTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 P++A+NC + L E G + ++NG+ ELAH GT+FL++I + + L Sbjct: 385 EPFVALNCAALPENLLESELFGYEPGAFSGASKNGKTGLFELAHKGTIFLDEIGEIPISL 444 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q+ LL+V+++ I R+ + R+ P+DV+VI+ T ++ +++ +F LYY L+ +ITI Sbjct: 445 QAKLLRVLQEREIRRIGSNRVQPVDVRVISATNINIEEKIQEGQFRADLYYRLNLLDITI 504 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-----KIDDDALARLVSCAWPGNDFELYSVI 547 PPLR R I +V+ L RF+ + ++ +A+ + WPGN EL ++ Sbjct: 505 PPLRERGDDIREMVDFYL----TRFACEMGKPIPRLSKEAVDLMTHYGWPGNVRELRNIC 560 Query: 548 ENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI 607 E L + SD I + ++ + + T+ T + + I+ A + Sbjct: 561 ERLIVLSDTTEIGLREIQMLKIFRKKEGPLPGTQ--TPDKETDQPETGIVYANLKPRKKK 618 Query: 608 QEMSALLGIGRTTLWRKMK 626 Q+++ LG+ RTTLWR K Sbjct: 619 QDIAKELGVSRTTLWRMEK 637 >UniRef50_Q43965 MopR n=4 Tax=Acinetobacter RepID=Q43965_ACICA Length = 560 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 164/304 (53%), Gaps = 11/304 (3%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 R++ ++AA S VLL GE GVGK ++ IHN S+R A P++AVNC + Sbjct: 253 RKVCDLLKKAAGSKVAVLLQGETGVGKEAFARGIHNGSQRQAQPFVAVNCACIPPDLIES 312 Query: 395 EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G G T R+ + E AHGGT+FL+++ L+ Q+ALL+++++G R+ Sbjct: 313 ELFGVEKGAFTGAVQSRMGKFERAHGGTIFLDEVVELSPRAQAALLRMLQEGEFERVGDS 372 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 R +DV+++A T DL V+ +F LYY L+ F + IPPLR RR IP L+N+ L Sbjct: 373 RTRQVDVRLVAATNEDLEQAVKDGKFRADLYYRLNIFPVIIPPLRERREDIPLLINHFLA 432 Query: 512 SLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGR-IRVSDL-PEHL 568 E ++ LK + D A ++ WPGN EL +++E L +D+ + I++ L P+H Sbjct: 433 RFENMYNKTLKGLSDKAKNFMMKYDWPGNIRELENLLERATLLTDHQQEIKLDSLFPQHK 492 Query: 569 FTEQATDDVSA-----TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 E + + S + S ++E+ I +A + + E + +LGI R TL Sbjct: 493 DLEAVGETAQSLINVEDLFSENFSLDQLEQNIIRSAMDKSQQNVSEAARMLGISRATLDY 552 Query: 624 KMKQ 627 ++K+ Sbjct: 553 RLKK 556 >UniRef50_B8FJD2 Transcriptional regulator, NifA subfamily, Fis Family n=2 Tax=Bacteria RepID=B8FJD2_DESAA Length = 1038 Score = 164 bits (414), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 165/304 (54%), Gaps = 15/304 (4%) Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 R++++ ++ A + VL+ GE GVGK L+S AIH S RA P+I VNC ++ + +A Sbjct: 740 VRKVLNDVKKIAATDSTVLILGETGVGKELISTAIHERSSRAGKPFIRVNCSMFPEGLIA 799 Query: 394 EEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 E G ++ T + RL R ELA GGTLFL++I ++ E+Q LL+V++ R+ Sbjct: 800 SELFGHEKGAFTGADKRRLGRFELADGGTLFLDEIGDISHEVQVRLLRVLQNKEFERVGG 859 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL 510 R + D +++A T DL V+ +F LYY L+ + IPPLR R+ IP LV+ L Sbjct: 860 RSTLRSDFRLLAATNRDLREDVKTGKFREDLYYRLNVLSLKIPPLRERKEDIPLLVDYFL 919 Query: 511 RSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 K R + + L +LV+ WPGN EL +VIE A+ S R+ + D LF Sbjct: 920 DRHAKNLGKPRGAVTPEDLDKLVAYDWPGNVRELENVIERSAILSSGARLEIPD----LF 975 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ---EMSALLGIGRTTLWRKMK 626 A+ + +LS E E+ I+ A + TGG+++ + LL I TL+ ++K Sbjct: 976 QSGASFALD----REALSLEENERRHILWALKKTGGKVRGPGGAAELLEINHNTLFSRIK 1031 Query: 627 QHGI 630 + GI Sbjct: 1032 KLGI 1035 >UniRef50_C1F3N9 Sigma-54 dependent DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3N9_ACIC5 Length = 484 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/322 (31%), Positives = 171/322 (53%), Gaps = 16/322 (4%) Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F ++ P+ +L + A+++ PVL+ GE G GK L+++AIH A+ P++ V+ Sbjct: 155 FGNIVGQSPEMEKLYRILSKVAQTTHPVLILGESGTGKELVARAIHVHGHYASKPFLPVD 214 Query: 384 CELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 C + E G G T R L A GGT+FL++I + ++LQ+ LL+ + Sbjct: 215 CSSIVPTLMESELFGHVKGAFTGATRARDGLLVAAEGGTVFLDEIGEMPLDLQAKLLRAL 274 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ + + A + I+V+++A T +LA +VEQ RF R LYY L+ ++ +PPLR RR Sbjct: 275 QEKEVRPVGATHRVKINVRILAATNRNLAEMVEQGRFRRDLYYRLNVVKLVLPPLRERRE 334 Query: 501 SIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIR 560 IP L + L + + + + ++ +ALA + WPGN EL + ++ +++ Sbjct: 335 DIPLLAAHFLDRIGREYGKKFRLSAEALAMISEYPWPGNVRELSNALDRACSFCSGEQVQ 394 Query: 561 VSDLP---EHLFTEQATDDVSATRLSTS--------LSFAEVEKEAIINA-AQVTGGRIQ 608 DL + + + A R LS AE+EK AI++ AQV G ++ Sbjct: 395 AGDLTSPVKDFYLQHAAMQRKRPRTRAELPEAEAEVLSLAEIEKRAILSTLAQVKGDKLL 454 Query: 609 EMSALLGIGRTTLWRKMKQHGI 630 + LL IG+TTL+RK+K++G+ Sbjct: 455 -AARLLDIGKTTLYRKLKEYGV 475 >UniRef50_Q1PZ68 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ68_9BACT Length = 470 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 96/288 (33%), Positives = 153/288 (53%), Gaps = 13/288 (4%) Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENG 407 VLL GE G GK L + IH S+R GP+I +NC + + E G +R T Sbjct: 174 VLLQGESGSGKELAAHEIHRRSKRKNGPFIVMNCAAVPETLIESELFGHERGSFTGATER 233 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R+ + E+A+ GT+ L++I +++ QS LL+V+++ RL + +DV++I+ T D Sbjct: 234 RMGKFEMANNGTILLDEIGDMSLSTQSKLLRVLQEQKFERLGGTETLAVDVRIISATHRD 293 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKR-FSTRLKIDDD 526 L +E+ RF LYY ++ I IPPLR R+ IP LVN ++ K+ + + I +D Sbjct: 294 LEEEIEEGRFREDLYYRINVVNIKIPPLRKRKEDIPLLVNRFIQHFSKKHYKNVVSISND 353 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 A+ +L + WPGN +L + IE+ + ++N + +SDL E + E+ T D S + L Sbjct: 354 AMKKLSAYNWPGNIRQLKNTIESAIVLTNNDVLDISDLSEDIIREEKTPD-STKNVHYHL 412 Query: 587 SFAEV--------EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 SF E EK+ I + GG I + L + R L +K+K Sbjct: 413 SFREAKKILIENFEKDFISKKLEECGGNISHTAEALDMHRQNLQQKIK 460 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 99/311 (31%), Positives = 162/311 (52%), Gaps = 5/311 (1%) Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 + F ++ D P+ + ++AA + VL+ GE G GK L +QA+H ES RA +I Sbjct: 148 YRFHNIVGDAPELHAVYEVVKRAAPTRATVLILGESGTGKELFAQALHEESPRADKAFIK 207 Query: 382 VNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 VNC + L E G ++ T + R ELA GGTLFL++I ++ LQ LL+ Sbjct: 208 VNCAALSETLLESELFGHEKGAFTGAIGRKEGRFELADGGTLFLDEIGDISPALQIKLLR 267 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V++Q R+ + + +DV+++A T DLA V+ RF LYY L+ +T+PPLR R Sbjct: 268 VLQQREFERVGGTQTLKVDVRLVAATNRDLAAEVKNGRFREDLYYRLNVVAVTLPPLRQR 327 Query: 499 RGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557 +G IPALV++ + K + ++ + L ++S WPGN EL +V+E + Sbjct: 328 KGDIPALVSHFIDKYSKAYGKDIRGLAPGTLNAVLSHDWPGNVRELENVVERAVVLCKGS 387 Query: 558 RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 + DLP L + + L + E+E+EAI+ ++ GG + +LGI Sbjct: 388 ELTADDLPPTLRGPRPRERAPGA-LIPGATLYEIEREAILRTLEMVGGSTSRAAEILGIS 446 Query: 618 RTTLWRKMKQH 628 + ++K++ Sbjct: 447 VRKIQYRLKEY 457 >UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2 Tax=Rhodocyclaceae RepID=A1K9P3_AZOSB Length = 674 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 154/642 (23%), Positives = 273/642 (42%), Gaps = 38/642 (5%) Query: 19 SWERCNKLMKRETWNVPHQAQGVT-FASIYRRKKAMLTLGQAALEDAWEYMAPRECALFI 77 SW+RC V G + A + R + +LT +E +E + + + Sbjct: 40 SWQRCRDGGVSAQSTVAGDPAGRSRLAEVRERSEHLLTQAAGIMEHVFEQIRASGSMVLL 99 Query: 78 LDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFK 137 D IL GDP + + + G E GT A+ +A I + + + +HF Sbjct: 100 ADVDGVILHSLGDPDFIARAQRVALQPGASWDEAARGTNAVGIALIEQRPAEVLGAEHFL 159 Query: 138 QVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAE 197 + A P+F G L G + ++ + L A+ + L + Sbjct: 160 ERNGILTCSAAPVFKPCGMLAGVLDISGDYRSNQRHTMGLVRLAAQLLEKRLFEVDFARQ 219 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL--LTLP 255 ++ + S+ +G+++ G + N A L + G A + + ++L Sbjct: 220 VLIAVHARPECVGSLQEGLLAVSADGCIVGANPAAREALGITDIGPGGLAFSSVFRVSLD 279 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 ++ + L+ +EA + + +L P E G S P + + Sbjct: 280 VFFDRSRRDPASLQMLEAR-RGERIYTRLKSSLPPRTEPVGGS--APARPAVTAKAETSE 336 Query: 316 QL---GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + G+V T A + D + + + + P+L+ GE GVGK L ++A H Sbjct: 337 AVPRDGRV--TLACLATGDSRLQLALDRAGKVIGKDIPLLIQGESGVGKELFARAFHFSG 394 Query: 373 ERAAGPYIAVNCELYGDAALAEE---FIGGDRTD-NENGRLSRLELAHGGTLFLEKIEYL 428 R GP++A+NC + + E ++GG T G + +++ AHGGTLFL++I + Sbjct: 395 PRRDGPFVALNCAAIPENLIESELFGYVGGAFTGARREGAVGKIQQAHGGTLFLDEIGDM 454 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + +Q+ LL+V+++ +T + + R +P+D+ ++ T L V++ F LYY ++ Sbjct: 455 PLGMQARLLRVLQERSVTPIGSVRQVPVDISLVCATHRLLRESVQKGSFREDLYYRVNGL 514 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 +T+PPLR RG I +V+N L + E +++I + + WPGN +L +VI Sbjct: 515 TVTLPPLR-ERGDIGRIVSNIL-AAEAGDGRQIRIGAEVMDFFERYPWPGNVRQLQNVIR 572 Query: 549 NLA--LSSDNGRIRVSDLPEHLF-------TEQATDDVSATRLSTSL------------S 587 L D IR LPE LF ++ D + + T L S Sbjct: 573 VAVALLDDDEDEIRPLHLPEELFGADTMTEGDRHRPDERPSSVVTPLGQPAAGIATGGRS 632 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+E EAI + GG + + LGI R TL+RK+ + G Sbjct: 633 LDEIELEAIAVVMREVGGNVSAAARRLGISRNTLYRKIGRIG 674 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 135/455 (29%), Positives = 210/455 (46%), Gaps = 54/455 (11%) Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 L L+++MD GV++ D +G + N A R+L E+ LP ++ Sbjct: 156 LGAFRRLIDAMDRGVVAIDGKGLIWHANHSADRILN-----------REVQGLPLTIETT 204 Query: 262 IKQAHPLKHVEATFESQ-HQFIDAVITLKP--------IIETQGTSFILLLHPVEQMRQL 312 + + T E Q H + I+L II ++ L P + Sbjct: 205 GDSLYGDEEAWLTLEGQKHHVLCKQISLSSQDNDRLTMIIFRDAHDYLSNLTPSPYESDM 264 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 +G H P + Q R I + A S VL+ GE G GK +++ AIH S Sbjct: 265 QVRLIG-------HSPSME-QLRSTIG---KIANSYASVLITGESGSGKEVVAFAIHQSS 313 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYL 428 R A P++ +NC + L E G R + GR+ + ELA+GG+LFL++I + Sbjct: 314 PRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLDEIGDM 373 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + LQ+ LL+V+++ ITR+ + I IDV++IA T ++ +VE N+F L+Y L+ Sbjct: 374 PLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFYRLNVV 433 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-----KIDDDALARLVSCAWPGNDFEL 543 + +P LR RR I L + FS K+ DD + RL + WPGN EL Sbjct: 434 PLVLPSLRERRADIAVLA----QYFADEFSVSYQRPPQKLPDDVINRLYAWHWPGNIREL 489 Query: 544 YSVIENL-ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA----EVEKEAIIN 598 +VIE + + + I S LP +L T A D T + A + E+EAI N Sbjct: 490 RNVIEYIFVMRGEAAGINASHLPPYLLT--AADGRKTTMTAQPRQLASKGKQAEREAIEN 547 Query: 599 AAQVTGGRIQ---EMSALLGIGRTTLWRKMKQHGI 630 Q G ++ + + LGI TL+RK+K +G+ Sbjct: 548 VIQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 136/453 (30%), Positives = 211/453 (46%), Gaps = 42/453 (9%) Query: 197 ETNRHLNQ-LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 ET + L L +LE +GV DE G + +NA+ + G I + L Sbjct: 241 ETVKELKMTLETVLEVAYEGVAVLDEAGMITLVNARFCNKIGKPKDNIIGENINRFIPLS 300 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS-FILLLHP--------V 306 PL +E + V++ PI + T F++ ++ V Sbjct: 301 -------HNQMPLSVLEINAKP------CVVSTLPITKEGNTKGFVVKIYEDLDNLADIV 347 Query: 307 EQMRQL------MTSQLGKV---SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 +Q+ ++ ++L KV S+T + D + L Q RS+ VL+ GE Sbjct: 348 QQINRINMQLNYYKNELYKVNGTSYTVGSIVCRDERIATLKSQVLQVGRSNSTVLITGES 407 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCE-LYGDAALAEEF---IGGDRTDNENGRLSRLE 413 G GK L + +IHN S R P+I VNC + G+ A AE F G + G+ + E Sbjct: 408 GTGKELFAHSIHNASNRRKEPFIKVNCSAIPGELAEAELFGYEDGAFTGARKQGKPGKFE 467 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LA GT+FL++I + + LQS LL+VI+ I R+ + +DV++IA T DL +V Sbjct: 468 LADCGTIFLDEIGDMPLALQSKLLRVIQDKEIERVGGVKARKVDVRIIAATNRDLKRMVT 527 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + F LY+ ++ E+ IPPLR RR IP L + +R + R++ I + AL L Sbjct: 528 EGTFREDLYFRINVVELKIPPLRDRRKDIPLLADTFIRKYNNQLGRRVEGITEAALEALT 587 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL ++IE + ++G I + DLPE + AT+ + A +E Sbjct: 588 RYDWPGNIRELENIIERMLNYRESGLIELQDLPEEIVGRPGGMAAKATQ-----TLAVME 642 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 E I A GG + + LLGI R+ L+ K+ Sbjct: 643 METIQAALAEAGGNKSKAARLLGISRSKLYEKL 675 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 225/464 (48%), Gaps = 36/464 (7%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + T L +L++++E DG+ D + N IN + L GR + +L Sbjct: 128 IKNTKLGLTELDSIIECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKE 187 Query: 255 PAVLQQAIKQAHPLKHVEATFESQHQF---IDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 + Q A LK+ + T Q +F + +++ PI + G I+++ V + Q Sbjct: 188 GVISQSA--TLLVLKNRKTT-TIQQEFKTGVKVLVSSNPIFDKNG-KIIMVVTNVRDVTQ 243 Query: 312 L--MTSQLGKVSH-TFAHMPQ----------------DDPQTRRLIHFGRQAARSSFPVL 352 L + QL K T ++ + +D +T +I + A+ +L Sbjct: 244 LYELKEQLQKNKEITLKYVSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTIL 303 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGR 408 + GE G GK +++ IH S+R+ +I VNC + + EF G ++ N+ G+ Sbjct: 304 MLGETGAGKDQIAKYIHKVSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGK 363 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + E+A GGT+FL+++ L +++Q LL+V+++ + R+ + I IDV+V+A T DL Sbjct: 364 IGLFEMASGGTIFLDEVGELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDL 423 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 ++++ +F LYY L+ + IPPLR R+ I L+N L L K+++ DAL Sbjct: 424 EDMIKKKQFREDLYYRLNVIPLYIPPLRERKHDILPLINFFLTQLNKKYNFNKIFASDAL 483 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 + WPGN EL +++E + S++ +I+ SDLP+++ V+ ++ Sbjct: 484 NCMYEYNWPGNVRELKNIVERAVIMSEDDKIKRSDLPKNIIGSNGM-IVTLNTFEEGINL 542 Query: 589 AE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E +EK+ +I A G ++ + LGI +T RK +++ Sbjct: 543 KETLDAIEKK-LIKKAYDKYGNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with GAF sensor, Fis family n=1 Tax=Polaromonas sp. JS666 RepID=Q122Y8_POLSJ Length = 633 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 173/645 (26%), Positives = 276/645 (42%), Gaps = 55/645 (8%) Query: 4 AFNNDGRGISPLIAT----SWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQ 58 AF +DG + LI SW+RC + + V + A + ++ +L + Sbjct: 23 AFFDDGSAPAGLIDDPVLRSWQRCRGQGRGASEQVEFDPVDRLALARLLEAQRTLLEAAR 82 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 L+ ++ A+ + D L+ G + F G +E +IGT A+ Sbjct: 83 PELDALARAVSDAGYAVLLTDVQGRALAVEGCTDRRSEPLRQAFRPGVDLSEAVIGTNAM 142 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 S A + V+ + +HF + CA P+FD +GR+ G + ++ + A + LT Sbjct: 143 SSAMTEQRVVRVLGPEHFFADNQIFHCCAAPVFDPQGRVVGAVDISRDMPGLAAGAVALT 202 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AR + L ++L A L +A D+ ++++ G L N AAR L Sbjct: 203 QRCARRIERKLF-EALPAFVRLRLETQDA----SDEAWLAFNRDGGLLAANI-AARHLID 256 Query: 239 DATASQGRAITELL-----TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 QG ++L TL A QA + + Q + P+ Sbjct: 257 VPFVPQGLGFSDLFDGRFDTLAAAASQASGE------LSLRLRGGVQLRARASGVPPMAR 310 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 + T + R + G VS FA D + R + G PVL+ Sbjct: 311 SVATP-----NRSAPPRTAPRPEFGDVS--FA---ADFERALRAFNAG-------LPVLV 353 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRL 409 GE G GK + ++A+H S R GP IA+NC +A E G G T G Sbjct: 354 TGETGAGKEVAARALHEVSHRHDGPLIAINCGAIAPQLMAAELFGHVEGAFTGARRGGSA 413 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 ++E A GGTL L++I + +ELQ LL+++ G + R+ A R + +DV+ + T DL Sbjct: 414 GKIEAAQGGTLLLDEIGDMPLELQVGLLRMLDSGEVLRVGATRAVRVDVRFVCATHRDLR 473 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 LV F LYY + F++ IPPLRMR + N L +L ++ D L Sbjct: 474 ALVASGLFREDLYYRISGFQLQIPPLRMR-----SDFNAVLDALLAEQGCAPRLLDAGLR 528 Query: 530 R-LVSCAWPGNDFELYSVIENLALSSDNGRIR-VSDLPEHLFTEQATDDVSATRLST--- 584 R L S WPGN +L + + +S P+H +++ V + R T Sbjct: 529 RALKSRRWPGNVRQLRHALRLALALLEADEALTLSHFPDHEPDHESSLGVPSARPRTGAP 588 Query: 585 --SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 LS+ + +++AI A + TGG + +ALL IGR TL+RK+ + Sbjct: 589 DDGLSWRQTQQQAIDAALRQTGGNVTAAAALLNIGRATLYRKLAK 633 >UniRef50_Q4K4Y9 Sensory box-containing sigma-54 dependent transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=Q4K4Y9_PSEF5 Length = 464 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 143/453 (31%), Positives = 215/453 (47%), Gaps = 44/453 (9%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA----IK 263 LL ++ DGV D QG +N R+ L+ GR + EL+ + Q A ++ Sbjct: 18 LLNALHDGVYITDGQGQTLKVNQAYERLTGLNGAELLGRPMQELVKSGVISQSASLRVLQ 77 Query: 264 QAHP------LKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL-----HPVEQMRQL 312 P L H + S + A +++ ++ T LL ++Q++QL Sbjct: 78 DGRPVSVMQSLSHGKKLLVSATPILAADQSIRYVVSTVRDMTELLRIKRERDELQQLKQL 137 Query: 313 MTS----QLGKVSHTF-AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 TS G+ + + D + R+ RQ A VLL GE GVGK L++Q Sbjct: 138 RTSTARLHAGQRDDLLQSPLMADQEVSGRVFAQARQVADCDVKVLLQGETGVGKTLVAQF 197 Query: 368 IHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 IHN S RA P++A+NC EL+G A A F G G+ LELAH Sbjct: 198 IHNASARAREPFLALNCGALPENLIEAELFGYAPGA--FTGA----GSKGKRGLLELAHN 251 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L + +Q LL+VI++ + L +DV++I+ T DL V + +F Sbjct: 252 GTLFLDEIGDLPLAVQVKLLKVIEENRFIPVGGLELKEVDVRIISATHHDLKQRVAEGKF 311 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LYY L+ I IP LR R I L+ L +R+ +++ +AL L AWP Sbjct: 312 RADLYYRLNVVPIAIPALRERSEEIGPLLEYYLEHFNQRYQRQVQWSLEALELLGEYAWP 371 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA--TDDVSATRLSTSLSFAEVEKEA 595 GN EL +V+E L ++ I DLPE L +QA TDD +RL E++A Sbjct: 372 GNIRELINVVERLVVTCSGQVIEALDLPEDLIEQQARNTDD---SRLPLRKVLENAERQA 428 Query: 596 IINAAQVTGGRIQEMSA-LLGIGRTTLWRKMKQ 627 I A Q+ + ++A LG+ + T+ +KMK+ Sbjct: 429 IRAALQLH--KTTRLAAKALGVSQATVVQKMKR 459 >UniRef50_Q93KC9 AorR protein n=1 Tax=Eubacterium acidaminophilum RepID=Q93KC9_EUBAC Length = 518 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 103/327 (31%), Positives = 174/327 (53%), Gaps = 30/327 (9%) Query: 322 HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 + F + +DP+ I + ++ + S +L+ GE G GK + +Q+IHN S+RA P++A Sbjct: 205 YNFEKIIGEDPKFLDTIEYAKKISGSKSTILITGETGTGKEVFAQSIHNYSDRAHMPFVA 264 Query: 382 VNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVE 431 VNC EL+G A F G + +E + + A GGT+FL++I + ++ Sbjct: 265 VNCGAIPLNLIESELFGYEEGA--FTGAKKGGSE----GKFQSADGGTIFLDEIGEMPID 318 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q LL+ I++GV+TR+ R IP+DV++IA T +L VE +F + L+Y L+ + Sbjct: 319 MQVRLLRAIEEGVVTRIGGIRPIPVDVRIIAATNRELRQAVESGKFRKDLFYRLNVLPVC 378 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYSVIENL 550 + PLR RR I LV+ + L +R ++ ++ + LV+ +WPGN E+ +V+E Sbjct: 379 LLPLRERRMDIMLLVDYYMNKLSRRLGKKKIVFNETEIDTLVNYSWPGNIREVQNVVE-- 436 Query: 551 ALSSDNGRIRVSDLPEHLFTEQA---TDDVSATRLSTSLSF--AEVEKEAIINAAQVTGG 605 L + GR LP+ + Q D+ SA + + +EKE I A + G Sbjct: 437 -LVLNTGR-----LPDEIACVQPCMRNDEYSAKKSEEEKHYDLHALEKEHITRALEECGY 490 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGIDA 632 I + + LGI R TL++K++ I+ Sbjct: 491 NISKTARKLGIARNTLYKKIRDFSINC 517 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/186 (20%), Positives = 73/186 (39%), Gaps = 4/186 (2%) Query: 5 FNNDGRGISPLIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 +ND I ++ S C K+ + R+T +G + + ++ ++ Sbjct: 1 MDND---IVGMVEKSQRHCEKIGLSRDTVFSRKIIEGRELDDELEKSRELILAAIPFIDH 57 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 + ++ + + + D CIL+ GD + L G Y + IGT A+ + Sbjct: 58 LYRFVRGSDFFIILTDAQGCILNIVGDERILGDAFRFKMIPGAYMNDDCIGTNAMGIVIN 117 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 V+ + D H+ + W A P+ D G L G I L E L + +A A Sbjct: 118 ERIPVQILGDDHYIKAYHKWTCSAAPIMDPDGELIGVINLTGYTEGVHPHTLGMVVAAAF 177 Query: 184 EVGNLL 189 + +++ Sbjct: 178 SIEHII 183 >UniRef50_Q1D552 Sigma-54 dependent DNA-binding reponse regulator Nla6 n=8 Tax=Cystobacterineae RepID=Q1D552_MYXXD Length = 484 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/302 (32%), Positives = 158/302 (52%), Gaps = 6/302 (1%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 R++I + A S V + GE G GK ++S+A+HN S R P+IA+NC + Sbjct: 151 RKVIELVEKVAPSKASVSISGESGTGKEVVSRAVHNLSLRRDKPFIAINCASIPATLIES 210 Query: 395 EFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G +R T + R E+AHGGTLFL+++ + +ELQ+ LL+V+++G + RL + Sbjct: 211 ELFGHERGAFTGADQRRPGVFEMAHGGTLFLDELGEIPIELQAKLLRVLEEGKLRRLGGK 270 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 I +DV+V+ T DL ++ RF LY+ L+ F+I +PPLR RR +P LV + + Sbjct: 271 VEIEVDVRVLCATNRDLKQEIKNGRFREDLYFRLNVFQIHLPPLRERRDDVPILVQHFVD 330 Query: 512 SLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 R+ + +A+ L + WPGN EL + +E + D I LP + Sbjct: 331 KFRGDSGKRVSGVHPEAMEVLKNYDWPGNIRELRNAVERAVILCDGELITREHLPPDMAG 390 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + + RL LS VE+E I+ + Q G + +LG+ TL+ K+ ++ Sbjct: 391 K--SPERHTFRLPFGLSLDAVEREYILGSLQRNGNNKARTAEVLGVSEKTLYNKLNRYAA 448 Query: 631 DA 632 +A Sbjct: 449 EA 450 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 166/592 (28%), Positives = 268/592 (45%), Gaps = 69/592 (11%) Query: 74 ALFILDETACILSRNGDPQTLQQLSA---LGFNDGTYCAEGII-GTCALSLAAISGQAVK 129 +FI D A L N + + ++A +G N EG G+ L + +A Sbjct: 376 GIFITDGEANTLRLNQAFERITGVTAQECVGRNMKELVDEGYFSGSGTLLVLEKRERATI 435 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 T+ + K+VL +TP+FD +G + + T D+ + RE ++ Sbjct: 436 TLVTRTGKEVL----VTSTPIFDDQGNIMLVV--------TNVRDITELNELEREFKKMV 483 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 +L+A+ ES DG+ D + N +N R+L + A GR + Sbjct: 484 ---------GLRERELDAVFESSYDGLYITDGEANTLRLNEAFERILGVKAEECIGRNMR 534 Query: 250 ELL---------TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 EL+ TL A+ +Q V T +++ A++T PI + G + I Sbjct: 535 ELVAEGVYSRSGTLLALEKQ--------DQVTITLQAKTGKT-ALVTSTPIRDEHG-NII 584 Query: 301 LLLHPVEQMRQL--MTSQLG---KVSHTFAHMPQD----------DPQTRRLIHFGRQAA 345 L++ V + +L + +LG ++S F Q+ + R LI + A Sbjct: 585 LVVTNVRDISELNELQEKLGHAEELSRFFQSELQEMKLRTQCVIHSSKMRELISMVVRIA 644 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRT 402 VL+ GE GVGK L++ IH+ S R P I +NC + L E G G T Sbjct: 645 AVDSTVLIQGESGVGKELVANTIHSNSNRREQPMIKINCGAIPENLLESELFGYEPGAFT 704 Query: 403 D-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 ++ G++ E+A G LFL++I L + LQ LL+V++ I R+ + I +DV++I Sbjct: 705 GASKQGKVGMFEVADQGILFLDEIGDLPLSLQVKLLRVLQDKEILRVGGTKPIKVDVRII 764 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T +L +VE+ F + L+Y L+ IT+PPLR RR IP L N+ L + ++ Sbjct: 765 AGTNYNLKEMVEKKLFRKDLFYRLNVIPITVPPLRERREDIPILANHFLDNFNQKHGMNK 824 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP--EHLFTEQATDDVSA 579 K+ LA + WPGN EL +++E L ++S N I DL L E +D+ Sbjct: 825 KLSGSILAYFMEYDWPGNVRELENLVERLVVTSLNQTITAHDLSAWSELKPENKSDNEHG 884 Query: 580 -TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 RL +L E+ + NA V E++ LGI + T+ RK ++GI Sbjct: 885 IVRLQDALE--NTERRILENAFSVCKS-TYEVARALGISQPTVVRKAAKYGI 933 >UniRef50_C0ZD73 Putative transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZD73_BREBN Length = 469 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 8/302 (2%) Query: 336 RLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE 395 R+ ++ A + P+LL GE GVGK +++ IH +S R G +I +NC + L E Sbjct: 168 RIASLSKRFATNDSPILLLGESGVGKDVMANYIHAQSGRT-GEFIKINCGAIPEHLLESE 226 Query: 396 FIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G ++ T + LELA GT+FL++I L LQ LL V++ G I RL + Sbjct: 227 LFGYEKGAFTGASQSKEGLLELADRGTIFLDEIGDLPFPLQVKLLNVLQDGRIRRLGGKT 286 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 +++++IA T +DL +VEQ RF + L+Y L+ +TIPPLR RR IPAL+ L+ Sbjct: 287 SRQVNMRIIAATNSDLEAMVEQKRFRQDLFYRLNVLTLTIPPLRERREDIPALIFYYLKK 346 Query: 513 LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL-FTE 571 LE ++ ++I+ DAL L+ WPGN EL +V+E +NGRI LP + T+ Sbjct: 347 LEWKYQQEMRIETDALEALMDYDWPGNIRELKNVVERSFHMCENGRITFDQLPASIRNTQ 406 Query: 572 QATDDVSATRLSTSLSFAE-VEK--EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 Q + ++ LS E VE+ A I +Q+ + L + +TL RK + Sbjct: 407 QTALPLQLAKMDELLSLKEAVERFERAYIQRLLKETDTMQQCADKLQVNISTLVRKKRSL 466 Query: 629 GI 630 GI Sbjct: 467 GI 468 >UniRef50_B5YHK7 SasR n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YHK7_THEYD Length = 462 Score = 162 bits (410), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 161/301 (53%), Gaps = 20/301 (6%) Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG--- 398 ++A ++ VL+ GE G GK L+++AIH S R P+IA+NC D + E G Sbjct: 157 KKATPTNATVLIYGESGTGKELIARAIHYNSPRKDKPFIAINCAAIPDTLIESELFGYEP 216 Query: 399 GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 G T ++ +E A GTLFL++I + + QS LL+V++ + ++ ++ +DV Sbjct: 217 GAFTGANTRKIGLIESADKGTLFLDEIAEIPLSTQSKLLRVLQDKEVRKIGSKDTNKVDV 276 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA T +L+ VE+N+F LYY L + IPPLR R+ IP LV+ + K F Sbjct: 277 RIIAATNKNLSEQVEKNKFREDLYYRLKVITVEIPPLRERKEDIPDLVHFFIEKYSKEFG 336 Query: 519 TRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL--------PEHLF 569 R+ I++ AL L++ +WPGN EL SVIE + + +I +D+ P++LF Sbjct: 337 KRVNGIEEKALEALLNYSWPGNIRELESVIERAIIICEKDKITFNDIQDELRVITPKNLF 396 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 D+ +++ E+EKE I A + I + + LLG+ T W ++K+ G Sbjct: 397 DIDIPDE--------GINYEELEKELIKKALIKSNFVIAKAARLLGMSYDTFWYRLKKFG 448 Query: 630 I 630 + Sbjct: 449 L 449 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 127/449 (28%), Positives = 209/449 (46%), Gaps = 31/449 (6%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT-----LPAVLQ 259 L +L+S++ G+ + + G + F N A +V G+A L + L+ Sbjct: 133 LKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKACGTLFAGEGKQVCQALK 192 Query: 260 QAIKQAHPLKHVEATFES-QHQFIDAVITLKPIIETQGTSFILL-----LHPVEQMRQLM 313 Q + P V S Q + I P++ G L + V+Q+ Q + Sbjct: 193 QVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAFQDMTLVQQLNQAI 252 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 Q + F HM DP +R+ R A++ +L+ G G GK LL++ IH+ES Sbjct: 253 KGQ-----YHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHSESN 307 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430 R+ P++ VNC D + E G G T + + R AH GT+FL++I L + Sbjct: 308 RSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRDKPGRFSEAHSGTIFLDEIGDLPL 367 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 LQ+ LL+V++ L +R+ +DV++++ T L LV Q F L+Y L+ I Sbjct: 368 ALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNVLRI 427 Query: 491 TIPPLRMRRGSIPALVNNKLRS----LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 +PPL RRG +P L+ + +R ++K F I + A+ L++ +PGN EL ++ Sbjct: 428 DLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFP---DICETAMEILLNYHYPGNIRELENI 484 Query: 547 IENLALSSDNGRIRVSDLPEHLFT----EQATDDVS-ATRLSTSLSFAEVEKEAIINAAQ 601 IE+ + IR LP ++ E D S + + S E++ I++ + Sbjct: 485 IEHAIILCQEEVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQERQQILDVLR 544 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 Q + LLG+ RTTLWRKM++ I Sbjct: 545 ANRWHRQTTANLLGMDRTTLWRKMRKFKI 573 >UniRef50_Q24UK7 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=Q24UK7_DESHY Length = 642 Score = 162 bits (410), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 126/456 (27%), Positives = 216/456 (47%), Gaps = 52/456 (11%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP---AVLQQA 261 + + +S +G+I +E L NA AA+ L G+++ +L P A+L+ Sbjct: 202 IKTIADSTHEGMIHLNENRILVNFNANAAKFFGLHEKDVIGKSVQDLSGCPSLAALLKDF 261 Query: 262 IKQAHPLKHV--------EATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 ++ + L H + HQF +I K + + E+ R Sbjct: 262 DQKLNFLHHTPKGTILVNKVPILHNHQFRGIMINFKEANQEEW----------EKTRATG 311 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN-ES 372 T L H F + ++ + +I + A + VL+ GE G GK L+SQ+IHN Sbjct: 312 TKGL-VAKHHFRDIINNNSKMSEVITMAMRYANTDCNVLIKGETGTGKELISQSIHNGHR 370 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYL 428 +R+ P++AVNC + L E G G T ++ G+ E+AHGGTLFL++I+ + Sbjct: 371 QRSRKPFVAVNCASLDGSLLNSELFGYSEGAFTGASKGGKPGLFEIAHGGTLFLDEIDKM 430 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 ++Q+ LL+VI++ I R+ + +++ +DV++IA + DL LV + F LYY L+ Sbjct: 431 KKDVQANLLRVIQEKEIRRIGSDQVVSVDVRIIAASNEDLLDLVRKGEFREDLYYRLNVL 490 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVI 547 ++T+PPLR RRG IP LV L+ ++++ +++ L ++ C W GN +L I Sbjct: 491 KLTLPPLRERRGDIPHLVRVYLQKYTEKYNKINIELPAAVLDKISHCEWYGNIRQLNHFI 550 Query: 548 ENLALSSDNGRIRVSDLPEHLFT-----------------EQATDDVSATRLSTSLSFAE 590 E + D+G +DLPE + E+ +D R+ S E Sbjct: 551 ERCVVLCDDG----NDLPEIILMMLEEEFSTRPTLHAREEEEQDNDTINVRIR---SLEE 603 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + E + T E++ ++GI R TL + +K Sbjct: 604 MNAEIVHRVKAKTKISNGELALMMGISRPTLLKMLK 639 >UniRef50_C1ZJW6 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=2 Tax=Planctomyces RepID=C1ZJW6_PLALI Length = 662 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 156/290 (53%), Gaps = 4/290 (1%) Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR 401 R+ A + PVL+ GE G GK +++ ++H + RA P+IAVNC + L E G +R Sbjct: 360 RRLAGTDLPVLILGESGTGKEVVASSLHYQGSRADRPFIAVNCAALTETLLESELFGHER 419 Query: 402 ---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 TD R + ELA GGT+FL++I L+ Q+ LL+V++Q VITR+ + IPI+ Sbjct: 420 GSFTDAHEMRRGKFELAEGGTIFLDEIGDLSAGGQAKLLRVLEQKVITRVGGSQTIPINA 479 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE-KRF 517 +VIA T A LA V +F LY+ L+ + IPPLR R + L L + Sbjct: 480 RVIAATNARLAEAVRAKKFREDLYFRLNVVTLEIPPLRERADDVLPLAEYFLEQFAVQAR 539 Query: 518 STRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV 577 ++ + +A RL S AWPGN EL +++E +A + RI V DL L E+ + Sbjct: 540 RGKMHLSAEARRRLQSHAWPGNVRELRNLMERVAFLAPAERIEVEDLAFILSPERDSFHE 599 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + + S + ++E I A + + E + LLG+ R+ L+RKM+Q Sbjct: 600 PSLDMGLSEATNSFQQEYIRRAIKRVRNNMSEAARLLGLHRSNLYRKMRQ 649 >UniRef50_C0CTF4 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CTF4_9CLOT Length = 670 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 131/471 (27%), Positives = 221/471 (46%), Gaps = 48/471 (10%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 L + L+ D +I+ D +G + +N +A R+ L +A GR I LL P + Sbjct: 208 QLQKHQMLMNYTRDAIINVDARGMVSIMNMEARRMFHLTHSAV-GRDIRRLL--PELEFD 264 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPII---ETQGT-SFILLLHPVEQMRQLMTSQ 316 +++ P + V Q Q + + PI+ + +G F +H +++ Q + Q Sbjct: 265 ELRRT-PEQVVGQIIRIQGQLLS--VNKIPIVMGGQFEGAIYFFQSVHDIQKSEQRIRLQ 321 Query: 317 LGK----VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 L + + F + R+ R A++ +LL GE G GK L +Q+IHN S Sbjct: 322 LHQKGLVAKYHFEDILGISDSLERVKLIARSYAQADSSILLTGETGTGKELFAQSIHNSS 381 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYL 428 R GP++A+NC L+ + G + + G+ ELAHGGT+FL++I + Sbjct: 382 PRRNGPFVAINCAALPKDLLSSQLFGYEEGSFTGAAKGGKPGIFELAHGGTIFLDEIGEI 441 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 E Q LL+V+++ + RL + ++IPIDV+VI T +LA+ V++ RF L++ ++ Sbjct: 442 PEETQIQLLRVLQEKEVRRLSSDKVIPIDVRVICATNRNLALEVKERRFRMDLFFRINVL 501 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEK--RFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 ++ IPPLR R+ IP L ++ L + R + R++ +WPGN EL +V Sbjct: 502 KLEIPPLRERKEDIPLLADHFLEEYCRGGRLAEVRARMHGLYPRMMEYSWPGNIRELQAV 561 Query: 547 IENLALSSDNGRIRVSDLPEHLFT------------------------EQATDD--VSAT 580 E +A+ D G ++ H+ EQ D Sbjct: 562 TERIAILLDQG--FPMEIDAHMMMEEFGYLEGEEGGMGPEPGERPGAEEQPEPDRKTEPE 619 Query: 581 RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 ++ +E KE II A + R QE + LGI R+TLWR ++++ I+ Sbjct: 620 ESASGRPISECRKEDIIRALKNHHYRRQEAAQALGISRSTLWRLIRKYEIE 670 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 111/377 (29%), Positives = 194/377 (51%), Gaps = 13/377 (3%) Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH-TF 324 + L H F + +FI V T + T+ L L V + + +++ +S +F Sbjct: 224 YALVHANPIF-YKEEFIGVVCTEVDV--TEAKILALELEKVNDTLKYLKNEVKNLSKGSF 280 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + + +Q AR++ + + GE G GK + ++AIH+ SER G +I VNC Sbjct: 281 DKILGKSYKLEKSKAIAKQVARTNSSIFIWGESGTGKEVFARAIHDYSERK-GQFIPVNC 339 Query: 385 ELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + EF G + ++ GR+ ELA GT+FL++I L + +Q+ LL+V+ Sbjct: 340 SAIPNELFESEFFGYESGAFTGASKKGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVL 399 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ I R+ I I+ ++I+ T DL+ +V+ +F LYY L+ EI IPPLR R+ Sbjct: 400 QEKEIRRVGGDTTIKINPRIISATNKDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKE 459 Query: 501 SIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 I LV++ L + K+ + L I D + + W GN EL + IEN+ + S N +I Sbjct: 460 DIGLLVHSFLEEICKQNNKPVLTISKDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKI 519 Query: 560 RVSDLPEHLF--TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 V D+P ++ T +T++ L + + ++E + I A +++ G + + +L I Sbjct: 520 DVDDVPSYMMDSTNNSTEE-EEYPLDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIP 578 Query: 618 RTTLWRKMKQHGIDAGQ 634 RTTL+ K+ Q+ ID + Sbjct: 579 RTTLYYKIDQYKIDVSK 595 >UniRef50_Q1IUH0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IUH0_ACIBL Length = 453 Score = 162 bits (409), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 99/299 (33%), Positives = 160/299 (53%), Gaps = 7/299 (2%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR- 401 + A S+ VL+ G G GK L+++AIH S RA P+ VNC + + L E G ++ Sbjct: 157 RVAPSNANVLITGASGTGKELVARAIHEHSRRAEMPFTPVNCGSFAETLLESELFGHEKG 216 Query: 402 --TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T ++ R +E GGTLFL++I ++ Q LL+V+++ + R+ + ++IPIDV+ Sbjct: 217 AFTGADSVRKGLIESTQGGTLFLDEITETSLGFQVKLLRVLQEQQLRRIGSNKIIPIDVR 276 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 ++A T D+ L+ + +F LYY L +I IP L R+ IP+LV + LR +R Sbjct: 277 ILAATNRDVPSLIREGKFREDLYYRLAVVQIKIPMLAERQSDIPSLVTHFLRQFNERNQA 336 Query: 520 RLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA 579 R+ I+ A+ L +WPGN EL + I LA+ + GRI +D+ E + A Sbjct: 337 RVSIEQSAVELLQKRSWPGNVRELENTIYRLAIFASTGRITGADVERE--QESQKNGPKA 394 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI--DAGQFK 636 +S E+E+ I+ + G E + LGI R TL++K + GI DA +++ Sbjct: 395 EPVSAPDRLVEMERHQILRILKDVHGNKSEAARRLGIERKTLYKKAVRLGITLDASEYQ 453 >UniRef50_A0LIA2 Sigma54 specific transcriptional regulator, Fis family n=7 Tax=Proteobacteria RepID=A0LIA2_SYNFM Length = 1139 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 112/319 (35%), Positives = 166/319 (52%), Gaps = 30/319 (9%) Query: 328 PQDD-----PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 P DD P R+++ Q A + VL+ GE G GK L+++A+HN S R P + V Sbjct: 830 PHDDIVARSPAMRQVLLRVEQVAPTDSTVLITGETGTGKELIARAVHNLSARKGRPLVTV 889 Query: 383 NCELYGDAALAEEFIGGDRTDNENGRLSRL----ELAHGGTLFLEKIEYLAVELQSALLQ 438 NC + E G ++ G LSR+ E+A GGTLFL+++ L ELQ+ +L+ Sbjct: 890 NCASLPPTLMESELFGREKGAY-TGALSRMAGRFEVADGGTLFLDEVGELPPELQAKMLR 948 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V+++G RL + + + ++V+++A T DLA LV+ RF R LYY L+ F I IPPLR R Sbjct: 949 VLEEGRFERLGSTKSLHVNVRILAATNRDLAQLVQAGRFRRDLYYRLNVFPIAIPPLRER 1008 Query: 499 RGSIPALVNNKLRSLEKRFSTR----LKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 IP LV + EKR LK DAL R AWPGN EL +VIE+ + S Sbjct: 1009 PEDIPPLVWAFIHQFEKRMGKHVQRVLKRSMDALER---HAWPGNVRELRNVIEHAMIVS 1065 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA-- 612 ++V P + E ++ +V L+ E E+ I+ + G R+ Sbjct: 1066 SGSTLKV--FPPMIRAEDSSAEV--------LNLEESERRHILRVLTLAGWRVAGKGGAA 1115 Query: 613 -LLGIGRTTLWRKMKQHGI 630 +LG+ TTL +MK+ G+ Sbjct: 1116 EILGLKPTTLEARMKKLGV 1134 >UniRef50_Q97LU5 NtrC family transcriptional regulator (PAS and AAA domains) n=1 Tax=Clostridium acetobutylicum RepID=Q97LU5_CLOAB Length = 627 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 117/442 (26%), Positives = 213/442 (48%), Gaps = 30/442 (6%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL---TLPAVLQQ 260 + A+L+++ +G+I D+ + N ++ + G++I ++ + ++L+ Sbjct: 194 RFKAILDAIGEGIIVTDQFKKIITYNNSINKIFTKTGSKLLGKSIQSVIPNYKVDSILKN 253 Query: 261 AIKQAHPLKHVEATFESQHQF--------IDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 + +K+ + QF I V T + + + Q +E++ + Sbjct: 254 VEPETKIIKNFNGLIIAAKQFPVKLEDKIIGVVNTFEDVTKIQ---------TLEKIIRK 304 Query: 313 MTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + G V+ + F + D L +++ +L+ GE G GK L +Q+IHN Sbjct: 305 KIHEKGFVAKYNFDDILTQDKNMIELKKLALLYSKTDSSILIQGESGSGKELFAQSIHNS 364 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEY 427 S R GP++A+NC + L E G G T + G+ ELAH GT+FL++I Sbjct: 365 SPRKNGPFVAINCAALPEHLLESELFGYEGGSFTGAKKEGKQGLFELAHNGTIFLDEIGE 424 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 L+ LQ+ LL+V+++ I + ++IP+D+++I++T +L +E F LYY L+ Sbjct: 425 LSKPLQAQLLRVLEEKEIMHIGGDKIIPVDIRIISSTNRNLLNSIENGTFREDLYYRLNV 484 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 F +T+PPLR R I L + L + S R KI + L++ WPGN EL +V+ Sbjct: 485 FNLTLPPLRERGKDIEILAEHFLENTHNFSSNRSKILNQITPFLMAYNWPGNTRELSNVM 544 Query: 548 ENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV----EKEAIINAAQV 602 E ++L +N I S + + ++ +D ++ +L+ E+ EK I + + Sbjct: 545 ERISLFIENSMTINWSQVLYKVVHKEKIEDTLTLKVPYNLTMKEIIELTEKRVIHSLLER 604 Query: 603 TGGRIQEMSALLGIGRTTLWRK 624 ++ +L IGRTTLWRK Sbjct: 605 YDNDHNRVAEILNIGRTTLWRK 626 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 102/315 (32%), Positives = 160/315 (50%), Gaps = 19/315 (6%) Query: 269 KHVEAT----FESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTF 324 KH+ AT F+ + I V+ + I E + L EQ+ + QL K+S Sbjct: 179 KHLIATGNPIFDENGEIIRVVVNSRDISEL--LNLRKQLEDTEQLVESYRQQLLKLSQER 236 Query: 325 AHMPQ---DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIA 381 + PQ +++I + A+ VL+ GE GVGK +++ +H S RA GP+I Sbjct: 237 IRSDELIARSPQMKKVIEMVDKVAQVDSTVLIMGESGVGKGVIASRLHRLSRRAKGPFIT 296 Query: 382 VNCELYGDAALAEEFIG-------GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 +NC + L E G G R + G+ LELA+GGT+FL++I L + LQ Sbjct: 297 INCGAIPEHLLESELFGYEGGAFTGARKE---GKKGLLELANGGTVFLDEITELPLSLQV 353 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LLQVI+ + R+ + I +D++ +A T D+ +V + F LYY L+ + IPP Sbjct: 354 KLLQVIQDKKLIRVGGSKYISVDIRFVAATNKDIQRMVAEGLFREDLYYRLNVIPVIIPP 413 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 LR R+ IP L+ L L ++ K +A+ L + WPGN EL +++E L ++ Sbjct: 414 LRYRQEDIPVLLEYFLEKLNTKYEKNKKFTPEAIEILRNYNWPGNVRELENLVERLLVTK 473 Query: 555 DNGRIRVSDLPEHLF 569 + I VS LPE++F Sbjct: 474 EGNEITVSHLPEYIF 488 >UniRef50_C7PLV9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PLV9_CHIPD Length = 515 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 164/308 (53%), Gaps = 22/308 (7%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 R +I RQ A + VLL GE G GK L ++AIH S R ++ +NC AAL Sbjct: 211 RPVIQQVRQVAPTDATVLLTGETGTGKELFAEAIHLSSMRRQKAFVKINC-----AALPP 265 Query: 395 EFIGGDRTDNENG--------RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 + I + +E G R+ + E+A GGTLFL++I L +++Q+ LL+VI++ I Sbjct: 266 QLIESELFGHEKGAFTGAIHRRIGKFEMAEGGTLFLDEIGELPLDMQAKLLRVIQEKEIE 325 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ IP++V++IA T L V Q RF + LYY L+ F I +P LR RR IP L+ Sbjct: 326 RIGGTETIPVNVRIIAATNRTLEEEVRQGRFRQDLYYRLYVFPIHLPALRERREDIPLLL 385 Query: 507 NNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP 565 + R+ ++ ++ I ++ L+ WPGN E+ ++E +SSD +I ++ Sbjct: 386 QHFARNAAMKYGKPIRHIASGSVLALMDYTWPGNIREMEHMVERAVISSDEPQITIA--- 442 Query: 566 EHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI---QEMSALLGIGRTTLW 622 + + + LS L+ AE E++ II A + + GRI Q + LL I TTL Sbjct: 443 --VPGNRKALEADGNSLSPLLTLAETERQTIIRALRYSNGRIRGPQGAADLLDIKPTTLE 500 Query: 623 RKMKQHGI 630 +MK+ GI Sbjct: 501 ARMKKLGI 508 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 136/462 (29%), Positives = 209/462 (45%), Gaps = 42/462 (9%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L LL+ +D V D +G + N A R+ + A GRAIT T +++ + + + Sbjct: 10 LGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPSSLMVRRVLE 69 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQL---GKV 320 + + VE T+ I +++ P+I + Q I + V + +L L G+V Sbjct: 70 SG--QRVEWTYHQPRPGIYVLVSAAPVIRDGQVVGAIAVERDVTDLVELSNELLQARGQV 127 Query: 321 S-----------------HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 F + P RR I A + VL+ GE G GK L Sbjct: 128 DALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATVLIRGETGAGKEL 187 Query: 364 LSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGRLSRLE 413 ++AIH S R GP++ +NC EL+G A A F G N G+ +LE Sbjct: 188 FARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGA--FTGA----NPKGQRGKLE 241 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LAHGGTLFL+++ L +E Q LL+ ++ R+ I +DV+V+ T DL LV Sbjct: 242 LAHGGTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRDLEELVR 301 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLV 532 Q R+ LY+ L+ F + IPPLR RR I L+ L R+ ++ + ++ Sbjct: 302 QGRYRDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPAVIQAMM 361 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL--FTEQATDDVSATRLSTSLSFAE 590 WPGN EL S +E + + S +G + +P L A A + + Sbjct: 362 EHTWPGNVRELRSAVERMVILSPDGAVGPELIPAILGPARRGAAAAGPAAPPCAPGAAPQ 421 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 E+EAI+ A T + LLGI R TL+ +M++ G+DA Sbjct: 422 DEREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGLDA 463 >UniRef50_C6IXE0 Transcriptional regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXE0_9BACL Length = 612 Score = 161 bits (408), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 135/501 (26%), Positives = 215/501 (42%), Gaps = 59/501 (11%) Query: 185 VGNLLLTDSLLAETNRHLN---QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 VG L + D L +R +ALLE++ D V D G + N A V + Sbjct: 115 VGYLPMIDLLKIAADRQQRAEAYFDALLETVSDAVTVVDRNGTVIGWNTVAEEVYGIAKA 174 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG----- 296 GR I E A++ I + + + + +I PI+E G Sbjct: 175 DIVGRTIGEHFDPDALVVLGILDEG--RRLRGAYHRPREGTHVLINASPIVEPGGGIIGG 232 Query: 297 -------TSFILLLHPVE-QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 T + L + +L+T ++G F + ++I ++ A + Sbjct: 233 VATEQDITHLVKLNDELTVATSRLLTQRIGD-EDPFGLISGRGESMGKVIKLAKKLAETD 291 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE----FIGGDRTDN 404 VLL GE G GK L++ IH R GP+++++C A LAE + GG + Sbjct: 292 STVLLIGETGAGKEQLARVIHRAGARPEGPFLSLSCGAV-PAGLAEAELFGYQGGAFSGQ 350 Query: 405 ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 +G+ RLE A GG++FL +IE L +++Q L IK ITR+ A +P+ V++ A T Sbjct: 351 PSGQAGRLEAADGGSIFLNEIECLPLDVQEKLAHYIKHRTITRIGAAEAVPVSVRIFAGT 410 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-I 523 + DL LV + +F LYYAL+ + +PPLR RR + LV LR ++ L + Sbjct: 411 SQDLGQLVREGKFRADLYYALNVVSLKVPPLRERREDLGPLVQMYLRVYSLQYQKPLPAV 470 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS 583 + + + WPGN EL +VIE + S+N +I + LPE L QA + +A + Sbjct: 471 SPEVMLAFANYDWPGNVSELRAVIERCVILSENEQITLEHLPEVLQQRQAQLEFAAADSA 530 Query: 584 TSLSFA----------------------------------EVEKEAIINAAQVTGGRIQE 609 + E E E + A + T G Sbjct: 531 VGMPVGSGAVAGSDFGRGTKLSSVEQADRLDKMLRPRITPEEEMELMKEALERTAGNKSN 590 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + LLGI R TL++K++ + + Sbjct: 591 AAKLLGISRGTLYKKIRDYNL 611 >UniRef50_B8DFD9 Sigma-54 dependent transcriptional regulator n=19 Tax=Listeria RepID=B8DFD9_LISMH Length = 455 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 94/295 (31%), Positives = 154/295 (52%), Gaps = 3/295 (1%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 ++++ Q A VLL GE G GK +LS+ IH +SE+AAGP+I++NC A Sbjct: 158 KQIVRVCNQIAPFDSKVLLYGESGTGKEVLSRYIHEQSEQAAGPFISINCAAIPKALFES 217 Query: 395 EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G G T + + LELA GGTLFL++I + +ELQ+ +L+V++ G + RL + Sbjct: 218 ELFGHEKGSFTGADIEKPGMLELADGGTLFLDEISEMPLELQAKMLRVLETGEVRRLGST 277 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 ++I+ T +L +VE+ F R LYY ++ + IP LR R I L ++ Sbjct: 278 TETKRRFRLISATNRNLGEMVEKGTFRRDLYYRINVVPVHIPALRERPQDIIGLARQFIQ 337 Query: 512 SLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE 571 +++ ++ D L+S WPGN EL + IE L + S N ++VS+ + Sbjct: 338 KFNQKYQKDFQLSGDKTKELLSHNWPGNVRELRNQIERLVVMSGNKEVKVSETDDFALDL 397 Query: 572 QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + L +VEK I+ + + G + + +++LGI R+ L+RK+K Sbjct: 398 HFKEQTKKESLHLKDYLQDVEKHFILRVLEESDGNVTKAASVLGIHRSVLYRKLK 452 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 134/449 (29%), Positives = 207/449 (46%), Gaps = 25/449 (5%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL-----PAVL 258 Q +L+S+ DGV + D + N A + + A+ + GR E+ VL Sbjct: 79 QTETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVL 138 Query: 259 QQAIKQAHPLKHVE-ATFESQHQFIDAVITLKPIIETQGTSF-----ILLLHPVEQMRQL 312 + ++ P+ + A + + I ++ + G + L VE +R+ Sbjct: 139 KFTMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHTIGGVETFRDLSLVETLRKE 198 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + Q + F + P L + ARS VL+ GE G GK LLS+A+H+ S Sbjct: 199 IDRQ-----YRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLS 253 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 RAAGP++A+NC D L E G G TD R R A GGTLFL++I ++ Sbjct: 254 SRAAGPFVAINCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVS 313 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 LQ LL+V+++ L + R + +V+++A + DLA LV + F + LYY ++ + Sbjct: 314 PALQVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVK 373 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEK-RFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 + +P L R+ IP L + + L K R L + +ALA + WPGN EL +VIE Sbjct: 374 LELPTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIE 433 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 + G I+ + LPE+L S LS + E AI +A R Sbjct: 434 YAFILCRGGLIQPAFLPEYLHAHACVLPDSG-----GLSLRDNEARAIRDALDRNQWRRM 488 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + LGI + TL RKMK+ I A +R Sbjct: 489 ATARELGIDKNTLRRKMKRLNIRADDPRR 517 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 123/456 (26%), Positives = 208/456 (45%), Gaps = 35/456 (7%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 + ++++ D V D + ++ A ++ ++ G+ IT + + ++ Sbjct: 17 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDL--EILQSL 74 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-----------ETQGTSFILLLHPVEQMRQLM- 313 H K + A F + +I P+ ET T+ + L + M M Sbjct: 75 HDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMH 134 Query: 314 -----TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++ S F M P +R I R+ VL+ GE GVGK + ++AI Sbjct: 135 RLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAI 194 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEK 424 H SE A P+I++NC +A E G +R N G+ ++ELA GGTLFL++ Sbjct: 195 HEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDE 254 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +++Q LL+V+++ R+ + I ID ++IA T DL + + F LYY Sbjct: 255 IGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYR 314 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L+ + IPPLR RR I L + L ++ ++ + + L+ WPGN EL Sbjct: 315 LNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIREL 374 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA---------TRLSTSLSFAEVEKE 594 +V+E L + + +G I+ LP H T + D+ +A T LS E EK+ Sbjct: 375 RNVVERLVVFATDGIIKQEYLPFH--TTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKK 432 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 433 VIERALRILNGNKLECAKQLGVTRATLYNRLKKLGL 468 >UniRef50_B8DJ70 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Desulfovibrio RepID=B8DJ70_DESVM Length = 601 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 134/240 (55%), Gaps = 5/240 (2%) Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 D P RR + A + VLL GE G GK L++QAIH+ S+RAA P + VNC Sbjct: 251 DSPPLRRALEQVDMVAPTDATVLLLGESGTGKELVAQAIHDRSQRAAAPLVRVNCSAIPR 310 Query: 390 AALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 EF G G T R+ R +LA GGTLFL+++ + +ELQ LL+V+++GV Sbjct: 311 ELFESEFFGHVKGAFTGALRDRVGRFQLADGGTLFLDEVGEIPLELQGKLLRVLQEGVFE 370 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ R +DV++IA T DL VE RF + L++ L F + +PPLR RR IP L Sbjct: 371 RVGEERSRSVDVRIIAATNRDLRADVEHGRFRQDLFFRLSVFPVALPPLRARRDDIPLLA 430 Query: 507 NNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP 565 + +R+ +R + +I +A L S WPGN EL +VIE + ++ GR+ V DLP Sbjct: 431 RHFVRASCRRLNLPEPRIAHRQMAELQSYPWPGNVRELQNVIERGVIMAEGGRL-VLDLP 489 >UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 Tax=Firmicutes RepID=B7R881_9THEO Length = 478 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 135/470 (28%), Positives = 219/470 (46%), Gaps = 52/470 (11%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L LLE++D GV D+ G + N ++++ + + G+ + L P++ + Sbjct: 17 LEILLENIDWGVQITDKDGYTIYYNKASSQIDGIPIDEAIGKHV--LAMFPSLSNRESTI 74 Query: 265 AHPLKHVEATFESQHQFIDA--------VITLKPIIETQGTSFILLLHPVEQMRQLMTSQ 316 L+ E + + + ITL +I+ + I + + +++ LMT Sbjct: 75 LKVLRTGEPVVGHEQEITNCYGQKVSLFTITLPIVIDGEICGAIDISKNLSEIKNLMTKV 134 Query: 317 LG------------------KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + +TF + + L ++ A+S+ PV + GE G Sbjct: 135 IDLREEVRNNRKKSAVKENEEAYYTFDDIIGESKVITELKCKAQKIAKSNSPVFVYGETG 194 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF--------IGGDRTDNENGRLS 410 GK LL QAIHN S R GP+IA NC AAL E + G T EN R Sbjct: 195 TGKELLVQAIHNASPRKNGPFIAQNC-----AALPENLMESILFGTVKGSFTGAEN-RPG 248 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 +ELA GGTLFL++I L+++LQ+ LL+ +++G I R+ ++ +DV+VIA + Sbjct: 249 LVELADGGTLFLDEITSLSLDLQAKLLRFLQEGYIRRIGDSKVRKVDVRVIAASNISPYE 308 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALA 529 +E+ L+Y L + +PPLR R+ IP LV + ++ + +K I ++ Sbjct: 309 ALEKKILRPDLFYRLSTIVLYVPPLRERKSDIPLLVKHFIKEFNWQLGKDIKGISEEVER 368 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF--------TEQATDDVSATR 581 L+S +WPGN EL VIE A ++ I++ DLP+H+ E A D + Sbjct: 369 ALMSLSWPGNVRELKGVIEYAANFCESEIIQLHDLPDHILRNAFIEGEKEIAVDTIGIEG 428 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 S A+VE E I + T G I + +LGI R TL K+K I+ Sbjct: 429 DLRSF-LAKVEYELITKTLKKTNGNISRAAEILGIPRQTLQYKIKMLKIN 477 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 205/460 (44%), Gaps = 43/460 (9%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 N ++++ D V DE+ ++ A ++ + G+ IT + + ++ Sbjct: 101 NTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDL--EILQSL 158 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-----------ETQGTSFILLLHPVEQMRQLM- 313 H K + A F + +I P+ ET T+ + L + M M Sbjct: 159 HDGKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMH 218 Query: 314 -----TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++ S F M P +R I R+ VL+ GE GVGK + ++AI Sbjct: 219 RLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAI 278 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEK 424 H SE A P+I++NC +A E G +R N G+ ++ELA GGTLFL++ Sbjct: 279 HEASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDE 338 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +++Q LL+V+++ R+ + I ID ++IA T DL + + F LYY Sbjct: 339 IGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYR 398 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L+ + IPPLR RR I L L ++ ++ + + L+ WPGN EL Sbjct: 399 LNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIREL 458 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA-------------E 590 +V+E L + + +G I+ LP H T+D S SL + E Sbjct: 459 RNVVERLVVFATDGIIKQEYLPFH------TNDTLENETSHSLLLSNNNTILSLQEEMDE 512 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EK+ I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 513 HEKKIIERALRILDGNKLECAKQLGVTRATLYNRLKRLGL 552 >UniRef50_B5YL21 Acetoacetate metabolism regulatory protein AtoC n=3 Tax=Bacteria RepID=B5YL21_THEYD Length = 446 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 101/318 (31%), Positives = 166/318 (52%), Gaps = 8/318 (2%) Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 +L K+ F + + + + + A S+ VL+ GE G GK L+++AIH S R Sbjct: 125 KLEKIETPFPEIIGKSKTIQEIFYIMQMVAESNANVLITGESGTGKELVARAIHKNSLRK 184 Query: 376 AGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 + P+I V+C + L E G ++ T + +ELA+ GT+FL++I L + L Sbjct: 185 SKPFIIVDCTTIPENLLESELFGHEKGAFTGATERKTGLIELANEGTVFLDEIGELPMLL 244 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+ +++ I R+ + + I +DV+VI+ T DL +++ F LY+ L+ I + Sbjct: 245 QKKLLRFLQEKEIQRIGSTQRIKVDVRVISATNKDLEKAIKEGSFREDLYWRLNVVRINL 304 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR R+ IP LVN+ L K + + +++ + + L++ WPGN EL +VIE Sbjct: 305 PPLRERKEDIPLLVNHFLNKFSKENNKPIPQLEPEVMNALINYYWPGNIRELANVIERAV 364 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + S +G I + LP + Q + + +T + EVEK I+ A TG + + Sbjct: 365 VLSPSGLISIKHLPRRI---QENTGWTIIKENT-FNLLEVEKALILKALNSTGWNQTKAA 420 Query: 612 ALLGIGRTTLWRKMKQHG 629 +LGI R L KMK HG Sbjct: 421 EILGISRKQLRTKMKHHG 438 >UniRef50_Q2LUG3 Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUG3_SYNAS Length = 535 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 100/300 (33%), Positives = 163/300 (54%), Gaps = 7/300 (2%) Query: 338 IHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI 397 IH RQ A S VL GE G GK + ++ +H ES+R P++ VNC + E Sbjct: 230 IHKIRQVAPSKTTVLFAGETGTGKGIFARFLHRESDRRDRPFVNVNCASLPANLIESELF 289 Query: 398 G---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 G G T + ++ R ELA+ GT+FL++I + +ELQ+ LL+VI++G R+ + I Sbjct: 290 GREKGAYTGSTARQIGRFELANNGTIFLDEIGEVPMELQAKLLKVIEEGEFERIGSPHPI 349 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 +DV++IA T DL +++ RF + LY+ L+ F I IPPLR R+G IP LV + Sbjct: 350 KVDVRIIAATNRDLQEEIKKGRFRQDLYFRLNIFPINIPPLRDRKGDIPLLVKAFVAKFS 409 Query: 515 KRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573 K + +K I + L + AWPGN EL +V+E + S+ +++++ + + + + Sbjct: 410 KSHNRDIKRIPAKIMESLKNYAWPGNVRELINVMERAVIVSEGSELQLAEKIDAIPLDSS 469 Query: 574 TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ---EMSALLGIGRTTLWRKMKQHGI 630 + + + A+ E+E I+ A Q TG RI+ + +L + TL +MK+ GI Sbjct: 470 IRGDESFSTGSGETLADAEREHILKALQQTGWRIEGPRGAAQILDLQPNTLRARMKKLGI 529 >UniRef50_B5YH04 Transcriptional regulator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YH04_THEYD Length = 511 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 90/262 (34%), Positives = 151/262 (57%), Gaps = 13/262 (4%) Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 ++ +QL K + F ++ P + ++ + A + VLL GE G GK L+++ IH + Sbjct: 179 ILRAQL-KDRYNFPNLVGQSPSFQAVLKTVMKVASTDATVLLFGESGTGKELIAKTIHFQ 237 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENG-------RLSRLELAHGGTLFLEK 424 S+RA GP++A+NC AA+ E + + +E G R+ + E A+GGT+FL++ Sbjct: 238 SKRAKGPFVAINC-----AAIPENLLEAELFGSEKGAFTGAVKRIGKFEQANGGTIFLDE 292 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L + LQ LL+V+++ + L + + I +DV++I+ T DL+ + + F L++ Sbjct: 293 IAELPLSLQPKLLRVLQERTVEPLGSSKTIRVDVRLISATNKDLSEEIRKGNFREDLFWR 352 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ I IPPLR R+ IP LV L+S + + ID++AL LVS WPGN EL Sbjct: 353 LNVIPIYIPPLRERKEDIPLLVEYYLKSFCNIYRKSVSIDEEALKVLVSYDWPGNVRELA 412 Query: 545 SVIENLALSSDNGRIRVSDLPE 566 + IE L + +++ +I+V DLP+ Sbjct: 413 NTIERLVVMTESSKIKVYDLPD 434 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 153/287 (53%), Gaps = 10/287 (3%) Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NEN 406 VL+ GE G GK L + AIHN S R+ G ++ VNC + L EF G D + Sbjct: 401 VLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLLESEFFGYDEGAFTGAKQR 460 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G++ + +LA+GGTLFL++I ++V LQ+ LL+V+++ R+ I +DV++IA T Sbjct: 461 GKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRVGGNSRIKVDVRIIAATNR 520 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDD 525 DL +V++ F LYY L+ + IPPLR R + L + + L T + I Sbjct: 521 DLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQLMIELNSMLGTSITGISP 580 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 A L+ WPGN EL +++E +++G I+V DLP++L D ++ + + Sbjct: 581 KAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVEDLPDYLI-----DQLTIPKKEKN 635 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + E EAI A G + + LLGI R+ L+ K+K++ + A Sbjct: 636 GLAEDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKKYELSA 682 >UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteobacteria RepID=Q4ZVN8_PSEU2 Length = 617 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 156/630 (24%), Positives = 270/630 (42%), Gaps = 40/630 (6%) Query: 15 LIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAML-TLGQAALEDAWEYMAPRE 72 +I SW RC + +T Q G + + R ++ T Q L ++ Sbjct: 13 IIQDSWTRCRDFGLSHQTRPSFGQLPGTEVSRLLERHHGLVQTTHQEVLPVYENILSNSS 72 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 C + + D +L G + ++ A GF G E GT A+ A +A+ Sbjct: 73 CLILLADRQGQLLKSWGAQRFVESSQAQGFMPGASWNERGTGTNAIGTALACEEAIHIEP 132 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 D+HF + A+P+FD+ R+ + ++ + L + +++ V N L+ D Sbjct: 133 DEHFLKANRFMTGSASPIFDADRRIIAVLDVSSDSFLPPSHTLGMVKMMSQSVENRLILD 192 Query: 193 SLLAETNRHLNQL-NALLESMDD---GVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 + H + N L ++D G++ +DE G + N +A +L TA G +I Sbjct: 193 QF---RDSHFQLIFNTGLNNLDSQWAGLLIFDESGQILCANRRADTLL---GTAPAGASI 246 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 L P + + +A P + A ++ Q + T KP L LH V+ Sbjct: 247 ETLFKCPILQLLSETEARPFA-LHAFGNNRFQCLLKRPTRKP----------LKLHCVQA 295 Query: 309 MRQLMTSQ---LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + + L +S A + + Q +RL+ P+L+ GE GVGK + Sbjct: 296 AQVPAAPRNLDLQAISLGDAKVEKAVRQAQRLLE-------KDIPLLIHGETGVGKEVFV 348 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLF 421 +A+H S RA+ P IAVNC + E G +R N+ G + + A GTLF Sbjct: 349 KALHQASARASQPLIAVNCAAIPADLVEAELFGYERGAFTGANQKGSIGLIRKADKGTLF 408 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L+++ + + +Q+ LL+V+++ + L + L P+D+++I+ T L V+ F + L Sbjct: 409 LDEVGDMPMPVQARLLRVLQERCVQPLGSSELYPVDIRLISATNRGLRDQVQAGLFRQDL 468 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY + I +PPLR R AL+ ++ + R + L WPGN Sbjct: 469 YYRISGLSIELPPLR-ERTDKHALI-QRIWERHRDAHQRAGFSREVLELFEHHPWPGNLR 526 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE-KEAIINAA 600 +L SVI+ +D I LPE + D+ L T S E + Sbjct: 527 QLNSVIQVALALADEQPIGTDHLPEDFLLDAHADEECRVPLRTQESATRFHSSEDLGQLF 586 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 Q GG + +++ LG+ R TL++++++ I Sbjct: 587 QAAGGNVSQLAKRLGVSRNTLYKRLREQRI 616 >UniRef50_A9A0C3 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A9A0C3_DESOH Length = 481 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 105/309 (33%), Positives = 163/309 (52%), Gaps = 20/309 (6%) Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD 403 S+ P+L+ GE GVGK L++AIH+ES R+AGP+ AVN + L E G G T Sbjct: 164 SNAPLLVLGETGVGKEHLARAIHSESPRSAGPFTAVNAAALQEQLLESELFGHEEGAFTG 223 Query: 404 NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 R E+AHGGT+FL++I + + LQ+ LL+V++ I + + R +D++VIA Sbjct: 224 AIRSRRGAFEMAHGGTIFLDEIGEMPLHLQAKLLRVLQDYEIRPVGSERSTWVDIRVIAA 283 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T DLA+ VE+ F + L+Y L +TIPPL R+ IP +V+ + + + ++ Sbjct: 284 TNQDLALAVEKQTFRKDLFYRLGVITLTIPPLSDRKEDIPGMVHRFIEHYQLKIGKEIRG 343 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT---DDVSA 579 + + A+A L WPGN EL +VIE L I + DLP ++F A D ++ Sbjct: 344 VTEAAMAALCQYEWPGNVRELMNVIERAILLCPQEIIGIEDLP-YIFNSPAALSKDAMTQ 402 Query: 580 TRLSTSL----SFAEVEKEAIINAAQV--------TGGRIQEMSALLGIGRTTLWRKMKQ 627 L + + +V +E + Q T GR+ E + + GI L+ KM++ Sbjct: 403 GALDPAAWKGKTLPQVRQEVMDRVEQAYLQMVLRETRGRVGEAARMAGIHTRALYNKMQR 462 Query: 628 HGIDAGQFK 636 GID +FK Sbjct: 463 LGIDKNRFK 471 >UniRef50_A8MEE7 Putative sigma54 specific transcriptional regulator n=2 Tax=Clostridiaceae RepID=A8MEE7_ALKOO Length = 622 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 112/443 (25%), Positives = 209/443 (47%), Gaps = 42/443 (9%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L +L+ + D VI + +G ++ N +A +L+ D G ++E+L Sbjct: 199 LKTILDEVHDAVIVMNYEGKVRLYNERAMELLKKDREEIIGGNLSEVLP----------- 247 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL-------------LHPVEQMRQ 311 L ++ FE + + ++T+K I T TS +++ + ++ + + Sbjct: 248 --ELNFIKDAFERKIDISNKIMTIKNITITVNTSILVMDGKTEGILCTFQDISNLQSLEK 305 Query: 312 LMTSQLGK----VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + +L K +TF + ++ ++ +S V++ GE G GK + +Q+ Sbjct: 306 KIRHELNKKGLIAKYTFDDVVGFSHIMEEVVGKAKKIGQSDNTVIIYGESGTGKEIFAQS 365 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLE 423 IHN S+R+ P++A+NC + L E G + + G+ E+AHGGT+FL+ Sbjct: 366 IHNISKRSKEPFVAINCAAISENLLESELFGYEEGSFTGARKGGKPGLFEIAHGGTIFLD 425 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I ++ LQ LL+V+++ R+ + +IP+++++IA T +L +VE+ RF + L+Y Sbjct: 426 EINSISYSLQGKLLRVLQEKETMRIGSDYVIPLNIRIIAATNEELKTMVEEGRFRKDLFY 485 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L+ E+ IPPLR R+ I L + + K S ++ +L++ WPGN EL Sbjct: 486 RLNILELHIPPLRERKEDILPLFKYFMGDIAKDLS--YEVPSAIEEKLLAYRWPGNAREL 543 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 ++ E + + I + H +D L + E E +I Sbjct: 544 RNIAERYIIFKE---IDIDSKEIHKNPSNIENDSICINLREINRYVE---EKVIEMLVNQ 597 Query: 604 GGRIQEMSALLGIGRTTLWRKMK 626 G E++ +LGI RT LW+K+K Sbjct: 598 GMTKTEIANILGISRTALWKKIK 620 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 186/386 (48%), Gaps = 34/386 (8%) Query: 271 VEATFESQHQFIDAVITLKPIIETQGTSFIL--LLHPVEQMRQLMTSQLGKVSHTFAHMP 328 VEA E FI +L+ I F++ ++ E+ + + K++ T + Sbjct: 93 VEAMKEGASDFIMKPFSLEDI------EFVVKNVMATYEEKEFRESKPVEKMTFTDREII 146 Query: 329 QDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYG 388 +D + ++ F + A+S VL+ GE G GK L ++ ++ S R P++A+NC Sbjct: 147 TEDEKILGILEFLKTVAQSKSSVLIQGESGTGKELFARYLYLHSSRRHMPFVAINCAAIP 206 Query: 389 DAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 D L E G G T ++ + ELA+GGTL L+++ + LQ+ LL+VI++ I Sbjct: 207 DNLLESEMFGFEKGAFTGAIQRKVGKFELANGGTLLLDEVTEMTPHLQAKLLRVIQEKEI 266 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 RL + +P+DV++IATT AD+ +E+ F LYY L+ + IPPLR R+G + L Sbjct: 267 DRLGGKMPLPVDVRIIATTNADVRKCIEEKTFREDLYYRLNVIPLKIPPLRERKGDVELL 326 Query: 506 VNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 + L+ L + + L RL + WPGN EL +VIE L + L Sbjct: 327 GSYFLKKYSNLNEKPLPVFANGTLKRLNAYDWPGNVRELENVIERAVLVCGGNVV----L 382 Query: 565 PEHLF------------------TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 PEHL+ E+ + D+S LS ++ E+EKE I + G Sbjct: 383 PEHLYLEDQGSVSPAAEEKTSCSLEEVSTDISGIDLSRGMTIWEMEKELIFSTLDKVKGN 442 Query: 607 IQEMSALLGIGRTTLWRKMKQHGIDA 632 S +LGI T+ K++++ + A Sbjct: 443 KTRASEILGISVRTMRNKLQEYQMKA 468 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 176/337 (52%), Gaps = 21/337 (6%) Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 VE RQ + + +TF M + +++ ++ A S VL+ GE G GK L + Sbjct: 135 VEFYRQEL-YKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFA 193 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSR-LELAHGGTLF 421 QAIHN S R+ P++ +NC + L E G G T + G ELA GGT+F Sbjct: 194 QAIHNASYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIF 253 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L + +QS LL V+++ I R+ R + +D +VIA T +L +V++ F L Sbjct: 254 LDEIGELPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDL 313 Query: 482 YYALHAFEITIPPLRMRRGSIPALV-------NNKLRSLEKRFSTRLKIDDDALARLVSC 534 YY L+ + IP LR R+ IP LV NNKL+ +RF+ ++A+ L Sbjct: 314 YYRLNVISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFT------EEAMLVLSKH 367 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 WPGN EL + +E + + SD+ I V+ LP + + + + + RL+ + EK Sbjct: 368 YWPGNIRELQNTLERVFILSDDNIISVNHLPFSIKMRKG-NIIQSKRLTLDEMIDQTEKR 426 Query: 595 AIINA-AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I++ + V RI + LLGI ++L+RKMK+HGI Sbjct: 427 IILDTLSNVKDDRIA-AAELLGIHLSSLYRKMKKHGI 462 >UniRef50_B8FDA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FDA2_DESAA Length = 561 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 143/499 (28%), Positives = 220/499 (44%), Gaps = 64/499 (12%) Query: 172 AADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 A+ P L +E G L L + AE L + L S+D ++ D+ G L+ IN Sbjct: 78 ASVFPFLLNDGQE-GFLFLPE---AEDILKLVDFDTFLNSIDAAIVITDQNGMLEHINDS 133 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLK- 289 +R+L + GR + E + Q+ + + LK + A S + A +T+ Sbjct: 134 LSRLLGVGVREWVGRNVQECID-----QKVLTDSVSLKVLRAKKPISMNVSYGAGVTIHY 188 Query: 290 ---PIIETQG------------TSFILL---LHPVEQMRQLMTSQLGKVSHTFA--HMPQ 329 PI++ G T I L L E ++ +L + + Sbjct: 189 KSVPIMDGHGEVRKVISTGRDVTRLINLEKDLSSSETLKDQYYQRLNTLEVLLGGERIVY 248 Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 R+++ +A + PV L GE GVGK + ++ IH R+ GP++ VNC Sbjct: 249 SSEPMRKVVQVAIKAGKFDTPVFLWGESGVGKEMAARLIHQSGIRSPGPFVGVNCSAVPS 308 Query: 390 AALAEEFIG-------GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQ 442 L EF G G R + G A GGTLFL++I L++ +QS LL+VI++ Sbjct: 309 ELLESEFFGYADGAFTGARKGGQKGLFDE---AEGGTLFLDEITELSLTMQSKLLRVIQE 365 Query: 443 GVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSI 502 R+ R+ I D ++IA+T L E + F R L+Y L I IPPLR RR I Sbjct: 366 REFMRVGGRKRIRTDARIIASTNLSWEELTEGSGFRRDLFYRLSVIPIQIPPLRDRRDDI 425 Query: 503 PALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGR---- 558 L+ L L +++ T +KI L RL + WPGN EL +VIE L + + Sbjct: 426 LPLIRFFLTMLNQKYKTNIKIAHSLLPRLYNYDWPGNVRELKNVIERLIVVAGEDEVGEE 485 Query: 559 ----------IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 ++ SDL E DVS RL E ++ + A GG I+ Sbjct: 486 EFELLNQLDVVKPSDLKE---------DVSVNRLMPLQEAREKLEQILFKRAYQEGGSIE 536 Query: 609 EMSALLGIGRTTLWRKMKQ 627 + + LL I +T++RK+K+ Sbjct: 537 KAAELLQINPSTIYRKIKK 555 >UniRef50_B5YJY4 Response regulator HsfA n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJY4_THEYD Length = 421 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 102/294 (34%), Positives = 157/294 (53%), Gaps = 7/294 (2%) Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR 401 R+AA + VL+ GE G GK L+++AIHN SER P+I +NC D L E G ++ Sbjct: 128 RKAALTDSNVLITGESGTGKELVARAIHNLSERKENPFIVINCTAIPDTLLESELFGFEK 187 Query: 402 ---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T + +E A GTLF ++I ++ Q+ +L+VI++G R+ + +DV Sbjct: 188 GAFTGANYTKKGLIEWADRGTLFFDEIGDVSPLFQTKILRVIQEGEFIRIGGNHPVKVDV 247 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE-KRF 517 + IA T DL+ ++ F L+Y L+ I IPPLR R+ IP+L ++ KR Sbjct: 248 RFIAATNKDLSKACKEGVFREDLFYRLNVIHIEIPPLRSRKEDIPSLTQFFIKKHSAKRK 307 Query: 518 STRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 +K I ++AL L+S ++PGN EL ++IE +++ I + DLP +L Q + Sbjct: 308 DINIKGITEEALDALMSYSFPGNVRELENIIERAIAFTNSVEITIKDLPAYLLKTQHSKK 367 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 L ++ EKE I +A Q + G I + + LLGI R L RK+KQ I Sbjct: 368 TPHGNLREAVD--NFEKELIWSALQKSRGNISKAAELLGIHRQQLQRKLKQFKI 419 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 114/395 (28%), Positives = 187/395 (47%), Gaps = 28/395 (7%) Query: 186 GNLLLT----DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 GNLL++ L E + ++L A+L S+ + + D G +++ N RV + Sbjct: 101 GNLLMSILQAKEELLEVKKLKSELWAILNSVQEAIEVADNSGLIKYTNPAFTRVTGIPEA 160 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFI 300 G+ I E A+ Q +KQ + + S ++ + PI +E + + Sbjct: 161 QRVGKNIFEASPHGALAQALVKQKPVVGYRSKVGGSG---VEVISNAAPILVEGEVEGAV 217 Query: 301 LLLHPVEQMRQLM----------------TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 ++ P+ + +LM Q+ +TF + I ++A Sbjct: 218 VVFQPITDILKLMDELQKSTTIIENLYAKIDQITGSKYTFDDLTGSSKVFAATIDMAKKA 277 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR--- 401 A+S PVLL GE G GK L + AIH S+R P+I + C + L E G ++ Sbjct: 278 AKSDSPVLLTGESGTGKELYAHAIHQASQRRGKPFIKIGCASVPEELLESELFGHEKGAF 337 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 T +L ++ELA+GGTLFL++I + LQ L+++++ R+ I DV+VI Sbjct: 338 TGAVKTKLGKVELANGGTLFLDEIGEMNPYLQGKLMRLLQDQEFERVGGSETIRSDVRVI 397 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 T DL LV + RF +LY+ L+ E+ +PPLR RR IP LV + + L ++ ++ Sbjct: 398 TATNIDLKSLVRKGRFREELYFLLNVIELNLPPLRQRREDIPVLVEHFIGKLNRKLGKKV 457 Query: 522 K-IDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 + + DAL L WPGN EL +VIE +S + Sbjct: 458 RGVAPDALQLLSGYDWPGNIRELENVIERAMVSVE 492 >UniRef50_C0QL73 Sigma-54 dependent two component DNA-binding response regulator (Fis family protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QL73_DESAH Length = 482 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/344 (32%), Positives = 172/344 (50%), Gaps = 28/344 (8%) Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 Q G++ + + + + + +Q + +L+ GE GVGK LS+AIH ES R+ Sbjct: 143 QQGRIKPKLSDFFSNSKEMQLFLDEVQQIVTTDATLLILGETGVGKEHLSKAIHGESHRS 202 Query: 376 AGPYIAVNCELYGDAALAEEFIGGDRTDNENG--------RLSRLELAHGGTLFLEKIEY 427 GP+IA+N AA+ E+ I + +E G R ELAHGGT+FL++I Sbjct: 203 QGPFIAINT-----AAIPEQLIESELFGHEQGAFTGAVRSRRGAFELAHGGTIFLDEIGE 257 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + + LQS LL+V++ T + I +DV+VIA T DL M + + F + LYY L Sbjct: 258 MPMPLQSKLLRVLQDFEFTPVGGEVPIWVDVRVIAATNKDLEMEIAKGNFRQDLYYRLGV 317 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSV 546 +T+PPLR R+ IPA+ N+ L K+ +K AL + + +WPGN EL +V Sbjct: 318 MTMTLPPLRNRQEDIPAMANHFLSVCNKKIGREIKQFSGVALEAICNYSWPGNIRELINV 377 Query: 547 IENLALSSDNGRIRVSDLP---EHLFTEQAT------DDVSATRLSTSLSFAE-----VE 592 IE L + I ++DLP + F+E + D S T + E VE Sbjct: 378 IERAVLLCKSEIISLNDLPSTFQESFSEMPSLPNLQNIDTSTWTGKTLVQVKEEVLNRVE 437 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 K I + T G++ + + GI L+ KMK+ G+D FK Sbjct: 438 KRYIEMVLKKTAGKVGAAARIAGIHPRGLYGKMKKLGLDKANFK 481 >UniRef50_A9GY33 Sigma-54 dependent transcriptional regulator n=2 Tax=Myxococcales RepID=A9GY33_SORC5 Length = 523 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/305 (35%), Positives = 155/305 (50%), Gaps = 20/305 (6%) Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---G 399 + A + PVL+ GE G GK L ++AIH S RA GP+IA NC ++ + LA E G G Sbjct: 205 RVAATDVPVLIVGETGTGKELAARAIHEHSPRARGPFIAENCSVFAEGVLASELFGHEAG 264 Query: 400 DRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T R E AHGGTLFL++I L+ +Q++LL+V++ G + R+ I +DV+ Sbjct: 265 AFTGAAGRRRGVFEQAHGGTLFLDEIGELSPRVQASLLRVLQDGTLRRVGGEAKIELDVR 324 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 V+A T DLA +VE+ F LYY L I +PPLR R G I LV L ++ R Sbjct: 325 VLAATHRDLAAMVEEGTFREDLYYRLRGAIIEVPPLRARGGDIEVLVGAFLDEVQSRRKG 384 Query: 520 R-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 R L++ +AL RL AWPGN EL + ++ + ++ + V DL + + A Sbjct: 385 RGLEVTREALRRLYQHAWPGNVRELRAEVQRWGVFCEHT-VDVRDLAPEIASPAARPASG 443 Query: 579 A----TRLSTS-----------LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 R + S + A E+ AI A +V G + + L I R TL R Sbjct: 444 GAGGIARATASEAGGEEVAPLAETVASAERAAIGRALEVHEGNLSRAARALAIDRNTLKR 503 Query: 624 KMKQH 628 KM + Sbjct: 504 KMAAY 508 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 160 bits (405), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/453 (26%), Positives = 206/453 (45%), Gaps = 35/453 (7%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 + ++++ D V D + ++ A ++ ++ G+ IT + + ++ Sbjct: 101 DTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFDYKDL--EILQSL 158 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-----------ETQGTSFILLLHPVEQMRQLM- 313 H K + A F + +I P+ ET T+ + L + M M Sbjct: 159 HDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNMSHEMH 218 Query: 314 -----TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++ S F M P +R I R+ VL+ GE GVGK + ++AI Sbjct: 219 RLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEVFAKAI 278 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEK 424 H SE A P+I++NC +A E G +R N G+ ++ELA GGTLFL++ Sbjct: 279 HEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGTLFLDE 338 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +++Q LL+V+++ R+ + I ID ++IA T DL + + F LYY Sbjct: 339 IGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFREDLYYR 398 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L+ + IPPLR RR I L + L ++ ++ + + L+ WPGN EL Sbjct: 399 LNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHELLHYNWPGNIREL 458 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA---------TRLSTSLSFAEVEKE 594 +V+E L + + +G I+ LP H T + D+ +A T LS E EK+ Sbjct: 459 RNVVERLVVFATDGIIKQEYLPFH--TTETLDNHTAHSLLLSNNNTILSLQEEMDEHEKK 516 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 I A ++ G E + LG+ R TL+ ++K+ Sbjct: 517 VIERALRILNGNKLECAKQLGVTRATLYNRLKK 549 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 95/303 (31%), Positives = 154/303 (50%), Gaps = 8/303 (2%) Query: 333 QTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL 392 Q RR+ H +AA+S PV + GE G GK L+++AIH+ R+ PY+ NC +A L Sbjct: 171 QMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAIHDLGPRSDQPYVQFNCAALNEALL 230 Query: 393 AEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G G T R R E AHGG +FL++I L + +Q LL+V++ R+ Sbjct: 231 ESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEIGDLPMPVQVKLLRVLETKTFERVG 290 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 R + +DV++I T L L+ Q +F L+Y ++ + +P LR R+ IP L + Sbjct: 291 DNRQLSVDVRIITATNKVLPELISQGQFREDLFYRINVIPVHLPSLRERKEDIPLLADYF 350 Query: 510 LRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL 568 ++ L + +K + L + +WPGN EL S +E + +D+G I LP ++ Sbjct: 351 IQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELKSSLEYAFVLADHGHIEPEHLPHNV 410 Query: 569 FTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 V+ R + +++ ++ A GG E + +LGI R T+ +M++H Sbjct: 411 VV--TAPPVAEPRYGNPGH--DSQRQQLVQALHQAGGNKSEAARILGINRVTVLNRMRKH 466 Query: 629 GID 631 GID Sbjct: 467 GID 469 >UniRef50_A9BIG7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIG7_PETMO Length = 545 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/453 (28%), Positives = 229/453 (50%), Gaps = 36/453 (7%) Query: 195 LAETNRHLNQLNALLESM----DDGVISWDEQGNLQFINAQAARVLRLDATASQGR-AIT 249 LAE +L ++ ALL S+ D + D++G + +N R+ L G+ A Sbjct: 111 LAEEITNLREMEALLSSIIDSTSDAISVADQEGRVTMVNRAYTRITGLTPREVIGKPATI 170 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQ 308 +L ++ Q K+ P+ +V+ + + + A +T P+ ++ + + ++H + + Sbjct: 171 DLAEGESLHIQCAKEKKPIYNVKKRLATNKKEVVASVT--PLFVKNEFKGSVAVIHDISE 228 Query: 309 MRQLM-----TSQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 +++L+ T ++ K +HTF + + ++ + A +LL GE GVG Sbjct: 229 IQRLINELEATKRMLKKESATHTFDDLVVKSEIMKDVVAQASKVASVDVNLLLIGEFGVG 288 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL 420 K +L+QAIHN S R GPY+ +N L EE++ G EN L++ A+ GTL Sbjct: 289 KEVLAQAIHNASARKEGPYLKLNFSLIPRER-QEEYLFG-----ENSYLAQ---ANEGTL 339 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FLE I+ + +E+Q LL +K V + IP DV+ I TT DL +L +FS++ Sbjct: 340 FLENIDLMDIEMQRKLLAFLKDNVFDT-NYYDFIP-DVRFIFATTEDLKILSGLGKFSKE 397 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGN 539 L Y + I +PPLR R+ IP L L +L +++ + +DAL +L++ +WPGN Sbjct: 398 LLYKISVVNIEVPPLRERKEDIPELAQQLLHNLNRKYGRIVYGFTEDALKKLMNYSWPGN 457 Query: 540 DFELYSVIENLALSSDNGR--IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 EL +VI+ L+ DN + + +P+ + + ++V+ T + F EK+ I+ Sbjct: 458 IRELENVIDRAMLAMDNSDSIVTSTHIPDLI---EKVEEVTGTLKEMTEDF---EKKIIL 511 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + G E++ LG+ L+ K+ ++GI Sbjct: 512 EILEASHGNKTEVARKLGLTVRNLYYKLDRYGI 544 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/432 (26%), Positives = 212/432 (49%), Gaps = 20/432 (4%) Query: 211 SMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL--LTLPAVLQQAIKQAHPL 268 +MD V+S D G + N++ + + + + EL + P++ ++ Sbjct: 166 NMDKAVVSIDVDGKIDKYNSKFKELFNIKDSITGKNIFVELDFIKKPSINNFKKDKSCSF 225 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAH-M 327 + ++S+ + I LK ++ FI ++ ++ K+ + + Sbjct: 226 FYKRYGYDSKGIYNINKIVLKNELKGYVIDFIDKRDAIKNYNKMNKDYRIKLENIIGESV 285 Query: 328 PQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELY 387 + + LI A++S+ VL+ GE G GK L ++AIHN S R P+IAVNC Sbjct: 286 AIRNSKKEALI-----ASKSTSTVLITGESGTGKELFARAIHNHSNRVDNPFIAVNCAAI 340 Query: 388 GDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQG 443 D L E G + + G+L E+AH G++FL++I +++ LQS LL+V+++ Sbjct: 341 PDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSLHLQSKLLRVLQEK 400 Query: 444 VITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIP 503 + ++ ++ + IDV++IA T DL +V+ F LYY L+ I +P LR R+ IP Sbjct: 401 ELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPIKLPSLRERKEDIP 460 Query: 504 ALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVS 562 ++ + ++ K+ + ID + ++ WPGN EL ++IE S + I ++ Sbjct: 461 LIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEYSVNMSSSSIITMN 520 Query: 563 DLPEHLFTEQATD-DVSATRLSTSLSFAEVEKEAIINA--AQVTGGRIQEMSA-LLGIGR 618 +P+ + + +V + R+ + E+EK II A + +E++A LGI R Sbjct: 521 VIPQKIKNTSVEELEVKSDRI---IPLDELEKIEIIKALNKYKDYKKDKELTAKALGISR 577 Query: 619 TTLWRKMKQHGI 630 TL+RK++++ I Sbjct: 578 ATLYRKIEKYNI 589 >UniRef50_P38022 Arginine utilization regulatory protein rocR n=85 Tax=Firmicutes RepID=ROCR_BACSU Length = 461 Score = 160 bits (404), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/444 (27%), Positives = 213/444 (47%), Gaps = 22/444 (4%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP----AVLQQ 260 ++L+ +D G+ DE GN N + ++ ++ + + ++ + L Q Sbjct: 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQ 71 Query: 261 AIKQAHPLKHV-EATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMRQLMTSQL- 317 A+++ +K+V ++ F ++ Q I + PI++ + + + V ++ +L+ + Sbjct: 72 ALQEGKTIKNVKQSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMN 131 Query: 318 --GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G ++TF + P + +I ++A R+S VLL GE G GK L +Q+IHN S+R+ Sbjct: 132 KKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRS 191 Query: 376 AGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSR---LELAHGGTLFLEKIEYLAVEL 432 GP+I+ NC D+ L E + G + G + + E AHGGTL L++I L + L Sbjct: 192 GGPFISQNCAALPDS-LVESILFGTKKGAFTGAVDQPGLFEQAHGGTLLLDEINSLNLSL 250 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q+ LL+ +++ I R+ + + PIDV++IAT D + R + LYY L + I Sbjct: 251 QAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLII 310 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIEN-L 550 PPLR R+ I L + ++ F ++ I DD +S WPGN EL +IE + Sbjct: 311 PPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAM 370 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV-------EKEAIINAAQVT 603 +D I S LP + D+ A++ EK I N + Sbjct: 371 NFMTDEQTITASHLPYQYRMKIKPADIPEPETPRHQPAADLKEKMESFEKYVIENVLRKH 430 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQ 627 G I + + LGI R +L ++K+ Sbjct: 431 GHNISKAAQELGISRQSLQYRLKK 454 >UniRef50_C3X424 Transcriptional regulator containing GAF n=2 Tax=Oxalobacter formigenes RepID=C3X424_OXAFO Length = 540 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 164/307 (53%), Gaps = 15/307 (4%) Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR--- 401 A S+ VLL GE G GK L++Q IHN S+R A + +NC + E G ++ Sbjct: 234 ASSNATVLLQGETGTGKGLIAQTIHNLSDRKARDMVKMNCTAIPSELMESELFGHEKGAF 293 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 T N R+ E A TLFL++I + ++LQ LL V+++ I RL + I +DV+ I Sbjct: 294 TGALNKRIGHFEQADKSTLFLDEIGDMPLDLQPKLLSVLQEHQIRRLGSPHTISVDVRCI 353 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T DL +E F L+Y L+ F IT+PPLR R IP+L +R + + + Sbjct: 354 AATNCDLVAKIEDKTFRSDLFYRLNVFPITVPPLRERAEDIPSLARFFIRKYAREMNRHI 413 Query: 522 K-IDDDALARLVSCAWPGNDFELYSVIEN-LALSSDNGRIRVSDLPEHL--FTEQA---T 574 I + LA + WPGN EL +V+E + L+S G + +S PE L +T Q T Sbjct: 414 TGIPSETLALMTRLPWPGNIRELENVMERAVILTSQGGVLNLS--PESLLSYTTQNSPLT 471 Query: 575 DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI---QEMSALLGIGRTTLWRKMKQHGID 631 S+ + + E +K+ ++NA + TGG+I +A LG+ RTTL ++K+ GI+ Sbjct: 472 VHASSQPVVPVPAIPETDKDTLVNALRETGGQIGGKTGAAARLGLKRTTLLARLKRFGIN 531 Query: 632 AGQFKRR 638 A F+++ Sbjct: 532 ADDFRQK 538 >UniRef50_A8MHR4 Putative sigma54 specific transcriptional regulator n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHR4_ALKOO Length = 446 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 120/440 (27%), Positives = 209/440 (47%), Gaps = 23/440 (5%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L +L+++ +G+ D G + F N + L+ G + ++ + A L + I+ Sbjct: 9 LMTILDAISEGITIIDIDGKVIFGNKAYCNFIGLERENLIGAELKKIRS-SAKLPEVIQS 67 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP-------VEQMRQLMTSQL 317 L HVE ++ F++ G S + + +EQ+ + M +++ Sbjct: 68 GENLMHVERKENGEYYFVNMYSVYSKDRVIGGISVVTFFNEAFDFKKQIEQLEKKMETKI 127 Query: 318 GKVS------HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 +++ + F + + + Q A + VLL E G GK L + AIHN Sbjct: 128 LRINKANSARYKFESITGVSKSMVDVKNTAMQVAETDMTVLLESETGTGKELFANAIHNF 187 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEY 427 S R +IA+NC + L E G G T + G++ E AH GTLFL++I Sbjct: 188 SLRKNEVFIAINCANFRGEILDSELFGYVEGAFTGAKKGGKMGLFEAAHKGTLFLDEISE 247 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + + LQ+ LL+ +++ +I + + IP+DV++I + A+L V++ +F LYY L Sbjct: 248 MDISLQAKLLRALQENIIRPVGSVTDIPVDVRIICASNANLKAYVKEGKFRADLYYRLSV 307 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 F I IPPLR R I + ++L+++ K+ ++ID A+ L WPGN EL +V+ Sbjct: 308 FPIKIPPLRERVEDISVITIDQLKNISKKLKRVIRIDQGAMEVLKKYHWPGNVRELVNVL 367 Query: 548 ENLALSSDNGRIRVSDLPEHLFT--EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 E + + +G I + LPE L+ E T+D + R+ + E+ KE A G Sbjct: 368 EFSSFKAKDGLITLECLPESLYAVEEINTNDKLSERVR-AFEKREILKELNKYGADTEGK 426 Query: 606 RIQEMSALLGIGRTTLWRKM 625 R + + LGI +L+ K+ Sbjct: 427 R--KAAKKLGISLASLYNKI 444 >UniRef50_B2TBW4 Proprionate catabolism activator, Fis family n=7 Tax=Burkholderiaceae RepID=B2TBW4_BURPP Length = 678 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 137/466 (29%), Positives = 213/466 (45%), Gaps = 57/466 (12%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD----ATASQGRAITELLTLPAVLQ 259 +LN ++ + DGV ++D+ G ++ +N +L LD A RA+ LL + Sbjct: 226 RLNTIVAHLRDGVAAFDDAGQVEAVNPAMLDLLGLDREQDVPAQVERAVGPLL------R 279 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET---QGTSFILLLHPVEQM--RQLMT 314 + I+ P++ + ++ V PI+E G+ L V Q R L T Sbjct: 280 ETIEHNLPIEERIEQIGGRALIVNCV----PIVEQGVRSGSVITLQDALVAQRIDRSLRT 335 Query: 315 SQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 SQ K H + + R+ R A VLL GE G GK L++Q IHN Sbjct: 336 SQRPKHLVARHQLDDLIGNSAALERVRRLARAGAAHDATVLLSGESGTGKELVAQGIHNA 395 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEY 427 S R P++A NC + + E G + G+ E+AH GT+FL++I Sbjct: 396 SRRRGNPFVAFNCAALPEGLIESELFGHEEGAFTGARRGGKPGLFEIAHTGTIFLDEIGE 455 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + LQS LL+V+++ + +L + R P+DV+VIA T DL LVEQ F LY+ L+ Sbjct: 456 MPAALQSRLLRVLQEREVMKLGSGRATPVDVRVIAATHRDLHALVEQGAFRADLYFRLNL 515 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS--------CAWPGN 539 ++ +PPLR RR +P L R L R + + + + A R+++ AWPGN Sbjct: 516 LQLKLPPLRDRRDDVPQLA----RYLLSRSALQYGLTEGASERVLAFLAPLFEHYAWPGN 571 Query: 540 DFELYSVIENLAL-----SSDNGRIRVSDLPEHLFTEQATD-----DVSATRLSTSLSFA 589 EL +++ A+ + D G+ + PE + A VS T+ + A Sbjct: 572 VRELENLLTRAAIYCGDAAGDAGQDWQAMFPEFGRMKAAAATLSDFGVSGTKNGANGVNA 631 Query: 590 EVE---------KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E + +++A + GG S LGIGRTTLWR +K Sbjct: 632 AAEPAPSRISPTRGDVLHALEQAGGNRAAASRALGIGRTTLWRLLK 677 >UniRef50_Q1PVM8 Similar to sigma-54 dependent transcriptional response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PVM8_9BACT Length = 453 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 95/296 (32%), Positives = 161/296 (54%), Gaps = 7/296 (2%) Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 ++++ Q + ++ VL+ GE G GK L+++ IHN S R P + +N + L Sbjct: 154 QKVLTMVNQISGTNATVLITGESGTGKELIAKTIHNNSLRKHNPLVILNSAAIPENILES 213 Query: 395 EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G G T R + E AH GT FL++I + + Q+ LL+V++ G+ITR+ + Sbjct: 214 ELFGHEKGSFTGALYQRKGKFEYAHRGTFFLDEIGDMPLSAQAKLLRVLEDGMITRIGSN 273 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 I +DV++IA T +L L+++ +F LY+ L+ I +PPLR R IP L++ +R Sbjct: 274 ESIEVDVRLIAATNQELGNLIKEGKFREDLYFRLNVIRIKLPPLRERLEDIPLLLDAFIR 333 Query: 512 SLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 + +S L+I +A L+ WPGN EL + IE++ + + + V DLP+H+ Sbjct: 334 EFSRLYSKEILQITPEARKILLRYQWPGNIRELKNCIESMVVITTKKYLDVEDLPDHI-- 391 Query: 571 EQATDDVSATR-LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 E+ +D++ + L ++ + E E I GG +E + +LGIG TL+RK+ Sbjct: 392 EKKSDEMPVSHGLMAGMTMEDAEIELIKCTLASVGGNREEAARMLGIGERTLYRKL 447 >UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Bacillus RepID=C1PD04_BACCO Length = 950 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 100/298 (33%), Positives = 159/298 (53%), Gaps = 5/298 (1%) Query: 338 IHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI 397 +H AA++ VL+ GE G GK L + AIH+ES R P+IA+NC + EF Sbjct: 649 VHIAETAAKTDANVLIIGESGTGKELFANAIHHESLRKDKPFIAINCGAVPKDLIHSEFF 708 Query: 398 G---GDRTDNENGRLSRL-ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 G G T ++ G L E A+GGT+FL++I + ++LQ LL+V+++ ITR+ + Sbjct: 709 GYSEGAFTGSKKGGKKGLFEEANGGTVFLDEIGEMPLDLQVTLLRVLQEREITRIGEHKP 768 Query: 454 IPIDVKVIATTTADLAMLVEQN-RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 +P+DV++IA T +L + N F LYY L+ F+I +PPLR R G I L L Sbjct: 769 VPVDVRIIAATNKNLRDEIAYNGSFRSDLYYRLNVFQIELPPLRKRPGDIQELSEYFLSQ 828 Query: 513 LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ 572 L ++ TR + DA+ L WPGN EL ++IE S + + + + Sbjct: 829 LNRKNGTRKEFAADAVQILKQYEWPGNIRELENIIERSYYLSGFHSVILPEFLDPYLLNT 888 Query: 573 ATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ E EK+ ++ + TG I ++S +LG+ RTT+++K++Q+GI Sbjct: 889 YKHTQQQDQMIEGKETEEPEKQHLLALLEETGFNISKISRILGVSRTTVYKKLQQYGI 946 >UniRef50_A6GKI8 Sigma-54 dependent transcriptional regulator, Fis family protein n=2 Tax=Proteobacteria RepID=A6GKI8_9DELT Length = 486 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 107/316 (33%), Positives = 154/316 (48%), Gaps = 28/316 (8%) Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENG 407 VL+ GE GVGK ++Q +H+ES R+ GP+IA+NC + E G +R T Sbjct: 165 VLVMGETGVGKERVAQLVHDESPRSGGPFIALNCAAIPSELMESELFGHERGAFTGANRA 224 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ELAHGGTLFL++I L + Q+ LL+V++ + L + +LI +DV++IA T Sbjct: 225 RRGFFELAHGGTLFLDEIGELPLSAQAKLLRVLQDRQLRPLGSDKLIDVDVRLIAATNQV 284 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDD 526 L VE RF LYY L E+ IPPLR R I L+ +L L D Sbjct: 285 LEAEVEAARFRSDLYYRLRVIELEIPPLRERSEDIARLLEAQLERFNGVLGRSLSGYSDV 344 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA------- 579 A+ L++ WPGN EL +V+E AL + + DLP + A+D +A Sbjct: 345 AMRALLAYRWPGNVRELINVVERAALLCEGPLVEPEDLPVSIAAGAASDSRAAQVNRGVG 404 Query: 580 TRLSTSLS-----------------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 T L S E E+ ++ Q TGGR+ + G+ +L+ Sbjct: 405 TPLGDSAPSWGVRLDRPWREVREALLREGERAYLVGLLQATGGRVGATATRAGLAERSLF 464 Query: 623 RKMKQHGIDAGQFKRR 638 KMK+HG+ F+RR Sbjct: 465 EKMKRHGLRKEDFRRR 480 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 16/336 (4%) Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 H + +L ++G F M + L + A + +++ GE G GK L Sbjct: 266 HEFKNFNKLNNDKIG-----FKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGKEL 320 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSRLELAHGGTL 420 + +A+H ER P++ VNC L E G ++ T + R+ R ELAH GTL Sbjct: 321 VVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKGTL 380 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + + +Q+ L++I+Q R+ + I +DV++I T DL V++ RF Sbjct: 381 FLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFRED 440 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGN 539 LYY L+ + +PPLR R+ IP L+++ L+ K+F KI + L+ WPGN Sbjct: 441 LYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWPGN 500 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV-----EKE 594 EL + +E + IR+++LP + D S + T + E+ E+E Sbjct: 501 VRELENAMERAIILCGKDLIRLNNLPISIVKNNKEFDES--KHVTPIDIKEITIRNMERE 558 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 II A + + S LGI R TL+ KMK+ I Sbjct: 559 IIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 124/458 (27%), Positives = 215/458 (46%), Gaps = 36/458 (7%) Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL- 236 + + ++V N++ S + E+ R +L S+ + ++ DE G + N A ++L Sbjct: 92 VVEVFKDVSNVV---SCILESQRQKTYKETILNSIVEAILVLDENGYIVEHNNIAKKMLC 148 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 R + GR I EL+ L L++ Q + + E+ A + P+ G Sbjct: 149 RTSEESLIGRHIKELVNLS--LEEFPPQG---ERTDVYIETPCGRQKASTLVSPM--NLG 201 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 +++ + ++Q S K+ + F P ++++ + + + VL+ GE Sbjct: 202 FGYVVSFYVIQQDNM---SFCDKLDYIFTK----SPTFQKVLDLVKSCSEHNVNVLIEGE 254 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLE 413 G+GK+LL++ IH S R P++ VNC + L E G G T + + E Sbjct: 255 TGIGKSLLAKYIHLLSPRRDAPFVKVNCAAIPENLLEAELFGYVKGAFTGATKDKPGKAE 314 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 +A GGTLFL++I + + LQ+ +L ++++ RL + + ++IA+T D+ L+ Sbjct: 315 IADGGTLFLDEIGDMPLSLQAKILHLVEEKEFERLGSNTPRKTNTRIIASTNKDIKELMR 374 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 Q RF LYY L I +PPLR R+ IP L+NN + K +S R+K I DA+ L+ Sbjct: 375 QGRFREDLYYRLSVVNIYLPPLRERKEDIPLLINNFIEKYSKLYSKRVKSISGDAIKMLL 434 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 +PGN EL +IE ++ I + D+ + ++ + E Sbjct: 435 GYDFPGNIRELEHIIEKAVITCRGSIINIEDI--------------SLDFQSNNHKQQEE 480 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 KE I + + +LGI RTTLWRK+K+ GI Sbjct: 481 KERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKLKELGI 518 >UniRef50_C6DXM3 Sigma-54 interaction domain family protein n=3 Tax=Clostridium RepID=C6DXM3_CLOBO Length = 585 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 128/448 (28%), Positives = 218/448 (48%), Gaps = 39/448 (8%) Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-LDATASQGRAITELLTLPAVLQQ 260 L LN +++ MD GVI +++G + IN +A +L +D + E+ + Sbjct: 156 LRSLNLVIDKMDRGVIILNKKGKITHINKKAMEILNFIDNHFIHEVKVEEV-------GE 208 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKV 320 +I H K +Q + I + E Q I++ + + ++T V Sbjct: 209 SIAGMHEYK---LKINNQKFSVVGNIHDMGLNENQFDK-IIIFQDNKSFKDIVTG----V 260 Query: 321 SHTFAHMPQDD--PQTRRLIHFGRQAAR---SSFPVLLCGEEGVGKALLSQAIHNESERA 375 S+ ++ +D + +I + + SS VL+ GE G GK + ++A+HNE R Sbjct: 261 SNAGNNIVCNDILGECEVMITLKKNLKKISLSSSTVLITGESGTGKEMFARAMHNEGNRK 320 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLAVE 431 +IA+NC D+ L E G G T + G++ + ELA+ GT+FL++I + + Sbjct: 321 KEAFIAINCAAIPDSLLESELFGYVKGAFTGASSTGKIGKFELANKGTIFLDEIGDMPLY 380 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 LQ+ LL+V+++ I ++ + + I IDV+VIA T +L L+E+N+F LYY L+ Sbjct: 381 LQTKLLRVLQERRIIKIGSNKPIDIDVRVIAATNKNLVKLIEENKFREDLYYRLNVIPFN 440 Query: 492 IPPLRMRRGSIPALVNNKLRS----LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 IPPLR R I LV N + L+K FS+ + ID+ + +WPGN EL + I Sbjct: 441 IPPLRERIQDIKILVYNFIEKYTKLLDKHFSS-IHIDNKVWETFYNYSWPGNIRELENTI 499 Query: 548 ENL--ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 E + L +D G + + +P + + + + E+EK II A + G Sbjct: 500 EFMINMLGTD-GNLTIDSIPNSVLYNERKIKKGKKEV---YNLKELEKNEIIKALNIYGP 555 Query: 606 RIQ---EMSALLGIGRTTLWRKMKQHGI 630 Q + LGIG TL+RK++++ + Sbjct: 556 SAQGKKAAAKKLGIGIATLYRKIEEYNL 583 >UniRef50_B8FEY3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Deltaproteobacteria RepID=B8FEY3_DESAA Length = 460 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 190/362 (52%), Gaps = 23/362 (6%) Query: 289 KPIIETQGTSFI---LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAA 345 KP Q F+ L ++ V Q +L+ ++LG ++F ++ P + + A Sbjct: 102 KPFQNEQLILFVKQALAMYRVVQENRLLKNELGD-RYSFGNIIGKSPAMVNIFDTIVKVA 160 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---T 402 ++ VL+ GE G GK +++++IH S R P++AVNC ++ L E G ++ T Sbjct: 161 PTNATVLIQGESGTGKEMVAKSIHFNSHRKDAPWVAVNCAALAESILESELFGHEKGAFT 220 Query: 403 DNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + R ELA GGTLFL++I ++ LQ LL+V+++ R+ + I +D+++IA Sbjct: 221 GAAAMKKGRFELADGGTLFLDEIGEISSSLQVKLLRVLQEKTFERVGGVKPIEVDIRLIA 280 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TR 520 T DL VE + F L+Y L+ I +PPLR R+ IP LV++ L+ S +R Sbjct: 281 ATNRDLKKEVENSAFREDLFYRLNVLPIQLPPLRERQKDIPLLVDHFLQKYASGPSGESR 340 Query: 521 L-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD---- 575 + K+ D AWPGN EL +VIE + ++ I V+DLP L T ++ Sbjct: 341 VRKVHPDVHRLFQEYAWPGNVRELENVIERAIILCNSDAISVNDLPREL-TRSVSNTLHM 399 Query: 576 ---DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA-LLGIGRTTLWRKMKQHGID 631 V AT L +LS E +A+I A + +Q +A +LGIG++ L +K+K+ G+D Sbjct: 400 EGIPVDAT-LYETLSMVE---QAMIKRAMLMSDNVQSHAAQILGIGKSGLNQKIKKFGLD 455 Query: 632 AG 633 G Sbjct: 456 FG 457 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 124/465 (26%), Positives = 217/465 (46%), Gaps = 42/465 (9%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT- 253 L ++L L+ +LE DG++ D+ G + IN A L +D S G+ +TE++ Sbjct: 114 LKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSIGKHVTEVIES 173 Query: 254 --LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI-------LLLH 304 + V + I + L+ V+ + ++ VI ++ G LL Sbjct: 174 TRMHIVAKTGIAETAQLQKVKGKYMIANRI--PVIENGELVAVAGKVLFKNIKELDLLYK 231 Query: 305 PVEQMRQLMTSQLGKV------SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + G+ S++F ++ + + ++AA+++ VL+ GE G Sbjct: 232 KIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESG 291 Query: 359 VGKALLSQAIHNESERAAGPYIAVNC----------ELYGDAALAEEFIGGDRTDNENGR 408 GK L + AIH ESER G +I +NC EL+G A F G + G+ Sbjct: 292 TGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGA--FTGAKKE----GK 345 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + + ELA GGT+FL++I + + +Q+ LL+V+++ + R+ A R IDV+VI+ T DL Sbjct: 346 IGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDL 405 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 ++++ F LYY L+ + IPPLR RR I L L + K+ + K +A Sbjct: 406 EKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEA 465 Query: 528 LARLVSCAWPGNDFELYSVIEN-LALSSDNGRIRVSDLPEHLFTEQ-ATDDVSATRLSTS 585 ++ L++ W G +L ++IE + L N I P ++ + + +D +L Sbjct: 466 MSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDSDLNKL--- 522 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +VEK+ I+ + L I RT+L+ K+ +H I Sbjct: 523 --INQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_C5BI62 Transcriptional regulator, Fis family n=5 Tax=Gammaproteobacteria RepID=C5BI62_TERTT Length = 642 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 161/301 (53%), Gaps = 16/301 (5%) Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDR 401 A++ VL+ GE G GK L++QAIH S RA P I VNC EF G G Sbjct: 339 AQTEANVLVYGESGTGKELIAQAIHQASRRADKPMIRVNCAAIAHELFESEFFGHIKGAF 398 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 T R+ R ELA+GGTLFL+++ + +ELQS LL+V+++G + R+ + +DV++I Sbjct: 399 TGALRDRIGRFELANGGTLFLDEVGEIPLELQSKLLRVLQEGQLERVGEEKTREVDVRII 458 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TR 520 A T DL +Q RF LY+ L+ F I PLR RR I L + L L +F + Sbjct: 459 AATNRDLKAEADQGRFREDLYFRLNVFPIQAVPLRDRREDIGLLAAHYLEQLCHKFPRQQ 518 Query: 521 LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA------- 573 K+ L +L AWPGN EL +V+E ++S GR+ + DLP+H + A Sbjct: 519 CKLTQRDLKQLRDYAWPGNVRELQNVLERAVITSRAGRLNL-DLPQHNHQDNAQPTLPAL 577 Query: 574 -TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI---QEMSALLGIGRTTLWRKMKQHG 629 T+ ++ T + + + K ++ A + +G ++ +ALLG+ TTL ++K+ G Sbjct: 578 NTESITETEILSDDDMQALVKHNMLAALEKSGWKLFGSDGAAALLGMKPTTLASRIKRMG 637 Query: 630 I 630 + Sbjct: 638 L 638 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 139/548 (25%), Positives = 246/548 (44%), Gaps = 59/548 (10%) Query: 117 ALSLAAISGQAVKTMADQHFKQVLWNWAF---CATPL-----FDSKGRLTGTIALACPVE 168 AL A V + D++ + + + F C P+ F+ K +LTG + Sbjct: 65 ALENGATFATRVDVVMDRNLQIIDEDTCFSEICHKPIDRLVIFNQKQKLTGVLT------ 118 Query: 169 QTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFI 228 + L + R + N T+ LAE +L +++E+ DG+I D QG +Q + Sbjct: 119 -----RIDLINKVHRALEN---TEDKLAEAFETNQRLRSIIEASYDGIIVVDSQGVVQMV 170 Query: 229 NAQAARVLRLDATASQGRAITELLTLP--------AVLQQAIKQAHPLKHVEATFESQHQ 280 N+ R+ +S A T L +P V Q+ ++Q K A ++ ++ Sbjct: 171 NSSYFRL----QDSSHDPAGTSLEQIPLDCHDDVIKVFQEVMQQG---KVAFARYQGEN- 222 Query: 281 FIDAVITLKPIIETQGTSF--ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQD-------- 330 + IT PI++ Q + ++ LH ++ QL Q + S + Sbjct: 223 LSELTITGSPILDDQNSPVHVVISLHDFTELNQLRL-QSARYSEELKSLRTKNQKDLIFH 281 Query: 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390 D R++ + + VL+ GE GVGK ++++ IH S RA GP+I +NC + Sbjct: 282 DTAMERVVKKALRVSEVDSTVLITGESGVGKEVIARTIHRNSPRAEGPFIEINCGAIPEH 341 Query: 391 ALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 L E G ++ N+ G+ +ELA+GGTL L+++ L + LQ LL+ +++ I Sbjct: 342 LLESELFGYEKGAFTGANKEGKPGMMELANGGTLLLDEVGDLPLNLQVKLLRALQEQEIY 401 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ R + ++V+++A T +L ++ + +F L+Y L+ I IPPLR R+ I L Sbjct: 402 RIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLFYRLNVVPIHIPPLRERKSDILPLS 461 Query: 507 NNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE 566 + L +++ + WPGN EL +++E L + S+ I LP Sbjct: 462 MHFLEKFNNKYNFHRLFSSEVFKLFEQYPWPGNIRELANLVERLIIMSEQETIYPDQLPP 521 Query: 567 HLFTEQATDDVSATRLSTSLSFAE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 F + +T + + + + E VE E I+ A + ++ LG+ +TL Sbjct: 522 TFFGKPSTSPLQIS-IDEIIPLKEAREQVESELIVKALKQYRS-LRRAGDALGVAHSTLL 579 Query: 623 RKMKQHGI 630 RK + GI Sbjct: 580 RKARALGI 587 >UniRef50_Q315F1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315F1_DESDG Length = 683 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 207/459 (45%), Gaps = 29/459 (6%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 L E + L A+ S+ D +I+ D G + INA A ++L + A A R L L Sbjct: 223 LNEKESYRQHLEAVFSSIQDAIITVDLNGVVLNINAAAEKMLGIPA-AQAVRMHHTALQL 281 Query: 255 PA------VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 P VL + P++ A E Q + ++ P+I GT +L + Sbjct: 282 PCARACQDVLGATLGSGTPVREFRAVSEDGAQVM--ILGGTPLISLDGTFSGAVLSCRDI 339 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 R + Q + H+F+++ + L A VL+ GE G GK L+++A+ Sbjct: 340 TRLVSLEQQLRQRHSFSNIIGRSKVMQSLFGLLENLAAYDTTVLVTGESGTGKELVAEAL 399 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKI 425 H R+ GP + VNC ++ L E G G T R R E A GGT+FL++I Sbjct: 400 HYNGARSGGPLVKVNCTALSESLLESELFGHVRGAFTGAVRDRAGRFETAEGGTIFLDEI 459 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 +++ +Q LL+ ++ R+ DV+++A T ADL + + F L+Y L Sbjct: 460 GDISMRIQVLLLRFLESKEFERVGDTTPRRADVRIVAATNADLHRRISEGTFRADLFYRL 519 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + + +PPLR RR IP LV + + TR+ +D+ A+A LV WPGN EL Sbjct: 520 NVTSVHLPPLRERREDIPLLVQHFVEQCNTELGTRVAGVDEKAMAALVRAPWPGNVRELK 579 Query: 545 SVIENLALSSDNGRIRVSDLPEHL---------FTEQATDDVSATR-------LSTSLSF 588 +E+ + +G + LP L F + VSA ++ Sbjct: 580 HTLEHACVLCRDGYVEAGHLPAELAAVESPPVRFDAAVSGPVSAAAGGAVPQPVAGGFGR 639 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 +++ +I A + GG + LLG+GR TL+RK+++ Sbjct: 640 RQLDARSITAAIEQAGGNKARAARLLGVGRATLYRKLRE 678 >UniRef50_B4CU93 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU93_9BACT Length = 465 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 118/361 (32%), Positives = 176/361 (48%), Gaps = 30/361 (8%) Query: 299 FILLLHPVEQMRQLMTS-----QLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR------- 346 FI + VE++ L+T QL + + T Q+ +RRL H RQ A Sbjct: 105 FISKPYAVEELLSLITRAIEQRQLQREAETLREEKQE--LSRRLAHAERQLAPVAQSRSM 162 Query: 347 ------------SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 + VLL GE GVGK +++ +H S RA GP + +NC + + Sbjct: 163 RNVRDLVERFAPTDANVLLLGESGVGKEVVANQVHRLSRRADGPMVKLNCAAFPANMIEG 222 Query: 395 EFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 E G G T + A GGTLFL++I + VELQ+ L+V+++ RL + Sbjct: 223 ELFGYVKGAFTGAVADFPGMIAQATGGTLFLDEIAEMPVELQTRFLRVLQEREFRRLGST 282 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 + IP + +++A T + A V + LYY L+ F+I IP LR RR IPALV L Sbjct: 283 KTIPANFRLVAATNRNAAEAVRNGTLRQDLYYRLNTFQIEIPALRERREDIPALVAVFLA 342 Query: 512 SLEKRF-STRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 K+ I +A RL++ WPGN EL + IE + +D I V +LP + Sbjct: 343 RFAKQMGKPEPTIAPEAFDRLLNYDWPGNVRELQNAIEYSVVLADQALITVKELPREIQL 402 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + A + SL+ + E++AI+ A G ++ +A+LGI R TL+ KMK HGI Sbjct: 403 PAALHEARAANAAASLNLEDQERQAILQALTQAHGNKKKAAAILGIHRPTLYNKMKHHGI 462 Query: 631 D 631 + Sbjct: 463 N 463 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 128/456 (28%), Positives = 214/456 (46%), Gaps = 42/456 (9%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L+S+ DGV++ D +G + + N R+ L GR ++E++ +L + P Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHILD-VLASRTP 90 Query: 268 L--------KHVEAT----FESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 L HV + Q + + AV + I T + L +++ R T Sbjct: 91 LLGVRTRVFDHVVVSNIVPVYHQGRMVGAVSVFRDI-----TEVLALSRQLDEARN--TI 143 Query: 316 QLGKVSHTFAHMPQD------DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 L + + T A + +D P +R+ R+AA PVL+ GE G GK ++++ IH Sbjct: 144 DLLRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIH 203 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGDRT----DNENGRLSRLELAHGGTLFLEKI 425 N S R + P IAVNC L E G + + GR +LA GGTLFL++I Sbjct: 204 NRSARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEI 263 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + LQ+ LL+ ++ G I R+ + ++V++I+ T +LA LV + RF LYY L Sbjct: 264 GDMDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRL 323 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELY 544 + +PPLR RR +P + + +R + +R + AL L++ +PGN EL Sbjct: 324 RVIHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELE 383 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR----------LSTSLSFAEVEKE 594 +V+E + ++ I V DLP + + A R T + EVE+ Sbjct: 384 NVVEQAVVLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERR 443 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ A E++ LG+ R TL+RK+ ++G+ Sbjct: 444 -VLEAGLRAFDSKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_C6C1Z7 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C1Z7_DESAD Length = 465 Score = 159 bits (401), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 154/309 (49%), Gaps = 14/309 (4%) Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR 401 RQ A + VLL GE G GK+L+++ IH S R P+I+V+C D + E G ++ Sbjct: 158 RQVAGTRTTVLLTGETGTGKSLIAKLIHAHSNRKDMPFISVHCGAIPDTLVESELFGHEK 217 Query: 402 ---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T +L + ELAH GT+FL++I ++ +Q LL VI++ +I R+ + +DV Sbjct: 218 GAFTGAIRRKLGKFELAHEGTIFLDEIGTVSQSVQVKLLNVIQERIIQRVGGENDLSVDV 277 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA T D+ L E+ +F R L+Y L+ F I IPPLR RR IP L +R + Sbjct: 278 RIIAATNEDMGQLCEEGKFRRDLFYRLNVFPIRIPPLRERREDIPRLSEGFIRQFNGLLN 337 Query: 519 TRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV 577 T +K I L L+ WPGN EL +VIE + ++ P L Q +V Sbjct: 338 TEIKGIHPQVLDTLLEYDWPGNVRELENVIERACILETGDILQPDSFPPDLLDTQG--EV 395 Query: 578 SATRLSTSLSFAEV--------EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 + + TSL E EK+ + + + G I+ + GI L + M +HG Sbjct: 396 VTSPVKTSLPLKEARQITVDRFEKQYLSSLLEQCNGVIKTTAEKAGITTRQLSKLMNRHG 455 Query: 630 IDAGQFKRR 638 + FK R Sbjct: 456 LKRTDFKNR 464 >UniRef50_Q3ACC6 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACC6_CARHZ Length = 480 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 131/467 (28%), Positives = 227/467 (48%), Gaps = 34/467 (7%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 +TD +LA+ R +L +L+S+ +G+ DE+G +++IN R+ ++ G+ I Sbjct: 22 ITDLVLAQKMRE--ELLKILDSLQEGIEIADEKGEIKYINQAFTRITGIEKEERIGKNIF 79 Query: 250 ELLTLPAVLQQAIKQAHPL---------KHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 E+ A L QAIK P+ E + FID ++ ++ T + Sbjct: 80 EVSPYGA-LAQAIKLMKPVIGHRTLVGGSKAEVVSNAVPIFIDGKLSGGAVVFQTVTDIL 138 Query: 301 LL---LHPVEQMRQLMTSQLGKVS---HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 + L ++M + + +L ++S +TF + D + ++AA+S VLL Sbjct: 139 KISEQLSKTQEMLESFSQKLSELSGCRYTFNDIIGKDEKLLEAKKIAKKAAKSDATVLLL 198 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDR---TDNENGRLSR 411 GE G GK + +QAIH ES R++ P++ +NC + L E G ++ T ++ + Sbjct: 199 GESGTGKEMFAQAIHMESSRSSKPFVKINCAAIPENLLESELFGYEKGAFTGATKTKMGK 258 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 ELAH GT+FL++I L + LQ+ LL+V++ R+ I DV+VIA T DL + Sbjct: 259 FELAHQGTIFLDEIGDLNLFLQAKLLRVLEDKQFERVGGIETITTDVRVIAATNRDLKRM 318 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMR-RGSIPALVNNKLRSLEKRFSTRLK-IDDDALA 529 V++ +F LY+ L +I +PPLR R + I + N + L +RF ++K + A Sbjct: 319 VKERKFREDLYFRLKVIDIELPPLRKRNKEDILLIAENIIGRLNRRFGKKVKGLTPKAQE 378 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL--- 586 + WPGN EL +++E + D+ L EH F + L S Sbjct: 379 LFQNYPWPGNIRELENLLERTIILVDD-----EYLDEHHFYGYFSKANEPPVLEKSFPIK 433 Query: 587 SFAEVEKEAIINAAQVTGGRI---QEMSALLGIGRTTLWRKMKQHGI 630 ++EKE I A + G + + ++ LGI +L+ K+K++ + Sbjct: 434 KLGDIEKEVISMALEKYGRSLSAKKMIAEKLGISLASLYNKIKRYNL 480 >UniRef50_C6BSU4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=C6BSU4_DESAD Length = 454 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 126/455 (27%), Positives = 206/455 (45%), Gaps = 36/455 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 +L LL + G+ D +G ++ +N + D A QG L + Sbjct: 6 KLPDLLNEVPIGIAVLDIEGRVKLVNRAWQTITGADPDAMQGLKCYLGLRCDYCFKGC-- 63 Query: 264 QAHPLKHVEATFESQHQFIDAV----------ITLKPIIETQG--TSFILLLHPVEQMRQ 311 P+ +A F++ D + + + PI+ + + +I + + Q+ + Sbjct: 64 ---PVMADKADFQTVSVDADIIDRTRTKVPIRLNISPIVNSDNVISGYIETIQDIRQVAE 120 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 L S +++ + P+ ++ A + VL+ GE G GK +L++AIHN Sbjct: 121 L--SSTASKAYSLGGLIGTSPEMVKIFSMVPSIAATDSSVLITGETGTGKDVLAEAIHNA 178 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYL 428 S+RA P+I VNC + L E G G T R R++LAH G+ FL +I L Sbjct: 179 SDRAGAPFIKVNCGALPETLLESELFGHVKGAYTGANEDRPGRIKLAHNGSFFLTEIGDL 238 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + LQ LL + VI L + R DV+VI T DL +V + F L + L+ Sbjct: 239 PLPLQVKLLSFLDDKVIHPLGSSRGFNADVRVIVATHRDLKKMVHEKTFRADLLFRLNVV 298 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA-WPGNDFELYSVI 547 + +PPLR R I L N+ L +F+ ++K A+++S +PGN EL +++ Sbjct: 299 HLHLPPLRERGDDILLLKNHFLMEYCNKFNKKIKGFSKKSAKILSAYRYPGNVRELSNIV 358 Query: 548 ENLALSSDNGRIRVSDLPEHLFTEQ------------ATDDVSATRLSTSLSFAEVEKEA 595 E D I + LP +L TEQ A + + S++ ++ + EK+ Sbjct: 359 EYAVNFCDRDLIGSAHLPAYL-TEQDILRPVTESAHAAQERTAPLEYSSAQNWDDAEKQM 417 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I++ GGR E ++ LG R TLWRKMK+H I Sbjct: 418 IMDTLLKCGGRKGEAASRLGWSRATLWRKMKKHSI 452 >UniRef50_C6PWR5 Putative sigma54 specific transcriptional regulator n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PWR5_9CLOT Length = 635 Score = 159 bits (401), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 132/447 (29%), Positives = 216/447 (48%), Gaps = 36/447 (8%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 +L +L+S+ GVI +E + N A ++ L + G+ E T+P + Sbjct: 200 RLKVILDSITQGVIVTNEHNKIVLYNPAAEKIFDLSSKKVLGKDAFE--TIPNT-----R 252 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILL-----LHPVEQMRQLMTSQL 317 + L+ EA I I IE G ++ + ++Q+ Q + ++ Sbjct: 253 MHNVLESGEAEIGVLQDINGGTIATNRIPIEVDGKRIGVVSTFEDITKIQQLEQKIRERI 312 Query: 318 GKVSHTFAHMPQDD-PQTRRLIHFGRQA---ARSSFPVLLCGEEGVGKALLSQAIHNESE 373 K + +D +I + A A++ +L+ GE G GK L +Q+IHN S Sbjct: 313 YKKGFVAKYFFEDILTANESMIELKKIADLYAKTDAEILIQGESGTGKELFAQSIHNAST 372 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIEYLA 429 R+ GP++AVNC D L E G G T + G+ ELAH GT+FL++I ++ Sbjct: 373 RSNGPFVAVNCAAIPDNLLESELFGYEGGAFTGAKKEGKQGLFELAHNGTIFLDEIGEIS 432 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 LQ+ LL+VI++ I R+ ++IPID+++++ T +L +E F + LYY L+ F Sbjct: 433 KGLQARLLRVIQEKEIMRVGGDKVIPIDIRIVSATNQNLEKQIETGEFRQDLYYRLNVFN 492 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR-----LVSCAWPGNDFELY 544 I +PPLR R+ I +L+ NKL K+F+ ID + + + L+ WPGN E Sbjct: 493 IILPPLRERKEDI-SLIANKLL---KKFAENYDIDFNKVIKEINPLLIEYDWPGNIREFN 548 Query: 545 SVIENLALSSDNGRIR--VSDLPEHLFTEQATDD--VSATRLSTSLSFAEVEKEA-IINA 599 ++IE LAL + + L + + T +A D+ V L L A E E IIN+ Sbjct: 549 NIIERLALVAVQTKSHNWAETLRKVMHTVEAMDEHIVVKVNLKNGLKDAVKEFEKYIINS 608 Query: 600 AQVTGGRIQE-MSALLGIGRTTLWRKM 625 + + ++ + L IGR T WRK+ Sbjct: 609 MLLKYDQDKDKVIKELKIGRATFWRKI 635 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 108/412 (26%), Positives = 205/412 (49%), Gaps = 22/412 (5%) Query: 227 FINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVI 286 F NA +VL+ R IT + P+ + I A P+ F S+++ I Sbjct: 186 FPNALILKVLK------NPRKITNVNNEPSPGKTVILSAVPI------FNSKNKLIAVAS 233 Query: 287 TLKPIIETQGTSFILLLHP--VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 T + I E S L+ VE ++ +++F+ + + I ++ Sbjct: 234 TDRDITEVISLSKELMQEKKKVEFFESAYKKEIAS-NYSFSSIIGKSQKIIENIAIAKKV 292 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE---FIGGDR 401 A +S VL+ GE G GK + ++AIH S R G ++A+NC + E ++GG Sbjct: 293 APTSASVLITGESGTGKEVFAKAIHKASGRT-GNFVAINCSAIPENLFESELFGYVGGTF 351 Query: 402 TDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T + + G++ + E A+ GTLFL++I + + +Q+ LL+V++ GV+ R+ +++ ++ ++ Sbjct: 352 TGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQDGVVYRIGSQKGTKVNCRI 411 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 +A T DL ++++N F L+Y I +PPLR RR I ++ + + ++ + Sbjct: 412 LAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDIKDFIDLFINQISEKEGIK 471 Query: 521 LK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVS 578 + ID + L S W GN +L +V+E + + S NG + +S +P H+ + + + S Sbjct: 472 INTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEVTISSVPNHIVQDVEEIEGES 531 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 R + EK+ I ++T G ++ + +L I R+TL+ K+ Q+ + Sbjct: 532 HHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILNIKRSTLYYKLNQYDL 583 >UniRef50_A8MEG8 Putative sigma54 specific transcriptional regulator n=3 Tax=Clostridiaceae RepID=A8MEG8_ALKOO Length = 700 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 116/399 (29%), Positives = 189/399 (47%), Gaps = 40/399 (10%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL---RLDATASQGRAITE 250 +L TN QL+ LL+ +DDG+I D +G++ N A ++ R D G Sbjct: 203 ILGMTNMSEGQLDILLQVIDDGLIGIDAKGSIFLYNENAGEIVGYTREDVVHRDG----- 257 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQF------IDAVITLKPIIETQ----GTSFI 300 +L P + P K V S + +D ++++ PI+ ++ + I Sbjct: 258 ILLFPQI---------PFKDVLENLRSVREILIKINGVDLIVSVDPIVHSERLYGAVAII 308 Query: 301 LLLHPVE-QMRQLMTSQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 E Q +L +GK + F + + ++ I ++ ARS+ +L+ GE Sbjct: 309 RRFSDAESQQHRLRAKVIGKGHKAKYNFGDIVGESENIKKTIEIAKRMARSNSSILITGE 368 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRL 412 G GK L +QAIHN S+R ++A+NC ++ L E G + + G+ Sbjct: 369 SGTGKELFAQAIHNNSKRRNFQFVAINCGALPESLLESELFGYEEGAFTGARKGGKSGLF 428 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELAH GTLFL++I + LQ LL+V+++ + RL +I +D+++IA T +L ++ Sbjct: 429 ELAHNGTLFLDEIGEMPPSLQMRLLRVLQEREVMRLGGDSIINVDIRIIAATNKNLKEMM 488 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 F LYY L+ + IPPLR R+ I LV ++ R+ F + A L+ Sbjct: 489 ATGGFREDLYYRLNVLPLKIPPLRSRKKDIETLV-DRFRA---EFRGSFVLSQMAKDVLL 544 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE 571 S W GN EL + IE L +S + + V DLP +F E Sbjct: 545 SYNWKGNVRELKNYIEYL-VSLEIKEVDVKDLPFEIFEE 582 >UniRef50_A8ZVL8 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=A8ZVL8_DESOH Length = 449 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 10/305 (3%) Query: 333 QTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL 392 + R ++ Q + VL+ G+ G GK L+++AIH S R+AGP++A NC + + Sbjct: 149 RIREVVSIIGQIGPTECNVLITGDSGSGKELVARAIHAASRRSAGPFLAFNCGALSETLI 208 Query: 393 AEEFIGGDR---TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G ++ T E+ + +E A GGTLFL++I + +Q LL+V+++G + R+ Sbjct: 209 DNELFGHEKGAFTGAESRGIGLVEAASGGTLFLDEIGEMPTAMQVKLLRVLQEGELMRVG 268 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 R +P+DV++++ T AD+ V + F + LY+ ++ I +P L RR IP L + Sbjct: 269 GSRPVPVDVRIVSATAADIKAAVGEGIFRKDLYFRINVVNIKLPGLAERREDIPLLAYHI 328 Query: 510 LRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL 568 L L ++ ++ I + A+A L A+PGN EL +++E IR DLP L Sbjct: 329 LSRLNRQGGKNIQAISEKAMALLSGYAFPGNVRELENILERAVAICQGEIIRECDLPPDL 388 Query: 569 FTEQATDDVSATRL--STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + + A R T ++ AE+E++ + + ++TGG + +LGI R +LWRKMK Sbjct: 389 VALE----LQAYRPPDETFMTLAELERDYMAHLLKITGGARSRTAEILGIDRASLWRKMK 444 Query: 627 QHGID 631 ++ ++ Sbjct: 445 KYDLE 449 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P45512 Glycerol metabolism operon regulatory protein n=... 738 0.0 UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 736 0.0 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 720 0.0 UniRef50_P26047 Signal-transduction and transcriptional-control ... 718 0.0 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 712 0.0 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 706 0.0 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 706 0.0 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 704 0.0 UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clo... 703 0.0 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 701 0.0 UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Ta... 677 0.0 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 676 0.0 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 671 0.0 UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional r... 671 0.0 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 663 0.0 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 660 0.0 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 655 0.0 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 654 0.0 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 653 0.0 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 653 0.0 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 651 0.0 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 645 0.0 UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory p... 645 0.0 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 644 0.0 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 641 0.0 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 638 0.0 UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulato... 637 0.0 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 635 e-180 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 633 e-180 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 632 e-179 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 629 e-179 UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular orga... 629 e-179 UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional r... 628 e-178 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 625 e-177 UniRef50_A5N2U4 Predicted signal transduction and transcriptiona... 625 e-177 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 625 e-177 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 623 e-177 UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional r... 621 e-176 UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional r... 619 e-175 UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional r... 618 e-175 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 617 e-175 UniRef50_Q6AR13 Related to sigma54-dependent transcriptional reg... 616 e-175 UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax... 614 e-174 UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibri... 611 e-173 UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4... 610 e-173 UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n... 609 e-173 UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis ... 607 e-172 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 605 e-171 UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2... 605 e-171 UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional r... 600 e-170 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 596 e-169 UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional r... 596 e-168 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 593 e-168 UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing pr... 587 e-166 UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional r... 587 e-166 UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas Re... 584 e-165 UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional r... 583 e-165 UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escheri... 582 e-164 UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional r... 579 e-163 UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 T... 577 e-163 UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional r... 575 e-162 UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional r... 574 e-162 UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional r... 573 e-162 UniRef50_Q47ZM3 Acetoin catabolism regulatory protein n=2 Tax=Al... 568 e-160 UniRef50_P28614 Acetoin catabolism regulatory protein n=4 Tax=Pr... 567 e-160 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 562 e-158 UniRef50_A9BXK1 GAF modulated sigma54 specific transcriptional r... 557 e-157 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 550 e-155 UniRef50_D1RT04 Transcriptional regulatory protein n=1 Tax=Serra... 550 e-155 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 549 e-154 UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR... 548 e-154 UniRef50_B1Y0Y8 GAF modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 545 e-153 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 545 e-153 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 544 e-153 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 543 e-152 UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteob... 542 e-152 UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Brady... 541 e-152 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 539 e-151 UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional r... 538 e-151 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 538 e-151 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 538 e-151 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 535 e-150 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 532 e-149 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 529 e-148 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 528 e-148 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 528 e-148 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 526 e-148 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 526 e-147 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 526 e-147 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 526 e-147 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 525 e-147 UniRef50_A9BZJ5 GAF modulated sigma54 specific transcriptional r... 525 e-147 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 524 e-147 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_D0LRM2 GAF modulated sigma54 specific transcriptional r... 521 e-146 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 521 e-146 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 519 e-145 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 519 e-145 UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol me... 518 e-145 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 518 e-145 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 518 e-145 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 518 e-145 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 517 e-145 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 517 e-145 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 517 e-145 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 517 e-145 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 516 e-145 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 516 e-145 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 516 e-144 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 516 e-144 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 515 e-144 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 513 e-144 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 511 e-143 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 511 e-143 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 510 e-143 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 509 e-142 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 509 e-142 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 509 e-142 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 509 e-142 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 508 e-142 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 508 e-142 UniRef50_A6CUY8 Hypothetical sigma-54 dependent transcriptional ... 508 e-142 UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID... 507 e-142 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 507 e-142 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 506 e-141 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 506 e-141 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 506 e-141 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 506 e-141 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 505 e-141 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 505 e-141 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 505 e-141 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 505 e-141 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 503 e-141 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 503 e-140 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 502 e-140 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 502 e-140 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 502 e-140 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 502 e-140 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 501 e-140 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 501 e-140 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 501 e-140 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 501 e-140 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 501 e-140 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 501 e-140 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 500 e-140 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 500 e-140 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 500 e-140 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 500 e-139 UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regula... 500 e-139 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 499 e-139 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 499 e-139 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 499 e-139 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 499 e-139 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 499 e-139 UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID... 499 e-139 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 498 e-139 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 498 e-139 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 497 e-139 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 497 e-139 UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1... 497 e-139 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 497 e-139 UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis ... 496 e-139 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 496 e-139 UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1... 495 e-138 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 495 e-138 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 495 e-138 UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n... 495 e-138 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 495 e-138 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 495 e-138 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 494 e-138 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 493 e-138 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 493 e-138 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 493 e-138 UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with ... 493 e-137 UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostri... 493 e-137 UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_C1MAF5 Signal-transduction and transcriptional-control ... 492 e-137 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 492 e-137 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 492 e-137 UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis ... 491 e-137 UniRef50_P38022 Arginine utilization regulatory protein rocR n=8... 491 e-137 UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus Re... 490 e-137 UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 T... 490 e-137 UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Cl... 490 e-137 UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostri... 490 e-136 UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding respo... 489 e-136 UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional r... 489 e-136 UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 T... 489 e-136 Sequences not found previously or not previously below threshold: UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=7... 603 e-171 UniRef50_A5G7C5 GAF modulated sigma54 specific transcriptional r... 599 e-169 UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional r... 599 e-169 UniRef50_B2IEK7 GAF modulated sigma54 specific transcriptional r... 583 e-165 UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional r... 580 e-164 UniRef50_A1VK76 GAF modulated sigma54 specific transcriptional r... 576 e-163 UniRef50_Q0JZT0 Transcriptional regulator, PspF-family n=2 Tax=B... 572 e-161 UniRef50_A1AMU4 GAF modulated sigma54 specific transcriptional r... 572 e-161 UniRef50_C4KAI6 GAF modulated sigma54 specific transcriptional r... 569 e-160 UniRef50_A1TS58 GAF modulated sigma54 specific transcriptional r... 568 e-160 UniRef50_C0Z5M5 Acetoin catabolism regulatory protein n=2 Tax=Ba... 567 e-160 UniRef50_Q3A7P8 GAF modulated sigma54 specific transcriptional r... 567 e-160 UniRef50_A7MAQ9 BmoR n=1 Tax=Thauera butanivorans RepID=A7MAQ9_9... 566 e-160 UniRef50_Q2RVW2 Sigma54 Specific Transcriptional Regulator conta... 563 e-158 UniRef50_Q3JGJ2 Sigma-54 activated regulatory protein n=63 Tax=B... 562 e-158 UniRef50_A8I2P3 Transcriptional regulator n=6 Tax=Proteobacteria... 562 e-158 UniRef50_Q1H4H3 GAF modulated sigma54 specific transcriptional r... 561 e-158 UniRef50_C9YDA0 Putative uncharacterized protein n=1 Tax=Curviba... 558 e-157 UniRef50_Q2BKZ6 Sigma-54 dependent transcriptional regulator n=1... 555 e-156 UniRef50_A2SCN8 Transcriptional regulator AcoR n=5 Tax=Betaprote... 550 e-155 UniRef50_B2JX43 GAF modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_D0FRF9 Transcriptional regulator n=2 Tax=Erwinia pyrifo... 546 e-154 UniRef50_C8Q8H1 GAF modulated sigma54 specific transcriptional r... 544 e-153 UniRef50_B1XZ38 GAF modulated sigma54 specific transcriptional r... 542 e-152 UniRef50_A1BBZ5 GAF modulated sigma54 specific transcriptional r... 540 e-152 UniRef50_Q02SW3 Transcriptional regulator AcoR n=12 Tax=Pseudomo... 535 e-150 UniRef50_A5G298 GAF modulated sigma54 specific transcriptional r... 534 e-150 UniRef50_B1J8J4 GAF modulated sigma54 specific transcriptional r... 531 e-149 UniRef50_C5CW42 GAF modulated sigma54 specific transcriptional r... 531 e-149 UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional ... 531 e-149 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 525 e-147 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 522 e-146 UniRef50_A8VUU9 Alanine dehydrogenase n=1 Tax=Bacillus selenitir... 520 e-146 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 513 e-143 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 512 e-143 UniRef50_B1J9J9 GAF modulated sigma54 specific transcriptional r... 512 e-143 UniRef50_B5EP01 Sigma54 specific transcriptional regulator, Fis ... 506 e-141 UniRef50_B2TFZ7 GAF modulated sigma54 specific transcriptional r... 506 e-141 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 503 e-141 UniRef50_D0I9V7 Sigma-54 dependent transcriptional regulator n=1... 503 e-141 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 501 e-140 UniRef50_Q2S6Z3 Transcriptional activator of acetoin/glycerol me... 500 e-140 UniRef50_B1Y1U6 GAF modulated sigma54 specific transcriptional r... 500 e-140 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 498 e-139 UniRef50_Q3A203 Two component signal transduction response regul... 498 e-139 UniRef50_B3DWD7 Transcriptional activator of acetoin/glycerol me... 497 e-139 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 496 e-138 UniRef50_Q7MCP4 Sigma-54 dependent transcriptional regulator n=4... 495 e-138 UniRef50_A1K9F7 Sigma-54-dependent transcriptional regulator n=1... 493 e-138 UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional r... 490 e-137 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 490 e-137 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 490 e-137 UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional r... 489 e-136 >UniRef50_P45512 Glycerol metabolism operon regulatory protein n=68 Tax=Enterobacteriaceae RepID=DHAR_CITFR Length = 641 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 457/638 (71%), Positives = 538/638 (84%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 M+ + G+ +S +IA SW RC+K M+RETW PHQAQG+TF SI RRK A+LT+ QAA Sbjct: 1 MTTHTQDIGKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAA 60 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 LEDAWE+M R CAL ILDE+ACILSR GDPQT++QL+ LGF DG+YCAE IIG+CALSL Sbjct: 61 LEDAWEFMDGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSL 120 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 A + GQ KT DQHFKQ L W+FC+TP+FD+ GRL G+I+L C VE +DL LTLA Sbjct: 121 ATMPGQPTKTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHECVSDLSLTLA 180 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 IAREVGN LLTDSLLAE+NRHLNQ+ LLESMDDGV++W+EQG LQF+NA+AA +L LDA Sbjct: 181 IAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDA 240 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 ASQG+ I +LL LP +L++AIK A L HVE TFESQHQF+DAVITLKPI+E QG SFI Sbjct: 241 QASQGKNINDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFI 300 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 LLLHPVEQMRQLMTSQLGKVSHTF M DDP+TRRLIHFGRQAAR SFP+LLCGEEGVG Sbjct: 301 LLLHPVEQMRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVG 360 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL 420 K LLSQAIHNESERA+GPYIAVNC+LY ++ L ++F+G TD+ENGRLSRLELA+GGTL Sbjct: 361 KELLSQAIHNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTL 420 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FLEKIEYLA ELQSALLQVIKQGV+TRLDARRLIP+DVKVIATTT DLA LVEQNRFSRQ Sbjct: 421 FLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQ 480 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYYALH+FEI IPPLR RR SIP+L+ +L SL+KRFS+ LKIDDDALA+LV+ +WPGND Sbjct: 481 LYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGND 540 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 FEL S+IEN+A+SSDNG IR+S+LP++LF E+ + +++ L SL+F +EKEAII+AA Sbjct: 541 FELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAA 600 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 +VT GR+QEMS LL IGRTTLWRKMKQ+ IDA QFKR+ Sbjct: 601 RVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRK 638 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 736 bits (1902), Expect = 0.0, Method: Composition-based stats. Identities = 164/632 (25%), Positives = 301/632 (47%), Gaps = 16/632 (2%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 N + P+I SW R K M P + G + ++++ +E + Sbjct: 19 NELDPDLPPMIRDSWLRSKKAMVD-----PFRPYGWIKEIDNEKYRSLIDWSLPLMEGLY 73 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 + + + +E +L GD + L + +GF G +E ++GT A+ + Sbjct: 74 SIVKGSGFLVILCNENGQLLLSIGDREPLARAEEIGFIAGADWSEQVMGTNAIGTSIAID 133 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 + ++ A++H+ ++ +W A P+ D GR+ G + ++ P E+ + L + ++ + + Sbjct: 134 RPIQVFAEEHYTKICQSWTCSAAPIHDPDGRIIGVLNMSGPYEKVHSHTLGMVVSAVKAI 193 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L + L A +M +G++ D G + N Q ++ R+ + Sbjct: 194 EYQLKLHENAEKNVMMQRFLEATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLEE 253 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLH 304 + + +L P++ + + + + + ++ PI E + ++++ Sbjct: 254 KKLDDLFNDPSICSNHPLHLQN-QELHLSVKPSNAVHHVLVDKIPIYEKKERIGSMIIVK 312 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 +E++RQ + G + TFA M P ++ R AA + VL+ GE G GK + Sbjct: 313 EIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKEM 372 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENG-RLSRLELAHGGT 419 ++QAIHNES+R P+IA+NC L E G G T + G + ELA+GGT Sbjct: 373 VAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGGT 432 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I +++E+Q LL+VI++ + R+ ++IP+DV++IA T DL V++ F Sbjct: 433 LFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFRE 492 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPG 538 L++ L+ I +PPLR R+ IP LV + + L + +I D L L+ WPG Sbjct: 493 DLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQYDWPG 552 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL ++IE + + +DLPE +F + V R + +S E++K++II Sbjct: 553 NIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQV---RENVDISRNEIKKQSIIE 609 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + G I + + LGI R+T +R+M + I Sbjct: 610 ALKQCNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 720 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 160/647 (24%), Positives = 298/647 (46%), Gaps = 25/647 (3%) Query: 8 DGRGISPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + IA +WERC +L N + I + K ++ + + + Sbjct: 26 DREALPAEIADAWERCARLGANPYAGNSKRRLAESEVQEILQHHKELIDVARPFMAKLHR 85 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++A + + +E ++ GD T++ + G E IG + A + + Sbjct: 86 FVAGSGFVVLLANERGYLMETIGDQDTIRGAENIDLLPGACWREEEIGNNGVGTAVVLKK 145 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +H+ + +W P+ + ++ G + ++ PVE+T L + +A + Sbjct: 146 PVQVSGKEHYCRKHHSWTCSGAPILNEDKQVIGILEMSGPVEKTHLHTLGMVVAAVEAIS 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + L E N+L + ++ DG++ D QG + IN R+L ++ G Sbjct: 206 DQLRIQQKNRELLLLSNRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGI 265 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLH 304 + EL +++ + + E T + + +++ K I++ QG ++ ++ Sbjct: 266 PVKELFEPGQRVEEMLDSGRDFSYSELTL-GIGEAVQCLVSGKAIMDEQGKVNGGVIFIN 324 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P+ ++ L+ G + S F+ + + R++ AA S +LL GE G GK + Sbjct: 325 PINHIKSLVNRFSGAQASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEV 384 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGT 419 +QAIHN S R P+IAVNC L E G G T GR + ELA GGT Sbjct: 385 FAQAIHNASSRRDAPFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGT 444 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + + Q +LL+V+++ +TR+ ++IP+DV+VI + L VE+ F R Sbjct: 445 IFLDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRR 504 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 L+Y L+ IT+PPLR R+ IP L ++ L+ + ++ +++ + + L WPG Sbjct: 505 DLFYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPG 564 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD--DVSATRLSTSLSFAEVEKE-- 594 N EL +V+E + ++ RI LP+ + A +++ S LS + E+ Sbjct: 565 NVRELQNVVERMVNIAEESRISREHLPQEISHPAARSLKELANCEDSQLLSLS-TERRKR 623 Query: 595 ----------AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 I+ + GG + +++ LG+ R T++RK+KQ+ I Sbjct: 624 KEMEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIKQYRIK 670 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 718 bits (1855), Expect = 0.0, Method: Composition-based stats. Identities = 151/630 (23%), Positives = 290/630 (46%), Gaps = 16/630 (2%) Query: 13 SPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + +I S +RC+ + P + F I ++ KA++ + + +E + ++ Sbjct: 8 NEIIKKSHKRCSNYGIKIDIPCPSKILRDEEFNVIIQKNKALIEIARPFMEILYNFLKGS 67 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 +L+ ++ +L+ GD ++ +G +G +E GT + A +++ Sbjct: 68 GFSLYFTEKNGVVLTIIGDQDIIRDQIQMGIIEGADMSEKSAGTNGIGTAFAENISLQIS 127 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 ++HF +V W ++ + D G + G + L + L L +A + + N L Sbjct: 128 GEEHFIKVFQIWTCSSSVVHDEDGNIIGCLNLTGRRQLAHPHTLGLVVAAVKSIENHLKV 187 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 E + LN + +S++ G+ + D +G ++ IN A +L ++ + + + Sbjct: 188 KKTQNELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKSACDMLHINEEDVINKNVDTV 247 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQM 309 L + Q ++ + E + + + + I + PI + T + + ++ + Sbjct: 248 LDSWKHILQRLRNGQSYEDEEIMYSDKKKRFN--INVYPIKDKNSNITGMVGIFKDIQNV 305 Query: 310 RQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 L+ + + +TF + +RL + + S VL+ GE G GK L++Q+I Sbjct: 306 YNLVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSI 365 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGR-LSRLELAHGGTLFLEK 424 HN S R + ++A+NC + + E G + T + G + ELA+ GTLFL++ Sbjct: 366 HNNSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDE 425 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +++Q LL+V+++G ITR+ + + +DV++IA T +L +E F LYY Sbjct: 426 IGEMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYR 485 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFEL 543 L I +PPLR R G I L+ + L+ + + +I + L+S WPGN EL Sbjct: 486 LSVIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWPGNVREL 545 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL-SFAEVEKEAIINAAQV 602 + IEN+ + N E+ ++ + S L + S E+EK AI Sbjct: 546 ENCIENIVNMNGNTSFNF----ENRTIKKDVNCYSDVSLEYDMCSLEELEKRAISICINQ 601 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 GG I + +LGI R+TL+ K+K++ I Sbjct: 602 CGGNISKACRILGINRSTLYIKIKKYNIKV 631 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 155/625 (24%), Positives = 285/625 (45%), Gaps = 9/625 (1%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 I P +A SW+RC + R ++ + ++A+E+ + ++ Sbjct: 32 IRPEVANSWQRCRNYKVNPYDIGDQAVNQLELRERLHRNHHLVKIARSAMENLYTFVRGS 91 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D+ A +L GD + + + + G E GT A+ A + Q V+ + Sbjct: 92 GFEIVLSDQHAYLLEVVGDRDIISKGTKVQLCPGGNWHESSKGTNAIGTALMEKQPVQIL 151 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 A +HF + A P+FD +G + G + ++ A L + +A + L Sbjct: 152 AWEHFCRPNHFLTCSAAPIFDPEGEIVGVLNISGDYRYANAHTLGMVVAAVNAIEKQLCL 211 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + ++ LLES+ DG++S + G + +N+ ++ ++ A++G+ I + Sbjct: 212 HKVTSKLYISYKYSQTLLESISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKGKHINTV 271 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ-MR 310 + A + + + E E+Q + + + TL + +L ++ Sbjct: 272 MRQQAPILSLLATGEGYRDREILLENQGKKVFSSATLLLDDSGNTIGAVAVLRQARDALK 331 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 ++F + + P + R AA S +LL GE G GK L +Q+IHN Sbjct: 332 SRRAQHSSLPRYSFDDIIGESPAISEAKEWARIAANSGSTILLSGESGTGKELFAQSIHN 391 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIE 426 S GP+IA+NC +A + E G T + G + E A GTLFL++I Sbjct: 392 VSSFRNGPFIAINCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFESADRGTLFLDEIG 451 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + +Q+ +L+VI++ I+R+ + +++++IA+T +L V F L+Y L+ Sbjct: 452 DMPLTVQAKVLRVIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVLNGNFREDLFYRLN 511 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA-LARLVSCAWPGNDFELYS 545 + +PPLR R G IP + + + + R + + +DA +L S WPGN EL + Sbjct: 512 VLVVQVPPLRDRGGDIPLVACHLVEKISARMGKQRIVGEDAFWGKLASHNWPGNVRELEN 571 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 IE + SD+ + L HL + + +S E+EK+AI A + G Sbjct: 572 AIEQAVVRSDDSGVL---LARHLTFDVVESVAPTGGRAEIVSLTEMEKQAITAALHLYDG 628 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGI 630 IQ+ ++ LGIGR TL+RK++++GI Sbjct: 629 NIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 159/631 (25%), Positives = 295/631 (46%), Gaps = 14/631 (2%) Query: 16 IATSWERCNKLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 + S +R +G + +LT ++ +E+ + ++ Sbjct: 7 VKRSHQRSIDFGVEYNRMYSSKILKGNELQIKLEANRELLTTAKSFMEELYNFVEGSGFF 66 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 + D+ CIL GD + L L G Y E IGT A+ A G V+ ++ Sbjct: 67 AILTDQEGCILEVLGDDKVLAVSHGLEMIPGAYMDEEHIGTNAMGTALAEGIPVQISGEE 126 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 HF + W A P+ +S G GT+ L E + L + A A + +L + + Sbjct: 127 HFVKAYHRWTCSAAPIRNSIGEAIGTLNLTGYSEYVHSHTLGMVAAAANAIAYMLESKEV 186 Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + + +++S+D G+ + +G ++ IN A+ +L+ G +L+ Sbjct: 187 NNKLFLAKKSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGMEGIKLIEG 246 Query: 255 PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQL 312 A +Q++++ EA +++ I ++ PI++ + ++ +++MR+L Sbjct: 247 WAGVQESVESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCMIREIKKMRRL 306 Query: 313 MTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + +GK + +TF + D R++++ ++ + S VL+ GE G GK + +Q+IHN Sbjct: 307 VNKMIGKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSIHNH 366 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEY 427 SER P++A+NC + E G + T + G + ELA GGTLFL++I Sbjct: 367 SERRDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDEIGE 426 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + +++Q+ LL+V+++G + R+ + I +DV++IA T DL VE+N F LYY L+ Sbjct: 427 MPLDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYRLNV 486 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSV 546 + +PPLR R+ IP L++ + + + + D + ++++ W GN EL +V Sbjct: 487 LPLILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGNIRELENV 546 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 IENL S + + +L + + + S ++EK I G Sbjct: 547 IENLMNSGELNFLERVEL-----SSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKYEGN 601 Query: 607 IQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + + + LGIGR TL+RKM ++ ID + R Sbjct: 602 VSQAAEALGIGRNTLYRKMAKYKIDCSKMTR 632 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 706 bits (1824), Expect = 0.0, Method: Composition-based stats. Identities = 159/625 (25%), Positives = 280/625 (44%), Gaps = 9/625 (1%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 +S + A SW RC +L + +V + ++T+ +E+ + ++ Sbjct: 25 LSQIAANSWRRCLQLNVDPSRHVRVDMGARELKKRIEAHQDLVTVATPTMENIYNFVNDS 84 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D +L G+ +T + G E + GT A+ + + +K Sbjct: 85 GFQVVLSDNHGYLLKVLGERKTPCPSTLARLFPGANWNESLRGTNAIGTCLVERKPLKIH 144 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 A +HF + A P+F +G L + L+ L + +A A + N L Sbjct: 145 ASEHFFEENQTLTCSAAPIFSPEGELLAVLNLSGDHRYANDLALGMVVAGANAIENQLQL 204 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + + + +++SM +G++ D G + IN AR+L + A + G I+++ Sbjct: 205 HRVNTKLYASYKYSDTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIGLHISKM 264 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 A + ++ ++ E + + TL Q + +L P ++ Sbjct: 265 FGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGAVSVLRPRSSSKR 324 Query: 312 LM-TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + ++F M D ++ H +A+RS VL+ GE G GK L++Q IHN Sbjct: 325 SRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHN 384 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIE 426 S R P++AVNC + L E G + T + G+ ++E+A+GGTLFL++I Sbjct: 385 ASSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIG 444 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +++Q LL+++++ I R+ + I IDV++IA T +L V++ F + LYY L+ Sbjct: 445 DMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLN 504 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYS 545 ITIPPLR R +PAL + L RF + I + S WPGN EL + Sbjct: 505 VLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNIRELEN 564 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 VIE D+G + E + + EVE E ++ A +++ G Sbjct: 565 VIERAMNMVDDGDALTA---EMIDLDPVELPADHAIPDGVRPLKEVEMEMVVRALEMSRG 621 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGI 630 I S+LLGI R T++RK+K++ I Sbjct: 622 NIVHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 704 bits (1819), Expect = 0.0, Method: Composition-based stats. Identities = 160/637 (25%), Positives = 288/637 (45%), Gaps = 13/637 (2%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 + R I P + +SW+R K P K ++ + LE Sbjct: 52 DKVRIIRPEVLSSWKRSMKRGIDPYKLHPILLTQKNLEYRLEENKELIDIASPFLEAFIS 111 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + + +LD IL + G+ + L+ G G +E GT A++LAA+ G+ Sbjct: 112 NLKGSGFRVDLLDRDLYILKQFGEAEVLETAQKQGSCPGASRSEHATGTNAINLAAVLGR 171 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 ++ + +H+ L W A P+FD G L G + +A + L +T+A+ + + Sbjct: 172 PIQLVGPEHYNAQLQYWTCSAAPIFDENGELLGVVNVAGHYLKVHQHTLGMTVALGKAIE 231 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L L E + ++++S+ +G+++ D QG + +N A +L L + Sbjct: 232 FSLRQSRLRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKPQDVLNQ 291 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 +L + + +A + L + E F +++ A+ + P+ + + + + Sbjct: 292 PADAVLGQHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVLAVFKGL 351 Query: 307 EQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 R + + G K F + P+ ++++ RQAA VL+ GE G GK + + Sbjct: 352 SHARGFVKNMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGTGKEMFA 411 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLF 421 QAIHN S + GP++ +NC + E G + T + G+ + +LA GTLF Sbjct: 412 QAIHNASSSSNGPFVGINCAAIPAELIESELFGYEGGAFTGAKREGQPGKFQLAAHGTLF 471 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L+++ +++ +Q+ LL+V++ TR+ IP++ ++IA + DL V Q F L Sbjct: 472 LDEVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVRQGNFREDL 531 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 Y L+ I IPPLR R+ + L+ + R K+ I + A +++ WPGN Sbjct: 532 LYRLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKLKFEFTISEPARKLMMAYHWPGNVR 591 Query: 542 ELYSVIENLALSS---DNGRIRVSDLPEH--LFTEQATDDVSATRLSTSL---SFAEVEK 593 EL +VIE A+ + + I DL + + D A + + +EK Sbjct: 592 ELENVIERCAVMALSRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFDDNLESLEK 651 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A+ A + TGG I + LG+ R TL+RK+K++GI Sbjct: 652 RAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clostridium RepID=A5MZI8_CLOK5 Length = 656 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 158/644 (24%), Positives = 303/644 (47%), Gaps = 23/644 (3%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 FN + I P I +SW RC K + N P+ F +I KK + + + + Sbjct: 16 EFNEIPKDIKPDILSSWIRCKKYGVEKDNNPPNIIPKDEFDAILDEKKEFIEICLPIMLN 75 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 +E + ++ + DE A IL G+ + + Q L F +G E +GT A+ Sbjct: 76 LYEILKNTNYSIILTDENAVILKILGNEKIMAQNRDLDFLEGRRWKEEDVGTNAIGTCIY 135 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + ++T+ +H+ + W A+P+ DSKG + G I L+ E L + + + Sbjct: 136 LDKPIQTLGAEHYSKRQQKWTCSASPIHDSKGNIIGCIDLSGSFEDFHTHTLGIVVEASN 195 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + H S+ +G++ D L++ N +L +D Sbjct: 196 TIQEQFSVA-------EHRKWTEVAFNSIKEGILVIDNDFKLEYFNENICNILGIDKNQM 248 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILL 302 + LL IK+ + + + E T +++ ++ +++ P++ + T F++L Sbjct: 249 YKLFMKSLLKDVIKDMGDIKRLNKITYREITMYVKNRRVECNVSINPVVMNEKHTGFVIL 308 Query: 303 LHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + + +R ++ G + F ++ + + + +I R+ A++ VL+ GE G GK Sbjct: 309 VKKADTVRTMVNKIAGFSSKYDFDNILTQNARMKGIIEDARRIAKNDCTVLITGESGTGK 368 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L + +IHN S+R +GP++A+NC + E G + T + G + ELA+G Sbjct: 369 ELFAHSIHNGSKRCSGPFVAINCSALPKDLVESELFGYEKGSFTGASKEGNPGKFELANG 428 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GT+FL++I L +E+Q LL+V+ ITR+ + ++V+VIA T +L V+ F Sbjct: 429 GTIFLDEIGELPLEIQPKLLRVLDNHAITRIGGKYERDLNVRVIAATNRNLFKEVKLKNF 488 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAW 536 LY+ L+ F I + P+R RR I + L L ++ ++ ID++ + + + W Sbjct: 489 RSDLYFRLNVFNINLIPVRERREDIEMFIKFFLEKLAQKNKVKINNIDEEFMDVVKNYEW 548 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS---------LS 587 GN E+ +V++ + S+ GRI + LP ++ + + + S+ + Sbjct: 549 LGNVREIENVVQRVYYLSEKGRITKALLPGYIMNYKKSSTEDDMKFSSDSYNEFKPEIQT 608 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +VEK+ II A + G + S L+ +G++TL+RK+K++ ++ Sbjct: 609 LDQVEKQLIIKALRYCNGNVVNASKLINMGKSTLYRKIKKYNLE 652 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 701 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 168/635 (26%), Positives = 299/635 (47%), Gaps = 20/635 (3%) Query: 15 LIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 I SW+RC ++ V HQ +++ +K ++L + ++ +E++ Sbjct: 24 EIRHSWQRCREMDVDPYDGVSHQLLTPGQISALLGSQKLYISLVRHFMKQLYEFVKGSGF 83 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 +F+ + IL GDP+T + + + G E GT + A G+ V+ Sbjct: 84 IVFLANREGYILEALGDPETFKAAAQVNLIQGACWVEFAGGTNGIGTALAIGRPVQVSGC 143 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ Q L +W A PL+D G ++G + ++ P E+T L + +A A + L Sbjct: 144 EHYCQKLHSWTCSAAPLYDECGDISGVLQMSGPCEKTHPHTLGMVVASAEAIRKQLSVWQ 203 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 E QL+ L ++M DG + D G + +N A +V G + ++T Sbjct: 204 RNNELVLANAQLSHLFQTMSDGALVIDADGRVIQVNPVARKVFG---KELSGEKLNRIIT 260 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET--QGTSFILLLHPVEQMRQ 311 A I H K ++ ++ + ++A++T+KP+ + + ++ +P+ +M++ Sbjct: 261 A-ADSPDLISSTHSCKDLDVVLHTETEPVEALLTVKPLKDDNSDQSGAVVFFNPIRKMKK 319 Query: 312 LMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L+ G + + F+ + + + I+ R+AA + VL+ GE G GK LL+QAIHN Sbjct: 320 LVNRFGGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKELLAQAIHN 379 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKIE 426 S R GP++AVNC +A E G G T GR + E+A GGTL L++I Sbjct: 380 HSMRRNGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGTLLLDEIG 439 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + ++ Q+ LL+V++ +TRL + R IP+DV+VI T +L V + F + LYY L+ Sbjct: 440 DMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQDLYYRLN 499 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYS 545 I +PPLR R + L L+ + R R +D+ + L+ WPGN EL + Sbjct: 500 VTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPGNVRELEN 559 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA-------EVEKEAIIN 598 V+E + + + + + LP + E + T+ A E E+ +++ Sbjct: 560 VVERMIHTVEEETLHCAHLPREICCETPVGRALPDSVVTTQDAATLKQVVGEQERRLLVD 619 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 Q G I ++ + + R T++RKM + I Sbjct: 620 LLQRYQGNISLIAREMAVSRNTIYRKMHHYNISRD 654 >UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Tax=Clostridia RepID=A0Q2I8_CLONN Length = 659 Score = 677 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 150/646 (23%), Positives = 289/646 (44%), Gaps = 39/646 (6%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + IA SW RC + + ++++ + ++ +E + Sbjct: 25 VRKEIADSWMRCREYNVNPMNGRGVVKDDQFTVKKIQENIELISIAKPIMKGLYEIVKGS 84 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 E A+ + D+ +L GD L+++ L F G E ++GT A+ A + ++T+ Sbjct: 85 EFAIILTDKDGYVLETIGDNSMLKRMKELNFVKGALWNEEVVGTNAIGTAIYLDKPIQTI 144 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +H+ +W P+ + +G + G I ++ L + + A+ + Sbjct: 145 GAEHYCIEQHSWTCSGAPIHNEEGEVIGCINMSGNYYNAHPHTLGIVTSAAQSI------ 198 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 N +N S+ +G+I ++ ++ +N +AA++L + I ++ Sbjct: 199 -QKQLAVAVSSNLMNITFNSISEGIIVLNKNMKIKKVNGRAAQILNSNIDKLINTDIKDI 257 Query: 252 ---LTLPAVLQQAIKQAHPLKH----------------VEATFESQHQFIDAVITLKPI- 291 + A++ K + ++ E + I ++ + P+ Sbjct: 258 VKDIDFEAIISGKYKSFNSIERNFCVKRDEIQIDDKIYKENIKNINKKVIPCILDIIPMK 317 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 + + ++ Q+ +L+ +G K +TF + + +++I ++ A + Sbjct: 318 VHEKVIGIVITFTETGQIHKLVNKVIGYKAKYTFDDIITQNQSMKKMIERAKKIALNDCN 377 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-EN 406 +L+ GE G GK L++Q+IHN S+R GP++A+NC + EF G + T + Sbjct: 378 ILIEGESGTGKELIAQSIHNYSKRKTGPFVAINCASIPRELVESEFFGYEKGAFTGASKE 437 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G + ELA+GGT+FL++I L +++QS LL+V+ ITR+ ++V+VI T Sbjct: 438 GYTGKFELANGGTIFLDEIGELPLDVQSKLLRVLDNNKITRVGGNYEKQLNVRVIGATNR 497 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDD 525 L ++Q F +YY L I PL R+ I LVN + L+ + + + K+ Sbjct: 498 KLKEEIKQKNFRADVYYRLSVMNIKTIPLNDRKDDIEILVNYFINILDMKNNRKSEKVSK 557 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 + +L+S +W GN EL +VIE +D + +L E + E+ D ++ + Sbjct: 558 SYIKKLLSHSWGGNVRELRNVIERDYYLND-----IDELLESVKDEKENSDKQIEKIGIN 612 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 S VE EAI NA + G + LL IGR+TL+RK+K++ I+ Sbjct: 613 -SMDMVESEAIKNALKECNGNKVKACRLLNIGRSTLYRKIKKYNIN 657 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 282/630 (44%), Gaps = 18/630 (2%) Query: 13 SPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 I S ERC + + + ++ +E ++ Sbjct: 24 KSDIELSHERCERFSIDLHQVYSRKIISEGELQRRFTDNRNLIVTAAPYMEQLINFVKGF 83 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D CIL+ GD + L Q +L G + E IGT A+S+ S ++ Sbjct: 84 NFFMLLTDGEGCILNAIGDEKILSQAFSLKMIPGAFMDEKNIGTNAMSMVIDSKGPIQVS 143 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 HF + W A P+ DS G+L G + L +E + L + +A + + +L Sbjct: 144 GRDHFIEAYHKWTCSAAPIKDSHGKLIGVLNLTGYIECVHSHTLGMVIAASNAIEEMLRV 203 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA-TASQGRAITE 250 N + + L S+ +I+ D G ++ N +A + ++ + + E Sbjct: 204 KEYNKIQNINNKHIKNLFNSIPVAIITSDMNGKIKVCNNKALDMFGSNSINKLKAYEMNE 263 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 L+ ++ AI E + + + I + I +++ E+++ Sbjct: 264 LVENWDEIRNAIYLGESFSR-EVNIRTLRNNFRCNLMVSSIYNCE-EDDIEVVYVFEEVK 321 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 ++ G+ +TF + D +++ + ++ + S +L+ GE G GK + +Q+IHN Sbjct: 322 KIKRKNHGQAYYTFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHN 381 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTLFLEKIE 426 S R GP+IA+NC + E G + T + G + ELA GGT+ L++I Sbjct: 382 YSSRVDGPFIALNCGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIG 441 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +++Q+ LL+V+++GVIT++ + + IP+DV++IA T DL VE RF + LYY L+ Sbjct: 442 EMPLDMQTKLLRVVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLN 501 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYS 545 + +PPLR R+G IP ++ ++++ KR I ++ L + S WPGN EL + Sbjct: 502 VLPLFLPPLRERKGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELEN 561 Query: 546 VIENLALSSDNGRIRVSDLPE-HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 V+E + I +P + ++V SL EKE ++ + Sbjct: 562 VVELI--------INTESIPSGYFQNGNCYNEVLINISEDSLKLDFAEKEHLVKVLKKFK 613 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 G I + LGI R TL+ K+K++ I+ Q Sbjct: 614 GNITRSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 671 bits (1733), Expect = 0.0, Method: Composition-based stats. Identities = 171/627 (27%), Positives = 275/627 (43%), Gaps = 8/627 (1%) Query: 12 ISPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + P +A SW RC L +P A++ + ++ +E + Sbjct: 28 VRPEVAQSWLRCRGLGIDPRAPKLPVMLDARRLAAVREENRILIETALPFMEFLRTAVKG 87 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 L + + + +L GD L + G AE + GT A+SLA I + V+ Sbjct: 88 TGFILVLTERSGVVLEVFGDEDILAMARDNNYVPGCSRAEEVAGTNAISLALIEKRPVQL 147 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +H+ W A P+F +G L G + L+ + L + ++ A + L Sbjct: 148 TGAEHWNVRHHLWTCAAAPVFSPEGMLLGAVTLSGETTRAHRHTLGMVISAAEAIRERLR 207 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + E L ++L S+ + +I D G + IN A + L + A QG+ Sbjct: 208 EREMAEEKRGSDVLLASVLGSISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQGKPFVR 267 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ-GTSFILLLHPVEQM 309 L L Q + E + E VIT + + T IL L + Sbjct: 268 LFPSQPELAQLLPVRGDNAAFEVSSERPGGRGHFVITPYVMYANEAVTGAILALRERREF 327 Query: 310 RQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + G TF + + P R I R AAR + +L+ GE G GK L +Q+I Sbjct: 328 LNEVREFSGFNAVFTFDDILGESPALLRQIELARTAARQNTRILILGETGTGKELFAQSI 387 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEK 424 HN S R +GP++A+NC + E G G T + G++ +LELA GGT+FL++ Sbjct: 388 HNCSPRRSGPFVALNCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLELADGGTIFLDE 447 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + ++LQS LL+ +++G ITRL R I IDV+VIA DL F + LYY Sbjct: 448 INQMPLDLQSKLLRALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQDLYYR 507 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFEL 543 L E+ +PPLR R I + + L +L ++ L + A+ L WPGN EL Sbjct: 508 LSVVELALPPLRERGDDIALIARHLLDTLGEKIDKPALSLSPPAIELLRQYPWPGNVREL 567 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 +V+E A+ ++ I+ L + + + A S S ++ + I +A + Sbjct: 568 ENVLEMGAIMAEGSIIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSAIEEF 627 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGI 630 G + + LG+ R T++R+M+QHGI Sbjct: 628 NGNVDLVGRKLGLSRATVYRRMQQHGI 654 >UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NKW0_ROSCS Length = 674 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 208/637 (32%), Positives = 324/637 (50%), Gaps = 12/637 (1%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + P+IA SW+RC T A + ++ L + +ED ++++ Sbjct: 28 PALDPIIAMSWQRCILRCNPYTVADLPGISEAELADRRAKLADLIALARPIMEDIYQFVE 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + +LD +AC+L GD +Q ++LG G Y EG GT A LA V Sbjct: 88 GSGMIIVLLDASACVLDVLGDANVQRQAASLGLRPGAYWNEGCAGTNAFGLALYERCPVH 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 + +HF Q + A P++ +GR G + +AC A L A AR + + L Sbjct: 148 VIGAEHFFQRFHGLSVSAAPIYHWEGRPIGVLGMACLTSAGNGATLATVHAAARAIEHQL 207 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + L E N L+A++E++ DG I D+ G + IN AA++L + A+ GRA+ Sbjct: 208 HAEKLFNELNTQRTLLSAIVEAISDGFIVCDQAGLVVHINLCAAQILGVKREAAVGRALG 267 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-----IETQGTSFILLLH 304 + LP V+ +A++Q L E +F+ Q I +I+L PI FIL L Sbjct: 268 ASVELPPVVAEAMRQCVMLTDAEVSFQVQKVQIRCLISLIPIQWQLDRVNNVEGFILTLR 327 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 +EQ+ +++ +G + + TFA + + + AARSS PVL+ GE G GK + Sbjct: 328 RLEQVHRMVQRMVGARSNFTFASIIGSSHAINQARRQAQAAARSSVPVLIVGESGTGKGV 387 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGT 419 L++ IHNES RA GP++ VNC + + EF+G + G+ + ELAHGGT Sbjct: 388 LARVIHNESARAEGPFVTVNCRVLPRDLIVGEFLGYEIGAFHSNRLQGQPGKFELAHGGT 447 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 L LE+IE L +++Q+ALL+V++ G + RL R+I ++V++I TT+ +L LV + F Sbjct: 448 LHLEEIEALPLDMQTALLRVVETGEVVRLGGHRVICVNVRLIVTTSLNLERLVLRGDFRA 507 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYYA+ I + PLR R +P LV + L + ++ + I DA + +WPGN Sbjct: 508 DLYYAVSRMTIRLAPLRERTADLPLLVRDILERMHRQTGRAVSISYDAQQLMRCYSWPGN 567 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V+E A +DNG I V LP+ + + + + + E E EAI+ A Sbjct: 568 VRELENVLERAASLADNGMIDVWHLPDAIRGRPSETEPGYDQHVP--ALHEAEYEAIVRA 625 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 A+ G M+ +LGIGRTTLWRK+K + FK Sbjct: 626 ARACQGNATRMAQMLGIGRTTLWRKLKAANVSLDDFK 662 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 168/635 (26%), Positives = 278/635 (43%), Gaps = 20/635 (3%) Query: 8 DGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + I S R + R T + + + + K L A L + ++ Sbjct: 8 DSTILRQEIQASHARSKEYGVSRTTRKNQVKLTPLELSQRQAQNKIFLEAVIAQLSELFD 67 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++P + + ++D IL G + + G E +GT A+SL Sbjct: 68 LLSPDDFMVAVVDGEGYILHMFGSDNIKAKFAERNCAPGYRWTERDVGTTAISLCLERRI 127 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 AV+ H+ Q + A P+F G L G + ++ + L + + AR V Sbjct: 128 AVQLNDKDHYCQRAHGFTSSAAPVFGHAGNLQGILVVSGNSQLVHPHTLCMISSAARSVE 187 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L +E H+ L+A+LES G++ D QG + +N + ++L T G+ Sbjct: 188 RQLRILRRNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQ 245 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLH 304 ++ L L ++ + + E T ++ Q I + + +P++ + +L Sbjct: 246 EVSVLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQSMLGVVLEFE 305 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P++ +R+L + G K TF M RR ++AA S VLL GE G GK L Sbjct: 306 PIDSVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKEL 365 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGT 419 +QAIHN S R + P++ +NC L E G T + GR + ELAH GT Sbjct: 366 FAQAIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGT 425 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 + L++I + ++Q LL+V++ G + R+ AR+ +D ++IA T DL V RF Sbjct: 426 ILLDEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFRE 485 Query: 480 QLYYALHAFEITIPPLRMR-RGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYY L+ I IP LR R R I AL L + T ++ A+ L + WPG Sbjct: 486 DLYYRLNVLPIVIPALRERGRDDILALTEFFL---SRNRVTPPQLTVGAVKALENHPWPG 542 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + I+ + I + L +A+ + + E+E+ AI Sbjct: 543 NVRELENTIQRALHLCEENEIDAACL------GVPETAAAASSSTPRGTLEEIERLAIEQ 596 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + T G + E + LGI R TL+RK+K++ ++ G Sbjct: 597 TLEDTKGNMAETAKTLGISRATLYRKVKRYSLETG 631 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 660 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 168/644 (26%), Positives = 304/644 (47%), Gaps = 37/644 (5%) Query: 10 RGISPLIATSWERCN-KLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + + P I SW R + + ++ P Q + F + ++K ++ + + Sbjct: 22 KEVRPEIVESWIRSSENGLDPRHYDYPPQMDPLMFEQLLKKKALLIQASTPFIHHLENML 81 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFND--GTYCAEGIIGTCALSLAAISGQ 126 + EC + I DE ILS ++ L GF GT E IGTC+ + + Sbjct: 82 SHVECYIIISDEQGVILSV------VKALGGNGFKLEAGTIWTEKTIGTCSHGMCILLKS 135 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTT-AADLPLTLAIAREV 185 ++ +HF + N A + P+FD G L GT+ + P ++ + L L +++A + Sbjct: 136 PIQLCGPEHFSHIFENIACSSAPIFDENGNLEGTLTITSPNLRSHNSQTLGLAISMAMGI 195 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 +A LE+ ++ ++ D+ G + N A +++ L G Sbjct: 196 QKQFQIA-------LQNEIFDAALENTEEIMLFSDDDGKIIRTNMNALKIIELFGRDLIG 248 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLH 304 + ++L + + + L H++ + + + + ++KPI + + + +I+LL Sbjct: 249 SQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYTKKKL-FLTSIKPIKSKDKISGYIVLLK 307 Query: 305 PVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + +++ S V TF + PQ+ +L ++ A + +L+ GE G GK + Sbjct: 308 ETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMKLKSMAKKFAHFNSNILIQGESGTGKDV 367 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGT 419 +QAIH E R GPYIAVNC +A E G + T E G+ ++ELA+GGT Sbjct: 368 YAQAIHFE-NRPNGPYIAVNCAAIPQNLIASELFGYEGGAFTGAERQGKPGKIELANGGT 426 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +ELQ+ LL+V++ +I + R IP+D ++I T +L LV+ N+F Sbjct: 427 LFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLITATNKNLLDLVKNNQFRE 486 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPG 538 LYY + F++++PPLR R I L+ + +R I + A L+ WPG Sbjct: 487 DLYYRISVFKLSVPPLRERGSDIVQLIEHFIRIYSSNQGIDEPILSNSAKYLLLQYNWPG 546 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-----------LSTSLS 587 N +L + I S+ G IR +LPE + + Q ++ + L + S Sbjct: 547 NVRQLQNTISYAVCMSNEGIIRPENLPEEILSYQPPSGLTLAQPEPEPSPNEIILDNTPS 606 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E+EK+AI+ A + I+ + +LG+ ++TL+RK+K++ I Sbjct: 607 MKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIKEYEIS 650 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 143/634 (22%), Positives = 277/634 (43%), Gaps = 36/634 (5%) Query: 9 GRGISPLIATSWERCN-KLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + +SP+I SW+R + + + + ++ G+ L + + Sbjct: 15 PQEVSPVIYRSWQRSKQRELSHKRVYNDEILPAALLNERCLEHEDLVRAGKPVLPYLYRF 74 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + + + D+ IL GDP + + + + G +E + GT A+ + Sbjct: 75 LEGSNNIVMLCDDQGYILDSLGDPPFINKAQQVHLSPGANWSEAVRGTNAIGTVLVEKVP 134 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP--VEQTTAADLPLTLAIAREV 185 ++ + +H+ + A P+ ++ G + G + ++ +E+ + L A+ + Sbjct: 135 LQVLGWEHYVEQNHVLNCWAAPICNADGDVVGVLDVSGEAGIERGMERLAEVVLMGAKLI 194 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L L + + + E M DG I+ D +G + IN + A++L G Sbjct: 195 EQSLHLTELQRDFHFARQGIEKAGEMMRDGFIAIDSRGIITEINREGAKLLGRKREELVG 254 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLL 303 ++ + ++ + + + L + + QG I +L Sbjct: 255 HLAADVFD----------NRRWSFNGKSLYMQSSESDNLTSRLVKVTDEQGAPMGAIGVL 304 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P + + + T+ + +AA++S VL+ GE G GK + Sbjct: 305 SPAPREERSQETMW----------VGRSQATQSVFSRADKAAQTSSTVLIQGESGTGKEI 354 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENG-RLSRLELAHGGT 419 +++ +H +S R P++A+NC + E G G T + G + E+A GGT Sbjct: 355 VARYLHQQSPRHNKPFVAINCAAIPATLIESELFGYADGAFTGAKKGGAPGKFEVAQGGT 414 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + +Q++LL+V+++ + R+ R P+DV+V+A T DL+ +EQ F Sbjct: 415 VFLDEIGDMPSNVQASLLRVLQEREVVRIGDSRPRPVDVRVVAATNRDLSTRIEQGDFRL 474 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPG 538 LYY L I +PPL R I LV ++ + + + + D+ L++ WPG Sbjct: 475 DLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVKKICRASGREPMGVTDEVYEALLNYHWPG 534 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + +E++ +++ + DLP + +VSA +L + K+AI+ Sbjct: 535 NIRELENCMESMVAMAEHSYLTTDDLPAEI-----AKNVSAVSCGETL-LEQQTKKAIMQ 588 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 A T G+I + LLGIGRTTL+RK+++ GI + Sbjct: 589 ALAETNGKIAPAARLLGIGRTTLYRKIEELGIKS 622 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 654 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 167/656 (25%), Positives = 296/656 (45%), Gaps = 43/656 (6%) Query: 11 GISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEY-M 68 IS +A SW R ++ A + + ++ + + +E + + Sbjct: 48 DISNEVAESWLRSRDRGIDPYNSMSKPYPNSREHAEKIVKNRPLIEITKPLMEKFRDMAV 107 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 P L++ D T L + GD + +G E IGTCA ++ + + Sbjct: 108 LPSGFILYLCDYTGAFLLQAGDMVRVP-------TEGVAWNESTIGTCAHTICMELKKPI 160 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVE---------QTTAADLPLTL 179 + + +H+ L N A P+ D G++ +I L P+E + L L Sbjct: 161 QILGPEHYCVGLHNIVGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSHTLGLIT 220 Query: 180 AIAREVGNLLLTDS--------------LLAETNRHLNQLNALLESMDDGVISWDEQGNL 225 A+A+ + L + ++ E N ++ L LE MD+G+I+ D G + Sbjct: 221 ALAKAIETQLKLNQTNELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITLDPSGRI 280 Query: 226 QFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV 285 +N + R+ ++ + I E L + + I + +E + + Sbjct: 281 INMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALITAGKSVD-IEENLVIGNDEQPYI 339 Query: 286 ITLKPIIET---QGTSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFG 341 I ++P++ Q + +L L+ V+++ ++ G +++F + + + ++ + Sbjct: 340 INIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIKKAVSIA 399 Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD- 400 R+ A SS VLL GE G GK L +QAIHN S GP++AVNC + E G + Sbjct: 400 RRFATSSENVLLMGESGTGKELFAQAIHNHSC-PLGPFMAVNCAAMPRELIESELFGYEG 458 Query: 401 --RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T E GR ++ELAHGGTLFL++I + +ELQ+ LL+ ++ I R+ RR +D Sbjct: 459 GSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGRRYKKVD 518 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 ++IA T +L +V++ ++ LY+ L ITIP LR R+ I L +++ ++ Sbjct: 519 FRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIKNYCQKQ 578 Query: 518 S-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 KI AL ++ WPGN +L + + S+ N I LP+++ + + Sbjct: 579 GWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTDSLPQYILLDSSPFQ 638 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + SLS +EK AI A I + + LLGI R+TL+RK+K +G + Sbjct: 639 DEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKDYGFEY 694 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 181/633 (28%), Positives = 280/633 (44%), Gaps = 22/633 (3%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 P+I SW+RC + A + ++ + ++ + Sbjct: 36 RPVILQSWQRCRRAGFPADTLALCPIDAAGLARSVADNRELVDTAKRVMDRLAHSIHLSS 95 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFN-DGTYCAEGIIGTCALSLAAISGQAVKTM 131 + ++D T +L + T + L+++ + G C E +GT + L + + V M Sbjct: 96 SVVTLVDTTGLVLHVSA---TREDLASVPYGEPGRRCDEATLGTNGMGLCLVERRPVHVM 152 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +HF L + A P+ DS GR G + LA E L L A A + L Sbjct: 153 GAEHFSSSLHYLSCSAAPIHDSTGRFLGALNLAISTENFHQHTLGLVEAAAHAIEEHLRL 212 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 +L+A +LE +DDGV G + +N QA +L L GR I Sbjct: 213 RALIASQR-------VILELLDDGVAVLGADGTIVSLNGQACSMLGLSP-DVVGRDIRSF 264 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 + VL+ + E TF + ++ P + IL L +MR+ Sbjct: 265 VRESEVLRAILADRQTFHDREVTFRLVQGELSCALSCAPFADG---GVILTLRETRRMRK 321 Query: 312 LMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 G K +TF H+ R + R AA+ LL GE G GK L +QA+HN Sbjct: 322 YAARVAGAKAVYTFEHILGQSKALREAVRLARVAAQGDATTLLLGESGTGKELFAQAVHN 381 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIE 426 R GP++ VNC + E G + + G + ELA GGTLFL++I Sbjct: 382 AGARRKGPFVVVNCGALPRNLVQSELFGYVAGAFSGALKEGSPGKFELADGGTLFLDEIG 441 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +E Q +LL+++++ +TRL + +DV++IA T DLA+ V N F LYY L+ Sbjct: 442 EMPLEAQVSLLRLLQENEVTRLGGKEARRVDVRIIAATNKDLALAVRNNAFRGDLYYRLN 501 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYS 545 I IPPLR R G +P L L L+I +ALA L + WPGN EL + Sbjct: 502 VLSIAIPPLRQREGDVPLLTRLFLDKFTASLGKPELEISREALAALAAHHWPGNVRELEN 561 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 IE L + + RI ++DLP+ + T+ +A +S +++ I+ + TGG Sbjct: 562 CIERLVNVACSSRIDIADLPQDVMTDMLRGRPAAPG-EAGMSLKRIQRALILETLRETGG 620 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 + S LL I RTTL+ K+KQ+GI A F+ + Sbjct: 621 NFRRASNLLNISRTTLYAKLKQYGISADTFRDQ 653 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 653 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 172/640 (26%), Positives = 306/640 (47%), Gaps = 22/640 (3%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 I +A SW + F + +K ++ + + E + Sbjct: 52 IPREVAESWIVAKNQHLDPYVKSFEVLLEANKFEKVIAKKADLVETASNYIHNFHEILNY 111 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + DE +L G + ++ + L + E IIGT A +L + ++ Sbjct: 112 SNFIMVLTDENGVVLLIEGSKKEIEAFNKLNIRLSSLLNEKIIGTSAHTLCIRHRKPIQF 171 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA-----CPVEQTTAADLPLTLAIAREV 185 + ++ +L + ATP+F+ G + GT+ + ++ A L +A+ + Sbjct: 172 IGPYNYSMILQDNISSATPIFNDHGSVIGTLVVVQMLARKDMQNIQAHSLGWVMAMGYAI 231 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA-SQ 244 NLL L A L +DDGVI+ +E + IN + +L + Sbjct: 232 ENLLELKKQNNSMTLMNGTLEATLSLIDDGVITVNENCYISHINKEGINILASNPQEKII 291 Query: 245 GRAITELLTLPA--VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG---TSF 299 GR ++E + ++ ++I + ++ E F ++ + ++ ++PI + QG + Sbjct: 292 GRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRDTQYLLNIRPIADGQGKYNSGA 351 Query: 300 ILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 ++ L +++ +++ ++ G S F + + I + AR+ + VLL GE G Sbjct: 352 VIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSLAKSIQIAQNVARTGYNVLLIGESG 411 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLEL 414 GK L +Q+IHN S +A GP++AVNC + E G + T NGR ++EL Sbjct: 412 TGKELFAQSIHN-SYKADGPFVAVNCASLPRNLIESELFGYEGGTFTGADRNGRPGKIEL 470 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A+GGTLFL++I + +E+Q LL+V+++ +TRL R IP+D +VIA T +L+++V++ Sbjct: 471 ANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSRGIPVDFRVIAATNKNLSLMVKE 530 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVS 533 F LY+ L F+ITIPPLR R + L + + K+ + + K+ + ++ Sbjct: 531 KTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFIEDISKKLMSEVPKLSPASYQKIKE 590 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 +WPGN +L + + S NG I +S+LP+ + + TR L+ AE+EK Sbjct: 591 YSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDEMTSNDYFRTKVNTR---KLTLAEIEK 647 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 E I A TG E S +LGIGRTT++RK+K++GID Sbjct: 648 EVIFEALSQTGNDASEASRILGIGRTTIYRKLKEYGIDIK 687 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 651 bits (1681), Expect = 0.0, Method: Composition-based stats. Identities = 157/577 (27%), Positives = 252/577 (43%), Gaps = 9/577 (1%) Query: 61 LEDAWEYMAPRECALFILDETACILSRNGD-PQTLQQLSALGFNDGTYCAEGIIGTCALS 119 +E ++ E IL G+ +T+ F G E +GT + Sbjct: 1 MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIG 60 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 A + GQA+ +HF + L +W +P+F +G+ G I L+ P + L + Sbjct: 61 TAMVIGQALDVTGAEHFSRGLHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIV 120 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 + A + N L ET + LE+ D ++ D G L +N + +VL Sbjct: 121 SSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWK 180 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 GR E+ + IK +K E +S+ + + PI + Sbjct: 181 KEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV 240 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 L+ F + + P R I + AA S PVL+ GE G Sbjct: 241 AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGT 300 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELA 415 GK L ++AIH S R GP++A+N + E G G T G+ + E A Sbjct: 301 GKDLFARAIHEASGRK-GPFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQA 359 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I + +++Q LL+V+++ + R+ + IP+DV++IA T +DL LV + Sbjct: 360 QGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREK 419 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSC 534 +F LY+ L I + PLR R+ IP L + + ++ + ID L + Sbjct: 420 KFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNY 479 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 WPGN EL +V E ++ I VS LP +L Q + S + ST S E+EK+ Sbjct: 480 DWPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSST--SLIELEKQ 537 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 I + GG I +++ LGI R TL+RK+ ++G+ Sbjct: 538 EISQLLEHYGGNITKVAKALGIARNTLYRKLYKYGLK 574 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 160/649 (24%), Positives = 297/649 (45%), Gaps = 31/649 (4%) Query: 6 NNDGRG---ISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAAL 61 N D R + +A SW R +V HQ + RK+ ++ + Sbjct: 20 NEDPRKSPYVPIEVAESWIRSKNYGVDPYKSVQAHQLSPKEKIVLAERKEMLIQTAVPLM 79 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + ++ + + DE IL GD + + + GT +E + GT A +L Sbjct: 80 KKYLSLLSASGYTMLLTDERGVILFIEGDKEKVPEEEF-----GTIVSEDVTGTNAHTLC 134 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIAL-----ACPVEQTTAADLP 176 AI + V+ + ++ L +TP+FD G L GT+ + + A L Sbjct: 135 AILRKPVQFIGPYNYCIHLDENIVSSTPIFDQYGDLIGTLTIYQLFAEKDIYNMQAHSLG 194 Query: 177 LTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL 236 ++A + N L E + L A L ++ G+I+ D++G IN + R+L Sbjct: 195 WITSMAYAIENQLKLKQANEELSLSNGTLEATLAVVEGGLITLDKRGMTAHINNEGCRIL 254 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI----- 291 + + G T+ L + +K + + E ++ V+++ PI Sbjct: 255 GITQEETLGEHFTKYLQNDKITG-ILKDGKAVSNHEIIIDNGETEKQYVMSIYPIVPQDT 313 Query: 292 --IETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 I + ++ L +E +++L+ G +++F + DP +++ RQ ++ Sbjct: 314 CNINDKLNGIVIHLSRIENIKKLVNDWRGASATYSFEDIQGKDPLFLKIVGIARQYSKLY 373 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE 405 VL+ GE G GK L +QAIHN S GP+I++NC + E G + T E Sbjct: 374 ANVLIHGESGTGKELFAQAIHNASC-PEGPFISINCSAMPRNLIESELFGYEGGAFTGAE 432 Query: 406 -NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 GR +ELA+ GTLFL++I + +E+Q LL+V+++ + R+ ++ IP+ +VI+ + Sbjct: 433 RKGRPGLIELANEGTLFLDEIGDMPLEIQPVLLRVLEEKKVMRVGGKKYIPVSFRVISAS 492 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-I 523 +L ++V++ F LYY L F++ IPPLR R I +L ++ ++ ++ + Sbjct: 493 NKNLNIMVQEKTFREDLYYRLAVFKLQIPPLRKRPDDIISLAQFFIKGTSQKVGRKMPVL 552 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS 583 A + AWPGN +L + + + I DLP+ + ++ + S Sbjct: 553 SKAAQKVIKEYAWPGNVRQLENSMVYAVSLTQGDVIGAEDLPDDITNPITPEN--SRLFS 610 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + +S E+E AI NA + T I + +LG+G++TL++K+K++ ++ Sbjct: 611 SVMSLREMEITAIKNALEQTNQNIANAANILGLGKSTLYKKLKEYHLEY 659 >UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGM0_9GAMM Length = 647 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 232/635 (36%), Positives = 364/635 (57%), Gaps = 14/635 (2%) Query: 5 FNNDGRGISPL-----IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQA 59 F R +SP I SW+RC + W+ P+ A G T S R ++ + + Sbjct: 18 FFQKHRWVSPEFTHSPIHDSWDRCIRQCSAYEWHKPNVASGNTLRSFVHRNNEIVAISET 77 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 LEDA+ + P++CALF+ D T C L+ G ++++Q LGF G + EG +GT A+S Sbjct: 78 VLEDAYRMLEPKDCALFVTDATGCSLAILGSEKSIEQAKQLGFKLGAFWTEGRVGTNAVS 137 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 L+ + Q + QHF Q L + A P+FD GRL + L +E +D L Sbjct: 138 LSLHTHQPETVFSAQHFNQNLHGYGCHAAPVFDIDGRLKACLLLFTDMENYQPSDAALIT 197 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 + A+EV +L+ ++ L+++N LNQ NA+LE MDDG+I+WD+ + +N QAA +L Sbjct: 198 SCAKEVSSLVQLENSLSDSNLILNQRNAVLECMDDGIIAWDKDLRITLMNDQAASKFKLK 257 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 G + +++ LP V++Q IK L H+E TFE Q +FI+A++TL+P+ F Sbjct: 258 KEHIIGSLLHKIIMLPPVIKQGIKNREKLSHLEITFECQGEFIEALVTLRPL---SNAGF 314 Query: 300 ILLLHPVEQMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + +HP+E +R+ + V +F + + +++ ++AA++ P+LL GE+G Sbjct: 315 LFFIHPLETIRRFAQRNIDNNVELSFDSLVTHSKKMKKVQTIAKRAAKTKNPILLRGEDG 374 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGG 418 VGK ++QA+H+ S+ + GP+I VNC++ + E +G D G+LS+ ELA+GG Sbjct: 375 VGKNKIAQAMHHLSDNSKGPFIIVNCKVIQAENMVRELLGCDEG---EGKLSKFELANGG 431 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 T++LE++E+L+ E+QSALLQ++K + R + R+IP++ ++I +T+ADL V Q F Sbjct: 432 TIYLEQVEFLSSEVQSALLQMLKNNLFMRTSSNRMIPVNFQLITSTSADLEQYVNQGTFR 491 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 R LYYA+ A E+ IP LR R+ I LV+ +L LEKR+ T L I D+AL L+ +WPG Sbjct: 492 RHLYYAISAVELNIPSLRHRQEDIVELVHRQLLRLEKRYKTSLSITDEALQLLLHYSWPG 551 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + IE + L+ I + D P L E ++SA S +EK+AI Sbjct: 552 NLSELQNKIEKIVLNRSGDLITIDDFPSQLLEEPIKGELSAK--GYIQSLEAIEKQAIQQ 609 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 A GR+ E++ L IGRTTLWRK+K++ I Sbjct: 610 AWDHFDGRVNEIATALQIGRTTLWRKLKKYQISPK 644 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 166/663 (25%), Positives = 295/663 (44%), Gaps = 40/663 (6%) Query: 3 GAFNNDGRGISPLIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 G + IA SW R + E+ SI+ + K ++ + L Sbjct: 40 GTDPRLSPYVRDEIANSWIRSQSYNLTPESMGTAPTISSRELNSIFEQNKELIDIAFPLL 99 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + + + ++D + +L RNG+ + + + G E IGTCA L+ Sbjct: 100 DSFKPLLTESGYMVSLVDGSGIVLYRNGNTKMVDRYGNT-IGPGVLWNEATIGTCAHVLS 158 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC---------PVEQTTA 172 + + + ++F N PLFDS G++ + L + Sbjct: 159 IRHKKPISLLGPENFPAYFQNDITSTAPLFDSDGKVIAVLILLQKLGDDPWDLDLHNLQY 218 Query: 173 ADLPLTLAIAREVG---NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFIN 229 L ++A E+ NL L++SL TN L ++ M +G++ +G +Q IN Sbjct: 219 LTLGWVTSLAMEIKTQLNLKLSNSLFKSTN---TALQTAIKMMTEGMVIVSREGLIQHIN 275 Query: 230 AQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLK 289 + AA++ + + GR I E L L +A++Q + ++E + + +++ Sbjct: 276 SPAAQIFNCNTNEAIGRNIMEFLVKNDALAEALRQLKMIHNIEVEVLNDYGTQGYTFSIQ 335 Query: 290 PIIETQG--TSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 P+ + ++ + E+ + +++S G K+ F + + R ++ AR Sbjct: 336 PLPADSSGSSGGVVKIVDTEKAKNMVSSSSGAKLDFDFQSIKGASTKMLRTKSLAQRFAR 395 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD 403 S +LL GE G GK L +QAIHNE R +GP+I +NC + E G G T Sbjct: 396 SPANILLIGESGTGKELFAQAIHNE-YRPSGPFIVLNCAAIPKNLIESELFGYDSGAFTG 454 Query: 404 NEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G ++ELA GGTLFL++I + +E+Q+ LL+V++ + R+ + +D +++A Sbjct: 455 AKKNGSPGKIELAEGGTLFLDEIGDMPIEIQAVLLRVLENKQVMRIGGSKYRAVDFRMVA 514 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T DLA LV+ +F + LYY L + IPPLR R + +L ++ R S K Sbjct: 515 ATNKDLATLVQSGQFRQDLYYRLSVLRVDIPPLRQRDSDVLSLAEFFIQKYNWR-SKLPK 573 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ---------- 572 + + +L+ WPGN +L + I S++ I LP+ + + Sbjct: 574 LSHETKIKLMEYTWPGNVRQLENAIIYALNVSEDELILPEHLPDEIIHNKNHPASLSLNP 633 Query: 573 ----ATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++++ L +S E EK + NA +G I + LLG+ ++TL+RK+K Sbjct: 634 IELSKENNLNEAELRDVVSLKEAEKIVVQNALAKSGNNICIAAELLGLSKSTLYRKLKLL 693 Query: 629 GID 631 GID Sbjct: 694 GID 696 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 641 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 151/632 (23%), Positives = 277/632 (43%), Gaps = 31/632 (4%) Query: 10 RGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + IA SWE L + T A + K +L+ ++ + Sbjct: 35 SELRSEIAHSWETSKDLGVNPFQSQINEIINDQTLAIRLKHNKQLLSYASPRIQQLLDLF 94 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + L I D+ IL G+ L++ G E GT A+ + + Q+ Sbjct: 95 DDSKTVLSIADKDGTILKSVGEKNVLKRAEKRYIFAGGTWTEKSAGTNAVGMVLRTKQSS 154 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKG-RLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + + +HF + + +W A P+ L G + LA + LA A+ + Sbjct: 155 QVLFSEHFCENVHDWYCVAFPVLAPFTKELLGIVNLAGNASDVHRHSIGYALAEAKNMA- 213 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L L RH L+ LE MD V+S D + N A R R + Sbjct: 214 LSLERHFFEYALRHHLFLHTALEKMDHIVLSVDLSDQILTRNEGANRSERFQNET----S 269 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPV 306 I L A++ + + + S ++ +++ P+ + ++ L Sbjct: 270 IASFPELKALVANVRTNGQQIVNEQIQDGSTNKRYQ--VSIYPVRFQDHIYGVVIFLQQD 327 Query: 307 EQM--RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 +++ ++ + + ++F++M P + L+ +AA +L+ GE G GK +L Sbjct: 328 QRVVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVL 387 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTL 420 +QAIH S R P++A+NC + L E G + T ++ G + E A+GGT+ Sbjct: 388 AQAIHQASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTI 447 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + ++LQ LL+++++ V+TR+ IP+DV+VI+ T DL V++ F Sbjct: 448 FLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFRED 507 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGN 539 LYY L ++ +PPLR R IP L+ + L +L + F + + + + L L WPGN Sbjct: 508 LYYRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILERYHWPGN 567 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V++ D I LP+ +++ +D E EK+ ++ A Sbjct: 568 IRELKNVLQQAMFVMDGDVIHPHHLPDSFYSQTQSD--------------EYEKQKLLRA 613 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + + +A L + R T++R++K++ ++ Sbjct: 614 LEQQEGNVTKAAASLNMSRATIYRRLKKYRLE 645 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 155/631 (24%), Positives = 266/631 (42%), Gaps = 14/631 (2%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I I SW+RC+ L + A R ++T Q + + Sbjct: 59 DLSCIKKPIRDSWQRCHNLGVDPAFGKCQDICDIKKLAPETRLLCDLVTEAQPHINNL-- 116 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + R + I + +++ GD + L L F G +E +GT A+ A SG Sbjct: 117 -IRKRGLIVTISNPQGYLINMFGDYRALICAEKLNFGPGANWSEASVGTNAIGTALASGV 175 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 A+ +HF + +W A P+FD G + G I ++ P LPL + AR + Sbjct: 176 ALTVSGLEHFCEGHQSWICSAAPIFDLSGTMIGCIDISGPTTSIHNIPLPLAINGARIIE 235 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + LL + +N + + ++ G++ D G ++ +N AA +L + + G Sbjct: 236 SQLLKKQANELKQQSVNLVTSAFNAVATGMMVLDPNGIIKTVNPTAAVLLNMSQESLIGC 295 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLH 304 + + L++ +K++ + Q A + PI G+ +L+L+ Sbjct: 296 SAQICFEIETALER-LKKSPEIHATMGVTVKWKQRASANARVYPITTPNGSLGCLLLVLY 354 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 + + K F + + +Q A +L+ GE G GK ++ Sbjct: 355 ESQNRPHMALPMETKTHDPFNAVIGVSSAILSAVETAKQVAPQMTSILITGESGTGKEIM 414 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTL 420 ++A+H S RA P++A+NC + E G G T G + E A+ GTL Sbjct: 415 AKALHRASPRAQKPFVAINCGAIPHELIQSELFGYAQGAFTGANRGGNPGKFEQANEGTL 474 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + ++LQ LL+V+++ +TR+ IP+DV++++ T+ +L L+ Q F Sbjct: 475 FLDEIAEMPLDLQVNLLRVLEENSVTRVGGNHPIPVDVRILSATSKNLKELILQKTFRED 534 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGN 539 LYY L +I +PPLR R + L + + L K + +K +D L + WPGN Sbjct: 535 LYYRLKVVKIDLPPLRQRGRDMDLLAEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGN 594 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL IE + L + + + L+ VEKE I A Sbjct: 595 VRELKHAIEGAIALMSGDTLFGDALCDS--PGNLQETALSVPDKERLNLMRVEKETIQLA 652 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 G I + LGIGR TL+ K+ ++ I Sbjct: 653 YARFSGNISHTAKALGIGRNTLYAKLLKYKI 683 >UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulatory protein n=2 Tax=Photobacterium profundum RepID=Q6LL49_PHOPR Length = 651 Score = 637 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 233/630 (36%), Positives = 365/630 (57%), Gaps = 7/630 (1%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 I P + W RC + + + W++PH+A+GVT+ASI + K + L + A+ED +EY+ Sbjct: 26 PNIEPHLQQVWARCRRQQRHDHWSMPHRAKGVTYASIQKSKASFLNIAIPAIEDIYEYLE 85 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 CA I DE C L D +L ALG +G Y EGI+G A+S A +A + Sbjct: 86 SESCAFVISDEAGCTLYLCADSAMKVKLDALGIQEGVYWREGIMGNNAISSAMHLAKATQ 145 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 T +HFK+ L +A A P+F G G +AL PVE+ + + L L + +R++ + + Sbjct: 146 TAGFEHFKEALHGFAVYAAPVFGDTGTALGCVALVLPVEKASVSALGLIHSASRDIASQM 205 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 +S+L E+N+HL++++ LLE +++GV++W G + ++N + +L L + GR I+ Sbjct: 206 QAESMLTESNQHLSEVHVLLEGVEEGVLAWYPNGKIHYLNQKGCDLLGLTVSE-LGREIS 264 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVE 307 +LT+P + QAIKQ L V+ T ES+ + I V++LK + Q T+ +I LL+P++ Sbjct: 265 SILTMPQRVHQAIKQGVGLDMVDTTIESKGRLISLVMSLKIVKNAQNTTHCYIALLYPIK 324 Query: 308 QMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 +R L+ +G + TF + R++ R AA+ PVLL GE+G+GK+ L+Q Sbjct: 325 HIRDLVHQHVGNRARLTFDDIVGGSDAMLRVVRQARHAAKGRGPVLLHGEDGIGKSHLAQ 384 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIE 426 AIHN S+R P+IA+NC+ +A EF+G ++++ +S+ ELA+GGTLFL+++E Sbjct: 385 AIHNGSDRHGQPFIAINCQAIPKELMASEFLGSAL-ESDHTSVSKFELANGGTLFLDQVE 443 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L+ E+Q+ALL ++K G+I R++ ++ +DV+++AT+ DL V + F RQL L Sbjct: 444 CLSSEVQAALLHLLKTGLINRMNGN-IVSVDVRIVATSNVDLDQYVVEKHFRRQLLLELQ 502 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 F+I + PLR R +P LV KL LE T L + +AL+ L+ WPGN EL +V Sbjct: 503 TFDIHVSPLRDRIEDVPILVERKLTHLEAEKKTSLTLSQEALSFLMRYRWPGNHRELRNV 562 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 IE A SD IRV DLP+ + T V L ++ S + EK II +A G+ Sbjct: 563 IERSANFSDGSVIRVKDLPDIILTATEHGQVGDKALHSN-SLIDSEKMTIIRSALDCRGK 621 Query: 607 IQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 + M L + RTTLWRK+K H ID +K Sbjct: 622 VGNMCEDLKVSRTTLWRKLKNHDIDVNDYK 651 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 635 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 153/637 (24%), Positives = 272/637 (42%), Gaps = 25/637 (3%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 G+ + SW+R + ++ V + ++ + L+ +E + Sbjct: 35 PGLRGSVLESWKRSKSYGVQPEQLQARLSKPVDEVLEWAKESDFFQIAIPVLDHVYEKIQ 94 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + L + D CI+ G+P+ + + + F G +E GT A+ A + ++ Sbjct: 95 HTKHLLTLTDSHGCIVYLRGEPRVIDKAHLMQFTLGADWSEESAGTNAIGTAIYLQKPIQ 154 Query: 130 TMADQHFKQVLWNWAFCATPLFDSK-GRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 + +H+ Q +W A P+ D G L G I P E L + IA + Sbjct: 155 IFSYEHYAQGAHDWVCSAAPVHDPCTGELLGIIDFTAPHEYAQPHTLEMARIIALNLQTE 214 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 SL + + + ++ +D + +A L G Sbjct: 215 YSRISLDTKNYLYEEYAKVRNRWPGEALLLFDRTLRIIAETPEARNFLCNLQHQFPG--- 271 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 + AV++ A+ + H + +++ + ++ + Q I+LL Q Sbjct: 272 ---CSPRAVIRDALLACGGVTHTIELLDPKYK----LTSMPVLRNGQQVGCIILLARDSQ 324 Query: 309 MRQ----LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 R +T V+H + + +R I + A ++ PVL+ GE G GK L Sbjct: 325 SRHTRGHRVTDNAINVNHPWRTIIGSSRVIQRAIQRAQIVAATNAPVLITGESGTGKELF 384 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTL 420 ++AIH S R P++AVN +A E G + T G+ + E A+GGTL Sbjct: 385 ARAIHEASPRGKQPFVAVNIAALPRELIASELFGYEPGAFTGAHPRGKKGKFEEANGGTL 444 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + +ELQ LL+V+++ ITRL + +DV++IA T +LA V F Sbjct: 445 FLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRIIAATNQNLAQRVANGEFRLD 504 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGN 539 L+Y L+ EI +PPLR R +P++ + L ++ + + D + L WPGN Sbjct: 505 LFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDKSVERFDPEVLNLFKQYHWPGN 564 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTE-----QATDDVSATRLSTSLSFAEVEKE 594 EL +VIE + S+ I V+DLP++L + +D + S + E+ Sbjct: 565 VRELQNVIEYSVIFSETDSITVNDLPDYLTRSIFKNLEVSDKPIYDTIEMSDAIENEERR 624 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 I + T G I +++ L RTT++RK+K +G++ Sbjct: 625 LIAYWLEKTNGNISQVARQLRRSRTTIYRKIKHYGLN 661 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 633 bits (1633), Expect = e-180, Method: Composition-based stats. Identities = 163/639 (25%), Positives = 268/639 (41%), Gaps = 31/639 (4%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G+ P+I SW RC + A + + ++ ++ Sbjct: 47 ERPAGVRPVIWDSWRRCVRAGLEPDGFEYRFVDAAVLAEKLKSNRLLIETAAEVMQGLLA 106 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFND-GTYCAEGIIGTCALSLAAISG 125 Y PR + + D L G L G+ E + GT LA Sbjct: 107 Y-NPRGH-INLTDAEGVTLHFCG----------LDITPVGSVLLESLQGTNCTGLAIAEN 154 Query: 126 QAVKTMADQHFKQVLW--NWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + V +++++F L A P+ D GR + L + L A A Sbjct: 155 RLVYVLSEENFGTWLRQRRMHCAAAPIRDLGGRTLAILTLTAEPGRFHFHTLGTVQAAAE 214 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 V + +LL E LLE +++G++ DE+G ++ +N A ++ R++ Sbjct: 215 AVSRQMALQALLEEQR-------TLLEVLNEGLVVLDERGCIKALNRYARQLFRVER-DL 266 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGTSFILL 302 G L V ++ L ++ T + + + ++ P +G + L Sbjct: 267 LGAPFHRLGRGERVDSLLLRADEGLHDLDITLQLHDGTHLSCLASVCP--TERGGRIVSL 324 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + S+TF + + + R A+R L+ GE G GK Sbjct: 325 RENRRIREITRRIIGTQASYTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKE 384 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGG 418 L +QAIHN SER GP++AVNC + E G G T G + ELA GG Sbjct: 385 LFAQAIHNASERCGGPFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGG 444 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 T+FL++I + + Q++LL+V+++G +TR+ A+R P+DV+++A T +L+ V F Sbjct: 445 TIFLDEIGDMPFDAQASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFR 504 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWP 537 LYY L+ +++PPLRMRR IP L + L + ++ I +AL L++ AWP Sbjct: 505 EDLYYRLNVLSLSVPPLRMRREDIPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWP 564 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL + IE A + I DLP L A R ++ E AI Sbjct: 565 GNVRELENTIERAANLAGGELIEAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAIA 624 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 A + G ++ + LG+ R L+ KM ++G+ A F+ Sbjct: 625 AALRECRGNVRLAAKRLGVSRGGLYNKMNRYGLSADAFR 663 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 632 bits (1630), Expect = e-179, Method: Composition-based stats. Identities = 165/660 (25%), Positives = 286/660 (43%), Gaps = 32/660 (4%) Query: 6 NNDGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 + I +A SW R + L ++ A I K ++ + +A D Sbjct: 39 PKEYACIRLEVAESWLRSHDLGVNPYKSSLAEHLNSNEIARILAENKDLIEITKAVFVDL 98 Query: 65 W-EYMAPRECALFILDETACILSRNGDP-QTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 + + AL++ D+ +LS G+ + + G +E +GTCA L+ Sbjct: 99 KIKDIMTSNYALYLFDKNGVLLSHEGEKIKLISADYPESSIVGQVWSEATVGTCAHVLSM 158 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD-------- 174 + V + +H+ V N A PL + + G + ++ ++ + D Sbjct: 159 HLKKPVYIVGPEHYCTVFQNSCTSAAPLTNEDNEIIGYLVVSYHIDFPLSHDSYYLSTYP 218 Query: 175 LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAAR 234 L L A+A V N L + +L +++G+I D +G + IN + Sbjct: 219 LGLITAMAVAVENKLRFTKSYQLLKSAHHMQEVILSVIEEGIIITDNRGKIITINKEVVN 278 Query: 235 VLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 + GR I L + +A++ + EA + H ++ ++P+ + Sbjct: 279 IFNTAEEEIIGRTIDRFLG--PQIGEAVRNNETVDIEEAICSNNHDK-SYLVLIRPLDKH 335 Query: 295 QG--TSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 +L ++P+E + L+T++ G ++TF + + I G++ + S+ + Sbjct: 336 GNYPNGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSNENI 395 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-G 407 LL GE G GK L +QAIHN R GP+IAVNC + E G + T E G Sbjct: 396 LLTGESGTGKELFAQAIHNA-HRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGAERRG 454 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ++ELAHGGTLFL++I + +E+Q+ LL+V++ + R+ +D +++A T D Sbjct: 455 RAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAATNKD 514 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDD 526 L + +N F L++ L I +PPLR R + L N + + + I ++ Sbjct: 515 LERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLISEE 574 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD---------V 577 AL L S WPGN +L + + + I+ LPE L+ ++ Sbjct: 575 ALEVLKSYGWPGNVRQLENSVIYAVNLAQGDLIQCRHLPESLYAASSSPAENYRDPPGMT 634 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + L +EK I NA T I + S LLG+ ++TL+RK K+ ID G FK Sbjct: 635 GSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKAKELNIDMGTFKN 694 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 274/636 (43%), Gaps = 17/636 (2%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVT---FASIYRRKKAMLTLGQAALED 63 + + +I S++R K + ++ +T F ++++ + LE+ Sbjct: 15 PNHEKLQKIIDASFKRSKKYNITPQVDGSPESTKLTEQAFRQRIKKQQLFYDTTKEQLEN 74 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 ++ + + D IL GDP + E +GTCA+ L + Sbjct: 75 LYDLLKGTGFCMIFTDNEGYILYLVGDPDLQAHFAHRRCIPRYRWTEKDVGTCAIGLTLL 134 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKG-RLTGTIALACPVEQTTAADLPLTLAIA 182 ++ Q + + ++P+F G L G I L+ E + L + Sbjct: 135 EKISIFLPGTQMYATTAKKISNASSPIFSPDGKELLGVICLSGYSENMHVHTIGLVSQAS 194 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 + + + L + E + A++ES G+++ D+QGN+ N +A +L + A A Sbjct: 195 KNIRSRLQSLEKQQEIAIKNQYMTAIIESKSSGIVTVDQQGNIVQTNHKARNLLAIKADA 254 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII---ETQGTSF 299 +T + + +++ + E S+ + +L PI E Sbjct: 255 RDNL-LTTYIGNSLNIADCLERGRGFRAREIV--SKKTGVSYFASLDPIRLEEEQLVGGI 311 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + E +R+ + + TF + D P + +H R +A+++ VLL GE G Sbjct: 312 FTFVEKNEALRRAVKLIGTQAPFTFDSILGDSPALKSALHLARISAKNTASVLLYGETGT 371 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELA 415 GK L +QAIHN SE G ++A+NC L E G + T + GR ++ELA Sbjct: 372 GKELFAQAIHNASEHKNGSFVAINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIELA 431 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 + GTLFL++I + E+Q LL+V++ G I R+ R IP+++++I+ T DL +++ Sbjct: 432 NNGTLFLDEIGDMPFEMQVKLLRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDVQ 491 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA-RLVSC 534 +F LYY + I IPPLR R+G I LV + +F R ++ + Sbjct: 492 QFRADLYYRISTLRINIPPLRERQGDILKLVQYFIDRHIIKFDRRKQVLPSQTRLAISKY 551 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 +WPGN +L S E +++G + + + + ++ + + EVE + Sbjct: 552 SWPGNIRQLESATERAIYLAEDGVLLPEHF--AISDLFSNTNKEVVKVVGTQTLEEVESQ 609 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I I + + LGI R TL+RK+ ++ I Sbjct: 610 IITETLAFFDNNISKTAQSLGISRPTLYRKIDKYRI 645 >UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular organisms RepID=Q47HA8_DECAR Length = 679 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 264/633 (41%), Gaps = 31/633 (4%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G G+ ++ SW R A G + R + + LE E + Sbjct: 47 GVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDKIHQLRARSHDLYEAAKPVLETLREIL 106 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + D + IL NG+ + + G +E +IGT A+ + QAV Sbjct: 107 RESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTIATHQAV 166 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + A +H+ + +W A P+ D GR L G + ++ E L L ++ A+++ Sbjct: 167 QIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEG 226 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQF---INAQAARVLRLDATASQ 244 +L + ++ +D V+ +D++G + QA ++ + Sbjct: 227 ILARRDAEQHGRLLEHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEV 286 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 G +T L A+ L + L P+ G LL+ Sbjct: 287 GSQVT-------ALDFAVHPDERLSQTPLWLRPEW--------LHPVRSRDGDLGTLLVI 331 Query: 305 PVEQMRQLMTSQLGKVSHT----FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 P+ + S + T FA + ++ A PVLL GE G G Sbjct: 332 PIGTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAG 391 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAH 416 K + ++AIH S + GP+IAVNC LA E G G T G + E A Sbjct: 392 KEVFARAIHKASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQAD 451 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL++I + +++Q LL+V++ GV+ RL + + V++IA T DL R Sbjct: 452 GGTLFLDEIGEMPLDMQPHLLRVLQDGVVVRLGDTKERKVAVRIIAATNRDLQADSSTGR 511 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCA 535 F L++ L + +PPLR R A++ + + L +++ K + + L L+ Sbjct: 512 FREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLAPEVLHHLLRYR 571 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS---FAEVE 592 WPGN EL +V E + SD+ RI S LP H+ ++ ++ +++ AE+E Sbjct: 572 WPGNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEME 631 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + AI A + G + + LGI R+TL+ K+ Sbjct: 632 RAAINAAVANSHGNLSMAARNLGISRSTLYVKL 664 >UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A511_ALHEH Length = 662 Score = 628 bits (1620), Expect = e-178, Method: Composition-based stats. Identities = 158/632 (25%), Positives = 269/632 (42%), Gaps = 21/632 (3%) Query: 15 LIATSWERCN--KLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 LI+ SW+RC L R+ + +G R +L + A + ++ ++ Sbjct: 30 LISKSWQRCQAYGLDPRKKPKDANVLEGPQVKEERERHGELLKVANAEMHSLYQQVSGSG 89 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 +L + D IL GDP ++ + G G +E GT + A + V + Sbjct: 90 WSLLLTDNRGVILDYVGDPNLRREFRSAGLWLGADWSERHEGTNGIGTALTESRPVAVLR 149 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 DQH+K + C P+ D+ G++ + + T TLA+ + Sbjct: 150 DQHYKACHHALSCCGAPILDANGQVMAVLDASTVNGNQTPETQSHTLALVTLSAQFISKW 209 Query: 193 SLLAE-TNRHLNQLNALLES---MDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRA 247 L E ++ + + ++ E ++DGV++ G + + A L L D G Sbjct: 210 RFLEEFSDAIIIRFHSRCEYVGLINDGVLAVSRDGTIVGADHNACVFLGLPDRHRLIGWP 269 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 I ++L + + + L + T Q + + PV+ Sbjct: 270 IDQVLDIRPEILVERAERPYLPYWVLTTAQGTQLHARIQLGHTAAGRRAAEQPARPVPVQ 329 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 T + +DP+ R ++ + P+LL GE G GK L ++A Sbjct: 330 SRSASQPRDHRATLCTLEALKGNDPRMARNVNRAYRIIDKDIPILLNGETGTGKELFARA 389 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLE 423 +H S R GP++AVNC + + E G T NGR ++ AHGGTLFL+ Sbjct: 390 VHTASSRRDGPFVAVNCASIPEPLIESELFGYKGGAFTGADRNGRKGKILQAHGGTLFLD 449 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + +ELQ+ LL+V+++ I + + +DV +++ T +L LV + RF LYY Sbjct: 450 EIGDMPLELQARLLRVLEEREIVPIGGDKPQAVDVYLVSATHHNLPELVAEGRFREDLYY 509 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEK-RFSTRLKIDDDALARLVSCAWPGNDFE 542 L+ +T+PPLR R + +R + + R+ ID ALA L + WPGN + Sbjct: 510 RLNGLTLTLPPLRDRAD-----CQDVIRCILRLESDGRVDIDQAALAVLRNHPWPGNIRQ 564 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD----VSATRLSTSLSFAEVEKEAIIN 598 L +V+ SD + V DLP+ + T + T A E+ A+ Sbjct: 565 LRNVLRTAVALSDGETLTVEDLPDDVLDAAETAGDDQVIEGTCTGGGDPLANAERRALQA 624 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + GG + + LG+ R TL+RKM++HG+ Sbjct: 625 ALEQHGGNVSRTAESLGVSRNTLYRKMRRHGL 656 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 158/652 (24%), Positives = 281/652 (43%), Gaps = 43/652 (6%) Query: 12 ISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + +A SW R T + + + + + ++ + Q + + + Sbjct: 37 LRKEVAESWIRSKNNGVFPWTSYSKYYLTEEEWGVLKEQNERLIHIAQPLISNYLGLAST 96 Query: 71 RECALFILDETACIL---SRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +L + D + L N + E GT A LA + Sbjct: 97 NGHSLELFDPSGAFLLGIHINISSTPV---------LSIVFNESTTGTTAHGLATYHKKP 147 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVE---------QTTAADLPLT 178 + + +++ V N A P+ D G + GT+AL + L Sbjct: 148 FQLIGPENYLDVWQNMICSAAPILDEMGEVLGTLALVQDMGEKPWEKNRSNLHIHSLGWV 207 Query: 179 LAIAREVGNLLLTDS-------LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 ++A +GN + + + + + L +LE +D+GVI+ + G + N + Sbjct: 208 SSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVITIEPNGRILSSNHE 267 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 +R+L ++ +GR I E L + L + + ++E + + +++L+P+ Sbjct: 268 GSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVNGREEKQYLVSLRPV 327 Query: 292 IETQGTSF---ILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARS 347 + IL + +++ L+ ++ G F + + R+ AR+ Sbjct: 328 YKQGNDELDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAKALARRFART 387 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN 404 VLL GE G GK L +QAIHN S R GP+IAVNC + E G + T Sbjct: 388 RENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPRNLIESELFGYESGSFTGA 446 Query: 405 EN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 E GR ++ELA+GGTLFL++I + +ELQ+ LL+V++ ++ R+ R +D ++I Sbjct: 447 EKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYRQVDFRLITA 506 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T DL + ++ +F LY+ + I IPPLR R I L + + + KR Sbjct: 507 TNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYAKRVGLPAAV 566 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT----DDVS 578 I +A R++ WPGN +L + + S+ G+I +S LP+ L ++ + Sbjct: 567 ISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKRTALPMVSEKE 626 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + S ++EK I A + G + S LLGI +TTL+RK+K+H I Sbjct: 627 CDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHNI 678 >UniRef50_A5N2U4 Predicted signal transduction and transcriptional regulator protein n=2 Tax=Clostridium kluyveri RepID=A5N2U4_CLOK5 Length = 659 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 142/637 (22%), Positives = 273/637 (42%), Gaps = 21/637 (3%) Query: 8 DGRGISPLIATSWERCNKL----MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 D + IA SWERC +KR + N+ + + + + + + + +++ Sbjct: 30 DRDVLRNDIAASWERCINSQVDPLKRNSGNIIYDLRDMLEQ---EKNNLLFKIAEPFMKN 86 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 +E + P + +E + G+ + + + G E IGT A S+ ++ Sbjct: 87 LYEVIKPLGFIAMLGNEDGINIDMGGNKKMMSIAEKINAVKGASFEEKYIGTNAASICSV 146 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC-PVEQTTAADLPLTLAIA 182 + + +H+K + NW + P+F+ +G + I ++ + T + L + A Sbjct: 147 EKRVAQVTYYEHYKANMHNWCCSSVPIFNKEGNMIAVINVSNMDTSKHTPLLISLIASTA 206 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 R + N++ L ++ ++ D G + IN A +L + Sbjct: 207 RLIEMKFKLYDANDIYNQNYWFLKESMKKNPRALLFLDNNGCINHINENAVEMLGVSTKE 266 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL 302 S GR ++E+ + + +K++ ++++ + + + ++ Sbjct: 267 SIGRHLSEVFDKKYIKNDKMDVGSNVKNIILEDRNRNKTYLKLSKILSSDKYHLGYVGII 326 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 PV+ + K ++F + + + + I ++AA + V + GE G GK Sbjct: 327 EQPVKN-----SGNHHKAKYSFEDIKYNCSKMDKEIKKAKRAAYNDMVVFINGESGTGKE 381 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGG 418 L +QAIHN +R GP+IAVNC + E G + T + G+ + +LA G Sbjct: 382 LFAQAIHNYGKRCNGPFIAVNCGALPRELIQSELFGYEKGAFTGAKKEGQPGKFQLAQKG 441 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I + +ELQ+ LL+V+++ +T L + +I +DV++I T DL + VE+ F Sbjct: 442 TLFLDEIGDMPMELQANLLRVLQEKTVTPLGSNEIIELDVRIITATNKDLLLEVEKGNFR 501 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAW 536 LYY + I +PPLR R + L L +K+ D+ + L W Sbjct: 502 EDLYYRISGINIDVPPLRERGKDVEELFYKFLDKYASDVCEYKNIKVTDEFIRALCEYKW 561 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS--LSFAEVEKE 594 PGN EL +++ ++ + ++ I V DLP + + + S E Sbjct: 562 PGNVRELENMVISILNNLEDSCIGVEDLPAKILKCIKVEGNTKPENDGMYLKSLDSTEMI 621 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 I + I + + LGI R TL+RK+ ++ I Sbjct: 622 NIEQTLKRCNNNISKSAKSLGITRATLYRKIDKYKIK 658 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 625 bits (1612), Expect = e-177, Method: Composition-based stats. Identities = 169/644 (26%), Positives = 284/644 (44%), Gaps = 44/644 (6%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 + I SW+R + A+I ++ + ++ +E+ Sbjct: 43 GEQPGWMRRSILQSWQRSQQRGTDPADFTYIAPPAEELAAILEHNAELILVARSIMENLL 102 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 Y P + + D L G T G+ E ++GT + I Sbjct: 103 AY-NPDGH-INLTDAQGVTLHFCGADMT---------PVGSILREEVLGTNCTARCLIEQ 151 Query: 126 QAVKTMADQHFKQVLWNWA--FCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + V ++ +++K L A P+ D+ G+L G + L + A L A A Sbjct: 152 RLVYVLSGENWKFDLRKRHRQCAAAPVRDASGQLIGVLTLTATPDNFNAHTLGTVQAAAE 211 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATA 242 VG L+ LLAE ++LE++++GVI D G ++ +N A ++ LD A Sbjct: 212 AVGQQLMLRRLLAEQ-------QSILETLNEGVIVCDRHGRIKTLNRYARQIFSGLDPDA 264 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQH-QFIDAVITLKPIIETQGTSFIL 301 ++L P ++ E F Q I +I+L P + +L Sbjct: 265 GT----IDVLLQPQ--GASLLTMPFCNDRELQFMPDGVQSIPCLISLMPAPDG---GRVL 315 Query: 302 LLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 L +++R + +G S+TF + P+ ++ I R ++R+ VLL GE G G Sbjct: 316 SLRENQRIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTGESGTG 375 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAH 416 K L +QAIHN S R +IA+NC + E G G T G + ELA Sbjct: 376 KELFAQAIHNASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRRGGSPGKFELAD 435 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL++I + +E Q++LL+V+++ + R+ A + ++V++IA T +L VE+ Sbjct: 436 GGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEKGA 495 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCA 535 F R LYY L+ + IPPLR R+ IP LVN + +L R ++ +A+ L + Sbjct: 496 FRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQVSPEAMRCLQAWH 555 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 WPGN EL +++E + + I DLP+ + Q S E E++ Sbjct: 556 WPGNVRELENLVERMVNLCEGLEIDRQDLPDDMVQRQQPPVQLP-------SLQENERQH 608 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV 639 ++ G +++ + LLGI RT L+ K+ Q +D +RR+ Sbjct: 609 VLQVVAEQHGNLRQSAQLLGISRTALYNKLNQWQVDLASLRRRL 652 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 150/649 (23%), Positives = 281/649 (43%), Gaps = 37/649 (5%) Query: 15 LIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 LI S +R + + + G +I K ++ + + ++ + + E Sbjct: 7 LIENSHKRSESYGVEKNSDHSNKILTGEELENILTINKELIEVSKIYIDMVFSAVMDNEF 66 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D+ CIL G + +L G Y E IGT A+ A + ++ A Sbjct: 67 IIVLTDKNGCILYIKGAEENNSKLGGNNLEVGAYMDEQNIGTNAMGTAIKEDRCIQITAT 126 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ + N A P+ ++KG + GT+ L + L L + + + N L Sbjct: 127 EHYIKRFHNLTCSAAPIHNTKGEIIGTLNLTGRRDMKHPHTLGLVVFGVKAIENELDKKG 186 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + N+ N + ++++++D G++ +++ + IN + +D + I +L Sbjct: 187 IRDILNQTYNYMESVIDNVDKGIMIVNKEYKVININKLGVEIFNIDKDLIISQDIHYILP 246 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 + + ++ + E + + ++ K + + +++ E+ + Sbjct: 247 DLGNVIEELENHNDDIIKELKLKHTSRHKIRLV-FKGLKHKENIIGMVVTISYEKEGKDN 305 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + G TF + D +I + A S VL+ GE G GK +L+QA+HN S Sbjct: 306 KNATG-AFFTFNDIIGDSAAIVNVITNCKVIANSPSTVLIQGESGTGKEILAQAMHNYSV 364 Query: 374 RAAGPYIAVNCELYGDAALAEEFIGGD----RTDNENGRLSRLELAHGGTLFLEKIEYLA 429 R ++A+NC + E G + G + E+A GGTLFL++I + Sbjct: 365 RRRNKFVAINCGAIPANIIESELFGYEDGTFTGGKRGGNPGKFEIASGGTLFLDEIGEMP 424 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 ++ Q LL+V++ G +TRL R IPIDV+VIA T +L V++ F LYY L Sbjct: 425 IDAQVKLLRVLQNGRVTRLGGSREIPIDVRVIAATNKNLKREVQKGNFREDLYYRLCVIP 484 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIE 548 IT+PPLR R+G + L++ LR + + + +ID +L+ WPGN EL + IE Sbjct: 485 ITLPPLRERKGDVKMLIDFFLRIKSFQLNKSIPEIDKSLYNKLLDYDWPGNIRELENYIE 544 Query: 549 NLALSS----------------------DNGRIRVSDLPEHLFTEQATDDV-------SA 579 N+ D ++ L + ++ + T+ + Sbjct: 545 NIVNLDGRSSFNLWEFEDNQSFETDKTYDRKILKDGFLNKEIWEDDQTNGLLKNVNTEKT 604 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + +L+ E+E +AI A ++ + + + LGI R TL+ K+K+H Sbjct: 605 EYMVNTLNLEELEMKAIHEAVRINDHNMTKAAKTLGISRNTLYLKLKKH 653 >UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PFE6_BACCO Length = 610 Score = 621 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 156/632 (24%), Positives = 276/632 (43%), Gaps = 49/632 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I+ IA SW RC K H + R K L + + ++ Sbjct: 19 DPERINNRIAESWYRCKKRDVNPYLRKGQHILPVEKLLAHRERHKDFLNIAERHVKKMEP 78 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++D +LS +G+ +T+ + + F +G E +GT A+ +G+ Sbjct: 79 VFQEAGMMALLIDPCGHVLSVSGNRKTIFEAQKINFVEGVCWTEERVGTNAIGTTLETGE 138 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 AV +HF W+ A P++DS+ L G + L CP ++ L + ++A V Sbjct: 139 AVMVNGPEHFSVASHQWSCAAAPVYDSQRNLVGVMDLTCPYTESHPFMLAMVSSLAYTVE 198 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDG----VISWDEQGNLQFINAQAARVLRLDATA 242 + + +RH + +E D ++ DE+G A+R LR Sbjct: 199 Q----EIVRMAKSRHERFIQKAVELSDQYGDRLLVITDEEGKAV----AASRPLRKKMPD 250 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL 302 GR I E+ + + ++ I L E GT F L Sbjct: 251 YFGRTIEEMTSQTDTI-----------------------VNQSIPLPSSREKIGTCFFL- 286 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + + L + L K F + + + R A+ S + GE G GK Sbjct: 287 ----SENKNLSGTLLQKEKFVFRGVTGISRSFQETLRKARIASLSDTTCFITGETGTGKE 342 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGG 418 L+++AIH S R GP+IAVNC + EF G T + G + E AHGG Sbjct: 343 LVARAIHENSSRKNGPFIAVNCGAVPKELMESEFFGYADGAFTGAKRGGHKGKFEQAHGG 402 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL+++ L +Q+ALL+V+++ + + + + + +DV++IA T DL LV++ +F Sbjct: 403 TLFLDEVAELPSAMQTALLRVLQERKVVPVGSAKEVSVDVRIIAATHKDLPKLVKEGKFR 462 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 L+Y L+ F + +P LR R+ +PAL+ + ++ + ++I + ++ WPG Sbjct: 463 EDLFYRLYVFPVRLPALRERKEDLPALIQY----ISRKKNQDVEIPPAVMKKMQDYHWPG 518 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL +VIEN+ L + G + + + + +++T +E++ I+ Sbjct: 519 NIRELMNVIENVRLLAVAGEEEAERYVDEYVSGETGLNGMEKQVTTLNPREAIERDMILE 578 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + T G + +L I R+T +RK++++G+ Sbjct: 579 ALKHTKGNAAAAAKMLDIPRSTFYRKLRKYGL 610 >UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Burkholderia RepID=B2JW78_BURP8 Length = 689 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 159/648 (24%), Positives = 263/648 (40%), Gaps = 25/648 (3%) Query: 9 GRGISPLIATSWERCN-KLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + ++ SW+RC + P +++ ++ E Sbjct: 35 SADVRSVVDDSWQRCLVGHVNPGVDRAPPAVAETQLMQWRDANARLVSASLPLMQQTREL 94 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 ++ + + D IL GD + L+ S +G G E GT A+ A QA Sbjct: 95 LSQTGTVMLLADPDGLILQHEGDMRILEPASEVGLVPGCNWTELNCGTNAIGTALTLKQA 154 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +HF + W AT + D G + G I ++ + + L LT+++A + Sbjct: 155 VQIHGAEHFCAGIKRWTCSATVIRDPMDGHVLGVIDVSGLADTYSRYSLALTVSLAGRIE 214 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA---ARVLRLDATAS 243 + L D++ + D ++ D++G L N Q R L D Sbjct: 215 SRLAKDAMERRLRLLDRCASGFGSHASDAMLVIDDKGRLVKANPQVVPTLRRLGFDVNLD 274 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G L L + P A E+ + + + I T + Sbjct: 275 AG---FVLPGLDTTADHPLTANAPPWLHYAKVETLREGSTVLGFVVVIPGTGNVRGAISP 331 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + + S G F + D R + RQ A S PVLL G+ GVGK L Sbjct: 332 SGGRDKLRSVHSGAG----AFERIIGDSRTLRAAVDKARQLAPSKVPVLLLGDTGVGKEL 387 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGT 419 +Q IH SERA GP++A+NC LA E G T G ++E A GGT Sbjct: 388 FAQGIHQASERAEGPFVALNCGGLSRDLLASELFGYAEGAFTGARKSGAAGKIEAADGGT 447 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +++Q LL+V+++ I RL ++ +++A T DL + + F Sbjct: 448 LFLDEIGEMPLDIQPHLLRVLQENEIYRLGENTPRKVNFRLVAATHRDLKDAIAKGSFRM 507 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 L+Y + ++IP LR R +P L++ L L + T D +A A ++ WPG Sbjct: 508 DLFYRIAVTTVSIPSLRERGEDLPTLISYWLGYLCDCYGLTPRSFDAEAYACMLKYEWPG 567 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLP------EHLFTEQATDDVSATRLSTSLSFAEVE 592 N EL + IE L ++ I V LP A +++ ++T S E Sbjct: 568 NVRELRNAIEGALLLAEGTTITVEKLPVEVAAAAATAVHLAQGEMTEPVMATGDSLKTAE 627 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI--DAGQFKRR 638 E I A GG + + +A LGI ++TL+ K++++ + +RR Sbjct: 628 AEYIRRALARCGGNLTQAAAQLGIAKSTLYEKLRRYDLIAAVSDVRRR 675 >UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Clostridia RepID=B8G1B8_DESHD Length = 628 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 156/630 (24%), Positives = 272/630 (43%), Gaps = 31/630 (4%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + I+PLI SW+R ++ + ++ ++ + L ++ + Sbjct: 18 QNIAPLIYRSWQRSLAHNINPAVISNNKFLNDSGLRELRESREDLIRAAGSVLPFLFQLL 77 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 ++ + D+ A IL GD L + + + G E + GT A+ A I G V Sbjct: 78 NSSNFSILLGDKDAFILESLGDGPFLSKAQRIFLSPGGNWGEDVKGTNAIGTALIEGMPV 137 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 H+ Q A P+ +G + G I ++ + L + L AR + Sbjct: 138 TIQGMDHYVQENHFLTCSAAPIHGLQGEIIGVIDISAEIGNQHC-TLDIALVGARLIEQN 196 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L ++ E + ++ + DG +S D G + +NA A ++ GR + Sbjct: 197 LRHLTIERELKFYQQGSKLAVDLLKDGCLSIDRHGMITQVNATGASLIGRKKDDLIGRHV 256 Query: 249 TELLTLPA--VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 T++L P VL Q + + V + I + G+S + Sbjct: 257 TDVLGAPKGWVLNQDTLDLR---------HKDGKGHELVTHFQRISDNSGSSLGAV---- 303 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + +G+ + + + ++R ++ +AA++ F VLL G+ G GK ++++ Sbjct: 304 -----GVIQIIGQNLDNLSWVGRTSLKSREILEKAHKAAQTDFSVLLQGQTGTGKEIIAR 358 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFL 422 IH S R GP+IA+NC + L E G G T G+ + ELAHGGT+FL Sbjct: 359 MIHELSPRKNGPFIALNCAAIPNTLLESELFGYADGAFTGARRGGQPGKFELAHGGTIFL 418 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + + Q ALL+++++ + R+ + L IDV+VI + DL LV+ + F L+ Sbjct: 419 DEIGDMPLNAQVALLRLLQEKALVRIGGKTLQKIDVRVITASHKDLKALVDAHAFRHDLF 478 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDF 541 Y L I +PPLR R +P LV + + + + + S +WPGN Sbjct: 479 YRLKVVSIELPPLRERLEDLPELVTHFIHKACAAIGRPMIDMAESVYPYFYSYSWPGNVR 538 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 EL + + + + + V DLP + E ++ +S A ++ I+ A Sbjct: 539 ELENCLAGMVAMCNGSLLTVRDLPPEVR-ESLSEKTEDEDVSL---LASQTRQIILQALV 594 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 T G+I S LLGI RTTL+RKMK+ I Sbjct: 595 KTDGKILPASRLLGISRTTLYRKMKELKIS 624 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 147/673 (21%), Positives = 273/673 (40%), Gaps = 48/673 (7%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 +D + +A SW R K+ V + + + ++ + ++ Sbjct: 48 PSDYPCMDKDVAASWMRSRKMGVNPHKVV-TIPNEDQLTKLREQHQQLIEITSEQVKPCK 106 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 E M ++ D++ IL G ++ G G E GT A L Sbjct: 107 EQMVACGYMFYLFDKSGMILCHEG-VWADDKVGECGSRIGILADEESEGTTAHGLCFHLK 165 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP----------VEQTTAADL 175 + V+ + +++ L N A P+ G + I + P + L Sbjct: 166 RPVQLIGPENYCVPLQNRIASAAPIMGEDGEVKAAIVVLSPPLVEDLEDDKINHLYMHTL 225 Query: 176 PLTLAIAREVG-------NLLLTDSLLAETNRHLNQLN--------------ALLESMDD 214 L ++A + + + L + + +L A +D+ Sbjct: 226 GLISSLATSIETKIKLVNHTECLEKSLEDATKLNEELKKAKDNMASAHESLTASFAFIDE 285 Query: 215 GVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEAT 274 G+I+ D +G ++ IN +A R+ R R + E L+ + + + E Sbjct: 286 GMIAVDNKGKIRQINNEAMRIFRAHPEEIGNRNLNEFLSAESSIMHRANKGESFTVDECV 345 Query: 275 FESQHQFIDAVITLKPIIE---TQGTSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQD 330 ++ I+++PI+ + IL L E++ +++ G+ ++ + + Sbjct: 346 KVGTNKARPYRISVRPILNQYTKKLDVVILKLISCEKLNNAQSNRSGRSATYQIEDILGE 405 Query: 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390 + I + A S +LL GE G GK L + +IHN R GP++AVNC Sbjct: 406 SVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNI-YRPNGPFMAVNCAALPRE 464 Query: 391 ALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 + E G + T E G+ ++ELA GGTLFL++I + +E Q+ LL+ ++ + Sbjct: 465 LVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPLEHQAILLRSLQDKRVM 524 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ R +D +++A T DL +VE+ F LYY + I IPPLR R I L Sbjct: 525 RIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGIFIPPLRERGKDISLLS 584 Query: 507 NNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP 565 +R+ +R ++ +A + WPGN +L + I + ++++ I S+LP Sbjct: 585 RLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHHAINTANDNVIEPSNLP 644 Query: 566 EHLFTEQATDDVSATRL-----STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 ++ + + + +L +EKEAI A I + ++G+ R+T Sbjct: 645 GYVLDDTTSPSSTGLPRFAGAGDHNLCIKTIEKEAIEAALLRANNCIPTAAEIVGLSRST 704 Query: 621 LWRKMKQHGIDAG 633 L+RK+K + I Sbjct: 705 LYRKLKDYNISVN 717 >UniRef50_Q6AR13 Related to sigma54-dependent transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6AR13_DESPS Length = 630 Score = 616 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 159/624 (25%), Positives = 273/624 (43%), Gaps = 23/624 (3%) Query: 15 LIATSWERCNKLMKRETWNVPHQ--AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 +I S +R + + Q K +L A + + ++ M+P E Sbjct: 19 VIRASHKRSRQYGVNQETRNLEQKRLSPAELEKKQDENKELLGAIAATINEFYDLMSPEE 78 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + D IL G + + + F+ G E +GT A SL +++ Sbjct: 79 FLVGFADSEGYILHLAGGDRARETSADRQFSLGYRWTEKDVGTTATSLCLRLKVSIQLKG 138 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 H+ + A P+F +G L G++ + L + + AR + + Sbjct: 139 RDHYCKQAQGLLSSAAPIFGHQGVLLGSLCIFGDKSLIHPHTLIMITSSARSIERHMRLM 198 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 E + L+ ++E+ G++ D +Q IN QA ++L +D +G++I+ L Sbjct: 199 RWNTELISNAGFLDNVIEAAGTGLLIIDTDLIVQKINYQAKKILNVD--DLKGKSISSLS 256 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMR 310 L L + K+ E + + I V + +P++ +L + +R Sbjct: 257 GLQLDLDSIFENPSVWKNRECHIQHNKKDIHLVYSAQPVLSKNDKPLGAVLNITKFSNIR 316 Query: 311 QLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 +L+ G K TF + P + + ++A+ S VLL GE G GK L +QAIH Sbjct: 317 KLIDKISGIKPYFTFDSLIGSSPAFTKAVDLAKRASHSEATVLLLGETGTGKELFAQAIH 376 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLEKI 425 N ++ A P++ +NC L E G G T + GR + LA+ GT+ L++I Sbjct: 377 NGAKGADKPFVPINCGAIPGELLESELFGYAEGAFTGAKRGGRSGKFILANDGTMLLDEI 436 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + ++Q LL+V++ V+ + AR+ + + ++IA+T DLA + NRF R LYY L Sbjct: 437 GDMPHDMQVKLLRVLQSKVVQPVGARKPLQTNARIIASTHVDLAEAMLHNRFRRDLYYRL 496 Query: 486 HAFEITIPPLRMRRG-SIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 + +I IPPLR R I AL + LR + + + DA+A LV+ WPGN EL Sbjct: 497 NILQIKIPPLRERGEVDIKALAHYFLR----KNNPEFQFTADAIAGLVAYHWPGNVRELE 552 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 + I+ + I V DL + + + + ++EK+ I + T Sbjct: 553 NTIQRALHVCKDQTITVKDL-------GLSKQDLSKKAGFQGTLLDMEKKVIAETLRETK 605 Query: 605 GRIQEMSALLGIGRTTLWRKMKQH 628 + E + LGI R TL+RK+KQ Sbjct: 606 SNMAEAARRLGISRATLYRKVKQF 629 >UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax=Aeromonas RepID=A4SSX2_AERS4 Length = 633 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 261/638 (40%), Positives = 385/638 (60%), Gaps = 14/638 (2%) Query: 5 FNNDGRGISPL---IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 +D + + P + SW RC W+ PH A+G T S+ +RK+ +LT G+ AL Sbjct: 1 MPSDLQPLQPWPDYLQASWLRCAHQTSATLWHPPHSAKGQTLQSLRQRKRDLLTTGEMAL 60 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 ED +E+M R CAL + DE+ C+L+R G P TL +L+ALGF G + +EG IGT A++LA Sbjct: 61 EDLYEFMERRPCALLLTDESGCVLARTGHPGTLAELAALGFGPGAFFSEGRIGTNAINLA 120 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 A+ G + QHF Q L W CA+P+++S GR IAL C VE+ +A DL LT++ Sbjct: 121 ALEGVPLCVSGPQHFNQTLHPWHSCASPVYNSNGRQVAIIALICKVEEASAGDLALTVSA 180 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 RE+ +LL ++L+ E+ HL++L ALL+ MDDGV++WD QG L+++N AA LRLD Sbjct: 181 GRELAHLLQMETLMQESQHHLSELYALLDGMDDGVLAWDPQGRLRYLNGLAASRLRLDPA 240 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE----SQHQFIDAVITLKPIIETQGT 297 G+ + + L LP LQ AIK PL HVE T E + +FI+A+I+LKP+ +G Sbjct: 241 LCLGQPLEQHLLLPQRLQLAIKGQTPLSHVEVTLERLGAQEGEFINALISLKPLPGPEGV 300 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 SFI LLHPV+++R + L + + + + R+L+ + RQAA+S+ P+LL GE+ Sbjct: 301 SFIALLHPVDRLRAI--HHLRQTVPELSALVGESSAMRKLLRYARQAAQSTGPILLRGED 358 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 VGKA L++AIH SE+AAGP I +NC+ +A E +G D E R + ELAHG Sbjct: 359 EVGKAQLAEAIHFGSEQAAGPLITLNCQALPSERMALELMGSDEAGQE--RAGKFELAHG 416 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTL LE++E L+ +Q+ALLQ++K G I R D+ R++P+ V++IAT++A L LV++ F Sbjct: 417 GTLVLEQVECLSAPMQAALLQLLKTGRIQRFDSARILPLKVRIIATSSAPLEQLVQEGLF 476 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 RQL YAL A E+ +P LR R +P L++ +L + + + AL L++ WP Sbjct: 477 GRQLLYALQACELWLPGLRERAADLPGLISQQLGAQGRE--PVRQFSPAALDCLLAYPWP 534 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL S +E+ L + GRI LP + L+ AE+E++AI+ Sbjct: 535 GNLGELRSAVEHALLHAGQGRIPPEALPAAIRHGYQLVANEVVGQPL-LTLAELERQAIL 593 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 A G++ +M+ LGI RTTLWR++K GID + Sbjct: 594 RCAHACKGQVSQMAQHLGISRTTLWRRLKLLGIDPADY 631 >UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibrio RepID=A7K4B9_VIBSE Length = 641 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 217/633 (34%), Positives = 353/633 (55%), Gaps = 16/633 (2%) Query: 4 AFNNDGRGISPL-----IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQ 58 AF +SP + SWERC K TW+ PH A G TF+S+ +R + ++ Sbjct: 12 AFFQKHHWVSPEFSRTPVLESWERCIKRCSPYTWSKPHIASGFTFSSLMKRNEHLIECAT 71 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 LED ++ + + L + D CILS G Q++ ALG G + +EG IGT A+ Sbjct: 72 TVLEDTYDMLGDEDLLLMVTDGNGCILSTVGHDSMRQEMQALGIKQGCFLSEGKIGTNAV 131 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 +L + + A +HF + L ++A A P+FD G+L GT L E DL + Sbjct: 132 NLCINTHIPCEVFAAEHFNRHLHSYASVAAPVFDQFGKLRGTTCLFKKAESYKKEDLVII 191 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 + A+EV + S NR NA LE MDDG+++WDE+ + +N Q+ R+L + Sbjct: 192 ASSAKEVSLQIHIQSEQENMNRLTCAHNATLECMDDGLLAWDEESRITMVNHQSERLLNI 251 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 +A+ + + +L P + +I+ + T E + +F++A+ITL+P+ + + Sbjct: 252 EASQVLDKEVFSVLRFPPNVLNSIESGASINRKLTTVEVRGEFVEAIITLRPLNDG---T 308 Query: 299 FILLLHPVEQMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 +L LHP++++R+L Q+ G +TF+ +P + + +I ++A +S P+L+ GEE Sbjct: 309 HLLFLHPIDKIRELAQQQIGGSARYTFSTLPVISRKMKHVITVAKRAIKSKSPILITGEE 368 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 GVGKA L+ AIHNES GP+I +NC L +E +G D G S+ ELAHG Sbjct: 369 GVGKATLAMAIHNESTYKEGPFITLNCRSINTEQLVKETLGYDEG---QGMPSKFELAHG 425 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFLEK+EYL+ +LQ+ LL+++K G+++R D+ RLIP+D ++I +T ++++ V Q F Sbjct: 426 GTLFLEKVEYLSPDLQAVLLKLLKTGLVSRSDSLRLIPVDFQLITSTASEISEYVTQRSF 485 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 RQLYY + + E+ IPPLR R+ I LV + E+R + + I+ AL L++ W Sbjct: 486 GRQLYYEISSNELHIPPLRKRKEDIEFLVQQLISHYERRHNVTISIEPVALEALMNFRWS 545 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN+ EL + E + L+ + I+++D+PE + + + ++ E E+ AI+ Sbjct: 546 GNNSELRNRTERILLNRSSNLIKLNDIPEDI----KLNSRHTAENTPVITLEEAERRAIV 601 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A G++ +M+ L IGRTTLWRK+ + G+ Sbjct: 602 QAWNQCDGKMHDMAKALQIGRTTLWRKINKFGL 634 >UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4 Tax=Betaproteobacteria RepID=A1K4T7_AZOSB Length = 686 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 168/640 (26%), Positives = 278/640 (43%), Gaps = 40/640 (6%) Query: 9 GRGISPLIATSWERCNKLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 I + SW R P A+G + RR + ++ + Sbjct: 52 PSTIESPVLDSWRRSRDAGVNPVGRAAPVAARGDDMELLRRRHRELMAAASNLFAHTGDL 111 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +A + + +L GD TL + G E ++GT + A + Sbjct: 112 LAGSHSIMLLTSPEGVVLDAAGDAATLDAARDIHLMTGGNWCEAVVGTNGIGTAIATRCP 171 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 + +HF + + W A P+F+ + G + ++ P + +L L +++AR++ Sbjct: 172 AQIHGAEHFCEGIQGWTCAAAPIFEPGTQDILGVLDISGPPQTFQRNNLLLAVSVARQIE 231 Query: 187 NLLLTDSLLAETNRHLNQ-LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 + L+ S L E R L +N L + G+++ D QG L S G Sbjct: 232 -MALSHSALGERLRLLEHCMNRLSLADAAGMVAIDRQGRLIH---------------SAG 275 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R + LP + + + P +E + + L P++ T ++L P Sbjct: 276 R-----VPLPVGVGERLPGFRPHADLEEWAAHLPEGLR-PEWLHPVVAGGRTVGAVVLVP 329 Query: 306 VEQMRQLMTSQLGKVSHT-------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 +R ++L + S F ++ P R GR+ A PVL+ GE G Sbjct: 330 GRGVRNSPVARLAEQSSEADPRRSCFDNILGRSPAMREATDLGRRLATKRVPVLVEGETG 389 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLEL 414 VGK L ++A+H E GP+I NC +A + G G T N GR R EL Sbjct: 390 VGKELFARALH-GGEHLGGPFITYNCGAASKELIAADLFGHVRGAFTGATNDGRPGRFEL 448 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A+GGTL L++I + ++LQ LL+ +++G++ RL + +DV++IA T +L V Sbjct: 449 ANGGTLCLDEIGEMPLDLQPVLLRALEEGIVYRLGDTQPRRVDVRLIAMTNRNLREEVAA 508 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVS 533 RF R LYY + + IPPLR R G IP L ++ L +R R + + L L + Sbjct: 509 GRFRRDLYYRIGVTRLRIPPLRERDGDIPLLASHFCTQLAERHGVPRREFGPEVLDALQA 568 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT--EQATDDVSATRLSTSLSFAEV 591 WPGN EL +V+E+L L ++RV +LPE + QA + S Sbjct: 569 YCWPGNVRELRNVVESLLLMDSTPQVRVDELPEEILASVPQAARPAAEGAEPECPSLEAA 628 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E+ AI A G + + + LLGI R+TL+RK++++ ++ Sbjct: 629 ERRAIQKAVINFQGNLAQAARLLGISRSTLYRKVERYALE 668 >UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGL0_DESAH Length = 662 Score = 609 bits (1572), Expect = e-173, Method: Composition-based stats. Identities = 157/633 (24%), Positives = 263/633 (41%), Gaps = 20/633 (3%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 D + I I SW+ L + H+ G ++ +R ++++ Q +E E Sbjct: 23 DSQSIRTDILVSWKHSKNLGIDAHKGLHHKGDG---DALLKRSAELVSVAQPFMEVINEI 79 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +A + +D L GDP L++ GF G + IGT A L+ + Sbjct: 80 IAGSGFRIDCIDHEGFFLCSCGDPTLLKESEYNGFVTGCDVSIEAIGTNAAGLSLSLKKP 139 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 V+ +H+ L N ATP++ L G + + L LT +IA+ + N Sbjct: 140 VQVFGPEHYNINLHNLNCSATPIYTPDSELVGILNILSYDTPQNRQTLGLTTSIAKAIEN 199 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L + ++LN ++E + GVI+ ++ G + N +A +L + + + Sbjct: 200 QLALTRTVTSLKVSNSELNTIMEYLPQGVIALNKLGEVDRYNKKALEMLSIPQKSGIDQR 259 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 +L + L + ++ K E T + V+ I G +++L Sbjct: 260 KNQLKKNLSALDLS-RELRRQKEKEHTIAVGSRKKSFVVNAHSI--ENGERTLVMLEDTG 316 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 ++ L Q + S+TF + + A + VLL GE G GK L +QA Sbjct: 317 RIMSLSAVQSNRTSYTFNDITGRCAGIIKAKELATMVAPTDSSVLLVGESGTGKELFAQA 376 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLE 423 IH S R+ P++A+NC + E G + T G+ RLE A GGTLFL+ Sbjct: 377 IHASSCRSNNPFVAINCGAIPADIIESELFGYEPGAFTGAREAGKAGRLETASGGTLFLD 436 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 ++E + + Q LL+ + R+ IP+D+++I+ + DL Q RF LYY Sbjct: 437 EVEAMPLSFQVKLLRAFSSKSMVRVGGVNEIPLDLRIISASKVDLIEEANQGRFREDLYY 496 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFE 542 + F I IPPL R G I L L+ L + + + D+D L S W GN E Sbjct: 497 RIATFPILIPPLNKRGGDIRLLAKQFLKQLSAEYLRSDIYADNDFFEALQSYPWRGNVRE 556 Query: 543 LYSVIENLALS-SDNGRIRVSDLPEHL--------FTEQATDDVSATRLSTSLSFAEVEK 593 L + IE + D ++ + LP+ L + A ++ E Sbjct: 557 LRNTIERAVVIGLDQQQLTPAQLPQSLKEYWISGKLRQHAKTTLNHHPTDKKSLLKIAED 616 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 I + G I + LGI R+TL++K++ Sbjct: 617 TTIAMVLEEEKGNISRSAKRLGIARSTLYQKIE 649 >UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Chloroflexus RepID=B8GC55_CHLAD Length = 625 Score = 607 bits (1565), Expect = e-172, Method: Composition-based stats. Identities = 195/626 (31%), Positives = 314/626 (50%), Gaps = 11/626 (1%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 P I SW RC + P Q V A+ + TL ++++ED ++ Sbjct: 7 PPIQRSWMRCQ--ARGLDPATPPQTGPVNIAAW----SHLQTLARSSIEDLYQLSEHPGF 60 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 A+ I DE A I+ GD L G G E + GT A+ LA +T D Sbjct: 61 AVVICDEQATIIDVAGDSTILSLAQQSGIGYGISLLEEVAGTNAVDLALREALPYQTSGD 120 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ L ++ A P+F GR G +A+ E L + +A A+ + N L + Sbjct: 121 EHYCNWLQPFSLAAAPIFSPDGRALGALAILTRAEMQHPYALGMVIAAAQALHNQLRAER 180 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 LL E N L++L A L+S+++G+I G ++ ++ + A +L ++ ++ GR + ++ Sbjct: 181 LLNEANDQLSELYATLDSINEGLIFVGPNGEIRRLSRRVASILDINVRSAAGRPLVSVIP 240 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQ 311 P + A+++ L E ++++ + +++P+ + ++ L P E +RQ Sbjct: 241 PPPAISTALQELTTLDEQEVIWQTRSGPQAVMCSVRPVWDRSRRYLGSVITLRPAESVRQ 300 Query: 312 LMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L+ +G + + TF + R+ + R AA PVLL GE GVGK + +QAIHN Sbjct: 301 LVQQVVGARATFTFRDIIGQSEAMRQALRQARLAAAGRGPVLLRGEGGVGKEIFAQAIHN 360 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430 S RA GP++ V C L E G + ++++ GR +LELAHGG L+LE I+ L+ Sbjct: 361 ASNRAGGPFVRVACAAIPRQLLDSELFGVESSEHQAGRPGKLELAHGGVLYLEAIDALSF 420 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 + Q+ LL+ I+ G + R +R IPIDV++I T DL LV++ RF LY L AF I Sbjct: 421 DQQTNLLRAIEMGRVIRSGGKRPIPIDVRLIV-TGHDLEQLVQEGRFRADLYARLSAFTI 479 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR R + L N+ ++ L ++ + + DALA L S WPGN EL V+E Sbjct: 480 DIPPLRRRGDDVLLLANHMVQRLSEQLGRPIALAPDALAALHSYPWPGNVRELEVVLEQT 539 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 ++ + V DLP + T A + + A E++AI+ A + GGR+ Sbjct: 540 VQTTAKSVLTVHDLPPAI-ARHTTPLAMADNPRLAEAHALSERDAIVRAVRSAGGRLSRA 598 Query: 611 SALLGIGRTTLWRKMKQHGIDAGQFK 636 + LLGI R TLWRK+ ++ I + + Sbjct: 599 ATLLGISRATLWRKITRYQISRDELR 624 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 156/681 (22%), Positives = 286/681 (41%), Gaps = 55/681 (8%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAA 60 SGA + ++A SW R N V H + I ++ ++ + + Sbjct: 40 SGADPLACPHLDKMVAESWIRSRLAGVDPYKNAVNHYLHREQYEKIVKKSAFLIEVTKPL 99 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQ---QLSALGFNDGTYCAEGIIGTCA 117 + + + ++D L + L + L F + +E GTCA Sbjct: 100 FDVFKNLIHSSNYEMHLIDTAGNSLLNENSYRYLMNPLEKRDLHFTLSS--SESTTGTCA 157 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP---------VE 168 +LA + V+ +H+ L + + P+F+ + ++L + Sbjct: 158 HALALRHKKPVQLFGPEHYLWELQDIVASSAPVFNENNEVIAALSLIQHLNDSPWAEGYQ 217 Query: 169 QTTAADLPLTLAIAREVG-----------------NLLLTDSLLAETNRHL----NQLNA 207 L L AI + + LLL +S L+ N+ + + L Sbjct: 218 VLCTHTLALITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQILTTHDLLRT 277 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 L + +I+ D QGN+ +N A ++L++ + + IT L+ +L + + Sbjct: 278 TLSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAEGKD 337 Query: 268 LKHVEATFESQHQFIDAVITLKPII--ETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTF 324 L E F + ++++K ++ G +L T + G S F Sbjct: 338 LTDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKRAGTNASFHF 397 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + P + + ++ +++S +LL GE G GK LL+Q+IHN+ R GP+IA+NC Sbjct: 398 DDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YRPEGPFIALNC 456 Query: 385 ELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + + E G + T + GR ++ELA GTLFL++I + +++Q+ LL+V+ Sbjct: 457 AAIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDIQAVLLRVL 516 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + + R+ R+ +D +VIA T DL +V++ F +Y+ L I IPPLR R G Sbjct: 517 EDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTIHIPPLRTRSG 576 Query: 501 SIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 I L L + + + + ++AL L S +WPGN +L + I SDN I Sbjct: 577 DIEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIYGINLSDNSLI 636 Query: 560 RVSDLPEHLFTEQATDDVSATR----------LSTSLSFAEVEKEAIINAAQVTGGRIQE 609 LP + + S + E+E AII A + T + + Sbjct: 637 EARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNAIIMALEKTNNSVTK 696 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + +L I ++TL+R++++ + Sbjct: 697 AAKILNISKSTLYRRLRELNM 717 >UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2 Tax=Rhodocyclaceae RepID=A1K9P3_AZOSB Length = 674 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 142/641 (22%), Positives = 251/641 (39%), Gaps = 28/641 (4%) Query: 15 LIATSWERCNKLMKRETWNVPHQAQGVT-FASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 + SW+RC V G + A + R + +LT +E +E + Sbjct: 36 EVLRSWQRCRDGGVSAQSTVAGDPAGRSRLAEVRERSEHLLTQAAGIMEHVFEQIRASGS 95 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D IL GDP + + + G E GT A+ +A I + + + Sbjct: 96 MVLLADVDGVILHSLGDPDFIARAQRVALQPGASWDEAARGTNAVGIALIEQRPAEVLGA 155 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF + A P+F G L G + ++ + L A+ + L Sbjct: 156 EHFLERNGILTCSAAPVFKPCGMLAGVLDISGDYRSNQRHTMGLVRLAAQLLEKRLFEVD 215 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + ++ + S+ +G+++ G + N A L + G A + + Sbjct: 216 FARQVLIAVHARPECVGSLQEGLLAVSADGCIVGANPAAREALGITDIGPGGLAFSSVFR 275 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 + + + P + + + P V + Sbjct: 276 VSLDVFFDRSRRDPASLQMLEARRGERIYTRLKSSLPPRTEPVGGSAPARPAVTAKAETS 335 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + T A + D + + + + P+L+ GE GVGK L ++A H Sbjct: 336 EAVPRDGRVTLACLATGDSRLQLALDRAGKVIGKDIPLLIQGESGVGKELFARAFHFSGP 395 Query: 374 RAAGPYIAVNCELYGDAALAEEFI---GGDRTDN-ENGRLSRLELAHGGTLFLEKIEYLA 429 R GP++A+NC + + E GG T G + +++ AHGGTLFL++I + Sbjct: 396 RRDGPFVALNCAAIPENLIESELFGYVGGAFTGARREGAVGKIQQAHGGTLFLDEIGDMP 455 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + +Q+ LL+V+++ +T + + R +P+D+ ++ T L V++ F LYY ++ Sbjct: 456 LGMQARLLRVLQERSVTPIGSVRQVPVDISLVCATHRLLRESVQKGSFREDLYYRVNGLT 515 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 +T+PPLR R G I +V+N L E +++I + + WPGN +L +VI Sbjct: 516 VTLPPLRER-GDIGRIVSNILA-AEAGDGRQIRIGAEVMDFFERYPWPGNVRQLQNVIRV 573 Query: 550 LALSSDN--GRIRVSDLPEHLFTEQATDDVSATRLST-------------------SLSF 588 D+ IR LPE LF + R S Sbjct: 574 AVALLDDDEDEIRPLHLPEELFGADTMTEGDRHRPDERPSSVVTPLGQPAAGIATGGRSL 633 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+E EAI + GG + + LGI R TL+RK+ + G Sbjct: 634 DEIELEAIAVVMREVGGNVSAAARRLGISRNTLYRKIGRIG 674 >UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=70 Tax=Bacillus RepID=B9J2Z6_BACCQ Length = 616 Score = 603 bits (1555), Expect = e-171, Method: Composition-based stats. Identities = 144/634 (22%), Positives = 277/634 (43%), Gaps = 49/634 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I+ I+ SW RC + N F ++ + L + +++ + Sbjct: 21 DSNRINERISESWYRCKQANVNPHMNKGQKILSSNIFQDQKKKSEIFLDIAIPQIQNMRK 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + + ++D +LS +G+ QTLQ+ + F +G E +GT A+ A + Sbjct: 81 TIDELQMMALLIDPDGYVLSLSGNKQTLQRAKQINFIEGVKWTEAAVGTNAIGTALEIEE 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 A+ +H+ +W+ A P+ + G+L G + +CP+E + L + +IA + Sbjct: 141 AIMISGTEHYSVASHSWSCAAAPIHNDDGKLIGVLDFSCPIEFSHPYMLGMVTSIAHAIE 200 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 E L+ ++ L+ D + N + D S + Sbjct: 201 RECSIRVHQNE----LHLIHRFLD-------VIDSDEQVVICNHR-------DVIVSASK 242 Query: 247 AITELLTLPAVLQQAIKQAHPLK-HVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 + E + + ++ + LK +E S ++ I I +K G + Sbjct: 243 RVRERVCNWSRMKLEDLMHYGLKTKLEVPVYSNNRMIGKCIYVK------GNKQVKSFST 296 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + + TF + + + + + + V +CGE GVGK ++ Sbjct: 297 SPFINGI----------TFPGVIGTSSAFQHTLEEIKLVSPTDASVYVCGETGVGKEYVA 346 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLF 421 +AIH S R GP+IAVNC + E G G T G + E A GGT+F Sbjct: 347 RAIHENSPRKNGPFIAVNCGSLPKELMESELFGYAEGAFTGARRQGYKGKFEQADGGTIF 406 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + E+Q ALL+V+++ + + + + IP+++++I T DL LVE+ +F + L Sbjct: 407 LDEIGEVPPEMQVALLRVLQERTVNPIGSSKEIPVNIRIITATHKDLLRLVEEGKFRQDL 466 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY LH + + +P L R+ IP ++ KR + + + WPGN Sbjct: 467 YYRLHVYPLYVPSLIERKEDIP----YFIKHFCKRKNWNVVFPKSICNQFSQHTWPGNIR 522 Query: 542 ELYSVIENLALSSDNGRI---RVSDLPEHLFTEQATDDVSA-TRLSTSLSFAE-VEKEAI 596 EL +V+E + + S I ++S L + + Q ++ A + +L+F E ++++++ Sbjct: 523 ELLNVLERIYILSQGREICEKQISFLLQTMMGNQPHFELQAENKTEKTLNFREKIQRDSM 582 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I A + T G + + LL + R+T +++M+++ + Sbjct: 583 IEALEKTNGNVSLAAKLLDVPRSTFYKRMQKYKL 616 >UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Ralstonia pickettii 12J RepID=B2UEU9_RALPJ Length = 687 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 150/638 (23%), Positives = 274/638 (42%), Gaps = 32/638 (5%) Query: 15 LIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 +I S R + T N A + + + + +E +E ++ Sbjct: 42 VIEQSHRRSTTYGLQVTDNPDFSALSKAALSLAIEQNRTLYAYALPVMETLYEQISHHHN 101 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D IL GD L++ + + G +E + GT + A + G V+ A+ Sbjct: 102 IVLLTDAQGVILHAQGDKDFLEKADRVALSLGVTWSERLRGTNGIGTALVEGAPVQVSAN 161 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ V A PLFD+ G++TG + ++ A + L A ++ N L + Sbjct: 162 EHYLGVNHVLNCSAVPLFDASGKVTGVLNVSGDPGNFPAHTMALVRMSALQIENQLFAAA 221 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 HL+ L+ ++ +G++S+ G + +N A L L +A G + LL Sbjct: 222 NPDCITLHLHSRPELIGTLMEGMLSFGLDGRYRAVNRSALFQLGLTPSALAGHTLESLLG 281 Query: 254 L--PAVLQQAIKQAHPLKHVEA-------TFESQHQFIDAVITLKPIIETQGTSFILLLH 304 L PA+ V A S Q D L+P+ + Sbjct: 282 LSVPALFDHYRSATPDPLRVHAANGISLYAKVSIRQRTDCGSLLRPLSADKVG------Q 335 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 E + + + + DP+ R+I ++ P L+ GE G GK LL Sbjct: 336 EAESRAGTASPVRARATSGLGQLDTGDPEIARVISKLKKFNGRDIPTLIIGETGTGKELL 395 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTL 420 +QAIH +S R AGP++AVNC + + E G + T G L ++ A+GGTL Sbjct: 396 AQAIHEDSPRCAGPFVAVNCASIPETLIESELFGYEEGAFTGARRRGSLGKILQANGGTL 455 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + + LQ+ LL+V+++ ++T L + + IP++V ++ T +L ++ + F Sbjct: 456 FLDEIGDMPLTLQARLLRVLQERIVTPLGSAKAIPVNVALVCATHRNLRDMIARGTFRDD 515 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYY L+ + +PPLR RR A++N L + + R ++ + L L + WPGN Sbjct: 516 LYYRLNGLLVKLPPLRQRR-DFEAVLNRLL--VGEHGGQRFRVAPEVLRLLKTYDWPGNI 572 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS---------TSLSFAEV 591 +L +++ + + ++ I++ DLP+ + + A + + Sbjct: 573 RQLVNLVRSAMVMAEGDEIQLDDLPDDFLEDVRHREQPAQEPPAHDMLPVSADQATLDLL 632 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E I + GG + + LG+ R ++RK++ G Sbjct: 633 ESSLIRQVLKSNGGNVSAAARALGVSRNRIYRKLQSLG 670 >UniRef50_A5G7C5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A5G7C5_GEOUR Length = 660 Score = 599 bits (1546), Expect = e-169, Method: Composition-based stats. Identities = 148/637 (23%), Positives = 254/637 (39%), Gaps = 24/637 (3%) Query: 12 ISPLIATSWERCNKLMK---RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 +S I SW R RE N+P + + + +L +E+ +E + Sbjct: 30 VSDSIMRSWRRSIDNGVDMERENSNIPTITS-KELEGLTEKNRNLLVQSFPVMENLYEQI 88 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + D T +L GD + + + G +E GT A+ A + V Sbjct: 89 QDTSSMVILADATGVVLHSLGDTDFVDRARKVSLQPGGIWSEQFRGTNAIGTAIVEQLPV 148 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 + +H+ A P+FD G+L G + ++ + L +++ N Sbjct: 149 LVHSSEHYVTSNDFLTCSAAPIFDPYGKLLGVLDVSGDCRAYQQHTMALVRISVQQIENQ 208 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 + + ++ + + +M + + + G L N A L LD +Q Sbjct: 209 MFSIGFDSDIILQFHSRPEFIGTMYEAIAVFGRDGRLLAANRSALLHLGLDRYRAQTVTF 268 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 T L L A A P ++ + + P + S Sbjct: 269 THLFDLSLDSLLAHAGATPQPVLQLPLYGGMKVFGR-ARVSPARSAKVISHKGSPGASTP 327 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 R+ S+ ++ + D + R I R+ A PVL+ GE G GK L ++A+ Sbjct: 328 ARKPGLSERRLLA--LDALEFGDTRMRSAIDKARRVAGHDIPVLIEGESGTGKELFARAM 385 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLEK 424 H R P++A+NC + + E G G T + NG + ++ A GGTLFL++ Sbjct: 386 HLSGGRRNAPFVALNCAAIPENLIESELFGYQEGAFTGAKRNGSMGKIRQADGGTLFLDE 445 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + LQ+ LL+V+++ +T L PID+ V+ T L + RF LYY Sbjct: 446 IGDMPLALQARLLRVLQERTVTPLGGAGSHPIDISVVCATNRKLRDEIAAGRFREDLYYR 505 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ IT+P LR R + L + L + +++ DD L S WPGN +++ Sbjct: 506 LNGLLITLPTLRER-EDLRPLAQSILNEITG-LGRVIRLRDDVLDIFASHPWPGNVRQMH 563 Query: 545 SVIENLA-LSSDNGRIRVSDLPEH----------LFTEQATDDVSATRLSTSLSFAEVEK 593 +V+ L ++ I V L + L E + T + + S +E Sbjct: 564 NVLRTAVALLGEDDEISVVHLSDDFLEQYREAAPLHIESKNYLPATTVQAGTASLDHLEA 623 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +AI A + G I + LGI R TL+RKM+ G+ Sbjct: 624 QAIRQAVRECNGNISAAARRLGISRNTLYRKMRSIGL 660 >UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QTT1_9BACI Length = 614 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 133/630 (21%), Positives = 255/630 (40%), Gaps = 45/630 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D ++ IA SW C + A +R + +L + LE + Sbjct: 22 DQARMNKRIAESWYLCRQNNVNPFDGKGKIILAAPLLAERKKRNQRLLHIAMPILEKLQK 81 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 Y + L ++D +L G+ Q ++ A+ F +G E +GT A+ + + Sbjct: 82 YFQETKSILLLIDPEGYVLYAKGNQQVMEMAEAIKFVEGVKWTEDEVGTNAIGTSLRIRE 141 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVE--QTTAADLPLTLAIARE 184 + H+ W A P++D L G I ++ PV L +A A Sbjct: 142 PITIAGLDHYSVASHQWCCSAAPIYDENRELAGIIDVSYPVNHYPFHDHVLATVVATAYT 201 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + + E + N +++ D V+ + +GN+ ++ +R LR + Sbjct: 202 IEQQFHMQAKEDELELLKHACN--MKNPDSPVVICNNKGNIVWV----SRCLRTSFSNML 255 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 +++ + IK P+ H I + L+ H Sbjct: 256 DQSLENVCGD----HWVIKSKTPIYS-----SVHHDMIGYRVMLQKTENHDFNFISTTFH 306 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 FA + +I + A++ V + GE G GK L+ Sbjct: 307 -------------------FAGVIGKSAAFANVIKSCEKVAKTDATVHITGETGTGKELI 347 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTL 420 ++AIH S R P++A+NC + E G + T + G + A+GGT+ Sbjct: 348 ARAIHQNSRRKNRPFVAINCGAIPKELIGSELFGYEEGAFTGAKRTGHKGKFVQANGGTI 407 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + E+Q ALL+V+++ + + + IP+D++VI T DL LV + + Sbjct: 408 FLDEIGEIPPEMQIALLRVLQEREVVPIGGTKPIPVDIRVITATHCDLYQLVREGKLRED 467 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 L+Y ++ + I +P LR R+ IP L+ ++ + + ++ + ++ WPGN Sbjct: 468 LFYRIYVYPIKVPALRERKEDIPFLIQY----YCQKNNWPVSFSNEVIQLFMTYHWPGNI 523 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL++V+E + + + + +L + + + T ++EK ++ Sbjct: 524 RELFNVLERIRIEYGDHIPSIPELKSMFIGWENQGEHRKSEQKTLSYREQIEKNHMMEML 583 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + T G I +A L I R+T +RK+K++ + Sbjct: 584 EKTKGDIARAAAELNIPRSTFYRKLKKYHL 613 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 596 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 174/651 (26%), Positives = 271/651 (41%), Gaps = 54/651 (8%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 +SG + G+ P I SW+RC T + A V R +L Sbjct: 23 LSGETTDLPAGVRPEILRSWQRCQTGG---TDALAAGAPSVPRPDTPTRSCELLEAASDT 79 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 L+ + L + D ++ GDP T ++ + G E IGT + Sbjct: 80 LDQLGRLLDGTGAMLLLCDGEGVVIRAMGDPSTREKGREINLEVGGRWDEEAIGTNGIGT 139 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKG-RLTGTIALACPVEQTTAADLPLTL 179 A G+ V A +HF + W+ A P+ D G G I L+ +L L Sbjct: 140 AIREGRPVFVHACEHFCAGIKGWSCAAAPIRDPFGFGTIGAIDLSGGPGIFRPHNLALVA 199 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQ--LNALLES-----MDDGVISWDEQGNLQFI-NAQ 231 A ARE+ +LL E +R + L A +++ DD V+ D G + + N Sbjct: 200 AAAREIE------ALLGERHRQERERLLAAFIDAGASRGPDDAVVILDRVGRVVYSRNPP 253 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIK-----QAHPLKHVEATFESQHQFIDAVI 286 LR D G+ + +L P+ Q Q + + E + + Sbjct: 254 QGGGLR-DGLLKVGQPLLDLGPHPSDTQIVAALPPALQPSGISPLILDGERRGTVLHLPA 312 Query: 287 TLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 KP + + + G + + R+AA Sbjct: 313 RTKP----------------RPVSAEIRPRAGTAEPPL-PIVGASDIFLEAVDLARRAAE 355 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESER--AAGPYIAVNCELYGDAALAEEFIG---GDR 401 + +L+ GE G GK L ++ +H SER A P+I +NC +A E G G Sbjct: 356 AGSSILVQGETGTGKELFARLVH-ASERHKADAPFITMNCGAIAVELVASELFGHVAGAF 414 Query: 402 TDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T +GR + ELAHGG L L++I + +++Q LL+V++ I R+ R P++V+V Sbjct: 415 TGAMRDGRPGKFELAHGGVLCLDEIGEMPLDIQPYLLRVLESRAIYRVGDSRRRPVEVQV 474 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK-LRSLEKRFST 519 +A T DL V F LYY + I +PPLR R+G +P LV++ + + Sbjct: 475 VAMTNRDLMQDVSSGAFRADLYYRISTVTIEVPPLRARQGDVPLLVDHFNRAAARRLNRA 534 Query: 520 RLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA 579 L+ D A+A L +WPGN EL +V + L + R+ VSDLPE + Sbjct: 535 PLRFSDAAMALLDGWSWPGNVRELRNVCDRLHVFVRGDRVEVSDLPEPMRRAPTLPSRPG 594 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + S EVE+ AI A G + ++A+LG+ R TL+RKM+Q+GI Sbjct: 595 EQ-----SLDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQYGI 640 >UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WXM6_METML Length = 642 Score = 596 bits (1537), Expect = e-168, Method: Composition-based stats. Identities = 157/633 (24%), Positives = 266/633 (42%), Gaps = 35/633 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASI---YRRKKAMLTLGQAALEDAWEYM 68 I+ I SW RC L N P + VT + + + +L L Q +E E + Sbjct: 30 IAEAIERSWRRC--LANGIDTNSPQSLEVVTAQELALKREKNQQLLKLAQPEMETLNEQI 87 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 A + + D+ IL G L + + + G E GT A+ I A+ Sbjct: 88 AHTRNVVILTDDEGVILHSLGGHHFLNEEQRIALSAGASWNENHRGTNAIGTVLIEQSAL 147 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 +HF + + A P+F ++ +L T+ ++ + L L A+ + N Sbjct: 148 TVQGAEHFMAYHHSLSCSAVPIFGAENQLIATLDVSNDFNMSQQHTLALVKMSAQMIENR 207 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L S E H + + ++ +GV + + G L N L L+ + Sbjct: 208 LFMASHKGEIALHFHARPEFIGTLWEGVAIFTDSGQLVATNRSGQFQLSLNTSN------ 261 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 QQAI + A+ Q D +I P+ G + + P+ + Sbjct: 262 -------TASQQAINFNNLFDVPFASLLRQVGSTDKLI--VPLRLNNGARIYVQMEPLNK 312 Query: 309 MRQLMTSQLGKVSHT----FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 Q+ T+ V T + D + R + +Q P+L+ GE GVGK L Sbjct: 313 KPQISTTPPATVKRTSAANLDLLDSGDAKISRAVQQIKQVLSRDIPILIQGETGVGKELF 372 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTL 420 ++AIH S + GP++AVNC + + E G + T G ++E A+GGTL Sbjct: 373 ARAIHEASAQHKGPWVAVNCAALPEGLIEAELFGYEEGAFTGARRKGSPGKIEQANGGTL 432 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + + LQ+ LL+V+++ +T L + + IP++ +I+ T L VE F Sbjct: 433 FLDEIGDMPLSLQARLLRVLQERTVTPLGSTKTIPVNFSLISATNLKLKEKVESGEFRSD 492 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYY L+ + +PPLR R + AL++ L + ++I + A + WPGN Sbjct: 493 LYYRLNGLSVALPPLRER-SDLQALIDVIL---NIEQAGAIEITPEVRAIFQAHTWPGNI 548 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS---ATRLSTSLSFAEVEKEAII 597 +L++V+ +D I L + E + S + + ++ +AI Sbjct: 549 RQLHNVLRTALALADGAAISTLHLTQDFIDEMSLSKPSLIANVATANPVDLDDLTNQAIR 608 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A Q G + ++ LGI R TL+RK+K GI Sbjct: 609 RAMQTEAGNVSAVARQLGISRNTLYRKLKTMGI 641 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 155/641 (24%), Positives = 282/641 (43%), Gaps = 28/641 (4%) Query: 9 GRGISPLIATSWERCN--KLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAALED- 63 G+ + SWE+C +L + T +P ++G M L L D Sbjct: 25 STGVREEVLASWEKCRERRLDAKTTVIKTLPTISEGEKLP-----NPIMSFLRDDILPDI 79 Query: 64 ---AWEYMAP-RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 ++ + + ++ A + S+ G+ L+QL+ GT +E IGT A S Sbjct: 80 TKLLYQLLQECQGALFWVYQRNAIVFSQRGNQDFLRQLNQHNIGIGTCLSEEYIGTTAFS 139 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPL-- 177 L + + +H+ +L +A D G I + P E T L Sbjct: 140 LVDKPHEESWVIGHEHYLDLLTPYATYTYYQEDFYGHSYAFIIV--PKEAFTDGLLSYFR 197 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 ARE +SL E++ N L E+ ++ VI D G + N + ++ + Sbjct: 198 LFNKARESTIRCYRNSL--ESDLKSELFNQLSEARNEAVIFIDSFGKIVDANQKFSKWVN 255 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPI-IETQ 295 ++ + + +TE+L + ++ + E + V + +KPI + + Sbjct: 256 VEKAELKDKELTEVLPEMQRILSCLETGKTITSEEIQLSKLPPHMQFVQMDVKPIESDKK 315 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 T I++L + RQ M+ + +TF + + + AA SS V+L G Sbjct: 316 ITGLIIILMDNKTFRQRMSKISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSG 375 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSR 411 E G GK L +QAIH S R GP++++NC +A E G G T + G + + Sbjct: 376 ESGTGKELFAQAIHKASPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGK 435 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E A+ GT+FL++I + + +Q+ LL+V+++ + R+ + P+DV++I T +L + Sbjct: 436 FEYANTGTIFLDEIGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKM 495 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530 V+ F LYY ++ I +PPLR R IP +V+ L + +++ + + +A Sbjct: 496 VKDGSFRLDLYYRINVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAF 555 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT-EQATDDVSATRLSTSLSFA 589 L++ +W GN EL + IE ++ + + LP + F E+ D L + Sbjct: 556 LINHSWEGNLRELRNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYE 615 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EK+ ++ G ++ +GI R+TL+RK+K + + Sbjct: 616 FEEKKKMLALMIKFNGNKSAVAEEIGISRSTLYRKLKSYNL 656 >UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing protein n=12 Tax=Proteobacteria RepID=B2ILN3_BEII9 Length = 680 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 262/631 (41%), Gaps = 14/631 (2%) Query: 12 ISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + LI SW RC+ N P + T ++ ++ + A +++ Sbjct: 37 LRDLIDQSWRRCHDADIDHRRNQAPPPVKQDTLHALRDECAELIEASAPVMASARDFLGE 96 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + T ILS+ GD + G +E GT A+ A G+ ++ Sbjct: 97 TSTVMVLTNSTGLILSQEGDVSLRGAAENVHLLPGANWSEFTCGTNAIGTAIEIGRPIQI 156 Query: 131 MADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +++H+ + W+ A+ + + G G I ++ + L L +A A + + + Sbjct: 157 HSNEHYCSGIKRWSCSASIIKNPCDGSTLGVIDVSGLSHSYSRHSLALVVATAGRIESRI 216 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQGRAI 248 + ++ L DG++ D G N AA +L L A S R Sbjct: 217 AQMEMDLRYRLLEGCMDRLTAHSTDGIVVLDRHGRAIKANTHAAVMLADLGAPQSLTRNN 276 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 LTL + + P + + + + I QG S L Sbjct: 277 LFSLTLDWRRGHDLPEHLPPWIQKEWLTPMNAGGKRLGVILTIPNRQGAS--AKLARAST 334 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 L S+ + F + P RQ A+SS PVLL GE GVGK + ++ + Sbjct: 335 RIALPPSEPERTR-IFPKLVGQAPALLLAAARARQIAKSSVPVLLLGETGVGKEVFARDL 393 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEK 424 H S GP+IA+NC L E G T G + ++E A+GGTLFL++ Sbjct: 394 HEASAVGKGPFIALNCGGLSRDLLTSELFGYAEGSFTGARRGGMMGKIEAANGGTLFLDE 453 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L +LQ L+V+++ I R+ + ++ +++A T DL M + +RF LYY Sbjct: 454 IGELPTDLQPLFLRVLEEREICRIGEVQPRKVNFRLVAATNRDLRMETQASRFRMDLYYR 513 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L ITIPPLR R IP L + K++ + I D + L WPGN EL Sbjct: 514 LSVISITIPPLRERSEDIPLLAEHFTALFTKQYGLPSRHISADIMNALQQHDWPGNIREL 573 Query: 544 YSVIENLALSSDNGRIRVSDLPEH---LFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 +VIE + L+S N + +DLP L + + S T S E+E I+ Sbjct: 574 RNVIEGILLTSANETLTKADLPPEFSALTNKLPSTGNSDTSSSALTPIENAERETIVRML 633 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + ++ LGI ++TL+ KMK ++ Sbjct: 634 RTHHGNMTAVARELGIAKSTLYVKMKIFQLE 664 >UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HEU6_ANADF Length = 637 Score = 587 bits (1513), Expect = e-166, Method: Composition-based stats. Identities = 171/639 (26%), Positives = 272/639 (42%), Gaps = 28/639 (4%) Query: 10 RGISPLIATSWERCNKLMKRET--WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 G+ P IA SW R L + + P A G L + L Sbjct: 7 EGVRPEIARSWTRVRDLYRVDPALRRAPLDAGGEVLRRRGE--DETFELARPVLAQLSAR 64 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + AL +LD +LS GDP + +L+ L G E + GT A + Sbjct: 65 LGETGHALALLDAEGRVLSIGGDPHVVARLAELNLTPGASWREEVAGTNGAGTALAERRP 124 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 V+ A +HF + WA A P+ G L G + + P + + +AIA V Sbjct: 125 VEVFASEHFVEAWHPWASAAAPIVAPGGELVGLVQVTGPWDTREPQGVVAAVAIAAAVEE 184 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L + L + + L A S DGV++ D +G + N A R L + R+ Sbjct: 185 RLRARAELRD-ELVRHALRAA-RSSGDGVVAVDARGRVLAANDAARRRLAFEGGELP-RS 241 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVIT--LKPIIETQGTSFILLLHP 305 E + +A ++ + + + + +V+ +P+ + + P Sbjct: 242 TRERIVAALHGSEATREDELTVEWPGAGDERRRVVCSVVAHERRPV-----GALLFAAAP 296 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + + Q + F + + R + AAR+ PV+L GE G GK L + Sbjct: 297 AGRASRGAARQRLAARYGFEAILGGSARLRTALDLAEVAARNDLPVVLHGESGTGKELFA 356 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLF 421 IH RA P++A+NC A + E G + T G+ R E A GGTLF Sbjct: 357 HGIHAGGARADEPFVALNCGAIPAALVEAELFGYEPGTFTGAQREGKAGRFEEADGGTLF 416 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L + Q+ALL+V+++ + RL P+DV+++A T L VE RF + L Sbjct: 417 LDEISELPPQAQTALLRVLQESEVVRLGGSAPRPVDVRIVAATNRRLYDQVETGRFRQDL 476 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGND 540 Y+ L+ + IPPLR R +P L LR E+R L++ +++ A L++ WPGN Sbjct: 477 YFRLNVLHVDIPPLRDRSEDVPLLARAFLREAEERMGRAGLELSEESKALLLAHPWPGNV 536 Query: 541 FELYSVIENLALSSDNGRIRVSDLP------EHLFTEQATDDVSATRLSTSLSFAE---V 591 EL +VI A + RI +DL A + R L+ AE Sbjct: 537 RELRNVIMRAAAVASGARIEPADLRLGPARPAAAPARPAAPSPAVERPPQPLAAAEGEGP 596 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+E ++ A +G I +A LG+ R TL+R++++ GI Sbjct: 597 EREELVAALDASGWNIARTAASLGVSRMTLYRRLRKFGI 635 >UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas RepID=Q4UYV5_XANC8 Length = 680 Score = 584 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 152/646 (23%), Positives = 269/646 (41%), Gaps = 39/646 (6%) Query: 10 RGISPLIA---TSWERCNK--LMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 R I+PL A SW RC + + E P + +R +L + + +E+ Sbjct: 52 RDIAPLAAPLSRSWRRCLEDYALLPEALPDPMVHDALHVRERQQRLGDVLRIARVEMENL 111 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 +E +A A+ D A +L DP L++ +G G AE GT L A Sbjct: 112 YEQIAGSGYAVIFADADATVLHSVHDPTLLREFRQVGLFAGASWAERHQGTNGLGTCAAE 171 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQT----TAADLPLTLA 180 AV +H+ + C+ P+ D+ G L + + P Q + L Sbjct: 172 RTAVSVHRGEHYLTRHLPLSCCSAPILDAHGGLLAVLDASTPNAQDGKQIQRHTVALVSM 231 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-LD 239 A ++ + + + + +I+ G + +N L LD Sbjct: 232 SAAQISRSHFLNQFGHAFILRFHSRPEFAGLLHEALIAIGADGRVLAVNEAVLEQLGKLD 291 Query: 240 ATASQGRAITEL--LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + GR I+++ L + +A A L + + + P Sbjct: 292 RSQLVGRDISQVMQLDFDTIEHRAGSDAGTLWSIRCACHGRR---FYALVRPPRARPALP 348 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + P + ++L H DP+ R + + A +LL G+ Sbjct: 349 AVGGPAQPATE------TELNPGEH-----VGSDPRMRHNLANALKLAAHRVSILLRGDT 397 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLE 413 G GK ++A+H S A+G ++A+NC +A + E G R GR +L Sbjct: 398 GTGKEEFAKAVHRGSPWASGAFVAINCAAIPEALIESELFGYARGAFTDAAREGRHGKLL 457 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 A GGTLFL++I + + LQS LL+V+++ +T L + R +P+++ VI+ + DLA V Sbjct: 458 QASGGTLFLDEIGDMPLPLQSRLLRVLEEQCVTPLGSERAVPLELHVISASHRDLAQRVS 517 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 F LYY L+ + +PPLR R L+ LR ++I ++A+ +L+S Sbjct: 518 AGEFREDLYYRLNGVVLHLPPLRER-SDKAELIRTLLREENNERG--VRISEEAMHKLLS 574 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD------DVSATRLSTSLS 587 AWPGN +L +V+ A+ + IR+ +LP+ + + V+A + ++ Sbjct: 575 YAWPGNLRQLRNVLRTAAVLCSDAVIRLPNLPQEIVDAGSAPCLVDGRAVAADDMPGRVA 634 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + E+ + + + + LGI R TL+RK+++HG++ G Sbjct: 635 LDQAERLVLQQQLERHRWNVSRTADALGISRNTLYRKLRKHGLETG 680 >UniRef50_B2IEK7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Beijerinckiaceae RepID=B2IEK7_BEII9 Length = 689 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 159/655 (24%), Positives = 256/655 (39%), Gaps = 42/655 (6%) Query: 12 ISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + ++A SW+RC+ + + V F R K +L LE+A Sbjct: 45 VRDIVANSWKRCSAIGIDPQRPGSCAILETVEFERRLRGSKVLLNAASDILEEANTLFEG 104 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 L + D IL GD +T+ + G +E GT + S + V Sbjct: 105 TGSMLLLTDVDGVILRAIGDTKTIDAGHDINLVVGADWSENKAGTNGIGTTLASHRPVLI 164 Query: 131 MADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +HF + NW +P+ G + G + ++ L + +AR + +L Sbjct: 165 YGPEHFCSLTKNWTCVGSPVRHPLSGEILGLVDMSGRKCTFQQQHLAFAVMVARRIETVL 224 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + S DGV+ D G + + QA R+L L AT G ++ Sbjct: 225 TVHFEIERRKLLEYSAQMTRGSWSDGVVIVDRFGKVLSTDEQAPRLLALRATH--GERLS 282 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L L + ++ + P+ +++ P Sbjct: 283 ASLNAERPLLRPKGDGRSFD-----LSVSAEYGIDADNVMPVHHQGELIGAVIIAP---R 334 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + K S F + I R+ A PVL+ GE GVGK L ++AIH Sbjct: 335 TAPAVATALKQSRAFDPIVTGCATVLDTIQRARRLAAYQAPVLIEGETGVGKELFARAIH 394 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKI 425 + S A+GP++A NC +A E G G T G + R E A+ GTL L++I Sbjct: 395 DASPCASGPFVAFNCGAVSRDLIATELFGYVKGAFTGAATTGNIGRFERANHGTLCLDEI 454 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L ++LQ LL+V+++G + R+ P+ V++IA T DL VE+ RF R L Y L Sbjct: 455 GELPLDLQPFLLRVLEEGTVYRVGDATPHPVKVRLIAMTNRDLREEVEKGRFRRDLLYRL 514 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELY 544 + + +PPLR R+G L + L L K+ L + D L + WPGN EL Sbjct: 515 NVSTLRVPPLRKRQGDAVLLAQHFLDQLSKKHGFGLRRFAPDVLDLFKTYGWPGNIRELR 574 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTE-------------------------QATDDVSA 579 + +E+ L D I LP+ + + +AT Sbjct: 575 NAVESALLLCDTPVIGRGWLPDAILEDHAAQAAPAQPVATQPIFMPPGPMAYEATGYPPG 634 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 ++K I++ + I + LGI R+TL+R+M+ +GID + Sbjct: 635 IATPRGSDLRAMDKAHILSVLERYQWNISLSAGALGIARSTLYRRMQAYGIDMHR 689 >UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Citreicella sp. SE45 RepID=D0D5X9_9RHOB Length = 647 Score = 583 bits (1504), Expect = e-165, Method: Composition-based stats. Identities = 155/641 (24%), Positives = 253/641 (39%), Gaps = 29/641 (4%) Query: 8 DGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 + I SW R ++ T + A + + AA Sbjct: 16 RSDHVRDDILASWLRSMEMGVDAATLASRKISDEDEIALRRQHNAHLRRAASAAFRRLEP 75 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 +++ + + + D+ I+ GD L + G E +GT + A +G+ Sbjct: 76 HLSDAKSIMLLADDQGVIIDAIGDASVLDDGQGIHLEVGGQWNEKTVGTNGIGTALKTGK 135 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 + A +HF + + W P+ + + G + L+ P + ++ L LA ARE+ Sbjct: 136 PMYVHAAEHFVEGVQAWTCAGAPIRNPFDNSVIGVVDLSGPPDIFRRHNIALVLAAAREI 195 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L T L + D+ V+ D G + F G Sbjct: 196 EIALAEQQRQDRTQLLEAFLQSKYSQADNSVLLLDRNGRILFRRGVDETTFPSSDKLLVG 255 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 + + L L A + + P E +++ L L Sbjct: 256 QKL--LPDLEAFNAKDLPTLLPPNVEAQGLERL------------VLDNDYRGAALFLKC 301 Query: 306 VEQMRQ-----LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 +R+ VS H+ P+ I +AA+++ VL+ GE GVG Sbjct: 302 DRSLRRPEIGARRIQPRPNVSEEPIHIVCASPKMLEAIELAERAAQANVSVLIQGETGVG 361 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAH 416 K L ++ IH+ R PY+ VNC + + E G G T GR + E A+ Sbjct: 362 KELFARLIHSRLGRPDSPYVPVNCAAISNDLIGAELFGYVDGAFTGAARGGRAGKFEQAN 421 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GG L L++I + +ELQ LL+ ++Q I R+ + P+DV+++A T DL +E+ + Sbjct: 422 GGLLCLDEIGDMPIELQPYLLRALEQRAIYRMGDSKRRPVDVRLVAMTNRDLRQEIEKGK 481 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCA 535 F R L+Y + I +PPLR R I AL+ + K + DAL L S Sbjct: 482 FRRDLFYRIGVVTIEVPPLRERGSDILALLEHFSDHFAKETGRPKMSFGADALKMLASYR 541 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHL---FTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL + ++ + L + + V DLP L F E D + + S +E Sbjct: 542 WPGNVRELRNAVQRIYLVCSDPVVTVKDLPPELRDDFDESEEDSLESILSGNSGDLESIE 601 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 AI G + ++A+LGI R TL+RKM+Q+ ID Sbjct: 602 ASAIRRTIAAEKGNLTRVAAVLGISRPTLYRKMRQYRIDRS 642 >UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escherichia coli RepID=Q659Z3_ECOLX Length = 649 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 200/618 (32%), Positives = 337/618 (54%), Gaps = 14/618 (2%) Query: 15 LIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 ++ SW++C K WN+P +A G T +I+ R + + + Q +ED + A Sbjct: 36 VMLRSWQKCLKHCDPRHWNMPVKASGQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLA 95 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 I+D +LS N QL LG G AE IGT SL + + + Sbjct: 96 FLIIDPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAE 155 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAA-DLPLTLAIAREVGNLLLTDS 193 HF + L +A A P+ D G + G I C +E T L + + A E+ N + ++ Sbjct: 156 HFSEQLHCYAMSAAPVIDYYGNIHGYI--VCIIETTAELVKLKTSYSCATEIANYIYIEN 213 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 N+ L Q NA++E MDDG I W+ + +N+QA +L +D + G+ I + Sbjct: 214 EQKLINKVLCQHNAVIECMDDGFICWNSHSLITMVNSQAQTLLNIDKESLIGQNIRKGFV 273 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 P +L +AI Q + L + E + +FI+ ++TL+P+ + SF+L LHP++++R+++ Sbjct: 274 FPPILNEAITQRNKLSQKQIVLECRGEFIELMVTLRPLSDG---SFLLFLHPLDKIRKIV 330 Query: 314 TSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 Q+ + TF + ++++ R+A +S P+L+ GEEGVGK L+ AIHNES Sbjct: 331 QQQISTNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNES 390 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 E+ GP+I+V+C++ + E +G D + S+ ELAH GTL+L+K+EYL+ E+ Sbjct: 391 EQRDGPFISVDCQMLSPENILHELLGSDVGPS----PSKFELAHNGTLYLDKVEYLSGEV 446 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 QS LL+V+K G++TR D+ RLIP+ ++I T++ L V+Q FSRQLYY + EI I Sbjct: 447 QSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSSSLREYVQQGAFSRQLYYEISMNEIEI 506 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 PPLR RR + ++++ + ++R ++ I DA + L+ WPGN E + +E + + Sbjct: 507 PPLRKRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNRMEKVFI 566 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA 612 + + + + ++P + ++ D L+ S AE+E +AI + +V + + + Sbjct: 567 NCNRLVLGLENIPLDIRQNNSSGDDDIPHLT---SLAELEMQAIEHTCRVCEWNLTKAAE 623 Query: 613 LLGIGRTTLWRKMKQHGI 630 +L IGRTTLWRK+K + + Sbjct: 624 VLKIGRTTLWRKLKIYNL 641 >UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9V6_ALHEH Length = 642 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 149/642 (23%), Positives = 256/642 (39%), Gaps = 29/642 (4%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 G+ + SW+R + F + ++ LT + ALE Sbjct: 17 GETPTGVRDEVLASWQRSLDNNVPVDRSQTQALSDGEFLRVRQQSGPFLTAARPALEQGR 76 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 +++ + + + +L GD + ++ +G G EG IGT A+ A S Sbjct: 77 RFLSEARAMVMLSNAHGTVLETVGDRRVIEHGQDIGLCRGGLWDEGHIGTNAIGTALASQ 136 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIARE 184 Q V+ +H+ + W A P+F R + G + L+ P E L +A+AR+ Sbjct: 137 QPVQIHGYEHYCCRVQRWTCAAAPVFSPTTRRILGVVDLSGPAESFNPQSLAYVVAVARQ 196 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L+ + L V+ G + N Q R + + Sbjct: 197 IEGGLIQATEADHRRLIDRFLGMGRRWKHRDVLVVSRSGVIVHGNEQVRRQISRASRNL- 255 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLL 303 L + L + A + ++P+ ++ + IL Sbjct: 256 ------FFENTIPLLRDTPAEEWLDKLHAQLPT--------ADIEPVTVDGEHLGVILAP 301 Query: 304 HPVEQMRQLMTSQLGKVS---HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + +G+ + + D P R R+ A + P+L+ GE GVG Sbjct: 302 RQGRTGIRPRNRDMGEHPSDGFSLDTLIGDSPAMRAACDKARRLAATDAPILIEGETGVG 361 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAH 416 K L +Q IH S GP+I VNC + E G G T + GR +LE A Sbjct: 362 KELFAQGIHALSM-LTGPFIPVNCGALPKDLIGGEMFGYVGGAFTGASQEGRPGKLEAAD 420 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTL L+++ + ++LQ LL++++ GV+ R+ + + + ++++ T +L +E R Sbjct: 421 GGTLCLDEVSEMPLDLQPTLLRILEDGVVYRIGSHQPRRVRARLLSMTNRNLPEEIESGR 480 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCA 535 F + L+Y + A + IPPLR R I L LR R + +A+ L+ Sbjct: 481 FRQDLFYRIAALRLRIPPLRERGDDIALLAEYYLRQQATRSGRTPQSLSAEAMDALLRYH 540 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 WPGN +L + I A +D I V LPE + T +L A VE+ A Sbjct: 541 WPGNVRQLRNAITTTAALTDAATIDVEALPEEILTPA---PAPTPGEDGNLQLATVERAA 597 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 I A + G + + LGI R+TL+ ++++ I + +R Sbjct: 598 IEQALRRCEGNVSRAARQLGIARSTLYCRIQEQHIPIPRRRR 639 >UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pantoea sp. At-9b RepID=C8Q755_9ENTR Length = 661 Score = 579 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 220/653 (33%), Positives = 347/653 (53%), Gaps = 40/653 (6%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 D I P + SW RC +L++ + W A+G+TF S+ R + ML + +ED +EY Sbjct: 27 DRPDIKPWLKESWLRCRRLLRHDHWPQQLYAKGITFESLCRNQSEMLNISSPIIEDIFEY 86 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + +CA+F+ DET C L P +L+ LG + Y EG++G A+S A + + Sbjct: 87 LDAPDCAIFVTDETGCTLKFYATPSMAIRLTPLGIRESIYWREGMMGNNAISSALLLHET 146 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA--LACPVEQTTAADLPLTLAIAREV 185 + +HF + L + CA P+FDS L G + L E A L L +I +++ Sbjct: 147 LSIKGYEHFNRHLHPFEICAAPVFDSDSTLMGAVGVILLTGHESAPALGLALVHSIEQQI 206 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L TD +LAE+N+HL++++ALL+ +++GV++WD +G + ++N + + + + G Sbjct: 207 TAKLNTDLVLAESNQHLSEVHALLDGVEEGVLAWDNKGTILYLNINGSDLFGVKSEKILG 266 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLL 303 + I +++ LP + AI ++ E E FI I+LK + TS +I LL Sbjct: 267 KNIHDIIKLPQSILTAIAHNREVELFETAIEFGGAFISLAISLKIVKGPNNTSDRYIALL 326 Query: 304 HPVEQMRQLMTSQLG-KVSHTFAHM--PQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 HP++++R+L+ G TF + RR++ +QAA+ VLL GEEG+G Sbjct: 327 HPIDRIRELVHRHSGIGARLTFDDLDYVGTSNTIRRVVRLAQQAAKGRGSVLLHGEEGLG 386 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL 420 K+ L+QAIHN SER P+I +NC+ ++ EF+GG +++ +S+ ELA GGTL Sbjct: 387 KSYLAQAIHNASERQDKPFITINCQAMPRETMSSEFLGGIVNGDKH-VISKFELAKGGTL 445 Query: 421 FLEKIEYLAVELQSA---------------LLQVIKQGVITRLDARRLIPIDVKVIATTT 465 LE +EYL E+Q+A LL +P+DV++I TT+ Sbjct: 446 LLENVEYLTTEVQTALLQLLKTGLLSKANQLL----------------VPLDVRLITTTS 489 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 D+ V++NRF R L Y L +F+I IPPLR R IP LV L+ + + L + + Sbjct: 490 VDINQYVDENRFRRHLLYELQSFDIHIPPLRERSEDIPPLVKRYLKIMSREVDKNLTLSE 549 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 DAL L AWPGN+ EL +V+E SD IRV D+P L E+ D + + Sbjct: 550 DALQLLTRYAWPGNNRELRNVLERAFSYSDGAMIRVKDIPLTLL-ERVRDLATVAPSNGL 608 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 S ++E++A+I AA G+ +++ L I RT+LWRK+K I +K R Sbjct: 609 HSLNDMERDALIKAAVQFQGKAIKITQALKISRTSLWRKLKAFNIHLEDYKTR 661 >UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 Tax=Rhizobiales RepID=A8IDE1_AZOC5 Length = 647 Score = 577 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 151/642 (23%), Positives = 261/642 (40%), Gaps = 42/642 (6%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G+S + SW+R L A + +++ + AL+ + ++ Sbjct: 20 PVGVSASLLASWQRSRTLGVGAGRAEAPLADEPEIFRRRSQNASLVGAARPALDRSTRFL 79 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 A + + D + I+ GDP+ + + G E IGT A+ A G++V Sbjct: 80 ADAASMMILADASGFIVETAGDPRVMDKGRRNHLETGGRWDEATIGTNAIGTALADGRSV 139 Query: 129 KTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + +HF + + W ATP+ G L G + ++ P L L +AI +E+ Sbjct: 140 EICGAEHFCEEVQRWTCAATPVRHPLDGELLGVVDISGPAASFNPQSLSLAVAIGQEIEA 199 Query: 188 LLLTDSLLAE--TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L + + RH ++ + + ++ D +G L +A + G Sbjct: 200 SLGRAAKMEHEVLLRHFVSKRSIW--LSEDILVVDRRGMLVHAAHKA----GSTGSGLAG 253 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 I+Q EA + + + +++LH Sbjct: 254 ---------------DIRQMIGAASQEAWEANCRRRFPNASLEVVKRDDAVVGCLIVLHT 298 Query: 306 VEQMRQ---LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + + G+ F + +DP + R+ A + P+L+ GE GVGK Sbjct: 299 TRRRSASPAAVPRPAGEDGLAFEQILGNDPALHAVRERARRLAANRLPILIEGETGVGKE 358 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGG 418 L ++AI S GP++ VNC +A E G G T + GR ++E A GG Sbjct: 359 LFARAIKGASPDPDGPFVPVNCGGMARELIASELFGYAKGAFTGADEHGRAGKIEKADGG 418 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 L L++I + ++LQS LL+V++ GV+ R+ ++++++A T DL VE RF Sbjct: 419 ILCLDEIGEMPLDLQSYLLRVLEDGVVYRVGEHEGRRVNIRILAMTNRDLLAEVEAGRFR 478 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWP 537 R LYY + A + IPPLR R I L + R L AL R+ + +WP Sbjct: 479 RDLYYRIAAARLRIPPLRERGADIVTLAQTFAAAAASRLGRSSLVFSAAALDRMQAYSWP 538 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS----------ATRLSTSLS 587 GN EL +V++ L ++ R+ SDLP + + + Sbjct: 539 GNIRELRNVVDTLVALAEGDRLNESDLPPEVLAAPSPSRAPISRPLNNGSEGSPPPPGAD 598 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+ AI+ GG + E + LGI R+TL+ ++ ++G Sbjct: 599 LKAAERAAILAQVTACGGNLTEAARRLGIARSTLYVRLAEYG 640 >UniRef50_A1VK76 GAF modulated sigma54 specific transcriptional regulator, Fis family n=20 Tax=Proteobacteria RepID=A1VK76_POLNA Length = 683 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 134/653 (20%), Positives = 245/653 (37%), Gaps = 41/653 (6%) Query: 14 PLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 LI S R R+ A K +L +E E +A Sbjct: 28 NLIMESHTRSKAYGIDRDDIPDFSPESPARLAQGLDENKFLLEHAMPVMETLHEQIANTH 87 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + +L GD L++ + G +E GT A+ A V Sbjct: 88 NMVLLTASNGLVLHSLGDMDFLEKAMQVALVPGVCWSEKSKGTNAIGTALTEELPVTIRG 147 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 +HF P+FD G++ G + + + L + + N + D Sbjct: 148 SEHFMHANQFLTCSCAPVFDPYGQIIGALDVTGDQRNFHQHTMALVRMSVQMIENHMFAD 207 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 H + + L ++ +G+ + +G N A L + A +G + L Sbjct: 208 IFPTAVRIHFHTRSEFLGTLVEGIAVFSHEGRFLSANRSAQFQLGMSFNALKGHTFSSLF 267 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP--IIETQGTSFILLLHPVEQMR 310 +P ++ + L + + I +KP + +P + Sbjct: 268 DIPISRLHELR-GNALTKPQQFVLHNGVSVWCRIKMKPLSLWSDGQAINTAASNPFKPPE 326 Query: 311 QLMTSQLGKVSH------------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + + T ++ DPQ +I P+++ GE G Sbjct: 327 AKNYAGMAPAAETGFSPARKVQLSTLHYLNTGDPQVATVIQKLSMVRGRDIPIMILGETG 386 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLEL 414 GK LL+QAIH +S+RA P+++VNC + + E G + T + G +++ Sbjct: 387 TGKDLLAQAIHGDSDRAGHPFVSVNCASIPETLIESELFGYEEGAFTGAKKKGATGKIQQ 446 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A+GGTLFL++I + LQ+ LL+V++ ++ L A R + +DV VI T +L ++ + Sbjct: 447 ANGGTLFLDEIGDMPRHLQARLLRVLQDKKVSPLGAGREVEVDVAVICATNKNLKEMIVR 506 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSC 534 F LYY L+ + +P LR R ++ L+SL ++ I D + + Sbjct: 507 GEFREDLYYRLNGLVVRLPALRHRT-DFEVVMQKILKSLC-ENGAQIGISADVMTLFHTH 564 Query: 535 AWPGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFTEQA--------TDDVSATRLSTS 585 WPGN +L++++ + G I+ + LP+ E SA + Sbjct: 565 QWPGNFRQLHNLLRTAVVMVGCEGVIQRNHLPDDFLEEHEHVLQAVAQPSPSSAAAPENA 624 Query: 586 LS----------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + +V A+ Q G + + LG+ R T++R+ +Q Sbjct: 625 MPNMPGDTDGQRLQDVALVAMTKMLQHHKGNVSAAAKALGVSRNTVYRRKEQL 677 >UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LG66_RHOVA Length = 651 Score = 575 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 154/631 (24%), Positives = 252/631 (39%), Gaps = 28/631 (4%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECAL 75 IA SWER A + L ALE + E + + Sbjct: 27 IAASWERSRSFGVGTALARAPLADEPEIFRRRSLNASFLAASHPALERSREMLRDAASMM 86 Query: 76 FILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQH 135 + D T +L GD + ++Q G EG IGT A+ A + V+ +H Sbjct: 87 ILADRTGFVLETAGDGRVVEQGKGNALQTGGGWQEGAIGTNAIGTALAERRPVQVTGAEH 146 Query: 136 FKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 F + + W+ A P+ G L G + ++ PV + L AI RE+ L + Sbjct: 147 FCEDVQRWSCAAAPVHHPIDGELLGAVDISGPVATFNPQSMALAAAIGREIEATLEKAAK 206 Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 L + L+ + + ++ D +G L A R + + R + ++ Sbjct: 207 LDHEILLRHLLSKRSTWLSEDILVIDRRGYLVHSTETAMRKIDTASPDDLPRVLRRIIGS 266 Query: 255 PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMT 314 + ++ F + I +K E G +LL + Sbjct: 267 ASAEAWE-------RNCRDRFPNAGLEI-----VKSDGEVAGCLIVLLGKRSLPASPAIA 314 Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + F + D R + R+ A + PVL+ GE GVGK L ++AI S Sbjct: 315 RAPKPAADAFDDIVGDSAVMRDVRERARKLAANPLPVLIEGETGVGKELFARAIKTASAC 374 Query: 375 AAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAV 430 A+GP++ VNC +A E G G T + GR ++E A GG L L++I + + Sbjct: 375 ASGPFVPVNCGGMARDLIASELFGYVKGAFTGADGNGRPGKIEKADGGILCLDEIGEMPM 434 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 +LQS LL+V++ G++ R+ P+ +++++ T DL V RF R L+Y + A + Sbjct: 435 DLQSYLLRVLEDGIVYRVGDHEGRPVSIRLVSMTNRDLMDEVGAGRFRRDLFYRIAAARL 494 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIEN 549 IPPLR R + L R +DAL L WPGN EL +VI+ Sbjct: 495 RIPPLRERGDDVLVLAERFAGRTAARLGRATPSFSNDALMLLRHYGWPGNVRELRNVIDA 554 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATD----------DVSATRLSTSLSFAEVEKEAIINA 599 + + RI V LP + + T L E++AI+ Sbjct: 555 ILALCETDRIDVEHLPLEMRMCDKASHRTCAEPAAAPKAPTVLPPRRGARTPERDAILAE 614 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + G + E + LGI R+TL+ ++ ++G+ Sbjct: 615 VEACAGNLTEAARRLGIARSTLYVRLAKYGV 645 >UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Gammaproteobacteria RepID=A6VWJ2_MARMS Length = 659 Score = 574 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 155/650 (23%), Positives = 272/650 (41%), Gaps = 50/650 (7%) Query: 9 GRGISP--LIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKK---AMLTLGQAALED 63 G+ SP +I SW+RC + + P A+ VT + + L + +A +E Sbjct: 24 GKHYSPHEVIGRSWQRCLSEYGLDP-SQPRPARIVTHQILREHQDSVDEFLNVARAGVEQ 82 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 + +A L + D + G ++L G G +E GTCA+ Sbjct: 83 LYTQIAGLGYVLLLSDYRGITVQFLGSKNDDERLHRAGLYLGADWSEQYAGTCAVGTCIQ 142 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD----LPLTL 179 QA+ HF A P+ D G+L + ++ T L LT Sbjct: 143 EQQALTCHRVDHFDSSHIGLTCTAAPIKDPSGQLLAVLDISALDSSRTPDSQNFALHLTQ 202 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AR + + +Q L++ + + +E G + N +L Sbjct: 203 LYARLIEDAYFLRRYRHSLIFKCDQSRELVQVNGQCLFALNEDGEVLAANTAGRSLL--- 259 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + ++ LP V + + V +ES+ I + TQ T F Sbjct: 260 -------SQCHIIDLPTVYLPTLLECQWRDIVSINYESKDG-----IRAFRLSGTQQTLF 307 Query: 300 ILLLHPVE------QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 +L+ P Q+ Q++ +Q V + DDP R+ I ++ +L+ Sbjct: 308 GMLIEPATSVPYQPQLSQILATQEESVPQ-LDGLSADDPAMRKTISLAKRLRHRDMNLLI 366 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRL 409 G+ G GK +L+QAIH+ S RA PYIAVNC ++ + E G T G Sbjct: 367 LGDTGTGKEVLAQAIHDTSHRALKPYIAVNCAAIPESLIESELFGYAPGTFTGGRAKGAK 426 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 ++ A GGTLFL++I + + LQ+ LL+V+ +G + L + + I +DV+V+A T +LA Sbjct: 427 GLIQQASGGTLFLDEIGDMPLHLQTRLLRVLAEGQVMPLGSLQAIDVDVRVLAATHCNLA 486 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 L+++ RF L+Y ++ + +P L+ R P L+ L+ + +++ DA++ Sbjct: 487 QLIKEGRFREDLFYRINGATLNLPTLKAR-ADKPYLIQMLLKKIN----PAVRLRADAMS 541 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST----- 584 L++ WPGN +L + + + I + LPE F Q L Sbjct: 542 ALLAYEWPGNIRQLVNTLTFADAICETDEISIQHLPEEFFVHQNGLVEPLIPLHPITPTY 601 Query: 585 ----SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 LS + E++ ++N + + ++ LG+ R T++R+M +H I Sbjct: 602 EGCQKLSNDDSEQQFLLNLLRQQRWNVSAVAKQLGVSRPTVYRRMTKHQI 651 >UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=17 Tax=Bacteria RepID=A0B2I0_BURCH Length = 680 Score = 573 bits (1479), Expect = e-162, Method: Composition-based stats. Identities = 142/651 (21%), Positives = 247/651 (37%), Gaps = 39/651 (5%) Query: 11 GISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 +P I + ER + + + + + + +E E + Sbjct: 19 WPAPSIQKAHERSETFGLQVSARPDYDVLSNAALVLKREQSRVLCVHAMPVMETLHEQIV 78 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D IL GD L++ + G AE GT A+ A + Sbjct: 79 NTQSMIVLTDAEGLILHSIGDDDFLRRAEKVALRPGANWAENRQGTNAIGTALAELCPMV 138 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 DQHF + P+ D G G + + + L + + N L Sbjct: 139 VHGDQHFLAANRFLTCSSVPILDPYGDAIGVLDVTGDHRSYHQHTMALAKMSVQMIENHL 198 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 T + + L ++ +G++++ G N A L + A + ++ Sbjct: 199 FTTTFQETLQVSFHGRPEFLGTLMEGIVAFTADGRFLSANRSAQFQLGMPLAALRAHTLS 258 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L + + +A +H+ + A + + +G+ +H Sbjct: 259 SLFDVTSAQLIDRMRASTDRHLMLNL-GNGAVVCARVHFRRATLAEGSRP-TDVHDAGAP 316 Query: 310 RQLMTSQLGKVSHT------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + + T ++ D Q +I R+ P+L+ GE G GK L Sbjct: 317 AARANAVPAPAAGTSAGLSRLNYLDTGDAQVASVIAKVRKVIGKDIPILITGETGTGKEL 376 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGT 419 L+QAIHN+S R P++AVNC + + E G + T G + +L A+GGT Sbjct: 377 LAQAIHNDSPRRDAPFVAVNCASIPETLIESELFGYEEGAFTGARRKGAIGKLLQANGGT 436 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + LQ LL+V+++ ++ L + + I +D+ +I T DL ++ QNRF Sbjct: 437 LFLDEIGDMPYPLQVRLLRVLQERLVNPLGSTKTIAVDIAIICATHRDLREMIAQNRFRE 496 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRS--LEKRFSTRLKIDDDALARLVSCAWP 537 LYY L+ + +PPLR R + +V L+ L + D + V C WP Sbjct: 497 DLYYRLNGLVVRLPPLRDRT-DLAVVVQKMLQREAFAGPGRPPLSVAPDVMELFVRCTWP 555 Query: 538 GNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDD-------------------- 576 GN +L +++ A D+G IR LP+ F + D Sbjct: 556 GNFRQLGNLLRTAAAMVDDDGEIRREHLPDDFFDDLRRGDAHVGHAGQAAPDSPAAASAG 615 Query: 577 --VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 V+ +V AI A GG + + LG+ R T++RKM Sbjct: 616 PCVADALPPADARLQDVAASAIAAALARHGGNVSAAARALGVSRNTIYRKM 666 >UniRef50_Q0JZT0 Transcriptional regulator, PspF-family n=2 Tax=Burkholderiaceae RepID=Q0JZT0_RALEH Length = 650 Score = 572 bits (1476), Expect = e-161, Method: Composition-based stats. Identities = 141/644 (21%), Positives = 250/644 (38%), Gaps = 35/644 (5%) Query: 11 GISPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + LIA + R A + + + +E +A Sbjct: 26 DRAGLIARAHARSAGFGLDVRHAPGFDAVSPRALGELVDASRDLYRHALPVMETLHAQIA 85 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D + IL GD + + + + G +E GT A+ A + Sbjct: 86 NTDSMVLLTDSSGVILHSLGDGEFVARARRVALAPGVSWSEPSKGTNAIGTALAEARPTL 145 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 A +HF + P+ G + G + ++ + L A+ + N L Sbjct: 146 IHASEHFLESNHQLTCSCAPIASPTGAILGALDVSGDHRGFHRHTMALVRMSAQMIENHL 205 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + + + ++ +GV ++ G N L L A Sbjct: 206 FANHFPDALLVRFHARPEFVGTLFEGVAAFSPDGAFLAANRSGLFQLGLAPHALADAGFA 265 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L P V A +++ ++ TL Q + I L + Sbjct: 266 GLFGQP---------------VRAAMQARGGAAGSLQTLTLPSRVQVFARIEYLAAPIAV 310 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 RQ + A + D ++ R+ + +L+ G G GK L++AIH Sbjct: 311 RQPGAE--DPLPPALAALDTGDAAVAAVLRRVRKVSGRDITILVQGRTGTGKEWLARAIH 368 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 S RA GP++AVNC ++ + E G + T G ++ AHGGTLFL++I Sbjct: 369 AASPRAGGPFVAVNCAAIPESLIEAELFGYEEGAFTGARRRGSEGKVVQAHGGTLFLDEI 428 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + Q L++V+++ +T L + R +P+DV+V+ T DL ++ F LYY + Sbjct: 429 GDMPLAQQVRLMRVLQERAVTPLGSARALPVDVRVVCATHRDLRAMIADGAFREDLYYRI 488 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGNDFEL 543 +A +T+PPL R +P LV+ L+ + + + +D LA L WPGN +L Sbjct: 489 NALAVTLPPLCER-SDLPLLVDRILQRQCEEAGLPSPVHVDAQVLALLRRHPWPGNIRQL 547 Query: 544 YSVIENLALSSDNG-RIRVSDLPEHLFTE--------QATDDVSATRLSTSLSFAEVEKE 594 +V+ A+ ++ +I V LPE E A V A S S + E Sbjct: 548 ANVLRTAAILAEGEAQIGVEHLPEGFEQECGDEAERCDAAAAVQAPAPSKSARMRDWEAG 607 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 I A GG + + LG+ R T++R++++ G++ + R Sbjct: 608 LIRQALARHGGNVSHAARELGVSRNTIYRRLRE-GLEGDEEAER 650 >UniRef50_A1AMU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Pelobacter propionicus DSM 2379 RepID=A1AMU4_PELPD Length = 666 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 133/644 (20%), Positives = 256/644 (39%), Gaps = 40/644 (6%) Query: 13 SPLIATSWERC--NKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 +P+I +SW+RC + + + + P G + L + ++ ++ +E +A Sbjct: 31 APVIHSSWKRCFNDYSIDPSSKSKPRIITGSALKECQEPLEEFLFIAKSGMKSLYEKIAT 90 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D + G+P T ++ G G+ AE + GTC + + + Sbjct: 91 AGYVILLGDANGVTIDYMGNPDTEKEHRDAGLYLGSLWAESVEGTCGVGTCIEEKRPITI 150 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI----AREVG 186 D+HF+ + TPLF G L G + ++ + L L + AR + Sbjct: 151 HRDEHFRARHIGLSCSTTPLFFPDGTLLGVLDISQLHPPQSRDSQLLALQMLSYSARLIE 210 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQG 245 N + + A +E + + ++ +G + N A L + G Sbjct: 211 NAYFMRLYKDCWIVRFSCMKAFVEVVAESFLAVSNEGYVIAANQSALTQLQGPQLPSPIG 270 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R ++ + L +++ ++ A T + + P Sbjct: 271 RHVSAVFDL--RMEELVEHATHKTTTILPIRFLDTGYQYFATFRAPEKKS---------P 319 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + ++ S+ T ++ DP+ ++ ++ + +LL GE G GK + + Sbjct: 320 LSPPKKETRSKPSP-HFTLDYLAGTDPRMAYNVNCAKRLMNRNISILLIGETGTGKEVFA 378 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLF 421 +AIH S+RA+ P++A+NC ++ + E G T G ++ + GGTLF Sbjct: 379 RAIHEASDRASKPFVALNCASIPESLIESELFGYKQGAFTGANSKGMRGKILQSSGGTLF 438 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + LQ+ LL+V+ + + L + +I +D+ +I T +L LV + +F L Sbjct: 439 LDEIGDMPFNLQTRLLRVLAEREVQPLGSESVIKVDLNIICATLRNLEELVREKQFREDL 498 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY L+ I +PPLR R ++ N L E + +AL L + WPGN Sbjct: 499 YYRLNGITIKLPPLRERT-DRALVIENALA-AEAEPGVETGLAPEALEILAAYDWPGNIR 556 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF------------- 588 +L + + S+ I DLP L + + Sbjct: 557 QLRNALRFSIAISEGETIHARDLPPDLLKAPTSGIALPAPAPSPEPLPAQDPASLLPDLP 616 Query: 589 --AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+E ++ + I + S L + R+TL+RKM ++ + Sbjct: 617 PQDAQEREKLLRTLKKNKWNITDASRELCVSRSTLYRKMSKYHL 660 >UniRef50_C4KAI6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Betaproteobacteria RepID=C4KAI6_THASP Length = 699 Score = 569 bits (1467), Expect = e-160, Method: Composition-based stats. Identities = 143/671 (21%), Positives = 261/671 (38%), Gaps = 49/671 (7%) Query: 3 GAFNNDGR----GISPLIATSWERCN-KLMKRETWNVPHQAQGVTFASIYRRKKAMLTLG 57 G F +GR G+SPLI SW RC + M + A + A + +L Sbjct: 23 GQFFGEGRAPEAGVSPLIVDSWLRCRERGMAADDRAEAEHAGRLQLAEAREGNRGLLDYA 82 Query: 58 QAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCA 117 +E +E + + + D IL GD + + + S + G +E GT A Sbjct: 83 SGVMEHVFEQIRASGSLVILSDPQGMILHSLGDAEFVDRASRVALQPGACWSEAARGTNA 142 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPL 177 + A ++ + +H+ + A P+ D +G L G + ++C L L Sbjct: 143 IGTAIVTEAPTVVLGGEHYLDRNGFLSCTAAPIRDPRGALAGVLDVSCEQRMHQRHSLGL 202 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 + + L ++ + S+ +G+++ +G+L N+ A + Sbjct: 203 VRLSVQLIEKRLFEAEFANHILVAFHERPEYVGSLQEGLVAVTPEGHLAGANSIAREWIG 262 Query: 238 LDATASQGRAITELL-------------TLPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 G + EL + A+++ ++ + + + + Sbjct: 263 RRVECGGGASFAELFRQGLGKVVDRAMNSSDALIRLGLRDGSEIHVQLRSLRPRFTAFGS 322 Query: 285 VITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 + + S + + T + D R + R+ Sbjct: 323 AQAGEGMRTFAAESSPAAVGSAPPVSAPAPVSAPHGPITLHDLATGDAGIGRAVDRARRI 382 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI---GGDR 401 P+L+ GE GVGK L +QA HN RA ++A+NC + + E GG Sbjct: 383 LGKDIPLLIQGESGVGKELFAQAFHNSGPRADKTFVALNCAAVPETLIESELFGYVGGAF 442 Query: 402 TDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T + G L +++ A+GGTLFL++I + + +Q+ LL+V+++ +T + + + IP+D+ + Sbjct: 443 TGARKEGALGKIQQANGGTLFLDEIGDMPLGMQARLLRVLQERCVTPVGSVKSIPVDISL 502 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 + T L V + F LYY +++ +T+P LR R I +V L + + + Sbjct: 503 VCATHRVLRDAVARGEFREDLYYRVNSLTVTLPALRER-SDIRCIVERILAAECREAGLQ 561 Query: 521 -LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG--RIRVSDLPEHLFTEQATDDV 577 + I D+ + + WPGN +L +VI D G IR LPE LF D Sbjct: 562 GVWIGDEVMRFVERHGWPGNVRQLQNVIRVAVALLDEGEREIRPEHLPEDLFLADPVDGG 621 Query: 578 SATR-----------------------LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 +S + ++E E I + GG + + L Sbjct: 622 KTPPAAHAGPLVAAASAALPLAADAPPISAAKRLDQLEIELIERVMREVGGNLSAAARTL 681 Query: 615 GIGRTTLWRKM 625 G+ R L+RK+ Sbjct: 682 GVSRNRLYRKL 692 >UniRef50_Q47ZM3 Acetoin catabolism regulatory protein n=2 Tax=Alteromonadales RepID=Q47ZM3_COLP3 Length = 658 Score = 568 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 153/641 (23%), Positives = 273/641 (42%), Gaps = 46/641 (7%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRK---KAMLTLGQAALEDAWEYMA 69 L+ +SW+RC + K + H ++ +T + + + + + +E+ + + Sbjct: 26 KNLVTSSWKRCIQTFKLDPLG-RHGSRVLTQSELQNHTSPMEEFIITAREGMENLYSQVE 84 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D+ A + G+ + + L G G E GTCA+ + Sbjct: 85 ALDYVVLLCDKNAVTVDFIGNNRLTKDLRNAGLYLGADWNERHAGTCAVGTIINELVPLT 144 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA---LACPVEQTTAA-DLPLTLAIAREV 185 HF V A+P+ D G+L + L+ P E+T+ L L A + Sbjct: 145 IHQQDHFDIVNTTLTCSASPILDHNGQLLAVLDVSALSSPKEKTSQHLLLKLVQMHAGLI 204 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV----LRLDAT 241 + T + + L + +I+ D + N A + L ++ Sbjct: 205 EAANFLNYYSNSTILKFDINISALNTYCPNLIALDSNNVVIAANQNARTIIARELGINDI 264 Query: 242 ASQ---GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 SQ G IT L L A L + Q +S++ I +P + Sbjct: 265 RSQLLTGFDITSLFQLGAGLNNSSAQ--------IIIKSKNTGIAFYCNFQP---PRIKI 313 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 +L+ ++Q T + + DP +++ + + + +L+ GE G Sbjct: 314 RNTVLNQTSSIKQDNTKPIAA---EIDKIAGSDPVMQKVKLLLNKFSPTDINMLIQGETG 370 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLEL 414 GK +L+ AIH S R GP+IAVNC D+ + E G G T G+ + Sbjct: 371 TGKEVLANAIHLCSNRRKGPFIAVNCAALPDSLIESELFGYKAGSFTGASSKGKTGLILA 430 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV-- 472 A GTLFL++I + LQ+ LL+V+ + V+T + + + I +D ++I+ T D++ + Sbjct: 431 ADKGTLFLDEIGDMPATLQTRLLRVLAEKVVTPVGSDQAIAVDFRLISATHQDISPQIDS 490 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 EQ+ F LY+ L+ I +P LR R+ + LV+ + S K + + +A+ L Sbjct: 491 EQSTFRADLYHRLNGATINLPALRDRQ-DLHYLVSCLVSSESK-----IGLSKEAMQILA 544 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV- 591 +WPGN EL +VI + D+ I LPE++F T + T + AE+ Sbjct: 545 EYSWPGNIRELKNVISYASTLCDDNTITPEHLPEYVF--DCTPFIFNENEGTHIQHAEIL 602 Query: 592 -EK-EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+ + I++ + E + L IGR TL+RKMK++ I Sbjct: 603 PEQGQKILDTLRHNNWNATETAKQLAIGRATLYRKMKKYSI 643 >UniRef50_A1TS58 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Acidovorax RepID=A1TS58_ACIAC Length = 699 Score = 568 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 147/669 (21%), Positives = 263/669 (39%), Gaps = 59/669 (8%) Query: 15 LIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 +IA S ER + Q A R A+ +E +A + Sbjct: 24 VIAESHERSRSFGLHRHASADLQPLAPDALAWAVARNDALCAHALPVMETLSAQIAGTQS 83 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D +L GD + L + + G +E GT A+ A G AV+ D Sbjct: 84 MVLLTDAQGVVLHALGDEEFLGRAQRVALRPGGTWSERSKGTNAIGTALALGDAVQVNGD 143 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF P+ D G++ G + ++ Q +A L L AR V N L Sbjct: 144 EHFLAANQFLTCSCAPICDPLGQVIGALDVSGDRHQQSAHTLALVRMSARMVENHLFGKV 203 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + L ++ +G+ ++ +G N L + A A Q + L Sbjct: 204 YEDAVRLRFHARPEFLGTLVEGLAAFTPEGRFLAANRSGQFQLGMSANALQAQTFPSLFG 263 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP----------------IIETQGT 297 +P A + + ++ ++A++ +P Sbjct: 264 MPMSALLAHARGAMPRPLQLALPG-GVVVNAMVEFRPKGAAALGWTGQGSDEDTPVPGPV 322 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + G ++ D Q ++I + S P+L+ GE Sbjct: 323 APASATARAARRPIAPVPAGGPRLSGLRYLDTGDAQLAQVIDRVSRVLGSDVPMLILGET 382 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLE 413 G GK LL++AIH + RA GP++AVNC + + E G + T G + ++ Sbjct: 383 GTGKELLARAIHQDGPRARGPFVAVNCASIPETLIEAELFGYEEGAFTGARRRGSVGKIA 442 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 AHGGTLFL++I + + +Q+ LL+V+++ + L + R IP+DV V+ T +L ++ Sbjct: 443 QAHGGTLFLDEIGDMPLAMQARLLRVLQERTVAPLGSARQIPVDVHVLCATHRNLRDMMV 502 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-------------- 519 + F LYY L+ + +P LR R + +V L++ ++ + Sbjct: 503 RGLFRDDLYYRLNGLVVRLPALRER-SDLRVIVQRLLQAQDREQAAEGSTPGWQRPRRTV 561 Query: 520 RLKIDDDALARLVSCAWPGNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDDVS 578 L++ A+ + WPGN +L + + AL + D I + LPE LF E Sbjct: 562 PLQVASRAMDLFLRHRWPGNLRQLSNALRTAALMAGDADEIDIGHLPEDLFDEGLPTAGD 621 Query: 579 ATRLSTS---------------------LSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 A +++ S+ E ++A+ +A V GG + ++ LG+ Sbjct: 622 AVPGASARDAEPSPSVRSAAHRPAPAAVRSWDETVEDALRHALSVHGGNVSAVARALGVS 681 Query: 618 RTTLWRKMK 626 R T++R++K Sbjct: 682 RNTVYRRLK 690 >UniRef50_C0Z5M5 Acetoin catabolism regulatory protein n=2 Tax=Bacillales RepID=C0Z5M5_BREBN Length = 636 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 139/639 (21%), Positives = 260/639 (40%), Gaps = 50/639 (7%) Query: 8 DGRGISPLIATSWERCNK-LMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I I SW R + H G + ++ ++ + LE Sbjct: 21 DSSRIHQSIIESWYRSRNAQVSPYLDRGRHILSGESLRHQQQKNAMLMDVAAPFLEKMDR 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + ++D +L G + + F +G E +GT A+ A GQ Sbjct: 81 LASEMGMIALLIDPEGYVLWMKGSKSVREVAEKIRFVEGVRWTEAEMGTNAIGTALSLGQ 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 + +H+ W+ A P+ + G + G + ++CPV++ L + A + Sbjct: 141 PIMVTGSEHYSIASHGWSCAAAPIRNDDGEVLGILDVSCPVDRAHPYMLGIVTQAAYTLE 200 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + S E + +LE + +I + + + A+R++R + G Sbjct: 201 KEVKLRSHHDEMELIQGSME-VLEK-EQPLIICNPRQKVV----AASRLIRQNIPNWCGM 254 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 E+ ++ + + G LL Sbjct: 255 RTEEIYM------------RGYRNRMEVPICSAEHGGFI----------GKCIYLLNAGE 292 Query: 307 EQMRQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 +Q+RQ + F R+ + + A + V + GE G GK +++ Sbjct: 293 QQVRQAVYQDKDSAKPFRFRGEAGTSRAFRKTLEELGRVASADINVFILGETGTGKEVIA 352 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLF 421 ++IH S+ A+GPY+AVNC L E G G + + G + +LAH GT+F Sbjct: 353 RSIHENSKWASGPYVAVNCGAIPTELLESELFGYVEGAFSGAKRTGAKGKFQLAHQGTIF 412 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +Q ALL+V+++ IT L + IP+D +VIA T ++ LV++ +F L Sbjct: 413 LDEIGEIPHSMQVALLRVLQERKITPLGGSQEIPVDFRVIAATHRNIHQLVKEGKFREDL 472 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 +Y L+ + + +P LR R IP LV++ ++ + A L+ WPGN Sbjct: 473 FYRLYVYPVHVPALRQRAEDIPHLVHH----YCEKHDWDAVFPPEFFAALMDYTWPGNIR 528 Query: 542 ELYSVIENLALSSDNG-----------RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 EL +V++ L + S N + ++L + + T + + SLSF + Sbjct: 529 ELMNVLDKLRILSMNRCDDLLHQLHSLLHQSAELSKSVSTSLSFPEQRTEEHRASLSFRD 588 Query: 591 -VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + ++ ++ A Q T G + + + LLGI R+T ++++ + Sbjct: 589 KIMQQQMVEALQKTNGNVSKAAKLLGIPRSTFYKRIHRF 627 >UniRef50_P28614 Acetoin catabolism regulatory protein n=4 Tax=Proteobacteria RepID=ACOR_RALEH Length = 668 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 144/644 (22%), Positives = 254/644 (39%), Gaps = 40/644 (6%) Query: 15 LIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 +I SW RC + + R + + L+ + +A Sbjct: 34 IIQNSWRRCVHQYGLDPSRMQEARILPQPRLREHQERIDDFARIARHGLQSLYGQVAGLG 93 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D + G+ ++ L G G +E GTCA+ A +GQA+ Sbjct: 94 YVVLLTDAQGVTVDYIGEARSDAALRHAGLYLGAEWSESGAGTCAVGTALATGQALTVHQ 153 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR----EVGNL 188 HF A PLFD+ G L + ++ L L + R + N Sbjct: 154 ADHFDATHIPLTCTAAPLFDTHGNLHAILDISALTSPQAKDSQGLALQMVRIYAAHIENA 213 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-----RLDATAS 243 + + LN ++ + +++ DE G + N +A +L Sbjct: 214 NFLRAHRRDWILKLNVAPEFVDVNPEYLLALDEAGRIVGHNHRARLMLEGELGGAPGATV 273 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G+ L + L H + S+ + + + + G ++ +L Sbjct: 274 LGQRFETLFD---------ARLEDLGHYVYSRPSEQRLVA-------LTRSGGLLYLSVL 317 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P + + + A + D + + + S +L+ GE G GK Sbjct: 318 PPALRWQAPPAETQVAMPDALAALTGGDAALQLQLQRAARLVDSPINLLIHGETGSGKEF 377 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGT 419 L++A+H S R GP++AVNC + + E G + G+ ++ A GGT Sbjct: 378 LAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADGGT 437 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + ELQS LL+V+ +G + + A R +P+ ++VI+ T L LV RF Sbjct: 438 LFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRFRE 497 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYY L+ T+PPLR R + LV L+ + + + A RL WPGN Sbjct: 498 DLYYRLNGARFTLPPLRART-DLDWLVRKLLQEGSAE-GSEITLSPAARERLHRHRWPGN 555 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV-------E 592 EL +V+E +G I V DLP+ L + + + S + A E Sbjct: 556 LRELRNVLEYARAVCADGYIDVPDLPDSLAGPAPSAALPQPGPAQSPAAAPFDPHQLPPE 615 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 ++ + +G + ++ +G+ R TL+R+M+++GI + + Sbjct: 616 GMLLMQYLRASGWNLSAVARQIGVSRMTLYRRMERYGIQSPNRR 659 >UniRef50_Q3A7P8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A7P8_PELCD Length = 684 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 153/670 (22%), Positives = 267/670 (39%), Gaps = 48/670 (7%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKA---MLTLG 57 +SG N+G+ I I TSWER + + P+ Q +T A + + L + Sbjct: 17 VSGNRGNEGQQIEAPIVTSWERSLQHY-GIDPSEPNPVQVLTAAELREYTRPIERFLRIA 75 Query: 58 QAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCA 117 +A ++ +A + + D + GD + +Q G G E GTC Sbjct: 76 KAGVQFLHRQVADLGYSTLLCDAHGVTVDWRGDERFSRQWKDAGLYLGAVWNEHQEGTCG 135 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD--- 174 + A I A+ HF+ N P+ G+ G I ++ + Sbjct: 136 VGTALIEQTALTVHKGDHFRAKNANLTCSCAPIIGPSGKTMGLIDVSALHSPDSKESQHL 195 Query: 175 -LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAA 233 L L + AR + + + + LN L E + +++ D +G + + A Sbjct: 196 ALQLVMQSARMIESAYFLNQYEDQWVLKLNFERELAEVSSECLVAIDGEGRILAADRIAC 255 Query: 234 RVLR--LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 R L + GR + E+ L + + T + Q + + + I Sbjct: 256 RTLGHEVPGGNLVGRFVREVFDLNFEKLLDVYSNSSMVLPIRTQATGLQLFACLRSPQAI 315 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + + PV R+ + L T ++ DD + + + ++ P+ Sbjct: 316 ----SVKPVGRVEPVAPPRRQVP--LAGQPLTLDYLAGDDRKLQDSVERIKRVMNKPIPI 369 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NG 407 LL GE G GK + +QAIH+ S RA P++AVNC ++ + E G T G Sbjct: 370 LLNGETGTGKEMFAQAIHHASRRADKPFVAVNCAAIPESLIESELFGYKDGAFTGARSKG 429 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 ++ + GGTLFL++I + LQ LL+V+ + +T L IP+D+ VI T + Sbjct: 430 MRGKILQSDGGTLFLDEIGDMPASLQPRLLRVLAEREVTPLGGETAIPVDLHVICATHRN 489 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 + +V F LYY L+ +P LR R + L+N+ L + IDD A Sbjct: 490 ILDMVASGAFREDLYYRLNGIAFELPSLRER-SDLERLINDVLLIEAGNSVESVVIDDAA 548 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL- 586 + + WPGN +L + + DNG I +DLP + +TD +A+ ++ Sbjct: 549 MRVMTDFCWPGNIRQLRNALRYALAVCDNGVITCADLPVDITVTGSTDPAAASLTASRRQ 608 Query: 587 --------------------------SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 + + E++ I+ A Q ++ + +GI R T Sbjct: 609 PVAQLPEEPVRPPAASVVDEAVAGLNAMEQAERQVILEALQKYKWQVSKAVKEVGISRAT 668 Query: 621 LWRKMKQHGI 630 ++RKM ++ I Sbjct: 669 MYRKMDKYAI 678 >UniRef50_A7MAQ9 BmoR n=1 Tax=Thauera butanivorans RepID=A7MAQ9_9RHOO Length = 669 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 133/642 (20%), Positives = 242/642 (37%), Gaps = 38/642 (5%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWE 66 ++ ++ SW RC K+A++ + ++ E Sbjct: 27 QPGKVADVVLRSWTRCRAEGVVPNARQEFDPIPRTALDETVEAKRALILAAEPVVDALME 86 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 M + + DE +L G+ L+ G E GT A+ A + Sbjct: 87 QMNDAPRMIILNDERGVVLLNQGNDTLLEDARRRAVRVGVCWDEHARGTNAMGTALAERR 146 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V +H+ + + A P++D G TG + ++ +P + + Sbjct: 147 PVAIHGAEHYLESNTIFTCTAAPIYDPFGEFTGILDISGYAGDMGPVPIPFVQMAVQFIE 206 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L + H + + +M +G+ +G + +N ++ L+ A Sbjct: 207 NQLFRQTFADCILLHFHVRPDFVGTMREGIAVLSREGTIVSMNRAGLKIAGLNLEAVADH 266 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 + L + A + Q ++ + Q + + V Sbjct: 267 RFDSVFDL---------------NFGAFLDHVRQSAFGLVRVSLYGGVQVYARVEPGLRV 311 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + D R I R+A + +L+ GE G GK + ++ Sbjct: 312 PPRPAAHARPPRPAPRPLDSLDTGDAAVRLAIDRARRAIGRNLSILIQGETGAGKEVFAK 371 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT----DNENGRLSRLELAHGGTLFL 422 +H ES R+ GP++AVNC + + E G + G + ++ AHGGTLFL Sbjct: 372 HLHAESPRSKGPFVAVNCAAIPEGLIESELFGYEEGAFTGGRRKGNIGKVAQAHGGTLFL 431 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I +A LQ+ LL+V++ + L R +P+D+ ++ T +L L+ Q +F LY Sbjct: 432 DEIGDMAPGLQTRLLRVLQDRAVMPLGGREPMPVDIALVCATHRNLRSLIAQGQFREDLY 491 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y L+ I++PPLR R + ALVN+ L + + + AWPGN + Sbjct: 492 YRLNGLAISLPPLRQR-SDLAALVNHILFQCCG-GEPHYSVSPEVMTLFKRHAWPGNLRQ 549 Query: 543 LYSVIENLALSSDNG-RIRVSDLPEHLFTE---------------QATDDVSATRLSTSL 586 L++V++ D+G I LPE E A+ + Sbjct: 550 LHNVLDAALAMLDDGHVIEPHHLPEDFVMEVDSGLRPIEEDGSTAAHRARQPASGSGPAK 609 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++ +AI A + G I + LG+ RTT++RK++Q Sbjct: 610 KLQDLALDAIEQAIEQNEGNISVAARQLGVSRTTIYRKLRQL 651 >UniRef50_Q2RVW2 Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains n=7 Tax=Proteobacteria RepID=Q2RVW2_RHORT Length = 653 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 145/624 (23%), Positives = 241/624 (38%), Gaps = 28/624 (4%) Query: 12 ISPLIATSWERCNKLMKRE--TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 I+P +A SWER + V A R++ +L + ++ Sbjct: 30 IAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELLMRARPVMDYLHAQTK 89 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D+ ++ GD +++ + G E GT A+ A + Q V Sbjct: 90 GSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAIGTALVEAQPVA 149 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +HF + A P+ GR+ G + ++ P L A + N L Sbjct: 150 VHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLVRAATHMIENKL 209 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 E + + ++ +G+++ E+G + N A L + + G+A+ Sbjct: 210 FEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLVIGANRAALAFLAITPSD-IGKALI 268 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 E L LP + + H + ++P + ++ P Sbjct: 269 EAL-LPLRMADILDHGHRHPGTTLGLACPGGG-RFSLRVEP-------GWRAVVRPA--- 316 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 +V A + DP I R+ P+LL GE GVGK + + A+H Sbjct: 317 ---AMPAPDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESGVGKEVFATALH 373 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKI 425 R P++AVNC + + E G G T G R+ A GGTLFL++I Sbjct: 374 ATGPRRGRPFVAVNCAALPEHLIEAELFGYAPGAFTGARREGSAGRIREAEGGTLFLDEI 433 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ LL+V++ + L + + +D +IA + L E RF LYY L Sbjct: 434 GDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEAEAGRFRADLYYRL 493 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + + +PPLR RR ALV + ++E + +D D L WPGN +L + Sbjct: 494 NGLTLCLPPLRARR-DFAALVARMIETMEP--GAGIGLDPDVADALAGHGWPGNLRQLAN 550 Query: 546 VIENLALSSDNGRIRV--SDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 V+ D G IR+ LPE L E + V + + I Sbjct: 551 VLRFACALRDPGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAASDSLIERMVAA 610 Query: 603 TGGRIQEMSALLGIGRTTLWRKMK 626 +GG + E + LGI R TL+R+M Sbjct: 611 SGGNLSEAARRLGISRNTLYRRMN 634 >UniRef50_Q3JGJ2 Sigma-54 activated regulatory protein n=63 Tax=Burkholderiales RepID=Q3JGJ2_BURP1 Length = 724 Score = 562 bits (1450), Expect = e-158, Method: Composition-based stats. Identities = 137/631 (21%), Positives = 250/631 (39%), Gaps = 23/631 (3%) Query: 15 LIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 L+A + R + R + + +++ T + ++ +A + Sbjct: 94 LLAQAHARSLSVGLRASELPDFSPLSRAALRELIDGSQSLYTHARPVMDTLHTQIADTQS 153 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D IL GD +++ + + G AE GT A+ A I+GQA+ Sbjct: 154 LVLLTDRDGVILHSIGDADFVEKANRVALCPGVSWAEDARGTNAIGTALIAGQALAVHGA 213 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF + P+ D GRL G + ++ + L L A+ + N L + Sbjct: 214 EHFLRANHVLTCSCAPIVDPFGRLLGALDVSGDPRGFSPHTLALVKMSAQLIENHLFANQ 273 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + + ++S+ G++++ G L N A L + A Q R EL Sbjct: 274 CADALRVRFHAHDEFVDSLFAGLVAFSPSGALIAANRSAQFQLGANLDALQQRGCDELFG 333 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 L PL T + + V Q T+ + Sbjct: 334 LSFAKLAQHAAREPLACFTLTLGTGVR----VRARCEFAHAQRTAVAVSGRAAPPRATDA 389 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + TFA + D + ++ + PVL+ GE G GK L++A+H+ S Sbjct: 390 ARDEEPDAITFATLDTGDARMTAVLQRVGKVRGRDLPVLVLGETGTGKEWLARALHHASP 449 Query: 374 RAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLA 429 R GP++AVNC D+ + E G + T G ++ A GGTLFL++I + Sbjct: 450 RRDGPFVAVNCAALPDSLIEAELFGYEDGAFTGARKRGSPGKIAQADGGTLFLDEIGDMP 509 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + Q L++V+++ + L R +P+DV+++ T DL ++ F L+Y ++ Sbjct: 510 LAQQVRLMRVLQERAVMPLGGARAVPVDVRIVCATHRDLRAMIAAGTFREDLFYRINGLA 569 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 +T+PPL R + LV L L + + LA C WPGN ++ +V+ Sbjct: 570 VTLPPLAER-SDLETLVARVLARLARSEPMPATVSAAVLAAFARCRWPGNLRQMTNVLRT 628 Query: 550 LALSSDNG-RIRVSDLPEH--LFTEQATDDVSATR----------LSTSLSFAEVEKEAI 596 + ++ RI V LP+ L + D + R + + + + + I Sbjct: 629 AGMLAEGEARIDVEHLPDDFWLDCDARARDAAPPRTCADAAAGAAAAGASTLQDHQVALI 688 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 A G + + LG+ R T++R +++ Sbjct: 689 DGALDRHRGNVSAAARELGLARNTVYRHLRR 719 >UniRef50_A8I2P3 Transcriptional regulator n=6 Tax=Proteobacteria RepID=A8I2P3_AZOC5 Length = 659 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 150/649 (23%), Positives = 255/649 (39%), Gaps = 38/649 (5%) Query: 9 GRGISPLIATSWERCNKLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G +I SW RC + P L + +E + Sbjct: 20 GTRRDSIIEESWRRCVNQHNLDPVVLRDPCILPHQRLREHQEAMDEFLHTARFGVETLYR 79 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 +A L + D + GDP L G G E GTCA+ +G+ Sbjct: 80 EVAGLGYVLLLTDAKGVTVDFIGDPTFDNNLMRAGLYLGADWNEPHAGTCAVGTCIATGE 139 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC-----PVEQTTAADLPLTLAI 181 A+ HF A P++D++G L + ++ P E L L + Sbjct: 140 ALVVHQTDHFDATHIPLTCTAAPIYDARGSLAAVLDISALRSPEPKESQH-LALQLVKSF 198 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL----- 236 AR++ + L + E L + VI+ D G + N +A R+L Sbjct: 199 ARKIESAHLLNRFRREWILKLAPSPEFADVDPAYVIAVDGAGRIIGFNNEARRLLIRELE 258 Query: 237 ----RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 LD GR +++ L + A P+ F + P+ Sbjct: 259 RQPAGLDTRTIAGRQLSDFFELEVDDLPRLGHARPVTQRMVRFR---------ASGLPLF 309 Query: 293 ETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 L P + + + + DDP +++ + + +L Sbjct: 310 AQS------LAPPARVSAPAVPAAPPDLPKPLQAVFHDDPAMAQVVGRAAKLVNTQMSLL 363 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGR 408 +CGE G GK L++AIH S RAA P++ VNC + + E G + T G+ Sbjct: 364 ICGETGTGKEHLAKAIHAASGRAAKPFVPVNCAALPETLIEGELFGYEAGAFTGAAAKGK 423 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + A GGTLFL++I + + Q+ LL+V+ + +T L R IP++++VIA T DL Sbjct: 424 RGLVSEADGGTLFLDEIGDMPLSSQTRLLRVLAEREVTPLGRSRPIPVNIRVIAATHRDL 483 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 V+ RF LY+ L+ +T+PPLR R L + L + S R+++ DA Sbjct: 484 VTEVKGGRFREDLYFRLNGAILTLPPLRHRT-DFDWLADRILAERCRSLSRRIELSADAR 542 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L + +WPGN EL + ++ + I DLP+ + D++ + + Sbjct: 543 EALHAHSWPGNMRELLNALDYALAVACGPLIGREDLPDGIRAGWQGRDLAPAHIMQGVDV 602 Query: 589 AE-VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 A E+ ++ + I ++ LG+ RTT+ R+M++ I + + + Sbjct: 603 AASSERTRLLADLRRHDWNISAVARALGVDRTTIHRRMRRLQIASLRER 651 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 562 bits (1448), Expect = e-158, Method: Composition-based stats. Identities = 146/640 (22%), Positives = 259/640 (40%), Gaps = 33/640 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + P+IA SW+RC + + R ++L + +E + + Sbjct: 27 VRPIIARSWQRCLSYGLDPWSSDYPKCSDTLLKEKRREYNSLLVRIRPVMELLFAML--- 83 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 C + I D + + L + GTY E G AL++A V+ Sbjct: 84 HCNISICDGKGFVFDL------ITPLKSYPRTLGTYIEEATCGNGALTIALQEKVPVRID 137 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 + ++ + ++ P+ L G I P L + +A + + +LLL Sbjct: 138 GYEKYRVISHPYSSVCAPIV-VNKELIGAINATSPFGALPQEALEVIIAAGKLIESLLLE 196 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRAITE 250 + L++ +I DE+ + N A + L R I E Sbjct: 197 RDGQN-LAENFQPWRELIDCSSWALIFLDEENRIAAANKVACQELGCGQEEQWLNRPIEE 255 Query: 251 LL--TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 +L + P + F+ A+ +++ I + + V Sbjct: 256 VLIDKRDSAYLTRDDSGQPKPPQKIRFKLHDSQGGAIRSMELIRKNSLELALGRYRRVLL 315 Query: 309 MRQLMTSQLGKV-------SHTFAH------MPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + + + G V S+ + + +++ + + VLL G Sbjct: 316 LDPGLPAHGGPVNPEQPVSSYLLNNHSQEVEFLGKGEEWKKIKELVSRTSPFPSSVLLLG 375 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSR 411 E G GK +L++ IH S+R G ++AVNC L E G G T G + + Sbjct: 376 ETGTGKEVLARTIHRLSQR-QGNFVAVNCGAIPRELLQSELFGYVGGAFTGARSGGSVGK 434 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E AH GTLFL++I + +++Q +LL+ +++ +T++++ P+DV++IA T ++ L Sbjct: 435 FEHAHKGTLFLDEIGEMPMDMQVSLLRFLQERTVTKINSNYPKPVDVRIIAATNKNMYDL 494 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALAR 530 V Q F LYY L+ EI IPPLR R+ IP L + L K+F+ KID+ + Sbjct: 495 VGQGLFREDLYYRLNVIEINIPPLRERKEDIPMLAQFFVAELCKQFNILPKKIDEATMET 554 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L WPGN EL +V+E + + I LP+ +F + + Sbjct: 555 LDRHVWPGNVRELKNVMEKAVVMTAGDTITPDVLPKQIFQTLEPPSPQPADNPGTEAEEL 614 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EK+ I++ + GG + + + L I R TL+R++ +H I Sbjct: 615 SEKDYILHMLEQHGGNVAQTAKALNIARNTLYRRLLKHNI 654 >UniRef50_Q1H4H3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Methylophilaceae RepID=Q1H4H3_METFK Length = 640 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 148/626 (23%), Positives = 253/626 (40%), Gaps = 27/626 (4%) Query: 12 ISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 ++ IA SW+R + V + + +LT + + +E +A Sbjct: 34 VNKTIARSWQRSLDNGINAFQPLSTATLDRVELEKKRSKYRLLLTQAKPEISMLYEQIAH 93 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D IL G + + G E GT A+ A + Q V Sbjct: 94 SYSVVALTDAEGVILHSEGQHLLVDLAPREIMSPGYSWCEQERGTNAIGTAIVEQQPVAV 153 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +HF + L N++ A P+F +L GT+ + L L A+++ N + Sbjct: 154 QGAEHFVEQLQNFSCYAVPIFGPNRQLLGTLNVTNAFAAHQQHTLTLVKMTAQQIENRVF 213 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 H + + S +G +G L IN +L + ++I Sbjct: 214 RACYQGPLTLHFHTAADFIGSAWEGCAVLSREGALLAINRNGLELLGKSNPPTDFQSIF- 272 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 L L +L++ + A+ + T A + + P H + +R Sbjct: 273 LEPLSQLLEEYRQNANAPLTLTLT---NGGPAYATLDVAPDTTAN--------HGIAGIR 321 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 M +DP+ ++ R P+L+ GE GVGK LL+ IH Sbjct: 322 HAAKPPTAPAM----AMTSEDPRIAEILTQARLVMDQDIPILIQGETGVGKELLATTIHQ 377 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIE 426 S RA+GP IA+NC + + E G + T G ++E AHGGTLFL++I Sbjct: 378 NSARASGPLIAINCAALPEGLIEAELFGYEEGAFTGARQKGSQGKIEQAHGGTLFLDEIG 437 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + LQ+ LL+V+++ IT L + +D VI+ T L V + F + L+Y L+ Sbjct: 438 DMPLLLQARLLRVLQERSITPLGGSKSRKLDFAVISATNQKLQEKVAEGTFRKDLFYRLN 497 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 +T+PPLR R+ +PA++ N + ++I +D L WPGN +L++V Sbjct: 498 GISLTLPPLRERQ-DLPAIIYNIM---SAERGGHVEIHEDVLNLFRRHPWPGNIRQLHNV 553 Query: 547 IENLALSSDNGRIRVSDLPEHLFTE--QATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 ++ + S G ++ LP E + T T+ S + E + A Q Sbjct: 554 LKTMLALSGGGPLQRRHLPPGFMDELDNSMTLEQKTPGPTAGSIDAITNEVVKQALQHHE 613 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G I + LG+ R +R++K G+ Sbjct: 614 GNISAAARELGMSRNRFYRRLKALGL 639 >UniRef50_C9YDA0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDA0_9BURK Length = 664 Score = 558 bits (1439), Expect = e-157, Method: Composition-based stats. Identities = 142/644 (22%), Positives = 253/644 (39%), Gaps = 42/644 (6%) Query: 12 ISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + +A SW R T V P A + A+L + +E ++ + Sbjct: 28 VDARLARSWHRSVAAGLAPTARVAPEHASSHHLRHVLASNHALLAHSRPVMEYVFDQVRQ 87 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + D ++ GDP + + + G AE GT A+ A AV+ Sbjct: 88 SQSVVVLADSAGMLMHTLGDPYFVDKAERVALTSGASWAEAHRGTNAIGTALAERSAVEI 147 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +HF + A+P+ + G LTG + ++ A L L AR + N L+ Sbjct: 148 HGSEHFLERNGFLTCAASPILSATGELTGILDISGDHRNGHAHTLGLVSTAARMIENRLM 207 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + HL+ + S+ +G+I+ + G + N +LRL+A + Sbjct: 208 VATCKRNIRLHLHVQPEGIGSVAEGIIALSDDGWIVGANRVGLALLRLNAGDIGATTMER 267 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQF---IDAVITLKPIIETQGTSFILLLHPVE 307 +L + + + P + + + + +T+ P I + Sbjct: 268 VLDVRLDDLLSRHKRRPQQPQQLRLHNGAVLFAQVQVDVTVLPGISQSNAVRVANAFAGS 327 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 D + R R+ P+L+ GE GVGK + ++A Sbjct: 328 PAAGADALAALD---------TGDARWRSAADKARRVVGKPIPLLIQGESGVGKEMFARA 378 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLE 423 +H R GP++A+NC ++ + E G G T + G RL AHGG+LFL+ Sbjct: 379 LHASGPRRDGPFVAINCGAIPESLIESELFGYVAGAFTGARKEGSPGRLREAHGGSLFLD 438 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + +Q+ LL+V+++ +T + A + + +D +I+ T LA E+ F + LYY Sbjct: 439 EIGDMPLPMQTRLLRVLQERTVTPVGAGKSVAVDFALISATHCKLAEASEKGAFRQDLYY 498 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 ++ +T+P LR R + AL L L +++ D + RL S WPGN + Sbjct: 499 RINGLTVTLPSLRER-SDMAALTERLLADLSP--DVPVQVAPDLMQRLTSYPWPGNLRQY 555 Query: 544 YSVIENLALSSDNGR--IRVSDLPEHLF--------------------TEQATDDVSATR 581 SV+ +G + + +P+ L D Sbjct: 556 ASVLRTACAMLQDGEDTLDWTHMPDDLLDALQAPSLAERIVDTQSAQTPAPYAPDAQPAA 615 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + S + + AI A + T G + + LGI R TL+RK+ Sbjct: 616 VQAPQSLQALSQAAIQQALEATRGNVSLAARQLGISRQTLYRKL 659 >UniRef50_A9BXK1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=A9BXK1_DELAS Length = 653 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 142/625 (22%), Positives = 252/625 (40%), Gaps = 18/625 (2%) Query: 12 ISPLIATSWERCNKLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + +A SW+RC + R T + + R A+L + +E E + Sbjct: 28 VDERLARSWQRCIEQGLRPTGRLGAADNLEQHALGVLRSRHHALLAHSRPVMEYLSEQVR 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + ++ GDP L + + G E GT A+ A +++ Sbjct: 88 GSHSVVVLAGPCGTLVDTCGDPFFLGKAERVALASGASWHEAQRGTNAIGTALAEMDSIE 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +HF + A P+ G+L G + ++ + + L L AR + N L Sbjct: 148 IQGGEHFLERNGFLTCAAAPILSGTGQLLGILDISSEHGRGSPHTLGLVGTAARMIENRL 207 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + HL+ + ++ +G+ G L N A +LRL Sbjct: 208 MACDGQRHIRLHLHARPEGIGTVAEGIALISADGWLVGANRAALALLRLSRGQL------ 261 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 ++L VL +++ +H + + D ++ + T ++ V + Sbjct: 262 GSVSLEQVLDAGLEELLSRQHRQPDAAQPLRRHDGTALFGQLVPDRRTVRSSVVERVAEQ 321 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 +Q + A + D + R R+ +L+ GE GVGK ++A H Sbjct: 322 QQQEQAPQQPARDALARLDTGDARWRTAADKARRVLGKPIALLIQGESGVGKEWFARAAH 381 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIG---GDRT-DNENGRLSRLELAHGGTLFLEKI 425 + R GP++A+NC ++ + E G G T G+ L AHGGTLFL++I Sbjct: 382 DSGPRRDGPFVAINCAAMPESLIEAELFGYRQGAFTGGRREGQAGLLRQAHGGTLFLDEI 441 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ+ LL+V+++ + L + +D +++ + L +Q RF LYY + Sbjct: 442 GDMPLPLQTRLLRVLQERQVVPLGGGTPVAVDFALVSASNRRLREDADQGRFRADLYYRI 501 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + + +PPLR R G AL L +E + L++ LA+L WPGN + S Sbjct: 502 NGLAVELPPLRER-GDFEALAARMLADIEP--ARPLRMAPALLAQLAGHGWPGNLRQCAS 558 Query: 546 VIENLALSSD--NGRIRVSDLPEHLFTEQATDDVSATRLS-TSLSFAEVEKEAIINAAQV 602 V+ D ++ LP+ E S RL S E+ + A+ A + Sbjct: 559 VLRTACAMLDPHEDCLQWQHLPDDFQAELVQTARSGPRLDAAPQSLDELSRSAVRQALEN 618 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQ 627 G + + + +LGI R TL+RK+ Q Sbjct: 619 CRGNVTQAARMLGISRQTLYRKLAQ 643 >UniRef50_Q2BKZ6 Sigma-54 dependent transcriptional regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKZ6_9GAMM Length = 651 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 149/630 (23%), Positives = 261/630 (41%), Gaps = 25/630 (3%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + I SW R + + + + A + + + ++ ++ +Y A Sbjct: 30 VRSEIEDSWIRSLEAGVKCESPLDMESLSRGGVADLKDKNRHLIEAAHPEVKQLVDYFAA 89 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D A IL GD + L + G E + GT A+ A + V Sbjct: 90 DGGLVMLADCEATILGVKGDKRHLDSATRQALETGANWDEQLRGTNAVGTAVVERSPVMI 149 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTT-AADLPLTLAIAREVGNLL 189 +HF + + C+ P+ DSKG L G + L P + +L L R + N + Sbjct: 150 KGHEHFLDKVGYLSCCSAPITDSKGELIGVLDLTSPTDNRELPPNLSLVQQAVRSIENRM 209 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + + ++ L S G+++ + G++Q +N Q ++L G+ + Sbjct: 210 FSGQFQQQVVLSVHSRPEYLRSSWQGMLAMELDGHIQAVNEQICQLLGRKREQLVGKNLE 269 Query: 250 ELLTL-PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 EL + P VL + + ++ + P + + + Sbjct: 270 ELFGIRPEVLLTDLHRKQ-----RGQLRTRGGDFVCELLHFP-----NSFPASIAKTPAK 319 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + SQ+ + + + DP+ ++ + G +A PVL+ GE G GK ++++++ Sbjct: 320 PAKAKPSQIPLSAPELSELAGQDPRLKKGVRMGSRALAHELPVLIQGETGTGKEVMAKSL 379 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEK 424 H +S R+ GP++AVNC + + E G G T + G RLE AHGGTLFL++ Sbjct: 380 HLDSRRSDGPFVAVNCAAIPEGLIESELFGYREGAFTGSRKGGMTGRLEQAHGGTLFLDE 439 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + LQ+ LL+V+++ I L + +D+ VI + DL LV + F LYY Sbjct: 440 IGDMPLALQARLLRVLQERTIAPLGGGDEVALDIAVICASHRDLKSLVAEGAFREDLYYR 499 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ + IP R R +N L+ L R++ID L L+ WPGN +L Sbjct: 500 LNGVCLRIPAFRDRT-DKREFINGFLQQLTPD-GRRIEIDPVLLEDLLDYQWPGNIRQLE 557 Query: 545 SVIENLALSS--DNGRIRVSDLPEHLFTEQATDDVSA----TRLSTSLSFAEVEKEAIIN 598 + + D I +S + + E V+ + + E A+ Sbjct: 558 TTLRVAIAFMEPDEAIIDMSHISDDFLEELNQTSVAELPDCIQADAIGALKSSELVAVQK 617 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 A GG I + LGI R TL+RK+KQ Sbjct: 618 AVDQCGGNISAAANALGISRATLYRKLKQL 647 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 127/488 (26%), Positives = 217/488 (44%), Gaps = 17/488 (3%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + + + + +A+++ L + L N + L ++++ DG + + Sbjct: 105 LYIVNRTPILHDNKVVGAVGVAQDITELQQIANELNSVNEMKSTLETIIDTGHDGYLVVN 164 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVLQQAIKQAHPLKHVEAT--- 274 ++G + +N A ++ ++ + GR I E++ L V Q Q + V+ Sbjct: 165 KEGYVITLNKAYAELIDINPEDAIGRHIKEVIPETELHLVSQTGKTQIGEVLRVKGREAV 224 Query: 275 -----FESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQ 329 + I AV + Q + ++ ++ + Q +T ++ Sbjct: 225 VMRYPINKDGRIIGAVSKVMFRDVNQFITSAKTVYSSQRRIKGEPEQWASARYTVDNLIG 284 Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 RL R+ A VL+ GE G GK LL+ ++H S R GP++ VNC + Sbjct: 285 KSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNCAAVPE 344 Query: 390 AALAEEFIGG---DRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 L E G T + G ++ + E A+GGT+FL++I + + +Q+ LL+V+++ I Sbjct: 345 NLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVLQEKEI 404 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 RL R ++V+V+A T L ++ N F LYY L+ + IP LR R + L Sbjct: 405 ERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERIDDLKDL 464 Query: 506 VNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 V L F + + DAL + WPGN EL +V+E D I V L Sbjct: 465 VEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVVERAFNLVDGHIIDVMHL 524 Query: 565 PEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK 624 P +L + S + SL +VEKEAI +A VT G + + +LGI R L++K Sbjct: 525 PPYLQKFGKSKRHSINKSLPSL-LEQVEKEAIADALSVTNGNKMQAAKILGISRAWLYKK 583 Query: 625 MKQHGIDA 632 + Q+GI A Sbjct: 584 IAQYGIKA 591 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 56/124 (45%), Gaps = 8/124 (6%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L ++ + VI+ D G + N R+ ++ A + GR ++E++ + +L+ +K + Sbjct: 35 VLNAIYNVVIAVDYSGKIIVYNHGCERLFKVPAEKAMGRFVSEVVPMTGLLK-VLKTGNS 93 Query: 268 LKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS--QLGKVSHTF 324 H+ F + ++ PI+ + + + + + +++Q+ + ++ T Sbjct: 94 --HIGRKFVQGNSL--YIVNRTPILHDNKVVGAVGVAQDITELQQIANELNSVNEMKSTL 149 Query: 325 AHMP 328 + Sbjct: 150 ETII 153 >UniRef50_A2SCN8 Transcriptional regulator AcoR n=5 Tax=Betaproteobacteria RepID=A2SCN8_METPP Length = 676 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 153/645 (23%), Positives = 252/645 (39%), Gaps = 38/645 (5%) Query: 15 LIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 LI SW RC + P R + L + + +E ++ ++ Sbjct: 28 LIHRSWHRCVNTHGLDPAQSFGPRVESPTRLRESRERIEEYLQVARGGMEQLFKRVSDLG 87 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 L + D + G+ + G G E I GT + A+ Sbjct: 88 YVLLLTDADGVTVDYIGNDSWGKDAQRAGLYLGANWKEEIAGTNGIGTCIYEQAALTCHR 147 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC---PVEQTTAA-DLPLTLAIAREVGNL 188 D HF + PLF G+L G + ++ P + + L LT + + + Sbjct: 148 DDHFYTGNVGLSCNTAPLFHPDGKLMGVLDVSALAMPNARESQHLALHLTTLYGQMIEDA 207 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL------RLDATA 242 L AL++ + D ++++D G L + A + L D Sbjct: 208 NFVRHFRDHWILRLATSWALVDVLGDMMLAFDSDGVLAGASTGARKWLSGLALQGGDDAP 267 Query: 243 SQGRAITELL--TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 +GR +T++ ++ + + A + + + F+ Q F V + Sbjct: 268 IEGRHLTDVFRCSMDDIWRLARSSNVMDRALLSAFDHQSYFGSVVAPRMRSAASSAAGP- 326 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 V + + + DD Q R L R+ A +L+ GE G G Sbjct: 327 ---RDVTDAAPALAPASPAL----ERLAGDDKQMRALQDQARRLANKRINILIQGETGTG 379 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAH 416 K + ++A+H S R P++AVNC ++ + E G G T G + AH Sbjct: 380 KEVFAKALHESSTRHDKPFVAVNCASIPESLIESELFGYTAGTFTGARSRGMKGLIVQAH 439 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL++I + + LQ+ LL+V+ + + L A R I +++ VIA + DL L+ Sbjct: 440 GGTLFLDEIGDMPLHLQTRLLRVLSEHEVLPLGADRPIRVELTVIAASHRDLRQLIAAGS 499 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 F LYY L + +P LR RR + L+ LR + TR I D+AL L W Sbjct: 500 FREDLYYRLCGATLPLPALRDRR-DLGYLIELILREEAEHLDTRAYIADEALELLERYEW 558 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHL-------FTEQATDDVSATRLSTSLSFA 589 PGN +L +V+ SD I LP + A+ V A ++ S Sbjct: 559 PGNVRQLRNVLRFGLALSDGEGIYPEHLPPEVTAPPVLLLLPPASGAVPAVSVAQSPPAR 618 Query: 590 EV----EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E E ++ A Q I ++A G RTT++R+MK+ GI Sbjct: 619 AMTRPPEAERLLAALQEHRWNITAVAAQAGQNRTTIYRQMKRFGI 663 >UniRef50_D1RT04 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT04_SEROD Length = 647 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 139/632 (21%), Positives = 261/632 (41%), Gaps = 35/632 (5%) Query: 16 IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLT---LGQAALEDAWEYMAPRE 72 I SW+RC + + + +A+ + + + ++ M + L ++ +A Sbjct: 32 IRDSWQRCVEHHGLDPRRM-QEARILPWHELREHRQEMEEFRHIAHHGLTVLYQQIAAAG 90 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D + GD L G G E GTCA+ A +G+A+ Sbjct: 91 YVVLLTDARGITVDYLGDANAEISLRRAGLFLGAQWTEACAGTCAVGTALATGKALTVHQ 150 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR----EVGNL 188 HF A PLFD +G+L + ++ + L L +A+ ++ N Sbjct: 151 ADHFDATHIPLTCTAVPLFDPQGQLNAILDISALSSPQPKSSQQLALQLAKIYAHQIENA 210 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL----RLDATASQ 244 + L+ ++ +E D +I++D G + N +A R+L + A Sbjct: 211 WFEHRHRGDWVLKLSPASSFVEVSPDFLIAFDAAGKVVGHNHRAQRMLENELGIAAPPVH 270 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 R+ + + +I A+ Q ++ + + + ++ + Sbjct: 271 CRSTLLGWPIEQLFNTSIDSLPDWL---ASASGQQGTLERARSGEKL-------YVTAVQ 320 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 PV + + + G + A + D + + + + +++ GE G GK Sbjct: 321 PVRRAPRKAAASQGALPPALAALNGGDAALQLQLQRAARLLEAPLHLMVHGETGCGKEFF 380 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTL 420 ++A H S R ++AVNC A + E G G + GR ++ A GGTL Sbjct: 381 AKAFHQASNRRHRAFVAVNCAAIPAALIESELFGHLPGSFSGAGSKGRRGLIQEADGGTL 440 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + +E+Q+ LL+V+ + + + A R + +D++VI+ + L LV++ RF Sbjct: 441 FLDEIGDMPLEMQTRLLRVLAEQEVLPVGASRPVSVDIRVISASHHALDQLVQEGRFRAD 500 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 L+Y L I++P LR R + LV+ L + + ++ A RL WPGN Sbjct: 501 LFYRLQGARISLPALRQR-SDLDWLVDKLL-------AGKAQLSAAARRRLHQHRWPGNL 552 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL + ++ A D GRI +DLPE L + + E + +I Sbjct: 553 RELSNALDYAAALCDGGRIEATDLPEGLTAAIPASPLPMVNAEADAALP-PEAQLLIQYL 611 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + ++ +GI R TL+R+M++ GI + Sbjct: 612 RAARWNHSAVARQMGISRMTLYRRMQRFGIQS 643 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 118/458 (25%), Positives = 212/458 (46%), Gaps = 24/458 (5%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 L ++L L+ +LE DG++ D+ G + IN A L +D S G+ +TE++ Sbjct: 112 EELKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSIGKHVTEVI 171 Query: 253 T---LPAVLQQAIKQAHPLKHVEATFESQHQFI-----DAVITLKPIIETQGTSFILLLH 304 + V + I + L+ V+ + ++ + V ++ LL Sbjct: 172 ESTRMHIVAKTGIAETAQLQKVKGKYMIANRIPVIENGELVAVAGKVLFKNIKELDLLYK 231 Query: 305 PVEQMRQLMTSQLGK------VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + G+ S++F ++ + + ++AA+++ VL+ GE G Sbjct: 232 KIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNVLIRGESG 291 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLEL 414 GK L + AIH ESER G +I +NC L E G + T + G++ + EL Sbjct: 292 TGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEGKIGKFEL 351 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGT+FL++I + + +Q+ LL+V+++ + R+ A R IDV+VI+ T DL ++++ Sbjct: 352 ADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRDLEKMIKE 411 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVS 533 F LYY L+ + IPPLR RR I L L + K+ + K +A++ L++ Sbjct: 412 GEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKEAMSCLMN 471 Query: 534 CAWPGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 W G +L ++IE + N I P ++ + + + S + +VE Sbjct: 472 YKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDS----DLNKLINQVE 527 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 K+ I+ + L I RT+L+ K+ +H I Sbjct: 528 KDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR n=1 Tax=Pseudomonas stutzeri RepID=Q9F9U3_PSEST Length = 634 Score = 548 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 169/632 (26%), Positives = 278/632 (43%), Gaps = 28/632 (4%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTF-ASIYRRKKAMLTLGQAALEDAWEYMAPR 71 S +IA SW+R + +A V I R + +L ++ +AP+ Sbjct: 20 SQVIARSWQRSQNYGLCPRDKLLFEAPLVASGKQIAERDRLLLDCAMPEMQQLHAALAPQ 79 Query: 72 ECALFILDETACILSRN-GDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + L +D +LS G ++LS + F G +E +GT A A ++V Sbjct: 80 DWVLACIDLEGVVLSSLSGRGAGTRELSQV-FRIGAQLSEQNVGTTAPGCALAERESVFF 138 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 + ++H+ + ++ ATP+F G + G + + + L AR + N L Sbjct: 139 VGEEHYLEEARQFSCLATPIFGLDGGIVGVLDASSRQGAPSVYTLESLEFAARAIENRLF 198 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 L HL+ +L + +G++++D G L+ N A ++L L G E Sbjct: 199 AQ-LGEVLLVHLHHRLDILGTPLEGLLAFDPAGKLRCANRIAGQLLHL-GEVRAGLDFAE 256 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 L +P A + H L + A IT P T T E R Sbjct: 257 LFDMP-FAHAACYRRHDLSAPLRLRSHHGGELHACITQGPPQRTAPTL-------AETPR 308 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 T++ H+ + DP + + R+A PVL+ GE G GK + ++ +H Sbjct: 309 PRRTAESLPAPHSGPCL--QDPALQDALARARKAFARDIPVLINGETGTGKEVFARLLHE 366 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLEKIE 426 S RA ++A+NC + + E G G T + G + ++E AH GTLFL++I Sbjct: 367 GSARAGEAFVAINCSSIPASLIESELFGHVEGAFTGSRKGGAIGKIEQAHKGTLFLDEIG 426 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +ELQ LL+V+++ ++RL + +LI +D +I T DL L + F LYY ++ Sbjct: 427 DMPLELQGRLLRVLQERNLSRLGSNQLIKVDCALICATHRDLQQLSAEQGFREDLYYRIN 486 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 +++P LR RR + AL+ + LR E L++ AL L+ WPGN +LY Sbjct: 487 GLRVSLPALRERR-DLGALIQHLLR-AETTGQQSLQLSPAALQALLDYHWPGNIRQLYQC 544 Query: 547 IENLALSS-DNGRIRVSDLPEHLFT----EQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 + A + D+G I V LP+ + + AT L + E AI A + Sbjct: 545 LRLAAALAEDDGEIGVQHLPDEVRAGCGEQAATVAGEGLTLEAGSTLQLAEARAIRAAVE 604 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 GG + + LGI R TL+RK+K G++ G Sbjct: 605 AAGGNLSAAARSLGIARATLYRKLK--GMEEG 634 >UniRef50_B1Y0Y8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Burkholderiales RepID=B1Y0Y8_LEPCP Length = 705 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 141/690 (20%), Positives = 257/690 (37%), Gaps = 73/690 (10%) Query: 3 GAFNNDGRGISPLIATSWERCNK--LMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 G+F + + +A SW RC L+ + + R ++ + Sbjct: 21 GSFGEESNDV---VARSWRRCMDEYLLHPDRPRDLRALDPAAIEARLDRMSTLVDCARHE 77 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 + ++ +A E A+ + D IL P ++++ LG G +E GT + Sbjct: 78 MATLYQQLADDESAVVLTDTDGVILHMVASPDFAREVAPLGLRTGVVWSETEAGTNGMGT 137 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 + V D+HF A P+++ G + + ++ L L Sbjct: 138 CLAAACPVSVQRDEHFYTQFTGLTCSAVPVYNPSGEMAAVLDVSSRSTLMQQHLLVLLGM 197 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-D 239 AR + N L+ H + + ++ +G ++ + G + N A L L Sbjct: 198 TARMIENRLIDQCFRHAHPLHFHSRPEFVYTLHEGRLAVSDDGRILAANRSALFQLGLQS 257 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET---QG 296 + R I ++ H T+ + + +P +E QG Sbjct: 258 VNDIRSRRIEDIFQTSQEDLLQRSSLSSF-HPVVTYRANAANRFFAVMRRPALEAGALQG 316 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSH-----TFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + L+HP R + T + + T A + DPQ R + R+ PV Sbjct: 317 QGAV-LIHPAGPGRSVATRAAAQAAAARPPGTVATLA--DPQLARHLDVARRVIARQTPV 373 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-G 407 LLCGE G GK + ++ +H S A G ++AVNC ++ + E G G T + G Sbjct: 374 LLCGETGSGKEVFARLVHEGSPNANGAFVAVNCASLPESLIEAELFGYRAGAFTGAQRSG 433 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ++ A GGTLFL++I + ELQ+ LL+V+++ +T L + I + ++++ + + Sbjct: 434 RRGKILQADGGTLFLDEIGDMPPELQARLLRVLEERQVTPLGSEETISVQFQLLSASHRN 493 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 L LVE+ F LYY L E+ +P LR R L+ + L T ++ A Sbjct: 494 LLDLVEKGAFREDLYYRLAGVEVNLPALRER-SDRHELMRSLL---VAEGGTDARLSPAA 549 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF------------------ 569 L++ WPGN +L V+ + +D I V LP L Sbjct: 550 EDLLMAYPWPGNVRQLRHVLRSACALADGEPIEVEHLPLALRKTVAAGEYGVSGALPSIA 609 Query: 570 -----------------------------TEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 + D+ + E++ ++ Sbjct: 610 SPAVVARLVAPPHDAAPNLPAEGDSAGLAADHRADEPAEEPPLKLNPILANERQVLLKML 669 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + ++ + R TL+R++ + I Sbjct: 670 EQHRWNVSNVAKAFDVSRNTLYRRLHKLHI 699 >UniRef50_B2JX43 GAF modulated sigma54 specific transcriptional regulator, Fis family n=8 Tax=Burkholderiales RepID=B2JX43_BURP8 Length = 701 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 139/655 (21%), Positives = 259/655 (39%), Gaps = 44/655 (6%) Query: 16 IATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 +A SW RC + +P + ++ + + ++ +A E Sbjct: 31 VAQSWTRCLVDFGLDPGRFVMPPVLTQQELNTHREAAGDLIACSKLEMTTLYQQLADPEL 90 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 A+ ++D I+ + + ++A G G +E GT + + + Sbjct: 91 AVILVDANGVIVHQVSSVPFGEAVAADGLRVGAVWSEREAGTNGMGTCLTERECLAIYQH 150 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF + A P+FD +G + G + + + L L + + N L+ Sbjct: 151 EHFYPRYTSLTCSAAPIFDERGTIVGVLDVTSRSKMLQQHSLVLVGMSRQMIENRLIDSR 210 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRAITELL 252 H + + ++ G ++ D+ G + N A L L G+ I E Sbjct: 211 YRRANTVHFHSRPEFVGTLHAGKLAVDDDGVVLAANRSALFQLDLRSPDQLCGKRIEEAF 270 Query: 253 --TLPAVLQQAIK-QAHPLKHVEATFESQHQFIDAV--------ITLKPIIETQGTSFIL 301 TL ++ ++I+ HP+ A ++ I + +G + Sbjct: 271 SATLEDMIARSIRGSFHPITVYSAHANNRFFVIAQTPRDAESFGAASHALPSARGPWSDV 330 Query: 302 LLHPVEQMRQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 ++ + + ++ +H+ DP+ + + P++L G+ G G Sbjct: 331 SINRNARAKTPREAKPAAAGLDKLSHLEFGDPRMAAQSQLAARVIQRKIPIILRGQTGTG 390 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAH 416 K + + A+H+ S AAG ++AVNC + + E G T GR ++ A+ Sbjct: 391 KEVFANALHSISPNAAGAFVAVNCASLPETLIESELFGYRAGAFTGAQREGRRGKIVQAN 450 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GTLFL++I + + LQ+ LL+V+++ +T L A I +D ++I+ + +L LV++ Sbjct: 451 NGTLFLDEIGDMPMALQARLLRVLEEHEVTPLGAETTIKVDFQLISASHRNLLDLVQRGL 510 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 F LYY L+ EI +PPL R + LV + L S ++ +A L S AW Sbjct: 511 FREDLYYRLNGIEINLPPLCER-ADLLPLVQHILES---ESDDPPELSAEARQALASYAW 566 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA----------------- 579 PGN +L V++ D IR + LP + + + A Sbjct: 567 PGNIRQLRHVLQMAIALCDGPEIRCAHLPAEIVDDARGTNPRASSAGQFAQPARAAVAPP 626 Query: 580 ----TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 T LS + E+E ++ + ++ LGI R TL+RKM + I Sbjct: 627 FDDDTDLSALNAIQLKERETVLAMLDEHRWNVSNVAKTLGISRNTLYRKMHRLHI 681 >UniRef50_D0FRF9 Transcriptional regulator n=2 Tax=Erwinia pyrifoliae RepID=D0FRF9_ERWPY Length = 643 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 149/638 (23%), Positives = 258/638 (40%), Gaps = 49/638 (7%) Query: 13 SPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 I SW RC +L + E + H R +A + + AL+ ++ +AP Sbjct: 29 DQAIRDSWLRCVELHRLEPGRMQEAHILPWAQLCEHRERIEAFRCIARHALKALYQQIAP 88 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D ++ GD L G G +E +GTCA+ + +G+A+ Sbjct: 89 AGYVVLLTDVQGVVVDFLGDETAGNGLRRAGLFPGAQWSEACMGTCAVGTSLATGRALTV 148 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIA----REVG 186 HF A PLFDSKG+L + ++ + L L +A ++ Sbjct: 149 HRGDHFDATHIALTCTAVPLFDSKGQLIAVLDVSALDSPQPKSSQQLALQLARLAAHQIE 208 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD------- 239 N L + L+ E D +I++D G + N +A R+L + Sbjct: 209 NAWLMHCHRTDWVLKLSPSYPFNEVSADFLIAFDTAGRVAGYNQRARRMLEHELVNCPSP 268 Query: 240 ---ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 + GR I +L T + + ++ + + Sbjct: 269 YHGRSTLLGRPIDQLFT------------TTIDSLPLWLTGADGSQKTLL----LCNSGS 312 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + P + +++ + A + D ++ + + + +L+ GE Sbjct: 313 ALYASARQPDGRSAHQRSTEARALPTPLAALCGGDADLQQQLQRAARLLNTRLHLLVHGE 372 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRL 412 G GK ++A H ER P+IAVNC + E G G + GR + Sbjct: 373 TGCGKEYFARAFHQSGERGNQPFIAVNCAAIPAELIESELFGHLPGSFSGAGSKGRRGLI 432 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 + A GGTLFL++I + + +Q+ LL+V+ + + + A R +P+D++VI+ + L LV Sbjct: 433 QEADGGTLFLDEIGDMPLMMQTRLLRVLAEQEVLPVGASRPVPVDIRVISASHHALDRLV 492 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 EQ RF L+Y L +I++PPLR R + L+ N L ++++ A RL Sbjct: 493 EQGRFRADLFYRLQGAQISLPPLRQR-SDLDWLIGNMLD-------AQVQLSTAARQRLH 544 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL +V+ + GRI V DLP+++ Q + R Sbjct: 545 QHGWPGNLRELSNVLAYATAMCEGGRIEVIDLPDNIGEPQFSQQSLCNRPELPQDAL--- 601 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 II + + +GI R TL+R+M+++GI Sbjct: 602 --RIIQHLRAARWNHSAAARQMGISRMTLYRRMQRYGI 637 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 142/532 (26%), Positives = 238/532 (44%), Gaps = 40/532 (7%) Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA-IAREVGNL 188 ++F +++ D TG + + Q L A A + + Sbjct: 51 VFVTENFCELVKFNN------LDVIIETTGVPEVQEKLRQIRGNSTALMEAQAANLMMAI 104 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L L E R +L+A+L SM + + D G ++++N +R+ + G+ I Sbjct: 105 LKEKEELLEFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNI 164 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVE 307 E + L +K + + D V PI+ + + + + Sbjct: 165 FE-ASPDGALATVLKTGKVVFGQRTKVGGSN--ADVVSNSAPIVVDGKMEGAVCVFQHFT 221 Query: 308 QMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + LM Q+ ++F + D P+ R+ I ++A+S+ V Sbjct: 222 DIMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTV 281 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGR 408 L+ GE G GK LL+ AIH S R P+I VNC D L EF G T + Sbjct: 282 LILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSK 341 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + + ELAHGGT+FL++I + + LQ+ LL+V+++ R+ + I +DV+VIA T +L Sbjct: 342 IGKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNL 401 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 L+ Q RF LYY L+ EIT+PPLR R+ +PALV++ + SL ++ +K I DA Sbjct: 402 RELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDA 461 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 L S WPGN EL +VIE + +++D + + +H+ + +S+ R + Sbjct: 462 EEVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFR----MSSERDVDLMP 517 Query: 588 FAEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 ++E+ I A G + + L I TL+ K+K+ I +K Sbjct: 518 IEQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK--IKVANYK 567 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 131/554 (23%), Positives = 243/554 (43%), Gaps = 29/554 (5%) Query: 109 AEGIIGTCALSLAAISGQAV-----KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIAL 163 AEG++ C SLA +SG++V K + D L K RL G + + Sbjct: 143 AEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFEDSQLIRIIRTGKAESTQKVRLGGKVYM 202 Query: 164 ACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQG 223 + A+ +++ L + L T R +L+A++ES DG+ D +G Sbjct: 203 TNRTPIFMGGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIESSFDGIYVTDGEG 262 Query: 224 NLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFID 283 +N R + G + EL+ + + + E+ + Sbjct: 263 RTLRVNKAYERTTGIRREDVVGHTMAELVEQGFFNESVSMRVLENRKGESLVQKVKTGKT 322 Query: 284 AVITLKPIIETQGTSFILL---------------LHPVEQMRQLMTSQLGKVSHTFA--- 325 ++T PI + +G +++ L +E +R ++L ++ + Sbjct: 323 VMVTGTPIFDDKGEISLVVTNVRDVTELYNLQNELGRMEVLRTWYENELEQLRESAGAAP 382 Query: 326 HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCE 385 + + + + + AR VL+ GE GVGK + + IH S R P++ ++C Sbjct: 383 SVVIRSKKMKEVHELAMRLARVDATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCA 442 Query: 386 LYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIK 441 + L E G + T + G+ E A GGT+FL++I + + LQ+ LL+V++ Sbjct: 443 AIPEQLLESELFGYEAGAFTGAKAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQ 502 Query: 442 QGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGS 501 I R+ A + +D++++A T DL+ +V + F LY+ L+ + IPPLR R+ + Sbjct: 503 DKKIMRVGANHSMDVDIRILAATNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEA 562 Query: 502 IPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRV 561 I + L +++ +I D L L WPGN EL + +E + + + I Sbjct: 563 IVNFAYHFLEKYNRKYGFAKQIAPDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEP 622 Query: 562 SDLPEHLFTEQATDDVSA-TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 +DLPE L + A S + +E+E + A + T G +++ LG+ ++T Sbjct: 623 ADLPEKLRIAPKSGLAHALGGGSLKSALEGLEREILQQALE-THGSTHKVAKALGVNQST 681 Query: 621 LWRKMKQHGIDAGQ 634 + RK++++GID + Sbjct: 682 VVRKLQRYGIDPKK 695 Score = 67.1 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 32/182 (17%) Query: 153 SKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESM 212 GR+ G ++ + EQ L + + +++ L+S+ Sbjct: 99 ESGRIIGVVSRSRVSEQIHKGSLSV------------------------MRRMSIFLDSI 134 Query: 213 DDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVE 272 + V++ D +G + F N A+V G+ I +L + L + I+ + Sbjct: 135 YNPVVAIDAEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFE-DSQLIRIIRTGKAESTQK 193 Query: 273 ATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMT--SQLGKVSHTFAHMPQ 329 + + PI + +L + ++ + ++S + + Sbjct: 194 VRLGGKV----YMTNRTPIFMGGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIE 249 Query: 330 DD 331 Sbjct: 250 SS 251 >UniRef50_C8Q8H1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pantoea sp. At-9b RepID=C8Q8H1_9ENTR Length = 616 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 141/625 (22%), Positives = 248/625 (39%), Gaps = 57/625 (9%) Query: 16 IATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 + SW RC + + ++ +A+ + Q LE ++ +AP Sbjct: 33 VQASWLRCVNHHGLDPSRLQEARILPARQLREHCQQLEALRVVAQPGLEKLYQQIAPAGY 92 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 L + D + G+ L G G +E + GTCA+ A + QA+ Sbjct: 93 ILLLADAQGVAVDYLGNANAEISLRRAGLFLGAQWSEALSGTCAVGTALATRQAITIHQT 152 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE----VGNLL 189 HF A PLFDS+G L + ++ + L L +A++ + N Sbjct: 153 DHFDATHIPLTCSAVPLFDSQGDLQAVLDISALTSPQPRSSQHLVLQLAQQQAQKIENAW 212 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 L + L++ + + ++++D G L +N A L G ++ Sbjct: 213 LLHRHRHDWVLKLSRHPGWHDIEPEFLLAFDANGRLTGLNPAARHWLSAHP-QPLGLPLS 271 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L P + Q + + + T+ P L Sbjct: 272 ALFPGPLEQLLSTPQLEDISGQQRFYAQ---------TVHPARPASTAGVTL-------- 314 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 S A + DPQ + + + +S +L+ GE G GK ++A H Sbjct: 315 -----------SPKLAALSGGDPQLDQQLRRAGRLLDTSLHLLVQGETGSGKEYFARAFH 363 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKI 425 S+R GP+IAVNC + L E G G + R ++ A GGTLFL++I Sbjct: 364 QASQRRKGPFIAVNCAAIPASLLESELFGHLPGSFSGAGSKARPGLIQAAEGGTLFLDEI 423 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + +E+Q+ LL+V+ + + + AR+ +D++V++ + L V F L Y L Sbjct: 424 GDMPLEMQTRLLRVLAEQEVLPIGARQPQKVDIRVLSASHHPLTQRVAAGLFREDLLYRL 483 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 I +PPLR R+ I L++ L + + ++ A L+S WPGN EL+ Sbjct: 484 QGACIQLPPLRERQ-DINWLIDQML-------AGQAQLSPPARHALLSYRWPGNLRELHH 535 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 ++ ++G I + DLP+ L V+ E++A++ + Sbjct: 536 ALQYALAMCESGIIAMDDLPDTLRVTAPAQPVAVND----------EQDALLRQLRAARW 585 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGI 630 + E + LGI R TL+R++++ GI Sbjct: 586 NMSETARQLGISRMTLYRRLQRLGI 610 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 544 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 141/564 (25%), Positives = 242/564 (42%), Gaps = 34/564 (6%) Query: 98 SALGFNDGTYCAEGIIG-----TCALSLAAISGQAVKTMADQHFKQVLWN--------WA 144 L GT C + +G A G+++ + L +A Sbjct: 30 HHLNRIAGTGCYKEQVGEKVDENSAFGFVLRQGESLIIENPRQHDICLQCENVGNCMEYA 89 Query: 145 FCATPLFDSKGRLTGTIALACPVEQ-------TTAADLPLTLAIAREVGNLLLTDSLLAE 197 P+ K ++ G I L E+ + +A + + ++ + Sbjct: 90 EVCCPI-KVKDQIVGVIGLIAFEEEQKTAMIGNQKNLMEFLNKMADLISSKVIEQESTDQ 148 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 + +L +L+S+D G+I+ D G + N +A + +L R I +LL V Sbjct: 149 IKFLVKELETVLDSVDRGIIAVDGTGKIIHYNKRAIGLFKLSENEVCDRNIKDLLEEFDV 208 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTS- 315 K++ +K+ + + V PI I ++ + + + ++ Sbjct: 209 -NLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPIRIGSENFGIVFTFSNISDVLGIINDM 267 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G + F + + + G +AA+SS VL+ GE G GK L ++AIH S+R Sbjct: 268 TTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSSSTVLIQGESGTGKELFARAIHFHSQRC 327 Query: 376 AGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVE 431 P+I +NC + L E G + T + G+ + ELA+GGT+FL++I + + Sbjct: 328 KKPFIPINCAAIPEQLLESELFGYEEGAFTGAKRGGKSGKFELANGGTIFLDEIGDMPLH 387 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 LQ+ LL+V+++ VI ++ + IPID ++IA T DL V + F + L+Y ++ + Sbjct: 388 LQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDLENRVLEGEFRQDLFYRINVIPLH 447 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR R + LV+ L ++ ++ + +S WPGN EL + IE Sbjct: 448 IPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVHPGVFDVFMSYQWPGNVRELENTIEYA 507 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE- 609 I DLP+ L Q + R T S E+E++ +I A G Q Sbjct: 508 VNMCSGSIIMERDLPKRLSRRQTESKDESFRGIT--SIQELERKEMIKAIAYFGNTKQAI 565 Query: 610 --MSALLGIGRTTLWRKMKQHGID 631 + LGIGR TL+RK+K +GI Sbjct: 566 TMAATALGIGRATLYRKLKIYGIK 589 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 233/473 (49%), Gaps = 14/473 (2%) Query: 166 PVEQTTAADLPLTLAIAREVGNLLLTD-SLLAETNRHLNQLNALLESMDDGVISWDEQGN 224 +E+T L + + + +L + + QL A+L+++++G+I+ D G Sbjct: 44 EIEKTDKKTLKQIIDDLKNIPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDSHGT 103 Query: 225 LQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 + N A + + G+ + +LL + + +K + E + + + Sbjct: 104 ISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLHY 163 Query: 285 VITLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 + + +PI + G + +L P+ ++R+L+ + ++F + + R ++ + Sbjct: 164 LTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMAK 223 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG--- 399 + AR+ VL+ GE G GK L ++AIH ES R P++ +NC ++ L E G Sbjct: 224 KVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEG 283 Query: 400 DRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T + G + LE AH GTLFL++I L LQ+ LL+V+++G + R+ + IP+D+ Sbjct: 284 AFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDI 343 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA T +L +V + +F LY+ L+ F + IPPLR R I L + L + KR Sbjct: 344 RIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRG 403 Query: 519 TR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV 577 + +I ++AL +L + +WPGN EL +VIE +D+G I D + + + Sbjct: 404 IQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDGVIEAKD----IILDNPQNTY 459 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 R + + +VEKE I A + I++ + LG+ TTL K+K+ + Sbjct: 460 FVAR-TLEEAVNQVEKELIERALKQY-PSIRQAARSLGVTHTTLRNKIKKLKL 510 >UniRef50_B1XZ38 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=B1XZ38_LEPCP Length = 753 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 137/591 (23%), Positives = 236/591 (39%), Gaps = 36/591 (6%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQG-VTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 I S ERC G + R + + +E +E + + Sbjct: 37 ERIDESHERCQAFGLSRIERPDFSPMGRSDLGVVRDRNQRLYVHAAPVMEMLYEQIVNSQ 96 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D T I+ GD L + S + G +E GT + A I A Sbjct: 97 NMVVLTDATGTIIHSIGDDDFLSRASKVALQPGANWSESSKGTNGIGTALIEETPTLVHA 156 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 D+HF A P+ D +G + G + ++ + L AR + N L+D Sbjct: 157 DEHFLHANHFLTCSAAPILDPRGNILGVLDVSGDQRSYHQHTMGLVKMSARMIENHWLSD 216 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 H + + ++ +G+++ + G L N A L L A + +T L Sbjct: 217 DYRNVMRLHFHSRVEFIGTLMEGILAVSQDGKLVGANRGALEQLGLSGAALRMHTLTSLF 276 Query: 253 --TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL--LLHPVEQ 308 T+PA++ + VEA S QF P+ S + VE+ Sbjct: 277 GTTVPALVDRFRSPLAAPLSVEA--GSGRQFHVYARFSWPVWHNADPSVRDEPVQPAVER 334 Query: 309 MRQLMTSQLGK---------------------VSHTFAHMPQDDPQTRRLIHFGRQAARS 347 ++ + G+ A + D L+ R+ Sbjct: 335 STDRVSERAGERPAAPAPSASAAEPRQAAGQGSREGLASLTTGDAAVGTLVDKIRRVLNR 394 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN 404 P+L+ GE G GK LL++AIH +SERA P++AVNC D + E G + T Sbjct: 395 DIPILILGETGTGKELLARAIHQDSERAKQPFVAVNCASIPDTLIEAELFGYEEGAFTGA 454 Query: 405 E-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 G + R+ A+GGTLFL++I + + LQ+ LL+V+++ +T L + + + +DV ++ Sbjct: 455 RRKGAVGRIVQANGGTLFLDEIGDMPLALQAHLLRVLQERQVTPLGSGKAVAVDVTLVCA 514 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI 523 T +L ++EQ F LYY L+ + +P LR R + ALV+ L R RL++ Sbjct: 515 THRNLREMIEQKTFREDLYYRLNGLAVRLPALRER-SDLMALVDRILERECPR--RRLQL 571 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQA 573 + + WPGN +L++V+ + + ++ L + + Sbjct: 572 SAEVVKLFQGYHWPGNVRQLFNVLRTACVMAAGDSQVTRDHLSDDFIEDAG 622 Score = 62.8 bits (152), Expect = 3e-08, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 S S ++E ++I A + GG I + LGI R T++RK++ Sbjct: 705 EPSRSLEDIELQSIRLAVEAAGGNISVAAKRLGISRNTIYRKLR 748 >UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteobacteria RepID=Q4ZVN8_PSEU2 Length = 617 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 146/626 (23%), Positives = 258/626 (41%), Gaps = 32/626 (5%) Query: 15 LIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLG-QAALEDAWEYMAPRE 72 +I SW RC +T Q G + + R ++ Q L ++ Sbjct: 13 IIQDSWTRCRDFGLSHQTRPSFGQLPGTEVSRLLERHHGLVQTTHQEVLPVYENILSNSS 72 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 C + + D +L G + ++ A GF G E GT A+ A +A+ Sbjct: 73 CLILLADRQGQLLKSWGAQRFVESSQAQGFMPGASWNERGTGTNAIGTALACEEAIHIEP 132 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 D+HF + A+P+FD+ R+ + ++ + L + +++ V N L+ D Sbjct: 133 DEHFLKANRFMTGSASPIFDADRRIIAVLDVSSDSFLPPSHTLGMVKMMSQSVENRLILD 192 Query: 193 SLLAETNRHLNQLNALLESMDD---GVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + + N L ++D G++ +DE G + N +A +L G +I Sbjct: 193 QFRDSHFQLI--FNTGLNNLDSQWAGLLIFDESGQILCANRRADTLLGTAPA---GASIE 247 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L P + + +A P + A ++ Q + T KP+ LH V Sbjct: 248 TLFKCPILQLLSETEARPF-ALHAFGNNRFQCLLKRPTRKPLK----------LHCV--- 293 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 Q + + D + + + ++ P+L+ GE GVGK + +A+H Sbjct: 294 -QAAQVPAAPRNLDLQAISLGDAKVEKAVRQAQRLLEKDIPLLIHGETGVGKEVFVKALH 352 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 S RA+ P IAVNC + E G + T + G + + A GTLFL+++ Sbjct: 353 QASARASQPLIAVNCAAIPADLVEAELFGYERGAFTGANQKGSIGLIRKADKGTLFLDEV 412 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + +Q+ LL+V+++ + L + L P+D+++I+ T L V+ F + LYY + Sbjct: 413 GDMPMPVQARLLRVLQERCVQPLGSSELYPVDIRLISATNRGLRDQVQAGLFRQDLYYRI 472 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 I +PPLR R AL+ + + R + L WPGN +L S Sbjct: 473 SGLSIELPPLRERT-DKHALIQR-IWERHRDAHQRAGFSREVLELFEHHPWPGNLRQLNS 530 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE-KEAIINAAQVTG 604 VI+ +D I LPE + D+ L T S E + Q G Sbjct: 531 VIQVALALADEQPIGTDHLPEDFLLDAHADEECRVPLRTQESATRFHSSEDLGQLFQAAG 590 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G + +++ LG+ R TL++++++ I Sbjct: 591 GNVSQLAKRLGVSRNTLYKRLREQRI 616 >UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89NZ8_BRAJA Length = 688 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 155/652 (23%), Positives = 262/652 (40%), Gaps = 40/652 (6%) Query: 3 GAFNNDGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 G + + +I SW+R K + + +L Sbjct: 47 GDAKRESALVRGIIEESWQRSIKSGVNAHCRGSSFVTSPDDLYELRLKNDDLLGSSAQTF 106 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 E + L I D +L GD +T+ + G E + GT + A Sbjct: 107 RRVAEVLGDAATMLVITDRNGVVLDVGGDQRTIDAGHDIRLEVGAAWGETVTGTNGIGTA 166 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA-LACPVEQTTAADLPLTLA 180 ++G+ V A +HF + + W +P+ I + P ++ L + Sbjct: 167 LVTGKPVHVHAAEHFSEGIKAWTCVGSPIRSPIDGSIIGIIDFSGPQAIFHRHNVALAVI 226 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESM--DDGVISWDEQGNLQFINAQA-ARVLR 237 A + L L++ + E R L + M DGV+ D G + N A AR R Sbjct: 227 AANHIE-LALSEKIRLERIRLLEASICRMPGMGSADGVVILDRFGRVVHHNDMASARWRR 285 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + + L + +L + + + P + E E P+I Sbjct: 286 ITQSRELSIGSQILPSREGLLGEDLAEGLPEELREQRIE-------------PLIVDGVV 332 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTF-----AHMPQDDPQTRRLIHFGRQAARSSFPVL 352 +L+ + S++ + T + ++ +AA +L Sbjct: 333 KGAMLVLASKPRTHPAASEMSPTARTALMSAKEAIVGCSEALLDVVQKVERAALGRTAIL 392 Query: 353 LCGEEGVGKALLSQAIHNESERAAG-PYIAVNCELYGDAALAEEFIG---GDRTDN-ENG 407 L GE GVGK L ++ +H S + P++A NC L E G G T G Sbjct: 393 LEGETGVGKELFARLVHAASLKTGKEPFVAFNCGAVSKELLGGELFGHAPGAYTGATREG 452 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R R E A+GG L L++I + ++LQ LL+V+++ + RL + P+DV+++A+T + Sbjct: 453 RPGRFEFANGGVLSLDEIGEMPMDLQPYLLRVLEERAVYRLGDSKARPVDVRLVASTNRN 512 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDD 526 L V + RF + LY+ + + TIPPLR R G + L+++ R +ST L+ + Sbjct: 513 LKQEVAEGRFRKDLYFRIGVVKFTIPPLRDRLGDVEILIDHFNRQFATIYSTQPLRFEAA 572 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF----------TEQATDD 576 + L +WPGN EL ++IENL L + G + DLPE + Q+ + Sbjct: 573 TMELLRRYSWPGNVRELRNLIENLVLMTITGIVTPRDLPEDFVEVAPAQPPSISVQSENS 632 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + + F E+E+ AI A GG I + LG+ R TL+RK+ Q+ Sbjct: 633 ATGSESDEIARFDEMERRAIERAVANAGGNIAAAAEKLGLSRATLYRKLHQY 684 >UniRef50_A1BBZ5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Rhodobacteraceae RepID=A1BBZ5_PARDP Length = 619 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 132/635 (20%), Positives = 239/635 (37%), Gaps = 46/635 (7%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 A + SW RC + + P + + +L + + + Sbjct: 18 AEGETSPRRDADVLASWRRCVNEHQLDPSRHAGPRIVTQKELRQHRQESEELLGVARHGM 77 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 ED + + L + + + GD + ++L G G+ E +GT + Sbjct: 78 EDLYRRVNAMGYVLLLANARGVTVDAIGDAELDRELRHAGLIAGSEWHERHVGTNGVGAC 137 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL-- 179 +G+A+ HF L + A P+ D++G L G + L+ LTL Sbjct: 138 LATGRAITVHRTDHFDVALTPLSCTAVPVHDTRGGLIGVLDLSHLQAPQDKMSQALTLEV 197 Query: 180 --AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL- 236 + R + L A+ LN L+ ++ D +G + + A +L Sbjct: 198 MKSCVRRIEMANLVRRHRADWILRLNPSPEFLDVDPMAAVAIDPEGRISGMTNNARELLA 257 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 A A GR ++ + L A + + Sbjct: 258 GGPAQALIGRRFDDIFAYD------MDDLPKLSRAMAPVDGALEM--------------Q 297 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 ++ V + G + + DP L + V+L GE Sbjct: 298 AGGLIFARAVPPTAPPRRAAEGSLPQPLRAIHGGDPAMECLAERAAKVVDRQISVILRGE 357 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRL 412 G GK +++A+H S R G ++A+NC +A + E G T G+ + Sbjct: 358 TGTGKEFIARAMHESSRRR-GAFVAINCAALPEALIESELFGYTPNAFTGAHARGKKGLI 416 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 AHGGTLFL++I + + LQ+ LL+V+ + + + A R P+D++VI+ + DLA LV Sbjct: 417 REAHGGTLFLDEIGDMPLALQARLLRVLSERELLPVGATRAEPVDIRVISASHHDLAQLV 476 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 + RF + LYY L+ + IPP+R R + L + + + + A+A L+ Sbjct: 477 AEGRFRQDLYYRLNGLVLDIPPVRAR-ADLEWL----IARIAGATEGKPRFSPQAMALLL 531 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 + WPGN E+ ++ E A D + + LP + A A Sbjct: 532 AHDWPGNVREIVNLCELAAAMCDGAPVLPAHLPAGMADRAALSRSPAGSRPE-------- 583 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + ++ GG + + I R+T +R++++ Sbjct: 584 -DELLRLLDEHGGNVSAAARAAKIDRSTFYRRLRK 617 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 119/462 (25%), Positives = 210/462 (45%), Gaps = 16/462 (3%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 A+A + + Q+ +++ + DG+I+ D+ G + N A ++ + Sbjct: 173 AVANALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKKL 232 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + G+ + ++ L + IK P + + A + ++ + Sbjct: 233 PSEVIGKKVETVIP-NTRLYEVIKTGKP---EIGKIQEISGTMIATNRVPIVVGNEVVGA 288 Query: 300 ILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + V +++R+ + + S F + + + +++ ++ A VL Sbjct: 289 VATFQDVAEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDSTVL 348 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGR 408 + GE G GK L +Q+IHN SER GP++A+NC + L E G T + G+ Sbjct: 349 ILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKGGK 408 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 ELAH GT+FL++I + + LQS LL+VI++ + R+ RLIP+DV++I T +L Sbjct: 409 AGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNRNL 468 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 ++ + +F R L+Y + +I IP LR R+ I LV ++ ++ I Sbjct: 469 IEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITSRG 528 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 + L +PGN EL S+IE + I V D+ + + + VS+ Sbjct: 529 MELLKKWDYPGNVRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEIKP 588 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+EKE I + T G + E + LGI RTTLWRK+K Sbjct: 589 LDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN 630 >UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VG28_SPHWW Length = 584 Score = 538 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 157/606 (25%), Positives = 258/606 (42%), Gaps = 33/606 (5%) Query: 38 AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQ-TLQQ 96 A R + ++ + ++ ++ L LD + ++ GD + ++ Sbjct: 2 AAPGERRIATERGERLIRYAMPEMTRLYKAFHTQDWVLACLDVSGFVICSIGDAEGPCRE 61 Query: 97 LSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGR 156 L +L F +G +E IGT A A + + A++HF + ++ A PLFD G Sbjct: 62 LESL-FRNGVSLSESAIGTGAPGCALVEQKPFIVHANEHFLDEIHGYSCAAVPLFDVNGD 120 Query: 157 LTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGV 216 L G + C + ++ AR + N +L D L + L+ LL + V Sbjct: 121 LIGVLNATCRSGRDLSSVCEALRVAARAIENHMLLD-LPGALHVSLHYHPDLLRTPLAAV 179 Query: 217 ISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE 276 +++ E G L N A ++L +A++ + +L AV + + + A P+ Sbjct: 180 LAFSEHGQLLGGNQIARKLLGHTRSATEFDHMFDLPFARAVDELSGRNAEPI------VT 233 Query: 277 SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRR 336 I ++L + LL P R SH + M DP Sbjct: 234 DTPAGIRVHLSLARHADDVMRVGKALLPPPSGKR---------SSHASSDMFCSDPALLD 284 Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 I + A PVLL GE G GK +L++ +H R GP++ VNC D + E Sbjct: 285 TIGDAKLAFARDIPVLLTGETGTGKEVLARELHASGPRRNGPFVPVNCASIPDGLIEAEL 344 Query: 397 IG---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G G T G + E AHGGTLFL++I + + LQ+ LL+V+++ + + + Sbjct: 345 FGYVEGAFTGARRGGAPGKFEQAHGGTLFLDEIGDMPLSLQARLLRVLQERAVMPVGGSK 404 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL-R 511 PID+ ++ T DL LV F LYY + +T+PPLR R + L+ + R Sbjct: 405 DRPIDISLVCATHRDLKALVATGEFREDLYYRIDGLCVTLPPLRER-ADLSELIGQIVDR 463 Query: 512 SLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFT 570 + R L + DDAL L S AWPGN +L ++ + I LPE + Sbjct: 464 EIGDRL--TLSLSDDALECLRSFAWPGNIRQLSLILRRAIALAAGSALIAPRHLPEEMRQ 521 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ S E++A++ A G I + LG+GR TL+RKM+++ I Sbjct: 522 TRSNVGREVA------SLERTERDAVLMALHQCAGNIAATARQLGVGRPTLYRKMRKYNI 575 Query: 631 DAGQFK 636 + K Sbjct: 576 EVQGVK 581 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 224/468 (47%), Gaps = 29/468 (6%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT- 253 + E R ++L +LE+ DG+ D QG + +N+ R+ + G+ E++ Sbjct: 26 ILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQEMVDK 85 Query: 254 ---LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG------------TS 298 + A+K + + + + + T P+++ +G T Sbjct: 86 GFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNVRDITE 145 Query: 299 FILLLHPVEQMRQLMTSQLGKVSH------TFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + L +E+ +QL ++ + ++ P+T+R++ Q A+ VL Sbjct: 146 IVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDSTVL 205 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGR 408 + GE GVGK +++ IH S R+ GP I +NC + L E G + T + G+ Sbjct: 206 ITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGARKQGK 265 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 ELA GTLFL+++ L++ LQ LL+V++ + R+ + IP+DV+++A T DL Sbjct: 266 PGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAATNKDL 325 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 +V + +F LYY L+ I IPPLR RR IP L + L + K++ + D + Sbjct: 326 MEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFNKRFAPDVI 385 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD--VSATRLSTSL 586 RL + WPGN EL +VIE + + + + IR LP ++ + + + + + Sbjct: 386 DRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMFSEIMPLKK 445 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + VEK I A + G ++++ L + ++T+ RK+K++ + AGQ Sbjct: 446 AVEHVEKHLIEQALKKY-GSTRKVARALKVNQSTIVRKIKKYKLSAGQ 492 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 134/497 (26%), Positives = 214/497 (43%), Gaps = 47/497 (9%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 V L + + T L L+++M + V D + +Q N A + +D Sbjct: 53 MVEPYQLMTAFIVLTQNQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQV 112 Query: 244 QGRAITELLTLPAV-LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFIL 301 G ++ E ++ L A++Q ++ V + +I PI E + I Sbjct: 113 VGTSLDEHFASESIRLLDALRQGTSVQRV---YHIPRPDSHVLINAAPIRREGEIIGAIS 169 Query: 302 LLHPVEQMRQLMTSQLGKVSH----------------TFAHMPQDDPQTRRLIHFGRQAA 345 + + ++ +L +H F + + I ++ A Sbjct: 170 IEQDITELVRLNEELAHTTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVA 229 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRT 402 ++ VL+ GE GVGK L +QAIH S R P+IA+NC A E G G T Sbjct: 230 QTDATVLIYGESGVGKELFAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFT 289 Query: 403 DN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 + G+ +LELAHGGTLFL++I L +ELQ LL+ +++ R+ I ++ +++ Sbjct: 290 GAEKKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIV 349 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T L +V RF LYY L+ F + IPPLR RR +P LV + + Sbjct: 350 AATNRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSV 409 Query: 522 -KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS-- 578 +I + + L WPGN +L +VIE L++ +NG I LP + + VS Sbjct: 410 PRISPEVMQALFEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLH 469 Query: 579 --------------ATRLSTSLSFA-----EVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 + S++ A EKE I+ A + T G + + LLG+ R Sbjct: 470 TPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRG 529 Query: 620 TLWRKMKQHGIDAGQFK 636 TL+ KMK+ I+ FK Sbjct: 530 TLYNKMKKFNINEESFK 546 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 535 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 156/617 (25%), Positives = 261/617 (42%), Gaps = 53/617 (8%) Query: 39 QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLS 98 + RR K + L L+ + +FI D A L N + + ++ Sbjct: 345 DITELNELERRLKH-IGLRDRELDTI---LDSSFDGIFITDGEANTLRLNQAFERITGVT 400 Query: 99 A---LGFNDGTYCAEGII-GTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSK 154 A +G N EG G+ L + +A T+ + K+VL +TP+FD + Sbjct: 401 AQECVGRNMKELVDEGYFSGSGTLLVLEKRERATITLVTRTGKEVL----VTSTPIFDDQ 456 Query: 155 GRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETN-RHLNQLNALLESMD 213 G + L + R++ L + + +L+A+ ES Sbjct: 457 GNIM------------------LVVTNVRDITELNELEREFKKMVGLRERELDAVFESSY 498 Query: 214 DGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEA 273 DG+ D + N +N R+L + A GR + EL+ + A + Sbjct: 499 DGLYITDGEANTLRLNEAFERILGVKAEECIGRNMRELVAEGVYSRSGTLLALEKQDQVT 558 Query: 274 TFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTS--QLGKVSHTFAHMPQ 329 A++T PI + G +++ + + ++ +L ++S F Q Sbjct: 559 ITLQAKTGKTALVTSTPIRDEHGNIILVVTNVRDISELNELQEKLGHAEELSRFFQSELQ 618 Query: 330 D----------DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPY 379 + + R LI + A VL+ GE GVGK L++ IH+ S R P Sbjct: 619 EMKLRTQCVIHSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANTIHSNSNRREQPM 678 Query: 380 IAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSA 435 I +NC + L E G + T + G++ E+A G LFL++I L + LQ Sbjct: 679 IKINCGAIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLDEIGDLPLSLQVK 738 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+V++ I R+ + I +DV++IA T +L +VE+ F + L+Y L+ IT+PPL Sbjct: 739 LLRVLQDKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFYRLNVIPITVPPL 798 Query: 496 RMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 R RR IP L N+ L + ++ K+ LA + WPGN EL +++E L ++S Sbjct: 799 RERREDIPILANHFLDNFNQKHGMNKKLSGSILAYFMEYDWPGNVRELENLVERLVVTSL 858 Query: 556 NGRIRVSDLPE--HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 N I DL L E +D+ + + E+ + NA V E++ Sbjct: 859 NQTITAHDLSAWSELKPENKSDNEHGI-VRLQDALENTERRILENAFSVCK-STYEVARA 916 Query: 614 LGIGRTTLWRKMKQHGI 630 LGI + T+ RK ++GI Sbjct: 917 LGISQPTVVRKAAKYGI 933 Score = 95.9 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 40/312 (12%), Positives = 92/312 (29%), Gaps = 66/312 (21%) Query: 41 VTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSAL 100 A + + + +++ + + + D L N + ++ Sbjct: 231 EELARTRELNRQLDAIFESSFDGLY-----------LTDGEGNTLRLNQGFVRIT-GISM 278 Query: 101 GFNDGTYCAE-------GIIGT---------CALSLAAISGQAVKTMADQHFKQVLWNWA 144 G+ E GT ++L A +G+ V Sbjct: 279 EECVGSNMRELVDTGVFSDSGTLLALEKQERTTITLVARTGKEVLV-------------- 324 Query: 145 FCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQ 204 +TP+FD +G + + R++ L + L + Sbjct: 325 -TSTPIFDEQGNI------------------AFIITNVRDITELNELERRLKHIGLRDRE 365 Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L+ +L+S DG+ D + N +N R+ + A GR + EL+ Sbjct: 366 LDTILDSSFDGIFITDGEANTLRLNQAFERITGVTAQECVGRNMKELVDEGYFSGSGTLL 425 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL-----LHPVEQMRQLMTSQLGK 319 + + ++T PI + QG +++ + + ++ + +G Sbjct: 426 VLEKRERATITLVTRTGKEVLVTSTPIFDDQGNIMLVVTNVRDITELNELEREFKKMVGL 485 Query: 320 VSHTFAHMPQDD 331 + + Sbjct: 486 RERELDAVFESS 497 Score = 82.5 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 4/175 (2%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 I L + +A+ +++ L LA T QL+A+ ES DG+ D Sbjct: 199 ILLTNRTPLYKNGRIAGAVAVLQDISELEHIAEELARTRELNRQLDAIFESSFDGLYLTD 258 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 +GN +N R+ + G + EL+ A + Sbjct: 259 GEGNTLRLNQGFVRITGISMEECVGSNMRELVDTGVFSDSGTLLALEKQERTTITLVART 318 Query: 281 FIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMT--SQLGKVSHTFAHMPQDD 331 + ++T PI + QG ++ + + ++ +L +G + Sbjct: 319 GKEVLVTSTPIFDEQGNIAFIITNVRDITELNELERRLKHIGLRDRELDTILDSS 373 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 21/149 (14%), Positives = 62/149 (41%), Gaps = 8/149 (5%) Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L L +++ ++ A S+ + VIS D +G + +N + + A+ ++G Sbjct: 107 SYFHLIWQLCRIWHKNASEWEACFNSIYNPVISIDGEGRINLLNRALEKSTGISASEARG 166 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLH 304 + +T++ T + L + + +AT + Q+Q + P+ + + + +L Sbjct: 167 KKVTDIFT-NSKLNEVLTTGQT----QATRKIQYQDKILLTNRTPLYKNGRIAGAVAVLQ 221 Query: 305 PVEQMRQLMTS--QLGKVSHTFAHMPQDD 331 + ++ + + +++ + + Sbjct: 222 DISELEHIAEELARTRELNRQLDAIFESS 250 >UniRef50_Q02SW3 Transcriptional regulator AcoR n=12 Tax=Pseudomonadaceae RepID=Q02SW3_PSEAB Length = 625 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 143/629 (22%), Positives = 240/629 (38%), Gaps = 49/629 (7%) Query: 12 ISPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + I SW R + + + ++ P R + L + + + Sbjct: 28 VPTPILDSWRRSMEQHRLDPGSLQGPRILSQTLLDECRERSELFLRIASEEVARLHGRVR 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D + + G GT +EG GTC ++ AV Sbjct: 88 DADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAVT 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI----AREV 185 HF+ + A P+FD +G L G + ++ L + ARE+ Sbjct: 148 VHKRDHFRAAFIDLTCSAAPVFDPQGELLGVLDVSAVQSPDDRRSQHLIRQMVAQSAREI 207 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 N S ++ ++S D + +WD G L +N A LR Sbjct: 208 ENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDADGRLLALNPAARHYLRQRLGQVPS 267 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 I E+ L A+ A + L+ G + L P Sbjct: 268 -HIGEVFDLDALHAAADQAPCLLR-----------------------GQAGELHVRLSAP 303 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + R+L + DP+ + + + PVL+ GE G GK + + Sbjct: 304 RAKARRLEREVPDDAAL--------DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFA 355 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFI---GGDRTD-NENGRLSRLELAHGGTLF 421 + +H S R P++A+NC ++ + E GG T G L+ A GGTLF Sbjct: 356 RQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLF 415 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + + LQ+ LL+V+ +G + L A R +D++VI T DLA LV F L Sbjct: 416 LDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDL 475 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 Y+ L +PPLR R AL+ L R+++ + A L+ WPGN Sbjct: 476 YFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVRIELGEAAPECLLGYRWPGNVR 534 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 +L V+ ++++DLP L E T + E++A+++A Sbjct: 535 QLRHVLRYACALCGGATLQLADLPAELRGEGRTPASACESGGGP------ERDALLDALV 588 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + LGI R TL+R++++HGI Sbjct: 589 RHRWKPMAAARELGISRATLYRRVRRHGI 617 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 126/434 (29%), Positives = 209/434 (48%), Gaps = 14/434 (3%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT-----ELLTLPAVLQQAI 262 +L+S+++GVI+ + ++N A +L L G + + ++++ I Sbjct: 43 ILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEKTI 102 Query: 263 KQAHPLKHVEATFESQHQ---FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGK 319 + P ++ E + +H+ + L + + + H V Q+ +L G+ Sbjct: 103 ESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKELKGR 162 Query: 320 VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPY 379 + F + + R L A+S VL+ GE G GK L++ AIH S R GP+ Sbjct: 163 --YAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPF 220 Query: 380 IAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 I VNC + L E G G T + + R ELA GGTLFL++I ++ +Q L Sbjct: 221 IKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKL 280 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+++ R+ + + +DV+VIA T DL ++ F R LYY L + +PPLR Sbjct: 281 LRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLR 340 Query: 497 MRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 RR IP L+++ L F + + +A L++ ++PGN EL ++IE+ L S Sbjct: 341 ERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLST 400 Query: 556 NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 I V +LP L + LS S + +E I A + T G + + + LLG Sbjct: 401 GRTIGVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAKLLG 460 Query: 616 IGRTTLWRKMKQHG 629 IGR+TLWRK+++ G Sbjct: 461 IGRSTLWRKLREMG 474 >UniRef50_A5G298 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G298_ACICJ Length = 668 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 132/642 (20%), Positives = 241/642 (37%), Gaps = 38/642 (5%) Query: 16 IATSWERCNKLMKRETWNVPH--QAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA---- 69 I +W RC + P G I LG+ + ++ Sbjct: 33 IEAAWRRCRDDYRLNPEAPPAAVHVGGAALRQIREEHALFERLGRVEMHRLLGQISQQVA 92 Query: 70 ----PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 L + D +L D ++ A G E G + Sbjct: 93 QSATASRYVLMLTDADGTVLDVFTDAANAERARAANMMPGYMWDEQHAGVNGPGTSLHDR 152 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC----PVEQTTAADLPLTLAI 181 ++ ++H+ A P++ + GRL G I C + L Sbjct: 153 RSRVVHREEHYFTRNSRMTCSAAPIWGANGRLLGAIDATCLDCDDSRAAQVPTIALVSMS 212 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA- 240 AR + L T+S ++ L+ D +++ D G ++ ++ +L Sbjct: 213 ARIIEQLHFTNSFRDCMIMRFHERPELVGLPYDSLLAVDSDGLIRAVDNSVPSMLGAAGY 272 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 GR++ E+ + + + + + ++ P +T+ + Sbjct: 273 NTLVGRSVAEVFD---ISLDRLLEHAETQPFAIWPIAHGNDRHGYASVWPAKQTRARARA 329 Query: 301 LLLHP---VEQMRQLMTSQLGKVSHTFAHMP---QDDPQTRRLIHFGRQAARSSFPVLLC 354 ++ VE+ +++ + + D + + +LL Sbjct: 330 VVSARNALVERAPLRPPAEMRQRKPEPRELVALAGADRAMAHNVWRAERVMNRDINILLL 389 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLS 410 GE G GK ++AIH S R A P++A++C + + E G + T G Sbjct: 390 GETGTGKDTFARAIHRASNRHAAPFVAMSCAAIPEQLIESELFGYETGAFTGARPGGMRG 449 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 + AHGGTLFL++I + + +Q+ LL+++++ I L + P+D+KVI+ T DL Sbjct: 450 KAVAAHGGTLFLDEIGDMPLSIQARLLRLLEEKEIVPLGSSTPTPVDIKVISATHRDLEA 509 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMR--RGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 +V + F LYY L+ +T+P LR R R L+ + + I A+ Sbjct: 510 MVARGEFRMDLYYRLNGLSLTMPALRQRSDRQD---LIETLCAEESE--GASISITPAAM 564 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L+ WPGN EL + + ++ GRI V LP + T L+ Sbjct: 565 QALIEHDWPGNIRELRNTLRTALAFAEAGRIEVHHLPHMIVR---TMPAHGPVPPQPLAE 621 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E+E I+ A + RI ++ LGI R TL+RK+ ++G+ Sbjct: 622 EDPERERIVAALERHHWRIAATASSLGISRNTLYRKLHRYGL 663 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 119/503 (23%), Positives = 223/503 (44%), Gaps = 21/503 (4%) Query: 149 PLFDSKGRLTGTIALACPVE-------QTTAADLPLTLAIAREVGNLLLTDSLLAETNRH 201 P+ + + GTI+L + T + + +A + + ++ ++AE Sbjct: 95 PI-TVESEVIGTISLIAFDVAQKETLCKNTDSLIEFIGRMADLISSKVVEQEIMAERTVL 153 Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 N+L A+++++ +GV++ D G + N A R+ G+ L L Sbjct: 154 ANRLEAVVDAVGEGVMAVDRDGCITHFNRSAERIFGAKKEQVIGKDSKILFPSLP-LSSV 212 Query: 262 IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGK 319 ++ E + + + + T KPI G + ++ ++L + Sbjct: 213 LQDGIGFNSKEVFINYEGRKLHLLSTAKPIKVKNGQVAGVVASFQDFKETQKLAYEIMNT 272 Query: 320 VSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 F + + ++ + S+ VL+ GE G GK + ++AIH+ P Sbjct: 273 HEMIGFDDIVGASKPLLEVKAKAKKISASNSNVLIVGESGTGKEIFARAIHSAGPYGHKP 332 Query: 379 YIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++A+NC + L E G G + G+ + ELA+GGT+FL+++ +++ LQ+ Sbjct: 333 FVAINCGAMPENLLEIELFGYVEGAFSGARRGGKPGKFELANGGTIFLDEVGNMSLYLQT 392 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+K+ VI R+ R +P+++++IA T +DL V++N F LYY L + IPP Sbjct: 393 KLLRVLKERVIERVGGTRPVPVEIRIIAATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPP 452 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R+ IP L++ ++ + +K D+A+ + WPGN EL +E Sbjct: 453 LRTRQEDIPLLLDFYMKRFNRLLGKDIKGFTDEAMEACIKYPWPGNVRELVYAVEYAVNL 512 Query: 554 SDNGRIRVSDLPEHLFT-EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR---IQE 609 + I LP + + L A++EKEAI A + G + Sbjct: 513 EEEPLISPESLPPAIREGARKRTRDGIAGGGQLLQLAQLEKEAITAALEQYGWSDEGKTK 572 Query: 610 MSALLGIGRTTLWRKMKQHGIDA 632 + LGI R T++RK+++ + Sbjct: 573 AARALGISRATIYRKIQKFKLSP 595 >UniRef50_B1J8J4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pseudomonas putida W619 RepID=B1J8J4_PSEPW Length = 637 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 143/641 (22%), Positives = 250/641 (39%), Gaps = 46/641 (7%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRET--WNVPHQAQGVTFASIYRRKKAMLTLGQAALE 62 F G P+IA SW R + +V + + +A L + + Sbjct: 21 FAERGLIPEPVIAESWYRSINQHHLDPELRHVDNILSATEIRQHQAQHEAYLAIASQGVS 80 Query: 63 DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 + A+ + D L P Q+ + G G E I GT + A Sbjct: 81 GLARRVVDAGFAVLLSDADGITLDAR-LPADPQRYTRSGLIVGARWDESIAGTNGIGTAL 139 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI- 181 GQA+ +HF + +P+FD+ +L G + C LTL + Sbjct: 140 ACGQALTIHRQEHFLAANARLSCSVSPIFDAHNQLLGCLNATCLYNDGPKQAQHLTLQLV 199 Query: 182 ---AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA-----A 233 AR + N + L + + + +++ DE G + N A Sbjct: 200 TLYARLIENSHFRERYRDRLTLALKPRDEFSDLAAEQLLALDEGGRVIGANRAAFLAHTG 259 Query: 234 RVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 ++L I +LL L + + ++Q +D + + Sbjct: 260 KLLGAPVEQLLHADIDQLLDL---------TRGGARGTQLRGQAQPLLLDVGLRVP---- 306 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 + L +R + D Q ++ + R+ +LL Sbjct: 307 ---AGYRL-------LRATPPMPARAGHPGLEQLAGQDVQLQQDVRRLRKVLDKDIAILL 356 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRL 409 GE G GK ++A+H S+R A P++A+NC ++ + E G T G Sbjct: 357 NGETGTGKEAFARALHQVSQRHAKPFVALNCAAIPESLIESELFGYRAGSFTGASRKGMK 416 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 +LE A+GGTLFL++I + LQ+ LL+V+ + + L A + +D++VI+ T DL Sbjct: 417 GKLEQANGGTLFLDEIGDMPAHLQTRLLRVLAERELVPLGAETPVLLDIQVISATHQDLQ 476 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 ++ + RF LYY L + +P LR R L++ L L + L++ +A Sbjct: 477 AMIGEKRFREDLYYRLCGMRMRLPALRER-SDRRELIDALLSGLSA--GSGLRLSAEAHR 533 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 L+ AWPGN +L + + ++ G I ++DLP L A A + Sbjct: 534 CLLGHAWPGNVRQLLNALRQAVALAEGGVIELADLPRELLDSAA----PAQPAALEQQVE 589 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +++ ++ + + + LGI R+TL+RKMK++GI Sbjct: 590 DLQMRHLLEVLKRERWNMSAAAQALGISRSTLYRKMKRYGI 630 >UniRef50_C5CW42 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C5CW42_VARPS Length = 648 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 153/633 (24%), Positives = 259/633 (40%), Gaps = 31/633 (4%) Query: 13 SPLIATSWERC-NKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + L+ SW RC + T P + ++ + L +A +ED + +A Sbjct: 26 ASLVHKSWARCVREHGLDPTKPSPARILPAQEVRAHQQQLEHFLRAARAGMEDIYRRVAD 85 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D + G+P QL G G E GTC + I Q + Sbjct: 86 LGYMVLLTDAEGITVDYIGNPAWDDQLRRAGLYLGADWNEAHAGTCGVGTCLIERQPMTC 145 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA---CPVEQTTAADLPLTLAI-AREVG 186 +HF PLFD GRLT + ++ P + + + ++I AR + Sbjct: 146 HQTEHFDATHIALTCTTAPLFDHSGRLTAILDVSALRSPEARESQHLVRHLVSIYARMIE 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + S L L++ + ++++DE G + N+ A + L A GR Sbjct: 206 DADFLRSFRGHWILRLGTAYGLVDVAGELMLAFDEGGTVVGANSGARQAL---AENPLGR 262 Query: 247 AITELLTLP-AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 +++LL +P + + T L P + + P Sbjct: 263 EVSQLLHIPMDAIWRLGNGGASAMPFAHTVLLPGGGEYHASLLAPRVRRAAAPAPDIARP 322 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 +++ A + DDP ++L+ ++ VL+ GE G GK +L+ Sbjct: 323 SDRL------------PPLARIAGDDPAMQQLLAQAQRLVDRGIHVLVEGETGSGKEVLA 370 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLF 421 +A+H S RAA P++AVNC D+ + E G T G + A GTLF Sbjct: 371 RAMHGASRRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAKGMKGLIAQADRGTLF 430 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + + LQ+ LL+V+ +G + L A +D+ V+A T +L+ LV RF L Sbjct: 431 LDEIGDMPMALQTRLLRVLSEGEVLPLGAESPQRVDLAVVAATHRNLSALVAAGRFREDL 490 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY L + +PPLR R G L+ ++ D AL RL++ AWPGN Sbjct: 491 YYRLCGAVLKLPPLRAR-GDRRYLIEAMFNEEAAAMRPGARLSDAALQRLLAHAWPGNLR 549 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA---EVE-KEAII 597 EL +V+ +G + DL ++ A + +++ + A +E + + Sbjct: 550 ELRNVLRLALALCADGTVGAQDLQLPAPSDSAAAAAVPSAPASAEAGAGDGGLEGADELR 609 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 Q + +A LG+ R T++R MK+HGI Sbjct: 610 ALLQRHRWHVARAAAELGVCRATVYRHMKRHGI 642 >UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9N8_GEOUR Length = 653 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 137/640 (21%), Positives = 241/640 (37%), Gaps = 56/640 (8%) Query: 20 WERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILD 79 W RC + F ++ + L+ + L + D Sbjct: 45 WSRCKTIGVDPGMRDGIVIPEDEFRIAVAHSSFIIEKAEPILQKVSNLLVGVPGILILTD 104 Query: 80 ETACILSRNGDPQTL-QQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQ 138 IL GD + +G+ E + GT + A +AV +++HF + Sbjct: 105 NQGTILHIVGDSSVRMRAADESSLIEGSRWLESLAGTNGIGTAIAQKEAVHVFSNEHFCE 164 Query: 139 VLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAE 197 W+ ATP+ D + G + + + LT +++ + L L Sbjct: 165 GWHQWSCAATPILDPFTEEVLGVVDFTTFDKDYREDAVGLTYSLSGHIKAELRLQLELER 224 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 + + DG++ D G + + +D +L Sbjct: 225 MQLIHSYSDHSSRYPADGIVVLDRMGRVVRSSP------GIDPDEC------DLFQ---- 268 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQL 317 + ++ P + + I +++ + + + P+E S L Sbjct: 269 -RCRCEKEQPKMVQQVYLPGTEREIGSLLVI------HRKKPVTISVPIE-------SAL 314 Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 + TF + ++ + S VLL GE G GK +++ IH S+R AG Sbjct: 315 IRCVATFGEFVTASENLKLIMERISKVIPSDINVLLIGETGTGKEIVANYIHAHSKRHAG 374 Query: 378 PYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQ 433 P++AVNC +F G + T + GR E A GGTLFL+++ + +E+Q Sbjct: 375 PFVAVNCGAISKELFESKFFGYERGAFTGADPRGRKGVFECADGGTLFLDEVGEMPLEIQ 434 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 +ALL+V++ G R+ + + I + +++A T L+ + + F LYY L IP Sbjct: 435 AALLRVLETGRFNRVGSEKEIATNCRIVAATNRSLSHEITRGTFRADLYYRLGVATFDIP 494 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLAL 552 PLR R IP L+ + SL ++ I ++A+ L +WPGN E+ +VIE+ + Sbjct: 495 PLRERPEDIPVLIQRTMVSLCRKHDLPPSNISEEAMELLTGYSWPGNGREVRNVIESAMI 554 Query: 553 SSDNGRIRVSDLPEHLFTEQATDD-----------------VSATRLSTSLSFAEVEKEA 595 I V DLP ++ Q +T + + ++ E Sbjct: 555 -CGGSSISVQDLPMNIKYSQKLPQEAISVSGAHLTAAQGRSPDSTGYRINANISQREVHL 613 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 II + I LG+ R T +RK K HGI + Sbjct: 614 IITTLEKYK-DIALACEALGVSRATFYRKCKAHGITPSDY 652 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 132/474 (27%), Positives = 214/474 (45%), Gaps = 32/474 (6%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I E + D LL E +L +LES+ DG+ D G + ++N R++ Sbjct: 94 IMNEASEIHGVDKLLHENALMQERLQMILESVQDGICVVDRSGEVTYVNPSYLRIVHKTP 153 Query: 241 TASQGRAITELLTLP---AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQG 296 G+ + E AVL+ I + ++H + V + PI + + Sbjct: 154 EMVVGQNVFETAADGNRCAVLRSGIARIGSIRH-------KKDGTTIVANVNPIFVDGEI 206 Query: 297 TSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHF 340 + ++ + +++ LM + K + FA+ + ++ Sbjct: 207 AGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKTAQAFANYIGKSGKVVDVLAL 266 Query: 341 GRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD 400 +AA SS VL+ GE G GK ++++ IH S R GP+I VNC A L E G + Sbjct: 267 ASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFIRVNCGAIPGALLESELFGHE 326 Query: 401 ---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T +L + ELA+ GT+FL++I L LQ LL+V++Q R+ I +D Sbjct: 327 KGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLLRVLQQKEFDRVGGEETIHVD 386 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 V++IA T DL +V + F LYY L+ I +PPLR R IP LV + + + K Sbjct: 387 VRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRDRPDDIPLLVEHFIEKISKEN 446 Query: 518 STRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 ++ I DA+ + WPGN EL +VIE + D I + LP ++ + A + Sbjct: 447 KKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDTDLITAAMLPSYIKGDIAGRE 506 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 V + T L + E EK+ I NA + G + LL I T+ K +++G+ Sbjct: 507 VQSLADDTVLPWEEYEKQIIANALRQ-GTSFNGAAKLLRISHKTVAAKARKYGL 559 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 132/533 (24%), Positives = 236/533 (44%), Gaps = 52/533 (9%) Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 ++ +T + F +P+F G L G + + +++ Sbjct: 66 ESSQTFTTEKFVVNKKTLLTNRSPIFKE-GELIGALGI------------------FQDI 106 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L LA+T ++L A++ES DG D +G IN+ R+ A G Sbjct: 107 SELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGAKAEEVVG 166 Query: 246 RAITEL----LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSF 299 R + EL +V + ++Q + + F + ++T P+ ++ G T Sbjct: 167 RHMKELEEEGFCSESVTLKVLEQKERVTLMHELFSGKK----VMVTGNPVFDSDGNITKV 222 Query: 300 ILLLHPV-------------EQMRQLMTSQLGKVSHTFAH--MPQDDPQTRRLIHFGRQA 344 + + + + + + +L ++ + +RL+ + Sbjct: 223 VTNVRDISELLELKDELEKTQALTRHYKEKLTEMEEKLGEGEIVAKSKVKKRLLAQAARV 282 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---R 401 A VL+ GE GVGK ++++ IH S R+ P+I +NC + L E G + Sbjct: 283 AAFDSTVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLESELFGHEPGSF 342 Query: 402 TDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T +NG+ + E+A+GGTL L++I L+ +LQ LL+ ++ ITR+ + +DVK+ Sbjct: 343 TGASKNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIGGVKPRQLDVKI 402 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 IA T DL +V Q F LYY L + IPPLR R IP L+ + +R +++ Sbjct: 403 IACTNRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHYIRKYNEKYGVN 462 Query: 521 LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT 580 + AL LVS WPGN EL ++IE L + I SDLP+ + Sbjct: 463 KGLSSSALEELVSYNWPGNVRELENMIERLVIMVPENLIETSDLPQQIKESNVK---ILE 519 Query: 581 RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 LS + +++EK + A + + +E + +LG+ ++T+ RK+ ++G++ Sbjct: 520 NLSLPDAVSKLEKRMLQKAMEQSN-NTREAAQILGVAQSTVVRKLDKYGLNYK 571 Score = 69.4 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 TN + L +L+S+ +G+I+ +++G + N A+ +L + G I E++ Sbjct: 2 TNLQNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIREIIP-ETG 60 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS- 315 L + ++ + + + + PI E + + + + ++ + Sbjct: 61 LFKVLESSQTFTTEKFVVNKK----TLLTNRSPIFKEGELIGALGIFQDISELEHISQEL 116 Query: 316 -QLGKVSHTFAHMPQDD 331 + ++ + + Sbjct: 117 AKTKAINDELRAIIESS 133 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 122/471 (25%), Positives = 225/471 (47%), Gaps = 29/471 (6%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 ++L ++ ++ + + + VI DE+G ++ IN A +L++ + GR E Sbjct: 1 MSTILKNFENVVDVVDRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVE 60 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI-----LLLHP 305 + + +K + F + DAV+ PI + + +L Sbjct: 61 V-DHNSKWPVVLKSGEFDIAKKHKFARTGE--DAVVHRIPIYDYDSGEIVGGFGMVLFQN 117 Query: 306 VEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 ++++R L Q+ +++ ++ + ++AAR+ Sbjct: 118 LKELRDLADKNKLLEKKLDHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDL 177 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-E 405 VL+ GE GVGK + +QAIHNES R+ P+I VNC + L E G G T + Sbjct: 178 NVLITGESGVGKEIFAQAIHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASK 237 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G+ + ELA GTLF ++I + ++Q+ LL+VI++G + RL ++ +DV++IA T Sbjct: 238 EGKPGKFELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATN 297 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 +L LV + F L+Y ++ + IPPL+ R+ I L + L ++ +I Sbjct: 298 KNLEELVATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGENKQISQ 357 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLST 584 +A+ L WPGN +L ++I+ LA++++ I SD+P L + Q ++ S Sbjct: 358 EAVEVLQKYDWPGNIRQLKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGL 417 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 + +VEK+ I ++ +++L I R+TL+RKMK++G+ G + Sbjct: 418 NEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKKYGLKEGIY 468 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 115/501 (22%), Positives = 213/501 (42%), Gaps = 31/501 (6%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSL-LAETNRHLNQLNALLESMDDGVISWDE 221 L A + +E+ + D + L +L +L+++ +G+I+ D+ Sbjct: 40 LIYLKLDFAPAMKGALESAVKEIPGVRGIDEISLLPQEEKEQKLRGILDTIGEGIIALDK 99 Query: 222 QGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF 281 G + IN A ++L L +GR I ++L+ + + + + E Sbjct: 100 SGIITMINPSAEKILNLS-ENIEGRDIRDILSAELPILKTLSAGEDYDNKEIFVTLPGGK 158 Query: 282 IDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIH 339 + + +PI G + + + ++R+L+ +F + + I Sbjct: 159 SHYLTSGRPIKNDDGNTVGAVAAIKDINEVRKLVHRITHPTMLSFDDIIAESSIMNETIS 218 Query: 340 FGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG 399 F ++ A VLL GE G GK L ++AIH ES R P++ +NC + + E G Sbjct: 219 FAKKIAHGDSTVLLTGESGTGKELFARAIHMESPRKDCPFVPLNCAAIPETLMESELFGY 278 Query: 400 D---RTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIP 455 + T + G + ELA+ GT+FL++I L +LQ LL+V+++ + R+ + I Sbjct: 279 EEGAFTGAKKGGKHGLFELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVRRIGGKEEIS 338 Query: 456 IDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEK 515 +D++VI T +L LV + F LYY L+ I +PPLR R+ I L N+ L + Sbjct: 339 VDIRVITATNHNLEKLVNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLANHILGQMRT 398 Query: 516 RFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL----------- 564 + ++ + L + +WPGN EL ++IE +++ I L Sbjct: 399 NHGGQYQLSPKSRELLKTYSWPGNVRELENIIERAVNLANDNIIEGEHLFFGQEDGFSNY 458 Query: 565 ---------PEHLFTEQATDDVSATRLSTSLS--FAEVEKEAIINAAQVTGGRIQEMSAL 613 + Q+ ++S S VEK+ + ++ + Sbjct: 459 EGEMENWEQNQQYQNGQSEAEISVNYKDKDFSQILQSVEKQILQKVLSEHA-SARKAAKQ 517 Query: 614 LGIGRTTLWRKMKQHGIDAGQ 634 LG+ TT+ K+K++G+ Q Sbjct: 518 LGVSHTTILNKIKKYGLQINQ 538 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 115/477 (24%), Positives = 218/477 (45%), Gaps = 22/477 (4%) Query: 173 ADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 + +A+ +++ L L + + L A++E+ +G++ D+Q N+ +N Sbjct: 228 HKVLGAVAVFKDITELEEVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFF 287 Query: 233 ARVLRLDATASQGRAITELLT---LPAVLQQAIKQAHPLKHVEAT--------FESQHQF 281 V+ + G+ I ++ LP L+ Q H++ E + + Sbjct: 288 LDVIGVKVQDVIGKKINDISPNSSLPQTLKSGKAQFGETWHLKGRDFIIMRVPIEREGKV 347 Query: 282 IDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHT---FAHMPQDDPQTRRLI 338 + A+ F + +E+ +LGK + F + + P+ ++ Sbjct: 348 VGALAKTLFKNMEIAKMFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPRMKKAK 407 Query: 339 HFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG 398 +A++++ +L+ GE G GK + S AIH S R+ GPYI VNC + L E G Sbjct: 408 SLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLESELFG 467 Query: 399 ---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 G T + G+ + ELA GT+FL++I +++ +Q+ LL+V+++ + RL I Sbjct: 468 YDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLGGTEPI 527 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 +DV++IA T DL +V +++F LYY L+ I +PPLR R+ I + + + Sbjct: 528 KVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGLIEKIN 587 Query: 515 KRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573 KR T ++ + +++ L + WPGN EL +++E + D I L E Sbjct: 588 KRLGTDIQGVRPESITHLCAYDWPGNIRELENILERAIVICDEAWILPKHLALPGVMETI 647 Query: 574 TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 T + + E+E + + G + + +LGI R+ L++K+ ++ I Sbjct: 648 T---LGAEQTLEYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKYNI 701 Score = 65.1 bits (158), Expect = 7e-09, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 61/152 (40%), Gaps = 9/152 (5%) Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 + NL L LL + + +++Q +E++ + V++ D QG + F N A ++L A Sbjct: 123 FKFHDNLFLLYQLLNDLDFYISQ---TIEAVHNAVVAIDAQGRIVFFNPSAEKLLGFHAE 179 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 G+ I ++ +A+ L+ + ++ + D L I+ + + Sbjct: 180 EVLGKPIKNFFP-DSLTFKALATGEELRGIPMSYGELNTKADF---LPIILGHKVLGAVA 235 Query: 302 LLHPVEQMRQLMTSQLGKVSH--TFAHMPQDD 331 + + ++ ++ T + ++ Sbjct: 236 VFKDITELEEVSHRLNSNEKLMATLEAVVENS 267 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 121/476 (25%), Positives = 208/476 (43%), Gaps = 29/476 (6%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 + + + ++L A N + +L A+++S DG+ D + N+ +NA R+ + Sbjct: 1 MKVPNAYDSCYRDENLYANFNELITELEAIIDSSYDGIFITDGKANVLRLNAAYERITGI 60 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES--QHQFIDAVITLKPIIETQG 296 A GR + +L+ + Q++ + T + + ++T P+ + +G Sbjct: 61 KAAEVVGRNMVDLVR-EGLYDQSVTLLVLEQRARVTIDQIVKRNNKHILVTGNPVFDKRG 119 Query: 297 TSFILL--LHPVEQMRQLMTSQLGKVSHTFA----------------HMPQDDPQTRRLI 338 F ++ + V + +L T + ++ Sbjct: 120 GIFRVVTNVRDVTDLNRLQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVV 179 Query: 339 HFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG 398 + A VL+ GE G GK L ++ IH P+I +NC + L E G Sbjct: 180 ELATKVADVDSTVLITGESGTGKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFG 239 Query: 399 ---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 G T + G+ ELA GGTLFL++I + LQ LL+VI++ + R+ + Sbjct: 240 YDGGAFTGAKREGKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQK 299 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 ++V++IA T DLA +V+Q F LYY L + IPPLR R+ IP LV + L Sbjct: 300 SVNVRIIAATNRDLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFN 359 Query: 515 KRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT 574 K+F I D + RL +WPGN +L ++IE L +++ I LP+ + A Sbjct: 360 KKFGFNKVILPDVIDRLTEYSWPGNVRQLENIIERLVVTTPGNEITADMLPQQV---NAR 416 Query: 575 DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + T + A EK + + G +++ +LGI RTT RK ++G+ Sbjct: 417 IPLPKTGTKLKEAVAATEKYLLTETFRQY-GNWNKVADVLGIDRTTACRKAVKYGL 471 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 150/594 (25%), Positives = 257/594 (43%), Gaps = 71/594 (11%) Query: 80 ETACILSRNGDPQTLQQLSALGFN-------DGTYCA-EGIIGTCA----LSLAAISGQA 127 A ++SR+ P+ ++L A+G DG +C G IG A LS A + ++ Sbjct: 13 GRAMVVSRDIAPEEARRLIAVGGYAALVTNVDGKWCYLAGKIGEAADGAELSWAPLVARS 72 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + +A + GT+A A PV ++P+ + + Sbjct: 73 IDFLAQELA-------------------EAVGTLA-AAPVLILAQNNVPVGIYTPQ---- 108 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 +L L + R L A+ + + + + D G + N +A ++ + G Sbjct: 109 -ILICGLWEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHP 167 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPV 306 I E + ++ + + + + +I PI + I + Sbjct: 168 IEEFFS-NLIITAVLASSQAISDK---YHQPKPGAHVLINAAPICCDGSIIGSIAAERDI 223 Query: 307 EQMRQLMT----------------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 ++ L ++ FA + + R+ I R+ A SS P Sbjct: 224 TEIVNLTQQLCATNAKVMSLKREIKEINAQPDPFAAICGHNTVLRQEIATARKIAISSVP 283 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-EN 406 VL+ GE G GK + ++AIH S R GP++ VNC EF G G T + Sbjct: 284 VLIRGESGTGKEVFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKK 342 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ ELAHGGTLFL++I L E+Q LL+V++ R+ R + +DV++IA T Sbjct: 343 GKPGLFELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHR 402 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDD 525 +L ++EQ F LYY L+ + +PPLR RR IP LV+ ++ + K++ Sbjct: 403 NLEAMIEQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEP 462 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT-----EQATDDVSAT 580 + +A + WPGN ELY+V+E L + +D G ++ +DLP L + + +A Sbjct: 463 EVMAVFLEYDWPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQ 522 Query: 581 RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 L + +E+ I+ A G R + + LGI R+TL+ KM++ G++ + Sbjct: 523 NLPA--ATERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLNTSE 574 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 126/498 (25%), Positives = 227/498 (45%), Gaps = 41/498 (8%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + L+ L I V N L E LN ++E+ DG+I D Sbjct: 88 LILSIIPFGENTNTQGSML-IFSNVTNYSQLIHKLEEERDSKEILNTVIETAYDGMIIID 146 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVLQQAIKQAHPLKHVEATFES 277 +QG + I+ L + + GR + E++ +P VL+ ++ L ++ ++ Sbjct: 147 KQGIVTMISNAYTEFLGIKREDAIGRHVNEVIENTRMPIVLETGKEEVAQLHKIKGSY-- 204 Query: 278 QHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTS----------------QLG 318 + + PI++ G +L V+++ L + Sbjct: 205 ------MIASRIPIVKNGEIIGVVGKVLFRNVKELNSLYKRISVIEKELATYKSRFREFN 258 Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 K +++ ++ + +AA ++ VL+ GE G GK + + AIH+ES R GP Sbjct: 259 KANYSLENIIGESEPIVMAKAIVEKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGP 318 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++ VNC L E G + T + G++ + E+A+ GT+FL++I + + +Q Sbjct: 319 FVKVNCAAIPSDLLESELFGYEAGAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQV 378 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+VI++ + ++ I++++IA T +L LVE+ +F LYY L+ I IPP Sbjct: 379 KLLRVIQEREVEKVGGVASKKINIRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPP 438 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLA-L 552 LR R I + N+ ++ L ++K I +A L W GN EL +++E + Sbjct: 439 LRERGNDIILISNHLIKKLSVDLDKKVKGISKEAEQYLKIYEWKGNVRELENILERAINI 498 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA 612 ++ I+V DLP+ + ++ VS AE EK AII A + G + + Sbjct: 499 MENSEIIQVKDLPKEITGKK----VSMVPKKLQDILAESEKNAIILALRAADGNKSKAAK 554 Query: 613 LLGIGRTTLWRKMKQHGI 630 +L IGRT+L+ K++++ I Sbjct: 555 ILDIGRTSLYEKIEKYKI 572 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 76/199 (38%), Gaps = 36/199 (18%) Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 ++++L +L++M + +I D + FIN A+ + +D+ G+ I E++ P + Sbjct: 8 KNYISKLEVILDNMFNAIIVVDSNDKILFINEAASILFDIDSKGGLGKNINEIMPDPDIE 67 Query: 259 ------QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR-- 310 ++ IK+ + + + +I + T++ L+H +E+ R Sbjct: 68 YFLSTKKEEIKRPIVVNELNLILSIIPFGENTNTQGSMLIFSNVTNYSQLIHKLEEERDS 127 Query: 311 --------------------QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 Q + + + F + ++D R + + P Sbjct: 128 KEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIE---NTRMP 184 Query: 351 VLLCGEEGVGKALLSQAIH 369 ++L GK ++Q +H Sbjct: 185 IVLE----TGKEEVAQ-LH 198 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 122/506 (24%), Positives = 214/506 (42%), Gaps = 53/506 (10%) Query: 136 FKQVLWNWAFCAT-------PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 F+ + C+ P+F G G I E+ + Sbjct: 67 FEDFNITLSCCSKKVCYSFKPVF-ENGEFAGII---------------------EEIRDS 104 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 + + + + +L+S+ D ++ D QG + N A +L +G + Sbjct: 105 TKVNQYIEIIKKEKEFSHLILDSVIDAIVVVDNQGKIINYNQNAKNLL-CREVDIKGMNL 163 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 + ++++ +K+ + + I + +G+ F + P Sbjct: 164 S------LLIKKDLKELPSSREDIIIETPAYGKIKVSAVFTRLKSGEGSIFSFYVVPDCM 217 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + Q S + + ++ + A ++ VLL GE G GK +L++ I Sbjct: 218 LSQEAASNKSR-------LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYI 270 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKI 425 HN+S R P++ +NC D L E G T + ++ELA GGTLFL++I Sbjct: 271 HNQSSRRDKPFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEI 330 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L LQS LL +I++ RL + +DV++IA T DL+ LV++ +F LYY L Sbjct: 331 GELPTYLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRL 390 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 I +P LR R+ IP L+N + K+++ +K I +A+ L++ +PGN EL Sbjct: 391 KVISIKVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELE 450 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 ++IE + + I VSDLP+ + L EK+ I+ + Sbjct: 451 NIIERAVILAKGKFIEVSDLPDEIVYNTKI------LTQNDLDEEIDEKQKILRVLESVN 504 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 + + +L I R TLWRK+K++G+ Sbjct: 505 WNKSKAAKILNIDRVTLWRKLKKYGL 530 Score = 47.0 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 7/127 (5%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDA-TASQGRAITELL-TLPAVLQQAIKQA 265 LL ++ GVI D+ ++++N A +L + + + + ++ P Sbjct: 5 LLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKEGQSCKNLKMFDICKKCPIDYYNKHSTF 64 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMRQLMTSQLGKVSHTF 324 + T + + + KP+ E + I + ++ Q + ++ K F Sbjct: 65 PEFEDFNITLSCCSKKVCY--SFKPVFENGEFAGIIEEIRDSTKVNQYI--EIIKKEKEF 120 Query: 325 AHMPQDD 331 +H+ D Sbjct: 121 SHLILDS 127 >UniRef50_A9BZJ5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=10 Tax=cellular organisms RepID=A9BZJ5_DELAS Length = 673 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 150/646 (23%), Positives = 258/646 (39%), Gaps = 46/646 (7%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALE 62 ++N G+ + SW RC + + + H + + ++ + + ALE Sbjct: 44 YSNRGQERDRAVLRSWRRCIDSHRLDPAHTSEAHIVTDGQLRAHREESEPLIHIARHALE 103 Query: 63 DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 ++ + + L + D + G L G G E GT A+ Sbjct: 104 RLYQQLKGLDYVLLLADRHGVAVDFLGHEADAGDLRRAGLYLGAQWREDHSGTSAVGACL 163 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA---CPVEQTTAA-DLPLT 178 +G+A+ HF + A P++D G L + L+ P E+ + L L Sbjct: 164 ETGEALTVHQSDHFDFTHTGLSCTAAPIYDMHGELAAVLDLSLLRSPAERASQNLALNLV 223 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +A AR V L + L Q L+ D IS D +G ++ + AR+L Sbjct: 224 VAAARRVEQANLMAQSGQDWVVRLAQSPDFLDVDPDASISVDARGRIRAMTHAGARLLVA 283 Query: 239 -------DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 G+ + + +++ P + + D I Sbjct: 284 AAQLDWRQRHKLIGQPLERFFDVDLRHLPELRRHRPAQERII------RARDGSILFAHA 337 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 +E Q P ++R + + D + + L+ + A + P+ Sbjct: 338 MEPQ--------RPTRRLRAQAMPAQPPLPAALQALDTGDAKLQTLLRKAARLAPQTLPI 389 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD----RTDNENG 407 L+ GE G GK L++A+H S R+ G ++A+NC +A L E G G Sbjct: 390 LVQGETGAGKEYLARALHASSGRS-GAFVAINCAAIPEALLESELFGYLPGTWTGGASKG 448 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R + AH GTLFL++I + + LQ+ LL+V+ + IT L AR + V+VI+ + Sbjct: 449 REGLIAAAHEGTLFLDEIGDMPLALQAKLLRVLSESEITPLGARAPRAVSVRVISASHRP 508 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 LA LV + F L Y L+A E+ +P LR R + A+ + L +L + L + D A Sbjct: 509 LAELVRRGSFREDLLYRLNAAELQLPALRQR-SDLQAIADQMLATL----GSHLHLGDAA 563 Query: 528 LARLVSCAWPGNDFELYSVIENLALSS---DNGRIRVSDLPEHLFTEQATDDVSATRLST 584 A L + AWPGN EL++ + A +G I LP+ L A+ S Sbjct: 564 RALLAAHAWPGNLRELHNALRYAAALCGNDGDGSIEPDHLPDALHNAPPCTAALASNTSE 623 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +A+ G + E + LG+ R+T+ R+++Q + Sbjct: 624 PAA------QALEQMLAQCQGNVSEAARQLGVSRSTIHRRIQQLQL 663 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 121/474 (25%), Positives = 217/474 (45%), Gaps = 30/474 (6%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L + + + A + +L+ +++ + D+ + N +A + + A Sbjct: 113 LEPLSVANEIYAGFVKLRCFFETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKIL 172 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE-TQGTSFILLL 303 I + + + H K V + + +I P+ + + + + Sbjct: 173 SGRIEDFFSN----LRISNCMHEKKEVRGLYHQPCEGAHVLINSAPVFDSGKVIGGLAVE 228 Query: 304 HPVEQMRQLMTSQLGKVSH-----------------TFAHMPQDDPQTRRLIHFGRQAAR 346 + ++ QL +L K S F + ++LI FG++ + Sbjct: 229 KDITEIVQL-NQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISV 287 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD 403 + VLL GE G GK LL++AIH S R P+I VNC + E G + T Sbjct: 288 TEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTG 347 Query: 404 N-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 G+ ELA+GGTLFL+++ + +E+Q+ LL+V+++G R+ + + ++V+V+A Sbjct: 348 ADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLA 407 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL- 521 T +L ++ + +F LYY L+ + IPPLR RR IP LV+ ++ +++ + Sbjct: 408 ATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIK 467 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV-SAT 580 KI+ + + WPGN EL + +E L + +D I + LPE+L V S Sbjct: 468 KIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPV 527 Query: 581 RLSTSLSFA-EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 ++ A E EK+ I+ Q G E + +LGI R+TL+ K++Q GI A Sbjct: 528 SQGKLMNVAVEAEKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 127/459 (27%), Positives = 219/459 (47%), Gaps = 17/459 (3%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AI++ + + Q A+L+ +G+++ D++G + +N A ++L L Sbjct: 170 AISQAIREAREVAMVRRRERARAEQFKAILDFAYEGIVATDQEGRITLVNPAAEKILGLA 229 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 A GR E+L L Q ++ + + A + I + Sbjct: 230 AHRVVGRPAREVLP-GVPLNQVLQSG---QKRLGELHRAGNTLVAENIIPVIAGRETVGA 285 Query: 300 ILLLHPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + V + RQ + + +TF + P ++I RQ A + VL Sbjct: 286 VATFQDVSHLQAVEARARQELYLKGHVARYTFEDIVTQSPVMAKIIERARQFAAAEATVL 345 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGR 408 + GE G GK +++Q+IHN S R GP++AVNC + L E G + T + G+ Sbjct: 346 INGETGTGKEMVAQSIHNASRRRNGPFVAVNCAAVPENLLESELFGYEEGAFTGARKGGK 405 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 ELAHGGTLFL++I L++ LQ+ LL+V++Q I R+ R++P+DV++IA T +L Sbjct: 406 KGLFELAHGGTLFLDEIGELSLNLQARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRNL 465 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDA 527 + ++ F R LYY L+ +I +PPLR R +P L+ + + +R ++ Sbjct: 466 KDAIARDAFRRDLYYRLNVLQINLPPLRERPEDLPLLIKALVEKISRRAGRLPPIFSEEI 525 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 +AR+ + +WPGN EL +++E L + + DL + + +L+ + Sbjct: 526 IARMQAYSWPGNVRELENILERLVVLRSGEEVEAGDL-DEILEPAENQPQPVLQLALRGT 584 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 AE+E E I +TG +E LG+ +TTLWR++K Sbjct: 585 LAEMEGEIIRRTLALTGNNKEETCRRLGLSKTTLWRRLK 623 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 125/501 (24%), Positives = 218/501 (43%), Gaps = 30/501 (5%) Query: 152 DSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLES 211 D + + + + L + + + L ++NA++E+ Sbjct: 82 DLEREILAFLPELRYHALVCRNNQGDILGV---LSYDQVFHDLALRVCETEARINAVVET 138 Query: 212 MDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHV 271 +D+ V D + N++A + + A G+ I T V + + + Sbjct: 139 VDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTNLVVT----RVNKEWQEI 194 Query: 272 EATFESQHQFIDAVITLKPII-----------ETQGTSFILLLHPVEQMRQLMTS----- 315 + +I P+ E T + L + Q + Sbjct: 195 RSLHHQPVPGTHVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLNQASSQVQRLEKEI 254 Query: 316 -QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + + FA + + LI+ R+AA +S VLL GE G GK L ++AIH S R Sbjct: 255 DKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGKELFAKAIHEASPR 314 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAV 430 + +NC + E G + T + G++ E+A GGTLFL++I L + Sbjct: 315 IDKKFCVINCAAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADGGTLFLDEISELPL 374 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 ++Q LL+V++ GV R+ I +DV++IA T L ++ F LYY L+ + Sbjct: 375 DMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTFREDLYYRLNVVSL 434 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIEN 549 IPPLR RR IP LV L+ + ++ ++ K++ +A ++ +WPGN +L ++IE Sbjct: 435 EIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSWPGNIRQLKNIIER 494 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 + + ++ + S +PE L D +AT S++ + E+E II + G E Sbjct: 495 MVILTEGDTVLESAIPESLKLSSRQDQATATIGLASVT-EQTERELIIRTLKQVNGNRSE 553 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + +LGI R+TL+ KM Q GI Sbjct: 554 AARMLGIPRSTLYYKMHQLGI 574 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 117/486 (24%), Positives = 219/486 (45%), Gaps = 40/486 (8%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I ++ + + L+ N + +LE DG++ D G + N+ + + Sbjct: 101 IFEDISDSVKLKRELSNARSSANAMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISE 160 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GT 297 + G+ +TE++ + + ++ P E + + + V T PI E G Sbjct: 161 QEALGKHVTEVIE-NTRMHKVLETGKP----EIGEIQKIKGCEMVATRVPIYEEGEIVGV 215 Query: 298 SFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFG 341 +L +++++ L +L + F ++ + Sbjct: 216 LGKVLFRDIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMA 275 Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD- 400 + A++S VL+ GE G GK L + AIH+ S R G +I VNC + L E G + Sbjct: 276 KIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCAAIPENLLEAELFGYEK 335 Query: 401 --RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T + G+ + ELA+GGT+FL++I + ++Q LL+ +++ + R+ + R+I +D Sbjct: 336 GAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLD 395 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 V++IA+T +L L+ Q++F LYY L+ F I +PPLR + + L+N ++ L Sbjct: 396 VRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEM 455 Query: 518 STRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT------ 570 + + +A L S WPGN EL +V+E + I +P++L T Sbjct: 456 GLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEE 515 Query: 571 -----EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + +++ L E EK AI A + T ++ + LL I R+ L++K+ Sbjct: 516 QQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKL 575 Query: 626 KQHGID 631 +++ I Sbjct: 576 EEYNIS 581 Score = 50.1 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 12/140 (8%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ--QAI 262 ++L+ +++D +I DE ++ N +A + G I ++ +P L+ I Sbjct: 2 FDSLMNAINDALIVTDEHNKIECFNYKAEETFNISHNH-LGEKIEGIIFIPDDLKKSDTI 60 Query: 263 KQAHPLKHVEATFESQHQFIDAVITLKPIIETQ-GTSFILLLHPVEQMRQLMTSQLGKVS 321 + + + + ++P IE Q + + +L S Sbjct: 61 TEGKKESQRRINYYGKTLSVIKTPIIEPTIENQCHLGNYYIFEDISDSVKLKRELSNARS 120 Query: 322 HTFAHMPQDDPQTRRLIHFG 341 ++ Sbjct: 121 --------SANAMENVLEKA 132 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 125/458 (27%), Positives = 214/458 (46%), Gaps = 22/458 (4%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + E + L ++ LL + D V+ D +G + N+ A ++ G+ +TE Sbjct: 6 LERARQERLKLLREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGKHVTE 65 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPI-IETQGTSFILLLHPVEQ 308 + ++L Q IKQ P ++ S + ++ L P+ + Q IL L Sbjct: 66 FVQSASLL-QYIKQGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLTKPIL 124 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 +++ S + + P L + A+S VL+ GE G GK +L+Q+I Sbjct: 125 LQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVLAQSI 184 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTLFLEK 424 H S R GP++A+NC +A L E G + T + G + R ELA GGTLFL++ Sbjct: 185 HRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTLFLDE 244 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + LQ+ LL+V+++ I R+ + I +DV++IA T DL ++ N+F LY+ Sbjct: 245 IGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFREDLYFR 304 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFEL 543 L+ + +PPLR R+ + L+ + KR + AL ++ WPGN EL Sbjct: 305 LNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGNIREL 364 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLF----------TEQATDDVSATRLSTSL-SFAEVE 592 +++E + + +S LP + E+ + + + L SL EVE Sbjct: 365 ENMVEYIVNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKINEVE 424 Query: 593 KEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQ 627 ++ II A Q G ++ + LGI TL+RK+++ Sbjct: 425 EQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEK 462 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 118/511 (23%), Positives = 222/511 (43%), Gaps = 38/511 (7%) Query: 147 ATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLN 206 + P+ + +G++ G + A V +++ +L T L + Sbjct: 98 SVPVLNKEGKVIGLLCKAKMVTTLFRHS-------EQDLTDLEHTAKELETVKALNETFD 150 Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAH 266 +L + DG++ DE+G + +N A L L G+ I E+++ + A Sbjct: 151 TVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLS 210 Query: 267 PLKHVEATFESQHQFIDAVITLKPIIETQ------GTSFILLLHPVEQMRQLMT------ 314 V + +++ PII+ G + L +++ + + Sbjct: 211 QTSEVLTI-----RGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKV 265 Query: 315 -------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + M + PQ ++L A S+ VL+ GE G GK ++ A Sbjct: 266 TFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHA 325 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLE 423 IH S+R GP+I VNC ++ + E G G T +NG+ R+E A GGTLFL+ Sbjct: 326 IHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLD 385 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V++ I RL + I ++++++A T L+ + + F + LYY Sbjct: 386 EIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYY 445 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFE 542 L+ + +PPLR R I L + + + I +A+A L+ +WPGN E Sbjct: 446 RLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRE 505 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR--LSTSLSFAEVEKEAIINAA 600 L +V+E + +G I + LP + + + + ++E++ I A Sbjct: 506 LENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAAL 565 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + GG + + LL + R+ L+ K+ ++ ++ Sbjct: 566 EKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 223/476 (46%), Gaps = 23/476 (4%) Query: 169 QTTAADLPLTL------AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 P L IA+ + + +L+ DG+IS ++ Sbjct: 154 SAQKHHQPYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFRTVLDFAYDGIISVNQD 213 Query: 223 GNLQFINAQAARVLRLDATASQGRAITEL---LTLPAVLQQAIKQAHPLKHVEATFESQH 279 + N A R+ ++D A+ G+ IT++ L L VL + L V T + Sbjct: 214 QRITIFNPIAERLTKIDGAAAIGKKITDIWPELGLEKVLTTGRDELGQLLKVSGTRVLCN 273 Query: 280 QFIDAVITLKPIIETQGTSFILLLHPVE-QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLI 338 + + V+ KP+ + +E ++R+ + ++ + TF + D PQ R + Sbjct: 274 K-VPIVVNGKPVGAVATFQDAGNIQQMEARIRREIYARGHVATFTFEDIVGDSPQIRHTV 332 Query: 339 HFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG 398 H ++ A++ VL+ GE G GK + +Q+IHN S RA GP++A+NC L E G Sbjct: 333 HIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANGPFVAINCAALPSQILESELFG 392 Query: 399 ---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 G T + G+ ELAHGGT+FL++I + Q LL+V+++ + RL + R+I Sbjct: 393 YVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQGKLLRVLQEKKVMRLGSDRVI 452 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 P+DV+VIA T +L+ LV +N+F LYY L+ + +PPLR R I L Sbjct: 453 PVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLPPLRERGADIIRYAEFFLEKHS 512 Query: 515 KRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT 574 + RL AL RL WPGN EL + IE + ++ + + L + + Sbjct: 513 AAQNRRLAFTPAALERLARHPWPGNVRELQNTIERIVAVCRQPQVDAGLVAQMLEDDADS 572 Query: 575 DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ A+ EKE I A + G+ E + LLG+ R+TLWRKMK+ G+ Sbjct: 573 --------GIEVAAADSEKEQIRQALAIAKGKQGEAARLLGVSRSTLWRKMKKLGL 620 >UniRef50_D0LRM2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRM2_HALO1 Length = 650 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 151/634 (23%), Positives = 247/634 (38%), Gaps = 30/634 (4%) Query: 16 IATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 + W+R +L P A + R + +L G+ +E A + Sbjct: 31 VLEHWQRARELGALHDGPRPEDALDRGGLSERIERVEPVLIGGRGIIERVSAVAAGHDYT 90 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 L + DE+ ++ G +Q G +E GT A+ + V Sbjct: 91 LLVADESGVVVRSGGG--FREQAQRAQLLAGADWSERQRGTNAIGTVLAEERPVFVHGGA 148 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 H+ + P+ D+ G L I VE+ A +A A+ + +L + Sbjct: 149 HYARNYHGLVCYGAPVRDADGTLVAVIDATSSVERANPAVGFGVIAAAQALEEVLRVRAY 208 Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-----LDATASQGRAIT 249 L LE M V + + +NA A ++ LD G Sbjct: 209 SLAGATVTRALARSLERMSCPVALVEPPDRISRVNAAARQLFGGGGAQLDLATLLGVDFD 268 Query: 250 EL--LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 L V +A + L+ ES + I + +P+ + Sbjct: 269 TLAEFDGDPVELRAGDRRQTLRVRVEPIESGGRAIALLCFFEPVQGQAQPAPAR------ 322 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + F+ + +D TR+ + + + A S PV+L E G GK L++ Sbjct: 323 ----PRAPRPAPAETPFSALFAEDAATRQALAWAERIAPSDLPVMLLAETGAGKELVANG 378 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLE 423 IH S RA+GP++AVNC D+ L E G T E GR E A GGTLFL+ Sbjct: 379 IHRASARASGPFLAVNCGSIADSLLESELFGYAPHAFTGAERGGRSGYFEAASGGTLFLD 438 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 ++ + + +Q+ALL+V++ G R+ + DV+V+ T DL LVE +F LY+ Sbjct: 439 EVAEMPLAMQAALLRVLETGSYRRVGEVQQRHADVRVLCATCRDLPSLVEHGQFRSDLYF 498 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGNDF 541 L +T+PPLR R + +L ++ L R ++ A L WPGN Sbjct: 499 RLKGVTVTLPPLRAR-SDLLSLAHHLLAQAAMRSGQAPAPRLSPAAQELLRGHTWPGNVR 557 Query: 542 ELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL S +E + + + I LP L + + S A+V+ + Sbjct: 558 ELKSALEVALVLAGDAIEIAPEHLPPELRS--LDAAPAPADDPGEESLADVQGRLVRRVL 615 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 G + + LG+ R+TL+R M++HG+DA Sbjct: 616 GEVAGNVSLAAKRLGVARSTLYRMMRRHGVDADD 649 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 120/454 (26%), Positives = 211/454 (46%), Gaps = 26/454 (5%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 L+ L A+L + +D + +E+ + + N A R + + IT+ ++ Sbjct: 4 ELSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLM-- 61 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTS--- 315 +K + + V+ +PI + +G + + + Q+ +L + Sbjct: 62 VLKVLRTKARITDQYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVS 121 Query: 316 ------QLGKVSHT------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 +L + +T F+ + R I +AA++ L+ GE G GK + Sbjct: 122 TSIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEI 181 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGT 419 ++AIH S R GP+I VNC A E G + T + G+ ++E A GGT Sbjct: 182 CARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGT 241 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I L +++Q LL+V+++ VI R+ I+V+ IA T D+ ++++ F Sbjct: 242 LFLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRS 301 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 LYY L+ +IT+PPLR+R IP L L+ ++ ++ DAL+ L + WPG Sbjct: 302 DLYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPG 361 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE--VEKEAI 596 N EL +++E + + S+ I + L + SA S +L + +EK+ I Sbjct: 362 NVRELRNLMERMVILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENMEKQLI 421 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + GG + LGI R TL++K+K+ GI Sbjct: 422 EKALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 116/437 (26%), Positives = 213/437 (48%), Gaps = 14/437 (3%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVLQQ 260 A+L+S+++GV++ + ++N A +L+ + +++ VL + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 261 AIKQAHPLKHVEATFE---SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQL 317 ++ P++++E + + + + L + + + H + Q+ L Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVALKEELK 157 Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 G+ ++F + + + L A+S VL+ GE G GK L++ A+H S R G Sbjct: 158 GR--YSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREG 215 Query: 378 PYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 P++ +NC + L E G G T R R ELA GGTLFL++I ++ +Q Sbjct: 216 PFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQV 275 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ R+ + + +DV+VIA T DL +E+ F + LYY L +T+PP Sbjct: 276 KLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPP 335 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R+G +P L+ + + ++ + +A+ L++ +PGN EL ++IE+ AL Sbjct: 336 LRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALL 395 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 ++ RI + LP L Q+ + VEKE I A +GG + E++ Sbjct: 396 CNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVARK 455 Query: 614 LGIGRTTLWRKMKQHGI 630 L +GR+TLWR++K+ + Sbjct: 456 LSMGRSTLWRRLKEMKL 472 >UniRef50_A8VUU9 Alanine dehydrogenase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUU9_9BACI Length = 632 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 131/646 (20%), Positives = 240/646 (37%), Gaps = 61/646 (9%) Query: 8 DGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + I SW C + +L + L+ + Sbjct: 21 DETRLRKRIIESWTFCRSAGVDPYDGKGSTLLTFEELKEKKEHNQMLLEIALPYLQKLKK 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 L ++D +L+ G+P+T + + + F +G E +GT A+ A + + Sbjct: 81 LFKGSGSILLLIDPDGYVLNVTGEPETRRSANDINFVEGIRWTEEQVGTNAIGTAIRTCE 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQ-TTAADLPLTLAIAREV 185 + +HF + NW A P+ D GRL G + ++ V L A A + Sbjct: 141 PITVFGHEHFARASQNWVCSAAPIKDDHGRLLGVLDISSRVGTCEHVHTLGAVAASAYAM 200 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 + E + + D +I + + FI Sbjct: 201 EHEWQKRQKEDEFELISAAITG--QKATDPIILMNRDEEIVFI----------------- 241 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLK-PIIETQGTSFILLLH 304 A++ + + + +K P+ +G I Sbjct: 242 -------------DNALESLKEYRDTWISLKELEDATGCRTEMKLPVFSAKGGRIIGYQV 288 Query: 305 PVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 V+ + + K F + R ++ A++ PV L GE G GK + Sbjct: 289 SVQDTYANQSVVMQKRAPFHFEGITGTSSVFRNVLDQASCLAKADVPVHLSGETGTGKGM 348 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGT 419 +++A+H S RA GP+I +NC D+ +A E G G T ++G + A GGT Sbjct: 349 MAKALHRNSPRANGPFIDINCGAVPDSLIASELFGYAPGAFTGALKSGYKGKFLEADGGT 408 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL+++ L+ +Q +LL+V+ + + L +V++I T DL LV + F Sbjct: 409 LFLDEVAELSPAMQVSLLKVLDDQSFMPVGSNVLHTCNVRIITATNRDLMTLVHEGTFRE 468 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 L+Y L+AF + +P LR R IPA +R + + + L WPGN Sbjct: 469 DLFYRLYAFPLRLPSLRERSEDIPA----FVRQYQIQHEWPVVWTRQLLEEWQRFTWPGN 524 Query: 540 DFELYSVIENLALSSDNGRIRVS---------------DLPEHLFTEQATDDVSATRLST 584 +L ++ L + + D+P+ + Q ++ + + Sbjct: 525 IRQLMLSLDRLRIYCPDRLPDPDTIRTIIGSASGERTGDMPKDVL--QTSESRQSLGEAP 582 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++EK+ +++A Q GG G R+T +RK++++G+ Sbjct: 583 LSYAEQLEKQTLMDALQAAGGARGRALERSGWSRSTFYRKLRKYGL 628 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 112/454 (24%), Positives = 212/454 (46%), Gaps = 27/454 (5%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ-QAIK 263 L+ LL S+++ + + +G + + N A ++ + GR + E ++ + ++ Sbjct: 12 LHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVLE 71 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPV--------------E 307 P++ + + +I+ PI + + + E Sbjct: 72 NQQPVRDI---YHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSE 128 Query: 308 QMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 +++QL + F+++ ++ + +IH ++ A++ +L+ GE GVGK L +Q Sbjct: 129 ELQQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQ 188 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFL 422 AIH S R+ +I +NC +A E G + + G+ ++ELA GGTLFL Sbjct: 189 AIHEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFL 248 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 +++ L +++Q LL+ +++ I R+ + IDV++IA T L +V F L+ Sbjct: 249 DEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLF 308 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDF 541 Y L+ F IPPLR R I L ++ + +++ +A RL + +WPGN Sbjct: 309 YRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIR 368 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQA-TDDVSATRLSTSLSFAEVEKEAIINAA 600 EL + IE L + + I SD+ + L ++ ++ VS T LS + +EK I+ Sbjct: 369 ELRNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLTDERESLEKTRILQTL 428 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 Q T G + LG+ R L++K+K++ I + Sbjct: 429 QQTYGNKSITAKKLGMSRANLYKKIKKYRITFDK 462 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 140/563 (24%), Positives = 226/563 (40%), Gaps = 71/563 (12%) Query: 138 QVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAE 197 + A P + + + L + +A+ ++ L L E Sbjct: 192 SRMHIVAETGQPELGRRQMIGDAVILTNRTPIVVDGQVKGAVAVFEDISALEKVTHELHE 251 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 +L +LES+ DG+ D +G + ++N AR++ GR + L A Sbjct: 252 VKELKERLQLVLESVQDGICVVDREGCVTYVNPAYARIVNGRREDLIGRDVRNLSPRGAR 311 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE----TQGTSFILLLHPVEQMRQLM 313 +QA++ P V + + + PII T S + L V+ + + + Sbjct: 312 -RQALETGKP---VLGHLAQKDGDVTVIADAYPIIVDGEVTGVVSIVKTLTDVQTLAEKL 367 Query: 314 TSQLGKVSH-------------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + + FA + R + +AA VL+ GE G G Sbjct: 368 NRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVRDALAMAEKAAEGPATVLIRGESGTG 427 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHG 417 K L+++ IH R+ GP+I VNC + L E G + T +L + ELAH Sbjct: 428 KELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHEKGAFTGAIKRKLGKFELAHK 487 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L +Q+ LL+V+++ I+R+ +DVK+IA T DL LV + RF Sbjct: 488 GTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDVKIIAATNQDLERLVAEGRF 547 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY L+ I +PPLR R+ IP LV + L+ + L+ I DAL L+ +W Sbjct: 548 REDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQGKALRGIHSDALEALMHYSW 607 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS----------- 585 PGN EL ++IE + SD I SDLP +L A ++ L Sbjct: 608 PGNVRELANLIERVVTLSDGPWITDSDLPTYLRERAAEENHEGRPLEERPAGGRYGAGER 667 Query: 586 ----------------------------------LSFAEVEKEAIINAAQVTGGRIQEMS 611 L++ E++ I A + G + Sbjct: 668 GYNGREHKIGRSVGGISGSLFRENRWEEQGDAPLLTWEAYEQQIITLALRRH-GSFNAAA 726 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQ 634 LG+ T+ K +++GID + Sbjct: 727 KALGLTHKTVAAKARKYGIDKNE 749 Score = 55.1 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 + SM DG+I D + N A R++ + A+ GR ++ + + + P Sbjct: 145 VFASMADGLIVTDAHDVVTVFNPAAERIMGMRASDVIGRKAKAVI-AGSRMHIVAETGQP 203 Query: 268 LKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQLGKVSH 322 + PI ++ Q + + + + + +T +L +V Sbjct: 204 ELGRRQMIGDAV----ILTNRTPIVVDGQVKGAVAVFEDISALEK-VTHELHEVKE 254 >UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7H4_VIBME Length = 629 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 196/627 (31%), Positives = 320/627 (51%), Gaps = 31/627 (4%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 +G + W++ ++ + + W P +G T + ++ +L Q L+ E + Sbjct: 21 KGQQTELYQQWQQASQCCQAKAWQPPKNLRGSTLNETLQSQQNLLCFTQRVLDAITEKLR 80 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 I + L G Q LS+LG G + IG A+ ++ QA Sbjct: 81 APAWLFCITNAQGITLHLQGTATISQALSSLGLCVGADWTDKRIGNHAIERCLVTHQAQL 140 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 + +H + L W F A P+FD G L ++ L +Q T L + ARE+ LL Sbjct: 141 SSGAEHLSKALHPWFFSAVPIFDPMGELLASLTLIGETQQHTIMIDALMESAAREIETLL 200 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 ++ L + N L Q + LLE ++ GV++W G +Q+IN A + L LD + G I Sbjct: 201 SSEQRLTQANTLLTQRDVLLEGIEQGVVTWQASGYVQYINHCARQWLGLDESH-IGLHIE 259 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L P V++QA+ + L+ VE + Q Q + +++LKP+ + + L HP E + Sbjct: 260 ALFHFPPVVEQALAERTKLEKVEVMVDCQQQLLKVILSLKPLSSGE---VMALFHPSEPL 316 Query: 310 -----RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 R + + + + P +R+ +AA+ S PVLL GE+GVGK L Sbjct: 317 TQPHERHFIGGDYWQPGENLW-LLEGHPCQQRI----EKAAKVSVPVLLQGEDGVGKLSL 371 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEK 424 + AIH++S++ P + ++C LA+ +G D++ + S+ ELA+ GTL LE Sbjct: 372 ALAIHHKSQQRLAPLMIIDCAALQPEQLAQALLG----DDQQSQPSKFELAYNGTLILEH 427 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 IEYL LQ++LL ++K G +TRL ++++IP++V+VI+T++ADL LVE FSRQL YA Sbjct: 428 IEYLPPNLQASLLAILKTGFLTRLHSQQVIPVNVRVISTSSADLDKLVESGLFSRQLCYA 487 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 + E+ IPP R +L+++ + + DAL RL+ +WPGN EL Sbjct: 488 MQGIEVCIPPQREALDYTRSLISHIVHRAN------YTLAADALQRLLDYSWPGNRSELL 541 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 SV++ + LSS + IR+ DLP+ + + S +EK AII+A + Sbjct: 542 SVMDKVLLSSAHHVIRLCDLPDRIRQR-------TDQAQPIQSLELMEKNAIIHALKHHQ 594 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGID 631 G +Q+ + LG+GRTTLWRK++++ ID Sbjct: 595 GHLQQTAKALGVGRTTLWRKIRKYDID 621 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 211/477 (44%), Gaps = 40/477 (8%) Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L E + L ++ +G+ DE G +Q N +R + + + G Sbjct: 149 AFQKYMKQQLEEARHVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIG 208 Query: 246 R---AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSF 299 + + E LP VL+ + + + + ++ + V+ PI + G Sbjct: 209 QRAENVIENTRLPVVLKTGVPERNQVHRLQGQ--------NLVVHRMPIWKQGRVIGAVG 260 Query: 300 ILLLHPVEQMRQLMT-------------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 +L+ + + +++ S+ K F + + R+AAR Sbjct: 261 MLIHEGISDIYKILERFDQKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAAR 320 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD 403 S VL+ GE GVGK ++AIH GP+I+VNC D L E G G T Sbjct: 321 SKASVLITGESGVGKEQFARAIHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTG 380 Query: 404 NEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G+ + ELA+ GTLFL++I +++ Q +L+V+++ I R+ IP+D ++IA Sbjct: 381 AKKNGKAGKFELANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIA 440 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T DL +V + F LY+ LH I IPPLR R+ IP +V L+ L + ++ K Sbjct: 441 ATNKDLKQMVREGTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEK 500 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT------- 574 +D + L + WPGN EL +V+E L SD+ IR DLPE + Sbjct: 501 TLDKEVLRLMFHYNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPM 560 Query: 575 -DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + A + + + E E+ I + G + +ALLGI R TL+ K+ + I Sbjct: 561 IQSLPAKQEAMKVVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 127/486 (26%), Positives = 207/486 (42%), Gaps = 41/486 (8%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 +A V + + +++ ++ L L +LE +GV DE Sbjct: 208 IATAVPIYQNMKNKGVIFVIQDMTDVEGVAHELETVKELKMTLETVLEVAYEGVAVLDEA 267 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + +NA+ + G I + L PL +E + Sbjct: 268 GMITLVNARFCNKIGKPKDNIIGENINRFIPLS-------HNQMPLSVLEINAK------ 314 Query: 283 DAVITLKPIIETQGTS--FILLLHPVEQMRQLMTS----------------QLGKVSHTF 324 V++ PI + T + + ++ + ++ ++ S+T Sbjct: 315 PCVVSTLPITKEGNTKGFVVKIYEDLDNLADIVQQINRINMQLNYYKNELYKVNGTSYTV 374 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + D + L Q RS+ VL+ GE G GK L + +IHN S R P+I VNC Sbjct: 375 GSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNC 434 Query: 385 ELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 E G + T + G+ + ELA GT+FL++I + + LQS LL+VI Sbjct: 435 SAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVI 494 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + I R+ + +DV++IA T DL +V + F LY+ ++ E+ IPPLR RR Sbjct: 495 QDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRK 554 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 IP L + +R + R++ I + AL L WPGN EL ++IE + ++G I Sbjct: 555 DIPLLADTFIRKYNNQLGRRVEGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLI 614 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 + DLPE + AT+ + A +E E I A GG + + LLGI R+ Sbjct: 615 ELQDLPEEIVGRPGGMAAKATQ-----TLAVMEMETIQAALAEAGGNKSKAARLLGISRS 669 Query: 620 TLWRKM 625 L+ K+ Sbjct: 670 KLYEKL 675 Score = 45.1 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQGRAITEL 251 LL T+ +L+ ++E++ G+++ + G + N A +L + + G + EL Sbjct: 123 ELLDRTDYLFRELSGVIENVPAGILATSDTGMVTMANQYAKNILGGVQSGRYIGDYLQEL 182 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMR 310 + + + + +H + + T PI + + I ++ + + Sbjct: 183 ERDFSPVISG--------NWMLPRKIEHNALKLIATAVPIYQNMKNKGVIFVIQDMTDVE 234 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 114/458 (24%), Positives = 205/458 (44%), Gaps = 27/458 (5%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 + +LE+ D + DE G + ++N + ++ G++I ++ Sbjct: 217 MKEINEKFTKILENSQDMICFVDENGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLR 276 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTS- 315 + K+ LK V + I+ + T+ P+ I+ Q I PV +++LM+ Sbjct: 277 AK-VFKEKTLLKDVI----HKKNGINVISTIDPLFIDGQFKGVISTSRPVSLIKELMSKL 331 Query: 316 ---------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + + +F ++ + +++ ++A+ ++ VL+ GE G G Sbjct: 332 NKSEQELDYYKNEFLRQLSKNSSFNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTG 391 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHG 417 K L+++AIHN S R P++ VNC + L E G + T + + +A Sbjct: 392 KELIAKAIHNNSNRKNKPFVRVNCASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADT 451 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GT+FL++I + + +Q LL+V+++ I + IDV+VIA T +L ++E F Sbjct: 452 GTIFLDEIGDMPLSMQVKLLRVLQEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSF 511 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAW 536 LYY L+ I +PPLR R+ IP L + + L K+ + I DAL L+ +W Sbjct: 512 REDLYYRLNVLGINLPPLRERKEDIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSW 571 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 PGN EL +++E D I S LP +L ++ + L F E EK+ I Sbjct: 572 PGNIRELENIMERAINLCDGDYIDSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQII 631 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 A + + LG+ T+ K K++ I+ + Sbjct: 632 EAAMKKYK-SFNKAGKALGLTHRTVSLKCKKYNIEVKK 668 Score = 56.7 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 15/132 (11%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT---LPAVLQQAI 262 +LES+ G++ D N+ IN A R + + +G+ I E++ LP V+ + Sbjct: 115 EQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNL 174 Query: 263 KQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSH 322 K+ H+ + + V + I + I ++ V + + +++ Sbjct: 175 KKYGSTLHI-------NNRVGLVNSSPLFINDKIIGAISVIQDVSDII-----GMKEINE 222 Query: 323 TFAHMPQDDPQT 334 F + ++ Sbjct: 223 KFTKILENSQDM 234 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 125/506 (24%), Positives = 215/506 (42%), Gaps = 45/506 (8%) Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNA 207 +P+ ++ G L G I + L E + +L Sbjct: 87 SPIRNADGELVGAIGVFQDN------------------SELESMTHAFKEEKKVAEELQD 128 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA-IKQAH 266 ++ES DG+ D QG +N+ R+ + G+ + EL+ + Sbjct: 129 IIESSYDGMWITDGQGYTLHVNSAYERISGMKKEEVLGKHMQELVDKGYFSDSVTLHVLE 188 Query: 267 PLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGKVSHT- 323 + V E + A+IT PI + G ++ + + ++ L K Sbjct: 189 KKERVTMMHEIRKTGKRALITGNPIFDENGEIVRVVTNVRDITELLNLKQDLEDKAKQAA 248 Query: 324 --------------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + + + PQ R + + VL+ GE GVGK +++Q + Sbjct: 249 RYQNELAQLRSKSIYDDIVVESPQMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQIVV 308 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 SER P+I VNC + L E G + T + G+ ELAH GT+ L+++ Sbjct: 309 RSSERRDEPFIKVNCGAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEV 368 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ LL+ I++ I R+ + + +DV++IA T DL LV +F L+Y L Sbjct: 369 AEIPLNLQVKLLRAIQEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRL 428 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + IT+PPLR RR IPAL+ L +++ + + + RLVS WPGN EL + Sbjct: 429 NVIPITVPPLRERREDIPALIELFLCKYNEKYRLNKTLAPETVERLVSYDWPGNVRELQN 488 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA----EVEKEAIINAAQ 601 ++E + + S + + LP L + TD +S + EVEK+ ++ A Q Sbjct: 489 IVERMVVLSRDDEVGPDALPLQLKSVGKTDADFHVDVSGVVPLKDALFEVEKKLVVKALQ 548 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQ 627 G + + LG+ ++T+ RK ++ Sbjct: 549 KY-GTTRRAAEALGVDQSTVVRKYQR 573 Score = 69.0 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L +L+S+ +G+++ D G + IN AARV G + ++ +L + I+ Sbjct: 8 LQTVLDSVYNGIVACDTDGRIILINESAARVAGQPKDKLMGARVDQVFPNTGLL-EIIRT 66 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMT--SQLGKV 320 H F+ + + PI G I + ++ + + KV Sbjct: 67 GENRPHQRLNFQGRL----LLSNRSPIRNADGELVGAIGVFQDNSELESMTHAFKEEKKV 122 Query: 321 SHTFAHMPQDD 331 + + + Sbjct: 123 AEELQDIIESS 133 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 517 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 139/552 (25%), Positives = 232/552 (42%), Gaps = 68/552 (12%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT---DSLLAETNRH----- 201 +F+ KG L C + + PL + N L +S++ E +R Sbjct: 30 VFNLKGELLAFYCKVCENCKFKESPFPLEHELLNMCFNDELKIIVESIIEEVDRLDDLVI 89 Query: 202 --------------------LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 +L A++ES DG+ D G IN R+ + Sbjct: 90 KVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKD 149 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSF 299 GR + EL + KQ K + + V+T P+++ G Sbjct: 150 EVIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRV 209 Query: 300 ILLLHPVEQM---RQLMTSQLGKVSH--------------------TFAHMPQDDPQTRR 336 + + + ++ R+ + K H F P + Sbjct: 210 VTNVRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLFCQAQQDFKGFIIKSPLMKD 269 Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 +I+ + AR+ VL+ GE G GK ++++ IH S R ++ VNC + + EF Sbjct: 270 VIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAIPENLMESEF 329 Query: 397 IGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G + T + G++ ELA GGTLFL+++ L + LQ LL+ ++ I RL + + Sbjct: 330 FGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTK 389 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 I +DV++IA T +LA LVE+ +F LYY L+ I IPPLR R+ I + L Sbjct: 390 PIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTR 449 Query: 513 LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ 572 + +++ + K + L L WPGN EL +VIE+ + S I V DLP HL + Sbjct: 450 INEKYGSEKKFTREVLEILKEYKWPGNIRELENVIEHAYVVSQ-DEINVEDLPIHLDSLY 508 Query: 573 ATDDVSA-----TRLSTSLSFAE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 A + +++ E VEK+ I +A G +++LG+ ++T+ R Sbjct: 509 GEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKY-GTETRAASVLGVNQSTISR 567 Query: 624 KMKQHGIDAGQF 635 K+K++ ID + Sbjct: 568 KIKKYNIDVKKI 579 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 211/444 (47%), Gaps = 17/444 (3%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL-----PAVL 258 N +L+S+++GV + D LQ +NA A ++ ++GR +L + Sbjct: 9 HHNIVLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPI 68 Query: 259 QQAIKQAHPLKHVEA-TFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTS 315 +Q + P+ + ++ + + I+ + + +G + + ++ +L Sbjct: 69 RQTLTTGEPVVNRRTYILNAKEECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCRE 128 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 K +TF + P + + A+S VL+ GE G GK L ++ +HN S R Sbjct: 129 L--KSHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRC 186 Query: 376 AGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 G ++ VNC D L EF G + TD + R R ELAH G++FL++I ++ L Sbjct: 187 RGQFVPVNCAALPDTLLESEFFGYEPGAFTDAKRSRSGRFELAHCGSIFLDEIGDISQAL 246 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V+++ + L + + IDV+VI T +L LVEQ F R LYY + ++ I Sbjct: 247 QVRLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRI 306 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR RR IP L+++ + + + + D + RL +PGN EL +++E Sbjct: 307 PPLRERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAF 366 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + I + LP L Q+ + + + L+ E+E+ I A Q+ G + + Sbjct: 367 VFCQGALIEMRHLPSELRDTQSRNLLGDKQ---GLTLKEMERALITRALQINKGHRKNSA 423 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQF 635 LGI +TL+RKMK ID+ + Sbjct: 424 RTLGINPSTLYRKMKALEIDSFAY 447 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 130/609 (21%), Positives = 239/609 (39%), Gaps = 75/609 (12%) Query: 53 MLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGI 112 +L + + + + DE ++ N + + E Sbjct: 122 LLKSASTLKDQLETILTHSNIGVLMTDEHLRVIYANASFSKIT-GHPINSIYSKDLNETF 180 Query: 113 IGTCALSLAAISGQAVKTMADQH---FKQVLWNWAFCATP-LFDSKGRLTGTIALACPVE 168 ++T H +K +L A + +G++ Sbjct: 181 -----------PSLPMETHGPYHSEEYKSILH---MSAYETVTHKQGKII---------- 216 Query: 169 QTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFI 228 + +++ + L + + L+ DG++ DE ++ + Sbjct: 217 ------------LFQDISEIEKMAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMV 264 Query: 229 NAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITL 288 + + LD + + ++ Q + Q + E + + I ++ Sbjct: 265 SPPLLELFNLDKKDVLHKKVDIVMP-----QLKLDQVFKTEAAEVSDLHERNGIKYIVHR 319 Query: 289 KPIIETQ---GTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQ 329 PI + G ++ + ++ L + T+ H+ Sbjct: 320 IPIKKEGKVIGAIGKVMFRQLNEVSALFKRLQKAESKASFYHQQLQKSETARFTWDHILS 379 Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 P +L +AA+ VL+ GE G GK L + AIHN S R+ G ++ VNC + Sbjct: 380 KHPYMDKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPE 439 Query: 390 AALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 L EF G G T + G++ + +LA+GGTLFL++I ++V LQ+ LL+V+++ Sbjct: 440 DLLESEFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREF 499 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 R+ I +DV++IA T DL +V++ F LYY L+ + IPPLR R + L Sbjct: 500 YRVGGNSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYL 559 Query: 506 VNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 + + L T + I A L+ WPGN EL +++E +++G I+V DL Sbjct: 560 TSQLMIELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVEDL 619 Query: 565 PEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK 624 P++L + L+ + E EAI A G + + LLGI R+ L+ K Sbjct: 620 PDYLIDQLTIPKKEKNGLA-----EDAELEAIRKALTQANGNKAQAARLLGISRSGLYEK 674 Query: 625 MKQHGIDAG 633 +K++ + A Sbjct: 675 LKKYELSAK 683 Score = 48.2 bits (114), Expect = 9e-04, Method: Composition-based stats. Identities = 27/233 (11%), Positives = 73/233 (31%), Gaps = 41/233 (17%) Query: 123 ISGQAVKTMADQHFKQVLWNWAFCAT-PLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 Q ++ H + + + T + D G++ G + Sbjct: 74 KETQTIRIDTPYHEIEQIVKTSKAGTGVVLDEHGKVIGLLT------------------- 114 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 + +LL + +QL +L + GV+ DE + + NA +++ Sbjct: 115 -----KTEMVMTLLKSASTLKDQLETILTHSNIGVLMTDEHLRVIYANASFSKITGHPIN 169 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHV--EATFESQHQFIDAVITLKPIIETQGTSF 299 + + + E + + K + + +E+ +I + I E + Sbjct: 170 SIYSKDLNETFPSLPMETHGPYHSEEYKSILHMSAYETVTHKQGKIILFQDISEIEK--- 226 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQD---------DPQTRRLIHFGRQ 343 + ++ +++L + + H + + P L + ++ Sbjct: 227 --MAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMVSPPLLELFNLDKK 277 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 134/494 (27%), Positives = 213/494 (43%), Gaps = 37/494 (7%) Query: 162 ALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDE 221 E TT D + + V L + +L+ ++ L ++E DGV+ D+ Sbjct: 86 TFVLRKEHTTINDQLYYVYLFSSVKGL---EEILSASSEKTELLETVMEFAFDGVVMVDK 142 Query: 222 QGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF 281 G + ++ + A L + G+ T+++ + K P + + Sbjct: 143 DGYITMLSKEYAEFLNVRVEDVIGKHATDVIE-NTRMHIVAKTGKPEVADLQRIKGDY-- 199 Query: 282 IDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTS----------------QLGKVSH 322 + T PII+ G +L V L + K ++ Sbjct: 200 --MIATRVPIIKNGEITGAVGRVLFQNVGGFNSLYKRVKLMETELKKYKGEFREQNKATY 257 Query: 323 TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 TF H+ D + H +AA S VLL GE G GK L + AIHN RA G ++ V Sbjct: 258 TFHHIVGDSDSIIKAKHQAERAANSDSNVLLLGESGTGKELFAHAIHNAGSRAPGSFVKV 317 Query: 383 NCELYGDAALAEEFIGGD---RTDNENGRLSR-LELAHGGTLFLEKIEYLAVELQSALLQ 438 NC L E G + T + G E A GGT+FL++I L + +Q L+ Sbjct: 318 NCAAIPPDLLESELFGYEEGSFTGAKKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLR 377 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V+++ + R+ + PIDV+VIA T +L +V++ F L+Y L+ I IPPLR R Sbjct: 378 VLQEKEVERVGSTTSKPIDVRVIAATNRNLEEMVDKGEFRLDLFYRLNVVAIHIPPLRDR 437 Query: 499 RGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557 + L + + L ++ I DA L WPGN EL +VIE DNG Sbjct: 438 EKDLGQLCLHFIEKLNPIMKKKVDGISKDAQRLLHQYKWPGNIRELENVIERALNMLDNG 497 Query: 558 R-IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 I+ LP L + V S ++S + EK A++NA + T G + ++LLGI Sbjct: 498 TVIKSEHLPAKLTDTPSNHSVE----SLAVSIEKAEKTALMNALKQTKGNRSKAASLLGI 553 Query: 617 GRTTLWRKMKQHGI 630 R+T + K+ ++ + Sbjct: 554 SRSTFYEKLTKYQL 567 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 516 bits (1331), Expect = e-145, Method: Composition-based stats. Identities = 133/542 (24%), Positives = 241/542 (44%), Gaps = 22/542 (4%) Query: 107 YCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRL-TGTIALAC 165 + E + LA G+ ++T+ L P ++ GT+ + Sbjct: 119 FMNEAAAHMAGVELAKAIGKPIQTLLP---SSGLPRVIETQQPEYNQLHEFDNGTVIVTT 175 Query: 166 PVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNL 225 V +A+ ++V + + L A++ S +D + DE G Sbjct: 176 RVPLIFGGACSGAIAVFKDVTEATQLAEQVTDLRSIQTMLEAIINSSNDAISVVDENGTG 235 Query: 226 QFINAQAARVLRLDATASQGRAIT-ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 +N ++ LD+ G+ T ++ ++ Q ++ P++ H+ Sbjct: 236 LMVNPAYTKLTGLDSDQIIGQPATADISEGESIHMQVLRTKKPVRGARLKL-GPHKKDVI 294 Query: 285 VITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG--------KVSHTFAHMPQDDPQTRR 336 V +++ + I ++H V ++ +L + + +++F+ + + Sbjct: 295 VNVAPVVVDGELKGSIGVIHDVSELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAF 354 Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 I ++ A++SFP+LL GE G GK L + AIHNESER P++ VNC + L E Sbjct: 355 AIEQAKRGAKTSFPILLLGETGTGKELFAHAIHNESERKGQPFVRVNCAALTETLLESEL 414 Query: 397 IGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G + + ++G+ E A G++FL++I ++ Q+ LL+V+++ I R+ + Sbjct: 415 FGYEQGAFSGALKSGKKGLFEEAEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTK 474 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 IPI V+VIA T DL + + RF LYY L+ I IPPLR R +PAL+++ LR Sbjct: 475 PIPIHVRVIAATNVDLEGAIRERRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLRK 534 Query: 513 LEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD--LPEHLF 569 L + ++ I L+R WPGN EL +V+ + D G ++D LP+ Sbjct: 535 LNLDYGHNIQSISKLVLSRFEGYYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFG 594 Query: 570 TEQATDDVSATRLSTSLS-FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++ AT + AE EKE + G E + LLGI +L+ K++++ Sbjct: 595 QSGKREESDATAPKQLQAFLAEKEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEKY 654 Query: 629 GI 630 + Sbjct: 655 NL 656 Score = 57.4 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 21/174 (12%) Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 + + E + + + ++ DG+I + +QF+N AA + ++ + G+ I Sbjct: 81 QMAWEKVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPI 140 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 LL + L + I+ P + F++ + + L I + I + V + Sbjct: 141 QTLLP-SSGLPRVIETQQPEYNQLHEFDNGTVIVTTRVPL--IFGGACSGAIAVFKDVTE 197 Query: 309 MRQLMTSQ--LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 QL L + + ++ E G G Sbjct: 198 ATQLAEQVTDLRSIQTMLEAIINSSNDAISVVD----------------ENGTG 235 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 129/503 (25%), Positives = 221/503 (43%), Gaps = 36/503 (7%) Query: 159 GTIALACPVEQTTAA-DLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVI 217 G L C + ++ + I +++ +L S L + N L +++E DG+I Sbjct: 213 GEHTLLCNITPIMTMDNINGAIIIFQDLTDLECIASELESVTKLYNTLQSVMEIAYDGII 272 Query: 218 SWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES 277 D++G + N A L G+ + +++ + L++ IK H Sbjct: 273 VIDKKGVITMANQSIADFLHKSRENMVGKPVEDIIE-NSRLRKVIKTGVAELHQLQFING 331 Query: 278 QHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTSQLG---KVSH--------- 322 V++ PI+ G ++L + +R L + KV++ Sbjct: 332 N----PHVVSRMPIVRDGKALGAVGMILFSNFKDVRNLAQKFIRLDQKVAYYKNQIRNDM 387 Query: 323 ----TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 TF + +++ AA+SS +L+ GE G GK L++Q+IH Sbjct: 388 SNKITFDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGKELMAQSIHEAGVSRDKR 447 Query: 379 YIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 + VNC L EF G G T + G+L +L LA GGTLFL++I ++ LQS Sbjct: 448 LVKVNCAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQS 507 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V++ + + + + +VIA T DL +V++ RF LYY L+ IPP Sbjct: 508 KLLRVLQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPP 567 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R I LV+ + + ++ I DDA+ L+ WPGN EL +V+E +A Sbjct: 568 LRERPQDIILLVHFFIEKYNHILGSAIQDISDDAMTVLLEHTWPGNVRELENVVERVANF 627 Query: 554 SDNGRIRVSDLPEHLFTEQATDD------VSATRLSTSLSFAEVEKEAIINAAQVTGGRI 607 + + DLP +L ++ +T+ S + +K AI +A + G Sbjct: 628 VKGNLVDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLHKSRDDHDKLAIQSALREADGNK 687 Query: 608 QEMSALLGIGRTTLWRKMKQHGI 630 + + +LGI R+ L+ KM + + Sbjct: 688 AKAAKILGISRSWLYTKMARFDL 710 Score = 63.2 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 47/119 (39%), Gaps = 6/119 (5%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 ++ +Q+ +L SM +GV++ D G + IN A R+ + + G+ ++ L Sbjct: 131 AMFENETLLNHQMQIILNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPVS-LF 189 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLLHPVEQMR 310 L + + + V +S + + + PI+ I++ + + Sbjct: 190 LKGLELDEVLLKG----VVSIGIKSTYGEHTLLCNITPIMTMDNINGAIIIFQDLTDLE 244 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 121/482 (25%), Positives = 211/482 (43%), Gaps = 30/482 (6%) Query: 171 TAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINA 230 + + ++L L E + ++L A+L S+ + + D G +++ N Sbjct: 90 HQGTAVMEALAGNLLMSILQAKEELLEVKKLKSELWAILNSVQEAIEVADNSGLIKYTNP 149 Query: 231 QAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 RV + G+ I E A+ Q +KQ + + ++ + P Sbjct: 150 AFTRVTGIPEAQRVGKNIFEASPHGALAQALVKQKPVVGYRSKV---GGSGVEVISNAAP 206 Query: 291 I-IETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQ 333 I +E + +++ P+ + +LM Q+ +TF + Sbjct: 207 ILVEGEVEGAVVVFQPITDILKLMDELQKSTTIIENLYAKIDQITGSKYTFDDLTGSSKV 266 Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 I ++AA+S PVLL GE G GK L + AIH S+R P+I + C + L Sbjct: 267 FAATIDMAKKAAKSDSPVLLTGESGTGKELYAHAIHQASQRRGKPFIKIGCASVPEELLE 326 Query: 394 EEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 E G + T +L ++ELA+GGTLFL++I + LQ L+++++ R+ Sbjct: 327 SELFGHEKGAFTGAVKTKLGKVELANGGTLFLDEIGEMNPYLQGKLMRLLQDQEFERVGG 386 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL 510 I DV+VI T DL LV + RF +LY+ L+ E+ +PPLR RR IP LV + + Sbjct: 387 SETIRSDVRVITATNIDLKSLVRKGRFREELYFLLNVIELNLPPLRQRREDIPVLVEHFI 446 Query: 511 RSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 L ++ +++ + DAL L WPGN EL +VIE +S + I ++ Sbjct: 447 GKLNRKLGKKVRGVAPDALQLLSGYDWPGNIRELENVIERAMVSVETEVIGRQHFSPYIG 506 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMK 626 + T + + ++E+ + A G ++ + L I TL+ K+K Sbjct: 507 QFTNAETTQCTEI---VPLDKMEQMMLKAALARYGESLEGKKKAAQALNISLATLYNKLK 563 Query: 627 QH 628 ++ Sbjct: 564 KY 565 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 122/464 (26%), Positives = 210/464 (45%), Gaps = 28/464 (6%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 S+ AE + L+A + DD D G I++ A ++ L G+ ++E Sbjct: 109 LKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVSE 168 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQ 308 L A K A K + ++T P + + + + Sbjct: 169 LEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITD 228 Query: 309 MRQLMTSQ------LGKVSHTFAH----------MPQDDPQTRRLIHFGRQAARSSFPVL 352 +L T L K + + Q RLI + A + +L Sbjct: 229 EEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTIL 288 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGR 408 + GE GVGK +L++ IHN S R+ GP+I +NC + L E G + T + G+ Sbjct: 289 IYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGK 347 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 +E+A GTL L++I L + LQ LL+V+++ R+ + I +DV++IA + DL Sbjct: 348 PGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDL 407 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 LV++ +F + LYY L+ +TIPPLR R IP L + L +++ ++ ++ + Sbjct: 408 KELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVM 467 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 + WPGN EL +VIE + + S+N +I DLP L ++ T+ +S + Sbjct: 468 EIFMKYPWPGNVRELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPL 527 Query: 589 AE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E VE + I A + G + + +LG+ ++T+ RK+K++ Sbjct: 528 KEASALVEYQLIKQAIEEC-GSSYKAAEVLGVDQSTIIRKLKKY 570 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 513 bits (1322), Expect = e-144, Method: Composition-based stats. Identities = 120/461 (26%), Positives = 215/461 (46%), Gaps = 22/461 (4%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + + R ++E M +G++ E G +Q +N + G+ + + Sbjct: 1 MLKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCS-IFKC 59 Query: 255 PA--VLQQA--------IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILL 302 A +L+QA ++ +K +I + T + + QG + + Sbjct: 60 DACKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEI 119 Query: 303 LHPVEQMRQLMTS-----QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + +M +L + +F + Q + L +AA+S FPV +CGE Sbjct: 120 VTDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGES 179 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLEL 414 G GK L++QAIHN S RA PYI VNC ++ L E G G T R R E Sbjct: 180 GTGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEA 239 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 AH G +FL++I L + +Q LL+V++ R+ R I +D++ I T +L L+ + Sbjct: 240 AHKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIAR 299 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVS 533 F L+Y ++ I +PPLR R+ +P LV+ ++ L ++ ++ + +A+ + Sbjct: 300 GGFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQ 359 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 +WPGN EL S +E + ++ RIR +LPE+L + + + + +K Sbjct: 360 YSWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPAENLQQRQK 419 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + +I A + + G + + LLGI R T+ +M+++GID + Sbjct: 420 QELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGIDLQR 460 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 111/491 (22%), Positives = 201/491 (40%), Gaps = 24/491 (4%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + + + + +A+E+ L L L +LE+ +G + D Sbjct: 84 LYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLD 143 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 + N A + L + + I L P + + ++ E + Q Sbjct: 144 LDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFFCE--LPESADDIKTEVVEINGRQ 201 Query: 281 FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHTF 324 + + + G ++ V + L + T Sbjct: 202 VVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTE 261 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + P RL ++ A + VL+ GE G GK L++ A+H ES R G +I VNC Sbjct: 262 NKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFIKVNC 320 Query: 385 ELYGDAALAEEFIG---GDRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + E G G T + G ++ + ELA+ GT+FL++I + + +Q+ LL+V+ Sbjct: 321 AAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVL 380 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ + RL R+ I+V+VIA T +L L+++ +F LYY L+ + +P LR R Sbjct: 381 QEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIE 440 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 +P L+ + K + T + I + + ++ +WPGN EL +V+E + I Sbjct: 441 DLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGKVI 500 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 LP ++ E+ + S + EKE I A G + + LLGI R Sbjct: 501 EKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQ 560 Query: 620 TLWRKMKQHGI 630 L +++K + Sbjct: 561 WLHKRLKYFNL 571 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 HL+ LN +L+S+ + +++ DE+G + N + RV A + G+ I E+L + L + Sbjct: 8 HLSLLN-ILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPF-SGLNK 65 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMT--SQL 317 +K + V+ P+ + + I + + +++ + + Sbjct: 66 VLKTGESHIGRKFKIGDNL----YVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENV 121 Query: 318 GKVSHTFAHMP 328 + T + Sbjct: 122 LALKQTLETIL 132 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 111/493 (22%), Positives = 212/493 (43%), Gaps = 26/493 (5%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 ++ + +A+ +++ L L +L+A++ES DG+ D + Sbjct: 202 ISNRSPIKKDGKIIGAVAVLQDISELDKMSKELCYVKELNEELDAIVESSFDGLFITDGK 261 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + N + +DA G ++ ++ + + K ++ Sbjct: 262 GIILRYNKAFELLTGIDAHEYLGLSVEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGK 321 Query: 283 DAVITLKPIIETQGTSFILL--LHPVEQ-------------MRQLMTSQLGKVSHTFAH- 326 + T P+I+ G ++ + + + + Q +QL + + + Sbjct: 322 LTLTTGNPVIDANGEIIRVVCNVRDITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNS 381 Query: 327 --MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + R L+ + A VL+ GE G GK L+++ IH+ S R P+I VNC Sbjct: 382 ENLVVTSAKMRNLLDMVVRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNC 441 Query: 385 ELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + L E G G T + G+ +ELA GGTLFL++I + + LQ +L+ + Sbjct: 442 GAIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFL 501 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + I R+ I +DV+++ T +L +V+Q +F LYY L+ + IPPLR R+ Sbjct: 502 QNKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKD 561 Query: 501 SIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIR 560 IP L + + ++ KI + L+ WPGN EL ++IE + +++ + I Sbjct: 562 DIPPLAAHFIEVFNHKYKKNKKISPGVVDILMQYDWPGNIRELENLIERMVVTTMDDIIT 621 Query: 561 VSDLPEHLFTEQATDD---VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 DLP +L + + + + + VEK+ + A ++M+ L + Sbjct: 622 SEDLPSYLRDKVGISSSYIIVSGIVPLRDAVESVEKQLLERAYAKYR-TTRQMAKELKVD 680 Query: 618 RTTLWRKMKQHGI 630 +T+ RK ++ I Sbjct: 681 ASTVVRKAAKYCI 693 Score = 77.5 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 71/186 (38%), Gaps = 32/186 (17%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D KGR+ G + + + +L+ + Sbjct: 95 PVVDEKGRVVGI------------------------ITRGDIAKAFFNSYRNISLELDTI 130 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 + S + ++S DE+G ++ N AAR+L ++A A+ G+ I ++L+ + L I+ Sbjct: 131 MNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVLS-TSNLMDVIETGKVE 189 Query: 269 KHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTS--QLGKVSHTFA 325 + ++ + PI + + + +L + ++ ++ + +++ Sbjct: 190 TLKKVKLNDRY----FISNRSPIKKDGKIIGAVAVLQDISELDKMSKELCYVKELNEELD 245 Query: 326 HMPQDD 331 + + Sbjct: 246 AIVESS 251 >UniRef50_B1J9J9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=B1J9J9_PSEPW Length = 639 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 139/627 (22%), Positives = 245/627 (39%), Gaps = 36/627 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQA---QGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + I SW R QG ++ + + ++ L+ Sbjct: 37 LRDEIDASWRRSLGHGLDCLQGEQVGLGLEQGHDLRTLLEQNRLLVDAVTPELDYLVSRQ 96 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + D A +L+ G L++ + G+ +E + GT A+ A + G+ Sbjct: 97 GKAG-IIILGDAQANVLAIEGQKHVLEREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPT 155 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD-LPLTLAIAREVGN 187 +H+ L ++ + PL D G++ G + + D L + + A + + Sbjct: 156 LINCGEHYLDRLSPFSCTSVPLRDPHGQVIGVLDITREGAMAQPQDSLSMLMMAAGNIES 215 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 + + + L S G+++ G + N A ++L++ GR Sbjct: 216 RMFGLCHPEQMVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDNACQLLQVPRQGLIGRR 275 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 ++LL + A + V+ ++ +F + L G S Sbjct: 276 SSDLLGERSPAFIARLWQGAVSSVQT---AKGEFFFRALQLPRHSHLNGAS--------- 323 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 S + D + R + RQ + PVLL GE G GK ++++A Sbjct: 324 ---APGKPAQANKSPALEALAGGDARLARNLRMARQGLGNGLPVLLLGETGTGKEVVARA 380 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSRLELAHGGTLFLE 423 +H S RA ++AVNC + + E G G T G + RL AHGGTLFL+ Sbjct: 381 LHQASPRADKAFVAVNCAAIPEGLIESELFGYRDGAFTGSRRGGMVGRLMQAHGGTLFLD 440 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V+++ + L A IDV +I T DL LV+ LYY Sbjct: 441 EIGDMPLALQARLLRVLQERRVAPLGAGDEQEIDVALICATHRDLKRLVQDQHCREDLYY 500 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 ++ + +P LR R + ++ L + + +D A L + WPGN +L Sbjct: 501 RVNGVSLRLPALRER-DDLALIIEGLLEKAGAK---AVSLDPALAALLAAFDWPGNIRQL 556 Query: 544 YSVIENLALSSDNGR--IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 V+ ++G + + L + L E A+ + + + E E I NA Sbjct: 557 EMVVRTALAMREDGEQVLTLDHLTDCLLDELASGSAPSG------NLKDTELELIRNALA 610 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQH 628 G + + LGI R TL+RK+KQ Sbjct: 611 RHHGNVSAAAEALGISRATLYRKLKQL 637 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 511 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 113/446 (25%), Positives = 205/446 (45%), Gaps = 8/446 (1%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA 256 E ++ L +G+I DE N+ IN +L + +I +++ Sbjct: 20 EKFLSISVLQTAFNVAYEGLILIDENYNILKINTMGLNILNSTEDKLKKYSIKDIIRNYK 79 Query: 257 VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTS 315 + ++ ++++F + I + + P+ ++ I+ + + +L+ + Sbjct: 80 FIDDCLQNGIHKLSIDSSFLINNNSIRCITNIMPVKLQDSIIGAIISIRDTRHIHKLVNN 139 Query: 316 QLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 +G K S+TF + + + + +I ++A+ S +L+ G G GK L +QAIHN S R Sbjct: 140 VVGYKASYTFDDIITKNQKMKSIIELAKKASESDCSILIDGNSGTGKELFAQAIHNHSNR 199 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAV 430 GP++AVNC + E G + T + G + ELA GGT+FL++I L + Sbjct: 200 CHGPFVAVNCAAIPRELVESELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGELPL 259 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 ++QS LL+V+ I R+ ID++V+A T +L+ V F LYY L+ + Sbjct: 260 DIQSKLLRVLDNLKIMRVGGTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNVINV 319 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 + PL+ R + AL N + L + KI + + +L + WPGN EL +++E Sbjct: 320 HLIPLKDRVEDVEALTNCFVDKLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNIVER 379 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 ++ I L L + + + + +E +AI A G I + Sbjct: 380 SYYICEDNIITDKFLNNKLM-KNEHHNCCIGKEEPIVPLDILEHKAIEKALIHCKGNIVQ 438 Query: 610 MSALLGIGRTTLWRKMKQHGIDAGQF 635 S LLGI R T++RK+ ++ ID + Sbjct: 439 ASELLGISRATIYRKINKYNIDLNEI 464 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 130/519 (25%), Positives = 218/519 (42%), Gaps = 42/519 (8%) Query: 145 FCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE----VGNLLLTDSLLAETNR 200 +++ +E + + + E V + L N Sbjct: 43 CSCAVIYEEDS-------FTTLIEAFSNHSAVVIVNGNLEPICCVTAQQMIPFLYNSYND 95 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 L N ++++ D V DE+ ++ A ++ + G+ IT + + Sbjct: 96 LLAFYNTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKDL--E 153 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPII-----------ETQGTSFILLLHPVEQM 309 ++ H K + A F + +I P+ ET T+ + L + M Sbjct: 154 ILQSLHDGKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNM 213 Query: 310 RQLMTS------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 M + S F M P +R I R+ VL+ GE GVGK + Sbjct: 214 SHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEV 273 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGT 419 ++AIH SE A P+I++NC +A E G +R N G+ ++ELA GGT Sbjct: 274 FAKAIHEASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGT 333 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +++Q LL+V+++ R+ + I ID ++IA T DL + + F Sbjct: 334 LFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFRE 393 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPG 538 LYY L+ + IPPLR RR I L L ++ ++ + + L+ WPG Sbjct: 394 DLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPG 453 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEH----LFTEQATD---DVSATRLSTSLSFAEV 591 N EL +V+E L + + +G I+ LP H L E + + T LS E Sbjct: 454 NIRELRNVVERLVVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEH 513 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EK+ I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 514 EKKIIERALRILDGNKLECAKQLGVTRATLYNRLKRLGL 552 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 136/458 (29%), Positives = 213/458 (46%), Gaps = 14/458 (3%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AI + + + + ++ S DG+I+ D+ + N A +V + Sbjct: 171 AIVQAIHDAENIAEVRISERERAELFRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGIP 230 Query: 240 ATASQGRAITELLT---LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 A A+ G I + + LP +L+Q + L++V +F + + + Sbjct: 231 AAAAVGAKIRDKIPNTNLPRILRQGGSEDGELQYVGEKVIVTQRF-AIKVNGRVVGAVAN 289 Query: 297 TSFILLLHPVEQM-RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + L +E++ RQ + ++ A + + + LI R+ A VL+ G Sbjct: 290 FRDVTELQRLERLVRQKLHAKGLVARIRLADIIGESAALKGLIERARKFAAVDATVLIVG 349 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENG-RLSR 411 E G GK +L+Q IHN S RA GP++AVNC + L E G G T + G + Sbjct: 350 ETGTGKEMLAQGIHNASHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGGKPGL 409 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 ELAHGGT+FL++I + + LQS LL+V+++ + R+ R+IP+DV++IA + +L L Sbjct: 410 FELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRNLRNL 469 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 VE+ F LYY LH +T PPLR R+ IP LV LR ID A+ L Sbjct: 470 VEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSHLNPLVSDIDSLAVQLL 529 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIR---VSDLPEHLFTEQATDDVSATRLSTSLSF 588 WPGN EL + I+ L + S+ I VS L E L Q + + S Sbjct: 530 AEYEWPGNVRELENAIQRLIILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAAP--SL 587 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 A++E + I + LGI R+TLWRK++ Sbjct: 588 ADLEAQYIAAVLAEENNNKSRAAKRLGIDRSTLWRKLR 625 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 131/449 (29%), Positives = 206/449 (45%), Gaps = 25/449 (5%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVL 258 Q +L+S+ DGV + D + N A + + A+ + GR E+ VL Sbjct: 79 QTETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVL 138 Query: 259 QQAIKQAHPLKHVE-ATFESQHQFIDAVITLKPIIETQG--TSFILLLHP---VEQMRQL 312 + ++ P+ + A + + I ++ + G + VE +R+ Sbjct: 139 KFTMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHTIGGVETFRDLSLVETLRKE 198 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + Q + F + P L + ARS VL+ GE G GK LLS+A+H+ S Sbjct: 199 IDRQ-----YRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLS 253 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 RAAGP++A+NC D L E G G TD R R A GGTLFL++I ++ Sbjct: 254 SRAAGPFVAINCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVS 313 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 LQ LL+V+++ L + R + +V+++A + DLA LV + F + LYY ++ + Sbjct: 314 PALQVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVK 373 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIE 548 + +P L R+ IP L + + L K + + + +ALA + WPGN EL +VIE Sbjct: 374 LELPTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIE 433 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 + G I+ + LPE+L S LS + E AI +A R Sbjct: 434 YAFILCRGGLIQPAFLPEYLHAHACVLPDSG-----GLSLRDNEARAIRDALDRNQWRRM 488 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + LGI + TL RKMK+ I A +R Sbjct: 489 ATARELGIDKNTLRRKMKRLNIRADDPRR 517 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 133/466 (28%), Positives = 215/466 (46%), Gaps = 22/466 (4%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AI + + + Q +L+ +G+I+ D G + +NA A ++ L Sbjct: 173 AIYHALREAKRVARVRRQEQERSEQFRTILDYSTEGIITVDAAGAINLVNAAAMKITGLS 232 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 A G A+ +LL + + L VE Q AV + II Q Sbjct: 233 GEAV-GLAVDKLLPQLGLSRVLASGRAELGEVETVNGQQV----AVNRVPIIIRGQAVGA 287 Query: 300 ILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + PV ++RQ + + TF + D P R+ I R+ ++ + VL Sbjct: 288 VATFQPVADIQALEGKIRQKIYKRGLVARLTFDDILGDSPAIRQTIAIAREFSKVNSNVL 347 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGR 408 + GE G GK + +Q+IHN S R GP++AVNC + L E G G+ Sbjct: 348 ITGETGTGKEIFAQSIHNASSRRKGPFVAVNCAALPENLLESELFGYAEGAFTGAARGGK 407 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + ELAHGGT+FL++I ++ +LQ LL+V+++ I RL R+IP+DV++IA T DL Sbjct: 408 MGLFELAHGGTIFLDEISEISPKLQGRLLRVLQEREIMRLGDDRVIPVDVRIIAATNRDL 467 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 +++ F + LYY + ++ +PPLR R+ I L+ + L+ R + +K I DA Sbjct: 468 YQMMQAGLFRQDLYYRVDVLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNRPVKEIGPDA 527 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT-----DDVSATRL 582 A L WPGN EL ++ E LA+ + I D+ L E + Sbjct: 528 QAMLRRYHWPGNVRELRNIAERLAVLASGPVIGARDIAAVLTGETGRRKAINETAEPAAA 587 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + ++ + ++ A + +A LGI RTTLWR++KQ+ Sbjct: 588 LAGANDVDLNRAILLKALEEADYHYGRAAARLGISRTTLWRRLKQY 633 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 121/517 (23%), Positives = 220/517 (42%), Gaps = 43/517 (8%) Query: 139 VLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAET 198 + +P+ G + G + + +++ L L Sbjct: 197 NNHYFISNRSPII-KDGEIIGAVGVL------------------QDISELEELSRELKYV 237 Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 +L+A++ES DG+ D G +N + ++ GR + ++ V Sbjct: 238 KELNEELDAIIESSYDGLYITDGNGMTLRLNKAFEMITGINGREFLGRHVDDIAREGIVS 297 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL---------------L 303 + A K + + T P+ + G F ++ L Sbjct: 298 ESVSSLALARKETVTIIQETRSGKTTLATGSPVFDKIGNIFRVVCNVRDITELNMLKQKL 357 Query: 304 HPVEQMRQLMTSQLG--KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 V+ + Q SQL ++ + + R+L+ + A +L+ GE G GK Sbjct: 358 EQVQGLSQHYESQLKTLRIYSGTDKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGK 417 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHG 417 L+++ IHN S RA P+I VNC + + E G + T + G+ ELAH Sbjct: 418 ELIAETIHNHSARAKKPFIKVNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHE 477 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L LQ LL+V++ I R+ R+ + +D +++A T +L +V++ +F Sbjct: 478 GTLFLDEIGDLPFNLQVKLLRVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQF 537 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LYY LH + IPPLR R+ IP+L+ + + +++ +I D + L++ WP Sbjct: 538 REDLYYRLHVIPVIIPPLRDRKEDIPSLIVHFIALFNRKYKLNKRISPDVVDILMAYDWP 597 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR--LSTSLSFAEVEKEA 595 GN EL ++IE L + S + I +LP HL + + + + + VE++ Sbjct: 598 GNVRELENLIERLVVISSSDIISRDELPVHLSSAAVDNPQVSVSAIIPLKEAVESVERQL 657 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + A ++M+ L + +T+ RK ++GI Sbjct: 658 LERAFAQYR-TTRQMAQKLEVNASTVVRKAAKYGISP 693 Score = 69.8 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 61/154 (39%), Gaps = 8/154 (5%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I + L L ++L+A++ S + ++S D+Q ++ N A ++L+ A Sbjct: 103 IMGMITRTDLARVFLESYRNISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKA 162 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSF 299 +G+ I ++ + L IK + + + + PII + + Sbjct: 163 ENVKGKLIDDVYP-TSRLTNIIKSGQVETLQKIMLNNHY----FISNRSPIIKDGEIIGA 217 Query: 300 ILLLHPVEQMRQLMT--SQLGKVSHTFAHMPQDD 331 + +L + ++ +L + +++ + + Sbjct: 218 VGVLQDISELEELSRELKYVKELNEELDAIIESS 251 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 218/469 (46%), Gaps = 31/469 (6%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + + + L E + + L+E+ +G+I + QG + FIN +L L + + G+ Sbjct: 8 DHQIIEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKSDAIGK 67 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI------ 300 + ++ T + L Q I+ P+ + + ++ PII +G Sbjct: 68 HVWDV-TSHSQLPQVIETGRPILYDFWEVNGRK----LIVVRIPIINNEGNVIGAIGKSL 122 Query: 301 --------LLLHPVEQMRQLMT------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 LL ++ + + + ++ K ++ ++ + + + R+ A Sbjct: 123 FTDIPSGKLLFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVAS 182 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD--- 403 S+ +L+ GE G GK LL+QAIHN R P++ VNC + L E G D Sbjct: 183 SNSTILITGESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTG 242 Query: 404 -NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G+ + ELA GGT+FL++I + + +QS LL V+++ + R+ + +P+DV+VI+ Sbjct: 243 AKKGGKPGKFELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVIS 302 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T +L +V+ F LYY L+ +P LR R IP LVN L K+ + ++ Sbjct: 303 ATNRNLEDMVKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHVE 362 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 + A+ L WPGN +L + +E + +D+ + +P L + Sbjct: 363 GYTEQAMQLLTKYHWPGNVRQLENALERMFSFTDDKILSTEHMP-FLKKIVNVNSSEVNT 421 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 S + + AE EK+ I++A Q G + + LL I + L+RK+K++ I Sbjct: 422 KSLAETIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 115/446 (25%), Positives = 198/446 (44%), Gaps = 27/446 (6%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +L + + + D +G + F N Q L + + G+ +TE++ L I Sbjct: 23 EYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAIGKHVTEIIE-NTRLHVVISTE 81 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTSQ------ 316 P E + + +A++ P+ G + V++++ L Sbjct: 82 KP----EIDYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDVDEVKSLAKKLQVAENK 137 Query: 317 --------LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++ FA + + + A ++ VL+ GE GVGK L + AI Sbjct: 138 AKKFENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETGVGKELFAHAI 197 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEK 424 HN S GP++++NC L E G G T G++ + ELA GGT+FL++ Sbjct: 198 HNNSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDE 257 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + +QS LL+V++ R+ +DV+VIA T ++ V N F L+Y Sbjct: 258 IGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYR 317 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ + IPPLR R I +V+ L++L + A+ L WPGN EL Sbjct: 318 LNTISLIIPPLRERYEDISLIVDKSLKNLNSSEYGNKRFSSQAMQTLTMYDWPGNIRELL 377 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +V+E L D+ + + + + L + +++ + + EK+AIINA + Sbjct: 378 NVVERLFFLVDSDLVEENHVKQAL-SGINSEERKSNTNALEDQIHLTEKDAIINALESCN 436 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G + + LLGI RTTL++KMK+ + Sbjct: 437 GNKAQAAKLLGIHRTTLYQKMKKLNM 462 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 117/505 (23%), Positives = 223/505 (44%), Gaps = 40/505 (7%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D ++ G I + ++ + T L +L+++ Sbjct: 96 PVIDKNNKIIGIIT-----------HTDFINDLVEKISKKCRD---IKNTKLGLTELDSI 141 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 +E DG+ D + N IN + L GR + +L + Q A Sbjct: 142 IECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSATLLVLKN 201 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGKVSHTF-- 324 + + + +++ PI + G +++ + V Q+ +L T Sbjct: 202 RKTTTIQQEFKTGVKVLVSSNPIFDKNGKIIMVVTNVRDVTQLYELKEQLQKNKEITLKY 261 Query: 325 --------------AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + + +D +T +I + A+ +L+ GE G GK +++ IH Sbjct: 262 VSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKYIHK 321 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIE 426 S+R+ +I VNC + + EF G + T + G++ E+A GGT+FL+++ Sbjct: 322 VSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLDEVG 381 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L +++Q LL+V+++ + R+ + I IDV+V+A T DL ++++ +F LYY L+ Sbjct: 382 ELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYYRLN 441 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 + IPPLR R+ I L+N L L K+++ DAL + WPGN EL ++ Sbjct: 442 VIPLYIPPLRERKHDILPLINFFLTQLNKKYNFNKIFASDALNCMYEYNWPGNVRELKNI 501 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQA---TDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 +E + S++ +I+ SDLP+++ T + ++ + +EK+ I A Sbjct: 502 VERAVIMSEDDKIKRSDLPKNIIGSNGMIVTLNTFEEGINLKETLDAIEKKLIKKAYDKY 561 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQH 628 G ++ + LGI +T RK +++ Sbjct: 562 -GNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_A6CUY8 Hypothetical sigma-54 dependent transcriptional regulator n=1 Tax=Vibrio shilonii AK1 RepID=A6CUY8_9VIBR Length = 594 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 142/625 (22%), Positives = 255/625 (40%), Gaps = 51/625 (8%) Query: 15 LIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLT-LGQAALEDAWEYMAPRE 72 I SW+R + H+ V + + ++ + + A + + + Sbjct: 12 WIKDSWKRSIQAGLSSRHLPEDHRLSNVEVTERIDKHQTLINVIEKHAYPLFCQIFSRTD 71 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 L + D I+ G + ++L+ + + G EG+ GT A+ A + + V + Sbjct: 72 SRLILADTNGAIVKTWGQKRFREKLTEIALDQGVLWDEGLKGTNAIGTALVEKRPVSIIG 131 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 +HF + + A+P+F G L + + + A L + + + + LL Sbjct: 132 GEHFIRHHHFISCTASPIFSPAGELIAILDVTSEYQTHNDATRVLIQNMVQNIESELLNF 191 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 A L +++L S G++ D+ G + NA A+ Sbjct: 192 IPDAALKIRLGHDSSVLNSGWQGIVVTDKNGQVLAQNAIAS------------------- 232 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 +VL +K P++ V + TL I +T F + V+ +R L Sbjct: 233 ---SVLANQLKPGDPIESVIGSL-----------TLDRIRKTD--QFYYQVESVKPLRHL 276 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 S + K + + Q D + + +++ GE G GK +A+H +S Sbjct: 277 PKS-ISKAESSSCPLHQGDSCVEKAWQQATKVMSKRIGLVISGETGTGKNEFVKALHKQS 335 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGTLFLEKIEYL 428 AA P IA+NC + E G G T G R A+GG LFL++I L Sbjct: 336 SLAARPLIAINCGALPKDLIESELFGYAPGAFTGAHPKGFEGRFRQANGGILFLDEIADL 395 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + QS LL V+++ ++ + A R P+DV VI + +L +V + F L+Y L Sbjct: 396 PLNAQSRLLHVLQEKIVAPIGANRSYPVDVYVIVASHKNLTDMVAKGEFREDLWYRLEGL 455 Query: 489 EITIPPLRMRRGSIPALVN-NKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 IT+P +R R L+ + K+ ++ DD + ++ WPGN E++S Sbjct: 456 SITLPSVRER-EDTQQLIESTFTQESNKQ-----RLSDDVIDLMLKYDWPGNLREVHSTC 509 Query: 548 ENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI 607 +A DN + + DLPE++ + T + L K ++ + T G + Sbjct: 510 RLIAALCDNPIVNLDDLPENILRKLTTTRTATLEQDNDLQSTIDNK--LLKTIEETNGNV 567 Query: 608 QEMSALLGIGRTTLWRKMKQHGIDA 632 S +LG+ R T++RK+++ GID Sbjct: 568 SLASRILGVSRNTIYRKLRKLGIDK 592 >UniRef50_Q5WJF2 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WJF2_BACSK Length = 511 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 143/515 (27%), Positives = 236/515 (45%), Gaps = 41/515 (7%) Query: 146 CATPLFD---------SKGRLTGTIA-LACPVEQTTAADLPLTLAIAREVGNLLLTDSLL 195 A P+ D + L + L P + T + I + +L + LL Sbjct: 8 VAVPIADQPKNSEWRLPEDTLIAQLPPLLEPKDIFTVDHTNNVVGIVK---KQVLANVLL 64 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 E R L ++E+MDD V DE+ + INA++ ++ L + A G+ + + Sbjct: 65 EELKRTNAFLQTMMEAMDDAVTMVDEEQRIIQINAKSEQLYALTSCAIAGKPLRDYFDEE 124 Query: 256 A-VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ----GTSFILLLHPVEQMR 310 A VL +K P+ H + + ++ P+ E + G S + V ++ Sbjct: 125 ALVLWSVMKDKQPVVH---QYNQPKPGLHVIVNTVPVFEGEACVGGLSIERDITDVVRLN 181 Query: 311 QLMTSQLGKVSH--------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + ++S+ + H F + RR IH + A+++ VL+ GE GVGK Sbjct: 182 EELSSKTASLHHLNTTSEDEPFQKIIGRSEPIRRAIHLAAKVAKTTANVLITGESGVGKE 241 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSR-LELAHGG 418 L ++ IH S+RA P+IA+NC A E G G T G L+ A GG Sbjct: 242 LFAEGIHQASDRAEKPFIAINCGAIPAALFESELFGYVQGAFTGAAKGGKKGKLDAAKGG 301 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL+++ + ELQ LL+V+++ R+ IP+DV+++A T DL +V + RF Sbjct: 302 TLFLDEVGEMPAELQVKLLRVLEERAYYRVGGHEAIPLDVRIVAATNRDLEKMVAEGRFR 361 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWP 537 YY LH I+IPPLR R +P LV + L+ +R+ + K+D + L L + W Sbjct: 362 EDFYYRLHVISISIPPLRERIEDLPELVQSFLQEFAQRYEKPVPKLDPEVLYALRTQKWE 421 Query: 538 GNDFELYSVIENLALSSDN--GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 GN +L ++IE + + + + G + LPE + +++ E+ Sbjct: 422 GNIRQLRNLIERIVILNGDHEGSVHWYHLPESYQQKLKHMPLASKDKPKKD-----ERME 476 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 IINA + T G + LLGI R TL+ K+K + + Sbjct: 477 IINALEKTYGNKSAAAKLLGISRATLYNKLKHYKL 511 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 123/463 (26%), Positives = 210/463 (45%), Gaps = 23/463 (4%) Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + E + L+++ +G I ++ G + FI+ + L + G+ ITE+ Sbjct: 5 KRIEREFRENPVLAGVLIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEV 64 Query: 252 LTLPAVLQQAIKQAHPLKH-------------VEATFESQHQFIDAVITLKPIIETQGTS 298 L Q ++ P+ + + I AV + G + Sbjct: 65 HENTK-LTQVLETGKPISYDYWETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKT 123 Query: 299 FILLLHPVEQMRQLMTSQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 L +E+ + +L K +TF M + +++ ++ A S VL+ G Sbjct: 124 LANKLKQLEKEVEFYRQELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITG 183 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSR 411 E G GK L +QAIHN S R+ P++ +NC + L E G + G+ + Sbjct: 184 ESGTGKELFAQAIHNASYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGK 243 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 ELA GGT+FL++I L + +QS LL V+++ I R+ R + +D +VIA T +L + Sbjct: 244 FELAQGGTIFLDEIGELPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDM 303 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALAR 530 V++ F LYY L+ + IP LR R+ IP LVN L + + + ++A+ Sbjct: 304 VKEGTFRDDLYYRLNVISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLV 363 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L WPGN EL + +E + + SD+ I V+ LP + + + + + RL+ + Sbjct: 364 LSKHYWPGNIRELQNTLERVFILSDDNIISVNHLPFSIKMRKG-NIIQSKRLTLDEMIDQ 422 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 EK I++ + LLGI ++L+RKMK+HGI Sbjct: 423 TEKRIILDTLSNVKDDRIAAAELLGIHLSSLYRKMKKHGIKKS 465 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 113/463 (24%), Positives = 216/463 (46%), Gaps = 23/463 (4%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + D + ++ + L ++ ++ +GV D+ G + + A ++ R+ + G+ + Sbjct: 124 ILDKVYSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSDTAEKLYRVKSKELLGKKLE 183 Query: 250 ELLTLPAVLQQAIKQAHPLKHVE-------------ATFESQHQFIDAVITLKPIIETQG 296 A+L +K P+++V + + AV T + I ET Sbjct: 184 SFFPT-ALLLTVLKSEKPIRNVYHSPRDKSYAIISAVPIYINGELVAAVSTDRDITETAN 242 Query: 297 TSFILLLHPVE-QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 S L + Q+ +++ + ++F + + I +Q A ++ VL+ G Sbjct: 243 LSVELETTKEKLDYLQMEVNKINENQYSFDKVLGKSQVIKEKIDKAKQVASTNSSVLIGG 302 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSR 411 E G GK + ++AIH S R GP++A+NC + E G + T G++ + Sbjct: 303 ESGTGKEVFARAIHQVSGRK-GPFVAINCSAIPENLFESEIFGYEGGAFTGALNKGKIGK 361 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 +ELA GTLFL++I + + +Q+ LL+V+++ I R+ + + +DV++I+ T +L + Sbjct: 362 VELAENGTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVGGEKPVDVDVRIISATHRNLKTM 421 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALAR 530 V + +F L+Y L+ I +P L+ R I +N + K + + KI + Sbjct: 422 VMEGKFREDLFYRLNVVNIQLPSLKYRVEDIHIFLNQFMAEFCKENNLSIPKISMEVFHT 481 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV--SATRLSTSLSF 588 L++ WPGN EL + +E+L + S NG I +S +PEH+ + + + Sbjct: 482 LMNYDWPGNIRELKNTVEHLVVFSKNGEIIMSSIPEHILEKIGDSQYVDTPENYDLQENI 541 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +E I A +V G + + LL I R+TL+ K+K + I Sbjct: 542 KHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIKFYNIK 584 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 25/472 (5%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + + D L + L ++ + +G+ + + +G + N + + Sbjct: 129 LKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKSEDIV 188 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-----------E 293 GR + E L + ++ + + + F + + + A++ PI E Sbjct: 189 GRPMNEFLE-NTISEKVLNSKVGMSDL--YFTDKKENMYALVHANPIFYKEEFIGVVCTE 245 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSH----TFAHMPQDDPQTRRLIHFGRQAARSSF 349 T +L +E++ + +V + +F + + + +Q AR++ Sbjct: 246 VDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVARTNS 305 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-E 405 + + GE G GK + ++AIH+ SER +I VNC + EF G + T + Sbjct: 306 SIFIWGESGTGKEVFARAIHDYSERKGQ-FIPVNCSAIPNELFESEFFGYESGAFTGASK 364 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 GR+ ELA GT+FL++I L + +Q+ LL+V+++ I R+ I I+ ++I+ T Sbjct: 365 KGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRIISATN 424 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KID 524 DL+ +V+ +F LYY L+ EI IPPLR R+ I LV++ L + K+ + + I Sbjct: 425 KDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPVLTIS 484 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLS 583 D + + W GN EL + IEN+ + S N +I V D+P ++ + + L Sbjct: 485 KDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEEYPLD 544 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 + + ++E + I A +++ G + + +L I RTTL+ K+ Q+ ID + Sbjct: 545 LTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSKI 596 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 116/495 (23%), Positives = 228/495 (46%), Gaps = 16/495 (3%) Query: 150 LFDSKGRLTGT----IALACPVEQTTAADLPLTLAIAREVGNLLLTDSL-LAETNRHLNQ 204 ++D + + +E + + L EV +++ + L E ++ + Sbjct: 25 IYDLNINIVSIEVFPKTVFIKIEDIYSHNKDLIKKKLYEVSGIIMVCEINLLEYEKNERK 84 Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L A+++++DDGVI ++ N++ N+ ++ + + I +L P ++ IK Sbjct: 85 LLAIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDIIDKDIRTVLEDPLII-DLIKS 143 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVSH 322 K+VE S+ I + T + + G + + ++++ +L + Sbjct: 144 GKDYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVSSITDIKKVIELASVVSKMDKE 203 Query: 323 TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 F ++ + + + + + ++S+ V+L GE G GK L ++AI S R ++ + Sbjct: 204 AFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGKELFARAIQRLSNRKDKRFVIL 263 Query: 383 NCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 NC + + E G G T N G+ + A+ GT+FL++I L++ LQ+ LL+ Sbjct: 264 NCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANEGTIFLDEIGELSMVLQAKLLR 323 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V++ GV+ ++ + +DV++IA T +L +V++ F LYY L+ I IP LR R Sbjct: 324 VLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEFREDLYYRLNVIPIFIPSLRER 383 Query: 499 RGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557 IP +V ++ L + S ++ + D + L+ WPGN EL +V+E D Sbjct: 384 MEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNWPGNIRELQNVVERAMNLCDGK 443 Query: 558 RIRVSDL--PEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 + L ++ + A+ L EKEAII A + ++ + +LG Sbjct: 444 LLTKKHLMINSYINPISLDEVKEASDLKLKDIVEACEKEAIIKALKKNK-TFRKTAKVLG 502 Query: 616 IGRTTLWRKMKQHGI 630 + TT+ K+K++ I Sbjct: 503 VSHTTIINKIKKYNI 517 >UniRef50_B5EP01 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EP01_ACIF5 Length = 697 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 139/654 (21%), Positives = 255/654 (38%), Gaps = 38/654 (5%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVP--HQAQGVTFASIYRRKKAMLTLGQAALE 62 ++ D + I +W+RC + + P + + + + +G A + Sbjct: 49 YDTDPSMDNDYITHAWDRCTGQYRLDVNGAPELQRLDAGNLGRLLEEQHLFVEIGSAEMT 108 Query: 63 DAWEY---------MAPRECALFILDETACILSRNGDP-QTLQQLSALGFNDGTYCAEGI 112 + + +C L +LD L G ++ + G + G E Sbjct: 109 RLIKQTLRFSEDAMLPSPDCTLLLLDAGGVALHAVGTELESGRDARYSGMDAGFIWREEY 168 Query: 113 IGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIAL----ACPVE 168 +G SL + ++H + A CA P++ G L G I + + Sbjct: 169 VGVTGPSLCLHDMKPRMVHREEHLFRNFVEMACCAMPIWAPSGALLGVIDSTYSRSGYAK 228 Query: 169 QTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFI 228 + +PL +AR + + +N+LN + D+ + + +E G + Sbjct: 229 SAYVSVMPLLAQLARRIEMKYFARNYQDHVILSVNRLNDYTDHDDEALFAINENGVIV-- 286 Query: 229 NAQAARVL-----RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFID 283 A L G + ++ + H + + Sbjct: 287 --AAEFALTKGTIGDAKGGLVGANLRDVFDVSLDKMLDDHHRAEKSHSRTLLRNTGRHDG 344 Query: 284 AVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQ 343 + P + +L R + Q V + + DD I + Sbjct: 345 LRVFSLPDKVSFTAVVNGILRNTPHSRDEASVQ---VHDSLLALSGDDAVVSENIRRIHK 401 Query: 344 AARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD--- 400 + +LL GE G GK L++AIH S+R P++A+NC ++ + E G + Sbjct: 402 VLNKNISILLLGETGTGKDTLARAIHRASDRRDKPFVAINCAAIPESLIESELFGYEPGS 461 Query: 401 RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T G+ ++ A+GGTLFL++I + LQ LL+V+++ +T L + P+D++ Sbjct: 462 FTGASRVGKQGKVMAANGGTLFLDEIGDMPAALQGRLLRVLEEREVTPLGTTKASPVDIR 521 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 VI+ T + LV+Q F L Y ++ +++PPLR R LV + + Sbjct: 522 VISATNKSINDLVQQGGFRTDLLYRINDVVLSLPPLRER-SDKIRLVETICQQEC--GVS 578 Query: 520 RLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA 579 ++I + + +WPGN EL SVI SD IR DLPE L T + Sbjct: 579 EMEISAEVWNIFLGYSWPGNIRELRSVIRTALALSDGNAIRCEDLPERLVTGERAGGRVT 638 Query: 580 TRLSTSLSFAE---VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 T +T+ +++ +E+ I+ + R+ + + L + R TL+RKM+ +GI Sbjct: 639 TAPATTPPWSDSDALERNRILAELERHHWRVIDTAKFLKVSRNTLYRKMRLYGI 692 >UniRef50_B2TFZ7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=25 Tax=Burkholderia RepID=B2TFZ7_BURPP Length = 666 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 142/645 (22%), Positives = 240/645 (37%), Gaps = 38/645 (5%) Query: 13 SPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 SP + +SW+R + + + V P + +++A L L + + Sbjct: 27 SPRLVSSWQRSFEQYRLDPGAVIGPRVLSSAELREVQGKEEAFLRASGQCLSRLHDMIRV 86 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + D + D G G+ +E GTC ++ + Sbjct: 87 ADYCVMLTDAHGVTIDYRIDRDRRSDFKHAGLYIGSCWSEREEGTCGVANVLTDLAPIIV 146 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 HF+ A P+F G + G + + L + R+ L+ Sbjct: 147 HKTDHFRAAFTTLTCSAAPIFAPTGEMIGVLDASAVQSPDNRDSQRLVFQLVRQSAGLIE 206 Query: 191 TDSLLAETNRHLNQL----NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG- 245 L +T++H +E+ + +I++DE GNL N +A A G Sbjct: 207 DGYFLNQTSQHWVLFGHSSRNFVEAQPEVLIAFDECGNLVAANRKARE----CIPALNGP 262 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R I ++ I + + + + L+ I T Sbjct: 263 RHIDDVFDTSGSHLHDIARTDAIVGLRLRATGTTLYARIRAPLRRISRAASTLNEGAARS 322 Query: 306 VEQMRQ--LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + Q L LG+ H+ P+ + P+L+ GE GVGK + Sbjct: 323 SQSASQNDLHLGALGRFLHSAE------PRIAHNAAVALRVMGKRLPILILGETGVGKEV 376 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLELAHGGT 419 + A+H+ R A P+IAVNC ++ + E G G T G ++ AH GT Sbjct: 377 FAHAVHDSGARRARPFIAVNCGAIPESLIESELFGYAPGAFTGARSRGARGKIAQAHTGT 436 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + ++LQ+ LL+V+ +G +T L A + +D+ VI T DL +V F Sbjct: 437 LFLDEIGDMPLDLQTRLLRVLAEGEVTPLGADAPVRVDIDVICATHRDLTQMVAAGTFRE 496 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYY L + IPPLR R I ++ + L +D RL AWPGN Sbjct: 497 DLYYRLSGASLPIPPLRER-ADIRDVIEAVFDEEAQMAGHVLTLDPQLAERLAGFAWPGN 555 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA---------- 589 +L +V+ D+ R+ + + + A + V L Sbjct: 556 IRQLRNVLRYACAICDSARVELRHVAPDMAALLAPEAVHKPALLRIDPHDGRQRDALQAP 615 Query: 590 ----EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+ II+A R + LG+ R TL+R++ GI Sbjct: 616 RQDPREERARIIDALTRHQWRPNAAAQALGMSRATLYRRIASLGI 660 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 116/502 (23%), Positives = 232/502 (46%), Gaps = 24/502 (4%) Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADL-------PLTLAIAREVGNLLLTDSLLAETNR 200 +P+ + G++ I + E ++ + + + ++ E + Sbjct: 104 SPI-NLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEKTK 162 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 Q++A++ S+ +G+++ D+ + N +L + G+ + ++ + Sbjct: 163 AYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDI-RGDIIGQNVENVVP-ELPFEG 220 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQLGK 319 I E F I ++ +KPI + + + + +++ +L G Sbjct: 221 VITTGTSKLGHEQYFSKVG--IHCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGN 278 Query: 320 VS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 + +F + + + L ++ +++ VL+ GE G GK L ++AIH+ S R GP Sbjct: 279 TAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGP 338 Query: 379 YIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++ V+C + L E G + + G++ + ELA GGT+FL++I + + LQ+ Sbjct: 339 FVPVHCGAIPETLLESELFGYESGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQT 398 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V++ G R+ + I IDV+V+A T L +E+N+F R L+Y L+ + IP Sbjct: 399 KLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIPA 458 Query: 495 LRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR RR I L+N+ L + + + + ++ L +WPGN EL +V E Sbjct: 459 LRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQYSWPGNVRELENVAEYFINI 518 Query: 554 SDNGRIRVSDLPEHLFTE--QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR---IQ 608 ++ G + + DLP+++ + + D L E+EK + A ++ G Q Sbjct: 519 NEKGYLDLGDLPKNMKDKLLETQDYQKNVGDDEILPLEELEKRSFEKAVKIYGISEQGKQ 578 Query: 609 EMSALLGIGRTTLWRKMKQHGI 630 M+ LG+ R T++RK+K++G+ Sbjct: 579 LMAGKLGVSRATVYRKLKKYGL 600 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 117/459 (25%), Positives = 201/459 (43%), Gaps = 17/459 (3%) Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 E+G + + S+ G+I DE G + N A + ++ Sbjct: 89 NELGKEKEEKTTYELLKNTSIAYEKIFNSIGSGLIVTDENGAIMIFNKAAESITGINMDQ 148 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFIL 301 + G+ I E+++ + +K + + + + + PI T+ ++ Sbjct: 149 AIGKKIQEVMS-DIKIADVLKTGKEEMNKKLKIGTNV----VLTNITPIYTGTKIEGAVI 203 Query: 302 LLHPVEQMRQLMT--SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + + Q+ L + K+ F + + + + + +AA + VL+ GE G Sbjct: 204 VFYDFPQIEYLENELKRDRKLDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGT 263 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAH 416 GK L++ AIH S+R P+I VNC L E G + T ++ + ELA Sbjct: 264 GKELVANAIHYASKRKDKPFIRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELAD 323 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGT+FL++I + E+Q LL+VI++ R+ + I +DV++IA T DL +++ Sbjct: 324 GGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGT 383 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR-SLEKRFSTRLKIDDDALARLVSCA 535 F LYY L+ + +PPLR RRG IP LV + + +K K+ A+ L+ Sbjct: 384 FREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYD 443 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA----TRLSTSLSFAEV 591 WPGN EL ++IE SD I DLP+++ E T S L+ E Sbjct: 444 WPGNIRELENIIERCITLSDTDYIDYEDLPQYIRNETTTVSDDDIIYLGENSELLTMEEY 503 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E + I A Q + +LG+ T+ K ++ G+ Sbjct: 504 EYKIIKAAIQRYK-SFNKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 131/453 (28%), Positives = 212/453 (46%), Gaps = 33/453 (7%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +A+L+++ DG++ D+QG ++ IN + R+ + A G+ + E+ A L +K Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRP-EAQLVSTLKD- 61 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIE-TQGTSFILLLHPVEQMRQLMTSQLG------ 318 K V + + ++ + PI + Q + + +++ L + Sbjct: 62 ---KSVRVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQ 118 Query: 319 ----------KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + +H F + + + + R+AA + FPVL+ GE G GK L +QAI Sbjct: 119 WLQQKVEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAI 178 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEK 424 H + A+ P++ +NC L E G + T +NG+L ELA GTLFL++ Sbjct: 179 HRGGKNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDE 238 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L + LQS LL+V+++G I RL A + + ++IA T +LA LV + F LYY Sbjct: 239 IGELPLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYR 298 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLE-KRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L F++ IPPLR R+ IP L L S + ++ I D+AL RL WPGN EL Sbjct: 299 LCVFQLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVREL 358 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQ---ATDDVSATRLSTSLSFAEVEKEAIINAA 600 + ++ D + S LP HL T+Q +T S E E++ I N Sbjct: 359 KNALQFALCMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNVL 418 Query: 601 QVTGGR---IQEMSALLGIGRTTLWRKMKQHGI 630 ++ + L I TL+ KMK+H + Sbjct: 419 ANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 117/503 (23%), Positives = 228/503 (45%), Gaps = 47/503 (9%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D G++TG + + D L + + L + Sbjct: 115 PVVDDNGKITGIL------------------------RQEHIRDYLYMQLEEYGITLKYI 150 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 + + +G+ + + +G + N+ + + GR I++ L + ++ +++ + Sbjct: 151 IGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLE-DTICERVLRRRIGI 209 Query: 269 KHVEATFESQ--------------HQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMT 314 V +T++ Q +F+ V T + E + SF L E+++ L Sbjct: 210 SDVYSTYKKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNLSF-ELEKTNEKLKYLQD 268 Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + F + + + +Q A++S + + GE G GK + S+AIH +S R Sbjct: 269 EVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEVFSRAIHEQSGR 328 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAV 430 G ++ VNC EF G + T + G+ ELA GT+FL++I L + Sbjct: 329 K-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGTVFLDEIADLPL 387 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 +Q+ LL+V+++ + R+ + I I+ ++I+ T DL +V++ +F LYY L+ EI Sbjct: 388 NMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFREDLYYRLNVVEI 447 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIEN 549 IPPLR R+ I L++ L + + R+ + +A L + W GN EL + +EN Sbjct: 448 KIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKGNIRELKNTVEN 507 Query: 550 LALSSDNGRIRVSDLPEHLF-TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 + + SD+ I +P ++ + + + D L + + ++E + I A +++ G Sbjct: 508 MVVLSDSSIIEKDAIPSYIVESAKNSTDDEDYPLDLTSAIEKLEIKNITKALEMSKGNKA 567 Query: 609 EMSALLGIGRTTLWRKMKQHGID 631 + + +L I RTTL+ K+ +GI Sbjct: 568 KAAKILNIPRTTLYYKLDLYGIK 590 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 111/463 (23%), Positives = 211/463 (45%), Gaps = 32/463 (6%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 T+R + +L++ +GV+ D G ++ IN + L + + G+ +TE++ Sbjct: 109 THRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIE-NTR 167 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKP---------IIETQGTSFILLLHPVEQ 308 L ++ P + Q + + + +I + + +++ Sbjct: 168 LHICVQSGIPERGYIQKIYGQPMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQRLQE 227 Query: 309 MRQLMTSQ------------LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + + + + + + + P + R+AAR VL+ GE Sbjct: 228 LSREASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVLITGE 287 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRL 412 G GK ++++AIH A GP+++VNC +A L E G + + G+ + Sbjct: 288 SGTGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGKPGKF 347 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 +LAHGGTLFL++I + + +Q+ +L+V+++ + ++ +DV++IA T L +V Sbjct: 348 QLAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPLEEMV 407 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARL 531 F L+Y L+ I +PPLR R+ IPAL+ + + L ++F +A+ L Sbjct: 408 RDGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEAMEVL 467 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT-EQATDDVSATRLSTSLSFAE 590 ++ +WPGN EL +V+E L + I LP +L T + + + + + E Sbjct: 468 INYSWPGNIRELVNVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIADQWKE 527 Query: 591 V----EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 + E+E I A G E + LGI R+TL+ K+K++G Sbjct: 528 IVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 114/466 (24%), Positives = 221/466 (47%), Gaps = 15/466 (3%) Query: 173 ADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 L ++ +E+ + L E + +L++ DG I D+ G ++ N++A Sbjct: 60 HAEILAVSGVQELTEIDLIAFEERE-----QLIETILDASSDGFIVIDKDGTIKLTNSRA 114 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 ++LR A +G++I +L P ++++A+ + + + +E +++ + + Sbjct: 115 IQILR-QAGNLEGKSIYTILPAPDIIKKALSKGIEISNHTLFYEHGGGTCHCLVSSRTLK 173 Query: 293 ETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 G IL L + +R+++ S TF + P ++ R A+++ Sbjct: 174 NEAGVIQGLILTLRDMHDVREMVYSITQARQITFNDIVTKSPSMLSVVALARNIAKNNST 233 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG 407 VL+ GE G GK L ++AIH +R P+I +NC D + E G + T + G Sbjct: 234 VLIRGESGTGKELFARAIHAAGKRHNKPFIPLNCAAIPDTLIESELFGYEDGTFTGGKKG 293 Query: 408 RLS-RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 ELAHGGTLFL+++ L+ +Q+ LL+V+++G++ R+ + I +DV++IA T Sbjct: 294 GKQGLFELAHGGTLFLDEVAELSAYVQAKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNR 353 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDD 525 +L +++ +F L+Y L+ + IPPLR IP L+++ ++ L + + + Sbjct: 354 NLEAMLKNGQFREDLFYRLNVIPLYIPPLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSP 413 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-EHLFTEQATDDVSATRLST 584 A+ +++ WPGN EL +V+E D I + +Q V+ Sbjct: 414 RAVEKMLRYPWPGNVRELSNVVERAIYLCDGRVITEDHIVFAQAAVDQPAAAVNDAIPLL 473 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E++ I A + G +++ + LG+ T L +MK+ I Sbjct: 474 REAVEATERKLIAEAIRRY-GSLRQAAKALGVTHTLLINRMKKLNI 518 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 503 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 127/472 (26%), Positives = 214/472 (45%), Gaps = 30/472 (6%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 D + + L A+ +S+ +G + DE+G + N L +D + GR TE Sbjct: 4 KDLRIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHCTE 63 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI---LLLHPVE 307 + + + + + P + + V+ PI + +L V+ Sbjct: 64 SV-VNSRMHIVARTGKPEINQSHNIIGKK----MVVQRIPIKRGGRVIAVFGQVLFKDVK 118 Query: 308 QMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + +L + L +T + + L +AA + +PV Sbjct: 119 DLSRLASELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPV 178 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-G 407 L+CGE G GK L +QAIH+ S R P++ +NC L E G + T + G Sbjct: 179 LICGESGTGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDG 238 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + + ELAH GTLFL+++ L +E+Q LL+ ++ R+ ++I D+++IA T D Sbjct: 239 KPGKFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQD 298 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDD 526 L ++ RF + L+Y L+ I IPPLR R+ I LR L + + +D Sbjct: 299 LDQMMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKS 358 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 A A L + WPGN EL +V+E + + I +SDLP +L ++ + S Sbjct: 359 AQAALRNHQWPGNVRELSNVLERTLSALNGRTIGLSDLPFYLHQDRKPLSNGGSS-SLKA 417 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 A +E+E+I +A + TG + + LLGI RT L++K+K++ I + RR Sbjct: 418 VQARIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEKEPRR 469 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 116/507 (22%), Positives = 218/507 (42%), Gaps = 45/507 (8%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D GRL G + + + + +A EV NL ++ L A+ Sbjct: 200 PIIDEGGRLLGALCVFKDITDA--------VELAEEVTNLKQVRTM----------LEAI 241 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI-TELLTLPAVLQQAIKQAHP 267 ++S D+ + DE G IN ++ L G+ T++ ++ + ++ P Sbjct: 242 IQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRRP 301 Query: 268 LKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLMTS--------QLG 318 ++ V + + ++ + P I++ + ++H V +++ L + Sbjct: 302 VRGVRMKVGPNEK--EVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAELNRARQIIRTL 359 Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 + +TF + Q + + A++ +LL GE G GK L + AIHNES+R Sbjct: 360 EAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNK 419 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 +I VNC + L E G + + + G+ E A+ G++FL++I L +Q+ Sbjct: 420 FIRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQA 479 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ I R+ + IP++V+VIA T ++ + F LYY ++ + I+IPP Sbjct: 480 KLLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPP 539 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R I AL ++ + + + +K + AL L + WPGN EL +V+ + Sbjct: 540 LRQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIF 599 Query: 554 S--DNGRIRVSDLPEHLFTEQATDDVSATRLS--------TSLSFAEVEKEAIINAAQVT 603 I LP ++ D T S++ + E I + Sbjct: 600 LNPHMEWIEKDHLPVFELEQKENDTDQGTGFDFPDIEGEKLSVAVEKFEAHLIQQTLEKH 659 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + LG+ L+ KM ++G+ Sbjct: 660 HFNRTKTAKALGVSIRNLYYKMDKYGL 686 Score = 75.5 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 9/177 (5%) Query: 168 EQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQ-LNALLESMDDGVISWDEQGNLQ 226 ++ + + +A V L+ L + + + + S DG+I D + Sbjct: 81 QRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYDRIFNSTHDGMIFIDINEEII 140 Query: 227 FINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVI 286 N A +++ GR I E++ + + +K P + + + V Sbjct: 141 LFNHMAEKMVGKKREEVIGRPIKEVIPSTK-MPRILKTRVPEYNQKQLL---GDHLQIVT 196 Query: 287 TLKPIIETQGT--SFILLLHPVEQMRQLMTS--QLGKVSHTFAHMPQDDPQTRRLIH 339 T PII+ G + + + +L L +V + Q + ++ Sbjct: 197 TRLPIIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEAIIQSSDEAISVVD 253 >UniRef50_D0I9V7 Sigma-54 dependent transcriptional regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V7_VIBHO Length = 625 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 136/640 (21%), Positives = 254/640 (39%), Gaps = 44/640 (6%) Query: 13 SPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE-YMAP 70 +I SW RC ++ + + + K ++ Q + +E + Sbjct: 9 DEVIEASWRRCRSFGLNPKSTPSIVRLNNGDWQDAQDKSKDLIVTTQEQVLPFYENILIN 68 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D +LSR G P + Q+ + F GT E GT A+ A + ++V Sbjct: 69 SNSLVLLADSRGNLLSRWGRPGFINQMESHLFEQGTSWLERFNGTNAIGTALQTCESVVV 128 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+H+ A P+F+S+ L G + ++ T+ + + + V N L+ Sbjct: 129 ARDEHYLIANRYMTASAAPIFNSEQELVGVLNISSDAYLPTSHVNGMVKMMTQSVENQLI 188 Query: 191 TDSLLAETNRHLNQLNALLESMDD-------GVISWDEQGNLQFINAQAARVLRLDATAS 243 + L+ + + +D G++ ++ G + N +A ++ Sbjct: 189 MSTY------RLHYYTLVFNTSEDNHTSQWSGLLVFNHSGEIVAANRRADLLVG---HVL 239 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 +G I + + + A + L F + + P T + I L Sbjct: 240 KGLNIETVTGISPLKLSAHPENQTLS-----FLGIANYRLFGMLKHPTATTFRVAHIPLS 294 Query: 304 HPVEQMRQLMTSQLGKV-SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 PV ++ + L + + + + D ++ I A S P+++ G G GK Sbjct: 295 APV--IKSVSKPSLARNGARCLSELDLGDLNMQKAIRQAASVANSDIPLVIQGPTGAGKE 352 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGG 418 + ++A+H S RAA ++AVNC + E G G T G + + A GG Sbjct: 353 VFAKAVHASSNRAAKKFVAVNCAAIPAELVESELFGYVKGAFTGASNKGSIGYIRQADGG 412 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TL L++I + + +Q+ LL+V+++ +T L + P+D +VI+ T L V Q F Sbjct: 413 TLLLDEIGDMPMHVQARLLRVLQEKSVTPLGSTESFPVDFRVISATHQPLRTSVAQKAFR 472 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYY ++ + +P L R I +LV+ L L + + L WPG Sbjct: 473 EDLYYRINGLTLFLPALAERT-DITSLVDTLLPELAD--GKYPPVSREVLNLFKHHPWPG 529 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE------ 592 N +L + + SD I+ LP+ F + EVE Sbjct: 530 NIRQLVNTLRVALALSDGHIIQSHHLPDDFFLDLKEASQIVQSTGEP----EVETLKVTS 585 Query: 593 -KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +E++ +T G I ++ + G+ R T+++++K GI Sbjct: 586 WRESLPELFAITEGNITRIAEISGVSRNTIYKRLKVLGIK 625 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 112/474 (23%), Positives = 226/474 (47%), Gaps = 29/474 (6%) Query: 183 REVGNLLLTDSLLAETNRHLNQLNA----LLESMDDGVISWDEQGNLQFINAQAARVLRL 238 R++ ++ D L E ++ +L A +LE+M + V + +G + + N + + + Sbjct: 113 RKIIGIVHLDDLNNELYTNVEELYALQDRILENMHEAVCITNNKGVVIYWNKSSEDLYGV 172 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVE--------------ATFESQHQFIDA 284 G+ + A++ + +K + +V F S+++ I Sbjct: 173 KRQEIIGKYLGSFFP-NALILKVLKNPRKITNVNNEPSPGKTVILSAVPIFNSKNKLIAV 231 Query: 285 VITLKPIIETQGTSFILLLHP--VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 T + I E S L+ VE ++ +++F+ + + I + Sbjct: 232 ASTDRDITEVISLSKELMQEKKKVEFFESAYKKEIA-SNYSFSSIIGKSQKIIENIAIAK 290 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---G 399 + A +S VL+ GE G GK + ++AIH S R G ++A+NC + E G G Sbjct: 291 KVAPTSASVLITGESGTGKEVFAKAIHKASGR-TGNFVAINCSAIPENLFESELFGYVGG 349 Query: 400 DRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T + + G++ + E A+ GTLFL++I + + +Q+ LL+V++ GV+ R+ +++ ++ Sbjct: 350 TFTGSLKEGKIGKFEFANNGTLFLDEIGDMPLSMQAKLLRVLQDGVVYRIGSQKGTKVNC 409 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 +++A T DL ++++N F L+Y I +PPLR RR I ++ + + ++ Sbjct: 410 RILAATNRDLQSMIKENTFREDLFYRFAVVHIELPPLRERRDDIKDFIDLFINQISEKEG 469 Query: 519 TRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDD 576 ++ ID + L S W GN +L +V+E + + S NG + +S +P H+ + + + Sbjct: 470 IKINTIDKEVYDILCSYKWEGNIRQLKNVVERMVVLSTNGEVTISSVPNHIVQDVEEIEG 529 Query: 577 VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 S R + EK+ I ++T G ++ + +L I R+TL+ K+ Q+ + Sbjct: 530 ESHHRYDLNEVVKNTEKKIIKEVMEITKGNKKKAAEILNIKRSTLYYKLNQYDL 583 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 125/458 (27%), Positives = 217/458 (47%), Gaps = 18/458 (3%) Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 + L D +E + ++ A++ ++ +G++ D G L IN A ++L + A G Sbjct: 174 TAVELADQRRSEIEKR-QKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDVIG 232 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLH 304 ++I ++ L K+ PL +V + + ++ P++ + + + + Sbjct: 233 KSIDKVAP-EIKLDDVFKRGKPLLNV----AQKTKQGMLLVNRIPVVHQGELIGAVATIQ 287 Query: 305 PVE-------QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + +R + S+ TF H+ + +LI + A++ +L+ GE Sbjct: 288 DAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGET 347 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLE 413 G GK L +Q+IHN S R P++AVNC ++ L E G + T + G+ E Sbjct: 348 GTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLFE 407 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LAH GT+FL++I +++ LQS LL+V+++ + RL + +IPIDV++IA T DL +V+ Sbjct: 408 LAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMVK 467 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 F + LYY L+ I +PPLR R +P L L++ + K+ L L Sbjct: 468 DGLFRQDLYYRLNVLSIELPPLRERLDDLPDLFRFFLKNYKLDKQLIEKVLSIMLPVLCH 527 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 WPGN EL ++ E +++ L E + + E+ Sbjct: 528 HNWPGNIRELENIAERVSVLLKAHVTMDEVLAEVKKELFGSHIEILDSTDLTKEVENWER 587 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + I+ + G + +ALLGI RTTLWRK+K +GID Sbjct: 588 QRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGID 625 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 125/520 (24%), Positives = 219/520 (42%), Gaps = 56/520 (10%) Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIA 182 ++ + V + L + A+ L+D +G G + Sbjct: 81 VTNREVTIKNAE---DKLIPVSVSASILYDDEGNPIGGV--------------------- 116 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 ET R + ++ A+++S+ DG+ + DE ++ N A + + A Sbjct: 117 --------------ETLRSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQE 162 Query: 243 SQGRAITELLTLPAV-----LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + GR E+ A + +AI ++ + + + ++ + + G Sbjct: 163 AIGRPCYEIFKSEACTGACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAGN 222 Query: 298 --SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + + + + + + ++F + +P RRL A S+ V L G Sbjct: 223 VMGGVETVRDLTPITAIKEEI--REKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNG 280 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRL 412 E G GK L ++AIH+ S R GP + VNC + L E G G T R RL Sbjct: 281 ESGTGKELFARAIHDLSPRREGPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRL 340 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 EL +GGT FL++I L + LQ LL+V++ L AR I DV+ I T +L +V Sbjct: 341 ELCNGGTFFLDEIGDLPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMV 400 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARL 531 + F + LY+ ++ + IPPLR RR IP LV+ L+ ++ +++ + + L L Sbjct: 401 AEGTFRQDLYFRINIVTLNIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLL 460 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV 591 ++ ++PGN EL ++IE + I + LP + + + R + A++ Sbjct: 461 LTHSFPGNVRELLNLIEQSVILCRGTEITLDHLPTNFLGQSHEQAQNTRRSGKIPTAADL 520 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 G E++ L I RTTLWR MK+ G+ Sbjct: 521 N-----ALLSRYSGNRAEVARELNIDRTTLWRWMKRLGVK 555 Score = 72.8 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 54/124 (43%), Gaps = 8/124 (6%) Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL-----TL 254 L + +++S+ DGV + D ++ N A + + + GR E+ Sbjct: 8 EQLKYFSHIMDSVADGVFTVDRDMHVIAFNRAAELMTGIKRADAVGRPCHEIFRTSVCDN 67 Query: 255 PAVLQQAIKQAHPLKHVEATF-ESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQ 311 +++A+K+ P+ + E T ++ + I ++ + + +G + L ++++ Sbjct: 68 GCPVREAMKKGKPVTNREVTIKNAEDKLIPVSVSASILYDDEGNPIGGVETLRSMKRIYA 127 Query: 312 LMTS 315 +M S Sbjct: 128 IMDS 131 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 134/501 (26%), Positives = 215/501 (42%), Gaps = 23/501 (4%) Query: 143 WAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLA-ETNRH 201 P D+ R T A ++ L +A A +L + L E R Sbjct: 77 LLVTGNPSLDTASRAVSTGAFEYLIKPVERDALLAAVARAHAHKSLQDERAALHDELQRL 136 Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT-----LPA 256 L A+ S+ D ++S G + IN VLRL +GR E+ L Sbjct: 137 RAHLEAIFRSVPDVLVSVGRDGRVVRINDAGLGVLRLSGEEVEGRHWQEVFGEWESQLGD 196 Query: 257 VLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLM 313 VL+ A++ + + ++ P+ G +L+L + ++ Sbjct: 197 VLRHALESRQRVPRRRVNITVDEGASQVFEVSASPLRGETGDYLGAVLVLRDISRLAACC 256 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + P +R+ H A + VL+ GE G GK L+++A+HN Sbjct: 257 PPGGAPGEW---GLVGLSPAMQRIYHLLEDLAPTDTTVLVTGESGTGKELVAEALHNAGP 313 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430 RA GP I VNC + L E G G T R+ R +LAHGGT+FL++I L+ Sbjct: 314 RATGPLIKVNCAALPETLLESELFGHVRGAFTGALRDRVGRFQLAHGGTIFLDEIGDLSP 373 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 ++Q LL+V+++ R+ R +DV+VIA T +L V F LYY L E+ Sbjct: 374 QVQLRLLRVLQEREFERVGDTRTTRVDVRVIAATHRNLRERVASGLFREDLYYRLRVVEL 433 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIEN 549 +PPLR R + L + + ++FS + + A L++ +WPGN EL +E+ Sbjct: 434 HMPPLRERHEDLALLAEHFVGVFNQQFSRCVMGFTEAASRALMTHSWPGNVRELRHAVEH 493 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 + RI ++DLP + +A+ A R + A+ A + GG Sbjct: 494 GFILCKGERIDLADLPPDVQGTEASVFPRAERSGVHEA-------AVREALKKAGGNKAR 546 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + LLG+ R TL+RK+ ++GI Sbjct: 547 AARLLGVARQTLYRKLAEYGI 567 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 120/504 (23%), Positives = 222/504 (44%), Gaps = 22/504 (4%) Query: 143 WAFCATPLFDSKGRLTGTIALACP-------VEQTTAADLPLTLAIAREVGNLLLTDSLL 195 +A P+ G G I L +E + + +A + N L Sbjct: 92 FAEVCCPIIC-DGVSHGVIGLIAFTKEQAQIIENNKSGLINFLGKMADLISNKLKAQIKT 150 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 E +L LL +MD V+S D G + N++ + + + G+ I + L Sbjct: 151 YELELEKKKLETLLNNMDKAVVSIDVDGKIDKYNSKFKELFNIK-DSITGKNI--FVELD 207 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMT 314 + + +I K ++ + + I+ + + +++ + Sbjct: 208 FIKKPSINNFKKDKSCSFFYKRYGYDSKGIYNINKIVLKNELKGYVIDFIDKRDAIKNYN 267 Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 ++ + R A++S+ VL+ GE G GK L ++AIHN S R Sbjct: 268 KMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNR 327 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTLFLEKIEYLAV 430 P+IAVNC D L E G + T + G +L E+AH G++FL++I +++ Sbjct: 328 VDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSL 387 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 LQS LL+V+++ + ++ ++ + IDV++IA T DL +V+ F LYY L+ I Sbjct: 388 HLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPI 447 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIEN 549 +P LR R+ IP ++ + ++ K+ + ID + ++ WPGN EL ++IE Sbjct: 448 KLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEY 507 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA---QVTGGR 606 S + I ++ +P+ + + + + + + E+EK II A + Sbjct: 508 SVNMSSSSIITMNVIPQKI--KNTSVEELEVKSDRIIPLDELEKIEIIKALNKYKDYKKD 565 Query: 607 IQEMSALLGIGRTTLWRKMKQHGI 630 + + LGI R TL+RK++++ I Sbjct: 566 KELTAKALGISRATLYRKIEKYNI 589 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 112/453 (24%), Positives = 205/453 (45%), Gaps = 22/453 (4%) Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 R +L +L+ + +G+I+ + + IN AA++ + + L A + Sbjct: 81 ERREQELKTILDLVSEGIIAVNTNHKVTHINEVAAQIFHTTPEEALNQDAELLFEADAPI 140 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQ 316 + +K P E + I + + PI+ +G ++ + Q+ +L++ Sbjct: 141 FETLKTGIPYSLKERKIRKNQKLIHFLTSGVPILNKRGQIIGGVMTIKDFRQVEELLSKV 200 Query: 317 LGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 K S F + + + R LI + AR + +LL GE G GK L ++AIH ES R+ Sbjct: 201 ERKPQSINFDSIIYESRRMRDLIETAKTVARGTSTILLRGESGTGKELFAKAIHAESPRS 260 Query: 376 AGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVE 431 +I +NC D L E G + T + G+ E AHGGTLFL++I + + Sbjct: 261 RQAFIPINCAALPDTLLESELFGYEEGSFTGATKGGKKGLFEQAHGGTLFLDEIGEITPQ 320 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q LL+V+++G I R+ + IP+DV++IA T +L L+++ +F LYY L+ + Sbjct: 321 VQVRLLRVLQEGTIRRIGGSKEIPVDVRIIAATHRNLEELIDKGQFREDLYYRLNVIPLH 380 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENL 550 IP LR R IP + R + ++ + + ++ L + WPGN +L +++E + Sbjct: 381 IPSLRERPEDIPLIAQVLTRKIARKLGKSEVHLTKESADLLRAQKWPGNVRQLENLLERI 440 Query: 551 ALSSDNGRIRVS------DLPEHLFTEQATD-------DVSATRLSTSLSFAEVEKEAII 597 + N I+ DL L ++ + A+VE++ ++ Sbjct: 441 INLNSNSEIKPDSFYEWGDLTPALPVSESENTAHQLIIPFGEPWPPLKDIVAQVERQVLL 500 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +LG+ TT+ KM +G+ Sbjct: 501 KVLAEHPSSR-KAGKILGVSNTTILNKMNSYGL 532 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 124/503 (24%), Positives = 224/503 (44%), Gaps = 35/503 (6%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALL 209 +F+ K +LTG + + L + R + N T+ LAE +L +++ Sbjct: 106 IFNQKQKLTGVLT-----------RIDLINKVHRALEN---TEDKLAEAFETNQRLRSII 151 Query: 210 ESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL-LTLPAVLQQAIKQAHPL 268 E+ DG+I D QG +Q +N+ R L+ + G ++ ++ L + + ++ Sbjct: 152 EASYDGIIVVDSQGVVQMVNSSYFR-LQDSSHDPAGTSLEQIPLDCHDDVIKVFQEVMQQ 210 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVSHTFA- 325 V + IT PI++ Q ++ LH ++ QL Q + S Sbjct: 211 GKVAFARYQGENLSELTITGSPILDDQNSPVHVVISLHDFTELNQL-RLQSARYSEELKS 269 Query: 326 -------HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 + D R++ + + VL+ GE GVGK ++++ IH S RA GP Sbjct: 270 LRTKNQKDLIFHDTAMERVVKKALRVSEVDSTVLITGESGVGKEVIARTIHRNSPRAEGP 329 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 +I +NC + L E G + T + G+ +ELA+GGTL L+++ L + LQ Sbjct: 330 FIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGMMELANGGTLLLDEVGDLPLNLQV 389 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+ +++ I R+ R + ++V+++A T +L ++ + +F L+Y L+ I IPP Sbjct: 390 KLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLFYRLNVVPIHIPP 449 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 LR R+ I L + L +++ + WPGN EL +++E L + S Sbjct: 450 LRERKSDILPLSMHFLEKFNNKYNFHRLFSSEVFKLFEQYPWPGNIRELANLVERLIIMS 509 Query: 555 DNGRIRVSDLPEHLFTEQATDDVS---ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + I LP F + +T + + + +VE E I+ A + ++ Sbjct: 510 EQETIYPDQLPPTFFGKPSTSPLQISIDEIIPLKEAREQVESELIVKALKQYR-SLRRAG 568 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQ 634 LG+ +TL RK + GI + Sbjct: 569 DALGVAHSTLLRKARALGISVEE 591 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 110/448 (24%), Positives = 201/448 (44%), Gaps = 19/448 (4%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI-----TEL 251 E +H +L A+ S+ D +++ D+ + N AA + + A + Sbjct: 143 ELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNVKNNPFALCPTDCC 202 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPIIETQGT--SFILLLHPVEQ 308 VL + +K+ ++ + + + V ++ P+ G +L++ + + Sbjct: 203 QACRDVLAETLKRKTAIREFQVECNHKQRPQQKVSLSSAPLESQDGEFLGAVLVIRDITR 262 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + L + + F ++ + + + A VL+ GE G GK L+++A+ Sbjct: 263 LVDLEREL--QERNQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKELVAKAL 320 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKI 425 H+ RA P+++VNC + L E G G T R + AH GTL L++I Sbjct: 321 HHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGTLLLDEI 380 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 ++ +Q LL+V+++ R+ + I +DV+VIA T DL V F LYY L Sbjct: 381 GDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFREDLYYRL 440 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + EI +PPLR RR IP L ++ EK+F+ + + D + ++ WPGN EL Sbjct: 441 NVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWPGNVRELE 500 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 IE + + I + +P + + + + E II+A + TG Sbjct: 501 HSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAAD-----EPNEIIDALKRTG 555 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + + LLG+ R T++RK++++GI + Sbjct: 556 WNKAKAARLLGVSRKTIYRKIEKYGIQS 583 Score = 44.7 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 18/171 (10%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG------- 245 LL + + + L + ++DG + D G Q+ N R++ +G Sbjct: 12 ELLEKVTQERDALLTVFLEIEDGYVECDLAGFTQYFNPALCRIVGYPPREMKGMGYKTYL 71 Query: 246 --RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 ++ + + + + + ++ ITL+ E + + ++ Sbjct: 72 DKENAQQVFRVFNEVYLTGQPKKAFNYEITRKDGSKSVVEISITLRRNKEGEPDGYRCIM 131 Query: 304 HPVEQMRQ---LMTSQLGKVSHTF----AHMPQDDPQTRRLIHFGRQAARS 347 V R+ + ++ F + D ++I +AA + Sbjct: 132 RDVTDRRKAEMELAKHKTRLEAIFRSVKDAIVTVDQDL-KVID-ANKAAAT 180 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 126/509 (24%), Positives = 214/509 (42%), Gaps = 40/509 (7%) Query: 141 WNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNR 200 PL D +GR+ G + + L+ + Sbjct: 90 HRVTRVGAPLLDDQGRVQGCVTVLQDHSPFNE---------------------LVNRIHY 128 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP----- 255 L +L+S++ G+ + + G + F N A +V G+A L Sbjct: 129 EEQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKACGTLFAGEGKQVC 188 Query: 256 AVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQL 312 L+Q + P V S Q + I P++ G + + ++QL Sbjct: 189 QALKQVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAFQDMTLVQQL 248 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + G+ + F HM DP +R+ R A++ +L+ G G GK LL++ IH+ES Sbjct: 249 NQAIKGQ--YHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHSES 306 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 R+ P++ VNC D + E G T + + R AH GT+FL++I L Sbjct: 307 NRSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRDKPGRFSEAHSGTIFLDEIGDLP 366 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + LQ+ LL+V++ L +R+ +DV++++ T L LV Q F L+Y L+ Sbjct: 367 LALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNVLR 426 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIE 548 I +PPL RRG +P L+ + +R I + A+ L++ +PGN EL ++IE Sbjct: 427 IDLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNIRELENIIE 486 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDD-----VSATRLSTSLSFAEVEKEAIINAAQVT 603 + + IR LP ++ + + + S E++ I++ + Sbjct: 487 HAIILCQEEVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQERQQILDVLRAN 546 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 Q + LLG+ RTTLWRKM++ I Sbjct: 547 RWHRQTTANLLGMDRTTLWRKMRKFKISP 575 Score = 50.9 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 6/114 (5%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA---IKQ 264 +L+ + GVI D ++ N A +LRL G E+ + Sbjct: 12 ILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPCFPTCPFHDPE 71 Query: 265 AHPLKHVEATFESQHQFIDAVITL-KPIIETQGT--SFILLLHPVEQMRQLMTS 315 ++ ++ F + V + P+++ QG + +L +L+ Sbjct: 72 TSDVRDMDVEFLDEAGEKHRVTRVGAPLLDDQGRVQGCVTVLQDHSPFNELVNR 125 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 115/472 (24%), Positives = 215/472 (45%), Gaps = 33/472 (6%) Query: 199 NRHLNQLNAL----LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 N+H+ Q + L+ + DGV D + + ++N ++ L G + +L Sbjct: 15 NQHMLQHECVYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYEDVVGHYVDDLEAK 74 Query: 255 PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL-----LHPVEQM 309 + ++ ++ +IT KPI + ++ + +E M Sbjct: 75 GIFKNSTSPHVRRENKIISSIGKAKDGVEMLITGKPIYDENNELIYVVVNQRDISDLEIM 134 Query: 310 RQLMTSQLGKVS--------------------HTFAHMPQDDPQTRRLIHFGRQAARSSF 349 RQ + K++ + D + R +I+ + A Sbjct: 135 RQKLIVTENKMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSEEIRDVIYLINKIAPLDV 194 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN 406 VL+ GE GVGK +++ I +S R +I VNC L E G + T + Sbjct: 195 TVLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLLESELFGYEKGAFTGADK 254 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 + +LA GGT+FL++I + +E+Q LL+ ++Q + + ++ +DV++IA T Sbjct: 255 AKKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVGGTQIQKLDVRIIAATNK 314 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDD 526 DL+ V++ +F + LYY L+ F I IPPLR R+ I AL L+ K++ + + + Sbjct: 315 DLSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYFLKQYNKKYGKSVVLSSE 374 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 A + L++ WPGN EL ++IE L + SD+ + D E + D++ + Sbjct: 375 AYSLLMNYDWPGNVRELQNIIERLIIISDDQTVINKDQIEKIMFPNTMLDITKSEKGLKE 434 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 E+EKE +I+ + T G ++ + L I ++TL +K+K++GI+ + + + Sbjct: 435 IIQEIEKEILIDVLKNT-GTTRKAAKKLKIDQSTLVKKLKKYGINIDEIRHQ 485 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 115/461 (24%), Positives = 210/461 (45%), Gaps = 13/461 (2%) Query: 175 LPLTLAIA-REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAA 233 L L +A + V L ++ + + L++S+ + D+ G +Q +N A Sbjct: 95 LKLLSELACQWVAEKLERETWQKKFGEIHLETRKLIQSITEPFCLVDQDGRIQEMNEHMA 154 Query: 234 RVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 + R T G IT+ +T ++IK T++ + Sbjct: 155 SLFRKRRTTLMGEKITQYITKEK--WESIKSGKEKDETVVQVPRIKGE-AYFATIQLVKN 211 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 QG ++L ++ + Q G+ + F + ++ I ++ ++S ++L Sbjct: 212 KQGIVSYMILLKSKKTEK--PEQAGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTIML 269 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLS 410 GE G GK + +QAIH+ESER P++A+NC + L E G + T E + Sbjct: 270 RGESGTGKEMFAQAIHHESERKNQPFVALNCAAIPENLLESELFGYEKGAFTGAEKEKPG 329 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 R ELA+ GTLFL++I +++ LQ+ +L+V+++ + R+ + + IDV++I T +L Sbjct: 330 RFELANHGTLFLDEIGDMSLYLQAKILRVLQEKTLERIGSNKSRKIDVRIITATHRNLEE 389 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALA 529 L+ + F LYY + I IPPLR R+ +P L+ + ++ K + K + + L Sbjct: 390 LIRKGEFREDLYYRISVIPIYIPPLRARKEDLPILIEHFIQKFSKDLNRDSKNLAAETLD 449 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 RL+ WPGN EL +V+ + + + LP L + S T+ Sbjct: 450 RLMQYDWPGNIRELQNVVRHFVELQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHYQT 509 Query: 590 EVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQ 627 +EK ++ + G ++ +A LGI TL+R +K+ Sbjct: 510 RLEKRKVLELLERNGWSTEGKKKTAADLGISLATLYRYLKK 550 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 117/467 (25%), Positives = 204/467 (43%), Gaps = 33/467 (7%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 L N + + ++++ D V D + ++ A ++ ++ G+ IT Sbjct: 5 LYKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFD 64 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ------------------ 295 + + ++ H K + A F + +I P+ Sbjct: 65 YKDL--EILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVAL 122 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + H + ++ Q + + S F M P +R I R+ VL+ G Sbjct: 123 NEKLFNMSHEMHRLEQEVAKYKDE-SDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILG 181 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSR 411 E GVGK + ++AIH SE A P+I++NC +A E G +R N G+ + Sbjct: 182 ESGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGK 241 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 +ELA GGTLFL++I + +++Q LL+V+++ R+ + I ID ++IA T DL Sbjct: 242 IELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEE 301 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530 + + F LYY L+ + IPPLR RR I L + L ++ ++ + + Sbjct: 302 MRKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHE 361 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-------EHLFTEQATDDVSATRLS 583 L+ WPGN EL +V+E L + + +G I+ LP ++ + T LS Sbjct: 362 LLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILS 421 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E EK+ I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 422 LQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGL 468 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 116/476 (24%), Positives = 206/476 (43%), Gaps = 33/476 (6%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + + + L N + + ++++ D V D + ++ A ++ ++ Sbjct: 80 ITSQQMIPFLYKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEII 139 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ--------- 295 G+ IT + + ++ H K + A F + +I P+ Sbjct: 140 GQPITRFFDYKDL--EILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSE 197 Query: 296 ---------GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 + H + ++ Q + + S F M P +R I R+ Sbjct: 198 TDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDE-SDPFLAMNGKSPVIQRTIQLARKVCS 256 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD--- 403 VL+ GE GVGK + ++AIH SE A P+I++NC +A E G +R Sbjct: 257 VKSTVLILGESGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSG 316 Query: 404 -NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 N G+ ++ELA GGTLFL++I + +++Q LL+V+++ R+ + I ID ++IA Sbjct: 317 ANSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIA 376 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T DL + + F LYY L+ + IPPLR RR I L + L ++ ++ Sbjct: 377 ATNRDLQEEMRKGTFREDLYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIR 436 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-------EHLFTEQAT 574 + + L+ WPGN EL +V+E L + + +G I+ LP ++ Sbjct: 437 DLPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLL 496 Query: 575 DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + T LS E EK+ I A ++ G E + LG+ R TL+ ++K+ + Sbjct: 497 LSNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLRL 552 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 500 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 225/498 (45%), Gaps = 35/498 (7%) Query: 160 TIALACPVEQTTAADLPLTLAIA--REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVI 217 + ++ + + L ++ A A + + + + QL +L + DGVI Sbjct: 154 ALVVSKLLLEVREVRLIMSGAEAVCEAIEEAQRIIKVQDKEKKSAEQLRTILSFIHDGVI 213 Query: 218 SWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES 277 + D G + IN A + +L T G+ I +++ +L +K E Sbjct: 214 AIDNTGKITVINPSAESIFKLKNTQVIGKNIKQVIPNTKML-DVLKHGK----AEIEQLQ 268 Query: 278 QHQFIDAVITLKPI-IETQGTSFILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQ 329 V PI I + + +++R + SQ ++F ++ Sbjct: 269 NTPSGMVVTNRVPIEINGEIMGVVATFKEAGRIQQTEQKIRTKLYSQGLYAKYSFENIMA 328 Query: 330 DDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD 389 DP+ RR+I ++ AR+ VL+ E G GK L +Q+IH S R GP++A+NC Sbjct: 329 WDPEMRRIIERAKRYARTDGTVLIEAESGCGKELFAQSIHQASSRCRGPFVAINCSALPT 388 Query: 390 AALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVI 445 L E G G T + G+ +ELAHGGTLFL++I + + LQ+ LL+V+++ + Sbjct: 389 QLLESELFGYVEGAFTGARKEGKPGLIELAHGGTLFLDEIGDMELTLQARLLRVLEERQV 448 Query: 446 TRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL 505 RL A + +P+D++++A T A L V + +F L++ L+ ++IPPLR RR I L Sbjct: 449 MRLGADKWLPVDIRIVAATNAPLKQRVLRGQFRMDLFHRLNVLNLSIPPLRHRREDIIPL 508 Query: 506 VNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL 564 L ++ +++ A L+ +WPGN EL +++E ++L + + + L Sbjct: 509 AEYFLAEFANKYGQRPIELTAAAKDILLRYSWPGNVRELRNIMERISLVYEEAQDVSAIL 568 Query: 565 PEHLFTEQATDD---------------VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 + L ++ V+ R S +++++ I+ GG + Sbjct: 569 RDFLGNSDYCNNSDYSTLELAKTGMLAVTPERFLLPQSIRDMKRQLAISTLAACGGNKSK 628 Query: 610 MSALLGIGRTTLWRKMKQ 627 + LGI R TL R ++Q Sbjct: 629 AAKQLGITRATLDRLLRQ 646 >UniRef50_Q2S6Z3 Transcriptional activator of acetoin/glycerol metabolism n=4 Tax=Gammaproteobacteria RepID=Q2S6Z3_HAHCH Length = 648 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 131/639 (20%), Positives = 249/639 (38%), Gaps = 37/639 (5%) Query: 13 SPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQ-AALEDAWEYMAP 70 LI SW RC + + +++ + ++ Q L ++ Sbjct: 22 KELIEDSWRRCKEYGLTHNSVPQYGVLGRGGVSALLEEHQLLVNTTQKEVLPYYDHILSN 81 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 C + + D +L+ G+ + A G G E GT A+ A +G AV+ Sbjct: 82 SNCLIVLADRRGHVLNTWGEQRFTPLECAHGLVVGNRWTEMGAGTNAIGTAIATGAAVQV 141 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+HF + A P+F+++ + G + ++ L + + V N L+ Sbjct: 142 GRDEHFLRANRFMVGSAAPIFNTQKEMVGVLDISSDAYLPQDHTLGMVKLMTLSVENRLI 201 Query: 191 TDSLLAETNRHLNQLN-ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 ++ E N A LES G++ D +G + N +A +L D + I Sbjct: 202 HNAFQREHLLITFNTNIAALESPWSGLVVIDVEGRIISANRRAEVMLAHDLALA---NIE 258 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 ++ + + P++ + +I P + P + Sbjct: 259 DIFNCKLRELRHHPEGMPMEVSAL----GKYRMHLMIKRPPQAAIIAPDYRKKEKPAPVI 314 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + +L F + D + R+ + P+L+ GE G GK + +++H Sbjct: 315 ---VEEELPDDVIPFHELEHGDERVARMAKQANRIMEKDIPILIHGETGSGKEIFVRSLH 371 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 S R A P +AVNC + E G + T G + + AH GTLFL++I Sbjct: 372 YHSSRKAFPLVAVNCAAIPAELVESELFGYEKGAFTGASNKGSIGLIRKAHRGTLFLDEI 431 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + +++Q+ LL+V+++ +T L + P+D+K+I+ T L V++ F LYY + Sbjct: 432 GEMPLKVQARLLRVLQERCVTPLGSTETFPVDIKLISATNRVLKEEVKRGAFREDLYYRI 491 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + +PPLR R L+ L + + D L LV WPGN +L Sbjct: 492 SGLNLELPPLRER-ADKAKLIEYVHGRLTRSAGETYHPLSLDVLNMLVDHPWPGNVRQLI 550 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTE---QATDDVSATRLSTSLSF------------- 588 S++ +D I +P+ + + + + LS + + Sbjct: 551 SILSVALAMADGDPIEDWHIPDDFYDDLNGLGLAEHNGDGLSEGMDYVDHHNDGPILRNP 610 Query: 589 -AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E+E + I+ + GG + + + G+ R T+++ ++ Sbjct: 611 KEELEAK-IVRLYREYGGNVSQTAKAAGVSRNTVYKYIR 648 >UniRef50_B1Y1U6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1U6_LEPCP Length = 659 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 134/650 (20%), Positives = 256/650 (39%), Gaps = 31/650 (4%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRK---KAMLTLG 57 + G ++ + SW R E + + +T A + R+ + M Sbjct: 14 LEGKRPIQMPNVNAGLLASWMRSVTEHGLEPDRI-QEPDVLTHAELLERRAPIEEMSAFS 72 Query: 58 QAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCA 117 ++ +++++ + + D ++ + + SAL G+ +E GT Sbjct: 73 SPEIDRLYQHLSDHAQVVMLSDAQGVVIHFRSNSTVVDTCSALRVLPGSIWSEDKQGTTG 132 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD--- 174 + L + + + +HF L + P+F ++GRL G + + A Sbjct: 133 VGLCLREQKPLSIVMAEHFATKLAGLSCTVAPIFGAEGRLVGVLNVTAMRSTDHALQGVV 192 Query: 175 LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAAR 234 + AR + N+ L++ + ++ + ++ D+ G + A R Sbjct: 193 REMVANSARRIENVFFDRRHARARILRLSRHDDFCDAAAEARLALDDNGRIIDATPPALR 252 Query: 235 VL-----RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLK 289 +L GR ++ ++ + V + L+ T + I +T Sbjct: 253 LLTGSTLNDRPDVLIGRKLSSIVDVGNVERL-------LQEAAPTINGKQGCIHVRVTEP 305 Query: 290 PIIETQGTSFILLLHPVEQMRQLMTSQLG---KVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 P I +L ++ S G V+ T + D + ++ Sbjct: 306 PRRAASRAPQIDMLSRASRLAASTLSTSGTRASVAPTLEEIVGSDTAMLDRLRIAQRLHA 365 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD 403 P+LL GE G GK L++A+H + +G ++A+NC + E G G T Sbjct: 366 RCLPLLLQGESGCGKTQLARALHEDGPHRSGGFVAINCAAIPQELIESELFGHRSGAFTG 425 Query: 404 N-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G RL A+ GTLFL++I + + LQ LLQV+ +G + A + + + +I+ Sbjct: 426 AAKQGAPGRLLGANDGTLFLDEIGDMPLGLQGRLLQVLSEGEFVPVGATQPVKVRFALIS 485 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRL 521 T DL LV++ RF LYY L + +PPLR R + L+ Sbjct: 486 ATLRDLKSLVQEGRFREDLYYRLSGATLALPPLRERT-DLGQLIERAFARAALEAGIEES 544 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSAT 580 ++ A L+ WPGN EL V + A +D+ I + LP L + A T Sbjct: 545 RLSQAARDVLLRHRWPGNIRELQHVAKFTAAINDSEVIGLDALPASLIEQADARHPAGQT 604 Query: 581 RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 R + + + ++ E ++++ + + + +A LGI R TL R++ + + Sbjct: 605 RPAATRTVSDAE--SLLDLMEQSHWNVSAAAARLGISRATLHRRLNEFDV 652 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 109/469 (23%), Positives = 221/469 (47%), Gaps = 34/469 (7%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 ++ ++ L +L+S + + D + + ++N L + +QG+ + +++ Sbjct: 9 SDEMVDFLIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIP-NTR 67 Query: 258 LQQAIKQAHPLKHVEATFESQHQFID---------AVITLKPIIETQGTSFILLLHPVEQ 308 LQ +K P + ++ ++ + ++ F L+ +++ Sbjct: 68 LQVVVKTGIPELGKVQNINGRRAIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELVSKLKE 127 Query: 309 MRQLMTSQLGKV---SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 +L ++ F + P + ++ A V++ GE G GK LL+ Sbjct: 128 EVDCYKRELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSGKELLA 187 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLF 421 +IH+ S R++ P++ +NC + + E G + T+ + NG+L +LE+A+ GT+F Sbjct: 188 HSIHSASTRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIANNGTVF 247 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +Q+ LL+ +++G + ++ + + + ++V+VI T ++ +VE F L Sbjct: 248 LDEIGDMPPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGIFRADL 307 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGND 540 YY L + + IPPLR R I L ++ L+S+ ++++ L KID +AL L + WPGN Sbjct: 308 YYRLSSIILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYYWPGNV 367 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST---------------- 584 EL ++E L +D I+ LP +LF + + + L Sbjct: 368 RELQHLLETLCCITDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGNNKYIC 427 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 S EKE + + TGG ++ + +LGI RTTL+ K++++ + Sbjct: 428 SDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQYK 476 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 117/470 (24%), Positives = 211/470 (44%), Gaps = 28/470 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + + L+T E + + L +LE+ D+ VI D +G + +IN A + + Sbjct: 11 SLESRLITTEYFKEWDAQI--LLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKL 68 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE--TQGTSFIL 301 GR + ++ +L+ ++ + E + + ID+V P+ + + Sbjct: 69 MGRNLYDIEPQAKLLR-VMEDGGGRDNDEVEYI-KSLNIDSVGLAFPLYDSRKEKVGACA 126 Query: 302 LLHPVEQMRQLMTS---------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 + V Q+ +L + ++ +F + ++ + + A Sbjct: 127 IFKDVTQVVELTRKLQKSKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVAN 186 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD 403 ++ +L+ GE GVGK ++++ IHN S R P I VNC + L E G + T Sbjct: 187 TNCTILIQGESGVGKEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTG 246 Query: 404 N-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G+L + ELA+ GT+ L++I +++ +QS LL+V+++ + R+ + I +DV+VIA Sbjct: 247 ARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIA 306 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T +L +VE+N F LYY LH I IP LR RR I LV + T Sbjct: 307 ATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEGTD-- 364 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL 582 + A L WPGN EL +VIE + + + D P++L + A D + Sbjct: 365 LTPGAARMLEEYGWPGNVRELQNVIEYAMIVKTGDILEIKDFPQYLRGDGAEDGPAEDGP 424 Query: 583 -STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + ++EK I A + G LG+ R + + K++++G+ Sbjct: 425 CRLKDAVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGLK 474 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 129/520 (24%), Positives = 225/520 (43%), Gaps = 57/520 (10%) Query: 116 CALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADL 175 C L L ++V+ + V W+ PLF+ Sbjct: 51 CPLKLVLEERESVQVYDIKTNTDVHACWSMS--PLFNGD-------------------KC 89 Query: 176 PLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV 235 + + ++V N++ S + E+ R +L S+ + ++ DE G + N A ++ Sbjct: 90 EGVVEVFKDVSNVV---SCILESQRQKTYKETILNSIVEAILVLDENGYIVEHNNIAKKM 146 Query: 236 L-RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 L R + GR I EL+ L L++ Q + + E+ A + P+ Sbjct: 147 LCRTSEESLIGRHIKELVNLS--LEEFPPQG---ERTDVYIETPCGRQKASTLVSPM--N 199 Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 G +++ + ++Q + ++ P ++++ + + + VL+ Sbjct: 200 LGFGYVVSFYVIQQDNMSFCDK-------LDYIFTKSPTFQKVLDLVKSCSEHNVNVLIE 252 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSR 411 GE G+GK+LL++ IH S R P++ VNC + L E G T + + Sbjct: 253 GETGIGKSLLAKYIHLLSPRRDAPFVKVNCAAIPENLLEAELFGYVKGAFTGATKDKPGK 312 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E+A GGTLFL++I + + LQ+ +L ++++ RL + + ++IA+T D+ L Sbjct: 313 AEIADGGTLFLDEIGDMPLSLQAKILHLVEEKEFERLGSNTPRKTNTRIIASTNKDIKEL 372 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530 + Q RF LYY L I +PPLR R+ IP L+NN + K +S R+K I DA+ Sbjct: 373 MRQGRFREDLYYRLSVVNIYLPPLRERKEDIPLLINNFIEKYSKLYSKRVKSISGDAIKM 432 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L+ +PGN EL +IE ++ I + D+ + + Sbjct: 433 LLGYDFPGNIRELEHIIEKAVITCRGSIINIEDISLDFQSNNHK--------------QQ 478 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EKE I + + +LGI RTTLWRK+K+ GI Sbjct: 479 EEKERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKLKELGI 518 Score = 42.4 bits (99), Expect = 0.054, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 43/119 (36%), Gaps = 10/119 (8%) Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL--PAVLQQAIKQ 264 ++L+ + DGV+ + + N A ++L + L ++ L+ +++ Sbjct: 4 SILDELLDGVLVIGLDYKIVYANDSAKKLLDVKEND----FCKGLFSICNSCPLKLVLEE 59 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLLHPVEQMRQLMTSQLGKVSH 322 ++ + + + A ++ P+ + + V + + + ++ Sbjct: 60 RESVQVYDIKTNTD---VHACWSMSPLFNGDKCEGVVEVFKDVSNVVSCILESQRQKTY 115 >UniRef50_UPI0001C34ECA sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001C34ECA Length = 644 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 118/472 (25%), Positives = 213/472 (45%), Gaps = 36/472 (7%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + ++ ++++ LL + +G++S D ++ +N A ++L + + Sbjct: 183 ITAAKRAAAISRTEQEKTSRIHVLLNASKEGLLSIDSLRYIRMVNHSARKILHIS-ESIT 241 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLL 303 G + + P ++ + + + ++ + +T P+ ++ ++ Sbjct: 242 GMKVMD-APFPREFKKLLLEDTACTNEIF----KYGDMMLNVTKYPVMVQNSNMGIVVSF 296 Query: 304 HPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + + R+ + S+ F + + P R I ++ +R+ +LL G+ Sbjct: 297 QNISDIMDLENDIRRKIHSKGHVAKAHFDDIVGESPAIRSTIQTAQKYSRTDSNILLIGQ 356 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRL 412 G GK L +Q+IHN S R GP++AVNC + L E G G T + G+ Sbjct: 357 SGTGKELFAQSIHNHSMRKDGPFVAVNCAAIPENLLESELFGYTAGAFTGAQKGGKPGYF 416 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELAH GTLFL++I + ++ Q+ LL+ I++ I RL + R I +++++IA T +L LV Sbjct: 417 ELAHNGTLFLDEIGEIPLKFQAKLLRAIQEREIMRLGSDRTISVNIRIIAATNRNLEQLV 476 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 + F L+Y L I IP L RR IP L L + + ++ DDA L Sbjct: 477 REGEFREDLFYRLDVLRIEIPFLENRREDIPLLARGWL----LKHAPGTELSDDACRLLS 532 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSD-------LPEH-------LFTEQATDDVS 578 W GN +L+++ E L++ I D LP+ L E + + Sbjct: 533 QAEWNGNIRQLFNICERLSVLCSGSLIAGKDVRNVLPTLPQEPGSPALPLPAEPSLPPAA 592 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 R + S + E+E I+ A ++ +ALLGI R+TLWRKMK+ + Sbjct: 593 PFRSAEEDSPKDSERETILKALEICRYSRSRAAALLGISRSTLWRKMKEFNL 644 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 106/320 (33%), Positives = 167/320 (52%), Gaps = 5/320 (1%) Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 + + + + + +AA S VL+ GE GVGK + ++ IH SERA Sbjct: 413 NRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAARTIHYLSERADK 472 Query: 378 PYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQ 433 P++A+NC + L E G + T + G+ ++E A GGTLFL++I + + +Q Sbjct: 473 PFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLDEIGDMPLSMQ 532 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 LL+ I+ R+ + +D+++IA T LA LV++ RF LYY L+ F I IP Sbjct: 533 VKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYYRLNVFNINIP 592 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDFELYSVIENLAL 552 PLR RR IP LVN + +R KI +A+ L++ +WPGN EL +VIE Sbjct: 593 PLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRELQNVIERAYY 652 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA 612 ++ I+ LP L ++ + + + + AEVEK+ II + T + Sbjct: 653 LAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKATNYNKLACAK 712 Query: 613 LLGIGRTTLWRKMKQHGIDA 632 LLGI R TL++K+K++GI+A Sbjct: 713 LLGIPRATLYQKIKEYGIEA 732 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 115/467 (24%), Positives = 212/467 (45%), Gaps = 33/467 (7%) Query: 193 SLLAETNRHLNQLNALLE-------SMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L +E + + ++L+ ++++ ++ D+ G + ++ + + +G Sbjct: 79 KLYSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINCK--DPEG 136 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 + + +++ +L + +K + ++ E + Q I I LK G ++ Sbjct: 137 KYVGDVIK-DTMLHRVLKTGN-IESGEVQKINGKQVITMRIPLKKEGRIIGAIGKIMFKD 194 Query: 306 VEQMRQLM----------------TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 V L + + + + F + D ++ + +++A ++ Sbjct: 195 VNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKSLAKKSANTNS 254 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN 406 VL+ GE G GK L + +IHN S R GP+I +NC L E G + T + Sbjct: 255 NVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGYEDGAFTGAKK 314 Query: 407 GRLSR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G ELA+GGT+FL++I + + +Q LL+VI++ + ++ L IDV++IA T Sbjct: 315 GGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILKKIDVRIIAATN 374 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-ID 524 +L LVE+N+F LYY L+ I +P LR R+ I + + ++ + R +K I Sbjct: 375 KNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVKKVSHRLGICIKGIS 434 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLS 583 +A L + WPGN EL +VIE A D+ I+ LP+ + + Sbjct: 435 KEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEILKSYIVKAPTKENKY 494 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +EVEKE I N + G + S +LGI R L++K+ ++ I Sbjct: 495 LKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNI 541 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 125/505 (24%), Positives = 232/505 (45%), Gaps = 40/505 (7%) Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNA 207 T + + +G L G I E L + L+ Sbjct: 88 TYIVNDEGELIGEIT---GKEWLHYHTT---------------ITKELKQKEEMLHLYEM 129 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA---ITELLTLPAVLQQAIKQ 264 + ++ +G+ D++G ++ N +R +++ + G+ I E LP VL+ + + Sbjct: 130 VFDTAYEGLTVVDDKGIIRLFNEAYSRYVKVPTEEAIGKDAALIIENTRLPVVLKTGVPE 189 Query: 265 AHPLKHVEATFESQHQFI-----DAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGK 319 ++ H+ V ++ + ++ +E++ + S+ K Sbjct: 190 RSQAHRLQGQNLVVHRIPIWKDNKVVAAAGILVYEGVSEIYQVIDQMEELDKTKHSKFTK 249 Query: 320 VSH------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + F + D P + R+A++S PVL+ GE GVGK +++QAIHNES Sbjct: 250 DPNKKNSLTRFEDLLGDSPCFTKTKKIARKASQSKAPVLITGESGVGKDIVAQAIHNESP 309 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG---GDRTDN-ENGRLSRLELAHGGTLFLEKIEYLA 429 G +I+VNC +A L E G G T + G+ ++ELAH GTLFL++I + Sbjct: 310 ITRGRFISVNCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIELAHKGTLFLDEIGDMP 369 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + +Q+ +L+VI++ + R+ + ID ++I T D+ +V + F LYY L+ Sbjct: 370 LTMQAKILRVIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHEGTFREDLYYRLYVIP 429 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 I IP LR R IP +V++K+ L + R ID + + + W GN EL + +E Sbjct: 430 IHIPSLRERAEDIPIIVSHKIAELNNEYGDRKTIDQLVVQWMYTQPWKGNIRELINFLER 489 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDD---VSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 L + S++ + + +LP+ + +Q ++ +++ SLS E E++ I + G Sbjct: 490 LYVLSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAESLSEEE-ERDRIKETLEHVKGN 548 Query: 607 IQEMSALLGIGRTTLWRKMKQHGID 631 + + LLGI R TL+ K+ ++ ++ Sbjct: 549 KTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 114/455 (25%), Positives = 211/455 (46%), Gaps = 25/455 (5%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL-------LT 253 ++ LN +++SM +GV + D QG + N + A+ + GR+ L Sbjct: 10 NVRFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGFSHCLGTL 69 Query: 254 LPAVLQQA--IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQM 309 PA + Q ++ P + + + + + + + G + + + ++ Sbjct: 70 CPADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNGELIGIVETVTDMTEL 129 Query: 310 RQLMTS-----QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 ++ +L ++ ++ + + R AA S VL+ GE G GK L+ Sbjct: 130 QKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGESGTGKELI 189 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLF 421 ++AIH S++A P++ VNC + L E G G T R R E AH G++F Sbjct: 190 ARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEEAHRGSIF 249 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L+ +Q LL+V+++ + R+ + ID++VI T DL L+ Q F + L Sbjct: 250 LDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQGVFRQDL 309 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGND 540 YY L F IT+PPLR RR +P LVN+ + + R+ + +A+ + WPGN Sbjct: 310 YYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFEYHWPGNV 369 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS-----ATRLSTSLSFAEVEKEA 595 EL + IE+ + + +I+V+DLP + T + + + + + + ++E Sbjct: 370 RELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGSRQHHEQPDREQ 429 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ + ++ LG+ RT +W+ MK+ GI Sbjct: 430 LLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 169/343 (49%), Gaps = 10/343 (2%) Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 S + +E+ ++ QL K + F + D PQ +R+ + A + VL+ GE Sbjct: 119 VSTAIKFKRLERENTILKKQLKK-KYRFENFVGDSPQIQRVFELIEKVADTDSTVLITGE 177 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLE 413 G GK L+++AIH S R P + +NC + L E G + T R+ R E Sbjct: 178 SGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTGAHKTRIGRFE 237 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 +A+GGT+FL++I ++ LQ LL+VI++ R+ + R + +D++++A T DL VE Sbjct: 238 VANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAATNKDLMEAVE 297 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + F LYY L+ I +PPLR R+ IP L++ + L +K I A+ L+ Sbjct: 298 KKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKRISQAAMNALM 357 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS-----LS 587 WPGN EL +V+E + + S I DLP + + + + +L + + Sbjct: 358 GHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKLPSGGIRFDHA 417 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E EK I+ A + + + LL I RTTL KMK+ I Sbjct: 418 VEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_Q9K633 Transcriptional regulator n=2 Tax=Bacillus RepID=Q9K633_BACHD Length = 559 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 217/470 (46%), Gaps = 40/470 (8%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 TD L + + L A++E DG++ D +G + ++ A L ++ + G+ +T Sbjct: 102 ETDEFLHVNDHQVELLEAMMEFAFDGLVMVDREGYITALSTDYASFLGVNQEEAIGKHVT 161 Query: 250 ELLT---LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET------------ 294 E++ + V + + L+ + + + T PII+ Sbjct: 162 EVIENTRMHIVAKSGKTEVAELQKIRGDY--------MIATRVPIIKNGQVTGAVGKVLF 213 Query: 295 -QGTSFILLLHPVEQMRQLMT------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 F L V M + + +L K ++ F+++ P + ++AA+S Sbjct: 214 KNVGGFNSLYKRVNSMEKELKRYKGEMKELNKAAYQFSNIIGSSPLLVQAKKEAKKAAKS 273 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN 404 VLL GE G GK L + +IHNES RA G ++ VNC L E G + T Sbjct: 274 DSNVLLLGESGTGKELFAHSIHNESRRAFGSFVKVNCAAIPADLLESELFGYEEGSFTGA 333 Query: 405 -ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 + G+ + E A GGT+FL++I L + +Q L+V+++ + ++ + +DV+VIA Sbjct: 334 IKGGKKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVEKIGSSTGKSVDVRVIAA 393 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T DL +V+ F LYY L+ IT+P LR R+G IP L L +R + + Sbjct: 394 TNRDLEKMVQAGEFRLDLYYRLNVMPITVPSLRDRKGDIPRLARYFLEKYRERMNMVARD 453 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATR 581 I +A+ L WPGN EL +VIE ++N IR LPE + Q V Sbjct: 454 IHPEAILALEQYEWPGNIRELENVIERAVNVAENEKMIRRCHLPEKITGVQFRSGV---- 509 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E EKEAI+NA +VT + + LL I RT+L+ KMK+H + Sbjct: 510 RPLEQVMEETEKEAILNALRVTNNNRTKAANLLQISRTSLYEKMKKHRLS 559 Score = 42.4 bits (99), Expect = 0.057, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 +L +L+ + GV+ G + + N ++L + + GR +TELL P +L++ + Sbjct: 8 KLEKVLDQLPVGVMVV-ADGVVTYCNEPVRKLLTMTSFHVIGRNVTELLD-PTLLERIMP 65 Query: 264 QAH 266 A Sbjct: 66 GAK 68 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 109/449 (24%), Positives = 196/449 (43%), Gaps = 25/449 (5%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 S + + L Q+ ++E DG+ D+ G +N+ + G+ + +L+ Sbjct: 109 SQMEHYHTLLKQMETIIEFSTDGIYVVDQNGITTMVNSAYEAITGFRREELVGKHMYDLV 168 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMR 310 Q K + + D ++T P+ QG +++ + + + Sbjct: 169 KKGYFDQSVSLLVLQQKKRISILQKIGGKKDVIVTGNPVFNEQGDIEMVVTSVRDISHLI 228 Query: 311 QLMT--------SQLGKVSHTF------AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 Q+ S++ + +TF + P ++L Q A VLL G Sbjct: 229 QMKAELEKAKSFSEMSQHRYTFSVDGSKEQIVFRSPSMKQLFDKVEQIAPYPTTVLLTGP 288 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRL 412 GVGK +++ IH+ S R P+I VNC + L E G + T G++ L Sbjct: 289 SGVGKEVIANLIHHLSPRKNKPFIKVNCGAIPEPLLESELFGYEKGAFTGARQDGKIGLL 348 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELA GT+ L++I + + LQ LL+V+++ + R+ + + +DV++IA T +L L+ Sbjct: 349 ELADKGTIMLDEIGEMPLSLQVKLLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLKELI 408 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 Q +F LYY L E+ IPPL R I L+++ K + + L Sbjct: 409 SQGKFREDLYYRLQVIEMYIPPLAERPEDIEPLIDHYFSFYCKLYRINKHLSPKTKEILQ 468 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL +++EN+ +S + I DLP H++ + A + + L+ + E Sbjct: 469 RYHWPGNVRELKNLMENMVVSVPSQLIEPHDLPLHIYDQTA----ATSPLTLKERVEQFE 524 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTL 621 + I A + +++ + LGI +TL Sbjct: 525 RRLIYEAIEK-NTSLRKAAQQLGIDHSTL 552 Score = 64.0 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 44/107 (41%), Gaps = 6/107 (5%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 + S+ +GVI D G + INA A ++L+++ +G+ I +L+ L ++ Sbjct: 12 ENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQ-LPHVLENG 70 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQ 311 V+ + ++ P+ + I +L + QM Sbjct: 71 TSSIGVKMNIAGRQ----CLVNRTPLYRNGELIGAIGVLEDISQMEH 113 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 119/479 (24%), Positives = 208/479 (43%), Gaps = 26/479 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 ++ + L E + +L S D + D +G + IN + Sbjct: 81 DITGWEFYWNELNELKEQVKELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENL 140 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL- 302 G+ + +L + K + + T PI + G ++ Sbjct: 141 LGKNVADLEREGYYNPSVSRMVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVV 200 Query: 303 --------------LHPVEQMRQLMTSQLGKVSH---TFAHMPQDDPQTRRLIHFGRQAA 345 L EQ+ + QL K+S + PQ +++I + A Sbjct: 201 NSRDISELLNLRKQLEDTEQLVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVA 260 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RT 402 + VL+ GE GVGK +++ +H S RA GP+I +NC + L E G + T Sbjct: 261 QVDSTVLIMGESGVGKGVIASRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFT 320 Query: 403 DN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 + G+ LELA+GGT+FL++I L + LQ LLQVI+ + R+ + I +D++ + Sbjct: 321 GARKEGKKGLLELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFV 380 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T D+ +V + F LYY L+ + IPPLR R+ IP L+ L L ++ Sbjct: 381 AATNKDIQRMVAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKNK 440 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 K +A+ L + WPGN EL +++E L ++ + I VS LPE++F ++ Sbjct: 441 KFTPEAIEILRNYNWPGNVRELENLVERLLVTKEGNEITVSHLPEYIFEGKSRFPNRIYV 500 Query: 582 L---STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 L + E+EK+ A +++ L I ++T+ RK++++ + + +R Sbjct: 501 LDICPLKEAVEEMEKQLFSMAYNRLK-NTYKVADALAINQSTVVRKIQKYNLLSRAERR 558 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 148/560 (26%), Positives = 234/560 (41%), Gaps = 43/560 (7%) Query: 103 NDGTYCAEGIIGTCALS------LAAISGQAVKTMADQ-HF--------KQVLWNWAFCA 147 GT +GT + A +G+ V + H CA Sbjct: 34 IAGTGRYAEGVGTSIIEAGQVYRTARRTGRPVYVEKPRFHPICDGCKKKDTCEEKLTLCA 93 Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADLP-------LTLAIAREVGNLLLTDSLLAETNR 200 D G++ G I + C E+ A L ++ V + + + Sbjct: 94 PIKID--GKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRITMMSN 151 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 ++ L +++++ DGV + G L ++N A R +RL L L Sbjct: 152 TVDMLQSVVDAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPP---------LPANLTLTA 202 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKV 320 E ++ + + + + ++ H + R++ Sbjct: 203 TGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFARLVIFEHQRDFTRRMSRFTSQAH 262 Query: 321 SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYI 380 S + + P RL R A SS VL+ GE G GK L ++AIH ES R P+I Sbjct: 263 SDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESNRHDQPFI 322 Query: 381 AVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 A+NC D+ L E G G T + GR+ + ELA+GG LFL++I + + LQ L Sbjct: 323 AINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLYLQVKL 382 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+++ ITRL + +LI ID++VIA T +L+ L+ N F LYY L IPPLR Sbjct: 383 LRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEIPPLR 442 Query: 497 MRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSS- 554 R + L + R +RF L+ ID + L S WPGN E + IE + Sbjct: 443 ERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKSYPWPGNIREFENAIEFIVNMMP 502 Query: 555 DNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINAAQVTG---GRIQEM 610 +NG + + LP L + R + +E+E++AI A G G + Sbjct: 503 ENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRFGSTTGGKKLA 562 Query: 611 SALLGIGRTTLWRKMKQHGI 630 + LGIG TL+RK++ +G+ Sbjct: 563 AERLGIGLATLYRKIQLYGL 582 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 113/463 (24%), Positives = 207/463 (44%), Gaps = 20/463 (4%) Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 L +AR L ++ E N N L A+ ES+ DG++S D G + N A+R+ Sbjct: 116 LLQVAR--SALKYKQAIDREANTRTN-LAAIFESVKDGLLSVDASGCVTDFNQAASRLCG 172 Query: 238 LDATASQGRAITELL-----TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPI 291 +G I L T +L + +++ ++ E + V ++ P+ Sbjct: 173 WSKDD-RGEKIDALSMPCAGTCRDLLTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPL 231 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 +G F ++ ++ R + +F M + +++ A+ V Sbjct: 232 QNKEGDVFGAVMVVRDETRLDDLERSLNKRQSFHRMIATSSKMQQVFGLIETLAQVPSTV 291 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGR 408 L+ GE G GK L+++A+H R P + VNC D L E G G T Sbjct: 292 LILGESGTGKELVAEALHLSGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVKDH 351 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + R + A GGT+FL++I ++ +Q LL+V+++ + R+ + +DV+++A T DL Sbjct: 352 VGRFQKADGGTIFLDEIGDISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQDL 411 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 V F + LYY L + +PPLR R+ IP +V++ ++ + L+ +D + Sbjct: 412 EEKVRSGEFRQDLYYRLKVITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQEV 471 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 + + + WPGN +L IE++ + ++ +PE + + Sbjct: 472 MRAMQAYDWPGNVRQLEHAIEHILIHCTEPLASLAHVPEEILQGEQAVGKYCADS----- 526 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E E++ I+ A T + + LLGI R TL+RK+++ G+ Sbjct: 527 -EEQEQQQILAALDKTDWNKAKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 116/461 (25%), Positives = 209/461 (45%), Gaps = 13/461 (2%) Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 I + E + +L LE D ++ D QG + +A VL Sbjct: 99 VAMIETYLSMEEKQRQYTVENRKLRQELKGFLEFEDKPLLLLDRQGIVTECSAGVQTVLG 158 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 L+ + G I L + + + VE E + + + +KP QG Sbjct: 159 LNRSRLLGETIERLTSEKVKIDVTNVFKPSFQTVEMKLEGKREKWH--VQIKPTY-VQGE 215 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 ++ +++ Q + ++F + R+ A +LL GE Sbjct: 216 VVSFMIKFLKKETNQF-KQSKDLLYSFQDIIGSSEAIHFAREMARRIAGQDITILLRGES 274 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLE 413 G GK + +QA+H ES+RA GP++A+NC D L E G + T G+ R E Sbjct: 275 GTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESELFGYESGAFTGAQRQGKAGRFE 334 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LAHGGT+FL++I +++ LQ+ LL+V+++ + R+ + + +DV++IA T +L +V+ Sbjct: 335 LAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLEEMVQ 394 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + F LYY L+ ITIPP+R R+ +P L+ ++ L + + K DA + Sbjct: 395 KKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRLSNKEKKQPKYFSKDAYDLIF 454 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN E+ +++E++ I LP +L ++ S +++ + E Sbjct: 455 RYPWPGNVREIVNMVEHVIYLETGDLITADSLPAYLKIKEGKS-TSQLQINVAPHGEESF 513 Query: 593 KEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGI 630 K+ +++ V G + ++ +GI TL+R++K+ I Sbjct: 514 KQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLYRRLKKLKI 554 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 497 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 137/578 (23%), Positives = 241/578 (41%), Gaps = 51/578 (8%) Query: 80 ETACI-----LSRNGDPQTLQQLSALGFNDGTYC-AEGIIGTCALSLAAISGQAVKTMAD 133 + L+ G +T ++L G G EG++ L+ + Sbjct: 4 GDGVVALDKELTVMGCSRTARRLLGRGIRPGVPFPLEGVM----KGLSLTQAK------- 52 Query: 134 QHFKQVLWNWAFCATP-------LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 + P + D +G+ + P+ TA + + L + REV Sbjct: 53 ----DAMHTAITRGAPRTGVRGQMIDGEGKRFSCLYSVHPLLGHTAKVIGVIL-VFREVK 107 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 T + L A+ +S+ +GV + D + N A ++ + G+ Sbjct: 108 YFADTTEEDNSLASSSSSLGAVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEALGK 167 Query: 247 AITELLTLP-----AVLQQAIKQAHPLKHVEATFESQHQ-FIDAVITLKPIIETQG--TS 298 ++ ++QAI+ + + ++ ++ + + T G Sbjct: 168 QCRDIFRSDLCERGCPMRQAIESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQLVG 227 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + L + L + F + RRL A S VLL GE G Sbjct: 228 AVETFRCLTDEYHLPS--LADKTGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGESG 285 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELA 415 GK + ++AIH+ S + GP++AVNC ++ + EF G + T + R R E+A Sbjct: 286 TGKEIFARAIHSLSPSSKGPFVAVNCSAIAESLIEAEFFGHEKGSFTGADQSRAGRFEVA 345 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGT+FL+++ L E Q LL+V++Q + R+ + IP++ +VI+ T D+ ++E+ Sbjct: 346 KGGTIFLDEVAELRPEHQVKLLRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLEER 405 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSC 534 F LYY L + +PPLR R IP LV + +R K+ ++ +D L + Sbjct: 406 TFREDLYYRLRTVPMHLPPLRERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFMEY 465 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLP--EHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL V+E + I + LP E ++ + + + E Sbjct: 466 HWPGNVRELERVMEYAYVFVKGPVIMMKHLPTIEEFAAKRKS------GIPQDIDEEASE 519 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + AI+ A + GG+ QE + LLG+ RT+LWR+MK G+ Sbjct: 520 RRAILRALEKAGGKRQEAANLLGMSRTSLWRRMKSLGM 557 >UniRef50_Q67RR4 Sigma-54-dependent transcriptional regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RR4_SYMTH Length = 470 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 130/464 (28%), Positives = 201/464 (43%), Gaps = 30/464 (6%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA 256 E L LL+ +D V D +G + N A R+ + A GRAIT T + Sbjct: 2 ENGVLQASLGPLLDLVDLAVTIVDAEGRVAAWNEGAERLYGIAAPDILGRAITGFFTPSS 61 Query: 257 VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLMTS 315 ++ + + ++ + VE T+ I +++ P I + Q I + V + +L Sbjct: 62 LMVRRVLESG--QRVEWTYHQPRPGIYVLVSAAPVIRDGQVVGAIAVERDVTDLVELSNE 119 Query: 316 QL--------------------GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 L + F + P RR I A + VL+ G Sbjct: 120 LLQARGQVDALQERLSPSPAPAPPSADPFQAVRGRHPAIRRAIRLASLVAATDATVLIRG 179 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSR 411 E G GK L ++AIH S R GP++ +NC E G T G+ + Sbjct: 180 ETGAGKELFARAIHQASRRRDGPFVVLNCGAIPATLFESELFGYAPGAFTGANPKGQRGK 239 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 LELAHGGTLFL+++ L +E Q LL+ ++ R+ I +DV+V+ T DL L Sbjct: 240 LELAHGGTLFLDEVGDLPLESQVKLLRFLEDRKFYRVGGSTPITVDVRVVVATNRDLEEL 299 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALAR 530 V Q R+ LY+ L+ F + IPPLR RR I L+ L R+ ++ + Sbjct: 300 VRQGRYRDDLYWRLNVFTLDIPPLRERREDIAELMQRFLHEFSMRYGRPPAEVHPAVIQA 359 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL--FTEQATDDVSATRLSTSLSF 588 ++ WPGN EL S +E + + S +G + +P L A A + Sbjct: 360 MMEHTWPGNVRELRSAVERMVILSPDGAVGPELIPAILGPARRGAAAAGPAAPPCAPGAA 419 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + E+EAI+ A T + LLGI R TL+ +M++ G+DA Sbjct: 420 PQDEREAIVAALAATRYNRSAAARLLGISRGTLYNRMRRLGLDA 463 >UniRef50_B3DWD7 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWD7_METI4 Length = 659 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 140/653 (21%), Positives = 264/653 (40%), Gaps = 43/653 (6%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 NN + I SWERC + + + P G + + A L + Sbjct: 15 NNFQPRVRNEIQKSWERCKQKGVDISNHSPLLPAGEKYPCLDLDPFAFL---KPLFPLLR 71 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 +C + +++ + +G + L++ + G+ +E G A+ +A Sbjct: 72 MQAIDFDCLITLVNSDGIVTFVDGPERLLEKANLYKLVIGSNWSEKYCGCSAIGIAIEEK 131 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSK-GRLTGTIALACPVEQTTAADLPLTLAIARE 184 + + + +H+ L N + + + L + + + Q P+ +++A Sbjct: 132 KPISVIGPEHYCASLHNIWCTSAVIHKPESNELFMALTMIGDIAQN-----PIPISVA-- 184 Query: 185 VGNLLLTDSLLAETNRHLNQL--NALLE----SMDDGVISWDEQGNLQFINAQAA---RV 235 V N L ++ LA+ L N LE S + D G + + ++ Sbjct: 185 VTNTTLIETKLAKILYTDRVLLYNKFLEKKGISTSPAFLLIDSLGTILHCPEEIFDEFQI 244 Query: 236 LRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ 295 R D + + I + V + Q++ + +I LK I ++ Sbjct: 245 TRYDPILIKNKPKPHFAQGQFFESDVILGKIAVPAVIEPVQYQNRTVGYIIELKNIFSSE 304 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + + T+ L ++ + P I + AA++ PVLL G Sbjct: 305 NYKSSPSSSLSPKTLRGQTNTL--APYSSDSIVGKSPAFVAAIEEAKIAAQNDLPVLLLG 362 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NENGRLSR 411 E G GK + ++ IH S+R+ ++A+NC + E G G T + G+ + Sbjct: 363 ETGTGKEVFAKYIHLNSKRSKETFLALNCAAIPKDLVVSELFGFEGGTFTGSAKEGKKGK 422 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 LAH GTLFL++I L ++Q +LL+V+++ I + A+ +P+DV++IA T DL+ Sbjct: 423 FLLAHKGTLFLDEIGELPFDIQGSLLRVLEEFEIFPIGAKSPVPVDVRIIAATNQDLSTY 482 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID-DDALAR 530 + F + L+Y L+ F I +PPLR R I L + + + + I +D + Sbjct: 483 CSKGLFRKDLFYRLNIFPIQLPPLRERDNDIELLFVHFVNEISSQLKFTYPIPFNDVIPF 542 Query: 531 LVSCAWPGNDFELYSVIENLAL-SSDNGRIRVSDLPEHLFT---------EQATDDVSAT 580 L WPGN +L +V + I+ ++L E + + + + + Sbjct: 543 LYQYHWPGNVRKLRNVAYRFVVKLLHKNSIKTNNLSELIKSIIDINKECKQSNNNIIIGN 602 Query: 581 RLSTSLSFAEVE------KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 S + + + E E A + + G I + + LLGI RTTL+R +K+ Sbjct: 603 IESLNTNNNDNEIGLNYKIEIFNRALEKSKGNISKAAKLLGIHRTTLYRYLKK 655 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 204/454 (44%), Gaps = 38/454 (8%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L+S+ DGV++ D +G + + N R+ L GR ++E++ +L + P Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVPNSHIL-DVLASRTP 90 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLLHPVEQMRQLMTSQLGKVSHTFA- 325 L V V + P+ + + + ++ L + QL + +T Sbjct: 91 LLGVRTRVFDHV----VVSNIVPVYHQGRMVGAVSVFRDITEVLAL-SRQLDEARNTIDL 145 Query: 326 --------------HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + P +R+ R+AA PVL+ GE G GK ++++ IHN Sbjct: 146 LRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNR 205 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRLELAHGGTLFLEKIEY 427 S R + P IAVNC L E G + + GR +LA GGTLFL++I Sbjct: 206 SARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGD 265 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + LQ+ LL+ ++ G I R+ + ++V++I+ T +LA LV + RF LYY L Sbjct: 266 MDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRV 325 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSV 546 + +PPLR RR +P + + +R + +R + AL L++ +PGN EL +V Sbjct: 326 IHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENV 385 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS----------LSFAEVEKEAI 596 +E + ++ I V DLP + + A R + EVE+ + Sbjct: 386 VEQAVVLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVL 445 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E++ LG+ R TL+RK+ ++G+ Sbjct: 446 EAGLRAFD-SKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_B8FKE8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE8_DESAA Length = 460 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 120/452 (26%), Positives = 206/452 (45%), Gaps = 31/452 (6%) Query: 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAI 262 + L+ALL + +G+I D QG ++ +++ + S GR I ++ + + + I Sbjct: 17 DLLDALLNNPYEGLILVDAQGIIRHMSSANEGIYPFTPQESVGRHIHDVSP-KSRMDRTI 75 Query: 263 KQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTS---- 315 + + + + V+ P+ + G + LL +M++L Sbjct: 76 RTGKAEIGRSMILDDKTR----VVARFPLSKDGKVIGAAGKLLFMDPGKMKELYERITHL 131 Query: 316 ------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 Q+ + +++ + D P + QAA + PVL+ GE G GK L Sbjct: 132 ERRLEKYEDELAQIYRTNYSLDSILGDSPDIIQAKRLAEQAAGADSPVLIMGESGTGKEL 191 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGT 419 + AIH S+R +G + VNC L E G + T + G+ + ELAHGGT Sbjct: 192 FAHAIHGLSQRGSGALVKVNCAAIPGELLEAELFGYEEGAFTGARKKGKAGKFELAHGGT 251 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + + +Q +L+V+++ + R+ + R +D ++I T DL L+ Q F + Sbjct: 252 IFLDEIGDMPLPMQIKILRVLQEREVERVGSNRPKKVDFRLICATNRDLPKLMRQGLFRQ 311 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYY ++ + +PPLR R I L + R L + T KI L +WPGN Sbjct: 312 DLYYRINVMTLKLPPLRDCRDDIFPLFQHFSRILGRE-KTPPKILPGVKEILEKYSWPGN 370 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V E + + + +DLP+ L ++ V + S + EK+ I A Sbjct: 371 VRELRNVTERALIVCRDNTVSPADLPD-LSQQEVLPQVIEEKASLKALMDQAEKKIIEQA 429 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E + LGI RT L++KMK+HGI+ Sbjct: 430 LVQA-SSRAEAARNLGIHRTGLYQKMKKHGIE 460 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 496 bits (1279), Expect = e-139, Method: Composition-based stats. Identities = 117/519 (22%), Positives = 224/519 (43%), Gaps = 47/519 (9%) Query: 151 FDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLE 210 F LTG A L + + D+ ++ L +L Sbjct: 85 FKDHEDLTGVRDNMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLN 144 Query: 211 SMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKH 270 ++++GV G + + N A +L + S T P + ++ +++ Sbjct: 145 NLNEGVFILSSDGEVLYQNNALAGILATQSAQS---------TQPEIPRELLQKIQSGSG 195 Query: 271 VEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMT-------------S 315 + + ++ + P E++ + + + + ++++ ++ S Sbjct: 196 GDFVYHLNNKVYSVNVAPFPCNESEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVS 255 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 ++ + +TF ++ P+ +I +Q A + VL+ GE G GK LL+ AIH S+R Sbjct: 256 KISQEHYTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRK 315 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVE 431 P I +NC + EF G G T + G+ E+A GGTLFL++I L + Sbjct: 316 DAPLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLN 375 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q+ LL+ +++G R+ + +DV++IA T +L LV+ N+F LYY ++ + Sbjct: 376 MQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLE 435 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENL 550 +PPLR + I L + + + +I+ + L WPGN EL +VIE L Sbjct: 436 LPPLREKTEDIMPLTKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERL 495 Query: 551 ALSSDNGRIRVSDLP------------------EHLFTEQATDDVSATRLSTSLSFAEVE 592 + S G+I + LP E L + + DD + + ++ E+E Sbjct: 496 VIFSTQGKISIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELE 555 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 ++ I+++ + +++ L I R+TL+ +MK I+ Sbjct: 556 RKTILDSLKKHSFNKAKVARELNIPRSTLYYRMKVLNIN 594 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 116/488 (23%), Positives = 213/488 (43%), Gaps = 37/488 (7%) Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 LA+ ++ L L +L +LE++ DG+ + G + ++N R+L Sbjct: 203 ALAVFNDISKLEKVKDELKTVKDLKERLQLILETVQDGICVINSDGYITYVNKAYLRILN 262 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQG 296 + I ++ A ++ +K + + + V + PI I+ + Sbjct: 263 EKEEDILNKNIRDVSPEGARIK-VLKTGESI---IGAISYKENGVIIVSNVNPIVIDGEI 318 Query: 297 TSFILLLHPVEQMRQL---MTSQLGKVSH-------------TFAHMPQDDPQTRRLIHF 340 T + ++ V ++++L +T K + F+ + + Sbjct: 319 TGVVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRTKKPDSAFSKYIGHSGKILDALAT 378 Query: 341 GRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD 400 +AA++ VL+ GE G GK L+++ IH S+ + GP+I VNC L E G + Sbjct: 379 TLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKGPFIRVNCAAIPQNLLESELFGYE 438 Query: 401 ---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T +L + ELA GT+ L++I + +Q+ +L+VI++ R+ I I+ Sbjct: 439 KGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVIQEKEFQRIGGEETIKIN 498 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 V++IA T +L +V+ F LYY L+ I +PPLR R+ I L+ + + + KR Sbjct: 499 VRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQDIAPLLEHFIDKIGKRI 558 Query: 518 STRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDD 576 + R+ + +DA+ L+ WPGN EL +++E + ++ I +SDLP ++ + T Sbjct: 559 NKRITVVTNDAMESLLEYKWPGNIRELENLVERIMALNETEVIELSDLPAYMRKDINTVK 618 Query: 577 VSAT-----------RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + L E EK I A + G LG+ T+ K Sbjct: 619 NAIKSKNNNEIDMLIETDEILPLKEYEKIIIEKALKKY-GSYNAAGKALGLTHKTVAAKA 677 Query: 626 KQHGIDAG 633 +Q+GI+ Sbjct: 678 RQYGIEKK 685 Score = 62.0 bits (150), Expect = 6e-08, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 55/128 (42%), Gaps = 4/128 (3%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 ++ + + + N + L + ++ +G+I+ DE+ + N +A R+L + + + Sbjct: 92 DLEDKSTINQVDNIINNNTITLEHVFSNIPNGIIATDEKDIISIFNEEAERLLGISSGDA 151 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G+ + E++ L + + V+ ++ I + II+ + + + Sbjct: 152 IGKKVYEIIEF-TNLHEINRTGKSELMVKEIINNR---ILLINRTPIIIDKKPKGALAVF 207 Query: 304 HPVEQMRQ 311 + + ++ + Sbjct: 208 NDISKLEK 215 >UniRef50_Q0SR73 Sigma-54 dependent transcriptional regulator n=1 Tax=Clostridium perfringens SM101 RepID=Q0SR73_CLOPS Length = 455 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 119/447 (26%), Positives = 218/447 (48%), Gaps = 18/447 (4%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L L + G+I + + FIN +A L + + + I P + + Sbjct: 11 LENLTNHIPLGLIFISPENKIDFINKKAESFLNSKSKSVENIDIFSFF--PQLNELINNS 68 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLLHPVEQMRQLMTSQLGK-VSH 322 + + + + + + PI + ++L+L ++++ + + ++ Sbjct: 69 SSKKNNQKDALVTSLDGNKYNLDICPINDGDIFVGWLLILKDLKEIISTVNKYSNQEAAY 128 Query: 323 TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 TF + + PQ ++++ ++S VL+ GE G GK LL+Q+IHN S + GP+IA+ Sbjct: 129 TFDDIIGESPQLKKVLRDAELISKSPSTVLITGESGCGKELLAQSIHNASNVSNGPFIAL 188 Query: 383 NCELYGDAALAEEFIGGD---RTD-NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 NC + E G + T + G+ + ELA GGT+FL++I + +E+Q LL+ Sbjct: 189 NCGAIPKTLIESELFGYEEASFTGSRKGGKPGKFELADGGTIFLDEICEMPIEMQVTLLR 248 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 VI++GV+TR+ + IPI+V++IA T +L +++ F LYY L+ + +PPL+ R Sbjct: 249 VIQEGVVTRIGGKTQIPINVRIIAATNKNLKEEIKKGTFREDLYYRLNVMPLHLPPLKDR 308 Query: 499 RGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557 G +P L+N L ++ + I+ +++S WPGN EL + +EN+ + + Sbjct: 309 LGDVPILINYFLNIKSQKLHKGIPNINQKLYKKMISYCWPGNIRELENCVENIVNLNGST 368 Query: 558 RIRVS-DLPEHLFTEQATDDVSATRLSTSLSFAE--------VEKEAIINAAQVTGGRIQ 608 ++ D L T+ + ++ L S+ E +EKEAI A G I Sbjct: 369 SYEINFDECHCLKTDNLGNPINPNSLDLPESYNENSIKPLIILEKEAIEKALCTFDGNIT 428 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQF 635 + S LGI R L+ K+K++GI+ + Sbjct: 429 KASNALGISRNALYNKIKRYGINKYNY 455 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 110/450 (24%), Positives = 196/450 (43%), Gaps = 26/450 (5%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA---VLQQAI 262 + +++ M +G++ D G+++ +N + G + L A V +A Sbjct: 28 HEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANCS-LFKCDACRRVRSEAR 86 Query: 263 KQAHPLKHVEATFESQHQFIDAVITLKPII---------ETQGTSFILLLHPVEQMRQLM 313 + L + + T PI+ + + + + ++ + Sbjct: 87 QAWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTVGAVETMTDLSELDRKE 146 Query: 314 T-----SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 S++ F M Q RR+ H +AA+S PV + GE G GK L+++AI Sbjct: 147 NELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKELVARAI 206 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKI 425 H+ R+ PY+ NC +A L E G G T R R E AHGG +FL++I Sbjct: 207 HDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDIFLDEI 266 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L + +Q LL+V++ R+ R + +DV++I T L L+ Q +F L+Y + Sbjct: 267 GDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFREDLFYRI 326 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + + +P LR R+ IP L + ++ L + +K + L + +WPGN EL Sbjct: 327 NVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGNVRELK 386 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 S +E + +D+G I LP ++ + +++ ++ A G Sbjct: 387 SSLEYAFVLADHGHIEPEHLPHNVV----VTAPPVAEPRYGNPGHDSQRQQLVQALHQAG 442 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 G E + +LGI R T+ +M++HGID + Sbjct: 443 GNKSEAARILGINRVTVLNRMRKHGIDMTR 472 >UniRef50_Q7MCP4 Sigma-54 dependent transcriptional regulator n=48 Tax=Vibrionales RepID=Q7MCP4_VIBVY Length = 610 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 137/625 (21%), Positives = 241/625 (38%), Gaps = 58/625 (9%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQ--GVTFASIYRRKKAMLT-LGQAALEDAWEYMAP 70 + SW+R + +E +P + ++ A++ + Q AL + A Sbjct: 31 NWLMNSWDRSEQAGLKERR-LPEDVRISPAMLKDRRQQHHALIDAITQFALPLFNQLFAH 89 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + L + D I+ G P+ ++L+ + + G E + GT A+ A + + V Sbjct: 90 SDSRLILTDNQGVIIGSWGQPKFREKLTEIALSSGACWQERLKGTNAIGTALVEAKPVTV 149 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 + D+H+ Q + A+PLFD KG L G + + ++ + L + + V N LL Sbjct: 150 VGDEHYIQRHRFISCSASPLFDHKGNLVGILDITSEQQKHDLSTQVLVQNMVQLVENQLL 209 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 L +LL S G++ DE G + N A ++L G+++ Sbjct: 210 NQVPEGHFRVDLACEKSLLNSGWQGILIADESGQVVAHNQVAGQLL--AKQQVVGQSLDA 267 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 +L + L+ Sbjct: 268 ILQSRQSHSPLFFETKTLQ----------------------------------------- 286 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + + D + +L+ GE GVGK +A+H Sbjct: 287 --AKRHRSRALSPSNDLHFGDATVEHCWQQANRVIDKDIRLLILGETGVGKNEFVKALHK 344 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLFLEKIE 426 S+R GP +AVNC + E G T G ++ A G LFL++I Sbjct: 345 NSQRKQGPLVAVNCGALPKDLIESELFGYVSGAFTGANSKGYQGKIRQADKGILFLDEIA 404 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L +E QS LL V++ + + + + + +D ++IA T DL LV+ +F + LYY L+ Sbjct: 405 DLPLEAQSRLLHVLQDNTVLPIGSNQTVQVDTQIIAATHKDLDQLVQLGQFRQDLYYRLN 464 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 I +P R A + + R + +I +A L+ WPGN EL S+ Sbjct: 465 GLIIELPRFAER-DDKRAFIEHIHRRYAQDHQ---EICPHLMALLLHYTWPGNLRELDSL 520 Query: 547 IENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 ++ L + + ++ +P HL + + + E+++ Q T G Sbjct: 521 LKVATLMAQGEPSLSLAHVPAHLAQKLGQLSEANAAATEVKDLRSTVDESLVKTYQATQG 580 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGI 630 I + S LLGI R T++RK+K G+ Sbjct: 581 NISQTSRLLGISRNTIYRKLKSLGM 605 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 207/464 (44%), Gaps = 37/464 (7%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 + + S+ D V+ D ++ IN + + +G+ + + A + A+ Sbjct: 122 FDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSV-RKGAQISHAVNT 180 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQ------- 316 +K+ Q + + L P+ + + ++L + +++ L Sbjct: 181 GVAMKN----IYRQEGDREYFVDLYPVSVGGKILGGVVLAKDITEIQHLTKKVNQWKTQF 236 Query: 317 ---------LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 K + TF + P + I G++ A S +L+ GE G GK + SQA Sbjct: 237 SKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDIFSQA 296 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLE 423 IHN S R P++A+NC + E G + T + G++ ELA+ GTLFL+ Sbjct: 297 IHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGTLFLD 356 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + ++LQS LL+ ++ G ITR+ I ++V+VIA T DL + +N F LY+ Sbjct: 357 EIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRSDLYF 416 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L+ I +PPLR R+ IP LV L L RL I + + L WPGN EL Sbjct: 417 RLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLIITPETVTSLKHYHWPGNIREL 476 Query: 544 YSVIENLALSSDNGRIRVSDLP--------EHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 +V+ A D I + LP +H Q + + S +E+EK+ Sbjct: 477 QNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEPRSFITPLRESQSELEKDK 536 Query: 596 IINAAQVTGGRIQ---EMSALLGIGRTTLWRKMKQHGIDAGQFK 636 I G +Q +++ LLGI TL+ K+ Q+GI+ +F+ Sbjct: 537 ISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINKKRFR 580 >UniRef50_Q30XH6 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30XH6_DESDG Length = 589 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 118/467 (25%), Positives = 206/467 (44%), Gaps = 28/467 (5%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 L E + L + ++ D +++ + +N +L +D A+ G+ Sbjct: 125 QKQRLEREKDELRRHLETVFNAVPDAIVTVSSGFTVLSVNEACRNILGMDTAAAGGQPCD 184 Query: 250 ELL-----TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-----------E 293 + L +L++A++ H ++ + I I+ P+ Sbjct: 185 KALGSAAAECMPLLREAVRAGHIVQRGGVAVQHDRGEIIVDISAVPLACAATATEHSPGT 244 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 +L++ V ++ L + H M R + A + VL+ Sbjct: 245 DASGGVMLIVRDVTRLTGL--ERALAAQHIRRSMIGRSSVMRGVFRLVESLADTDTTVLV 302 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLS 410 GE G GK L++ A+H+ RA GP++ VNC + L E G G T R Sbjct: 303 TGESGTGKELVADALHHSGARAQGPFVKVNCSALSETLLESELFGHVRGAFTGATKDRTG 362 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 R+++AHGGTLFL++I ++ +Q LL+V+++ I R+ R + +DV+V+A T L Sbjct: 363 RIQMAHGGTLFLDEIGDISPSVQLKLLRVLQEKEIERVGEGRPVKVDVRVVAATNKSLRA 422 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALA 529 LV + +F LYY L E+ +P LR RR IP L + + + F R+ +D A Sbjct: 423 LVARGKFREDLYYRLKVVEVHLPALRERREDIPLLAEHFIEEFNEHFHRRVSGLDSSAQQ 482 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL-----FTEQATDDVSATRLST 584 LV WPGN EL +E+ + + I + LP L F+ Q+ + + Sbjct: 483 LLVQYDWPGNVRELRHAVEHAFIMAGGNVIPAAALPAELMQSGRFSAQSAGTGALRHDAP 542 Query: 585 SLSFAEVE-KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E K+ + A + TGG + + LLGI R T++R++++ G+ Sbjct: 543 DAAAQGAEWKQRLSAALKETGGNKAKAARLLGISRQTMYRRLRELGM 589 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 215/484 (44%), Gaps = 25/484 (5%) Query: 172 AADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 + + + +++ + L N L+A++ES+ DG++ G + N+ Sbjct: 95 DGKIVGAIGVFQDISDFEALSLELDNVKEINNDLDAIIESVADGIVVGSADGMILRANSA 154 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 ++ + G+ + EL+ + +++ + + ++T P+ Sbjct: 155 YLQITGIQEKEFVGKNVRELINQGY-MNKSVTEMVFRTKSRVNVVDIRSGKELLMTGAPV 213 Query: 292 I--ETQGTSFILLLHPVEQMRQLMTS---------------QLGKVSHTFAHMPQDDPQT 334 E + T + ++ + ++ +L + + + F + + Sbjct: 214 FNEEKEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAFKKIITKNNDM 273 Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 ++ + AR VL+ GE GVGK L++Q IH S R+ P+I +NC L Sbjct: 274 QKKLDTAYHVARVDSTVLILGESGVGKELIAQLIHRASHRSEKPFIKINCGAIPANLLES 333 Query: 395 EFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 EF G + T + G+ ELA GGTLFL+++ L +E Q +L+ I++ I R+ Sbjct: 334 EFFGYEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLRAIQEKEILRVGG 393 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL 510 ++ I +D+++IA T DL ++ + F LYY L+ +TIPPLR R+ + + L Sbjct: 394 KKTIKLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQRKEDVIPIALELL 453 Query: 511 RSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 + + I + + L++ WPGN EL + IE L ++S + I + E + Sbjct: 454 ARYNTAYGYQKWIHPEVMDCLLNYDWPGNIRELENTIERLVVTSMDDCITKDAMAEIKYI 513 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + S + E + A ++ G ++ +A+LGI ++++ +KMK++GI Sbjct: 514 D--VHPAPNGLTSLKAFLEKEENRLLEEAYRLM-GSTRKAAAVLGISQSSMVKKMKKYGI 570 Query: 631 DAGQ 634 + Sbjct: 571 EIQN 574 Score = 67.4 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 + +S+ +GV++ D+QG ++ N AA+++ + + GR + E++ ++L + +K Sbjct: 14 IFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTSLL-EILKTGKA 72 Query: 268 LKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQL 312 + + + + + PI + + I + + L Sbjct: 73 ENNQKMHLGNC----EIISNRGPICKDGKIVGAIGVFQDISDFEAL 114 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 119/494 (24%), Positives = 214/494 (43%), Gaps = 21/494 (4%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 L + ++ ++ + RE+ T + +L+A+ ES DG+ D Q Sbjct: 203 LPYRNDVVQDGNVIGSVLVLREISEFEELVRQSQYTQKLNRELDAIFESSFDGLYVTDGQ 262 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 +N R+ + A GR + +L+ + A K Sbjct: 263 AITLRLNKGFERITGVTAAECVGRHMADLVKEGKFSRSGTLLALEKKERVTISLVAATGN 322 Query: 283 DAVITLKPIIETQGTSFILL---------------LHPVEQMRQLMTSQLGKVS-HTFAH 326 + ++T PI + +G +++ L VE + QL SQL ++ T Sbjct: 323 EVLVTSNPIFDEEGNIILVVTNVRDITELNELQRKLEQVEGLTQLYRSQLEQIKLQTSRQ 382 Query: 327 MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCEL 386 + + + + L+ + +L+ GE GVGK L+++ IH+ S R GP I VNC Sbjct: 383 LVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKELIAEIIHSSSNRKDGPLIKVNCGA 442 Query: 387 YGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQ 442 + L E G + T ++G++ ELA GG LFL++I L + LQ LL+ ++ Sbjct: 443 IPENLLESELFGYEAGAFTGASKSGKIGLFELAQGGILFLDEIGELPLNLQVKLLRFLQD 502 Query: 443 GVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSI 502 I R+ + I +DV+++A T +L ++ ++F LYY L+ I +PPLR R + Sbjct: 503 KEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFRLDLYYRLNVIPIFVPPLRERPEDV 562 Query: 503 PALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVS 562 P L N L ++ ++ + L+ WPGN EL +++E + ++S N I + Sbjct: 563 PVLANYFLNVFNNKYQMNKRLHKSVIDVLMEYHWPGNVRELENLMERMVVTSINNIISMQ 622 Query: 563 DLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 DLP + D L + E+E + A +++ L + ++T+ Sbjct: 623 DLPASFKVPRLKLDSEQDLLPLRQAVENTERELLEAAFARFRSS-YQVATALQVNQSTVI 681 Query: 623 RKMKQHGIDAGQFK 636 RK ++GI + Sbjct: 682 RKAAKYGIKRQDGR 695 Score = 61.3 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 90/246 (36%), Gaps = 40/246 (16%) Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA------------------- 162 + + +T+ + ++ +++ A+P+ + L G I Sbjct: 11 LLPLRPRQTIGE--VSRLFIDFSLDASPVLNEDQELVGLITKNRLLQVLSQESPEIEVQD 68 Query: 163 --LACPVEQTTAADLPL----------TLAIAREVGNLLLTDSLLA---ETNRHLNQLNA 207 L P+ D+P + + VG L +D L+A E + ++ A Sbjct: 69 IMLTNPITIAFDDDVPDIRKQKFTCRPVMRNGQLVGMLYFSDILVALALEIEKGKEEIEA 128 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 ++++ + VI D ++ N QA+R+L +D ++G + +LL VL I H Sbjct: 129 AIDAVYNPVIEIDNDFRIKIFNRQASRLLGIDIEEARGANVHDLLGGTEVLDSLIHGNHK 188 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMT--SQLGKVSHTFA 325 V F+ + + + +L+L + + +L+ K++ Sbjct: 189 PLPVNKLVIGDRSFLPYRNDV--VQDGNVIGSVLVLREISEFEELVRQSQYTQKLNRELD 246 Query: 326 HMPQDD 331 + + Sbjct: 247 AIFESS 252 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 215/466 (46%), Gaps = 19/466 (4%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AI R + + T ++ + ++ DGV+ D Q ++ N A ++ Sbjct: 175 AITRALDEAVRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTGP 234 Query: 240 ATASQGRAITELLT-LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP-IIETQGT 297 QG ++ L + I L + +++ T+ P II ++ T Sbjct: 235 KKKLQGLSLQSAFPFLSEPVSTVISTGTELPNQLIRWKN----YTINATIHPVIINSRIT 290 Query: 298 SFILLLHPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 ++ V Q+ R+ MT + + F + + P+ +I ++ A S Sbjct: 291 GIVVTFQDVTQIQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSSN 350 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTD-NEN 406 +L+ GE G GK L +Q+IHN S R GP++AVNC + L E G G T + Sbjct: 351 ILIEGETGTGKELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAKG 410 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ ELAH GTLFL++I + + +Q LL+V+++ + R+ R+I +DV++IA T Sbjct: 411 GKTGLFELAHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATNH 470 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDD 525 L+ + EQ RF + L Y L+ ++ +PPLR R G L + L ++ + + Sbjct: 471 SLSRITEQGRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVAT 530 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDDVSATRLST 584 A+ L +PGN EL +V E L + D I D+ E L E+ +T + Sbjct: 531 AAIQMLSDYHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPEELPVKFQSTDMPI 590 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + E+E +I + + + LGI RTTLWR+MK+HGI Sbjct: 591 PPFYQDGEREFLIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 213/441 (48%), Gaps = 18/441 (4%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 QLN+LL++ +G+ +D+ +L + N ++++ + ++ L+ LQQAI Sbjct: 118 QLNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPW-TNLQQAID 176 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL------LHPVEQMRQLMTS-Q 316 + + + Q + + PI+ + +++ L + + QL+ Q Sbjct: 177 RGKTFSTEVLSPDGQALRLVFL----PIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQ 232 Query: 317 LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 G ++ ++ ++ +AARS VL+ GE G GK + + AIHN S R Sbjct: 233 QGTARYSINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRK 292 Query: 377 GPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVEL 432 G ++ VNC + L E G T + G+ + ELA+ GT+FL++I +++ + Sbjct: 293 GSFVKVNCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSM 352 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q+ LL+V+++ + R+ + ++++VIA T +LA LV +N+F L+Y L+ + + Sbjct: 353 QAKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNL 412 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PLR R IP L ++ L L + TR+ KI+ + + S WPGN EL + IE Sbjct: 413 LPLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAV 472 Query: 552 LSSDNGRIRVSDLPEHLFTEQAT-DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 + I ++D+P+++ + + + S + EK I + GG + Sbjct: 473 NFCEGNTITINDIPDNIIQRKNHYSSTTGSHSSLDNILGKQEKALIEEVLKNCGGNKSKA 532 Query: 611 SALLGIGRTTLWRKMKQHGID 631 + L I R+ L+RK+ ++ I Sbjct: 533 AKTLNIHRSVLYRKLHKYDIK 553 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 SL E + H L +L+++D+G++ D N+ F N A ++L L+ G+ + L Sbjct: 2 SLNLELHSHDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLK 61 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 Q +K ++ E + ++ ++P + + +LH ++ ++ Sbjct: 62 PHLTFDNIIKDQRRIVKDIKVINEDEVNVTRGLLEIRP----KCYAAYAILHTIDSFKEY 117 Query: 313 MTSQLGKVSH 322 + L + + Sbjct: 118 QLNSLLQTPY 127 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 493 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 107/456 (23%), Positives = 209/456 (45%), Gaps = 13/456 (2%) Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 + + + L ++ +L A+++++ DG+++ + ++ N ++ G+ Sbjct: 69 IKVQEVELLSYEKNERKLLAIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEYIVGKN 128 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF--ILLLHP 305 I +LL A + +K ++E ++ + + + + + +G + + L Sbjct: 129 IRQLLGFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTLAAVASLKD 188 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + + ++ K F + + + A + +LL GE G GK L + Sbjct: 189 INEAIEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGESGTGKELYA 248 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLF 421 +AIH S R++ ++A+NC D + E G + T E G+ + AH GTLF Sbjct: 249 KAIHKLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLFKAAHNGTLF 308 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L++ LQ+ LL+V+++G I ++ + IDV++IA T +L ++ +N F L Sbjct: 309 LDEIGELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMISKNTFREDL 368 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA-LARLVSCAWPGND 540 YY L+ I IP L+ R IP LVN +++L K+ +K + A + +LV+ WPGN Sbjct: 369 YYRLNVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKLVNSNWPGNV 428 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT-----RLSTSLSFAEVEKEA 595 EL +V+E ++ +L + S EK+A Sbjct: 429 RELKNVVERAMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFNFNFKLKDVVEAAEKKA 488 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +I+A + ++ + LG+ TT+ K+ ++ ID Sbjct: 489 LISAIKKYK-SCRKAAKALGVSHTTIINKLNKYKID 523 >UniRef50_A1K9F7 Sigma-54-dependent transcriptional regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K9F7_AZOSB Length = 629 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 132/596 (22%), Positives = 233/596 (39%), Gaps = 36/596 (6%) Query: 41 VTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSAL 100 + +A+L + + + + + L+ +L G A Sbjct: 60 SALRRLADEHRALLAHAEPEMLSLFGTLDASSWVVACLEAGGAVLKSCGGNTAELGDIAT 119 Query: 101 GFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGT 160 G +E + GT + +HF + + + A P+F GRL G Sbjct: 120 ALRPGVNLSEQVAGTNGPGCVLAEQRPAIIHGGEHFLEEIRGFTCVAVPIFHPSGRLIGA 179 Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + + + A L AR + N LL++ L A ++ L++S+ G ++ Sbjct: 180 LNASRRHDGRRAGILEPLALAARAIENRLLSE-LAAPIRMRVHSTPELVDSVMAGRLACS 238 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 G + ++ A ++L L+ + + AV + + L A Sbjct: 239 ADGLILGASSCARQLLGLEQDGGE-------IPAAAVFSTSFGELVGLLRRGADG----- 286 Query: 281 FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQD---DPQTRRL 337 P+ + L + R ++G + D + ++ Sbjct: 287 ---------PVTVRCNNGVQVHLRLDAEARPRPARRIGTEATRGDQDAARMRLDSRLQKD 337 Query: 338 IHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI 397 + +A PVL+ GE G GK +L++ +H R G ++AVNC + E Sbjct: 338 VRQAERAFAHDLPVLINGETGTGKEVLARHLHASGPRRDGAFVAVNCSAIPVGLIESELF 397 Query: 398 GGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 G + T G +LE A GGTLFL++I + +ELQ+ LL+V+++ +TRL + R Sbjct: 398 GYEDGAFTGARRGGMAGKLEQADGGTLFLDEIGDMPLELQARLLRVLQERTVTRLGSTRA 457 Query: 454 IPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSL 513 D +I T DL+ F LYY + + +PPLR R LV++ L + Sbjct: 458 RAFDCSLICATHRDLSAHCASGGFREDLYYRIAGLRVDLPPLRER-EDFDELVDHLLATH 516 Query: 514 EKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573 + ++ + A L WPGN EL V+ +++GRI + LP L T+ Sbjct: 517 AR--GAPPRLAERAREALRRHRWPGNIRELQQVLRLGIALAEHGRIDLDQLPASLATQAP 574 Query: 574 TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 T + E +A+ A G + + LGI R TL+RK++++G Sbjct: 575 PKRTPGTAT----TLQSAECDAVQAAYARNRGNVSATARELGIARATLYRKLRRYG 626 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 493 bits (1270), Expect = e-138, Method: Composition-based stats. Identities = 112/475 (23%), Positives = 202/475 (42%), Gaps = 25/475 (5%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L D ++ + +L A+ ES DG++ DE G IN+ R+ + G+ Sbjct: 80 NAELRDLVINKLEEINKELEAIFESSHDGIVVADENGVFIRINSSYERITGIPREEIIGK 139 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LH 304 ++ V ++ +VIT P+ ++ ++ + Sbjct: 140 TAQSIVEKGLVSDSVTIHVLKTGQSHTFSQTFRSGRQSVITGSPVFDSNNRIIRVVTNVR 199 Query: 305 PVEQMRQL----MTSQLGKVSHT-----------F-AHMPQDDPQTRRLIHFGRQAARSS 348 + ++ +L SQ ++ F + + + + A+ Sbjct: 200 DMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFAKVD 259 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE 405 P+L+ GE GVGK +++ ++ S R P++ +NC + L E G + T + Sbjct: 260 APLLITGESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLESELFGYEGGAFTGAK 319 Query: 406 N-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 GR E+A+GGT+ L++I L + LQ LL+ ++Q R+ ++++ +DV++IA T Sbjct: 320 KEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLIAAT 379 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID 524 DL +V Q +F L+Y L+ I IPPLR R I LVN L K+++ +I Sbjct: 380 NRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNKKYNVSKRIS 439 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA--TDDVSATRL 582 D + W GN EL ++IE L + D I + LP+ + DD Sbjct: 440 GDVYHAFTNYTWVGNVRELENLIERLVVICDRDEITLDYLPDEMKKAIYVWRDDSIGREQ 499 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + + E E+E A + + + LG+ +T+ +K ++GI R Sbjct: 500 TYKEAKEEFEREFFCRALEKYKSSR-QAAEKLGLDHSTIVKKAAKYGIKLLSRSR 553 >UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with GAF sensor, Fis family n=1 Tax=Polaromonas sp. JS666 RepID=Q122Y8_POLSJ Length = 633 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 159/640 (24%), Positives = 266/640 (41%), Gaps = 45/640 (7%) Query: 4 AFNNDGRG----ISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQ 58 AF +DG I + SW+RC + + V + A + ++ +L + Sbjct: 23 AFFDDGSAPAGLIDDPVLRSWQRCRGQGRGASEQVEFDPVDRLALARLLEAQRTLLEAAR 82 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 L+ ++ A+ + D L+ G + F G +E +IGT A+ Sbjct: 83 PELDALARAVSDAGYAVLLTDVQGRALAVEGCTDRRSEPLRQAFRPGVDLSEAVIGTNAM 142 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 S A + V+ + +HF + CA P+FD +GR+ G + ++ + A + LT Sbjct: 143 SSAMTEQRVVRVLGPEHFFADNQIFHCCAAPVFDPQGRVVGAVDISRDMPGLAAGAVALT 202 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AR + L R Q ++ D+ ++++ G L N A ++ + Sbjct: 203 QRCARRIERKLFEALPAFVRLRLETQ-----DASDEAWLAFNRDGGLLAANIAARHLIDV 257 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 QG ++L A + Q + P+ + Sbjct: 258 -PFVPQGLGFSDLFDGRFDTLAAAASQAS-GELSLRLRGGVQLRARASGVPPMARS---- 311 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + R + G VS +A + PVL+ GE G Sbjct: 312 -VATPNRSAPPRTAPRPEFGDVSFAAD------------FERALRAFNAGLPVLVTGETG 358 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE-NGRLSRLEL 414 GK + ++A+H S R GP IA+NC +A E G G T G ++E Sbjct: 359 AGKEVAARALHEVSHRHDGPLIAINCGAIAPQLMAAELFGHVEGAFTGARRGGSAGKIEA 418 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTL L++I + +ELQ LL+++ G + R+ A R + +DV+ + T DL LV Sbjct: 419 AQGGTLLLDEIGDMPLELQVGLLRMLDSGEVLRVGATRAVRVDVRFVCATHRDLRALVAS 478 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR-LVS 533 F LYY + F++ IPPLRMR N L +L ++ D L R L S Sbjct: 479 GLFREDLYYRISGFQLQIPPLRMRSD-----FNAVLDALLAEQGCAPRLLDAGLRRALKS 533 Query: 534 CAWPGNDFE-LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-----LSTSLS 587 WPGN + +++ LAL + + +S P+H +++ V + R LS Sbjct: 534 RRWPGNVRQLRHALRLALALLEADEALTLSHFPDHEPDHESSLGVPSARPRTGAPDDGLS 593 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + + +++AI A + TGG + +ALL IGR TL+RK+ + Sbjct: 594 WRQTQQQAIDAALRQTGGNVTAAAALLNIGRATLYRKLAK 633 >UniRef50_C0CV14 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CV14_9CLOT Length = 449 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 113/442 (25%), Positives = 202/442 (45%), Gaps = 28/442 (6%) Query: 210 ESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP----AVLQQAIKQA 265 +S+D G+ +DE G ++N + +G+++ + +L V + + Sbjct: 16 DSLDWGISIFDENGKFLWVNRYVLKCSGRPRKFYEGKSVYDFQSLGILDTPVCSEVFRLK 75 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE------------QMRQLM 313 + H++ ++ + ++T PI ++ G + ++ + RQ Sbjct: 76 KKVTHLQYSYTGSGTLGEFIVTATPIFDSNGNVKYAVADRMDVRHLKARHELVLRERQQH 135 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 + KV + +L+ +AA + +LL GE G GK + + IH S Sbjct: 136 DASKIKVESKKLELIYRSGVMEKLVKDVERAAAVASVILLQGESGTGKEVFAHYIHENSP 195 Query: 374 RAAGPYIAVNCELYGDAALAEEFIG---GDRTDNEN-GRLSRLELAHGGTLFLEKIEYLA 429 GP I +NC ++ L E G G T N G+ +E A GTLFL++I + Sbjct: 196 YRNGPMIEINCASMPESLLESELFGYTKGAFTGALNTGKEGLIEAADKGTLFLDEINSMP 255 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + LQ+ LL+V++ ITR+ + + I +D ++IA T L VE+ F LYY L+ Sbjct: 256 LGLQAKLLRVLESKSITRIGSTKPIDVDFRLIAATNRSLVECVEERIFRADLYYRLNVIP 315 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIEN 549 +TIPPLR R+ IP L + L R+S + K + +WPGN EL +++E Sbjct: 316 VTIPPLRERKEDIPVLTDFFLDKFCDRYSLQKKFAKRVYRTFEAYSWPGNVRELKNIVER 375 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 + + S I ++++P+ +F+E + EKE I A ++ G ++ Sbjct: 376 MVIMSTVSTITINEIPQSMFSENGFPAGPEPEMD--------EKERIRRALEINNGHREK 427 Query: 610 MSALLGIGRTTLWRKMKQHGID 631 + L I R TL K+K++G++ Sbjct: 428 TARYLNISRRTLQYKLKKYGLN 449 >UniRef50_A8MFU8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A8MFU8_ALKOO Length = 469 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 107/463 (23%), Positives = 202/463 (43%), Gaps = 26/463 (5%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 +R+ + +L DDG I D +G + IN Q L GR I E ++ + Sbjct: 5 LDRYKYIFDEILTMTDDGFIVVDREGVVTDINDQYCDFLGTSKENVIGRNIKETISNSKM 64 Query: 258 LQQAIKQAHPLKHVEATFESQHQFID---AVITLKPIIETQGTSFILLLHPVEQMR---- 310 + + + + + +D +++ + + + + +++ Sbjct: 65 IDIMKNACREEGAIHKFVDGETKEVDNKFLLVSRSCVFDEKQEVIASVAQVKFRLQTLDC 124 Query: 311 --------------QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + +++ +TF M + + G +AA++SFPVLL GE Sbjct: 125 AQKLMKEYSALEFYREEYNKISTNQYTFDGMIGISKRFLGIKKMGMRAAKNSFPVLLTGE 184 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD----NENGRLSRL 412 G GK + ++AIHN S+R++ P +++NC L E G + + G++ + Sbjct: 185 TGTGKEVFARAIHNGSDRSSKPMVSINCGAIPSELLESELFGYEEGSFTGAKKGGKIGKF 244 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 A GGT+FL++I + ++Q LL+V+++ + ++ + +D++VIA T +L +V Sbjct: 245 IQADGGTIFLDEIGDMPPDMQVKLLRVLQEKEVDKIGGTEPVSVDIRVIAATRQNLVKMV 304 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 + +F LYY L+ I + PLR RR I N L + + T + + Sbjct: 305 REGKFREDLYYRLNVINIEMIPLRERREDILIFANYFLNKINIEYKTNTTLSKEVKRCFQ 364 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV- 591 +WPGN EL +VI + S D I+++DLP + + + S + + + Sbjct: 365 GYSWPGNIRELDNVIRSSYASCDEFIIQLTDLPAKMVSSHNVNSFSGSGEKMLKNMVDSY 424 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 E I + Q + LGI R+ L++KM + GI + Sbjct: 425 ESSIIKEVLKKCNWNCQLTANELGIHRSLLYKKMDKFGIKVKK 467 >UniRef50_C1MAF5 Signal-transduction and transcriptional-control protein n=5 Tax=Enterobacteriaceae RepID=C1MAF5_9ENTR Length = 582 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 132/514 (25%), Positives = 218/514 (42%), Gaps = 35/514 (6%) Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLP-------LTLAIAREVGN 187 H+ + + P+F R+ G I + C + L IA + + Sbjct: 86 HYCSEMLDLN---APIF-LNNRVIGVIGIICSTQAQRDTLLSQIDKFVTFIEQIAVMISS 141 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 + L L+++MD GV++ D +G + N A R+L Sbjct: 142 KVFECLERLRAQETLGAFRRLIDAMDRGVVAIDGKGLIWHANHSADRILN---------- 191 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 E+ LP ++ + + T E Q + + + I+ + Sbjct: 192 -REVQGLPLTIETTGDSLYGDEEAWLTLEGQKHHVLCKQISLSSQDNDRLTMIIFRDAHD 250 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + L S + P +L + A S VL+ GE G GK +++ A Sbjct: 251 YLSNLTPSPYESDMQV--RLIGHSPSMEQLRSTIGKIANSYASVLITGESGSGKEVVAFA 308 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLFLE 423 IH S R A P++ +NC + L E G + + GR+ + ELA+GG+LFL+ Sbjct: 309 IHQSSPRKAAPFVTINCAAIPEQLLESELFGYVRGAFSGADPKGRMGKFELANGGSLFLD 368 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V+++ ITR+ + I IDV++IA T ++ +VE N+F L+Y Sbjct: 369 EIGDMPLHLQAKLLRVLQEKAITRVGSNNTINIDVRIIAATNKNINAMVENNQFREDLFY 428 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFE 542 L+ + +P LR RR I L + K+ DD + RL + WPGN E Sbjct: 429 RLNVVPLVLPSLRERRADIAVLAQYFADEFSVSYQRPPQKLPDDVINRLYAWHWPGNIRE 488 Query: 543 LYSVIENLALSSDNGR-IRVSDLPEHLFTEQATDDVSATRLSTSLSF--AEVEKEAIINA 599 L +VIE + + I S LP +L T + T L+ + E+EAI N Sbjct: 489 LRNVIEYIFVMRGEAAGINASHLPPYLLTAADGRKTTMTAQPRQLASKGKQAEREAIENV 548 Query: 600 AQVTGGR---IQEMSALLGIGRTTLWRKMKQHGI 630 Q G ++ + LGI TL+RK+K +G+ Sbjct: 549 IQRFGSSVEGKKQAATELGISIATLYRKIKLYGL 582 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 119/470 (25%), Positives = 209/470 (44%), Gaps = 32/470 (6%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + ++ L + L + LL++ G++ D +G + N +++ + R Sbjct: 9 EIESSEDQLQQLKDSLEMIEELLDNAYHGMVLVDHEGRIIKWN--YEKLMGIKEEEVLMR 66 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLL 303 + E++ + A L V+ Q D + + PI++ G + +L Sbjct: 67 PVEEIIENTRLHIVAKTGEKELFDVQKI-----QGYDMITSRIPIVKDGRVIGAAGTVLF 121 Query: 304 HPVEQMRQLMT----------------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 V+++ L+ +L + ++F H+ + Q L R+AA S Sbjct: 122 KDVKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQMIYLKELARKAAES 181 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDN 404 + VL+ GE G GK + AIH S R G +I +NC + L E G G T Sbjct: 182 NSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITINCAAIPNELLESELFGYDAGAFTGA 241 Query: 405 EN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 + G++ + EL +GGT+ L++I + +E+Q+ +L++++ R+ I +DV++IA Sbjct: 242 KKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRIIAA 301 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T L +++ RF + LYY L+ I IPPLR R IP L L L +K Sbjct: 302 TNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIEMKE 361 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL 582 + + + L WPGN EL + +E I DLP HL + S + L Sbjct: 362 LTFETIEVLKKYQWPGNVRELRNTLERALNIVQGDMIYPEDLPGHLIESSSKSSYSHSLL 421 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + A+ E EAI +A + + G + LGI RT L++K++ + ++ Sbjct: 422 LKDI-MAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQAYEMNK 470 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 119/453 (26%), Positives = 206/453 (45%), Gaps = 34/453 (7%) Query: 204 QLNALLESMDD---GVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 ++ LLE D G + D + + A +L +D + G+ +TE++ + + + Sbjct: 8 EIYELLEKAFDEFKGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIP-HSRMSE 66 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLM---- 313 +K P + +E + + A+I+ PI + G + ++++R + Sbjct: 67 VLKSGEP--EIAQVWEVKGE--TAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLR 122 Query: 314 ------------TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 +L + ++ P R+ A++ +LL GE G GK Sbjct: 123 YLDAELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGK 182 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L + A+H S+R G I VNC D L E G + T + G+ + ELA+ Sbjct: 183 ELFAHALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANR 242 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + LQ+ LL+V++ G I R+ + +DV+++A T +LA LV +F Sbjct: 243 GTLFLDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQF 302 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY L+ E+ IPPLR R IP LV + +R L R ++K I + S W Sbjct: 303 REDLYYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHW 362 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 PGN ELY+V+E I ++D+ L ++ +R S + +E + I Sbjct: 363 PGNVRELYNVLERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRSSN--TLRNLEAKII 420 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 + G + +LGI R+T++ K+K++ Sbjct: 421 HRVLESCNGNKSRAAEILGIHRSTIYNKLKRNN 453 >UniRef50_A4J4R9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4R9_DESRM Length = 568 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 124/469 (26%), Positives = 208/469 (44%), Gaps = 33/469 (7%) Query: 175 LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAAR 234 L + AR L+ + H QLN LL + +G++ DEQ + +N +A + Sbjct: 120 LRHLKSYARYFEFLIKEGVYKQKELLHTQQLNYLLSLVPEGIVLLDEQKKISTLNERAEQ 179 Query: 235 VLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 L L R + ++ T A+ P++ F +FI A+ Sbjct: 180 -LNLAHHYHHKRDLKDIHTQGHQFNSALS---PIQIKVKNFYQDKKFIGAICHT------ 229 Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 + + L Q + S F + P ++++ +Q A+S VLL Sbjct: 230 ---------QNFDTISPL--PQRTQRSPVFPGIIGKGPALQKILEIIKQVAKSESTVLLR 278 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLS 410 GE G GK L + +IH S R +GP++A+NC +A L E G + T + G+ Sbjct: 279 GESGTGKELFAHSIHELSSRNSGPFVAINCAAIPEALLESELFGYEEGSFTGARKGGKPG 338 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 ++ELA+ GTLFL++I + + LQ+ LL+VI++ I + +PI+V++IA T +L Sbjct: 339 KVELANNGTLFLDEIGDMPLTLQAKLLRVIQEKNIEPVGCSYPLPINVRLIAATHRNLEE 398 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALA 529 ++ F L++ L+ I IPPLR R L++ LR KI AL Sbjct: 399 MIGTGTFREDLFFRLNVIPIFIPPLRQRPEDTELLLHYYLRKYCILLKKPFKILSYAALQ 458 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP----EHLFTEQATDDVSATRLSTS 585 +LV WPGN EL +++E L + I DLP + + E + T Sbjct: 459 QLVKYHWPGNIRELENLVEYLVNIHNQDIISPEDLPITIQQPIKEENQPIGIQPVEPQTR 518 Query: 586 LSFAEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGID 631 S + + +I G ++ +A LG+ TL+R++K++ + Sbjct: 519 KSSGQRSQAELIQMLNRFGWHTDGKKKAAAALGVSLATLYRRIKKYKLK 567 >UniRef50_P38022 Arginine utilization regulatory protein rocR n=85 Tax=Firmicutes RepID=ROCR_BACSU Length = 461 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 121/445 (27%), Positives = 209/445 (46%), Gaps = 22/445 (4%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL----PAVLQQ 260 ++L+ +D G+ DE GN N + ++ ++ + + ++ + L Q Sbjct: 12 FQSILDEIDVGLHVVDEHGNTIVYNNKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQ 71 Query: 261 AIKQAHPLKHVEAT-FESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS--- 315 A+++ +K+V+ + F ++ Q I + PI+ + + + + V ++ +L+ Sbjct: 72 ALQEGKTIKNVKQSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMN 131 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 + G ++TF + P + +I ++A R+S VLL GE G GK L +Q+IHN S+R+ Sbjct: 132 KKGSTTYTFDSILGTSPAIQDVIENAKRATRTSSSVLLAGETGTGKELFAQSIHNGSDRS 191 Query: 376 AGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 GP+I+ NC D+ + G G T + E AHGGTL L++I L + L Sbjct: 192 GGPFISQNCAALPDSLVESILFGTKKGAFTGAV-DQPGLFEQAHGGTLLLDEINSLNLSL 250 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q+ LL+ +++ I R+ + + PIDV++IAT D + R + LYY L + I Sbjct: 251 QAKLLRALQERKIRRIGSTKDTPIDVRIIATMNEDPIDAIAGERMRKDLYYRLSVVTLII 310 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR R+ I L + ++ F ++ I DD +S WPGN EL +IE Sbjct: 311 PPLRERKEDILLLASEFIQKNNHLFQMNVEHISDDVKQFFLSYDWPGNIRELEHMIEGAM 370 Query: 552 L-SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV-------EKEAIINAAQVT 603 +D I S LP + D+ A++ EK I N + Sbjct: 371 NFMTDEQTITASHLPYQYRMKIKPADIPEPETPRHQPAADLKEKMESFEKYVIENVLRKH 430 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQH 628 G I + + LGI R +L ++K+ Sbjct: 431 GHNISKAAQELGISRQSLQYRLKKF 455 >UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VS90_MARMS Length = 663 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 136/633 (21%), Positives = 253/633 (39%), Gaps = 25/633 (3%) Query: 13 SPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLGQ-AALEDAWEYMAP 70 I SW RC + + T + + +++L + L ++ Sbjct: 25 KERIQASWYRCEQFGLDHSSRPDFATLPKGTLNDLIDQHRSLLETTENEVLPYYENILSN 84 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 C + + D +L+ G P+ S G G E +GT A+ A I+G+A++ Sbjct: 85 SACMIVLADRQGHVLNTWGQPRF-GSASQHGLVGGNQWTEMGVGTNAIGTALITGEAIQV 143 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+HF + A+P++++K L G + ++ + ++ V N L+ Sbjct: 144 GRDEHFLRANRFMVGSASPIYNTKNDLVGVLDISSDAYLPQDHTFGMVKLMSLSVENRLI 203 Query: 191 TDSLLAETNRHLNQLNAL-LESMDDGVISWDEQGNLQFINAQAARVLR-----LDATASQ 244 + E N + L+S G++ DE G + N +A VL L+ Sbjct: 204 FSAFQQEHFILSFNTNVVSLDSHWSGILVLDENGTIVSANRRAEVVLAQDLALLNINQIF 263 Query: 245 GRAITELLTLPAVL---QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 + E+ P L A+ + V + + D + Q + ++ Sbjct: 264 DIEMREIKHHPYSLPMKLIAMGRYQFYVKVIPPVQQIMRIPDFRQRADYVAPPQAEAIVM 323 Query: 302 -----LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + V++ + S + A + D + RL+ + P+L+ GE Sbjct: 324 NEKSPSVEKVKRQENVPISTIPDNVIPLAELQHGDERVARLVRQAHKIMEKDIPILIHGE 383 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRL 412 G GK + +++H S R+ +AVNC + E G + T +N G + + Sbjct: 384 TGAGKEIFVRSLHYHSSRSKEMLVAVNCAAIPAELVESELFGYEKGAFTGAQNRGSIGLI 443 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 AH GTLFL++I + + +QS LL+V+++ V+T L + P+D+K+I+ T L V Sbjct: 444 RRAHHGTLFLDEIGEMPMAVQSRLLRVLQERVVTPLGSTEAFPVDIKLISATNRTLKDEV 503 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 ++ RF + LYY + I +P LR R L+ L K + L LV Sbjct: 504 KEGRFRQDLYYRISGLNIELPALRERT-DKAELIKYLHERLRKE-EPGPALSQAMLDLLV 561 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 + WPGN +L V++ +D + LP+ F + + + S + E Sbjct: 562 THPWPGNMRQLAHVLKVGMAMADEEELEEWHLPDDFFDDLDVMTQADDSVEGSSQREQEE 621 Query: 593 --KEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 ++ I G + + + G+ R T+++ Sbjct: 622 PLEQLIPRLLNEFKGNVSQTAKTAGVSRNTVYK 654 >UniRef50_A4IPD5 Transcriptional regulator n=6 Tax=Geobacillus RepID=A4IPD5_GEOTN Length = 464 Score = 490 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 115/457 (25%), Positives = 215/457 (47%), Gaps = 32/457 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL----LTLPAVLQ 259 +L+A+L+S D ++ DE G + + + D + G+++ +L + P+V Sbjct: 11 ELDAILKSSTDNIVITDENGIVLRASPNCLSIYGKDVSYLVGKSVYQLEKENIFCPSVTA 70 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL-----LHPVEQMRQLMT 314 + +++ ++ ++ T + + T P+ + Q ++ L +E++++ Sbjct: 71 RVLREKKEVQLMQQTTTGRV----VMATGVPVFDQQNCIVRVISFSHDLTELERLKEDYE 126 Query: 315 SQLGKVSH--------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 ++ H ++ R+ R+ A+S VL GE GVGK + ++ Sbjct: 127 KLRKQMEHYQTEIEELKPQNIVIQSKAMERVWKLVRRVAQSDATVLFLGESGVGKNVFAR 186 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFL 422 +H S R P+I VNC ++ E G + T + G+ +ELA GTLFL Sbjct: 187 FLHLSSSRRNEPFIEVNCSAIPESLFESEMFGYEKGSFTGAQKTGKPGLIELADQGTLFL 246 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I L + +Q+ LL+V+++ + R+ + +D ++IA+T +L +V+Q F + L+ Sbjct: 247 DEIGELPLSMQAKLLKVLQEKKMIRVGGVKERTVDFRLIASTNRNLEEMVKQGIFRQDLF 306 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y LH I +P LR R+ I L L +++ + LV WPGN E Sbjct: 307 YRLHVIPIYVPSLRERKEDIFMLAQYFLEKCNQKYHMDKYFHPSIVDHLVHYHWPGNVRE 366 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHL--FTEQATDDVSATRLSTSLSFAE----VEKEAI 596 L ++IE L ++S+ I LP + ++ A A + S + E VE++ + Sbjct: 367 LENMIERLVITSETKAIYPEYLPFSIQKHSKVAATPSLAEKRSEPSTLKEAVEQVERQWL 426 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + AAQ EM+ LGI + T+ RK+K+H ID+ Sbjct: 427 LRAAQQCK-TTYEMADYLGISQPTVVRKLKKHRIDSK 462 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 108/511 (21%), Positives = 225/511 (44%), Gaps = 23/511 (4%) Query: 137 KQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTT-------AADLPLTLAIAREVGNLL 189 K+ +A P+ + G I + E+ + + ++ + + Sbjct: 89 KERCTEYATIGYPIIMED-EVIGVIGINIFNEKQLNMISKEFDSMITFLNRLSTLLVGNI 147 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + + + + N +++S+ G++ D G L++IN + ++L + + I Sbjct: 148 IYYDTIKKLQIQTEETNHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIK 207 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 + ++ + + K + +++ + + ++ I ++++ Sbjct: 208 DTISNFNIKLLS----KEYKGKRISIHGKNESFLIKSSPIIFKGERVSNIIEFNKKIDEV 263 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + F + + + + A++ VLL GE G GK L ++AIH Sbjct: 264 QAAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFARAIH 323 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKI 425 ES+R P+IAVNC D L EF G + + + G++ + ELA+GGT+FL++I Sbjct: 324 FESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEI 383 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L + LQ +L+V+++ T++ + I +DV++IA T DL +V+ +F + LYY L Sbjct: 384 GDLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRL 443 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + I +P L+ R I L + +R + ++K + + +WPGN EL Sbjct: 444 NVIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIKQLSKEVKDSFKKYSWPGNIRELE 503 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +VIE + ++ I LP+ + + + + S + EK +I+ + G Sbjct: 504 NVIEYIVNTTKENIIYNEHLPKSF---KISKEDEKSNKSLQDRLYKYEKNLLISMMEEYG 560 Query: 605 --GR-IQEMSALLGIGRTTLWRKMKQHGIDA 632 G+ + ++ L I +TL+RK+ ++ + Sbjct: 561 EDGKGKERIAKELDINLSTLYRKLNKYNLQK 591 >UniRef50_C5EM87 Sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM87_9FIRM Length = 642 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 119/472 (25%), Positives = 221/472 (46%), Gaps = 25/472 (5%) Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 AI R + + + + L L E++ DG+I D++ + NA R+ + Sbjct: 174 AIGRALNSAASLLKNMEYEANQMEFLRLLAENVTDGLIFVDDRERIGIANANVGRIFP-N 232 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTS 298 G+ E P + + +K +H++ + + ++ + P+ I + Sbjct: 233 RRPVAGKGFQESF--PFMAKNYLKACREKQHLDNEIY-RTRDMNIAVDFTPVMIGGEYKG 289 Query: 299 FILLLHPVEQMRQLMTSQLGK-------VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 I+ +H + +++Q K + F+ + P +I + A + V Sbjct: 290 MIITIHDIGRLQQREAQIRSKLNEMGLYAKYQFSDIIHQSPVMEHVIERAEKFAAVTSNV 349 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENG 407 L+ GE G GK L++Q+IHN S+R +GP++A+NC + + L E G + T + G Sbjct: 350 LIYGETGTGKELVAQSIHNASKRKSGPFVAINCASFPENLLESELFGYEEGAFTGAVKGG 409 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + E AHGGTLFL+++ L V Q LL+V+++ + R+ ++++ IDV++IA T + Sbjct: 410 KPGLFEQAHGGTLFLDEVSELPVSFQGKLLRVLQEREVRRVGGKKVVKIDVRIIAATNKN 469 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDD 526 L + F L Y L + +PPLR RR I L + L +++F T +D Sbjct: 470 LKQMTLDGLFREDLLYRLDVLNLPLPPLRKRREDIRLLAEHYLMEYKEQFETCADHFTED 529 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT------ 580 A+ L S + GN EL +++E +++++ + ++V D+ E L + + Sbjct: 530 AMTLLSSYPFMGNIRELRNIVERISVTAQDTAVQVLDVEESLGLGEYDRQIQTAGQVGRI 589 Query: 581 --RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + ++KE I + G E++ LG+ RTTLWRKM + G+ Sbjct: 590 QDQAAAPAYIRNIQKEEIERLLKECGYNKSEVARRLGLNRTTLWRKMGKMGL 641 >UniRef50_Q893M0 Putative sigma-54 interacting protein n=1 Tax=Clostridium tetani RepID=Q893M0_CLOTE Length = 595 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 99/336 (29%), Positives = 160/336 (47%), Gaps = 12/336 (3%) Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + H + +L ++G F M + L + A + +++ GE G GK Sbjct: 264 VTHEFKNFNKLNNDKIG-----FKEMIGQSNSMKELYELIEKVADKNVNIMVTGESGTGK 318 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGG 418 L+ +A+H ER P++ VNC L E G + T + R+ R ELAH G Sbjct: 319 ELVVRALHYGGERRDNPFVKVNCAAMPKDILESELFGHEKGAFTGADKKRVGRFELAHKG 378 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I + + +Q+ L++I+Q R+ + I +DV++I T DL V++ RF Sbjct: 379 TLFLDEIGDMDLSIQAKFLRIIQQQEFERVGGNKTIKVDVRIICATNKDLKKEVKEGRFR 438 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWP 537 LYY L+ + +PPLR R+ IP L+++ L+ K+F KI + L+ WP Sbjct: 439 EDLYYRLNTITLYVPPLRERKEDIPFLIHHFLKEKGKKFDKIAPKISPEVFDALMEYDWP 498 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS---TSLSFAEVEKE 594 GN EL + +E + IR+++LP + D S ++ +E+E Sbjct: 499 GNVRELENAMERAIILCGKDLIRLNNLPISIVKNNKEFDESKHVTPIDIKEITIRNMERE 558 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 II A + + S LGI R TL+ KMK+ I Sbjct: 559 IIIEALEKCDWNRTKTSKSLGISRRTLYNKMKEFNI 594 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 490 bits (1261), Expect = e-137, Method: Composition-based stats. Identities = 135/513 (26%), Positives = 205/513 (39%), Gaps = 36/513 (7%) Query: 147 ATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNR-HLNQL 205 PL D+ G + G +A+ L T I L + R + Sbjct: 126 GVPLRDASGAVLGHLAVFDARPMPPEPRLLYTFQIFAARAAAELDRLRMDRMLRDSEERF 185 Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 L E + D + N A RVL L + G L+ Q+ +K+A Sbjct: 186 RDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRLVKEA 245 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-------ETQGTSFILLLHPVEQMRQLMTSQLG 318 + +PI + G + V + + Q Sbjct: 246 FASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPDRGGQFTRTVFIDVTERVLMEREQAR 305 Query: 319 ------------KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 K +H F + P ++ + A + VL+ GE G GK L+++ Sbjct: 306 LQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVAR 365 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLE 423 A+H+ S R A P I +NC + E G + T + R ELA GGTLFL+ Sbjct: 366 AVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLD 425 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 ++ L++E Q+ LL+V+++ R+ + +DV+VIA T DLA LV++ F L Y Sbjct: 426 EVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLY 485 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFE 542 L+ F + +P LR R G IP LV + R R+ ++ D L LV WPGN E Sbjct: 486 RLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPGNIRE 545 Query: 543 LYSVIENLALSSDNGR--IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 L +VIE A+ SD I LP T +A + S VE + I + Sbjct: 546 LENVIERAAILSDGPELVIDPDVLP-------VTRGGAAPAGAGGQSLVAVEADHIRSVL 598 Query: 601 QVTGGRIQ---EMSALLGIGRTTLWRKMKQHGI 630 TG I+ + +LG+ TL +MK+ GI Sbjct: 599 AQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_C5MQI0 Putative uncharacterized protein n=1 Tax=Clostridium difficile RepID=C5MQI0_CLODI Length = 627 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 115/487 (23%), Positives = 217/487 (44%), Gaps = 32/487 (6%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 + + +I + + ++ E + + +LE G+I+ D+ Sbjct: 154 ITSKYNKPCIETEVEKSSIHASINEAIHLYNIGIEKRINNSITEEILECTHSGIIAIDKN 213 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 + FIN QA R+L + I + LT +L ++K H L + +F+ Sbjct: 214 HSPLFINNQAKRLL----FNQVDKFIKDYLTSDDIL-DSLKNGHSLCNNIISFKGLSLTF 268 Query: 283 DAVITLKPIIETQGTSFILLLHPVE-------QMRQLMTSQLGKVSHTFAHMPQDDPQTR 335 D II+ + + +E ++R+ + S+ TF + Sbjct: 269 DC---FPIIIDKLHFGCVATIQDIENIQSTEKEIRESLISKSHCAKSTFNDILGSSDALM 325 Query: 336 RLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE 395 ++ ++ A+S +++ GE G GK + +Q+IHN S R GP++A+NC + L E Sbjct: 326 HSVNMAKKFAKSDSTIIITGESGTGKEIFAQSIHNYSNRFNGPFVAINCAAIPENILESE 385 Query: 396 FIGG---DRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 G T G+ ELAH GT+FL++I ++ ++Q LL+V+++ +TR+ Sbjct: 386 LFGYVKGAFTGARNEGKAGVFELAHNGTIFLDEIGEISKDVQVKLLRVLQEREVTRIGDT 445 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 +++PI+V+VI T +L ++ N F L+Y L ++ +PPLR R+ I L + + Sbjct: 446 KVVPINVRVITATNKNLVEQIDNNNFREDLFYRLCVLKLDLPPLRERKEDIEQLTYSIIS 505 Query: 512 SLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE 571 K + I D AL L +PGN +L +++E L + D+ + L + Sbjct: 506 HYNK----PVSISDSALKLLSRYDFPGNIRQLKNIVERLVVMCDDNFVD-EHLVSDILIS 560 Query: 572 QAT--------DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 + ++ + + + + EK+ I+ + G + LGI TTLWR Sbjct: 561 EPHFRKDINLIPAINYSPVLSDNKIVDYEKKLILETLEKNNGVKSITANQLGISTTTLWR 620 Query: 624 KMKQHGI 630 K+K++ + Sbjct: 621 KLKKYKL 627 >UniRef50_A0RFE6 Sensory box sigma-54 dependent DNA-binding response regulator n=18 Tax=Bacillus cereus group RepID=A0RFE6_BACAH Length = 579 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 115/484 (23%), Positives = 221/484 (45%), Gaps = 41/484 (8%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD-ATA 242 + L + +++ + L + + ++ +EQG + F++ A+ L +D Sbjct: 101 SIAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNE 160 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSF 299 + G+ TE++ + + H++ + + T PI++ G Sbjct: 161 AVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNR-----NIIATRIPIVKDGKIIGAIG 215 Query: 300 ILLLHPVEQMRQL---MTSQLGKVSH-------------TFAHMPQDDPQTRRLIHFGRQ 343 ++ H ++Q + L ++ K+S+ +F + + + + + + Sbjct: 216 KIMFHDIQQFKALGDQISEMESKLSYYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALK 275 Query: 344 AARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTD 403 ++S VL+ GE G GK L + A+H S RA+G +I +NC L E G + Sbjct: 276 VSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIPRDLLEAELFGYEEGA 335 Query: 404 ----NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 + G+ ++ELA GTLFL++I +++++Q LL+V+++ I R+ ++ +DV+ Sbjct: 336 FTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVR 395 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST 519 IA T +L +V++ F LYY L+ FEI IPPLR R+ + + ++ L + Sbjct: 396 FIAATHRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGS 455 Query: 520 R-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV- 577 + D+ + WPGN EL +V+E + I+V LP +L + +++ Sbjct: 456 NVISFDERVREIFMEHDWPGNIRELENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELY 515 Query: 578 ----------SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + S EK AI A + T G I+E + LLGI R +L+RK+++ Sbjct: 516 HDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAARLLGIHRASLYRKIEK 575 Query: 628 HGID 631 + I Sbjct: 576 YEIS 579 Score = 44.3 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 3/136 (2%) Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 +L N L+ M++G+ G + + N +L T G I+ ++ P Sbjct: 6 RMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTII--PDRK 63 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL-LLHPVEQMRQLMTSQL 317 + + Q L E +Q ++ K E + + ++ + +++ Sbjct: 64 KLVVNQNDSLYRYECKSGNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYE 123 Query: 318 GKVSHTFAHMPQDDPQ 333 ++ + + Q Sbjct: 124 SALNLLSECILGVNEQ 139 >UniRef50_A8ZTX6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A8ZTX6_DESOH Length = 588 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 124/464 (26%), Positives = 215/464 (46%), Gaps = 27/464 (5%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I +++ + LL A + + + L++++ +GV++ D + F + A R+ L A Sbjct: 127 IIKDLVHDLLNRGYYASFSLYKANIERLIDNLHEGVLAHDLGRKIFFFSKGAERITGLSA 186 Query: 241 TASQGRAITELLTLPAVLQQAIK----------QAHPLKHVEATFESQHQFIDAVITLKP 290 G+ ++ +P + + Q V E Q + +D +T+ P Sbjct: 187 VDVIGKNCHDVF-VPRLCGENCSFCDGCEPPTFQKKSYSTVAPEIEGQRKELD--VTVVP 243 Query: 291 IIETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 + + G + L ++ + Q G+ FA + P+ R L H R + Sbjct: 244 LRDPAGRIQGVVAALADQTAFKEAVRGQKGE--DGFAGIIGRTPEMRSLFHQIRDLSVYD 301 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNE 405 PV + GE G GK L+++AIH ES R GP++ +NC + + E G G + Sbjct: 302 VPVNISGETGTGKELVARAIHGESTRRNGPFVPINCGALPEGLVESELFGHVRGSFSGAV 361 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 + R ELAH GT+FL+++ L + Q LL+ +++GV+ ++ + + +DV+VI+ T Sbjct: 362 RDKKGRFELAHNGTIFLDEVAELPMSTQVKLLRFLQEGVLEKVGSEKQTSVDVRVISATN 421 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKID 524 +L V + F LYY L+ I +PPLRMR+ IP L N +R T + I Sbjct: 422 KNLKKEVAKGTFREDLYYRLNVVPIHLPPLRMRKNDIPLLANYFVRHAAMGARTGNVTIT 481 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 DDA+ L AWPGN EL ++I+ L + + +I + LP + + R + Sbjct: 482 DDAMGLLAEYAWPGNVRELQNIIQFLVIKASGNKITAAHLPPEIQGDGTPLPQKRGRRNK 541 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + + + A GG + + LLG+GR TL+R + H Sbjct: 542 LDTGS------VETALAKAGGNKAKAARLLGVGRATLYRFLNDH 579 >UniRef50_C0GEG9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEG9_9FIRM Length = 476 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 214/468 (45%), Gaps = 36/468 (7%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-LDATASQGRAITELLTLP 255 E R +L+ ++ES DG+I D +G + N RV + G+ EL Sbjct: 14 EVRRLKKELDVIIESCYDGIILSDREGRIFRANQSMERVSGGIKVADLLGKTALELEKEG 73 Query: 256 AVLQQA--IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVEQMRQ 311 +L Q+ I PL + ++ IT KP + +G ++ + + ++ + Sbjct: 74 IILSQSKIILGKDPLTLKQNI----RTGVELFITSKPAYDDRGRFLFYVATIRDMTELSR 129 Query: 312 LMTSQLGKVSHTF----------------AHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 L +F M + + + + A++ VL+ G Sbjct: 130 LRQEVEETKDQSFRYYQELLQLRGQILEQDEMVVISRKMKDICERAIRVAQTDTNVLISG 189 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSR 411 G GK ++++ IHN S R +GP++ +NC + L E G + T G++ Sbjct: 190 PSGSGKEMIAKLIHNSSPRKSGPFVQINCGAIPETLLESELFGYEKGAFTGAGRQGKIGL 249 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 +E+A GT+ L++I L+ +Q LL+ I++ VI R+ + I ++V++IA T +L + Sbjct: 250 MEMADLGTILLDEIGDLSPLVQVKLLRAIQEQVIYRVGSTTPIKLNVRIIAATNKNLEKM 309 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 VE+N F LYY L+ I IPPLR RR +I L + L+S ++ T + + A Sbjct: 310 VEENLFREDLYYRLNVIPIHIPPLRERREAIVPLALHFLKSFNQKHGTDKSLSPEVCACF 369 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR------LSTS 585 WPGN EL ++IE + + SD + LP ++ + QA + + +S Sbjct: 370 EEYDWPGNVRELENLIERMVVISDEKVLTPYWLPRNVSSGQAPRSDMSPKQECTAEISLK 429 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + E++AI A + G I++ + LG+ +T+ RKMK G++ Sbjct: 430 QARESAERDAICRALSLH-GSIRKAAKSLGVDHSTVVRKMKSLGLEHK 476 >UniRef50_B7R881 Sigma-54 interaction domain family protein n=3 Tax=Firmicutes RepID=B7R881_9THEO Length = 478 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 127/466 (27%), Positives = 216/466 (46%), Gaps = 36/466 (7%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT----LPA 256 + L LLE++D GV D+ G + N ++++ + + G+ + + + Sbjct: 13 YQKALEILLENIDWGVQITDKDGYTIYYNKASSQIDGIPIDEAIGKHVLAMFPSLSNRES 72 Query: 257 VLQQAIKQAHPLKHVEATFES--QHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMT 314 + + ++ P+ E + + ITL +I+ + I + + +++ LMT Sbjct: 73 TILKVLRTGEPVVGHEQEITNCYGQKVSLFTITLPIVIDGEICGAIDISKNLSEIKNLMT 132 Query: 315 SQL------------------GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + + +TF + + L ++ A+S+ PV + GE Sbjct: 133 KVIDLREEVRNNRKKSAVKENEEAYYTFDDIIGESKVITELKCKAQKIAKSNSPVFVYGE 192 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRLE 413 G GK LL QAIHN S R GP+IA NC + + G G T EN R +E Sbjct: 193 TGTGKELLVQAIHNASPRKNGPFIAQNCAALPENLMESILFGTVKGSFTGAEN-RPGLVE 251 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LA GGTLFL++I L+++LQ+ LL+ +++G I R+ ++ +DV+VIA + +E Sbjct: 252 LADGGTLFLDEITSLSLDLQAKLLRFLQEGYIRRIGDSKVRKVDVRVIAASNISPYEALE 311 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + L+Y L + +PPLR R+ IP LV + ++ + +K I ++ L+ Sbjct: 312 KKILRPDLFYRLSTIVLYVPPLRERKSDIPLLVKHFIKEFNWQLGKDIKGISEEVERALM 371 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT-------EQATDDVSATRLSTS 585 S +WPGN EL VIE A ++ I++ DLP+H+ ++ D Sbjct: 372 SLSWPGNVRELKGVIEYAANFCESEIIQLHDLPDHILRNAFIEGEKEIAVDTIGIEGDLR 431 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 A+VE E I + T G I + +LGI R TL K+K I+ Sbjct: 432 SFLAKVEYELITKTLKKTNGNISRAAEILGIPRQTLQYKIKMLKIN 477 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional r... 771 0.0 UniRef50_P26047 Signal-transduction and transcriptional-control ... 766 0.0 UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1... 764 0.0 UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis ... 763 0.0 UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional r... 761 0.0 UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis ... 744 0.0 UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol me... 743 0.0 UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional r... 738 0.0 UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clo... 727 0.0 UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus ana... 718 0.0 UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional r... 714 0.0 UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Ta... 712 0.0 UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional r... 705 0.0 UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis ... 703 0.0 UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional r... 690 0.0 UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional r... 689 0.0 UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Des... 687 0.0 UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional r... 686 0.0 UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional r... 686 0.0 UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis ... 684 0.0 UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional r... 682 0.0 UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfi... 682 0.0 UniRef50_A5G7C5 GAF modulated sigma54 specific transcriptional r... 682 0.0 UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfi... 681 0.0 UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional r... 678 0.0 UniRef50_C0QHF5 Signal-transduction and transcriptional-control ... 676 0.0 UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gamm... 676 0.0 UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydro... 672 0.0 UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2... 671 0.0 UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional r... 670 0.0 UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional r... 669 0.0 UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional r... 669 0.0 UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional r... 668 0.0 UniRef50_A5N2U4 Predicted signal transduction and transcriptiona... 668 0.0 UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular orga... 667 0.0 UniRef50_P45512 Glycerol metabolism operon regulatory protein n=... 665 0.0 UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=D... 664 0.0 UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional r... 664 0.0 UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional r... 664 0.0 UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional r... 664 0.0 UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional r... 662 0.0 UniRef50_A1VK76 GAF modulated sigma54 specific transcriptional r... 662 0.0 UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis ... 661 0.0 UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=7... 660 0.0 UniRef50_Q6AR13 Related to sigma54-dependent transcriptional reg... 659 0.0 UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional r... 658 0.0 UniRef50_Q0JZT0 Transcriptional regulator, PspF-family n=2 Tax=B... 657 0.0 UniRef50_A1AMU4 GAF modulated sigma54 specific transcriptional r... 656 0.0 UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis ... 653 0.0 UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional r... 652 0.0 UniRef50_Q3A7P8 GAF modulated sigma54 specific transcriptional r... 651 0.0 UniRef50_Q3JGJ2 Sigma-54 activated regulatory protein n=63 Tax=B... 650 0.0 UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory p... 643 0.0 UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis ... 643 0.0 UniRef50_A8I2P3 Transcriptional regulator n=6 Tax=Proteobacteria... 642 0.0 UniRef50_C4KAI6 GAF modulated sigma54 specific transcriptional r... 642 0.0 UniRef50_A1TS58 GAF modulated sigma54 specific transcriptional r... 642 0.0 UniRef50_B2IEK7 GAF modulated sigma54 specific transcriptional r... 640 0.0 UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4... 639 0.0 UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n... 637 0.0 UniRef50_C9YDA0 Putative uncharacterized protein n=1 Tax=Curviba... 637 0.0 UniRef50_A7MAQ9 BmoR n=1 Tax=Thauera butanivorans RepID=A7MAQ9_9... 637 0.0 UniRef50_P28614 Acetoin catabolism regulatory protein n=4 Tax=Pr... 636 0.0 UniRef50_Q2RVW2 Sigma54 Specific Transcriptional Regulator conta... 635 e-180 UniRef50_Q1H4H3 GAF modulated sigma54 specific transcriptional r... 635 e-180 UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional r... 632 e-180 UniRef50_B2JX43 GAF modulated sigma54 specific transcriptional r... 632 e-179 UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional r... 630 e-179 UniRef50_Q2BKZ6 Sigma-54 dependent transcriptional regulator n=1... 630 e-179 UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing pr... 629 e-179 UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulato... 628 e-178 UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas Re... 627 e-178 UniRef50_C0Z5M5 Acetoin catabolism regulatory protein n=2 Tax=Ba... 625 e-177 UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional r... 623 e-177 UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional r... 622 e-176 UniRef50_A2SCN8 Transcriptional regulator AcoR n=5 Tax=Betaprote... 622 e-176 UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis ... 620 e-176 UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 T... 620 e-176 UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis ... 619 e-176 UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional r... 619 e-175 UniRef50_A9BXK1 GAF modulated sigma54 specific transcriptional r... 617 e-175 UniRef50_Q47ZM3 Acetoin catabolism regulatory protein n=2 Tax=Al... 617 e-175 UniRef50_A1BBZ5 GAF modulated sigma54 specific transcriptional r... 615 e-174 UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibri... 615 e-174 UniRef50_B1XZ38 GAF modulated sigma54 specific transcriptional r... 614 e-174 UniRef50_D1RT04 Transcriptional regulatory protein n=1 Tax=Serra... 613 e-174 UniRef50_D0FRF9 Transcriptional regulator n=2 Tax=Erwinia pyrifo... 612 e-173 UniRef50_Q02SW3 Transcriptional regulator AcoR n=12 Tax=Pseudomo... 611 e-173 UniRef50_B1Y0Y8 GAF modulated sigma54 specific transcriptional r... 611 e-173 UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional r... 610 e-173 UniRef50_C8Q8H1 GAF modulated sigma54 specific transcriptional r... 610 e-173 UniRef50_A5G298 GAF modulated sigma54 specific transcriptional r... 608 e-172 UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax... 606 e-171 UniRef50_B1J8J4 GAF modulated sigma54 specific transcriptional r... 605 e-171 UniRef50_C5CW42 GAF modulated sigma54 specific transcriptional r... 604 e-171 UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional r... 601 e-170 UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis ... 600 e-170 UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteob... 593 e-168 UniRef50_A8VUU9 Alanine dehydrogenase n=1 Tax=Bacillus selenitir... 593 e-168 UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional ... 590 e-167 UniRef50_C8W252 PAS modulated sigma54 specific transcriptional r... 589 e-166 UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR... 585 e-165 UniRef50_B1J9J9 GAF modulated sigma54 specific transcriptional r... 581 e-164 UniRef50_Q2S6Z3 Transcriptional activator of acetoin/glycerol me... 580 e-164 UniRef50_A9BZJ5 GAF modulated sigma54 specific transcriptional r... 579 e-163 UniRef50_B5EP01 Sigma54 specific transcriptional regulator, Fis ... 579 e-163 UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escheri... 578 e-163 UniRef50_D0I9V7 Sigma-54 dependent transcriptional regulator n=1... 578 e-163 UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis ... 576 e-163 UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4... 576 e-162 UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Brady... 576 e-162 UniRef50_B1JK03 GAF modulated sigma54 specific transcriptional r... 574 e-162 UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clost... 571 e-161 UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum ... 571 e-161 UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional r... 571 e-161 UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional r... 571 e-161 UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia Rep... 571 e-161 UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional r... 570 e-161 UniRef50_B2TFZ7 GAF modulated sigma54 specific transcriptional r... 570 e-161 UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2... 570 e-161 UniRef50_B2A661 PAS modulated sigma54 specific transcriptional r... 567 e-160 UniRef50_B1Y1U6 GAF modulated sigma54 specific transcriptional r... 566 e-160 UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID... 564 e-159 UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional r... 563 e-159 UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional r... 561 e-158 UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional r... 559 e-157 UniRef50_C8VXU8 Putative sigma54 specific transcriptional regula... 559 e-157 UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevi... 558 e-157 UniRef50_A3JL03 Sigma-54 Specific Transcriptional Regulator cont... 558 e-157 UniRef50_A4YW25 Putative sigma-54-dependent transcriptional regu... 556 e-157 UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional r... 556 e-156 UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis ... 555 e-156 UniRef50_B3DWD7 Transcriptional activator of acetoin/glycerol me... 555 e-156 UniRef50_A5EHS9 Putative sigma-54-dependent transcriptional regu... 555 e-156 UniRef50_A6CUY8 Hypothetical sigma-54 dependent transcriptional ... 555 e-156 UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with ... 555 e-156 UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis ... 554 e-156 UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regula... 554 e-156 UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium y... 554 e-156 UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-typ... 554 e-156 UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1... 553 e-156 UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 553 e-156 UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 ... 552 e-155 UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis ... 552 e-155 UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillu... 552 e-155 UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional r... 551 e-155 UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 ... 551 e-155 UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 ... 551 e-155 UniRef50_D0LRM2 GAF modulated sigma54 specific transcriptional r... 551 e-155 UniRef50_A1K9F7 Sigma-54-dependent transcriptional regulator n=1... 550 e-155 UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional r... 548 e-154 UniRef50_P54529 Putative sigma L-dependent transcriptional regul... 547 e-154 UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Ni... 546 e-154 UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID... 546 e-154 UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protei... 546 e-154 UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis ... 546 e-153 UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis ... 545 e-153 UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1... 545 e-153 UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sen... 545 e-153 UniRef50_C9S238 PAS modulated sigma54 specific transcriptional r... 545 e-153 UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis ... 545 e-153 UniRef50_A7IC82 GAF modulated sigma54 specific transcriptional r... 545 e-153 UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis ... 543 e-153 UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis ... 543 e-153 UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional r... 543 e-153 UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional r... 542 e-152 UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillu... 542 e-152 UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis ... 542 e-152 UniRef50_Q89DZ6 Transcriptional regulatory protein n=2 Tax=Brady... 541 e-152 UniRef50_B8G208 Sigma54 specific transcriptional regulator, Fis ... 541 e-152 UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional r... 540 e-152 UniRef50_B8FUV2 Sigma54 specific transcriptional regulator, Fis ... 539 e-151 UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis ... 538 e-151 UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional r... 538 e-151 UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional r... 538 e-151 UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional r... 537 e-151 UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum ... 537 e-151 UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis ... 537 e-151 UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2... 536 e-151 UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium Re... 536 e-151 UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PA... 535 e-150 UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis ... 535 e-150 UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis ... 535 e-150 UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostri... 534 e-150 UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis ... 534 e-150 UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional r... 533 e-150 UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis ... 533 e-150 UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional r... 533 e-150 UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis ... 533 e-150 UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=1... 533 e-149 UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis ... 533 e-149 UniRef50_B2A8I7 Putative sigma54 specific transcriptional regula... 532 e-149 UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis ... 532 e-149 UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5... 531 e-149 UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regu... 531 e-149 UniRef50_B8FXN8 Putative sigma54 specific transcriptional regula... 531 e-149 UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfot... 531 e-149 UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Cl... 531 e-149 UniRef50_C1PBV8 Putative sigma54 specific transcriptional regula... 531 e-149 UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional r... 531 e-149 UniRef50_B8G264 Putative sigma54 specific transcriptional regula... 531 e-149 UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis ... 531 e-149 UniRef50_B8G0N2 Sigma54 specific transcriptional regulator, Fis ... 531 e-149 UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional r... 530 e-149 UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=1... 530 e-149 UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosi... 530 e-149 UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional r... 530 e-149 UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3... 529 e-148 UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with ... 529 e-148 UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol me... 528 e-148 UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding respo... 528 e-148 UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional r... 528 e-148 UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis ... 527 e-148 UniRef50_Q1D2C7 Sigma-54 dependent transcriptional regulator, Fi... 527 e-148 UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional r... 527 e-148 UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-typ... 527 e-148 UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomacul... 526 e-148 UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus claus... 526 e-148 UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum ... 526 e-148 UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding respo... 526 e-147 UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis ... 526 e-147 UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional r... 526 e-147 UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales Rep... 526 e-147 UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3... 524 e-147 UniRef50_Q7WAQ0 Putative sigma-54-dependent transcriptional regu... 524 e-147 UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3... 524 e-147 UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional r... 524 e-147 UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis ... 524 e-147 UniRef50_Q3A203 Two component signal transduction response regul... 523 e-147 UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional... 523 e-147 UniRef50_B2A7X5 Putative sigma54 specific transcriptional regula... 523 e-146 UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halother... 522 e-146 UniRef50_Q312T1 Putative transcriptional regulator, Fis family n... 522 e-146 UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional r... 521 e-146 UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus... 521 e-146 UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1... 521 e-146 UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis ... 521 e-146 UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=... 520 e-146 UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional r... 520 e-146 UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional r... 520 e-146 UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostri... 520 e-146 UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrop... 520 e-146 UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional... 520 e-146 UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2... 519 e-145 UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis ... 519 e-145 UniRef50_B8EPN2 GAF modulated sigma54 specific transcriptional r... 519 e-145 Sequences not found previously or not previously below threshold: UniRef50_Q88QE8 Sigma-54 dependent transcriptional regulator n=2... 608 e-172 UniRef50_Q5VJD9 Sigma 54-dependent transcriptional factor n=1 Ta... 597 e-169 UniRef50_A2SP83 Sigma-54 dependent transcriptional activator n=4... 569 e-160 UniRef50_Q5P1R8 Probable transcription regulator protein n=2 Tax... 557 e-157 >UniRef50_C9RXL1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Geobacillus RepID=C9RXL1_GEOSY Length = 643 Score = 771 bits (1993), Expect = 0.0, Method: Composition-based stats. Identities = 161/633 (25%), Positives = 298/633 (47%), Gaps = 16/633 (2%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 N + P+I SW R K M + + ++++ +E Sbjct: 18 HNELDPDLPPMIRDSWLRSKKAMVDPFRPYGWIKEIDN-----EKYRSLIDWSLPLMEGL 72 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 + + + + +E +L GD + L + +GF G +E ++GT A+ + Sbjct: 73 YSIVKGSGFLVILCNENGQLLLSIGDREPLARAEEIGFIAGADWSEQVMGTNAIGTSIAI 132 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 + ++ A++H+ ++ +W A P+ D GR+ G + ++ P E+ + L + ++ + Sbjct: 133 DRPIQVFAEEHYTKICQSWTCSAAPIHDPDGRIIGVLNMSGPYEKVHSHTLGMVVSAVKA 192 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L + L A +M +G++ D G + N Q ++ R+ + Sbjct: 193 IEYQLKLHENAEKNVMMQRFLEATTNNMKEGILIIDRDGKIVKANNQLKKLFRIPQLQLE 252 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLL 303 + + +L P++ + + + + + ++ PI E + ++++ Sbjct: 253 EKKLDDLFNDPSICSNHPLHLQN-QELHLSVKPSNAVHHVLVDKIPIYEKKERIGSMIIV 311 Query: 304 HPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 +E++RQ + G + TFA M P ++ R AA + VL+ GE G GK Sbjct: 312 KEIEKVRQFVNHLSGNQAKITFADMIGQHPCFIEKMNEARLAAATDSNVLILGESGTGKE 371 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENG-RLSRLELAHGG 418 +++QAIHNES+R P+IA+NC L E G T + G + ELA+GG Sbjct: 372 MVAQAIHNESKRRNKPFIAINCGGIPRDLLGSELFGYVDGAFTGAKKGGSAGKFELANGG 431 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I +++E+Q LL+VI++ + R+ ++IP+DV++IA T DL V++ F Sbjct: 432 TLFLDEIGEMSLEMQVLLLRVIQEKEVMRIGGHKVIPVDVRIIAATNKDLRREVQKGSFR 491 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWP 537 L++ L+ I +PPLR R+ IP LV + + L + +I D L L+ WP Sbjct: 492 EDLFFRLNVMPIVLPPLRERKEDIPLLVRHFIERLAHKRDKPFPEIRSDFLEALMQYDWP 551 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL ++IE + + +DLPE +F + V R + +S E++K++II Sbjct: 552 GNIRELQNMIERVLNQCTKPVLTAADLPEEIFQPSCSSQV---RENVDISRNEIKKQSII 608 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + G I + + LGI R+T +R+M + I Sbjct: 609 EALKQCNGNISKAARYLGISRSTFYRQMDKWNI 641 >UniRef50_P26047 Signal-transduction and transcriptional-control protein n=10 Tax=Clostridium RepID=STC_CLOBE Length = 632 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 145/628 (23%), Positives = 283/628 (45%), Gaps = 10/628 (1%) Query: 13 SPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + +I S +RC+ + P + F I ++ KA++ + + +E + ++ Sbjct: 8 NEIIKKSHKRCSNYGIKIDIPCPSKILRDEEFNVIIQKNKALIEIARPFMEILYNFLKGS 67 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 +L+ ++ +L+ GD ++ +G +G +E GT + A +++ Sbjct: 68 GFSLYFTEKNGVVLTIIGDQDIIRDQIQMGIIEGADMSEKSAGTNGIGTAFAENISLQIS 127 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 ++HF +V W ++ + D G + G + L + L L +A + + N L Sbjct: 128 GEEHFIKVFQIWTCSSSVVHDEDGNIIGCLNLTGRRQLAHPHTLGLVVAAVKSIENHLKV 187 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 E + LN + +S++ G+ + D +G ++ IN A +L ++ + + + Sbjct: 188 KKTQNELVKTYQYLNKITDSVNLGIFAVDTKGIIKAINKSACDMLHINEEDVINKNVDTV 247 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 L + Q ++ + E + + + + + + T + + ++ + Sbjct: 248 LDSWKHILQRLRNGQSYEDEEIMYSDKKKRFNINVYPIKDKNSNITGMVGIFKDIQNVYN 307 Query: 312 LMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L+ + + +TF + +RL + + S VL+ GE G GK L++Q+IHN Sbjct: 308 LVNKYINRTAKYTFDDIIGQSEAMKRLKEQIKSISNSPSTVLIQGESGTGKELIAQSIHN 367 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGR-LSRLELAHGGTLFLEKIE 426 S R + ++A+NC + + E G + T + G + ELA+ GTLFL++I Sbjct: 368 NSNRRSKSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGCPGKFELANEGTLFLDEIG 427 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +++Q LL+V+++G ITR+ + + +DV++IA T +L +E F LYY L Sbjct: 428 EMPLDMQVNLLRVLQEGCITRIGGNKCVDVDVRIIAATNKNLKKEIEDGNFREDLYYRLS 487 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYS 545 I +PPLR R G I L+ + L+ + + +I + L+S WPGN EL + Sbjct: 488 VIPIYVPPLRERNGDIGILIEHFLKIKADKLGKLIPEIRKNIYENLLSYGWPGNVRELEN 547 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 IEN+ + N + + + + S E+EK AI GG Sbjct: 548 CIENIVNMNGNTSFNFEN--RTIKKDVNCYSDVSLEYDMC-SLEELEKRAISICINQCGG 604 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGIDAG 633 I + +LGI R+TL+ K+K++ I Sbjct: 605 NISKACRILGINRSTLYIKIKKYNIKVR 632 >UniRef50_Q0AWA7 Acetoin operon expression regulatory protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWA7_SYNWW Length = 671 Score = 764 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 157/647 (24%), Positives = 292/647 (45%), Gaps = 23/647 (3%) Query: 8 DGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + IA +WERC +L N + I + K ++ + + + Sbjct: 26 DREALPAEIADAWERCARLGANPYAGNSKRRLAESEVQEILQHHKELIDVARPFMAKLHR 85 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++A + + +E ++ GD T++ + G E IG + A + + Sbjct: 86 FVAGSGFVVLLANERGYLMETIGDQDTIRGAENIDLLPGACWREEEIGNNGVGTAVVLKK 145 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +H+ + +W P+ + ++ G + ++ PVE+T L + +A + Sbjct: 146 PVQVSGKEHYCRKHHSWTCSGAPILNEDKQVIGILEMSGPVEKTHLHTLGMVVAAVEAIS 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + L E N+L + ++ DG++ D QG + IN R+L ++ G Sbjct: 206 DQLRIQQKNRELLLLSNRLGYIYNTVSDGIMVIDMQGIITQINPAVERILGQNSRKIMGI 265 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLH 304 + EL +++ + + E T + + +++ K I++ QG ++ ++ Sbjct: 266 PVKELFEPGQRVEEMLDSGRDFSYSELTL-GIGEAVQCLVSGKAIMDEQGKVNGGVIFIN 324 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P+ ++ L+ G + S F+ + + R++ AA S +LL GE G GK + Sbjct: 325 PINHIKSLVNRFSGAQASLHFSDIIGQSQELSRVVRIASLAASSESNILLEGESGTGKEV 384 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGT 419 +QAIHN S R P+IAVNC L E G T GR + ELA GGT Sbjct: 385 FAQAIHNASSRRDAPFIAVNCGAIPRELLGSELFGYVDGAFTGARRGGRPGKFELASGGT 444 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + + Q +LL+V+++ +TR+ ++IP+DV+VI + L VE+ F R Sbjct: 445 IFLDEIGEMPLGKQVSLLRVLQERTVTRIGGDKVIPVDVRVICASNRKLHEEVEKGNFRR 504 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 L+Y L+ IT+PPLR R+ IP L ++ L+ + ++ +++ + + L WPG Sbjct: 505 DLFYRLNVIAITLPPLRQRKEDIPLLFHHFLQDISQKLGVKTPQVETEVIHSLQDYDWPG 564 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA-EVEKE--- 594 N EL +V+E + ++ RI LP+ + A S + E+ Sbjct: 565 NVRELQNVVERMVNIAEESRISREHLPQEISHPAARSLKELANCEDSQLLSLSTERRKRK 624 Query: 595 ---------AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 I+ + GG + +++ LG+ R T++RK+KQ+ I Sbjct: 625 EMEQEREQEEIMALLVLHGGNVSQVAKSLGVSRNTIYRKIKQYRIKI 671 >UniRef50_Q1K388 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K388_DESAC Length = 648 Score = 763 bits (1971), Expect = 0.0, Method: Composition-based stats. Identities = 157/626 (25%), Positives = 277/626 (44%), Gaps = 11/626 (1%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 +S + A SW RC +L + +V + ++T+ +E+ + ++ Sbjct: 25 LSQIAANSWRRCLQLNVDPSRHVRVDMGARELKKRIEAHQDLVTVATPTMENIYNFVNDS 84 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D +L G+ +T + G E + GT A+ + + +K Sbjct: 85 GFQVVLSDNHGYLLKVLGERKTPCPSTLARLFPGANWNESLRGTNAIGTCLVERKPLKIH 144 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 A +HF + A P+F +G L + L+ L + +A A + N L Sbjct: 145 ASEHFFEENQTLTCSAAPIFSPEGELLAVLNLSGDHRYANDLALGMVVAGANAIENQLQL 204 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + + + +++SM +G++ D G + IN AR+L + A + G I+++ Sbjct: 205 HRVNTKLYASYKYSDTIIQSMSEGLVIVDPAGEITKINQVGARILGVSAREAIGLHISKM 264 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 A + ++ ++ E + + TL Q + +L P ++ Sbjct: 265 FGDNAPVLDLLRTGIAYENKEVMLDGGQRAFYCSATLLRDDYGQMIGAVSVLRPRSSSKR 324 Query: 312 LM-TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + ++F M D ++ H +A+RS VL+ GE G GK L++Q IHN Sbjct: 325 SRCLPTTQRARYSFDEMIGDSDAMKKTRHMAERASRSLSTVLIQGESGTGKELIAQGIHN 384 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIE 426 S R P++AVNC + L E G + T + G+ ++E+A+GGTLFL++I Sbjct: 385 ASSRHGQPFVAVNCAAITETLLESELFGYEEGSFTGAKKGGQPGKVEMANGGTLFLDEIG 444 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +++Q LL+++++ I R+ + I IDV++IA T +L V++ F + LYY L+ Sbjct: 445 DMPLQMQVKLLRMLQERRICRVGSSEEISIDVRIIAATHQNLKQAVQEGCFRKDLYYRLN 504 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYS 545 ITIPPLR R +PAL + L RF + I + S WPGN EL + Sbjct: 505 VLPITIPPLRERMDDLPALAKFLVTKLSGRFGKEPVAISSLFMRACQSYDWPGNIRELEN 564 Query: 546 VIENLALSS-DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 VIE D + + + EVE E ++ A +++ Sbjct: 565 VIERAMNMVDDGDALTAE----MIDLDPVELPADHAIPDGVRPLKEVEMEMVVRALEMSR 620 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G I S+LLGI R T++RK+K++ I Sbjct: 621 GNIVHASSLLGISRNTIYRKIKEYDI 646 >UniRef50_A1AME4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=A1AME4_PELPD Length = 661 Score = 761 bits (1967), Expect = 0.0, Method: Composition-based stats. Identities = 155/627 (24%), Positives = 285/627 (45%), Gaps = 11/627 (1%) Query: 11 GISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 I P +A SW+RC + R ++ + ++A+E+ + ++ Sbjct: 31 RIRPEVANSWQRCRNYKVNPYDIGDQAVNQLELRERLHRNHHLVKIARSAMENLYTFVRG 90 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D+ A +L GD + + + + G E GT A+ A + Q V+ Sbjct: 91 SGFEIVLSDQHAYLLEVVGDRDIISKGTKVQLCPGGNWHESSKGTNAIGTALMEKQPVQI 150 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +A +HF + A P+FD +G + G + ++ A L + +A + L Sbjct: 151 LAWEHFCRPNHFLTCSAAPIFDPEGEIVGVLNISGDYRYANAHTLGMVVAAVNAIEKQLC 210 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + ++ LLES+ DG++S + G + +N+ ++ ++ A++G+ I Sbjct: 211 LHKVTSKLYISYKYSQTLLESISDGIVSVNNSGIIAEMNSSGGKIFGINHQAAKGKHINT 270 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ-M 309 ++ A + + + E E+Q + + + TL + +L + Sbjct: 271 VMRQQAPILSLLATGEGYRDREILLENQGKKVFSSATLLLDDSGNTIGAVAVLRQARDAL 330 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + ++F + + P + R AA S +LL GE G GK L +Q+IH Sbjct: 331 KSRRAQHSSLPRYSFDDIIGESPAISEAKEWARIAANSGSTILLSGESGTGKELFAQSIH 390 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKI 425 N S GP+IA+NC +A + E G T + G + E A GTLFL++I Sbjct: 391 NVSSFRNGPFIAINCAAIPEALVESELFGYAEGTFTGAKKGGSPGKFESADRGTLFLDEI 450 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + +Q+ +L+VI++ I+R+ + +++++IA+T +L V F L+Y L Sbjct: 451 GDMPLTVQAKVLRVIQEKKISRVGSSEERQVEIRIIASTHKNLRTEVLNGNFREDLFYRL 510 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA-LARLVSCAWPGNDFELY 544 + + +PPLR R G IP + + + + R + + +DA +L S WPGN EL Sbjct: 511 NVLVVQVPPLRDRGGDIPLVACHLVEKISARMGKQRIVGEDAFWGKLASHNWPGNVRELE 570 Query: 545 SVIENLALSSDN-GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 + IE + SD+ G + L + A + +S E+EK+AI A + Sbjct: 571 NAIEQAVVRSDDSGVLLARHLTFDVVESVA----PTGGRAEIVSLTEMEKQAITAALHLY 626 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGI 630 G IQ+ ++ LGIGR TL+RK++++GI Sbjct: 627 DGNIQKAASKLGIGRNTLYRKIREYGI 653 >UniRef50_A6TWZ7 Sigma54 specific transcriptional regulator, Fis family n=24 Tax=Clostridiaceae RepID=A6TWZ7_ALKMQ Length = 645 Score = 744 bits (1922), Expect = 0.0, Method: Composition-based stats. Identities = 159/634 (25%), Positives = 294/634 (46%), Gaps = 14/634 (2%) Query: 13 SPLIATSWERCNKLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + S +R +G + +LT ++ +E+ + ++ Sbjct: 4 KDYVKRSHQRSIDFGVEYNRMYSSKILKGNELQIKLEANRELLTTAKSFMEELYNFVEGS 63 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + D+ CIL GD + L L G Y E IGT A+ A G V+ Sbjct: 64 GFFAILTDQEGCILEVLGDDKVLAVSHGLEMIPGAYMDEEHIGTNAMGTALAEGIPVQIS 123 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 ++HF + W A P+ +S G GT+ L E + L + A A + +L + Sbjct: 124 GEEHFVKAYHRWTCSAAPIRNSIGEAIGTLNLTGYSEYVHSHTLGMVAAAANAIAYMLES 183 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + + + +++S+D G+ + +G ++ IN A+ +L+ G +L Sbjct: 184 KEVNNKLFLAKKSIETIVDSIDAGIFTVGPKGYMKTINQVASHMLQYTNDEILGMEGIKL 243 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET--QGTSFILLLHPVEQM 309 + A +Q++++ EA +++ I ++ PI++ + ++ +++M Sbjct: 244 IEGWAGVQESVESNISYVEEEAYIKTKKGKIHCTLSAYPILDESKNLQGIVCMIREIKKM 303 Query: 310 RQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 R+L+ +GK +TF + D R++++ ++ + S VL+ GE G GK + +Q+I Sbjct: 304 RRLVNKMIGKQALYTFDKIIGRDENFIRMVNYAKKISDSPSTVLIMGESGTGKEVFAQSI 363 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEK 424 HN SER P++A+NC + E G + T + G + ELA GGTLFL++ Sbjct: 364 HNHSERRDEPFVAINCGALPRNLIESELFGYEDGAFTGAKRGGHPGKFELADGGTLFLDE 423 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + +++Q+ LL+V+++G + R+ + I +DV++IA T DL VE+N F LYY Sbjct: 424 IGEMPLDMQANLLRVLEEGKLFRVGGNKEIAVDVRIIAATNKDLRDEVERNNFRGDLYYR 483 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L+ + +PPLR R+ IP L++ + + + + D + ++++ W GN EL Sbjct: 484 LNVLPLILPPLRERKSDIPLLIDYFMTIKALKLKKSMTYLPRDIMDQMINYTWRGNIREL 543 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 +VIENL S + + +L + + + S ++EK I Sbjct: 544 ENVIENLMNSGELNFLERVEL-----SSTSNESSPRVYSLESEPLEDMEKRHIHQVLTKY 598 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 G + + + LGIGR TL+RKM ++ ID + R Sbjct: 599 EGNVSQAAEALGIGRNTLYRKMAKYKIDCSKMTR 632 >UniRef50_A5CY60 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5CY60_PELTS Length = 692 Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats. Identities = 160/637 (25%), Positives = 288/637 (45%), Gaps = 13/637 (2%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 + R I P + +SW+R K P K ++ + LE Sbjct: 52 DKVRIIRPEVLSSWKRSMKRGIDPYKLHPILLTQKNLEYRLEENKELIDIASPFLEAFIS 111 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + + +LD IL + G+ + L+ G G +E GT A++LAA+ G+ Sbjct: 112 NLKGSGFRVDLLDRDLYILKQFGEAEVLETAQKQGSCPGASRSEHATGTNAINLAAVLGR 171 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 ++ + +H+ L W A P+FD G L G + +A + L +T+A+ + + Sbjct: 172 PIQLVGPEHYNAQLQYWTCSAAPIFDENGELLGVVNVAGHYLKVHQHTLGMTVALGKAIE 231 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L L E + ++++S+ +G+++ D QG + +N A +L L + Sbjct: 232 FSLRQSRLRREKELAGKYIESIVDSISEGLVALDGQGRITVLNRTAGELLGLKPQDVLNQ 291 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 +L + + +A + L + E F +++ A+ + P+ + + + + Sbjct: 292 PADAVLGQHSTVVEAFRSGEALLNRELVFNCKNKQRTAIGNVVPVANNRANGVLAVFKGL 351 Query: 307 EQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 R + + G K F + P+ ++++ RQAA VL+ GE G GK + + Sbjct: 352 SHARGFVKNMAGFKAYFNFEDLKGSGPRFAQVVNLARQAAALPSNVLILGESGTGKEMFA 411 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLF 421 QAIHN S + GP++ +NC + E G + T + G+ + +LA GTLF Sbjct: 412 QAIHNASSSSNGPFVGINCAAIPAELIESELFGYEGGAFTGAKREGQPGKFQLAAHGTLF 471 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L+++ +++ +Q+ LL+V++ TR+ IP++ ++IA + DL V Q F L Sbjct: 472 LDEVNAMSMTMQAKLLRVLQNRCFTRIGGCVEIPLEARIIAASNKDLWEEVRQGNFREDL 531 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 Y L+ I IPPLR R+ + L+ + R K+ I + A +++ WPGN Sbjct: 532 LYRLNVVTIEIPPLRERKDDLVHLIEHFCREHSKKLKFEFTISEPARKLMMAYHWPGNVR 591 Query: 542 ELYSVIENLALSS---DNGRIRVSDLPEH--LFTEQATDDVSATRLSTS---LSFAEVEK 593 EL +VIE A+ + + I DL + + D A + + +EK Sbjct: 592 ELENVIERCAVMALSRSSHSIEEQDLLSYPGIRKSLEADKNPAVEVPPPQFDDNLESLEK 651 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A+ A + TGG I + LG+ R TL+RK+K++GI Sbjct: 652 RAVEEALKQTGGNITRAAGRLGVTRKTLYRKIKKYGI 688 >UniRef50_Q1JWW3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JWW3_DESAC Length = 658 Score = 738 bits (1906), Expect = 0.0, Method: Composition-based stats. Identities = 166/642 (25%), Positives = 296/642 (46%), Gaps = 20/642 (3%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I SW+RC ++ V HQ +++ +K ++L + ++ +E Sbjct: 17 DSAVDKAEIRHSWQRCREMDVDPYDGVSHQLLTPGQISALLGSQKLYISLVRHFMKQLYE 76 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++ +F+ + IL GDP+T + + + G E GT + A G+ Sbjct: 77 FVKGSGFIVFLANREGYILEALGDPETFKAAAQVNLIQGACWVEFAGGTNGIGTALAIGR 136 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +H+ Q L +W A PL+D G ++G + ++ P E+T L + +A A + Sbjct: 137 PVQVSGCEHYCQKLHSWTCSAAPLYDECGDISGVLQMSGPCEKTHPHTLGMVVASAEAIR 196 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L E QL+ L ++M DG + D G + +N A +V G Sbjct: 197 KQLSVWQRNNELVLANAQLSHLFQTMSDGALVIDADGRVIQVNPVARKVFG---KELSGE 253 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ--GTSFILLLH 304 + ++T A I H K ++ ++ + ++A++T+KP+ + + ++ + Sbjct: 254 KLNRIITA-ADSPDLISSTHSCKDLDVVLHTETEPVEALLTVKPLKDDNSDQSGAVVFFN 312 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P+ +M++L+ G + + F+ + + + I+ R+AA + VL+ GE G GK L Sbjct: 313 PIRKMKKLVNRFGGAQATFHFSDIIGEHDSVKAAINMARKAADNLSHVLILGESGTGKEL 372 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGT 419 L+QAIHN S R GP++AVNC +A E G T GR + E+A GGT Sbjct: 373 LAQAIHNHSMRRNGPFLAVNCAALPRDLIASELFGYTSGAFTGASPKGRPGKFEMASGGT 432 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 L L++I + ++ Q+ LL+V++ +TRL + R IP+DV+VI T +L V + F + Sbjct: 433 LLLDEIGDMPLDQQATLLRVLQDKHVTRLGSERAIPVDVRVICATNKNLLDAVSKGHFRQ 492 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPG 538 LYY L+ I +PPLR R + L L+ + R R +D+ + L+ WPG Sbjct: 493 DLYYRLNVTRIDVPPLRERGRDVELLFRFLLKKISLRLHQARPHVDEAVVTALLHYGWPG 552 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-------LSTSLSFAEV 591 N EL +V+E + + + + + LP + E + E Sbjct: 553 NVRELENVVERMIHTVEEETLHCAHLPREICCETPVGRALPDSVVTTQDAATLKQVVGEQ 612 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 E+ +++ Q G I ++ + + R T++RKM + I Sbjct: 613 ERRLLVDLLQRYQGNISLIAREMAVSRNTIYRKMHHYNISRD 654 >UniRef50_A5MZI8 Predicted transcriptional regulator n=13 Tax=Clostridium RepID=A5MZI8_CLOK5 Length = 656 Score = 727 bits (1877), Expect = 0.0, Method: Composition-based stats. Identities = 157/646 (24%), Positives = 301/646 (46%), Gaps = 23/646 (3%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 FN + I P I +SW RC K + N P+ F +I KK + + + + Sbjct: 16 EFNEIPKDIKPDILSSWIRCKKYGVEKDNNPPNIIPKDEFDAILDEKKEFIEICLPIMLN 75 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 +E + ++ + DE A IL G+ + + Q L F +G E +GT A+ Sbjct: 76 LYEILKNTNYSIILTDENAVILKILGNEKIMAQNRDLDFLEGRRWKEEDVGTNAIGTCIY 135 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + ++T+ +H+ + W A+P+ DSKG + G I L+ E L + + + Sbjct: 136 LDKPIQTLGAEHYSKRQQKWTCSASPIHDSKGNIIGCIDLSGSFEDFHTHTLGIVVEASN 195 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + H S+ +G++ D L++ N +L +D Sbjct: 196 TIQEQFSVA-------EHRKWTEVAFNSIKEGILVIDNDFKLEYFNENICNILGIDKNQM 248 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILL 302 + LL IK+ + + + E T +++ ++ +++ P++ + T F++L Sbjct: 249 YKLFMKSLLKDVIKDMGDIKRLNKITYREITMYVKNRRVECNVSINPVVMNEKHTGFVIL 308 Query: 303 LHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + + +R ++ G + F ++ + + + +I R+ A++ VL+ GE G GK Sbjct: 309 VKKADTVRTMVNKIAGFSSKYDFDNILTQNARMKGIIEDARRIAKNDCTVLITGESGTGK 368 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L + +IHN S+R +GP++A+NC + E G + T + G + ELA+G Sbjct: 369 ELFAHSIHNGSKRCSGPFVAINCSALPKDLVESELFGYEKGSFTGASKEGNPGKFELANG 428 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GT+FL++I L +E+Q LL+V+ ITR+ + ++V+VIA T +L V+ F Sbjct: 429 GTIFLDEIGELPLEIQPKLLRVLDNHAITRIGGKYERDLNVRVIAATNRNLFKEVKLKNF 488 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAW 536 LY+ L+ F I + P+R RR I + L L ++ ++ ID++ + + + W Sbjct: 489 RSDLYFRLNVFNINLIPVRERREDIEMFIKFFLEKLAQKNKVKINNIDEEFMDVVKNYEW 548 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR---------LSTSLS 587 GN E+ +V++ + S+ GRI + LP ++ + + + + Sbjct: 549 LGNVREIENVVQRVYYLSEKGRITKALLPGYIMNYKKSSTEDDMKFSSDSYNEFKPEIQT 608 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 +VEK+ II A + G + S L+ +G++TL+RK+K++ ++ Sbjct: 609 LDQVEKQLIIKALRYCNGNVVNASKLINMGKSTLYRKIKKYNLEFE 654 >UniRef50_A0N0V6 Putative regulatory protein n=2 Tax=Azoarcus anaerobius RepID=A0N0V6_9RHOO Length = 661 Score = 718 bits (1854), Expect = 0.0, Method: Composition-based stats. Identities = 171/631 (27%), Positives = 274/631 (43%), Gaps = 8/631 (1%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + P +A SW RC L P A++ + ++ +E Sbjct: 24 DETVVRPEVAQSWLRCRGLGIDPRAPKLPVMLDARRLAAVREENRILIETALPFMEFLRT 83 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + L + + + +L GD L + G AE + GT A+SLA I + Sbjct: 84 AVKGTGFILVLTERSGVVLEVFGDEDILAMARDNNYVPGCSRAEEVAGTNAISLALIEKR 143 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +H+ W A P+F +G L G + L+ + L + ++ A + Sbjct: 144 PVQLTGAEHWNVRHHLWTCAAAPVFSPEGMLLGAVTLSGETTRAHRHTLGMVISAAEAIR 203 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L + E L ++L S+ + +I D G + IN A + L + A QG+ Sbjct: 204 ERLREREMAEEKRGSDVLLASVLGSISEAIIIIDAAGMVTHINPAACKSLAVTAGEIQGK 263 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ-GTSFILLLHP 305 L L Q + E + E VIT + + T IL L Sbjct: 264 PFVRLFPSQPELAQLLPVRGDNAAFEVSSERPGGRGHFVITPYVMYANEAVTGAILALRE 323 Query: 306 VEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 + + G TF + + P R I R AAR + +L+ GE G GK L Sbjct: 324 RREFLNEVREFSGFNAVFTFDDILGESPALLRQIELARTAARQNTRILILGETGTGKELF 383 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTL 420 +Q+IHN S R +GP++A+NC + E G T + G++ +LELA GGT+ Sbjct: 384 AQSIHNCSPRRSGPFVALNCAAIPRELMESEIFGYRSGAFTGARKGGQVGKLELADGGTI 443 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + ++LQS LL+ +++G ITRL R I IDV+VIA DL F + Sbjct: 444 FLDEINQMPLDLQSKLLRALQEGTITRLGDTRPIRIDVRVIAAANEDLYGKSRTGEFRQD 503 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGN 539 LYY L E+ +PPLR R I + + L +L ++ L + A+ L WPGN Sbjct: 504 LYYRLSVVELALPPLRERGDDIALIARHLLDTLGEKIDKPALSLSPPAIELLRQYPWPGN 563 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V+E A+ ++ I+ L + + + A S S ++ + I +A Sbjct: 564 VRELENVLEMGAIMAEGSIIKPGHLAYRMRDRRTPERQHAAASSRDQSIPAIQLDLIRSA 623 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + G + + LG+ R T++R+M+QHGI Sbjct: 624 IEEFNGNVDLVGRKLGLSRATVYRRMQQHGI 654 >UniRef50_C6PY17 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY17_9CLOT Length = 643 Score = 714 bits (1844), Expect = 0.0, Method: Composition-based stats. Identities = 155/630 (24%), Positives = 281/630 (44%), Gaps = 18/630 (2%) Query: 13 SPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 I S ERC + + + ++ +E ++ Sbjct: 24 KSDIELSHERCERFSIDLHQVYSRKIISEGELQRRFTDNRNLIVTAAPYMEQLINFVKGF 83 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D CIL+ GD + L Q +L G + E IGT A+S+ S ++ Sbjct: 84 NFFMLLTDGEGCILNAIGDEKILSQAFSLKMIPGAFMDEKNIGTNAMSMVIDSKGPIQVS 143 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 HF + W A P+ DS G+L G + L +E + L + +A + + +L Sbjct: 144 GRDHFIEAYHKWTCSAAPIKDSHGKLIGVLNLTGYIECVHSHTLGMVIAASNAIEEMLRV 203 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA-TASQGRAITE 250 N + + L S+ +I+ D G ++ N +A + ++ + + E Sbjct: 204 KEYNKIQNINNKHIKNLFNSIPVAIITSDMNGKIKVCNNKALDMFGSNSINKLKAYEMNE 263 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 L+ ++ AI E + + + I + I +++ E+++ Sbjct: 264 LVENWDEIRNAIYLGESFS-REVNIRTLRNNFRCNLMVSSIYNCE-EDDIEVVYVFEEVK 321 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 ++ G+ +TF + D +++ + ++ + S +L+ GE G GK + +Q+IHN Sbjct: 322 KIKRKNHGQAYYTFDKVIGQDENFIKVVEYAKKISDSKSTILIMGESGTGKEVFAQSIHN 381 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTLFLEKIE 426 S R GP+IA+NC + E G + T + G + ELA GGT+ L++I Sbjct: 382 YSSRVDGPFIALNCGAIPKQLIESELFGYEEGAFTGAKKGGNRGKFELADGGTIMLDEIG 441 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + +++Q+ LL+V+++GVIT++ + + IP+DV++IA T DL VE RF + LYY L+ Sbjct: 442 EMPLDMQTKLLRVVQEGVITKIGSSKSIPVDVRIIAATNRDLKKEVELGRFRKDLYYRLN 501 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYS 545 + +PPLR R+G IP ++ ++++ KR I ++ L + S WPGN EL + Sbjct: 502 VLPLFLPPLRERKGDIPLIIRYLIKNISKRLEKKEPSISEEWLKEINSYDWPGNIRELEN 561 Query: 546 VIENLALSSDNGRIRVSDLPE-HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 V+E I +P + ++V SL EKE ++ + Sbjct: 562 VVEL--------IINTESIPSGYFQNGNCYNEVLINISEDSLKLDFAEKEHLVKVLKKFK 613 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 G I + LGI R TL+ K+K++ I+ Q Sbjct: 614 GNITRSAEALGIRRNTLYSKIKKYNIEIKQ 643 >UniRef50_A0Q2I8 Aco operon expression regulatory protein n=24 Tax=Clostridia RepID=A0Q2I8_CLONN Length = 659 Score = 712 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 151/648 (23%), Positives = 288/648 (44%), Gaps = 39/648 (6%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + IA SW RC + + ++++ + ++ +E + Sbjct: 23 SNVRKEIADSWMRCREYNVNPMNGRGVVKDDQFTVKKIQENIELISIAKPIMKGLYEIVK 82 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 E A+ + D+ +L GD L+++ L F G E ++GT A+ A + ++ Sbjct: 83 GSEFAIILTDKDGYVLETIGDNSMLKRMKELNFVKGALWNEEVVGTNAIGTAIYLDKPIQ 142 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 T+ +H+ +W P+ + +G + G I ++ L + + A+ + L Sbjct: 143 TIGAEHYCIEQHSWTCSGAPIHNEEGEVIGCINMSGNYYNAHPHTLGIVTSAAQSIQKQL 202 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 N +N S+ +G+I ++ ++ +N +AA++L + I Sbjct: 203 AVA-------VSSNLMNITFNSISEGIIVLNKNMKIKKVNGRAAQILNSNIDKLINTDIK 255 Query: 250 EL---LTLPAVLQQAIKQAHPLKH----------------VEATFESQHQFIDAVITLKP 290 ++ + A++ K + ++ E + I ++ + P Sbjct: 256 DIVKDIDFEAIISGKYKSFNSIERNFCVKRDEIQIDDKIYKENIKNINKKVIPCILDIIP 315 Query: 291 II-ETQGTSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSS 348 + + ++ Q+ +L+ +G K +TF + + +++I ++ A + Sbjct: 316 MKVHEKVIGIVITFTETGQIHKLVNKVIGYKAKYTFDDIITQNQSMKKMIERAKKIALND 375 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN- 404 +L+ GE G GK L++Q+IHN S+R GP++A+NC + EF G + T Sbjct: 376 CNILIEGESGTGKELIAQSIHNYSKRKTGPFVAINCASIPRELVESEFFGYEKGAFTGAS 435 Query: 405 ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 + G + ELA+GGT+FL++I L +++QS LL+V+ ITR+ ++V+VI T Sbjct: 436 KEGYTGKFELANGGTIFLDEIGELPLDVQSKLLRVLDNNKITRVGGNYEKQLNVRVIGAT 495 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKI 523 L ++Q F +YY L I PL R+ I LVN + L+ + + K+ Sbjct: 496 NRKLKEEIKQKNFRADVYYRLSVMNIKTIPLNDRKDDIEILVNYFINILDMKNNRKSEKV 555 Query: 524 DDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS 583 + +L+S +W GN EL +VIE +D + +L E + E+ D ++ Sbjct: 556 SKSYIKKLLSHSWGGNVRELRNVIERDYYLND-----IDELLESVKDEKENSDKQIEKIG 610 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + S VE EAI NA + G + LL IGR+TL+RK+K++ I+ Sbjct: 611 IN-SMDMVESEAIKNALKECNGNKVKACRLLNIGRSTLYRKIKKYNIN 657 >UniRef50_C0GJ16 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GJ16_9FIRM Length = 622 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 139/634 (21%), Positives = 272/634 (42%), Gaps = 36/634 (5%) Query: 9 GRGISPLIATSWERCNKL-MKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + +SP+I SW+R + + + + ++ G+ L + + Sbjct: 15 PQEVSPVIYRSWQRSKQRELSHKRVYNDEILPAALLNERCLEHEDLVRAGKPVLPYLYRF 74 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + + + D+ IL GDP + + + + G +E + GT A+ + Sbjct: 75 LEGSNNIVMLCDDQGYILDSLGDPPFINKAQQVHLSPGANWSEAVRGTNAIGTVLVEKVP 134 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP--VEQTTAADLPLTLAIAREV 185 ++ + +H+ + A P+ ++ G + G + ++ +E+ + L A+ + Sbjct: 135 LQVLGWEHYVEQNHVLNCWAAPICNADGDVVGVLDVSGEAGIERGMERLAEVVLMGAKLI 194 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L L + + + E M DG I+ D +G + IN + A++L G Sbjct: 195 EQSLHLTELQRDFHFARQGIEKAGEMMRDGFIAIDSRGIITEINREGAKLLGRKREELVG 254 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLL 303 ++ + ++ + + + L + + QG I +L Sbjct: 255 HLAADVFDN----------RRWSFNGKSLYMQSSESDNLTSRLVKVTDEQGAPMGAIGVL 304 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P + + + T+ + +AA++S VL+ GE G GK + Sbjct: 305 SPAPREERSQETMW----------VGRSQATQSVFSRADKAAQTSSTVLIQGESGTGKEI 354 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGT 419 +++ +H +S R P++A+NC + E G T + G + E+A GGT Sbjct: 355 VARYLHQQSPRHNKPFVAINCAAIPATLIESELFGYADGAFTGAKKGGAPGKFEVAQGGT 414 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + +Q++LL+V+++ + R+ R P+DV+V+A T DL+ +EQ F Sbjct: 415 VFLDEIGDMPSNVQASLLRVLQEREVVRIGDSRPRPVDVRVVAATNRDLSTRIEQGDFRL 474 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPG 538 LYY L I +PPL R I LV ++ + + + + D+ L++ WPG Sbjct: 475 DLYYRLKVVTIDVPPLSRRLDDIYDLVPYFVKKICRASGREPMGVTDEVYEALLNYHWPG 534 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + +E++ +++ + DLP + + T + K+AI+ Sbjct: 535 NIRELENCMESMVAMAEHSYLTTDDLPAEIAKNVSAVSCGETL------LEQQTKKAIMQ 588 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 A T G+I + LLGIGRTTL+RK+++ GI + Sbjct: 589 ALAETNGKIAPAARLLGIGRTTLYRKIEELGIKS 622 >UniRef50_C8WZA1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8WZA1_DESRD Length = 631 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 168/635 (26%), Positives = 278/635 (43%), Gaps = 20/635 (3%) Query: 8 DGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + I S R + R T + + + + K L A L + ++ Sbjct: 8 DSTILRQEIQASHARSKEYGVSRTTRKNQVKLTPLELSQRQAQNKIFLEAVIAQLSELFD 67 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++P + + ++D IL G + + G E +GT A+SL Sbjct: 68 LLSPDDFMVAVVDGEGYILHMFGSDNIKAKFAERNCAPGYRWTERDVGTTAISLCLERRI 127 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 AV+ H+ Q + A P+F G L G + ++ + L + + AR V Sbjct: 128 AVQLNDKDHYCQRAHGFTSSAAPVFGHAGNLQGILVVSGNSQLVHPHTLCMISSAARSVE 187 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L +E H+ L+A+LES G++ D QG + +N + ++L T G+ Sbjct: 188 RQLRILRRNSELAMHIGLLDAVLESTTSGLMVIDSQGVIWRVNRKGGQIL--KKTDLAGQ 245 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII--ETQGTSFILLLH 304 ++ L L ++ + + E T ++ Q I + + +P++ + +L Sbjct: 246 EVSVLQGLDLDIEDIRANPNAWVNRECTLKNGRQNIHILFSAQPVLAGDQSMLGVVLEFE 305 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 P++ +R+L + G K TF M RR ++AA S VLL GE G GK L Sbjct: 306 PIDSVRKLANNIAGTKAFFTFESMIGSSESFRRAQEMAKRAAHSDSTVLLRGETGTGKEL 365 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGT 419 +QAIHN S R + P++ +NC L E G T + GR + ELAH GT Sbjct: 366 FAQAIHNASRRRSAPFVPINCGAIPGELLESELFGYVDGAFTGAQKGGRPGKFELAHRGT 425 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 + L++I + ++Q LL+V++ G + R+ AR+ +D ++IA T DL V RF Sbjct: 426 ILLDEIGDMPHDMQVKLLRVLQTGEVYRIGARKPTLVDTRIIACTHVDLGKAVAAGRFRE 485 Query: 480 QLYYALHAFEITIPPLRMR-RGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYY L+ I IP LR R R I AL L + T ++ A+ L + WPG Sbjct: 486 DLYYRLNVLPIVIPALRERGRDDILALTEFFL---SRNRVTPPQLTVGAVKALENHPWPG 542 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + I+ + I + L +A+ + + E+E+ AI Sbjct: 543 NVRELENTIQRALHLCEENEIDAACL------GVPETAAAASSSTPRGTLEEIERLAIEQ 596 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + T G + E + LGI R TL+RK+K++ ++ G Sbjct: 597 TLEDTKGNMAETAKTLGISRATLYRKVKRYSLETG 631 >UniRef50_Q0A511 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A511_ALHEH Length = 662 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 155/637 (24%), Positives = 259/637 (40%), Gaps = 19/637 (2%) Query: 9 GRGISPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G LI+ SW+RC + +G R +L + A + ++ Sbjct: 24 GDKAQRLISKSWQRCQAYGLDPRKKPKDANVLEGPQVKEERERHGELLKVANAEMHSLYQ 83 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++ +L + D IL GDP ++ + G G +E GT + A + Sbjct: 84 QVSGSGWSLLLTDNRGVILDYVGDPNLRREFRSAGLWLGADWSERHEGTNGIGTALTESR 143 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTA----ADLPLTLAIA 182 V + DQH+K + C P+ D+ G++ + + T L L A Sbjct: 144 PVAVLRDQHYKACHHALSCCGAPILDANGQVMAVLDASTVNGNQTPETQSHTLALVTLSA 203 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-DAT 241 + + + + + ++DGV++ G + + A L L D Sbjct: 204 QFISKWRFLEEFSDAIIIRFHSRCEYVGLINDGVLAVSRDGTIVGADHNACVFLGLPDRH 263 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 G I ++L + + + L + T Q + + Sbjct: 264 RLIGWPIDQVLDIRPEILVERAERPYLPYWVLTTAQGTQLHARIQLGHTAAGRRAAEQPA 323 Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 PV+ T + +DP+ R ++ + P+LL GE G GK Sbjct: 324 RPVPVQSRSASQPRDHRATLCTLEALKGNDPRMARNVNRAYRIIDKDIPILLNGETGTGK 383 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHG 417 L ++A+H S R GP++AVNC + + E G T NGR ++ AHG Sbjct: 384 ELFARAVHTASSRRDGPFVAVNCASIPEPLIESELFGYKGGAFTGADRNGRKGKILQAHG 443 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + +ELQ+ LL+V+++ I + + +DV +++ T +L LV + RF Sbjct: 444 GTLFLDEIGDMPLELQARLLRVLEEREIVPIGGDKPQAVDVYLVSATHHNLPELVAEGRF 503 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LYY L+ +T+PPLR R ++ LR R+ ID ALA L + WP Sbjct: 504 REDLYYRLNGLTLTLPPLRDR-ADCQDVIRCILR---LESDGRVDIDQAALAVLRNHPWP 559 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST----SLSFAEVEK 593 GN +L +V+ SD + V DLP+ + T T A E+ Sbjct: 560 GNIRQLRNVLRTAVALSDGETLTVEDLPDDVLDAAETAGDDQVIEGTCTGGGDPLANAER 619 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A+ A + GG + + LG+ R TL+RKM++HG+ Sbjct: 620 RALQAALEQHGGNVSRTAESLGVSRNTLYRKMRRHGL 656 >UniRef50_B0K4W6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacteraceae RepID=B0K4W6_THEPX Length = 576 Score = 689 bits (1778), Expect = 0.0, Method: Composition-based stats. Identities = 156/579 (26%), Positives = 251/579 (43%), Gaps = 9/579 (1%) Query: 61 LEDAWEYMAPRECALFILDETACILSRNGD-PQTLQQLSALGFNDGTYCAEGIIGTCALS 119 +E ++ E IL G+ +T+ F G E +GT + Sbjct: 1 MEKLLSLSGDYGFLAVLVGEDGYILETLGNHQETIDLARRTNFIPGACWREDKVGTNGIG 60 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 A + GQA+ +HF + L +W +P+F +G+ G I L+ P + L + Sbjct: 61 TAMVIGQALDVTGAEHFSRGLHSWTCTGSPIFSPEGKPIGVIDLSGPWYRENKLALATIV 120 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 + A + N L ET + LE+ D ++ D G L +N + +VL Sbjct: 121 SSAIAIENNLKQSKAFKETLTYRQLSEYFLENNSDPLLVMDNTGRLIKVNYASEKVLGWK 180 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 GR E+ + IK +K E +S+ + + PI + Sbjct: 181 KEDLIGRRADEIFDNSQEILFLIKARQSIKGKEILVQSKKGILRCSADVSPISGYYNENV 240 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 L+ F + + P R I + AA S PVL+ GE G Sbjct: 241 AALIALKMHEGSQFYISSPPALKGFEVILGNHPCLRESIRLAQIAANSDAPVLILGETGT 300 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELA 415 GK L ++AIH S R GP++A+N + E G T G+ + E A Sbjct: 301 GKDLFARAIHEASGRK-GPFVAINGGALPRELIGSELFGYVGGAFTGARPEGKPGKFEQA 359 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I + +++Q LL+V+++ + R+ + IP+DV++IA T +DL LV + Sbjct: 360 QGGTLFLDEIGDMPMDIQVYLLRVLEEKKVVRIGGHKEIPLDVRIIAATNSDLTKLVREK 419 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSC 534 +F LY+ L I + PLR R+ IP L + + ++ + ID L + Sbjct: 420 KFREDLYFRLRVLTIHLCPLRERKSDIPLLFQHFIHKFSQKLGKNITNIDPSIWPLLGNY 479 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 WPGN EL +V E ++ I VS LP +L Q + S + ST S E+EK+ Sbjct: 480 DWPGNIRELRNVAEWAVNIAEVNTISVSHLPSYLSGSQTIRENSNSFSST--SLIELEKQ 537 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 I + GG I +++ LGI R TL+RK+ ++G+ Sbjct: 538 EISQLLEHYGGNITKVAKALGIARNTLYRKLYKYGLKTR 576 >UniRef50_C4XPI1 Fis family transcriptional regulator n=2 Tax=Desulfovibrio RepID=C4XPI1_DESMR Length = 653 Score = 687 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 182/638 (28%), Positives = 280/638 (43%), Gaps = 22/638 (3%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 D P+I SW+RC + A + ++ + ++ Sbjct: 31 DEAVARPVILQSWQRCRRAGFPADTLALCPIDAAGLARSVADNRELVDTAKRVMDRLAHS 90 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGF-NDGTYCAEGIIGTCALSLAAISGQ 126 + + ++D T +L T + L+++ + G C E +GT + L + + Sbjct: 91 IHLSSSVVTLVDTTGLVLHV---SATREDLASVPYGEPGRRCDEATLGTNGMGLCLVERR 147 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V M +HF L + A P+ DS GR G + LA E L L A A + Sbjct: 148 PVHVMGAEHFSSSLHYLSCSAAPIHDSTGRFLGALNLAISTENFHQHTLGLVEAAAHAIE 207 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L +L+A +LE +DDGV G + +N QA +L L GR Sbjct: 208 EHLRLRALIASQRV-------ILELLDDGVAVLGADGTIVSLNGQACSMLGLSP-DVVGR 259 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 I + VL+ + E TF + ++ P + IL L Sbjct: 260 DIRSFVRESEVLRAILADRQTFHDREVTFRLVQGELSCALSCAPFADG---GVILTLRET 316 Query: 307 EQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 +MR+ G K +TF H+ R + R AA+ LL GE G GK L + Sbjct: 317 RRMRKYAARVAGAKAVYTFEHILGQSKALREAVRLARVAAQGDATTLLLGESGTGKELFA 376 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLF 421 QA+HN R GP++ VNC + E G + + G + ELA GGTLF Sbjct: 377 QAVHNAGARRKGPFVVVNCGALPRNLVQSELFGYVAGAFSGALKEGSPGKFELADGGTLF 436 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +E Q +LL+++++ +TRL + +DV++IA T DLA+ V N F L Sbjct: 437 LDEIGEMPLEAQVSLLRLLQENEVTRLGGKEARRVDVRIIAATNKDLALAVRNNAFRGDL 496 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGND 540 YY L+ I IPPLR R G +P L L L+I +ALA L + WPGN Sbjct: 497 YYRLNVLSIAIPPLRQREGDVPLLTRLFLDKFTASLGKPELEISREALAALAAHHWPGNV 556 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL + IE L + + RI ++DLP+ + T+ +A +S +++ I+ Sbjct: 557 RELENCIERLVNVACSSRIDIADLPQDVMTDMLRGRPAAPG-EAGMSLKRIQRALILETL 615 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 + TGG + S LL I RTTL+ K+KQ+GI A F+ + Sbjct: 616 RETGGNFRRASNLLNISRTTLYAKLKQYGISADTFRDQ 653 >UniRef50_B7DTW4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DTW4_9BACL Length = 668 Score = 686 bits (1771), Expect = 0.0, Method: Composition-based stats. Identities = 153/637 (24%), Positives = 272/637 (42%), Gaps = 25/637 (3%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 G+ + SW+R + ++ V + ++ + L+ +E + Sbjct: 35 PGLRGSVLESWKRSKSYGVQPEQLQARLSKPVDEVLEWAKESDFFQIAIPVLDHVYEKIQ 94 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + L + D CI+ G+P+ + + + F G +E GT A+ A + ++ Sbjct: 95 HTKHLLTLTDSHGCIVYLRGEPRVIDKAHLMQFTLGADWSEESAGTNAIGTAIYLQKPIQ 154 Query: 130 TMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 + +H+ Q +W A P+ D G L G I P E L + IA + Sbjct: 155 IFSYEHYAQGAHDWVCSAAPVHDPCTGELLGIIDFTAPHEYAQPHTLEMARIIALNLQTE 214 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 SL + + + ++ +D + +A L G Sbjct: 215 YSRISLDTKNYLYEEYAKVRNRWPGEALLLFDRTLRIIAETPEARNFLCNLQHQFPG--- 271 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 + AV++ A+ + H + +++ + ++ + Q I+LL Q Sbjct: 272 ---CSPRAVIRDALLACGGVTHTIELLDPKYK----LTSMPVLRNGQQVGCIILLARDSQ 324 Query: 309 MRQ----LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 R +T V+H + + +R I + A ++ PVL+ GE G GK L Sbjct: 325 SRHTRGHRVTDNAINVNHPWRTIIGSSRVIQRAIQRAQIVAATNAPVLITGESGTGKELF 384 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTL 420 ++AIH S R P++AVN +A E G + T G+ + E A+GGTL Sbjct: 385 ARAIHEASPRGKQPFVAVNIAALPRELIASELFGYEPGAFTGAHPRGKKGKFEEANGGTL 444 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + +ELQ LL+V+++ ITRL + +DV++IA T +LA V F Sbjct: 445 FLDEIGDMPLELQVYLLRVLQEKKITRLGSTTSEAVDVRIIAATNQNLAQRVANGEFRLD 504 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGN 539 L+Y L+ EI +PPLR R +P++ + L ++ + + D + L WPGN Sbjct: 505 LFYRLNVVEIELPPLRDRLADVPSIAQHFLSLFAQKHDKSVERFDPEVLNLFKQYHWPGN 564 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTE-----QATDDVSATRLSTSLSFAEVEKE 594 EL +VIE + S+ I V+DLP++L + +D + S + E+ Sbjct: 565 VRELQNVIEYSVIFSETDSITVNDLPDYLTRSIFKNLEVSDKPIYDTIEMSDAIENEERR 624 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 I + T G I +++ L RTT++RK+K +G++ Sbjct: 625 LIAYWLEKTNGNISQVARQLRRSRTTIYRKIKHYGLN 661 >UniRef50_B8FQM8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FQM8_DESHD Length = 694 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 166/662 (25%), Positives = 296/662 (44%), Gaps = 43/662 (6%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALED 63 + IS +A SW R ++ A + + ++ + + +E Sbjct: 42 DPRECDDISNEVAESWLRSRDRGIDPYNSMSKPYPNSREHAEKIVKNRPLIEITKPLMEK 101 Query: 64 AWEY-MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 + + P L++ D T L + GD + +G E IGTCA ++ Sbjct: 102 FRDMAVLPSGFILYLCDYTGAFLLQAGDMVRVP-------TEGVAWNESTIGTCAHTICM 154 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVE---------QTTAA 173 + ++ + +H+ L N A P+ D G++ +I L P+E + Sbjct: 155 ELKKPIQILGPEHYCVGLHNIVGSAAPIMDESGKVIASIILGQPIEYRLEGEYFNNFLSH 214 Query: 174 DLPLTLAIAREVGNLLLTDS--------------LLAETNRHLNQLNALLESMDDGVISW 219 L L A+A+ + L + ++ E N ++ L LE MD+G+I+ Sbjct: 215 TLGLITALAKAIETQLKLNQTNELLTESNSNLIKVIHELNTTMDTLETTLEVMDEGIITL 274 Query: 220 DEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQH 279 D G + +N + R+ ++ + I E L + + I + +E + Sbjct: 275 DPSGRIINMNREVTRIFKIRPEEKSHKNINEFLHTHSQVAALITAGKSVD-IEENLVIGN 333 Query: 280 QFIDAVITLKPIIET---QGTSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTR 335 +I ++P++ Q + +L L+ V+++ ++ G +++F + + + + Sbjct: 334 DEQPYIINIRPVLNKKTQQIEAAVLRLNHVDKVNAQAANRTGSIATYSFECIVGESEEIK 393 Query: 336 RLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEE 395 + + R+ A SS VLL GE G GK L +QAIHN S GP++AVNC + E Sbjct: 394 KAVSIARRFATSSENVLLMGESGTGKELFAQAIHNHSC-PLGPFMAVNCAAMPRELIESE 452 Query: 396 FIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDAR 451 G + T GR ++ELAHGGTLFL++I + +ELQ+ LL+ ++ I R+ R Sbjct: 453 LFGYEGGSFTGAERTGRPGKIELAHGGTLFLDEIGDMPLELQAVLLRALEDKQIMRIGGR 512 Query: 452 RLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR 511 R +D ++IA T +L +V++ ++ LY+ L ITIP LR R+ I L ++ Sbjct: 513 RYKKVDFRLIAATNKNLFKMVKERQYREDLYFRLSVLTITIPSLRNRKNDIDVLSQYFIK 572 Query: 512 SLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 + ++ KI AL ++ WPGN +L + + S+ N I LP+++ Sbjct: 573 NYCQKQGWKTPKITKGALRKIQEYEWPGNVRQLQNALIYAVNSAHNDVIDTDSLPQYILL 632 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + + SLS +EK AI A I + + LLGI R+TL+RK+K +G Sbjct: 633 DSSPFQDEPNFTTDSLSLEHLEKNAIKTALLHAKNSIPDAAKLLGISRSTLYRKLKDYGF 692 Query: 631 DA 632 + Sbjct: 693 EY 694 >UniRef50_B8FV05 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FV05_DESHD Length = 687 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 172/647 (26%), Positives = 305/647 (47%), Gaps = 22/647 (3%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALED 63 I +A SW + F + +K ++ + + Sbjct: 45 DPRLDPIIPREVAESWIVAKNQHLDPYVKSFEVLLEANKFEKVIAKKADLVETASNYIHN 104 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 E + + + DE +L G + ++ + L + E IIGT A +L Sbjct: 105 FHEILNYSNFIMVLTDENGVVLLIEGSKKEIEAFNKLNIRLSSLLNEKIIGTSAHTLCIR 164 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC-----PVEQTTAADLPLT 178 + ++ + ++ +L + ATP+F+ G + GT+ + ++ A L Sbjct: 165 HRKPIQFIGPYNYSMILQDNISSATPIFNDHGSVIGTLVVVQMLARKDMQNIQAHSLGWV 224 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +A+ + NLL L A L +DDGVI+ +E + IN + +L Sbjct: 225 MAMGYAIENLLELKKQNNSMTLMNGTLEATLSLIDDGVITVNENCYISHINKEGINILAS 284 Query: 239 DATA-SQGRAITELLTLPA--VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ 295 + GR ++E + ++ ++I + ++ E F ++ + ++ ++PI + Q Sbjct: 285 NPQEKIIGRHLSEFVKDDQLIIINESIHKGRFVQEYETIFMNRGRDTQYLLNIRPIADGQ 344 Query: 296 GT---SFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 G ++ L +++ +++ ++ G S F + + I + AR+ + V Sbjct: 345 GKYNSGAVIRLSRSDKVNRMVANRGGTPASFKFEDIKGKSTSLAKSIQIAQNVARTGYNV 404 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENG 407 LL GE G GK L +Q+IHN S +A GP++AVNC + E G + T NG Sbjct: 405 LLIGESGTGKELFAQSIHN-SYKADGPFVAVNCASLPRNLIESELFGYEGGTFTGADRNG 463 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ++ELA+GGTLFL++I + +E+Q LL+V+++ +TRL R IP+D +VIA T + Sbjct: 464 RPGKIELANGGTLFLDEIGDMPLEIQPVLLRVLEEKRVTRLGGSRGIPVDFRVIAATNKN 523 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDD 526 L+++V++ F LY+ L F+ITIPPLR R + L + + K+ + + K+ Sbjct: 524 LSLMVKEKTFREDLYFRLSIFKITIPPLRERDHDVILLAEYFIEDISKKLMSEVPKLSPA 583 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 + ++ +WPGN +L + + S NG I +S+LP+ + + TR L Sbjct: 584 SYQKIKEYSWPGNIRQLQNAMVYGVNMSTNGVIELSNLPDEMTSNDYFRTKVNTR---KL 640 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + AE+EKE I A TG E S +LGIGRTT++RK+K++GID Sbjct: 641 TLAEIEKEVIFEALSQTGNDASEASRILGIGRTTIYRKLKEYGIDIK 687 >UniRef50_A7NKW0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Roseiflexus castenholzii DSM 13941 RepID=A7NKW0_ROSCS Length = 674 Score = 682 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 208/641 (32%), Positives = 325/641 (50%), Gaps = 14/641 (2%) Query: 10 RGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + P+IA SW+RC T A + ++ L + +ED ++++ Sbjct: 28 PALDPIIAMSWQRCILRCNPYTVADLPGISEAELADRRAKLADLIALARPIMEDIYQFVE 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + +LD +AC+L GD +Q ++LG G Y EG GT A LA V Sbjct: 88 GSGMIIVLLDASACVLDVLGDANVQRQAASLGLRPGAYWNEGCAGTNAFGLALYERCPVH 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 + +HF Q + A P++ +GR G + +AC A L A AR + + L Sbjct: 148 VIGAEHFFQRFHGLSVSAAPIYHWEGRPIGVLGMACLTSAGNGATLATVHAAARAIEHQL 207 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + L E N L+A++E++ DG I D+ G + IN AA++L + A+ GRA+ Sbjct: 208 HAEKLFNELNTQRTLLSAIVEAISDGFIVCDQAGLVVHINLCAAQILGVKREAAVGRALG 267 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-----IETQGTSFILLLH 304 + LP V+ +A++Q L E +F+ Q I +I+L PI FIL L Sbjct: 268 ASVELPPVVAEAMRQCVMLTDAEVSFQVQKVQIRCLISLIPIQWQLDRVNNVEGFILTLR 327 Query: 305 PVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 +EQ+ +++ +G + + TFA + + + AARSS PVL+ GE G GK + Sbjct: 328 RLEQVHRMVQRMVGARSNFTFASIIGSSHAINQARRQAQAAARSSVPVLIVGESGTGKGV 387 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDN-----ENGRLSRLELAHGG 418 L++ IHNES RA GP++ VNC + + EF+G + G+ + ELAHGG Sbjct: 388 LARVIHNESARAEGPFVTVNCRVLPRDLIVGEFLGYEI-GAFHSNRLQGQPGKFELAHGG 446 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TL LE+IE L +++Q+ALL+V++ G + RL R+I ++V++I TT+ +L LV + F Sbjct: 447 TLHLEEIEALPLDMQTALLRVVETGEVVRLGGHRVICVNVRLIVTTSLNLERLVLRGDFR 506 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYYA+ I + PLR R +P LV + L + ++ + I DA + +WPG Sbjct: 507 ADLYYAVSRMTIRLAPLRERTADLPLLVRDILERMHRQTGRAVSISYDAQQLMRCYSWPG 566 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL +V+E A +DNG I V LP+ + + + + + E E EAI+ Sbjct: 567 NVRELENVLERAASLADNGMIDVWHLPDAIRGRPSETEPGYDQH--VPALHEAEYEAIVR 624 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV 639 AA+ G M+ +LGIGRTTLWRK+K + FK + Sbjct: 625 AARACQGNATRMAQMLGIGRTTLWRKLKAANVSLDDFKPSL 665 >UniRef50_Q24ZH2 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24ZH2_DESHY Length = 659 Score = 682 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 154/648 (23%), Positives = 292/648 (45%), Gaps = 28/648 (4%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAALE 62 + +A SW R + HQ + RK+ ++ ++ Sbjct: 21 EDPRKSPYVPIEVAESWIRSKNYGVDPYKSVQAHQLSPKEKIVLAERKEMLIQTAVPLMK 80 Query: 63 DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 ++ + + DE IL GD + + + GT +E + GT A +L A Sbjct: 81 KYLSLLSASGYTMLLTDERGVILFIEGDKEKVPEEE-----FGTIVSEDVTGTNAHTLCA 135 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIAL-----ACPVEQTTAADLPL 177 I + V+ + ++ L +TP+FD G L GT+ + + A L Sbjct: 136 ILRKPVQFIGPYNYCIHLDENIVSSTPIFDQYGDLIGTLTIYQLFAEKDIYNMQAHSLGW 195 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 ++A + N L E + L A L ++ G+I+ D++G IN + R+L Sbjct: 196 ITSMAYAIENQLKLKQANEELSLSNGTLEATLAVVEGGLITLDKRGMTAHINNEGCRILG 255 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI------ 291 + + G T+ L + +K + + E ++ V+++ PI Sbjct: 256 ITQEETLGEHFTKYLQNDKITG-ILKDGKAVSNHEIIIDNGETEKQYVMSIYPIVPQDTC 314 Query: 292 -IETQGTSFILLLHPVEQMRQLMTS-QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 I + ++ L +E +++L+ + +++F + DP +++ RQ ++ Sbjct: 315 NINDKLNGIVIHLSRIENIKKLVNDWRGASATYSFEDIQGKDPLFLKIVGIARQYSKLYA 374 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-E 405 VL+ GE G GK L +QAIHN S GP+I++NC + E G + T Sbjct: 375 NVLIHGESGTGKELFAQAIHNASC-PEGPFISINCSAMPRNLIESELFGYEGGAFTGAER 433 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 GR +ELA+ GTLFL++I + +E+Q LL+V+++ + R+ ++ IP+ +VI+ + Sbjct: 434 KGRPGLIELANEGTLFLDEIGDMPLEIQPVLLRVLEEKKVMRVGGKKYIPVSFRVISASN 493 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-ID 524 +L ++V++ F LYY L F++ IPPLR R I +L ++ ++ ++ + Sbjct: 494 KNLNIMVQEKTFREDLYYRLAVFKLQIPPLRKRPDDIISLAQFFIKGTSQKVGRKMPVLS 553 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 A + AWPGN +L + + + I DLP+ + ++ + S+ Sbjct: 554 KAAQKVIKEYAWPGNVRQLENSMVYAVSLTQGDVIGAEDLPDDITNPITPEN--SRLFSS 611 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 +S E+E AI NA + T I + +LG+G++TL++K+K++ ++ Sbjct: 612 VMSLREMEITAIKNALEQTNQNIANAANILGLGKSTLYKKLKEYHLEY 659 >UniRef50_A5G7C5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfuromonadales RepID=A5G7C5_GEOUR Length = 660 Score = 682 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 139/636 (21%), Positives = 246/636 (38%), Gaps = 22/636 (3%) Query: 12 ISPLIATSWERCNKLMKR--ETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 +S I SW R + + + + +L +E+ +E + Sbjct: 30 VSDSIMRSWRRSIDNGVDMERENSNIPTITSKELEGLTEKNRNLLVQSFPVMENLYEQIQ 89 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + D T +L GD + + + G +E GT A+ A + V Sbjct: 90 DTSSMVILADATGVVLHSLGDTDFVDRARKVSLQPGGIWSEQFRGTNAIGTAIVEQLPVL 149 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 + +H+ A P+FD G+L G + ++ + L +++ N + Sbjct: 150 VHSSEHYVTSNDFLTCSAAPIFDPYGKLLGVLDVSGDCRAYQQHTMALVRISVQQIENQM 209 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + ++ + + +M + + + G L N A L LD +Q T Sbjct: 210 FSIGFDSDIILQFHSRPEFIGTMYEAIAVFGRDGRLLAANRSALLHLGLDRYRAQTVTFT 269 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L L A A P ++ + + P + S Sbjct: 270 HLFDLSLDSLLAHAGATPQPVLQLPLYGGMKVFGR-ARVSPARSAKVISHKGSPGASTPA 328 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 R+ S+ ++ + D + R I R+ A PVL+ GE G GK L ++A+H Sbjct: 329 RKPGLSERRLLA--LDALEFGDTRMRSAIDKARRVAGHDIPVLIEGESGTGKELFARAMH 386 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKI 425 R P++A+NC + + E G T + G + ++ A GGTLFL++I Sbjct: 387 LSGGRRNAPFVALNCAAIPENLIESELFGYQEGAFTGAKRNGSMGKIRQADGGTLFLDEI 446 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ+ LL+V+++ +T L PID+ V+ T L + RF LYY L Sbjct: 447 GDMPLALQARLLRVLQERTVTPLGGAGSHPIDISVVCATNRKLRDEIAAGRFREDLYYRL 506 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + IT+P LR R + L + L + +++ DD L S WPGN ++++ Sbjct: 507 NGLLITLPTLRER-EDLRPLAQSILNEITG-LGRVIRLRDDVLDIFASHPWPGNVRQMHN 564 Query: 546 VIENLALSS-DNGRIRVSDLPEHLFTEQATDD----------VSATRLSTSLSFAEVEKE 594 V+ ++ I V L + + + T + + S +E + Sbjct: 565 VLRTAVALLGEDDEISVVHLSDDFLEQYREAAPLHIESKNYLPATTVQAGTASLDHLEAQ 624 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 AI A + G I + LGI R TL+RKM+ G+ Sbjct: 625 AIRQAVRECNGNISAAARRLGISRNTLYRKMRSIGL 660 >UniRef50_Q24N84 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q24N84_DESHY Length = 650 Score = 681 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 165/649 (25%), Positives = 299/649 (46%), Gaps = 37/649 (5%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 + + + P I SW R ++ ++ P Q + F + ++K ++ + Sbjct: 17 DPSAVKEVRPEIVESWIRSSENGLDPRHYDYPPQMDPLMFEQLLKKKALLIQASTPFIHH 76 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFND--GTYCAEGIIGTCALSLA 121 ++ EC + I DE ILS ++ L GF GT E IGTC+ + Sbjct: 77 LENMLSHVECYIIISDEQGVILSV------VKALGGNGFKLEAGTIWTEKTIGTCSHGMC 130 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPV-EQTTAADLPLTLA 180 + ++ +HF + N A + P+FD G L GT+ + P + L L ++ Sbjct: 131 ILLKSPIQLCGPEHFSHIFENIACSSAPIFDENGNLEGTLTITSPNLRSHNSQTLGLAIS 190 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 +A + +A LE+ ++ ++ D+ G + N A +++ L Sbjct: 191 MAMGIQKQFQIA-------LQNEIFDAALENTEEIMLFSDDDGKIIRTNMNALKIIELFG 243 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSF 299 G + ++L + + + L H++ + + + + ++KPI + + + + Sbjct: 244 RDLIGSQVEDVLGEQPFFKSVAETGNTLSHIDFQLKYTKKKL-FLTSIKPIKSKDKISGY 302 Query: 300 ILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 I+LL + +++ S V TF + PQ+ +L ++ A + +L+ GE G Sbjct: 303 IVLLKETDHIKKAAKSPYAAMVKFTFDTIIGSSPQSMKLKSMAKKFAHFNSNILIQGESG 362 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLEL 414 GK + +QAIH E R GPYIAVNC +A E G + T G+ ++EL Sbjct: 363 TGKDVYAQAIHFE-NRPNGPYIAVNCAAIPQNLIASELFGYEGGAFTGAERQGKPGKIEL 421 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A+GGTLFL++I + +ELQ+ LL+V++ +I + R IP+D ++I T +L LV+ Sbjct: 422 ANGGTLFLDEIGDMPLELQAVLLRVLEDKMIMHVGGSRYIPVDFRLITATNKNLLDLVKN 481 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVS 533 N+F LYY + F++++PPLR R I L+ + +R + + A L+ Sbjct: 482 NQFREDLYYRISVFKLSVPPLRERGSDIVQLIEHFIRIYSSNQGIDEPILSNSAKYLLLQ 541 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF-----------TEQATDDVSATRL 582 WPGN +L + I S+ G IR +LPE + + + L Sbjct: 542 YNWPGNVRQLQNTISYAVCMSNEGIIRPENLPEEILSYQPPSGLTLAQPEPEPSPNEIIL 601 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + S E+EK+AI+ A + I+ + +LG+ ++TL+RK+K++ I Sbjct: 602 DNTPSMKEIEKKAIMKALHESNNHIRGAAKILGLSKSTLYRKIKEYEIS 650 >UniRef50_B8FQL8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FQL8_DESHD Length = 697 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 159/660 (24%), Positives = 283/660 (42%), Gaps = 34/660 (5%) Query: 3 GAFNNDGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 G + IA SW R E+ SI+ + K ++ + L Sbjct: 40 GTDPRLSPYVRDEIANSWIRSQSYNLTPESMGTAPTISSRELNSIFEQNKELIDIAFPLL 99 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + + + ++D + +L RNG+ + + + G E IGTCA L+ Sbjct: 100 DSFKPLLTESGYMVSLVDGSGIVLYRNGNTKMVDRYGNT-IGPGVLWNEATIGTCAHVLS 158 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC---------PVEQTTA 172 + + + ++F N PLFDS G++ + L + Sbjct: 159 IRHKKPISLLGPENFPAYFQNDITSTAPLFDSDGKVIAVLILLQKLGDDPWDLDLHNLQY 218 Query: 173 ADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 L ++A E+ L + L ++ M +G++ +G +Q IN+ A Sbjct: 219 LTLGWVTSLAMEIKTQLNLKLSNSLFKSTNTALQTAIKMMTEGMVIVSREGLIQHINSPA 278 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 A++ + + GR I E L L +A++Q + ++E + + +++P+ Sbjct: 279 AQIFNCNTNEAIGRNIMEFLVKNDALAEALRQLKMIHNIEVEVLNDYGTQGYTFSIQPLP 338 Query: 293 ETQG--TSFILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 + ++ + E+ + +++S G K+ F + + R ++ ARS Sbjct: 339 ADSSGSSGGVVKIVDTEKAKNMVSSSSGAKLDFDFQSIKGASTKMLRTKSLAQRFARSPA 398 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN 406 +LL GE G GK L +QAIHNE R +GP+I +NC + E G T + Sbjct: 399 NILLIGESGTGKELFAQAIHNE-YRPSGPFIVLNCAAIPKNLIESELFGYDSGAFTGAKK 457 Query: 407 -GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G ++ELA GGTLFL++I + +E+Q+ LL+V++ + R+ + +D +++A T Sbjct: 458 NGSPGKIELAEGGTLFLDEIGDMPIEIQAVLLRVLENKQVMRIGGSKYRAVDFRMVAATN 517 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 DLA LV+ +F + LYY L + IPPLR R + +L ++ R S K+ Sbjct: 518 KDLATLVQSGQFRQDLYYRLSVLRVDIPPLRQRDSDVLSLAEFFIQKYNWR-SKLPKLSH 576 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV-------- 577 + +L+ WPGN +L + I S++ I LP+ + + Sbjct: 577 ETKIKLMEYTWPGNVRQLENAIIYALNVSEDELILPEHLPDEIIHNKNHPASLSLNPIEL 636 Query: 578 ------SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + L +S E EK + NA +G I + LLG+ ++TL+RK+K GID Sbjct: 637 SKENNLNEAELRDVVSLKEAEKIVVQNALAKSGNNICIAAELLGLSKSTLYRKLKLLGID 696 >UniRef50_C0QHF5 Signal-transduction and transcriptional-control protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHF5_DESAH Length = 684 Score = 676 bits (1746), Expect = 0.0, Method: Composition-based stats. Identities = 153/631 (24%), Positives = 265/631 (41%), Gaps = 14/631 (2%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPH-QAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I I SW+RC+ L + A R ++T Q + + Sbjct: 59 DLSCIKKPIRDSWQRCHNLGVDPAFGKCQDICDIKKLAPETRLLCDLVTEAQPHINNL-- 116 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + R + I + +++ GD + L L F G +E +GT A+ A SG Sbjct: 117 -IRKRGLIVTISNPQGYLINMFGDYRALICAEKLNFGPGANWSEASVGTNAIGTALASGV 175 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 A+ +HF + +W A P+FD G + G I ++ P LPL + AR + Sbjct: 176 ALTVSGLEHFCEGHQSWICSAAPIFDLSGTMIGCIDISGPTTSIHNIPLPLAINGARIIE 235 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + LL + +N + + ++ G++ D G ++ +N AA +L + + G Sbjct: 236 SQLLKKQANELKQQSVNLVTSAFNAVATGMMVLDPNGIIKTVNPTAAVLLNMSQESLIGC 295 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF--ILLLH 304 + + L++ +K++ + Q A + PI G+ +L+L+ Sbjct: 296 SAQICFEIETALER-LKKSPEIHATMGVTVKWKQRASANARVYPITTPNGSLGCLLLVLY 354 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 + + K F + + +Q A +L+ GE G GK ++ Sbjct: 355 ESQNRPHMALPMETKTHDPFNAVIGVSSAILSAVETAKQVAPQMTSILITGESGTGKEIM 414 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTL 420 ++A+H S RA P++A+NC + E G T G + E A+ GTL Sbjct: 415 AKALHRASPRAQKPFVAINCGAIPHELIQSELFGYAQGAFTGANRGGNPGKFEQANEGTL 474 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + ++LQ LL+V+++ +TR+ IP+DV++++ T+ +L L+ Q F Sbjct: 475 FLDEIAEMPLDLQVNLLRVLEENSVTRVGGNHPIPVDVRILSATSKNLKELILQKTFRED 534 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGN 539 LYY L +I +PPLR R + L + + L K + + ++D L + WPGN Sbjct: 535 LYYRLKVVKIDLPPLRQRGRDMDLLAEHFINQLSKELNQTVKRVDPSFYRSLHNHTWPGN 594 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL IE + L + + + L+ VEKE I A Sbjct: 595 VRELKHAIEGAIALMSGDTLFGDALCDS--PGNLQETALSVPDKERLNLMRVEKETIQLA 652 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 G I + LGIGR TL+ K+ ++ I Sbjct: 653 YARFSGNISHTAKALGIGRNTLYAKLLKYKI 683 >UniRef50_C1DNV1 Sigma54-dependent activator protein n=8 Tax=Gammaproteobacteria RepID=C1DNV1_AZOVD Length = 667 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 162/639 (25%), Positives = 267/639 (41%), Gaps = 31/639 (4%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G+ P+I SW RC + A + + ++ ++ Sbjct: 47 ERPAGVRPVIWDSWRRCVRAGLEPDGFEYRFVDAAVLAEKLKSNRLLIETAAEVMQGLLA 106 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFND-GTYCAEGIIGTCALSLAAISG 125 Y PR + + D L G L G+ E + GT LA Sbjct: 107 Y-NPRGH-INLTDAEGVTLHFCG----------LDITPVGSVLLESLQGTNCTGLAIAEN 154 Query: 126 QAVKTMADQHFKQVLW--NWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + V +++++F L A P+ D GR + L + L A A Sbjct: 155 RLVYVLSEENFGTWLRQRRMHCAAAPIRDLGGRTLAILTLTAEPGRFHFHTLGTVQAAAE 214 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 V + +LL E LLE +++G++ DE+G ++ +N A ++ R++ Sbjct: 215 AVSRQMALQALLEEQR-------TLLEVLNEGLVVLDERGCIKALNRYARQLFRVER-DL 266 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGTSFILL 302 G L V ++ L ++ T + + + ++ P +G + L Sbjct: 267 LGAPFHRLGRGERVDSLLLRADEGLHDLDITLQLHDGTHLSCLASVCP--TERGGRIVSL 324 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + S+TF + + + R A+R L+ GE G GK Sbjct: 325 RENRRIREITRRIIGTQASYTFETILGGSRAMQDTLRLARIASRGDSTTLILGESGTGKE 384 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NENGRLSRLELAHGG 418 L +QAIHN SER GP++AVNC + E G T G + ELA GG Sbjct: 385 LFAQAIHNASERCGGPFVAVNCGAIPRDLVQSELFGYIEGAFTGSARGGSAGKFELADGG 444 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 T+FL++I + + Q++LL+V+++G +TR+ A+R P+DV+++A T +L+ V F Sbjct: 445 TIFLDEIGDMPFDAQASLLRVLQEGEVTRVGAKRSQPVDVRIVAATNRNLSRAVADGSFR 504 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWP 537 LYY L+ +++PPLRMRR IP L + L + ++ I +AL L++ AWP Sbjct: 505 EDLYYRLNVLSLSVPPLRMRREDIPTLAQHFLERCARSLRKPVRGIVREALDILMAHAWP 564 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL + IE A + I DLP L A R ++ E AI Sbjct: 565 GNVRELENTIERAANLAGGELIEAEDLPLELAQVARRAAEPAVRCGAAMDLGSHEMNAIA 624 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 A + G ++ + LG+ R L+ KM ++G+ A F+ Sbjct: 625 AALRECRGNVRLAAKRLGVSRGGLYNKMNRYGLSADAFR 663 >UniRef50_Q5WE88 Transcriptional activator of the acetoin dehydrogenase operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WE88_BACSK Length = 647 Score = 672 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 149/632 (23%), Positives = 270/632 (42%), Gaps = 31/632 (4%) Query: 10 RGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + IA SWE L + T A + K +L+ ++ + Sbjct: 35 SELRSEIAHSWETSKDLGVNPFQSQINEIINDQTLAIRLKHNKQLLSYASPRIQQLLDLF 94 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + L I D+ IL G+ L++ G E GT A+ + + Q+ Sbjct: 95 DDSKTVLSIADKDGTILKSVGEKNVLKRAEKRYIFAGGTWTEKSAGTNAVGMVLRTKQSS 154 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSK-GRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + + +HF + + +W A P+ L G + LA + LA A+ + Sbjct: 155 QVLFSEHFCENVHDWYCVAFPVLAPFTKELLGIVNLAGNASDVHRHSIGYALAEAKNMAL 214 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L HL L+ LE MD V+S D + N A R R + Sbjct: 215 SLERHFFEYALRHHL-FLHTALEKMDHIVLSVDLSDQILTRNEGANRSERFQNET----S 269 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPV 306 I L A++ + + + + +++ P+ + ++ L Sbjct: 270 IASFPELKALVANVRTNGQQIVNEQ--IQDGSTNKRYQVSIYPVRFQDHIYGVVIFLQQD 327 Query: 307 EQMRQLMTSQLGKV--SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 +++ K ++F++M P + L+ +AA +L+ GE G GK +L Sbjct: 328 QRVVNKKKPSPRKATTRYSFSNMVGVSPTFQALLKQAEKAASLQSTILISGETGTGKEVL 387 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTL 420 +QAIH S R P++A+NC + L E G + T ++ G + E A+GGT+ Sbjct: 388 AQAIHQASNRGGKPFVAINCGAVPPSLLESELSGYEAGAFTGSKAKGSAGKFEQANGGTI 447 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + ++LQ LL+++++ V+TR+ IP+DV+VI+ T DL V++ F Sbjct: 448 FLDEIGDMPLDLQVHLLRILEERVVTRIGGSVPIPVDVRVISATNKDLKEAVQKGTFRED 507 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGN 539 LYY L ++ +PPLR R IP L+ + L +L + F + + + + L L WPGN Sbjct: 508 LYYRLCVLQMELPPLRERSEDIPVLIQSFLPALCQEFGKQMISLTRETLTILERYHWPGN 567 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL +V++ D I LP+ +++ + E EK+ ++ A Sbjct: 568 IRELKNVLQQAMFVMDGDVIHPHHLPDSFYSQTQS--------------DEYEKQKLLRA 613 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + + +A L + R T++R++K++ ++ Sbjct: 614 LEQQEGNVTKAAASLNMSRATIYRRLKKYRLE 645 >UniRef50_A1K9P3 Sigma-54 dependent transcriptional regulator n=2 Tax=Rhodocyclaceae RepID=A1K9P3_AZOSB Length = 674 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 140/642 (21%), Positives = 249/642 (38%), Gaps = 28/642 (4%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQG-VTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 + SW+RC V G A + R + +LT +E +E + Sbjct: 35 AEVLRSWQRCRDGGVSAQSTVAGDPAGRSRLAEVRERSEHLLTQAAGIMEHVFEQIRASG 94 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D IL GDP + + + G E GT A+ +A I + + + Sbjct: 95 SMVLLADVDGVILHSLGDPDFIARAQRVALQPGASWDEAARGTNAVGIALIEQRPAEVLG 154 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 +HF + A P+F G L G + ++ + L A+ + L Sbjct: 155 AEHFLERNGILTCSAAPVFKPCGMLAGVLDISGDYRSNQRHTMGLVRLAAQLLEKRLFEV 214 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 + ++ + S+ +G+++ G + N A L + G A + + Sbjct: 215 DFARQVLIAVHARPECVGSLQEGLLAVSADGCIVGANPAAREALGITDIGPGGLAFSSVF 274 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 + + + P + + + P V + Sbjct: 275 RVSLDVFFDRSRRDPASLQMLEARRGERIYTRLKSSLPPRTEPVGGSAPARPAVTAKAET 334 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + T A + D + + + + P+L+ GE GVGK L ++A H Sbjct: 335 SEAVPRDGRVTLACLATGDSRLQLALDRAGKVIGKDIPLLIQGESGVGKELFARAFHFSG 394 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEYL 428 R GP++A+NC + + E G T G + +++ AHGGTLFL++I + Sbjct: 395 PRRDGPFVALNCAAIPENLIESELFGYVGGAFTGARREGAVGKIQQAHGGTLFLDEIGDM 454 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + +Q+ LL+V+++ +T + + R +P+D+ ++ T L V++ F LYY ++ Sbjct: 455 PLGMQARLLRVLQERSVTPIGSVRQVPVDISLVCATHRLLRESVQKGSFREDLYYRVNGL 514 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 +T+PPLR R G I +V+N L + +++I + + WPGN +L +VI Sbjct: 515 TVTLPPLRER-GDIGRIVSNILAAEAGD-GRQIRIGAEVMDFFERYPWPGNVRQLQNVIR 572 Query: 549 NLALSSDN--GRIRVSDLPEHLFTEQATDDVSATRLST-------------------SLS 587 D+ IR LPE LF + R S Sbjct: 573 VAVALLDDDEDEIRPLHLPEELFGADTMTEGDRHRPDERPSSVVTPLGQPAAGIATGGRS 632 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+E EAI + GG + + LGI R TL+RK+ + G Sbjct: 633 LDEIELEAIAVVMREVGGNVSAAARRLGISRNTLYRKIGRIG 674 >UniRef50_B8FTG8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FTG8_DESHD Length = 680 Score = 670 bits (1730), Expect = 0.0, Method: Composition-based stats. Identities = 159/663 (23%), Positives = 282/663 (42%), Gaps = 43/663 (6%) Query: 3 GAFNNDGRGISPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 G + +A SW R T + + + + + ++ + Q + Sbjct: 28 GEDPLLNPYLRKEVAESWIRSKNNGVFPWTSYSKYYLTEEEWGVLKEQNERLIHIAQPLI 87 Query: 62 EDAWEYMAPRECALFILDETACIL---SRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 + + +L + D + L N + E GT A Sbjct: 88 SNYLGLASTNGHSLELFDPSGAFLLGIHINISSTPV---------LSIVFNESTTGTTAH 138 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPV---------EQ 169 LA + + + +++ V N A P+ D G + GT+AL + Sbjct: 139 GLATYHKKPFQLIGPENYLDVWQNMICSAAPILDEMGEVLGTLALVQDMGEKPWEKNRSN 198 Query: 170 TTAADLPLTLAIAREVGNLLLTD-------SLLAETNRHLNQLNALLESMDDGVISWDEQ 222 L ++A +GN + + + + L +LE +D+GVI+ + Sbjct: 199 LHIHSLGWVSSLAEAIGNQIKIQNSYDVLNQVNNDLRKATETLKIILEFIDEGVITIEPN 258 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + N + +R+L ++ +GR I E L + L + + ++E + + Sbjct: 259 GRILSSNHEGSRILNVNHGEIRGRNIGEFLLPRSALMDYVADKKTVDYMEEYVVNGREEK 318 Query: 283 DAVITLKPII---ETQGTSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLI 338 +++L+P+ + IL + +++ L+ ++ G F + + Sbjct: 319 QYLVSLRPVYKQGNDELDFAILRFNHSDKINALVNTRSGAVAKFRFEDIVGQSEAMLKAK 378 Query: 339 HFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG 398 R+ AR+ VLL GE G GK L +QAIHN S R GP+IAVNC + E G Sbjct: 379 ALARRFARTRENVLLLGESGTGKELFAQAIHN-SHRPGGPFIAVNCAAMPRNLIESELFG 437 Query: 399 GD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLI 454 + T +NGR ++ELA+GGTLFL++I + +ELQ+ LL+V++ ++ R+ R Sbjct: 438 YESGSFTGAEKNGRPGKIELANGGTLFLDEIGDMPIELQAVLLRVLQDKMVMRIGGRNYR 497 Query: 455 PIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLE 514 +D ++I T DL + ++ +F LY+ + I IPPLR R I L + + + Sbjct: 498 QVDFRLITATNQDLKLSAQERKFREDLYFRISVLNIEIPPLRSRGFDIAILAEHFIENYA 557 Query: 515 KRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA 573 KR I +A R++ WPGN +L + + S+ G+I +S LP+ L ++ Sbjct: 558 KRVGLPAAVISPEAKRRILEYNWPGNVRQLENAMIYAVNLSEEGQIMLSHLPKELSEKRT 617 Query: 574 T----DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 + + S ++EK I A + G + S LLGI +TTL+RK+K+H Sbjct: 618 ALPMVSEKECDKPEELFSMKDLEKVTIKKALERAGNSVAIASDLLGISKTTLYRKLKEHN 677 Query: 630 IDA 632 I Sbjct: 678 IHY 680 >UniRef50_B2UEU9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Ralstonia pickettii 12J RepID=B2UEU9_RALPJ Length = 687 Score = 669 bits (1728), Expect = 0.0, Method: Composition-based stats. Identities = 144/640 (22%), Positives = 272/640 (42%), Gaps = 32/640 (5%) Query: 13 SPLIATSWERCNKLMKRETWNVPH-QAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + +I S R + T N + + + + +E +E ++ Sbjct: 40 AAVIEQSHRRSTTYGLQVTDNPDFSALSKAALSLAIEQNRTLYAYALPVMETLYEQISHH 99 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D IL GD L++ + + G +E + GT + A + G V+ Sbjct: 100 HNIVLLTDAQGVILHAQGDKDFLEKADRVALSLGVTWSERLRGTNGIGTALVEGAPVQVS 159 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 A++H+ V A PLFD+ G++TG + ++ A + L A ++ N L Sbjct: 160 ANEHYLGVNHVLNCSAVPLFDASGKVTGVLNVSGDPGNFPAHTMALVRMSALQIENQLFA 219 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + HL+ L+ ++ +G++S+ G + +N A L L +A G + L Sbjct: 220 AANPDCITLHLHSRPELIGTLMEGMLSFGLDGRYRAVNRSALFQLGLTPSALAGHTLESL 279 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQ---------HQFIDAVITLKPIIETQGTSFILL 302 L L ++ + + Q D L+P+ + Sbjct: 280 LGLSVPALFDHYRSATPDPLRVHAANGISLYAKVSIRQRTDCGSLLRPLSADKVG----- 334 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 E + + + + DP+ R+I ++ P L+ GE G GK Sbjct: 335 -QEAESRAGTASPVRARATSGLGQLDTGDPEIARVISKLKKFNGRDIPTLIIGETGTGKE 393 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGG 418 LL+QAIH +S R AGP++AVNC + + E G + T G L ++ A+GG Sbjct: 394 LLAQAIHEDSPRCAGPFVAVNCASIPETLIESELFGYEEGAFTGARRRGSLGKILQANGG 453 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL++I + + LQ+ LL+V+++ ++T L + + IP++V ++ T +L ++ + F Sbjct: 454 TLFLDEIGDMPLTLQARLLRVLQERIVTPLGSAKAIPVNVALVCATHRNLRDMIARGTFR 513 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 LYY L+ + +PPLR RR A++N L + + R ++ + L L + WPG Sbjct: 514 DDLYYRLNGLLVKLPPLRQRR-DFEAVLNRLL--VGEHGGQRFRVAPEVLRLLKTYDWPG 570 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST---------SLSFA 589 N +L +++ + + ++ I++ DLP+ + + A + Sbjct: 571 NIRQLVNLVRSAMVMAEGDEIQLDDLPDDFLEDVRHREQPAQEPPAHDMLPVSADQATLD 630 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 +E I + GG + + LG+ R ++RK++ G Sbjct: 631 LLESSLIRQVLKSNGGNVSAAARALGVSRNRIYRKLQSLG 670 >UniRef50_B8G1B8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Clostridia RepID=B8G1B8_DESHD Length = 628 Score = 669 bits (1727), Expect = 0.0, Method: Composition-based stats. Identities = 150/636 (23%), Positives = 264/636 (41%), Gaps = 37/636 (5%) Query: 10 RGISPLIATSWERCNKLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + I+PLI SW+R + + ++ ++ + L ++ + Sbjct: 18 QNIAPLIYRSWQRSLAHNINPAVISNNKFLNDSGLRELRESREDLIRAAGSVLPFLFQLL 77 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 ++ + D+ A IL GD L + + + G E + GT A+ A I G V Sbjct: 78 NSSNFSILLGDKDAFILESLGDGPFLSKAQRIFLSPGGNWGEDVKGTNAIGTALIEGMPV 137 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 H+ Q A P+ +G + G I ++ + L + L AR + Sbjct: 138 TIQGMDHYVQENHFLTCSAAPIHGLQGEIIGVIDISAEIGNQHC-TLDIALVGARLIEQN 196 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L ++ E + ++ + DG +S D G + +NA A ++ GR + Sbjct: 197 LRHLTIERELKFYQQGSKLAVDLLKDGCLSIDRHGMITQVNATGASLIGRKKDDLIGRHV 256 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPV 306 T++L P K + + + V + I + G+ + ++ + Sbjct: 257 TDVLGAP-------KGWVLNQDTLDLRHKDGKGHELVTHFQRISDNSGSSLGAVGVIQII 309 Query: 307 EQMRQLMTSQLGKVSHTFAHM--PQD-DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 Q ++ ++R ++ +AA++ F VLL G+ G GK + Sbjct: 310 GQ--------------NLDNLSWVGRTSLKSREILEKAHKAAQTDFSVLLQGQTGTGKEI 355 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGT 419 +++ IH S R GP+IA+NC + L E G T G+ + ELAHGGT Sbjct: 356 IARMIHELSPRKNGPFIALNCAAIPNTLLESELFGYADGAFTGARRGGQPGKFELAHGGT 415 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 +FL++I + + Q ALL+++++ + R+ + L IDV+VI + DL LV+ + F Sbjct: 416 IFLDEIGDMPLNAQVALLRLLQEKALVRIGGKTLQKIDVRVITASHKDLKALVDAHAFRH 475 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPG 538 L+Y L I +PPLR R +P LV + + + + + S +WPG Sbjct: 476 DLFYRLKVVSIELPPLRERLEDLPELVTHFIHKACAAIGRPMIDMAESVYPYFYSYSWPG 535 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL + + + + + V DLP + + A ++ I+ Sbjct: 536 NVRELENCLAGMVAMCNGSLLTVRDLPPEVRESLSEKTEDEDVSL----LASQTRQIILQ 591 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 A T G+I S LLGI RTTL+RKMK+ I + Sbjct: 592 ALVKTDGKILPASRLLGISRTTLYRKMKELKISLPR 627 >UniRef50_C6QTT1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacillus sp. Y4.1MC1 RepID=C6QTT1_9BACI Length = 614 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 131/630 (20%), Positives = 253/630 (40%), Gaps = 45/630 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D ++ IA SW C + A +R + +L + LE + Sbjct: 22 DQARMNKRIAESWYLCRQNNVNPFDGKGKIILAAPLLAERKKRNQRLLHIAMPILEKLQK 81 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 Y + L ++D +L G+ Q ++ A+ F +G E +GT A+ + + Sbjct: 82 YFQETKSILLLIDPEGYVLYAKGNQQVMEMAEAIKFVEGVKWTEDEVGTNAIGTSLRIRE 141 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP--VEQTTAADLPLTLAIARE 184 + H+ W A P++D L G I ++ P L +A A Sbjct: 142 PITIAGLDHYSVASHQWCCSAAPIYDENRELAGIIDVSYPVNHYPFHDHVLATVVATAYT 201 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + + E + N +++ D V+ + +GN+ +++ LR + Sbjct: 202 IEQQFHMQAKEDELELLKHACN--MKNPDSPVVICNNKGNIVWVSRC----LRTSFSNML 255 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 +++ + IK P+ H I + L+ H Sbjct: 256 DQSLENVCGD----HWVIKSKTPIYS-----SVHHDMIGYRVMLQKTENHDFNFISTTFH 306 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 FA + +I + A++ V + GE G GK L+ Sbjct: 307 -------------------FAGVIGKSAAFANVIKSCEKVAKTDATVHITGETGTGKELI 347 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTL 420 ++AIH S R P++A+NC + E G + T + G + A+GGT+ Sbjct: 348 ARAIHQNSRRKNRPFVAINCGAIPKELIGSELFGYEEGAFTGAKRTGHKGKFVQANGGTI 407 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + E+Q ALL+V+++ + + + IP+D++VI T DL LV + + Sbjct: 408 FLDEIGEIPPEMQIALLRVLQEREVVPIGGTKPIPVDIRVITATHCDLYQLVREGKLRED 467 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 L+Y ++ + I +P LR R+ IP L+ ++ + + ++ + ++ WPGN Sbjct: 468 LFYRIYVYPIKVPALRERKEDIPFLIQY----YCQKNNWPVSFSNEVIQLFMTYHWPGNI 523 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL++V+E + + + + +L + + + T ++EK ++ Sbjct: 524 RELFNVLERIRIEYGDHIPSIPELKSMFIGWENQGEHRKSEQKTLSYREQIEKNHMMEML 583 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + T G I +A L I R+T +RK+K++ + Sbjct: 584 EKTKGDIARAAAELNIPRSTFYRKLKKYHL 613 >UniRef50_A5N2U4 Predicted signal transduction and transcriptional regulator protein n=2 Tax=Clostridium kluyveri RepID=A5N2U4_CLOK5 Length = 659 Score = 668 bits (1725), Expect = 0.0, Method: Composition-based stats. Identities = 140/635 (22%), Positives = 267/635 (42%), Gaps = 15/635 (2%) Query: 8 DGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + IA SWERC N + + + + + + +++ +E Sbjct: 30 DRDVLRNDIAASWERCINSQVDPLKRNSGNIIYDLRDMLEQEKNNLLFKIAEPFMKNLYE 89 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + P + +E + G+ + + + G E IGT A S+ ++ + Sbjct: 90 VIKPLGFIAMLGNEDGINIDMGGNKKMMSIAEKINAVKGASFEEKYIGTNAASICSVEKR 149 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC-PVEQTTAADLPLTLAIAREV 185 + +H+K + NW + P+F+ +G + I ++ + T + L + AR + Sbjct: 150 VAQVTYYEHYKANMHNWCCSSVPIFNKEGNMIAVINVSNMDTSKHTPLLISLIASTARLI 209 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 N++ L ++ ++ D G + IN A +L + S G Sbjct: 210 EMKFKLYDANDIYNQNYWFLKESMKKNPRALLFLDNNGCINHINENAVEMLGVSTKESIG 269 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R ++E+ + + +K++ ++++ + + + ++ P Sbjct: 270 RHLSEVFDKKYIKNDKMDVGSNVKNIILEDRNRNKTYLKLSKILSSDKYHLGYVGIIEQP 329 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 V+ + K ++F + + + + I ++AA + V + GE G GK L + Sbjct: 330 VKN-----SGNHHKAKYSFEDIKYNCSKMDKEIKKAKRAAYNDMVVFINGESGTGKELFA 384 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLF 421 QAIHN +R GP+IAVNC + E G + T + G+ + +LA GTLF Sbjct: 385 QAIHNYGKRCNGPFIAVNCGALPRELIQSELFGYEKGAFTGAKKEGQPGKFQLAQKGTLF 444 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +ELQ+ LL+V+++ +T L + +I +DV++I T DL + VE+ F L Sbjct: 445 LDEIGDMPMELQANLLRVLQEKTVTPLGSNEIIELDVRIITATNKDLLLEVEKGNFREDL 504 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGN 539 YY + I +PPLR R + L L +K+ D+ + L WPGN Sbjct: 505 YYRISGINIDVPPLRERGKDVEELFYKFLDKYASDVCEYKNIKVTDEFIRALCEYKWPGN 564 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS--LSFAEVEKEAII 597 EL +++ ++ + ++ I V DLP + + + S E I Sbjct: 565 VRELENMVISILNNLEDSCIGVEDLPAKILKCIKVEGNTKPENDGMYLKSLDSTEMINIE 624 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + I + + LGI R TL+RK+ ++ I Sbjct: 625 QTLKRCNNNISKSAKSLGITRATLYRKIDKYKIKI 659 >UniRef50_Q47HA8 Helix-turn-helix, Fis-type n=4 Tax=cellular organisms RepID=Q47HA8_DECAR Length = 679 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 156/633 (24%), Positives = 262/633 (41%), Gaps = 31/633 (4%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G G+ ++ SW R A G + R + + LE E + Sbjct: 47 GVGVRNVVLDSWRRSRSESVDPGIGSAPTANGDKIHQLRARSHDLYEAAKPVLETLREIL 106 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 + + D + IL NG+ + + G +E +IGT A+ + QAV Sbjct: 107 RESGTLIMLSDPSGTILDLNGESRARDAGEQINLAPGGCWSEDLIGTNAIGTTIATHQAV 166 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + A +H+ + +W A P+ D GR L G + ++ E L L ++ A+++ Sbjct: 167 QIYASEHYCIDVKHWTCAAAPILDPLGRNLLGVVDVSGVKETFHGHTLGLVISAAKQIEG 226 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQF---INAQAARVLRLDATASQ 244 +L + ++ +D V+ +D++G + QA ++ + Sbjct: 227 ILARRDAEQHGRLLEHATDSFSRYGNDCVVLFDQRGRIVKTCGCMQQARKMYGVRLPFEV 286 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH 304 G +T L AV PL P+ G LL+ Sbjct: 287 GSQVTAL--DFAVHPDERLSQTPLWLRPEWLH-------------PVRSRDGDLGTLLVI 331 Query: 305 PVEQMRQLMTSQLGKVSHT----FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 P+ + S + T FA + ++ A PVLL GE G G Sbjct: 332 PIGTSARQSVSIPPPATRTTDEVFAEIIGTSQAISTAKARAKRIAPLDLPVLLLGETGAG 391 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGR-LSRLELAH 416 K + ++AIH S + GP+IAVNC LA E G T G + E A Sbjct: 392 KEVFARAIHKASSKPEGPFIAVNCGALTRELLASELFGYSEGAFTGARRGGLPGKFEQAD 451 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL++I + +++Q LL+V++ GV+ RL + + V++IA T DL R Sbjct: 452 GGTLFLDEIGEMPLDMQPHLLRVLQDGVVVRLGDTKERKVAVRIIAATNRDLQADSSTGR 511 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCA 535 F L++ L + +PPLR R A++ + + L +++ K + + L L+ Sbjct: 512 FREDLFHRLCVVSLLLPPLRERPEDTEAIIGHLNQRLARKYGCPPKSLAPEVLHHLLRYR 571 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS---FAEVE 592 WPGN EL +V E + SD+ RI S LP H+ ++ ++ +++ AE+E Sbjct: 572 WPGNIRELQNVFEAMFALSDSNRIDGSLLPPHIAAAAVDAVLARGEVTQAMAAGRLAEME 631 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + AI A + G + + LGI R+TL+ K+ Sbjct: 632 RAAINAAVANSHGNLSMAARNLGISRSTLYVKL 664 >UniRef50_P45512 Glycerol metabolism operon regulatory protein n=68 Tax=Enterobacteriaceae RepID=DHAR_CITFR Length = 641 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 457/638 (71%), Positives = 538/638 (84%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 M+ + G+ +S +IA SW RC+K M+RETW PHQAQG+TF SI RRK A+LT+ QAA Sbjct: 1 MTTHTQDIGKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAA 60 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 LEDAWE+M R CAL ILDE+ACILSR GDPQT++QL+ LGF DG+YCAE IIG+CALSL Sbjct: 61 LEDAWEFMDGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSL 120 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 A + GQ KT DQHFKQ L W+FC+TP+FD+ GRL G+I+L C VE +DL LTLA Sbjct: 121 ATMPGQPTKTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHECVSDLSLTLA 180 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 IAREVGN LLTDSLLAE+NRHLNQ+ LLESMDDGV++W+EQG LQF+NA+AA +L LDA Sbjct: 181 IAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDA 240 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 ASQG+ I +LL LP +L++AIK A L HVE TFESQHQF+DAVITLKPI+E QG SFI Sbjct: 241 QASQGKNINDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFI 300 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 LLLHPVEQMRQLMTSQLGKVSHTF M DDP+TRRLIHFGRQAAR SFP+LLCGEEGVG Sbjct: 301 LLLHPVEQMRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVG 360 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL 420 K LLSQAIHNESERA+GPYIAVNC+LY ++ L ++F+G TD+ENGRLSRLELA+GGTL Sbjct: 361 KELLSQAIHNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTL 420 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FLEKIEYLA ELQSALLQVIKQGV+TRLDARRLIP+DVKVIATTT DLA LVEQNRFSRQ Sbjct: 421 FLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQ 480 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYYALH+FEI IPPLR RR SIP+L+ +L SL+KRFS+ LKIDDDALA+LV+ +WPGND Sbjct: 481 LYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGND 540 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 FEL S+IEN+A+SSDNG IR+S+LP++LF E+ + +++ L SL+F +EKEAII+AA Sbjct: 541 FELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAA 600 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 +VT GR+QEMS LL IGRTTLWRKMKQ+ IDA QFKR+ Sbjct: 601 RVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRK 638 >UniRef50_Q6AL05 Related to transcription activator Stc n=1 Tax=Desulfotalea psychrophila RepID=Q6AL05_DESPS Length = 657 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 148/636 (23%), Positives = 271/636 (42%), Gaps = 17/636 (2%) Query: 7 NDGRGISPLIATSWERCNKLMKRETWNVPH---QAQGVTFASIYRRKKAMLTLGQAALED 63 + + +I S++R K + + F ++++ + LE+ Sbjct: 15 PNHEKLQKIIDASFKRSKKYNITPQVDGSPESTKLTEQAFRQRIKKQQLFYDTTKEQLEN 74 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 ++ + + D IL GDP + E +GTCA+ L + Sbjct: 75 LYDLLKGTGFCMIFTDNEGYILYLVGDPDLQAHFAHRRCIPRYRWTEKDVGTCAIGLTLL 134 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKG-RLTGTIALACPVEQTTAADLPLTLAIA 182 ++ Q + + ++P+F G L G I L+ E + L + Sbjct: 135 EKISIFLPGTQMYATTAKKISNASSPIFSPDGKELLGVICLSGYSENMHVHTIGLVSQAS 194 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 + + + L + E + A++ES G+++ D+QGN+ N +A +L + A A Sbjct: 195 KNIRSRLQSLEKQQEIAIKNQYMTAIIESKSSGIVTVDQQGNIVQTNHKARNLLAIKADA 254 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSF 299 +T + + +++ + E S+ + +L PI + Sbjct: 255 RDNL-LTTYIGNSLNIADCLERGRGFRARE--IVSKKTGVSYFASLDPIRLEEEQLVGGI 311 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + E +R+ + + TF + D P + +H R +A+++ VLL GE G Sbjct: 312 FTFVEKNEALRRAVKLIGTQAPFTFDSILGDSPALKSALHLARISAKNTASVLLYGETGT 371 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELA 415 GK L +QAIHN SE G ++A+NC L E G + T + GR ++ELA Sbjct: 372 GKELFAQAIHNASEHKNGSFVAINCGAIPKELLESELFGYEEGAFTGAQKGGRPGKIELA 431 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 + GTLFL++I + E+Q LL+V++ G I R+ R IP+++++I+ T DL +++ Sbjct: 432 NNGTLFLDEIGDMPFEMQVKLLRVLQFGEIQRVGGLRTIPVNLRIISATHKDLKKMIDVQ 491 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD-DALARLVSC 534 +F LYY + I IPPLR R+G I LV + +F R ++ + Sbjct: 492 QFRADLYYRISTLRINIPPLRERQGDILKLVQYFIDRHIIKFDRRKQVLPSQTRLAISKY 551 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 +WPGN +L S E +++G + + + + ++ + + EVE + Sbjct: 552 SWPGNIRQLESATERAIYLAEDGVLLPEHF--AISDLFSNTNKEVVKVVGTQTLEEVESQ 609 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I I + + LGI R TL+RK+ ++ I Sbjct: 610 IITETLAFFDNNISKTAQSLGISRPTLYRKIDKYRI 645 >UniRef50_A6LVG7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Clostridium RepID=A6LVG7_CLOB8 Length = 654 Score = 664 bits (1714), Expect = 0.0, Method: Composition-based stats. Identities = 148/650 (22%), Positives = 277/650 (42%), Gaps = 37/650 (5%) Query: 15 LIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 LI S +R + + + G +I K ++ + + ++ + + E Sbjct: 7 LIENSHKRSESYGVEKNSDHSNKILTGEELENILTINKELIEVSKIYIDMVFSAVMDNEF 66 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D+ CIL G + +L G Y E IGT A+ A + ++ A Sbjct: 67 IIVLTDKNGCILYIKGAEENNSKLGGNNLEVGAYMDEQNIGTNAMGTAIKEDRCIQITAT 126 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ + N A P+ ++KG + GT+ L + L L + + + N L Sbjct: 127 EHYIKRFHNLTCSAAPIHNTKGEIIGTLNLTGRRDMKHPHTLGLVVFGVKAIENELDKKG 186 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + N+ N + ++++++D G++ +++ + IN + +D + I +L Sbjct: 187 IRDILNQTYNYMESVIDNVDKGIMIVNKEYKVININKLGVEIFNIDKDLIISQDIHYILP 246 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 + + ++ + E + + ++ + ++ + ++ + Sbjct: 247 DLGNVIEELENHNDDIIKELKLKHTSRHKIRLVFKGLKHKENIIGMVVTISYEKEGKD-- 304 Query: 314 TSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 TF + D +I + A S VL+ GE G GK +L+QA+HN S Sbjct: 305 NKNATGAFFTFNDIIGDSAAIVNVITNCKVIANSPSTVLIQGESGTGKEILAQAMHNYSV 364 Query: 374 RAAGPYIAVNCELYGDAALAEEFIGGD---RTD-NENGRLSRLELAHGGTLFLEKIEYLA 429 R ++A+NC + E G + T G + E+A GGTLFL++I + Sbjct: 365 RRRNKFVAINCGAIPANIIESELFGYEDGTFTGGKRGGNPGKFEIASGGTLFLDEIGEMP 424 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 ++ Q LL+V++ G +TRL R IPIDV+VIA T +L V++ F LYY L Sbjct: 425 IDAQVKLLRVLQNGRVTRLGGSREIPIDVRVIAATNKNLKREVQKGNFREDLYYRLCVIP 484 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIE 548 IT+PPLR R+G + L++ LR + + + +ID +L+ WPGN EL + IE Sbjct: 485 ITLPPLRERKGDVKMLIDFFLRIKSFQLNKSIPEIDKSLYNKLLDYDWPGNIRELENYIE 544 Query: 549 NLALS----------------------SDNGRIRVSDLPEHLFTEQATDDVSATRLSTS- 585 N+ D ++ L + ++ + T+ + + Sbjct: 545 NIVNLDGRSSFNLWEFEDNQSFETDKTYDRKILKDGFLNKEIWEDDQTNGLLKNVNTEKT 604 Query: 586 ------LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 L+ E+E +AI A ++ + + + LGI R TL+ K+K+H Sbjct: 605 EYMVNTLNLEELEMKAIHEAVRINDHNMTKAAKTLGISRNTLYLKLKKHK 654 >UniRef50_B8FUC3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUC3_DESHD Length = 696 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 164/660 (24%), Positives = 286/660 (43%), Gaps = 32/660 (4%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALED 63 + I +A SW R + L + A I K ++ + +A D Sbjct: 38 DPKEYACIRLEVAESWLRSHDLGVNPYKSSLAEHLNSNEIARILAENKDLIEITKAVFVD 97 Query: 64 AW-EYMAPRECALFILDETACILSRNGDP-QTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + + AL++ D+ +LS G+ + + G +E +GTCA L+ Sbjct: 98 LKIKDIMTSNYALYLFDKNGVLLSHEGEKIKLISADYPESSIVGQVWSEATVGTCAHVLS 157 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD------- 174 + V + +H+ V N A PL + + G + ++ ++ + D Sbjct: 158 MHLKKPVYIVGPEHYCTVFQNSCTSAAPLTNEDNEIIGYLVVSYHIDFPLSHDSYYLSTY 217 Query: 175 -LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAA 233 L L A+A V N L + +L +++G+I D +G + IN + Sbjct: 218 PLGLITAMAVAVENKLRFTKSYQLLKSAHHMQEVILSVIEEGIIITDNRGKIITINKEVV 277 Query: 234 RVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 + GR I L + +A++ + EA + H ++ ++P+ + Sbjct: 278 NIFNTAEEEIIGRTIDRFL--GPQIGEAVRNNETVDIEEAICSNNH-DKSYLVLIRPLDK 334 Query: 294 TQG--TSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 +L ++P+E + L+T++ G ++TF + + I G++ + S+ Sbjct: 335 HGNYPNGAVLRVNPMEIINALVTNRTGAFATYTFDKIIGKSKAIKETISLGKRFSLSNEN 394 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-EN 406 +LL GE G GK L +QAIHN R GP+IAVNC + E G + T Sbjct: 395 ILLTGESGTGKELFAQAIHNA-HRPQGPFIAVNCAAMPRELIESELFGYEGGSFTGAERR 453 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 GR ++ELAHGGTLFL++I + +E+Q+ LL+V++ + R+ +D +++A T Sbjct: 454 GRAGKIELAHGGTLFLDEIGDMPLEVQAILLRVLEDKKVMRIGGHTYKKVDFRLVAATNK 513 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDD 525 DL + +N F L++ L I +PPLR R + L N + + + I + Sbjct: 514 DLERMSHENLFRSDLFFRLSILSIQLPPLRKRDNDVEVLANYFIGKYCAKIKRKAPLISE 573 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV---SATRL 582 +AL L S WPGN +L + + + I+ LPE L+ ++ + Sbjct: 574 EALEVLKSYGWPGNVRQLENSVIYAVNLAQGDLIQCRHLPESLYAASSSPAENYRDPPGM 633 Query: 583 STSLSFAE------VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 + S + +EK I NA T I + S LLG+ ++TL+RK K+ ID G FK Sbjct: 634 TGSYTLENIYKIDVMEKILIENALYKTRNNITKASELLGMAKSTLYRKAKELNIDMGTFK 693 >UniRef50_B2JW78 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Burkholderia RepID=B2JW78_BURP8 Length = 689 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 159/648 (24%), Positives = 262/648 (40%), Gaps = 25/648 (3%) Query: 9 GRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + ++ SW+RC P +++ ++ E Sbjct: 35 SADVRSVVDDSWQRCLVGHVNPGVDRAPPAVAETQLMQWRDANARLVSASLPLMQQTREL 94 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 ++ + + D IL GD + L+ S +G G E GT A+ A QA Sbjct: 95 LSQTGTVMLLADPDGLILQHEGDMRILEPASEVGLVPGCNWTELNCGTNAIGTALTLKQA 154 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V+ +HF + W AT + D G + G I ++ + + L LT+++A + Sbjct: 155 VQIHGAEHFCAGIKRWTCSATVIRDPMDGHVLGVIDVSGLADTYSRYSLALTVSLAGRIE 214 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA---ARVLRLDATAS 243 + L D++ + D ++ D++G L N Q R L D Sbjct: 215 SRLAKDAMERRLRLLDRCASGFGSHASDAMLVIDDKGRLVKANPQVVPTLRRLGFDVNLD 274 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G L L + P A E+ + + + I T + Sbjct: 275 AG---FVLPGLDTTADHPLTANAPPWLHYAKVETLREGSTVLGFVVVIPGTGNVRGAISP 331 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + + S G F + D R + RQ A S PVLL G+ GVGK L Sbjct: 332 SGGRDKLRSVHSGAG----AFERIIGDSRTLRAAVDKARQLAPSKVPVLLLGDTGVGKEL 387 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGT 419 +Q IH SERA GP++A+NC LA E G T G ++E A GGT Sbjct: 388 FAQGIHQASERAEGPFVALNCGGLSRDLLASELFGYAEGAFTGARKSGAAGKIEAADGGT 447 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +++Q LL+V+++ I RL ++ +++A T DL + + F Sbjct: 448 LFLDEIGEMPLDIQPHLLRVLQENEIYRLGENTPRKVNFRLVAATHRDLKDAIAKGSFRM 507 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPG 538 L+Y + ++IP LR R +P L++ L L + T D +A A ++ WPG Sbjct: 508 DLFYRIAVTTVSIPSLRERGEDLPTLISYWLGYLCDCYGLTPRSFDAEAYACMLKYEWPG 567 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLP------EHLFTEQATDDVSATRLSTSLSFAEVE 592 N EL + IE L ++ I V LP A +++ ++T S E Sbjct: 568 NVRELRNAIEGALLLAEGTTITVEKLPVEVAAAAATAVHLAQGEMTEPVMATGDSLKTAE 627 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI--DAGQFKRR 638 E I A GG + + +A LGI ++TL+ K++++ + +RR Sbjct: 628 AEYIRRALARCGGNLTQAAAQLGIAKSTLYEKLRRYDLIAAVSDVRRR 675 >UniRef50_C1PFE6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PFE6_BACCO Length = 610 Score = 662 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 152/632 (24%), Positives = 272/632 (43%), Gaps = 49/632 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I+ IA SW RC K H + R K L + + ++ Sbjct: 19 DPERINNRIAESWYRCKKRDVNPYLRKGQHILPVEKLLAHRERHKDFLNIAERHVKKMEP 78 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 ++D +LS +G+ +T+ + + F +G E +GT A+ +G+ Sbjct: 79 VFQEAGMMALLIDPCGHVLSVSGNRKTIFEAQKINFVEGVCWTEERVGTNAIGTTLETGE 138 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 AV +HF W+ A P++DS+ L G + L CP ++ L + ++A V Sbjct: 139 AVMVNGPEHFSVASHQWSCAAAPVYDSQRNLVGVMDLTCPYTESHPFMLAMVSSLAYTVE 198 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDG----VISWDEQGNLQFINAQAARVLRLDATA 242 + + +RH + +E D ++ DE+G A+R LR Sbjct: 199 QEI----VRMAKSRHERFIQKAVELSDQYGDRLLVITDEEGKAV----AASRPLRKKMPD 250 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL 302 GR I E+ Q V P+ ++ Sbjct: 251 YFGRTIEEM--------------------------TSQTDTIVNQSIPLPSSREKIGTCF 284 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + + + L + L K F + + + R A+ S + GE G GK Sbjct: 285 F--LSENKNLSGTLLQKEKFVFRGVTGISRSFQETLRKARIASLSDTTCFITGETGTGKE 342 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGG 418 L+++AIH S R GP+IAVNC + EF G T + G + E AHGG Sbjct: 343 LVARAIHENSSRKNGPFIAVNCGAVPKELMESEFFGYADGAFTGAKRGGHKGKFEQAHGG 402 Query: 419 TLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFS 478 TLFL+++ L +Q+ALL+V+++ + + + + + +DV++IA T DL LV++ +F Sbjct: 403 TLFLDEVAELPSAMQTALLRVLQERKVVPVGSAKEVSVDVRIIAATHKDLPKLVKEGKFR 462 Query: 479 RQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPG 538 L+Y L+ F + +P LR R+ +PAL+ + ++ + ++I + ++ WPG Sbjct: 463 EDLFYRLYVFPVRLPALRERKEDLPALIQY----ISRKKNQDVEIPPAVMKKMQDYHWPG 518 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL +VIEN+ L + G + + + + +++T +E++ I+ Sbjct: 519 NIRELMNVIENVRLLAVAGEEEAERYVDEYVSGETGLNGMEKQVTTLNPREAIERDMILE 578 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + T G + +L I R+T +RK++++G+ Sbjct: 579 ALKHTKGNAAAAAKMLDIPRSTFYRKLRKYGL 610 >UniRef50_A1VK76 GAF modulated sigma54 specific transcriptional regulator, Fis family n=20 Tax=Proteobacteria RepID=A1VK76_POLNA Length = 683 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 133/654 (20%), Positives = 244/654 (37%), Gaps = 41/654 (6%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQA-QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 LI S R A K +L +E E +A Sbjct: 27 PNLIMESHTRSKAYGIDRDDIPDFSPESPARLAQGLDENKFLLEHAMPVMETLHEQIANT 86 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + +L GD L++ + G +E GT A+ A V Sbjct: 87 HNMVLLTASNGLVLHSLGDMDFLEKAMQVALVPGVCWSEKSKGTNAIGTALTEELPVTIR 146 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 +HF P+FD G++ G + + + L + + N + Sbjct: 147 GSEHFMHANQFLTCSCAPVFDPYGQIIGALDVTGDQRNFHQHTMALVRMSVQMIENHMFA 206 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 D H + + L ++ +G+ + +G N A L + A +G + L Sbjct: 207 DIFPTAVRIHFHTRSEFLGTLVEGIAVFSHEGRFLSANRSAQFQLGMSFNALKGHTFSSL 266 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP--IIETQGTSFILLLHPVEQM 309 +P ++ + L + + I +KP + +P + Sbjct: 267 FDIPISRLHELR-GNALTKPQQFVLHNGVSVWCRIKMKPLSLWSDGQAINTAASNPFKPP 325 Query: 310 RQLMTSQLGKVSH------------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + + T ++ DPQ +I P+++ GE Sbjct: 326 EAKNYAGMAPAAETGFSPARKVQLSTLHYLNTGDPQVATVIQKLSMVRGRDIPIMILGET 385 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLE 413 G GK LL+QAIH +S+RA P+++VNC + + E G + T + G +++ Sbjct: 386 GTGKDLLAQAIHGDSDRAGHPFVSVNCASIPETLIESELFGYEEGAFTGAKKKGATGKIQ 445 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 A+GGTLFL++I + LQ+ LL+V++ ++ L A R + +DV VI T +L ++ Sbjct: 446 QANGGTLFLDEIGDMPRHLQARLLRVLQDKKVSPLGAGREVEVDVAVICATNKNLKEMIV 505 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 + F LYY L+ + +P LR R ++ L+SL ++ I D + + Sbjct: 506 RGEFREDLYYRLNGLVVRLPALRHRT-DFEVVMQKILKSLC-ENGAQIGISADVMTLFHT 563 Query: 534 CAWPGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFTEQATDDVSATRLSTSLS----- 587 WPGN +L++++ + G I+ + LP+ E + + S S + Sbjct: 564 HQWPGNFRQLHNLLRTAVVMVGCEGVIQRNHLPDDFLEEHEHVLQAVAQPSPSSAAAPEN 623 Query: 588 -------------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 +V A+ Q G + + LG+ R T++R+ +Q Sbjct: 624 AMPNMPGDTDGQRLQDVALVAMTKMLQHHKGNVSAAAKALGVSRNTVYRRKEQL 677 >UniRef50_C8QHJ7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Enterobacteriaceae RepID=C8QHJ7_9ENTR Length = 652 Score = 661 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 167/646 (25%), Positives = 283/646 (43%), Gaps = 44/646 (6%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 + I SW+R + A+I ++ + ++ +E+ Sbjct: 41 QRGEQPGWMRRSILQSWQRSQQRGTDPADFTYIAPPAEELAAILEHNAELILVARSIMEN 100 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 Y + + + D L G T G+ E ++GT + I Sbjct: 101 LLAY--NPDGHINLTDAQGVTLHFCGADMT---------PVGSILREEVLGTNCTARCLI 149 Query: 124 SGQAVKTMADQHFKQVLWNWA--FCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 + V ++ +++K L A P+ D+ G+L G + L + A L A Sbjct: 150 EQRLVYVLSGENWKFDLRKRHRQCAAAPVRDASGQLIGVLTLTATPDNFNAHTLGTVQAA 209 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDA 240 A VG L+ LLAE ++LE++++GVI D G ++ +N A ++ LD Sbjct: 210 AEAVGQQLMLRRLLAEQQ-------SILETLNEGVIVCDRHGRIKTLNRYARQIFSGLDP 262 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQH-QFIDAVITLKPIIETQGTSF 299 A ++L P ++ E F Q I +I+L P + Sbjct: 263 DAGT----IDVLLQPQ--GASLLTMPFCNDRELQFMPDGVQSIPCLISLMPAPDG---GR 313 Query: 300 ILLLHPVEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 +L L +++R + +G S+TF + P+ ++ I R ++R+ VLL GE G Sbjct: 314 VLSLRENQRIRAITRRVMGVSASYTFDMIRGHAPRVQQAIQKARASSRTDSTVLLTGESG 373 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NENGRLSRLEL 414 GK L +QAIHN S R +IA+NC + E G T G + EL Sbjct: 374 TGKELFAQAIHNASPRQQEAFIALNCGALPRDLVQSELFGYVDGAFTGSRRGGSPGKFEL 433 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTLFL++I + +E Q++LL+V+++ + R+ A + ++V++IA T +L VE+ Sbjct: 434 ADGGTLFLDEIGEMPLEAQTSLLRVLQESEVVRIGAANPLKVNVRIIAATHCNLLDAVEK 493 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVS 533 F R LYY L+ + IPPLR R+ IP LVN + +L R ++ +A+ L + Sbjct: 494 GAFRRDLYYRLNVVSLAIPPLRERQEDIPGLVNTFILALCARLKRIAPQVSPEAMRCLQA 553 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEK 593 WPGN EL +++E + + I DLP+ + Q S E E+ Sbjct: 554 WHWPGNVRELENLVERMVNLCEGLEIDRQDLPDDMVQRQQPPVQLP-------SLQENER 606 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV 639 + ++ G +++ + LLGI RT L+ K+ Q +D +RR+ Sbjct: 607 QHVLQVVAEQHGNLRQSAQLLGISRTALYNKLNQWQVDLASLRRRL 652 >UniRef50_B9J2Z6 Sigma-54-dependent transcriptional activator n=70 Tax=Bacillus RepID=B9J2Z6_BACCQ Length = 616 Score = 660 bits (1703), Expect = 0.0, Method: Composition-based stats. Identities = 134/634 (21%), Positives = 269/634 (42%), Gaps = 49/634 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I+ I+ SW RC + N F ++ + L + +++ + Sbjct: 21 DSNRINERISESWYRCKQANVNPHMNKGQKILSSNIFQDQKKKSEIFLDIAIPQIQNMRK 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + + ++D +LS +G+ QTLQ+ + F +G E +GT A+ A + Sbjct: 81 TIDELQMMALLIDPDGYVLSLSGNKQTLQRAKQINFIEGVKWTEAAVGTNAIGTALEIEE 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 A+ +H+ +W+ A P+ + G+L G + +CP+E + L + +IA + Sbjct: 141 AIMISGTEHYSVASHSWSCAAAPIHNDDGKLIGVLDFSCPIEFSHPYMLGMVTSIAHAIE 200 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA-ARVLRLDATASQG 245 E + L+ +++S D+ V+ + + + + + RV Sbjct: 201 RECSIRVHQNELHLIHRFLD-VIDS-DEQVVICNHRDVIVSASKRVRERVCNWSR----- 253 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 + L ++ +K + P+ + Sbjct: 254 ------MKLEDLMHYGLKTKLEV---------------------PVYSNNRMIGKCIYVK 286 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + + ++ TF + + + + + + V +CGE GVGK ++ Sbjct: 287 GNKQVKSFSTSPFINGITFPGVIGTSSAFQHTLEEIKLVSPTDASVYVCGETGVGKEYVA 346 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLF 421 +AIH S R GP+IAVNC + E G T G + E A GGT+F Sbjct: 347 RAIHENSPRKNGPFIAVNCGSLPKELMESELFGYAEGAFTGARRQGYKGKFEQADGGTIF 406 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + E+Q ALL+V+++ + + + + IP+++++I T DL LVE+ +F + L Sbjct: 407 LDEIGEVPPEMQVALLRVLQERTVNPIGSSKEIPVNIRIITATHKDLLRLVEEGKFRQDL 466 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY LH + + +P L R+ IP ++ KR + + + WPGN Sbjct: 467 YYRLHVYPLYVPSLIERKEDIP----YFIKHFCKRKNWNVVFPKSICNQFSQHTWPGNIR 522 Query: 542 ELYSVIENLALSSDNGRI---RVSDLPEHLFTEQATDDVSATRLSTS--LSFAEVEKEAI 596 EL +V+E + + S I ++S L + + Q ++ A + +++++++ Sbjct: 523 ELLNVLERIYILSQGREICEKQISFLLQTMMGNQPHFELQAENKTEKTLNFREKIQRDSM 582 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I A + T G + + LL + R+T +++M+++ + Sbjct: 583 IEALEKTNGNVSLAAKLLDVPRSTFYKRMQKYKL 616 >UniRef50_Q6AR13 Related to sigma54-dependent transcriptional regulator n=1 Tax=Desulfotalea psychrophila RepID=Q6AR13_DESPS Length = 630 Score = 659 bits (1702), Expect = 0.0, Method: Composition-based stats. Identities = 156/636 (24%), Positives = 275/636 (43%), Gaps = 24/636 (3%) Query: 3 GAFNNDGRGISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAA 60 G+ + +I S +R + + + K +L A Sbjct: 8 GSIPTKEQMQR-VIRASHKRSRQYGVNQETRNLEQKRLSPAELEKKQDENKELLGAIAAT 66 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 + + ++ M+P E + D IL G + + + F+ G E +GT A SL Sbjct: 67 INEFYDLMSPEEFLVGFADSEGYILHLAGGDRARETSADRQFSLGYRWTEKDVGTTATSL 126 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 +++ H+ + A P+F +G L G++ + L + + Sbjct: 127 CLRLKVSIQLKGRDHYCKQAQGLLSSAAPIFGHQGVLLGSLCIFGDKSLIHPHTLIMITS 186 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 AR + + E + L+ ++E+ G++ D +Q IN QA ++L +D Sbjct: 187 SARSIERHMRLMRWNTELISNAGFLDNVIEAAGTGLLIIDTDLIVQKINYQAKKILNVD- 245 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI--IETQGTS 298 +G++I+ L L L + K+ E + + I V + +P+ + Sbjct: 246 -DLKGKSISSLSGLQLDLDSIFENPSVWKNRECHIQHNKKDIHLVYSAQPVLSKNDKPLG 304 Query: 299 FILLLHPVEQMRQLMTSQLGKVSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 +L + +R+L+ G + TF + P + + ++A+ S VLL GE Sbjct: 305 AVLNITKFSNIRKLIDKISGIKPYFTFDSLIGSSPAFTKAVDLAKRASHSEATVLLLGET 364 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLE 413 G GK L +QAIHN ++ A P++ +NC L E G T + GR + Sbjct: 365 GTGKELFAQAIHNGAKGADKPFVPINCGAIPGELLESELFGYAEGAFTGAKRGGRSGKFI 424 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 LA+ GT+ L++I + ++Q LL+V++ V+ + AR+ + + ++IA+T DLA + Sbjct: 425 LANDGTMLLDEIGDMPHDMQVKLLRVLQSKVVQPVGARKPLQTNARIIASTHVDLAEAML 484 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRG-SIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 NRF R LYY L+ +I IPPLR R I AL + L ++ + + DA+A LV Sbjct: 485 HNRFRRDLYYRLNILQIKIPPLRERGEVDIKALAHYFL----RKNNPEFQFTADAIAGLV 540 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 + WPGN EL + I+ + I V DL + + + + ++E Sbjct: 541 AYHWPGNVRELENTIQRALHVCKDQTITVKDL-------GLSKQDLSKKAGFQGTLLDME 593 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 K+ I + T + E + LGI R TL+RK+KQ Sbjct: 594 KKVIAETLRETKSNMAEAARRLGISRATLYRKVKQF 629 >UniRef50_C6WXM6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Methylotenera mobilis JLW8 RepID=C6WXM6_METML Length = 642 Score = 658 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 146/638 (22%), Positives = 257/638 (40%), Gaps = 37/638 (5%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 + I+ I SW RC A + + +L L Q +E E Sbjct: 26 EQGAIAEAIERSWRRCLANGIDTNSPQSLEVVTAQELALKREKNQQLLKLAQPEMETLNE 85 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 +A + + D+ IL G L + + + G E GT A+ I Sbjct: 86 QIAHTRNVVILTDDEGVILHSLGGHHFLNEEQRIALSAGASWNENHRGTNAIGTVLIEQS 145 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 A+ +HF + + A P+F ++ +L T+ ++ + L L A+ + Sbjct: 146 ALTVQGAEHFMAYHHSLSCSAVPIFGAENQLIATLDVSNDFNMSQQHTLALVKMSAQMIE 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L S E H + + ++ +GV + + G L N L L+ + + + Sbjct: 206 NRLFMASHKGEIALHFHARPEFIGTLWEGVAIFTDSGQLVATNRSGQFQLSLNTSNTASQ 265 Query: 247 ---AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 L +P ++ P+ G + + Sbjct: 266 QAINFNNLFDVPFASL---------------LRQVGSTDKLIV---PLRLNNGARIYVQM 307 Query: 304 HPVEQMRQLMTSQLGKVSHT----FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 P+ + Q+ T+ V T + D + R + +Q P+L+ GE GV Sbjct: 308 EPLNKKPQISTTPPATVKRTSAANLDLLDSGDAKISRAVQQIKQVLSRDIPILIQGETGV 367 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELA 415 GK L ++AIH S + GP++AVNC + + E G + T G ++E A Sbjct: 368 GKELFARAIHEASAQHKGPWVAVNCAALPEGLIEAELFGYEEGAFTGARRKGSPGKIEQA 427 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 +GGTLFL++I + + LQ+ LL+V+++ +T L + + IP++ +I+ T L VE Sbjct: 428 NGGTLFLDEIGDMPLSLQARLLRVLQERTVTPLGSTKTIPVNFSLISATNLKLKEKVESG 487 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA 535 F LYY L+ + +PPLR R + AL++ L + ++I + A + Sbjct: 488 EFRSDLYYRLNGLSVALPPLRER-SDLQALIDVIL---NIEQAGAIEITPEVRAIFQAHT 543 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE---QATDDVSATRLSTSLSFAEVE 592 WPGN +L++V+ +D I L + E ++ + + ++ Sbjct: 544 WPGNIRQLHNVLRTALALADGAAISTLHLTQDFIDEMSLSKPSLIANVATANPVDLDDLT 603 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +AI A Q G + ++ LGI R TL+RK+K GI Sbjct: 604 NQAIRRAMQTEAGNVSAVARQLGISRNTLYRKLKTMGI 641 >UniRef50_Q0JZT0 Transcriptional regulator, PspF-family n=2 Tax=Burkholderiaceae RepID=Q0JZT0_RALEH Length = 650 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 136/645 (21%), Positives = 244/645 (37%), Gaps = 35/645 (5%) Query: 10 RGISPLIATSWERCNKLMKR-ETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 + LIA + R + + + +E + Sbjct: 25 ADRAGLIARAHARSAGFGLDVRHAPGFDAVSPRALGELVDASRDLYRHALPVMETLHAQI 84 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 A + + + D + IL GD + + + + G +E GT A+ A + Sbjct: 85 ANTDSMVLLTDSSGVILHSLGDGEFVARARRVALAPGVSWSEPSKGTNAIGTALAEARPT 144 Query: 129 KTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 A +HF + P+ G + G + ++ + L A+ + N Sbjct: 145 LIHASEHFLESNHQLTCSCAPIASPTGAILGALDVSGDHRGFHRHTMALVRMSAQMIENH 204 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L + + + ++ +GV ++ G N L L A Sbjct: 205 LFANHFPDALLVRFHARPEFVGTLFEGVAAFSPDGAFLAANRSGLFQLGLAPHALADAGF 264 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 L P + T S+ Q + + I + P + Sbjct: 265 AGLFGQPVRAAMQARGGAAGSLQTLTLPSRVQVFARI--------EYLAAPIAVRQPGAE 316 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + A + D ++ R+ + +L+ G G GK L++AI Sbjct: 317 ---------DPLPPALAALDTGDAAVAAVLRRVRKVSGRDITILVQGRTGTGKEWLARAI 367 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEK 424 H S RA GP++AVNC ++ + E G + T G ++ AHGGTLFL++ Sbjct: 368 HAASPRAGGPFVAVNCAAIPESLIEAELFGYEEGAFTGARRRGSEGKVVQAHGGTLFLDE 427 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + Q L++V+++ +T L + R +P+DV+V+ T DL ++ F LYY Sbjct: 428 IGDMPLAQQVRLMRVLQERAVTPLGSARALPVDVRVVCATHRDLRAMIADGAFREDLYYR 487 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGNDFE 542 ++A +T+PPL R +P LV+ L+ + + + +D LA L WPGN + Sbjct: 488 INALAVTLPPLCER-SDLPLLVDRILQRQCEEAGLPSPVHVDAQVLALLRRHPWPGNIRQ 546 Query: 543 LYSVIENLALSSDNG-RIRVSDLPEHLFTE--------QATDDVSATRLSTSLSFAEVEK 593 L +V+ A+ ++ +I V LPE E A V A S S + E Sbjct: 547 LANVLRTAAILAEGEAQIGVEHLPEGFEQECGDEAERCDAAAAVQAPAPSKSARMRDWEA 606 Query: 594 EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 I A GG + + LG+ R T++R++++ G++ + R Sbjct: 607 GLIRQALARHGGNVSHAARELGVSRNTIYRRLRE-GLEGDEEAER 650 >UniRef50_A1AMU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Pelobacter propionicus DSM 2379 RepID=A1AMU4_PELPD Length = 666 Score = 656 bits (1693), Expect = 0.0, Method: Composition-based stats. Identities = 133/644 (20%), Positives = 253/644 (39%), Gaps = 40/644 (6%) Query: 13 SPLIATSWERCNK-LMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 +P+I +SW+RC + P G + L + ++ ++ +E +A Sbjct: 31 APVIHSSWKRCFNDYSIDPSSKSKPRIITGSALKECQEPLEEFLFIAKSGMKSLYEKIAT 90 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D + G+P T ++ G G+ AE + GTC + + + Sbjct: 91 AGYVILLGDANGVTIDYMGNPDTEKEHRDAGLYLGSLWAESVEGTCGVGTCIEEKRPITI 150 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI----AREVG 186 D+HF+ + TPLF G L G + ++ + L L + AR + Sbjct: 151 HRDEHFRARHIGLSCSTTPLFFPDGTLLGVLDISQLHPPQSRDSQLLALQMLSYSARLIE 210 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQG 245 N + + A +E + + ++ +G + N A L + G Sbjct: 211 NAYFMRLYKDCWIVRFSCMKAFVEVVAESFLAVSNEGYVIAANQSALTQLQGPQLPSPIG 270 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R ++ + L +++ ++ A T + + P Sbjct: 271 RHVSAVFDL--RMEELVEHATHKTTTILPIRFLDTGYQYFATFRAPEKKS---------P 319 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + ++ S+ T ++ DP+ ++ ++ + +LL GE G GK + + Sbjct: 320 LSPPKKETRSKPSP-HFTLDYLAGTDPRMAYNVNCAKRLMNRNISILLIGETGTGKEVFA 378 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLF 421 +AIH S+RA+ P++A+NC ++ + E G T G ++ + GGTLF Sbjct: 379 RAIHEASDRASKPFVALNCASIPESLIESELFGYKQGAFTGANSKGMRGKILQSSGGTLF 438 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + LQ+ LL+V+ + + L + +I +D+ +I T +L LV + +F L Sbjct: 439 LDEIGDMPFNLQTRLLRVLAEREVQPLGSESVIKVDLNIICATLRNLEELVREKQFREDL 498 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY L+ I +PPLR R ++ N L E + +AL L + WPGN Sbjct: 499 YYRLNGITIKLPPLRERT-DRALVIENALA-AEAEPGVETGLAPEALEILAAYDWPGNIR 556 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF------------- 588 +L + + S+ I DLP L + + Sbjct: 557 QLRNALRFSIAISEGETIHARDLPPDLLKAPTSGIALPAPAPSPEPLPAQDPASLLPDLP 616 Query: 589 --AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+E ++ + I + S L + R+TL+RKM ++ + Sbjct: 617 PQDAQEREKLLRTLKKNKWNITDASRELCVSRSTLYRKMSKYHL 660 >UniRef50_B8FQQ1 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfitobacterium hafniense DCB-2 RepID=B8FQQ1_DESHD Length = 717 Score = 653 bits (1685), Expect = 0.0, Method: Composition-based stats. Identities = 150/681 (22%), Positives = 275/681 (40%), Gaps = 55/681 (8%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAA 60 SGA + ++A SW R N V H + I ++ ++ + + Sbjct: 40 SGADPLACPHLDKMVAESWIRSRLAGVDPYKNAVNHYLHREQYEKIVKKSAFLIEVTKPL 99 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQ---QLSALGFNDGTYCAEGIIGTCA 117 + + + ++D L + L + L F + +E GTCA Sbjct: 100 FDVFKNLIHSSNYEMHLIDTAGNSLLNENSYRYLMNPLEKRDLHFTLSS--SESTTGTCA 157 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP---------VE 168 +LA + V+ +H+ L + + P+F+ + ++L + Sbjct: 158 HALALRHKKPVQLFGPEHYLWELQDIVASSAPVFNENNEVIAALSLIQHLNDSPWAEGYQ 217 Query: 169 QTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQL---------------------NA 207 L L AI + + L + + QL Sbjct: 218 VLCTHTLALITAITKAIEAQLKLHKSYEKLADNNQQLLLANSELSAANQQILTTHDLLRT 277 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 L + +I+ D QGN+ +N A ++L++ + + IT L+ +L + + Sbjct: 278 TLSLTGEAIITIDCQGNILEMNETARKILQIPPDSQENVNITGYLSKNCLLLDWVAEGKD 337 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLH---PVEQMRQLMTSQLGKVSHTF 324 L E F + ++++K ++ + +L S F Sbjct: 338 LTDKEEIFYFGNTPQSYIVSMKVVLGDNKNGGLAVLRFQNARTYNLNATKRAGTNASFHF 397 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + P + + ++ +++S +LL GE G GK LL+Q+IHN+ R GP+IA+NC Sbjct: 398 DDLIGESPSFKGTLSLAKKFSKTSANILLLGESGTGKELLAQSIHND-YRPEGPFIALNC 456 Query: 385 ELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + + E G + T GR ++ELA GTLFL++I + +++Q+ LL+V+ Sbjct: 457 AAIPRSLIESELFGYESGSFTGADRTGRPGKIELADKGTLFLDEIGDMPLDIQAVLLRVL 516 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + + R+ R+ +D +VIA T DL +V++ F +Y+ L I IPPLR R G Sbjct: 517 EDRKVLRIGGRKAKNVDFRVIAATNKDLRRMVQEKTFREDIYFRLSVLTIHIPPLRTRSG 576 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 I L L + + K + ++AL L S +WPGN +L + I SDN I Sbjct: 577 DIEKLCQYFLSNYCRSNGYGKKALSEEALYLLTSYSWPGNIRQLENAIIYGINLSDNSLI 636 Query: 560 RVSDLPEHLFTEQATDDVSATRL----------STSLSFAEVEKEAIINAAQVTGGRIQE 609 LP + + S + E+E AII A + T + + Sbjct: 637 EARHLPTDILGADKVEKPKRPPAMEIPATHEAYGRSSTLQEMELNAIIMALEKTNNSVTK 696 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + +L I ++TL+R++++ + Sbjct: 697 AAKILNISKSTLYRRLRELNM 717 >UniRef50_A0B2I0 GAF modulated sigma54 specific transcriptional regulator, Fis family n=17 Tax=Bacteria RepID=A0B2I0_BURCH Length = 680 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 140/651 (21%), Positives = 245/651 (37%), Gaps = 39/651 (5%) Query: 11 GISPLIATSWERCNKLMKRETWNVPH-QAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 +P I + ER + + + + + + +E E + Sbjct: 19 WPAPSIQKAHERSETFGLQVSARPDYDVLSNAALVLKREQSRVLCVHAMPVMETLHEQIV 78 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D IL GD L++ + G AE GT A+ A + Sbjct: 79 NTQSMIVLTDAEGLILHSIGDDDFLRRAEKVALRPGANWAENRQGTNAIGTALAELCPMV 138 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 DQHF + P+ D G G + + + L + + N L Sbjct: 139 VHGDQHFLAANRFLTCSSVPILDPYGDAIGVLDVTGDHRSYHQHTMALAKMSVQMIENHL 198 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 T + + L ++ +G++++ G N A L + A + ++ Sbjct: 199 FTTTFQETLQVSFHGRPEFLGTLMEGIVAFTADGRFLSANRSAQFQLGMPLAALRAHTLS 258 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 L + + +A +H+ + A + + +G+ + H Sbjct: 259 SLFDVTSAQLIDRMRASTDRHLMLNL-GNGAVVCARVHFRRATLAEGSRPTDV-HDAGAP 316 Query: 310 RQLMTSQLGKVSHT------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + + T ++ D Q +I R+ P+L+ GE G GK L Sbjct: 317 AARANAVPAPAAGTSAGLSRLNYLDTGDAQVASVIAKVRKVIGKDIPILITGETGTGKEL 376 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGT 419 L+QAIHN+S R P++AVNC + + E G + T G + +L A+GGT Sbjct: 377 LAQAIHNDSPRRDAPFVAVNCASIPETLIESELFGYEEGAFTGARRKGAIGKLLQANGGT 436 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + LQ LL+V+++ ++ L + + I +D+ +I T DL ++ QNRF Sbjct: 437 LFLDEIGDMPYPLQVRLLRVLQERLVNPLGSTKTIAVDIAIICATHRDLREMIAQNRFRE 496 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRS--LEKRFSTRLKIDDDALARLVSCAWP 537 LYY L+ + +PPLR R + +V L+ L + D + V C WP Sbjct: 497 DLYYRLNGLVVRLPPLRDRT-DLAVVVQKMLQREAFAGPGRPPLSVAPDVMELFVRCTWP 555 Query: 538 GNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDV------------------- 577 GN +L +++ A D+ IR LP+ F + D Sbjct: 556 GNFRQLGNLLRTAAAMVDDDGEIRREHLPDDFFDDLRRGDAHVGHAGQAAPDSPAAASAG 615 Query: 578 ---SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + +V AI A GG + + LG+ R T++RKM Sbjct: 616 PCVADALPPADARLQDVAASAIAAALARHGGNVSAAARALGVSRNTIYRKM 666 >UniRef50_Q3A7P8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A7P8_PELCD Length = 684 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 152/675 (22%), Positives = 265/675 (39%), Gaps = 46/675 (6%) Query: 1 MSGAFNNDGRGISPLIATSWERCNK-LMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQ 58 +SG N+G+ I I TSWER + + P R + L + + Sbjct: 17 VSGNRGNEGQQIEAPIVTSWERSLQHYGIDPSEPNPVQVLTAAELREYTRPIERFLRIAK 76 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 A ++ +A + + D + GD + +Q G G E GTC + Sbjct: 77 AGVQFLHRQVADLGYSTLLCDAHGVTVDWRGDERFSRQWKDAGLYLGAVWNEHQEGTCGV 136 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA---CPVEQTTAA-D 174 A I A+ HF+ N P+ G+ G I ++ P + + Sbjct: 137 GTALIEQTALTVHKGDHFRAKNANLTCSCAPIIGPSGKTMGLIDVSALHSPDSKESQHLA 196 Query: 175 LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAAR 234 L L + AR + + + + LN L E + +++ D +G + + A R Sbjct: 197 LQLVMQSARMIESAYFLNQYEDQWVLKLNFERELAEVSSECLVAIDGEGRILAADRIACR 256 Query: 235 VLR--LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 L + GR + E+ L + + T + Q + + + I Sbjct: 257 TLGHEVPGGNLVGRFVREVFDLNFEKLLDVYSNSSMVLPIRTQATGLQLFACLRSPQAIS 316 Query: 293 ETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + + PV R+ + L T ++ DD + + + ++ P+L Sbjct: 317 ----VKPVGRVEPVAPPRRQVP--LAGQPLTLDYLAGDDRKLQDSVERIKRVMNKPIPIL 370 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGR 408 L GE G GK + +QAIH+ S RA P++AVNC ++ + E G T G Sbjct: 371 LNGETGTGKEMFAQAIHHASRRADKPFVAVNCAAIPESLIESELFGYKDGAFTGARSKGM 430 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 ++ + GGTLFL++I + LQ LL+V+ + +T L IP+D+ VI T ++ Sbjct: 431 RGKILQSDGGTLFLDEIGDMPASLQPRLLRVLAEREVTPLGGETAIPVDLHVICATHRNI 490 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 +V F LYY L+ +P LR R + L+N+ L + IDD A+ Sbjct: 491 LDMVASGAFREDLYYRLNGIAFELPSLRER-SDLERLINDVLLIEAGNSVESVVIDDAAM 549 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL-- 586 + WPGN +L + + DNG I +DLP + +TD +A+ ++ Sbjct: 550 RVMTDFCWPGNIRQLRNALRYALAVCDNGVITCADLPVDITVTGSTDPAAASLTASRRQP 609 Query: 587 -------------------------SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTL 621 + + E++ I+ A Q ++ + +GI R T+ Sbjct: 610 VAQLPEEPVRPPAASVVDEAVAGLNAMEQAERQVILEALQKYKWQVSKAVKEVGISRATM 669 Query: 622 WRKMKQHGIDAGQFK 636 +RKM ++ I + Sbjct: 670 YRKMDKYAIVPPNKR 684 >UniRef50_Q3JGJ2 Sigma-54 activated regulatory protein n=63 Tax=Burkholderiales RepID=Q3JGJ2_BURP1 Length = 724 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 135/632 (21%), Positives = 247/632 (39%), Gaps = 23/632 (3%) Query: 14 PLIATSWERCNKLMKRETWNVPH-QAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 L+A + R + R + + +++ T + ++ +A + Sbjct: 93 DLLAQAHARSLSVGLRASELPDFSPLSRAALRELIDGSQSLYTHARPVMDTLHTQIADTQ 152 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D IL GD +++ + + G AE GT A+ A I+GQA+ Sbjct: 153 SLVLLTDRDGVILHSIGDADFVEKANRVALCPGVSWAEDARGTNAIGTALIAGQALAVHG 212 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 +HF + P+ D GRL G + ++ + L L A+ + N L + Sbjct: 213 AEHFLRANHVLTCSCAPIVDPFGRLLGALDVSGDPRGFSPHTLALVKMSAQLIENHLFAN 272 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 + + ++S+ G++++ G L N A L + A Q R EL Sbjct: 273 QCADALRVRFHAHDEFVDSLFAGLVAFSPSGALIAANRSAQFQLGANLDALQQRGCDELF 332 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 L PL T + + Q T+ + Sbjct: 333 GLSFAKLAQHAAREPLACFTLTLGTGVRVRA----RCEFAHAQRTAVAVSGRAAPPRATD 388 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + TFA + D + ++ + PVL+ GE G GK L++A+H+ S Sbjct: 389 AARDEEPDAITFATLDTGDARMTAVLQRVGKVRGRDLPVLVLGETGTGKEWLARALHHAS 448 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYL 428 R GP++AVNC D+ + E G + T G ++ A GGTLFL++I + Sbjct: 449 PRRDGPFVAVNCAALPDSLIEAELFGYEDGAFTGARKRGSPGKIAQADGGTLFLDEIGDM 508 Query: 429 AVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAF 488 + Q L++V+++ + L R +P+DV+++ T DL ++ F L+Y ++ Sbjct: 509 PLAQQVRLMRVLQERAVMPLGGARAVPVDVRIVCATHRDLRAMIAAGTFREDLFYRINGL 568 Query: 489 EITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIE 548 +T+PPL R + LV L L + + LA C WPGN ++ +V+ Sbjct: 569 AVTLPPLAER-SDLETLVARVLARLARSEPMPATVSAAVLAAFARCRWPGNLRQMTNVLR 627 Query: 549 NLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLST------------SLSFAEVEKEA 595 + ++ RI V LP+ + + A T + + + + Sbjct: 628 TAGMLAEGEARIDVEHLPDDFWLDCDARARDAAPPRTCADAAAGAAAAGASTLQDHQVAL 687 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 I A G + + LG+ R T++R +++ Sbjct: 688 IDGALDRHRGNVSAAARELGLARNTVYRHLRR 719 >UniRef50_Q1ZGM0 Putative glycerol metabolism operon regulatory protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGM0_9GAMM Length = 647 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 232/636 (36%), Positives = 364/636 (57%), Gaps = 14/636 (2%) Query: 4 AFNNDGRGISPL-----IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQ 58 F R +SP I SW+RC + W+ P+ A G T S R ++ + + Sbjct: 17 KFFQKHRWVSPEFTHSPIHDSWDRCIRQCSAYEWHKPNVASGNTLRSFVHRNNEIVAISE 76 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 LEDA+ + P++CALF+ D T C L+ G ++++Q LGF G + EG +GT A+ Sbjct: 77 TVLEDAYRMLEPKDCALFVTDATGCSLAILGSEKSIEQAKQLGFKLGAFWTEGRVGTNAV 136 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 SL+ + Q + QHF Q L + A P+FD GRL + L +E +D L Sbjct: 137 SLSLHTHQPETVFSAQHFNQNLHGYGCHAAPVFDIDGRLKACLLLFTDMENYQPSDAALI 196 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 + A+EV +L+ ++ L+++N LNQ NA+LE MDDG+I+WD+ + +N QAA +L Sbjct: 197 TSCAKEVSSLVQLENSLSDSNLILNQRNAVLECMDDGIIAWDKDLRITLMNDQAASKFKL 256 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 G + +++ LP V++Q IK L H+E TFE Q +FI+A++TL+P+ Sbjct: 257 KKEHIIGSLLHKIIMLPPVIKQGIKNREKLSHLEITFECQGEFIEALVTLRPL---SNAG 313 Query: 299 FILLLHPVEQMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 F+ +HP+E +R+ + V +F + + +++ ++AA++ P+LL GE+ Sbjct: 314 FLFFIHPLETIRRFAQRNIDNNVELSFDSLVTHSKKMKKVQTIAKRAAKTKNPILLRGED 373 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 GVGK ++QA+H+ S+ + GP+I VNC++ + E +G D G+LS+ ELA+G Sbjct: 374 GVGKNKIAQAMHHLSDNSKGPFIIVNCKVIQAENMVRELLGCDEG---EGKLSKFELANG 430 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GT++LE++E+L+ E+QSALLQ++K + R + R+IP++ ++I +T+ADL V Q F Sbjct: 431 GTIYLEQVEFLSSEVQSALLQMLKNNLFMRTSSNRMIPVNFQLITSTSADLEQYVNQGTF 490 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 R LYYA+ A E+ IP LR R+ I LV+ +L LEKR+ T L I D+AL L+ +WP Sbjct: 491 RRHLYYAISAVELNIPSLRHRQEDIVELVHRQLLRLEKRYKTSLSITDEALQLLLHYSWP 550 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL + IE + L+ I + D P L E ++SA S +EK+AI Sbjct: 551 GNLSELQNKIEKIVLNRSGDLITIDDFPSQLLEEPIKGELSAK--GYIQSLEAIEKQAIQ 608 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 A GR+ E++ L IGRTTLWRK+K++ I Sbjct: 609 QAWDHFDGRVNEIATALQIGRTTLWRKLKKYQISPK 644 >UniRef50_Q1K2I9 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K2I9_DESAC Length = 717 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 148/675 (21%), Positives = 272/675 (40%), Gaps = 48/675 (7%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 A +D + +A SW R K+ V + + + ++ + ++ Sbjct: 46 ADPSDYPCMDKDVAASWMRSRKMGVNPH-KVVTIPNEDQLTKLREQHQQLIEITSEQVKP 104 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 E M ++ D++ IL G ++ G G E GT A L Sbjct: 105 CKEQMVACGYMFYLFDKSGMILCHEG-VWADDKVGECGSRIGILADEESEGTTAHGLCFH 163 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACP----------VEQTTAA 173 + V+ + +++ L N A P+ G + I + P + Sbjct: 164 LKRPVQLIGPENYCVPLQNRIASAAPIMGEDGEVKAAIVVLSPPLVEDLEDDKINHLYMH 223 Query: 174 DLPLTLAIAREVGNLLLTDSLLAETNRHLN---------------------QLNALLESM 212 L L ++A + + + + L L A + Sbjct: 224 TLGLISSLATSIETKIKLVNHTECLEKSLEDATKLNEELKKAKDNMASAHESLTASFAFI 283 Query: 213 DDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVE 272 D+G+I+ D +G ++ IN +A R+ R R + E L+ + + + E Sbjct: 284 DEGMIAVDNKGKIRQINNEAMRIFRAHPEEIGNRNLNEFLSAESSIMHRANKGESFTVDE 343 Query: 273 ATFESQHQFIDAVITLKPIIE---TQGTSFILLLHPVEQMRQLMTSQLGK-VSHTFAHMP 328 ++ I+++PI+ + IL L E++ +++ G+ ++ + Sbjct: 344 CVKVGTNKARPYRISVRPILNQYTKKLDVVILKLISCEKLNNAQSNRSGRSATYQIEDIL 403 Query: 329 QDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYG 388 + + I + A S +LL GE G GK L + +IHN R GP++AVNC Sbjct: 404 GESVAIKSTIAQASRFAASPENILLIGESGTGKELFAHSIHNI-YRPNGPFMAVNCAALP 462 Query: 389 DAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGV 444 + E G + T E G+ ++ELA GGTLFL++I + +E Q+ LL+ ++ Sbjct: 463 RELVGSELFGYEGGSFTGAERCGKPGKIELADGGTLFLDEIGDMPLEHQAILLRSLQDKR 522 Query: 445 ITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPA 504 + R+ R +D +++A T DL +VE+ F LYY + I IPPLR R I Sbjct: 523 VMRIGGNRYKEVDFRLVAATNKDLQQMVEEKTFREDLYYRISVLGIFIPPLRERGKDISL 582 Query: 505 LVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD 563 L +R+ +R ++ +A + WPGN +L + I + ++++ I S+ Sbjct: 583 LSRLFIRNYCQRMGWQEPQLSPEAEKVINQYKWPGNVRQLQNAIHHAINTANDNVIEPSN 642 Query: 564 LPEHLFTEQATDDVSATRL-----STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGR 618 LP ++ + + + +L +EKEAI A I + ++G+ R Sbjct: 643 LPGYVLDDTTSPSSTGLPRFAGAGDHNLCIKTIEKEAIEAALLRANNCIPTAAEIVGLSR 702 Query: 619 TTLWRKMKQHGIDAG 633 +TL+RK+K + I Sbjct: 703 STLYRKLKDYNISVN 717 >UniRef50_A8I2P3 Transcriptional regulator n=6 Tax=Proteobacteria RepID=A8I2P3_AZOC5 Length = 659 Score = 642 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 149/648 (22%), Positives = 256/648 (39%), Gaps = 36/648 (5%) Query: 9 GRGISPLIATSWERCNKLMKRETW--NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 G +I SW RC + P L + +E + Sbjct: 20 GTRRDSIIEESWRRCVNQHNLDPVVLRDPCILPHQRLREHQEAMDEFLHTARFGVETLYR 79 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 +A L + D + GDP L G G E GTCA+ +G+ Sbjct: 80 EVAGLGYVLLLTDAKGVTVDFIGDPTFDNNLMRAGLYLGADWNEPHAGTCAVGTCIATGE 139 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA---CPVEQTTAA-DLPLTLAIA 182 A+ HF A P++D++G L + ++ P + + L L + A Sbjct: 140 ALVVHQTDHFDATHIPLTCTAAPIYDARGSLAAVLDISALRSPEPKESQHLALQLVKSFA 199 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL------ 236 R++ + L + E L + VI+ D G + N +A R+L Sbjct: 200 RKIESAHLLNRFRREWILKLAPSPEFADVDPAYVIAVDGAGRIIGFNNEARRLLIRELER 259 Query: 237 ---RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 LD GR +++ L + A P+ F + P+ Sbjct: 260 QPAGLDTRTIAGRQLSDFFELEVDDLPRLGHARPVTQRMVRFR---------ASGLPLFA 310 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 L P + + + + DDP +++ + + +L+ Sbjct: 311 QS------LAPPARVSAPAVPAAPPDLPKPLQAVFHDDPAMAQVVGRAAKLVNTQMSLLI 364 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRL 409 CGE G GK L++AIH S RAA P++ VNC + + E G + T G+ Sbjct: 365 CGETGTGKEHLAKAIHAASGRAAKPFVPVNCAALPETLIEGELFGYEAGAFTGAAAKGKR 424 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 + A GGTLFL++I + + Q+ LL+V+ + +T L R IP++++VIA T DL Sbjct: 425 GLVSEADGGTLFLDEIGDMPLSSQTRLLRVLAEREVTPLGRSRPIPVNIRVIAATHRDLV 484 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 V+ RF LY+ L+ +T+PPLR R L + L + S R+++ DA Sbjct: 485 TEVKGGRFREDLYFRLNGAILTLPPLRHRT-DFDWLADRILAERCRSLSRRIELSADARE 543 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 L + +WPGN EL + ++ + I DLP+ + D++ + + A Sbjct: 544 ALHAHSWPGNMRELLNALDYALAVACGPLIGREDLPDGIRAGWQGRDLAPAHIMQGVDVA 603 Query: 590 E-VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 E+ ++ + I ++ LG+ RTT+ R+M++ I + + + Sbjct: 604 ASSERTRLLADLRRHDWNISAVARALGVDRTTIHRRMRRLQIASLRER 651 >UniRef50_C4KAI6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Betaproteobacteria RepID=C4KAI6_THASP Length = 699 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 141/671 (21%), Positives = 257/671 (38%), Gaps = 49/671 (7%) Query: 3 GAFNNDGR----GISPLIATSWERCNKLM-KRETWNVPHQAQGVTFASIYRRKKAMLTLG 57 G F +GR G+SPLI SW RC + + A + A + +L Sbjct: 23 GQFFGEGRAPEAGVSPLIVDSWLRCRERGMAADDRAEAEHAGRLQLAEAREGNRGLLDYA 82 Query: 58 QAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCA 117 +E +E + + + D IL GD + + + S + G +E GT A Sbjct: 83 SGVMEHVFEQIRASGSLVILSDPQGMILHSLGDAEFVDRASRVALQPGACWSEAARGTNA 142 Query: 118 LSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPL 177 + A ++ + +H+ + A P+ D +G L G + ++C L L Sbjct: 143 IGTAIVTEAPTVVLGGEHYLDRNGFLSCTAAPIRDPRGALAGVLDVSCEQRMHQRHSLGL 202 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 + + L ++ + S+ +G+++ +G+L N+ A + Sbjct: 203 VRLSVQLIEKRLFEAEFANHILVAFHERPEYVGSLQEGLVAVTPEGHLAGANSIAREWIG 262 Query: 238 LDATASQGRAITELLTL-------------PAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 G + EL A+++ ++ + + + + Sbjct: 263 RRVECGGGASFAELFRQGLGKVVDRAMNSSDALIRLGLRDGSEIHVQLRSLRPRFTAFGS 322 Query: 285 VITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 + + S + + T + D R + R+ Sbjct: 323 AQAGEGMRTFAAESSPAAVGSAPPVSAPAPVSAPHGPITLHDLATGDAGIGRAVDRARRI 382 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DR 401 P+L+ GE GVGK L +QA HN RA ++A+NC + + E G Sbjct: 383 LGKDIPLLIQGESGVGKELFAQAFHNSGPRADKTFVALNCAAVPETLIESELFGYVGGAF 442 Query: 402 TDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKV 460 T G L +++ A+GGTLFL++I + + +Q+ LL+V+++ +T + + + IP+D+ + Sbjct: 443 TGARKEGALGKIQQANGGTLFLDEIGDMPLGMQARLLRVLQERCVTPVGSVKSIPVDISL 502 Query: 461 IATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR 520 + T L V + F LYY +++ +T+P LR R I +V L + + + Sbjct: 503 VCATHRVLRDAVARGEFREDLYYRVNSLTVTLPALRER-SDIRCIVERILAAECREAGLQ 561 Query: 521 -LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG--RIRVSDLPEHLFTEQATDDV 577 + I D+ + + WPGN +L +VI D G IR LPE LF D Sbjct: 562 GVWIGDEVMRFVERHGWPGNVRQLQNVIRVAVALLDEGEREIRPEHLPEDLFLADPVDGG 621 Query: 578 SATR-----------------------LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 +S + ++E E I + GG + + L Sbjct: 622 KTPPAAHAGPLVAAASAALPLAADAPPISAAKRLDQLEIELIERVMREVGGNLSAAARTL 681 Query: 615 GIGRTTLWRKM 625 G+ R L+RK+ Sbjct: 682 GVSRNRLYRKL 692 >UniRef50_A1TS58 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Acidovorax RepID=A1TS58_ACIAC Length = 699 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 146/669 (21%), Positives = 264/669 (39%), Gaps = 59/669 (8%) Query: 15 LIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 +IA S ER + A R A+ +E +A + Sbjct: 24 VIAESHERSRSFGLHRHASADLQPLAPDALAWAVARNDALCAHALPVMETLSAQIAGTQS 83 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D +L GD + L + + G +E GT A+ A G AV+ D Sbjct: 84 MVLLTDAQGVVLHALGDEEFLGRAQRVALRPGGTWSERSKGTNAIGTALALGDAVQVNGD 143 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF P+ D G++ G + ++ Q +A L L AR V N L Sbjct: 144 EHFLAANQFLTCSCAPICDPLGQVIGALDVSGDRHQQSAHTLALVRMSARMVENHLFGKV 203 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + L ++ +G+ ++ +G N L + A A Q + L Sbjct: 204 YEDAVRLRFHARPEFLGTLVEGLAAFTPEGRFLAANRSGQFQLGMSANALQAQTFPSLFG 263 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP-------------IIETQGTSFI 300 +P A + + ++ ++A++ +P +T + Sbjct: 264 MPMSALLAHARGAMPRPLQLALPG-GVVVNAMVEFRPKGAAALGWTGQGSDEDTPVPGPV 322 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAH---MPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + + + + + D Q ++I + S P+L+ GE Sbjct: 323 APASATARAARRPIAPVPAGGPRLSGLRYLDTGDAQLAQVIDRVSRVLGSDVPMLILGET 382 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLE 413 G GK LL++AIH + RA GP++AVNC + + E G + T G + ++ Sbjct: 383 GTGKELLARAIHQDGPRARGPFVAVNCASIPETLIEAELFGYEEGAFTGARRRGSVGKIA 442 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 AHGGTLFL++I + + +Q+ LL+V+++ + L + R IP+DV V+ T +L ++ Sbjct: 443 QAHGGTLFLDEIGDMPLAMQARLLRVLQERTVAPLGSARQIPVDVHVLCATHRNLRDMMV 502 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-------------- 519 + F LYY L+ + +P LR R + +V L++ ++ + Sbjct: 503 RGLFRDDLYYRLNGLVVRLPALRER-SDLRVIVQRLLQAQDREQAAEGSTPGWQRPRRTV 561 Query: 520 RLKIDDDALARLVSCAWPGNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDDVS 578 L++ A+ + WPGN +L + + AL + D I + LPE LF E Sbjct: 562 PLQVASRAMDLFLRHRWPGNLRQLSNALRTAALMAGDADEIDIGHLPEDLFDEGLPTAGD 621 Query: 579 ATR---------------------LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 A + S+ E ++A+ +A V GG + ++ LG+ Sbjct: 622 AVPGASARDAEPSPSVRSAAHRPAPAAVRSWDETVEDALRHALSVHGGNVSAVARALGVS 681 Query: 618 RTTLWRKMK 626 R T++R++K Sbjct: 682 RNTVYRRLK 690 >UniRef50_B2IEK7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Beijerinckiaceae RepID=B2IEK7_BEII9 Length = 689 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 158/659 (23%), Positives = 255/659 (38%), Gaps = 42/659 (6%) Query: 8 DGRGISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 + + ++A SW+RC+ + + V F R K +L LE+A Sbjct: 41 EEPQVRDIVANSWKRCSAIGIDPQRPGSCAILETVEFERRLRGSKVLLNAASDILEEANT 100 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 L + D IL GD +T+ + G +E GT + S + Sbjct: 101 LFEGTGSMLLLTDVDGVILRAIGDTKTIDAGHDINLVVGADWSENKAGTNGIGTTLASHR 160 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 V +HF + NW +P+ G + G + ++ L + +AR + Sbjct: 161 PVLIYGPEHFCSLTKNWTCVGSPVRHPLSGEILGLVDMSGRKCTFQQQHLAFAVMVARRI 220 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 +L + S DGV+ D G + + QA R+L L AT G Sbjct: 221 ETVLTVHFEIERRKLLEYSAQMTRGSWSDGVVIVDRFGKVLSTDEQAPRLLALRATH--G 278 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 ++ L L + + + P+ +++ P Sbjct: 279 ERLSASLNAERPLLRPKGDGRSFDLSVSAEYGIDAD-----NVMPVHHQGELIGAVIIAP 333 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + K S F + I R+ A PVL+ GE GVGK L + Sbjct: 334 RT---APAVATALKQSRAFDPIVTGCATVLDTIQRARRLAAYQAPVLIEGETGVGKELFA 390 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLF 421 +AIH+ S A+GP++A NC +A E G T G + R E A+ GTL Sbjct: 391 RAIHDASPCASGPFVAFNCGAVSRDLIATELFGYVKGAFTGAATTGNIGRFERANHGTLC 450 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I L ++LQ LL+V+++G + R+ P+ V++IA T DL VE+ RF R L Sbjct: 451 LDEIGELPLDLQPFLLRVLEEGTVYRVGDATPHPVKVRLIAMTNRDLREEVEKGRFRRDL 510 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGND 540 Y L+ + +PPLR R+G L + L L K+ L + D L + WPGN Sbjct: 511 LYRLNVSTLRVPPLRKRQGDAVLLAQHFLDQLSKKHGFGLRRFAPDVLDLFKTYGWPGNI 570 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTE-------------------------QATD 575 EL + +E+ L D I LP+ + + +AT Sbjct: 571 RELRNAVESALLLCDTPVIGRGWLPDAILEDHAAQAAPAQPVATQPIFMPPGPMAYEATG 630 Query: 576 DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 ++K I++ + I + LGI R+TL+R+M+ +GID + Sbjct: 631 YPPGIATPRGSDLRAMDKAHILSVLERYQWNISLSAGALGIARSTLYRRMQAYGIDMHR 689 >UniRef50_A1K4T7 Sigma-54 dependent transcriptional regulator n=4 Tax=Betaproteobacteria RepID=A1K4T7_AZOSB Length = 686 Score = 639 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 160/639 (25%), Positives = 269/639 (42%), Gaps = 38/639 (5%) Query: 9 GRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 I + SW R P A+G + RR + ++ + Sbjct: 52 PSTIESPVLDSWRRSRDAGVNPVGRAAPVAARGDDMELLRRRHRELMAAASNLFAHTGDL 111 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 +A + + +L GD TL + G E ++GT + A + Sbjct: 112 LAGSHSIMLLTSPEGVVLDAAGDAATLDAARDIHLMTGGNWCEAVVGTNGIGTAIATRCP 171 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 + +HF + + W A P+F+ + G + ++ P + +L L +++AR++ Sbjct: 172 AQIHGAEHFCEGIQGWTCAAAPIFEPGTQDILGVLDISGPPQTFQRNNLLLAVSVARQIE 231 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 L +L + +N L + G+++ D QG L A R Sbjct: 232 MALSHSALGERLRLLEHCMNRLSLADAAGMVAIDRQGRLIH---SAGR------------ 276 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 + LP + + + P +E + + L P++ T ++L P Sbjct: 277 -----VPLPVGVGERLPGFRPHADLEEWAAHLPEGLR-PEWLHPVVAGGRTVGAVVLVPG 330 Query: 307 EQMRQ-------LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 +R +S+ F ++ P R GR+ A PVL+ GE GV Sbjct: 331 RGVRNSPVARLAEQSSEADPRRSCFDNILGRSPAMREATDLGRRLATKRVPVLVEGETGV 390 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELA 415 GK L ++A+H E GP+I NC +A + G T N GR R ELA Sbjct: 391 GKELFARALH-GGEHLGGPFITYNCGAASKELIAADLFGHVRGAFTGATNDGRPGRFELA 449 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 +GGTL L++I + ++LQ LL+ +++G++ RL + +DV++IA T +L V Sbjct: 450 NGGTLCLDEIGEMPLDLQPVLLRALEEGIVYRLGDTQPRRVDVRLIAMTNRNLREEVAAG 509 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSC 534 RF R LYY + + IPPLR R G IP L ++ L +R + + L L + Sbjct: 510 RFRRDLYYRIGVTRLRIPPLRERDGDIPLLASHFCTQLAERHGVPRREFGPEVLDALQAY 569 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT--EQATDDVSATRLSTSLSFAEVE 592 WPGN EL +V+E+L L ++RV +LPE + QA + S E Sbjct: 570 CWPGNVRELRNVVESLLLMDSTPQVRVDELPEEILASVPQAARPAAEGAEPECPSLEAAE 629 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + AI A G + + + LLGI R+TL+RK++++ ++ Sbjct: 630 RRAIQKAVINFQGNLAQAARLLGISRSTLYRKVERYALE 668 >UniRef50_C0QGL0 Sigma-54 dependent signal transduction protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QGL0_DESAH Length = 662 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 156/640 (24%), Positives = 260/640 (40%), Gaps = 20/640 (3%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 + D + I I SW+ L + H+ G +R ++++ Q Sbjct: 16 LQAGKPVDSQSIRTDILVSWKHSKNLGIDAHKGLHHKGDGDAL---LKRSAELVSVAQPF 72 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 +E E +A + +D L GDP L++ GF G + IGT A L Sbjct: 73 MEVINEIIAGSGFRIDCIDHEGFFLCSCGDPTLLKESEYNGFVTGCDVSIEAIGTNAAGL 132 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 + + V+ +H+ L N ATP++ L G + + L LT + Sbjct: 133 SLSLKKPVQVFGPEHYNINLHNLNCSATPIYTPDSELVGILNILSYDTPQNRQTLGLTTS 192 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 IA+ + N L + ++LN ++E + GVI+ ++ G + N +A +L + Sbjct: 193 IAKAIENQLALTRTVTSLKVSNSELNTIMEYLPQGVIALNKLGEVDRYNKKALEMLSIPQ 252 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 + + +L ++ K E T + V+ I + T + Sbjct: 253 KSGIDQRKNQL-KKNLSALDLSRELRRQKEKEHTIAVGSRKKSFVVNAHSIENGERT--L 309 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 ++L ++ L Q + S+TF + + A + VLL GE G G Sbjct: 310 VMLEDTGRIMSLSAVQSNRTSYTFNDITGRCAGIIKAKELATMVAPTDSSVLLVGESGTG 369 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAH 416 K L +QAIH S R+ P++A+NC + E G + T G+ RLE A Sbjct: 370 KELFAQAIHASSCRSNNPFVAINCGAIPADIIESELFGYEPGAFTGAREAGKAGRLETAS 429 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL+++E + + Q LL+ + R+ IP+D+++I+ + DL Q R Sbjct: 430 GGTLFLDEVEAMPLSFQVKLLRAFSSKSMVRVGGVNEIPLDLRIISASKVDLIEEANQGR 489 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCA 535 F LYY + F I IPPL R G I L L+ L + + + D+D L S Sbjct: 490 FREDLYYRIATFPILIPPLNKRGGDIRLLAKQFLKQLSAEYLRSDIYADNDFFEALQSYP 549 Query: 536 WPGNDFELYSVIENLALS-SDNGRIRVSDLPEHLFT--------EQATDDVSATRLSTSL 586 W GN EL + IE + D ++ + LP+ L + A ++ Sbjct: 550 WRGNVRELRNTIERAVVIGLDQQQLTPAQLPQSLKEYWISGKLRQHAKTTLNHHPTDKKS 609 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E I + G I + LGI R+TL++K++ Sbjct: 610 LLKIAEDTTIAMVLEEEKGNISRSAKRLGIARSTLYQKIE 649 >UniRef50_C9YDA0 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YDA0_9BURK Length = 664 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 141/654 (21%), Positives = 252/654 (38%), Gaps = 44/654 (6%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAA 60 +G + +A SW R T V P A + A+L + Sbjct: 20 TGQCPE--GVVDARLARSWHRSVAAGLAPTARVAPEHASSHHLRHVLASNHALLAHSRPV 77 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 +E ++ + + + + D ++ GDP + + + G AE GT A+ Sbjct: 78 MEYVFDQVRQSQSVVVLADSAGMLMHTLGDPYFVDKAERVALTSGASWAEAHRGTNAIGT 137 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 A AV+ +HF + A+P+ + G LTG + ++ A L L Sbjct: 138 ALAERSAVEIHGSEHFLERNGFLTCAASPILSATGELTGILDISGDHRNGHAHTLGLVST 197 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 AR + N L+ + HL+ + S+ +G+I+ + G + N +LRL+A Sbjct: 198 AARMIENRLMVATCKRNIRLHLHVQPEGIGSVAEGIIALSDDGWIVGANRVGLALLRLNA 257 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQH---QFIDAVITLKPIIETQGT 297 + +L + + + P + + + + +T+ P I Sbjct: 258 GDIGATTMERVLDVRLDDLLSRHKRRPQQPQQLRLHNGAVLFAQVQVDVTVLPGISQSNA 317 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + D + R R+ P+L+ GE Sbjct: 318 VRVANAFAGSPAAGADALAALD---------TGDARWRSAADKARRVVGKPIPLLIQGES 368 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLE 413 GVGK + ++A+H R GP++A+NC ++ + E G T G RL Sbjct: 369 GVGKEMFARALHASGPRRDGPFVAINCGAIPESLIESELFGYVAGAFTGARKEGSPGRLR 428 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 AHGG+LFL++I + + +Q+ LL+V+++ +T + A + + +D +I+ T LA E Sbjct: 429 EAHGGSLFLDEIGDMPLPMQTRLLRVLQERTVTPVGAGKSVAVDFALISATHCKLAEASE 488 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 + F + LYY ++ +T+P LR R + AL L L +++ D + RL S Sbjct: 489 KGAFRQDLYYRINGLTVTLPSLRER-SDMAALTERLLADLSP--DVPVQVAPDLMQRLTS 545 Query: 534 CAWPGNDFELYSVIENLALSSDN--GRIRVSDLPEHLFT--------------------E 571 WPGN + SV+ + + + +P+ L Sbjct: 546 YPWPGNLRQYASVLRTACAMLQDGEDTLDWTHMPDDLLDALQAPSLAERIVDTQSAQTPA 605 Query: 572 QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 D + S + + AI A + T G + + LGI R TL+RK+ Sbjct: 606 PYAPDAQPAAVQAPQSLQALSQAAIQQALEATRGNVSLAARQLGISRQTLYRKL 659 >UniRef50_A7MAQ9 BmoR n=1 Tax=Thauera butanivorans RepID=A7MAQ9_9RHOO Length = 669 Score = 637 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 133/642 (20%), Positives = 239/642 (37%), Gaps = 38/642 (5%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWE 66 ++ ++ SW RC K+A++ + ++ E Sbjct: 27 QPGKVADVVLRSWTRCRAEGVVPNARQEFDPIPRTALDETVEAKRALILAAEPVVDALME 86 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 M + + DE +L G+ L+ G E GT A+ A + Sbjct: 87 QMNDAPRMIILNDERGVVLLNQGNDTLLEDARRRAVRVGVCWDEHARGTNAMGTALAERR 146 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 V +H+ + + A P++D G TG + ++ +P + + Sbjct: 147 PVAIHGAEHYLESNTIFTCTAAPIYDPFGEFTGILDISGYAGDMGPVPIPFVQMAVQFIE 206 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L + H + + +M +G+ +G + +N ++ L+ A Sbjct: 207 NQLFRQTFADCILLHFHVRPDFVGTMREGIAVLSREGTIVSMNRAGLKIAGLNLEAVADH 266 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 + L + V + Q V + Sbjct: 267 RFDSVFDLNFGAFLDHVRQSAFGLVRVSLYGGVQVYARVEPGLRVPPRPAA--------- 317 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + D R I R+A + +L+ GE G GK + ++ Sbjct: 318 ------HARPPRPAPRPLDSLDTGDAAVRLAIDRARRAIGRNLSILIQGETGAGKEVFAK 371 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RT-DNENGRLSRLELAHGGTLFL 422 +H ES R+ GP++AVNC + + E G + T G + ++ AHGGTLFL Sbjct: 372 HLHAESPRSKGPFVAVNCAAIPEGLIESELFGYEEGAFTGGRRKGNIGKVAQAHGGTLFL 431 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I +A LQ+ LL+V++ + L R +P+D+ ++ T +L L+ Q +F LY Sbjct: 432 DEIGDMAPGLQTRLLRVLQDRAVMPLGGREPMPVDIALVCATHRNLRSLIAQGQFREDLY 491 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y L+ I++PPLR R + ALVN+ L + + + AWPGN + Sbjct: 492 YRLNGLAISLPPLRQR-SDLAALVNHILFQCCG-GEPHYSVSPEVMTLFKRHAWPGNLRQ 549 Query: 543 LYSVIENLALSSDNG-RIRVSDLPEHLFTEQATD---------------DVSATRLSTSL 586 L++V++ D+G I LPE E + A+ + Sbjct: 550 LHNVLDAALAMLDDGHVIEPHHLPEDFVMEVDSGLRPIEEDGSTAAHRARQPASGSGPAK 609 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++ +AI A + G I + LG+ RTT++RK++Q Sbjct: 610 KLQDLALDAIEQAIEQNEGNISVAARQLGVSRTTIYRKLRQL 651 >UniRef50_P28614 Acetoin catabolism regulatory protein n=4 Tax=Proteobacteria RepID=ACOR_RALEH Length = 668 Score = 636 bits (1641), Expect = 0.0, Method: Composition-based stats. Identities = 144/647 (22%), Positives = 255/647 (39%), Gaps = 40/647 (6%) Query: 13 SPLIATSWERC-NKLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 +I SW RC ++ + R + + L+ + +A Sbjct: 32 DAIIQNSWRRCVHQYGLDPSRMQEARILPQPRLREHQERIDDFARIARHGLQSLYGQVAG 91 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D + G+ ++ L G G +E GTCA+ A +GQA+ Sbjct: 92 LGYVVLLTDAQGVTVDYIGEARSDAALRHAGLYLGAEWSESGAGTCAVGTALATGQALTV 151 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR----EVG 186 HF A PLFD+ G L + ++ L L + R + Sbjct: 152 HQADHFDATHIPLTCTAAPLFDTHGNLHAILDISALTSPQAKDSQGLALQMVRIYAAHIE 211 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-----RLDAT 241 N + + LN ++ + +++ DE G + N +A +L Sbjct: 212 NANFLRAHRRDWILKLNVAPEFVDVNPEYLLALDEAGRIVGHNHRARLMLEGELGGAPGA 271 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 G+ L + L H + S+ + + + + G ++ Sbjct: 272 TVLGQRFETLFD---------ARLEDLGHYVYSRPSEQRLVA-------LTRSGGLLYLS 315 Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 +L P + + + A + D + + + S +L+ GE G GK Sbjct: 316 VLPPALRWQAPPAETQVAMPDALAALTGGDAALQLQLQRAARLVDSPINLLIHGETGSGK 375 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHG 417 L++A+H S R GP++AVNC + + E G + G+ ++ A G Sbjct: 376 EFLAKALHLASARRGGPFVAVNCAAIPETLIESELFGHLPNSFSGAGPRGKRGLIQEADG 435 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + ELQS LL+V+ +G + + A R +P+ ++VI+ T L LV RF Sbjct: 436 GTLFLDEIGDMPRELQSRLLRVLAEGEVLPVGAARPVPVRLRVISATHHSLEQLVADGRF 495 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LYY L+ T+PPLR R + LV L+ + + + A RL WP Sbjct: 496 REDLYYRLNGARFTLPPLRART-DLDWLVRKLLQEGSAE-GSEITLSPAARERLHRHRWP 553 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV------ 591 GN EL +V+E +G I V DLP+ L + + + S + A Sbjct: 554 GNLRELRNVLEYARAVCADGYIDVPDLPDSLAGPAPSAALPQPGPAQSPAAAPFDPHQLP 613 Query: 592 -EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 E ++ + +G + ++ +G+ R TL+R+M+++GI + + Sbjct: 614 PEGMLLMQYLRASGWNLSAVARQIGVSRMTLYRRMERYGIQSPNRRD 660 >UniRef50_Q2RVW2 Sigma54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains n=7 Tax=Proteobacteria RepID=Q2RVW2_RHORT Length = 653 Score = 635 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 143/635 (22%), Positives = 240/635 (37%), Gaps = 28/635 (4%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPH--QAQGVTFASIYRRKKAMLTLGQ 58 + G I+P +A SWER + A R++ +L + Sbjct: 19 LEGGSLPPAGLIAPTVAHSWERSLRAGLLPFSPPAVADHLAARHLAQAVERRRELLMRAR 78 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 ++ + + + D+ ++ GD +++ + G E GT A+ Sbjct: 79 PVMDYLHAQTKGSDSVVILADDNGVLIEALGDAAFVERAERVALKPGASWHERHRGTNAI 138 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 A + Q V +HF + A P+ GR+ G + ++ P L Sbjct: 139 GTALVEAQPVAVHGGEHFFEHNRFLTCAAAPIAGPDGRVLGVLDISGPQRGRHPHTFGLV 198 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 A + N L E + + ++ +G+++ E+G + N A L + Sbjct: 199 RAATHMIENKLFEARHEGEYRIRFHPQADGIGTLAEGMVALSEEGLVIGANRAALAFLAI 258 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 + G+A+ E L LP + + H + ++P Sbjct: 259 TPSD-IGKALIEAL-LPLRMADILDHGHRHPGTTLGLACPGGG-RFSLRVEP-------G 308 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + ++ P +V A + DP I R+ P+LL GE G Sbjct: 309 WRAVVRPA------AMPAPDRVQDALADLDTGDPTMAGAIERVRKILGKPIPLLLQGESG 362 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLEL 414 VGK + + A+H R P++AVNC + + E G T G R+ Sbjct: 363 VGKEVFATALHATGPRRGRPFVAVNCAALPEHLIEAELFGYAPGAFTGARREGSAGRIRE 422 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTLFL++I + + LQ LL+V++ + L + + +D +IA + L E Sbjct: 423 AEGGTLFLDEIGDMPLALQCRLLRVLQDRQVVPLGGGKAVSVDFALIAASHRPLKAEAEA 482 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSC 534 RF LYY L+ + +PPLR RR ALV + ++ + +D D L Sbjct: 483 GRFRADLYYRLNGLTLCLPPLRARR-DFAALVARMIETM--EPGAGIGLDPDVADALAGH 539 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRV--SDLPEHLFTE-QATDDVSATRLSTSLSFAEV 591 WPGN +L +V+ D G IR+ LPE L E + V + + Sbjct: 540 GWPGNLRQLANVLRFACALRDPGEIRLGWHHLPEDLIEELRCPSGVDTDAGAGPATLRAA 599 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 I +GG + E + LGI R TL+R+M Sbjct: 600 SDSLIERMVAASGGNLSEAARRLGISRNTLYRRMN 634 >UniRef50_Q1H4H3 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Methylophilaceae RepID=Q1H4H3_METFK Length = 640 Score = 635 bits (1638), Expect = e-180, Method: Composition-based stats. Identities = 146/627 (23%), Positives = 248/627 (39%), Gaps = 29/627 (4%) Query: 12 ISPLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 ++ IA SW+R V + + +LT + + +E +A Sbjct: 34 VNKTIARSWQRSLDNGINAFQPLSTATLDRVELEKKRSKYRLLLTQAKPEISMLYEQIAH 93 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D IL G + + G E GT A+ A + Q V Sbjct: 94 SYSVVALTDAEGVILHSEGQHLLVDLAPREIMSPGYSWCEQERGTNAIGTAIVEQQPVAV 153 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +HF + L N++ A P+F +L GT+ + L L A+++ N + Sbjct: 154 QGAEHFVEQLQNFSCYAVPIFGPNRQLLGTLNVTNAFAAHQQHTLTLVKMTAQQIENRVF 213 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 H + + S +G +G L IN +L + Sbjct: 214 RACYQGPLTLHFHTAADFIGSAWEGCAVLSREGALLAINRNGLELLGKSNPPT---DFQS 270 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 + P L Q +++ + T + A + + P H + + Sbjct: 271 IFLEP--LSQLLEEYRQNANAPLTLTLTNGGPAYATLDVAPDTTAN--------HGIAGI 320 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 R M +DP+ ++ R P+L+ GE GVGK LL+ IH Sbjct: 321 RHAAKPPTAPAM----AMTSEDPRIAEILTQARLVMDQDIPILIQGETGVGKELLATTIH 376 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKI 425 S RA+GP IA+NC + + E G + T G ++E AHGGTLFL++I Sbjct: 377 QNSARASGPLIAINCAALPEGLIEAELFGYEEGAFTGARQKGSQGKIEQAHGGTLFLDEI 436 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ+ LL+V+++ IT L + +D VI+ T L V + F + L+Y L Sbjct: 437 GDMPLLLQARLLRVLQERSITPLGGSKSRKLDFAVISATNQKLQEKVAEGTFRKDLFYRL 496 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + +T+PPLR R+ +PA++ N + ++I +D L WPGN +L++ Sbjct: 497 NGISLTLPPLRERQ-DLPAIIYNIM---SAERGGHVEIHEDVLNLFRRHPWPGNIRQLHN 552 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTE--QATDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 V++ + S G ++ LP E + T T+ S + E + A Q Sbjct: 553 VLKTMLALSGGGPLQRRHLPPGFMDELDNSMTLEQKTPGPTAGSIDAITNEVVKQALQHH 612 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGI 630 G I + LG+ R +R++K G+ Sbjct: 613 EGNISAAARELGMSRNRFYRRLKALGL 639 >UniRef50_Q0A9V6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9V6_ALHEH Length = 642 Score = 632 bits (1632), Expect = e-180, Method: Composition-based stats. Identities = 147/642 (22%), Positives = 255/642 (39%), Gaps = 29/642 (4%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 G+ + SW+R + F + ++ LT + ALE Sbjct: 17 GETPTGVRDEVLASWQRSLDNNVPVDRSQTQALSDGEFLRVRQQSGPFLTAARPALEQGR 76 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 +++ + + + +L GD + ++ +G G EG IGT A+ A S Sbjct: 77 RFLSEARAMVMLSNAHGTVLETVGDRRVIEHGQDIGLCRGGLWDEGHIGTNAIGTALASQ 136 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSK-GRLTGTIALACPVEQTTAADLPLTLAIARE 184 Q V+ +H+ + W A P+F R+ G + L+ P E L +A+AR+ Sbjct: 137 QPVQIHGYEHYCCRVQRWTCAAAPVFSPTTRRILGVVDLSGPAESFNPQSLAYVVAVARQ 196 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + L+ + L V+ G + N Q R + + Sbjct: 197 IEGGLIQATEADHRRLIDRFLGMGRRWKHRDVLVVSRSGVIVHGNEQVRRQISRASRNL- 255 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLL 303 L + L + A + ++P+ ++ + IL Sbjct: 256 ------FFENTIPLLRDTPAEEWLDKLHAQLPT--------ADIEPVTVDGEHLGVILAP 301 Query: 304 HPVEQMRQLMTSQLGKVS---HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + +G+ + + D P R R+ A + P+L+ GE GVG Sbjct: 302 RQGRTGIRPRNRDMGEHPSDGFSLDTLIGDSPAMRAACDKARRLAATDAPILIEGETGVG 361 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAH 416 K L +Q IH S GP+I VNC + E G T + GR +LE A Sbjct: 362 KELFAQGIHALSM-LTGPFIPVNCGALPKDLIGGEMFGYVGGAFTGASQEGRPGKLEAAD 420 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTL L+++ + ++LQ LL++++ GV+ R+ + + + ++++ T +L +E R Sbjct: 421 GGTLCLDEVSEMPLDLQPTLLRILEDGVVYRIGSHQPRRVRARLLSMTNRNLPEEIESGR 480 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCA 535 F + L+Y + A + IPPLR R I L LR R + + +A+ L+ Sbjct: 481 FRQDLFYRIAALRLRIPPLRERGDDIALLAEYYLRQQATRSGRTPQSLSAEAMDALLRYH 540 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 WPGN +L + I A +D I V LPE + +L A VE+ A Sbjct: 541 WPGNVRQLRNAITTTAALTDAATIDVEALPEEIL---TPAPAPTPGEDGNLQLATVERAA 597 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 I A + G + + LGI R+TL+ ++++ I + +R Sbjct: 598 IEQALRRCEGNVSRAARQLGIARSTLYCRIQEQHIPIPRRRR 639 >UniRef50_B2JX43 GAF modulated sigma54 specific transcriptional regulator, Fis family n=8 Tax=Burkholderiales RepID=B2JX43_BURP8 Length = 701 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 135/655 (20%), Positives = 245/655 (37%), Gaps = 44/655 (6%) Query: 16 IATSWERCN-KLMKRETWN-VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 +A SW RC +P + ++ + + ++ +A E Sbjct: 31 VAQSWTRCLVDFGLDPGRFVMPPVLTQQELNTHREAAGDLIACSKLEMTTLYQQLADPEL 90 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 A+ ++D I+ + + ++A G G +E GT + + + Sbjct: 91 AVILVDANGVIVHQVSSVPFGEAVAADGLRVGAVWSEREAGTNGMGTCLTERECLAIYQH 150 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +HF + A P+FD +G + G + + + L L + + N L+ Sbjct: 151 EHFYPRYTSLTCSAAPIFDERGTIVGVLDVTSRSKMLQQHSLVLVGMSRQMIENRLIDSR 210 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRAITELL 252 H + + ++ G ++ D+ G + N A L L G+ I E Sbjct: 211 YRRANTVHFHSRPEFVGTLHAGKLAVDDDGVVLAANRSALFQLDLRSPDQLCGKRIEEAF 270 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL------HPV 306 + A + + + E+ G + L V Sbjct: 271 SATLEDMIARSIRGSFHPITVYSAHANNRFFVIAQTPRDAESFGAASHALPSARGPWSDV 330 Query: 307 EQMRQLMTSQLGKVSHT------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 R + +H+ DP+ + + P++L G+ G G Sbjct: 331 SINRNARAKTPREAKPAAAGLDKLSHLEFGDPRMAAQSQLAARVIQRKIPIILRGQTGTG 390 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAH 416 K + + A+H+ S AAG ++AVNC + + E G T GR ++ A+ Sbjct: 391 KEVFANALHSISPNAAGAFVAVNCASLPETLIESELFGYRAGAFTGAQREGRRGKIVQAN 450 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GTLFL++I + + LQ+ LL+V+++ +T L A I +D ++I+ + +L LV++ Sbjct: 451 NGTLFLDEIGDMPMALQARLLRVLEEHEVTPLGAETTIKVDFQLISASHRNLLDLVQRGL 510 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 F LYY L+ EI +PPL R + LV + L ++ +A L S AW Sbjct: 511 FREDLYYRLNGIEINLPPLCER-ADLLPLVQHILE---SESDDPPELSAEARQALASYAW 566 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR--------------- 581 PGN +L V++ D IR + LP + + + A+ Sbjct: 567 PGNIRQLRHVLQMAIALCDGPEIRCAHLPAEIVDDARGTNPRASSAGQFAQPARAAVAPP 626 Query: 582 ------LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 LS + E+E ++ + ++ LGI R TL+RKM + I Sbjct: 627 FDDDTDLSALNAIQLKERETVLAMLDEHRWNVSNVAKTLGISRNTLYRKMHRLHI 681 >UniRef50_D0D5X9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Citreicella sp. SE45 RepID=D0D5X9_9RHOB Length = 647 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 155/651 (23%), Positives = 254/651 (39%), Gaps = 30/651 (4%) Query: 2 SGAFNN-DGRGISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQA 59 SG + I SW R ++ T + A + + A Sbjct: 9 SGHPAEARSDHVRDDILASWLRSMEMGVDAATLASRKISDEDEIALRRQHNAHLRRAASA 68 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 A +++ + + + D+ I+ GD L + G E +GT + Sbjct: 69 AFRRLEPHLSDAKSIMLLADDQGVIIDAIGDASVLDDGQGIHLEVGGQWNEKTVGTNGIG 128 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLT 178 A +G+ + A +HF + + W P+ + + G + L+ P + ++ L Sbjct: 129 TALKTGKPMYVHAAEHFVEGVQAWTCAGAPIRNPFDNSVIGVVDLSGPPDIFRRHNIALV 188 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 LA ARE+ L T L + D+ V+ D G + F Sbjct: 189 LAAAREIEIALAEQQRQDRTQLLEAFLQSKYSQADNSVLLLDRNGRILFRRGVDETTFPS 248 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 G+ + L L A + + P E +++ Sbjct: 249 SDKLLVGQKL--LPDLEAFNAKDLPTLLPPNVEAQGLERL------------VLDNDYRG 294 Query: 299 FILLLHPVEQMRQ-----LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 L L +R+ VS H+ P+ I +AA+++ VL+ Sbjct: 295 AALFLKCDRSLRRPEIGARRIQPRPNVSEEPIHIVCASPKMLEAIELAERAAQANVSVLI 354 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRL 409 GE GVGK L ++ IH+ R PY+ VNC + + E G T GR Sbjct: 355 QGETGVGKELFARLIHSRLGRPDSPYVPVNCAAISNDLIGAELFGYVDGAFTGAARGGRA 414 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 + E A+GG L L++I + +ELQ LL+ ++Q I R+ + P+DV+++A T DL Sbjct: 415 GKFEQANGGLLCLDEIGDMPIELQPYLLRALEQRAIYRMGDSKRRPVDVRLVAMTNRDLR 474 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDAL 528 +E+ +F R L+Y + I +PPLR R I AL+ + K + DAL Sbjct: 475 QEIEKGKFRRDLFYRIGVVTIEVPPLRERGSDILALLEHFSDHFAKETGRPKMSFGADAL 534 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF---TEQATDDVSATRLSTS 585 L S WPGN EL + ++ + L + + V DLP L E D + + S Sbjct: 535 KMLASYRWPGNVRELRNAVQRIYLVCSDPVVTVKDLPPELRDDFDESEEDSLESILSGNS 594 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 +E AI G + ++A+LGI R TL+RKM+Q+ ID + Sbjct: 595 GDLESIEASAIRRTIAAEKGNLTRVAAVLGISRPTLYRKMRQYRIDRSVGR 645 >UniRef50_Q2BKZ6 Sigma-54 dependent transcriptional regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BKZ6_9GAMM Length = 651 Score = 630 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 145/632 (22%), Positives = 254/632 (40%), Gaps = 23/632 (3%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + I SW R + + + A + + + ++ ++ +Y Sbjct: 27 SGIVRSEIEDSWIRSLEAGVKCESPLDMESLSRGGVADLKDKNRHLIEAAHPEVKQLVDY 86 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 A + + D A IL GD + L + G E + GT A+ A + Sbjct: 87 FAADGGLVMLADCEATILGVKGDKRHLDSATRQALETGANWDEQLRGTNAVGTAVVERSP 146 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTT-AADLPLTLAIAREVG 186 V +HF + + C+ P+ DSKG L G + L P + +L L R + Sbjct: 147 VMIKGHEHFLDKVGYLSCCSAPITDSKGELIGVLDLTSPTDNRELPPNLSLVQQAVRSIE 206 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N + + + ++ L S G+++ + G++Q +N Q ++L G+ Sbjct: 207 NRMFSGQFQQQVVLSVHSRPEYLRSSWQGMLAMELDGHIQAVNEQICQLLGRKREQLVGK 266 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 + EL + + ++ + P + + Sbjct: 267 NLEELFGIRPEVLLTDLHRK----QRGQLRTRGGDFVCELLHFP-----NSFPASIAKTP 317 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 + + SQ+ + + + DP+ ++ + G +A PVL+ GE G GK ++++ Sbjct: 318 AKPAKAKPSQIPLSAPELSELAGQDPRLKKGVRMGSRALAHELPVLIQGETGTGKEVMAK 377 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NENGRLSRLELAHGGTLFL 422 ++H +S R+ GP++AVNC + + E G T + G RLE AHGGTLFL Sbjct: 378 SLHLDSRRSDGPFVAVNCAAIPEGLIESELFGYREGAFTGSRKGGMTGRLEQAHGGTLFL 437 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + + LQ+ LL+V+++ I L + +D+ VI + DL LV + F LY Sbjct: 438 DEIGDMPLALQARLLRVLQERTIAPLGGGDEVALDIAVICASHRDLKSLVAEGAFREDLY 497 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y L+ + IP R R +N L+ L R++ID L L+ WPGN + Sbjct: 498 YRLNGVCLRIPAFRDRT-DKREFINGFLQQLTPD-GRRIEIDPVLLEDLLDYQWPGNIRQ 555 Query: 543 LYSVIENLALSS--DNGRIRVSDLPEHLFTEQATDDVSATR----LSTSLSFAEVEKEAI 596 L + + D I +S + + E V+ + E A+ Sbjct: 556 LETTLRVAIAFMEPDEAIIDMSHISDDFLEELNQTSVAELPDCIQADAIGALKSSELVAV 615 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 A GG I + LGI R TL+RK+KQ Sbjct: 616 QKAVDQCGGNISAAANALGISRATLYRKLKQL 647 >UniRef50_B2ILN3 Sigma-54 factor interaction domain-containing protein n=12 Tax=Proteobacteria RepID=B2ILN3_BEII9 Length = 680 Score = 629 bits (1624), Expect = e-179, Method: Composition-based stats. Identities = 160/631 (25%), Positives = 262/631 (41%), Gaps = 14/631 (2%) Query: 12 ISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + LI SW RC+ N P + T ++ ++ + A +++ Sbjct: 37 LRDLIDQSWRRCHDADIDHRRNQAPPPVKQDTLHALRDECAELIEASAPVMASARDFLGE 96 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + T ILS+ GD + G +E GT A+ A G+ ++ Sbjct: 97 TSTVMVLTNSTGLILSQEGDVSLRGAAENVHLLPGANWSEFTCGTNAIGTAIEIGRPIQI 156 Query: 131 MADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +++H+ + W+ A+ + + G G I ++ + L L +A A + + + Sbjct: 157 HSNEHYCSGIKRWSCSASIIKNPCDGSTLGVIDVSGLSHSYSRHSLALVVATAGRIESRI 216 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQGRAI 248 + ++ L DG++ D G N AA +L L A S R Sbjct: 217 AQMEMDLRYRLLEGCMDRLTAHSTDGIVVLDRHGRAIKANTHAAVMLADLGAPQSLTRNN 276 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 LTL + + P + + + + I QG S L Sbjct: 277 LFSLTLDWRRGHDLPEHLPPWIQKEWLTPMNAGGKRLGVILTIPNRQGAS--AKLARAST 334 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 L S+ + F + P RQ A+SS PVLL GE GVGK + ++ + Sbjct: 335 RIALPPSEPERTRI-FPKLVGQAPALLLAAARARQIAKSSVPVLLLGETGVGKEVFARDL 393 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEK 424 H S GP+IA+NC L E G T G + ++E A+GGTLFL++ Sbjct: 394 HEASAVGKGPFIALNCGGLSRDLLTSELFGYAEGSFTGARRGGMMGKIEAANGGTLFLDE 453 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L +LQ L+V+++ I R+ + ++ +++A T DL M + +RF LYY Sbjct: 454 IGELPTDLQPLFLRVLEEREICRIGEVQPRKVNFRLVAATNRDLRMETQASRFRMDLYYR 513 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFEL 543 L ITIPPLR R IP L + K++ + I D + L WPGN EL Sbjct: 514 LSVISITIPPLRERSEDIPLLAEHFTALFTKQYGLPSRHISADIMNALQQHDWPGNIREL 573 Query: 544 YSVIENLALSSDNGRIRVSDLPEH---LFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 +VIE + L+S N + +DLP L + + S T S E+E I+ Sbjct: 574 RNVIEGILLTSANETLTKADLPPEFSALTNKLPSTGNSDTSSSALTPIENAERETIVRML 633 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G + ++ LGI ++TL+ KMK ++ Sbjct: 634 RTHHGNMTAVARELGIAKSTLYVKMKIFQLE 664 >UniRef50_Q6LL49 Hypothetical Glycerol metabolism operon regulatory protein n=2 Tax=Photobacterium profundum RepID=Q6LL49_PHOPR Length = 651 Score = 628 bits (1621), Expect = e-178, Method: Composition-based stats. Identities = 233/632 (36%), Positives = 366/632 (57%), Gaps = 7/632 (1%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 + I P + W RC + + + W++PH+A+GVT+ASI + K + L + A+ED +EY Sbjct: 24 ELPNIEPHLQQVWARCRRQQRHDHWSMPHRAKGVTYASIQKSKASFLNIAIPAIEDIYEY 83 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + CA I DE C L D +L ALG +G Y EGI+G A+S A +A Sbjct: 84 LESESCAFVISDEAGCTLYLCADSAMKVKLDALGIQEGVYWREGIMGNNAISSAMHLAKA 143 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 +T +HFK+ L +A A P+F G G +AL PVE+ + + L L + +R++ + Sbjct: 144 TQTAGFEHFKEALHGFAVYAAPVFGDTGTALGCVALVLPVEKASVSALGLIHSASRDIAS 203 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 + +S+L E+N+HL++++ LLE +++GV++W G + ++N + +L L + GR Sbjct: 204 QMQAESMLTESNQHLSEVHVLLEGVEEGVLAWYPNGKIHYLNQKGCDLLGLTVSE-LGRE 262 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHP 305 I+ +LT+P + QAIKQ L V+ T ES+ + I V++LK + Q T+ +I LL+P Sbjct: 263 ISSILTMPQRVHQAIKQGVGLDMVDTTIESKGRLISLVMSLKIVKNAQNTTHCYIALLYP 322 Query: 306 VEQMRQLMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 ++ +R L+ +G + TF + R++ R AA+ PVLL GE+G+GK+ L Sbjct: 323 IKHIRDLVHQHVGNRARLTFDDIVGGSDAMLRVVRQARHAAKGRGPVLLHGEDGIGKSHL 382 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEK 424 +QAIHN S+R P+IA+NC+ +A EF+G ++++ +S+ ELA+GGTLFL++ Sbjct: 383 AQAIHNGSDRHGQPFIAINCQAIPKELMASEFLGSAL-ESDHTSVSKFELANGGTLFLDQ 441 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 +E L+ E+Q+ALL ++K G+I R++ ++ +DV+++AT+ DL V + F RQL Sbjct: 442 VECLSSEVQAALLHLLKTGLINRMNGN-IVSVDVRIVATSNVDLDQYVVEKHFRRQLLLE 500 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L F+I + PLR R +P LV KL LE T L + +AL+ L+ WPGN EL Sbjct: 501 LQTFDIHVSPLRDRIEDVPILVERKLTHLEAEKKTSLTLSQEALSFLMRYRWPGNHRELR 560 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +VIE A SD IRV DLP+ + T V L ++ S + EK II +A Sbjct: 561 NVIERSANFSDGSVIRVKDLPDIILTATEHGQVGDKALHSN-SLIDSEKMTIIRSALDCR 619 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 G++ M L + RTTLWRK+K H ID +K Sbjct: 620 GKVGNMCEDLKVSRTTLWRKLKNHDIDVNDYK 651 >UniRef50_Q4UYV5 Transcriptional regulator n=5 Tax=Xanthomonas RepID=Q4UYV5_XANC8 Length = 680 Score = 627 bits (1619), Expect = e-178, Method: Composition-based stats. Identities = 145/644 (22%), Positives = 264/644 (40%), Gaps = 32/644 (4%) Query: 7 NDGRGISPLIATSWERCNK--LMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 D ++ ++ SW RC + + E P + +R +L + + +E+ Sbjct: 52 RDIAPLAAPLSRSWRRCLEDYALLPEALPDPMVHDALHVRERQQRLGDVLRIARVEMENL 111 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 +E +A A+ D A +L DP L++ +G G AE GT L A Sbjct: 112 YEQIAGSGYAVIFADADATVLHSVHDPTLLREFRQVGLFAGASWAERHQGTNGLGTCAAE 171 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQ----TTAADLPLTLA 180 AV +H+ + C+ P+ D+ G L + + P Q + L Sbjct: 172 RTAVSVHRGEHYLTRHLPLSCCSAPILDAHGGLLAVLDASTPNAQDGKQIQRHTVALVSM 231 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-LD 239 A ++ + + + + +I+ G + +N L LD Sbjct: 232 SAAQISRSHFLNQFGHAFILRFHSRPEFAGLLHEALIAIGADGRVLAVNEAVLEQLGKLD 291 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + GR I++++ L + + + A++ P + Sbjct: 292 RSQLVGRDISQVMQLDFDTIEHRAGSDAGTLWSIRCACHGRRFYALV-RPPRARPALPAV 350 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 P + DP+ R + + A +LL G+ G Sbjct: 351 GGPAQPATETELNPGEH-----------VGSDPRMRHNLANALKLAAHRVSILLRGDTGT 399 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELA 415 GK ++A+H S A+G ++A+NC +A + E G TD GR +L A Sbjct: 400 GKEEFAKAVHRGSPWASGAFVAINCAAIPEALIESELFGYARGAFTDAAREGRHGKLLQA 459 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I + + LQS LL+V+++ +T L + R +P+++ VI+ + DLA V Sbjct: 460 SGGTLFLDEIGDMPLPLQSRLLRVLEEQCVTPLGSERAVPLELHVISASHRDLAQRVSAG 519 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA 535 F LYY L+ + +PPLR R L+ LR ++I ++A+ +L+S A Sbjct: 520 EFREDLYYRLNGVVLHLPPLRER-SDKAELIRTLLREENNERG--VRISEEAMHKLLSYA 576 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD------DVSATRLSTSLSFA 589 WPGN +L +V+ A+ + IR+ +LP+ + + V+A + ++ Sbjct: 577 WPGNLRQLRNVLRTAAVLCSDAVIRLPNLPQEIVDAGSAPCLVDGRAVAADDMPGRVALD 636 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + E+ + + + + LGI R TL+RK+++HG++ G Sbjct: 637 QAERLVLQQQLERHRWNVSRTADALGISRNTLYRKLRKHGLETG 680 >UniRef50_C0Z5M5 Acetoin catabolism regulatory protein n=2 Tax=Bacillales RepID=C0Z5M5_BREBN Length = 636 Score = 625 bits (1613), Expect = e-177, Method: Composition-based stats. Identities = 138/639 (21%), Positives = 258/639 (40%), Gaps = 50/639 (7%) Query: 8 DGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D I I SW R H G + ++ ++ + LE Sbjct: 21 DSSRIHQSIIESWYRSRNAQVSPYLDRGRHILSGESLRHQQQKNAMLMDVAAPFLEKMDR 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 + ++D +L G + + F +G E +GT A+ A GQ Sbjct: 81 LASEMGMIALLIDPEGYVLWMKGSKSVREVAEKIRFVEGVRWTEAEMGTNAIGTALSLGQ 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVG 186 + +H+ W+ A P+ + G + G + ++CPV++ L + A + Sbjct: 141 PIMVTGSEHYSIASHGWSCAAAPIRNDDGEVLGILDVSCPVDRAHPYMLGIVTQAAYTLE 200 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + S E + +LE + +I + + + A+R++R + G Sbjct: 201 KEVKLRSHHDEMELIQGSME-VLEK-EQPLIICNPRQKVV----AASRLIRQNIPNWCGM 254 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 E+ ++ + + G LL Sbjct: 255 RTEEIYM------------RGYRNRMEVPICSAEHGGFI----------GKCIYLLNAGE 292 Query: 307 EQMRQLMTSQLGKVS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 +Q+RQ + F R+ + + A + V + GE G GK +++ Sbjct: 293 QQVRQAVYQDKDSAKPFRFRGEAGTSRAFRKTLEELGRVASADINVFILGETGTGKEVIA 352 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLF 421 ++IH S+ A+GPY+AVNC L E G + + G + +LAH GT+F Sbjct: 353 RSIHENSKWASGPYVAVNCGAIPTELLESELFGYVEGAFSGAKRTGAKGKFQLAHQGTIF 412 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + +Q ALL+V+++ IT L + IP+D +VIA T ++ LV++ +F L Sbjct: 413 LDEIGEIPHSMQVALLRVLQERKITPLGGSQEIPVDFRVIAATHRNIHQLVKEGKFREDL 472 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 +Y L+ + + +P LR R IP LV++ ++ + A L+ WPGN Sbjct: 473 FYRLYVYPVHVPALRQRAEDIPHLVHH----YCEKHDWDAVFPPEFFAALMDYTWPGNIR 528 Query: 542 ELYSVIENLALSSDNG-----------RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 EL +V++ L + S N + ++L + + T + + SLSF + Sbjct: 529 ELMNVLDKLRILSMNRCDDLLHQLHSLLHQSAELSKSVSTSLSFPEQRTEEHRASLSFRD 588 Query: 591 -VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + ++ ++ A Q T G + + + LLGI R+T ++++ + Sbjct: 589 KIMQQQMVEALQKTNGNVSKAAKLLGIPRSTFYKRIHRF 627 >UniRef50_D2LG66 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LG66_RHOVA Length = 651 Score = 623 bits (1607), Expect = e-177, Method: Composition-based stats. Identities = 149/635 (23%), Positives = 246/635 (38%), Gaps = 28/635 (4%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + IA SWER A + L ALE + E + Sbjct: 23 LPRAIAASWERSRSFGVGTALARAPLADEPEIFRRRSLNASFLAASHPALERSREMLRDA 82 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + + D T +L GD + ++Q G EG IGT A+ A + V+ Sbjct: 83 ASMMILADRTGFVLETAGDGRVVEQGKGNALQTGGGWQEGAIGTNAIGTALAERRPVQVT 142 Query: 132 ADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +HF + + W+ A P+ G L G + ++ PV + L AI RE+ L Sbjct: 143 GAEHFCEDVQRWSCAAAPVHHPIDGELLGAVDISGPVATFNPQSMALAAAIGREIEATLE 202 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + L + L+ + + ++ D +G L A R + + R + Sbjct: 203 KAAKLDHEILLRHLLSKRSTWLSEDILVIDRRGYLVHSTETAMRKIDTASPDDLPRVLRR 262 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 ++ + + + G +LL Sbjct: 263 IIGSASAEAWERNCRDRFPNAGLEIVKSDGEV------------AGCLIVLLGKRSLPAS 310 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + + F + D R + R+ A + PVL+ GE GVGK L ++AI Sbjct: 311 PAIARAPKPAADAFDDIVGDSAVMRDVRERARKLAANPLPVLIEGETGVGKELFARAIKT 370 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIE 426 S A+GP++ VNC +A E G T + GR ++E A GG L L++I Sbjct: 371 ASACASGPFVPVNCGGMARDLIASELFGYVKGAFTGADGNGRPGKIEKADGGILCLDEIG 430 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + ++LQS LL+V++ G++ R+ P+ +++++ T DL V RF R L+Y + Sbjct: 431 EMPMDLQSYLLRVLEDGIVYRVGDHEGRPVSIRLVSMTNRDLMDEVGAGRFRRDLFYRIA 490 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYS 545 A + IPPLR R + L R +DAL L WPGN EL + Sbjct: 491 AARLRIPPLRERGDDVLVLAERFAGRTAARLGRATPSFSNDALMLLRHYGWPGNVRELRN 550 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATD----------DVSATRLSTSLSFAEVEKEA 595 VI+ + + RI V LP + + T L E++A Sbjct: 551 VIDAILALCETDRIDVEHLPLEMRMCDKASHRTCAEPAAAPKAPTVLPPRRGARTPERDA 610 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I+ + G + E + LGI R+TL+ ++ ++G+ Sbjct: 611 ILAEVEACAGNLTEAARRLGIARSTLYVRLAKYGV 645 >UniRef50_A3PJU4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Alphaproteobacteria RepID=A3PJU4_RHOS1 Length = 645 Score = 622 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 168/643 (26%), Positives = 262/643 (40%), Gaps = 38/643 (5%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 +SG + G+ P I SW+RC + R +L Sbjct: 23 LSGETTDLPAGVRPEILRSWQRCQTGGTDALAAGAPSVPRPDTPT---RSCELLEAASDT 79 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 L+ + L + D ++ GDP T ++ + G E IGT + Sbjct: 80 LDQLGRLLDGTGAMLLLCDGEGVVIRAMGDPSTREKGREINLEVGGRWDEEAIGTNGIGT 139 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKG-RLTGTIALACPVEQTTAADLPLTL 179 A G+ V A +HF + W+ A P+ D G G I L+ +L L Sbjct: 140 AIREGRPVFVHACEHFCAGIKGWSCAAAPIRDPFGFGTIGAIDLSGGPGIFRPHNLALVA 199 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNA-LLESMDDGVISWDEQGNLQFI-NAQAARVLR 237 A ARE+ LL ++A DD V+ D G + + N LR Sbjct: 200 AAAREIEALLGERHRQERERLLAAFIDAGASRGPDDAVVILDRVGRVVYSRNPPQGGGLR 259 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 D G+ + +L P+ Q L+ + I++ + Sbjct: 260 -DGLLKVGQPLLDLGPHPSDTQIVAALPPALQPSGIS--------------PLILDGERR 304 Query: 298 SFILLLHPVEQMR---QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 +L L + R + + G + + R+AA + +L+ Sbjct: 305 GTVLHLPARTKPRPVSAEIRPRAGTAEPPLP-IVGASDIFLEAVDLARRAAEAGSSILVQ 363 Query: 355 GEEGVGKALLSQAIHNESER--AAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGR 408 GE G GK L ++ +H SER A P+I +NC +A E G T +GR Sbjct: 364 GETGTGKELFARLVH-ASERHKADAPFITMNCGAIAVELVASELFGHVAGAFTGAMRDGR 422 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 + ELAHGG L L++I + +++Q LL+V++ I R+ R P++V+V+A T DL Sbjct: 423 PGKFELAHGGVLCLDEIGEMPLDIQPYLLRVLESRAIYRVGDSRRRPVEVQVVAMTNRDL 482 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK-LRSLEKRFSTRLKIDDDA 527 V F LYY + I +PPLR R+G +P LV++ + + L+ D A Sbjct: 483 MQDVSSGAFRADLYYRISTVTIEVPPLRARQGDVPLLVDHFNRAAARRLNRAPLRFSDAA 542 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 +A L +WPGN EL +V + L + R+ VSDLPE + S Sbjct: 543 MALLDGWSWPGNVRELRNVCDRLHVFVRGDRVEVSDLPEPMRRAPTLPSRPGE-----QS 597 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EVE+ AI A G + ++A+LG+ R TL+RKM+Q+GI Sbjct: 598 LDEVEETAIRQAFAAARGNVTRVAAILGVSRPTLYRKMRQYGI 640 >UniRef50_A2SCN8 Transcriptional regulator AcoR n=5 Tax=Betaproteobacteria RepID=A2SCN8_METPP Length = 676 Score = 622 bits (1606), Expect = e-176, Method: Composition-based stats. Identities = 149/645 (23%), Positives = 244/645 (37%), Gaps = 34/645 (5%) Query: 13 SPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 LI SW RC + P R + L + + +E ++ ++ Sbjct: 26 DSLIHRSWHRCVNTHGLDPAQSFGPRVESPTRLRESRERIEEYLQVARGGMEQLFKRVSD 85 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 L + D + G+ + G G E I GT + A+ Sbjct: 86 LGYVLLLTDADGVTVDYIGNDSWGKDAQRAGLYLGANWKEEIAGTNGIGTCIYEQAALTC 145 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC---PVEQTTAA-DLPLTLAIAREVG 186 D HF + PLF G+L G + ++ P + + L LT + + Sbjct: 146 HRDDHFYTGNVGLSCNTAPLFHPDGKLMGVLDVSALAMPNARESQHLALHLTTLYGQMIE 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL------RLDA 240 + L AL++ + D ++++D G L + A + L D Sbjct: 206 DANFVRHFRDHWILRLATSWALVDVLGDMMLAFDSDGVLAGASTGARKWLSGLALQGGDD 265 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 +GR +T++ + ++ + HQ + + S Sbjct: 266 APIEGRHLTDVFRCSMDDIWRLARSSNVMDRALLSAFDHQSYFGSVVAPRMRSA--ASSA 323 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 V + + + DD Q R L R+ A +L+ GE G G Sbjct: 324 AGPRDVTDAAPALAPASPAL----ERLAGDDKQMRALQDQARRLANKRINILIQGETGTG 379 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAH 416 K + ++A+H S R P++AVNC ++ + E G T G + AH Sbjct: 380 KEVFAKALHESSTRHDKPFVAVNCASIPESLIESELFGYTAGTFTGARSRGMKGLIVQAH 439 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGTLFL++I + + LQ+ LL+V+ + + L A R I +++ VIA + DL L+ Sbjct: 440 GGTLFLDEIGDMPLHLQTRLLRVLSEHEVLPLGADRPIRVELTVIAASHRDLRQLIAAGS 499 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 F LYY L + +P LR RR + L+ LR + TR I D+AL L W Sbjct: 500 FREDLYYRLCGATLPLPALRDRR-DLGYLIELILREEAEHLDTRAYIADEALELLERYEW 558 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHL----------FTEQATDDVSATRLSTSL 586 PGN +L +V+ SD I LP + A VS + + Sbjct: 559 PGNVRQLRNVLRFGLALSDGEGIYPEHLPPEVTAPPVLLLLPPASGAVPAVSVAQSPPAR 618 Query: 587 SF-AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E E ++ A Q I ++A G RTT++R+MK+ GI Sbjct: 619 AMTRPPEAERLLAALQEHRWNITAVAAQAGQNRTTIYRQMKRFGI 663 >UniRef50_B8GC55 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Chloroflexus RepID=B8GC55_CHLAD Length = 625 Score = 620 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 195/626 (31%), Positives = 313/626 (50%), Gaps = 11/626 (1%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 P I SW RC P Q V A+ + TL ++++ED ++ Sbjct: 7 PPIQRSWMRCQARGLDP--ATPPQTGPVNIAAW----SHLQTLARSSIEDLYQLSEHPGF 60 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 A+ I DE A I+ GD L G G E + GT A+ LA +T D Sbjct: 61 AVVICDEQATIIDVAGDSTILSLAQQSGIGYGISLLEEVAGTNAVDLALREALPYQTSGD 120 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS 193 +H+ L ++ A P+F GR G +A+ E L + +A A+ + N L + Sbjct: 121 EHYCNWLQPFSLAAAPIFSPDGRALGALAILTRAEMQHPYALGMVIAAAQALHNQLRAER 180 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 LL E N L++L A L+S+++G+I G ++ ++ + A +L ++ ++ GR + ++ Sbjct: 181 LLNEANDQLSELYATLDSINEGLIFVGPNGEIRRLSRRVASILDINVRSAAGRPLVSVIP 240 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQ 311 P + A+++ L E ++++ + +++P+ + ++ L P E +RQ Sbjct: 241 PPPAISTALQELTTLDEQEVIWQTRSGPQAVMCSVRPVWDRSRRYLGSVITLRPAESVRQ 300 Query: 312 LMTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L+ +G + + TF + R+ + R AA PVLL GE GVGK + +QAIHN Sbjct: 301 LVQQVVGARATFTFRDIIGQSEAMRQALRQARLAAAGRGPVLLRGEGGVGKEIFAQAIHN 360 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAV 430 S RA GP++ V C L E G + ++++ GR +LELAHGG L+LE I+ L+ Sbjct: 361 ASNRAGGPFVRVACAAIPRQLLDSELFGVESSEHQAGRPGKLELAHGGVLYLEAIDALSF 420 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 + Q+ LL+ I+ G + R +R IPIDV++I T DL LV++ RF LY L AF I Sbjct: 421 DQQTNLLRAIEMGRVIRSGGKRPIPIDVRLIV-TGHDLEQLVQEGRFRADLYARLSAFTI 479 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR R + L N+ ++ L ++ + + DALA L S WPGN EL V+E Sbjct: 480 DIPPLRRRGDDVLLLANHMVQRLSEQLGRPIALAPDALAALHSYPWPGNVRELEVVLEQT 539 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 ++ + V DLP + T A + + A E++AI+ A + GGR+ Sbjct: 540 VQTTAKSVLTVHDLPPAI-ARHTTPLAMADNPRLAEAHALSERDAIVRAVRSAGGRLSRA 598 Query: 611 SALLGIGRTTLWRKMKQHGIDAGQFK 636 + LLGI R TLWRK+ ++ I + + Sbjct: 599 ATLLGISRATLWRKITRYQISRDELR 624 >UniRef50_A8IDE1 Sigma54 specific transcriptional regulator n=4 Tax=Rhizobiales RepID=A8IDE1_AZOC5 Length = 647 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 147/640 (22%), Positives = 257/640 (40%), Gaps = 38/640 (5%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G+S + SW+R L A + +++ + AL+ + ++ Sbjct: 20 PVGVSASLLASWQRSRTLGVGAGRAEAPLADEPEIFRRRSQNASLVGAARPALDRSTRFL 79 Query: 69 APRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAV 128 A + + D + I+ GDP+ + + G E IGT A+ A G++V Sbjct: 80 ADAASMMILADASGFIVETAGDPRVMDKGRRNHLETGGRWDEATIGTNAIGTALADGRSV 139 Query: 129 KTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + +HF + + W ATP+ G L G + ++ P L L +AI +E+ Sbjct: 140 EICGAEHFCEEVQRWTCAATPVRHPLDGELLGVVDISGPAASFNPQSLSLAVAIGQEIEA 199 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L + + + ++ + + ++ D +G L +A + G Sbjct: 200 SLGRAAKMEHEVLLRHFVSKRSIWLSEDILVVDRRGMLVHAAHKA----GSTGSGLAG-- 253 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 I+Q EA + + + +++LH Sbjct: 254 -------------DIRQMIGAASQEAWEANCRRRFPNASLEVVKRDDAVVGCLIVLHTTR 300 Query: 308 QMRQLMTSQLGKVSH---TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 + + F + +DP + R+ A + P+L+ GE GVGK L Sbjct: 301 RRSASPAAVPRPAGEDGLAFEQILGNDPALHAVRERARRLAANRLPILIEGETGVGKELF 360 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTL 420 ++AI S GP++ VNC +A E G T + GR ++E A GG L Sbjct: 361 ARAIKGASPDPDGPFVPVNCGGMARELIASELFGYAKGAFTGADEHGRAGKIEKADGGIL 420 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 L++I + ++LQS LL+V++ GV+ R+ ++++++A T DL VE RF R Sbjct: 421 CLDEIGEMPLDLQSYLLRVLEDGVVYRVGEHEGRRVNIRILAMTNRDLLAEVEAGRFRRD 480 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGN 539 LYY + A + IPPLR R I L + R L AL R+ + +WPGN Sbjct: 481 LYYRIAAARLRIPPLRERGADIVTLAQTFAAAAASRLGRSSLVFSAAALDRMQAYSWPGN 540 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS----------ATRLSTSLSFA 589 EL +V++ L ++ R+ SDLP + + + Sbjct: 541 IRELRNVVDTLVALAEGDRLNESDLPPEVLAAPSPSRAPISRPLNNGSEGSPPPPGADLK 600 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+ AI+ GG + E + LGI R+TL+ ++ ++G Sbjct: 601 AAERAAILAQVTACGGNLTEAARRLGIARSTLYVRLAEYG 640 >UniRef50_B8FXK8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfitobacterium hafniense RepID=B8FXK8_DESHD Length = 666 Score = 619 bits (1598), Expect = e-176, Method: Composition-based stats. Identities = 145/643 (22%), Positives = 258/643 (40%), Gaps = 33/643 (5%) Query: 12 ISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 + P+IA SW+RC + + R ++L + +E + + Sbjct: 27 VRPIIARSWQRCLSYGLDPWSSDYPKCSDTLLKEKRREYNSLLVRIRPVMELLFAML--- 83 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 C + I D + + L + GTY E G AL++A V+ Sbjct: 84 HCNISICDGKGFVFDL------ITPLKSYPRTLGTYIEEATCGNGALTIALQEKVPVRID 137 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 + ++ + ++ P+ L G I P L + +A + + +LLL Sbjct: 138 GYEKYRVISHPYSSVCAPIV-VNKELIGAINATSPFGALPQEALEVIIAAGKLIESLLLE 196 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL-DATASQGRAITE 250 + L++ +I DE+ + N A + L R I E Sbjct: 197 RDGQN-LAENFQPWRELIDCSSWALIFLDEENRIAAANKVACQELGCGQEEQWLNRPIEE 255 Query: 251 LL--TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 +L + P + F+ A+ +++ I + + V Sbjct: 256 VLIDKRDSAYLTRDDSGQPKPPQKIRFKLHDSQGGAIRSMELIRKNSLELALGRYRRVLL 315 Query: 309 MRQLMTSQLGKV-------SHTFAH------MPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + + + G V S+ + + +++ + + VLL G Sbjct: 316 LDPGLPAHGGPVNPEQPVSSYLLNNHSQEVEFLGKGEEWKKIKELVSRTSPFPSSVLLLG 375 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSR 411 E G GK +L++ IH S+R G ++AVNC L E G T G + + Sbjct: 376 ETGTGKEVLARTIHRLSQR-QGNFVAVNCGAIPRELLQSELFGYVGGAFTGARSGGSVGK 434 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E AH GTLFL++I + +++Q +LL+ +++ +T++++ P+DV++IA T ++ L Sbjct: 435 FEHAHKGTLFLDEIGEMPMDMQVSLLRFLQERTVTKINSNYPKPVDVRIIAATNKNMYDL 494 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALAR 530 V Q F LYY L+ EI IPPLR R+ IP L + L K+F+ KID+ + Sbjct: 495 VGQGLFREDLYYRLNVIEINIPPLRERKEDIPMLAQFFVAELCKQFNILPKKIDEATMET 554 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L WPGN EL +V+E + + I LP+ +F + + Sbjct: 555 LDRHVWPGNVRELKNVMEKAVVMTAGDTITPDVLPKQIFQTLEPPSPQPADNPGTEAEEL 614 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 EK+ I++ + GG + + + L I R TL+R++ +H I Sbjct: 615 SEKDYILHMLEQHGGNVAQTAKALNIARNTLYRRLLKHNIQLK 657 >UniRef50_A6VWJ2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Gammaproteobacteria RepID=A6VWJ2_MARMS Length = 659 Score = 619 bits (1597), Expect = e-175, Method: Composition-based stats. Identities = 138/636 (21%), Positives = 250/636 (39%), Gaps = 34/636 (5%) Query: 14 PLIATSWERCN-KLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPR 71 +I SW+RC + + P L + +A +E + +A Sbjct: 31 EVIGRSWQRCLSEYGLDPSQPRPARIVTHQILREHQDSVDEFLNVARAGVEQLYTQIAGL 90 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 L + D + G ++L G G +E GTCA+ QA+ Sbjct: 91 GYVLLLSDYRGITVQFLGSKNDDERLHRAGLYLGADWSEQYAGTCAVGTCIQEQQALTCH 150 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD----LPLTLAIAREVGN 187 HF A P+ D G+L + ++ T L LT AR + + Sbjct: 151 RVDHFDSSHIGLTCTAAPIKDPSGQLLAVLDISALDSSRTPDSQNFALHLTQLYARLIED 210 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 +Q L++ + + +E G + N +L + Sbjct: 211 AYFLRRYRHSLIFKCDQSRELVQVNGQCLFALNEDGEVLAANTAGRSLL----------S 260 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 ++ LP V + + V +ES+ ++ P + Sbjct: 261 QCHIIDLPTVYLPTLLECQWRDIVSINYESKDGIRAFRLSGTQQTLFGMLIEPATSVPYQ 320 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + + + + DDP R+ I ++ +L+ G+ G GK +L+QA Sbjct: 321 PQLSQILATQEESVPQLDGLSADDPAMRKTISLAKRLRHRDMNLLILGDTGTGKEVLAQA 380 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLE 423 IH+ S RA PYIAVNC ++ + E G T G ++ A GGTLFL+ Sbjct: 381 IHDTSHRALKPYIAVNCAAIPESLIESELFGYAPGTFTGGRAKGAKGLIQQASGGTLFLD 440 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V+ +G + L + + I +DV+V+A T +LA L+++ RF L+Y Sbjct: 441 EIGDMPLHLQTRLLRVLAEGQVMPLGSLQAIDVDVRVLAATHCNLAQLIKEGRFREDLFY 500 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 ++ + +P L+ R P L+ L+ + +++ DA++ L++ WPGN +L Sbjct: 501 RINGATLNLPTLKAR-ADKPYLIQMLLKKIN----PAVRLRADAMSALLAYEWPGNIRQL 555 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQA---------TDDVSATRLSTSLSFAEVEKE 594 + + + I + LPE F Q LS + E++ Sbjct: 556 VNTLTFADAICETDEISIQHLPEEFFVHQNGLVEPLIPLHPITPTYEGCQKLSNDDSEQQ 615 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++N + + ++ LG+ R T++R+M +H I Sbjct: 616 FLLNLLRQQRWNVSAVAKQLGVSRPTVYRRMTKHQI 651 >UniRef50_A9BXK1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=A9BXK1_DELAS Length = 653 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 137/625 (21%), Positives = 245/625 (39%), Gaps = 18/625 (2%) Query: 12 ISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + +A SW+RC + R T + + R A+L + +E E + Sbjct: 28 VDERLARSWQRCIEQGLRPTGRLGAADNLEQHALGVLRSRHHALLAHSRPVMEYLSEQVR 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + ++ GDP L + + G E GT A+ A +++ Sbjct: 88 GSHSVVVLAGPCGTLVDTCGDPFFLGKAERVALASGASWHEAQRGTNAIGTALAEMDSIE 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLL 189 +HF + A P+ G+L G + ++ + + L L AR + N L Sbjct: 148 IQGGEHFLERNGFLTCAAAPILSGTGQLLGILDISSEHGRGSPHTLGLVGTAARMIENRL 207 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + HL+ + ++ +G+ G L N A +LRL ++ Sbjct: 208 MACDGQRHIRLHLHARPEGIGTVAEGIALISADGWLVGANRAALALLRLSRGQLGSVSLE 267 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 ++L + + P ++ + T ++ V + Sbjct: 268 QVLDAGLEELLSRQHRQPDAAQPLRRHDGTALFGQLVP------DRRTVRSSVVERVAEQ 321 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 +Q + A + D + R R+ +L+ GE GVGK ++A H Sbjct: 322 QQQEQAPQQPARDALARLDTGDARWRTAADKARRVLGKPIALLIQGESGVGKEWFARAAH 381 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGG---DRT-DNENGRLSRLELAHGGTLFLEKI 425 + R GP++A+NC ++ + E G T G+ L AHGGTLFL++I Sbjct: 382 DSGPRRDGPFVAINCAAMPESLIEAELFGYRQGAFTGGRREGQAGLLRQAHGGTLFLDEI 441 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ+ LL+V+++ + L + +D +++ + L +Q RF LYY + Sbjct: 442 GDMPLPLQTRLLRVLQERQVVPLGGGTPVAVDFALVSASNRRLREDADQGRFRADLYYRI 501 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + + +PPLR R G AL L + + L++ LA+L WPGN + S Sbjct: 502 NGLAVELPPLRER-GDFEALAARMLADI--EPARPLRMAPALLAQLAGHGWPGNLRQCAS 558 Query: 546 VIENLALSSD--NGRIRVSDLPEHLFTEQATDDVSATRLS-TSLSFAEVEKEAIINAAQV 602 V+ D ++ LP+ E S RL S E+ + A+ A + Sbjct: 559 VLRTACAMLDPHEDCLQWQHLPDDFQAELVQTARSGPRLDAAPQSLDELSRSAVRQALEN 618 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQ 627 G + + + +LGI R TL+RK+ Q Sbjct: 619 CRGNVTQAARMLGISRQTLYRKLAQ 643 >UniRef50_Q47ZM3 Acetoin catabolism regulatory protein n=2 Tax=Alteromonadales RepID=Q47ZM3_COLP3 Length = 658 Score = 617 bits (1591), Expect = e-175, Method: Composition-based stats. Identities = 144/639 (22%), Positives = 263/639 (41%), Gaps = 42/639 (6%) Query: 13 SPLIATSWERCNKLMKRET--WNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 L+ +SW+RC + K + + + + + + +E+ + + Sbjct: 26 KNLVTSSWKRCIQTFKLDPLGRHGSRVLTQSELQNHTSPMEEFIITAREGMENLYSQVEA 85 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + D+ A + G+ + + L G G E GTCA+ + Sbjct: 86 LDYVVLLCDKNAVTVDFIGNNRLTKDLRNAGLYLGADWNERHAGTCAVGTIINELVPLTI 145 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIA---LACPVEQTTAA-DLPLTLAIAREVG 186 HF V A+P+ D G+L + L+ P E+T+ L L A + Sbjct: 146 HQQDHFDIVNTTLTCSASPILDHNGQLLAVLDVSALSSPKEKTSQHLLLKLVQMHAGLIE 205 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV----LRLD--- 239 + T + + L + +I+ D + N A + L ++ Sbjct: 206 AANFLNYYSNSTILKFDINISALNTYCPNLIALDSNNVVIAANQNARTIIARELGINDIR 265 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + G IT L L A L + +S++ I +P + Sbjct: 266 SQLLTGFDITSLFQLGAGLNN--------SSAQIIIKSKNTGIAFYCNFQP---PRIKIR 314 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 +L+ ++Q T + + DP +++ + + + +L+ GE G Sbjct: 315 NTVLNQTSSIKQDNTKPIAA---EIDKIAGSDPVMQKVKLLLNKFSPTDINMLIQGETGT 371 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELA 415 GK +L+ AIH S R GP+IAVNC D+ + E G T G+ + A Sbjct: 372 GKEVLANAIHLCSNRRKGPFIAVNCAALPDSLIESELFGYKAGSFTGASSKGKTGLILAA 431 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV--E 473 GTLFL++I + LQ+ LL+V+ + V+T + + + I +D ++I+ T D++ + E Sbjct: 432 DKGTLFLDEIGDMPATLQTRLLRVLAEKVVTPVGSDQAIAVDFRLISATHQDISPQIDSE 491 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 Q+ F LY+ L+ I +P LR R+ + LV+ + S K + + +A+ L Sbjct: 492 QSTFRADLYHRLNGATINLPALRDRQ-DLHYLVSCLVSSESK-----IGLSKEAMQILAE 545 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA--TDDVSATRLSTSLSFAEV 591 +WPGN EL +VI + D+ I LPE++F ++ T + + E Sbjct: 546 YSWPGNIRELKNVISYASTLCDDNTITPEHLPEYVFDCTPFIFNENEGTHIQHAEILPE- 604 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + I++ + E + L IGR TL+RKMK++ I Sbjct: 605 QGQKILDTLRHNNWNATETAKQLAIGRATLYRKMKKYSI 643 >UniRef50_A1BBZ5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Rhodobacteraceae RepID=A1BBZ5_PARDP Length = 619 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 131/635 (20%), Positives = 237/635 (37%), Gaps = 46/635 (7%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAAL 61 A + SW RC + + P + + +L + + + Sbjct: 18 AEGETSPRRDADVLASWRRCVNEHQLDPSRHAGPRIVTQKELRQHRQESEELLGVARHGM 77 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 ED + + L + + + GD + ++L G G+ E +GT + Sbjct: 78 EDLYRRVNAMGYVLLLANARGVTVDAIGDAELDRELRHAGLIAGSEWHERHVGTNGVGAC 137 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL-- 179 +G+A+ HF L + A P+ D++G L G + L+ LTL Sbjct: 138 LATGRAITVHRTDHFDVALTPLSCTAVPVHDTRGGLIGVLDLSHLQAPQDKMSQALTLEV 197 Query: 180 --AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL- 236 + R + L A+ LN L+ ++ D +G + + A +L Sbjct: 198 MKSCVRRIEMANLVRRHRADWILRLNPSPEFLDVDPMAAVAIDPEGRISGMTNNARELLA 257 Query: 237 RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 A A GR ++ + +A + Sbjct: 258 GGPAQALIGRRFDDIFAYDMDDLPKLSRAMAPVDGALEMQ-------------------- 297 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 ++ V + G + + DP L + V+L GE Sbjct: 298 AGGLIFARAVPPTAPPRRAAEGSLPQPLRAIHGGDPAMECLAERAAKVVDRQISVILRGE 357 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRL 412 G GK +++A+H S R G ++A+NC +A + E G T G+ + Sbjct: 358 TGTGKEFIARAMHESSRRR-GAFVAINCAALPEALIESELFGYTPNAFTGAHARGKKGLI 416 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 AHGGTLFL++I + + LQ+ LL+V+ + + + A R P+D++VI+ + DLA LV Sbjct: 417 REAHGGTLFLDEIGDMPLALQARLLRVLSERELLPVGATRAEPVDIRVISASHHDLAQLV 476 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 + RF + LYY L+ + IPP+R R + L + + + + A+A L+ Sbjct: 477 AEGRFRQDLYYRLNGLVLDIPPVRAR-ADLEWL----IARIAGATEGKPRFSPQAMALLL 531 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 + WPGN E+ ++ E A D + + LP + A A Sbjct: 532 AHDWPGNVREIVNLCELAAAMCDGAPVLPAHLPAGMADRAALSRSPAGSRPEDE------ 585 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 ++ GG + + I R+T +R++++ Sbjct: 586 ---LLRLLDEHGGNVSAAARAAKIDRSTFYRRLRK 617 >UniRef50_A7K4B9 Sigma-54 interaction domain family n=9 Tax=Vibrio RepID=A7K4B9_VIBSE Length = 641 Score = 615 bits (1588), Expect = e-174, Method: Composition-based stats. Identities = 217/634 (34%), Positives = 353/634 (55%), Gaps = 16/634 (2%) Query: 4 AFNNDGRGISPL-----IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQ 58 AF +SP + SWERC K TW+ PH A G TF+S+ +R + ++ Sbjct: 12 AFFQKHHWVSPEFSRTPVLESWERCIKRCSPYTWSKPHIASGFTFSSLMKRNEHLIECAT 71 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 LED ++ + + L + D CILS G Q++ ALG G + +EG IGT A+ Sbjct: 72 TVLEDTYDMLGDEDLLLMVTDGNGCILSTVGHDSMRQEMQALGIKQGCFLSEGKIGTNAV 131 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 +L + + A +HF + L ++A A P+FD G+L GT L E DL + Sbjct: 132 NLCINTHIPCEVFAAEHFNRHLHSYASVAAPVFDQFGKLRGTTCLFKKAESYKKEDLVII 191 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 + A+EV + S NR NA LE MDDG+++WDE+ + +N Q+ R+L + Sbjct: 192 ASSAKEVSLQIHIQSEQENMNRLTCAHNATLECMDDGLLAWDEESRITMVNHQSERLLNI 251 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 +A+ + + +L P + +I+ + T E + +F++A+ITL+P+ + + Sbjct: 252 EASQVLDKEVFSVLRFPPNVLNSIESGASINRKLTTVEVRGEFVEAIITLRPLNDG---T 308 Query: 299 FILLLHPVEQMRQLMTSQL-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 +L LHP++++R+L Q+ G +TF+ +P + + +I ++A +S P+L+ GEE Sbjct: 309 HLLFLHPIDKIRELAQQQIGGSARYTFSTLPVISRKMKHVITVAKRAIKSKSPILITGEE 368 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 GVGKA L+ AIHNES GP+I +NC L +E +G D G S+ ELAHG Sbjct: 369 GVGKATLAMAIHNESTYKEGPFITLNCRSINTEQLVKETLGYDEG---QGMPSKFELAHG 425 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFLEK+EYL+ +LQ+ LL+++K G+++R D+ RLIP+D ++I +T ++++ V Q F Sbjct: 426 GTLFLEKVEYLSPDLQAVLLKLLKTGLVSRSDSLRLIPVDFQLITSTASEISEYVTQRSF 485 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 RQLYY + + E+ IPPLR R+ I LV + E+R + + I+ AL L++ W Sbjct: 486 GRQLYYEISSNELHIPPLRKRKEDIEFLVQQLISHYERRHNVTISIEPVALEALMNFRWS 545 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN+ EL + E + L+ + I+++D+PE + + + ++ E E+ AI+ Sbjct: 546 GNNSELRNRTERILLNRSSNLIKLNDIPEDI----KLNSRHTAENTPVITLEEAERRAIV 601 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 A G++ +M+ L IGRTTLWRK+ + G+ Sbjct: 602 QAWNQCDGKMHDMAKALQIGRTTLWRKINKFGLQ 635 >UniRef50_B1XZ38 GAF modulated sigma54 specific transcriptional regulator, Fis family n=5 Tax=Proteobacteria RepID=B1XZ38_LEPCP Length = 753 Score = 614 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 128/588 (21%), Positives = 226/588 (38%), Gaps = 32/588 (5%) Query: 14 PLIATSWERCNKLMKRETWNVPHQAQG-VTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 I S ERC G + R + + +E +E + + Sbjct: 37 ERIDESHERCQAFGLSRIERPDFSPMGRSDLGVVRDRNQRLYVHAAPVMEMLYEQIVNSQ 96 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D T I+ GD L + S + G +E GT + A I A Sbjct: 97 NMVVLTDATGTIIHSIGDDDFLSRASKVALQPGANWSESSKGTNGIGTALIEETPTLVHA 156 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 D+HF A P+ D +G + G + ++ + L AR + N L+D Sbjct: 157 DEHFLHANHFLTCSAAPILDPRGNILGVLDVSGDQRSYHQHTMGLVKMSARMIENHWLSD 216 Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 H + + ++ +G+++ + G L N A L L A + +T L Sbjct: 217 DYRNVMRLHFHSRVEFIGTLMEGILAVSQDGKLVGANRGALEQLGLSGAALRMHTLTSLF 276 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI------LLLHPV 306 ++ + S QF P+ S + Sbjct: 277 GTTVPALVDRFRSPLAAPLSVEAGSGRQFHVYARFSWPVWHNADPSVRDEPVQPAVERST 336 Query: 307 EQMRQLMTSQLGK-----------------VSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 +++ + + A + D L+ R+ Sbjct: 337 DRVSERAGERPAAPAPSASAAEPRQAAGQGSREGLASLTTGDAAVGTLVDKIRRVLNRDI 396 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-E 405 P+L+ GE G GK LL++AIH +SERA P++AVNC D + E G + T Sbjct: 397 PILILGETGTGKELLARAIHQDSERAKQPFVAVNCASIPDTLIEAELFGYEEGAFTGARR 456 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G + R+ A+GGTLFL++I + + LQ+ LL+V+++ +T L + + + +DV ++ T Sbjct: 457 KGAVGRIVQANGGTLFLDEIGDMPLALQAHLLRVLQERQVTPLGSGKAVAVDVTLVCATH 516 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 +L ++EQ F LYY L+ + +P LR R + ALV+ L R RL++ Sbjct: 517 RNLREMIEQKTFREDLYYRLNGLAVRLPALRER-SDLMALVDRILERECPR--RRLQLSA 573 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQ 572 + + WPGN +L++V+ + + ++ L + + Sbjct: 574 EVVKLFQGYHWPGNVRQLFNVLRTACVMAAGDSQVTRDHLSDDFIEDA 621 Score = 63.5 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%) Query: 566 EHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + A S S ++E ++I A + GG I + LGI R T++RK+ Sbjct: 688 PDWLVPRPVAAAPAAADEPSRSLEDIELQSIRLAVEAAGGNISVAAKRLGISRNTIYRKL 747 Query: 626 K 626 + Sbjct: 748 R 748 >UniRef50_D1RT04 Transcriptional regulatory protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RT04_SEROD Length = 647 Score = 613 bits (1581), Expect = e-174, Method: Composition-based stats. Identities = 137/637 (21%), Positives = 246/637 (38%), Gaps = 45/637 (7%) Query: 16 IATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPREC 73 I SW+RC + + + + + + L ++ +A Sbjct: 32 IRDSWQRCVEHHGLDPRRMQEARILPWHELREHRQEMEEFRHIAHHGLTVLYQQIAAAGY 91 Query: 74 ALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMAD 133 + + D + GD L G G E GTCA+ A +G+A+ Sbjct: 92 VVLLTDARGITVDYLGDANAEISLRRAGLFLGAQWTEACAGTCAVGTALATGKALTVHQA 151 Query: 134 QHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR----EVGNLL 189 HF A PLFD +G+L + ++ + L L +A+ ++ N Sbjct: 152 DHFDATHIPLTCTAVPLFDPQGQLNAILDISALSSPQPKSSQQLALQLAKIYAHQIENAW 211 Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL----RLD------ 239 + L+ ++ +E D +I++D G + N +A R+L + Sbjct: 212 FEHRHRGDWVLKLSPASSFVEVSPDFLIAFDAAGKVVGHNHRAQRMLENELGIAAPPVHC 271 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + G I +L + + T E +T Sbjct: 272 RSTLLGWPIEQLF--NTSIDSLPDWLASASGQQGTLERARSGEKLYVTA----------- 318 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + PV + + + G + A + D + + + + +++ GE G Sbjct: 319 ---VQPVRRAPRKAAASQGALPPALAALNGGDAALQLQLQRAARLLEAPLHLMVHGETGC 375 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELA 415 GK ++A H S R ++AVNC A + E G + GR ++ A Sbjct: 376 GKEFFAKAFHQASNRRHRAFVAVNCAAIPAALIESELFGHLPGSFSGAGSKGRRGLIQEA 435 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++I + +E+Q+ LL+V+ + + + A R + +D++VI+ + L LV++ Sbjct: 436 DGGTLFLDEIGDMPLEMQTRLLRVLAEQEVLPVGASRPVSVDIRVISASHHALDQLVQEG 495 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA 535 RF L+Y L I++P LR R + LV+ L + ++ A RL Sbjct: 496 RFRADLFYRLQGARISLPALRQR-SDLDWLVDKLLA-------GKAQLSAAARRRLHQHR 547 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEA 595 WPGN EL + ++ A D GRI +DLPE L + + E + Sbjct: 548 WPGNLRELSNALDYAAALCDGGRIEATDLPEGLTAAIPASPLPMVNAEADAALP-PEAQL 606 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 +I + ++ +GI R TL+R+M++ GI + Sbjct: 607 LIQYLRAARWNHSAVARQMGISRMTLYRRMQRFGIQS 643 >UniRef50_D0FRF9 Transcriptional regulator n=2 Tax=Erwinia pyrifoliae RepID=D0FRF9_ERWPY Length = 643 Score = 612 bits (1578), Expect = e-173, Method: Composition-based stats. Identities = 149/638 (23%), Positives = 254/638 (39%), Gaps = 49/638 (7%) Query: 13 SPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 I SW RC +L + E + H R +A + + AL+ ++ +AP Sbjct: 29 DQAIRDSWLRCVELHRLEPGRMQEAHILPWAQLCEHRERIEAFRCIARHALKALYQQIAP 88 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D ++ GD L G G +E +GTCA+ + +G+A+ Sbjct: 89 AGYVVLLTDVQGVVVDFLGDETAGNGLRRAGLFPGAQWSEACMGTCAVGTSLATGRALTV 148 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIA----REVG 186 HF A PLFDSKG+L + ++ + L L +A ++ Sbjct: 149 HRGDHFDATHIALTCTAVPLFDSKGQLIAVLDVSALDSPQPKSSQQLALQLARLAAHQIE 208 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD------- 239 N L + L+ E D +I++D G + N +A R+L + Sbjct: 209 NAWLMHCHRTDWVLKLSPSYPFNEVSADFLIAFDTAGRVAGYNQRARRMLEHELVNCPSP 268 Query: 240 ---ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG 296 + GR I +L T + + A Sbjct: 269 YHGRSTLLGRPIDQLFTTTIDSLPLWLTGADGSQKTLLLCNSGSALYASAR--------- 319 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 P + +++ + A + D ++ + + + +L+ GE Sbjct: 320 -------QPDGRSAHQRSTEARALPTPLAALCGGDADLQQQLQRAARLLNTRLHLLVHGE 372 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRL 412 G GK ++A H ER P+IAVNC + E G + GR + Sbjct: 373 TGCGKEYFARAFHQSGERGNQPFIAVNCAAIPAELIESELFGHLPGSFSGAGSKGRRGLI 432 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 + A GGTLFL++I + + +Q+ LL+V+ + + + A R +P+D++VI+ + L LV Sbjct: 433 QEADGGTLFLDEIGDMPLMMQTRLLRVLAEQEVLPVGASRPVPVDIRVISASHHALDRLV 492 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 EQ RF L+Y L +I++PPLR R + L+ N L + ++++ A RL Sbjct: 493 EQGRFRADLFYRLQGAQISLPPLRQR-SDLDWLIGNMLDA-------QVQLSTAARQRLH 544 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL +V+ + GRI V DLP+++ Q + R Sbjct: 545 QHGWPGNLRELSNVLAYATAMCEGGRIEVIDLPDNIGEPQFSQQSLCNRPELPQDAL--- 601 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 II + + +GI R TL+R+M+++GI Sbjct: 602 --RIIQHLRAARWNHSAAARQMGISRMTLYRRMQRYGI 637 >UniRef50_Q02SW3 Transcriptional regulator AcoR n=12 Tax=Pseudomonadaceae RepID=Q02SW3_PSEAB Length = 625 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 141/629 (22%), Positives = 237/629 (37%), Gaps = 49/629 (7%) Query: 12 ISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMA 69 + I SW R + + + + P R + L + + + Sbjct: 28 VPTPILDSWRRSMEQHRLDPGSLQGPRILSQTLLDECRERSELFLRIASEEVARLHGRVR 87 Query: 70 PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVK 129 + + + D + + G GT +EG GTC ++ AV Sbjct: 88 DADYCVLLTDAQGRTIDYRVESTIRNDCRKAGLYLGTCWSEGEEGTCGVAAVLTDRTAVT 147 Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI----AREV 185 HF+ + A P+FD +G L G + ++ L + ARE+ Sbjct: 148 VHKRDHFRAAFIDLTCSAAPVFDPQGELLGVLDVSAVQSPDDRRSQHLIRQMVAQSAREI 207 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 N S ++ ++S D + +WD G L +N A LR Sbjct: 208 ENAFFMHSAQGHWVLRAHRAPGYVDSQPDYLFAWDADGRLLALNPAARHYLRQRLGQVP- 266 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 I E+ L A+ A + + G + L P Sbjct: 267 SHIGEVFDLDALHAAA------------------DQAPCL-----LRGQAGELHVRLSAP 303 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + R+L + DP+ + + + PVL+ GE G GK + + Sbjct: 304 RAKARRLEREVPDDAAL--------DPRIAESLRLAVRVKDRNLPVLIQGETGAGKEVFA 355 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLF 421 + +H S R P++A+NC ++ + E G T G L+ A GGTLF Sbjct: 356 RQLHQASARRDKPFVALNCAAIPESLIESELFGYVGGAFTGAAAKGMRGLLQQADGGTLF 415 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + + LQ+ LL+V+ +G + L A R +D++VI T DLA LV F L Sbjct: 416 LDEIGDMPLGLQTRLLRVLAEGEVAPLGAARRQAVDIQVICATHRDLAALVAAGGFREDL 475 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 Y+ L +PPLR R AL+ L R+++ + A L+ WPGN Sbjct: 476 YFRLGGARFELPPLRER-SDRLALIRRILDEETAHCGVRIELGEAAPECLLGYRWPGNVR 534 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQ 601 +L V+ ++++DLP L E T + E++A+++A Sbjct: 535 QLRHVLRYACALCGGATLQLADLPAELRGEGRTPASACESGGGP------ERDALLDALV 588 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + LGI R TL+R++++HGI Sbjct: 589 RHRWKPMAAARELGISRATLYRRVRRHGI 617 >UniRef50_B1Y0Y8 GAF modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Burkholderiales RepID=B1Y0Y8_LEPCP Length = 705 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 136/690 (19%), Positives = 249/690 (36%), Gaps = 69/690 (10%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVP--HQAQGVTFASIYRRKKAMLTLGQ 58 + G+F + + +A SW RC + R ++ + Sbjct: 19 VRGSFGEESNDV---VARSWRRCMDEYLLHPDRPRDLRALDPAAIEARLDRMSTLVDCAR 75 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 + ++ +A E A+ + D IL P ++++ LG G +E GT + Sbjct: 76 HEMATLYQQLADDESAVVLTDTDGVILHMVASPDFAREVAPLGLRTGVVWSETEAGTNGM 135 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 + V D+HF A P+++ G + + ++ L L Sbjct: 136 GTCLAAACPVSVQRDEHFYTQFTGLTCSAVPVYNPSGEMAAVLDVSSRSTLMQQHLLVLL 195 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AR + N L+ H + + ++ +G ++ + G + N A L L Sbjct: 196 GMTARMIENRLIDQCFRHAHPLHFHSRPEFVYTLHEGRLAVSDDGRILAANRSALFQLGL 255 Query: 239 -DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + R I ++ V + AV+ + Sbjct: 256 QSVNDIRSRRIEDIFQTSQEDLLQRSSLSSFHPVVTYRANAANRFFAVMRRPALEAGALQ 315 Query: 298 S-FILLLHPVEQMRQLMTSQLGKVSH-----TFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 +L+HP R + T + + T A + DPQ R + R+ PV Sbjct: 316 GQGAVLIHPAGPGRSVATRAAAQAAAARPPGTVATL--ADPQLARHLDVARRVIARQTPV 373 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENG 407 LLCGE G GK + ++ +H S A G ++AVNC ++ + E G T +G Sbjct: 374 LLCGETGSGKEVFARLVHEGSPNANGAFVAVNCASLPESLIEAELFGYRAGAFTGAQRSG 433 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R ++ A GGTLFL++I + ELQ+ LL+V+++ +T L + I + ++++ + + Sbjct: 434 RRGKILQADGGTLFLDEIGDMPPELQARLLRVLEERQVTPLGSEETISVQFQLLSASHRN 493 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 L LVE+ F LYY L E+ +P LR R L+ + L T ++ A Sbjct: 494 LLDLVEKGAFREDLYYRLAGVEVNLPALRER-SDRHELMRSLLV---AEGGTDARLSPAA 549 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF------------------ 569 L++ WPGN +L V+ + +D I V LP L Sbjct: 550 EDLLMAYPWPGNVRQLRHVLRSACALADGEPIEVEHLPLALRKTVAAGEYGVSGALPSIA 609 Query: 570 -----------------------------TEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 + D+ + E++ ++ Sbjct: 610 SPAVVARLVAPPHDAAPNLPAEGDSAGLAADHRADEPAEEPPLKLNPILANERQVLLKML 669 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + ++ + R TL+R++ + I Sbjct: 670 EQHRWNVSNVAKAFDVSRNTLYRRLHKLHI 699 >UniRef50_A7HEU6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HEU6_ANADF Length = 637 Score = 610 bits (1574), Expect = e-173, Method: Composition-based stats. Identities = 172/643 (26%), Positives = 270/643 (41%), Gaps = 26/643 (4%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDA 64 + + G+ P IA SW R L + + R + L + L Sbjct: 2 RDGELEGVRPEIARSWTRVRDLYRVDPALRRAPLDAGGEVLRRRGEDETFELARPVLAQL 61 Query: 65 WEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAIS 124 + AL +LD +LS GDP + +L+ L G E + GT A Sbjct: 62 SARLGETGHALALLDAEGRVLSIGGDPHVVARLAELNLTPGASWREEVAGTNGAGTALAE 121 Query: 125 GQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 + V+ A +HF + WA A P+ G L G + + P + + +AIA Sbjct: 122 RRPVEVFASEHFVEAWHPWASAAAPIVAPGGELVGLVQVTGPWDTREPQGVVAAVAIAAA 181 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 V L + L + A S DGV++ D +G + N A R L + Sbjct: 182 VEERLRARAELRDELVRHALRAA--RSSGDGVVAVDARGRVLAANDAARRRLAFEGGELP 239 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL- 303 R+ E + A+ + + E T E + + ++ + LL Sbjct: 240 -RSTRE------RIVAALHGSEATREDELTVEWPGAGDERRRVVCSVVAHERRPVGALLF 292 Query: 304 --HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 P + + Q + F + + R + AAR+ PV+L GE G GK Sbjct: 293 AAAPAGRASRGAARQRLAARYGFEAILGGSARLRTALDLAEVAARNDLPVVLHGESGTGK 352 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L + IH RA P++A+NC A + E G + T G+ R E A G Sbjct: 353 ELFAHGIHAGGARADEPFVALNCGAIPAALVEAELFGYEPGTFTGAQREGKAGRFEEADG 412 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L + Q+ALL+V+++ + RL P+DV+++A T L VE RF Sbjct: 413 GTLFLDEISELPPQAQTALLRVLQESEVVRLGGSAPRPVDVRIVAATNRRLYDQVETGRF 472 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAW 536 + LY+ L+ + IPPLR R +P L LR E+R L++ +++ A L++ W Sbjct: 473 RQDLYFRLNVLHVDIPPLRDRSEDVPLLARAFLREAEERMGRAGLELSEESKALLLAHPW 532 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDL------PEHLFTEQATDDVSATRLSTSLSFAE 590 PGN EL +VI A + RI +DL P A + R L+ AE Sbjct: 533 PGNVRELRNVIMRAAAVASGARIEPADLRLGPARPAAAPARPAAPSPAVERPPQPLAAAE 592 Query: 591 ---VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E+E ++ A +G I +A LG+ R TL+R++++ GI Sbjct: 593 GEGPEREELVAALDASGWNIARTAASLGVSRMTLYRRLRKFGI 635 >UniRef50_C8Q8H1 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pantoea sp. At-9b RepID=C8Q8H1_9ENTR Length = 616 Score = 610 bits (1573), Expect = e-173, Method: Composition-based stats. Identities = 141/632 (22%), Positives = 247/632 (39%), Gaps = 57/632 (9%) Query: 13 SPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 S + SW RC + ++ +A+ + Q LE ++ +AP Sbjct: 30 SDAVQASWLRCVNHHGLDPSRLQEARILPARQLREHCQQLEALRVVAQPGLEKLYQQIAP 89 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 L + D + G+ L G G +E + GTCA+ A + QA+ Sbjct: 90 AGYILLLADAQGVAVDYLGNANAEISLRRAGLFLGAQWSEALSGTCAVGTALATRQAITI 149 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE----VG 186 HF A PLFDS+G L + ++ + L L +A++ + Sbjct: 150 HQTDHFDATHIPLTCSAVPLFDSQGDLQAVLDISALTSPQPRSSQHLVLQLAQQQAQKIE 209 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L + L++ + + ++++D G L +N A L G Sbjct: 210 NAWLLHRHRHDWVLKLSRHPGWHDIEPEFLLAFDANGRLTGLNPAARHWL-SAHPQPLGL 268 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 ++ L P + Q + + + T+ P L Sbjct: 269 PLSALFPGPLEQLLSTPQLEDISGQQRFYAQ---------TVHPARPASTAGVTL----- 314 Query: 307 EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 S A + DPQ + + + +S +L+ GE G GK ++ Sbjct: 315 --------------SPKLAALSGGDPQLDQQLRRAGRLLDTSLHLLVQGETGSGKEYFAR 360 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFL 422 A H S+R GP+IAVNC + L E G + R ++ A GGTLFL Sbjct: 361 AFHQASQRRKGPFIAVNCAAIPASLLESELFGHLPGSFSGAGSKARPGLIQAAEGGTLFL 420 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + +E+Q+ LL+V+ + + + AR+ +D++V++ + L V F L Sbjct: 421 DEIGDMPLEMQTRLLRVLAEQEVLPIGARQPQKVDIRVLSASHHPLTQRVAAGLFREDLL 480 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 Y L I +PPLR R+ I L++ L + ++ A L+S WPGN E Sbjct: 481 YRLQGACIQLPPLRERQ-DINWLIDQMLA-------GQAQLSPPARHALLSYRWPGNLRE 532 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 L+ ++ ++G I + DLP+ L V+ E++A++ + Sbjct: 533 LHHALQYALAMCESGIIAMDDLPDTLRVTAPAQPVAVND----------EQDALLRQLRA 582 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + E + LGI R TL+R++++ GI + Sbjct: 583 ARWNMSETARQLGISRMTLYRRLQRLGIQLPE 614 >UniRef50_Q88QE8 Sigma-54 dependent transcriptional regulator n=21 Tax=Proteobacteria RepID=Q88QE8_PSEPK Length = 725 Score = 608 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 130/667 (19%), Positives = 238/667 (35%), Gaps = 67/667 (10%) Query: 13 SPLIATSWERCN-KLMKRETW-NVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 P IA SW RC P + R +L + + + ++ Sbjct: 81 DPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERLHQVLQIADHEMNSLHQQLSG 140 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 A+ + D IL+ P + G G +E GT + + QA+ Sbjct: 141 AGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSEAREGTNGIGTCLVERQALTI 200 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTA----ADLPLTLAIAREVG 186 ++HF+ A+P+FD G L + ++ + + L A+ + Sbjct: 201 HQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDVSRQSQFHTMALVNLSAKMIE 260 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + + + + +G++++D G + N A +L G+ Sbjct: 261 SCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRICAANQSALNLLGTVRGGVLGK 320 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV--ITLKPIIETQGTSFILLLH 304 + + Q ++ P+ + Sbjct: 321 PLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQVFASLRGQARAPVW----SVPAAQPR 376 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 P ++ L+ DP + + P+LL GE G GK Sbjct: 377 PAGEVEPLVCLL--------------DPALQNDFRRSVRVFERDVPLLLRGETGCGKEAF 422 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTL 420 +QA+H SER P++A+NC ++ + E G T G +L A GGTL Sbjct: 423 AQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEGMRGKLLQADGGTL 482 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 L++I + + LQ+ LL+V+++ + + +DV++++ T DL VEQ F Sbjct: 483 LLDEIGDMPLALQTRLLRVLEERQVVPIGG-EPQAVDVRIVSATHRDLLERVEQGSFRED 541 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGND 540 LYY L+ E+ +P +R R L++ LR + + I+ A L++ WPGN Sbjct: 542 LYYRLNGLEVALPAVRER-SDKAQLLDFLLRQ--ETQGQWIDIEPRARQALLAFNWPGNV 598 Query: 541 FELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA----------- 589 ++ +V+ L ++ RI +DLP + T V + Sbjct: 599 RQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEMEGEGVALVRGQA 658 Query: 590 ----------------------EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + E++A+ + + ++ LGI R TL+RK+++ Sbjct: 659 RSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLGISRNTLYRKLRK 718 Query: 628 HGIDAGQ 634 HGI G Sbjct: 719 HGITRGD 725 >UniRef50_A5G298 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5G298_ACICJ Length = 668 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 132/645 (20%), Positives = 236/645 (36%), Gaps = 34/645 (5%) Query: 11 GISPLIATSWERCNKLMKRETWNVP--HQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 G I +W RC + P G I LG+ + + Sbjct: 28 GREDYIEAAWRRCRDDYRLNPEAPPAAVHVGGAALRQIREEHALFERLGRVEMHRLLGQI 87 Query: 69 A--------PRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 + L + D +L D ++ A G E G Sbjct: 88 SQQVAQSATASRYVLMLTDADGTVLDVFTDAANAERARAANMMPGYMWDEQHAGVNGPGT 147 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC----PVEQTTAADLP 176 + ++ ++H+ A P++ + GRL G I C + Sbjct: 148 SLHDRRSRVVHREEHYFTRNSRMTCSAAPIWGANGRLLGAIDATCLDCDDSRAAQVPTIA 207 Query: 177 LTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL 236 L AR + L T+S ++ L+ D +++ D G ++ ++ +L Sbjct: 208 LVSMSARIIEQLHFTNSFRDCMIMRFHERPELVGLPYDSLLAVDSDGLIRAVDNSVPSML 267 Query: 237 RLDA-TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ 295 GR++ E+ + + + + + ++ P +T+ Sbjct: 268 GAAGYNTLVGRSVAEVFD---ISLDRLLEHAETQPFAIWPIAHGNDRHGYASVWPAKQTR 324 Query: 296 -GTSFILLLHPVEQMRQLMT-----SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 ++ R + Q + D + + Sbjct: 325 ARARAVVSARNALVERAPLRPPAEMRQRKPEPRELVALAGADRAMAHNVWRAERVMNRDI 384 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE- 405 +LL GE G GK ++AIH S R A P++A++C + + E G + T Sbjct: 385 NILLLGETGTGKDTFARAIHRASNRHAAPFVAMSCAAIPEQLIESELFGYETGAFTGARP 444 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G + AHGGTLFL++I + + +Q+ LL+++++ I L + P+D+KVI+ T Sbjct: 445 GGMRGKAVAAHGGTLFLDEIGDMPLSIQARLLRLLEEKEIVPLGSSTPTPVDIKVISATH 504 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 DL +V + F LYY L+ +T+P LR R L+ + + I Sbjct: 505 RDLEAMVARGEFRMDLYYRLNGLSLTMPALRQR-SDRQDLIETLCAEESE--GASISITP 561 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 A+ L+ WPGN EL + + ++ GRI V LP + T Sbjct: 562 AAMQALIEHDWPGNIRELRNTLRTALAFAEAGRIEVHHLPHMIVR---TMPAHGPVPPQP 618 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 L+ + E+E I+ A + RI ++ LGI R TL+RK+ ++G+ Sbjct: 619 LAEEDPERERIVAALERHHWRIAATASSLGISRNTLYRKLHRYGL 663 >UniRef50_A4SSX2 Dihydroxyacetone kinase operon regulator n=2 Tax=Aeromonas RepID=A4SSX2_AERS4 Length = 633 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 260/638 (40%), Positives = 384/638 (60%), Gaps = 14/638 (2%) Query: 5 FNNDGRGISPL---IATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 +D + + P + SW RC W+ PH A+G T S+ +RK+ +LT G+ AL Sbjct: 1 MPSDLQPLQPWPDYLQASWLRCAHQTSATLWHPPHSAKGQTLQSLRQRKRDLLTTGEMAL 60 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 ED +E+M R CAL + DE+ C+L+R G P TL +L+ALGF G + +EG IGT A++LA Sbjct: 61 EDLYEFMERRPCALLLTDESGCVLARTGHPGTLAELAALGFGPGAFFSEGRIGTNAINLA 120 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 A+ G + QHF Q L W CA+P+++S GR IAL C VE+ +A DL LT++ Sbjct: 121 ALEGVPLCVSGPQHFNQTLHPWHSCASPVYNSNGRQVAIIALICKVEEASAGDLALTVSA 180 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 RE+ +LL ++L+ E+ HL++L ALL+ MDDGV++WD QG L+++N AA LRLD Sbjct: 181 GRELAHLLQMETLMQESQHHLSELYALLDGMDDGVLAWDPQGRLRYLNGLAASRLRLDPA 240 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE----SQHQFIDAVITLKPIIETQGT 297 G+ + + L LP LQ AIK PL HVE T E + +FI+A+I+LKP+ +G Sbjct: 241 LCLGQPLEQHLLLPQRLQLAIKGQTPLSHVEVTLERLGAQEGEFINALISLKPLPGPEGV 300 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 SFI LLHPV+++R + L + + + + R+L+ + RQAA+S+ P+LL GE+ Sbjct: 301 SFIALLHPVDRLRAI--HHLRQTVPELSALVGESSAMRKLLRYARQAAQSTGPILLRGED 358 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 VGKA L++AIH SE+AAGP I +NC+ +A E +G D R + ELAHG Sbjct: 359 EVGKAQLAEAIHFGSEQAAGPLITLNCQALPSERMALELMGSDEAG--QERAGKFELAHG 416 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTL LE++E L+ +Q+ALLQ++K G I R D+ R++P+ V++IAT++A L LV++ F Sbjct: 417 GTLVLEQVECLSAPMQAALLQLLKTGRIQRFDSARILPLKVRIIATSSAPLEQLVQEGLF 476 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 RQL YAL A E+ +P LR R +P L++ +L + + + AL L++ WP Sbjct: 477 GRQLLYALQACELWLPGLRERAADLPGLISQQLGAQGRE--PVRQFSPAALDCLLAYPWP 534 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL S +E+ L + GRI LP + L+ AE+E++AI+ Sbjct: 535 GNLGELRSAVEHALLHAGQGRIPPEALPAAIRHGYQLVANEVVGQPL-LTLAELERQAIL 593 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 A G++ +M+ LGI RTTLWR++K GID + Sbjct: 594 RCAHACKGQVSQMAQHLGISRTTLWRRLKLLGIDPADY 631 >UniRef50_B1J8J4 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pseudomonas putida W619 RepID=B1J8J4_PSEPW Length = 637 Score = 605 bits (1561), Expect = e-171, Method: Composition-based stats. Identities = 141/642 (21%), Positives = 244/642 (38%), Gaps = 46/642 (7%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRET--WNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 F G P+IA SW R + +V + + +A L + + Sbjct: 20 HFAERGLIPEPVIAESWYRSINQHHLDPELRHVDNILSATEIRQHQAQHEAYLAIASQGV 79 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + A+ + D L P Q+ + G G E I GT + A Sbjct: 80 SGLARRVVDAGFAVLLSDADGITLDAR-LPADPQRYTRSGLIVGARWDESIAGTNGIGTA 138 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPV---EQTTAA-DLPL 177 GQA+ +HF + +P+FD+ +L G + C + L L Sbjct: 139 LACGQALTIHRQEHFLAANARLSCSVSPIFDAHNQLLGCLNATCLYNDGPKQAQHLTLQL 198 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA----- 232 AR + N + L + + + +++ DE G + N A Sbjct: 199 VTLYARLIENSHFRERYRDRLTLALKPRDEFSDLAAEQLLALDEGGRVIGANRAAFLAHT 258 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 ++L I +LL L + +P++ Sbjct: 259 GKLLGAPVEQLLHADIDQLLDLT--------------------RGGARGTQLRGQAQPLL 298 Query: 293 ETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 G +R + D Q ++ + R+ +L Sbjct: 299 LDVGLRVPAGYR---LLRATPPMPARAGHPGLEQLAGQDVQLQQDVRRLRKVLDKDIAIL 355 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGR 408 L GE G GK ++A+H S+R A P++A+NC ++ + E G T G Sbjct: 356 LNGETGTGKEAFARALHQVSQRHAKPFVALNCAAIPESLIESELFGYRAGSFTGASRKGM 415 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 +LE A+GGTLFL++I + LQ+ LL+V+ + + L A + +D++VI+ T DL Sbjct: 416 KGKLEQANGGTLFLDEIGDMPAHLQTRLLRVLAERELVPLGAETPVLLDIQVISATHQDL 475 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 ++ + RF LYY L + +P LR R L++ L L + L++ +A Sbjct: 476 QAMIGEKRFREDLYYRLCGMRMRLPALRER-SDRRELIDALLSGLSA--GSGLRLSAEAH 532 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L+ AWPGN +L + + ++ G I ++DLP L A A + Sbjct: 533 RCLLGHAWPGNVRQLLNALRQAVALAEGGVIELADLPRELLDSAA----PAQPAALEQQV 588 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +++ ++ + + + LGI R+TL+RKMK++GI Sbjct: 589 EDLQMRHLLEVLKRERWNMSAAAQALGISRSTLYRKMKRYGI 630 >UniRef50_C5CW42 GAF modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Proteobacteria RepID=C5CW42_VARPS Length = 648 Score = 604 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 155/648 (23%), Positives = 258/648 (39%), Gaps = 33/648 (5%) Query: 2 SGAFNNDGRGISPLIATSWERC-NKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQA 59 +G D + L+ SW RC + T P + ++ + L +A Sbjct: 17 TGTALADPA--ASLVHKSWARCVREHGLDPTKPSPARILPAQEVRAHQQQLEHFLRAARA 74 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 +ED + +A + + D + G+P QL G G E GTC + Sbjct: 75 GMEDIYRRVADLGYMVLLTDAEGITVDYIGNPAWDDQLRRAGLYLGADWNEAHAGTCGVG 134 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 I Q + +HF PLFD GRLT + ++ L Sbjct: 135 TCLIERQPMTCHQTEHFDATHIALTCTTAPLFDHSGRLTAILDVSALRSPEARESQHLVR 194 Query: 180 AI----AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV 235 + AR + + S L L++ + ++++DE G + N+ A + Sbjct: 195 HLVSIYARMIEDADFLRSFRGHWILRLGTAYGLVDVAGELMLAFDEGGTVVGANSGARQA 254 Query: 236 LRLDATASQGRAITELLTLP-AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 L A GR +++LL +P + + T L P + Sbjct: 255 L---AENPLGREVSQLLHIPMDAIWRLGNGGASAMPFAHTVLLPGGGEYHASLLAPRVRR 311 Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 + P +++ A + DDP ++L+ ++ VL+ Sbjct: 312 AAAPAPDIARPSDRL------------PPLARIAGDDPAMQQLLAQAQRLVDRGIHVLVE 359 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLS 410 GE G GK +L++A+H S RAA P++AVNC D+ + E G T G Sbjct: 360 GETGSGKEVLARAMHGASRRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAKGMKG 419 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 + A GTLFL++I + + LQ+ LL+V+ +G + L A +D+ V+A T +L+ Sbjct: 420 LIAQADRGTLFLDEIGDMPMALQTRLLRVLSEGEVLPLGAESPQRVDLAVVAATHRNLSA 479 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 LV RF LYY L + +PPLR R G L+ ++ D AL R Sbjct: 480 LVAAGRFREDLYYRLCGAVLKLPPLRAR-GDRRYLIEAMFNEEAAAMRPGARLSDAALQR 538 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA- 589 L++ AWPGN EL +V+ +G + DL ++ A + +++ + A Sbjct: 539 LLAHAWPGNLRELRNVLRLALALCADGTVGAQDLQLPAPSDSAAAAAVPSAPASAEAGAG 598 Query: 590 --EVE-KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 +E + + Q + +A LG+ R T++R MK+HGI Q Sbjct: 599 DGGLEGADELRALLQRHRWHVARAAAELGVCRATVYRHMKRHGIAPPQ 646 >UniRef50_C8Q755 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Pantoea sp. At-9b RepID=C8Q755_9ENTR Length = 661 Score = 601 bits (1551), Expect = e-170, Method: Composition-based stats. Identities = 218/653 (33%), Positives = 343/653 (52%), Gaps = 40/653 (6%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY 67 D I P + SW RC +L++ + W A+G+TF S+ R + ML + +ED +EY Sbjct: 27 DRPDIKPWLKESWLRCRRLLRHDHWPQQLYAKGITFESLCRNQSEMLNISSPIIEDIFEY 86 Query: 68 MAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + +CA+F+ DET C L P +L+ LG + Y EG++G A+S A + + Sbjct: 87 LDAPDCAIFVTDETGCTLKFYATPSMAIRLTPLGIRESIYWREGMMGNNAISSALLLHET 146 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA--CPVEQTTAADLPLTLAIAREV 185 + +HF + L + CA P+FDS L G + + E A L L +I +++ Sbjct: 147 LSIKGYEHFNRHLHPFEICAAPVFDSDSTLMGAVGVILLTGHESAPALGLALVHSIEQQI 206 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L TD +LAE+N+HL++++ALL+ +++GV++WD +G + ++N + + + + G Sbjct: 207 TAKLNTDLVLAESNQHLSEVHALLDGVEEGVLAWDNKGTILYLNINGSDLFGVKSEKILG 266 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLL 303 + I +++ LP + AI ++ E E FI I+LK + TS +I LL Sbjct: 267 KNIHDIIKLPQSILTAIAHNREVELFETAIEFGGAFISLAISLKIVKGPNNTSDRYIALL 326 Query: 304 HPVEQMRQLMTSQLG-KVSHTFAHM--PQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 HP++++R+L+ G TF + RR++ +QAA+ VLL GEEG+G Sbjct: 327 HPIDRIRELVHRHSGIGARLTFDDLDYVGTSNTIRRVVRLAQQAAKGRGSVLLHGEEGLG 386 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTL 420 K+ L+QAIHN SER P+I +NC+ ++ EF+GG +++ +S+ ELA GGTL Sbjct: 387 KSYLAQAIHNASERQDKPFITINCQAMPRETMSSEFLGGIVNGDKH-VISKFELAKGGTL 445 Query: 421 FLEKIEYLAVELQSA---------------LLQVIKQGVITRLDARRLIPIDVKVIATTT 465 LE +EYL E+Q+A LL +P+DV++I TT+ Sbjct: 446 LLENVEYLTTEVQTALLQLLKTGLLSKANQLL----------------VPLDVRLITTTS 489 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 D+ V++NRF R L Y L +F+I IPPLR R IP LV L+ + + L + + Sbjct: 490 VDINQYVDENRFRRHLLYELQSFDIHIPPLRERSEDIPPLVKRYLKIMSREVDKNLTLSE 549 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 DAL L AWPGN+ EL +V+E SD IRV D+P L A Sbjct: 550 DALQLLTRYAWPGNNRELRNVLERAFSYSDGAMIRVKDIPLTLLERVRDLATVAPSNGLH 609 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 S ++E++A+I AA G+ +++ L I RT+LWRK+K I +K R Sbjct: 610 -SLNDMERDALIKAAVQFQGKAIKITQALKISRTSLWRKLKAFNIHLEDYKTR 661 >UniRef50_B8G0V4 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0V4_DESHD Length = 657 Score = 600 bits (1549), Expect = e-170, Method: Composition-based stats. Identities = 145/635 (22%), Positives = 272/635 (42%), Gaps = 16/635 (2%) Query: 9 GRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED----A 64 G+ + SWE+C + V ++ M L L D Sbjct: 25 STGVREEVLASWEKCRERRLDAKTTVIKTLPTISEGEKL-PNPIMSFLRDDILPDITKLL 83 Query: 65 WEYMAP-RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 ++ + + ++ A + S+ G+ L+QL+ GT +E IGT A SL Sbjct: 84 YQLLQECQGALFWVYQRNAIVFSQRGNQDFLRQLNQHNIGIGTCLSEEYIGTTAFSLVDK 143 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + + +H+ +L +A D G I + P E T L + Sbjct: 144 PHEESWVIGHEHYLDLLTPYATYTYYQEDFYGHSYAFIIV--PKEAFTDGLLSYFRLFNK 201 Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + + E++ N L E+ ++ VI D G + N + ++ + ++ Sbjct: 202 ARESTIRCYRNSLESDLKSELFNQLSEARNEAVIFIDSFGKIVDANQKFSKWVNVEKAEL 261 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPI-IETQGTSFIL 301 + + +TE+L + ++ + E + V + +KPI + + T I+ Sbjct: 262 KDKELTEVLPEMQRILSCLETGKTITSEEIQLSKLPPHMQFVQMDVKPIESDKKITGLII 321 Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 +L + RQ M+ + +TF + + + AA SS V+L GE G GK Sbjct: 322 ILMDNKTFRQRMSKISNQAYYTFDQIIGESGALQEAKQRAMNAACSSSNVILSGESGTGK 381 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHG 417 L +QAIH S R GP++++NC +A E G T + G + + E A+ Sbjct: 382 ELFAQAIHKASPRREGPFVSINCAAIPTELIASELFGYVEGAFTGARKGGSMGKFEYANT 441 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GT+FL++I + + +Q+ LL+V+++ + R+ + P+DV++I T +L +V+ F Sbjct: 442 GTIFLDEIGEMPLHIQTILLRVLEERRVNRIGSNIATPVDVRLICATNRNLHKMVKDGSF 501 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY ++ I +PPLR R IP +V+ L + +++ + + +A L++ +W Sbjct: 502 RLDLYYRINVLHIHLPPLRERITDIPIIVDYYLDYFNRFLDKKVREVAPETMAFLINHSW 561 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV-EKEA 595 GN EL + IE ++ + + LP + F ++ S E EK+ Sbjct: 562 EGNLRELRNTIECGINNAMGKTLELEHLPRYFFEKEEKMFDDREGSLGHESVYEFEEKKK 621 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 ++ G ++ +GI R+TL+RK+K + + Sbjct: 622 MLALMIKFNGNKSAVAEEIGISRSTLYRKLKSYNL 656 >UniRef50_Q5VJD9 Sigma 54-dependent transcriptional factor n=1 Tax=Brachymonas petroleovorans RepID=Q5VJD9_9BURK Length = 667 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 156/637 (24%), Positives = 261/637 (40%), Gaps = 18/637 (2%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 +SGA G +S +I SW+R A+ + + A+L + Sbjct: 30 LSGAMPPQG-CVSEVIVESWQRSRDKRIDPGLPKAP-VNEACLANARKDRTALLEAARPV 87 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 L + E +A + + ++ IL G +++ G E +GT A+ + Sbjct: 88 LCEMEESLAEVGAMILLCSDSGVILHLGGASSVRDVGASINIVPGAVWDEDAVGTNAVGM 147 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTL 179 A + V+ +H+ + + W+ A+P+ D G+L G + L+ + L L Sbjct: 148 ALSLDRTVRIRNFEHYCEAVMPWSCVASPIHDPLDGQLIGVLDLSHCEQVFDDYARSLVL 207 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 A ++ + L L ET L DGV+ D QG L N A LR Sbjct: 208 ASSKRIEQALDCARLRGETMLIEAYLERSARQGSDGVLLLDRQGRLLRSNEHALEALRAY 267 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 R L Q + L+ Q Q ++ P + + Sbjct: 268 GVELTLRRGMAL-GGEWQAQGVWRAPAWLQPDWVRPIFQGQDYVGMLVRIPRLVRCAPAL 326 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + + + R+ + A PVLL GE G Sbjct: 327 VDGPREPTAFAPEFAPEPDALDPRLRG--HRGAAMRKAAMQAMRVAAVEVPVLLQGETGT 384 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELA 415 GK +++QAIH S+RA ++AVNC LA E G T G+ + E A Sbjct: 385 GKEIMAQAIHRASKRAGKAFVAVNCGAIPRELLASELFGYVEGAFTGARRGGQAGKFEQA 444 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL+++ L ++LQ LL++++ G + RL + + ++V+++A T DL +E+ Sbjct: 445 DGGTLFLDELGELPLDLQPYLLRILEDGKVVRLGSDKPRAVNVRIVAATNRDLRSAMEEG 504 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCA 535 F LY+ I +PPLR RR + ++N L + +R + A L Sbjct: 505 SFRSDLYFRFRV-GIHLPPLRERREDLDRYIDNALTEVAQRHGMVKTVSPALRAFLHGYD 563 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS-------F 588 +PGN EL+++IE +A+ SD + + LPEHL Q + A ++ S++ Sbjct: 564 FPGNLRELHNLIEQMAVMSDGSELDLEHLPEHLHAAQVSCAAPACEMAPSMAPSAAPGML 623 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 E+E I+ A ++ G + LGI RTTL+R++ Sbjct: 624 KEIEWRTIVEALRLEQGNRSRAARRLGISRTTLYRRL 660 >UniRef50_Q4ZVN8 Helix-turn-helix, Fis-type n=14 Tax=Gammaproteobacteria RepID=Q4ZVN8_PSEU2 Length = 617 Score = 593 bits (1530), Expect = e-168, Method: Composition-based stats. Identities = 145/624 (23%), Positives = 252/624 (40%), Gaps = 28/624 (4%) Query: 15 LIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLG-QAALEDAWEYMAPRE 72 +I SW RC +T Q G + + R ++ Q L ++ Sbjct: 13 IIQDSWTRCRDFGLSHQTRPSFGQLPGTEVSRLLERHHGLVQTTHQEVLPVYENILSNSS 72 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 C + + D +L G + ++ A GF G E GT A+ A +A+ Sbjct: 73 CLILLADRQGQLLKSWGAQRFVESSQAQGFMPGASWNERGTGTNAIGTALACEEAIHIEP 132 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 D+HF + A+P+FD+ R+ + ++ + L + +++ V N L+ D Sbjct: 133 DEHFLKANRFMTGSASPIFDADRRIIAVLDVSSDSFLPPSHTLGMVKMMSQSVENRLILD 192 Query: 193 SLLA-ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 N L+S G++ +DE G + N +A +L G +I L Sbjct: 193 QFRDSHFQLIFNTGLNNLDSQWAGLLIFDESGQILCANRRADTLLGTAPA---GASIETL 249 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 P + + +A P + A ++ Q + T KP+ LH V Q Sbjct: 250 FKCPILQLLSETEARPF-ALHAFGNNRFQCLLKRPTRKPLK----------LHCV----Q 294 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + + D + + + ++ P+L+ GE GVGK + +A+H Sbjct: 295 AAQVPAAPRNLDLQAISLGDAKVEKAVRQAQRLLEKDIPLLIHGETGVGKEVFVKALHQA 354 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEY 427 S RA+ P IAVNC + E G + T + G + + A GTLFL+++ Sbjct: 355 SARASQPLIAVNCAAIPADLVEAELFGYERGAFTGANQKGSIGLIRKADKGTLFLDEVGD 414 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + + +Q+ LL+V+++ + L + L P+D+++I+ T L V+ F + LYY + Sbjct: 415 MPMPVQARLLRVLQERCVQPLGSSELYPVDIRLISATNRGLRDQVQAGLFRQDLYYRISG 474 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 I +PPLR R AL+ + L WPGN +L SVI Sbjct: 475 LSIELPPLRERT-DKHALIQRIWERHRDAHQRA-GFSREVLELFEHHPWPGNLRQLNSVI 532 Query: 548 ENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE-KEAIINAAQVTGGR 606 + +D I LPE + D+ L T S E + Q GG Sbjct: 533 QVALALADEQPIGTDHLPEDFLLDAHADEECRVPLRTQESATRFHSSEDLGQLFQAAGGN 592 Query: 607 IQEMSALLGIGRTTLWRKMKQHGI 630 + +++ LG+ R TL++++++ I Sbjct: 593 VSQLAKRLGVSRNTLYKRLREQRI 616 >UniRef50_A8VUU9 Alanine dehydrogenase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VUU9_9BACI Length = 632 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 128/650 (19%), Positives = 238/650 (36%), Gaps = 61/650 (9%) Query: 8 DGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQAALEDAWE 66 D + I SW C + +L + L+ + Sbjct: 21 DETRLRKRIIESWTFCRSAGVDPYDGKGSTLLTFEELKEKKEHNQMLLEIALPYLQKLKK 80 Query: 67 YMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQ 126 L ++D +L+ G+P+T + + + F +G E +GT A+ A + + Sbjct: 81 LFKGSGSILLLIDPDGYVLNVTGEPETRRSANDINFVEGIRWTEEQVGTNAIGTAIRTCE 140 Query: 127 AVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQ-TTAADLPLTLAIAREV 185 + +HF + NW A P+ D GRL G + ++ V L A A + Sbjct: 141 PITVFGHEHFARASQNWVCSAAPIKDDHGRLLGVLDISSRVGTCEHVHTLGAVAASAYAM 200 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 + E + + D +I + + FI Sbjct: 201 EHEWQKRQKEDEFELISAAITG--QKATDPIILMNRDEEIVFI----------------- 241 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLK-PIIETQGTSFILLLH 304 A++ + + + +K P+ +G I Sbjct: 242 -------------DNALESLKEYRDTWISLKELEDATGCRTEMKLPVFSAKGGRIIGYQV 288 Query: 305 PVEQMRQLMTS-QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 V+ + + F + R ++ A++ PV L GE G GK + Sbjct: 289 SVQDTYANQSVVMQKRAPFHFEGITGTSSVFRNVLDQASCLAKADVPVHLSGETGTGKGM 348 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGT 419 +++A+H S RA GP+I +NC D+ +A E G T ++G + A GGT Sbjct: 349 MAKALHRNSPRANGPFIDINCGAVPDSLIASELFGYAPGAFTGALKSGYKGKFLEADGGT 408 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL+++ L+ +Q +LL+V+ + + L +V++I T DL LV + F Sbjct: 409 LFLDEVAELSPAMQVSLLKVLDDQSFMPVGSNVLHTCNVRIITATNRDLMTLVHEGTFRE 468 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 L+Y L+AF + +P LR R IPA +R + + + L WPGN Sbjct: 469 DLFYRLYAFPLRLPSLRERSEDIPA----FVRQYQIQHEWPVVWTRQLLEEWQRFTWPGN 524 Query: 540 DFELYSVIENLALSSDNGRIRVS---------------DLPEHLFTEQATDDVSATRLST 584 +L ++ L + + D+P+ + ++ + + Sbjct: 525 IRQLMLSLDRLRIYCPDRLPDPDTIRTIIGSASGERTGDMPKDVLQ--TSESRQSLGEAP 582 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 ++EK+ +++A Q GG G R+T +RK++++G+ + Sbjct: 583 LSYAEQLEKQTLMDALQAAGGARGRALERSGWSRSTFYRKLRKYGLHETK 632 >UniRef50_A5G9N8 GAF modulated sigma-54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G9N8_GEOUR Length = 653 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 141/660 (21%), Positives = 245/660 (37%), Gaps = 59/660 (8%) Query: 2 SGAFNNDGRGI--SPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQA 59 G F N+ + LI W RC + F ++ + Sbjct: 26 VGRFANEQLNVYEKKLITD-WSRCKTIGVDPGMRDGIVIPEDEFRIAVAHSSFIIEKAEP 84 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTL-QQLSALGFNDGTYCAEGIIGTCAL 118 L+ + L + D IL GD + +G+ E + GT + Sbjct: 85 ILQKVSNLLVGVPGILILTDNQGTILHIVGDSSVRMRAADESSLIEGSRWLESLAGTNGI 144 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPL 177 A +AV +++HF + W+ ATP+ D + G + + + L Sbjct: 145 GTAIAQKEAVHVFSNEHFCEGWHQWSCAATPILDPFTEEVLGVVDFTTFDKDYREDAVGL 204 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 T +++ + L L + + DG++ D G + + Sbjct: 205 TYSLSGHIKAELRLQLELERMQLIHSYSDHSSRYPADGIVVLDRMGRVVRSSP------G 258 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 +D +L + ++ P + + I G+ Sbjct: 259 IDPDEC------DLFQ-----RCRCEKEQPKMVQQVYLPGTEREI-------------GS 294 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 ++ + + S L + TF + ++ + S VLL GE Sbjct: 295 LLVIHRKKPVTISVPIESALIRCVATFGEFVTASENLKLIMERISKVIPSDINVLLIGET 354 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLE 413 G GK +++ IH S+R AGP++AVNC +F G + T + GR E Sbjct: 355 GTGKEIVANYIHAHSKRHAGPFVAVNCGAISKELFESKFFGYERGAFTGADPRGRKGVFE 414 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 A GGTLFL+++ + +E+Q+ALL+V++ G R+ + + I + +++A T L+ + Sbjct: 415 CADGGTLFLDEVGEMPLEIQAALLRVLETGRFNRVGSEKEIATNCRIVAATNRSLSHEIT 474 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + F LYY L IPPLR R IP L+ + SL ++ I ++A+ L Sbjct: 475 RGTFRADLYYRLGVATFDIPPLRERPEDIPVLIQRTMVSLCRKHDLPPSNISEEAMELLT 534 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD----------------- 575 +WPGN E+ +VIE+ + I V DLP ++ Q Sbjct: 535 GYSWPGNGREVRNVIESAMI-CGGSSISVQDLPMNIKYSQKLPQEAISVSGAHLTAAQGR 593 Query: 576 DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 +T + + ++ E II + I LG+ R T +RK K HGI + Sbjct: 594 SPDSTGYRINANISQREVHLIITTLEKYK-DIALACEALGVSRATFYRKCKAHGITPSDY 652 >UniRef50_C8W252 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W252_DESAS Length = 591 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 123/493 (24%), Positives = 216/493 (43%), Gaps = 27/493 (5%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + + + + +A+++ L + L N + L ++++ DG + + Sbjct: 105 LYIVNRTPILHDNKVVGAVGVAQDITELQQIANELNSVNEMKSTLETIIDTGHDGYLVVN 164 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 ++G + +N A ++ ++ + GR I E++ L + + + Sbjct: 165 KEGYVITLNKAYAELIDINPEDAIGRHIKEVIP-ETELHLVSQTGKTQIGEVLRVKGR-- 221 Query: 281 FIDAVITLKPI-IETQGTSFI--LLLHPV-------------EQMRQLMTSQLGKVSHTF 324 +AV+ PI + + + ++ V ++ + Q +T Sbjct: 222 --EAVVMRYPINKDGRIIGAVSKVMFRDVNQFITSAKTVYSSQRRIKGEPEQWASARYTV 279 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 ++ RL R+ A VL+ GE G GK LL+ ++H S R GP++ VNC Sbjct: 280 DNLIGKSHPMLRLKETVRRVALGPSTVLIRGESGTGKELLAHSLHVGSNRCLGPFVKVNC 339 Query: 385 ELYGDAALAEEFIGG---DRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + L E G T + G ++ + E A+GGT+FL++I + + +Q+ LL+V+ Sbjct: 340 AAVPENLLESELFGYVEGAFTGAKKGGQIGKFEQANGGTIFLDEIGDMPLLMQAKLLRVL 399 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ I RL R ++V+V+A T L ++ N F LYY L+ + IP LR R Sbjct: 400 QEKEIERLGDNRARHVEVRVVAATNRPLEQMIADNTFREDLYYRLNVVTLQIPSLRERID 459 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 + LV L F + + DAL + WPGN EL +V+E D I Sbjct: 460 DLKDLVEYFLAKYNHAFGLNITGLSADALELFENYNWPGNVRELENVVERAFNLVDGHII 519 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 V LP +L + S + S +VEKEAI +A VT G + + +LGI R Sbjct: 520 DVMHLPPYLQKFGKSKRHSINK-SLPSLLEQVEKEAIADALSVTNGNKMQAAKILGISRA 578 Query: 620 TLWRKMKQHGIDA 632 L++K+ Q+GI A Sbjct: 579 WLYKKIAQYGIKA 591 Score = 66.2 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 52/124 (41%), Gaps = 8/124 (6%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L ++ + VI+ D G + N R+ ++ A + GR ++E++ + L + +K + Sbjct: 35 VLNAIYNVVIAVDYSGKIIVYNHGCERLFKVPAEKAMGRFVSEVVPMTG-LLKVLKTGNS 93 Query: 268 LKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQ--LGKVSHTF 324 + ++ PI+ + + + + + +++Q+ + ++ T Sbjct: 94 HIGRKFV----QGNSLYIVNRTPILHDNKVVGAVGVAQDITELQQIANELNSVNEMKSTL 149 Query: 325 AHMP 328 + Sbjct: 150 ETII 153 >UniRef50_Q9F9U3 Sigma54-dependent transcriptional regulator AdhR n=1 Tax=Pseudomonas stutzeri RepID=Q9F9U3_PSEST Length = 634 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 154/624 (24%), Positives = 263/624 (42%), Gaps = 24/624 (3%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTF-ASIYRRKKAMLTLGQAALEDAWEYMAPR 71 S +IA SW+R + +A V I R + +L ++ +AP+ Sbjct: 20 SQVIARSWQRSQNYGLCPRDKLLFEAPLVASGKQIAERDRLLLDCAMPEMQQLHAALAPQ 79 Query: 72 ECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTM 131 + L +D +LS + + F G +E +GT A A ++V + Sbjct: 80 DWVLACIDLEGVVLSSLSGRGAGTRELSQVFRIGAQLSEQNVGTTAPGCALAERESVFFV 139 Query: 132 ADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLT 191 ++H+ + ++ ATP+F G + G + + + L AR + N L Sbjct: 140 GEEHYLEEARQFSCLATPIFGLDGGIVGVLDASSRQGAPSVYTLESLEFAARAIENRLF- 198 Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 L HL+ +L + +G++++D G L+ N A ++L L G EL Sbjct: 199 AQLGEVLLVHLHHRLDILGTPLEGLLAFDPAGKLRCANRIAGQLLHL-GEVRAGLDFAEL 257 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 +P ++ + + + P E R Sbjct: 258 FDMPFAHAACYRRHDLSAPLRLRSHHGGELHACITQGPPQRTAPTL--------AETPRP 309 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 T++ H+ + DP + + R+A PVL+ GE G GK + ++ +H Sbjct: 310 RRTAESLPAPHSGPCL--QDPALQDALARARKAFARDIPVLINGETGTGKEVFARLLHEG 367 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NENGRLSRLELAHGGTLFLEKIEY 427 S RA ++A+NC + + E G T + G + ++E AH GTLFL++I Sbjct: 368 SARAGEAFVAINCSSIPASLIESELFGHVEGAFTGSRKGGAIGKIEQAHKGTLFLDEIGD 427 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + +ELQ LL+V+++ ++RL + +LI +D +I T DL L + F LYY ++ Sbjct: 428 MPLELQGRLLRVLQERNLSRLGSNQLIKVDCALICATHRDLQQLSAEQGFREDLYYRING 487 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVI 547 +++P LR RR + AL+ + L E L++ AL L+ WPGN +LY + Sbjct: 488 LRVSLPALRERR-DLGALIQHLL-RAETTGQQSLQLSPAALQALLDYHWPGNIRQLYQCL 545 Query: 548 ENLALSS-DNGRIRVSDLPEHLF----TEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 A + D+G I V LP+ + + AT L + E AI A + Sbjct: 546 RLAAALAEDDGEIGVQHLPDEVRAGCGEQAATVAGEGLTLEAGSTLQLAEARAIRAAVEA 605 Query: 603 TGGRIQEMSALLGIGRTTLWRKMK 626 GG + + LGI R TL+RK+K Sbjct: 606 AGGNLSAAARSLGIARATLYRKLK 629 >UniRef50_B1J9J9 GAF modulated sigma54 specific transcriptional regulator, Fis family n=9 Tax=Proteobacteria RepID=B1J9J9_PSEPW Length = 639 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 138/637 (21%), Positives = 242/637 (37%), Gaps = 38/637 (5%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQA---QGVTFASIYRRKKAMLTLGQ 58 G + I SW R QG ++ + + ++ Sbjct: 29 EGELP--PGMLRDEIDASWRRSLGHGLDCLQGEQVGLGLEQGHDLRTLLEQNRLLVDAVT 86 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 L+ + + D A +L+ G L++ + G+ +E + GT A+ Sbjct: 87 PELDYLVSRQGKAG-IIILGDAQANVLAIEGQKHVLEREGLRDLHPGSCWSESLRGTNAI 145 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAA-DLPL 177 A + G+ +H+ L ++ + PL D G++ G + + L + Sbjct: 146 GTAVVEGRPTLINCGEHYLDRLSPFSCTSVPLRDPHGQVIGVLDITREGAMAQPQDSLSM 205 Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 + A + + + + + L S G+++ G + N A ++L+ Sbjct: 206 LMMAAGNIESRMFGLCHPEQMVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDNACQLLQ 265 Query: 238 LDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + GR ++LL + A + V+ + +F + L G Sbjct: 266 VPRQGLIGRRSSDLLGERSPAFIARLWQGAVSSVQTA---KGEFFFRALQLPRHSHLNGA 322 Query: 298 SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 S S + D + R + RQ + PVLL GE Sbjct: 323 SA------------PGKPAQANKSPALEALAGGDARLARNLRMARQGLGNGLPVLLLGET 370 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NENGRLSRLE 413 G GK ++++A+H S RA ++AVNC + + E G T G + RL Sbjct: 371 GTGKEVVARALHQASPRADKAFVAVNCAAIPEGLIESELFGYRDGAFTGSRRGGMVGRLM 430 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 AHGGTLFL++I + + LQ+ LL+V+++ + L A IDV +I T DL LV+ Sbjct: 431 QAHGGTLFLDEIGDMPLALQARLLRVLQERRVAPLGAGDEQEIDVALICATHRDLKRLVQ 490 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 LYY ++ + +P LR R + ++ L + +D A L + Sbjct: 491 DQHCREDLYYRVNGVSLRLPALRER-DDLALIIEGLLEKAGA---KAVSLDPALAALLAA 546 Query: 534 CAWPGNDFELYSVIENLALSSDNG--RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV 591 WPGN +L V+ ++G + + L + L E A+ + + + Sbjct: 547 FDWPGNIRQLEMVVRTALAMREDGEQVLTLDHLTDCLLDELASGSAPSG------NLKDT 600 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E E I NA G + + LGI R TL+RK+KQ Sbjct: 601 ELELIRNALARHHGNVSAAAEALGISRATLYRKLKQL 637 >UniRef50_Q2S6Z3 Transcriptional activator of acetoin/glycerol metabolism n=4 Tax=Gammaproteobacteria RepID=Q2S6Z3_HAHCH Length = 648 Score = 580 bits (1497), Expect = e-164, Method: Composition-based stats. Identities = 128/639 (20%), Positives = 243/639 (38%), Gaps = 37/639 (5%) Query: 13 SPLIATSWERCNKLMK-RETWNVPHQAQGVTFASIYRRKKAMLTLGQ-AALEDAWEYMAP 70 LI SW RC + + +++ + ++ Q L ++ Sbjct: 22 KELIEDSWRRCKEYGLTHNSVPQYGVLGRGGVSALLEEHQLLVNTTQKEVLPYYDHILSN 81 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 C + + D +L+ G+ + A G G E GT A+ A +G AV+ Sbjct: 82 SNCLIVLADRRGHVLNTWGEQRFTPLECAHGLVVGNRWTEMGAGTNAIGTAIATGAAVQV 141 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+HF + A P+F+++ + G + ++ L + + V N L+ Sbjct: 142 GRDEHFLRANRFMVGSAAPIFNTQKEMVGVLDISSDAYLPQDHTLGMVKLMTLSVENRLI 201 Query: 191 TDSLLAETNRHLNQLN-ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 ++ E N A LES G++ D +G + N +A +L A I Sbjct: 202 HNAFQREHLLITFNTNIAALESPWSGLVVIDVEGRIISANRRAEVML---AHDLALANIE 258 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 ++ + + P++ + +I P + Sbjct: 259 DIFNCKLRELRHHPEGMPMEVSAL----GKYRMHLMIKRPP---QAAIIAPDYRKKEKPA 311 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 ++ +L F + D + R+ + P+L+ GE G GK + +++H Sbjct: 312 PVIVEEELPDDVIPFHELEHGDERVARMAKQANRIMEKDIPILIHGETGSGKEIFVRSLH 371 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 S R A P +AVNC + E G + T G + + AH GTLFL++I Sbjct: 372 YHSSRKAFPLVAVNCAAIPAELVESELFGYEKGAFTGASNKGSIGLIRKAHRGTLFLDEI 431 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + +++Q+ LL+V+++ +T L + P+D+K+I+ T L V++ F LYY + Sbjct: 432 GEMPLKVQARLLRVLQERCVTPLGSTETFPVDIKLISATNRVLKEEVKRGAFREDLYYRI 491 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 + +PPLR R L+ L + + D L LV WPGN +L Sbjct: 492 SGLNLELPPLRER-ADKAKLIEYVHGRLTRSAGETYHPLSLDVLNMLVDHPWPGNVRQLI 550 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLS-----------------TSLS 587 S++ +D I +P+ + + ++ Sbjct: 551 SILSVALAMADGDPIEDWHIPDDFYDDLNGLGLAEHNGDGLSEGMDYVDHHNDGPILRNP 610 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E+E + I+ + GG + + + G+ R T+++ ++ Sbjct: 611 KEELEAK-IVRLYREYGGNVSQTAKAAGVSRNTVYKYIR 648 >UniRef50_A9BZJ5 GAF modulated sigma54 specific transcriptional regulator, Fis family n=10 Tax=cellular organisms RepID=A9BZJ5_DELAS Length = 673 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 146/646 (22%), Positives = 253/646 (39%), Gaps = 46/646 (7%) Query: 5 FNNDGRGISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALE 62 ++N G+ + SW RC + + + H + + ++ + + ALE Sbjct: 44 YSNRGQERDRAVLRSWRRCIDSHRLDPAHTSEAHIVTDGQLRAHREESEPLIHIARHALE 103 Query: 63 DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAA 122 ++ + + L + D + G L G G E GT A+ Sbjct: 104 RLYQQLKGLDYVLLLADRHGVAVDFLGHEADAGDLRRAGLYLGAQWREDHSGTSAVGACL 163 Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALA---CPVEQTTAA-DLPLT 178 +G+A+ HF + A P++D G L + L+ P E+ + L L Sbjct: 164 ETGEALTVHQSDHFDFTHTGLSCTAAPIYDMHGELAAVLDLSLLRSPAERASQNLALNLV 223 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 +A AR V L + L Q L+ D IS D +G ++ + AR+L Sbjct: 224 VAAARRVEQANLMAQSGQDWVVRLAQSPDFLDVDPDASISVDARGRIRAMTHAGARLLVA 283 Query: 239 D-------ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 G+ + + +++ P + Sbjct: 284 AAQLDWRQRHKLIGQPLERFFDVDLRHLPELRRHRPAQERIIRARDGSILF--------- 334 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + P ++R + + D + + L+ + A + P+ Sbjct: 335 -----AHAMEPQRPTRRLRAQAMPAQPPLPAALQALDTGDAKLQTLLRKAARLAPQTLPI 389 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRT----DNENG 407 L+ GE G GK L++A+H S R+ G ++A+NC +A L E G G Sbjct: 390 LVQGETGAGKEYLARALHASSGRS-GAFVAINCAAIPEALLESELFGYLPGTWTGGASKG 448 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 R + AH GTLFL++I + + LQ+ LL+V+ + IT L AR + V+VI+ + Sbjct: 449 REGLIAAAHEGTLFLDEIGDMPLALQAKLLRVLSESEITPLGARAPRAVSVRVISASHRP 508 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 LA LV + F L Y L+A E+ +P LR R + A+ + L +L + L + D A Sbjct: 509 LAELVRRGSFREDLLYRLNAAELQLPALRQR-SDLQAIADQMLATL----GSHLHLGDAA 563 Query: 528 LARLVSCAWPGNDFELYSVIENLALSS---DNGRIRVSDLPEHLFTEQATDDVSATRLST 584 A L + AWPGN EL++ + A +G I LP+ L A+ S Sbjct: 564 RALLAAHAWPGNLRELHNALRYAAALCGNDGDGSIEPDHLPDALHNAPPCTAALASNTSE 623 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +A+ G + E + LG+ R+T+ R+++Q + Sbjct: 624 PAA------QALEQMLAQCQGNVSEAARQLGVSRSTIHRRIQQLQL 663 >UniRef50_B5EP01 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EP01_ACIF5 Length = 697 Score = 579 bits (1493), Expect = e-163, Method: Composition-based stats. Identities = 138/655 (21%), Positives = 253/655 (38%), Gaps = 38/655 (5%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVP--HQAQGVTFASIYRRKKAMLTLGQAAL 61 ++ D + I +W+RC + + P + + + + +G A + Sbjct: 48 HYDTDPSMDNDYITHAWDRCTGQYRLDVNGAPELQRLDAGNLGRLLEEQHLFVEIGSAEM 107 Query: 62 EDAWEY---------MAPRECALFILDETACILSRNGDP-QTLQQLSALGFNDGTYCAEG 111 + + +C L +LD L G ++ + G + G E Sbjct: 108 TRLIKQTLRFSEDAMLPSPDCTLLLLDAGGVALHAVGTELESGRDARYSGMDAGFIWREE 167 Query: 112 IIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIAL----ACPV 167 +G SL + ++H + A CA P++ G L G I + Sbjct: 168 YVGVTGPSLCLHDMKPRMVHREEHLFRNFVEMACCAMPIWAPSGALLGVIDSTYSRSGYA 227 Query: 168 EQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQF 227 + + +PL +AR + + +N+LN + D+ + + +E G + Sbjct: 228 KSAYVSVMPLLAQLARRIEMKYFARNYQDHVILSVNRLNDYTDHDDEALFAINENGVIV- 286 Query: 228 INAQAARVL-----RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 A L G + ++ + H + + Sbjct: 287 ---AAEFALTKGTIGDAKGGLVGANLRDVFDVSLDKMLDDHHRAEKSHSRTLLRNTGRHD 343 Query: 283 DAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 + P + +L R + Q+ + + DD I Sbjct: 344 GLRVFSLPDKVSFTAVVNGILRNTPHSRDEASVQVHD---SLLALSGDDAVVSENIRRIH 400 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD-- 400 + + +LL GE G GK L++AIH S+R P++A+NC ++ + E G + Sbjct: 401 KVLNKNISILLLGETGTGKDTLARAIHRASDRRDKPFVAINCAAIPESLIESELFGYEPG 460 Query: 401 -RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T G+ ++ A+GGTLFL++I + LQ LL+V+++ +T L + P+D+ Sbjct: 461 SFTGASRVGKQGKVMAANGGTLFLDEIGDMPAALQGRLLRVLEEREVTPLGTTKASPVDI 520 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 +VI+ T + LV+Q F L Y ++ +++PPLR R LV + Sbjct: 521 RVISATNKSINDLVQQGGFRTDLLYRINDVVLSLPPLRER-SDKIRLVETICQQECGV-- 577 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS 578 + ++I + + +WPGN EL SVI SD IR DLPE L T + Sbjct: 578 SEMEISAEVWNIFLGYSWPGNIRELRSVIRTALALSDGNAIRCEDLPERLVTGERAGGRV 637 Query: 579 ATRLSTSLSF---AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 T +T+ + +E+ I+ + R+ + + L + R TL+RKM+ +GI Sbjct: 638 TTAPATTPPWSDSDALERNRILAELERHHWRVIDTAKFLKVSRNTLYRKMRLYGI 692 >UniRef50_Q659Z3 Putative regulatory protein IbgR n=5 Tax=Escherichia coli RepID=Q659Z3_ECOLX Length = 649 Score = 578 bits (1492), Expect = e-163, Method: Composition-based stats. Identities = 199/618 (32%), Positives = 336/618 (54%), Gaps = 14/618 (2%) Query: 15 LIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 ++ SW++C K WN+P +A G T +I+ R + + + Q +ED + A Sbjct: 36 VMLRSWQKCLKHCDPRHWNMPVKASGQTLQTIFSRNEEFIRISQRVVEDHFTLAGDDRLA 95 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 I+D +LS N QL LG G AE IGT SL + + + Sbjct: 96 FLIIDPHGWVLSLNAAGDYSSQLRELGIESGMSWAEDGIGTNVYSLCRETNLYTQLEGAE 155 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAA-DLPLTLAIAREVGNLLLTDS 193 HF + L +A A P+ D G + G + C +E T L + + A E+ N + ++ Sbjct: 156 HFSEQLHCYAMSAAPVIDYYGNIHG--YIVCIIETTAELVKLKTSYSCATEIANYIYIEN 213 Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 N+ L Q NA++E MDDG I W+ + +N+QA +L +D + G+ I + Sbjct: 214 EQKLINKVLCQHNAVIECMDDGFICWNSHSLITMVNSQAQTLLNIDKESLIGQNIRKGFV 273 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLM 313 P +L +AI Q + L + E + +FI+ ++TL+P+ + SF+L LHP++++R+++ Sbjct: 274 FPPILNEAITQRNKLSQKQIVLECRGEFIELMVTLRPLSDG---SFLLFLHPLDKIRKIV 330 Query: 314 TSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 Q+ + TF + ++++ R+A +S P+L+ GEEGVGK L+ AIHNES Sbjct: 331 QQQISTNANFTFDSLHAASGGMKQVLLIARRAIKSISPILINGEEGVGKLSLAMAIHNES 390 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 E+ GP+I+V+C++ + E +G D S+ ELAH GTL+L+K+EYL+ E+ Sbjct: 391 EQRDGPFISVDCQMLSPENILHELLGSD----VGPSPSKFELAHNGTLYLDKVEYLSGEV 446 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 QS LL+V+K G++TR D+ RLIP+ ++I T++ L V+Q FSRQLYY + EI I Sbjct: 447 QSVLLKVLKTGLVTRSDSHRLIPVRFRLITCTSSSLREYVQQGAFSRQLYYEISMNEIEI 506 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 PPLR RR + ++++ + ++R ++ I DA + L+ WPGN E + +E + + Sbjct: 507 PPLRKRREDLKQMIDDIIDKYQERTRKKMTITPDANSVLLEYRWPGNISEFKNRMEKVFI 566 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSA 612 + + + + ++P + ++ D L+ S AE+E +AI + +V + + + Sbjct: 567 NCNRLVLGLENIPLDIRQNNSSGDDDIPHLT---SLAELEMQAIEHTCRVCEWNLTKAAE 623 Query: 613 LLGIGRTTLWRKMKQHGI 630 +L IGRTTLWRK+K + + Sbjct: 624 VLKIGRTTLWRKLKIYNL 641 >UniRef50_D0I9V7 Sigma-54 dependent transcriptional regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V7_VIBHO Length = 625 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 130/639 (20%), Positives = 243/639 (38%), Gaps = 42/639 (6%) Query: 13 SPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQA-ALEDAWEYMAP 70 +I SW RC + + + + K ++ Q L + Sbjct: 9 DEVIEASWRRCRSFGLNPKSTPSIVRLNNGDWQDAQDKSKDLIVTTQEQVLPFYENILIN 68 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + D +LSR G P + Q+ + F GT E GT A+ A + ++V Sbjct: 69 SNSLVLLADSRGNLLSRWGRPGFINQMESHLFEQGTSWLERFNGTNAIGTALQTCESVVV 128 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+H+ A P+F+S+ L G + ++ T+ + + + V N L+ Sbjct: 129 ARDEHYLIANRYMTASAAPIFNSEQELVGVLNISSDAYLPTSHVNGMVKMMTQSVENQLI 188 Query: 191 TDSLLAETNRHLNQLNALLESMDD-------GVISWDEQGNLQFINAQAARVLRLDATAS 243 + L+ + + +D G++ ++ G + N +A ++ Sbjct: 189 MSTY------RLHYYTLVFNTSEDNHTSQWSGLLVFNHSGEIVAANRRADLLVG---HVL 239 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 +G I + + + A + L + + T ++ Sbjct: 240 KGLNIETVTGISPLKLSAHPENQTLS-FLGIANYRLFGMLKHPTATTFRVAHIPLSAPVI 298 Query: 304 HPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 V + S + + + D ++ I A S P+++ G G GK + Sbjct: 299 KSVSK-----PSLARNGARCLSELDLGDLNMQKAIRQAASVANSDIPLVIQGPTGAGKEV 353 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGT 419 ++A+H S RAA ++AVNC + E G T G + + A GGT Sbjct: 354 FAKAVHASSNRAAKKFVAVNCAAIPAELVESELFGYVKGAFTGASNKGSIGYIRQADGGT 413 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 L L++I + + +Q+ LL+V+++ +T L + P+D +VI+ T L V Q F Sbjct: 414 LLLDEIGDMPMHVQARLLRVLQEKSVTPLGSTESFPVDFRVISATHQPLRTSVAQKAFRE 473 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGN 539 LYY ++ + +P L R I +LV+ L L + + L WPGN Sbjct: 474 DLYYRINGLTLFLPALAERT-DITSLVDTLLPELAD--GKYPPVSREVLNLFKHHPWPGN 530 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE------- 592 +L + + SD I+ LP+ F + EVE Sbjct: 531 IRQLVNTLRVALALSDGHIIQSHHLPDDFFLDLKEASQIVQSTGEP----EVETLKVTSW 586 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +E++ +T G I ++ + G+ R T+++++K GI Sbjct: 587 RESLPELFAITEGNITRIAEISGVSRNTIYKRLKVLGIK 625 >UniRef50_A6TX18 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TX18_ALKMQ Length = 593 Score = 576 bits (1486), Expect = e-163, Method: Composition-based stats. Identities = 138/564 (24%), Positives = 240/564 (42%), Gaps = 34/564 (6%) Query: 98 SALGFNDGTYCAEGIIG-----TCALSLAAISGQAVKTMADQHFKQVLWN--------WA 144 L GT C + +G A G+++ + L +A Sbjct: 30 HHLNRIAGTGCYKEQVGEKVDENSAFGFVLRQGESLIIENPRQHDICLQCENVGNCMEYA 89 Query: 145 FCATPLFDSKGRLTGTIALACPVEQT-------TAADLPLTLAIAREVGNLLLTDSLLAE 197 P+ K ++ G I L E+ + +A + + ++ + Sbjct: 90 EVCCPI-KVKDQIVGVIGLIAFEEEQKTAMIGNQKNLMEFLNKMADLISSKVIEQESTDQ 148 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 + +L +L+S+D G+I+ D G + N +A + +L R I +LL Sbjct: 149 IKFLVKELETVLDSVDRGIIAVDGTGKIIHYNKRAIGLFKLSENEVCDRNIKDLLE-EFD 207 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQ 316 + K++ +K+ + + V PI ++ + + + ++ Sbjct: 208 VNLLFKKSRQVKNRAFVYRGKGDGFRGVFDANPIRIGSENFGIVFTFSNISDVLGIINDM 267 Query: 317 L-GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 G + F + + + G +AA+SS VL+ GE G GK L ++AIH S+R Sbjct: 268 TTGTMIMKFDDIIGESQLFNEVKIQGEKAAQSSSTVLIQGESGTGKELFARAIHFHSQRC 327 Query: 376 AGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVE 431 P+I +NC + L E G + T + G+ + ELA+GGT+FL++I + + Sbjct: 328 KKPFIPINCAAIPEQLLESELFGYEEGAFTGAKRGGKSGKFELANGGTIFLDEIGDMPLH 387 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 LQ+ LL+V+++ VI ++ + IPID ++IA T DL V + F + L+Y ++ + Sbjct: 388 LQTKLLRVLQEQVIEKVGGKDFIPIDARIIAATNKDLENRVLEGEFRQDLFYRINVIPLH 447 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENL 550 IPPLR R + LV+ L ++ ++ + +S WPGN EL + IE Sbjct: 448 IPPLRQRGEDLMILVSYLLNKCNEKLGKYIQEVHPGVFDVFMSYQWPGNVRELENTIEYA 507 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQE- 609 I DLP+ L Q + R S E+E++ +I A G Q Sbjct: 508 VNMCSGSIIMERDLPKRLSRRQTESKDESFRG--ITSIQELERKEMIKAIAYFGNTKQAI 565 Query: 610 --MSALLGIGRTTLWRKMKQHGID 631 + LGIGR TL+RK+K +GI Sbjct: 566 TMAATALGIGRATLYRKLKIYGIK 589 >UniRef50_Q3ACP6 Sigma-54 dependent transcriptional regulator n=4 Tax=Thermoanaerobacteraceae RepID=Q3ACP6_CARHZ Length = 630 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 204/464 (43%), Gaps = 18/464 (3%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 A+A + + Q+ +++ + DG+I+ D+ G + N A ++ + Sbjct: 172 EAVANALSEAFRLAEAIKSEKEKTEQIKTIVDFVHDGIIAVDKDGRISIYNKMAEKIFKK 231 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGT 297 + G+ + ++ L + IK P PI+ + Sbjct: 232 LPSEVIGKKVETVIP-NTRLYEVIKTGKPEIGKIQEISGT----MIATNRVPIVVGNEVV 286 Query: 298 SFILLLHPVEQMRQLMTSQLGK-------VSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 + V +++ + + S F + + + +++ ++ A Sbjct: 287 GAVATFQDVAEIQNMEQKIRRRLADKGLIASFKFDDIIFISDKMKDVVNQAKKYALLDST 346 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG 407 VL+ GE G GK L +Q+IHN SER GP++A+NC + L E G T G Sbjct: 347 VLILGETGTGKELFAQSIHNASERKNGPFVAINCAALPENLLESELFGYAEGAFTGARKG 406 Query: 408 -RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 + ELAH GT+FL++I + + LQS LL+VI++ + R+ RLIP+DV++I T Sbjct: 407 GKAGLFELAHKGTIFLDEIGEMPMGLQSKLLRVIQEKKVMRIGDDRLIPVDVRIICATNR 466 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDD 525 +L ++ + +F R L+Y + +I IP LR R+ I LV ++ ++ I Sbjct: 467 NLIEMINEGKFKRDLFYRISILQIHIPSLRERKEDIEVLVPYFIKKYSLICKKHIQGITS 526 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 + L +PGN EL S+IE + I V D+ + + + VS+ Sbjct: 527 RGMELLKKWDYPGNVRELESIIERACAICEGNIIDVRDIKLYNDQDSMENKVSSQSFLEI 586 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 E+EKE I + T G + E + LGI RTTLWRK+K Sbjct: 587 KPLDEIEKEYIKKVIKFTDGNLSEAAKKLGISRTTLWRKLKNFN 630 >UniRef50_Q89NZ8 Transcriptional regulatory protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89NZ8_BRAJA Length = 688 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 149/653 (22%), Positives = 249/653 (38%), Gaps = 42/653 (6%) Query: 3 GAFNNDGRGISPLIATSWERCNKLMKRET-WNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 G + + +I SW+R K + + +L Sbjct: 47 GDAKRESALVRGIIEESWQRSIKSGVNAHCRGSSFVTSPDDLYELRLKNDDLLGSSAQTF 106 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 E + L I D +L GD +T+ + G E + GT + A Sbjct: 107 RRVAEVLGDAATMLVITDRNGVVLDVGGDQRTIDAGHDIRLEVGAAWGETVTGTNGIGTA 166 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA-LACPVEQTTAADLPLTLA 180 ++G+ V A +HF + + W +P+ I + P ++ L + Sbjct: 167 LVTGKPVHVHAAEHFSEGIKAWTCVGSPIRSPIDGSIIGIIDFSGPQAIFHRHNVALAVI 226 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLE-SMDDGVISWDEQGNLQFINAQA----ARV 235 A + L L + + DGV+ D G + N A R+ Sbjct: 227 AANHIELALSEKIRLERIRLLEASICRMPGMGSADGVVILDRFGRVVHHNDMASARWRRI 286 Query: 236 LRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ 295 + S G I L + +L + + + P + E E I++ Sbjct: 287 TQ-SRELSIGSQI--LPSREGLLGEDLAEGLPEELREQRIEPL------------IVDGV 331 Query: 296 GTSFILLLHPVEQMRQLMTSQLGKVSHTF----AHMPQDDPQTRRLIHFGRQAARSSFPV 351 +L+L + + + ++ +AA + Sbjct: 332 VKGAMLVLASKPRTHPAASEMSPTARTALMSAKEAIVGCSEALLDVVQKVERAALGRTAI 391 Query: 352 LLCGEEGVGKALLSQAIHNESERAAG-PYIAVNCELYGDAALAEEFIGGD---RTDN-EN 406 LL GE GVGK L ++ +H S + P++A NC L E G T Sbjct: 392 LLEGETGVGKELFARLVHAASLKTGKEPFVAFNCGAVSKELLGGELFGHAPGAYTGATRE 451 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 GR R E A+GG L L++I + ++LQ LL+V+++ + RL + P+DV+++A+T Sbjct: 452 GRPGRFEFANGGVLSLDEIGEMPMDLQPYLLRVLEERAVYRLGDSKARPVDVRLVASTNR 511 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDD 525 +L V + RF + LY+ + + TIPPLR R G + L+++ R +ST L+ + Sbjct: 512 NLKQEVAEGRFRKDLYFRIGVVKFTIPPLRDRLGDVEILIDHFNRQFATIYSTQPLRFEA 571 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS------- 578 + L +WPGN EL ++IENL L + G + DLPE S Sbjct: 572 ATMELLRRYSWPGNVRELRNLIENLVLMTITGIVTPRDLPEDFVEVAPAQPPSISVQSEN 631 Query: 579 ---ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + F E+E+ AI A GG I + LG+ R TL+RK+ Q+ Sbjct: 632 SATGSESDEIARFDEMERRAIERAVANAGGNIAAAAEKLGLSRATLYRKLHQY 684 >UniRef50_B1JK03 GAF modulated sigma54 specific transcriptional regulator, Fis family n=7 Tax=Yersinia pseudotuberculosis RepID=B1JK03_YERPY Length = 614 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 128/623 (20%), Positives = 243/623 (39%), Gaps = 45/623 (7%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRE 72 + + SW R + + + A + + Q ++ E +A ++ Sbjct: 25 NQRLRDSWLRSQLYGLDRMSDDVPRIEQGELADLLVSHAVLQQFSQPTVKALAEKIADKQ 84 Query: 73 CALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMA 132 + + D + +L+ GD Q LQ+ G +E GT A+ A + + Sbjct: 85 SVVVLADASGLVLNTFGDIQALQKAQQFALTPGNLWSECSRGTNAIGTALAIDDSCEIYG 144 Query: 133 DQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTD 192 QH+ A PL G++ G + ++ P + L A+++ L + Sbjct: 145 HQHYLINNQGLYCAAMPLQAPNGQIAGVLDISGPAYHSHPHTLAWIKNAAKQIEYLWVKQ 204 Query: 193 SLL-AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 SL + L+ ++++++ ++ + + L N A L L A +L Sbjct: 205 SLHPDQWLMSLHPQIQGIDNIEELLLVFSDN-TLMAANRLAMHELALGADQFGALTFQQL 263 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQ 311 + + ++ + F + + F ++H Sbjct: 264 FPQSKQVANQVPHPLMARNQQRYFFR-------------LRAPARSHFPAIIHVPTTHVP 310 Query: 312 LMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + +S + DD + RL+ + + + GE G GK +S+A+H + Sbjct: 311 TTSVTSPDLSFSLRD---DDKKMVRLL-------NAGVSLCINGETGSGKEYVSRALHQQ 360 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEY 427 S G ++ +NC ++ + E G T +NG + ++ A GG LFL++I Sbjct: 361 SRWRQGKFVVINCAAIPESLIESELFGYQPGAFTGASKNGYIGKIREADGGVLFLDEIGD 420 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + + LQ+ LL+V+++ +T L + R P++ V+ T DL LV + F L Y L Sbjct: 421 MPLSLQTRLLRVLQEKEVTPLGSSRSWPVNFAVVCATHRDLPQLVAEGGFREDLLYRLQE 480 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGNDFELYS 545 F +TIPPLR PAL L+ + L L WPGN +L S Sbjct: 481 FSLTIPPLRE----WPALPAFILQLWRALGGEQRGILFTPALLDTLAKHPWPGNVRQLQS 536 Query: 546 VIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +++ L +D+ + LP++ E + + + +K+ I Q Sbjct: 537 LLKVLFALADDDEVLDCETLPDNFRGENSEPYP---------ALQQHDKQFIEKTLQYFN 587 Query: 605 GRIQEMSALLGIGRTTLWRKMKQ 627 G I + + LGI R+TL+R+ + Sbjct: 588 GNISKTAKALGIARSTLYRRAAR 610 >UniRef50_Q897M6 Transcriptional regulatory protein n=1 Tax=Clostridium tetani RepID=Q897M6_CLOTE Length = 567 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 115/465 (24%), Positives = 207/465 (44%), Gaps = 34/465 (7%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 L ++L L+ +LE DG++ D+ G + IN A L +D S G+ +TE Sbjct: 110 MYEELKAKEKNLKILSFILELAYDGLVVIDKYGYITMINKTYADFLGVDQERSIGKHVTE 169 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL---LLHPVE 307 ++ + K + ++ + P+IE + L ++ Sbjct: 170 VIE-STRMHIVAKTGIAETAQLQKVKGKY----MIANRIPVIENGELVAVAGKVLFKNIK 224 Query: 308 QMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 ++ L + S++F ++ + + ++AA+++ V Sbjct: 225 ELDLLYKKIRNIENEYKKYKGQFDESNSASYSFDNIIGKSDKINKTKDLAKKAAKTNSNV 284 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-G 407 L+ GE G GK L + AIH ESER G +I +NC L E G + T + G Sbjct: 285 LIRGESGTGKELFAHAIHMESERVYGNFIKLNCAAIPRDLLESELFGYEGGAFTGAKKEG 344 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 ++ + ELA GGT+FL++I + + +Q+ LL+V+++ + R+ A R IDV+VI+ T D Sbjct: 345 KIGKFELADGGTIFLDEIGDMPLHMQAKLLRVLQEREVERIGATRSKKIDVRVISATNRD 404 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDD 526 L ++++ F LYY L+ + IPPLR RR I L L + K+ + + Sbjct: 405 LEKMIKEGEFREDLYYRLNVVTVNIPPLRERREDIKILSEYLLEKISKKLGKKTKSFSKE 464 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 A++ L++ W G +L ++IE + N I P ++ + + + S + Sbjct: 465 AMSCLMNYKWEGGVRQLENIIERAVNLVEHNEMIEPKHFPGNIVSNKYIVEDS----DLN 520 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +VEK+ I+ + L I RT+L+ K+ +H I Sbjct: 521 KLINQVEKDIILETLIYCNWNKTLAAKKLNISRTSLYEKIAKHNI 565 >UniRef50_A5D421 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D421_PELTS Length = 597 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 118/505 (23%), Positives = 222/505 (43%), Gaps = 21/505 (4%) Query: 149 PLFDSKGRLTGTIALACPV-------EQTTAADLPLTLAIAREVGNLLLTDSLLAETNRH 201 P+ + + GTI+L + T + + +A + + ++ ++AE Sbjct: 95 PI-TVESEVIGTISLIAFDVAQKETLCKNTDSLIEFIGRMADLISSKVVEQEIMAERTVL 153 Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 N+L A+++++ +GV++ D G + N A R+ G+ L L Sbjct: 154 ANRLEAVVDAVGEGVMAVDRDGCITHFNRSAERIFGAKKEQVIGKDSKILFP-SLPLSSV 212 Query: 262 IKQAHPLKHVEATFESQHQFIDAVITLKPII--ETQGTSFILLLHPVEQMRQLMTSQLGK 319 ++ E + + + + T KPI Q + ++ ++L + Sbjct: 213 LQDGIGFNSKEVFINYEGRKLHLLSTAKPIKVKNGQVAGVVASFQDFKETQKLAYEIMNT 272 Query: 320 VS-HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 F + + ++ + S+ VL+ GE G GK + ++AIH+ P Sbjct: 273 HEMIGFDDIVGASKPLLEVKAKAKKISASNSNVLIVGESGTGKEIFARAIHSAGPYGHKP 332 Query: 379 YIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++A+NC + L E G + G+ + ELA+GGT+FL+++ +++ LQ+ Sbjct: 333 FVAINCGAMPENLLEIELFGYVEGAFSGARRGGKPGKFELANGGTIFLDEVGNMSLYLQT 392 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+K+ VI R+ R +P+++++IA T +DL V++N F LYY L + IPP Sbjct: 393 KLLRVLKERVIERVGGTRPVPVEIRIIAATNSDLQEKVQKNLFRDDLYYLLSVIPLVIPP 452 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R+ IP L++ ++ + +K D+A+ + WPGN EL +E Sbjct: 453 LRTRQEDIPLLLDFYMKRFNRLLGKDIKGFTDEAMEACIKYPWPGNVRELVYAVEYAVNL 512 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSA-TRLSTSLSFAEVEKEAIINAAQVTGGR---IQE 609 + I LP + L A++EKEAI A + G + Sbjct: 513 EEEPLISPESLPPAIREGARKRTRDGIAGGGQLLQLAQLEKEAITAALEQYGWSDEGKTK 572 Query: 610 MSALLGIGRTTLWRKMKQHGIDAGQ 634 + LGI R T++RK+++ + + Sbjct: 573 AARALGISRATIYRKIQKFKLSPPK 597 >UniRef50_A5VG28 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VG28_SPHWW Length = 584 Score = 571 bits (1473), Expect = e-161, Method: Composition-based stats. Identities = 152/605 (25%), Positives = 252/605 (41%), Gaps = 31/605 (5%) Query: 38 AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQL 97 A R + ++ + ++ ++ L LD + ++ GD + + Sbjct: 2 AAPGERRIATERGERLIRYAMPEMTRLYKAFHTQDWVLACLDVSGFVICSIGDAEGPCRE 61 Query: 98 SALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRL 157 F +G +E IGT A A + + A++HF + ++ A PLFD G L Sbjct: 62 LESLFRNGVSLSESAIGTGAPGCALVEQKPFIVHANEHFLDEIHGYSCAAVPLFDVNGDL 121 Query: 158 TGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVI 217 G + C + ++ AR + N +L D L + L+ LL + V+ Sbjct: 122 IGVLNATCRSGRDLSSVCEALRVAARAIENHMLLD-LPGALHVSLHYHPDLLRTPLAAVL 180 Query: 218 SWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES 277 ++ E G L N A ++L +A++ + +L AV + + + A P+ Sbjct: 181 AFSEHGQLLGGNQIARKLLGHTRSATEFDHMFDLPFARAVDELSGRNAEPI------VTD 234 Query: 278 QHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRL 337 I ++L + LL P + SH + M DP Sbjct: 235 TPAGIRVHLSLARHADDVMRVGKALLPPPS---------GKRSSHASSDMFCSDPALLDT 285 Query: 338 IHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFI 397 I + A PVLL GE G GK +L++ +H R GP++ VNC D + E Sbjct: 286 IGDAKLAFARDIPVLLTGETGTGKEVLARELHASGPRRNGPFVPVNCASIPDGLIEAELF 345 Query: 398 GG---DRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRL 453 G T G + E AHGGTLFL++I + + LQ+ LL+V+++ + + + Sbjct: 346 GYVEGAFTGARRGGAPGKFEQAHGGTLFLDEIGDMPLSLQARLLRVLQERAVMPVGGSKD 405 Query: 454 IPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS- 512 PID+ ++ T DL LV F LYY + +T+PPLR R + L+ + Sbjct: 406 RPIDISLVCATHRDLKALVATGEFREDLYYRIDGLCVTLPPLRER-ADLSELIGQIVDRE 464 Query: 513 LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTE 571 + R L + DDAL L S AWPGN +L ++ + I LPE + Sbjct: 465 IGDRL--TLSLSDDALECLRSFAWPGNIRQLSLILRRAIALAAGSALIAPRHLPEEMRQT 522 Query: 572 QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 ++ S E++A++ A G I + LG+GR TL+RKM+++ I+ Sbjct: 523 RSNVGREVA------SLERTERDAVLMALHQCAGNIAATARQLGVGRPTLYRKMRKYNIE 576 Query: 632 AGQFK 636 K Sbjct: 577 VQGVK 581 >UniRef50_B8F9P3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F9P3_DESAA Length = 699 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 130/554 (23%), Positives = 241/554 (43%), Gaps = 29/554 (5%) Query: 109 AEGIIGTCALSLAAISGQAVK-TMA---DQHF-KQVLWNWAFCATPLFDSKGRLTGTIAL 163 AEG++ C SLA +SG++V+ + F L K RL G + + Sbjct: 143 AEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFEDSQLIRIIRTGKAESTQKVRLGGKVYM 202 Query: 164 ACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQG 223 + A+ +++ L + L T R +L+A++ES DG+ D +G Sbjct: 203 TNRTPIFMGGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIESSFDGIYVTDGEG 262 Query: 224 NLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFID 283 +N R + G + EL+ + + + E+ + Sbjct: 263 RTLRVNKAYERTTGIRREDVVGHTMAELVEQGFFNESVSMRVLENRKGESLVQKVKTGKT 322 Query: 284 AVITLKPIIETQGTSFILL--LHPVEQMRQLMTS----------------QLGKVSHTFA 325 ++T PI + +G +++ + V ++ L QL + + Sbjct: 323 VMVTGTPIFDDKGEISLVVTNVRDVTELYNLQNELGRMEVLRTWYENELEQLRESAGAAP 382 Query: 326 HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCE 385 + + + + + AR VL+ GE GVGK + + IH S R P++ ++C Sbjct: 383 SVVIRSKKMKEVHELAMRLARVDATVLVQGESGVGKEIFADLIHTNSPRKDKPFVKISCA 442 Query: 386 LYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIK 441 + L E G + T + G+ E A GGT+FL++I + + LQ+ LL+V++ Sbjct: 443 AIPEQLLESELFGYEAGAFTGAKAKGKAGIFESADGGTIFLDEIGEMPLSLQAKLLRVLQ 502 Query: 442 QGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGS 501 I R+ A + +D++++A T DL+ +V + F LY+ L+ + IPPLR R+ + Sbjct: 503 DKKIMRVGANHSMDVDIRILAATNRDLSQMVHKGAFRNDLYFRLNVVPVVIPPLRERKEA 562 Query: 502 IPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRV 561 I + L +++ +I D L L WPGN EL + +E + + + I Sbjct: 563 IVNFAYHFLEKYNRKYGFAKQIAPDVLDILYDYDWPGNVRELENTVERMVVVTKGDVIEP 622 Query: 562 SDLPEHLFTEQATDDVSA-TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTT 620 +DLPE L + A S + +E+E + A + T G +++ LG+ ++T Sbjct: 623 ADLPEKLRIAPKSGLAHALGGGSLKSALEGLEREILQQALE-THGSTHKVAKALGVNQST 681 Query: 621 LWRKMKQHGIDAGQ 634 + RK++++GID + Sbjct: 682 VVRKLQRYGIDPKK 695 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 32/182 (17%) Query: 153 SKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESM 212 GR+ G ++ + EQ L + + +++ L+S+ Sbjct: 99 ESGRIIGVVSRSRVSEQIHKGSLSV------------------------MRRMSIFLDSI 134 Query: 213 DDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVE 272 + V++ D +G + F N A+V G+ I +L + L + I+ + Sbjct: 135 YNPVVAIDAEGLVIFCNKSLAKVSGKSVEEILGKPIGDLFE-DSQLIRIIRTGKAESTQK 193 Query: 273 ATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQLGKVSHT--FAHMPQ 329 + + PI + +L + ++ + + + + Sbjct: 194 VRLGGK----VYMTNRTPIFMGGRIVGATAVLQDISELEAISNELEHTRRISMELDAIIE 249 Query: 330 DD 331 Sbjct: 250 SS 251 >UniRef50_A5D2K0 Transcriptional regulator n=2 Tax=Clostridia RepID=A5D2K0_PELTS Length = 568 Score = 571 bits (1472), Expect = e-161, Method: Composition-based stats. Identities = 137/531 (25%), Positives = 235/531 (44%), Gaps = 38/531 (7%) Query: 130 TMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA-IAREVGNL 188 ++F +++ D TG + + Q L A A + + Sbjct: 51 VFVTENFCELVKFNN------LDVIIETTGVPEVQEKLRQIRGNSTALMEAQAANLMMAI 104 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 L L E R +L+A+L SM + + D G ++++N +R+ + G+ I Sbjct: 105 LKEKEELLEFKRIQGELSAILNSMQEAIEVADINGVIKYVNPAFSRITGIPEKERIGQNI 164 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 E A L +K + + + + +++ + + + Sbjct: 165 FEASPDGA-LATVLKTGKVVFGQRTKVGGSNADV-VSNSAPIVVDGKMEGAVCVFQHFTD 222 Query: 309 MRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + LM Q+ ++F + D P+ R+ I ++A+S+ VL Sbjct: 223 IMNLMEELKKSTTIIENLTDKLGQVTTSKYSFDDIIGDSPELRKCITLAEKSAQSNSTVL 282 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRL 409 + GE G GK LL+ AIH S R P+I VNC D L EF G T ++ Sbjct: 283 ILGESGTGKELLAHAIHAASMRRENPFIKVNCAAIPDTLLESEFFGYAKGAFTGAVKSKI 342 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 + ELAHGGT+FL++I + + LQ+ LL+V+++ R+ + I +DV+VIA T +L Sbjct: 343 GKFELAHGGTIFLDEIGDMNLLLQAKLLRVLQEMEFERVGGNQTIKVDVRVIAATNRNLR 402 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDAL 528 L+ Q RF LYY L+ EIT+PPLR R+ +PALV++ + SL ++ +K I DA Sbjct: 403 ELIRQGRFREDLYYRLNVVEITMPPLRARKEDLPALVSHLITSLNRKLGKNVKGISKDAE 462 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L S WPGN EL +VIE + +++D + + +H+ + + + + Sbjct: 463 EVLFSYDWPGNVRELENVIERVMVTADEEILTKKNFIQHVNQFRMSSERDVDLMP----I 518 Query: 589 AEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 ++E+ I A G + + L I TL+ K+K+ I +K Sbjct: 519 EQMEEMLIRKAISKFGNTVEGKRRAAQALNISLATLYNKLKK--IKVANYK 567 >UniRef50_A6VS90 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VS90_MARMS Length = 663 Score = 570 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 134/633 (21%), Positives = 253/633 (39%), Gaps = 25/633 (3%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQ-AALEDAWEYMAP 70 I SW RC + + T + + +++L + L ++ Sbjct: 25 KERIQASWYRCEQFGLDHSSRPDFATLPKGTLNDLIDQHRSLLETTENEVLPYYENILSN 84 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 C + + D +L+ G P+ S G G E +GT A+ A I+G+A++ Sbjct: 85 SACMIVLADRQGHVLNTWGQPRF-GSASQHGLVGGNQWTEMGVGTNAIGTALITGEAIQV 143 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 D+HF + A+P++++K L G + ++ + ++ V N L+ Sbjct: 144 GRDEHFLRANRFMVGSASPIYNTKNDLVGVLDISSDAYLPQDHTFGMVKLMSLSVENRLI 203 Query: 191 TDSLLAETNRHLNQLNAL-LESMDDGVISWDEQGNLQFINAQAARVLR-----LDATASQ 244 + E N + L+S G++ DE G + N +A VL L+ Sbjct: 204 FSAFQQEHFILSFNTNVVSLDSHWSGILVLDENGTIVSANRRAEVVLAQDLALLNINQIF 263 Query: 245 GRAITELLTLPAVL---QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 + E+ P L A+ + V + + D + Q + ++ Sbjct: 264 DIEMREIKHHPYSLPMKLIAMGRYQFYVKVIPPVQQIMRIPDFRQRADYVAPPQAEAIVM 323 Query: 302 -----LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + V++ + S + A + D + RL+ + P+L+ GE Sbjct: 324 NEKSPSVEKVKRQENVPISTIPDNVIPLAELQHGDERVARLVRQAHKIMEKDIPILIHGE 383 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRL 412 G GK + +++H S R+ +AVNC + E G + T + G + + Sbjct: 384 TGAGKEIFVRSLHYHSSRSKEMLVAVNCAAIPAELVESELFGYEKGAFTGAQNRGSIGLI 443 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 AH GTLFL++I + + +QS LL+V+++ V+T L + P+D+K+I+ T L V Sbjct: 444 RRAHHGTLFLDEIGEMPMAVQSRLLRVLQERVVTPLGSTEAFPVDIKLISATNRTLKDEV 503 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 ++ RF + LYY + I +P LR R L+ L ++ + L LV Sbjct: 504 KEGRFRQDLYYRISGLNIELPALRERT-DKAELIKYLHERL-RKEEPGPALSQAMLDLLV 561 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 + WPGN +L V++ +D + LP+ F + + + S + E Sbjct: 562 THPWPGNMRQLAHVLKVGMAMADEEELEEWHLPDDFFDDLDVMTQADDSVEGSSQREQEE 621 Query: 593 --KEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 ++ I G + + + G+ R T+++ Sbjct: 622 PLEQLIPRLLNEFKGNVSQTAKTAGVSRNTVYK 654 >UniRef50_B2TFZ7 GAF modulated sigma54 specific transcriptional regulator, Fis family n=25 Tax=Burkholderia RepID=B2TFZ7_BURPP Length = 666 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 133/649 (20%), Positives = 233/649 (35%), Gaps = 34/649 (5%) Query: 13 SPLIATSWERCNKLMKRETWNV--PHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 SP + +SW+R + + + V P + +++A L L + + Sbjct: 27 SPRLVSSWQRSFEQYRLDPGAVIGPRVLSSAELREVQGKEEAFLRASGQCLSRLHDMIRV 86 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + + + D + D G G+ +E GTC ++ + Sbjct: 87 ADYCVMLTDAHGVTIDYRIDRDRRSDFKHAGLYIGSCWSEREEGTCGVANVLTDLAPIIV 146 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE----VG 186 HF+ A P+F G + G + + L + R+ + Sbjct: 147 HKTDHFRAAFTTLTCSAAPIFAPTGEMIGVLDASAVQSPDNRDSQRLVFQLVRQSAGLIE 206 Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG- 245 + + + +E+ + +I++DE GNL N +A + A G Sbjct: 207 DGYFLNQTSQHWVLFGHSSRNFVEAQPEVLIAFDECGNLVAANRKARECI----PALNGP 262 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHP 305 R I ++ I + + + + L+ I T Sbjct: 263 RHIDDVFDTSGSHLHDIARTDAIVGLRLRATGTTLYARIRAPLRRISRAASTLNEGAARS 322 Query: 306 VEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + Q + +P+ + P+L+ GE GVGK + + Sbjct: 323 SQSASQNDLHLGALGRF----LHSAEPRIAHNAAVALRVMGKRLPILILGETGVGKEVFA 378 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLF 421 A+H+ R A P+IAVNC ++ + E G T G ++ AH GTLF Sbjct: 379 HAVHDSGARRARPFIAVNCGAIPESLIESELFGYAPGAFTGARSRGARGKIAQAHTGTLF 438 Query: 422 LEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQL 481 L++I + ++LQ+ LL+V+ +G +T L A + +D+ VI T DL +V F L Sbjct: 439 LDEIGDMPLDLQTRLLRVLAEGEVTPLGADAPVRVDIDVICATHRDLTQMVAAGTFREDL 498 Query: 482 YYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDF 541 YY L + IPPLR R I ++ + L +D RL AWPGN Sbjct: 499 YYRLSGASLPIPPLRER-ADIRDVIEAVFDEEAQMAGHVLTLDPQLAERLAGFAWPGNIR 557 Query: 542 ELYSVIENLALSSDNGRIRVSD--------LPEHLFTEQATDDVSATRLSTSLSFAEV-- 591 +L +V+ D+ R+ + L + A + + Sbjct: 558 QLRNVLRYACAICDSARVELRHVAPDMAALLAPEAVHKPALLRIDPHDGRQRDALQAPRQ 617 Query: 592 ----EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 E+ II+A R + LG+ R TL+R++ GI A + Sbjct: 618 DPREERARIIDALTRHQWRPNAAAQALGMSRATLYRRIASLGIVAPHRR 666 >UniRef50_Q3AAC4 Sigma-54 dependent transcriptional regulator n=2 Tax=Clostridia RepID=Q3AAC4_CARHZ Length = 516 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 124/473 (26%), Positives = 230/473 (48%), Gaps = 14/473 (2%) Query: 166 PVEQTTAADLPLTLAIAREVGNLLLTD-SLLAETNRHLNQLNALLESMDDGVISWDEQGN 224 +E+T L + + + +L + + QL A+L+++++G+I+ D G Sbjct: 44 EIEKTDKKTLKQIIDDLKNIPKVLKVHPIEIMPYEQKEQQLRAVLDTVNEGIIAIDSHGT 103 Query: 225 LQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 + N A + + G+ + +LL + + +K + E + + + Sbjct: 104 ISICNQSCAEIFGIPVERVIGQNVGKLLANDIPMLKTLKTGESYNNQEIIINVEGRRLHY 163 Query: 285 VITLKPIIE--TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGR 342 + + +PI + + +L P+ ++R+L+ + ++F + + R ++ + Sbjct: 164 LTSGRPIKDRLGNIVGVVAVLKPMSEVRELVYALTKPSLNSFNDIIYTSEKMRFVVEMAK 223 Query: 343 QAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG--- 399 + AR+ VL+ GE G GK L ++AIH ES R P++ +NC ++ L E G Sbjct: 224 KVARTDTTVLIRGESGTGKELFARAIHLESPRRTKPFVPLNCAAVPESLLESELFGYVEG 283 Query: 400 DRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDV 458 T + G + LE AH GTLFL++I L LQ+ LL+V+++G + R+ + IP+D+ Sbjct: 284 AFTGAKKGGKQGLLEFAHEGTLFLDEIAELPTHLQAKLLRVLQEGKVRRIGGQEEIPVDI 343 Query: 459 KVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS 518 ++IA T +L +V + +F LY+ L+ F + IPPLR R I L + L + KR Sbjct: 344 RIIAATNRNLEGMVREGKFREDLYFRLNVFPLQIPPLRERVEDIEVLTYHFLNTFAKRRG 403 Query: 519 TR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV 577 + +I ++AL +L + +WPGN EL +VIE +D+G I D+ + Sbjct: 404 IQYFEITENALNKLKAYSWPGNVRELQNVIERALTLADDGVIEAKDIILD-----NPQNT 458 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + +VEKE I A + I++ + LG+ TTL K+K+ + Sbjct: 459 YFVARTLEEAVNQVEKELIERALKQY-PSIRQAARSLGVTHTTLRNKIKKLKL 510 >UniRef50_A2SP83 Sigma-54 dependent transcriptional activator n=4 Tax=Burkholderiales RepID=A2SP83_METPP Length = 664 Score = 569 bits (1468), Expect = e-160, Method: Composition-based stats. Identities = 147/627 (23%), Positives = 254/627 (40%), Gaps = 40/627 (6%) Query: 20 WERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILD 79 W+RC+ L + F ++ +L ++D ++ + + + Sbjct: 56 WQRCSSLGVDVAMTKGRRLSDDEFRLRREAEQLLLETSVPIVQDVGHFLVDVPGIMILTE 115 Query: 80 ETACILSRNGDPQTLQQLS-ALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQ 138 T +L GDP ++ + G +G+ E GT + A GQ V A +HF + Sbjct: 116 RTGTVLHITGDPAVRERAAVQSGIVEGSQWNELTAGTNGMGTALAKGQPVHVFATEHFCE 175 Query: 139 VLWNWAFCATPLFDSKGR-LTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAE 197 +W+ A+P+FD+ G+ + G I L LT+++A + + L Sbjct: 176 GWHSWSCAASPIFDADGQTVLGIIDFTTIEADFRDQALGLTVSVANSIQARMALHRELER 235 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFI--NAQAARVLRLDATASQGRAITELLTLP 255 +A D +++ D G N + ++ R ++ Sbjct: 236 RRLLTAFSDAARHYPHDDMLALDHAGRPVMHTPNERCRQITE--------RWVSAGSDDT 287 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS 315 ++ I P S + V+ KP F + Q+ Sbjct: 288 VAVRTTIDVEAP--------NSGTRIGTIVLLAKP--SGYQRVFRTEFKGTTAIEQVGR- 336 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 F DP TRR+ ++ A + VL+ GE G GK LL++ +H S R Sbjct: 337 --------FGEFASRDPDTRRMFDDLQRIAAAEVNVLIIGETGTGKELLARQVHACSPRH 388 Query: 376 AGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLELAHGGTLFLEKIEYLAVE 431 PY+ VNC + + F G + + GR E A GGTLFL+++ L Sbjct: 389 NEPYLPVNCGAISEHLMESTFFGYVKGAFSGADPRGRAGYFESAKGGTLFLDEVGELPPA 448 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q ALL+V++ G R+ + I ++IA T +L L+ Q RF + LY+ L + T Sbjct: 449 MQVALLRVLEDGSFQRVGSCETIRASCRIIAATHRNLEELIAQGRFRQDLYFRLKVVQRT 508 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDALARLVSCAWPGNDFELYSVIENL 550 I PLR R I LV+ + ++ + +A L WPGN E+ + IE Sbjct: 509 IKPLRERPCDIDVLVDQFAEVMRRKHRLVAVNFTAEARDALKRYHWPGNAREVRNAIE-A 567 Query: 551 ALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS--LSFAEVEKEAIINAAQVTGGRIQ 608 AL +G I + LP + +D SA+ + S + E++ I+ + ++ Sbjct: 568 ALLCSDGDIGLECLPPEVLRRAEPEDRSASAVPIESMASVRDYERQIIVGMLRKYR-KVN 626 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAGQF 635 +++ LGI R+TL+RK + I+ +F Sbjct: 627 QVAQALGIARSTLYRKFAELNINQSEF 653 >UniRef50_B2A661 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A661_NATTJ Length = 577 Score = 567 bits (1463), Expect = e-160, Method: Composition-based stats. Identities = 129/529 (24%), Positives = 229/529 (43%), Gaps = 44/529 (8%) Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREV 185 ++ +T + F +P+F +G L G + + +++ Sbjct: 66 ESSQTFTTEKFVVNKKTLLTNRSPIFK-EGELIGALGI------------------FQDI 106 Query: 186 GNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQG 245 L LA+T ++L A++ES DG D +G IN+ R+ A G Sbjct: 107 SELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGAKAEEVVG 166 Query: 246 RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLL 303 R + EL + + K ++T P+ ++ G + + Sbjct: 167 RHMKELEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNV 226 Query: 304 HPVEQ-------------MRQLMTSQLGKVSHTF--AHMPQDDPQTRRLIHFGRQAARSS 348 + + + + +L ++ + +RL+ + A Sbjct: 227 RDISELLELKDELEKTQALTRHYKEKLTEMEEKLGEGEIVAKSKVKKRLLAQAARVAAFD 286 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN- 404 VL+ GE GVGK ++++ IH S R+ P+I +NC + L E G + T Sbjct: 287 STVLITGETGVGKEIVAKYIHQNSNRSEQPFIKINCGAIPENLLESELFGHEPGSFTGAS 346 Query: 405 ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 +NG+ + E+A+GGTL L++I L+ +LQ LL+ ++ ITR+ + +DVK+IA T Sbjct: 347 KNGKPGKFEIANGGTLLLDEIGELSKDLQVKLLRALQDQEITRIGGVKPRQLDVKIIACT 406 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID 524 DL +V Q F LYY L + IPPLR R IP L+ + +R +++ + Sbjct: 407 NRDLEEMVSQGEFREDLYYRLSVVPLYIPPLRERPDDIPFLIRHYIRKYNEKYGVNKGLS 466 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 AL LVS WPGN EL ++IE L + I SDLP+ + LS Sbjct: 467 SSALEELVSYNWPGNVRELENMIERLVIMVPENLIETSDLPQQIKESNVK---ILENLSL 523 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + +++EK + A + + +E + +LG+ ++T+ RK+ ++G++ Sbjct: 524 PDAVSKLEKRMLQKAMEQSN-NTREAAQILGVAQSTVVRKLDKYGLNYK 571 Score = 77.0 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 TN + L +L+S+ +G+I+ +++G + N A+ +L + G I E++ Sbjct: 2 TNLQNSDLEIILDSVYNGIIAINKEGEINLFNKSASEILGMSKEEVLGCDIREIIP-ETG 60 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS- 315 L + ++ + + + + PI E + + + + ++ + Sbjct: 61 LFKVLESSQTFTTEKFVVNKK----TLLTNRSPIFKEGELIGALGIFQDISELEHISQEL 116 Query: 316 -QLGKVSHTFAHMPQDD 331 + ++ + + Sbjct: 117 AKTKAINDELRAIIESS 133 >UniRef50_B1Y1U6 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1U6_LEPCP Length = 659 Score = 566 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 130/653 (19%), Positives = 248/653 (37%), Gaps = 29/653 (4%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQ 58 + G ++ + SW R E P + M Sbjct: 14 LEGKRPIQMPNVNAGLLASWMRSVTEHGLEPDRIQEPDVLTHAELLERRAPIEEMSAFSS 73 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 ++ +++++ + + D ++ + + SAL G+ +E GT + Sbjct: 74 PEIDRLYQHLSDHAQVVMLSDAQGVVIHFRSNSTVVDTCSALRVLPGSIWSEDKQGTTGV 133 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD---L 175 L + + + +HF L + P+F ++GRL G + + A Sbjct: 134 GLCLREQKPLSIVMAEHFATKLAGLSCTVAPIFGAEGRLVGVLNVTAMRSTDHALQGVVR 193 Query: 176 PLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV 235 + AR + N+ L++ + ++ + ++ D+ G + A R+ Sbjct: 194 EMVANSARRIENVFFDRRHARARILRLSRHDDFCDAAAEARLALDDNGRIIDATPPALRL 253 Query: 236 L-----RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 L GR ++ ++ + V + L+ T + I +T P Sbjct: 254 LTGSTLNDRPDVLIGRKLSSIVDVGNVERL-------LQEAAPTINGKQGCIHVRVTEPP 306 Query: 291 IIETQGTSFILLLHPVEQMRQLMTSQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARS 347 I +L ++ S G V+ T + D + ++ Sbjct: 307 RRAASRAPQIDMLSRASRLAASTLSTSGTRASVAPTLEEIVGSDTAMLDRLRIAQRLHAR 366 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN 404 P+LL GE G GK L++A+H + +G ++A+NC + E G T Sbjct: 367 CLPLLLQGESGCGKTQLARALHEDGPHRSGGFVAINCAAIPQELIESELFGHRSGAFTGA 426 Query: 405 -ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 + G RL A+ GTLFL++I + + LQ LLQV+ +G + A + + + +I+ Sbjct: 427 AKQGAPGRLLGANDGTLFLDEIGDMPLGLQGRLLQVLSEGEFVPVGATQPVKVRFALISA 486 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLK 522 T DL LV++ RF LYY L + +PPLR R + L+ + Sbjct: 487 TLRDLKSLVQEGRFREDLYYRLSGATLALPPLRERT-DLGQLIERAFARAALEAGIEESR 545 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH-LFTEQATDDVSATR 581 + A L+ WPGN EL V + A +D+ I + LP + A TR Sbjct: 546 LSQAARDVLLRHRWPGNIRELQHVAKFTAAINDSEVIGLDALPASLIEQADARHPAGQTR 605 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + + + ++ E ++++ + + + +A LGI R TL R++ + + + Sbjct: 606 PAATRTVSDAE--SLLDLMEQSHWNVSAAAARLGISRATLHRRLNEFDVHRPR 656 >UniRef50_A5D1E1 Transcriptional regulator n=3 Tax=Bacteria RepID=A5D1E1_PELTS Length = 507 Score = 564 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 121/469 (25%), Positives = 222/469 (47%), Gaps = 29/469 (6%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + E R ++L +LE+ DG+ D QG + +N+ R+ + G+ E++ Sbjct: 26 ILEARRFASELEQVLEASHDGIFITDGQGVILRVNSAWERICGISRDFVVGKNAQEMVDK 85 Query: 255 PAVLQQA----IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVEQ 308 + A +K + + + + + T P+++ +G ++ + + + Sbjct: 86 GFWSESAAICALKAKKEVTIMLKMTKGEKVGQKIMATGIPVMDDEGNIKRVVVNVRDITE 145 Query: 309 MR----QLMTSQLGKVSHT------------FAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 + QL +Q + + ++ P+T+R++ Q A+ VL Sbjct: 146 IVNLRDQLEETQQLNEKYAAELEQMRIQHVQYDNIVASSPKTKRVLDMAAQVAKVDSTVL 205 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GR 408 + GE GVGK +++ IH S R+ GP I +NC + L E G + T G+ Sbjct: 206 ITGESGVGKEIVANVIHCLSHRSKGPLIKINCGAIPENLLESELFGYEPGAFTGARKQGK 265 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 ELA GTLFL+++ L++ LQ LL+V++ + R+ + IP+DV+++A T DL Sbjct: 266 PGMFELAEKGTLFLDEVGELSLNLQVKLLRVLQDHEVLRVGGLKPIPVDVRIVAATNKDL 325 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 +V + +F LYY L+ I IPPLR RR IP L + L + K++ + D + Sbjct: 326 MEMVRKEKFRDDLYYRLNVVSIEIPPLRERREDIPLLALHFLEKINKKYGFNKRFAPDVI 385 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS--ATRLSTSL 586 RL + WPGN EL +VIE + + + + IR LP ++ + + + + Sbjct: 386 DRLSAYPWPGNIRELENVIERVMVMTKSDEIRTIHLPGNIKNLSSLQNDIMFSEIMPLKK 445 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 + VEK I A + G ++++ L + ++T+ RK+K++ + AGQ Sbjct: 446 AVEHVEKHLIEQALKKY-GSTRKVARALKVNQSTIVRKIKKYKLSAGQE 493 >UniRef50_B2A1V9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1V9_NATTJ Length = 585 Score = 563 bits (1451), Expect = e-159, Method: Composition-based stats. Identities = 114/486 (23%), Positives = 217/486 (44%), Gaps = 40/486 (8%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I ++ + + L+ N + +LE DG++ D G + N+ + + Sbjct: 101 IFEDISDSVKLKRELSNARSSANAMENVLEKAYDGIVMIDHNGIITKFNSAYQQFTGISE 160 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 + G+ +TE++ + + ++ P + + V T PI E + Sbjct: 161 QEALGKHVTEVIE-NTRMHKVLETGKPEIGEIQKI----KGCEMVATRVPIYEEGEIVGV 215 Query: 301 ---LLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFG 341 +L +++++ L +L + F ++ + Sbjct: 216 LGKVLFRDIKEVKALAERLDAATNELDYYKGEVRKLKGSKYNFENIVGSSKKIIEAKEMA 275 Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD- 400 + A++S VL+ GE G GK L + AIH+ S R G +I VNC + L E G + Sbjct: 276 KIASQSDSTVLIRGESGTGKELFAHAIHDGSLRRYGAFIRVNCAAIPENLLEAELFGYEK 335 Query: 401 --RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T + G+ + ELA+GGT+FL++I + ++Q LL+ +++ + R+ + R+I +D Sbjct: 336 GAFTGANKEGKPGKFELANGGTIFLDEIGDMPFDMQVKLLRALQEREVQRIGSERVIDLD 395 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 V++IA+T +L L+ Q++F LYY L+ F I +PPLR + + L+N ++ L Sbjct: 396 VRIIASTNRNLEQLIAQDKFREDLYYRLNVFNINVPPLREMKDDLEKLINFIIKDLNDEM 455 Query: 518 STRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF------- 569 + + +A L S WPGN EL +V+E + I +P++L Sbjct: 456 GLNVNGVSSEANKILNSYHWPGNIRELKNVLERSMNVAKGNIITKDCIPQYLLTWAGAEE 515 Query: 570 ----TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKM 625 + + +++ L E EK AI A + T ++ + LL I R+ L++K+ Sbjct: 516 QQNNSNSKSHEINLHNLELRSVVKEAEKLAIETALKQTNNNKKKAAELLNIHRSGLYKKL 575 Query: 626 KQHGID 631 +++ I Sbjct: 576 EEYNIS 581 >UniRef50_B8FWA2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FWA2_DESHD Length = 597 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 119/511 (23%), Positives = 223/511 (43%), Gaps = 38/511 (7%) Query: 147 ATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLN 206 + P+ + +G++ G + A V +++ +L T L + Sbjct: 98 SVPVLNKEGKVIGLLCKAKMVTTLFRHS-------EQDLTDLEHTAKELETVKALNETFD 150 Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAH 266 +L + DG++ DE+G + +N A L L G+ I E+++ + A Sbjct: 151 TVLNIIRDGIVVVDEKGKITLVNQAMADFLTLPPEEMIGKPIAEIMSSNQLHHVACTGLS 210 Query: 267 PLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTS-QLGKVSH 322 V + +++ PII+ G + + + ++L + + Sbjct: 211 QTSEVLTI-----RGKPLIVSNSPIIKGGKVVGAVGKAVFPHLAEAQELAEKVRCLEHKV 265 Query: 323 TF---------------AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 TF M + PQ ++L A S+ VL+ GE G GK ++ A Sbjct: 266 TFFQEELQKNRTAQDIMKDMVAESPQMKKLKDEISIVATSTSTVLITGESGTGKEGVAHA 325 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLE 423 IH S+R GP+I VNC ++ + E G T +NG+ R+E A GGTLFL+ Sbjct: 326 IHLGSDRGKGPFIKVNCASIPESLMESEMFGYVGGAFTGAAKNGKPGRIERADGGTLFLD 385 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + LQ+ LL+V++ I RL + I ++++++A T L+ + + F + LYY Sbjct: 386 EIGEMPLALQAKLLRVLQDREIERLGSTETIKVNIRILAATNKKLSNAIAKGEFRQDLYY 445 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFE 542 L+ + +PPLR R I L + + + I +A+A L+ +WPGN E Sbjct: 446 RLNVINLHLPPLRERLEDIEPLTHFFISKFNDILKANVSGITPNAMATLLQYSWPGNIRE 505 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS--LSFAEVEKEAIINAA 600 L +V+E + +G I + LP + + + + ++E++ I A Sbjct: 506 LENVVERAVNYTRSGLIELIHLPHQIISGNTALGQVMNKKTIRHQDRLGQIERDMIAAAL 565 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + GG + + LL + R+ L+ K+ ++ ++ Sbjct: 566 EKAGGNKTKAAKLLNLSRSRLYDKLNKYDLN 596 >UniRef50_B2A3R3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3R3_NATTJ Length = 541 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 115/502 (22%), Positives = 213/502 (42%), Gaps = 31/502 (6%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSL-LAETNRHLNQLNALLESMDDGVISWDE 221 L A + +E+ + D + L +L +L+++ +G+I+ D+ Sbjct: 40 LIYLKLDFAPAMKGALESAVKEIPGVRGIDEISLLPQEEKEQKLRGILDTIGEGIIALDK 99 Query: 222 QGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF 281 G + IN A ++L L +GR I ++L+ + + + + E Sbjct: 100 SGIITMINPSAEKILNLS-ENIEGRDIRDILSAELPILKTLSAGEDYDNKEIFVTLPGGK 158 Query: 282 IDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIH 339 + + +PI G + + + ++R+L+ +F + + I Sbjct: 159 SHYLTSGRPIKNDDGNTVGAVAAIKDINEVRKLVHRITHPTMLSFDDIIAESSIMNETIS 218 Query: 340 FGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG 399 F ++ A VLL GE G GK L ++AIH ES R P++ +NC + + E G Sbjct: 219 FAKKIAHGDSTVLLTGESGTGKELFARAIHMESPRKDCPFVPLNCAAIPETLMESELFGY 278 Query: 400 D---RTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIP 455 + T + G + ELA+ GT+FL++I L +LQ LL+V+++ + R+ + I Sbjct: 279 EEGAFTGAKKGGKHGLFELANKGTVFLDEIGNLNPQLQVKLLRVLQEREVRRIGGKEEIS 338 Query: 456 IDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEK 515 +D++VI T +L LV + F LYY L+ I +PPLR R+ I L N+ L + Sbjct: 339 VDIRVITATNHNLEKLVNEGYFREDLYYRLNVIPIKLPPLRNRKEDIIPLANHILGQMRT 398 Query: 516 RFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDL----------- 564 + ++ + L + +WPGN EL ++IE +++ I L Sbjct: 399 NHGGQYQLSPKSRELLKTYSWPGNVRELENIIERAVNLANDNIIEGEHLFFGQEDGFSNY 458 Query: 565 ---------PEHLFTEQATDDVSATRLSTSLS--FAEVEKEAIINAAQVTGGRIQEMSAL 613 + Q+ ++S S VEK+ + ++ + Sbjct: 459 EGEMENWEQNQQYQNGQSEAEISVNYKDKDFSQILQSVEKQILQKVLSEHA-SARKAAKQ 517 Query: 614 LGIGRTTLWRKMKQHGIDAGQF 635 LG+ TT+ K+K++G+ Q Sbjct: 518 LGVSHTTILNKIKKYGLQINQE 539 >UniRef50_C8VXU8 Putative sigma54 specific transcriptional regulator n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VXU8_DESAS Length = 710 Score = 559 bits (1442), Expect = e-157, Method: Composition-based stats. Identities = 110/493 (22%), Positives = 210/493 (42%), Gaps = 26/493 (5%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 ++ + +A+ +++ L L +L+A++ES DG+ D + Sbjct: 202 ISNRSPIKKDGKIIGAVAVLQDISELDKMSKELCYVKELNEELDAIVESSFDGLFITDGK 261 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + N + +DA G ++ ++ + + K ++ Sbjct: 262 GIILRYNKAFELLTGIDAHEYLGLSVEDIRRDGIISEPVTCHVLEEKKSITIMQTSKTGK 321 Query: 283 DAVITLKPIIETQGTSFILL--LHPVEQ-------------MRQLMTSQLGKVSHTFAH- 326 + T P+I+ G ++ + + + + Q +QL + + + Sbjct: 322 LTLTTGNPVIDANGEIIRVVCNVRDITELNLLKHKLKKAQGLSQHYENQLRTLKLRYDNS 381 Query: 327 --MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + R L+ + A VL+ GE G GK L+++ IH+ S R P+I VNC Sbjct: 382 ENLVVTSAKMRNLLDMVVRLASVDSTVLITGESGTGKELIAEIIHSNSSRRDKPFIKVNC 441 Query: 385 ELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + L E G T + G+ +ELA GGTLFL++I + + LQ +L+ + Sbjct: 442 GAIPENLLESELFGYDGGAFTGAKKEGKSGYIELASGGTLFLDEIGEMPLNLQVKMLRFL 501 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + I R+ I +DV+++ T +L +V+Q +F LYY L+ + IPPLR R+ Sbjct: 502 QNKEIIRVGGTNYINVDVRIVTATNRNLLEMVQQKQFREDLYYRLNVVPVHIPPLRDRKD 561 Query: 501 SIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIR 560 IP L + + ++ KI + L+ WPGN EL ++IE + +++ + I Sbjct: 562 DIPPLAAHFIEVFNHKYKKNKKISPGVVDILMQYDWPGNIRELENLIERMVVTTMDDIIT 621 Query: 561 VSDLPEHLFTEQATDDV---SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIG 617 DLP +L + + + + VEK+ + A ++M+ L + Sbjct: 622 SEDLPSYLRDKVGISSSYIIVSGIVPLRDAVESVEKQLLERAYAKYR-TTRQMAKELKVD 680 Query: 618 RTTLWRKMKQHGI 630 +T+ RK ++ I Sbjct: 681 ASTVVRKAAKYCI 693 Score = 85.5 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 32/186 (17%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D KGR+ G + + + +L+ + Sbjct: 95 PVVDEKGRVVGI------------------------ITRGDIAKAFFNSYRNISLELDTI 130 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 + S + ++S DE+G ++ N AAR+L ++A A+ G+ I ++L + L I+ Sbjct: 131 MNSTHNAIVSVDEKGIIKVWNLSAARLLGIEAEAATGKNILDVL-STSNLMDVIETGKVE 189 Query: 269 KHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQ--LGKVSHTFA 325 + ++ + PI + + + +L + ++ ++ + +++ Sbjct: 190 TLKKVKLNDRY----FISNRSPIKKDGKIIGAVAVLQDISELDKMSKELCYVKELNEELD 245 Query: 326 HMPQDD 331 + + Sbjct: 246 AIVESS 251 >UniRef50_C0Z5U4 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z5U4_BREBN Length = 548 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 132/497 (26%), Positives = 209/497 (42%), Gaps = 47/497 (9%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 V L + + T L L+++M + V D + +Q N A + +D Sbjct: 53 MVEPYQLMTAFIVLTQNQSALLRTLMDTMSEAVTIVDSRNVVQHWNRAAETIYEIDRAQV 112 Query: 244 QGRAITELLTLPAV-LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFIL 301 G ++ E ++ L A++Q ++ V + +I PI E + I Sbjct: 113 VGTSLDEHFASESIRLLDALRQGTSVQRV---YHIPRPDSHVLINAAPIRREGEIIGAIS 169 Query: 302 LLHPVEQMRQLMTSQLGKVSH----------------TFAHMPQDDPQTRRLIHFGRQAA 345 + + ++ +L +H F + + I ++ A Sbjct: 170 IEQDITELVRLNEELAHTTAHLHNLQQEMSRFQAADDPFYAIKGHSASIQSAIGSAKKVA 229 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRT 402 ++ VL+ GE GVGK L +QAIH S R P+IA+NC A E G T Sbjct: 230 QTDATVLIYGESGVGKELFAQAIHQASRRHEKPFIAINCGAIPAALFESELFGYQGGAFT 289 Query: 403 DN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 + G+ +LELAHGGTLFL++I L +ELQ LL+ +++ R+ I ++ +++ Sbjct: 290 GAEKKGKPGKLELAHGGTLFLDEIGELPLELQVKLLRALQERQFYRVGGTEPITVNTRIV 349 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T L +V RF LYY L+ F + IPPLR RR +P LV + + Sbjct: 350 AATNRQLEQMVADGRFREDLYYRLNVFSLEIPPLRERREDLPELVQIFIHEYSVAHDQSV 409 Query: 522 -KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT 580 +I + + L WPGN +L +VIE L++ +NG I LP + + VS Sbjct: 410 PRISPEVMQALFEYTWPGNIRQLRNVIERLSILQENGVILPEHLPSVIRSHTEPTHVSLH 469 Query: 581 RLSTS---------------------LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 S EKE I+ A + T G + + LLG+ R Sbjct: 470 TPMGGTYAPPTTTPPPIIRPSIAIAYPSSPANEKERILAALERTYGNKKAAAELLGVSRG 529 Query: 620 TLWRKMKQHGIDAGQFK 636 TL+ KMK+ I+ FK Sbjct: 530 TLYNKMKKFNINEESFK 546 >UniRef50_A3JL03 Sigma-54 Specific Transcriptional Regulator containing GAF, and Fis DNA-binding domains n=3 Tax=Marinobacter RepID=A3JL03_9ALTE Length = 635 Score = 558 bits (1438), Expect = e-157, Method: Composition-based stats. Identities = 142/649 (21%), Positives = 255/649 (39%), Gaps = 41/649 (6%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRR--KKAMLTLGQAALED 63 N + L+ SW+RC + A G R + + + L Sbjct: 3 NTEHENGRSLVEQSWDRCIAWGLDHDFEPTPPAPGAAQVEELERQYHELLTSTEAEVLPY 62 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 ++ C + + + A +L GD + + F G+ E GT A+ A Sbjct: 63 YRNVLSSSRCLILLANRHATVLRSWGDERITEAQLKPWFQQGSNWREERCGTNAIGTAIA 122 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAR 183 + +AV+ ++HF ++ + A P+FD+ +L G +++ A L + +A+ Sbjct: 123 ANKAVQIQRNEHFLKLNRSMIGSAAPIFDAHKQLVGVLSVFSDAYLPQAHTLGMVRLLAQ 182 Query: 184 EVGNLLLTDSL-LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 V N LL L+ +S G++ D+ G + N +A ++L + Sbjct: 183 SVDNRLLKRQFERDHFMLTLSTTADNFDSPWSGILICDDLGRIVASNQRADQLL---SKT 239 Query: 243 SQGRAITELL--TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 + G + +L +L + A L S V ++P+ E Sbjct: 240 TVGDRLDDLFTTHRNHILGHPPQSALQLSTKNRVRLSAKIQRPTVAQVRPLDED------ 293 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 P+ RQ +Q F+ + D RR + PVL+ GE GVG Sbjct: 294 ----PLVITRQTKATQTHSAD--FSALEYGDATVRRCAEQSLKVLERGVPVLITGETGVG 347 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAH 416 K +L +A+H ++R +AVNC + E G + T G L + AH Sbjct: 348 KEVLVKALHQATQRKEQALVAVNCAAIPPELVESELFGYEAGAFTGARAQGSLGFIRKAH 407 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 G LFL++I + + QS LL+V+++ V+T + A I +D+ +I T A+ VE + Sbjct: 408 KGILFLDEIGEMPLSAQSRLLRVLQERVVTPVGATDSIAVDILLITATNRAPALHVESGQ 467 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 LYY ++ + +P LR R LV + + + LA L + W Sbjct: 468 LRADLYYRINGLCVELPALRDRT-DKHKLVQHIYSQYRDPVQSEA-LSPRILAALTNHPW 525 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD---------DVSATRLSTSLS 587 PGN +L +VI +D +++ LP + + +A + + Sbjct: 526 PGNIRQLVNVIRVAVAIADGEDLQIWHLPTDFLAQLDATATGNLSDVINAAAGESGSEAT 585 Query: 588 FAEVEK------EAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 F +++K + Q G I + L I R TL++++++ G+ Sbjct: 586 FGKLKKAAPEPLAHTLQVYQKCMGNISSAARELSISRNTLYKRLRELGM 634 >UniRef50_Q5P1R8 Probable transcription regulator protein n=2 Tax=Betaproteobacteria RepID=Q5P1R8_AZOSE Length = 618 Score = 557 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 145/620 (23%), Positives = 231/620 (37%), Gaps = 34/620 (5%) Query: 12 ISPLIATSWERCNKLMKRE-TWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYMAP 70 + I SW RC L W P + + L L + ++ ++ + Sbjct: 24 VPESILRSWRRCQGLGLDVGRWRPPSRLTESELSDRRDENADWLQLARPTIDALFDSVLD 83 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 L + D + IL G P L + + G E + GT A+ A + G A Sbjct: 84 DGHVLIVADRSGLILDEMGHPDFLDRAERVALMPGMDWREDVRGTNAIGTALVLGGAATV 143 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 +HF + + A + D +G+L G I ++ + A A R + L Sbjct: 144 RGGEHFLERNRQLSCTAQAIHDPQGQLLGVIDVSGQPRRLHDAHRLQVEAAVRHIEQRLF 203 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 L ALL + G + +D++G L+ N A L LD TA + Sbjct: 204 DRQTARLHELRLASEPALLATPRCGRLGFDDEGVLRAANRVALASLGLDRTALGRSRFVD 263 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 L H L + S + + + + R Sbjct: 264 LCGQSLE--------HWLSRHDTHVASLRHAGGVLSARLLLARPPAELAVPRRESSGRSR 315 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + ++ + M L+ R+ + PVLL GE GVGK QA+H Sbjct: 316 ETPSAGSANAAT---GMLGVGLP-AGLLDTARRLLDADIPVLLLGETGVGKERFVQALHA 371 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIE 426 R P +AVNC + + E G + T G RL A GG LFL++I Sbjct: 372 GCSRRGRPLVAVNCAAIPEGLIESELFGYEEGAFTGARRQGSKGRLREADGGVLFLDEIG 431 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + LQ+ LL+V+++ V+ L IDV+++A T DLA V RF LYY L Sbjct: 432 DMPASLQARLLRVLQERVVQPLGGGAGQRIDVRIVAATHRDLAHEVAGGRFRADLYYRLG 491 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 + + +PPLR R G + + L + + + A + WPGN +L ++ Sbjct: 492 HYPLRLPPLRER-GDVAQIAAALLADHGGA-QRGITLSPELAAFVRRYPWPGNLRQLDNL 549 Query: 547 IENLALSSDNGR-IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 + L D+G + + LP+ L + A A+ A GG Sbjct: 550 LCTLLALVDDGTLLTPTHLPDTLRDDAAPQAGGDA--------------ALQAALARHGG 595 Query: 606 RIQEMSALLGIGRTTLWRKM 625 + LGI R+TL+R++ Sbjct: 596 NASAAARALGISRSTLYRRL 615 >UniRef50_A4YW25 Putative sigma-54-dependent transcriptional regulator, HTH Fis-type family n=2 Tax=Bradyrhizobium RepID=A4YW25_BRASO Length = 633 Score = 556 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 126/642 (19%), Positives = 237/642 (36%), Gaps = 45/642 (7%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNV-PHQAQGVTFASIYRRKKAMLTLGQA 59 + G +S I SW RC + P +R + L A Sbjct: 17 LDDQDQPPGGQMSADIYDSWMRCITMGLDALRPPSPEFVDAAVLRQEQQRCSLVRGLALA 76 Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 + + +A + +L D A G+ E I GT L Sbjct: 77 EMHTLHQQIAGSNFMIAFATAEGLLLDIISDSSFSDASDAACIRAGSLWTESICGTNGLG 136 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 AA + + +HF N A P+F G + G + + A L Sbjct: 137 TAAFLKRPIVVHGREHFFARYNNLTCVAAPIFGPDGEVAGILDASSDCMSRQAHTQALVA 196 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RL 238 A ++ N L + + + L ++ G+++ D G + N A +L L Sbjct: 197 MAATQIENGLFREQHRGDILIAFHNRGEYLHTLSAGLLAVDNDGRILAANRAARVLLHGL 256 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 A GR ++ + + ++ + + G+ Sbjct: 257 PA--FAGRPFGDVFRG--RFSDFVDEGRRMERQR------------------LEDDVGSQ 294 Query: 299 FILLLHPVEQM---RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 F+ + Q ++++ + + A D + ++ AA P+L+ G Sbjct: 295 FVATIENSRQFPMTHRVVSPRPTPLKSPAAPFVSADQRIAAIVQRVAVAATRKMPILIRG 354 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSR 411 E G GK +++ H S R +G ++AVNC D+ + E G T + G Sbjct: 355 ETGTGKEQMARHAHAAS-RRSGAFVAVNCAALPDSLVEAELFGYTEGAFTGARKGGSAGL 413 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 + A GGTLFL++I + V LQ+ LL+ + + + +DV +++ T A+L Sbjct: 414 FKEADGGTLFLDEIGDMPVTLQAVLLRFLDDWTVRPVGGS-TREVDVLLVSATNANLDDA 472 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARL 531 + + RF L + L+ E+T+ PLR R + + + + + + + A+ RL Sbjct: 473 IAKGRFRSDLLFRLNTLEVTLLPLRER-NDFADIARHLMHKI----DPSIALSEAAIQRL 527 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATD-------DVSATRLST 584 +W GN EL + + L+LS I + + + ++ D +A Sbjct: 528 AQRSWDGNIRELRNALARLSLSETGLVIDAATVDAVIGADRPEGMAAKITVDRAAVEDGA 587 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E+++ +++ TG I + + LGI R T++R ++ Sbjct: 588 PADLHEIQRALVLSTYADTGNNISKTARRLGISRNTVYRALR 629 >UniRef50_B8FXH0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FXH0_DESHD Length = 703 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 110/483 (22%), Positives = 209/483 (43%), Gaps = 32/483 (6%) Query: 173 ADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 + +A+ +++ L L + + L A++E+ +G++ D+Q N+ +N Sbjct: 228 HKVLGAVAVFKDITELEEVSHRLNSNEKLMATLEAVVENSYEGMVVIDDQENIVLMNQFF 287 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 V+ + G+ I ++ + L Q +K + + D +I PI Sbjct: 288 LDVIGVKVQDVIGKKINDISP-NSSLPQTLKSGKAQFGETWHLKGR----DFIIMRVPIE 342 Query: 293 ETQ---GTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQ 333 G L +E + + F + + P+ Sbjct: 343 REGKVVGALAKTLFKNMEIAKMFAKKVMRLEENLAYYKEELGKFHSSQFVFDDIIGESPR 402 Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 ++ +A++++ +L+ GE G GK + S AIH S R+ GPYI VNC + L Sbjct: 403 MKKAKSLAHRASQTTSTILILGESGTGKEVFSHAIHKSSIRSNGPYIKVNCAALPEDLLE 462 Query: 394 EEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G T + G+ + ELA GT+FL++I +++ +Q+ LL+V+++ + RL Sbjct: 463 SELFGYDEGAFTGARKGGKPGKFELADKGTIFLDEIGDMSLGMQAKLLRVLQERELERLG 522 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 I +DV++IA T DL +V +++F LYY L+ I +PPLR R+ I + Sbjct: 523 GTEPIKVDVRIIAATNRDLHKMVMEHKFRLDLYYRLNVLTIDLPPLRERKEDIGFIARGL 582 Query: 510 LRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL 568 + + KR T ++ + +++ L + WPGN EL +++E + D I L Sbjct: 583 IEKINKRLGTDIQGVRPESITHLCAYDWPGNIRELENILERAIVICDEAWILPKHLA--- 639 Query: 569 FTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 + + E+E + + G + + +LGI R+ L++K+ ++ Sbjct: 640 LPGVMETITLGAEQTLEYALQAAEREILDKTLRRVQGNKVQAARILGIHRSVLYKKLAKY 699 Query: 629 GID 631 I Sbjct: 700 NIQ 702 Score = 76.2 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 60/147 (40%), Gaps = 9/147 (6%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 NL L LL + + +++Q +E++ + V++ D QG + F N A ++L A G+ Sbjct: 128 NLFLLYQLLNDLDFYISQ---TIEAVHNAVVAIDAQGRIVFFNPSAEKLLGFHAEEVLGK 184 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 I ++ +A+ L+ + ++ + D + I+ + + + + Sbjct: 185 PIKNFFP-DSLTFKALATGEELRGIPMSYGELNTKADFL---PIILGHKVLGAVAVFKDI 240 Query: 307 EQMRQLMTSQLGKVSH--TFAHMPQDD 331 ++ ++ T + ++ Sbjct: 241 TELEEVSHRLNSNEKLMATLEAVVENS 267 >UniRef50_C6HY50 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HY50_9BACT Length = 477 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 124/434 (28%), Positives = 207/434 (47%), Gaps = 14/434 (3%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI-----TELLTLPAVLQQAI 262 +L+S+++GVI+ + ++N A +L L G + + + ++++ I Sbjct: 43 ILDSLEEGVIAIGLDKKVLYLNRAAREMLGLSQGEVFGMDCQKAMRSSVCSARCLIEKTI 102 Query: 263 KQAHPLKHVEATF---ESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGK 319 + P ++ E + + + + L + + + H V Q+ +L G Sbjct: 103 ESGEPYRNYEISLTDRHRRTRLVRVNTALLKDADGHVVGGVEIFHDVTQLAELKKELKG- 161 Query: 320 VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPY 379 + F + + R L A+S VL+ GE G GK L++ AIH S R GP+ Sbjct: 162 -RYAFGKIIGQSEKMRELFDLLPVVAQSKSTVLIEGESGTGKELIAHAIHENSPRKDGPF 220 Query: 380 IAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSAL 436 I VNC + L E G T + + R ELA GGTLFL++I ++ +Q L Sbjct: 221 IKVNCAALSEGVLESELFGHVRGAFTGAVSSKPGRFELASGGTLFLDEIGEISASMQVKL 280 Query: 437 LQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLR 496 L+V+++ R+ + + +DV+VIA T DL ++ F R LYY L + +PPLR Sbjct: 281 LRVLQEEEFERVGGTKTLKVDVRVIAATNRDLKAAIDAGTFRRDLYYRLRVVPLFLPPLR 340 Query: 497 MRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 RR IP L+++ L F + + +A L++ ++PGN EL ++IE+ L S Sbjct: 341 ERREDIPLLISSFLSRYNAEFGKNVVGLSQEAQNILMNHSYPGNIRELQNIIEHAVLLST 400 Query: 556 NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 I V +LP L + LS S + +E I A + T G + + + LLG Sbjct: 401 GRTIGVRELPRDLAPIPEESSFADVALSRSNALRTMEDVMIRKAVEKTQGNMSQAAKLLG 460 Query: 616 IGRTTLWRKMKQHG 629 IGR+TLWRK+++ G Sbjct: 461 IGRSTLWRKLREMG 474 >UniRef50_B3DWD7 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWD7_METI4 Length = 659 Score = 555 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 128/647 (19%), Positives = 250/647 (38%), Gaps = 31/647 (4%) Query: 6 NNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAW 65 NN + I SWERC + + + P G + + A L + Sbjct: 15 NNFQPRVRNEIQKSWERCKQKGVDISNHSPLLPAGEKYPCLDLDPFAFL---KPLFPLLR 71 Query: 66 EYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISG 125 +C + +++ + +G + L++ + G+ +E G A+ +A Sbjct: 72 MQAIDFDCLITLVNSDGIVTFVDGPERLLEKANLYKLVIGSNWSEKYCGCSAIGIAIEEK 131 Query: 126 QAVKTMADQHFKQVLWNWAFCATPLFDSK-GRLTGTIALACPVEQTTAADLPLTLAIARE 184 + + + +H+ L N + + + L + + + + + + Sbjct: 132 KPISVIGPEHYCASLHNIWCTSAVIHKPESNELFMALTMIGDI-AQNPIPISVAVTNTTL 190 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAA---RVLRLDAT 241 + L + L S + D G + + ++ R D Sbjct: 191 IETKLAKILYTDRVLLYNKFLEKKGISTSPAFLLIDSLGTILHCPEEIFDEFQITRYDPI 250 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 + + I + V + Q++ + +I LK I ++ + Sbjct: 251 LIKNKPKPHFAQGQFFESDVILGKIAVPAVIEPVQYQNRTVGYIIELKNIFSSEN--YKS 308 Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + L ++ + P I + AA++ PVLL GE G GK Sbjct: 309 SPSSSLSPKTLRGQTNTLAPYSSDSIVGKSPAFVAAIEEAKIAAQNDLPVLLLGETGTGK 368 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD-NENGRLSRLELAHG 417 + ++ IH S+R+ ++A+NC + E G + T + G+ + LAH Sbjct: 369 EVFAKYIHLNSKRSKETFLALNCAAIPKDLVVSELFGFEGGTFTGSAKEGKKGKFLLAHK 428 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L ++Q +LL+V+++ I + A+ +P+DV++IA T DL+ + F Sbjct: 429 GTLFLDEIGELPFDIQGSLLRVLEEFEIFPIGAKSPVPVDVRIIAATNQDLSTYCSKGLF 488 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID-DDALARLVSCAW 536 + L+Y L+ F I +PPLR R I L + + + + I +D + L W Sbjct: 489 RKDLFYRLNIFPIQLPPLRERDNDIELLFVHFVNEISSQLKFTYPIPFNDVIPFLYQYHW 548 Query: 537 PGNDFELYSVIENLAL-SSDNGRIRVSDLPEHLFT---------EQATDDVSATRLSTSL 586 PGN +L +V + I+ ++L E + + + + + S + Sbjct: 549 PGNVRKLRNVAYRFVVKLLHKNSIKTNNLSELIKSIIDINKECKQSNNNIIIGNIESLNT 608 Query: 587 SFAEVE------KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + + E E A + + G I + + LLGI RTTL+R +K+ Sbjct: 609 NNNDNEIGLNYKIEIFNRALEKSKGNISKAAKLLGIHRTTLYRYLKK 655 >UniRef50_A5EHS9 Putative sigma-54-dependent transcriptional regulator n=2 Tax=Bradyrhizobium RepID=A5EHS9_BRASB Length = 646 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 138/634 (21%), Positives = 241/634 (38%), Gaps = 23/634 (3%) Query: 4 AFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALED 63 + +A SW+R + + A+ + AL++ Sbjct: 15 ERGTLSGDVRSTVAASWQRSRQHSVTVDRAKAPLVAEAELFRQRAKHAALRQAARCALQN 74 Query: 64 AWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAI 123 + +++ + + D T I+ GD + + A+ G +E IGT A+ A Sbjct: 75 SRTFLSDAGSIMILTDPTGLIIDTQGDARVIDAGRAVHLEHGGRWSEADIGTNAIGAALA 134 Query: 124 SGQAVKTMADQHFKQVLWNWAFCATPLFDS-KGRLTGTIALACPVEQTTAADLPLTLAIA 182 V+ +HF + W A P+ D G L G + ++ P L L +A+ Sbjct: 135 DSCPVQIHGAEHFCTEVQRWTCAAVPVHDPSDGELLGVVDISGPASTFNPQSLALAVAVG 194 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 V ++L + + + + + I D +G + + R ++ + Sbjct: 195 HHVESVLAQLARQDKEQLLCDFIAKRASWATEECILLDRRGAILHATERGLRAMKDNGLN 254 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQH-QFIDAVITLKPIIETQGTSFIL 301 + G A T L A K L H + A++ + G + Sbjct: 255 TDGDAPTRFLKTVAFEDWPAKLKEILPHASFELVKNGSTGVGAIVVMHTRRRAPGERGAV 314 Query: 302 LLHPVEQMRQLMTSQLGKVSHTFAH--------MPQDDPQTRRLIHFGRQAARSSFPVLL 353 + + S + S A +DP ++ AA P+L+ Sbjct: 315 AIRGRDAALPAAPSHHAQASQPPATSAGNKRPRFVAEDPNVLAIVRRVESAAARKMPILI 374 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRL 409 GE G GK L++ H S R +G ++AVNC D+ + E G T G + Sbjct: 375 RGETGTGKEQLARHAHAAS-RRSGAFVAVNCAALPDSLIEAELFGYADGAFTGARSGGAI 433 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 ++ A GGTLFL++I + V LQ LL+++ + + +DV +++ T A L Sbjct: 434 GLVKEADGGTLFLDEIGDMPVALQGVLLRLLDDWTVRPVGGS-AFKVDVFLVSATNAALD 492 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 + + RF L Y L+ E+ +P LR R A+ L + I +ALA Sbjct: 493 KAIAEGRFRSDLLYRLNTLEVRLPRLRERC-DFDAIARQLLHKI----DPGCDITAEALA 547 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 RL S W GN EL +++ L L NG I + + + V A + S Sbjct: 548 RLASNHWHGNIRELGNMLARLTLGVSNGLIDEACVDAMI--GHVIGQVIARPPQDTGSLH 605 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 +V++ I+ T G + E + LG+ R T++R Sbjct: 606 DVQRARILMVYAETNGNVSETARRLGVSRNTIYR 639 >UniRef50_A6CUY8 Hypothetical sigma-54 dependent transcriptional regulator n=1 Tax=Vibrio shilonii AK1 RepID=A6CUY8_9VIBR Length = 594 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 139/627 (22%), Positives = 251/627 (40%), Gaps = 51/627 (8%) Query: 13 SPLIATSWERCNKLMKR-ETWNVPHQAQGVTFASIYRRKKAMLT-LGQAALEDAWEYMAP 70 I SW+R + H+ V + + ++ + + A + + Sbjct: 10 KAWIKDSWKRSIQAGLSSRHLPEDHRLSNVEVTERIDKHQTLINVIEKHAYPLFCQIFSR 69 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + L + D I+ G + ++L+ + + G EG+ GT A+ A + + V Sbjct: 70 TDSRLILADTNGAIVKTWGQKRFREKLTEIALDQGVLWDEGLKGTNAIGTALVEKRPVSI 129 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLL 190 + +HF + + A+P+F G L + + + A L + + + + LL Sbjct: 130 IGGEHFIRHHHFISCTASPIFSPAGELIAILDVTSEYQTHNDATRVLIQNMVQNIESELL 189 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 A L +++L S G++ D+ G + NA A Sbjct: 190 NFIPDAALKIRLGHDSSVLNSGWQGIVVTDKNGQVLAQNAIA------------------ 231 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 +VL +K P++ V + TL I +T F + V+ +R Sbjct: 232 ----SSVLANQLKPGDPIESVIGSL-----------TLDRIRKTDQ--FYYQVESVKPLR 274 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 L S + K + + Q D + + +++ GE G GK +A+H Sbjct: 275 HLPKS-ISKAESSSCPLHQGDSCVEKAWQQATKVMSKRIGLVISGETGTGKNEFVKALHK 333 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIE 426 +S AA P IA+NC + E G T G R A+GG LFL++I Sbjct: 334 QSSLAARPLIAINCGALPKDLIESELFGYAPGAFTGAHPKGFEGRFRQANGGILFLDEIA 393 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L + QS LL V+++ ++ + A R P+DV VI + +L +V + F L+Y L Sbjct: 394 DLPLNAQSRLLHVLQEKIVAPIGANRSYPVDVYVIVASHKNLTDMVAKGEFREDLWYRLE 453 Query: 487 AFEITIPPLRMRRGSIPALVN-NKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 IT+P +R R L+ + K+ ++ DD + ++ WPGN E++S Sbjct: 454 GLSITLPSVRER-EDTQQLIESTFTQESNKQ-----RLSDDVIDLMLKYDWPGNLREVHS 507 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGG 605 +A DN + + DLPE++ + T + ++ + T G Sbjct: 508 TCRLIAALCDNPIVNLDDLPENILRKLTTTRTATLEQDND--LQSTIDNKLLKTIEETNG 565 Query: 606 RIQEMSALLGIGRTTLWRKMKQHGIDA 632 + S +LG+ R T++RK+++ GID Sbjct: 566 NVSLASRILGVSRNTIYRKLRKLGIDK 592 >UniRef50_Q2RKJ6 Sigma54 specific transcriptional regulator with PAS sensor, Fis family n=2 Tax=Bacteria RepID=Q2RKJ6_MOOTA Length = 636 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 223/473 (47%), Gaps = 20/473 (4%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AI++ + + Q A+L+ +G+++ D++G + +N A ++L L Sbjct: 169 EAISQAIREAREVAMVRRRERARAEQFKAILDFAYEGIVATDQEGRITLVNPAAEKILGL 228 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 A GR E+L L Q ++ + A + I + Sbjct: 229 AAHRVVGRPAREVLP-GVPLNQVLQSGQK---RLGELHRAGNTLVAENIIPVIAGRETVG 284 Query: 299 FILLLHPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + V + RQ + + +TF + P ++I RQ A + V Sbjct: 285 AVATFQDVSHLQAVEARARQELYLKGHVARYTFEDIVTQSPVMAKIIERARQFAAAEATV 344 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENG 407 L+ GE G GK +++Q+IHN S R GP++AVNC + L E G + T + G Sbjct: 345 LINGETGTGKEMVAQSIHNASRRRNGPFVAVNCAAVPENLLESELFGYEEGAFTGARKGG 404 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + ELAHGGTLFL++I L++ LQ+ LL+V++Q I R+ R++P+DV++IA T + Sbjct: 405 KKGLFELAHGGTLFLDEIGELSLNLQARLLRVLQQKAIMRVGGDRVLPVDVRIIAATHRN 464 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDD 526 L + ++ F R LYY L+ +I +PPLR R +P L+ + + +R ++ Sbjct: 465 LKDAIARDAFRRDLYYRLNVLQINLPPLRERPEDLPLLIKALVEKISRRAGRLPPIFSEE 524 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 +AR+ + +WPGN EL +++E L + + DL + + +L+ Sbjct: 525 IIARMQAYSWPGNVRELENILERLVVLRSGEEVEAGDL-DEILEPAENQPQPVLQLALRG 583 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRRV 639 + AE+E E I +TG +E LG+ +TTLWR++K + +RRV Sbjct: 584 TLAEMEGEIIRRTLALTGNNKEETCRRLGLSKTTLWRRLKSWQ---DEGQRRV 633 >UniRef50_A6LYP8 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridiaceae RepID=A6LYP8_CLOB8 Length = 574 Score = 554 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 120/476 (25%), Positives = 215/476 (45%), Gaps = 34/476 (7%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 I V N L E LN ++E+ DG+I D+QG + I+ L + Sbjct: 107 IFSNVTNYSQLIHKLEEERDSKEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKR 166 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSF 299 + GR + E++ + ++ E + + + + PI + Sbjct: 167 EDAIGRHVNEVIE-NTRMPIVLETGKE----EVAQLHKIKGSYMIASRIPIVKNGEIIGV 221 Query: 300 I--LLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFG 341 + +L V+++ L + K +++ ++ + Sbjct: 222 VGKVLFRNVKELNSLYKRISVIEKELATYKSRFREFNKANYSLENIIGESEPIVMAKAIV 281 Query: 342 RQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD- 400 +AA ++ VL+ GE G GK + + AIH+ES R GP++ VNC L E G + Sbjct: 282 EKAAHTNSNVLILGESGTGKEIFAHAIHSESNRHEGPFVKVNCAAIPSDLLESELFGYEA 341 Query: 401 --RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPID 457 T + G++ + E+A+ GT+FL++I + + +Q LL+VI++ + ++ I+ Sbjct: 342 GAFTGAKKEGKIGKFEIANEGTIFLDEIGDMPLHMQVKLLRVIQEREVEKVGGVASKKIN 401 Query: 458 VKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRF 517 +++IA T +L LVE+ +F LYY L+ I IPPLR R I + N+ ++ L Sbjct: 402 IRIIAATNRNLERLVEEGKFREDLYYRLNVVTIEIPPLRERGNDIILISNHLIKKLSVDL 461 Query: 518 STRLK-IDDDALARLVSCAWPGNDFELYSVIENLA-LSSDNGRIRVSDLPEHLFTEQATD 575 ++K I +A L W GN EL +++E + ++ I+V DLP+ + + Sbjct: 462 DKKVKGISKEAEQYLKIYEWKGNVRELENILERAINIMENSEIIQVKDLPKEITGK---- 517 Query: 576 DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 VS AE EK AII A + G + + +L IGRT+L+ K++++ I Sbjct: 518 KVSMVPKKLQDILAESEKNAIILALRAADGNKSKAAKILDIGRTSLYEKIEKYKIQ 573 Score = 62.4 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 31/206 (15%), Positives = 71/206 (34%), Gaps = 46/206 (22%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 ++++L +L++M + +I D + FIN A+ + +D+ G+ I E++ P + Sbjct: 7 FKNYISKLEVILDNMFNAIIVVDSNDKILFINEAASILFDIDSKGGLGKNINEIMPDPDI 66 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT-SFILLLHPVEQMRQLMTS- 315 + +K ++ ++++ P E T +L+ V QL+ Sbjct: 67 EYFLSTKKEEIKRPIVV-----NELNLILSIIPFGENTNTQGSMLIFSNVTNYSQLIHKL 121 Query: 316 -------------------------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 + F + ++D R + Sbjct: 122 EEERDSKEILNTVIETAYDGMIIIDKQGIVTMISNAYTEFLGIKREDAIGRHVNEVIE-- 179 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHN 370 + P++L GK ++Q +H Sbjct: 180 -NTRMPIVLE----TGKEEVAQ-LHK 199 >UniRef50_C0GGJ4 Putative sigma54 specific transcriptional regulator n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGJ4_9FIRM Length = 581 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 123/506 (24%), Positives = 212/506 (41%), Gaps = 45/506 (8%) Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNA 207 +P+ ++ G L G I + L E + +L Sbjct: 87 SPIRNADGELVGAIGVFQDN------------------SELESMTHAFKEEKKVAEELQD 128 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 ++ES DG+ D QG +N+ R+ + G+ + EL+ Sbjct: 129 IIESSYDGMWITDGQGYTLHVNSAYERISGMKKEEVLGKHMQELVDKGYFSDSVTLHVLE 188 Query: 268 LKHVEATFES-QHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGKVSHT- 323 K + A+IT PI + G ++ + + ++ L K Sbjct: 189 KKERVTMMHEIRKTGKRALITGNPIFDENGEIVRVVTNVRDITELLNLKQDLEDKAKQAA 248 Query: 324 --------------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 + + + PQ R + + VL+ GE GVGK +++Q + Sbjct: 249 RYQNELAQLRSKSIYDDIVVESPQMRHIFDLATWVGQVDSTVLILGESGVGKEVVTQIVV 308 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 SER P+I VNC + L E G + T + G+ ELAH GT+ L+++ Sbjct: 309 RSSERRDEPFIKVNCGAIPENLLESELFGYEKGSFTGADKKGKPGMFELAHKGTILLDEV 368 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + LQ LL+ I++ I R+ + + +DV++IA T DL LV +F L+Y L Sbjct: 369 AEIPLNLQVKLLRAIQEQEIIRVGGTKPLKLDVRIIAATNRDLDELVRTGQFREDLFYRL 428 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYS 545 + IT+PPLR RR IPAL+ L +++ + + + RLVS WPGN EL + Sbjct: 429 NVIPITVPPLRERREDIPALIELFLCKYNEKYRLNKTLAPETVERLVSYDWPGNVRELQN 488 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDD----VSATRLSTSLSFAEVEKEAIINAAQ 601 ++E + + S + + LP L + TD + + + EVEK+ ++ A Q Sbjct: 489 IVERMVVLSRDDEVGPDALPLQLKSVGKTDADFHVDVSGVVPLKDALFEVEKKLVVKALQ 548 Query: 602 VTGGRIQEMSALLGIGRTTLWRKMKQ 627 G + + LG+ ++T+ RK ++ Sbjct: 549 KY-GTTRRAAEALGVDQSTVVRKYQR 573 Score = 76.6 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 9/131 (6%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L +L+S+ +G+++ D G + IN AARV G + ++ L + I+ Sbjct: 8 LQTVLDSVYNGIVACDTDGRIILINESAARVAGQPKDKLMGARVDQVFP-NTGLLEIIRT 66 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPII--ETQGTSFILLLHPVEQMRQLMT--SQLGKV 320 H F+ + + PI + + I + ++ + + KV Sbjct: 67 GENRPHQRLNFQGR----LLLSNRSPIRNADGELVGAIGVFQDNSELESMTHAFKEEKKV 122 Query: 321 SHTFAHMPQDD 331 + + + Sbjct: 123 AEELQDIIESS 133 >UniRef50_C4FI59 AAA family ATPase n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FI59_9AQUI Length = 531 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 122/506 (24%), Positives = 212/506 (41%), Gaps = 53/506 (10%) Query: 136 FKQVLWNWAFCAT-------PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNL 188 F+ + C+ P+F G G I E+ + Sbjct: 67 FEDFNITLSCCSKKVCYSFKPVF-ENGEFAGII---------------------EEIRDS 104 Query: 189 LLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI 248 + + + + +L+S+ D ++ D QG + N A +L +G + Sbjct: 105 TKVNQYIEIIKKEKEFSHLILDSVIDAIVVVDNQGKIINYNQNAKNLL-CREVDIKGMNL 163 Query: 249 TELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQ 308 + L+ +K+ + + I + +G+ F + P Sbjct: 164 SLLIKKD------LKELPSSREDIIIETPAYGKIKVSAVFTRLKSGEGSIFSFYVVPDCM 217 Query: 309 MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + Q S + + ++ + A ++ VLL GE G GK +L++ I Sbjct: 218 LSQEAASNKSR-------LITKSSLMVYVLDIAKTVADTTANVLLEGESGTGKNVLAKYI 270 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKI 425 HN+S R P++ +NC D L E G T + ++ELA GGTLFL++I Sbjct: 271 HNQSSRRDKPFVKINCAAIPDNLLESELFGYVKGAFTGAVKDKPGKVELADGGTLFLDEI 330 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L LQS LL +I++ RL + +DV++IA T DL+ LV++ +F LYY L Sbjct: 331 GELPTYLQSKLLHLIQEKEFERLGDTKTKKVDVRIIAATNKDLSQLVKEGKFREDLYYRL 390 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELY 544 I +P LR R+ IP L+N + K+++ +K I +A+ L++ +PGN EL Sbjct: 391 KVISIKVPALRERKEDIPFLINYFIDLYSKQYNKHIKGISPEAVRLLLNYDYPGNIRELE 450 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 ++IE + + I VSDLP+ + + EK+ I+ + Sbjct: 451 NIIERAVILAKGKFIEVSDLPDEIVYNTKILTQNDLDEEID------EKQKILRVLESVN 504 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 + + +L I R TLWRK+K++G+ Sbjct: 505 WNKSKAAKILNIDRVTLWRKLKKYGL 530 Score = 47.7 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 46/128 (35%), Gaps = 7/128 (5%) Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA-SQGRAITELL-TLPAVLQQAIKQ 264 LL ++ GVI D+ ++++N A +L + + + ++ P Sbjct: 4 DLLNNLSTGVIFVDKNKEIKYVNKTAKDILNIKEGQSCKNLKMFDICKKCPIDYYNKHST 63 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQLGKVSHT 323 + T + + + KP+ + I + ++ Q + ++ K Sbjct: 64 FPEFEDFNITLSCCSKKVCY--SFKPVFENGEFAGIIEEIRDSTKVNQYI--EIIKKEKE 119 Query: 324 FAHMPQDD 331 F+H+ D Sbjct: 120 FSHLILDS 127 >UniRef50_Q0AVM6 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=4 Tax=Bacteria RepID=Q0AVM6_SYNWW Length = 935 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 148/628 (23%), Positives = 247/628 (39%), Gaps = 75/628 (11%) Query: 39 QGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLS 98 + RR K + L L+ + +FI D A L N + + ++ Sbjct: 345 DITELNELERRLKH-IGLRDRELDTI---LDSSFDGIFITDGEANTLRLNQAFERITGVT 400 Query: 99 ALGFNDGTYCAE-------GIIGT---------CALSLAAISGQAVKTMADQHFKQVLWN 142 A G E GT ++L +G+ V Sbjct: 401 AQE-CVGRNMKELVDEGYFSGSGTLLVLEKRERATITLVTRTGKEVLV------------ 447 Query: 143 WAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETN-RH 201 +TP+FD +G + L + R++ L + + Sbjct: 448 ---TSTPIFDDQGNIM------------------LVVTNVRDITELNELEREFKKMVGLR 486 Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 +L+A+ ES DG+ D + N +N R+L + A GR + EL+ + Sbjct: 487 ERELDAVFESSYDGLYITDGEANTLRLNEAFERILGVKAEECIGRNMRELVAEGVYSRSG 546 Query: 262 IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGK 319 A + A++T PI + G +++ + + ++ +L Sbjct: 547 TLLALEKQDQVTITLQAKTGKTALVTSTPIRDEHGNIILVVTNVRDISELNELQEKLGHA 606 Query: 320 VSHT------FAHM------PQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + M + R LI + A VL+ GE GVGK L++ Sbjct: 607 EELSRFFQSELQEMKLRTQCVIHSSKMRELISMVVRIAAVDSTVLIQGESGVGKELVANT 666 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLE 423 IH+ S R P I +NC + L E G + T + G++ E+A G LFL+ Sbjct: 667 IHSNSNRREQPMIKINCGAIPENLLESELFGYEPGAFTGASKQGKVGMFEVADQGILFLD 726 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I L + LQ LL+V++ I R+ + I +DV++IA T +L +VE+ F + L+Y Sbjct: 727 EIGDLPLSLQVKLLRVLQDKEILRVGGTKPIKVDVRIIAGTNYNLKEMVEKKLFRKDLFY 786 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L+ IT+PPLR RR IP L N+ L + ++ K+ LA + WPGN EL Sbjct: 787 RLNVIPITVPPLRERREDIPILANHFLDNFNQKHGMNKKLSGSILAYFMEYDWPGNVREL 846 Query: 544 YSVIENLALSSDNGRIRVSDLPE-HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 +++E L ++S N I DL + D + + E+ + NA V Sbjct: 847 ENLVERLVVTSLNQTITAHDLSAWSELKPENKSDNEHGIVRLQDALENTERRILENAFSV 906 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E++ LGI + T+ RK ++GI Sbjct: 907 CK-STYEVARALGISQPTVVRKAAKYGI 933 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 90/308 (29%), Gaps = 71/308 (23%) Query: 40 GVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSA 99 A + + + +++ + + + D L N + Sbjct: 230 AEELARTRELNRQLDAIFESSFDGLY-----------LTDGEGNTLRLN-QGFVRITGIS 277 Query: 100 LGFNDGTYCAE-------GIIGT---------CALSLAAISGQAVKTMADQHFKQVLWNW 143 + G+ E GT ++L A +G+ V Sbjct: 278 MEECVGSNMRELVDTGVFSDSGTLLALEKQERTTITLVARTGKEVLV------------- 324 Query: 144 AFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLN 203 +TP+FD +G + + R++ L + L Sbjct: 325 --TSTPIFDEQGNI------------------AFIITNVRDITELNELERRLKHIGLRDR 364 Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 +L+ +L+S DG+ D + N +N R+ + A GR + EL+ Sbjct: 365 ELDTILDSSFDGIFITDGEANTLRLNQAFERITGVTAQECVGRNMKELVDEGYFSGSGTL 424 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGKVS 321 + + ++T PI + QG +++ + + ++ +L Sbjct: 425 LVLEKRERATITLVTRTGKEVLVTSTPIFDDQGNIMLVVTNVRDITELNELERE------ 478 Query: 322 HTFAHMPQ 329 F M Sbjct: 479 --FKKMVG 484 Score = 96.3 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 4/175 (2%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 I L + +A+ +++ L LA T QL+A+ ES DG+ D Sbjct: 199 ILLTNRTPLYKNGRIAGAVAVLQDISELEHIAEELARTRELNRQLDAIFESSFDGLYLTD 258 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 +GN +N R+ + G + EL+ A + Sbjct: 259 GEGNTLRLNQGFVRITGISMEECVGSNMRELVDTGVFSDSGTLLALEKQERTTITLVART 318 Query: 281 FIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMT--SQLGKVSHTFAHMPQDD 331 + ++T PI + QG ++ + + ++ +L +G + Sbjct: 319 GKEVLVTSTPIFDEQGNIAFIITNVRDITELNELERRLKHIGLRDRELDTILDSS 373 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 58/145 (40%), Gaps = 8/145 (5%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 L L +++ ++ A S+ + VIS D +G + +N + + A+ ++G+ +T Sbjct: 111 LIWQLCRIWHKNASEWEACFNSIYNPVISIDGEGRINLLNRALEKSTGISASEARGKKVT 170 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQ 308 ++ T + L + + + ++ + + P+ + + +L + + Sbjct: 171 DIFT-NSKLNEVLTTGQTQATRKIQYQDK----ILLTNRTPLYKNGRIAGAVAVLQDISE 225 Query: 309 MRQLMTS--QLGKVSHTFAHMPQDD 331 + + + +++ + + Sbjct: 226 LEHIAEELARTRELNRQLDAIFESS 250 >UniRef50_Q3ACE2 Sigma-54 dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACE2_CARHZ Length = 573 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 110/491 (22%), Positives = 200/491 (40%), Gaps = 24/491 (4%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + + + + +A+E+ L L L +LE+ +G + D Sbjct: 84 LYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENVLALKQTLETILEAGQEGYMVLD 143 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 + N A + L + + I L P + + ++ E + Q Sbjct: 144 LDKTVTHANKAIADLFGLKLSDIVNKPINSLTANPFFCE--LPESADDIKTEVVEINGRQ 201 Query: 281 FIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHTF 324 + + + G ++ V + L + T Sbjct: 202 VVAFKYPIVKDYKLYGGVIKVIFQEVSDLLALAEKVNQLNSELSYYKNELTKYTSKQFTE 261 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + + P RL ++ A + VL+ GE G GK L++ A+H ES R G +I VNC Sbjct: 262 NKIIGNHPSIVRLKEIIKKIAPYNTTVLIRGESGTGKELVAHALHVESGRP-GSFIKVNC 320 Query: 385 ELYGDAALAEEFIGG---DRTDNENG-RLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 + E G T + G ++ + ELA+ GT+FL++I + + +Q+ LL+V+ Sbjct: 321 AAIPENLFEAELFGYVEGAFTGAKKGGQIGKFELANNGTIFLDEIGDMPLTMQAKLLRVL 380 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ + RL R+ I+V+VIA T +L L+++ +F LYY L+ + +P LR R Sbjct: 381 QEKEVERLGDRKTRKINVRVIAATNQNLEELIKKKKFREDLYYRLNVISLYVPALRERIE 440 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 +P L+ + K + T + I + + ++ +WPGN EL +V+E + I Sbjct: 441 DLPLLIKYFIEKFNKEYGTNVTGISPEVMDIFMNYSWPGNIRELENVLERCFNLVEGKVI 500 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 LP ++ E+ + S + EKE I A G + + LLGI R Sbjct: 501 EKKYLPPYILGEELKNKEFPLGQSLTNLLEAYEKELIKAALLKAKGNKSKAANLLGISRQ 560 Query: 620 TLWRKMKQHGI 630 L +++K + Sbjct: 561 WLHKRLKYFNL 571 Score = 70.1 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 53/131 (40%), Gaps = 9/131 (6%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 HL+ LN +L+S+ + +++ DE+G + N + RV A + G+ I E+L + L + Sbjct: 8 HLSLLN-ILDSIHNAIVAIDEEGKVIIFNKASERVFNYPAKKALGKNINEVLPF-SGLNK 65 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQLG- 318 +K + V+ P+ + + I + + +++ + Sbjct: 66 VLKTGESHIGRKFKIGDN----LYVVNRTPLYYKGKIIGAIGVAQEINELKNIADELENV 121 Query: 319 -KVSHTFAHMP 328 + T + Sbjct: 122 LALKQTLETIL 132 >UniRef50_A1HPH1 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HPH1_9FIRM Length = 478 Score = 553 bits (1427), Expect = e-156, Method: Composition-based stats. Identities = 119/464 (25%), Positives = 200/464 (43%), Gaps = 27/464 (5%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 ++L A N + +L A+++S DG+ D + N+ +NA R+ + A GR + Sbjct: 12 RDENLYANFNELITELEAIIDSSYDGIFITDGKANVLRLNAAYERITGIKAAEVVGRNMV 71 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFE-SQHQFIDAVITLKPIIETQGTSFILL--LHPV 306 +L+ Q + + + ++T P+ + +G F ++ + V Sbjct: 72 DLVREGLYDQSVTLLVLEQRARVTIDQIVKRNNKHILVTGNPVFDKRGGIFRVVTNVRDV 131 Query: 307 EQMRQLMTSQLGKVSHTFA----------------HMPQDDPQTRRLIHFGRQAARSSFP 350 + +L T + ++ + A Sbjct: 132 TDLNRLQNQLTKTQEETLKYQTELNHLRALHIKDPDIIFRSRAIAAVVELATKVADVDST 191 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-N 406 VL+ GE G GK L ++ IH P+I +NC + L E G T + Sbjct: 192 VLITGESGTGKELFAKLIHRHGRGDNRPFIKINCGAIPETLLESELFGYDGGAFTGAKRE 251 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ ELA GGTLFL++I + LQ LL+VI++ + R+ + ++V++IA T Sbjct: 252 GKPGLFELADGGTLFLDEIGEMPPVLQVKLLRVIQEKAVIRVGGVKQKSVNVRIIAATNR 311 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDD 526 DLA +V+Q F LYY L + IPPLR R+ IP LV + L K+F I D Sbjct: 312 DLAHMVQQGTFREDLYYRLMVVPLHIPPLRERKEDIPLLVKHFLDKFNKKFGFNKVILPD 371 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSL 586 + RL +WPGN +L ++IE L +++ I LP+ + A + T Sbjct: 372 VIDRLTEYSWPGNVRQLENIIERLVVTTPGNEITADMLPQQV---NARIPLPKTGTKLKE 428 Query: 587 SFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + A EK + + G +++ +LGI RTT RK ++G+ Sbjct: 429 AVAATEKYLLTETFRQY-GNWNKVADVLGIDRTTACRKAVKYGL 471 >UniRef50_Q5WF71 Sigma-L-dependent transcriptional regulator n=2 Tax=Bacteria RepID=Q5WF71_BACSK Length = 657 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 131/542 (24%), Positives = 241/542 (44%), Gaps = 22/542 (4%) Query: 107 YCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRL-TGTIALAC 165 + E + LA G+ ++T+ L P ++ GT+ + Sbjct: 119 FMNEAAAHMAGVELAKAIGKPIQTLLP---SSGLPRVIETQQPEYNQLHEFDNGTVIVTT 175 Query: 166 PVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNL 225 V +A+ ++V + + L A++ S +D + DE G Sbjct: 176 RVPLIFGGACSGAIAVFKDVTEATQLAEQVTDLRSIQTMLEAIINSSNDAISVVDENGTG 235 Query: 226 QFINAQAARVLRLDATASQGRAIT-ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDA 284 +N ++ LD+ G+ T ++ ++ Q ++ P++ + + Sbjct: 236 LMVNPAYTKLTGLDSDQIIGQPATADISEGESIHMQVLRTKKPVRGARLKLGPHKKDVIV 295 Query: 285 VITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG--------KVSHTFAHMPQDDPQTRR 336 + +++ + I ++H V ++ +L + + +++F+ + + Sbjct: 296 NVAPV-VVDGELKGSIGVIHDVSELNRLSSQLQHAQKRLATLEATYSFSEIVGTSKEMAF 354 Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 I ++ A++SFP+LL GE G GK L + AIHNESER P++ VNC + L E Sbjct: 355 AIEQAKRGAKTSFPILLLGETGTGKELFAHAIHNESERKGQPFVRVNCAALTETLLESEL 414 Query: 397 IGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G + + ++G+ E A G++FL++I ++ Q+ LL+V+++ I R+ + Sbjct: 415 FGYEQGAFSGALKSGKKGLFEEAEHGSIFLDEIGEMSPNTQAKLLRVLQEQEIVRVGGTK 474 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 IPI V+VIA T DL + + RF LYY L+ I IPPLR R +PAL+++ LR Sbjct: 475 PIPIHVRVIAATNVDLEGAIRERRFREDLYYRLNKLPIRIPPLRERLSDLPALIDHLLRK 534 Query: 513 LEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD--LPEHLF 569 L + ++ I L+R WPGN EL +V+ + D G ++D LP+ Sbjct: 535 LNLDYGHNIQSISKLVLSRFEGYYWPGNVRELENVLARSMIYMDLGATELTDVSLPQEFG 594 Query: 570 TEQATDDVSATRLSTSLS-FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 ++ AT + AE EKE + G E + LLGI +L+ K++++ Sbjct: 595 QSGKREESDATAPKQLQAFLAEKEKEHLRRTLAEVDGVKTEAAKLLGISIRSLYYKLEKY 654 Query: 629 GI 630 + Sbjct: 655 NL 656 Score = 63.9 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 58/173 (33%), Gaps = 21/173 (12%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 + + E + + + ++ DG+I + +QF+N AA + ++ + G+ I Sbjct: 82 MAWEKVLEAIKDDLLMKKAIHAIQDGMIVVNRFAQVQFMNEAAAHMAGVELAKAIGKPIQ 141 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQM 309 LL + L + I+ P + F++ + + L I + I + V + Sbjct: 142 TLLP-SSGLPRVIETQQPEYNQLHEFDNGTVIVTTRVPL--IFGGACSGAIAVFKDVTEA 198 Query: 310 RQLMTSQ--LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 QL L + + ++ E G G Sbjct: 199 TQLAEQVTDLRSIQTMLEAIINSSNDAISVVD----------------ENGTG 235 >UniRef50_A4J593 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J593_DESRM Length = 582 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 112/474 (23%), Positives = 213/474 (44%), Gaps = 28/474 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + L + + + A + +L+ +++ + D+ + N +A + + A Sbjct: 112 LLEPLSVANEIYAGFVKLRCFFETVLDQVNESICGIDKLHRVMIWNPKAEELYNVKAEKI 171 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE-TQGTSFILL 302 I + + + + ++ + + + +I P+ + + + + Sbjct: 172 LSGRIEDFF-SNLRISNCMHEKKEVRGL---YHQPCEGAHVLINSAPVFDSGKVIGGLAV 227 Query: 303 LHPVEQMRQLMTSQLGKVSH----------------TFAHMPQDDPQTRRLIHFGRQAAR 346 + ++ QL + F + ++LI FG++ + Sbjct: 228 EKDITEIVQLNQELNKASTQVKLLEQEIRKISGQDCAFNKLIGRSEAIQKLIVFGKKISV 287 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD 403 + VLL GE G GK LL++AIH S R P+I VNC + E G + T Sbjct: 288 TEATVLLRGESGTGKELLARAIHQNSPRHMNPFIVVNCGAIPNNLFESELFGYEGGAFTG 347 Query: 404 N-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 G+ ELA+GGTLFL+++ + +E+Q+ LL+V+++G R+ + + ++V+V+A Sbjct: 348 ADRKGKPGMFELANGGTLFLDEVGEMPIEMQAKLLRVLQEGTFYRVGGSQSVHVNVRVLA 407 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL- 521 T +L ++ + +F LYY L+ + IPPLR RR IP LV+ ++ +++ + Sbjct: 408 ATHRNLEDMINRRQFREDLYYRLNVVALEIPPLRDRREDIPELVHLFMQEFCQKYDKNIK 467 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ--ATDDVSA 579 KI+ + + WPGN EL + +E L + +D I + LPE+L + Sbjct: 468 KIEPAVMTAFLDYTWPGNVRELKNAVERLVVLTDGDIIDEAALPENLRRNTYISLVTSPV 527 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 ++ E EK+ I+ Q G E + +LGI R+TL+ K++Q GI A Sbjct: 528 SQGKLMNVAVEAEKQLILKTLQQVRGNRSEAARVLGIPRSTLYYKLRQLGIPAK 581 >UniRef50_A6CKR1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKR1_9BACI Length = 685 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 128/606 (21%), Positives = 237/606 (39%), Gaps = 69/606 (11%) Query: 53 MLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGI 112 +L + + + + DE ++ N + + E Sbjct: 122 LLKSASTLKDQLETILTHSNIGVLMTDEHLRVIYANASFSKIT-GHPINSIYSKDLNETF 180 Query: 113 IGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATP-LFDSKGRLTGTIALACPVEQTT 171 ++T H ++ A + +G++ Sbjct: 181 -----------PSLPMETHGPYHSEEYKSILHMSAYETVTHKQGKII------------- 216 Query: 172 AADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 + +++ + L + + L+ DG++ DE ++ ++ Sbjct: 217 ---------LFQDISEIEKMAEELQTIKKLKLTIETALDHAYDGILMTDEHNVIKMVSPP 267 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 + LD + + +++ L Q K + E + + I ++ PI Sbjct: 268 LLELFNLDKKDVLHKKV-DIVMPQLKLDQVFKT----EAAEVSDLHERNGIKYIVHRIPI 322 Query: 292 IETQ---GTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDP 332 + G ++ + ++ L + T+ H+ P Sbjct: 323 KKEGKVIGAIGKVMFRQLNEVSALFKRLQKAESKASFYHQQLQKSETARFTWDHILSKHP 382 Query: 333 QTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL 392 +L +AA+ VL+ GE G GK L + AIHN S R+ G ++ VNC + L Sbjct: 383 YMDKLKKSAAKAAKGRSTVLIRGESGTGKELFAHAIHNSSARSDGKFVIVNCAAIPEDLL 442 Query: 393 AEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRL 448 EF G T + G++ + +LA+GGTLFL++I ++V LQ+ LL+V+++ R+ Sbjct: 443 ESEFFGYDEGAFTGAKQRGKVGKFDLANGGTLFLDEIGDMSVALQAKLLRVLQEREFYRV 502 Query: 449 DARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN 508 I +DV++IA T DL +V++ F LYY L+ + IPPLR R + L + Sbjct: 503 GGNSRIKVDVRIIAATNRDLEKMVKEGEFREDLYYRLNVISLKIPPLRERIHDVEYLTSQ 562 Query: 509 KLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEH 567 + L T + I A L+ WPGN EL +++E +++G I+V DLP++ Sbjct: 563 LMIELNSMLGTSITGISPKAKESLLQYNWPGNVRELKNILERAMTFAEHGNIQVEDLPDY 622 Query: 568 LFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 L + L+ + E EAI A G + + LLGI R+ L+ K+K+ Sbjct: 623 LIDQLTIPKKEKNGLA-----EDAELEAIRKALTQANGNKAQAARLLGISRSGLYEKLKK 677 Query: 628 HGIDAG 633 + + A Sbjct: 678 YELSAK 683 Score = 49.3 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 24/205 (11%), Positives = 61/205 (29%), Gaps = 40/205 (19%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALL 209 + D G++ G + + +LL + +QL +L Sbjct: 102 VLDEHGKVIGLLTKT------------------------EMVMTLLKSASTLKDQLETIL 137 Query: 210 ESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLK 269 + GV+ DE + + NA +++ + + + E ++ P Sbjct: 138 THSNIGVLMTDEHLRVIYANASFSKITGHPINSIYSKDLNETFPSLP-----METHGPYH 192 Query: 270 HVEATFESQHQFIDAVIT--LKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHM 327 E + V K I+ + + ++ +++L + + H + + Sbjct: 193 SEEYKSILHMSAYETVTHKQGKIILFQDISEIEKMAEELQTIKKLKLTIETALDHAYDGI 252 Query: 328 PQD---------DPQTRRLIHFGRQ 343 P L + ++ Sbjct: 253 LMTDEHNVIKMVSPPLLELFNLDKK 277 >UniRef50_B2A2S4 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Clostridia RepID=B2A2S4_NATTJ Length = 471 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 121/471 (25%), Positives = 224/471 (47%), Gaps = 29/471 (6%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 ++L ++ ++ + + + VI DE+G ++ IN A +L++ + GR E Sbjct: 1 MSTILKNFENVVDVVDRIFDVIPVPVILVDEKGIIRMINRAFADLLKVSKQQAIGRPAVE 60 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI-----LLLHP 305 + + +K + F + DAV+ PI + + +L Sbjct: 61 V-DHNSKWPVVLKSGEFDIAKKHKFARTGE--DAVVHRIPIYDYDSGEIVGGFGMVLFQN 117 Query: 306 VEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 ++++R L Q+ +++ ++ + ++AAR+ Sbjct: 118 LKELRDLADKNKLLEKKLDHYKQRVRQIYSTKYSWDNIKTCSSKMEACKQNAKKAARTDL 177 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-E 405 VL+ GE GVGK + +QAIHNES R+ P+I VNC + L E G T + Sbjct: 178 NVLITGESGVGKEIFAQAIHNESHRSDHPFIKVNCAAIPENLLESELFGYQGGAFTGASK 237 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G+ + ELA GTLF ++I + ++Q+ LL+VI++G + RL ++ +DV++IA T Sbjct: 238 EGKPGKFELADKGTLFFDEIGDMPKKMQAKLLRVIQEGEVERLGGQKEQEVDVRIIAATN 297 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 +L LV + F L+Y ++ + IPPL+ R+ I L + L ++ +I Sbjct: 298 KNLEELVATDDFREDLFYRINVLTLNIPPLKDRKEDIALLAEDFLYETKQEMGENKQISQ 357 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLST 584 +A+ L WPGN +L ++I+ LA++++ I SD+P L + Q ++ S Sbjct: 358 EAVEVLQKYDWPGNIRQLKNIIQRLAVNAETTVIEKSDIPIKLLKQLQISESPSYPEEGL 417 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 + +VEK+ I ++ +++L I R+TL+RKMK++G+ G + Sbjct: 418 NEIVEQVEKKVIRETLELYDFNKSMAASILNIPRSTLYRKMKKYGLKEGIY 468 >UniRef50_Q0SQI9 Phosphocarrier HPr/sensory box protein/sigma-54 dependent transcriptional regulator n=21 Tax=Clostridium RepID=Q0SQI9_CLOPS Length = 668 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 115/495 (23%), Positives = 216/495 (43%), Gaps = 34/495 (6%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 + L + +++ ++V +++ + +LE+ D + D Sbjct: 187 VGLVNSSPLFINDKIIGAISVIQDVSDIIGM-------KEINEKFTKILENSQDMICFVD 239 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 E G + ++N + ++ G++I ++ + K+ LK V + Sbjct: 240 ENGIINYLNPAYIKNFSKVSSDVIGKSIFDIAPNGLR-AKVFKEKTLLKDVI----HKKN 294 Query: 281 FIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHT 323 I+ + T+ P+ + Q I PV +++LM+ + + + Sbjct: 295 GINVISTIDPLFIDGQFKGVISTSRPVSLIKELMSKLNKSEQELDYYKNEFLRQLSKNSS 354 Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F ++ + +++ ++A+ ++ VL+ GE G GK L+++AIHN S R P++ VN Sbjct: 355 FNNIIGSTRTLKDIMYMCQKASETTSTVLIRGESGTGKELIAKAIHNNSNRKNKPFVRVN 414 Query: 384 CELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 C + L E G + T + + +A GT+FL++I + + +Q LL+V+ Sbjct: 415 CASIPENLLESELFGYEKGAFTGAVQSKPGKFAIADTGTIFLDEIGDMPLSMQVKLLRVL 474 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ I + IDV+VIA T +L ++E F LYY L+ I +PPLR R+ Sbjct: 475 QEREIESVGGITPKNIDVRVIAATNRNLEEMIEDGSFREDLYYRLNVLGINLPPLRERKE 534 Query: 501 SIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 IP L + + L K+ + I DAL L+ +WPGN EL +++E D I Sbjct: 535 DIPELAEHFITKLNKKLHKTILGIKQDALNLLIEYSWPGNIRELENIMERAINLCDGDYI 594 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 S LP +L ++ + L F E EK+ I A + + LG+ Sbjct: 595 DSSYLPSYLKPVESKSFNLNIDIDHILPFEEYEKQIIEAAMKKYK-SFNKAGKALGLTHR 653 Query: 620 TLWRKMKQHGIDAGQ 634 T+ K K++ I+ + Sbjct: 654 TVSLKCKKYNIEVKK 668 Score = 64.7 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 44/130 (33%), Gaps = 11/130 (8%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +LES+ G++ D N+ IN A R + + +G+ I E++ + + Sbjct: 115 EQVLESLPIGIVVIDIDQNIITINQYALRFIGCNKKDVKGKKINEVIPSSQLPHVMLSNL 174 Query: 266 HPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQLGKVSHTF 324 ++ P+ + I ++ V + + +++ F Sbjct: 175 KKYGSTLHINNRVG-----LVNSSPLFINDKIIGAISVIQDVSDIIGM-----KEINEKF 224 Query: 325 AHMPQDDPQT 334 + ++ Sbjct: 225 TKILENSQDM 234 >UniRef50_Q0AWW3 Sigma-L-dependent transcriptional regulator n=4 Tax=Clostridiales RepID=Q0AWW3_SYNWW Length = 696 Score = 551 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 116/517 (22%), Positives = 218/517 (42%), Gaps = 43/517 (8%) Query: 139 VLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAET 198 + +P+ G + G + + +++ L L Sbjct: 197 NNHYFISNRSPIIK-DGEIIGAVGVL------------------QDISELEELSRELKYV 237 Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 +L+A++ES DG+ D G +N + ++ GR + ++ V Sbjct: 238 KELNEELDAIIESSYDGLYITDGNGMTLRLNKAFEMITGINGREFLGRHVDDIAREGIVS 297 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTS- 315 + A K + + T P+ + G F ++ + + ++ L Sbjct: 298 ESVSSLALARKETVTIIQETRSGKTTLATGSPVFDKIGNIFRVVCNVRDITELNMLKQKL 357 Query: 316 --------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + ++ + + R+L+ + A +L+ GE G GK Sbjct: 358 EQVQGLSQHYESQLKTLRIYSGTDKIISKSTEMRKLLETVVRLAEVDSTILINGESGTGK 417 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHG 417 L+++ IHN S RA P+I VNC + + E G + T + G+ ELAH Sbjct: 418 ELIAETIHNHSARAKKPFIKVNCGAIPENLMESELFGYEYGAFTGAKKEGKAGYFELAHE 477 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L LQ LL+V++ I R+ R+ + +D +++A T +L +V++ +F Sbjct: 478 GTLFLDEIGDLPFNLQVKLLRVLQSKEINRVGGRQALKVDTRILAATNRNLLEMVQKKQF 537 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LYY LH + IPPLR R+ IP+L+ + + +++ +I D + L++ WP Sbjct: 538 REDLYYRLHVIPVIIPPLRDRKEDIPSLIVHFIALFNRKYKLNKRISPDVVDILMAYDWP 597 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR--LSTSLSFAEVEKEA 595 GN EL ++IE L + S + I +LP HL + + + + + VE++ Sbjct: 598 GNVRELENLIERLVVISSSDIISRDELPVHLSSAAVDNPQVSVSAIIPLKEAVESVERQL 657 Query: 596 IINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + A ++M+ L + +T+ RK ++GI Sbjct: 658 LERAFAQYR-TTRQMAQKLEVNASTVVRKAAKYGISP 693 Score = 79.3 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 60/151 (39%), Gaps = 8/151 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + L L ++L+A++ S + ++S D+Q ++ N A ++L+ A Sbjct: 106 MITRTDLARVFLESYRNISSELDAIINSTHNMIVSVDKQSRIRVFNRAAEKLLKQKAENV 165 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILL 302 +G+ I ++ + L IK + + + + PII + + + + Sbjct: 166 KGKLIDDVYP-TSRLTNIIKSGQVETLQKIMLNNHY----FISNRSPIIKDGEIIGAVGV 220 Query: 303 LHPVEQMRQLMT--SQLGKVSHTFAHMPQDD 331 L + ++ +L + +++ + + Sbjct: 221 LQDISELEELSRELKYVKELNEELDAIIESS 251 >UniRef50_D0LRM2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRM2_HALO1 Length = 650 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 149/634 (23%), Positives = 245/634 (38%), Gaps = 30/634 (4%) Query: 16 IATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECA 74 + W+R +L P + R + +L G+ +E A + Sbjct: 31 VLEHWQRARELGALHDGPRPEDALDRGGLSERIERVEPVLIGGRGIIERVSAVAAGHDYT 90 Query: 75 LFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQ 134 L + DE+ ++ G +Q G +E GT A+ + V Sbjct: 91 LLVADESGVVVRSGG--GFREQAQRAQLLAGADWSERQRGTNAIGTVLAEERPVFVHGGA 148 Query: 135 HFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSL 194 H+ + P+ D+ G L I VE+ A +A A+ + +L + Sbjct: 149 HYARNYHGLVCYGAPVRDADGTLVAVIDATSSVERANPAVGFGVIAAAQALEEVLRVRAY 208 Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR-----LDATASQGRAIT 249 L LE M V + + +NA A ++ LD G Sbjct: 209 SLAGATVTRALARSLERMSCPVALVEPPDRISRVNAAARQLFGGGGAQLDLATLLGVDFD 268 Query: 250 EL--LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVE 307 L V +A + L+ ES + I + +P+ + Sbjct: 269 TLAEFDGDPVELRAGDRRQTLRVRVEPIESGGRAIALLCFFEPVQGQAQPAPAR------ 322 Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + F+ + +D TR+ + + + A S PV+L E G GK L++ Sbjct: 323 ----PRAPRPAPAETPFSALFAEDAATRQALAWAERIAPSDLPVMLLAETGAGKELVANG 378 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLE 423 IH S RA+GP++AVNC D+ L E G T GR E A GGTLFL+ Sbjct: 379 IHRASARASGPFLAVNCGSIADSLLESELFGYAPHAFTGAERGGRSGYFEAASGGTLFLD 438 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 ++ + + +Q+ALL+V++ G R+ + DV+V+ T DL LVE +F LY+ Sbjct: 439 EVAEMPLAMQAALLRVLETGSYRRVGEVQQRHADVRVLCATCRDLPSLVEHGQFRSDLYF 498 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVSCAWPGNDF 541 L +T+PPLR R + +L ++ L R ++ A L WPGN Sbjct: 499 RLKGVTVTLPPLRAR-SDLLSLAHHLLAQAAMRSGQAPAPRLSPAAQELLRGHTWPGNVR 557 Query: 542 ELYSVIENLALSSDNGR-IRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 EL S +E + + + I LP L + + S A+V+ + Sbjct: 558 ELKSALEVALVLAGDAIEIAPEHLPPELRS--LDAAPAPADDPGEESLADVQGRLVRRVL 615 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 G + + LG+ R+TL+R M++HG+DA Sbjct: 616 GEVAGNVSLAAKRLGVARSTLYRMMRRHGVDADD 649 >UniRef50_A1K9F7 Sigma-54-dependent transcriptional regulator n=1 Tax=Azoarcus sp. BH72 RepID=A1K9F7_AZOSB Length = 629 Score = 550 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 130/615 (21%), Positives = 231/615 (37%), Gaps = 41/615 (6%) Query: 25 KLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETAC 83 + E+ V + +A+L + + + + + L+ Sbjct: 43 EYGVSESARVVFDPLGRSALRRLADEHRALLAHAEPEMLSLFGTLDASSWVVACLEAGGA 102 Query: 84 ILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNW 143 +L G A G +E + GT + +HF + + + Sbjct: 103 VLKSCGGNTAELGDIATALRPGVNLSEQVAGTNGPGCVLAEQRPAIIHGGEHFLEEIRGF 162 Query: 144 AFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLN 203 A P+F GRL G + + + A L AR + N L L A ++ Sbjct: 163 TCVAVPIFHPSGRLIGALNASRRHDGRRAGILEPLALAARAIENRL-LSELAAPIRMRVH 221 Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 L++S+ G ++ G + ++ A ++L L+ Sbjct: 222 STPELVDSVMAGRLACSADGLILGASSCARQLLGLEQD---------------------- 259 Query: 264 QAHPLKHVEATFESQHQFIDAVITLK--PIIETQGTSFILLLHPVEQMRQLMTSQLGKVS 321 + S + + + P+ + L + R ++G + Sbjct: 260 -GGEIPAAAVFSTSFGELVGLLRRGADGPVTVRCNNGVQVHLRLDAEARPRPARRIGTEA 318 Query: 322 HTFAHMPQD---DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 D + ++ + +A PVL+ GE G GK +L++ +H R G Sbjct: 319 TRGDQDAARMRLDSRLQKDVRQAERAFAHDLPVLINGETGTGKEVLARHLHASGPRRDGA 378 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++AVNC + E G + T G +LE A GGTLFL++I + +ELQ+ Sbjct: 379 FVAVNCSAIPVGLIESELFGYEDGAFTGARRGGMAGKLEQADGGTLFLDEIGDMPLELQA 438 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ +TRL + R D +I T DL+ F LYY + + +PP Sbjct: 439 RLLRVLQERTVTRLGSTRARAFDCSLICATHRDLSAHCASGGFREDLYYRIAGLRVDLPP 498 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSS 554 LR R LV++ L + + ++ + A L WPGN EL V+ + Sbjct: 499 LRER-EDFDELVDHLLATHAR--GAPPRLAERAREALRRHRWPGNIRELQQVLRLGIALA 555 Query: 555 DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALL 614 ++GRI + LP L T+ T + E +A+ A G + + L Sbjct: 556 EHGRIDLDQLPASLATQAPPKRTPGTAT----TLQSAECDAVQAAYARNRGNVSATAREL 611 Query: 615 GIGRTTLWRKMKQHG 629 GI R TL+RK++++G Sbjct: 612 GIARATLYRKLRRYG 626 >UniRef50_C0GRG2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GRG2_9DELT Length = 464 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 116/460 (25%), Positives = 209/460 (45%), Gaps = 20/460 (4%) Query: 195 LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTL 254 + + R ++E M +G++ E G +Q +N + G+ + Sbjct: 1 MLKNQRVNIYCKDIVEIMQEGLLVVAEDGTIQMVNHALENITGYSKEELLGQPCSIFKCD 60 Query: 255 PAVLQQ---------AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLL 303 L + ++ +K +I + T + + QG + ++ Sbjct: 61 ACKLLRQASSGAWCRLFERKEQVKRKCHLMRKDGSYITVLKTAAVLSDDQGQTMGAVEIV 120 Query: 304 HPVEQMRQLMTS-----QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + +M +L + +F + Q + L +AA+S FPV +CGE G Sbjct: 121 TDISEMDRLDRQLRQLTRTLDEESSFQGIVGHSRQMKNLFELVEKAAQSDFPVFICGESG 180 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELA 415 GK L++QAIHN S RA PYI VNC ++ L E G T R R E A Sbjct: 181 TGKELVAQAIHNLSPRAEQPYIQVNCAALNESLLESELFGHVKGAFTGALQHRKGRFEAA 240 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 H G +FL++I L + +Q LL+V++ R+ R I +D++ I T +L L+ + Sbjct: 241 HKGDIFLDEIGDLPMAMQVKLLRVLETKTFERVGDNRTISVDLRFITATNKNLPDLIARG 300 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSC 534 F L+Y ++ I +PPLR R+ +P LV+ ++ L ++ ++ + +A+ + Sbjct: 301 GFREDLFYRINVIPIHLPPLRERKEDVPHLVDFFIKRLSRKNKKNIQGLSPEAMRIFMQY 360 Query: 535 AWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKE 594 +WPGN EL S +E + ++ RIR +LPE+L + + + + +K+ Sbjct: 361 SWPGNVRELKSALEYSYVLAEGDRIRSENLPEYLKDGGNDFQAVDLPPAPAENLQQRQKQ 420 Query: 595 AIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 +I A + + G + + LLGI R T+ +M+++GID + Sbjct: 421 ELIEALKQSSGNKSQAARLLGINRVTVLNRMRKYGIDLQR 460 >UniRef50_P54529 Putative sigma L-dependent transcriptional regulator yqiR n=39 Tax=Bacteria RepID=YQIR_BACSU Length = 692 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 111/507 (21%), Positives = 216/507 (42%), Gaps = 45/507 (8%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D GRL G + + +++ + + + + L A+ Sbjct: 200 PIIDEGGRLLGALCV------------------FKDITDAVELAEEVTNLKQVRTMLEAI 241 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAI-TELLTLPAVLQQAIKQAHP 267 ++S D+ + DE G IN ++ L G+ T++ ++ + ++ P Sbjct: 242 IQSSDEAISVVDENGIGLLINKAYTKMTGLSEKEVIGKPANTDISEGESMHLKVLETRRP 301 Query: 268 LKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLMTS--------QLG 318 ++ V + + ++ + P I++ + ++H V +++ L + Sbjct: 302 VRGVRMKVGPNEK--EVIVNVAPVIVDGILKGSVGVIHDVSEIKMLTAELNRARQIIRTL 359 Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 + +TF + Q + + A++ +LL GE G GK L + AIHNES+R Sbjct: 360 EAKYTFDDIIGKSEQMLVALEQAKLGAKTPATILLRGESGTGKELFAHAIHNESDRKYNK 419 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 +I VNC + L E G + + + G+ E A+ G++FL++I L +Q+ Sbjct: 420 FIRVNCAALSENLLESELFGYEDGAFSGAKRGGKKGLFEEANNGSIFLDEIGELTQNMQA 479 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ I R+ + IP++V+VIA T ++ + F LYY ++ + I+IPP Sbjct: 480 KLLRVLQEKEIVRVGGTKAIPVNVRVIAATNVNIEKAMADGTFREDLYYRINRYPISIPP 539 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R I AL ++ + + + +K + AL L + WPGN EL +V+ + Sbjct: 540 LRQRLEDIEALSVRLIQKINRDYGRNVKGLSQQALRALSAYHWPGNVRELENVLGRAMIF 599 Query: 554 SDNGR--IRVSDLPEHLFTEQATDDVSATRLS--------TSLSFAEVEKEAIINAAQVT 603 + I LP ++ D T S++ + E I + Sbjct: 600 LNPHMEWIEKDHLPVFELEQKENDTDQGTGFDFPDIEGEKLSVAVEKFEAHLIQQTLEKH 659 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + LG+ L+ KM ++G+ Sbjct: 660 HFNRTKTAKALGVSIRNLYYKMDKYGL 686 Score = 85.5 bits (211), Expect = 5e-15, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 59/177 (33%), Gaps = 9/177 (5%) Query: 168 EQTTAADLPLTLAIAREVGNLLLTDSLLAET-NRHLNQLNALLESMDDGVISWDEQGNLQ 226 ++ + + +A V L+ L + + + + S DG+I D + Sbjct: 81 QRKHEDTIVMPGKMAYIVFQLMEEKQHLIQMLKEQTYKYDRIFNSTHDGMIFIDINEEII 140 Query: 227 FINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVI 286 N A +++ GR I E++ + + +K P + + + V Sbjct: 141 LFNHMAEKMVGKKREEVIGRPIKEVIPSTK-MPRILKTRVPEYNQKQLL---GDHLQIVT 196 Query: 287 TLKPIIETQGT--SFILLLHPVEQMRQLMTSQLG--KVSHTFAHMPQDDPQTRRLIH 339 T PII+ G + + + +L +V + Q + ++ Sbjct: 197 TRLPIIDEGGRLLGALCVFKDITDAVELAEEVTNLKQVRTMLEAIIQSSDEAISVVD 253 >UniRef50_B0TAR7 Sigma-54-dependent transcriptional activator (Nifa/ntrc family) n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TAR7_HELMI Length = 767 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 137/563 (24%), Positives = 228/563 (40%), Gaps = 71/563 (12%) Query: 138 QVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAE 197 + A P + + + L + +A+ ++ L L E Sbjct: 192 SRMHIVAETGQPELGRRQMIGDAVILTNRTPIVVDGQVKGAVAVFEDISALEKVTHELHE 251 Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 +L +LES+ DG+ D +G + ++N AR++ GR + L A Sbjct: 252 VKELKERLQLVLESVQDGICVVDREGCVTYVNPAYARIVNGRREDLIGRDVRNLSPRGAR 311 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLH---PVEQMRQLM 313 +QA++ P+ + + + PII + + T + ++ V+ + + + Sbjct: 312 -RQALETGKPVLG---HLAQKDGDVTVIADAYPIIVDGEVTGVVSIVKTLTDVQTLAEKL 367 Query: 314 TSQLGKVSH-------------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + + FA + R + +AA VL+ GE G G Sbjct: 368 NRMAARAEYLEQELRRAKKPGGAFARFIGQSGKVRDALAMAEKAAEGPATVLIRGESGTG 427 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHG 417 K L+++ IH R+ GP+I VNC + L E G + T +L + ELAH Sbjct: 428 KELVAEGIHESGPRSKGPFIRVNCAAIPETLLESELFGHEKGAFTGAIKRKLGKFELAHK 487 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L +Q+ LL+V+++ I+R+ +DVK+IA T DL LV + RF Sbjct: 488 GTLFLDEIGELDKGMQAKLLRVLQEKEISRIGGEETFTVDVKIIAATNQDLERLVAEGRF 547 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY L+ I +PPLR R+ IP LV + L+ + L+ I DAL L+ +W Sbjct: 548 REDLYYRLNVIPILLPPLRERKEDIPLLVEHFLQQTGREQGKALRGIHSDALEALMHYSW 607 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS----------- 585 PGN EL ++IE + SD I SDLP +L A ++ L Sbjct: 608 PGNVRELANLIERVVTLSDGPWITDSDLPTYLRERAAEENHEGRPLEERPAGGRYGAGER 667 Query: 586 ----------------------------------LSFAEVEKEAIINAAQVTGGRIQEMS 611 L++ E++ I A + G + Sbjct: 668 GYNGREHKIGRSVGGISGSLFRENRWEEQGDAPLLTWEAYEQQIITLALRRH-GSFNAAA 726 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQ 634 LG+ T+ K +++GID + Sbjct: 727 KALGLTHKTVAAKARKYGIDKNE 749 >UniRef50_C2W7W3 Transcriptional regulator n=4 Tax=Bacillus RepID=C2W7W3_BACCE Length = 617 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 205/472 (43%), Gaps = 34/472 (7%) Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 L E + L ++ +G+ DE G +Q N +R + + + G+ Sbjct: 151 QKYMKQQLEEARHVIEWLRLSFDTAYEGIAIVDENGVIQMFNDTYSRFVGVTKEEAIGQR 210 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLH 304 ++ L +K P ++ + Q+ V+ PI + G +L+ Sbjct: 211 AENVIE-NTRLPVVLKTGVPERNQVHRLQGQN----LVVHRMPIWKQGRVIGAVGMLIHE 265 Query: 305 PVEQMRQLMTS-------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + + +++ + K F + + R+AARS V Sbjct: 266 GISDIYKILERFDQKDGAVKPLFSKPKKKQIHFEDILGESQPISETKKMARKAARSKASV 325 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-G 407 L+ GE GVGK ++AIH GP+I+VNC D L E G T + G Sbjct: 326 LITGESGVGKEQFARAIHGAGVTNNGPFISVNCAAIPDNLLESELFGYAEGAFTGAKKNG 385 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + + ELA+ GTLFL++I +++ Q +L+V+++ I R+ IP+D ++IA T D Sbjct: 386 KAGKFELANHGTLFLDEIGDMSLLTQVKILRVLQEREIERIGGTHPIPVDFRLIAATNKD 445 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDD 526 L +V + F LY+ LH I IPPLR R+ IP +V L+ L + ++ +D + Sbjct: 446 LKQMVREGTFREDLYHRLHVIPIQIPPLRFRKQDIPLIVEEHLQKLCQMYNAEEKTLDKE 505 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQAT--------DDVS 578 L + WPGN EL +V+E L SD+ IR DLPE + + Sbjct: 506 VLRLMFHYNWPGNVRELINVLERLFALSDDVHIRAKDLPEEFYYRDMEQKKLVPMIQSLP 565 Query: 579 ATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + + + E E+ I + G + +ALLGI R TL+ K+ + I Sbjct: 566 AKQEAMKVVRDEEERGLIERVLKEAKGNKSKAAALLGISRATLYNKLSRFKI 617 >UniRef50_C0QF87 Transcriptional regulator (PAS/PAC domain protein) n=2 Tax=Bacteria RepID=C0QF87_DESAH Length = 710 Score = 546 bits (1408), Expect = e-154, Method: Composition-based stats. Identities = 125/498 (25%), Positives = 212/498 (42%), Gaps = 35/498 (7%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 L T ++ + I +++ +L S L + N L +++E DG+I D++ Sbjct: 218 LCNITPIMTMDNINGAIIIFQDLTDLECIASELESVTKLYNTLQSVMEIAYDGIIVIDKK 277 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + N A L G+ + +++ + L++ IK H Sbjct: 278 GVITMANQSIADFLHKSRENMVGKPVEDIIE-NSRLRKVIKTGVAELHQLQFINGN---- 332 Query: 283 DAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTSQLG----------------KVSHT 323 V++ PI+ G ++L + +R L + T Sbjct: 333 PHVVSRMPIVRDGKALGAVGMILFSNFKDVRNLAQKFIRLDQKVAYYKNQIRNDMSNKIT 392 Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F + +++ AA+SS +L+ GE G GK L++Q+IH + VN Sbjct: 393 FDQIITSHEAFKKIKERAEIAAQSSSSILITGESGTGKELMAQSIHEAGVSRDKRLVKVN 452 Query: 384 CELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQV 439 C L EF G T + G+L +L LA GGTLFL++I ++ LQS LL+V Sbjct: 453 CAAIPADLLESEFFGYAPGAFTGAQKQGKLGKLALADGGTLFLDEIGDMSPNLQSKLLRV 512 Query: 440 IKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRR 499 ++ + + + + +VIA T DL +V++ RF LYY L+ IPPLR R Sbjct: 513 LQDKSFEPIGSNKTTHVSFRVIAATNQDLHQMVQEKRFRGDLYYRLNVIHFHIPPLRERP 572 Query: 500 GSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGR 558 I LV+ + + ++ I DDA+ L+ WPGN EL +V+E +A Sbjct: 573 QDIILLVHFFIEKYNHILGSAIQDISDDAMTVLLEHTWPGNVRELENVVERVANFVKGNL 632 Query: 559 IRVSDLPEHLFTEQATDDVSATRLSTS------LSFAEVEKEAIINAAQVTGGRIQEMSA 612 + + DLP +L ++ S S + +K AI +A + G + + Sbjct: 633 VDIDDLPPNLKEKEKKSPSFMAGSPLSTKQRLHKSRDDHDKLAIQSALREADGNKAKAAK 692 Query: 613 LLGIGRTTLWRKMKQHGI 630 +LGI R+ L+ KM + + Sbjct: 693 ILGISRSWLYTKMARFDL 710 Score = 73.5 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 18/162 (11%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 ++ +Q+ +L SM +GV++ D G + IN A R+ + + G+ + L Sbjct: 131 AMFENETLLNHQMQIILNSMHNGVVAMDASGKISRINQAAERLFGITTFQAWGKPV-SLF 189 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE-TQGTSFILLLHPVEQMR- 310 L + + + V +S + + + PI+ I++ + + Sbjct: 190 LKGLELDEVLLKGV----VSIGIKSTYGEHTLLCNITPIMTMDNINGAIIIFQDLTDLEC 245 Query: 311 ---------QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQ 343 +L + + + + D + +I Q Sbjct: 246 IASELESVTKLYNTLQSVMEIAYDGIIVIDK--KGVITMANQ 285 >UniRef50_B0K2Z9 Sigma54 specific transcriptional regulator, Fis family n=5 Tax=Thermoanaerobacter RepID=B0K2Z9_THEPX Length = 575 Score = 546 bits (1407), Expect = e-153, Method: Composition-based stats. Identities = 120/464 (25%), Positives = 208/464 (44%), Gaps = 28/464 (6%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 S+ AE + L+A + DD D G I++ A ++ L G+ ++E Sbjct: 109 LKSIKAEFDLVKTDLDAFMACSDDLACITDGSGLKVRISSSAEKIYGLKPEDLIGKNVSE 168 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVEQ 308 L A K A K + ++T P + + + + Sbjct: 169 LEKNGMYFPSATKIAIEEKKKVTVIQKTKTGRKLLVTATPFFDKDNNIKRIVSISKDITD 228 Query: 309 MRQLMTSQLGK----------------VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 +L T + + Q RLI + A + +L Sbjct: 229 EEKLKTELKQTKELLQKYEEELSSLRIAHLKNSEIIYRSKQMERLIELVNKVAPTESTIL 288 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGR 408 + GE GVGK +L++ IHN S R+ GP+I +NC + L E G + T + G+ Sbjct: 289 IYGETGVGKEVLAKYIHNIS-RSEGPFIKINCGAIPENLLEAELFGYEKGAFTGAKSEGK 347 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 +E+A GTL L++I L + LQ LL+V+++ R+ + I +DV++IA + DL Sbjct: 348 PGLIEVADKGTLLLDEISELPLSLQVKLLRVLQEKEFIRVGGIKPIKVDVRIIAASNKDL 407 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL 528 LV++ +F + LYY L+ +TIPPLR R IP L + L +++ ++ ++ + Sbjct: 408 KELVKEGKFRQDLYYRLNVVPVTIPPLRERVQDIPILAYHFLNMYNEKYGHSKQLTNEVM 467 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 + WPGN EL +VIE + + S+N +I DLP L ++ T+ +S + Sbjct: 468 EIFMKYPWPGNVRELENVIERIVIISENDQITKKDLPGELLNQEETNHSFGVHVSRLMPL 527 Query: 589 AE----VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E VE + I A + G + + +LG+ ++T+ RK+K++ Sbjct: 528 KEASALVEYQLIKQAIEEC-GSSYKAAEVLGVDQSTIIRKLKKY 570 >UniRef50_A4J599 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J599_DESRM Length = 575 Score = 545 bits (1406), Expect = e-153, Method: Composition-based stats. Identities = 122/514 (23%), Positives = 215/514 (41%), Gaps = 56/514 (10%) Query: 139 VLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAET 198 +++G + G + + L Sbjct: 95 RYHALVC-----RNNQGDILGVL---SYDQVFHDLAL---------------------RV 125 Query: 199 NRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL 258 ++NA++E++D+ V D + N++A + + A G+ I T Sbjct: 126 CETEARINAVVETVDEAVCIVDNNDMVTSWNSRAEELYGIKAQDIIGKPICSFFTN---- 181 Query: 259 QQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS-- 315 + + + + +I P+ + + V ++ QL Sbjct: 182 LVVTRVNKEWQEIRSLHHQPVPGTHVLINATPVRLGPKVIGGVTAERDVTEIVQLNQKLN 241 Query: 316 --------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 + + FA + + LI+ R+AA +S VLL GE G GK Sbjct: 242 QASSQVQRLEKEIDKFSTDRNPFAAVKGHHKRLTELINVARKAALTSAVVLLRGESGTGK 301 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L ++AIH S R + +NC + E G + T + G++ E+A G Sbjct: 302 ELFAKAIHEASPRIDKKFCVINCAAIPPSLFESEMFGYESGAFTGADKKGKIGVFEMADG 361 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I L +++Q LL+V++ GV R+ I +DV++IA T L ++ F Sbjct: 362 GTLFLDEISELPLDMQVKLLRVLQDGVFFRIGGSTPIKVDVRIIAATNRSLEDMMAHGTF 421 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAW 536 LYY L+ + IPPLR RR IP LV L+ + ++ ++ K++ +A ++ +W Sbjct: 422 REDLYYRLNVVSLEIPPLRERREDIPELVYLFLQEFSQLYNKQISKLEPGVMATFLAYSW 481 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 PGN +L ++IE + + ++ + S +PE L D +AT + + + E+E I Sbjct: 482 PGNIRQLKNIIERMVILTEGDTVLESAIPESLKLSSRQDQATAT-IGLASVTEQTERELI 540 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 I + G E + +LGI R+TL+ KM Q GI Sbjct: 541 IRTLKQVNGNRSEAARMLGIPRSTLYYKMHQLGI 574 >UniRef50_Q3ACI2 Sigma-54-dependent transcriptional regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3ACI2_CARHZ Length = 589 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 133/552 (24%), Positives = 225/552 (40%), Gaps = 68/552 (12%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE-------------VGNLLLTD---- 192 +F+ KG L C + + PL + + + D Sbjct: 30 VFNLKGELLAFYCKVCENCKFKESPFPLEHELLNMCFNDELKIIVESIIEEVDRLDDLVI 89 Query: 193 -----------SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 + E + +L A++ES DG+ D G IN R+ + Sbjct: 90 KVKTVKISSLLKKIKELSFLQEELEAIIESSYDGIYVSDCTGKTLRINKAYERITGIKKD 149 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--F 299 GR + EL + KQ K + + V+T P+++ G Sbjct: 150 EVIGRRLDELKAEGYFSEIVYKQVVKEKRPVTILQKIKNEKEVVVTGNPVLDNSGEVKRV 209 Query: 300 ILLLHPVEQMRQLMTSQLG-----------------------KVSHTFAHMPQDDPQTRR 336 + + + ++ L + F P + Sbjct: 210 VTNVRDISELNMLRRELAEVKEKSKHYQRKIVELQEKLTLFCQAQQDFKGFIIKSPLMKD 269 Query: 337 LIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEF 396 +I+ + AR+ VL+ GE G GK ++++ IH S R ++ VNC + + EF Sbjct: 270 VIYKALRVARTDTTVLIIGESGTGKEVIARFIHFNSLRKDKAFLPVNCGAIPENLMESEF 329 Query: 397 IGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARR 452 G + T + G++ ELA GGTLFL+++ L + LQ LL+ ++ I RL + + Sbjct: 330 FGYEPGAFTGALKTGKMGFFELAQGGTLFLDEVGELPLHLQVKLLRALQTKEIMRLGSTK 389 Query: 453 LIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRS 512 I +DV++IA T +LA LVE+ +F LYY L+ I IPPLR R+ I + L Sbjct: 390 PIKVDVRIIAATNRNLAKLVEEGKFREDLYYRLNVISIEIPPLRKRKEEIIPMAMEFLTR 449 Query: 513 LEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQ 572 + +++ + K + L L WPGN EL +VIE+ + S I V DLP HL + Sbjct: 450 INEKYGSEKKFTREVLEILKEYKWPGNIRELENVIEHAYVVSQ-DEINVEDLPIHLDSLY 508 Query: 573 ATDDVSA---------TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 A ++ + + VEK+ I +A G +++LG+ ++T+ R Sbjct: 509 GEPGNIALIRKTLQNRENITLDEAISLVEKKLIEDALLKY-GTETRAASVLGVNQSTISR 567 Query: 624 KMKQHGIDAGQF 635 K+K++ ID + Sbjct: 568 KIKKYNIDVKKI 579 >UniRef50_C9KM56 Sigma-54 dependent transcriptional regulator/sensory box protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KM56_9FIRM Length = 560 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 127/494 (25%), Positives = 214/494 (43%), Gaps = 31/494 (6%) Query: 163 LACPVEQTTAADLPLTLAIA-----REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVI 217 ++ + A + + + E + D LL E +L +LES+ DG+ Sbjct: 71 VSSEGDNGRQAVIEMVRFLESDFIMNEASEIHGVDKLLHENALMQERLQMILESVQDGIC 130 Query: 218 SWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFES 277 D G + ++N R++ G+ + E ++ + Sbjct: 131 VVDRSGEVTYVNPSYLRIVHKTPEMVVGQNVFETAADGNRCA-VLRSGIA---RIGSIRH 186 Query: 278 QHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS----------------QLGKV 320 + V + PI + + + ++ + +++ LM + K Sbjct: 187 KKDGTTIVANVNPIFVDGEIAGVVSVIKDITEIQTLMERLSQVSAKAEYLEQELLRTKKT 246 Query: 321 SHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYI 380 + FA+ + ++ +AA SS VL+ GE G GK ++++ IH S R GP+I Sbjct: 247 AQAFANYIGKSGKVVDVLALASKAADSSANVLIRGESGTGKEVIAEGIHYASGRRRGPFI 306 Query: 381 AVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALL 437 VNC A L E G + T +L + ELA+ GT+FL++I L LQ LL Sbjct: 307 RVNCGAIPGALLESELFGHEKGAFTGAVRRKLGKFELANHGTIFLDEIGELDKNLQVKLL 366 Query: 438 QVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRM 497 +V++Q R+ I +DV++IA T DL +V + F LYY L+ I +PPLR Sbjct: 367 RVLQQKEFDRVGGEETIHVDVRIIAATNRDLEAMVREGTFRDDLYYRLNVIPIILPPLRD 426 Query: 498 RRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDN 556 R IP LV + + + K ++ I DA+ + WPGN EL +VIE + D Sbjct: 427 RPDDIPLLVEHFIEKISKENKKDVRGITPDAMQMFMHYRWPGNVRELENVIERVITLMDT 486 Query: 557 GRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGI 616 I + LP ++ + A +V + T L + E EK+ I NA + G + LL I Sbjct: 487 DLITAAMLPSYIKGDIAGREVQSLADDTVLPWEEYEKQIIANALRQ-GTSFNGAAKLLRI 545 Query: 617 GRTTLWRKMKQHGI 630 T+ K +++G+ Sbjct: 546 SHKTVAAKARKYGL 559 >UniRef50_C9S238 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Geobacillus RepID=C9S238_GEOSY Length = 467 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 126/473 (26%), Positives = 212/473 (44%), Gaps = 28/473 (5%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N + E + L ++ LL + D V+ D +G + N+ A ++ G+ Sbjct: 2 NERDLERARQERLKLLREIEGLLSFITDPVLVVDAKGYIVHTNSSAEQIFERSQIIMIGK 61 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPI-IETQGTSFILLLH 304 +TE + A L Q IKQ P ++ S + ++ L P+ + Q IL L Sbjct: 62 HVTEFV-QSASLLQYIKQGKPATNLAVCIMSAKGTRLEFSCRLHPLLVNAQVEGAILFLT 120 Query: 305 PVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 +++ S + + P L + A+S VL+ GE G GK +L Sbjct: 121 KPILLQEQEQSSRYGTRFSLDDVIGSSPAITALKEQVMKIAKSESTVLIRGESGTGKEVL 180 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTL 420 +Q+IH S R GP++A+NC +A L E G + T + G + R ELA GGTL Sbjct: 181 AQSIHRLSHRNKGPFVAINCAAIPEALLESELFGYEEGAFTGAKKGGKPGRFELARGGTL 240 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I + + LQ+ LL+V+++ I R+ + I +DV++IA T DL ++ N+F Sbjct: 241 FLDEIGDMPLYLQAKLLRVLQERRIERVGGTKSIEVDVRIIAATHKDLESMIANNQFRED 300 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGN 539 LY+ L+ + +PPLR R+ + L+ + KR + AL ++ WPGN Sbjct: 301 LYFRLNVIPLYVPPLRERKEDLYELIQYYMYKFCKRLGKEPKRFSSQALKKIFDYHWPGN 360 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLF-----------TEQATDDVSATRLSTSLSF 588 EL +++E + + +S LP + E + + Sbjct: 361 IRELENMVEYIVNLEIGDLVTISSLPASIREMSKDQRHDMEEEMKEPQTVSHLPKSLYKI 420 Query: 589 AEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 EVE++ II A Q G ++ + LGI TL+RK+++ +RR Sbjct: 421 NEVEEQLIIQALQRFGTSTEGKRKAAEALGISLATLYRKLEKMK------RRR 467 >UniRef50_A1HRK7 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRK7_9FIRM Length = 575 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 122/472 (25%), Positives = 206/472 (43%), Gaps = 30/472 (6%) Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRA 247 +L L + R L A+ + + + + D G + N +A ++ + G Sbjct: 108 QILICGLWEQFRRQQAVLTAVADIVGEALTVVDTSGKVSLWNKRAEQLYGIAPEMILGHP 167 Query: 248 ITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPV 306 I E ++ + + + + +I PI + I + Sbjct: 168 IEEFF-SNLIITAVLASSQAISDK---YHQPKPGAHVLINAAPICCDGSIIGSIAAERDI 223 Query: 307 EQMRQLMT----------------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 ++ L ++ FA + + R+ I R+ A SS P Sbjct: 224 TEIVNLTQQLCATNAKVMSLKREIKEINAQPDPFAAICGHNTVLRQEIATARKIAISSVP 283 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-EN 406 VL+ GE G GK + ++AIH S R GP++ VNC EF G T + Sbjct: 284 VLIRGESGTGKEVFARAIHTASRRR-GPFVVVNCGAIPPTLFESEFFGYQPGAFTGADKK 342 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ ELAHGGTLFL++I L E+Q LL+V++ R+ R + +DV++IA T Sbjct: 343 GKPGLFELAHGGTLFLDEIGELPKEMQVKLLRVLQDKSFYRVGGDRPVQVDVRIIAATHR 402 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDD 525 +L ++EQ F LYY L+ + +PPLR RR IP LV+ ++ + K++ Sbjct: 403 NLEAMIEQQEFRHDLYYRLNVVSLYLPPLRQRRDDIPELVHRGIQQFASLHGREIVKVEP 462 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS---ATRL 582 + +A + WPGN ELY+V+E L + +D G ++ +DLP L Sbjct: 463 EVMAVFLEYDWPGNVRELYNVLERLVILADGGVLKFADLPADLQQFGLLLPKKINLTAAQ 522 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 + + +E+ I+ A G R + + LGI R+TL+ KM++ G++ + Sbjct: 523 NLPAATERMERTIIMQALAAAGFRKAQAAKKLGIPRSTLYYKMQRLGLNTSE 574 >UniRef50_A7IC82 GAF modulated sigma54 specific transcriptional regulator, Fis family n=6 Tax=Rhizobiales RepID=A7IC82_XANP2 Length = 696 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 129/676 (19%), Positives = 229/676 (33%), Gaps = 72/676 (10%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWNVP-HQAQGVTFASIYRRKKAMLTLGQAA 60 SGA + ++ I SW RC F + R + + + Sbjct: 32 SGAPVPEDA-LAQPILRSWTRCAARGLGPQSRSRMEPLTDGEFTARRERHETLRRRCRPE 90 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 LE + + + D + +L G + + + G +E GT A+ Sbjct: 91 LEALHAAARAADSIVILTDPSGLVLDTVGSADFADRAAKVALRPGVSWSEAETGTNAIGT 150 Query: 121 AAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLA 180 A + + V+ +H+ + + A P+ D G L G + L+ P L L Sbjct: 151 ALVERRPVEVRGAEHYAEANGILSCAAAPIHDPFGELVGLLDLSGPASVPHLHALALVEL 210 Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 A +V + + + + + + L + +G++ + E L N +L L Sbjct: 211 AAGQVEHRMFEGAFPDHSLVRFHADPSFLGTAREGILVF-EDYRLIAANRPGLALLGLGW 269 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI 300 A + +L + + P+ + Sbjct: 270 DALGAKRFGDLFEGSL--------GKAGEERRVRTRRGDVAMRLERQGMPVRTVAPRATP 321 Query: 301 LLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + +Q G F T R + + + PVL+ GE GVG Sbjct: 322 SAERQSAPVPAQAPAQTGP---RFD------AATERDLGRAVRLMEAGVPVLIQGETGVG 372 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAH 416 K + ++ IH R A + AVNC + + E G + T G A Sbjct: 373 KEVFARQIHRRGNRGARAFAAVNCAALPEGLIESELFGYEEGAFTGARRAGFKGLFREAD 432 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GG LFL++I + + LQS LL+V+++ +T L R + +D ++ + DL VE+ Sbjct: 433 GGVLFLDEIGDMPLSLQSRLLRVLQEREVTPLGGGRPVAVDFALVCASHRDLKQRVEEGS 492 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAW 536 F LY+ + + +T+P LR ALV+ + + + A L W Sbjct: 493 FRADLYFRIAQYTVTLPALRT-LADREALVDRLWAEMAGASPGAPTLSVECRAALAGYGW 551 Query: 537 PGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFT---------EQATDDVSATRLSTSL 586 PGN +L V+ L ++ + V LP + + A + T+ Sbjct: 552 PGNFRQLVGVLRVLQALAEPGESVGVEALPADVRSAPLEWRGAGRPAEIMPPGAQADTAP 611 Query: 587 S-------------------------------------FAEVEKEAIINAAQVTGGRIQE 609 S V + A+ A +GG + + Sbjct: 612 SQEFGARDFGARDLGTRDLGTRDFGAGDVGARDLGACDLGAVTRAAMDAALAASGGNVSQ 671 Query: 610 MSALLGIGRTTLWRKM 625 + LGI R+TL R + Sbjct: 672 AARRLGIHRSTLHRHL 687 >UniRef50_A3ESE7 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Leptospirillum sp. Group II RepID=A3ESE7_9BACT Length = 473 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 115/437 (26%), Positives = 212/437 (48%), Gaps = 14/437 (3%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVLQQ 260 A+L+S+++GV++ + ++N A +L+ + +++ VL + Sbjct: 38 QAILDSLEEGVVAIGLDKKILYMNRAAREILKNREDSPTPSDCRKVVNSSECQARCVLAK 97 Query: 261 AIKQAHPLKHVEATF---ESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQL 317 ++ P++++E + + + + L + + + H + Q+ L + Sbjct: 98 TVETGEPIRNMEISLVDALGRRRVLRLNTALLKDSSGKVFGGVEIFHDISQIVAL--KEE 155 Query: 318 GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAG 377 K ++F + + + L A+S VL+ GE G GK L++ A+H S R G Sbjct: 156 LKGRYSFGRIIGRSEKMQELFDLLPVIAQSKSTVLIEGESGTGKELVAHALHENSPRREG 215 Query: 378 PYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQS 434 P++ +NC + L E G T R R ELA GGTLFL++I ++ +Q Sbjct: 216 PFVKLNCAALSEGVLESELFGHVKGAFTGAVQSRPGRFELASGGTLFLDEIGEISPSMQV 275 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ R+ + + +DV+VIA T DL +E+ F + LYY L +T+PP Sbjct: 276 KLLRVLQEEEFERVGGTKTVKVDVRVIAATNRDLKQAMEEGSFRKDLYYRLRVIPVTLPP 335 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R+G +P L+ + + ++ + +A+ L++ +PGN EL ++IE+ AL Sbjct: 336 LRERQGDLPLLIQSFIERYNAELGKNIQGLTSEAMKVLLNYHYPGNIRELQNIIEHAALL 395 Query: 554 SDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSAL 613 ++ RI + LP L Q+ + VEKE I A +GG + E++ Sbjct: 396 CNDSRIDLRHLPGDLLPAQSQSSFLELAMMEENPVRYVEKELIRLAMAESGGNVSEVARK 455 Query: 614 LGIGRTTLWRKMKQHGI 630 L +GR+TLWR++K+ + Sbjct: 456 LSMGRSTLWRRLKEMKL 472 >UniRef50_A6LV86 Sigma54 specific transcriptional regulator, Fis family n=6 Tax=Bacteria RepID=A6LV86_CLOB8 Length = 590 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 118/505 (23%), Positives = 223/505 (44%), Gaps = 40/505 (7%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D ++ G I + V + + T L +L+++ Sbjct: 96 PVIDKNNKIIGIITHTDFIND--------------LVEKISKKCRDIKNTKLGLTELDSI 141 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 +E DG+ D + N IN + L GR + +L + Q A Sbjct: 142 IECSYDGIYITDGEANTIKINNAYESITGLKRAEVLGRNMKDLEKEGVISQSATLLVLKN 201 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTSQLGKVSHTF-- 324 + + + +++ PI + G +++ + V Q+ +L T Sbjct: 202 RKTTTIQQEFKTGVKVLVSSNPIFDKNGKIIMVVTNVRDVTQLYELKEQLQKNKEITLKY 261 Query: 325 --------------AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 + + +D +T +I + A+ +L+ GE G GK +++ IH Sbjct: 262 VSEIEEMRTQLLNTSEIVAEDHKTIEIIQLANRIAKVDTTILMLGETGAGKDQIAKYIHK 321 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIE 426 S+R+ +I VNC + + EF G + T + G++ E+A GGT+FL+++ Sbjct: 322 VSKRSKKQFIKVNCGAVPASLIESEFFGYEKGAFTGANKEGKIGLFEMASGGTIFLDEVG 381 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L +++Q LL+V+++ + R+ + I IDV+V+A T DL ++++ +F LYY L+ Sbjct: 382 ELPMDMQVKLLRVLQEMEVVRIGGTKPIKIDVRVLAATNRDLEDMIKKKQFREDLYYRLN 441 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 + IPPLR R+ I L+N L L K+++ DAL + WPGN EL ++ Sbjct: 442 VIPLYIPPLRERKHDILPLINFFLTQLNKKYNFNKIFASDALNCMYEYNWPGNVRELKNI 501 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQA---TDDVSATRLSTSLSFAEVEKEAIINAAQVT 603 +E + S++ +I+ SDLP+++ T + ++ + +EK+ I A Sbjct: 502 VERAVIMSEDDKIKRSDLPKNIIGSNGMIVTLNTFEEGINLKETLDAIEKKLIKKAYDKY 561 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQH 628 G ++ + LGI +T RK +++ Sbjct: 562 -GNVRAAAKSLGIDASTFVRKRQKY 585 >UniRef50_B9M8I7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Geobacter sp. FRC-32 RepID=B9M8I7_GEOSF Length = 678 Score = 543 bits (1400), Expect = e-153, Method: Composition-based stats. Identities = 127/486 (26%), Positives = 204/486 (41%), Gaps = 41/486 (8%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 +A V + + +++ ++ L L +LE +GV DE Sbjct: 208 IATAVPIYQNMKNKGVIFVIQDMTDVEGVAHELETVKELKMTLETVLEVAYEGVAVLDEA 267 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + +NA+ + G I + L PL +E Sbjct: 268 GMITLVNARFCNKIGKPKDNIIGENINRFIPLS-------HNQMPLSVLEI------NAK 314 Query: 283 DAVITLKPIIETQGTS--FILLLHPVEQMRQLMTS----------------QLGKVSHTF 324 V++ PI + T + + ++ + ++ ++ S+T Sbjct: 315 PCVVSTLPITKEGNTKGFVVKIYEDLDNLADIVQQINRINMQLNYYKNELYKVNGTSYTV 374 Query: 325 AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNC 384 + D + L Q RS+ VL+ GE G GK L + +IHN S R P+I VNC Sbjct: 375 GSIVCRDERIATLKSQVLQVGRSNSTVLITGESGTGKELFAHSIHNASNRRKEPFIKVNC 434 Query: 385 ELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 E G + T G+ + ELA GT+FL++I + + LQS LL+VI Sbjct: 435 SAIPGELAEAELFGYEDGAFTGARKQGKPGKFELADCGTIFLDEIGDMPLALQSKLLRVI 494 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 + I R+ + +DV++IA T DL +V + F LY+ ++ E+ IPPLR RR Sbjct: 495 QDKEIERVGGVKARKVDVRIIAATNRDLKRMVTEGTFREDLYFRINVVELKIPPLRDRRK 554 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 IP L + +R + R++ I + AL L WPGN EL ++IE + ++G I Sbjct: 555 DIPLLADTFIRKYNNQLGRRVEGITEAALEALTRYDWPGNIRELENIIERMLNYRESGLI 614 Query: 560 RVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRT 619 + DLPE + AT + A +E E I A GG + + LLGI R+ Sbjct: 615 ELQDLPEEIVGRPGGMAAKAT-----QTLAVMEMETIQAALAEAGGNKSKAARLLGISRS 669 Query: 620 TLWRKM 625 L+ K+ Sbjct: 670 KLYEKL 675 Score = 49.7 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVL-RLDATASQGRAITEL 251 LL T+ +L+ ++E++ G+++ + G + N A +L + + G + EL Sbjct: 123 ELLDRTDYLFRELSGVIENVPAGILATSDTGMVTMANQYAKNILGGVQSGRYIGDYLQEL 182 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMR 310 + + + + +H + + T PI + + I ++ + + Sbjct: 183 ERDFSPVISG--------NWMLPRKIEHNALKLIATAVPIYQNMKNKGVIFVIQDMTDVE 234 Query: 311 QLMTS 315 + Sbjct: 235 GVAHE 239 >UniRef50_C1P9P9 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Bacillaceae RepID=C1P9P9_BACCO Length = 457 Score = 542 bits (1398), Expect = e-152, Method: Composition-based stats. Identities = 120/453 (26%), Positives = 211/453 (46%), Gaps = 26/453 (5%) Query: 202 LNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQA 261 L+ L A+L + +D + +E+ + + N A R + + IT+ ++ Sbjct: 5 LSYLQAVLSAENDAITIVNEKKEVIYWNDAAVRTYNIPKEMILTKKITDFFRDDDLM--V 62 Query: 262 IKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTS---- 315 +K + + V+ +PI + +G + + + Q+ +L + Sbjct: 63 LKVLRTKARITDQYHRPRPDKHVVVNARPIFDNRGRLIGAVSVERDITQIVRLNDNLVST 122 Query: 316 -----QLGKVSHT------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALL 364 +L + +T F+ + R I +AA++ L+ GE G GK + Sbjct: 123 SIELNELRQKMYTSYEETPFSKLKGKSRALRDTIQIAAKAAKTDAVTLILGESGTGKEIC 182 Query: 365 SQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTL 420 ++AIH S R GP+I VNC A E G + T + G+ ++E A GGTL Sbjct: 183 ARAIHEASARKNGPFIPVNCGSIPSALFESELFGYEPGTFTGAEKKGKAGKIEEADGGTL 242 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I L +++Q LL+V+++ VI R+ I+V+ IA T D+ ++++ F Sbjct: 243 FLDEIGELPLDMQVKLLRVLQEKVIYRIGDASGRKINVRFIAATNQDIEKMMKEKTFRSD 302 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGN 539 LYY L+ +IT+PPLR+R IP L L+ ++ ++ DAL+ L + WPGN Sbjct: 303 LYYRLNVIQITMPPLRVRTDDIPVLARYFLKQFAVQYKMPEPELAPDALSFLQAYHWPGN 362 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE--VEKEAII 597 EL +++E + + S+ I + L + SA S +L + +EK+ I Sbjct: 363 VRELRNLMERMVILSEKPFIDRASLLRFFQGNETQPSGSAIPESGTLPVEKENMEKQLIE 422 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 A + GG + LGI R TL++K+K+ GI Sbjct: 423 KALRKAGGNKSAAAKELGISRVTLYQKLKKFGI 455 >UniRef50_UPI0001C424D6 transcriptional regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C424D6 Length = 567 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 205/465 (44%), Gaps = 34/465 (7%) Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + +L+ ++ L ++E DGV+ D+ G + ++ + A L + G+ T+ Sbjct: 112 LEEILSASSEKTELLETVMEFAFDGVVMVDKDGYITMLSKEYAEFLNVRVEDVIGKHATD 171 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVE 307 ++ + K P + + + T PII+ G +L V Sbjct: 172 VIE-NTRMHIVAKTGKPEVADLQRIKGDY----MIATRVPIIKNGEITGAVGRVLFQNVG 226 Query: 308 QMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 L + K ++TF H+ D + H +AA S V Sbjct: 227 GFNSLYKRVKLMETELKKYKGEFREQNKATYTFHHIVGDSDSIIKAKHQAERAANSDSNV 286 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGR 408 LL GE G GK L + AIHN RA G ++ VNC L E G + T + G Sbjct: 287 LLLGESGTGKELFAHAIHNAGSRAPGSFVKVNCAAIPPDLLESELFGYEEGSFTGAKKGG 346 Query: 409 LSR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 E A GGT+FL++I L + +Q L+V+++ + R+ + PIDV+VIA T + Sbjct: 347 KKGKFEAADGGTIFLDEIGELPLHMQVKFLRVLQEKEVERVGSTTSKPIDVRVIAATNRN 406 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDD 526 L +V++ F L+Y L+ I IPPLR R + L + + L ++ I D Sbjct: 407 LEEMVDKGEFRLDLFYRLNVVAIHIPPLRDREKDLGQLCLHFIEKLNPIMKKKVDGISKD 466 Query: 527 ALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLSTS 585 A L WPGN EL +VIE DNG I+ LP L + V S + Sbjct: 467 AQRLLHQYKWPGNIRELENVIERALNMLDNGTVIKSEHLPAKLTDTPSNHSVE----SLA 522 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +S + EK A++NA + T G + ++LLGI R+T + K+ ++ + Sbjct: 523 VSIEKAEKTALMNALKQTKGNRSKAASLLGISRSTFYEKLTKYQL 567 >UniRef50_A1HRA8 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRA8_9FIRM Length = 621 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 128/484 (26%), Positives = 215/484 (44%), Gaps = 29/484 (5%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHL----NQLNALLESMDDGVIS 218 + Q L + + + +A + +L+ DG+IS Sbjct: 150 ITGKSAQKHHQPYVLIKSGSEGIAQAAAEAKRIAAARELEKAKASLFRTVLDFAYDGIIS 209 Query: 219 WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQ 278 ++ + N A R+ ++D A+ G+ IT++ L++ + Sbjct: 210 VNQDQRITIFNPIAERLTKIDGAAAIGKKITDIWP-ELGLEKVLTTGRDELGQLLKVSGT 268 Query: 279 HQFIDAVITLKPII-ETQGTSFILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQD 330 + PI+ + + ++R+ + ++ + TF + D Sbjct: 269 R----VLCNKVPIVVNGKPVGAVATFQDAGNIQQMEARIRREIYARGHVATFTFEDIVGD 324 Query: 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390 PQ R +H ++ A++ VL+ GE G GK + +Q+IHN S RA GP++A+NC Sbjct: 325 SPQIRHTVHIAQEFAQTHSSVLILGETGTGKEVFAQSIHNASARANGPFVAINCAALPSQ 384 Query: 391 ALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 L E G T + G+ ELAHGGT+FL++I + Q LL+V+++ + Sbjct: 385 ILESELFGYVGGAFTGASQKGKPGLFELAHGGTIFLDEIAEMDYVTQGKLLRVLQEKKVM 444 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 RL + R+IP+DV+VIA T +L+ LV +N+F LYY L+ + +PPLR R I Sbjct: 445 RLGSDRVIPVDVRVIAATNQNLSRLVRENKFRADLYYRLNVLRLKLPPLRERGADIIRYA 504 Query: 507 NNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE 566 L + RL AL RL WPGN EL + IE + ++ + + Sbjct: 505 EFFLEKHSAAQNRRLAFTPAALERLARHPWPGNVRELQNTIERIVAVCRQPQVDAGLVAQ 564 Query: 567 HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 L + + ++ A+ EKE I A + G+ E + LLG+ R+TLWRKMK Sbjct: 565 MLEDDADSG--------IEVAAADSEKEQIRQALAIAKGKQGEAARLLGVSRSTLWRKMK 616 Query: 627 QHGI 630 + G+ Sbjct: 617 KLGL 620 >UniRef50_Q89DZ6 Transcriptional regulatory protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89DZ6_BRAJA Length = 627 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 148/637 (23%), Positives = 248/637 (38%), Gaps = 51/637 (8%) Query: 11 GISPLIATSWERCNKLMKRETWN--VPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEYM 68 S IA SW RC K + P + + + L L+D + Sbjct: 29 DASSRIANSWRRCLISHKLDPARQGPPQTLTEAEIRHVAEPMEETIRLATPELDDLAGVL 88 Query: 69 APRECALFILDETACIL-SRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQA 127 + + D A +L SR + G+ AE GT L A + Sbjct: 89 RDAGYCVNLADVNATMLFSRLPGEADAKMFLDWKIYTGSNFAETFEGTNGLGTALAEQKP 148 Query: 128 VKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGN 187 + D+HF+ ++ PLFD GRL G I + E A L LA+ E Sbjct: 149 ILVHRDEHFRAQWHMFSCAVAPLFDQAGRLAGAINITSCREDLERAAHQLALAVTMEATR 208 Query: 188 LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ-GR 246 + + + G++++D+ + A +L L G Sbjct: 209 RMEGAIFRGHFR--NAWIATVPGDGGSGLLAYDDDRRIVGACRSARALLGLTDGMIASGI 266 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPV 306 ++ + ++ L+ + + + P+ T Sbjct: 267 DLSRYVKFDHHAARSADDVVELRRADGSPLGEGHV------APPLRAKSFTGPHAPRRDA 320 Query: 307 EQMRQLMTSQLGKVSHTFAHMP---QDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 R F + DP R + R + PVLL GE GVGK + Sbjct: 321 TIDR-------------FDDLHRLAGRDPGLMRSVKRLRSIGDRNLPVLLHGETGVGKDV 367 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGT 419 ++AIH S RA Y+A+NC ++ + E G + T G + A GGT Sbjct: 368 FARAIHAASNRARNHYVALNCAAMPESLIDAELFGYEAGAFTGARREGSKGLIVQADGGT 427 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + + LQ+ LL+V++ + L A + +P+D+++I+ T DL + E+ F Sbjct: 428 LFLDEIGDMPIALQTRLLRVLENREVWPLGALKPVPVDIRLISATHRDLGRMAEEGAFRA 487 Query: 480 QLYYALHAFEITIPPLRMR--RGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 LY+ L E+ +P LR R R I +R + + + ++ D+A A L + +P Sbjct: 488 DLYFRLRGMEVKLPSLRERADRDDI-------IRQIAREEAPNCRLSDEAWALLSAYPYP 540 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN +L V+ +++NG + +DL LF +A + A E+ I+ Sbjct: 541 GNMRQLRHVLRLAGCTAENGVVTDADLDLPLFGGRAAEP----------DLAAAERATIV 590 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 A + GGR+ E + L + R TL+RK+K I+ Q Sbjct: 591 EALRKHGGRVTEAARALKLSRATLYRKIKHLKIETAQ 627 >UniRef50_B8G208 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Desulfitobacterium hafniense RepID=B8G208_DESHD Length = 655 Score = 541 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 134/641 (20%), Positives = 243/641 (37%), Gaps = 43/641 (6%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQ--AQGVTFASIYRRKKAMLTLGQ 58 ++G N + + + SWER PH G + ++ +L Sbjct: 31 LAGEKVNK-QMVPSEVIESWERSRSYGIDPYGTDPHPVNLSGKEYKNLQE----ILNRYG 85 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 E E + + L++ + + G +C E +GT A Sbjct: 86 FFFERIVELVEQDDLTLYLNTADGLNYHL-----FRSGGMSGHASLG-HCNEKTVGTTAS 139 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 LA + Q + + + Q + P+ + K + G + L + + Sbjct: 140 CLAKLYNQPILLVHPYRYSQNYTQNHGVSAPIHNEKNEVIGALGLGFEDPRFCIQAYSMI 199 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 IA+ L TN + + +++ M GV DE+ +Q N + +L++ Sbjct: 200 SFIAQA-----FDSLYLPLTNGYEKHIQKIIDCMPHGVAFVDERDTVQLYNNKILELLKI 254 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 + + + L + K A + ++ +I LK +E + Sbjct: 255 RRKNNIESELNKHL-ARLGVGAGFKDKQEAAVTCAEIQVDNEKPYKLILLKDRLEGRKPG 313 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 GK TF + + + AR+S PV++ GE G Sbjct: 314 I-----------SPSPEGEGKGLFTFDQIIGESTLLKEAKKVAANVARTSVPVMIHGESG 362 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLEL 414 GK + +QA+H S R GP++A+NC + E G + T + GR+ ++E Sbjct: 363 TGKEMFAQAMHCASPRRNGPFVAINCGALPGELVESELFGYEEGSFTGALKGGRIGKVEA 422 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTLFL++IE + ++ Q LL+V+ G + ++ + + I +DV+++A T DL + Sbjct: 423 ASGGTLFLDEIESMPLKDQIKLLRVLSTGKVQKIGSTKEIQVDVRIVAATKIDLLKHADD 482 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVS 533 F L+Y + F I +P LR R+ I AL ++ L ++ ++K+D + L Sbjct: 483 GLFREDLFYRISTFIIELPALRQRKEDIGALAEYFIKKLASKYDRGKIKMDPVFVDALQR 542 Query: 534 CAWPGNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS----- 587 W GN EL +E + D + + L + V T + Sbjct: 543 YYWRGNVRELEHAMERAIIMLEDGETLMLEHLSPGIQQAYRKRTVEKLVAETVQTTSHRQ 602 Query: 588 --FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 E+ I ++ G + LGI R TL+ K+ Sbjct: 603 GLLELAERRVIEYVLELVDGNQSLAAQQLGINRRTLYTKLN 643 >UniRef50_C0GEJ3 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GEJ3_9FIRM Length = 462 Score = 540 bits (1391), Expect = e-152, Method: Composition-based stats. Identities = 114/446 (25%), Positives = 197/446 (44%), Gaps = 27/446 (6%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +L + + + D +G + F N Q L + + G+ +TE++ L I Sbjct: 23 EYILNVIPEPIALVDNEGYVVFFNKQYQEFLNISDEEAIGKHVTEIIE-NTRLHVVISTE 81 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTSQL----- 317 P E + + +A++ P+ G + V++++ L Sbjct: 82 KP----EIDYLQNIKGREAIVQRIPVFMDGKLLGAIGKISFRDVDEVKSLAKKLQVAENK 137 Query: 318 ---------GKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 ++ FA + + + A ++ VL+ GE GVGK L + AI Sbjct: 138 AKKFENELRYTATYDFADILGVSQSITAVKRLAHKVAATNTNVLIQGETGVGKELFAHAI 197 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEK 424 HN S GP++++NC L E G T G++ + ELA GGT+FL++ Sbjct: 198 HNNSNSCNGPFVSINCAAIPQDLLESELFGYDEGAFTGARKNGKIGKFELADGGTIFLDE 257 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I + + +QS LL+V++ R+ +DV+VIA T ++ V N F L+Y Sbjct: 258 IGDMPLGMQSKLLRVLQDRQFERVGGLTRQKVDVRVIAATNVNIEDKVRNNEFRADLFYR 317 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELY 544 L+ + IPPLR R I +V+ L++L + A+ L WPGN EL Sbjct: 318 LNTISLIIPPLRERYEDISLIVDKSLKNLNSSEYGNKRFSSQAMQTLTMYDWPGNIRELL 377 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 +V+E L D+ + + + + L + +++ + + EK+AIINA + Sbjct: 378 NVVERLFFLVDSDLVEENHVKQAL-SGINSEERKSNTNALEDQIHLTEKDAIINALESCN 436 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G + + LLGI RTTL++KMK+ + Sbjct: 437 GNKAQAAKLLGIHRTTLYQKMKKLNM 462 >UniRef50_B8FUV2 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8FUV2_DESHD Length = 699 Score = 539 bits (1390), Expect = e-151, Method: Composition-based stats. Identities = 137/641 (21%), Positives = 237/641 (36%), Gaps = 31/641 (4%) Query: 13 SPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAALEDAWEY--MAP 70 I W KL R + H + R + ++ Q + Sbjct: 66 RAEIKKVWIESYKLGLRPSDKT-HDPEEDML-----RNENLMPFAQIVFPTIHDLGDFNK 119 Query: 71 RECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLAAISGQAVKT 130 + I D + + G + L S Sbjct: 120 IPIFMNIHDRQGTFFFQKTESGIESYFVQEFLFSNEPREIRKSGLTSHLLCKRSMCPAVL 179 Query: 131 MADQHFKQVLWNWAFCATPLFDSKGRLTGTIALAC-----PVEQTTAADLPLTLAIAREV 185 + +H+ + N + P+FD G L I LA P E+ TA + L + Sbjct: 180 LGPEHYLESDLNINSASAPIFDVSGNLDAIITLAYRETGIPWEKDTAEKVSTILTQVLLL 239 Query: 186 GNLLLTDSLLAETNRHLNQLNALL--ESMDDG-VISWDEQGNLQFINAQAARVLRLDATA 242 + + T + + ++D +I D G + IN R T Sbjct: 240 AHRIQTSIRPPAERDIPVGREEIPCPDLINDPPIIVVDPAGTIIGINPAGRRFFPTLPTD 299 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL 302 Q I L + L I+ E + + ++P + ILL Sbjct: 300 GQAGNIRRYLPANSKLLPLIQTQAQTIITEVICSPPATGL-YSVQIRPFEAAGRSCSILL 358 Query: 303 LHPVEQM-RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 ++ + + + F + + R I A S+ +LL GE G GK Sbjct: 359 FSNAKESGQATAPGKCSPAADCFNSLIGESHAFRNAIDQAVCFANSNGNILLTGESGTGK 418 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD-NENGRLSRLELAHG 417 L ++AIHN + GP++A+NC ++ E G T + GR ++E+A G Sbjct: 419 ELFAKAIHNCQD-KKGPFVAINCAAIPRELISSELFGYASGSFTGGDRKGRKGKIEMADG 477 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + ELQ+ LL+V++ +TR+ I+ +I T +L L+E +F Sbjct: 478 GTLFLDEIGDMPYELQAVLLRVLQDKQVTRIGDHVSHQIEFNLITATNRNLKDLMESGQF 537 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 L+Y + F I IPPLR R+G I LV+ + S + L I ++AL L WP Sbjct: 538 RPDLFYRISMFPINIPPLRDRKGDIKLLVSYFMNSCGQNNPESLSISNEALQILEEYDWP 597 Query: 538 GNDFELYSVIENLALSSDNG---RIRVSDLPEHLFTEQATDDVSATRLSTSL-----SFA 589 GN +L +VI + + + + +P + T + Sbjct: 598 GNVRQLENVILYMMTIAKSRNCKVLLPEHIPNIVIQSSPPSLAPGEAPDTEKADAYGTIH 657 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 VEK + + I ++ +LG+ ++T++RK+K++ + Sbjct: 658 HVEKVMLEKMLKEFNHDIPLVAEILGVSKSTVYRKIKRYNL 698 >UniRef50_C3AI49 Sigma54 specific transcriptional regulator, Fis n=5 Tax=Bacillus RepID=C3AI49_BACMY Length = 465 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 113/454 (24%), Positives = 212/454 (46%), Gaps = 27/454 (5%) Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVL-QQAIK 263 L+ LL S+++ + + +G + + N A ++ + GR + E ++ + ++ Sbjct: 12 LHTLLSSVEEAISIVNTKGIMLYWNEAAEKMYDIKKEKIIGRNVQEFFLKEDIMNLKVLE 71 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPV--------------E 307 P++ + +I+ PI + + + E Sbjct: 72 NQQPVRD---IYHLPRPDKHVLISTTPIYNENNELIGSMSVEKDITATIKLNEKLTSTSE 128 Query: 308 QMRQLMTSQLGKVSH-TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 +++QL + F+++ ++ + +IH ++ A++ +L+ GE GVGK L +Q Sbjct: 129 ELQQLKQQMIQNNRDDPFSNIKGNNLAIQHIIHDMKKVAKTDATILITGESGVGKELFAQ 188 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFL 422 AIH S R+ +I +NC +A E G + T + G+ ++ELA GGTLFL Sbjct: 189 AIHEASLRSKKAFIPINCGAIPNALFESELFGYESGAYTGAAKGGKPGKIELADGGTLFL 248 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 +++ L +++Q LL+ +++ I R+ + IDV++IA T L +V F L+ Sbjct: 249 DEVGELPLDMQVKLLRALQEKEIYRIGGQTPKKIDVRIIAATNRILEDMVLNGTFRSDLF 308 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDF 541 Y L+ F IPPLR R I L ++ + +++ +A RL + +WPGN Sbjct: 309 YRLNVFTACIPPLRERTDDISYLAHHFFKEFSFKYNKPTPFVHQEATKRLHAYSWPGNIR 368 Query: 542 ELYSVIENLALSSDNGRIRVSDLPEHLFTEQA-TDDVSATRLSTSLSFAEVEKEAIINAA 600 EL + IE L + + I SD+ + L ++ ++ VS T LS + +EK I+ Sbjct: 369 ELRNFIERLIVLHEGSEIYESDILKLLPQAKSFSEPVSQTTLSLTDERESLEKTRILQTL 428 Query: 601 QVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 Q T G + LG+ R L++K+K++ I + Sbjct: 429 QQTYGNKSITAKKLGMSRANLYKKIKKYRITFDK 462 >UniRef50_A9VII1 PAS modulated sigma54 specific transcriptional regulator, Fis family n=16 Tax=Bacillales RepID=A9VII1_BACWK Length = 553 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 123/520 (23%), Positives = 213/520 (40%), Gaps = 42/520 (8%) Query: 145 FCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE----VGNLLLTDSLLAETNR 200 +++ + +E + + + E V + L N Sbjct: 43 CSCAVIYEED-------SFTTLIEAFSNHSAVVIVNGNLEPICCVTAQQMIPFLYNSYND 95 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 L N ++++ D V DE+ ++ A ++ + G+ IT + Sbjct: 96 LLAFYNTVIQTTDSSVTVIDEKECVRTWTDGAEKIFSVKHNEIIGQPITRFFDYKD--LE 153 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTS---- 315 ++ H K + A F + +I P+ + ++ V L Sbjct: 154 ILQSLHDGKSIIAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVALNEKLFNM 213 Query: 316 ------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + S F M P +R I R+ VL+ GE GVGK + Sbjct: 214 SHEMHRLEQEVAKYKDTSDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGESGVGKEV 273 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGT 419 ++AIH SE A P+I++NC +A E G + + G+ ++ELA GGT Sbjct: 274 FAKAIHEASETANAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKIELAQGGT 333 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 LFL++I + +++Q LL+V+++ R+ + I ID ++IA T DL + + F Sbjct: 334 LFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEMRKGTFRE 393 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPG 538 LYY L+ + IPPLR RR I L L ++ ++ + + L+ WPG Sbjct: 394 DLYYRLNVVSLHIPPLRERREDIIELTYTFLNDFSINYNRPIRDLPSSIMHELLHYNWPG 453 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLP----EHLFTEQATD---DVSATRLSTSLSFAEV 591 N EL +V+E L + + +G I+ LP + L E + + T LS E Sbjct: 454 NIRELRNVVERLVVFATDGIIKQEYLPFHTNDTLENETSHSLLLSNNNTILSLQEEMDEH 513 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 EK+ I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 514 EKKIIERALRILDGNKLECAKQLGVTRATLYNRLKRLGLQ 553 >UniRef50_C8X5E7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5E7_DESRD Length = 450 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 122/444 (27%), Positives = 210/444 (47%), Gaps = 17/444 (3%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL-----TLPAVL 258 N +L+S+++GV + D LQ +NA A ++ ++GR +L + Sbjct: 9 HHNIVLDSINEGVFTVDLNWTLQGLNAAAEKITGRTREWARGRKCFDLFQSRLCGEDCPI 68 Query: 259 QQAIKQAHPLKHVEATFESQHQF-IDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTS 315 +Q + P+ + + + + I+ + + +G + + ++ +L Sbjct: 69 RQTLTTGEPVVNRRTYILNAKEECVPVRISTAVLHDAEGRTIGGVETFQDLSEVEKLCRE 128 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 K +TF + P + + A+S VL+ GE G GK L ++ +HN S R Sbjct: 129 --LKSHYTFDDIVGRSPAMQHIFETLPLVAKSDSTVLIEGESGTGKELFARTLHNRSRRC 186 Query: 376 AGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 G ++ VNC D L EF G + TD + R R ELAH G++FL++I ++ L Sbjct: 187 RGQFVPVNCAALPDTLLESEFFGYEPGAFTDAKRSRSGRFELAHCGSIFLDEIGDISQAL 246 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V+++ + L + + IDV+VI T +L LVEQ F R LYY + ++ I Sbjct: 247 QVRLLRVLQERSVEPLGSEKSRNIDVRVIVATNQNLKNLVEQGLFRRDLYYRIRVIKLRI 306 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR RR IP L+++ + + + + D + RL +PGN EL +++E Sbjct: 307 PPLRERRDDIPLLIDHFINKFNQLQDKDIAGVTDSVMNRLTEYDYPGNVRELENIVERAF 366 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + I + LP L Q+ + + + L+ E+E+ I A Q+ G + + Sbjct: 367 VFCQGALIEMRHLPSELRDTQSRNLLGDKQ---GLTLKEMERALITRALQINKGHRKNSA 423 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQF 635 LGI +TL+RKMK ID+ + Sbjct: 424 RTLGINPSTLYRKMKALEIDSFAY 447 >UniRef50_C0GH67 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GH67_9FIRM Length = 569 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 122/483 (25%), Positives = 212/483 (43%), Gaps = 30/483 (6%) Query: 171 TAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINA 230 + + ++L L E + ++L A+L S+ + + D G +++ N Sbjct: 90 HQGTAVMEALAGNLLMSILQAKEELLEVKKLKSELWAILNSVQEAIEVADNSGLIKYTNP 149 Query: 231 QAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 RV + G+ I E A L QA+ + P+ + ++ + P Sbjct: 150 AFTRVTGIPEAQRVGKNIFEASPHGA-LAQALVKQKPVVGYRSKV--GGSGVEVISNAAP 206 Query: 291 I-IETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQ 333 I +E + +++ P+ + +LM Q+ +TF + Sbjct: 207 ILVEGEVEGAVVVFQPITDILKLMDELQKSTTIIENLYAKIDQITGSKYTFDDLTGSSKV 266 Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 I ++AA+S PVLL GE G GK L + AIH S+R P+I + C + L Sbjct: 267 FAATIDMAKKAAKSDSPVLLTGESGTGKELYAHAIHQASQRRGKPFIKIGCASVPEELLE 326 Query: 394 EEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 E G + T +L ++ELA+GGTLFL++I + LQ L+++++ R+ Sbjct: 327 SELFGHEKGAFTGAVKTKLGKVELANGGTLFLDEIGEMNPYLQGKLMRLLQDQEFERVGG 386 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL 510 I DV+VI T DL LV + RF +LY+ L+ E+ +PPLR RR IP LV + + Sbjct: 387 SETIRSDVRVITATNIDLKSLVRKGRFREELYFLLNVIELNLPPLRQRREDIPVLVEHFI 446 Query: 511 RSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLF 569 L ++ +++ + DAL L WPGN EL +VIE +S + I ++ Sbjct: 447 GKLNRKLGKKVRGVAPDALQLLSGYDWPGNIRELENVIERAMVSVETEVIGRQHFSPYIG 506 Query: 570 TEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMK 626 + T + + ++E+ + A G ++ + L I TL+ K+K Sbjct: 507 QFTNAETTQCTEI---VPLDKMEQMMLKAALARYGESLEGKKKAAQALNISLATLYNKLK 563 Query: 627 QHG 629 ++ Sbjct: 564 KYK 566 >UniRef50_A5D2Z2 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2Z2_PELTS Length = 562 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 114/479 (23%), Positives = 205/479 (42%), Gaps = 26/479 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 ++ + L E + +L S D + D +G + IN + Sbjct: 81 DITGWEFYWNELNELKEQVKELEDTFNSSFDEIYVIDGKGITKRINKAGETNYGVPVENL 140 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G+ + +L + K + + T PI + G +++ Sbjct: 141 LGKNVADLEREGYYNPSVSRMVFREKKRITITQKTKSGKHLIATGNPIFDENGEIIRVVV 200 Query: 304 --HPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAA 345 + ++ L +L + + PQ +++I + A Sbjct: 201 NSRDISELLNLRKQLEDTEQLVESYRQQLLKLSQERIRSDELIARSPQMKKVIEMVDKVA 260 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RT 402 + VL+ GE GVGK +++ +H S RA GP+I +NC + L E G + T Sbjct: 261 QVDSTVLIMGESGVGKGVIASRLHRLSRRAKGPFITINCGAIPEHLLESELFGYEGGAFT 320 Query: 403 DNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 G+ LELA+GGT+FL++I L + LQ LLQVI+ + R+ + I +D++ + Sbjct: 321 GARKEGKKGLLELANGGTVFLDEITELPLSLQVKLLQVIQDKKLIRVGGSKYISVDIRFV 380 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T D+ +V + F LYY L+ + IPPLR R+ IP L+ L L ++ Sbjct: 381 AATNKDIQRMVAEGLFREDLYYRLNVIPVIIPPLRYRQEDIPVLLEYFLEKLNTKYEKNK 440 Query: 522 KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 K +A+ L + WPGN EL +++E L ++ + I VS LPE++F ++ Sbjct: 441 KFTPEAIEILRNYNWPGNVRELENLVERLLVTKEGNEITVSHLPEYIFEGKSRFPNRIYV 500 Query: 582 L---STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 L + E+EK+ A +++ L I ++T+ RK++++ + + +R Sbjct: 501 LDICPLKEAVEEMEKQLFSMAYNRLK-NTYKVADALAINQSTVVRKIQKYNLLSRAERR 558 >UniRef50_A1HNH8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridiales RepID=A1HNH8_9FIRM Length = 637 Score = 537 bits (1385), Expect = e-151, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 216/470 (45%), Gaps = 24/470 (5%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AI + + + Q +L+ +G+I+ D G + +NA A ++ L Sbjct: 172 EAIYHALREAKRVARVRRQEQERSEQFRTILDYSTEGIITVDAAGAINLVNAAAMKITGL 231 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGT 297 + G A+ +LL L + + T Q + PII Q Sbjct: 232 SGE-AVGLAVDKLLPQ-LGLSRVLASGRAELGEVETVNGQ----QVAVNRVPIIIRGQAV 285 Query: 298 SFILLLHPVE-------QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 + PV ++RQ + + TF + D P R+ I R+ ++ + Sbjct: 286 GAVATFQPVADIQALEGKIRQKIYKRGLVARLTFDDILGDSPAIRQTIAIAREFSKVNSN 345 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-EN 406 VL+ GE G GK + +Q+IHN S R GP++AVNC + L E G T Sbjct: 346 VLITGETGTGKEIFAQSIHNASSRRKGPFVAVNCAALPENLLESELFGYAEGAFTGAARG 405 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G++ ELAHGGT+FL++I ++ +LQ LL+V+++ I RL R+IP+DV++IA T Sbjct: 406 GKMGLFELAHGGTIFLDEISEISPKLQGRLLRVLQEREIMRLGDDRVIPVDVRIIAATNR 465 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDD 525 DL +++ F + LYY + ++ +PPLR R+ I L+ + L+ R + +K I Sbjct: 466 DLYQMMQAGLFRQDLYYRVDVLKLVLPPLRERQEDIIPLMQHFLKLYCLRSNRPVKEIGP 525 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 DA A L WPGN EL ++ E LA+ + I D+ L E + Sbjct: 526 DAQAMLRRYHWPGNVRELRNIAERLAVLASGPVIGARDIAAVLTGETGRRKAINETAEPA 585 Query: 586 LSFA-----EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + A ++ + ++ A + +A LGI RTTLWR++KQ+ + Sbjct: 586 AALAGANDVDLNRAILLKALEEADYHYGRAAARLGISRTTLWRRLKQYQV 635 >UniRef50_C9S255 Proprionate catabolism activator, Fis family n=2 Tax=Geobacillus RepID=C9S255_GEOSY Length = 639 Score = 536 bits (1383), Expect = e-151, Method: Composition-based stats. Identities = 123/462 (26%), Positives = 212/462 (45%), Gaps = 15/462 (3%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + + ++ A++ ++ +G++ D G L IN A ++L + A Sbjct: 171 ALETAVELADQRRSEIEKRQKIQAMMRAVHEGILYVDTNGLLMEINPVAEKLLGVSAQDV 230 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G++I ++ L K+ PL +V + Q + V + + + + + + Sbjct: 231 IGKSIDKVAP-EIKLDDVFKRGKPLLNV---AQKTKQGMLLVNRIPVVHQGELIGAVATI 286 Query: 304 HPVEQ-------MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + +R + S+ TF H+ + +LI + A++ +L+ GE Sbjct: 287 QDAQAVQKAEKAIRHRVYSKGLLAKATFEHIIGKNSTFMKLIDKAQHYAQTDATILIRGE 346 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRL 412 G GK L +Q+IHN S R P++AVNC ++ L E G + T + G+ Sbjct: 347 TGTGKELFAQSIHNASNRNRHPFVAVNCAALPESILESELFGYEEGAFTGARKGGKQGLF 406 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELAH GT+FL++I +++ LQS LL+V+++ + RL + +IPIDV++IA T DL +V Sbjct: 407 ELAHRGTIFLDEIGEMSLPLQSRLLRVLQEKEVMRLGSDMVIPIDVRIIAATNRDLKSMV 466 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLV 532 + F + LYY L+ I +PPLR R +P L L++ + K+ L L Sbjct: 467 KDGLFRQDLYYRLNVLSIELPPLRERLDDLPDLFRFFLKNYKLDKQLIEKVLSIMLPVLC 526 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL ++ E +++ L E + + E Sbjct: 527 HHNWPGNIRELENIAERVSVLLKAHVTMDEVLAEVKKELFGSHIEILDSTDLTKEVENWE 586 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 ++ I+ + G + +ALLGI RTTLWRK+K +GID Sbjct: 587 RQRILQVLREVRGSKTKAAALLGISRTTLWRKIKDYGIDRYD 628 >UniRef50_A0Q207 Transcriptional regulator n=3 Tax=Clostridium RepID=A0Q207_CLONN Length = 520 Score = 536 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 115/495 (23%), Positives = 227/495 (45%), Gaps = 16/495 (3%) Query: 150 LFDSKGRLTGT----IALACPVEQTTAADLPLTLAIAREVGNLLLTDSL-LAETNRHLNQ 204 ++D + + +E + + L EV +++ + L E ++ + Sbjct: 25 IYDLNINIVSIEVFPKTVFIKIEDIYSHNKDLIKKKLYEVSGIIMVCEINLLEYEKNERK 84 Query: 205 LNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ 264 L A+++++DDGVI ++ N++ N+ ++ + + I +L P ++ IK Sbjct: 85 LLAIIDAVDDGVIYVNKNLNIEIFNSYCEKIFNCNKDDIIDKDIRTVLEDPLII-DLIKS 143 Query: 265 AHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVSH 322 K+VE S+ I + T + + G + + ++++ +L + Sbjct: 144 GKDYKNVEIKINSKKGDIQYLTTGIAVKDDSGESIGVVSSITDIKKVIELASVVSKMDKE 203 Query: 323 TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAV 382 F ++ + + + + + ++S+ V+L GE G GK L ++AI S R ++ + Sbjct: 204 AFGNIIGNSQAIKGVKNIVKTVSKSNSTVILRGESGTGKELFARAIQRLSNRKDKRFVIL 263 Query: 383 NCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQ 438 NC + + E G T N G+ + A+ GT+FL++I L++ LQ+ LL+ Sbjct: 264 NCAALPENLIESELFGYVKGSFTGANNNGKEGLFKEANEGTIFLDEIGELSMVLQAKLLR 323 Query: 439 VIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMR 498 V++ GV+ ++ + +DV++IA T +L +V++ F LYY L+ I IP LR R Sbjct: 324 VLQDGVVRKIGSCTEEKVDVRIIAATNRNLEEMVKKGEFREDLYYRLNVIPIFIPSLRER 383 Query: 499 RGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNG 557 IP +V ++ L + S ++ + D + L+ WPGN EL +V+E D Sbjct: 384 MEDIPDMVTFFIKKLNHKLSKKILGVKYDFIKELMKYNWPGNIRELQNVVERAMNLCDGK 443 Query: 558 RIRVSDL--PEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 + L ++ + A+ L EKEAII A + ++ + +LG Sbjct: 444 LLTKKHLMINSYINPISLDEVKEASDLKLKDIVEACEKEAIIKALKKNK-TFRKTAKVLG 502 Query: 616 IGRTTLWRKMKQHGI 630 + TT+ K+K++ I Sbjct: 503 VSHTTIINKIKKYNI 517 >UniRef50_C0QEM3 Sigma-54 dependent transcriptional regulator (PAS domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QEM3_DESAH Length = 575 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 126/509 (24%), Positives = 214/509 (42%), Gaps = 40/509 (7%) Query: 141 WNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNR 200 PL D +GR+ G + + L+ + Sbjct: 90 HRVTRVGAPLLDDQGRVQGCVTVLQDHSPFN---------------------ELVNRIHY 128 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP----- 255 L +L+S++ G+ + + G + F N A +V G+A L Sbjct: 129 EEQSLKIILDSLNMGIFTVNRGGLITFFNRAAEKVSGFSRMNLLGKACGTLFAGEGKQVC 188 Query: 256 AVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQL 312 L+Q + P V S Q + I P++ G + + ++QL Sbjct: 189 QALKQVLADRIPATAVRGELLSFQGEVIPISGDYIPLLNDHGGVIGALAAFQDMTLVQQL 248 Query: 313 MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNES 372 + G+ + F HM DP +R+ R A++ +L+ G G GK LL++ IH+ES Sbjct: 249 NQAIKGQ--YHFHHMIGKDPAMQRIFDMVRVVAKTESTLLIEGATGTGKDLLAKIIHSES 306 Query: 373 ERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKIEYLA 429 R+ P++ VNC D + E G T + + R AH GT+FL++I L Sbjct: 307 NRSKRPFVKVNCAAIPDNLVESEIFGYVRGAFTGADRDKPGRFSEAHSGTIFLDEIGDLP 366 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + LQ+ LL+V++ L +R+ +DV++++ T L LV Q F L+Y L+ Sbjct: 367 LALQAKLLRVLEDREFYPLGSRKTQRVDVRILSATNRKLESLVAQKLFREDLFYRLNVLR 426 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIE 548 I +PPL RRG +P L+ + +R I + A+ L++ +PGN EL ++IE Sbjct: 427 IDLPPLMNRRGDLPLLIRHLMRKQAGIMKKPFPDICETAMEILLNYHYPGNIRELENIIE 486 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQATDD-----VSATRLSTSLSFAEVEKEAIINAAQVT 603 + + IR LP ++ + + + S E++ I++ + Sbjct: 487 HAIILCQEEVIRSCHLPAYILDCSGLEGKRDGFSDPSTVDPGFSGTAQERQQILDVLRAN 546 Query: 604 GGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 Q + LLG+ RTTLWRKM++ I Sbjct: 547 RWHRQTTANLLGMDRTTLWRKMRKFKISP 575 Score = 55.0 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 8/133 (6%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L+ + GVI D ++ N A +LRL G E+ Sbjct: 12 ILDHFNIGVILVDNHRRIRQCNTSARNLLRLSEDEIIGGDCQEIFCGLPCFPTCPFHDPE 71 Query: 268 LKHVE----ATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTSQLGKVS 321 V + + P+++ QG + +L +L+ + Sbjct: 72 TSDVRDMDVEFLDEAGEKHRVTRVGAPLLDDQGRVQGCVTVLQDHSPFNELVNRIHYEEQ 131 Query: 322 HTFAHMPQDDPQT 334 + D Sbjct: 132 SL--KIILDSLNM 142 >UniRef50_A1HLP6 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A1HLP6_9FIRM Length = 635 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 129/462 (27%), Positives = 204/462 (44%), Gaps = 20/462 (4%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AI + + + + ++ S DG+I+ D+ + N A +V + Sbjct: 170 EAIVQAIHDAENIAEVRISERERAELFRIIVNSSHDGIIAIDDAERITLFNPVAEKVFGI 229 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 A A+ G I + + L + ++Q + + + + + Sbjct: 230 PAAAAVGAKIRDKIP-NTNLPRILRQGGSEDG---ELQYVGEKVIVTQRFAIKVNGRVVG 285 Query: 299 FILLLHPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 + V ++ RQ + ++ A + + + LI R+ A V Sbjct: 286 AVANFRDVTELQRLERLVRQKLHAKGLVARIRLADIIGESAALKGLIERARKFAAVDATV 345 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG- 407 L+ GE G GK +L+Q IHN S RA GP++AVNC + L E G T + G Sbjct: 346 LIVGETGTGKEMLAQGIHNASHRANGPFVAVNCAALPENLLESELFGYAEGAFTGAKKGG 405 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + ELAHGGT+FL++I + + LQS LL+V+++ + R+ R+IP+DV++IA + + Sbjct: 406 KPGLFELAHGGTIFLDEISEMPLPLQSRLLRVLQEREVLRIGGDRIIPVDVRIIAASNRN 465 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 L LVE+ F LYY LH +T PPLR R+ IP LV LR ID A Sbjct: 466 LRNLVEKGLFRDDLYYRLHLLTLTAPPLRERKEDIPLLVRAFLRKHSHLNPLVSDIDSLA 525 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIR---VSDLPEHLFTEQATDDVSATRLST 584 + L WPGN EL + I+ L + S+ I VS L E L Q + + Sbjct: 526 VQLLAEYEWPGNVRELENAIQRLIILSEEQIIGKAAVSALLEELQGGQTLPFRGKQQAAP 585 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 S A++E + I + LGI R+TLWRK++ Sbjct: 586 --SLADLEAQYIAAVLAEENNNKSRAAKRLGIDRSTLWRKLR 625 >UniRef50_A0LPB0 Sigma54 specific transcriptional regulator, Fis family n=20 Tax=Deltaproteobacteria RepID=A0LPB0_SYNFM Length = 519 Score = 535 bits (1378), Expect = e-150, Method: Composition-based stats. Identities = 126/446 (28%), Positives = 201/446 (45%), Gaps = 19/446 (4%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP-----AVL 258 Q +L+S+ DGV + D + N A + + A+ + GR E+ VL Sbjct: 79 QTETILDSIADGVFTVDLDWRITSFNRAAEEITGVSASDAIGRPCCEVFRANVCESTCVL 138 Query: 259 QQAIKQAHPLKHVEATF-ESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTS 315 + ++ P+ + + + I ++ + G + + + L Sbjct: 139 KFTMETRKPIVNKSVAILRADGREIPISVSTALLKNASGHTIGGVETFRDLSLVETLRKE 198 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 + + F + P L + ARS VL+ GE G GK LLS+A+H+ S RA Sbjct: 199 IDRQ--YRFQDIVSKSPAMLELFAILPEVARSESTVLIQGESGTGKELLSRAVHSLSSRA 256 Query: 376 AGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTLFLEKIEYLAVEL 432 AGP++A+NC D L E G TD R R A GGTLFL++I ++ L Sbjct: 257 AGPFVAINCGALPDTLLESELFGHVAGAFTDARKNRAGRFAQAEGGTLFLDEIGDVSPAL 316 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V+++ L + R + +V+++A + DLA LV + F + LYY ++ ++ + Sbjct: 317 QVRLLRVLEERTYEPLGSSRTVTANVRIVAASNRDLAQLVAEGSFRKDLYYRINVVKLEL 376 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 P L R+ IP L + + L K + + + +ALA + WPGN EL +VIE Sbjct: 377 PTLARRKEDIPLLAEHFIARLNKLRNKNILGLSHEALAVFMRHNWPGNIRELENVIEYAF 436 Query: 552 LSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMS 611 + G I+ + LPE+L S LS + E AI +A R + Sbjct: 437 ILCRGGLIQPAFLPEYLHAHACVLPDSG-----GLSLRDNEARAIRDALDRNQWRRMATA 491 Query: 612 ALLGIGRTTLWRKMKQHGIDAGQFKR 637 LGI + TL RKMK+ I A +R Sbjct: 492 RELGIDKNTLRRKMKRLNIRADDPRR 517 >UniRef50_B6FY43 Putative uncharacterized protein n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6FY43_9CLOT Length = 590 Score = 534 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 113/504 (22%), Positives = 223/504 (44%), Gaps = 49/504 (9%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ D G++TG + + D L + + L + Sbjct: 115 PVVDDNGKITGIL--------RQEH----------------IRDYLYMQLEEYGITLKYI 150 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 + + +G+ + + +G + N+ + + GR I++ L + ++ +++ + Sbjct: 151 IGHIREGICAVNNEGVVILWNSFMEERYGIKSDDIVGRPISDFLE-DTICERVLRRRIGI 209 Query: 269 KHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQL---MTSQLGKVSH-- 322 V +T+ + Q + ++ PI + + V + R L + K+ + Sbjct: 210 SDVYSTY--KKQDMYGLVHANPIFFGGEFVGVVCTELDVTEARNLSFELEKTNEKLKYLQ 267 Query: 323 ---------TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESE 373 F + + + +Q A++S + + GE G GK + S+AIH +S Sbjct: 268 DEVKNLSNGVFEGILGKSDKIEKAKAIAKQIAKTSSSIFIWGESGTGKEVFSRAIHEQSG 327 Query: 374 RAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLA 429 R G ++ VNC EF G + T + G+ ELA GT+FL++I L Sbjct: 328 RK-GSFVPVNCSAIPAELFESEFFGYESGAFTGANKKGKSGIFELAKDGTVFLDEIADLP 386 Query: 430 VELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFE 489 + +Q+ LL+V+++ + R+ + I I+ ++I+ T DL +V++ +F LYY L+ E Sbjct: 387 LNMQAKLLRVLQEKEVRRVGGEKTIKINPRIISATNKDLEKMVKEEKFREDLYYRLNVVE 446 Query: 490 ITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIE 548 I IPPLR R+ I L++ L + + + + +A L + W GN EL + +E Sbjct: 447 IKIPPLRERKEDIGILLHYFLDEMCRENGKPRMSLSKEAYKILENYRWKGNIRELKNTVE 506 Query: 549 NLALSSDNGRIRVSDLPEHLFTEQA-TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRI 607 N+ + SD+ I +P ++ + D L + + ++E + I A +++ G Sbjct: 507 NMVVLSDSSIIEKDAIPSYIVESAKNSTDDEDYPLDLTSAIEKLEIKNITKALEMSKGNK 566 Query: 608 QEMSALLGIGRTTLWRKMKQHGID 631 + + +L I RTTL+ K+ +GI Sbjct: 567 AKAAKILNIPRTTLYYKLDLYGIK 590 >UniRef50_B0K647 Sigma54 specific transcriptional regulator, Fis family n=12 Tax=Firmicutes RepID=B0K647_THEPX Length = 544 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 115/459 (25%), Positives = 195/459 (42%), Gaps = 17/459 (3%) Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 E+G + + S+ G+I DE G + N A + ++ Sbjct: 89 NELGKEKEEKTTYELLKNTSIAYEKIFNSIGSGLIVTDENGAIMIFNKAAESITGINMDQ 148 Query: 243 SQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFIL 301 + G+ I E+ + +K + + + + + PI + ++ Sbjct: 149 AIGKKIQEV-MSDIKIADVLKTGKEEMNKKLKIGTNV----VLTNITPIYTGTKIEGAVI 203 Query: 302 LLHPVEQMRQLMTSQLGKVSH--TFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 + + Q+ L F + + + + + +AA + VL+ GE G Sbjct: 204 VFYDFPQIEYLENELKRDRKLDKAFDIIIGNSGKLKDALTIASKAAETDSTVLIRGESGT 263 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAH 416 GK L++ AIH S+R P+I VNC L E G + T ++ + ELA Sbjct: 264 GKELVANAIHYASKRKDKPFIRVNCAAIPVTLLESELFGHERGAFTGAVTQKIGKFELAD 323 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GGT+FL++I + E+Q LL+VI++ R+ + I +DV++IA T DL +++ Sbjct: 324 GGTIFLDEIGDIPPEIQVKLLRVIQEKEFERVGGIKTIKVDVRIIAATNKDLEKAIKEGT 383 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLR-SLEKRFSTRLKIDDDALARLVSCA 535 F LYY L+ + +PPLR RRG IP LV + + +K K+ A+ L+ Sbjct: 384 FREDLYYRLNVIPVILPPLRERRGDIPLLVEHFIEKLNKKLNKNVKKVTKKAMQALIYYD 443 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSA----TRLSTSLSFAEV 591 WPGN EL ++IE SD I DLP+++ E T S L+ E Sbjct: 444 WPGNIRELENIIERCITLSDTDYIDYEDLPQYIRNETTTVSDDDIIYLGENSELLTMEEY 503 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E + I A Q + +LG+ T+ K ++ G+ Sbjct: 504 EYKIIKAAIQRYK-SFNKAGKVLGLTHKTIAAKARKFGL 541 >UniRef50_C5DAI7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Geobacillus RepID=C5DAI7_GEOSW Length = 569 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 110/486 (22%), Positives = 201/486 (41%), Gaps = 32/486 (6%) Query: 156 RLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDG 215 + G L +L + + ++ + + L Q+ ++E DG Sbjct: 79 NIAGRQCLVNRTPLYRNGELIGAIGVLEDISQ-------MEHYHTLLKQMETIIEFSTDG 131 Query: 216 VISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATF 275 + D+ G +N+ + G+ + +L+ Q K + Sbjct: 132 IYVVDQNGITTMVNSAYEAITGFRREELVGKHMYDLVKKGYFDQSVSLLVLQQKKRISIL 191 Query: 276 ESQHQFIDAVITLKPIIETQGTS--FILLLHPVEQMRQLMTS--------QLGKVSHTF- 324 + D ++T P+ QG + + + + Q+ ++ + +TF Sbjct: 192 QKIGGKKDVIVTGNPVFNEQGDIEMVVTSVRDISHLIQMKAELEKAKSFSEMSQHRYTFS 251 Query: 325 -----AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPY 379 + P ++L Q A VLL G GVGK +++ IH+ S R P+ Sbjct: 252 VDGSKEQIVFRSPSMKQLFDKVEQIAPYPTTVLLTGPSGVGKEVIANLIHHLSPRKNKPF 311 Query: 380 IAVNCELYGDAALAEEFIGGD---RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSA 435 I VNC + L E G + T G++ LELA GT+ L++I + + LQ Sbjct: 312 IKVNCGAIPEPLLESELFGYEKGAFTGARQDGKIGLLELADKGTIMLDEIGEMPLSLQVK 371 Query: 436 LLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPL 495 LL+V+++ + R+ + + +DV++IA T +L L+ Q +F LYY L E+ IPPL Sbjct: 372 LLRVLQEKQVQRIGSHKTKKLDVRIIAATNQNLKELISQGKFREDLYYRLQVIEMYIPPL 431 Query: 496 RMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSD 555 R I L+++ K + + L WPGN EL +++EN+ +S Sbjct: 432 AERPEDIEPLIDHYFSFYCKLYRINKHLSPKTKEILQRYHWPGNVRELKNLMENMVVSVP 491 Query: 556 NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLG 615 + I DLP H++ + A + + L+ + E+ I A + +++ + LG Sbjct: 492 SQLIEPHDLPLHIYDQTA----ATSPLTLKERVEQFERRLIYEAIEK-NTSLRKAAQQLG 546 Query: 616 IGRTTL 621 I +TL Sbjct: 547 IDHSTL 552 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 50/129 (38%), Gaps = 9/129 (6%) Query: 203 NQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAI 262 + + S+ +GVI D G + INA A ++L+++ +G+ I +L+ L + Sbjct: 9 HIWENIFFSIHNGVIVVDRNGKILLINASAKKLLQIENENWEGKDIRDLIPTTQ-LPHVL 67 Query: 263 KQAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQ---LMTSQLG 318 + V+ + ++ P+ + I +L + QM L+ Sbjct: 68 ENGTSSIGVKMNIAGR----QCLVNRTPLYRNGELIGAIGVLEDISQMEHYHTLLKQMET 123 Query: 319 KVSHTFAHM 327 + + + Sbjct: 124 IIEFSTDGI 132 >UniRef50_A6TL20 Sigma54 specific transcriptional regulator, Fis family n=4 Tax=Clostridiaceae RepID=A6TL20_ALKMQ Length = 587 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 115/545 (21%), Positives = 231/545 (42%), Gaps = 68/545 (12%) Query: 150 LFDSKGRLTGTI---ALACPVEQTTAADLPL----------TLAIAREVGNLLLTDSL-- 194 +++ + ++ G + + PV+ ++ L A+ + L Sbjct: 45 IYNDEEKVVGVLTFKDIMRPVKFERDLEIQLESHEVQEVLDISEGAKAIEARNLMRREKI 104 Query: 195 ------------------------LAETNRHLNQLNALLESMDDGVISWDEQGNLQFINA 230 ++ + L ++ ++ +GV D+ G + + Sbjct: 105 GRLPVTKNDEVIGIVRTKDILDKVYSKIDEMHEALGHIIHNLHEGVCVVDKDGIVMLWSD 164 Query: 231 QAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 A ++ R+ + G+ + A+L +K P+++V + S A+I+ P Sbjct: 165 TAEKLYRVKSKELLGKKLESFFP-TALLLTVLKSEKPIRNV---YHSPRDKSYAIISAVP 220 Query: 291 II-ETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQ 333 I + + + + + L ++ + ++F + Sbjct: 221 IYINGELVAAVSTDRDITETANLSVELETTKEKLDYLQMEVNKINENQYSFDKVLGKSQV 280 Query: 334 TRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALA 393 + I +Q A ++ VL+ GE G GK + ++AIH S R GP++A+NC + Sbjct: 281 IKEKIDKAKQVASTNSSVLIGGESGTGKEVFARAIHQVSGRK-GPFVAINCSAIPENLFE 339 Query: 394 EEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLD 449 E G + T G++ ++ELA GTLFL++I + + +Q+ LL+V+++ I R+ Sbjct: 340 SEIFGYEGGAFTGALNKGKIGKVELAENGTLFLDEIGDMPLYMQAKLLRVLQEKQIVRVG 399 Query: 450 ARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK 509 + + +DV++I+ T +L +V + +F L+Y L+ I +P L+ R I +N Sbjct: 400 GEKPVDVDVRIISATHRNLKTMVMEGKFREDLFYRLNVVNIQLPSLKYRVEDIHIFLNQF 459 Query: 510 LRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL 568 + K + + KI + L++ WPGN EL + +E+L + S NG I +S +PEH+ Sbjct: 460 MAEFCKENNLSIPKISMEVFHTLMNYDWPGNIRELKNTVEHLVVFSKNGEIIMSSIPEHI 519 Query: 569 FTEQATDD--VSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMK 626 + + + +E I A +V G + + LL I R+TL+ K+K Sbjct: 520 LEKIGDSQYVDTPENYDLQENIKHIETVTIRKAMEVVNGNKMQAAKLLNIPRSTLYYKIK 579 Query: 627 QHGID 631 + I Sbjct: 580 FYNIK 584 >UniRef50_B3E3G2 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfuromonadales RepID=B3E3G2_GEOLS Length = 557 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 124/520 (23%), Positives = 219/520 (42%), Gaps = 56/520 (10%) Query: 123 ISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIA 182 ++ + V + L + A+ L+D +G G + Sbjct: 81 VTNREVTIKNAE---DKLIPVSVSASILYDDEGNPIGGV--------------------- 116 Query: 183 REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATA 242 ET R + ++ A+++S+ DG+ + DE ++ N A + + A Sbjct: 117 --------------ETLRSMKRIYAIMDSVADGLFTVDEGMHITHFNKAAEEITGVSAQE 162 Query: 243 SQGRAITELLTLP-----AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT 297 + GR E+ + +AI ++ + + + ++ + + G Sbjct: 163 AIGRPCYEIFKSEACTGACPMVEAIATGQSIQREVEISDRKGRKKLISVSASTLYDAAGN 222 Query: 298 --SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCG 355 + + + + + + + ++F + +P RRL A S+ V L G Sbjct: 223 VMGGVETVRDLTPITAI--KEEIREKYSFRSLVSRNPAMRRLFDVMEDIAASNATVFLNG 280 Query: 356 EEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIG---GDRTDNENGRLSRL 412 E G GK L ++AIH+ S R GP + VNC + L E G G T R RL Sbjct: 281 ESGTGKELFARAIHDLSPRREGPMVIVNCGALPETLLESEIFGVRKGAFTGATENRPGRL 340 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 EL +GGT FL++I L + LQ LL+V++ L AR I DV+ I T +L +V Sbjct: 341 ELCNGGTFFLDEIGDLPLPLQVKLLRVLENHEFQPLGARSPIKADVRFITATHRNLEEMV 400 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARL 531 + F + LY+ ++ + IPPLR RR IP LV+ L+ ++ +++ + + L L Sbjct: 401 AEGTFRQDLYFRINIVTLNIPPLRDRREDIPLLVDMALQRFNLTYNKKVRSVSPEVLKLL 460 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEV 591 ++ ++PGN EL ++IE + I + LP + + + R + A+ Sbjct: 461 LTHSFPGNVRELLNLIEQSVILCRGTEITLDHLPTNFLGQSHEQAQNTRRSGKIPTAAD- 519 Query: 592 EKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + G E++ L I RTTLWR MK+ G+ Sbjct: 520 ----LNALLSRYSGNRAEVARELNIDRTTLWRWMKRLGVK 555 Score = 79.7 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 55/124 (44%), Gaps = 8/124 (6%) Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL-----TL 254 L + +++S+ DGV + D ++ N A + + + GR E+ Sbjct: 8 EQLKYFSHIMDSVADGVFTVDRDMHVIAFNRAAELMTGIKRADAVGRPCHEIFRTSVCDN 67 Query: 255 PAVLQQAIKQAHPLKHVEATFES-QHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQ 311 +++A+K+ P+ + E T ++ + + I ++ + + +G + L ++++ Sbjct: 68 GCPVREAMKKGKPVTNREVTIKNAEDKLIPVSVSASILYDDEGNPIGGVETLRSMKRIYA 127 Query: 312 LMTS 315 +M S Sbjct: 128 IMDS 131 >UniRef50_A6LJ55 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Thermotogaceae RepID=A6LJ55_THEM4 Length = 564 Score = 533 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 109/514 (21%), Positives = 221/514 (42%), Gaps = 21/514 (4%) Query: 137 KQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTA-ADLPLTLAIAREVGNLLLTDSLL 195 L P D + I + + T ++ +A+ R++ ++ + Sbjct: 55 NTRLHIVVQTGVPEVDEVQNVGENIIITSRMPLTDECGNILGAVAVFRDITSMRKLAEEI 114 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT-ELLTL 254 ++ +L A+++S D + DE G + +N ++ L G+ T ++ Sbjct: 115 TNLHQIEARLKAIIDSTYDAISVADENGYIVLVNKAYTKITGLKPEEVIGKPATVDIAEG 174 Query: 255 PAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLM 313 ++ + + P+ + + + ++ P I+ + + + ++H V ++ +L Sbjct: 175 ESIHMKVARTKKPIFNARLKVGPLKR--EVIVNAMPLIVRGKFSGSVAVVHDVSEILELT 232 Query: 314 TS--------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLS 365 + K +TF + + ++ A++ V L GE G GK L + Sbjct: 233 RELNEVKRYIRQLKAQYTFDDIIGKSEKLLIAKEQAKKVAKTPATVFLRGESGTGKELFA 292 Query: 366 QAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKI 425 AIHNES R P++ VNC + L E G T + G+ +E A GGTLFL++I Sbjct: 293 HAIHNESNRKNNPFVTVNCAAIPENMLEIELFGY--TKDTFGQKGLIEEAEGGTLFLDEI 350 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 + + +Q+ +L+ I+ + + R+ ++V++IA+T ++ L+ + +F LYY L Sbjct: 351 GKMPISVQAKILRFIENREFLPIGSNRVKKVNVRIIASTNMNIEELIRKEQFLIDLYYRL 410 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELY 544 + F I IPPLR R+ I L + + +++ + I D+A+ L WPGN EL Sbjct: 411 NVFPIYIPPLRERKEDIEELAKFLAKKIGRQYGRNVVDITDNAVEYLKKYDWPGNIRELE 470 Query: 545 SVIENLALSSD--NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 ++I ++ D + +P + S + E++ I ++ + Sbjct: 471 NIIGRAIINMDIGETILDKRHIPLLFLENNSILK---KEGSLRSMVEDFERKMIESSLKE 527 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 G + L I TL+ KM+++G+ + Sbjct: 528 NNGDRTLTAKKLKISLRTLYYKMERYGLLKKGER 561 Score = 73.1 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 200 RHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ 259 + +LES+ +GVI D+ + +IN +A +L+L G+ + +++ L Sbjct: 2 ELMKFYRTVLESIIEGVIIVDKDAKILYINKRAMHILKLK-EGFIGKHVADVIP-NTRLH 59 Query: 260 QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE--TQGTSFILLLHPVEQMRQLMTSQ- 316 ++ P + + P+ + + + + MR+L Sbjct: 60 IVVQTGVPEVDEVQNVGEN----IIITSRMPLTDECGNILGAVAVFRDITSMRKLAEEIT 115 Query: 317 -LGKVSHTFAHMP 328 L ++ + Sbjct: 116 NLHQIEARLKAII 128 >UniRef50_B1KVR7 Sigma-54 dependent transcriptional regulator n=11 Tax=Clostridium RepID=B1KVR7_CLOBM Length = 470 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 113/449 (25%), Positives = 203/449 (45%), Gaps = 8/449 (1%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 E ++ L +G+I DE N+ IN +L + +I +++ Sbjct: 17 ENGEKFLSISVLQTAFNVAYEGLILIDENYNILKINTMGLNILNSTEDKLKKYSIKDIIR 76 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQL 312 + ++ ++++F + I + + P+ + I+ + + +L Sbjct: 77 NYKFIDDCLQNGIHKLSIDSSFLINNNSIRCITNIMPVKLQDSIIGAIISIRDTRHIHKL 136 Query: 313 MTSQLG-KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + + +G K S+TF + + + + +I ++A+ S +L+ G G GK L +QAIHN Sbjct: 137 VNNVVGYKASYTFDDIITKNQKMKSIIELAKKASESDCSILIDGNSGTGKELFAQAIHNH 196 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEY 427 S R GP++AVNC + E G + T + G + ELA GGT+FL++I Sbjct: 197 SNRCHGPFVAVNCAAIPRELVESELFGYEKGAFTGASKGGYPGKFELADGGTIFLDEIGE 256 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 L +++QS LL+V+ I R+ ID++V+A T +L+ V F LYY L+ Sbjct: 257 LPLDIQSKLLRVLDNLKIMRVGGTHEKKIDIRVLAATNRNLSEEVSNKNFRGDLYYRLNV 316 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRF-STRLKIDDDALARLVSCAWPGNDFELYSV 546 + + PL+ R + AL N + L + KI + + +L + WPGN EL ++ Sbjct: 317 INVHLIPLKDRVEDVEALTNCFVDKLNIKNPGNFKKIAPEFMDKLKAYHWPGNVRELRNI 376 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 +E ++ I L L + + + +E +AI A G Sbjct: 377 VERSYYICEDNIITDKFLNNKLMKNEHHNCCIGKEEP-IVPLDILEHKAIEKALIHCKGN 435 Query: 607 IQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 I + S LLGI R T++RK+ ++ ID + Sbjct: 436 IVQASELLGISRATIYRKINKYNIDLNEI 464 >UniRef50_A4J4M1 Sigma54 specific transcriptional regulator, Fis family n=8 Tax=Firmicutes RepID=A4J4M1_DESRM Length = 470 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 119/469 (25%), Positives = 216/469 (46%), Gaps = 31/469 (6%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + + + L E + + L+E+ +G+I + QG + FIN +L L + + G+ Sbjct: 8 DHQIIEQELNENQVLASMWDVLIENPYEGMIVVNAQGYIIFINNTYLNILGLKKSDAIGK 67 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF------- 299 + ++ T + L Q I+ P+ + + ++ PII +G Sbjct: 68 HVWDV-TSHSQLPQVIETGRPILYDFWEVNGRK----LIVVRIPIINNEGNVIGAIGKSL 122 Query: 300 -------ILLLHPVEQMRQLMT------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 LL ++ + + + ++ K ++ ++ + + + R+ A Sbjct: 123 FTDIPSGKLLFTKLQVLEKELAFYKEEIRKVYKAKYSCKNLIGESESVKEIKKLARKVAS 182 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD 403 S+ +L+ GE G GK LL+QAIHN R P++ VNC + L E G T Sbjct: 183 SNSTILITGESGTGKELLAQAIHNAGCRNQRPFVRVNCAAVPENLLETELFGYDDGAFTG 242 Query: 404 NENGRLSR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G ELA GGT+FL++I + + +QS LL V+++ + R+ + +P+DV+VI+ Sbjct: 243 AKKGGKPGKFELAQGGTIFLDEIGEIPLTMQSKLLAVLQERELERVGGIKTVPLDVRVIS 302 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T +L +V+ F LYY L+ +P LR R IP LVN L K+ + ++ Sbjct: 303 ATNRNLEDMVKNGTFREDLYYRLNVINFRLPSLRERSEDIPLLVNYLTHKLNKKLNCHVE 362 Query: 523 -IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR 581 + A+ L WPGN +L + +E + +D+ + +P L + Sbjct: 363 GYTEQAMQLLTKYHWPGNVRQLENALERMFSFTDDKILSTEHMP-FLKKIVNVNSSEVNT 421 Query: 582 LSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 S + + AE EK+ I++A Q G + + LL I + L+RK+K++ I Sbjct: 422 KSLAETIAETEKKMILDALQKVDGNRNKAAKLLDIHLSVLYRKIKKYDI 470 >UniRef50_B2A8I7 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8I7_NATTJ Length = 601 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 116/503 (23%), Positives = 231/503 (45%), Gaps = 26/503 (5%) Query: 148 TPLFDSKGRLTGTIALACPVEQTTAADL-------PLTLAIAREVGNLLLTDSLLAETNR 200 +P+ + G++ I + E ++ + + + ++ E + Sbjct: 104 SPI-NLNGQVIAIIGITAFTESQKQDLTYAEEKYRSFIKKMSELLADSFSNEQIILEKTK 162 Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 Q++A++ S+ +G+++ D+ + N +L + G+ + ++ + Sbjct: 163 AYAQVSAIVNSVYEGILAVDDYNEVIACNDAVRDLLDI-RGDIIGQNVENVVP-ELPFEG 220 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQLGK 319 I E F I ++ +KPI + + + +++ +L G Sbjct: 221 VITTGTSKLGHEQYFSKVG--IHCLVNMKPIKMNNKVVGAVATVRDTKEIEKLAFRVSGN 278 Query: 320 -VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 +F + + + L ++ +++ VL+ GE G GK L ++AIH+ S R GP Sbjct: 279 TAGFSFNAIISKNNNIKELKEKAKKVSQTDSTVLIRGESGTGKELYARAIHSASPRWKGP 338 Query: 379 YIAVNCELYGDAALAEEFIGGDRTDN-----ENGRLSRLELAHGGTLFLEKIEYLAVELQ 433 ++ V+C + L E G + + + G++ + ELA GGT+FL++I + + LQ Sbjct: 339 FVPVHCGAIPETLLESELFGYE-SGAFTGAKKGGKIGKFELAEGGTIFLDEIGDMPIHLQ 397 Query: 434 SALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIP 493 + LL+V++ G R+ + I IDV+V+A T L +E+N+F R L+Y L+ + IP Sbjct: 398 TKLLRVMQDGTFERIGSPETIKIDVRVLAATHQPLEEFIEKNKFRRDLFYRLNVVPLFIP 457 Query: 494 PLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 LR RR I L+N+ L + + + + ++ L +WPGN EL +V E Sbjct: 458 ALRERREDISLLLNHFLNKYANKLKREQPALSRELMSFLEQYSWPGNVRELENVAEYFIN 517 Query: 553 SSDNGRIRVSDLPEHLFTE--QATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR---I 607 ++ G + + DLP+++ + + D L E+EK + A ++ G Sbjct: 518 INEKGYLDLGDLPKNMKDKLLETQDYQKNVGDDEILPLEELEKRSFEKAVKIYGISEQGK 577 Query: 608 QEMSALLGIGRTTLWRKMKQHGI 630 Q M+ LG+ R T++RK+K++G+ Sbjct: 578 QLMAGKLGVSRATVYRKLKKYGL 600 >UniRef50_A6LVD4 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LVD4_CLOB8 Length = 689 Score = 532 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 117/505 (23%), Positives = 213/505 (42%), Gaps = 37/505 (7%) Query: 161 IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWD 220 I L LA+ ++ L L +L +LE++ DG+ + Sbjct: 186 ILLINRTPIIIDKKPKGALAVFNDISKLEKVKDELKTVKDLKERLQLILETVQDGICVIN 245 Query: 221 EQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQ 280 G + ++N R+L + I ++ A + + +K + + Sbjct: 246 SDGYITYVNKAYLRILNEKEEDILNKNIRDVSPEGARI-KVLKTGESI---IGAISYKEN 301 Query: 281 FIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTS----------------QLGKVSHT 323 + V + PI I+ + T + ++ V ++++L + K Sbjct: 302 GVIIVSNVNPIVIDGEITGVVSIVKNVTEVQKLSEKLTQVSAKADYLEEELMRTKKPDSA 361 Query: 324 FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVN 383 F+ + + +AA++ VL+ GE G GK L+++ IH S+ + GP+I VN Sbjct: 362 FSKYIGHSGKILDALATTLKAAKTDTTVLIRGESGTGKELIAEGIHFSSKNSKGPFIRVN 421 Query: 384 CELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVI 440 C L E G + T +L + ELA GT+ L++I + +Q+ +L+VI Sbjct: 422 CAAIPQNLLESELFGYEKGAFTGAIKRKLGKFELAQNGTILLDEIGEMDKSMQAKVLRVI 481 Query: 441 KQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRG 500 ++ R+ I I+V++IA T +L +V+ F LYY L+ I +PPLR R+ Sbjct: 482 QEKEFQRIGGEETIKINVRIIAATHRNLEEMVKSMEFREDLYYRLNVIPIFLPPLRERKQ 541 Query: 501 SIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRI 559 I L+ + + + KR + R+ + +DA+ L+ WPGN EL +++E + ++ I Sbjct: 542 DIAPLLEHFIDKIGKRINKRITVVTNDAMESLLEYKWPGNIRELENLVERIMALNETEVI 601 Query: 560 RVSDLPEHLFTEQATDDVSAT-----------RLSTSLSFAEVEKEAIINAAQVTGGRIQ 608 +SDLP ++ + T + L E EK I A + G Sbjct: 602 ELSDLPAYMRKDINTVKNAIKSKNNNEIDMLIETDEILPLKEYEKIIIEKALKKY-GSYN 660 Query: 609 EMSALLGIGRTTLWRKMKQHGIDAG 633 LG+ T+ K +Q+GI+ Sbjct: 661 AAGKALGLTHKTVAAKARQYGIEKK 685 Score = 68.5 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 17/132 (12%), Positives = 56/132 (42%), Gaps = 4/132 (3%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 ++ + + + N + L + ++ +G+I+ DE+ + N +A R+L + + + Sbjct: 92 DLEDKSTINQVDNIINNNTITLEHVFSNIPNGIIATDEKDIISIFNEEAERLLGISSGDA 151 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL 303 G+ + E++ L + + V+ ++ I + II+ + + + Sbjct: 152 IGKKVYEIIEF-TNLHEINRTGKSELMVKEIINNR---ILLINRTPIIIDKKPKGALAVF 207 Query: 304 HPVEQMRQLMTS 315 + + ++ ++ Sbjct: 208 NDISKLEKVKDE 219 >UniRef50_C9XRJ3 Sigma-54-dependent transcriptional activator n=5 Tax=Clostridium difficile RepID=C9XRJ3_CLODC Length = 596 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 114/476 (23%), Positives = 217/476 (45%), Gaps = 29/476 (6%) Query: 185 VGNLLLTDSLLAETNRHLN----QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 + +L + + HL L ++ + +G+ + + +G + N + + Sbjct: 125 IIGVLKQEHIRDYLYMHLEDYGLTLKYIIGQIKEGICAINNEGVVILWNKFMEERYDIKS 184 Query: 241 TASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSF 299 GR + E L + ++ + + F + + + A++ PI + + Sbjct: 185 EDIVGRPMNEFLE-NTISEKVLNSKVGMSD--LYFTDKKENMYALVHANPIFYKEEFIGV 241 Query: 300 ILLLHPVEQ--------------MRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAA 345 + V + ++ L +F + + + +Q A Sbjct: 242 VCTEVDVTEAKILALELEKVNDTLKYLKNEVKNLSKGSFDKILGKSYKLEKSKAIAKQVA 301 Query: 346 RSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RT 402 R++ + + GE G GK + ++AIH+ SER G +I VNC + EF G + T Sbjct: 302 RTNSSIFIWGESGTGKEVFARAIHDYSERK-GQFIPVNCSAIPNELFESEFFGYESGAFT 360 Query: 403 DN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 + GR+ ELA GT+FL++I L + +Q+ LL+V+++ I R+ I I+ ++I Sbjct: 361 GASKKGRIGIFELAKDGTVFLDEIADLPLSMQAKLLRVLQEKEIRRVGGDTTIKINPRII 420 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 + T DL+ +V+ +F LYY L+ EI IPPLR R+ I LV++ L + K+ + + Sbjct: 421 SATNKDLSKMVKAEKFREDLYYRLNVVEIKIPPLRERKEDIGLLVHSFLEEICKQNNKPV 480 Query: 522 -KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSA 579 I D + + W GN EL + IEN+ + S N +I V D+P ++ + + Sbjct: 481 LTISKDVIDIFQNYRWKGNIRELKNTIENIVVLSQNSKIDVDDVPSYMMDSTNNSTEEEE 540 Query: 580 TRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQF 635 L + + ++E + I A +++ G + + +L I RTTL+ K+ Q+ ID + Sbjct: 541 YPLDLTKATQKIEIKNITKALKMSNGNKAKAAKILNIPRTTLYYKIDQYKIDVSKI 596 >UniRef50_A5I3D4 Putative sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A5I3D4_CLOBH Length = 591 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 107/510 (20%), Positives = 223/510 (43%), Gaps = 23/510 (4%) Query: 138 QVLWNWAFCATPLFDSKGRLTGTIALACPVEQTT-------AADLPLTLAIAREVGNLLL 190 + +A P+ + G I + E+ + + ++ + ++ Sbjct: 90 ERCTEYATIGYPIIMED-EVIGVIGINIFNEKQLNMISKEFDSMITFLNRLSTLLVGNII 148 Query: 191 TDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITE 250 + + + N +++S+ G++ D G L++IN + ++L + + I + Sbjct: 149 YYDTIKKLQIQTEETNHIIDSLSHGIMCVDNNGILKYINHKGKKLLDIKEKSLVNTNIKD 208 Query: 251 LLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMR 310 ++ + + K + +++ + + ++ I +++++ Sbjct: 209 TISNFNIKLLS----KEYKGKRISIHGKNESFLIKSSPIIFKGERVSNIIEFNKKIDEVQ 264 Query: 311 QLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 F + + + + A++ VLL GE G GK L ++AIH Sbjct: 265 AAYKLFASSKIIKFEDIMGSSNNIKNVKLIAKNIAKTDSTVLLRGESGTGKELFARAIHF 324 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIE 426 ES+R P+IAVNC D L EF G + + + G++ + ELA+GGT+FL++I Sbjct: 325 ESQRCDAPFIAVNCASIPDNLLESEFFGYEGGAFSGAKREGQMGKFELANGGTIFLDEIG 384 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 L + LQ +L+V+++ T++ + I +DV++IA T DL +V+ +F + LYY L+ Sbjct: 385 DLPLHLQPKILRVLQEQSFTKIGGKEEICVDVRIIAATNRDLEAMVKHGQFRQDLYYRLN 444 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYS 545 I +P L+ R I L + +R + ++K + + +WPGN EL + Sbjct: 445 VIPIYLPSLKDRGEDIILLSEYLMDKFCERSNLKIKQLSKEVKDSFKKYSWPGNIRELEN 504 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTG- 604 VIE + ++ I LP+ + + + S + EK +I+ + G Sbjct: 505 VIEYIVNTTKENIIYNEHLPKSFK---ISKEDEKSNKSLQDRLYKYEKNLLISMMEEYGE 561 Query: 605 -GR-IQEMSALLGIGRTTLWRKMKQHGIDA 632 G+ + ++ L I +TL+RK+ ++ + Sbjct: 562 DGKGKERIAKELDINLSTLYRKLNKYNLQK 591 >UniRef50_B8FXN8 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8FXN8_DESHD Length = 574 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 108/493 (21%), Positives = 213/493 (43%), Gaps = 25/493 (5%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 ++ + + + +++ + L N L+A++ES+ DG++ Sbjct: 86 ISNRGPICKDGKIVGAIGVFQDISDFEALSLELDNVKEINNDLDAIIESVADGIVVGSAD 145 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 G + N+ ++ + G+ + EL+ + + + K Sbjct: 146 GMILRANSAYLQITGIQEKEFVGKNVRELINQGYMNKSVTEMVFRTKSR-VNVVDIRSGK 204 Query: 283 DAVITLKPIIETQ--GTSFILLLHPVEQMRQLMTS---------------QLGKVSHTFA 325 + ++T P+ + T + ++ + ++ +L + + + F Sbjct: 205 ELLMTGAPVFNEEKEVTRVVTIVRDISELTELKGKLEQAEDAKNRYLKELEHFRSQNAFK 264 Query: 326 HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCE 385 + + ++ + AR VL+ GE GVGK L++Q IH S R+ P+I +NC Sbjct: 265 KIITKNNDMQKKLDTAYHVARVDSTVLILGESGVGKELIAQLIHRASHRSEKPFIKINCG 324 Query: 386 LYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIK 441 L EF G + T + G+ ELA GGTLFL+++ L +E Q +L+ I+ Sbjct: 325 AIPANLLESEFFGYEAGSFTGALKEGKKGLFELADGGTLFLDEVGELPLEHQVKVLRAIQ 384 Query: 442 QGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGS 501 + I R+ ++ I +D+++IA T DL ++ + F LYY L+ +TIPPLR R+ Sbjct: 385 EKEILRVGGKKTIKLDIRIIAATNRDLEAMIREKAFREDLYYRLNVVPMTIPPLRQRKED 444 Query: 502 IPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRV 561 + + L + + I + + L++ WPGN EL + IE L ++S + I Sbjct: 445 VIPIALELLARYNTAYGYQKWIHPEVMDCLLNYDWPGNIRELENTIERLVVTSMDDCITK 504 Query: 562 SDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTL 621 + E S + E + A ++ G ++ +A+LGI ++++ Sbjct: 505 DAMAE--IKYIDVHPAPNGLTSLKAFLEKEENRLLEEAYRL-MGSTRKAAAVLGISQSSM 561 Query: 622 WRKMKQHGIDAGQ 634 +KMK++GI+ Sbjct: 562 VKKMKKYGIEIQN 574 Score = 76.2 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 47/125 (37%), Gaps = 8/125 (6%) Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAH 266 + +S+ +GV++ D+QG ++ N AA+++ + + GR + E++ + L + +K Sbjct: 13 EIFDSIYNGVVAIDQQGIIKLFNEAAAKIMGVAKEETIGRRVEEVIPNTS-LLEILKTGK 71 Query: 267 PLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQLGKVSHT-- 323 + + + + PI + + I + + L Sbjct: 72 AENNQKMHL----GNCEIISNRGPICKDGKIVGAIGVFQDISDFEALSLELDNVKEINND 127 Query: 324 FAHMP 328 + Sbjct: 128 LDAII 132 >UniRef50_A4J8D6 Putative PAS/PAC sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J8D6_DESRM Length = 591 Score = 531 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 123/505 (24%), Positives = 225/505 (44%), Gaps = 39/505 (7%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALL 209 +F+ K +LTG + + L + R + N T+ LAE +L +++ Sbjct: 106 IFNQKQKLTGVLT-----------RIDLINKVHRALEN---TEDKLAEAFETNQRLRSII 151 Query: 210 ESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL-LTLPAVLQQAIKQAHPL 268 E+ DG+I D QG +Q +N+ R L+ + G ++ ++ L + + ++ Sbjct: 152 EASYDGIIVVDSQGVVQMVNSSYFR-LQDSSHDPAGTSLEQIPLDCHDDVIKVFQEVMQQ 210 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVSHTFA- 325 V + IT PI++ Q ++ LH ++ QL +L ++ Sbjct: 211 GKVAFARYQGENLSELTITGSPILDDQNSPVHVVISLHDFTELNQL---RLQSARYSEEL 267 Query: 326 ---------HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 + D R++ + + VL+ GE GVGK ++++ IH S RA Sbjct: 268 KSLRTKNQKDLIFHDTAMERVVKKALRVSEVDSTVLITGESGVGKEVIARTIHRNSPRAE 327 Query: 377 GPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVEL 432 GP+I +NC + L E G + T + G+ +ELA+GGTL L+++ L + L Sbjct: 328 GPFIEINCGAIPEHLLESELFGYEKGAFTGANKEGKPGMMELANGGTLLLDEVGDLPLNL 387 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+ +++ I R+ R + ++V+++A T +L ++ + +F L+Y L+ I I Sbjct: 388 QVKLLRALQEQEIYRIGGRTAVKLNVRILAATNKNLEQMIAEKKFREDLFYRLNVVPIHI 447 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLAL 552 PPLR R+ I L + L +++ + WPGN EL +++E L + Sbjct: 448 PPLRERKSDILPLSMHFLEKFNNKYNFHRLFSSEVFKLFEQYPWPGNIRELANLVERLII 507 Query: 553 SSDNGRIRVSDLPEHLFTEQATDDVS---ATRLSTSLSFAEVEKEAIINAAQVTGGRIQE 609 S+ I LP F + +T + + + +VE E I+ A + ++ Sbjct: 508 MSEQETIYPDQLPPTFFGKPSTSPLQISIDEIIPLKEAREQVESELIVKALKQYR-SLRR 566 Query: 610 MSALLGIGRTTLWRKMKQHGIDAGQ 634 LG+ +TL RK + GI + Sbjct: 567 AGDALGVAHSTLLRKARALGISVEE 591 >UniRef50_Q17ZX8 Putative sigma-54 interacting protein n=8 Tax=Clostridium RepID=Q17ZX8_CLOD6 Length = 591 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 119/504 (23%), Positives = 221/504 (43%), Gaps = 22/504 (4%) Query: 143 WAFCATPLFDSKGRLTGTIALACPVEQTTA-------ADLPLTLAIAREVGNLLLTDSLL 195 +A P+ G G I L ++ + +A + N L Sbjct: 92 FAEVCCPIIC-DGVSHGVIGLIAFTKEQAQIIENNKSGLINFLGKMADLISNKLKAQIKT 150 Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 E +L LL +MD V+S D G + N++ + + + G+ I + L Sbjct: 151 YELELEKKKLETLLNNMDKAVVSIDVDGKIDKYNSKFKELFNIK-DSITGKNI--FVELD 207 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITL-KPIIETQGTSFILLLHPVEQMRQLMT 314 + + +I K ++ + + K +++ + +++ + Sbjct: 208 FIKKPSINNFKKDKSCSFFYKRYGYDSKGIYNINKIVLKNELKGYVIDFIDKRDAIKNYN 267 Query: 315 SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 ++ + R A++S+ VL+ GE G GK L ++AIHN S R Sbjct: 268 KMNKDYRIKLENIIGESVAIRNSKKEALIASKSTSTVLITGESGTGKELFARAIHNHSNR 327 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG-RLSRLELAHGGTLFLEKIEYLAV 430 P+IAVNC D L E G + T + G +L E+AH G++FL++I +++ Sbjct: 328 VDNPFIAVNCAAIPDNLLESELFGYEEGAFTGAKKGGKLGMFEVAHKGSIFLDEIGDMSL 387 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 LQS LL+V+++ + ++ ++ + IDV++IA T DL +V+ F LYY L+ I Sbjct: 388 HLQSKLLRVLQEKELNKIGSKSNVSIDVRIIAATNKDLEKMVQNGTFREDLYYRLNVIPI 447 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALARLVSCAWPGNDFELYSVIEN 549 +P LR R+ IP ++ + ++ K+ + ID + ++ WPGN EL ++IE Sbjct: 448 KLPSLRERKEDIPLIIKHMVKEYSKKLDKNVIDIDSRVVDAMMEYKWPGNIRELQNIIEY 507 Query: 550 LALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQ- 608 S + I ++ +P+ + + + + + + E+EK II A + Sbjct: 508 SVNMSSSSIITMNVIPQKI--KNTSVEELEVKSDRIIPLDELEKIEIIKALNKYKDYKKD 565 Query: 609 --EMSALLGIGRTTLWRKMKQHGI 630 + LGI R TL+RK++++ I Sbjct: 566 KELTAKALGISRATLYRKIEKYNI 589 >UniRef50_C1PBV8 Putative sigma54 specific transcriptional regulator n=1 Tax=Bacillus coagulans 36D1 RepID=C1PBV8_BACCO Length = 553 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 115/463 (24%), Positives = 210/463 (45%), Gaps = 13/463 (2%) Query: 173 ADLPLTLAIA-REVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 L L +A + V L ++ + + L++S+ + D+ G +Q +N Sbjct: 93 QYLKLLSELACQWVAEKLERETWQKKFGEIHLETRKLIQSITEPFCLVDQDGRIQEMNEH 152 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 A + R T G IT+ +T ++IK T++ + Sbjct: 153 MASLFRKRRTTLMGEKITQYITKEKW--ESIKSGKEKDETVVQVPRIKGE-AYFATIQLV 209 Query: 292 IETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 QG ++L ++ + Q G+ + F + ++ I ++ ++S + Sbjct: 210 KNKQGIVSYMILLKSKKTEK--PEQAGRRLYHFEDILGVSEILKQTIQSAKRVSKSDVTI 267 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGR 408 +L GE G GK + +QAIH+ESER P++A+NC + L E G + T E + Sbjct: 268 MLRGESGTGKEMFAQAIHHESERKNQPFVALNCAAIPENLLESELFGYEKGAFTGAEKEK 327 Query: 409 LSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 R ELA+ GTLFL++I +++ LQ+ +L+V+++ + R+ + + IDV++I T +L Sbjct: 328 PGRFELANHGTLFLDEIGDMSLYLQAKILRVLQEKTLERIGSNKSRKIDVRIITATHRNL 387 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDA 527 L+ + F LYY + I IPPLR R+ +P L+ + ++ K + K + + Sbjct: 388 EELIRKGEFREDLYYRISVIPIYIPPLRARKEDLPILIEHFIQKFSKDLNRDSKNLAAET 447 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 L RL+ WPGN EL +V+ + + + LP L + S T+ Sbjct: 448 LDRLMQYDWPGNIRELQNVVRHFVELQIGDTVTLESLPSSLQRGAKSFPPSVKPKRTNHY 507 Query: 588 FAEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQ 627 +EK ++ + G ++ +A LGI TL+R +K+ Sbjct: 508 QTRLEKRKVLELLERNGWSTEGKKKTAADLGISLATLYRYLKK 550 >UniRef50_C5ESD9 PAS modulated sigma54 specific transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESD9_9FIRM Length = 474 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 118/470 (25%), Positives = 210/470 (44%), Gaps = 28/470 (5%) Query: 184 EVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATAS 243 + + L+T E + L +LE+ D+ VI D +G + +IN A + + Sbjct: 11 SLESRLITTEYFKEWD--AQILLEILENADNAVIVIDCKGTVVYINRFYAEHMNIKLEKL 68 Query: 244 QGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE--TQGTSFIL 301 GR + ++ A L + ++ + E + + ID+V P+ + + Sbjct: 69 MGRNLYDIEPQ-AKLLRVMEDGGGRDNDEVEYI-KSLNIDSVGLAFPLYDSRKEKVGACA 126 Query: 302 LLHPVEQMRQLMTS---------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 + V Q+ +L + ++ +F + ++ + + A Sbjct: 127 IFKDVTQVVELTRKLQKSKEMVQYLASQLEASELPISFQSYISQNKDLQKTLSLAAKVAN 186 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD 403 ++ +L+ GE GVGK ++++ IHN S R P I VNC + L E G + T Sbjct: 187 TNCTILIQGESGVGKEVMAKCIHNASNRKERPMIKVNCASIPENLLESELFGYEEGAFTG 246 Query: 404 N-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIA 462 + G+L + ELA+ GT+ L++I +++ +QS LL+V+++ + R+ + I +DV+VIA Sbjct: 247 ARKGGKLGKFELANKGTILLDEIGDMSLTMQSKLLRVLQEKELERVGGTKTIKLDVRVIA 306 Query: 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK 522 T +L +VE+N F LYY LH I IP LR RR I LV + T Sbjct: 307 ATNQNLEEMVEKNEFRSDLYYRLHVVPIHIPALRCRREDIMPLVRYFIERNGGDEGTD-- 364 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL 582 + A L WPGN EL +VIE + + + D P++L + A D + Sbjct: 365 LTPGAARMLEEYGWPGNVRELQNVIEYAMIVKTGDILEIKDFPQYLRGDGAEDGPAEDGP 424 Query: 583 -STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + ++EK I A + G LG+ R + + K++++G+ Sbjct: 425 CRLKDAVEQLEKSMIKRALKRNNGNKSMAINELGLSRRSFYEKLEKYGLK 474 >UniRef50_B8G264 Putative sigma54 specific transcriptional regulator n=2 Tax=Desulfitobacterium hafniense RepID=B8G264_DESHD Length = 540 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 111/454 (24%), Positives = 204/454 (44%), Gaps = 22/454 (4%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 R +L +L+ + +G+I+ + + IN AA++ + + L A Sbjct: 80 YERREQELKTILDLVSEGIIAVNTNHKVTHINEVAAQIFHTTPEEALNQDAELLFEADAP 139 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE--TQGTSFILLLHPVEQMRQLMTS 315 + + +K P E + I + + PI+ Q ++ + Q+ +L++ Sbjct: 140 IFETLKTGIPYSLKERKIRKNQKLIHFLTSGVPILNKRGQIIGGVMTIKDFRQVEELLSK 199 Query: 316 -QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESER 374 + S F + + + R LI + AR + +LL GE G GK L ++AIH ES R Sbjct: 200 VERKPQSINFDSIIYESRRMRDLIETAKTVARGTSTILLRGESGTGKELFAKAIHAESPR 259 Query: 375 AAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAV 430 + +I +NC D L E G + T + G+ E AHGGTLFL++I + Sbjct: 260 SRQAFIPINCAALPDTLLESELFGYEEGSFTGATKGGKKGLFEQAHGGTLFLDEIGEITP 319 Query: 431 ELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEI 490 ++Q LL+V+++G I R+ + IP+DV++IA T +L L+++ +F LYY L+ + Sbjct: 320 QVQVRLLRVLQEGTIRRIGGSKEIPVDVRIIAATHRNLEELIDKGQFREDLYYRLNVIPL 379 Query: 491 TIPPLRMRRGSIPALVNNKLRSLEKRFST-RLKIDDDALARLVSCAWPGNDFELYSVIEN 549 IP LR R IP + R + ++ + + ++ L + WPGN +L +++E Sbjct: 380 HIPSLRERPEDIPLIAQVLTRKIARKLGKSEVHLTKESADLLRAQKWPGNVRQLENLLER 439 Query: 550 LALSSDNGRIRVS------DLPEHLFTEQATD-------DVSATRLSTSLSFAEVEKEAI 596 + + N I+ DL L ++ + A+VE++ + Sbjct: 440 IINLNSNSEIKPDSFYEWGDLTPALPVSESENTAHQLIIPFGEPWPPLKDIVAQVERQVL 499 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + +LG+ TT+ KM +G+ Sbjct: 500 LKVLAEHPSSR-KAGKILGVSNTTILNKMNSYGL 532 >UniRef50_A1HQW3 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQW3_9FIRM Length = 522 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 113/468 (24%), Positives = 220/468 (47%), Gaps = 15/468 (3%) Query: 173 ADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 L ++ +E+ + L + +L++ DG I D+ G ++ N++A Sbjct: 60 HAEILAVSGVQELTEIDLIA-----FEEREQLIETILDASSDGFIVIDKDGTIKLTNSRA 114 Query: 233 ARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII 292 ++LR A +G++I +L P ++++A+ + + + +E +++ + + Sbjct: 115 IQILR-QAGNLEGKSIYTILPAPDIIKKALSKGIEISNHTLFYEHGGGTCHCLVSSRTLK 173 Query: 293 ETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 G IL L + +R+++ S TF + P ++ R A+++ Sbjct: 174 NEAGVIQGLILTLRDMHDVREMVYSITQARQITFNDIVTKSPSMLSVVALARNIAKNNST 233 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG 407 VL+ GE G GK L ++AIH +R P+I +NC D + E G + T + G Sbjct: 234 VLIRGESGTGKELFARAIHAAGKRHNKPFIPLNCAAIPDTLIESELFGYEDGTFTGGKKG 293 Query: 408 RLS-RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 ELAHGGTLFL+++ L+ +Q+ LL+V+++G++ R+ + I +DV++IA T Sbjct: 294 GKQGLFELAHGGTLFLDEVAELSAYVQAKLLRVLQEGMVRRVGGHKEIAVDVRIIAATNR 353 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDD 525 +L +++ +F L+Y L+ + IPPLR IP L+++ ++ L + + + Sbjct: 354 NLEAMLKNGQFREDLFYRLNVIPLYIPPLREHIEDIPLLIDHFIKVLGGKLGKPDIVVSP 413 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-EHLFTEQATDDVSATRLST 584 A+ +++ WPGN EL +V+E D I + +Q V+ Sbjct: 414 RAVEKMLRYPWPGNVRELSNVVERAIYLCDGRVITEDHIVFAQAAVDQPAAAVNDAIPLL 473 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 + E++ I A + G +++ + LG+ T L +MK+ I Sbjct: 474 REAVEATERKLIAEAIRRY-GSLRQAAKALGVTHTLLINRMKKLNIHK 520 >UniRef50_B8G0N2 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfitobacterium hafniense RepID=B8G0N2_DESHD Length = 663 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 131/645 (20%), Positives = 247/645 (38%), Gaps = 35/645 (5%) Query: 1 MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAA 60 M G D + ++ SW R + H + + R L Sbjct: 30 MEGK-PVDPGIVPKVVYNSWVRSQRYGVDPFEKPCHHPIDKSKSKELSRFIECLERYNFF 88 Query: 61 LEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSL 120 ++ A E + + + + L + N C+E +GT A ++ Sbjct: 89 IKQALELIDYQGFTFTFSAKESLT------KHIYDDLGSPFANLIGECSERTVGTNATAI 142 Query: 121 AAISGQAVKTMADQHF-KQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 A V ++ + N A P+ + +G + G I + + T L Sbjct: 143 ALAENVPVALVSSLSYQYWPAENGVNTAAPIHNHQGEVMGGIHIGLKDIKRTQDAFWLVT 202 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLD 239 +A+ + L T +H ++ +++ + GV + + ++ N + ++ L Sbjct: 203 YLAQ-----VFDRLYLPMTQKHEKKIKDIIDLLPQGVAYINNKKSI-HYNEKFQTLVNLS 256 Query: 240 ATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSF 299 + + ++E + Q S + T K I + S Sbjct: 257 KGKNSLKKVSEFFSQEDWTSIFACQEIKADGKTLIINSNSLDYEDFETSKIFIVEEKQSL 316 Query: 300 ILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGV 359 L Q S+ ++F + ++ + G A +S PVL+ GE G Sbjct: 317 TQRLQENSQ-----GSKTTVGLYSFDDIVGNNAELNEAKSIGLNVAGTSVPVLIFGENGT 371 Query: 360 GKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELA 415 GK + +QAIH S R P+IA+NC + E G + T + G++ ++E A Sbjct: 372 GKEMFAQAIHAASPRREKPFIAINCGAIPAELVESELFGYEEGSFTGALKGGKIGKIEAA 431 Query: 416 HGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQN 475 GGTLFL++IE + V+ Q LL+VI G + ++ + + IP+D+++I+ T DL ++ Sbjct: 432 SGGTLFLDEIESMPVQDQIKLLRVISTGKVQKVGSTKEIPVDIRLISATKKDLLEESDKG 491 Query: 476 RFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS--TRLKIDDDALARLVS 533 F LY+ + F I +P LR RR I L + +++ +++ + + L + Sbjct: 492 LFREDLYFRISTFIIELPALRQRREDILLLTKEFISKFSRKYGLEQTVEMAQEFVEALEN 551 Query: 534 CAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQATDDVSATRLS--------- 583 +W GN EL IE + G ++V L + + V Sbjct: 552 YSWRGNVRELEHSIERAIILMGAGLTLKVDYLSKRIQESYQNYQVKGLVEDVLAKGLKKQ 611 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 E I + + GG + + LG+ R T++ K+++H Sbjct: 612 EQGLLYTAEAMIIDHVLKSVGGNVTAAAEKLGVTRKTIYNKLQEH 656 >UniRef50_C8X1R7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X1R7_DESRD Length = 471 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 109/462 (23%), Positives = 204/462 (44%), Gaps = 25/462 (5%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT---- 249 ++ LN +++SM +GV + D QG + N + A+ + GR+ Sbjct: 3 EQTHAVWNVRFLNQIMDSMAEGVFTLDVQGRITSWNRSMEDITGYSASEALGRSCRFLGF 62 Query: 250 -----ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILL 302 L ++ P + + + + + + + G + Sbjct: 63 SHCLGTLCPADIHQCGILRHEQPEAKECVLRHREGRDVPVIKQARVVKDDNGELIGIVET 122 Query: 303 LHPVEQMRQLMTSQLGKVS-----HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 + + ++++ ++ ++ + + R AA S VL+ GE Sbjct: 123 VTDMTELQKARHKAEEATRLLGQHYSLGNIMGKSEVMQEVFSRVRAAAASRSTVLIQGES 182 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLEL 414 G GK L+++AIH S++A P++ VNC + L E G T R R E Sbjct: 183 GTGKELIARAIHYNSDQADQPFVTVNCSALTETLLESELFGHVKGAFTGAVRDRAGRFEE 242 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 AH G++FL++I L+ +Q LL+V+++ + R+ + ID++VI T DL L+ Q Sbjct: 243 AHRGSIFLDEIGELSQTIQVKLLRVLQEREVERVGDSQTRTIDIRVIVATHRDLNELLAQ 302 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVS 533 F + LYY L F IT+PPLR RR +P LVN+ + + R+ + +A+ + Sbjct: 303 GVFRQDLYYRLKVFPITLPPLRQRREDLPLLVNHFIAKQNEATGKRVTGLAPEAMRLVFE 362 Query: 534 CAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVS-----ATRLSTSLSF 588 WPGN EL + IE+ + + +I+V+DLP + T + + + + + Sbjct: 363 YHWPGNVRELENAIEHAFVLTSGEQIQVNDLPAEIITPRPSPERAREAGVPRTAGSRQHH 422 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + ++E ++ + ++ LG+ RT +W+ MK+ GI Sbjct: 423 EQPDREQLLALLEANQWNKAAVARQLGVSRTAVWKYMKKWGI 464 >UniRef50_A7GID7 Sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GID7_CLOBL Length = 542 Score = 530 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 112/477 (23%), Positives = 208/477 (43%), Gaps = 34/477 (7%) Query: 181 IAREVGNLL--LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 A + L + L+ +N +L ++++ ++ D+ G + ++ + + Sbjct: 72 CATTIDYKLYSEMKKDIKYYKSVLDVVNKVLYTINECIVVVDQNGIIIMMSECYKKFINC 131 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ--- 295 G+ + +++ +L + +K + + + P+ + Sbjct: 132 KDPE--GKYVGDVIK-DTMLHRVLKTGNIESGEVQKINGK----QVITMRIPLKKEGRII 184 Query: 296 GTSFILLLHPVEQMRQLM----------------TSQLGKVSHTFAHMPQDDPQTRRLIH 339 G ++ V L + + + + F + D ++ + Sbjct: 185 GAIGKIMFKDVNDFYFLYGKLNKSKNTHKCYDNKSEKNRRAKYFFKDIVGDSSESNNIKS 244 Query: 340 FGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG 399 +++A ++ VL+ GE G GK L + +IHN S R GP+I +NC L E G Sbjct: 245 LAKKSANTNSNVLIVGESGTGKELYAHSIHNASNRRLGPFIKINCGAIPAELLESELFGY 304 Query: 400 D---RTDNENGRLSR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIP 455 + T + G ELA+GGT+FL++I + + +Q LL+VI++ + ++ L Sbjct: 305 EDGAFTGAKKGGKKGKFELANGGTIFLDEIGDMPMCMQVKLLRVIQEREVEKVGGNILKK 364 Query: 456 IDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEK 515 IDV++IA T +L LVE+N+F LYY L+ I +P LR R+ I + + ++ + Sbjct: 365 IDVRIIAATNKNLEKLVEKNKFREDLYYRLNVIRINVPSLRERKEDILLISDFLVKKVSH 424 Query: 516 RFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALSSDNG-RIRVSDLPEHLFTEQA 573 R +K I +A L + WPGN EL +VIE A D+ I+ LP+ + Sbjct: 425 RLGICIKGISKEAKEYLCNYNWPGNIRELENVIERSANLLDSDFVIKPKHLPKEILKSYI 484 Query: 574 TDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + +EVEKE I N + G + S +LGI R L++K+ ++ I Sbjct: 485 VKAPTKENKYLKDIISEVEKEVICNCLEKNNGNKNKTSKILGISRANLYKKISEYNI 541 >UniRef50_A1HSG4 Putative PAS/PAC sensor protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HSG4_9FIRM Length = 559 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 112/475 (23%), Positives = 202/475 (42%), Gaps = 25/475 (5%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 N L D ++ + +L A+ ES DG++ DE G IN+ R+ + G+ Sbjct: 80 NAELRDLVINKLEEINKELEAIFESSHDGIVVADENGVFIRINSSYERITGIPREEIIGK 139 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--LH 304 ++ V ++ +VIT P+ ++ ++ + Sbjct: 140 TAQSIVEKGLVSDSVTIHVLKTGQSHTFSQTFRSGRQSVITGSPVFDSNNRIIRVVTNVR 199 Query: 305 PVEQMRQL----MTSQLGKVSHT-----------F-AHMPQDDPQTRRLIHFGRQAARSS 348 + ++ +L SQ ++ F + + + + A+ Sbjct: 200 DMTEINRLKEELAESQKKLTQYSQIVETMTEEQMFNEKLIFRSRKMEVVRDSAIKFAKVD 259 Query: 349 FPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE 405 P+L+ GE GVGK +++ ++ S R P++ +NC + L E G + T + Sbjct: 260 APLLITGESGVGKEVIADLVYRYSPRKGLPFLKINCGAIPETLLESELFGYEGGAFTGAK 319 Query: 406 N-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATT 464 GR E+A+GGT+ L++I L + LQ LL+ ++Q R+ ++++ +DV++IA T Sbjct: 320 KEGRTGLFEMANGGTVMLDEIGELPLALQVKLLRFVQQKEFYRVGGKKVVKVDVRLIAAT 379 Query: 465 TADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKID 524 DL +V Q +F L+Y L+ I IPPLR R I LVN L K+++ +I Sbjct: 380 NRDLQEMVNQKQFRSDLFYRLNVLRIHIPPLRERPEDIIPLVNYLLDKYNKKYNVSKRIS 439 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQA--TDDVSATRL 582 D + W GN EL ++IE L + D I + LP+ + DD Sbjct: 440 GDVYHAFTNYTWVGNVRELENLIERLVVICDRDEITLDYLPDEMKKAIYVWRDDSIGREQ 499 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKR 637 + + E E+E A + + + LG+ +T+ +K ++GI R Sbjct: 500 TYKEAKEEFEREFFCRALEKYKSSR-QAAEKLGLDHSTIVKKAAKYGIKLLSRSR 553 >UniRef50_B8FIT8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIT8_DESAA Length = 588 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 109/454 (24%), Positives = 202/454 (44%), Gaps = 21/454 (4%) Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 E +H +L A+ S+ D +++ D+ + N AA + + A + L Sbjct: 138 RKAEMELAKHKTRLEAIFRSVKDAIVTVDQDLKVIDANKAAATLCGIAAKNVKNNPF-AL 196 Query: 252 LTLPA------VLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPI--IETQGTSFILL 302 VL + +K+ ++ + + + V ++ P+ + + +L+ Sbjct: 197 CPTDCCQACRDVLAETLKRKTAIREFQVECNHKQRPQQKVSLSSAPLESQDGEFLGAVLV 256 Query: 303 LHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKA 362 + + ++ L + + F ++ + + + A VL+ GE G GK Sbjct: 257 IRDITRLVDLERE--LQERNQFHNIIGASHKMQAVYQLLENLADFETTVLITGESGTGKE 314 Query: 363 LLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGT 419 L+++A+H+ RA P+++VNC + L E G T R + AH GT Sbjct: 315 LVAKALHHTGSRAFKPFVSVNCSALAENLLESELFGHVKGAFTGAIRDYQGRFQAAHTGT 374 Query: 420 LFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSR 479 L L++I ++ +Q LL+V+++ R+ + I +DV+VIA T DL V F Sbjct: 375 LLLDEIGDISPRIQLKLLRVLQEREFERVGDVQPIKVDVRVIACTNQDLKEKVGLGEFRE 434 Query: 480 QLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPG 538 LYY L+ EI +PPLR RR IP L ++ EK+F+ + + D + ++ WPG Sbjct: 435 DLYYRLNVMEIKLPPLRERREDIPLLADHFTARFEKKFNITIPGVSDKVMNAFMNYHWPG 494 Query: 539 NDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIIN 598 N EL IE + + I + +P + + + + E II+ Sbjct: 495 NVRELEHSIERATVLCRDKMISLEHIPGEIAEAYSLSGPRLKKQPAAD-----EPNEIID 549 Query: 599 AAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 A + TG + + LLG+ R T++RK++++GI + Sbjct: 550 ALKRTGWNKAKAARLLGVSRKTIYRKIEKYGIQS 583 Score = 48.5 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 19/183 (10%) Query: 181 IAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDA 240 +A+E + L T L LE ++DG + D G Q+ N R++ Sbjct: 1 MAKEKEPQDPLELLEKVTQERDALLTVFLE-IEDGYVECDLAGFTQYFNPALCRIVGYPP 59 Query: 241 TASQGR---------AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 +G ++ + + + + + ++ ITL+ Sbjct: 60 REMKGMGYKTYLDKENAQQVFRVFNEVYLTGQPKKAFNYEITRKDGSKSVVEISITLRRN 119 Query: 292 IETQGTSFILLLHPVEQMRQ---LMTSQLGKVSHTF----AHMPQDDPQTRRLIHFGRQA 344 E + + ++ V R+ + ++ F + D + +I +A Sbjct: 120 KEGEPDGYRCIMRDVTDRRKAEMELAKHKTRLEAIFRSVKDAIVTVDQDLK-VID-ANKA 177 Query: 345 ARS 347 A + Sbjct: 178 AAT 180 >UniRef50_A4IRU9 Sigma-54-dependent transcriptional activator n=3 Tax=Geobacillus RepID=A4IRU9_GEOTN Length = 486 Score = 529 bits (1365), Expect = e-148, Method: Composition-based stats. Identities = 108/471 (22%), Positives = 207/471 (43%), Gaps = 29/471 (6%) Query: 196 AETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLP 255 +H L+ + DGV D + + ++N ++ L G + +L Sbjct: 16 QHMLQHECVYKIALDHLYDGVFITDNECKILYVNEAYTKMSGLKYEDVVGHYVDDLEAKG 75 Query: 256 AVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLL--HPVEQMRQLM 313 + ++ ++ +IT KPI + +++ + + + Sbjct: 76 IFKNSTSPHVRRENKIISSIGKAKDGVEMLITGKPIYDENNELIYVVVNQRDISDLEIMR 135 Query: 314 TSQLGKVS-----------------------HTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 + + + D + R +I+ + A Sbjct: 136 QKLIVTENKMAVVEKERKKKEEENEYYKKQFFNNTGIIGDSEEIRDVIYLINKIAPLDVT 195 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENG 407 VL+ GE GVGK +++ I +S R +I VNC L E G + T + Sbjct: 196 VLITGESGVGKEVIANEIFQKSSRKNKQFIKVNCAAIPTNLLESELFGYEKGAFTGADKA 255 Query: 408 RLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTAD 467 + +LA GGT+FL++I + +E+Q LL+ ++Q + + ++ +DV++IA T D Sbjct: 256 KKGLFQLADGGTIFLDEIGDIPLEIQPKLLRALQQKEVVPVGGTQIQKLDVRIIAATNKD 315 Query: 468 LAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA 527 L+ V++ +F + LYY L+ F I IPPLR R+ I AL L+ K++ + + +A Sbjct: 316 LSQQVKEGKFRKDLYYRLNVFPIEIPPLRERKRDIYALGEYFLKQYNKKYGKSVVLSSEA 375 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLS 587 + L++ WPGN EL ++IE L + SD+ + D E + D++ + Sbjct: 376 YSLLMNYDWPGNVRELQNIIERLIIISDDQTVINKDQIEKIMFPNTMLDITKSEKGLKEI 435 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 E+EKE +I+ + T G ++ + L I ++TL +K+K++GI+ + + + Sbjct: 436 IQEIEKEILIDVLKNT-GTTRKAAKKLKIDQSTLVKKLKKYGINIDEIRHQ 485 >UniRef50_Q122Y8 Sigma54 specific transcriptional regulator with GAF sensor, Fis family n=1 Tax=Polaromonas sp. JS666 RepID=Q122Y8_POLSJ Length = 633 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 157/640 (24%), Positives = 263/640 (41%), Gaps = 45/640 (7%) Query: 4 AFNNDGRG----ISPLIATSWERCNKLMKRETWNVPHQ-AQGVTFASIYRRKKAMLTLGQ 58 AF +DG I + SW+RC + + V + A + ++ +L + Sbjct: 23 AFFDDGSAPAGLIDDPVLRSWQRCRGQGRGASEQVEFDPVDRLALARLLEAQRTLLEAAR 82 Query: 59 AALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCAL 118 L+ ++ A+ + D L+ G + F G +E +IGT A+ Sbjct: 83 PELDALARAVSDAGYAVLLTDVQGRALAVEGCTDRRSEPLRQAFRPGVDLSEAVIGTNAM 142 Query: 119 SLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLT 178 S A + V+ + +HF + CA P+FD +GR+ G + ++ + A + LT Sbjct: 143 SSAMTEQRVVRVLGPEHFFADNQIFHCCAAPVFDPQGRVVGAVDISRDMPGLAAGAVALT 202 Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AR + L R Q ++ D+ ++++ G L N A ++ + Sbjct: 203 QRCARRIERKLFEALPAFVRLRLETQ-----DASDEAWLAFNRDGGLLAANIAARHLIDV 257 Query: 239 DATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS 298 QG ++L A + Q + P+ Sbjct: 258 -PFVPQGLGFSDLFDGRFDTLAAAASQAS-GELSLRLRGGVQLRARASGVPPM-----AR 310 Query: 299 FILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEG 358 + + R + G VS +A + PVL+ GE G Sbjct: 311 SVATPNRSAPPRTAPRPEFGDVSFAAD------------FERALRAFNAGLPVLVTGETG 358 Query: 359 VGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-NGRLSRLEL 414 GK + ++A+H S R GP IA+NC +A E G T G ++E Sbjct: 359 AGKEVAARALHEVSHRHDGPLIAINCGAIAPQLMAAELFGHVEGAFTGARRGGSAGKIEA 418 Query: 415 AHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQ 474 A GGTL L++I + +ELQ LL+++ G + R+ A R + +DV+ + T DL LV Sbjct: 419 AQGGTLLLDEIGDMPLELQVGLLRMLDSGEVLRVGATRAVRVDVRFVCATHRDLRALVAS 478 Query: 475 NRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDAL-ARLVS 533 F LYY + F++ IPPLRMR N L +L ++ D L L S Sbjct: 479 GLFREDLYYRISGFQLQIPPLRMRSD-----FNAVLDALLAEQGCAPRLLDAGLRRALKS 533 Query: 534 CAWPGNDFE-LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATR-----LSTSLS 587 WPGN + +++ LAL + + +S P+H +++ V + R LS Sbjct: 534 RRWPGNVRQLRHALRLALALLEADEALTLSHFPDHEPDHESSLGVPSARPRTGAPDDGLS 593 Query: 588 FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + + +++AI A + TGG + +ALL IGR TL+RK+ + Sbjct: 594 WRQTQQQAIDAALRQTGGNVTAAAALLNIGRATLYRKLAK 633 >UniRef50_C9P7H4 Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Vibrio metschnikovii CIP 69.14 RepID=C9P7H4_VIBME Length = 629 Score = 528 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 197/634 (31%), Positives = 321/634 (50%), Gaps = 31/634 (4%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 +G G+ + W++ ++ + + W P +G T + ++ +L Q L Sbjct: 15 TGWLPTKGQ--QTELYQQWQQASQCCQAKAWQPPKNLRGSTLNETLQSQQNLLCFTQRVL 72 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 + E + I + L G Q LS+LG G + IG A+ Sbjct: 73 DAITEKLRAPAWLFCITNAQGITLHLQGTATISQALSSLGLCVGADWTDKRIGNHAIERC 132 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 ++ QA + +H + L W F A P+FD G L ++ L +Q T L + Sbjct: 133 LVTHQAQLSSGAEHLSKALHPWFFSAVPIFDPMGELLASLTLIGETQQHTIMIDALMESA 192 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 ARE+ LL ++ L + N L Q + LLE ++ GV++W G +Q+IN A + L LD + Sbjct: 193 AREIETLLSSEQRLTQANTLLTQRDVLLEGIEQGVVTWQASGYVQYINHCARQWLGLDES 252 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 G I L P V++QA+ + L+ VE + Q Q + +++LKP+ + + Sbjct: 253 H-IGLHIEALFHFPPVVEQALAERTKLEKVEVMVDCQQQLLKVILSLKPLSSGE---VMA 308 Query: 302 LLHPVEQMRQLMTSQLGKVSH--TFAH--MPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 L HP E + Q + + + + P +R +AA+ S PVLL GE+ Sbjct: 309 LFHPSEPLTQPHERHFIGGDYWQPGENLWLLEGHPCQQR----IEKAAKVSVPVLLQGED 364 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRLELAHG 417 GVGK L+ AIH++S++ P + ++C LA+ +G D++ + S+ ELA+ Sbjct: 365 GVGKLSLALAIHHKSQQRLAPLMIIDCAALQPEQLAQALLG----DDQQSQPSKFELAYN 420 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTL LE IEYL LQ++LL ++K G +TRL ++++IP++V+VI+T++ADL LVE F Sbjct: 421 GTLILEHIEYLPPNLQASLLAILKTGFLTRLHSQQVIPVNVRVISTSSADLDKLVESGLF 480 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWP 537 SRQL YA+ E+ IPP R +L+++ + + DAL RL+ +WP Sbjct: 481 SRQLCYAMQGIEVCIPPQREALDYTRSLISHIVHRAN------YTLAADALQRLLDYSWP 534 Query: 538 GNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAII 597 GN EL SV++ + LSS + IR+ DLP+ + + S +EK AII Sbjct: 535 GNRSELLSVMDKVLLSSAHHVIRLCDLPDRIRQR-------TDQAQPIQSLELMEKNAII 587 Query: 598 NAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 +A + G +Q+ + LG+GRTTLWRK++++ ID Sbjct: 588 HALKHHQGHLQQTAKALGVGRTTLWRKIRKYDID 621 >UniRef50_B7HB38 Sensory box sigma-54 dependent DNA-binding response regulator n=75 Tax=Bacillaceae RepID=B7HB38_BACC4 Length = 704 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 107/503 (21%), Positives = 217/503 (43%), Gaps = 42/503 (8%) Query: 149 PLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNAL 208 P+ G + G AI +++ ++ + + L A+ Sbjct: 215 PILKEGGEVQG------------------AFAIFKDITEVVDLAEEVTDLKEIQTLLEAI 256 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT-ELLTLPAVLQQAIKQAHP 267 + S ++ + DE+G IN ++ L G+ T +++ ++ + ++ Sbjct: 257 INSSEEAISVVDEKGRGLVINPAYTKLTGLTEEDIIGKPATTDIVEGESMHMKVLRTRRA 316 Query: 268 LKHVEATFESQHQFIDAVITLKP-IIETQGTSFILLLHPVEQMRQLMTS--------QLG 318 ++ + + + D ++ + P I++ + ++ V ++++L + Sbjct: 317 VRGIHMKIGQKKR--DVIVNVAPVIVDGILKGSVGVIRDVSEIQKLTNELNRARQIIRTL 374 Query: 319 KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGP 378 + ++F + + +T I + A + VLL GE G GK L + AIHN S R Sbjct: 375 EAKYSFDDIVGNSDETTAAIEQAKLGANTPATVLLRGESGTGKELFAHAIHNGSNRKYNK 434 Query: 379 YIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQS 434 ++ VNC + L E G + + + G+ E A+ G++FL++I L+ Q+ Sbjct: 435 FVRVNCAAISETLLESELFGYEEGAFSGAKRGGKRGFFEEANNGSIFLDEIGELSANTQA 494 Query: 435 ALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPP 494 LL+V+++ I ++ + IPI+V+VIA T +L + + +F LYY L+ I IP Sbjct: 495 KLLRVLQEKEIVKVGGTKAIPINVRVIAATHVNLEKAILEGKFREDLYYRLNKIPIQIPS 554 Query: 495 LRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLALS 553 LR R+G IP + + ++ + + + ++ + D A+ L S WPGN EL +++ + Sbjct: 555 LRQRKGDIPTIADRLIQKINQDYGRNVEGLTDSAILYLQSYEWPGNVRELENILGRAIIF 614 Query: 554 S--DNGRIRVSDLP-----EHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGR 606 + I V LP E + ++Q+ E E I + G Sbjct: 615 MNYNETYIDVHHLPPLHNEEQVESKQSHLLPELEEKPLEHLVTEFEGNIIHEYLERFDGN 674 Query: 607 IQEMSALLGIGRTTLWRKMKQHG 629 + + LGI L+ K++++ Sbjct: 675 KTQTAKALGISVRNLYYKLEKYD 697 Score = 86.6 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 16/197 (8%) Query: 150 LFDSKGR--LTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDS-LLAETNRHLNQLN 206 +FD G + + +E+ L + IA+ V L L+ Q Sbjct: 81 IFDMTGEDDVHKVL-----LEKKKKDTLLIPGDIAKIVTGLAHEKEGLIGRLEEQTQQGE 135 Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAH 266 +L S DG+I D +G ++ N A R++ + G+ I E++ + L + I+ Sbjct: 136 LILNSTHDGMIVIDREGQVRLFNKSAERIIGYKKEEAIGKYILEVIP-TSKLLRIIRTKQ 194 Query: 267 PLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQMRQLMTSQ--LGKVSH 322 + E T E+ + + T PI++ G + + ++ L L ++ Sbjct: 195 IEVNYELTLENGKK---IITTRIPILKEGGEVQGAFAIFKDITEVVDLAEEVTDLKEIQT 251 Query: 323 TFAHMPQDDPQTRRLIH 339 + + ++ Sbjct: 252 LLEAIINSSEEAISVVD 268 >UniRef50_B8FD14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FD14_DESAA Length = 470 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 213/469 (45%), Gaps = 30/469 (6%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 + + L A+ +S+ +G + DE+G + N L +D + GR TE + Sbjct: 7 RIEALEKDLEMHRAIFDSIFNGALVTDEKGIITHFNKPYGDFLGVDPESQIGRHCTESV- 65 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI---LLLHPVEQMR 310 + + + + P + + V+ PI + +L V+ + Sbjct: 66 VNSRMHIVARTGKPEINQSHNIIGKK----MVVQRIPIKRGGRVIAVFGQVLFKDVKDLS 121 Query: 311 QLMTSQ----------------LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 +L + L +T + + L +AA + +PVL+C Sbjct: 122 RLASELKVLESKVKLYEAELLNLRSTRYTLNSIIGVSGPIKELKEEALRAAATHYPVLIC 181 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRLS 410 GE G GK L +QAIH+ S R P++ +NC L E G + T + G+ Sbjct: 182 GESGTGKELFAQAIHHASNRKLFPFVRINCAAIPKDLLEAELFGYEKGAFTGARSDGKPG 241 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 + ELAH GTLFL+++ L +E+Q LL+ ++ R+ ++I D+++IA T DL Sbjct: 242 KFELAHQGTLFLDEVGDLPLEMQPKLLRALEDREFERVGGNKIIRSDLRIIAATNQDLDQ 301 Query: 471 LVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTR-LKIDDDALA 529 ++ RF + L+Y L+ I IPPLR R+ I LR L + + +D A A Sbjct: 302 MMADGRFRKDLFYRLNVIPINIPPLRKRKNDIIPSAEYILRQLAAEANLPDISMDKSAQA 361 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFA 589 L + WPGN EL +V+E + + I +SDLP +L ++ + S A Sbjct: 362 ALRNHQWPGNVRELSNVLERTLSALNGRTIGLSDLPFYLHQDRKPLSNGGSS-SLKAVQA 420 Query: 590 EVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQFKRR 638 +E+E+I +A + TG + + LLGI RT L++K+K++ I + RR Sbjct: 421 RIERESICSALEQTGYNKVKAAELLGIHRTLLYKKIKKYAIPLEKEPRR 469 >UniRef50_A1HS80 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HS80_9FIRM Length = 648 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 121/484 (25%), Positives = 214/484 (44%), Gaps = 33/484 (6%) Query: 172 AADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQ 231 + A+ + + + + QL +L + DGVI+ D G + IN Sbjct: 168 RLIMSGAEAVCEAIEEAQRIIKVQDKEKKSAEQLRTILSFIHDGVIAIDNTGKITVINPS 227 Query: 232 AARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPI 291 A + +L T G+ I +++ + +K S V PI Sbjct: 228 AESIFKLKNTQVIGKNIKQVIP-NTKMLDVLKHGKAEIEQLQNTPSG----MVVTNRVPI 282 Query: 292 -IETQGTSFILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQ 343 I + + +++R + SQ ++F ++ DP+ RR+I ++ Sbjct: 283 EINGEIMGVVATFKEAGRIQQTEQKIRTKLYSQGLYAKYSFENIMAWDPEMRRIIERAKR 342 Query: 344 AARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---D 400 AR+ VL+ E G GK L +Q+IH S R GP++A+NC L E G Sbjct: 343 YARTDGTVLIEAESGCGKELFAQSIHQASSRCRGPFVAINCSALPTQLLESELFGYVEGA 402 Query: 401 RTDNEN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVK 459 T G+ +ELAHGGTLFL++I + + LQ+ LL+V+++ + RL A + +P+D++ Sbjct: 403 FTGARKEGKPGLIELAHGGTLFLDEIGDMELTLQARLLRVLEERQVMRLGADKWLPVDIR 462 Query: 460 VIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS- 518 ++A T A L V + +F L++ L+ ++IPPLR RR I L L ++ Sbjct: 463 IVAATNAPLKQRVLRGQFRMDLFHRLNVLNLSIPPLRHRREDIIPLAEYFLAEFANKYGQ 522 Query: 519 TRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHL---------- 568 +++ A L+ +WPGN EL +++E ++L + + + L + L Sbjct: 523 RPIELTAAAKDILLRYSWPGNVRELRNIMERISLVYEEAQDVSAILRDFLGNSDYCNNSD 582 Query: 569 -----FTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWR 623 + V+ R S +++++ I+ GG + + LGI R TL R Sbjct: 583 YSTLELAKTGMLAVTPERFLLPQSIRDMKRQLAISTLAACGGNKSKAAKQLGITRATLDR 642 Query: 624 KMKQ 627 ++Q Sbjct: 643 LLRQ 646 >UniRef50_Q1D2C7 Sigma-54 dependent transcriptional regulator, Fis family n=2 Tax=Myxococcus xanthus RepID=Q1D2C7_MYXXD Length = 737 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 158/681 (23%), Positives = 250/681 (36%), Gaps = 53/681 (7%) Query: 1 MSGAFNNDGRGISPL---IATSWERCNKLMKRETWNVP--HQAQGVTFASIYRRKKAMLT 55 + GA + + G+ P I W+R L T + + R + + Sbjct: 53 LVGALDGE-AGLRPELRSILPRWQRSRSLGAPSTGQPDEGPRVGSLALVERRARLEPVWH 111 Query: 56 LGQAALEDAWEYMAPRECALFILDETACILSRNGDP-QTLQQLSALGFNDGTYCAEGIIG 114 LE P + D IL+ + +G E G Sbjct: 112 ELGGMLEMLSAAPLPSGRVALLADREGVILATRSSGGDFTHHADYVRLVEGACWDETSRG 171 Query: 115 TCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAAD 174 T A+ A AV + H+ Q A P+ D G L + + P Sbjct: 172 TNAIGTALAESSAVAVVGPAHYAQRHHGLVCYAAPVHDPFGELVAVLDVTGPAGAADPLV 231 Query: 175 LPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAAR 234 L ++A L + L + L D V+ + G + NA A Sbjct: 232 LVAVASVAHAAEARLREVAWARVAAAARGGLESRLSREDGPVLVVEPMGRVSRFNAAARA 291 Query: 235 VLR----LDATASQG---RAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVIT 287 +L + A+ G R +T+ A L+ + P + A A+ Sbjct: 292 LLGGQGPMAVEAALGVSWRVLTDAAFRGAALETRLASQGPAWRIHAEAVGTGDASSALAV 351 Query: 288 LKPIIETQGTSFIL----------LLHPVEQ-------MRQLMTSQLGKVSHTFAHMPQD 330 L + + S + + P + R L + +A + + Sbjct: 352 LVRLESSGVRSLGMTPGSADSRPTVAEPSTEGRGPRALSRDLWGADTVVPPGPWAALKGN 411 Query: 331 DPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDA 390 DPQ R + + A +S PVLL E G GK LL++A+H+ S A GP++AVNC A Sbjct: 412 DPQHRATLREAERFAPTSLPVLLLSETGTGKELLARALHSASTVATGPFVAVNCGALSPA 471 Query: 391 ALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVIT 446 L E G T G +L A GGTLFL+++ + LQ LL+V++ G + Sbjct: 472 LLESELFGHAPGAFTGARVGGAEGKLAAADGGTLFLDELAEMPPALQVLLLRVLEDGAYS 531 Query: 447 RLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALV 506 R+ R+ +++ T DL V F LY+ L + +PPLR R +P L Sbjct: 532 RVGESRVRRSRFRLVGATCRDLDAAVRNGTFRSDLYFRLQGAVLRLPPLRER-NDLPELA 590 Query: 507 NNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLALSSDN-GRIRVSDL 564 + LR L + I AL RL + WPGN EL +V+ + + + V L Sbjct: 591 HALLRRLSEEEGLATSSISAAALTRLAAHPWPGNVRELKTVLRLALVRAGGAPVLDVDAL 650 Query: 565 PEHLFTEQATDDVSATRL---------------STSLSFAEVEKEAIINAAQVTGGRIQE 609 P L + + R + E+E AI A ++GG + + Sbjct: 651 PSGLGSPLSPGAQGEPRPAVPPVSSPPSQPSAGAAGGPLRELEARAIQEALALSGGNVAQ 710 Query: 610 MSALLGIGRTTLWRKMKQHGI 630 + LGI R+TL+R ++ GI Sbjct: 711 AARRLGIARSTLYRMAERFGI 731 >UniRef50_B8FIH6 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FIH6_DESAA Length = 558 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 137/578 (23%), Positives = 237/578 (41%), Gaps = 51/578 (8%) Query: 80 ETACI-----LSRNGDPQTLQQLSALGFNDGTYC-AEGII-GTC------ALSLAAISGQ 126 + L+ G +T ++L G G EG++ G A+ A G Sbjct: 4 GDGVVALDKELTVMGCSRTARRLLGRGIRPGVPFPLEGVMKGLSLTQAKDAMHTAITRGA 63 Query: 127 AVKTMADQHFKQVLWNWAF--CATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIARE 184 + Q ++ PL ++ G I + RE Sbjct: 64 PRTGVRGQMIDGEGKRFSCLYSVHPLLGHTAKVIGVI------------------LVFRE 105 Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 V T + L A+ +S+ +GV + D + N A ++ + Sbjct: 106 VKYFADTTEEDNSLASSSSSLGAVFDSLPEGVFTIDTNWRITSFNQAAEQMTGFSRKEAL 165 Query: 245 GRAITELLTLP-----AVLQQAIKQAHPLKHVEATFESQHQ-FIDAVITLKPII--ETQG 296 G+ ++ ++QAI+ + + ++ ++ + + + Q Sbjct: 166 GKQCRDIFRSDLCERGCPMRQAIESGSAKMDQDVRILDKGGAKLNLLVNVSVLRNTDGQL 225 Query: 297 TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + + L + L + F + RRL A S VLL GE Sbjct: 226 VGAVETFRCLTDEYHLPS--LADKTGLFQGIVGQSNVMRRLFQMLPDVAASEASVLLTGE 283 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLE 413 G GK + ++AIH+ S + GP++AVNC ++ + EF G + T + R R E Sbjct: 284 SGTGKEIFARAIHSLSPSSKGPFVAVNCSAIAESLIEAEFFGHEKGSFTGADQSRAGRFE 343 Query: 414 LAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVE 473 +A GGT+FL+++ L E Q LL+V++Q + R+ + IP++ +VI+ T D+ ++E Sbjct: 344 VAKGGTIFLDEVAELRPEHQVKLLRVLEQKMFERVGGTKTIPMEARVISATNLDITAMLE 403 Query: 474 QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLV 532 + F LYY L + +PPLR R IP LV + +R K+ ++ +D L + Sbjct: 404 ERTFREDLYYRLRTVPMHLPPLRERVEDIPLLVQHFIRMFNKKHRKEVRALDPKVLNFFM 463 Query: 533 SCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVE 592 WPGN EL V+E + I + LP T + + + + E Sbjct: 464 EYHWPGNVRELERVMEYAYVFVKGPVIMMKHLP----TIEEFAAKRKSGIPQDIDEEASE 519 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + AI+ A + GG+ QE + LLG+ RT+LWR+MK G+ Sbjct: 520 RRAILRALEKAGGKRQEAANLLGMSRTSLWRRMKSLGM 557 >UniRef50_Q0AVA7 Transcriptional regulator containing PAS AAA-type ATPase and DNA-binding domains-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVA7_SYNWW Length = 696 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 116/494 (23%), Positives = 214/494 (43%), Gaps = 21/494 (4%) Query: 163 LACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQ 222 L + ++ ++ + RE+ T + +L+A+ ES DG+ D Q Sbjct: 203 LPYRNDVVQDGNVIGSVLVLREISEFEELVRQSQYTQKLNRELDAIFESSFDGLYVTDGQ 262 Query: 223 GNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFI 282 +N R+ + A GR + +L+ + A K Sbjct: 263 AITLRLNKGFERITGVTAAECVGRHMADLVKEGKFSRSGTLLALEKKERVTISLVAATGN 322 Query: 283 DAVITLKPIIETQGTSFILL--LHPVEQMR-------------QLMTSQLGKVS-HTFAH 326 + ++T PI + +G +++ + + ++ QL SQL ++ T Sbjct: 323 EVLVTSNPIFDEEGNIILVVTNVRDITELNELQRKLEQVEGLTQLYRSQLEQIKLQTSRQ 382 Query: 327 MPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCEL 386 + + + + L+ + +L+ GE GVGK L+++ IH+ S R GP I VNC Sbjct: 383 LVFNSTKMKELLDLVLRVTGVDSTILIQGESGVGKELIAEIIHSSSNRKDGPLIKVNCGA 442 Query: 387 YGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQ 442 + L E G + T ++G++ ELA GG LFL++I L + LQ LL+ ++ Sbjct: 443 IPENLLESELFGYEAGAFTGASKSGKIGLFELAQGGILFLDEIGELPLNLQVKLLRFLQD 502 Query: 443 GVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSI 502 I R+ + I +DV+++A T +L ++ ++F LYY L+ I +PPLR R + Sbjct: 503 KEILRVGGEQPIIVDVRILAGTNRNLVEMIANHQFRLDLYYRLNVIPIFVPPLRERPEDV 562 Query: 503 PALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVS 562 P L N L ++ ++ + L+ WPGN EL +++E + ++S N I + Sbjct: 563 PVLANYFLNVFNNKYQMNKRLHKSVIDVLMEYHWPGNVRELENLMERMVVTSINNIISMQ 622 Query: 563 DLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLW 622 DLP + D L + E+E + A +++ L + ++T+ Sbjct: 623 DLPASFKVPRLKLDSEQDLLPLRQAVENTERELLEAAFARFRSS-YQVATALQVNQSTVI 681 Query: 623 RKMKQHGIDAGQFK 636 RK ++GI + Sbjct: 682 RKAAKYGIKRQDGR 695 Score = 70.5 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 85/246 (34%), Gaps = 40/246 (16%) Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIA-------LACPVEQTTAAD 174 + + +T+ + ++ +++ A+P+ + L G I L+ + D Sbjct: 11 LLPLRPRQTIGE--VSRLFIDFSLDASPVLNEDQELVGLITKNRLLQVLSQESPEIEVQD 68 Query: 175 LPLTLAI-------AREVGNLLLTDSLLAETNRHLNQLN--------------------A 207 + LT I ++ T + + + L A Sbjct: 69 IMLTNPITIAFDDDVPDIRKQKFTCRPVMRNGQLVGMLYFSDILVALALEIEKGKEEIEA 128 Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 ++++ + VI D ++ N QA+R+L +D ++G + +LL VL I H Sbjct: 129 AIDAVYNPVIEIDNDFRIKIFNRQASRLLGIDIEEARGANVHDLLGGTEVLDSLIHGNHK 188 Query: 268 LKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMT--SQLGKVSHTFA 325 V F+ + + + +L+L + + +L+ K++ Sbjct: 189 PLPVNKLVIGDRSFLPYRNDV--VQDGNVIGSVLVLREISEFEELVRQSQYTQKLNRELD 246 Query: 326 HMPQDD 331 + + Sbjct: 247 AIFESS 252 >UniRef50_A4J1E1 Transcriptional regulator n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J1E1_DESRM Length = 468 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 122/468 (26%), Positives = 212/468 (45%), Gaps = 33/468 (7%) Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + E + L+++ +G I ++ G + FI+ + L + G+ ITE+ Sbjct: 5 KRIEREFRENPVLAGVLIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEV 64 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL--------- 302 L Q ++ P+ + + + + ++ PI+ G + Sbjct: 65 -HENTKLTQVLETGKPISYDYW----ETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIP 119 Query: 303 --------LHPVEQMRQLMTSQLGK---VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPV 351 L +E+ + +L K +TF M + +++ ++ A S V Sbjct: 120 SGKTLANKLKQLEKEVEFYRQELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTV 179 Query: 352 LLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDN-----EN 406 L+ GE G GK L +QAIHN S R+ P++ +NC + L E G + Sbjct: 180 LITGESGTGKELFAQAIHNASYRSRFPFVRINCAAVPENLLEAELFGYAE-GAFTGAKKG 238 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ + ELA GGT+FL++I L + +QS LL V+++ I R+ R + +D +VIA T Sbjct: 239 GKPGKFELAQGGTIFLDEIGELPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNR 298 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDD 525 +L +V++ F LYY L+ + IP LR R+ IP LVN L + + + + Sbjct: 299 NLEDMVKEGTFRDDLYYRLNVISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTE 358 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 +A+ L WPGN EL + +E + + SD+ I V+ LP + + + + RL+ Sbjct: 359 EAMLVLSKHYWPGNIRELQNTLERVFILSDDNIISVNHLPFSIKMR-KGNIIQSKRLTLD 417 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 + EK I++ + LLGI ++L+RKMK+HGI Sbjct: 418 EMIDQTEKRIILDTLSNVKDDRIAAAELLGIHLSSLYRKMKKHGIKKS 465 >UniRef50_Q5WKW0 Transcriptional regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKW0_BACSK Length = 451 Score = 526 bits (1357), Expect = e-148, Method: Composition-based stats. Identities = 128/453 (28%), Positives = 209/453 (46%), Gaps = 33/453 (7%) Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQA 265 +A+L+++ DG++ D+QG ++ IN + R+ + A G+ + E+ ++ Sbjct: 4 HAILDAIQDGILVIDKQGIVKKINNEYTRITGVCAQDIIGKPLLEVRPEAQLVSTL---- 59 Query: 266 HPLKHVEATFESQHQFIDAVITLKPIIET-QGTSFILLLHPVEQMRQLMT---------- 314 K V + + ++ + PI + Q + + +++ L Sbjct: 60 -KDKSVRVGVYRKVNGREYLVDMAPIFDGDQVVGAVSICKGKQEVLDLTKTIEQQKQQIQ 118 Query: 315 ------SQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAI 368 + +H F + + + + R+AA + FPVL+ GE G GK L +QAI Sbjct: 119 WLQQKVEASFQAAHHFESIIGYNQGLKEVTAIARKAATAPFPVLITGESGTGKELFAQAI 178 Query: 369 HNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEK 424 H + A+ P++ +NC L E G + T +NG+L ELA GTLFL++ Sbjct: 179 HRGGKNASQPFVPINCAAIPTDLLESELFGYETGAFTGAQKNGKLGLFELADNGTLFLDE 238 Query: 425 IEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYA 484 I L + LQS LL+V+++G I RL A + + ++IA T +LA LV + F LYY Sbjct: 239 IGELPLSLQSKLLRVLQEGTIRRLGALKEKRVCTRIIAATNQNLADLVSKGLFREDLYYR 298 Query: 485 LHAFEITIPPLRMRRGSIPALVNNKLRSLE-KRFSTRLKIDDDALARLVSCAWPGNDFEL 543 L F++ IPPLR R+ IP L L S + ++ I D+AL RL WPGN EL Sbjct: 299 LCVFQLHIPPLRERKEDIPLLAKTLLASQSDAKAVGQVNISDEALERLKHYHWPGNVREL 358 Query: 544 YSVIENLALSSDNGRIRVSDLPEHLFTEQ---ATDDVSATRLSTSLSFAEVEKEAIINAA 600 + ++ D + S LP HL T+Q +T S E E++ I N Sbjct: 359 KNALQFALCMMDEPVLHPSHLPPHLATDQWQRSTPMSFTPPTSLKAGLEEAERQLITNVL 418 Query: 601 QVTGGR---IQEMSALLGIGRTTLWRKMKQHGI 630 ++ + L I TL+ KMK+H + Sbjct: 419 ANCDNHLEGKKQAAKRLNISLATLYNKMKKHRL 451 >UniRef50_A5D511 Transcriptional regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D511_PELTS Length = 478 Score = 526 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 110/474 (23%), Positives = 220/474 (46%), Gaps = 42/474 (8%) Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA 256 ++ ++ L +L+S + + D + + ++N L + +QG+ + +++ Sbjct: 8 SSDEMVDFLIKVLDSDPECFVFVDSEARVIWLNKAYQSYLNVKLEEAQGKPVVDVIP-NT 66 Query: 257 VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFI---LLLHPVEQMRQLM 313 LQ +K P + A++ P+ + +L ++ +L+ Sbjct: 67 RLQVVVKTGIPELGKVQNINGRR----AIVNRIPLFKDGKIIVAIGKVLFKTKKEFAELV 122 Query: 314 TS-------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVG 360 + ++ F + P + ++ A V++ GE G G Sbjct: 123 SKLKEEVDCYKRELNEIYTSKWKFEDIITCSPNLIHVKDLAQKVAPVDVNVMILGESGSG 182 Query: 361 KALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAH 416 K LL+ +IH+ S R++ P++ +NC + + E G + T+ + NG+L +LE+A+ Sbjct: 183 KELLAHSIHSASTRSSKPFVCINCAAIPENIMESELFGYEPGAFTNAKSNGKLGKLEIAN 242 Query: 417 GGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNR 476 GT+FL++I + +Q+ LL+ +++G + ++ + + + ++V+VI T ++ +VE Sbjct: 243 NGTVFLDEIGDMPPFMQAKLLRFLQEGELEKVGSVKPVSVNVRVICATNRNIQKMVEDGI 302 Query: 477 FSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCA 535 F LYY L + + IPPLR R I L ++ L+S+ ++++ L KID +AL L + Sbjct: 303 FRADLYYRLSSIILKIPPLRERPEDIELLCDHFLKSITEKWAIPLKKIDKEALEILKNYY 362 Query: 536 WPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST----------- 584 WPGN EL ++E L +D I+ LP +LF + + + L Sbjct: 363 WPGNVRELQHLLETLCCITDGNIIKAKALPSYLFGQSDSAMLKNNELRRISLSNINSDGN 422 Query: 585 -----SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAG 633 S EKE + + TGG ++ + +LGI RTTL+ K++++ + Sbjct: 423 NKYICSDVINSKEKELLEEVLRNTGGNKRKAAEMLGIHRTTLYYKLRKYNMQYK 476 >UniRef50_B7HA57 Sensory box sigma-54 dependent DNA-binding response regulator n=58 Tax=Bacillus cereus group RepID=B7HA57_BACC4 Length = 553 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 114/476 (23%), Positives = 202/476 (42%), Gaps = 31/476 (6%) Query: 185 VGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQ 244 + + + L N + + ++++ D V D + ++ A ++ ++ Sbjct: 80 ITSQQMIPFLYKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEII 139 Query: 245 GRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLL 303 G+ IT + ++ H K + A F + +I P+ + ++ Sbjct: 140 GQPITRFFDYKD--LEILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSE 197 Query: 304 HPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 V L + S F M P +R I R+ Sbjct: 198 TDVTNQVALNEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSV 257 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN 404 VL+ GE GVGK + ++AIH SE A P+I++NC +A E G + + Sbjct: 258 KSTVLILGESGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGA 317 Query: 405 E-NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 G+ ++ELA GGTLFL++I + +++Q LL+V+++ R+ + I ID ++IA Sbjct: 318 NSKGKKGKIELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAA 377 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T DL + + F LYY L+ + IPPLR RR I L + L ++ ++ Sbjct: 378 TNRDLQEEMRKGTFREDLYYRLNVVSLQIPPLRERREDIIELTYSFLNDFSINYNRPIRD 437 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-------EHLFTEQATD 575 + + L+ WPGN EL +V+E L + + +G I+ LP ++ Sbjct: 438 LPSSIMHELLHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLL 497 Query: 576 DVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + T LS E EK+ I A ++ G E + LG+ R TL+ ++K+ + Sbjct: 498 SNNNTILSLQEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLRLQ 553 >UniRef50_C1PD04 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Bacillus RepID=C1PD04_BACCO Length = 950 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 133/586 (22%), Positives = 231/586 (39%), Gaps = 45/586 (7%) Query: 60 ALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALS 119 E+ + + + + ++ +A+ G+ G Sbjct: 399 FFENLAKLFPFSFYLISL---SGYLIKSF----FSSSETAISLPLGSKWKLEDAGENGFG 451 Query: 120 LAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTL 179 A H L N+ P+ G + +A A Sbjct: 452 RALKRNDLSVVTGRHHTHACLKNFTTAGIPIKIFH-ETAGVLGIAG-----NAGSQADVE 505 Query: 180 AIAREVGNLLLTDSLLAETNRHLNQLNALL-ESM----DDGVISWDEQGNLQFINAQAAR 234 AR++ + S L + L +L E+M +G+I + F N QA + Sbjct: 506 LAARQIALHIDLFSKLVTERKKSRLLEHILQETMVKRRPEGMIVLYRNS-IVFANEQAEQ 564 Query: 235 VLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 ++ D +++ L + + + +I +K + Sbjct: 565 IVN-DQPLLINALASDIAELGSRPVPEKHLRKRIGDDAYEIRMRKWEDYFLIYVKQGDKK 623 Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 +G S +F ++ + +H AA++ VL+ Sbjct: 624 EGDS------------------KPAAKTSFQNIIGKEHAFLDAVHIAETAAKTDANVLII 665 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLS- 410 GE G GK L + AIH+ES R P+IA+NC + EF G T ++ G Sbjct: 666 GESGTGKELFANAIHHESLRKDKPFIAINCGAVPKDLIHSEFFGYSEGAFTGSKKGGKKG 725 Query: 411 RLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAM 470 E A+GGT+FL++I + ++LQ LL+V+++ ITR+ + +P+DV++IA T +L Sbjct: 726 LFEEANGGTVFLDEIGEMPLDLQVTLLRVLQEREITRIGEHKPVPVDVRIIAATNKNLRD 785 Query: 471 LVE-QNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 + F LYY L+ F+I +PPLR R G I L L L ++ TR + DA+ Sbjct: 786 EIAYNGSFRSDLYYRLNVFQIELPPLRKRPGDIQELSEYFLSQLNRKNGTRKEFAADAVQ 845 Query: 530 RLVSCAWPGNDFELYSVIENLALSSD-NGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 L WPGN EL ++IE S + I L +L + + Sbjct: 846 ILKQYEWPGNIRELENIIERSYYLSGFHSVILPEFLDPYLLNTYKHTQQQDQMIEGKET- 904 Query: 589 AEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 E EK+ ++ + TG I ++S +LG+ RTT+++K++Q+GI + Sbjct: 905 EEPEKQHLLALLEETGFNISKISRILGVSRTTVYKKLQQYGIKLKR 950 >UniRef50_A7GG75 Sensory box sigma-54 dependent transcriptional regulator n=10 Tax=Clostridium RepID=A7GG75_CLOBL Length = 584 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 107/506 (21%), Positives = 229/506 (45%), Gaps = 40/506 (7%) Query: 160 TIALACPVEQTTAADLPLTLAIARE-------VGNLLLTDSLLAETNRHLNQLNA----L 208 I ++ +A ++ + I R + ++ D L E ++ +L A + Sbjct: 83 VITISEEKSIISARNIMVKNKIERLPIVHNRKIIGIVHLDDLNNELYTNVEELYALQDRI 142 Query: 209 LESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPL 268 LE+M + V + +G + + N + + + G+ + A++ + +K + Sbjct: 143 LENMHEAVCITNNKGVVIYWNKSSEDLYGVKRQEIIGKYLGSFFP-NALILKVLKNPRKI 201 Query: 269 KHVEATFESQHQFIDAVITLKPIIETQGTSFILLL--HPVEQMRQLMTSQLGKVS----- 321 +V +++ PI ++ + + ++ L + + Sbjct: 202 TNVN---NEPSPGKTVILSAVPIFNSKNKLIAVASTDRDITEVISLSKELMQEKKKVEFF 258 Query: 322 -----------HTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 ++F+ + + I ++ A +S VL+ GE G GK + ++AIH Sbjct: 259 ESAYKKEIASNYSFSSIIGKSQKIIENIAIAKKVAPTSASVLITGESGTGKEVFAKAIHK 318 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIE 426 S R G ++A+NC + E G T + + G++ + E A+ GTLFL++I Sbjct: 319 ASGR-TGNFVAINCSAIPENLFESELFGYVGGTFTGSLKEGKIGKFEFANNGTLFLDEIG 377 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + +Q+ LL+V++ GV+ R+ +++ ++ +++A T DL ++++N F L+Y Sbjct: 378 DMPLSMQAKLLRVLQDGVVYRIGSQKGTKVNCRILAATNRDLQSMIKENTFREDLFYRFA 437 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYS 545 I +PPLR RR I ++ + + ++ ++ ID + L S W GN +L + Sbjct: 438 VVHIELPPLRERRDDIKDFIDLFINQISEKEGIKINTIDKEVYDILCSYKWEGNIRQLKN 497 Query: 546 VIENLALSSDNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINAAQVTG 604 V+E + + S NG + +S +P H+ + + + S R + EK+ I ++T Sbjct: 498 VVERMVVLSTNGEVTISSVPNHIVQDVEEIEGESHHRYDLNEVVKNTEKKIIKEVMEITK 557 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGI 630 G ++ + +L I R+TL+ K+ Q+ + Sbjct: 558 GNKKKAAEILNIKRSTLYYKLNQYDL 583 >UniRef50_A4IPF8 Transcriptional regulator n=6 Tax=Bacillales RepID=A4IPF8_GEOTN Length = 571 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 113/467 (24%), Positives = 206/467 (44%), Gaps = 40/467 (8%) Query: 198 TNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAV 257 T+R + +L++ +GV+ D G ++ IN + L + + G+ +TE++ Sbjct: 109 THRLAETMKTVLDAAYEGVVVVDGNGMVREINRAYCQFLGIRREDAIGKHVTEVIE-NTR 167 Query: 258 LQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFI------------LLLH 304 L ++ P + Q V+ PI + + + + Sbjct: 168 LHICVQSGIPERGYIQKIYGQ----PMVVHRIPIWRDGKVIGAVGMLIFQGVSEVYAIFQ 223 Query: 305 PVEQMRQLMTSQLGK------------VSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVL 352 ++++ + + + + + P + R+AAR VL Sbjct: 224 RLQELSREASRKEKNEAEASKQEAVASAAVGVERIIGRHPTIAAVKQMIRRAARVPSTVL 283 Query: 353 LCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRL 409 + GE G GK ++++AIH A GP+++VNC +A L E G + T + G Sbjct: 284 ITGESGTGKEVVARAIHEAGAHADGPFVSVNCAAIPEALLEAELFGYEDGAFTGAKKGGK 343 Query: 410 SR-LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADL 468 +LAHGGTLFL++I + + +Q+ +L+V+++ + ++ +DV++IA T L Sbjct: 344 PGKFQLAHGGTLFLDEIGDMPLAMQAKILRVLEEKKVEKVGGLSETEVDVRIIAATNKPL 403 Query: 469 AMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFS-TRLKIDDDA 527 +V F L+Y L+ I +PPLR R+ IPAL+ + + L ++F +A Sbjct: 404 EEMVRDGTFREDLFYRLNIIRIHLPPLRERKTDIPALLAHHMERLCRQFGVVSKSFAKEA 463 Query: 528 LARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST--- 584 + L++ +WPGN EL +V+E L + I LP +L T + + Sbjct: 464 MEVLINYSWPGNIRELVNVVEWLISMVEGENIEREHLPAYLSTIHPSVTPMPDGGANIAD 523 Query: 585 --SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHG 629 + E+E I A G E + LGI R+TL+ K+K++G Sbjct: 524 QWKEIVYQSERERIAAALVAANGNKAEAARRLGIHRSTLYEKLKKYG 570 >UniRef50_Q81CD5 Sigma-54-dependent transcriptional activator n=3 Tax=Bacillaceae RepID=Q81CD5_BACCR Length = 469 Score = 524 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 115/467 (24%), Positives = 200/467 (42%), Gaps = 31/467 (6%) Query: 194 LLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLT 253 L N + + ++++ D V D + ++ A ++ ++ G+ IT Sbjct: 5 LYKSYNELQSFYDTVIQTTDSSVTVIDSKEYVRTWTDGAEKIFSVNHNEIIGQPITRFFD 64 Query: 254 LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQL 312 + ++ H K + A F + +I P+ + ++ V L Sbjct: 65 YKD--LEILQSLHDGKSIVAQFHQPRPDLFVLINSNPVYCNDEIIGAVVSETDVTNQVAL 122 Query: 313 MTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGE 356 + S F M P +R I R+ VL+ GE Sbjct: 123 NEKLFNMSHEMHRLEQEVAKYKDESDPFLAMNGKSPVIQRTIQLARKVCSVKSTVLILGE 182 Query: 357 EGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRL 412 GVGK + ++AIH SE A P+I++NC +A E G + + G+ ++ Sbjct: 183 SGVGKEVFAKAIHEASEAAKAPFISINCGAIPEALFESELFGYERGAFSGANSKGKKGKI 242 Query: 413 ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLV 472 ELA GGTLFL++I + +++Q LL+V+++ R+ + I ID ++IA T DL + Sbjct: 243 ELAQGGTLFLDEIGEMPLDMQVKLLRVLQERKYYRVGGEKEINIDFRIIAATNRDLQEEM 302 Query: 473 EQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARL 531 + F LYY L+ + IPPLR RR I L + L ++ ++ + + L Sbjct: 303 RKGTFREDLYYRLNVVSLHIPPLRERREDIIELTYSFLNDFSINYNRPIRDLPSSIMHEL 362 Query: 532 VSCAWPGNDFELYSVIENLALSSDNGRIRVSDLP-------EHLFTEQATDDVSATRLST 584 + WPGN EL +V+E L + + +G I+ LP ++ + T LS Sbjct: 363 LHYNWPGNIRELRNVVERLVVFATDGIIKQEYLPFHTTETLDNHTAHSLLLSNNNTILSL 422 Query: 585 SLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 E EK+ I A ++ G E + LG+ R TL+ ++K+ G+ Sbjct: 423 QEEMDEHEKKVIERALRILNGNKLECAKQLGVTRATLYNRLKKLGLQ 469 >UniRef50_Q7WAQ0 Putative sigma-54-dependent transcriptional regulator n=3 Tax=Bordetella RepID=Q7WAQ0_BORPA Length = 622 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 147/650 (22%), Positives = 245/650 (37%), Gaps = 63/650 (9%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFASIYRRKKAMLTLGQAAL 61 SG + +P I SWERC P + + +L Q + Sbjct: 9 SGQHLPSTQAAAP-IVRSWERCASATADLHD-DPVALRHGDLQERLEQHACVLRAAQPEI 66 Query: 62 EDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTCALSLA 121 E +A + + D + IL +G+ LQ+ + G AE GT A+ A Sbjct: 67 ETLAGMVASASSLVLLADASGVILQASGNTGFLQRADHMALRPGVSWAENHRGTNAIGTA 126 Query: 122 AISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAI 181 I A++ +HF + + A P+ +G + G + ++ + A L L Sbjct: 127 LIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRGDILGVLDISGDAGRMHAYALSLASMC 186 Query: 182 AREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDAT 241 AR+V N ++ + ++ +LL+S++ G++ E + N A +L Sbjct: 187 ARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLLLI-EDERIVGANDAAVALLGATWP 245 Query: 242 ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFIL 301 A + + L A + + + QG F Sbjct: 246 ALLDQPLD----------------GWLVDWRAVARTPGR----------VHTPQGAPFHA 279 Query: 302 LLHPVEQMRQLMTSQLGKVSHTF----AHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEE 357 +L R L + +P P + R+A VLL GE Sbjct: 280 VLRQGGHARSLPAPPRPPRAVPAQAPEETLPALAPALQAGFERARRALDGGLSVLLQGET 339 Query: 358 GVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGDRTDNENGRLSRL----- 412 G GK + +Q ++ S GP++AVNC ++ + E G + Sbjct: 340 GAGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYE--------PGAYTGARR 391 Query: 413 -------ELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 A GG LFL++I + + LQ+ LL+ +++ ++ L A + +P++ +++ T Sbjct: 392 LGARGRLREADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATH 451 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDD 525 DL ++ F LYY LH + + +P LR R + + LR+L L + D Sbjct: 452 RDLDAMIAAGEFRADLYYRLHDYAVPLPRLRER-DDLRPFICAALRAL-DDTPAGLTLAD 509 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSS-DNGRIRVSDLP-------EHLFTEQATDDV 577 DAL L + AWPGN +L SV+ LAL I LP H A Sbjct: 510 DALDALAAYAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHAADGAAPRPG 569 Query: 578 SATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 A + S + I A GG I + LGI R+TL+R + + Sbjct: 570 VAAPPAAPASLRDASLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLAR 619 >UniRef50_Q3ABV5 Sigma-54 dependent transcriptional regulator n=3 Tax=Bacteria RepID=Q3ABV5_CARHZ Length = 732 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 106/330 (32%), Positives = 169/330 (51%), Gaps = 5/330 (1%) Query: 308 QMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQA 367 + + + + + + + +AA S VL+ GE GVGK + ++ Sbjct: 403 EFYRNKYEMENRKKYYLDGITGQTEKIIEVKKLIEKAAMSDGNVLIQGESGVGKEIAART 462 Query: 368 IHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNE-NGRLSRLELAHGGTLFLE 423 IH SERA P++A+NC + L E G + T + G+ ++E A GGTLFL+ Sbjct: 463 IHYLSERADKPFVAINCAAIPENLLESELFGYEEGAFTGAKRGGKAGKIEQADGGTLFLD 522 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 +I + + +Q LL+ I+ R+ + +D+++IA T LA LV++ RF LYY Sbjct: 523 EIGDMPLSMQVKLLRFIQNREFERIGSNTPRKVDIRIIAATNQPLAKLVKEGRFRMDLYY 582 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKI-DDDALARLVSCAWPGNDFE 542 L+ F I IPPLR RR IP LVN + +R KI +A+ L++ +WPGN E Sbjct: 583 RLNVFNINIPPLRERRDDIPLLVNRFMNEFCERRKMAPKIVTSEAMNILMNYSWPGNIRE 642 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQV 602 L +VIE ++ I+ LP L ++ + + + + AEVEK+ II + Sbjct: 643 LQNVIERAYYLAEGNLIKPEHLPAQLTSKALSGERITKITTFKEAVAEVEKKLIIEGLKA 702 Query: 603 TGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 T + LLGI R TL++K+K++GI+A Sbjct: 703 TNYNKLACAKLLGIPRATLYQKIKEYGIEA 732 >UniRef50_C7LR14 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LR14_DESBD Length = 476 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 104/455 (22%), Positives = 194/455 (42%), Gaps = 26/455 (5%) Query: 201 HLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQ- 259 + +++ M +G++ D G+++ +N + G L A + Sbjct: 23 LETHWHEIVDIMQEGLLLVDPDGSIKMVNRALEEITGYTRDELIGANC-SLFKCDACRRV 81 Query: 260 ---------QAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQG--TSFILLLHPVEQ 308 + +Q ++ + ++ + + + G + + + + Sbjct: 82 RSEARQAWCKLFEQGVYVRRKCSIMRKDGTYVPILKSASILHAEDGSTVGAVETMTDLSE 141 Query: 309 MRQLMTS-----QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKAL 363 + + ++ F M Q RR+ H +AA+S PV + GE G GK L Sbjct: 142 LDRKENELQQLSRMLDEETMFHGMVGHSAQMRRVFHLIEKAAQSDAPVFIYGESGTGKEL 201 Query: 364 LSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSRLELAHGGTL 420 +++AIH+ R+ PY+ NC +A L E G T R R E AHGG + Sbjct: 202 VARAIHDLGPRSDQPYVQFNCAALNEALLESELFGHVKGAFTGAFRHRQGRFEAAHGGDI 261 Query: 421 FLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQ 480 FL++I L + +Q LL+V++ R+ R + +DV++I T L L+ Q +F Sbjct: 262 FLDEIGDLPMPVQVKLLRVLETKTFERVGDNRQLSVDVRIITATNKVLPELISQGQFRED 321 Query: 481 LYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGN 539 L+Y ++ + +P LR R+ IP L + ++ L + +K + L + +WPGN Sbjct: 322 LFYRINVIPVHLPSLRERKEDIPLLADYFIQRLRMKSDKDIKGLSPQTLRLFMDYSWPGN 381 Query: 540 DFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINA 599 EL S +E + +D+G I LP ++ + +++ ++ A Sbjct: 382 VRELKSSLEYAFVLADHGHIEPEHLPHNVV----VTAPPVAEPRYGNPGHDSQRQQLVQA 437 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDAGQ 634 GG E + +LGI R T+ +M++HGID + Sbjct: 438 LHQAGGNKSEAARILGINRVTVLNRMRKHGIDMTR 472 >UniRef50_A6TL57 Sigma54 specific transcriptional regulator, Fis family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TL57_ALKMQ Length = 580 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 204/465 (43%), Gaps = 37/465 (7%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 + + S+ D V+ D ++ IN + + +G+ + + A + A+ Sbjct: 121 FFDYFINSISDAVLICDHDSIVKKINKAYTHLTGVSPNGIEGKKVNSV-RKGAQISHAVN 179 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPI-IETQGTSFILLLHPVEQMRQLMTSQ------ 316 +K+ Q + + L P+ + + ++L + +++ L Sbjct: 180 TGVAMKN----IYRQEGDREYFVDLYPVSVGGKILGGVVLAKDITEIQHLTKKVNQWKTQ 235 Query: 317 ----------LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 K + TF + P + I G++ A S +L+ GE G GK + SQ Sbjct: 236 FSKLKSSVASHHKAAKTFDDIIAKSPAMKSCITLGKKVANSDTNILIRGESGTGKDIFSQ 295 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFL 422 AIHN S R P++A+NC + E G + T + G++ ELA+ GTLFL Sbjct: 296 AIHNYSYRKNHPFVAINCASISPTLILSELFGYEDGAFTGASKGGKIGLFELANKGTLFL 355 Query: 423 EKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLY 482 ++I + ++LQS LL+ ++ G ITR+ I ++V+VIA T DL + +N F LY Sbjct: 356 DEIGDMDLDLQSKLLRALENGAITRVGGSTTIKVNVRVIAATNVDLEEKIRKNEFRSDLY 415 Query: 483 YALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFE 542 + L+ I +PPLR R+ IP LV L L RL I + + L WPGN E Sbjct: 416 FRLNIIPIRLPPLRDRKEEIPYLVEALLVGLSASLHKRLIITPETVTSLKHYHWPGNIRE 475 Query: 543 LYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL--------STSLSFAEVEKE 594 L +V+ A D I + LP+ + V S +E+EK+ Sbjct: 476 LQNVLVFAATMIDEDVITIDCLPKKIKERILDHAVPPQPPHEPRSFITPLRESQSELEKD 535 Query: 595 AIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGIDAGQFK 636 I G ++++ LLGI TL+ K+ Q+GI+ +F+ Sbjct: 536 KISKGLLEYGATVQGKKKVAQLLGISLATLYNKINQYGINKKRFR 580 >UniRef50_Q3A203 Two component signal transduction response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A203_PELCD Length = 575 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 108/465 (23%), Positives = 204/465 (43%), Gaps = 24/465 (5%) Query: 178 TLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLR 237 L +AR + L + L A+ ES+ DG++S D G + N A+R+ Sbjct: 116 LLQVAR---SALKYKQAIDREANTRTNLAAIFESVKDGLLSVDASGCVTDFNQAASRLCG 172 Query: 238 LDATASQGRAITELL-----TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-ITLKPI 291 +G I L T +L + +++ ++ E + V ++ P+ Sbjct: 173 WSKDD-RGEKIDALSMPCAGTCRDLLTRTLEEGKSMELKRMECEHLERAGQVVSLSTSPL 231 Query: 292 IETQGT--SFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 +G ++++ ++ L + +F M + +++ A+ Sbjct: 232 QNKEGDVFGAVMVVRDETRLDDL--ERSLNKRQSFHRMIATSSKMQQVFGLIETLAQVPS 289 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNEN 406 VL+ GE G GK L+++A+H R P + VNC D L E G T Sbjct: 290 TVLILGESGTGKELVAEALHLSGPRKNRPLVKVNCAALSDTLLESELFGHVKGSFTGAVK 349 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 + R + A GGT+FL++I ++ +Q LL+V+++ + R+ + +DV+++A T Sbjct: 350 DHVGRFQKADGGTIFLDEIGDISPRMQLRLLRVLQEKEVERIGDSTPVKVDVRIVAATNQ 409 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDD 525 DL V F + LYY L + +PPLR R+ IP +V++ ++ + L+ +D Sbjct: 410 DLEEKVRSGEFRQDLYYRLKVITLALPPLRERKEDIPPMVDHFIQRYNEVLGRNLQGVDQ 469 Query: 526 DALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS 585 + + + + WPGN +L IE++ + ++ +PE + + Sbjct: 470 EVMRAMQAYDWPGNVRQLEHAIEHILIHCTEPLASLAHVPEEILQGEQAVGKYCADS--- 526 Query: 586 LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 E E++ I+ A T + + LLGI R TL+RK+++ G+ Sbjct: 527 ---EEQEQQQILAALDKTDWNKAKAARLLGIDRKTLYRKIEKFGL 568 >UniRef50_B8FJT8 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=B8FJT8_DESAA Length = 464 Score = 523 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 171/353 (48%), Gaps = 11/353 (3%) Query: 289 KPIIETQGTSFILLLHPVEQMRQL--MTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAAR 346 KP+ + + +++ + + + K + F + D PQ +R+ + A Sbjct: 108 KPVKFDELLHSVSTAIKFKRLERENTILKKQLKKKYRFENFVGDSPQIQRVFELIEKVAD 167 Query: 347 SSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTD 403 + VL+ GE G GK L+++AIH S R P + +NC + L E G + T Sbjct: 168 TDSTVLITGESGTGKELIARAIHYNSPRRDDPMVIINCGAIPEELLESELFGHEKGAFTG 227 Query: 404 NENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 R+ R E+A+GGT+FL++I ++ LQ LL+VI++ R+ + R + +D++++A Sbjct: 228 AHKTRIGRFEVANGGTIFLDEIGDMSPNLQVKLLRVIQEQAFERIGSTRTMHVDIRILAA 287 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-K 522 T DL VE+ F LYY L+ I +PPLR R+ IP L++ + L + + Sbjct: 288 TNKDLMEAVEKKEFREDLYYRLNVIPIEVPPLRDRKSDIPLLIDFFINKLAAEKERPVKR 347 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL 582 I A+ L+ WPGN EL +V+E + + S I DLP + + + + +L Sbjct: 348 ISQAAMNALMGHHWPGNVRELENVVERVLILSSGDTIDKEDLPATILGLDSKEPEAGLKL 407 Query: 583 STS-----LSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + E EK I+ A + + + LL I RTTL KMK+ I Sbjct: 408 PSGGIRFDHAVEEYEKNLIVQALEEANWVKTQAAKLLHINRTTLVEKMKRKNI 460 >UniRef50_B2A7X5 Putative sigma54 specific transcriptional regulator n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7X5_NATTJ Length = 594 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 115/519 (22%), Positives = 221/519 (42%), Gaps = 47/519 (9%) Query: 151 FDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLE 210 F LTG A L + + D+ ++ L +L Sbjct: 85 FKDHEDLTGVRDNMRFHGIKRAPVLNENEECLGLITVKSICDAFSNRLWHVVDYLQMVLN 144 Query: 211 SMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKH 270 ++++GV G + + N A +L + S T P + ++ +++ Sbjct: 145 NLNEGVFILSSDGEVLYQNNALAGILATQSAQS---------TQPEIPRELLQKIQSGSG 195 Query: 271 VEATFESQHQFIDAVITLKPIIETQGTSFILL--LHPVEQMRQLMTS------------- 315 + + ++ + P E++ + + + + ++++ ++ Sbjct: 196 GDFVYHLNNKVYSVNVAPFPCNESEENKLVTIKNVTHITELQEQLSRANSKLNYLENTVS 255 Query: 316 QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERA 375 ++ + +TF ++ P+ +I +Q A + VL+ GE G GK LL+ AIH S+R Sbjct: 256 KISQEHYTFGNIFSVSPKMEHVIELAKQVAPTKATVLINGESGTGKELLANAIHQHSDRK 315 Query: 376 AGPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVE 431 P I +NC + EF G T + G+ E+A GGTLFL++I L + Sbjct: 316 DAPLITINCGAIPENLAESEFFGYCSGAFTGAKKEGKPGAFEIADGGTLFLDEIGDLPLN 375 Query: 432 LQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEIT 491 +Q+ LL+ +++G R+ + +DV++IA T +L LV+ N+F LYY ++ + Sbjct: 376 MQAKLLRALQEGSFYRVGGIEPVSVDVRIIAATNQNLEELVQNNQFREDLYYRINVANLE 435 Query: 492 IPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENL 550 +PPLR + I L + + + I+ + L WPGN EL +VIE L Sbjct: 436 LPPLREKTEDIMPLTKRFIDHFSQVHGIEITEIEQAVMDTLEEYHWPGNVRELKNVIERL 495 Query: 551 ALSSDNGRIRVSDLP------------------EHLFTEQATDDVSATRLSTSLSFAEVE 592 + S G+I + LP E L + + DD + + ++ E+E Sbjct: 496 VIFSTQGKISIKALPSYLHPGPKFGSQDQQQLHEQLHRQHSQDDNFSNKSNSESKIDELE 555 Query: 593 KEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 ++ I+++ + +++ L I R+TL+ +MK I+ Sbjct: 556 RKTILDSLKKHSFNKAKVARELNIPRSTLYYRMKVLNIN 594 >UniRef50_B8D1H9 Putative PAS/PAC sensor protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1H9_HALOH Length = 877 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 102/462 (22%), Positives = 208/462 (45%), Gaps = 26/462 (5%) Query: 190 LTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAIT 249 S L E +++ L+ DG++ + G ++ +N ++ G+ + Sbjct: 416 EKRSELKEIQILNKEMDTLINFSCDGLVMVSKDGRIERVNHSYLNMVGFKRQDLIGKRVE 475 Query: 250 ELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTS--FILLLHPVE 307 EL + A K E+ + T P+ G ++ + ++ Sbjct: 476 ELEKERYIYPSVASLALKEKRNITLVENTSDKKRLLATANPVFNENGDLEWVVVNVRNLD 535 Query: 308 QMRQLMTSQLGKVSHTFAH--------------MPQDDPQTRRLIHFGRQAARSSFPVLL 353 + + K+ + + + + ++ R+ A + VL+ Sbjct: 536 LINDEKDKEKEKLKKYLDNAPQLDNNPEGNTGHIIVSSDEMKNILMTCRKIAGTDSTVLI 595 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNEN-GRL 409 GE GVGK ++++ IH +S ++ +NC ++ L E G + + + G+ Sbjct: 596 TGESGVGKEVVARYIHEQSPGRQE-FVKINCAAIPESLLESELFGYETGAFSGAKRAGKP 654 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 +E A GTLFL++I + + +Q+ LLQV+++ +TR+ + + ID ++IA T DL Sbjct: 655 GLIEKADRGTLFLDEIGEMPLNMQAKLLQVLQERKLTRIGGVKPVKIDFRLIAATNRDLR 714 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALA 529 +V Q F + L+Y L+ + IPPLR R I +L+ L ++++ ++K+ DA Sbjct: 715 QMVRQKYFRQDLFYRLNVVPLYIPPLRKRPEDILSLIKYFLDQYCEKYNKQIKLTRDAEE 774 Query: 530 RLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDV--SATRLSTSLS 587 L+S +WPGN EL ++IE L ++ + + + + E++ + + + Sbjct: 775 LLLSYSWPGNVRELTNLIERLVVTCEESFVDRNIIIEYIDNPEVKTPEILINKIMPLPEA 834 Query: 588 FAEVEKEAIINAAQVTGGR-IQEMSALLGIGRTTLWRKMKQH 628 A VEK+ + A + G +M+ LLG+ ++T+ RK+ ++ Sbjct: 835 VARVEKKLLSMA--RSKGNSTYDMAKLLGVNQSTVVRKLHKY 874 >UniRef50_Q312T1 Putative transcriptional regulator, Fis family n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q312T1_DESDG Length = 582 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 144/564 (25%), Positives = 230/564 (40%), Gaps = 51/564 (9%) Query: 103 NDGTYCAEGIIGTCALS------LAAISGQAVKTMADQHFKQVLWNW--------AF--- 145 GT +GT + A +G+ V Sbjct: 34 IAGTGRYAEGVGTSIIEAGQVYRTARRTGRPVYVEKP-----RFHPICDGCKKKDTCEEK 88 Query: 146 --CATPLFDSKGRLTGTIALACPVEQTTAADLP-------LTLAIAREVGNLLLTDSLLA 196 P+ G++ G I + C E+ A L ++ V + + Sbjct: 89 LTLCAPI-KIDGKVEGIIGIICFNEEDRARILKTRDSFLDFVDMMSNIVISAARDQQRIT 147 Query: 197 ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPA 256 + ++ L +++++ DGV + G L ++N A R +RL L Sbjct: 148 MMSNTVDMLQSVVDAYSDGVFVFGRDGQLTYVNEHAKRTIRLPDPP---------LPANL 198 Query: 257 VLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQ 316 L E ++ + + + + ++ H + R++ Sbjct: 199 TLTATGNTVEDADEYELSYNGKELMVMGRTVELAAQDPRFARLVIFEHQRDFTRRMSRFT 258 Query: 317 LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 S + + P RL R A SS VL+ GE G GK L ++AIH ES R Sbjct: 259 SQAHSDGLGAILGNSPAVVRLKERVRSIATSSSTVLIEGESGTGKELFARAIHKESNRHD 318 Query: 377 GPYIAVNCELYGDAALAEEFIGG---DRTDNEN-GRLSRLELAHGGTLFLEKIEYLAVEL 432 P+IA+NC D+ L E G T + GR+ + ELA+GG LFL++I + + L Sbjct: 319 QPFIAINCGAIPDSLLESELFGYISGAFTGARSSGRIGKFELANGGVLFLDEISSMPLYL 378 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q LL+V+++ ITRL + +LI ID++VIA T +L+ L+ N F LYY L I Sbjct: 379 QVKLLRVLQERTITRLGSNKLINIDIRVIAATNDNLSELIAHNSFRSDLYYRLKVIPFEI 438 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAWPGNDFELYSVIENLA 551 PPLR R + L + R +RF L+ ID + L S WPGN E + IE + Sbjct: 439 PPLRERLEDVDMLTEHFFRKYGERFGKNLRHIDPQCMDMLKSYPWPGNIREFENAIEFIV 498 Query: 552 LSS-DNGRIRVSDLPEHLFTE-QATDDVSATRLSTSLSFAEVEKEAIINAAQVTG---GR 606 +NG + + LP L + R + +E+E++AI A G G Sbjct: 499 NMMPENGVVTPAVLPPFLHAALRGEKKEQLDRQDDIIPLSELERQAIQRALDRFGSTTGG 558 Query: 607 IQEMSALLGIGRTTLWRKMKQHGI 630 + + LGIG TL+RK++ +G+ Sbjct: 559 KKLAAERLGIGLATLYRKIQLYGL 582 >UniRef50_B4U6M7 PAS modulated sigma54 specific transcriptional regulator, Fis family n=3 Tax=Aquificaceae RepID=B4U6M7_HYDS0 Length = 519 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 126/520 (24%), Positives = 220/520 (42%), Gaps = 57/520 (10%) Query: 116 CALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADL 175 C L L ++V+ + V W+ PLF+ Sbjct: 51 CPLKLVLEERESVQVYDIKTNTDVHACWSMS--PLFNGD-------------------KC 89 Query: 176 PLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARV 235 + + ++V N++ S + E+ R +L S+ + ++ DE G + N A ++ Sbjct: 90 EGVVEVFKDVSNVV---SCILESQRQKTYKETILNSIVEAILVLDENGYIVEHNNIAKKM 146 Query: 236 L-RLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIET 294 L R + GR I EL+ L + V Q +++ + Sbjct: 147 LCRTSEESLIGRHIKELVNLS---LEEFPPQGERTDVYIETPCGRQKASTLVSPMNL--- 200 Query: 295 QGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLC 354 G +++ + ++Q + ++ P ++++ + + + VL+ Sbjct: 201 -GFGYVVSFYVIQQDNMSFCDK-------LDYIFTKSPTFQKVLDLVKSCSEHNVNVLIE 252 Query: 355 GEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNENGRLSR 411 GE G+GK+LL++ IH S R P++ VNC + L E G T + + Sbjct: 253 GETGIGKSLLAKYIHLLSPRRDAPFVKVNCAAIPENLLEAELFGYVKGAFTGATKDKPGK 312 Query: 412 LELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAML 471 E+A GGTLFL++I + + LQ+ +L ++++ RL + + ++IA+T D+ L Sbjct: 313 AEIADGGTLFLDEIGDMPLSLQAKILHLVEEKEFERLGSNTPRKTNTRIIASTNKDIKEL 372 Query: 472 VEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALAR 530 + Q RF LYY L I +PPLR R+ IP L+NN + K +S R+K I DA+ Sbjct: 373 MRQGRFREDLYYRLSVVNIYLPPLRERKEDIPLLINNFIEKYSKLYSKRVKSISGDAIKM 432 Query: 531 LVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAE 590 L+ +PGN EL +IE ++ I + D+ + + Sbjct: 433 LLGYDFPGNIRELEHIIEKAVITCRGSIINIEDISLDFQSNNHK--------------QQ 478 Query: 591 VEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 EKE I + + +LGI RTTLWRK+K+ GI Sbjct: 479 EEKERIKAVLEKVNYNKSLAAKMLGIHRTTLWRKLKELGI 518 Score = 49.3 bits (117), Expect = 4e-04, Method: Composition-based stats. Identities = 11/117 (9%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 207 ALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAH 266 ++L+ + DGV+ + + N A ++L + + + + L+ +++ Sbjct: 4 SILDELLDGVLVIGLDYKIVYANDSAKKLLDVKENDFC-KGLFSI-CNSCPLKLVLEERE 61 Query: 267 PLKHVEATFESQHQFIDAVITLKPIIETQG-TSFILLLHPVEQMRQLMTSQLGKVSH 322 ++ + + + A ++ P+ + + V + + + ++ Sbjct: 62 SVQVYDI---KTNTDVHACWSMSPLFNGDKCEGVVEVFKDVSNVVSCILESQRQKTY 115 >UniRef50_Q8ES30 Transcriptional regulator n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES30_OCEIH Length = 573 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 124/507 (24%), Positives = 225/507 (44%), Gaps = 48/507 (9%) Query: 150 LFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALL 209 + + +G L G I E L + L+ + Sbjct: 90 IVNDEGELIGEIT---GKEWLHYHTT---------------ITKELKQKEEMLHLYEMVF 131 Query: 210 ESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLK 269 ++ +G+ D++G ++ N +R +++ + G+ ++ L +K P + Sbjct: 132 DTAYEGLTVVDDKGIIRLFNEAYSRYVKVPTEEAIGKDAALIIE-NTRLPVVLKTGVPER 190 Query: 270 HVEATFESQHQFIDAVITLKPIIETQGTSF---ILLLHPVEQMRQLMTS--QLGKVSHT- 323 + Q+ V+ PI + IL+ V ++ Q++ +L K H+ Sbjct: 191 SQAHRLQGQN----LVVHRIPIWKDNKVVAAAGILVYEGVSEIYQVIDQMEELDKTKHSK 246 Query: 324 -------------FAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHN 370 F + D P + R+A++S PVL+ GE GVGK +++QAIHN Sbjct: 247 FTKDPNKKNSLTRFEDLLGDSPCFTKTKKIARKASQSKAPVLITGESGVGKDIVAQAIHN 306 Query: 371 ESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIE 426 ES G +I+VNC +A L E G T + G+ ++ELAH GTLFL++I Sbjct: 307 ESPITRGRFISVNCAAIPEALLESELFGYSSGAFTGAEKGGKPGKIELAHKGTLFLDEIG 366 Query: 427 YLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALH 486 + + +Q+ +L+VI++ + R+ + ID ++I T D+ +V + F LYY L+ Sbjct: 367 DMPLTMQAKILRVIQEKSVERVGSNHQSNIDFRLITATNKDIKQMVHEGTFREDLYYRLY 426 Query: 487 AFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSV 546 I IP LR R IP +V++K+ L + R ID + + + W GN EL + Sbjct: 427 VIPIHIPSLRERAEDIPIIVSHKIAELNNEYGDRKTIDQLVVQWMYTQPWKGNIRELINF 486 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDD-VSATRLSTSLSF-AEVEKEAIINAAQVTG 604 +E L + S++ + + +LP+ + +Q + S E E++ I + Sbjct: 487 LERLYVLSESQHMTLDNLPDDIDDKQRLSSYNFLANKKVAESLSEEEERDRIKETLEHVK 546 Query: 605 GRIQEMSALLGIGRTTLWRKMKQHGID 631 G + + LLGI R TL+ K+ ++ ++ Sbjct: 547 GNKTKAAKLLGISRATLYNKLSRYTLE 573 >UniRef50_C6PP25 Proprionate catabolism activator, Fis family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PP25_9CLOT Length = 620 Score = 521 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 110/478 (23%), Positives = 202/478 (42%), Gaps = 22/478 (4%) Query: 162 ALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDE 221 +A T AI + + + + + Q A+L ++ GVIS ++ Sbjct: 154 NIASKFGIHTVHLETGEAAIEKSIKEAVRILEVSRKEKEKAEQFKAILNHINQGVISINK 213 Query: 222 QGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQF 281 +G + N A ++ + G+ I L +K P+ + + Sbjct: 214 EGKVTTFNPGAEKITGIIEKDILGKDIIN-FMSNTKLIDVVKTGMPILSQ---LHNIGKT 269 Query: 282 IDAVITLKPIIETQGTSFILLLHPV-------EQMRQLMTSQLGKVSHTFAHMPQDDPQT 334 + I++ + + +++R + + + + + + Sbjct: 270 EILTNDIPIIVDDKVVGAVSTFEAAAKIQEYEQKIRSNLRDKGYIAKYNLSDIIGESEII 329 Query: 335 RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAE 394 + + + A + VL+ GE G GK + +Q IH S+R GP++A+NC + Sbjct: 330 QNIKKKSLKYAVTDSTVLIVGESGTGKEMFAQGIHLSSKRKNGPFVALNCGAIPGNLIES 389 Query: 395 EFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA 450 E G + T G++ AHGGT+FL++I L +E Q+ LL+VI++ + L + Sbjct: 390 ELFGYEEGAFTGASRKGKMGLFTEAHGGTIFLDEIGELPIEFQARLLRVIQEREVRPLGS 449 Query: 451 RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKL 510 ++IPIDV++IA DL +E+ F LYY L+ + +P L RR I + + L Sbjct: 450 NKVIPIDVRIIAAANKDLLKEIEKGNFRSDLYYRLNILSMRVPTLMERREDIGIIFKHFL 509 Query: 511 RSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFT 570 + + RF+ +KI + A+ L WPGN EL ++ E L + ++ I + E L Sbjct: 510 KLMCSRFNKVVKISEKAINILKEYNWPGNIRELENITERLVVLAE-DEITDELVKEEL-- 566 Query: 571 EQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQH 628 D + S +++ I+ G + LGI RT LWR +K++ Sbjct: 567 ----GDFIHYKDEKVSSLEYLKQNQILKVLSECKGNQTLAAQKLGISRTHLWRLLKKY 620 >UniRef50_A6TVV8 Sigma54 specific transcriptional regulator, Fis family n=2 Tax=Alkaliphilus RepID=A6TVV8_ALKMQ Length = 470 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 118/470 (25%), Positives = 207/470 (44%), Gaps = 32/470 (6%) Query: 187 NLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGR 246 + ++ L + L + LL++ G++ D +G + N +++ + R Sbjct: 9 EIESSEDQLQQLKDSLEMIEELLDNAYHGMVLVDHEGRIIKWN--YEKLMGIKEEEVLMR 66 Query: 247 AITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLL 303 + E++ L K E + Q D + + PI++ G + +L Sbjct: 67 PVEEIIE-NTRLHIVAKTGE----KELFDVQKIQGYDMITSRIPIVKDGRVIGAAGTVLF 121 Query: 304 HPVEQMRQLMTS----------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARS 347 V+++ L+ +L + ++F H+ + Q L R+AA S Sbjct: 122 KDVKELESLVKRMKVLESTVDEYRGEIKRLHRAKYSFEHIVTQNRQMIYLKELARKAAES 181 Query: 348 SFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDN 404 + VL+ GE G GK + AIH S R G +I +NC + L E G T Sbjct: 182 NSTVLIQGESGTGKEFFAHAIHRASLRRYGSFITINCAAIPNELLESELFGYDAGAFTGA 241 Query: 405 EN-GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIAT 463 + G++ + EL +GGT+ L++I + +E+Q+ +L++++ R+ I +DV++IA Sbjct: 242 KKQGKVGKFELGNGGTIVLDEIGAMPLEMQAKILRILESREFERIGGNDRIQLDVRIIAA 301 Query: 464 TTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK- 522 T L +++ RF + LYY L+ I IPPLR R IP L L L +K Sbjct: 302 TNEPLEEAIKEGRFRQDLYYRLNVIPIEIPPLRERIEDIPILAQRILEKLAVDLGIEMKE 361 Query: 523 IDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRL 582 + + + L WPGN EL + +E I DLP HL E ++ + L Sbjct: 362 LTFETIEVLKKYQWPGNVRELRNTLERALNIVQGDMIYPEDLPGHLI-ESSSKSSYSHSL 420 Query: 583 STSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGIDA 632 A+ E EAI +A + + G + LGI RT L++K++ + ++ Sbjct: 421 LLKDIMAKTEIEAIQSALRDSNGNKSVAAKQLGIHRTALYKKIQAYEMNK 470 >UniRef50_Q9KBP6 Transcriptional regulator (Sigma-L-dependent) n=1 Tax=Bacillus halodurans RepID=Q9KBP6_BACHD Length = 555 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 116/465 (24%), Positives = 208/465 (44%), Gaps = 17/465 (3%) Query: 178 TLAIAREVGNLLLTDSLLA----ETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAA 233 + + L + E + +L LE D ++ D QG + +A Sbjct: 95 IEQVVAMIETYLSMEEKQRQYTVENRKLRQELKGFLEFEDKPLLLLDRQGIVTECSAGVQ 154 Query: 234 RVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIE 293 VL L+ + G I L + + + VE E + + I + Sbjct: 155 TVLGLNRSRLLGETIERLTSEKVKIDVTNVFKPSFQTVEMKLEGKREKWHVQIKPTYVQG 214 Query: 294 TQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLL 353 + I L ++ Q Q + ++F + R+ A +LL Sbjct: 215 EVVSFMIKFLK--KETNQF--KQSKDLLYSFQDIIGSSEAIHFAREMARRIAGQDITILL 270 Query: 354 CGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRL 409 GE G GK + +QA+H ES+RA GP++A+NC D L E G + T G+ Sbjct: 271 RGESGTGKEMFAQAVHRESQRAQGPFVAINCAAIPDNLLESELFGYESGAFTGAQRQGKA 330 Query: 410 SRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLA 469 R ELAHGGT+FL++I +++ LQ+ LL+V+++ + R+ + + +DV++IA T +L Sbjct: 331 GRFELAHGGTIFLDEIGDMSLHLQAKLLRVLQERKVERVGGTQSVYVDVRIIAATHRNLE 390 Query: 470 MLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDAL 528 +V++ F LYY L+ ITIPP+R R+ +P L+ ++ L + + K DA Sbjct: 391 EMVQKKTFREDLYYRLNVIPITIPPVRERKEDLPILIEYFMKRLSNKEKKQPKYFSKDAY 450 Query: 529 ARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSF 588 + WPGN E+ +++E++ I LP +L ++ S +++ + Sbjct: 451 DLIFRYPWPGNVREIVNMVEHVIYLETGDLITADSLPAYLKIKEGK-STSQLQINVAPHG 509 Query: 589 AEVEKEAIINAAQVTGGR---IQEMSALLGIGRTTLWRKMKQHGI 630 E K+ +++ V G + ++ +GI TL+R++K+ I Sbjct: 510 EESFKQQVLHLLDVYGRHTEGKKRIAKEMGISLPTLYRRLKKLKI 554 >UniRef50_C0GD56 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GD56_9FIRM Length = 454 Score = 520 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 118/451 (26%), Positives = 202/451 (44%), Gaps = 34/451 (7%) Query: 204 QLNALLESMDD---GVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQ 260 ++ LLE D G + D + + A +L +D + G+ +TE++ + + + Sbjct: 8 EIYELLEKAFDEFKGALVVDRNSRIVLLTRGYAEILGVDRKEAIGKPVTEVIP-HSRMSE 66 Query: 261 AIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQ---GTSFILLLHPVEQMRQLMTS-- 315 +K P + + A+I+ PI + G + ++++R + Sbjct: 67 VLKSGEPEIAQVWEVKGE----TAIISRVPIKRGEEVIGVVAFSVFRGMDEVRDFLGRLR 122 Query: 316 --------------QLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGK 361 +L + ++ P R+ A++ +LL GE G GK Sbjct: 123 YLDAELNYYRSEVEKLRGARFSLENILGISPAINRVKEQLACIAKNDSTLLLTGETGTGK 182 Query: 362 ALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHG 417 L + A+H S+R G I VNC D L E G + T + G+ + ELA+ Sbjct: 183 ELFAHALHLSSKRRFGHLIKVNCAAIPDELLESELFGYEEGAFTGARKGGKPGKFELANR 242 Query: 418 GTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRF 477 GTLFL++I + LQ+ LL+V++ G I R+ + +DV+++A T +LA LV +F Sbjct: 243 GTLFLDEIGEMPARLQAKLLRVLQDGEIERIGGTEPLQVDVRIVAATNKNLAELVRHRQF 302 Query: 478 SRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLK-IDDDALARLVSCAW 536 LYY L+ E+ IPPLR R IP LV + +R L R ++K I + S W Sbjct: 303 REDLYYRLNVIELHIPPLRERMEDIPCLVVHFIRELNHRLGVKVKGITPEVEEVFQSYHW 362 Query: 537 PGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAI 596 PGN ELY+V+E I ++D+ L ++ +R S + +E + I Sbjct: 363 PGNVRELYNVLERTMNVIQRDVIGLADINWFLPRVLSSSGRQTSRSS--NTLRNLEAKII 420 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQ 627 + G + +LGI R+T++ K+K+ Sbjct: 421 HRVLESCNGNKSRAAEILGIHRSTIYNKLKR 451 >UniRef50_C6Q1R8 PAS modulated sigma54 specific transcriptional regulator, Fis family n=2 Tax=Clostridium RepID=C6Q1R8_9CLOT Length = 525 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 107/452 (23%), Positives = 207/452 (45%), Gaps = 13/452 (2%) Query: 192 DSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITEL 251 + L ++ +L A+++++ DG+++ + ++ N ++ G+ I +L Sbjct: 73 EVELLSYEKNERKLLAIIDAVQDGILAINHNEQIELFNNYCEKIFHTKKEYIVGKNIRQL 132 Query: 252 LTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGT--SFILLLHPVEQM 309 L A + +K ++E ++ + + + + + +G + + L + + Sbjct: 133 LGFDAPIINLLKTGKDYDNIEIFTKNAKSNFHYITSGRSVKDDKGQTLAAVASLKDINEA 192 Query: 310 RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIH 369 ++ K F + + + A + +LL GE G GK L ++AIH Sbjct: 193 IEMTNVITSKEDLAFKDIIGNSASMVKTRKICMAVANGNSTILLRGESGTGKELYAKAIH 252 Query: 370 NESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDN-ENGRLSRLELAHGGTLFLEKI 425 S R++ ++A+NC D + E G + T E G+ + AH GTLFL++I Sbjct: 253 KLSSRSSKNFLAINCAALPDNLIESELFGYEKGSFTGAIEKGKDGLFKAAHNGTLFLDEI 312 Query: 426 EYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYAL 485 L++ LQ+ LL+V+++G I ++ + IDV++IA T +L ++ +N F LYY L Sbjct: 313 GELSLSLQAKLLRVLQEGTIRKIGSTIEQKIDVRIIAATNRNLEDMISKNTFREDLYYRL 372 Query: 486 HAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRLKIDDDA-LARLVSCAWPGNDFELY 544 + I IP L+ R IP LVN +++L K+ +K + A + +LV+ WPGN EL Sbjct: 373 NVIPIYIPCLKDRIEDIPMLVNFFIKNLNKQMGKNIKGAEMAFIEKLVNSNWPGNVRELK 432 Query: 545 SVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT-----RLSTSLSFAEVEKEAIINA 599 +V+E ++ +L + S EK+A+I+A Sbjct: 433 NVVERAMNLCHGSLLKEENLIMDFEKNSNYETASDDYEFNFNFKLKDVVEAAEKKALISA 492 Query: 600 AQVTGGRIQEMSALLGIGRTTLWRKMKQHGID 631 + ++ + LG+ TT+ K+ ++ ID Sbjct: 493 IKKYK-SCRKAAKALGVSHTTIINKLNKYKID 523 >UniRef50_A8RIT6 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RIT6_9CLOT Length = 639 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 214/467 (45%), Gaps = 19/467 (4%) Query: 179 LAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRL 238 AI R + + T ++ + ++ DGV+ D Q ++ N A ++ Sbjct: 174 EAITRALDEAVRTVDVVRMERERSAMFTTITQTAMDGVLYVDIQQTIKICNPAALKMYTG 233 Query: 239 DATASQGRAITELLT-LPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP-IIETQG 296 QG ++ L + I L + +++ T+ P II ++ Sbjct: 234 PKKKLQGLSLQSAFPFLSEPVSTVISTGTELPNQLIRWKN----YTINATIHPVIINSRI 289 Query: 297 TSFILLLHPVEQM-------RQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSF 349 T ++ V Q+ R+ MT + + F + + P+ +I ++ A S Sbjct: 290 TGIVVTFQDVTQIQQVEIQIRKKMTDKGLNAHYHFNDIIHESPEIDYVIEKAKKFASVSS 349 Query: 350 PVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTD-NE 405 +L+ GE G GK L +Q+IHN S R GP++AVNC + L E G T + Sbjct: 350 NILIEGETGTGKELFAQSIHNASTRCNGPFVAVNCAALPENLLESELFGYVEGAFTGTAK 409 Query: 406 NGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTT 465 G+ ELAH GTLFL++I + + +Q LL+V+++ + R+ R+I +DV++IA T Sbjct: 410 GGKTGLFELAHKGTLFLDEISEIPLSIQGKLLRVLQEHEVRRVGGDRVISVDVRIIAATN 469 Query: 466 ADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KID 524 L+ + EQ RF + L Y L+ ++ +PPLR R G L + L ++ + + Sbjct: 470 HSLSRITEQGRFRQDLLYRLNVLKLFLPPLRRRCGDTKILFLHYLNLYYRQLGRIIPHVA 529 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSS-DNGRIRVSDLPEHLFTEQATDDVSATRLS 583 A+ L +PGN EL +V E L + D I D+ E L E+ +T + Sbjct: 530 TAAIQMLSDYHFPGNIRELRNVTERLVVICMDKEEITADDMREALHPEELPVKFQSTDMP 589 Query: 584 TSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + + E+E +I + + + LGI RTTLWR+MK+HGI Sbjct: 590 IPPFYQDGEREFLIRILEESNYNQTLTAEKLGINRTTLWRRMKKHGI 636 >UniRef50_Q0AVD1 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVD1_SYNWW Length = 554 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 113/441 (25%), Positives = 213/441 (48%), Gaps = 18/441 (4%) Query: 204 QLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIK 263 QLN+LL++ +G+ +D+ +L + N ++++ + ++ L+ LQQAI Sbjct: 118 QLNSLLQTPYEGIAVFDKNAHLLYSNEVCRGFFPCNSSSELNQKMSALIPW-TNLQQAID 176 Query: 264 QAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILL------LHPVEQMRQLMTS-Q 316 + + + Q + + PI+ + +++ L + + QL+ Q Sbjct: 177 RGKTFSTEVLSPDGQALRLVFL----PIMRHNRSLGVIVKSSQVELSRINEWEQLLEQYQ 232 Query: 317 LGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAA 376 G ++ ++ ++ +AARS VL+ GE G GK + + AIHN S R Sbjct: 233 QGTARYSINNIVGNNQLICEQKALAARAARSVSTVLITGESGTGKEIFAHAIHNMSPRRK 292 Query: 377 GPYIAVNCELYGDAALAEEFIGG---DRTDN-ENGRLSRLELAHGGTLFLEKIEYLAVEL 432 G ++ VNC + L E G T + G+ + ELA+ GT+FL++I +++ + Sbjct: 293 GSFVKVNCAAVPETLLESELFGYNEGAFTGALKEGKPGKFELANHGTIFLDEIADMSLSM 352 Query: 433 QSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITI 492 Q+ LL+V+++ + R+ + ++++VIA T +LA LV +N+F L+Y L+ + + Sbjct: 353 QAKLLRVLQEKEVERIGSLSSTKVNIRVIAATNQNLAELVSENKFREDLFYRLNVIVLNL 412 Query: 493 PPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSVIENLA 551 PLR R IP L ++ L L + TR+ KI+ + + S WPGN EL + IE Sbjct: 413 LPLRQRVDDIPLLSHHLLHRLNQELGTRVEKINPEVIQSFCSYDWPGNIRELENTIERAV 472 Query: 552 LSSDNGRIRVSDLPEHLFTEQAT-DDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEM 610 + I ++D+P+++ + + + S + EK I + GG + Sbjct: 473 NFCEGNTITINDIPDNIIQRKNHYSSTTGSHSSLDNILGKQEKALIEEVLKNCGGNKSKA 532 Query: 611 SALLGIGRTTLWRKMKQHGID 631 + L I R+ L+RK+ ++ I Sbjct: 533 AKTLNIHRSVLYRKLHKYDIK 553 Score = 58.9 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 56/130 (43%), Gaps = 4/130 (3%) Query: 193 SLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELL 252 SL E + H L +L+++D+G++ D N+ F N A ++L L+ G+ + L Sbjct: 2 SLNLELHSHDLLLYPILQNIDEGILITDTSLNIIFCNENAGKILGLNPNQILGQNVDCLK 61 Query: 253 TLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQL 312 Q +K ++ E + ++ ++P + + +LH ++ ++ Sbjct: 62 PHLTFDNIIKDQRRIVKDIKVINEDEVNVTRGLLEIRP----KCYAAYAILHTIDSFKEY 117 Query: 313 MTSQLGKVSH 322 + L + + Sbjct: 118 QLNSLLQTPY 127 >UniRef50_UPI00016C5695 DNA-binding protein Fis / transcriptional regulator, Fis family n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5695 Length = 635 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 134/513 (26%), Positives = 202/513 (39%), Gaps = 36/513 (7%) Query: 147 ATPLFDSKGRLTGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNR-HLNQL 205 PL D+ G + G +A+ L T I L + R + Sbjct: 126 GVPLRDASGAVLGHLAVFDARPMPPEPRLLYTFQIFAARAAAELDRLRMDRMLRDSEERF 185 Query: 206 NALLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQ- 264 L E + D + N A RVL L + G L+ Q+ +K+ Sbjct: 186 RDLFEEAPVAYVHEDMESRFIRANRTALRVLGLKPEEAVGTVGMSLVPDTPDAQRLVKEA 245 Query: 265 ------AHPLKHVEATFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLG 318 V + I + G + V + + Q Sbjct: 246 FASIGRGTDTGGVVLELRRKDDGRPIWIQWWSRPDRGGQFTRTVFIDVTERVLMEREQAR 305 Query: 319 ------------KVSHTFAHMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQ 366 K +H F + P ++ + A + VL+ GE G GK L+++ Sbjct: 306 LQQQNVYLQEELKAAHNFDEIVGQSPALVSVLQRVSKVAGTDSTVLITGETGTGKELVAR 365 Query: 367 AIHNESERAAGPYIAVNCELYGDAALAEEFIGGD---RTDNENGRLSRLELAHGGTLFLE 423 A+H+ S R A P I +NC + E G + T + R ELA GGTLFL+ Sbjct: 366 AVHSASPRKAKPLIKLNCAALPTHLVESELFGHEKGAFTGAVARKPGRFELADGGTLFLD 425 Query: 424 KIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYY 483 ++ L++E Q+ LL+V+++ R+ + +DV+VIA T DLA LV++ F L Y Sbjct: 426 EVGELSLEAQAKLLRVLQEREFERVGGTAPVKVDVRVIAATNRDLAQLVKEGAFRADLLY 485 Query: 484 ALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFE 542 L+ F + +P LR R G IP LV + R R+ ++ D L LV WPGN E Sbjct: 486 RLNVFPVRLPALRERPGDIPLLVRFFVTKFAGRLGKRIERVSGDTLDALVGYDWPGNIRE 545 Query: 543 LYSVIENLALSSDNG--RIRVSDLPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAA 600 L +VIE A+ SD I LP T +A + S VE + I + Sbjct: 546 LENVIERAAILSDGPELVIDPDVLP-------VTRGGAAPAGAGGQSLVAVEADHIRSVL 598 Query: 601 QVTGGRI---QEMSALLGIGRTTLWRKMKQHGI 630 TG I + +LG+ TL +MK+ GI Sbjct: 599 AQTGWVIEGPNGAATVLGLHPNTLRSRMKKLGI 631 >UniRef50_Q67SC0 Sigma-54-dependent transcriptional regulator n=2 Tax=Symbiobacterium thermophilum RepID=Q67SC0_SYMTH Length = 479 Score = 519 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 119/454 (26%), Positives = 207/454 (45%), Gaps = 38/454 (8%) Query: 208 LLESMDDGVISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHP 267 +L+S+ DGV++ D +G + + N R+ L GR ++E++ + + + P Sbjct: 32 VLDSLHDGVVAVDSEGYVIYANEANTRITGLTRDQVVGRHVSEVVP-NSHILDVLASRTP 90 Query: 268 LKHVEATFESQHQFIDAVITLKPII-ETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFA- 325 L V V + P+ + + + + + ++ L + QL + +T Sbjct: 91 LLGVRTRVFDHV----VVSNIVPVYHQGRMVGAVSVFRDITEVLAL-SRQLDEARNTIDL 145 Query: 326 --------------HMPQDDPQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNE 371 + P +R+ R+AA PVL+ GE G GK ++++ IHN Sbjct: 146 LRENLTAAPVAEDGVIIGQSPAAQRMYLTARKAATVDSPVLIEGESGTGKEVMARLIHNR 205 Query: 372 SERAAGPYIAVNCELYGDAALAEEFIGGD---RTD-NENGRLSRLELAHGGTLFLEKIEY 427 S R + P IAVNC L E G + T + GR +LA GGTLFL++I Sbjct: 206 SARRSQPLIAVNCAAIPGTLLESELFGYEEGAFTGSRKGGRPGLFQLADGGTLFLDEIGD 265 Query: 428 LAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHA 487 + LQ+ LL+ ++ G I R+ + ++V++I+ T +LA LV + RF LYY L Sbjct: 266 MDPGLQAKLLRALQSGEIRRVGGTTVQKVNVRIISATNQNLAQLVREKRFREDLYYRLRV 325 Query: 488 FEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL-KIDDDALARLVSCAWPGNDFELYSV 546 + +PPLR RR +P + + +R + +R + AL L++ +PGN EL +V Sbjct: 326 IHLVLPPLRERRADLPLFLEHAMRRVCERLGRPPARFSPAALRALMAYPFPGNIRELENV 385 Query: 547 IENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLSTS----------LSFAEVEKEAI 596 +E + ++ I V DLP + + A R + EVE+ + Sbjct: 386 VEQAVVLAEGDVIDVGDLPPDVVGAETAAAGPADRSGDGWLGLNDPGTFPTLEEVERRVL 445 Query: 597 INAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 + E++ LG+ R TL+RK+ ++G+ Sbjct: 446 EAGLRAFD-SKAELARHLGLSRATLYRKLARYGL 478 >UniRef50_A1VFM6 Sigma54 specific transcriptional regulator, Fis family n=3 Tax=Desulfovibrio vulgaris RepID=A1VFM6_DESVV Length = 569 Score = 519 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 128/470 (27%), Positives = 205/470 (43%), Gaps = 25/470 (5%) Query: 176 PLTLAIAREVGN---LLLTDSLLAETNRHLNQLNALLESMDDGVISWDEQGNLQFINAQA 232 L A+AR + +L E R L A+ S+ D ++S G + IN Sbjct: 108 ALLAAVARAHAHKSLQDERAALHDELQRLRAHLEAIFRSVPDVLVSVGRDGRVVRINDAG 167 Query: 233 ARVLRLDATASQGRAITELLT-----LPAVLQQAIKQAHPLKHVEATFESQHQFIDAV-I 286 VLRL +GR E+ L VL+ A++ + + Sbjct: 168 LGVLRLSGEEVEGRHWQEVFGEWESQLGDVLRHALESRQRVPRRRVNITVDEGASQVFEV 227 Query: 287 TLKPIIETQG--TSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQA 344 + P+ G +L+L + ++ + P +R+ H Sbjct: 228 SASPLRGETGDYLGAVLVLRDISRLAACCPPGGAPGE---WGLVGLSPAMQRIYHLLEDL 284 Query: 345 ARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DR 401 A + VL+ GE G GK L+++A+HN RA GP I VNC + L E G Sbjct: 285 APTDTTVLVTGESGTGKELVAEALHNAGPRATGPLIKVNCAALPETLLESELFGHVRGAF 344 Query: 402 TDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVI 461 T R+ R +LAHGGT+FL++I L+ ++Q LL+V+++ R+ R +DV+VI Sbjct: 345 TGALRDRVGRFQLAHGGTIFLDEIGDLSPQVQLRLLRVLQEREFERVGDTRTTRVDVRVI 404 Query: 462 ATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNKLRSLEKRFSTRL 521 A T +L V F LYY L E+ +PPLR R + L + + ++FS + Sbjct: 405 AATHRNLRERVASGLFREDLYYRLRVVELHMPPLRERHEDLALLAEHFVGVFNQQFSRCV 464 Query: 522 -KIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSAT 580 + A L++ +WPGN EL +E+ + RI ++DLP + +A+ A Sbjct: 465 MGFTEAASRALMTHSWPGNVRELRHAVEHGFILCKGERIDLADLPPDVQGTEASVFPRAE 524 Query: 581 RLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 R + A+ A + GG + LLG+ R TL+RK+ ++GI Sbjct: 525 RSGVHEA-------AVREALKKAGGNKARAARLLGVARQTLYRKLAEYGI 567 >UniRef50_B8EPN2 GAF modulated sigma54 specific transcriptional regulator, Fis family n=4 Tax=Rhizobiales RepID=B8EPN2_METSB Length = 660 Score = 519 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 144/659 (21%), Positives = 239/659 (36%), Gaps = 34/659 (5%) Query: 2 SGAFNNDGRGISPLIATSWERCNKLMKRETWN---VPHQAQGVTFASIYRRKKAM-LTLG 57 +G + P ++ +W RC + + PH + + + Sbjct: 4 TGQPPEGDDWVRPQVSEAWYRCIEEYRLSPRTNLLRPHAIMDFENGARATSATNLDVRTA 63 Query: 58 QAALE-DAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTC 116 A + + + +L + D ++ L + G E IIG Sbjct: 64 LATMAFNLQPALRDTSVSLLLADSAGTLIHALDAGSNLGPMGRRLVRLGESWNELIIGNN 123 Query: 117 ALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGTIALACPVEQTTAADLP 176 L AA+ + V +HF +L +A PLF G L + L + L Sbjct: 124 GLGTAAVLREPVAFDGKEHFSSILHPFATVGHPLFAHDGSLVALLGLITDQRSSAQTLLG 183 Query: 177 LTLAIAREVGNLLLTDSLLAE--TNRHLNQLNALL---ESMDDGVISWDEQGNLQFINAQ 231 V L LN ++A L + + DG+IS DEQG + Sbjct: 184 FVRIAGYLVETNLFECQAPGAFMLRMRLNNISAGLTGQDCLLDGLISLDEQGRIVGATRT 243 Query: 232 AARVLRLDAT-ASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFESQHQFIDAVITLKP 290 +LR + + + +L + +A + +E + ++ +P Sbjct: 244 GLNLLRAERHSDILSKKVEAVLGVTLGDLRACARQGEPIELEIP-HGWRLKAEFIVRRRP 302 Query: 291 IIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQTRRLIHFGRQAARSSFP 350 + +S + + + G D + P Sbjct: 303 EKDIVQSSRVSTVKGGSRAAPGAAPGRGAKEGNGEE--WRDAVLEAAQQKAINLQKQKIP 360 Query: 351 VLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAALAEEFIGG---DRTDNE-N 406 +L+ GE GVGK L + IH + R P + VNC ++ E G T Sbjct: 361 ILITGESGVGKDHLVRMIHAQGIRKGRPLVLVNCAAIPRDLISSELFGYVPGSFTGARTG 420 Query: 407 GRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDARRLIPIDVKVIATTTA 466 G+ + AH G LFL++I +A++LQ+ALL + I + + + +DV+VIA T + Sbjct: 421 GKAGKFVEAHTGVLFLDEIGDMALDLQTALLCALDSSEIVPVGGSKPVRVDVQVIAATNS 480 Query: 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNNK--LRSLEKRFSTRLKID 524 DL V + F R LYY L+ + +PPLR R L+ + L + R + Sbjct: 481 DLPDCVRKGAFRRDLYYRLNGAQFWLPPLRERP-DKLGLIEHLWELELKAQGVDERKTLS 539 Query: 525 DDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPEHLFTEQATDDVSATRLST 584 + WPGN EL +V+ + + +VSDLP E + Sbjct: 540 AEVWDIFERHPWPGNIRELLNVLRSCLAMTTGRETQVSDLPIDFLKEMSASAQGDEEGEA 599 Query: 585 SLS-------------FAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRKMKQHGI 630 +LS A+ E +AI +A T G I E + LGI R TL+ KM + G+ Sbjct: 600 ALSTLAKWRPSLEAKALADWEADAIRSALAKTAGNISESARQLGITRATLYHKMARLGL 658 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.178 0.613 Lambda K H 0.267 0.0545 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,834,801,345 Number of Sequences: 3077464 Number of extensions: 301660136 Number of successful extensions: 844832 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 15515 Number of HSP's successfully gapped in prelim test: 7489 Number of HSP's that attempted gapping in prelim test: 782304 Number of HSP's gapped (non-prelim): 45851 length of query: 639 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 504 effective length of database: 624,938,716 effective search space: 314969112864 effective search space used: 314969112864 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 97 (41.6 bits)