BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (91 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 ... 119 4e-26 UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subuni... 96 4e-19 UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 T... 94 2e-18 UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 T... 93 3e-18 UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=... 86 3e-16 UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 T... 85 7e-16 UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Ta... 82 5e-15 UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Ta... 80 1e-14 UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 T... 79 4e-14 UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Ta... 78 7e-14 UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Ta... 78 7e-14 UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 T... 75 5e-13 UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Ta... 72 4e-12 UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 T... 71 9e-12 UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Ta... 70 2e-11 UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Ta... 69 4e-11 UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap ... 67 2e-10 UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subuni... 67 2e-10 UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 T... 65 6e-10 UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Ta... 65 1e-09 UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 T... 64 1e-09 UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 T... 64 1e-09 UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 T... 64 2e-09 UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 T... 64 2e-09 UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 T... 63 2e-09 UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Ta... 63 3e-09 UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Ta... 62 5e-09 UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 T... 61 1e-08 UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Ta... 60 2e-08 UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 T... 60 2e-08 UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Ta... 60 3e-08 UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Ta... 59 4e-08 UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Ta... 59 5e-08 UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobact... 59 6e-08 UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Ta... 58 1e-07 UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 T... 57 1e-07 UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Ta... 56 3e-07 UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Ta... 55 8e-07 UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Ta... 55 9e-07 UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 T... 54 2e-06 UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Ta... 52 7e-06 UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Ta... 51 1e-05 UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Ta... 51 1e-05 UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 T... 51 1e-05 UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 T... 50 2e-05 UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 T... 50 2e-05 UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Ta... 48 7e-05 UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=... 48 9e-05 UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 T... 48 1e-04 UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaprote... 46 4e-04 UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 T... 45 5e-04 UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chai... 44 0.001 UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Ta... 44 0.002 UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococ... 43 0.004 UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 T... 42 0.006 UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Ta... 41 0.012 UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Ta... 40 0.027 UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 T... 39 0.069 UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 T... 39 0.072 UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 T... 38 0.084 UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 T... 38 0.089 >UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 Tax=Gammaproteobacteria RepID=RPOZ_COLP3 Length = 95 Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 60/91 (65%), Positives = 73/91 (80%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+K+GNRFDLVLVA+RRARQ+ GGKDPLV ENDK TVIALREIE GLI Sbjct: 1 MARVTVEDAVDKVGNRFDLVLVASRRARQIATGGKDPLVDVENDKPTVIALREIEAGLIT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 I++ +R +Q +Q+ AEL AV AI G++ Sbjct: 61 TDIMNTSDRAQQIQQDTAELDAVAAIVGGQQ 91 >UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E105D0 Length = 89 Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/86 (59%), Positives = 63/86 (73%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAVE+IGNRFDLVLVAA+RARQ+ GK+P+V NDK TV+ALREIE+ L+ Sbjct: 1 MARVTVEDAVEQIGNRFDLVLVAAKRARQIATEGKEPMVDMGNDKPTVVALREIEQQLVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAI 86 L+ E EQ + E AE +V I Sbjct: 61 ADSLEAAEIAEQHQAEQAEFASVANI 86 >UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 Tax=Proteobacteria RepID=RPOZ_TERTT Length = 93 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/74 (60%), Positives = 58/74 (78%), Gaps = 2/74 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V +RARQ+ V GK P+VPEENDK TVIALREIEEG I+ Sbjct: 1 MARITVEDCLDHVDNRFELVIVGTKRARQLAVQGKTPMVPEENDKPTVIALREIEEGFID 60 Query: 61 NQILDVRERQEQQE 74 ILD E+ E Q+ Sbjct: 61 ASILD--EKDEPQD 72 >UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 Tax=Proteobacteria RepID=RPOZ_PSEA6 Length = 90 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/86 (56%), Positives = 61/86 (70%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+KIGNRFDLVLVAARRARQ+ + GK V DK TV+ALREIEEG + Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQLAIEGKVAHVSVGTDKPTVVALREIEEGHVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAI 86 LD ++Q Q+ A+ ++V I Sbjct: 61 ASTLDAENLRDQHAQDQAQFESVANI 86 >UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYJ9_9BACT Length = 107 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 40/73 (54%), Positives = 53/73 (72%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L++V+ +RARQ+ GGK+ + ENDK TV+ALREI EG IN Sbjct: 1 MARVTVEDCLENVDNRFELIMVSTKRARQLATGGKEAHIEWENDKCTVVALREIAEGFIN 60 Query: 61 NQILDVRERQEQQ 73 ILD + QQ Sbjct: 61 ASILDDHDEINQQ 73 >UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJB3_9GAMM Length = 91 Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 42/74 (56%), Positives = 57/74 (77%), Gaps = 1/74 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF+LVL+AARRAR + GK+P V E+NDK TVIALREI EGL+ Sbjct: 1 MARVTVEDCLEKVDNRFELVLMAARRARHI-AHGKEPRVSEDNDKPTVIALREIAEGLVG 59 Query: 61 NQILDVRERQEQQE 74 ++ D + + Q++ Sbjct: 60 TEVFDEHDERPQKQ 73 >UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Tax=Gammaproteobacteria RepID=RPOZ_SACD2 Length = 90 Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 38/64 (59%), Positives = 51/64 (79%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V ++RARQ+ GK+PLV ENDK TVIALREIE GLI+ Sbjct: 1 MARITVEDCLDYVDNRFELVIVGSKRARQIATQGKEPLVAPENDKPTVIALREIELGLID 60 Query: 61 NQIL 64 + L Sbjct: 61 DAFL 64 >UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=RPOZ_VESOH Length = 110 Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/64 (57%), Positives = 49/64 (76%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL+AA+RA Q+ GG PL+ DK TV+ALREIE GLI+ Sbjct: 1 MARVTVEDCLDHVENRFELVLIAAKRAHQLSSGGYKPLLNAGKDKPTVVALREIEAGLID 60 Query: 61 NQIL 64 + IL Sbjct: 61 SSIL 64 >UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_PSEMY Length = 87 Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 34/64 (53%), Positives = 51/64 (79%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LV++A +R+RQ+ GGK+P V ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVAWENDKPTVVALREIAAGLVD 60 Query: 61 NQIL 64 +++ Sbjct: 61 YEVV 64 >UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Tax=Pseudomonas RepID=RPOZ_PSE14 Length = 87 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 34/64 (53%), Positives = 50/64 (78%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+LV+++ +RARQ+ GGK+P + ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 60 Query: 61 NQIL 64 ++ Sbjct: 61 YAVI 64 >UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Tax=Coxiella burnetii RepID=RPOZ_COXBN Length = 97 Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 7/77 (9%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRFDLVL AA+RA +++GG +P+VP +NDK V+ALREI G Sbjct: 1 MARVTVEDCLEHVENRFDLVLKAAKRAHILELGGAEPMVPRDNDKPAVLALREIAAG--- 57 Query: 61 NQILDV-RERQEQQEQE 76 DV RE QEQ+ +E Sbjct: 58 ---YDVTREGQEQETEE 71 >UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 Tax=Proteobacteria RepID=RPOZ_CHRSD Length = 83 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 35/65 (53%), Positives = 49/65 (75%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF LV+VA +R+RQ+ G +D +P ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD 60 Query: 61 NQILD 65 IL+ Sbjct: 61 RSILN 65 >UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Tax=Proteobacteria RepID=RPOZ_HALHL Length = 123 Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 1/68 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL A+RARQ+ G +PLV ENDK TV+ALREI G + Sbjct: 1 MARVTVEDCLDNVDNRFELVLAGAKRARQL-AKGIEPLVDWENDKPTVVALREIAAGHVT 59 Query: 61 NQILDVRE 68 ++IL E Sbjct: 60 SEILTSTE 67 >UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVX3_HALNC Length = 107 Score = 71.2 bits (173), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 1/65 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + KI NRF+LVL+AARRARQ++ G +PLVP +K VIALREI EG I+ Sbjct: 1 MARVTVEDCLVKIPNRFELVLMAARRARQIEQGA-EPLVPMGKEKPVVIALREIGEGKID 59 Query: 61 NQILD 65 +D Sbjct: 60 QARID 64 >UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2G6_9PROT Length = 87 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/79 (50%), Positives = 58/79 (73%), Gaps = 3/79 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPE-ENDKTTVIALREIEEGLI 59 MARVTV+D + NRF++VL+AARRARQ+QVG PL+ E E DK +V ALRE+ EG + Sbjct: 1 MARVTVEDCISYYPNRFEMVLLAARRARQIQVGM--PLMMETEGDKPSVSALREMGEGFV 58 Query: 60 NNQILDVRERQEQQEQEAA 78 + ++L ++ Q ++ Q+AA Sbjct: 59 SWEVLFEQDDQLRRRQQAA 77 >UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Tax=Acidithiobacillus ferrooxidans RepID=RPOZ_ACIF2 Length = 91 Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/65 (56%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L LVAARRARQ+ G P V DK TVIALRE+ G ++ Sbjct: 1 MARVTVEDCLEHVDNRFELTLVAARRARQLASGAA-PEVEPGRDKNTVIALREVAAGKVS 59 Query: 61 NQILD 65 ILD Sbjct: 60 RAILD 64 >UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap omegasubunit) (Transcriptase subunit omega) (Rna polymerase omega subunit) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNE4_9RICK Length = 151 Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 11/99 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + N++DLV++A R Q+ G K P+V E+NDK TV++LREI + L++ Sbjct: 1 MARVTVEDCLEVVDNQYDLVILAKERTLQIGAGDK-PMVSEDNDKKTVLSLREIGDKLLD 59 Query: 61 NQILDV----RERQ------EQQEQEAAELQAVTAIAEG 89 + L+ R R+ EQ+E +A E A I +G Sbjct: 60 QKTLETQTVDRAREHPEDAMEQEEYDAPEGDAFEEIYKG 98 >UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699E3B Length = 75 Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/73 (53%), Positives = 49/73 (67%), Gaps = 7/73 (9%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQ 72 + NRFDLVLVA +RARQ++ G +PL+P ENDK TV+ALREI +GLI Q L EQ Sbjct: 1 MDNRFDLVLVATKRARQLE-HGVEPLLPWENDKPTVMALREIADGLIAGQDL------EQ 53 Query: 73 QEQEAAELQAVTA 85 E EA + A + Sbjct: 54 PEDEAMVVDATIS 66 >UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 Tax=Hyphomicrobiaceae RepID=C6QAV6_9RHIZ Length = 152 Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 6/88 (6%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+KI NRF+LVL+AA RAR + G + P++ DK VIALREI E +++ Sbjct: 1 MARVTVEDCVDKIPNRFELVLLAAHRARAITNGSAITIAPDD-DKNPVIALREIAEKMLS 59 Query: 61 NQILDVRE---RQEQQEQEAAELQAVTA 85 D+RE Q+ E E +AV A Sbjct: 60 PD--DMRETLISSIQKNTEVDEPEAVAA 85 >UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Tax=Magnetococcus sp. MC-1 RepID=RPOZ_MAGSM Length = 121 Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 44/60 (73%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV D V+ + NRF+LV++AA+RARQ+ G + P V + DK TV+ALREI E +N Sbjct: 1 MARVTVDDCVQHVSNRFELVILAAKRARQLAKGAE-PEVSVDRDKNTVVALREIAESKLN 59 >UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 Tax=Proteobacteria RepID=RPOZ_ALHEH Length = 107 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + + NRF LVLV ++RARQ+ G + V +NDK TV+ALREI +G + Sbjct: 1 MARVTVEDCLTNMDNRFQLVLVGSKRARQL-ANGAEAHVDWDNDKPTVVALREIADGHVG 59 Query: 61 NQIL 64 +IL Sbjct: 60 REIL 63 >UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 Tax=Xanthomonadaceae RepID=RPOZ_XYLFT Length = 99 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 33/67 (49%), Positives = 49/67 (73%), Gaps = 3/67 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN--DKTTVIALREIEEGL 58 MAR+TV+D +E + NRF+LV++A++RARQ+ G PL+ N DK TV+ALREI Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQL-ANGVPPLIENTNSEDKPTVMALREIAARK 59 Query: 59 INNQILD 65 IN++++D Sbjct: 60 INSKMID 66 >UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 Tax=Proteobacteria RepID=RPOZ_CAUSK Length = 119 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 33/64 (51%), Positives = 46/64 (71%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D VEK+ NRF LVL++A RAR + G LV +NDK V+ALREI + +++ Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAS-LLVDRDNDKNPVVALREIADDVVD 59 Query: 61 NQIL 64 ++ L Sbjct: 60 HEGL 63 >UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 Tax=Proteobacteria RepID=RPOZ_RHOCS Length = 142 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 11/91 (12%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLI 59 MARVTV+D VEK+ NRF+LV++AA+RAR + G PL V +NDK V+ALREI + + Sbjct: 1 MARVTVEDCVEKVPNRFELVMMAAQRARDIAAGS--PLSVDRDNDKNPVVALREIADETV 58 Query: 60 N-----NQILDVRER---QEQQEQEAAELQA 82 N ++ +R Q++ E+E EL A Sbjct: 59 TLETLRNSLIKGHQRVPEQDEPEEEIVELMA 89 >UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 Tax=Rhodobacterales RepID=RPOZ_PARDP Length = 118 Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/70 (51%), Positives = 49/70 (70%), Gaps = 5/70 (7%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLI 59 MARVTV+D V+K+ NRFDLV++AA RAR++ G PL V +NDK V++LREI + Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREIAAGS--PLTVDRDNDKNPVVSLREIADE-- 56 Query: 60 NNQILDVRER 69 + D+RER Sbjct: 57 TQPVDDLRER 66 >UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Tax=cellular organisms RepID=RPOZ_ERYLH Length = 114 Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRFDLVL+AA+RAR++ GG + + + DK V+ALREI E I Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAQRAREIS-GGAEMTIDRDRDKNPVVALREIAEQTIK 59 Query: 61 NQIL 64 + L Sbjct: 60 PKDL 63 >UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RPOZ_HYPNA Length = 116 Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 15/100 (15%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREI----- 54 MARVTV+D ++K+ NRF+LVL+AA RAR ++ G PL + +NDK V++LREI Sbjct: 1 MARVTVEDCIQKVPNRFELVLLAAHRARMIREGS--PLTIDRDNDKDPVVSLREIAETSI 58 Query: 55 -----EEGLINNQILDVRERQE-QQEQEAAELQAVTAIAE 88 +E LI+N + D+R +E ++E + LQA A E Sbjct: 59 DLKVVKEALISN-LQDIRPGEENEREADRVALQAAPAATE 97 >UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_BARBK Length = 132 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI 54 MARVTV+D ++K+ NRF+LVL+A RARQ+ G + V +NDK V+ALREI Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQ-ITVSRDNDKNPVVALREI 53 >UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodospirillaceae RepID=RPOZ_RHORT Length = 138 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 32/60 (53%), Positives = 42/60 (70%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V KI NRF+LVLVA +RAR + G V +NDK V++LREI +G ++ Sbjct: 1 MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSA-LTVDRDNDKNPVVSLREIADGTVD 59 >UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 Tax=Alphaproteobacteria RepID=RPOZ_PARL1 Length = 141 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/91 (42%), Positives = 54/91 (59%), Gaps = 7/91 (7%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI------ 54 MARVTV+D V+K+ NRF+LVL+A RAR M G + V +NDK V+ALREI Sbjct: 1 MARVTVEDCVDKVPNRFELVLLAGHRARAMSAGAE-LTVDRDNDKNPVVALREIADRTIM 59 Query: 55 EEGLINNQILDVRERQEQQEQEAAELQAVTA 85 E L I ++ R E +E E ++Q + + Sbjct: 60 PEDLREELIGSMQSRVETEEPEVEQMQLLMS 90 >UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSF8_9PROT Length = 121 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/65 (50%), Positives = 44/65 (67%), Gaps = 3/65 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLI 59 MARVTV+D ++K+ NRFDLVL+AA RAR + G P+ V E DK V+ALRE+ + I Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARLIAAGS--PVEVERERDKNPVVALRELADDKI 58 Query: 60 NNQIL 64 + L Sbjct: 59 TAKAL 63 >UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Tax=Proteobacteria RepID=RPOZ_MARMM Length = 123 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/56 (55%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEE 56 MARVTV+D +EKI NRF LVL+AA RAR + G + + +NDK V+ALREI + Sbjct: 1 MARVTVEDCIEKIPNRFRLVLMAAHRARNIS-AGSELTIDRDNDKNPVVALREIAD 55 >UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Tax=Acetobacteraceae RepID=RPOZ_ACICJ Length = 136 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E+I NRF+LVL+AA+RAR + G + +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIEQIPNRFELVLLAAQRARNLSRGAS-ITIDRDNDKNPVVALREIADSTVD 59 >UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobacteria RepID=A8TKF0_9PROT Length = 145 Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + +I NRFDLV+ AA+RAR + G V +NDK V++LREI + +N Sbjct: 1 MARVTVEDCIVQIPNRFDLVMAAAQRARDISAGSA-ITVDRDNDKDPVVSLREIADQTVN 59 Query: 61 NQIL 64 +L Sbjct: 60 AAVL 63 >UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Tax=Betaproteobacteria RepID=RPOZ_NITEC Length = 67 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ I NRF++ L A RARQ+ VG P++ DK VIALRE+ + N Sbjct: 1 MARITVEDCLKVIPNRFNMTLAATVRARQISVGST-PMIDAGRDKPIVIALRELAQKKYN 59 Query: 61 NQILD 65 IL+ Sbjct: 60 ENILN 64 >UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 Tax=Proteobacteria RepID=RPOZ_BURM1 Length = 67 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +++I NRF+L L A RARQ+ G P + E DK TV+ALREI G + Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQL-AQGHTPKI-ESRDKPTVVALREIAAGQVG 58 Query: 61 NQIL 64 ++L Sbjct: 59 LEML 62 >UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Tax=Candidatus Pelagibacter RepID=RPOZ_PELUB Length = 180 Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/54 (51%), Positives = 40/54 (74%), Gaps = 1/54 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI 54 MARVTV+D ++K+ + ++LVLVA RA Q+ G +P + +NDK TVI+LREI Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERAVQLN-SGLEPTLDRDNDKNTVISLREI 53 >UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Tax=Bdellovibrio bacteriovorus RepID=RPOZ_BDEBA Length = 79 Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF LVL+ A+RA+Q+ + G + V ++K V +LRE+ G + Sbjct: 1 MARVTVEDCLEKVPNRFALVLMVAKRAKQL-LKGAEATVSTRSNKYIVSSLREVAMGNVG 59 Query: 61 NQ-ILDVRERQEQQEQE 76 Q LD E Q E++ Sbjct: 60 YQDSLDANEAIRQIEKD 76 >UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Tax=Cystobacterineae RepID=RPOZ_ANADF Length = 88 Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 MARVTV+D + + NRF LVL+A +R RQ+ G + PL +K V+ALREI G Sbjct: 1 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGAR-PLQGHAKNKAPVVALREIATG 56 >UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 Tax=Gammaproteobacteria RepID=RPOZ_FRAT1 Length = 72 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/66 (46%), Positives = 46/66 (69%), Gaps = 2/66 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQ-MQVGGKDPLVPEENDKTTVIALREIEEGLI 59 MARVTV+D ++K+ RFDLV++A+ RA + ++ G + + E+ +K TV+ALREI E I Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60 Query: 60 N-NQIL 64 QIL Sbjct: 61 TPEQIL 66 >UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Tax=Desulfovibrionales RepID=RPOZ_DESMR Length = 74 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 2/57 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 MAR+TV+D +EKI NRF +V +A +R Q + G DPLV E +K V ALREI G Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYR-EGYDPLV-ECKNKEVVTALREIAAG 55 >UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Tax=canis group RepID=RPOZ_EHRCJ Length = 138 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI 54 MAR+TV++ + + N+F LV++A++RA + G P++ +N K TVIAL+EI Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGAC-PVIKHKNGKNTVIALKEI 53 >UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Tax=Syntrophus aciditrophicus SB RepID=RPOZ_SYNAS Length = 91 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 40/56 (71%), Gaps = 1/56 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEE 56 MAR+TV+DA++ GNRF LVL+A +R++Q+ G + PL N++ V ALREI + Sbjct: 1 MARITVEDALKVAGNRFALVLLAVQRSKQLLRGAR-PLTNVRNNREIVAALREIAD 55 >UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=C0GLF9_9DELT Length = 71 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 2/57 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 MAR+TV+D +EK+ NRF LV ++ RR +Q + G K PLV E +K V +LREI G Sbjct: 1 MARITVEDCLEKVNNRFLLVQMSVRRIQQYREGYK-PLV-ESKNKDVVTSLREIAAG 55 >UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025H8_SOLUE Length = 85 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 61 A T+ D E+ RF ++VAA+RARQ+Q GG P++P + K TVIA+ E+ GL+ Sbjct: 10 AHCTLPDDPEQSTYRF--IIVAAKRARQLQ-GGARPVLPTSSKKPTVIAMEEVRRGLVKY 66 Query: 62 QI 63 ++ Sbjct: 67 EL 68 >UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4R0_9DELT Length = 74 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 2/57 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 MAR+TV+D +EKI NRF +V +A +R Q + G +PLV E +K V ALREI G Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYR-EGYEPLV-ECKNKEVVTALREIAAG 55 >UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Tax=Deltaproteobacteria RepID=RPOZ_SYNFM Length = 121 Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 2/60 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVT++D ++++ +RF LV +A RR Q++ GG PL E +K V+ALREI G + Sbjct: 1 MARVTIEDCLKEVDSRFTLVHLAVRRVLQLR-GGAPPLT-EVRNKEVVLALREIAAGKVT 58 >UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRJ6_BLOFL Length = 60 Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 34/51 (66%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 VE+I +RFDL+LVA++ AR +Q + K TVIAL+E+E+ +IN Sbjct: 7 VEEINSRFDLILVASKYARSIQQKENSIQLSSCKHKCTVIALQELEKSMIN 57 >UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 Tax=Proteobacteria RepID=RPOZ_DESVH Length = 77 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/79 (41%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++I NRF LV +A +R +Q + G +PLV +N K V ALREI G + Sbjct: 1 MARITVEDCQKRIDNRFLLVQMAIKRVQQYR-EGYEPLVDSKN-KEVVTALREIAAGKVM 58 Query: 61 NQILDVRERQEQQEQEAAE 79 + L + E +E AE Sbjct: 59 PEDLALYRPAEGEEMPVAE 77 >UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=Q1NT55_9DELT Length = 99 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 4/62 (6%) Query: 1 MARVTVQDAVEKIG--NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 MAR+TV+D +++IG NRF L+ +A R +Q + G + P +K V ALREI G Sbjct: 1 MARITVEDCLQQIGNENRFALIHLAVERVKQHRSGAQFP--ERCKNKEIVCALREIAGGT 58 Query: 59 IN 60 +N Sbjct: 59 VN 60 >UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 Tax=Clostridia RepID=RPOZ_CLOP1 Length = 70 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 41/60 (68%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ D ++++ +R+ LV+++A+RARQ+ + G + V E++K IA+ EI+EG +N Sbjct: 5 MINPSIVDLLKRVEDRYSLVILSAKRARQI-IDGAETFVDVESNKPLTIAINEIDEGFVN 63 >UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AN64_DESPS Length = 103 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 4/59 (6%) Query: 1 MARVTVQDAVEKIG--NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 MAR+TV+D ++++G NRF+L+ +A +R Q + G +P + E +K V LREI G Sbjct: 17 MARITVEDCLDQVGKDNRFNLIHLAVKRIHQHRQG--EPFLAGERNKEVVNTLREIAAG 73 >UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Tax=Anaplasma RepID=RPOZ_ANAPZ Length = 135 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI 54 GNRF LV++A++RA ++ G LV + DK TV+ALREI Sbjct: 14 GNRFKLVILASQRAHELSSGAA-TLVDRQGDKNTVVALREI 53 >UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WES4_9FIRM Length = 70 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 EK+G+++ LV++AA+RARQ+ V LV +++K IA+ EI +GL+ Sbjct: 13 EKVGSKYGLVIMAAKRARQL-VDHAPALVESKSNKPVSIAMEEIAQGLVT 61 >UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RL26_ACIFE Length = 73 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 35/50 (70%), Gaps = 1/50 (2%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 +K+G+++ LV++A++RARQ+ V LV +++K IAL EI EGL+ Sbjct: 13 DKVGSKYALVIMASKRARQL-VDHAPALVKCDSNKPVSIALHEIGEGLVT 61 >UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Tax=Clostridium RepID=RPOZ_CLOD6 Length = 88 Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 10/84 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN-DKTTVIALREIEEGLI 59 M + ++ + +EKI NR+ LV ++RAR++ + G++P V + +K +A +E+ G I Sbjct: 1 MLKPSINEVLEKIDNRYYLVGTVSKRARKL-IDGEEPYVSNKTKEKPVCVATKEVASGKI 59 Query: 60 NNQILD--------VRERQEQQEQ 75 ++L R EQ +Q Sbjct: 60 TYRLLTEEEIEIEEARHHAEQHQQ 83 >UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Tax=Neorickettsia RepID=RPOZ_NEOSM Length = 128 Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust. Identities = 18/40 (45%), Positives = 30/40 (75%) Query: 15 NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREI 54 +RF+LV++A++RA +Q G + EE+DK+ VIAL+E+ Sbjct: 15 SRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKEL 54 >UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N300_9BACT Length = 90 Score = 38.5 bits (88), Expect = 0.069, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 31/45 (68%) Query: 19 LVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQI 63 L +VAA+RA+Q+ +GG P++ +++ +AL EI EGL++ + Sbjct: 19 LSVVAAKRAKQLAIGGARPMIKCDSENLIDVALLEIAEGLLSYEF 63 >UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUJ4_DESOH Length = 121 Score = 38.5 bits (88), Expect = 0.072, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 ++D + K+ +RF+LV +AA+R RQ++ G + ++ +N+ V+ALREI G I + Sbjct: 1 MEDCLRKVPSRFELVHLAAQRVRQIREGSEYLVISPKNED-IVVALREIAAGKITQE 56 >UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J8_NATTJ Length = 63 Score = 38.1 bits (87), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M V + VE++ +++ LV+ A+RAR++ V G LV ++ K+ +AL+EI+ +N Sbjct: 1 MNEPAVDNLVEQVESKYSLVIAVAKRAREI-VDGSPSLVENKSPKSVTVALKEIDANKLN 59 >UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE51_CLOTS Length = 69 Score = 38.1 bits (87), Expect = 0.089, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 5 TVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 ++ D + KI +++ L + ++RARQ+ + G+ L+ ++ K IA EI EGLI Sbjct: 6 SIVDLMNKIDSKYTLCALVSKRARQI-INGEPSLIQTDSKKPVTIATEEINEGLIT 60 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 ... 116 2e-25 UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 T... 105 5e-22 UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=... 105 6e-22 UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Ta... 103 2e-21 UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Ta... 101 5e-21 UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 T... 101 7e-21 UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Ta... 100 1e-20 UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 T... 100 1e-20 UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subuni... 98 6e-20 UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Ta... 97 1e-19 UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 T... 97 1e-19 UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 T... 94 1e-18 UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 T... 94 1e-18 UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 T... 94 2e-18 UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap ... 93 2e-18 UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 T... 92 5e-18 UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Ta... 90 2e-17 UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 T... 89 3e-17 UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 T... 89 4e-17 UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Ta... 89 4e-17 UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Ta... 89 5e-17 UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Ta... 89 5e-17 UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Ta... 88 1e-16 UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobact... 87 2e-16 UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Ta... 86 3e-16 UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Ta... 86 3e-16 UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 T... 86 4e-16 UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Ta... 86 4e-16 UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Ta... 85 7e-16 UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Ta... 85 8e-16 UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chai... 85 9e-16 UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 T... 84 1e-15 UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 T... 84 2e-15 UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Ta... 83 2e-15 UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Ta... 83 2e-15 UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Ta... 83 3e-15 UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 T... 82 4e-15 UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 T... 82 7e-15 UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Ta... 82 8e-15 UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Ta... 80 1e-14 UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 T... 78 5e-14 UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Ta... 78 8e-14 UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 T... 77 2e-13 UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subuni... 77 2e-13 UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 T... 76 3e-13 UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaprote... 74 1e-12 UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Ta... 74 2e-12 UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 T... 73 3e-12 UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Ta... 70 2e-11 UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 T... 69 4e-11 UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 T... 66 3e-10 UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=... 57 2e-07 Sequences not found previously or not previously below threshold: UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Ta... 65 6e-10 UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 T... 64 1e-09 UniRef50_B0BYC5 DNA-directed RNA polymerase subunit omega n=11 T... 64 1e-09 UniRef50_A8EYA7 DNA-directed RNA polymerase subunit omega n=4 Ta... 64 2e-09 UniRef50_Q5GSP9 DNA-directed RNA polymerase subunit omega n=6 Ta... 59 4e-08 UniRef50_A0Q119 DNA-directed RNA polymerase subunit omega n=25 T... 58 6e-08 UniRef50_C9KKR2 DNA-directed RNA polymerase, omega subunit n=1 T... 58 1e-07 UniRef50_B8CWR9 DNA-directed RNA polymerase, omega subunit n=1 T... 57 2e-07 UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococ... 56 3e-07 UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 T... 55 5e-07 UniRef50_Q3AC15 DNA-directed RNA polymerase subunit omega n=7 Ta... 54 1e-06 UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Ta... 52 5e-06 UniRef50_C7MCK5 DNA-directed RNA polymerase subunit omega n=1 Ta... 52 6e-06 UniRef50_A8MH81 DNA-directed RNA polymerase subunit omega n=2 Ta... 52 7e-06 UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 T... 52 7e-06 UniRef50_B8I2Z7 DNA-directed RNA polymerase subunit omega n=4 Ta... 52 8e-06 UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Ta... 51 1e-05 UniRef50_B2GI83 DNA-directed RNA polymerase omega subunit n=4 Ta... 50 2e-05 UniRef50_C7NHE8 DNA-directed RNA polymerase, omega subunit n=1 T... 50 2e-05 UniRef50_D2PV86 DNA-directed RNA polymerase, omega subunit n=4 T... 50 2e-05 UniRef50_Q38XT9 DNA-directed RNA polymerase subunit omega n=54 T... 50 2e-05 UniRef50_B0TGS4 DNA-directed RNA polymerase subunit omega n=9 Ta... 50 2e-05 UniRef50_A4FBI2 DNA-directed RNA polymerase subunit omega n=6 Ta... 50 3e-05 UniRef50_A4XL85 DNA-directed RNA polymerase, omega subunit n=1 T... 50 3e-05 UniRef50_Q82ZD6 DNA-directed RNA polymerase subunit omega n=44 T... 49 5e-05 UniRef50_A1SJF7 DNA-directed RNA polymerase subunit omega n=5 Ta... 49 5e-05 UniRef50_B9MR33 DNA-directed RNA polymerase, omega subunit n=1 T... 48 1e-04 UniRef50_C0QR95 DNA-directed RNA polymerase subunit omega n=4 Ta... 47 2e-04 UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 T... 47 2e-04 UniRef50_A4X624 DNA-directed RNA polymerase subunit omega n=10 T... 46 3e-04 UniRef50_C9LLL1 DNA-directed RNA polymerase, omega subunit n=1 T... 46 3e-04 UniRef50_A1KIH9 DNA-directed RNA polymerase subunit omega n=30 T... 46 3e-04 UniRef50_A1A0T8 DNA-directed RNA polymerase subunit omega n=79 T... 46 4e-04 UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 T... 46 5e-04 UniRef50_C9RCK7 DNA-directed RNA polymerase, omega subunit n=1 T... 46 5e-04 UniRef50_Q03VH3 DNA-directed RNA polymerase, subunit K/omega n=3... 45 5e-04 UniRef50_A6NUS4 Putative uncharacterized protein n=1 Tax=Bactero... 45 6e-04 UniRef50_C1F1L4 DNA-directed RNA polymerase, omega subunit n=1 T... 45 8e-04 UniRef50_Q2RK30 DNA-directed RNA polymerase subunit omega n=1 Ta... 45 9e-04 UniRef50_B2GD58 DNA-directed RNA polymerase subunit omega n=4 Ta... 44 0.001 UniRef50_C6JAW5 Putative uncharacterized protein n=2 Tax=Clostri... 44 0.001 UniRef50_C2KWT8 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 44 0.002 UniRef50_C7M0V2 DNA-directed RNA polymerase, omega subunit n=1 T... 43 0.002 UniRef50_C9L6A8 DNA-directed RNA polymerase, omega subunit n=3 T... 43 0.002 UniRef50_C7H021 DNA-directed RNA polymerase, omega subunit n=1 T... 43 0.002 UniRef50_B1C5R9 Putative uncharacterized protein n=1 Tax=Anaerof... 43 0.003 UniRef50_Q1AVZ4 DNA-directed RNA polymerase subunit omega n=1 Ta... 43 0.003 UniRef50_C6I0J5 DNA-directed RNA polymerase, omega subunit n=1 T... 43 0.003 UniRef50_A9KPG3 DNA-directed RNA polymerase subunit omega n=7 Ta... 42 0.004 UniRef50_Q820D5 DNA-directed RNA polymerase subunit omega n=5 Ta... 42 0.004 UniRef50_D1VSE9 DNA-directed RNA polymerase, omega subunit n=1 T... 42 0.004 UniRef50_A5ZQ89 Putative uncharacterized protein n=1 Tax=Ruminoc... 42 0.005 UniRef50_C1KWC5 DNA-directed RNA polymerase subunit omega n=17 T... 42 0.006 UniRef50_C0ZG01 DNA-directed RNA polymerase subunit omega n=3 Ta... 42 0.006 UniRef50_C7HU46 DNA-directed RNA polymerase subunit omega (RNA p... 42 0.007 UniRef50_UPI0001C42522 DNA-directed RNA polymerase subunit omega... 41 0.007 UniRef50_C4L5X2 DNA-directed RNA polymerase subunit omega n=8 Ta... 41 0.008 UniRef50_C4Z9X7 DNA-directed RNA polymerase subunit omega n=4 Ta... 41 0.008 UniRef50_UPI0001C31DAD DNA-directed RNA polymerase, omega subuni... 41 0.009 UniRef50_A8FMX9 DNA-directed RNA polymerase subunit omega n=27 T... 41 0.011 UniRef50_O66570 DNA-directed RNA polymerase subunit omega n=1 Ta... 41 0.011 UniRef50_A6DHN4 Phosphoribosylaminoimidazole-succinocarboxamide ... 41 0.011 UniRef50_A3EVJ3 Putative DNA-directed RNA polymerase, omega subu... 41 0.013 UniRef50_D0U5Z1 DNA-directed RNA polymerase omega subunit n=1 Ta... 40 0.019 UniRef50_Q1IK23 DNA-directed RNA polymerase, omega subunit n=1 T... 40 0.023 UniRef50_A2RN34 DNA-directed RNA polymerase subunit omega n=72 T... 40 0.032 UniRef50_C8WW73 DNA-directed RNA polymerase, omega subunit n=2 T... 39 0.045 UniRef50_C7G7Q1 DNA-directed RNA polymerase, omega subunit n=3 T... 39 0.057 UniRef50_B1HQE0 DNA-directed RNA polymerase subunit omega n=88 T... 39 0.061 UniRef50_C5EUH6 DNA-directed RNA polymerase n=6 Tax=Firmicutes R... 38 0.066 >UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 Tax=Gammaproteobacteria RepID=RPOZ_COLP3 Length = 95 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 60/91 (65%), Positives = 73/91 (80%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+K+GNRFDLVLVA+RRARQ+ GGKDPLV ENDK TVIALREIE GLI Sbjct: 1 MARVTVEDAVDKVGNRFDLVLVASRRARQIATGGKDPLVDVENDKPTVIALREIEAGLIT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 I++ +R +Q +Q+ AEL AV AI G++ Sbjct: 61 TDIMNTSDRAQQIQQDTAELDAVAAIVGGQQ 91 >UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 Tax=Proteobacteria RepID=RPOZ_TERTT Length = 93 Score = 105 bits (262), Expect = 5e-22, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 55/69 (79%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V +RARQ+ V GK P+VPEENDK TVIALREIEEG I+ Sbjct: 1 MARITVEDCLDHVDNRFELVIVGTKRARQLAVQGKTPMVPEENDKPTVIALREIEEGFID 60 Query: 61 NQILDVRER 69 ILD ++ Sbjct: 61 ASILDEKDE 69 >UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYJ9_9BACT Length = 107 Score = 105 bits (261), Expect = 6e-22, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L++V+ +RARQ+ GGK+ + ENDK TV+ALREI EG IN Sbjct: 1 MARVTVEDCLENVDNRFELIMVSTKRARQLATGGKEAHIEWENDKCTVVALREIAEGFIN 60 Query: 61 NQILDVRERQEQQEQEAAELQAV 83 ILD + QQ E Q V Sbjct: 61 ASILDDHDEINQQFTEVPADQDV 83 >UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Tax=Proteobacteria RepID=RPOZ_HALHL Length = 123 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL A+RARQ+ G +PLV ENDK TV+ALREI G + Sbjct: 1 MARVTVEDCLDNVDNRFELVLAGAKRARQLAKG-IEPLVDWENDKPTVVALREIAAGHVT 59 Query: 61 NQILDVRERQ 70 ++IL E Sbjct: 60 SEILTSTEES 69 >UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=RPOZ_VESOH Length = 110 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 41/84 (48%), Positives = 57/84 (67%), Gaps = 1/84 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL+AA+RA Q+ GG PL+ DK TV+ALREIE GLI+ Sbjct: 1 MARVTVEDCLDHVENRFELVLIAAKRAHQLSSGGYKPLLNAGKDKPTVVALREIEAGLID 60 Query: 61 NQIL-DVRERQEQQEQEAAELQAV 83 + IL ++ EQ + L +V Sbjct: 61 SSILSEIYVIDEQLSAQQKVLDSV 84 >UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_PSEMY Length = 87 Score = 101 bits (252), Expect = 7e-21, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 55/73 (75%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LV++A +R+RQ+ GGK+P V ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVAWENDKPTVVALREIAAGLVD 60 Query: 61 NQILDVRERQEQQ 73 +++ + E++ Sbjct: 61 YEVVAQEDIVEEE 73 >UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Tax=Pseudomonas RepID=RPOZ_PSE14 Length = 87 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 53/73 (72%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+LV+++ +RARQ+ GGK+P + ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 60 Query: 61 NQILDVRERQEQQ 73 ++ E E + Sbjct: 61 YAVIAEAEIVEDE 73 >UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 Tax=Proteobacteria RepID=RPOZ_PSEA6 Length = 90 Score = 100 bits (249), Expect = 1e-20, Method: Composition-based stats. Identities = 49/90 (54%), Positives = 63/90 (70%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+KIGNRFDLVLVAARRARQ+ + GK V DK TV+ALREIEEG + Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQLAIEGKVAHVSVGTDKPTVVALREIEEGHVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGR 90 LD ++Q Q+ A+ ++V I + + Sbjct: 61 ASTLDAENLRDQHAQDQAQFESVANILQEQ 90 >UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E105D0 Length = 89 Score = 98.5 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 51/86 (59%), Positives = 63/86 (73%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAVE+IGNRFDLVLVAA+RARQ+ GK+P+V NDK TV+ALREIE+ L+ Sbjct: 1 MARVTVEDAVEQIGNRFDLVLVAAKRARQIATEGKEPMVDMGNDKPTVVALREIEQQLVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAI 86 L+ E EQ + E AE +V I Sbjct: 61 ADSLEAAEIAEQHQAEQAEFASVANI 86 >UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Tax=Gammaproteobacteria RepID=RPOZ_SACD2 Length = 90 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 56/87 (64%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V ++RARQ+ GK+PLV ENDK TVIALREIE GLI+ Sbjct: 1 MARITVEDCLDYVDNRFELVIVGSKRARQIATQGKEPLVAPENDKPTVIALREIELGLID 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIA 87 + L + + + + + Sbjct: 61 DAFLAATDAEPVEHFAEPSEENADNLY 87 >UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJB3_9GAMM Length = 91 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 1/75 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF+LVL+AARRAR + GK+P V E+NDK TVIALREI EGL+ Sbjct: 1 MARVTVEDCLEKVDNRFELVLMAARRARHI-AHGKEPRVSEDNDKPTVIALREIAEGLVG 59 Query: 61 NQILDVRERQEQQEQ 75 ++ D + + Q++ Sbjct: 60 TEVFDEHDERPQKQM 74 >UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_BARBK Length = 132 Score = 94.3 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRF+LVL+A RARQ+ G + V +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQ-ITVSRDNDKNPVVALREIADETLS 59 Query: 61 NQILDVRE-RQEQQEQEAAELQAVTA 85 L Q+ E E +AVT Sbjct: 60 PADLKEDLIHSLQKHVEVDEPEAVTE 85 >UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 Tax=Proteobacteria RepID=RPOZ_ALHEH Length = 107 Score = 93.9 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + + NRF LVLV ++RARQ+ G + V +NDK TV+ALREI +G + Sbjct: 1 MARVTVEDCLTNMDNRFQLVLVGSKRARQLANG-AEAHVDWDNDKPTVVALREIADGHVG 59 Query: 61 NQILDVR-ERQEQQEQEAAELQAVTAIAE 88 +IL+ + E E EA+ L A Sbjct: 60 REILEEQPEPVLDFEAEASALMEEEAAKG 88 >UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 Tax=Proteobacteria RepID=RPOZ_CHRSD Length = 83 Score = 93.9 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 35/66 (53%), Positives = 49/66 (74%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF LV+VA +R+RQ+ G +D +P ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD 60 Query: 61 NQILDV 66 IL+ Sbjct: 61 RSILNE 66 >UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap omegasubunit) (Transcriptase subunit omega) (Rna polymerase omega subunit) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNE4_9RICK Length = 151 Score = 93.1 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 61/100 (61%), Gaps = 11/100 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + N++DLV++A R Q+ G K P+V E+NDK TV++LREI + L++ Sbjct: 1 MARVTVEDCLEVVDNQYDLVILAKERTLQIGAGDK-PMVSEDNDKKTVLSLREIGDKLLD 59 Query: 61 NQILDVR----------ERQEQQEQEAAELQAVTAIAEGR 90 + L+ + + EQ+E +A E A I +G Sbjct: 60 QKTLETQTVDRAREHPEDAMEQEEYDAPEGDAFEEIYKGE 99 >UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 Tax=Hyphomicrobiaceae RepID=C6QAV6_9RHIZ Length = 152 Score = 92.0 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 53/86 (61%), Gaps = 2/86 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+KI NRF+LVL+AA RAR + G + ++DK VIALREI E +++ Sbjct: 1 MARVTVEDCVDKIPNRFELVLLAAHRARAITNGSA-ITIAPDDDKNPVIALREIAEKMLS 59 Query: 61 NQIL-DVRERQEQQEQEAAELQAVTA 85 + + Q+ E E +AV A Sbjct: 60 PDDMRETLISSIQKNTEVDEPEAVAA 85 >UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Tax=cellular organisms RepID=RPOZ_ERYLH Length = 114 Score = 90.0 bits (222), Expect = 2e-17, Method: Composition-based stats. Identities = 34/66 (51%), Positives = 46/66 (69%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRFDLVL+AA+RAR++ GG + + + DK V+ALREI E I Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAQRAREIS-GGAEMTIDRDRDKNPVVALREIAEQTIK 59 Query: 61 NQILDV 66 + L Sbjct: 60 PKDLQE 65 >UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 Tax=Alphaproteobacteria RepID=RPOZ_PARL1 Length = 141 Score = 89.3 bits (220), Expect = 3e-17, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 55/91 (60%), Gaps = 7/91 (7%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRF+LVL+A RAR M G + V +NDK V+ALREI + I Sbjct: 1 MARVTVEDCVDKVPNRFELVLLAGHRARAMSAG-AELTVDRDNDKNPVVALREIADRTIM 59 Query: 61 NQIL------DVRERQEQQEQEAAELQAVTA 85 + L ++ R E +E E ++Q + + Sbjct: 60 PEDLREELIGSMQSRVETEEPEVEQMQLLMS 90 >UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 Tax=Proteobacteria RepID=RPOZ_RHOCS Length = 142 Score = 89.3 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D VEK+ NRF+LV++AA+RAR + G V +NDK V+ALREI + + Sbjct: 1 MARVTVEDCVEKVPNRFELVMMAAQRARDIAAGS-PLSVDRDNDKNPVVALREIADETVT 59 Query: 61 NQILDVR--------ERQEQQEQEAAELQAVTAI 86 + L Q++ E+E EL A Sbjct: 60 LETLRNSLIKGHQRVPEQDEPEEEIVELMAGENA 93 >UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Tax=Acidithiobacillus ferrooxidans RepID=RPOZ_ACIF2 Length = 91 Score = 88.9 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 37/67 (55%), Positives = 46/67 (68%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L LVAARRARQ+ G P V DK TVIALRE+ G ++ Sbjct: 1 MARVTVEDCLEHVDNRFELTLVAARRARQLASGAA-PEVEPGRDKNTVIALREVAAGKVS 59 Query: 61 NQILDVR 67 ILD + Sbjct: 60 RAILDEQ 66 >UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2G6_9PROT Length = 87 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 37/78 (47%), Positives = 56/78 (71%), Gaps = 1/78 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + NRF++VL+AARRARQ+QVG ++ E DK +V ALRE+ EG ++ Sbjct: 1 MARVTVEDCISYYPNRFEMVLLAARRARQIQVGM-PLMMETEGDKPSVSALREMGEGFVS 59 Query: 61 NQILDVRERQEQQEQEAA 78 ++L ++ Q ++ Q+AA Sbjct: 60 WEVLFEQDDQLRRRQQAA 77 >UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Tax=Coxiella burnetii RepID=RPOZ_COXBN Length = 97 Score = 88.9 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 42/85 (49%), Positives = 56/85 (65%), Gaps = 5/85 (5%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRFDLVL AA+RA +++GG +P+VP +NDK V+ALREI G Sbjct: 1 MARVTVEDCLEHVENRFDLVLKAAKRAHILELGGAEPMVPRDNDKPAVLALREIAAGY-- 58 Query: 61 NQILDVRERQEQQEQEAAELQAVTA 85 RE QEQ+ +E + V A Sbjct: 59 ---DVTREGQEQETEEVDVGRNVLA 80 >UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Tax=Acetobacteraceae RepID=RPOZ_ACICJ Length = 136 Score = 87.7 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 31/65 (47%), Positives = 45/65 (69%), Gaps = 1/65 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E+I NRF+LVL+AA+RAR + G + +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIEQIPNRFELVLLAAQRARNLSRGAS-ITIDRDNDKNPVVALREIADSTVD 59 Query: 61 NQILD 65 L+ Sbjct: 60 FGGLE 64 >UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobacteria RepID=A8TKF0_9PROT Length = 145 Score = 86.6 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + +I NRFDLV+ AA+RAR + G V +NDK V++LREI + +N Sbjct: 1 MARVTVEDCIVQIPNRFDLVMAAAQRARDISAGSA-ITVDRDNDKDPVVSLREIADQTVN 59 Query: 61 NQILDVRE-RQEQQEQEAAELQ 81 +L + Q+ E E + Sbjct: 60 AAVLQESLIKGLQKHVEVDEPE 81 >UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Tax=Proteobacteria RepID=RPOZ_MARMM Length = 123 Score = 86.2 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EKI NRF LVL+AA RAR + G + + +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIEKIPNRFRLVLMAAHRARNISAGS-ELTIDRDNDKNPVVALREIADETLD 59 Query: 61 NQIL 64 L Sbjct: 60 MDSL 63 >UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodospirillaceae RepID=RPOZ_RHORT Length = 138 Score = 85.8 bits (211), Expect = 3e-16, Method: Composition-based stats. Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V KI NRF+LVLVA +RAR + G V +NDK V++LREI +G ++ Sbjct: 1 MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSA-LTVDRDNDKNPVVSLREIADGTVD 59 Query: 61 NQILDVRERQ-EQQEQEAAELQ 81 L Q Q+ E E + Sbjct: 60 IPNLKEAVIQGLQKHVEIDEPE 81 >UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 Tax=Proteobacteria RepID=RPOZ_CAUSK Length = 119 Score = 85.8 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 33/67 (49%), Positives = 47/67 (70%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D VEK+ NRF LVL++A RAR + G LV +NDK V+ALREI + +++ Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAS-LLVDRDNDKNPVVALREIADDVVD 59 Query: 61 NQILDVR 67 ++ L + Sbjct: 60 HEGLREQ 66 >UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Tax=Bdellovibrio bacteriovorus RepID=RPOZ_BDEBA Length = 79 Score = 85.8 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 49/77 (63%), Gaps = 2/77 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF LVL+ A+RA+Q+ + G + V ++K V +LRE+ G + Sbjct: 1 MARVTVEDCLEKVPNRFALVLMVAKRAKQL-LKGAEATVSTRSNKYIVSSLREVAMGNVG 59 Query: 61 NQI-LDVRERQEQQEQE 76 Q LD E Q E++ Sbjct: 60 YQDSLDANEAIRQIEKD 76 >UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Tax=Betaproteobacteria RepID=RPOZ_NITEC Length = 67 Score = 85.0 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ I NRF++ L A RARQ+ VG P++ DK VIALRE+ + N Sbjct: 1 MARITVEDCLKVIPNRFNMTLAATVRARQISVGS-TPMIDAGRDKPIVIALRELAQKKYN 59 Query: 61 NQILDV 66 IL+ Sbjct: 60 ENILNT 65 >UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Tax=Magnetococcus sp. MC-1 RepID=RPOZ_MAGSM Length = 121 Score = 84.6 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV D V+ + NRF+LV++AA+RARQ+ G +P V + DK TV+ALREI E +N Sbjct: 1 MARVTVDDCVQHVSNRFELVILAAKRARQL-AKGAEPEVSVDRDKNTVVALREIAESKLN 59 Query: 61 NQIL 64 L Sbjct: 60 MDDL 63 >UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AN64_DESPS Length = 103 Score = 84.6 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%) Query: 1 MARVTVQDAVEKI--GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 MAR+TV+D ++++ NRF+L+ +A +R Q + G +P + E +K V LREI G Sbjct: 17 MARITVEDCLDQVGKDNRFNLIHLAVKRIHQHRQG--EPFLAGERNKEVVNTLREIAAGK 74 Query: 59 INNQILD 65 + +D Sbjct: 75 VTLANID 81 >UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVX3_HALNC Length = 107 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + KI NRF+LVL+AARRARQ++ G +PLVP +K VIALREI EG I+ Sbjct: 1 MARVTVEDCLVKIPNRFELVLMAARRARQIEQG-AEPLVPMGKEKPVVIALREIGEGKID 59 Query: 61 NQILDV 66 +D Sbjct: 60 QARIDE 65 >UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 Tax=Proteobacteria RepID=RPOZ_DESVH Length = 77 Score = 83.9 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 2/79 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++I NRF LV +A +R +Q + G +PLV +K V ALREI G + Sbjct: 1 MARITVEDCQKRIDNRFLLVQMAIKRVQQYREG-YEPLVD-SKNKEVVTALREIAAGKVM 58 Query: 61 NQILDVRERQEQQEQEAAE 79 + L + E +E AE Sbjct: 59 PEDLALYRPAEGEEMPVAE 77 >UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Tax=Cystobacterineae RepID=RPOZ_ANADF Length = 88 Score = 83.5 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 1/59 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 MARVTV+D + + NRF LVL+A +R RQ+ G + PL +K V+ALREI G + Sbjct: 1 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGAR-PLQGHAKNKAPVVALREIATGKV 58 >UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Tax=canis group RepID=RPOZ_EHRCJ Length = 138 Score = 83.1 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV++ + + N+F LV++A++RA + G P++ +N K TVIAL+EI ++ Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGAC-PVIKHKNGKNTVIALKEIAAKQLD 59 Query: 61 NQIL 64 L Sbjct: 60 VSSL 63 >UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSF8_9PROT Length = 121 Score = 82.7 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRFDLVL+AA RAR + G V E DK V+ALRE+ + I Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARLIAAGS-PVEVERERDKNPVVALRELADDKIT 59 Query: 61 NQILDV 66 + L Sbjct: 60 AKALTE 65 >UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 Tax=Proteobacteria RepID=RPOZ_BURM1 Length = 67 Score = 82.3 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 31/64 (48%), Positives = 43/64 (67%), Gaps = 2/64 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +++I NRF+L L A RARQ+ G P + E DK TV+ALREI G + Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQG-HTPKI-ESRDKPTVVALREIAAGQVG 58 Query: 61 NQIL 64 ++L Sbjct: 59 LEML 62 >UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 Tax=Xanthomonadaceae RepID=RPOZ_XYLFT Length = 99 Score = 81.6 bits (200), Expect = 7e-15, Method: Composition-based stats. Identities = 33/68 (48%), Positives = 49/68 (72%), Gaps = 3/68 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN--DKTTVIALREIEEGL 58 MAR+TV+D +E + NRF+LV++A++RARQ+ G PL+ N DK TV+ALREI Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANG-VPPLIENTNSEDKPTVMALREIAARK 59 Query: 59 INNQILDV 66 IN++++D Sbjct: 60 INSKMIDE 67 >UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RPOZ_HYPNA Length = 116 Score = 81.6 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 11/98 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRF+LVL+AA RAR ++ G + +NDK V++LREI E I+ Sbjct: 1 MARVTVEDCIQKVPNRFELVLLAAHRARMIREGS-PLTIDRDNDKDPVVSLREIAETSID 59 Query: 61 NQIL---------DVRERQE-QQEQEAAELQAVTAIAE 88 +++ D+R +E ++E + LQA A E Sbjct: 60 LKVVKEALISNLQDIRPGEENEREADRVALQAAPAATE 97 >UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Tax=Candidatus Pelagibacter RepID=RPOZ_PELUB Length = 180 Score = 80.4 bits (197), Expect = 1e-14, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 11/100 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ + ++LVLVA RA Q+ G +P + +NDK TVI+LREI I Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERAVQLNSG-LEPTLDRDNDKNTVISLREIAADTIK 59 Query: 61 NQILD----------VRERQEQQEQEAAELQAVTAIAEGR 90 L V + + + + ++ +G Sbjct: 60 VSDLTDSAIHKLRKHVEQVDDGTDDDEIIGDDFESMYKGE 99 >UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 Tax=Rhodobacterales RepID=RPOZ_PARDP Length = 118 Score = 78.5 bits (192), Expect = 5e-14, Method: Composition-based stats. Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 3/81 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRFDLV++AA RAR++ G V +NDK V++LREI + Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREIAAGS-PLTVDRDNDKNPVVSLREIADE--T 57 Query: 61 NQILDVRERQEQQEQEAAELQ 81 + D+RER + +Q E+ Sbjct: 58 QPVDDLRERMIEAQQTQIEVD 78 >UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Tax=Desulfovibrionales RepID=RPOZ_DESMR Length = 74 Score = 78.1 bits (191), Expect = 8e-14, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EKI NRF +V +A +R Q + G DPLV E +K V ALREI G + Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREG-YDPLV-ECKNKEVVTALREIAAGEVM 58 Query: 61 NQI 63 Sbjct: 59 PAD 61 >UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=C0GLF9_9DELT Length = 71 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 2/62 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EK+ NRF LV ++ RR +Q + G K PLV E +K V +LREI G + Sbjct: 1 MARITVEDCLEKVNNRFLLVQMSVRRIQQYREGYK-PLV-ESKNKDVVTSLREIAAGKVI 58 Query: 61 NQ 62 Sbjct: 59 PS 60 >UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699E3B Length = 75 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 7/74 (9%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQ 72 + NRFDLVLVA +RARQ++ G +PL+P ENDK TV+ALREI +GLI Q L EQ Sbjct: 1 MDNRFDLVLVATKRARQLE-HGVEPLLPWENDKPTVMALREIADGLIAGQDL------EQ 53 Query: 73 QEQEAAELQAVTAI 86 E EA + A + Sbjct: 54 PEDEAMVVDATISA 67 >UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4R0_9DELT Length = 74 Score = 76.2 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EKI NRF +V +A +R Q + G +PLV E +K V ALREI G + Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREG-YEPLV-ECKNKEVVTALREIAAGEVL 58 Query: 61 NQ 62 Sbjct: 59 PS 60 >UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=Q1NT55_9DELT Length = 99 Score = 74.2 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 4/66 (6%) Query: 1 MARVTVQDAVEKI--GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 MAR+TV+D +++I NRF L+ +A R +Q + G + P +K V ALREI G Sbjct: 1 MARITVEDCLQQIGNENRFALIHLAVERVKQHRSGAQFP--ERCKNKEIVCALREIAGGT 58 Query: 59 INNQIL 64 +N + Sbjct: 59 VNFDNI 64 >UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Tax=Syntrophus aciditrophicus SB RepID=RPOZ_SYNAS Length = 91 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 41/59 (69%), Gaps = 1/59 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 MAR+TV+DA++ GNRF LVL+A +R++Q+ G + PL N++ V ALREI + + Sbjct: 1 MARITVEDALKVAGNRFALVLLAVQRSKQLLRGAR-PLTNVRNNREIVAALREIADNKV 58 >UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 Tax=Gammaproteobacteria RepID=RPOZ_FRAT1 Length = 72 Score = 72.7 bits (177), Expect = 3e-12, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQM-QVGGKDPLVPEENDKTTVIALREIEEGLI 59 MARVTV+D ++K+ RFDLV++A+ RA ++ + G + + E+ +K TV+ALREI E I Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60 Query: 60 NNQILDVRERQ 70 + + E + Sbjct: 61 TPEQILRNEIE 71 >UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Tax=Deltaproteobacteria RepID=RPOZ_SYNFM Length = 121 Score = 70.0 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVT++D ++++ +RF LV +A RR Q++ G P + E +K V+ALREI G + Sbjct: 1 MARVTIEDCLKEVDSRFTLVHLAVRRVLQLRGGA--PPLTEVRNKEVVLALREIAAGKVT 58 Query: 61 NQILDVRERQEQQEQEAAELQ 81 + E + + A Q Sbjct: 59 VDNIRRLEEAKALPEPVAVTQ 79 >UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 Tax=Clostridia RepID=RPOZ_CLOP1 Length = 70 Score = 69.2 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ D ++++ +R+ LV+++A+RARQ+ + G + V E++K IA+ EI+EG +N Sbjct: 5 MINPSIVDLLKRVEDRYSLVILSAKRARQI-IDGAETFVDVESNKPLTIAINEIDEGFVN 63 Query: 61 NQILDVR 67 + + + Sbjct: 64 YKDTEEK 70 >UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025H8_SOLUE Length = 85 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 3/62 (4%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 61 A T+ D E+ RF ++VAA+RARQ+Q GG P++P + K TVIA+ E+ GL+ Sbjct: 10 AHCTLPDDPEQSTYRF--IIVAAKRARQLQ-GGARPVLPTSSKKPTVIAMEEVRRGLVKY 66 Query: 62 QI 63 ++ Sbjct: 67 EL 68 >UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Tax=Anaplasma RepID=RPOZ_ANAPZ Length = 135 Score = 65.0 bits (157), Expect = 6e-10, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 GNRF LV++A++RA ++ G LV + DK TV+ALREI ++ + Sbjct: 14 GNRFKLVILASQRAHELSSGAA-TLVDRQGDKNTVVALREIASNQLDLSTV 63 >UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUJ4_DESOH Length = 121 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 7 QDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV 66 +D + K+ +RF+LV +AA+R RQ++ G + ++ +N+ V+ALREI G I + + Sbjct: 2 EDCLRKVPSRFELVHLAAQRVRQIREGSEYLVISPKNE-DIVVALREIAAGKITQENMAA 60 Query: 67 RERQEQQEQEAAELQAVTA 85 + +A E ++ Sbjct: 61 ALASGFFKADAFENDGISE 79 >UniRef50_B0BYC5 DNA-directed RNA polymerase subunit omega n=11 Tax=Rickettsia RepID=RPOZ_RICRO Length = 127 Score = 64.2 bits (155), Expect = 1e-09, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN-DKTTVIALREIEEGLI 59 MAR+T +D + I +RF LV++A R A+ + + + +E DK VIALR I G + Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNHIKKEKLDKPPVIALRRIAAGKV 60 Query: 60 NNQILD------------VRERQEQQEQEAAE--LQAVTAIAEGR 90 + L+ + Q E EA E + + + G Sbjct: 61 SVAQLEQDLINSLRTRTMIEPLVNQDESEAVEEKFEYLPEVYIGE 105 >UniRef50_A8EYA7 DNA-directed RNA polymerase subunit omega n=4 Tax=Rickettsia RepID=RPOZ_RICCK Length = 127 Score = 63.8 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLV-PEENDKTTVIALREIEEGLI 59 MARVT +D + I +RF LV++A R A+ + + E+ DK VIALR I G + Sbjct: 1 MARVTAEDCNKIIPDRFRLVVLATRYAKLLNYKVETSYSKKEKRDKPPVIALRRIAAGKV 60 Query: 60 NNQILD 65 + L+ Sbjct: 61 SVAQLE 66 >UniRef50_Q5GSP9 DNA-directed RNA polymerase subunit omega n=6 Tax=Wolbachia RepID=RPOZ_WOLTR Length = 142 Score = 59.2 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPE--ENDKTTVIALREIEEGL 58 MA ++ E++ NRF L L+A++R + G +P+ + K T+I+L EI E Sbjct: 1 MAESVIEKCTEQVSNRFKLALLASQRTHDLNTGASNPVQSARFKGHKNTIISLYEIAERQ 60 Query: 59 INNQIL 64 ++ L Sbjct: 61 VDTHEL 66 >UniRef50_A0Q119 DNA-directed RNA polymerase subunit omega n=25 Tax=Clostridium RepID=RPOZ_CLONN Length = 73 Score = 58.4 bits (140), Expect = 6e-08, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ D + K+ NR+ LV V +RRARQ+ G + + E+ K A+ E+ G ++ Sbjct: 5 MINPSIVDLLTKVDNRYSLVTVTSRRARQIIDGDEALVNVEDAYKPLTTAIHEVNAGKVS 64 Query: 61 NQIL 64 + L Sbjct: 65 YESL 68 >UniRef50_C9KKR2 DNA-directed RNA polymerase, omega subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKR2_9FIRM Length = 76 Score = 58.1 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + ++K+ +R+ LV++AA+RARQ+ G + + K AL EI EG I Sbjct: 10 MVNPSTDELMKKVDSRYGLVVLAAKRARQLLDGAELKATKAHSTKNVTNALEEIAEGKIT 69 Query: 61 NQI 63 ++ Sbjct: 70 YEL 72 >UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRJ6_BLOFL Length = 60 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 23/51 (45%), Positives = 34/51 (66%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 VE+I +RFDL+LVA++ AR +Q + K TVIAL+E+E+ +IN Sbjct: 7 VEEINSRFDLILVASKYARSIQQKENSIQLSSCKHKCTVIALQELEKSMIN 57 >UniRef50_B8CWR9 DNA-directed RNA polymerase, omega subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWR9_HALOH Length = 70 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 33/54 (61%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQI 63 ++K+ + + LV++A+RRARQ+ VG + + ++ K +L EI G + +I Sbjct: 13 LKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYEI 66 >UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WES4_9FIRM Length = 70 Score = 56.1 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ EK+G+++ LV++AA+RARQ+ V LV +++K IA+ EI +GL+ Sbjct: 3 MIDPSIDYLAEKVGSKYGLVIMAAKRARQL-VDHAPALVESKSNKPVSIAMEEIAQGLVT 61 Query: 61 NQ 62 + Sbjct: 62 AE 63 >UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RL26_ACIFE Length = 73 Score = 55.4 bits (132), Expect = 5e-07, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ +K+G+++ LV++A++RARQ+ V LV +++K IAL EI EGL+ Sbjct: 3 MIDPSIDVLADKVGSKYALVIMASKRARQL-VDHAPALVKCDSNKPVSIALHEIGEGLVT 61 >UniRef50_Q3AC15 DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridia RepID=RPOZ_CARHZ Length = 69 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ ++K +R+ LV+ A+RARQ+ G + ++K IAL EI LI Sbjct: 1 MNQPSLDILMKKADSRYTLVVATAKRARQITAGESS-KLKHISNKPVTIALHEIGNDLIT 59 Query: 61 NQILDVRE 68 Q L + Sbjct: 60 YQRLKSSQ 67 >UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Tax=Clostridium RepID=RPOZ_CLOD6 Length = 88 Score = 52.3 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 44/79 (55%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ + +EKI NR+ LV ++RAR++ G + + + +K +A +E+ G I Sbjct: 1 MLKPSINEVLEKIDNRYYLVGTVSKRARKLIDGEEPYVSNKTKEKPVCVATKEVASGKIT 60 Query: 61 NQILDVRERQEQQEQEAAE 79 ++L E + ++ + AE Sbjct: 61 YRLLTEEEIEIEEARHHAE 79 >UniRef50_C7MCK5 DNA-directed RNA polymerase subunit omega n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCK5_BRAFD Length = 120 Score = 51.9 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD----------PLVPEEN-DKTTVIAL 51 + +E + +++ LVL ++RARQ+ PLV EN +K+ IAL Sbjct: 13 NPPIDRLLETVDSKYALVLYGSQRARQINAYYSQLSEGLLEFVGPLVDVENQEKSLSIAL 72 Query: 52 REIEEGLINNQILDVRERQEQQEQE 76 REI+EGL+ + +D E Q E + Sbjct: 73 REIDEGLLTVREIDEEEYAAQNEPD 97 >UniRef50_A8MH81 DNA-directed RNA polymerase subunit omega n=2 Tax=Alkaliphilus RepID=RPOZ_ALKOO Length = 71 Score = 51.9 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + ++K+ +R+ LV+ AA+RARQ+ G + + K IA +EI E + Sbjct: 1 MLYPPINELLDKVDSRYTLVVAAAKRARQLIDGAVPKIEMPYSKKPVSIATQEIYESYVL 60 Query: 61 NQILDVRERQE 71 + E Sbjct: 61 YTSGEDETDIE 71 >UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE51_CLOTS Length = 69 Score = 51.5 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 ++ D + KI +++ L + ++RARQ+ + G+ L+ ++ K IA EI EGLI + Sbjct: 5 PSIVDLMNKIDSKYTLCALVSKRARQI-INGEPSLIQTDSKKPVTIATEEINEGLITFE 62 >UniRef50_B8I2Z7 DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales RepID=RPOZ_CLOCE Length = 68 Score = 51.5 bits (122), Expect = 8e-06, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + ++K+ +R+ L + AA+RARQ+ G + ++DK IA+ EI E I Sbjct: 1 MIYPSINELMKKVDSRYTLAVEAAKRARQLVDGATK-MAKCDSDKEVTIAINEIAEDKIT 59 Query: 61 N 61 Sbjct: 60 Y 60 >UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Tax=Neorickettsia RepID=RPOZ_NEOSM Length = 128 Score = 50.7 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 34/50 (68%) Query: 15 NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 +RF+LV++A++RA +Q G + EE+DK+ VIAL+E+ ++ + L Sbjct: 15 SRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKL 64 >UniRef50_B2GI83 DNA-directed RNA polymerase omega subunit n=4 Tax=Actinomycetales RepID=B2GI83_KOCRD Length = 156 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEE-NDKTTVIAL 51 V ++K +++ LV+ ARRARQ+ PLV + N+K IA Sbjct: 13 NPPVDRLLDKTDSKYGLVIFGARRARQINAYYSQLHEGLFEYVGPLVDTKLNEKPLSIAF 72 Query: 52 REIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAE 88 REI+EGLI + + + E A Sbjct: 73 REIDEGLIEADHVADAGFTPNGQMVSDEPTATEMFTG 109 >UniRef50_C7NHE8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHE8_KYTSD Length = 141 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 11/97 (11%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD----------PLVPEE-NDKTTVIAL 51 + D ++ + +++ LV+ +A+RARQ+ PLV E +DK IAL Sbjct: 13 NPPIDDLLQHVDSKYALVIYSAKRARQINAYYAQLKEGLLEYVGPLVEAEASDKPLSIAL 72 Query: 52 REIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAE 88 +EI + + A + +A+T + E Sbjct: 73 QEINADKLVRTVGHDIPEVGTPGMPAEQPEAITPVTE 109 >UniRef50_D2PV86 DNA-directed RNA polymerase, omega subunit n=4 Tax=Actinomycetales RepID=D2PV86_9ACTO Length = 104 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 11/71 (15%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVP-EENDKTTVIALREI 54 + D + +++ LVL +A+RARQ+ PLV +K IA+REI Sbjct: 16 IDDLLTHTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVETHVQEKPLSIAMREI 75 Query: 55 EEGLINNQILD 65 +G++ +D Sbjct: 76 NDGVLTCTDID 86 >UniRef50_Q38XT9 DNA-directed RNA polymerase subunit omega n=54 Tax=Lactobacillaceae RepID=RPOZ_LACSS Length = 85 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 38/73 (52%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQI 63 ++ +E + +R+ L ++A++RA Q++ G L ++ KT +A+ EI G + Sbjct: 5 PSIDKLLENVNSRYSLAVLASKRAHQIEAGDLKMLSEYKSPKTVGMAMEEIAAGNVTIDP 64 Query: 64 LDVRERQEQQEQE 76 + ++ ++ + Sbjct: 65 DSLMLEKDAEKMD 77 >UniRef50_B0TGS4 DNA-directed RNA polymerase subunit omega n=9 Tax=Firmicutes RepID=RPOZ_HELMI Length = 69 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ +EK+ +++ LV++AA+RAR + + ++ K IAL EI +G ++ Sbjct: 1 MNQPSLDKLMEKVDSKYTLVVLAAKRARALVEKQAPLVSVAKSAKPVSIALHEIVDGKVS 60 Query: 61 N 61 Sbjct: 61 Y 61 >UniRef50_A4FBI2 DNA-directed RNA polymerase subunit omega n=6 Tax=Actinomycetales RepID=RPOZ_SACEN Length = 97 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 11/70 (15%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD----------PLVPEE-NDKTTVIAL 51 + D +E++ +++ LV+ +A+RARQ+ PLV +K IAL Sbjct: 24 NPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIAL 83 Query: 52 REIEEGLINN 61 REI G++ + Sbjct: 84 REIHAGVLEH 93 >UniRef50_A4XL85 DNA-directed RNA polymerase, omega subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XL85_CALS8 Length = 76 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLINN 61 R + + ++ + N++ L ++ A+RARQ+ + + + E+DK +A+ EI G I+ Sbjct: 4 RPGLDELLQYVDNKYTLSVLVAKRARQLLEQMQKKVDINLESDKYVTMAVNEIASGKISY 63 Query: 62 QILDVRERQEQQE 74 + + ++ E ++ Sbjct: 64 KYIKPVKKNESKK 76 >UniRef50_Q82ZD6 DNA-directed RNA polymerase subunit omega n=44 Tax=Firmicutes RepID=RPOZ_ENTFA Length = 99 Score = 48.8 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 36/59 (61%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 M + ++ ++++ +++ LV++A++RA ++ G + + ++ K+ AL EIE G + Sbjct: 1 MLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV 59 >UniRef50_A1SJF7 DNA-directed RNA polymerase subunit omega n=5 Tax=Actinomycetales RepID=RPOZ_NOCSJ Length = 110 Score = 48.8 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVP-EENDKTTVIAL 51 + + + K +++ LVL +A+RARQ+ PLV +K IAL Sbjct: 13 NPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIAL 72 Query: 52 REIEEGLINNQILD 65 REI E L+ + +D Sbjct: 73 REINEDLLTCEDVD 86 >UniRef50_B9MR33 DNA-directed RNA polymerase, omega subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR33_ANATD Length = 77 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 2/62 (3%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL--VPEENDKTTVIALREIEEGLIN 60 R + + ++ + N++ L ++ A+RARQ+ + + +DK +A+ E+ G I+ Sbjct: 4 RPGLDELLKYVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASGKIS 63 Query: 61 NQ 62 + Sbjct: 64 YK 65 >UniRef50_C0QR95 DNA-directed RNA polymerase subunit omega n=4 Tax=Aquificales RepID=RPOZ_PERMH Length = 68 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND--KTTVIALREIEEG 57 R ++ A++++ NR++LV AA+ A+ + G + V EE K TVI++ EI +G Sbjct: 4 RPLIEQALKRVNNRYELVHAAAKLAKDLYETGAESYVTEEGIPLKKTVISINEIAKG 60 >UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J8_NATTJ Length = 63 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M V + VE++ +++ LV+ A+RAR++ V G LV ++ K+ +AL+EI+ +N Sbjct: 1 MNEPAVDNLVEQVESKYSLVIAVAKRAREI-VDGSPSLVENKSPKSVTVALKEIDANKLN 59 Query: 61 N 61 Sbjct: 60 Y 60 >UniRef50_A4X624 DNA-directed RNA polymerase subunit omega n=10 Tax=Actinobacteria (class) RepID=RPOZ_SALTO Length = 88 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEE-NDKTTVIAL 51 + + +EK +++ LV+ AA+RARQ+ PLV +K IA+ Sbjct: 13 NPPIDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAM 72 Query: 52 REIEEGLINNQILD 65 REI GL+ + D Sbjct: 73 REINGGLLTAEPTD 86 >UniRef50_C9LLL1 DNA-directed RNA polymerase, omega subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLL1_9FIRM Length = 66 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + V+K+ ++ LV +AA RAR++ G L+ ++ KT +AL EI I+ Sbjct: 2 MCYPAIDALVKKVDTKYTLVTLAALRAREL-TDGSPALLDDKGKKTVTVALEEIYHDKIS 60 Query: 61 N 61 Sbjct: 61 Y 61 >UniRef50_A1KIH9 DNA-directed RNA polymerase subunit omega n=30 Tax=Actinomycetales RepID=RPOZ_MYCBP Length = 110 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 11/70 (15%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQ----------VGGKDPLVPEE-NDKTTVIAL 51 + + ++++ +++ LV+ AA+RARQ+ + PLV +K IAL Sbjct: 37 NPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAL 96 Query: 52 REIEEGLINN 61 REI L+ + Sbjct: 97 REIHADLLEH 106 >UniRef50_A1A0T8 DNA-directed RNA polymerase subunit omega n=79 Tax=Actinobacteridae RepID=RPOZ_BIFAA Length = 94 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEEN-DKTTVI 49 +A + D +E +++ L + AA+RARQ+ PLV +N +K I Sbjct: 12 LADPPIDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSI 71 Query: 50 ALREIEEGLINNQI 63 A REI GL+ + Sbjct: 72 AFREINSGLLEETL 85 >UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N300_9BACT Length = 90 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 + I + L +VAA+RA+Q+ +GG P++ +++ +AL EI EGL++ + Sbjct: 11 KMIPDPQILSVVAAKRAKQLAIGGARPMIKCDSENLIDVALLEIAEGLLSYE 62 >UniRef50_C9RCK7 DNA-directed RNA polymerase, omega subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9RCK7_AMMDK Length = 71 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + D ++ NR+ L ++AA++AR++ L+ + K ALR+I EG + Sbjct: 3 MNEPPLDDLLKLTKNRYILAILAAKQARKINEKMNAGLID-DGMKPVSRALRQIAEGKVK 61 >UniRef50_Q03VH3 DNA-directed RNA polymerase, subunit K/omega n=3 Tax=Leuconostoc RepID=Q03VH3_LEUMM Length = 70 Score = 45.3 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 32/56 (57%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 +V +EK+ +R+ L+ + A+RAR++ G E++K+ AL EIE G + Sbjct: 5 PSVDKLLEKVDSRYKLIALGAKRARELDAGLPATQETFESNKSVGQALEEIENGAV 60 >UniRef50_A6NUS4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS4_9BACE Length = 67 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + + + ++ +R+ LV V A+RARQ+ ++ + E DK +AL+E+ EG Sbjct: 2 MLKPAMNELLAQVPSRYMLVNVVAQRARQIASEAEEEGISLE-DKPVTLALQEVAEGKYA 60 Query: 61 NQILDVR 67 Q+ D Sbjct: 61 PQVADEE 67 >UniRef50_C1F1L4 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L4_ACIC5 Length = 75 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 12 KIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQE 71 + + F VLVAARRARQ+Q G + PL+P + K A EI GL+ + R E Sbjct: 6 QFDSHFRYVLVAARRARQLQQGSQ-PLMPGRSAKPHKQAQEEINAGLVGYIRNETPRRVE 64 Query: 72 QQEQEAAELQA 82 +E + Sbjct: 65 LEETVVPRFAS 75 >UniRef50_Q2RK30 DNA-directed RNA polymerase subunit omega n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RPOZ_MOOTA Length = 67 Score = 44.6 bits (104), Expect = 9e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ + ++ G+++ L ++AA+RAR + P+ K IAL EI G I Sbjct: 1 MKQPSLDELEKRAGSKYALAVLAAKRARMLTESQFAAQYPKGT-KPVTIALMEIAAGKIK 59 Query: 61 NQ 62 + Sbjct: 60 YE 61 >UniRef50_B2GD58 DNA-directed RNA polymerase subunit omega n=4 Tax=Lactobacillus RepID=RPOZ_LACF3 Length = 94 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 22/79 (27%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQ---------------------VGGKDPLVPE- 41 +V +E++ +R+ L+++A++RA ++ G K L+ Sbjct: 5 PSVDKLLERVDSRYSLIMLASKRAHEIDKYRIDKWRAAHPDKAGETVSLEGDKPLLLDHY 64 Query: 42 ENDKTTVIALREIEEGLIN 60 +++K+ +AL EIE GL+ Sbjct: 65 DSNKSVGMALEEIEAGLVT 83 >UniRef50_C6JAW5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C6JAW5_9FIRM Length = 119 Score = 43.8 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 2/80 (2%) Query: 7 QDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV 66 D + +R+ LVL A++RARQ+ G K + K +A+ E+ +G + +IL Sbjct: 20 DDTTMSLNSRYSLVLAASKRARQIIAGSKPMVEGAAGKKPLSVAIDELYKGKV--KILAP 77 Query: 67 RERQEQQEQEAAELQAVTAI 86 E E+ ++ AE Q + Sbjct: 78 EEEDEEGTEQTAEAQTEESA 97 >UniRef50_C2KWT8 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KWT8_9FIRM Length = 140 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%) Query: 1 MARVTVQDAVE-----------KIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVI 49 M R T D +E ++ +R+ +V+ +A+RARQ+ G + + EE K + Sbjct: 1 MLRPTYNDLIESMNRNREEGELEVQSRYSVVIASAKRARQLIDGEEPLIKGEEGKKPLSM 60 Query: 50 ALREIEEGLINNQILDVRERQEQQEQEAAE 79 A+ EI L+N + E + E E Sbjct: 61 AIEEISRNLVNVEKGLDYEDEPIILPEKEE 90 >UniRef50_C7M0V2 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0V2_ACIFD Length = 94 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 12/85 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEENDKTTVIALR 52 +++ +E G++F L+ +AARRARQ+ P V + K +A Sbjct: 10 NPPIEELLEHTGSKFVLITLAARRARQINDYRTHLGEGLGAMIPPQVESDVAKPLSLAFE 69 Query: 53 EIEEGLINNQIL--DVRERQEQQEQ 75 EI G+I ++ DV E E + + Sbjct: 70 EIAAGMIVPDVVAEDVTELVEDEAE 94 >UniRef50_C9L6A8 DNA-directed RNA polymerase, omega subunit n=3 Tax=Clostridiales RepID=C9L6A8_RUMHA Length = 89 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%) Query: 8 DAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 D + +R+ +VL ++RARQ+ G K+ +VP K A+ EI +G + Sbjct: 20 DDEPLVTSRYSVVLATSKRARQLIAG-KEAMVPSSGKKPLSTAVEEIYKGKV 70 >UniRef50_C7H021 DNA-directed RNA polymerase, omega subunit n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H021_9FIRM Length = 69 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + +K+ +R+ LV++AA RA+ + V GK L + D+ +A EI+EGLI Sbjct: 1 MLYPSIDELRQKVDSRYTLVMLAALRAKDI-VEGKPKLTNVDVDRPISVAATEIDEGLIT 59 Query: 61 N 61 Sbjct: 60 Y 60 >UniRef50_B1C5R9 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5R9_9FIRM Length = 89 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + +EK+ N++ L ++ A+R+R++ G +P+V E A+ E+ E I Sbjct: 4 MINPPINELLEKVDNKYVLAMLVAKRSREL-FDGDEPMVDEYFVNLITTAVEEVYEDRIG 62 Query: 61 NQILDVRERQ 70 +++ +R+ Sbjct: 63 YYLIEEGDRK 72 >UniRef50_Q1AVZ4 DNA-directed RNA polymerase subunit omega n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RPOZ_RUBXD Length = 106 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQV-----------GGKDPLVPEENDKTTVIALREI 54 +++ ++K+ +R+ LV+ A+RARQ+ G P V + IA+ E+ Sbjct: 7 IEELLDKVDSRYGLVVATAKRARQINEYTATLGLNESLGIPGPQVHTRSQHPLTIAIEEL 66 Query: 55 EEGLINNQILDVRERQEQQEQEAAELQAVTA 85 G + + + EA E Q A Sbjct: 67 RAGKLKVGFREPAREAAEPAGEAPEEQQRAA 97 >UniRef50_C6I0J5 DNA-directed RNA polymerase, omega subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0J5_9BACT Length = 131 Score = 42.6 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQ 70 + I +R+ LV+ AA+R RQ+ G P+ K T I L EI + Sbjct: 14 DVIDSRYRLVIAAAKRTRQIMEGHA-PVGDWPYHKETTIGLAEILSKSVPIITGPAAVVA 72 Query: 71 EQQEQEA 77 EQ+ +EA Sbjct: 73 EQKHKEA 79 >UniRef50_A9KPG3 DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridiales RepID=RPOZ_CLOPH Length = 82 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQE 71 + +R+ +VL A+RARQ+ + G +PL +K IA+ E+ + + D E Sbjct: 25 VNSRYSIVLATAKRARQI-IDGAEPLTESSCNKPLSIAVEELYKSKVKIVSEDDENENE 82 >UniRef50_Q820D5 DNA-directed RNA polymerase subunit omega n=5 Tax=Micrococcineae RepID=RPOZ_TROWT Length = 98 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 12/71 (16%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD-----------PLVPEE-NDKTTVI 49 A + + + G+++ LV+ AA+RARQ+ D PLV + +DK+ + Sbjct: 21 ADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTV 80 Query: 50 ALREIEEGLIN 60 A+REI E ++ Sbjct: 81 AMREIAEDKLD 91 >UniRef50_D1VSE9 DNA-directed RNA polymerase, omega subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSE9_9FIRM Length = 96 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 47/82 (57%), Gaps = 2/82 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ +EK +R++L ++ ++R+R++ V G+ LV + K +AL E+ EG I Sbjct: 1 MNIPSFKELMEKSDSRYELCMLVSKRSRKL-VDGQKALVDTDMKKPVSVALEEVMEGKII 59 Query: 61 N-QILDVRERQEQQEQEAAELQ 81 Q + +E +E+ E EL+ Sbjct: 60 FGQEMSDKEYEEKIAVERLELE 81 >UniRef50_A5ZQ89 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQ89_9FIRM Length = 106 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQ 73 +R+ LVL ++RARQ+ G + + K IA+ E+ +G + E + Sbjct: 27 NSRYSLVLATSKRARQLIAGAEPLVPNTAGKKPLSIAIDELYKGEVKIVAASEAEEDTTK 86 Query: 74 EQEAAELQAVTAIAE 88 Q AE + V I E Sbjct: 87 TQTVAE-ETVENIEE 100 >UniRef50_C1KWC5 DNA-directed RNA polymerase subunit omega n=17 Tax=Bacillales RepID=RPOZ_LISMC Length = 68 Score = 42.3 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPE-ENDKTTVIALREIEEGLI 59 M ++ + + KI +++ LV VAA+RAR MQ+ ++P ++DK AL EI G + Sbjct: 2 MLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKL 61 >UniRef50_C0ZG01 DNA-directed RNA polymerase subunit omega n=3 Tax=Paenibacillaceae RepID=RPOZ_BREBN Length = 68 Score = 42.3 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 38/68 (55%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + EK +++ LV VA++RARQ++ + +V ++ K +AL E + Sbjct: 1 MLYPSIDELTEKAESKYILVTVASKRARQLRENSEVQVVRPKSKKFVGLALEEFISDELV 60 Query: 61 NQILDVRE 68 ++ LD R+ Sbjct: 61 HEFLDGRK 68 >UniRef50_C7HU46 DNA-directed RNA polymerase subunit omega (RNA polymerase omega subunit) n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7HU46_9FIRM Length = 62 Score = 41.9 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ E +R+++ ++AA+RAR++ G D L E DK AL EI EG + Sbjct: 1 MNNPSFKELSEISSSRYEICMMAAKRARRIVNGS-DLLTKEVEDKPVTQALHEIMEGKVE 59 Query: 61 NQI 63 Sbjct: 60 KND 62 >UniRef50_UPI0001C42522 DNA-directed RNA polymerase subunit omega n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42522 Length = 72 Score = 41.5 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD-PLVPEEN-DKTTVIALREIEEGL 58 M ++ ++K+ +++ LV V+A+RAR+++ PLV K +AL EI E Sbjct: 1 MLYPSIDSLMDKLDSKYTLVTVSAKRAREIREDSSRGPLVNRPKAHKPVGMALEEIVEEH 60 Query: 59 INNQILDVRERQ 70 + + + E + Sbjct: 61 LRFERITPVEEE 72 >UniRef50_C4L5X2 DNA-directed RNA polymerase subunit omega n=8 Tax=Bacillales RepID=RPOZ_EXISA Length = 69 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 M ++ I +++ +V VAA+RARQ+Q G + ++ K AL E+ G Sbjct: 1 MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSG 57 >UniRef50_C4Z9X7 DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales RepID=RPOZ_EUBR3 Length = 86 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQ 72 + +R+ +V+ AA+RARQ+ G + + + +K IA+ E+ G + + D + E Sbjct: 25 VNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLSIAVEELYTGAV-RIVSDDEDLNEG 83 Query: 73 QEQ 75 +E Sbjct: 84 EEA 86 >UniRef50_UPI0001C31DAD DNA-directed RNA polymerase, omega subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DAD Length = 86 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIALREIEEGL 58 + + + + V+VAA+RARQ+ P+V + IAL E+ G Sbjct: 21 LAHVDSDYASVVVAAKRARQINSYYHNLGEGTFDEFPPPMVETRSKNYLTIALEEVASGK 80 Query: 59 INN 61 I Sbjct: 81 IKY 83 >UniRef50_A8FMX9 DNA-directed RNA polymerase subunit omega n=27 Tax=Epsilonproteobacteria RepID=RPOZ_CAMJ8 Length = 74 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 9 AVEKIGN-RFDLVLVAARRARQMQVGGKDPLVPEENDKTTV--IALREIEEGLINNQILD 65 A+EK+GN R+ L LV A+RA Q+ G PLV + +K + IAL EI E I + L Sbjct: 12 ALEKMGNDRYRLSLVVAKRAEQLANG-ATPLVDFDKNKNKLADIALYEIAENKITLEGLV 70 Query: 66 VRER 69 R Sbjct: 71 ETNR 74 >UniRef50_O66570 DNA-directed RNA polymerase subunit omega n=1 Tax=Aquifex aeolicus RepID=RPOZ_AQUAE Length = 76 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN--DKTTVIALREIEEGLIN 60 R +++A++++ +R++LV A RR Q+ G+D V E K T A+ +I EG + Sbjct: 4 RPKIEEAMKRVESRYELVHAAVRRTLQLLREGEDFFVQEGGEVHKKTFAAIEDIAEGKVK 63 Query: 61 NQILDVRERQEQQ 73 +++ Sbjct: 64 IIKKKEESGSKEE 76 >UniRef50_A6DHN4 Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN4_9BACT Length = 73 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 9/74 (12%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND---KTTV-----IALR 52 M + +A+E IG++ LV +AA+RA Q+ G PL+ D + V IAL Sbjct: 1 MENSYIANALEVIGDKNVLVNLAAKRASQINKGDH-PLIDTPRDAHNRPLVLSTLEIALI 59 Query: 53 EIEEGLINNQILDV 66 EI EG + + ++ Sbjct: 60 EIAEGKVTFEHIEA 73 >UniRef50_A3EVJ3 Putative DNA-directed RNA polymerase, omega subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EVJ3_9BACT Length = 134 Score = 40.7 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI----NN 61 ++ + I +R+ LV+ AA+RARQ+ G V + K T AL+EI E I Sbjct: 9 IEVTPDIIDSRYRLVIAAAKRARQLMEGA-PVRVEKRYLKETTTALQEIVEKKIPIITGE 67 Query: 62 QILDVRERQEQQEQEAAELQAVTAIAEG 89 + + + + ++ +E A L+ + + G Sbjct: 68 EAVRIEAGRREKLRERARLEERFSYSRG 95 >UniRef50_D0U5Z1 DNA-directed RNA polymerase omega subunit n=1 Tax=uncultured actinobacterium RepID=D0U5Z1_9ACTN Length = 115 Score = 40.3 bits (93), Expect = 0.019, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 11/97 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEENDKTTVIA 50 M ++ +++ ++F LV ++ARRAR++ P V + K I+ Sbjct: 1 MMNPPLESLMKRTLSKFSLVTLSARRAREINSYFNQLGEGLGTMVPPQVSSTSRKPLSIS 60 Query: 51 LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIA 87 EI I + + E + + + +AA L+ Sbjct: 61 FEEIAADKILSVPMRAYE-EPEADADAALLEVAADAV 96 >UniRef50_Q1IK23 DNA-directed RNA polymerase, omega subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IK23_ACIBL Length = 77 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQE-- 71 + + +LVAARRARQ+Q G P + + K+ IA E++ G I I + + E Sbjct: 8 DSNYRYILVAARRARQIQNGAH-PTIDTQTKKSCRIAEEEVKAGNIQWYIPEKKTAAEIA 66 Query: 72 QQEQEAAELQA 82 +++ + A A Sbjct: 67 KEQLDQAIPDA 77 >UniRef50_A2RN34 DNA-directed RNA polymerase subunit omega n=72 Tax=Lactobacillales RepID=RPOZ_LACLM Length = 117 Score = 39.6 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ ++++ +++ LV++ A+RA +++ + P + K T+ AL EI +G + Sbjct: 2 MLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDK-ERPTKEFKAVKRTLQALEEIADGTVK 60 >UniRef50_C8WW73 DNA-directed RNA polymerase, omega subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW73_ALIAD Length = 66 Score = 39.2 bits (90), Expect = 0.045, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 3/68 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGG-KDPLVPEENDKTTVIALREIEEGLI 59 M ++ +E+ +++ LV++AA+RAR++Q P + AL EI +G++ Sbjct: 1 MIYPSIDRLLERCNSKYALVVLAAKRARKLQNETLNQPGASTTRN--VSRALWEIHDGVV 58 Query: 60 NNQILDVR 67 + D Sbjct: 59 RCKNFDGE 66 >UniRef50_C7G7Q1 DNA-directed RNA polymerase, omega subunit n=3 Tax=Bacteria RepID=C7G7Q1_9FIRM Length = 89 Score = 38.8 bits (89), Expect = 0.057, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 27/48 (56%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 + +R+ +V+ AA+RARQ+ G + + K IA+ E+ EG + Sbjct: 33 VNSRYSIVIAAAKRARQIIAGDEPMAEKKVCPKPLSIAVEELYEGKVK 80 >UniRef50_B1HQE0 DNA-directed RNA polymerase subunit omega n=88 Tax=Firmicutes RepID=RPOZ_LYSSC Length = 75 Score = 38.8 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-DPLVPEENDKTTVIALREIEEGLI 59 M +V ++I +++ LV +A++RARQMQ + L + K AL E+ G++ Sbjct: 1 MLYPSVDALKKEIDSKYSLVSLASKRARQMQEEQNTERLHKYVSHKYVGKALEEVAAGVL 60 Query: 60 NNQILDVRERQEQQ 73 D E + Sbjct: 61 TKVSQDESTVYEDE 74 >UniRef50_C5EUH6 DNA-directed RNA polymerase n=6 Tax=Firmicutes RepID=C5EUH6_9FIRM Length = 89 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 14/73 (19%) Query: 1 MARVTVQDAVEKIGN------------RFDLVLVAARRARQMQVGGKDPLVP-EENDKTT 47 M + D ++ + + R+ +V+ A+RRARQ+ +GG+DP+V K Sbjct: 1 MLHPSYTDLIDVVNSDIEPGEQPVVQSRYSIVIAASRRARQI-IGGEDPMVSGAAGKKPL 59 Query: 48 VIALREIEEGLIN 60 IA+ E+ + Sbjct: 60 SIAIDELYHQKVK 72 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 ... 111 5e-24 UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Ta... 103 2e-21 UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=... 102 3e-21 UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 T... 102 4e-21 UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Ta... 101 5e-21 UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 T... 101 1e-20 UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Ta... 99 4e-20 UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 T... 98 6e-20 UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 T... 98 8e-20 UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 T... 98 1e-19 UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Ta... 97 1e-19 UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 T... 96 2e-19 UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subuni... 96 4e-19 UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 T... 95 9e-19 UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 T... 94 2e-18 UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Ta... 92 5e-18 UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Ta... 91 8e-18 UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Ta... 90 2e-17 UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 T... 90 2e-17 UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Ta... 90 3e-17 UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Ta... 90 3e-17 UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobact... 90 3e-17 UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap ... 89 4e-17 UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 T... 88 6e-17 UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 T... 88 9e-17 UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Ta... 88 1e-16 UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chai... 88 1e-16 UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Ta... 87 1e-16 UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Ta... 87 1e-16 UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Ta... 87 2e-16 UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Ta... 87 2e-16 UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 T... 86 4e-16 UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 T... 86 4e-16 UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Ta... 85 7e-16 UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 T... 85 7e-16 UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 T... 85 8e-16 UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Ta... 85 9e-16 UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Ta... 85 1e-15 UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Ta... 83 2e-15 UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Ta... 83 4e-15 UniRef50_B2GI83 DNA-directed RNA polymerase omega subunit n=4 Ta... 82 5e-15 UniRef50_A0Q119 DNA-directed RNA polymerase subunit omega n=25 T... 81 8e-15 UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 T... 81 1e-14 UniRef50_A8MH81 DNA-directed RNA polymerase subunit omega n=2 Ta... 81 1e-14 UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 T... 80 2e-14 UniRef50_C9KKR2 DNA-directed RNA polymerase, omega subunit n=1 T... 80 2e-14 UniRef50_Q3AC15 DNA-directed RNA polymerase subunit omega n=7 Ta... 80 2e-14 UniRef50_B0BYC5 DNA-directed RNA polymerase subunit omega n=11 T... 80 3e-14 UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 T... 80 3e-14 UniRef50_B8CWR9 DNA-directed RNA polymerase, omega subunit n=1 T... 79 4e-14 UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Ta... 79 4e-14 UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Ta... 79 4e-14 UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 T... 79 5e-14 UniRef50_B0TGS4 DNA-directed RNA polymerase subunit omega n=9 Ta... 78 6e-14 UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 T... 78 1e-13 UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Ta... 78 1e-13 UniRef50_C7NHE8 DNA-directed RNA polymerase, omega subunit n=1 T... 77 2e-13 UniRef50_A8EYA7 DNA-directed RNA polymerase subunit omega n=4 Ta... 77 2e-13 UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 T... 76 2e-13 UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 T... 76 3e-13 UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaprote... 76 3e-13 UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococ... 76 5e-13 UniRef50_B8I2Z7 DNA-directed RNA polymerase subunit omega n=4 Ta... 75 6e-13 UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subuni... 75 1e-12 UniRef50_D2PV86 DNA-directed RNA polymerase, omega subunit n=4 T... 75 1e-12 UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 T... 74 1e-12 UniRef50_Q38XT9 DNA-directed RNA polymerase subunit omega n=54 T... 74 2e-12 UniRef50_A4XL85 DNA-directed RNA polymerase, omega subunit n=1 T... 74 2e-12 UniRef50_A1SJF7 DNA-directed RNA polymerase subunit omega n=5 Ta... 73 2e-12 UniRef50_C7MCK5 DNA-directed RNA polymerase subunit omega n=1 Ta... 72 4e-12 UniRef50_B9MR33 DNA-directed RNA polymerase, omega subunit n=1 T... 72 6e-12 UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Ta... 72 6e-12 UniRef50_A4FBI2 DNA-directed RNA polymerase subunit omega n=6 Ta... 71 9e-12 UniRef50_Q82ZD6 DNA-directed RNA polymerase subunit omega n=44 T... 71 9e-12 UniRef50_C9RCK7 DNA-directed RNA polymerase, omega subunit n=1 T... 71 1e-11 UniRef50_C9LLL1 DNA-directed RNA polymerase, omega subunit n=1 T... 70 2e-11 UniRef50_A1A0T8 DNA-directed RNA polymerase subunit omega n=79 T... 70 2e-11 UniRef50_A1KIH9 DNA-directed RNA polymerase subunit omega n=30 T... 70 3e-11 UniRef50_A4X624 DNA-directed RNA polymerase subunit omega n=10 T... 69 5e-11 UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Ta... 68 1e-10 UniRef50_Q5GSP9 DNA-directed RNA polymerase subunit omega n=6 Ta... 66 2e-10 UniRef50_Q2RK30 DNA-directed RNA polymerase subunit omega n=1 Ta... 66 2e-10 UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 T... 66 3e-10 UniRef50_C2KWT8 DNA-directed RNA polymerase n=1 Tax=Oribacterium... 66 3e-10 UniRef50_C1F1L4 DNA-directed RNA polymerase, omega subunit n=1 T... 66 4e-10 UniRef50_B2GD58 DNA-directed RNA polymerase subunit omega n=4 Ta... 65 6e-10 UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 T... 65 8e-10 UniRef50_C7M0V2 DNA-directed RNA polymerase, omega subunit n=1 T... 65 8e-10 UniRef50_Q03VH3 DNA-directed RNA polymerase, subunit K/omega n=3... 64 2e-09 UniRef50_C6JAW5 Putative uncharacterized protein n=2 Tax=Clostri... 64 2e-09 UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 T... 63 3e-09 UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Ta... 61 9e-09 UniRef50_A6NUS4 Putative uncharacterized protein n=1 Tax=Bactero... 60 3e-08 UniRef50_C0QR95 DNA-directed RNA polymerase subunit omega n=4 Ta... 54 1e-06 UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=... 53 3e-06 Sequences not found previously or not previously below threshold: UniRef50_C4L5X2 DNA-directed RNA polymerase subunit omega n=8 Ta... 66 5e-10 UniRef50_C1KWC5 DNA-directed RNA polymerase subunit omega n=17 T... 63 3e-09 UniRef50_UPI0001C31DAD DNA-directed RNA polymerase, omega subuni... 63 4e-09 UniRef50_B1C5R9 Putative uncharacterized protein n=1 Tax=Anaerof... 62 7e-09 UniRef50_UPI0001C42522 DNA-directed RNA polymerase subunit omega... 62 7e-09 UniRef50_Q1AVZ4 DNA-directed RNA polymerase subunit omega n=1 Ta... 61 1e-08 UniRef50_C0ZG01 DNA-directed RNA polymerase subunit omega n=3 Ta... 61 2e-08 UniRef50_C7H021 DNA-directed RNA polymerase, omega subunit n=1 T... 60 2e-08 UniRef50_D0U5Z1 DNA-directed RNA polymerase omega subunit n=1 Ta... 60 2e-08 UniRef50_Q820D5 DNA-directed RNA polymerase subunit omega n=5 Ta... 60 3e-08 UniRef50_C8WW73 DNA-directed RNA polymerase, omega subunit n=2 T... 59 4e-08 UniRef50_C4Z9X7 DNA-directed RNA polymerase subunit omega n=4 Ta... 59 5e-08 UniRef50_A5ZQ89 Putative uncharacterized protein n=1 Tax=Ruminoc... 58 7e-08 UniRef50_A8VRS5 tRNA pseudouridine synthase B n=2 Tax=Bacillus R... 58 1e-07 UniRef50_A7X1G4 DNA-directed RNA polymerase subunit omega n=60 T... 57 1e-07 UniRef50_B9DPL6 DNA-directed RNA polymerase subunit omega n=3 Ta... 57 2e-07 UniRef50_D1VSE9 DNA-directed RNA polymerase, omega subunit n=1 T... 57 2e-07 UniRef50_C5EUH6 DNA-directed RNA polymerase n=6 Tax=Firmicutes R... 56 3e-07 UniRef50_B1HQE0 DNA-directed RNA polymerase subunit omega n=88 T... 56 3e-07 UniRef50_A2RN34 DNA-directed RNA polymerase subunit omega n=72 T... 56 3e-07 UniRef50_C7HU46 DNA-directed RNA polymerase subunit omega (RNA p... 56 3e-07 UniRef50_C9L6A8 DNA-directed RNA polymerase, omega subunit n=3 T... 56 4e-07 UniRef50_A9KPG3 DNA-directed RNA polymerase subunit omega n=7 Ta... 56 4e-07 UniRef50_C7G7Q1 DNA-directed RNA polymerase, omega subunit n=3 T... 55 1e-06 UniRef50_D2NT55 DNA-directed RNA polymerase, subunit K/omega n=2... 54 2e-06 UniRef50_A3EVJ3 Putative DNA-directed RNA polymerase, omega subu... 53 3e-06 UniRef50_C6I0J5 DNA-directed RNA polymerase, omega subunit n=1 T... 50 2e-05 UniRef50_Q2NIH2 DNA-directed RNA polymerase omega chain n=5 Tax=... 50 2e-05 UniRef50_B0G2W0 Putative uncharacterized protein n=3 Tax=Clostri... 50 3e-05 UniRef50_B0S136 DNA-directed RNA polymerase subunit omega n=4 Ta... 48 6e-05 UniRef50_B0P3M1 Putative uncharacterized protein n=4 Tax=Clostri... 48 7e-05 UniRef50_A7VUT9 Putative uncharacterized protein n=1 Tax=Clostri... 48 7e-05 UniRef50_A6DHN4 Phosphoribosylaminoimidazole-succinocarboxamide ... 48 7e-05 UniRef50_A8FMX9 DNA-directed RNA polymerase subunit omega n=27 T... 48 9e-05 UniRef50_B5YF48 DNA-directed RNA polymerase subunit omega n=2 Ta... 48 9e-05 UniRef50_B4DCN8 DNA-directed RNA polymerase, omega subunit n=1 T... 48 1e-04 UniRef50_Q17Y32 DNA-directed RNA polymerase subunit omega n=15 T... 47 1e-04 UniRef50_Q1J1S9 DNA-directed RNA polymerase subunit omega n=3 Ta... 47 2e-04 UniRef50_C2BWI8 DNA-directed RNA polymerase n=1 Tax=Mobiluncus c... 47 2e-04 UniRef50_O66570 DNA-directed RNA polymerase subunit omega n=1 Ta... 46 4e-04 UniRef50_B0PFU3 Putative uncharacterized protein n=1 Tax=Anaerot... 46 4e-04 UniRef50_UPI0001C36ED6 hypothetical protein RflaF_19293 n=1 Tax=... 46 4e-04 UniRef50_B1ZPJ1 DNA-directed RNA polymerase, omega subunit n=5 T... 46 4e-04 UniRef50_Q72ID6 DNA-directed RNA polymerase subunit omega n=4 Ta... 46 5e-04 UniRef50_Q1IK23 DNA-directed RNA polymerase, omega subunit n=1 T... 45 6e-04 UniRef50_B5YJ35 DNA-directed RNA polymerase subunit omega n=1 Ta... 45 6e-04 UniRef50_C7MNJ3 DNA-directed RNA polymerase, omega subunit n=4 T... 45 7e-04 UniRef50_Q04EL5 DNA-directed RNA polymerase subunit omega n=2 Ta... 44 0.001 UniRef50_C1XXM7 DNA-directed RNA polymerase, omega subunit n=2 T... 44 0.001 UniRef50_A6Q312 DNA-directed RNA polymerase subunit omega n=2 Ta... 44 0.002 UniRef50_C3XHT5 Predicted protein n=1 Tax=Helicobacter bilis ATC... 42 0.005 UniRef50_UPI0001744377 hypothetical protein VspiD_07640 n=1 Tax=... 42 0.005 UniRef50_C0EFK9 Putative uncharacterized protein n=1 Tax=Clostri... 41 0.009 UniRef50_B4D5N1 DNA-directed RNA polymerase, omega subunit n=2 T... 41 0.012 UniRef50_C9M8T3 DNA-directed RNA polymerase, omega subunit n=1 T... 41 0.012 UniRef50_Q30SN4 RNA polymerase Rpb6 n=1 Tax=Sulfurimonas denitri... 41 0.014 UniRef50_A5ILC9 DNA-directed RNA polymerase subunit omega n=11 T... 40 0.021 UniRef50_B4U8J2 DNA-directed RNA polymerase, omega subunit n=2 T... 40 0.022 UniRef50_C1SMS5 DNA-directed RNA polymerase, omega subunit n=1 T... 40 0.024 UniRef50_D1Y142 Putative DNA-directed RNA polymerase, omega subu... 39 0.032 UniRef50_B3DV23 DNA-directed RNA polymerase, subunit K/omega n=1... 39 0.037 UniRef50_C1TRJ6 DNA-directed RNA polymerase, omega subunit n=1 T... 39 0.051 UniRef50_B6BNW9 RNA polymerases K / 14 to 18 kDa subunit n=1 Tax... 39 0.052 >UniRef50_Q47UB2 DNA-directed RNA polymerase subunit omega n=265 Tax=Gammaproteobacteria RepID=RPOZ_COLP3 Length = 95 Score = 111 bits (279), Expect = 5e-24, Method: Composition-based stats. Identities = 60/91 (65%), Positives = 73/91 (80%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+K+GNRFDLVLVA+RRARQ+ GGKDPLV ENDK TVIALREIE GLI Sbjct: 1 MARVTVEDAVDKVGNRFDLVLVASRRARQIATGGKDPLVDVENDKPTVIALREIEAGLIT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 I++ +R +Q +Q+ AEL AV AI G++ Sbjct: 61 TDIMNTSDRAQQIQQDTAELDAVAAIVGGQQ 91 >UniRef50_A1WVN4 DNA-directed RNA polymerase subunit omega n=6 Tax=Proteobacteria RepID=RPOZ_HALHL Length = 123 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL A+RARQ+ G +PLV ENDK TV+ALREI G + Sbjct: 1 MARVTVEDCLDNVDNRFELVLAGAKRARQLAKG-IEPLVDWENDKPTVVALREIAAGHVT 59 Query: 61 NQILDVRERQ 70 ++IL E Sbjct: 60 SEILTSTEES 69 >UniRef50_Q2PYJ9 DNA-directed RNA polymerase omega chain n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYJ9_9BACT Length = 107 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 56/83 (67%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L++V+ +RARQ+ GGK+ + ENDK TV+ALREI EG IN Sbjct: 1 MARVTVEDCLENVDNRFELIMVSTKRARQLATGGKEAHIEWENDKCTVVALREIAEGFIN 60 Query: 61 NQILDVRERQEQQEQEAAELQAV 83 ILD + QQ E Q V Sbjct: 61 ASILDDHDEINQQFTEVPADQDV 83 >UniRef50_C5BLF6 DNA-directed RNA polymerase subunit omega n=56 Tax=Proteobacteria RepID=RPOZ_TERTT Length = 93 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 42/69 (60%), Positives = 55/69 (79%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V +RARQ+ V GK P+VPEENDK TVIALREIEEG I+ Sbjct: 1 MARITVEDCLDHVDNRFELVIVGTKRARQLAVQGKTPMVPEENDKPTVIALREIEEGFID 60 Query: 61 NQILDVRER 69 ILD ++ Sbjct: 61 ASILDEKDE 69 >UniRef50_Q48Q16 DNA-directed RNA polymerase subunit omega n=5 Tax=Pseudomonas RepID=RPOZ_PSE14 Length = 87 Score = 101 bits (253), Expect = 5e-21, Method: Composition-based stats. Identities = 36/73 (49%), Positives = 53/73 (72%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+LV+++ +RARQ+ GGK+P + ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGLMD 60 Query: 61 NQILDVRERQEQQ 73 ++ E E + Sbjct: 61 YAVIAEAEIVEDE 73 >UniRef50_A4Y0M0 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_PSEMY Length = 87 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 35/73 (47%), Positives = 55/73 (75%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LV++A +R+RQ+ GGK+P V ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFELVMLATKRSRQLATGGKEPKVAWENDKPTVVALREIAAGLVD 60 Query: 61 NQILDVRERQEQQ 73 +++ + E++ Sbjct: 61 YEVVAQEDIVEEE 73 >UniRef50_Q21EC8 DNA-directed RNA polymerase subunit omega n=8 Tax=Gammaproteobacteria RepID=RPOZ_SACD2 Length = 90 Score = 98.8 bits (245), Expect = 4e-20, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 56/87 (64%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ + NRF+LV+V ++RARQ+ GK+PLV ENDK TVIALREIE GLI+ Sbjct: 1 MARITVEDCLDYVDNRFELVIVGSKRARQIATQGKEPLVAPENDKPTVIALREIELGLID 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIA 87 + L + + + + + Sbjct: 61 DAFLAATDAEPVEHFAEPSEENADNLY 87 >UniRef50_Q15Z09 DNA-directed RNA polymerase subunit omega n=45 Tax=Proteobacteria RepID=RPOZ_PSEA6 Length = 90 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 49/90 (54%), Positives = 63/90 (70%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAV+KIGNRFDLVLVAARRARQ+ + GK V DK TV+ALREIEEG + Sbjct: 1 MARVTVEDAVDKIGNRFDLVLVAARRARQLAIEGKVAHVSVGTDKPTVVALREIEEGHVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGR 90 LD ++Q Q+ A+ ++V I + + Sbjct: 61 ASTLDAENLRDQHAQDQAQFESVANILQEQ 90 >UniRef50_A1US30 DNA-directed RNA polymerase subunit omega n=21 Tax=Proteobacteria RepID=RPOZ_BARBK Length = 132 Score = 98.0 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRF+LVL+A RARQ+ G + V +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIDKVDNRFELVLLAGHRARQISQGAQ-ITVSRDNDKNPVVALREIADETLS 59 Query: 61 NQILDVRER-QEQQEQEAAELQAVTAI 86 L Q+ E E +AVT Sbjct: 60 PADLKEDLIHSLQKHVEVDEPEAVTEF 86 >UniRef50_B9ZJB3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJB3_9GAMM Length = 91 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 57/75 (76%), Gaps = 1/75 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF+LVL+AARRAR + G K+P V E+NDK TVIALREI EGL+ Sbjct: 1 MARVTVEDCLEKVDNRFELVLMAARRARHIAHG-KEPRVSEDNDKPTVIALREIAEGLVG 59 Query: 61 NQILDVRERQEQQEQ 75 ++ D + + Q++ Sbjct: 60 TEVFDEHDERPQKQM 74 >UniRef50_A5CX12 DNA-directed RNA polymerase subunit omega n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=RPOZ_VESOH Length = 110 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 1/86 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF+LVL+AA+RA Q+ GG PL+ DK TV+ALREIE GLI+ Sbjct: 1 MARVTVEDCLDHVENRFELVLIAAKRAHQLSSGGYKPLLNAGKDKPTVVALREIEAGLID 60 Query: 61 NQILDV-RERQEQQEQEAAELQAVTA 85 + IL EQ + L +V Sbjct: 61 SSILSEIYVIDEQLSAQQKVLDSVKM 86 >UniRef50_Q0A5V4 DNA-directed RNA polymerase subunit omega n=19 Tax=Proteobacteria RepID=RPOZ_ALHEH Length = 107 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 39/89 (43%), Positives = 54/89 (60%), Gaps = 2/89 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + + NRF LVLV ++RARQ+ G + V +NDK TV+ALREI +G + Sbjct: 1 MARVTVEDCLTNMDNRFQLVLVGSKRARQLANGA-EAHVDWDNDKPTVVALREIADGHVG 59 Query: 61 NQILDVR-ERQEQQEQEAAELQAVTAIAE 88 +IL+ + E E EA+ L A Sbjct: 60 REILEEQPEPVLDFEAEASALMEEEAAKG 88 >UniRef50_UPI0000E105D0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E105D0 Length = 89 Score = 95.7 bits (237), Expect = 4e-19, Method: Composition-based stats. Identities = 51/86 (59%), Positives = 63/86 (73%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+DAVE+IGNRFDLVLVAA+RARQ+ GK+P+V NDK TV+ALREIE+ L+ Sbjct: 1 MARVTVEDAVEQIGNRFDLVLVAAKRARQIATEGKEPMVDMGNDKPTVVALREIEQQLVT 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAI 86 L+ E EQ + E AE +V I Sbjct: 61 ADSLEAAEIAEQHQAEQAEFASVANI 86 >UniRef50_Q1QSI0 DNA-directed RNA polymerase subunit omega n=14 Tax=Proteobacteria RepID=RPOZ_CHRSD Length = 83 Score = 94.6 bits (234), Expect = 9e-19, Method: Composition-based stats. Identities = 35/75 (46%), Positives = 50/75 (66%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++ + NRF LV+VA +R+RQ+ G +D +P ENDK TV+ALREI GL++ Sbjct: 1 MARVTVEDCLDNVDNRFQLVMVATQRSRQLARGSRDAQLPWENDKPTVMALREIAAGLVD 60 Query: 61 NQILDVRERQEQQEQ 75 IL+ + Sbjct: 61 RSILNEAVEPPAAKP 75 >UniRef50_C6QAV6 DNA-directed RNA polymerase, omega subunit n=2 Tax=Hyphomicrobiaceae RepID=C6QAV6_9RHIZ Length = 152 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 2/86 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+KI NRF+LVL+AA RAR + G + ++DK VIALREI E +++ Sbjct: 1 MARVTVEDCVDKIPNRFELVLLAAHRARAITNGSA-ITIAPDDDKNPVIALREIAEKMLS 59 Query: 61 NQILDVRER-QEQQEQEAAELQAVTA 85 + Q+ E E +AV A Sbjct: 60 PDDMRETLISSIQKNTEVDEPEAVAA 85 >UniRef50_Q2N7Q3 DNA-directed RNA polymerase subunit omega n=8 Tax=cellular organisms RepID=RPOZ_ERYLH Length = 114 Score = 91.9 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 37/91 (40%), Positives = 55/91 (60%), Gaps = 4/91 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRFDLVL+AA+RAR++ GG + + + DK V+ALREI E I Sbjct: 1 MARVTVEDCVDKVPNRFDLVLLAAQRAREI-SGGAEMTIDRDRDKNPVVALREIAEQTIK 59 Query: 61 NQILDVRERQEQQE---QEAAELQAVTAIAE 88 + L Q+ + E V ++++ Sbjct: 60 PKDLQEAVVTNLQKILPDDDDEFDEVGSLSQ 90 >UniRef50_B7J583 DNA-directed RNA polymerase subunit omega n=2 Tax=Acidithiobacillus ferrooxidans RepID=RPOZ_ACIF2 Length = 91 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 39/86 (45%), Positives = 49/86 (56%), Gaps = 1/86 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRF+L LVAARRARQ+ G P V DK TVIALRE+ G ++ Sbjct: 1 MARVTVEDCLEHVDNRFELTLVAARRARQLASGAA-PEVEPGRDKNTVIALREVAAGKVS 59 Query: 61 NQILDVRERQEQQEQEAAELQAVTAI 86 ILD + A + T Sbjct: 60 RAILDEQMPPPLPNFPGAANREATGA 85 >UniRef50_A5FVX2 DNA-directed RNA polymerase subunit omega n=3 Tax=Acetobacteraceae RepID=RPOZ_ACICJ Length = 136 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E+I NRF+LVL+AA+RAR + G + +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIEQIPNRFELVLLAAQRARNLSRGAS-ITIDRDNDKNPVVALREIADSTVD 59 Query: 61 NQILDVRERQEQQEQEAAELQAVT 84 L+ + E Sbjct: 60 FGGLEQDLVKSLSRVPDPEPADEE 83 >UniRef50_B6IN07 DNA-directed RNA polymerase subunit omega n=13 Tax=Proteobacteria RepID=RPOZ_RHOCS Length = 142 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 9/94 (9%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D VEK+ NRF+LV++AA+RAR + G V +NDK V+ALREI + + Sbjct: 1 MARVTVEDCVEKVPNRFELVMMAAQRARDIAAGS-PLSVDRDNDKNPVVALREIADETVT 59 Query: 61 NQILDVR--------ERQEQQEQEAAELQAVTAI 86 + L Q++ E+E EL A Sbjct: 60 LETLRNSLIKGHQRVPEQDEPEEEIVELMAGENA 93 >UniRef50_Q0F2G6 DNA-directed RNA polymerase omega subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F2G6_9PROT Length = 87 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + NRF++VL+AARRARQ+QVG ++ E DK +V ALRE+ EG ++ Sbjct: 1 MARVTVEDCISYYPNRFEMVLLAARRARQIQVGM-PLMMETEGDKPSVSALREMGEGFVS 59 Query: 61 NQILDVRERQEQQEQEAAELQAVTA 85 ++L ++ Q ++ Q+AA Sbjct: 60 WEVLFEQDDQLRRRQQAAYNDEEGN 84 >UniRef50_Q2RT88 DNA-directed RNA polymerase subunit omega n=3 Tax=Rhodospirillaceae RepID=RPOZ_RHORT Length = 138 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 37/82 (45%), Positives = 49/82 (59%), Gaps = 2/82 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V KI NRF+LVLVA +RAR + G V +NDK V++LREI +G ++ Sbjct: 1 MARVTVEDCVLKIPNRFELVLVAGQRARDISAGSA-LTVDRDNDKNPVVSLREIADGTVD 59 Query: 61 NQILDVRERQ-EQQEQEAAELQ 81 L Q Q+ E E + Sbjct: 60 IPNLKEAVIQGLQKHVEIDEPE 81 >UniRef50_A8TKF0 RNA polymerase, omega subunit n=4 Tax=Proteobacteria RepID=A8TKF0_9PROT Length = 145 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 2/83 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + +I NRFDLV+ AA+RAR + G V +NDK V++LREI + +N Sbjct: 1 MARVTVEDCIVQIPNRFDLVMAAAQRARDISAGSA-ITVDRDNDKDPVVSLREIADQTVN 59 Query: 61 NQILDVRERQ-EQQEQEAAELQA 82 +L + Q+ E E + Sbjct: 60 AAVLQESLIKGLQKHVEVDEPED 82 >UniRef50_D0RNE4 Dna-directed rna polymerase subunit omega (Rnap omegasubunit) (Transcriptase subunit omega) (Rna polymerase omega subunit) n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RNE4_9RICK Length = 151 Score = 88.8 bits (219), Expect = 4e-17, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 60/100 (60%), Gaps = 11/100 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + N++DLV++A R Q+ G K P+V E+NDK TV++LREI + L++ Sbjct: 1 MARVTVEDCLEVVDNQYDLVILAKERTLQIGAGDK-PMVSEDNDKKTVLSLREIGDKLLD 59 Query: 61 NQILDV----------RERQEQQEQEAAELQAVTAIAEGR 90 + L+ + EQ+E +A E A I +G Sbjct: 60 QKTLETQTVDRAREHPEDAMEQEEYDAPEGDAFEEIYKGE 99 >UniRef50_B0T3H0 DNA-directed RNA polymerase subunit omega n=16 Tax=Proteobacteria RepID=RPOZ_CAUSK Length = 119 Score = 88.4 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 34/77 (44%), Positives = 49/77 (63%), Gaps = 1/77 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D VEK+ NRF LVL++A RAR + G LV +NDK V+ALREI + +++ Sbjct: 1 MARVTVEDCVEKVPNRFALVLLSAHRARGISAGAS-LLVDRDNDKNPVVALREIADDVVD 59 Query: 61 NQILDVRERQEQQEQEA 77 ++ L + Q + Sbjct: 60 HEGLREQLITTLQRVDE 76 >UniRef50_D0KVX3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KVX3_HALNC Length = 107 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 1/69 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + KI NRF+LVL+AARRARQ++ G +PLVP +K VIALREI EG I+ Sbjct: 1 MARVTVEDCLVKIPNRFELVLMAARRARQIEQGA-EPLVPMGKEKPVVIALREIGEGKID 59 Query: 61 NQILDVRER 69 +D + Sbjct: 60 QARIDEIQE 68 >UniRef50_A7HGP4 DNA-directed RNA polymerase subunit omega n=6 Tax=Cystobacterineae RepID=RPOZ_ANADF Length = 88 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D + + NRF LVL+A +R RQ+ G + PL +K V+ALREI G + Sbjct: 1 MARVTVEDCLPLVDNRFALVLLATKRTRQLMAGAR-PLQGHAKNKAPVVALREIATGKVR 59 Query: 61 NQI 63 Sbjct: 60 FDR 62 >UniRef50_Q6AN64 Probable DNA-directed RNA polymerase, omega chain n=1 Tax=Desulfotalea psychrophila RepID=Q6AN64_DESPS Length = 103 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 1 MARVTVQDAVEKI--GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 MAR+TV+D ++++ NRF+L+ +A +R Q + G +P + E +K V LREI G Sbjct: 17 MARITVEDCLDQVGKDNRFNLIHLAVKRIHQHRQG--EPFLAGERNKEVVNTLREIAAGK 74 Query: 59 INNQILDVRERQ 70 + +D Sbjct: 75 VTLANIDQLPDM 86 >UniRef50_A0L486 DNA-directed RNA polymerase subunit omega n=1 Tax=Magnetococcus sp. MC-1 RepID=RPOZ_MAGSM Length = 121 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 34/67 (50%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV D V+ + NRF+LV++AA+RARQ+ G +P V + DK TV+ALREI E +N Sbjct: 1 MARVTVDDCVQHVSNRFELVILAAKRARQLAKGA-EPEVSVDRDKNTVVALREIAESKLN 59 Query: 61 NQILDVR 67 L Sbjct: 60 MDDLRRM 66 >UniRef50_Q3YSH8 DNA-directed RNA polymerase subunit omega n=5 Tax=canis group RepID=RPOZ_EHRCJ Length = 138 Score = 87.2 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 1/64 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV++ + + N+F LV++A++RA + G P++ +N K TVIAL+EI ++ Sbjct: 1 MARLTVEECMGRTNNKFKLVILASQRAHDLNSGAC-PVIKHKNGKNTVIALKEIAAKQLD 59 Query: 61 NQIL 64 L Sbjct: 60 VSSL 63 >UniRef50_A9KGR6 DNA-directed RNA polymerase subunit omega n=6 Tax=Coxiella burnetii RepID=RPOZ_COXBN Length = 97 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 5/87 (5%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +E + NRFDLVL AA+RA +++GG +P+VP +NDK V+ALREI G Sbjct: 1 MARVTVEDCLEHVENRFDLVLKAAKRAHILELGGAEPMVPRDNDKPAVLALREIAAGY-- 58 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIA 87 RE QEQ+ +E + V A Sbjct: 59 ---DVTREGQEQETEEVDVGRNVLAET 82 >UniRef50_Q0APB9 DNA-directed RNA polymerase subunit omega n=8 Tax=Proteobacteria RepID=RPOZ_MARMM Length = 123 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EKI NRF LVL+AA RAR + G + + +NDK V+ALREI + ++ Sbjct: 1 MARVTVEDCIEKIPNRFRLVLMAAHRARNISAGS-ELTIDRDNDKNPVVALREIADETLD 59 Query: 61 NQILDVR 67 L Sbjct: 60 MDSLKDS 66 >UniRef50_A7HX41 DNA-directed RNA polymerase subunit omega n=79 Tax=Alphaproteobacteria RepID=RPOZ_PARL1 Length = 141 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 7/91 (7%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRF+LVL+A RAR M G + V +NDK V+ALREI + I Sbjct: 1 MARVTVEDCVDKVPNRFELVLLAGHRARAMSAGA-ELTVDRDNDKNPVVALREIADRTIM 59 Query: 61 NQILDVRE------RQEQQEQEAAELQAVTA 85 + L R E +E E ++Q + + Sbjct: 60 PEDLREELIGSMQSRVETEEPEVEQMQLLMS 90 >UniRef50_A9AEQ4 DNA-directed RNA polymerase subunit omega n=53 Tax=Proteobacteria RepID=RPOZ_BURM1 Length = 67 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 30/65 (46%), Positives = 42/65 (64%), Gaps = 2/65 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +++I NRF+L L A RARQ+ G + E DK TV+ALREI G + Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLAQGHTPKI--ESRDKPTVVALREIAAGQVG 58 Query: 61 NQILD 65 ++L Sbjct: 59 LEMLK 63 >UniRef50_A3VSF8 DNA-directed RNA polymerase omega subunit n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VSF8_9PROT Length = 121 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRFDLVL+AA RAR + G V E DK V+ALRE+ + I Sbjct: 1 MARVTVEDCIDKVDNRFDLVLLAAHRARLIAAGS-PVEVERERDKNPVVALRELADDKIT 59 Query: 61 NQILDV 66 + L Sbjct: 60 AKALTE 65 >UniRef50_Q87DG6 DNA-directed RNA polymerase subunit omega n=19 Tax=Xanthomonadaceae RepID=RPOZ_XYLFT Length = 99 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 30/67 (44%), Positives = 47/67 (70%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN-DKTTVIALREIEEGLI 59 MAR+TV+D +E + NRF+LV++A++RARQ+ G + + DK TV+ALREI I Sbjct: 1 MARITVEDCLEVVNNRFELVMMASKRARQLANGVPPLIENTNSEDKPTVMALREIAARKI 60 Query: 60 NNQILDV 66 N++++D Sbjct: 61 NSKMIDE 67 >UniRef50_Q725M7 DNA-directed RNA polymerase subunit omega n=17 Tax=Proteobacteria RepID=RPOZ_DESVH Length = 77 Score = 84.5 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 2/79 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++I NRF LV +A +R +Q + G + + + +K V ALREI G + Sbjct: 1 MARITVEDCQKRIDNRFLLVQMAIKRVQQYREGYEPLV--DSKNKEVVTALREIAAGKVM 58 Query: 61 NQILDVRERQEQQEQEAAE 79 + L + E +E AE Sbjct: 59 PEDLALYRPAEGEEMPVAE 77 >UniRef50_Q6MMQ7 DNA-directed RNA polymerase subunit omega n=1 Tax=Bdellovibrio bacteriovorus RepID=RPOZ_BDEBA Length = 79 Score = 84.5 bits (208), Expect = 9e-16, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 2/77 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D +EK+ NRF LVL+ A+RA+Q+ G + V ++K V +LRE+ G + Sbjct: 1 MARVTVEDCLEKVPNRFALVLMVAKRAKQLLKGA-EATVSTRSNKYIVSSLREVAMGNVG 59 Query: 61 NQI-LDVRERQEQQEQE 76 Q LD E Q E++ Sbjct: 60 YQDSLDANEAIRQIEKD 76 >UniRef50_Q4FLD7 DNA-directed RNA polymerase subunit omega n=3 Tax=Candidatus Pelagibacter RepID=RPOZ_PELUB Length = 180 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ + ++LVLVA RA Q+ G +P + +NDK TVI+LREI I Sbjct: 1 MARVTVEDCIDKVESPYELVLVAKERAVQLNSG-LEPTLDRDNDKNTVISLREIAADTIK 59 Query: 61 NQILDV----------RERQEQQEQEAAELQAVTAIAEGR 90 L + + + + ++ +G Sbjct: 60 VSDLTDSAIHKLRKHVEQVDDGTDDDEIIGDDFESMYKGE 99 >UniRef50_Q0C3U4 DNA-directed RNA polymerase subunit omega n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=RPOZ_HYPNA Length = 116 Score = 83.0 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 11/98 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D ++K+ NRF+LVL+AA RAR ++ G + +NDK V++LREI E I+ Sbjct: 1 MARVTVEDCIQKVPNRFELVLLAAHRARMIREGS-PLTIDRDNDKDPVVSLREIAETSID 59 Query: 61 NQILDVRE----------RQEQQEQEAAELQAVTAIAE 88 +++ + ++E + LQA A E Sbjct: 60 LKVVKEALISNLQDIRPGEENEREADRVALQAAPAATE 97 >UniRef50_Q0AD35 DNA-directed RNA polymerase subunit omega n=4 Tax=Betaproteobacteria RepID=RPOZ_NITEC Length = 67 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D ++ I NRF++ L A RARQ+ VG P++ DK VIALRE+ + N Sbjct: 1 MARITVEDCLKVIPNRFNMTLAATVRARQISVGS-TPMIDAGRDKPIVIALRELAQKKYN 59 Query: 61 NQILDV 66 IL+ Sbjct: 60 ENILNT 65 >UniRef50_B2GI83 DNA-directed RNA polymerase omega subunit n=4 Tax=Actinomycetales RepID=B2GI83_KOCRD Length = 156 Score = 82.2 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEE-NDKTTVIAL 51 V ++K +++ LV+ ARRARQ+ PLV + N+K IA Sbjct: 13 NPPVDRLLDKTDSKYGLVIFGARRARQINAYYSQLHEGLFEYVGPLVDTKLNEKPLSIAF 72 Query: 52 REIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAE 88 REI+EGLI + + + E A Sbjct: 73 REIDEGLIEADHVADAGFTPNGQMVSDEPTATEMFTG 109 >UniRef50_A0Q119 DNA-directed RNA polymerase subunit omega n=25 Tax=Clostridium RepID=RPOZ_CLONN Length = 73 Score = 81.5 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ D + K+ NR+ LV V +RRARQ+ G + + E+ K A+ E+ G ++ Sbjct: 5 MINPSIVDLLTKVDNRYSLVTVTSRRARQIIDGDEALVNVEDAYKPLTTAIHEVNAGKVS 64 Query: 61 NQILDV 66 + L Sbjct: 65 YESLVE 70 >UniRef50_Q0TPK7 DNA-directed RNA polymerase subunit omega n=26 Tax=Clostridia RepID=RPOZ_CLOP1 Length = 70 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 43/67 (64%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ D ++++ +R+ LV+++A+RARQ+ G + V E++K IA+ EI+EG +N Sbjct: 5 MINPSIVDLLKRVEDRYSLVILSAKRARQIIDGA-ETFVDVESNKPLTIAINEIDEGFVN 63 Query: 61 NQILDVR 67 + + + Sbjct: 64 YKDTEEK 70 >UniRef50_A8MH81 DNA-directed RNA polymerase subunit omega n=2 Tax=Alkaliphilus RepID=RPOZ_ALKOO Length = 71 Score = 80.7 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + ++K+ +R+ LV+ AA+RARQ+ G + + K IA +EI E + Sbjct: 1 MLYPPINELLDKVDSRYTLVVAAAKRARQLIDGAVPKIEMPYSKKPVSIATQEIYESYVL 60 Query: 61 NQILDVRERQE 71 + E Sbjct: 61 YTSGEDETDIE 71 >UniRef50_A1B1V8 DNA-directed RNA polymerase subunit omega n=34 Tax=Rhodobacterales RepID=RPOZ_PARDP Length = 118 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVTV+D V+K+ NRFDLV++AA RAR++ G V +NDK V++LREI + Sbjct: 1 MARVTVEDCVDKVPNRFDLVMLAAHRAREIAAGS-PLTVDRDNDKNPVVSLREIADETQP 59 Query: 61 NQILDVRERQEQQEQ-EAAELQAVTAI 86 L R + QQ Q E E + Sbjct: 60 VDDLRERMIEAQQTQIEVDEPEEDAMA 86 >UniRef50_C9KKR2 DNA-directed RNA polymerase, omega subunit n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKR2_9FIRM Length = 76 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + ++K+ +R+ LV++AA+RARQ+ G + + K AL EI EG I Sbjct: 10 MVNPSTDELMKKVDSRYGLVVLAAKRARQLLDGAELKATKAHSTKNVTNALEEIAEGKIT 69 Query: 61 NQILDVR 67 ++ + Sbjct: 70 YELDIDQ 76 >UniRef50_Q3AC15 DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridia RepID=RPOZ_CARHZ Length = 69 Score = 79.9 bits (196), Expect = 2e-14, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ ++K +R+ LV+ A+RARQ+ G L ++K IAL EI LI Sbjct: 1 MNQPSLDILMKKADSRYTLVVATAKRARQITAGESSKL-KHISNKPVTIALHEIGNDLIT 59 Query: 61 NQILDVRE 68 Q L + Sbjct: 60 YQRLKSSQ 67 >UniRef50_B0BYC5 DNA-directed RNA polymerase subunit omega n=11 Tax=Rickettsia RepID=RPOZ_RICRO Length = 127 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN-DKTTVIALREIEEGLI 59 MAR+T +D + I +RF LV++A R A+ + + + +E DK VIALR I G + Sbjct: 1 MARITAEDCNKIIPDRFRLVVLATRYAKLLNYKVETNHIKKEKLDKPPVIALRRIAAGKV 60 Query: 60 NNQILD------------VRERQEQQEQEAAE--LQAVTAIAEGR 90 + L+ + Q E EA E + + + G Sbjct: 61 SVAQLEQDLINSLRTRTMIEPLVNQDESEAVEEKFEYLPEVYIGE 105 >UniRef50_A8ZUJ4 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZUJ4_DESOH Length = 121 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILD 65 ++D + K+ +RF+LV +AA+R RQ++ G + ++ +N+ V+ALREI G I + + Sbjct: 1 MEDCLRKVPSRFELVHLAAQRVRQIREGSEYLVISPKNE-DIVVALREIAAGKITQENMA 59 Query: 66 VRERQEQQEQEAAELQAVTAIAEGR 90 + +A E ++ Sbjct: 60 AALASGFFKADAFENDGISEEIAEE 84 >UniRef50_B8CWR9 DNA-directed RNA polymerase, omega subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWR9_HALOH Length = 70 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 35/61 (57%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 ++ ++K+ + + LV++A+RRARQ+ VG + + ++ K +L EI G + + Sbjct: 6 YPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYE 65 Query: 63 I 63 I Sbjct: 66 I 66 >UniRef50_C4XRE2 DNA-directed RNA polymerase subunit omega n=6 Tax=Desulfovibrionales RepID=RPOZ_DESMR Length = 74 Score = 79.2 bits (194), Expect = 4e-14, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EKI NRF +V +A +R Q + G + E +K V ALREI G + Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREGYDPLV--ECKNKEVVTALREIAAGEVM 58 Query: 61 NQILDVR 67 Sbjct: 59 PADSIEE 65 >UniRef50_A0LJ43 DNA-directed RNA polymerase subunit omega n=4 Tax=Deltaproteobacteria RepID=RPOZ_SYNFM Length = 121 Score = 78.8 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MARVT++D ++++ +RF LV +A RR Q++ G P + E +K V+ALREI G + Sbjct: 1 MARVTIEDCLKEVDSRFTLVHLAVRRVLQLRGGA--PPLTEVRNKEVVLALREIAAGKVT 58 Query: 61 NQILDVRERQEQQEQEAAELQ 81 + E + + A Q Sbjct: 59 VDNIRRLEEAKALPEPVAVTQ 79 >UniRef50_C0GLF9 DNA-directed RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=C0GLF9_9DELT Length = 71 Score = 78.8 bits (193), Expect = 5e-14, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EK+ NRF LV ++ RR +Q + G K + E +K V +LREI G + Sbjct: 1 MARITVEDCLEKVNNRFLLVQMSVRRIQQYREGYKPLV--ESKNKDVVTSLREIAAGKVI 58 Query: 61 NQ 62 Sbjct: 59 PS 60 >UniRef50_B0TGS4 DNA-directed RNA polymerase subunit omega n=9 Tax=Firmicutes RepID=RPOZ_HELMI Length = 69 Score = 78.4 bits (192), Expect = 6e-14, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 36/63 (57%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ +EK+ +++ LV++AA+RAR + + ++ K IAL EI +G ++ Sbjct: 1 MNQPSLDKLMEKVDSKYTLVVLAAKRARALVEKQAPLVSVAKSAKPVSIALHEIVDGKVS 60 Query: 61 NQI 63 + Sbjct: 61 YRQ 63 >UniRef50_D2RL26 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RL26_ACIFE Length = 73 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ +K+G+++ LV++A++RARQ+ LV +++K IAL EI EGL+ Sbjct: 3 MIDPSIDVLADKVGSKYALVIMASKRARQLVD-HAPALVKCDSNKPVSIALHEIGEGLVT 61 Query: 61 NQILDVRERQ 70 + + Sbjct: 62 IATKEDLKEM 71 >UniRef50_Q182S6 DNA-directed RNA polymerase subunit omega n=6 Tax=Clostridium RepID=RPOZ_CLOD6 Length = 88 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 44/79 (55%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ + +EKI NR+ LV ++RAR++ G + + + +K +A +E+ G I Sbjct: 1 MLKPSINEVLEKIDNRYYLVGTVSKRARKLIDGEEPYVSNKTKEKPVCVATKEVASGKIT 60 Query: 61 NQILDVRERQEQQEQEAAE 79 ++L E + ++ + AE Sbjct: 61 YRLLTEEEIEIEEARHHAE 79 >UniRef50_C7NHE8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NHE8_KYTSD Length = 141 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 40/98 (40%), Gaps = 11/98 (11%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIAL 51 + D ++ + +++ LV+ +A+RARQ+ + E +DK IAL Sbjct: 13 NPPIDDLLQHVDSKYALVIYSAKRARQINAYYAQLKEGLLEYVGPLVEAEASDKPLSIAL 72 Query: 52 REIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEG 89 +EI + + A + +A+T + E Sbjct: 73 QEINADKLVRTVGHDIPEVGTPGMPAEQPEAITPVTEE 110 >UniRef50_A8EYA7 DNA-directed RNA polymerase subunit omega n=4 Tax=Rickettsia RepID=RPOZ_RICCK Length = 127 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 15/105 (14%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN-DKTTVIALREIEEGLI 59 MARVT +D + I +RF LV++A R A+ + + +E DK VIALR I G + Sbjct: 1 MARVTAEDCNKIIPDRFRLVVLATRYAKLLNYKVETSYSKKEKRDKPPVIALRRIAAGKV 60 Query: 60 NNQILDVRER--------------QEQQEQEAAELQAVTAIAEGR 90 + L+ Q+ E + + + G Sbjct: 61 SVAQLEQDLINSLCTRNIIEPLANQDDLEDVEEKFDYLPEVYVGE 105 >UniRef50_C6PE51 DNA-directed RNA polymerase, omega subunit n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PE51_CLOTS Length = 69 Score = 76.5 bits (187), Expect = 2e-13, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 61 ++ D + KI +++ L + ++RARQ+ G + L+ ++ K IA EI EGLI Sbjct: 3 LYPSIVDLMNKIDSKYTLCALVSKRARQIING-EPSLIQTDSKKPVTIATEEINEGLITF 61 Query: 62 QI 63 + Sbjct: 62 ER 63 >UniRef50_D2L4R0 DNA-directed RNA polymerase, omega subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4R0_9DELT Length = 74 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 MAR+TV+D +EKI NRF +V +A +R Q + G + + E +K V ALREI G + Sbjct: 1 MARITVEDCLEKINNRFLIVQMAIKRVHQYREGYEPLV--ECKNKEVVTALREIAAGEVL 58 Query: 61 NQ 62 Sbjct: 59 PS 60 >UniRef50_Q1NT55 RNA polymerase, omega subunit n=2 Tax=Deltaproteobacteria RepID=Q1NT55_9DELT Length = 99 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 4/72 (5%) Query: 1 MARVTVQDAVEKI--GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 MAR+TV+D +++I NRF L+ +A R +Q + G + P +K V ALREI G Sbjct: 1 MARITVEDCLQQIGNENRFALIHLAVERVKQHRSGAQFP--ERCKNKEIVCALREIAGGT 58 Query: 59 INNQILDVRERQ 70 +N + +Q Sbjct: 59 VNFDNIRQLRQQ 70 >UniRef50_C0WES4 DNA-directed RNA polymerase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WES4_9FIRM Length = 70 Score = 75.7 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ EK+G+++ LV++AA+RARQ+ LV +++K IA+ EI +GL+ Sbjct: 3 MIDPSIDYLAEKVGSKYGLVIMAAKRARQLVD-HAPALVESKSNKPVSIAMEEIAQGLVT 61 Query: 61 NQ 62 + Sbjct: 62 AE 63 >UniRef50_B8I2Z7 DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales RepID=RPOZ_CLOCE Length = 68 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + ++K+ +R+ L + AA+RARQ+ G + ++DK IA+ EI E I Sbjct: 1 MIYPSINELMKKVDSRYTLAVEAAKRARQLVDGATK-MAKCDSDKEVTIAINEIAEDKIT 59 Query: 61 N 61 Sbjct: 60 Y 60 >UniRef50_UPI0001699E3B DNA-directed RNA polymerase, omega subunit n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699E3B Length = 75 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 7/73 (9%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQEQQ 73 NRFDLVLVA +RARQ++ G +PL+P ENDK TV+ALREI +GLI Q L EQ Sbjct: 2 DNRFDLVLVATKRARQLEHG-VEPLLPWENDKPTVMALREIADGLIAGQDL------EQP 54 Query: 74 EQEAAELQAVTAI 86 E EA + A + Sbjct: 55 EDEAMVVDATISA 67 >UniRef50_D2PV86 DNA-directed RNA polymerase, omega subunit n=4 Tax=Actinomycetales RepID=D2PV86_9ACTO Length = 104 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 11/74 (14%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIALR 52 + D + +++ LVL +A+RARQ+ + +K IA+R Sbjct: 14 PPIDDLLTHTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVETHVQEKPLSIAMR 73 Query: 53 EIEEGLINNQILDV 66 EI +G++ +D Sbjct: 74 EINDGVLTCTDIDP 87 >UniRef50_Q14IC5 DNA-directed RNA polymerase subunit omega n=19 Tax=Gammaproteobacteria RepID=RPOZ_FRAT1 Length = 72 Score = 74.1 bits (181), Expect = 1e-12, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 1/71 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQM-QVGGKDPLVPEENDKTTVIALREIEEGLI 59 MARVTV+D ++K+ RFDLV++A+ RA ++ + G + + E+ +K TV+ALREI E I Sbjct: 1 MARVTVEDCLDKVETRFDLVVLASMRANKILKNGYSESMENEKKEKATVVALREIAESEI 60 Query: 60 NNQILDVRERQ 70 + + E + Sbjct: 61 TPEQILRNEIE 71 >UniRef50_Q38XT9 DNA-directed RNA polymerase subunit omega n=54 Tax=Lactobacillaceae RepID=RPOZ_LACSS Length = 85 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 38/74 (51%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 ++ +E + +R+ L ++A++RA Q++ G L ++ KT +A+ EI G + Sbjct: 4 YPSIDKLLENVNSRYSLAVLASKRAHQIEAGDLKMLSEYKSPKTVGMAMEEIAAGNVTID 63 Query: 63 ILDVRERQEQQEQE 76 + ++ ++ + Sbjct: 64 PDSLMLEKDAEKMD 77 >UniRef50_A4XL85 DNA-directed RNA polymerase, omega subunit n=1 Tax=Caldicellulosiruptor saccharolyticus DSM 8903 RepID=A4XL85_CALS8 Length = 76 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLI 59 + R + + ++ + N++ L ++ A+RARQ+ + + + E+DK +A+ EI G I Sbjct: 2 LLRPGLDELLQYVDNKYTLSVLVAKRARQLLEQMQKKVDINLESDKYVTMAVNEIASGKI 61 Query: 60 NNQILDVRERQEQQE 74 + + + ++ E ++ Sbjct: 62 SYKYIKPVKKNESKK 76 >UniRef50_A1SJF7 DNA-directed RNA polymerase subunit omega n=5 Tax=Actinomycetales RepID=RPOZ_NOCSJ Length = 110 Score = 73.0 bits (178), Expect = 2e-12, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEE-NDKTTVIAL 51 + + + K +++ LVL +A+RARQ+ PLV +K IAL Sbjct: 13 NPPIDELLTKTDSKYKLVLYSAKRARQINAYYSQLGEGLLEYVGPLVDTHVQEKPLSIAL 72 Query: 52 REIEEGLINNQILDV 66 REI E L+ + +D Sbjct: 73 REINEDLLTCEDVDP 87 >UniRef50_C7MCK5 DNA-directed RNA polymerase subunit omega n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCK5_BRAFD Length = 120 Score = 72.2 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 11/85 (12%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD----------PLVPEEN-DKTTVIAL 51 + +E + +++ LVL ++RARQ+ PLV EN +K+ IAL Sbjct: 13 NPPIDRLLETVDSKYALVLYGSQRARQINAYYSQLSEGLLEFVGPLVDVENQEKSLSIAL 72 Query: 52 REIEEGLINNQILDVRERQEQQEQE 76 REI+EGL+ + +D E Q E + Sbjct: 73 REIDEGLLTVREIDEEEYAAQNEPD 97 >UniRef50_B9MR33 DNA-directed RNA polymerase, omega subunit n=1 Tax=Anaerocellum thermophilum DSM 6725 RepID=B9MR33_ANATD Length = 77 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 40/76 (52%), Gaps = 2/76 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPL--VPEENDKTTVIALREIEEGL 58 + R + + ++ + N++ L ++ A+RARQ+ + + +DK +A+ E+ G Sbjct: 2 LLRPGLDELLKYVDNKYTLSVLVAKRARQLLQQAQKKVDITNFNSDKYVTMAVNEVASGK 61 Query: 59 INNQILDVRERQEQQE 74 I+ + + ++ E ++ Sbjct: 62 ISYKYVKPVKKNEIKK 77 >UniRef50_Q2LQ83 DNA-directed RNA polymerase subunit omega n=1 Tax=Syntrophus aciditrophicus SB RepID=RPOZ_SYNAS Length = 91 Score = 71.8 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 40/59 (67%), Gaps = 1/59 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 MAR+TV+DA++ GNRF LVL+A +R++Q+ G PL N++ V ALREI + + Sbjct: 1 MARITVEDALKVAGNRFALVLLAVQRSKQLLRGA-RPLTNVRNNREIVAALREIADNKV 58 >UniRef50_A4FBI2 DNA-directed RNA polymerase subunit omega n=6 Tax=Actinomycetales RepID=RPOZ_SACEN Length = 97 Score = 71.5 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIAL 51 + D +E++ +++ LV+ +A+RARQ+ + P +K IAL Sbjct: 24 NPPIDDLLEQVSSKYALVIYSAKRARQINDYYAQLGEGLLEYVGPLVEPGPREKPLSIAL 83 Query: 52 REIEEGLINNQILD 65 REI G++ + + Sbjct: 84 REIHAGVLEHTEGE 97 >UniRef50_Q82ZD6 DNA-directed RNA polymerase subunit omega n=44 Tax=Firmicutes RepID=RPOZ_ENTFA Length = 99 Score = 71.5 bits (174), Expect = 9e-12, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 36/59 (61%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 M + ++ ++++ +++ LV++A++RA ++ G + + ++ K+ AL EIE G + Sbjct: 1 MLKPSIDSLLKEVPSKYSLVILASKRAHELDEGVQPTVESFDSVKSVGRALEEIEAGTV 59 >UniRef50_C9RCK7 DNA-directed RNA polymerase, omega subunit n=1 Tax=Ammonifex degensii KC4 RepID=C9RCK7_AMMDK Length = 71 Score = 70.7 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + D ++ NR+ L ++AA++AR++ L+ + K ALR+I EG + Sbjct: 3 MNEPPLDDLLKLTKNRYILAILAAKQARKINEKMNAGLID-DGMKPVSRALRQIAEGKVK 61 Query: 61 NQ 62 Sbjct: 62 FA 63 >UniRef50_C9LLL1 DNA-directed RNA polymerase, omega subunit n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLL1_9FIRM Length = 66 Score = 70.3 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + V+K+ ++ LV +AA RAR++ G L+ ++ KT +AL EI I+ Sbjct: 2 MCYPAIDALVKKVDTKYTLVTLAALRARELTDGS-PALLDDKGKKTVTVALEEIYHDKIS 60 Query: 61 N 61 Sbjct: 61 Y 61 >UniRef50_A1A0T8 DNA-directed RNA polymerase subunit omega n=79 Tax=Actinobacteridae RepID=RPOZ_BIFAA Length = 94 Score = 69.9 bits (170), Expect = 2e-11, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEEN-DKTTVI 49 +A + D +E +++ L + AA+RARQ+ PLV +N +K I Sbjct: 12 LADPPIDDLMEHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNQEKPLSI 71 Query: 50 ALREIEEGLINNQILDV 66 A REI GL+ + + Sbjct: 72 AFREINSGLLEETLGED 88 >UniRef50_A1KIH9 DNA-directed RNA polymerase subunit omega n=30 Tax=Actinomycetales RepID=RPOZ_MYCBP Length = 110 Score = 69.9 bits (170), Expect = 3e-11, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEE-NDKTTVIAL 51 + + ++++ +++ LV+ AA+RARQ+ PLV +K IAL Sbjct: 37 NPPIDELLDRVSSKYALVIYAAKRARQINDYYNQLGEGILEYVGPLVEPGLQEKPLSIAL 96 Query: 52 REIEEGLINNQILD 65 REI L+ + + Sbjct: 97 REIHADLLEHTEGE 110 >UniRef50_A4X624 DNA-directed RNA polymerase subunit omega n=10 Tax=Actinobacteria (class) RepID=RPOZ_SALTO Length = 88 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 11/76 (14%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIAL 51 + + +EK +++ LV+ AA+RARQ+ + +K IA+ Sbjct: 13 NPPIDELLEKTTSKYALVIFAAKRARQVNAYYSQLGEGLLEYVGPLVETTPQEKPLSIAM 72 Query: 52 REIEEGLINNQILDVR 67 REI GL+ + D Sbjct: 73 REINGGLLTAEPTDQP 88 >UniRef50_Q2GKJ2 DNA-directed RNA polymerase subunit omega n=4 Tax=Anaplasma RepID=RPOZ_ANAPZ Length = 135 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Query: 14 GNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 GNRF LV++A++RA ++ G LV + DK TV+ALREI ++ + Sbjct: 14 GNRFKLVILASQRAHELSSGAAT-LVDRQGDKNTVVALREIASNQLDLSTV 63 >UniRef50_Q5GSP9 DNA-directed RNA polymerase subunit omega n=6 Tax=Wolbachia RepID=RPOZ_WOLTR Length = 142 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 2/66 (3%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPE--ENDKTTVIALREIEEGL 58 MA ++ E++ NRF L L+A++R + G +P+ + K T+I+L EI E Sbjct: 1 MAESVIEKCTEQVSNRFKLALLASQRTHDLNTGASNPVQSARFKGHKNTIISLYEIAERQ 60 Query: 59 INNQIL 64 ++ L Sbjct: 61 VDTHEL 66 >UniRef50_Q2RK30 DNA-directed RNA polymerase subunit omega n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RPOZ_MOOTA Length = 67 Score = 66.4 bits (161), Expect = 2e-10, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ + ++ G+++ L ++AA+RAR + P + K IAL EI G I Sbjct: 1 MKQPSLDELEKRAGSKYALAVLAAKRARMLTESQFAAQYP-KGTKPVTIALMEIAAGKIK 59 Query: 61 NQ 62 + Sbjct: 60 YE 61 >UniRef50_B2A2J8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A2J8_NATTJ Length = 63 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M V + VE++ +++ LV+ A+RAR++ G LV ++ K+ +AL+EI+ +N Sbjct: 1 MNEPAVDNLVEQVESKYSLVIAVAKRAREIVDGS-PSLVENKSPKSVTVALKEIDANKLN 59 Query: 61 NQ 62 Sbjct: 60 YH 61 >UniRef50_C2KWT8 DNA-directed RNA polymerase n=1 Tax=Oribacterium sinus F0268 RepID=C2KWT8_9FIRM Length = 140 Score = 66.1 bits (160), Expect = 3e-10, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%) Query: 1 MARVTVQDAVE-----------KIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVI 49 M R T D +E ++ +R+ +V+ +A+RARQ+ G + + EE K + Sbjct: 1 MLRPTYNDLIESMNRNREEGELEVQSRYSVVIASAKRARQLIDGEEPLIKGEEGKKPLSM 60 Query: 50 ALREIEEGLINNQILDVRERQEQQEQEAAE 79 A+ EI L+N + E + E E Sbjct: 61 AIEEISRNLVNVEKGLDYEDEPIILPEKEE 90 >UniRef50_C1F1L4 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1L4_ACIC5 Length = 75 Score = 65.7 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Query: 12 KIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQE 71 + + F VLVAARRARQ+Q G + PL+P + K A EI GL+ + R E Sbjct: 6 QFDSHFRYVLVAARRARQLQQGSQ-PLMPGRSAKPHKQAQEEINAGLVGYIRNETPRRVE 64 Query: 72 QQEQEAAELQA 82 +E + Sbjct: 65 LEETVVPRFAS 75 >UniRef50_C4L5X2 DNA-directed RNA polymerase subunit omega n=8 Tax=Bacillales RepID=RPOZ_EXISA Length = 69 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 29/57 (50%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEG 57 M ++ I +++ +V VAA+RARQ+Q G + ++ K AL E+ G Sbjct: 1 MLYPSIDALQRTIPSKYTIVTVAAKRARQIQDGKAPKVAEPKSYKPVGQALEELFSG 57 >UniRef50_B2GD58 DNA-directed RNA polymerase subunit omega n=4 Tax=Lactobacillus RepID=RPOZ_LACF3 Length = 94 Score = 65.3 bits (158), Expect = 6e-10, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 41/90 (45%), Gaps = 22/90 (24%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQ---------------------VGGKDPLVPE- 41 +V +E++ +R+ L+++A++RA ++ G K L+ Sbjct: 5 PSVDKLLERVDSRYSLIMLASKRAHEIDKYRIDKWRAAHPDKAGETVSLEGDKPLLLDHY 64 Query: 42 ENDKTTVIALREIEEGLINNQILDVRERQE 71 +++K+ +AL EIE GL+ + Q+ Sbjct: 65 DSNKSVGMALEEIEAGLVTIDPDQHEDLQD 94 >UniRef50_Q025H8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025H8_SOLUE Length = 85 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINN 61 A T+ D E+ RF ++VAA+RARQ+Q GG P++P + K TVIA+ E+ GL+ Sbjct: 10 AHCTLPDDPEQSTYRF--IIVAAKRARQLQ-GGARPVLPTSSKKPTVIAMEEVRRGLVKY 66 Query: 62 QILDVRERQEQQEQEAAELQA 82 ++ + E A Sbjct: 67 EL--TGPLVHGHLEPPPEPAA 85 >UniRef50_C7M0V2 DNA-directed RNA polymerase, omega subunit n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0V2_ACIFD Length = 94 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 10/85 (11%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQV----------GGKDPLVPEENDKTTVIA 50 + +++ +E G++F L+ +AARRARQ+ P V + K +A Sbjct: 8 LLNPPIEELLEHTGSKFVLITLAARRARQINDYRTHLGEGLGAMIPPQVESDVAKPLSLA 67 Query: 51 LREIEEGLINNQILDVRERQEQQEQ 75 EI G+I ++ + +++ Sbjct: 68 FEEIAAGMIVPDVVAEDVTELVEDE 92 >UniRef50_Q03VH3 DNA-directed RNA polymerase, subunit K/omega n=3 Tax=Leuconostoc RepID=Q03VH3_LEUMM Length = 70 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 + +V +EK+ +R+ L+ + A+RAR++ G E++K+ AL EIE G + Sbjct: 2 LLYPSVDKLLEKVDSRYKLIALGAKRARELDAGLPATQETFESNKSVGQALEEIENGAVI 61 Query: 61 NQILDVRE 68 E Sbjct: 62 IDPKFEDE 69 >UniRef50_C6JAW5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C6JAW5_9FIRM Length = 119 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Query: 7 QDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV 66 D + +R+ LVL A++RARQ+ G K + K +A+ E+ +G + +IL Sbjct: 20 DDTTMSLNSRYSLVLAASKRARQIIAGSKPMVEGAAGKKPLSVAIDELYKGKV--KILAP 77 Query: 67 RERQEQQEQEAAELQAVTAIAEGR 90 E E+ ++ AE Q + Sbjct: 78 EEEDEEGTEQTAEAQTEESAQASE 101 >UniRef50_C1KWC5 DNA-directed RNA polymerase subunit omega n=17 Tax=Bacillales RepID=RPOZ_LISMC Length = 68 Score = 63.0 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQ-VGGKDPLVPEENDKTTVIALREIEEGLI 59 M ++ + + KI +++ LV VAA+RAR MQ K L ++DK AL EI G + Sbjct: 2 MLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKL 61 Query: 60 NNQILD 65 Q D Sbjct: 62 VLQNDD 67 >UniRef50_D1N300 DNA-directed RNA polymerase, omega subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N300_9BACT Length = 90 Score = 62.6 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 42/90 (46%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + A + I + L +VAA+RA+Q+ +GG P++ +++ +AL EI EGL++ Sbjct: 1 MNNAYLARAKKMIPDPQILSVVAAKRAKQLAIGGARPMIKCDSENLIDVALLEIAEGLLS 60 Query: 61 NQILDVRERQEQQEQEAAELQAVTAIAEGR 90 + E A + +G Sbjct: 61 YEFGTPGEIASGLPVVADGSEPAEIPVDGE 90 >UniRef50_UPI0001C31DAD DNA-directed RNA polymerase, omega subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31DAD Length = 86 Score = 62.6 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-----------DPLVPEENDKTTVIALR 52 + + + + + V+VAA+RARQ+ P+V + IAL Sbjct: 15 PRIDRLLAHVDSDYASVVVAAKRARQINSYYHNLGEGTFDEFPPPMVETRSKNYLTIALE 74 Query: 53 EIEEGLINNQ 62 E+ G I Sbjct: 75 EVASGKIKYH 84 >UniRef50_B1C5R9 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C5R9_9FIRM Length = 89 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + +EK+ N++ L ++ A+R+R++ G +P+V E A+ E+ E I Sbjct: 4 MINPPINELLEKVDNKYVLAMLVAKRSRELFDGD-EPMVDEYFVNLITTAVEEVYEDRIG 62 Query: 61 NQILDVRER 69 +++ +R Sbjct: 63 YYLIEEGDR 71 >UniRef50_UPI0001C42522 DNA-directed RNA polymerase subunit omega n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42522 Length = 72 Score = 61.8 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 2/72 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK--DPLVPEENDKTTVIALREIEEGL 58 M ++ ++K+ +++ LV V+A+RAR+++ + + K +AL EI E Sbjct: 1 MLYPSIDSLMDKLDSKYTLVTVSAKRAREIREDSSRGPLVNRPKAHKPVGMALEEIVEEH 60 Query: 59 INNQILDVRERQ 70 + + + E + Sbjct: 61 LRFERITPVEEE 72 >UniRef50_Q2GF15 DNA-directed RNA polymerase subunit omega n=2 Tax=Neorickettsia RepID=RPOZ_NEOSM Length = 128 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 34/50 (68%) Query: 15 NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 +RF+LV++A++RA +Q G + EE+DK+ VIAL+E+ ++ + L Sbjct: 15 SRFELVILASQRAYDLQSGSLPDVQHEESDKSPVIALKELYSLSMDYEKL 64 >UniRef50_Q1AVZ4 DNA-directed RNA polymerase subunit omega n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=RPOZ_RUBXD Length = 106 Score = 60.7 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 11/97 (11%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQV-----------GGKDPLVPEENDKTTVIALREI 54 +++ ++K+ +R+ LV+ A+RARQ+ G P V + IA+ E+ Sbjct: 7 IEELLDKVDSRYGLVVATAKRARQINEYTATLGLNESLGIPGPQVHTRSQHPLTIAIEEL 66 Query: 55 EEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 G + + + EA E Q A + Sbjct: 67 RAGKLKVGFREPAREAAEPAGEAPEEQQRAAGEREDQ 103 >UniRef50_C0ZG01 DNA-directed RNA polymerase subunit omega n=3 Tax=Paenibacillaceae RepID=RPOZ_BREBN Length = 68 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 36/65 (55%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + EK +++ LV VA++RARQ++ + +V ++ K +AL E + Sbjct: 1 MLYPSIDELTEKAESKYILVTVASKRARQLRENSEVQVVRPKSKKFVGLALEEFISDELV 60 Query: 61 NQILD 65 ++ LD Sbjct: 61 HEFLD 65 >UniRef50_C7H021 DNA-directed RNA polymerase, omega subunit n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H021_9FIRM Length = 69 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ + +K+ +R+ LV++AA RA+ + G K L + D+ +A EI+EGLI Sbjct: 1 MLYPSIDELRQKVDSRYTLVMLAALRAKDIVEG-KPKLTNVDVDRPISVAATEIDEGLIT 59 Query: 61 N 61 Sbjct: 60 Y 60 >UniRef50_D0U5Z1 DNA-directed RNA polymerase omega subunit n=1 Tax=uncultured actinobacterium RepID=D0U5Z1_9ACTN Length = 115 Score = 59.9 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVG----------GKDPLVPEENDKTTVIA 50 M ++ +++ ++F LV ++ARRAR++ P V + K I+ Sbjct: 1 MMNPPLESLMKRTLSKFSLVTLSARRAREINSYFNQLGEGLGTMVPPQVSSTSRKPLSIS 60 Query: 51 LREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAE 88 EI I + + E E A A A+ E Sbjct: 61 FEEIAADKILSVPMRAYEEPEADADAALLEVAADAVVE 98 >UniRef50_A6NUS4 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NUS4_9BACE Length = 67 Score = 59.9 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + + + ++ +R+ LV V A+RARQ+ ++ + E DK +AL+E+ EG Sbjct: 2 MLKPAMNELLAQVPSRYMLVNVVAQRARQIASEAEEEGISLE-DKPVTLALQEVAEGKYA 60 Query: 61 NQILDVR 67 Q+ D Sbjct: 61 PQVADEE 67 >UniRef50_Q820D5 DNA-directed RNA polymerase subunit omega n=5 Tax=Micrococcineae RepID=RPOZ_TROWT Length = 98 Score = 59.5 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 12/78 (15%) Query: 2 ARVTVQDAVEKIGNRFDLVLVAARRARQMQVGG-----------KDPLVPEEN-DKTTVI 49 A + + + G+++ LV+ AA+RARQ+ PLV + DK+ + Sbjct: 21 ADPPLDSLLSRSGSKYGLVIYAAKRARQIDQYYIDLHEGSFYAHVGPLVSVDADDKSLTV 80 Query: 50 ALREIEEGLINNQILDVR 67 A+REI E ++ + Sbjct: 81 AMREIAEDKLDLKSSAAE 98 >UniRef50_C8WW73 DNA-directed RNA polymerase, omega subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW73_ALIAD Length = 66 Score = 59.1 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQM-QVGGKDPLVPEENDKTTVIALREIEEGLI 59 M ++ +E+ +++ LV++AA+RAR++ P + AL EI +G++ Sbjct: 1 MIYPSIDRLLERCNSKYALVVLAAKRARKLQNETLNQPGASTTRN--VSRALWEIHDGVV 58 Query: 60 NNQILD 65 + D Sbjct: 59 RCKNFD 64 >UniRef50_C4Z9X7 DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales RepID=RPOZ_EUBR3 Length = 86 Score = 58.7 bits (141), Expect = 5e-08, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 12/86 (13%) Query: 1 MARVTVQDAVEKIGN------------RFDLVLVAARRARQMQVGGKDPLVPEENDKTTV 48 M + + ++ + N R+ +V+ AA+RARQ+ G + + + +K Sbjct: 1 MIHPSYVELMKVVNNNVEIGEEPVVNSRYSIVIAAAKRARQIIDGAEPLIAHPKCNKPLS 60 Query: 49 IALREIEEGLINNQILDVRERQEQQE 74 IA+ E+ G + D + ++ Sbjct: 61 IAVEELYTGAVRIVSDDEDLNEGEEA 86 >UniRef50_A5ZQ89 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZQ89_9FIRM Length = 106 Score = 58.4 bits (140), Expect = 7e-08, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 2/87 (2%) Query: 7 QDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV 66 D + +R+ LVL ++RARQ+ G + + K IA+ E+ +G + Sbjct: 20 DDNTMMLNSRYSLVLATSKRARQLIAGAEPLVPNTAGKKPLSIAIDELYKGEVKIVAASE 79 Query: 67 RERQEQQEQEAAE--LQAVTAIAEGRR 91 E + Q AE ++ + E + Sbjct: 80 AEEDTTKTQTVAEETVENIEETTENNQ 106 >UniRef50_A8VRS5 tRNA pseudouridine synthase B n=2 Tax=Bacillus RepID=A8VRS5_9BACI Length = 137 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKT--TVIALREIEEGL 58 M + ++ + KI +++ LV ++++RAR+++ + + + AL EI++ + Sbjct: 3 MLKPSIDSLMTKINSKYTLVTISSQRARELRDYPETASMTVRSTSPNFVGRALEEIDQEI 62 Query: 59 INNQILD 65 + + L Sbjct: 63 LGYKKLT 69 >UniRef50_A7X1G4 DNA-directed RNA polymerase subunit omega n=60 Tax=Staphylococcus RepID=RPOZ_STAA1 Length = 72 Score = 57.2 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVG-GKDPLVPEENDKTTVIALREIEEGLI 59 M + +I +++ + AA+RAR++ + L + K AL EI +G I Sbjct: 1 MLNPPLNQLTSQIKSKYLIATTAAKRAREIDEQPETELLSEYHSFKPVGRALEEIADGKI 60 Query: 60 NN 61 Sbjct: 61 RP 62 >UniRef50_B9DPL6 DNA-directed RNA polymerase subunit omega n=3 Tax=Staphylococcus RepID=RPOZ_STACT Length = 76 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPE-ENDKTTVIALREIEEGLI 59 M + K+ +++ + VAA+RAR++ + L+ + KT AL EI G I Sbjct: 1 MLYPPLNQLTSKVSSKYLIATVAAKRARELYDKPETALLEHYHSVKTVGKALEEIAAGKI 60 Query: 60 NNQILDVRERQ 70 ++ E + Sbjct: 61 TPIEPELNESE 71 >UniRef50_D1VSE9 DNA-directed RNA polymerase, omega subunit n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSE9_9FIRM Length = 96 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + ++ +EK +R++L ++ ++R+R++ G + LV + K +AL E+ EG I Sbjct: 1 MNIPSFKELMEKSDSRYELCMLVSKRSRKLVDG-QKALVDTDMKKPVSVALEEVMEGKII 59 Query: 61 N-QILDVRERQEQQEQEAAELQ 81 Q + +E +E+ E EL+ Sbjct: 60 FGQEMSDKEYEEKIAVERLELE 81 >UniRef50_C5EUH6 DNA-directed RNA polymerase n=6 Tax=Firmicutes RepID=C5EUH6_9FIRM Length = 89 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Query: 1 MARVTVQDAVEKIGN------------RFDLVLVAARRARQMQVGGKDPLVPEENDKTTV 48 M + D ++ + + R+ +V+ A+RRARQ+ G + K Sbjct: 1 MLHPSYTDLIDVVNSDIEPGEQPVVQSRYSIVIAASRRARQIIGGEDPMVSGAAGKKPLS 60 Query: 49 IALREIEEGLIN 60 IA+ E+ + Sbjct: 61 IAIDELYHQKVK 72 >UniRef50_B1HQE0 DNA-directed RNA polymerase subunit omega n=88 Tax=Firmicutes RepID=RPOZ_LYSSC Length = 75 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK-DPLVPEENDKTTVIALREIEEGLI 59 M +V ++I +++ LV +A++RARQMQ + L + K AL E+ G++ Sbjct: 1 MLYPSVDALKKEIDSKYSLVSLASKRARQMQEEQNTERLHKYVSHKYVGKALEEVAAGVL 60 Query: 60 NNQILDVRERQEQQ 73 D E + Sbjct: 61 TKVSQDESTVYEDE 74 >UniRef50_A2RN34 DNA-directed RNA polymerase subunit omega n=72 Tax=Lactobacillales RepID=RPOZ_LACLM Length = 117 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 2/83 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M ++ ++++ +++ LV++ A+RA +++ + P + K T+ AL EI +G + Sbjct: 2 MLEPSIDKLLDQVDSKYSLVVLEAKRAHELRDK-ERPTKEFKAVKRTLQALEEIADGTVK 60 Query: 61 NQIL-DVRERQEQQEQEAAELQA 82 +++ +++E LQA Sbjct: 61 IHPAPELKRETLVEKRELERLQA 83 >UniRef50_C7HU46 DNA-directed RNA polymerase subunit omega (RNA polymerase omega subunit) n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=C7HU46_9FIRM Length = 62 Score = 56.0 bits (134), Expect = 3e-07, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 M + ++ E +R+++ ++AA+RAR++ G D L E DK AL EI EG + Sbjct: 1 MNNPSFKELSEISSSRYEICMMAAKRARRIVNGS-DLLTKEVEDKPVTQALHEIMEGKV 58 >UniRef50_C9L6A8 DNA-directed RNA polymerase, omega subunit n=3 Tax=Clostridiales RepID=C9L6A8_RUMHA Length = 89 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 13/71 (18%) Query: 1 MARVTVQDAVEKIG------------NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTV 48 M + + +E I +R+ +VL ++RARQ+ G K+ +VP K Sbjct: 1 MIHPSYTELMEVINEGAEIDDEPLVTSRYSVVLATSKRARQLIAG-KEAMVPSSGKKPLS 59 Query: 49 IALREIEEGLI 59 A+ EI +G + Sbjct: 60 TAVEEIYKGKV 70 >UniRef50_A9KPG3 DNA-directed RNA polymerase subunit omega n=7 Tax=Clostridiales RepID=RPOZ_CLOPH Length = 82 Score = 55.7 bits (133), Expect = 4e-07, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Query: 1 MARVTVQDAVEKIGN------------RFDLVLVAARRARQMQVGGKDPLVPEENDKTTV 48 M + D ++ + + R+ +VL A+RARQ+ G + N K Sbjct: 1 MLHPSYNDLMQVVNSEVEPGEQPVVNSRYSIVLATAKRARQIIDGAEPLTESSCN-KPLS 59 Query: 49 IALREIEEGLINNQILDVRERQE 71 IA+ E+ + + D E Sbjct: 60 IAVEELYKSKVKIVSEDDENENE 82 >UniRef50_C7G7Q1 DNA-directed RNA polymerase, omega subunit n=3 Tax=Bacteria RepID=C7G7Q1_9FIRM Length = 89 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 12/72 (16%) Query: 1 MARVTVQDAVEKIG------------NRFDLVLVAARRARQMQVGGKDPLVPEENDKTTV 48 M + + ++ + +R+ +V+ AA+RARQ+ G + + K Sbjct: 9 MIHPSYVELMKVVNDGVEIGEEPVVNSRYSIVIAAAKRARQIIAGDEPMAEKKVCPKPLS 68 Query: 49 IALREIEEGLIN 60 IA+ E+ EG + Sbjct: 69 IAVEELYEGKVK 80 >UniRef50_C0QR95 DNA-directed RNA polymerase subunit omega n=4 Tax=Aquificales RepID=RPOZ_PERMH Length = 68 Score = 54.1 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 2/57 (3%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND--KTTVIALREIEEG 57 R ++ A++++ NR++LV AA+ A+ + G + V EE K TVI++ EI +G Sbjct: 4 RPLIEQALKRVNNRYELVHAAAKLAKDLYETGAESYVTEEGIPLKKTVISINEIAKG 60 >UniRef50_D2NT55 DNA-directed RNA polymerase, subunit K/omega n=2 Tax=Rothia mucilaginosa RepID=D2NT55_9MICC Length = 166 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 11/98 (11%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGK----------DPLVPEEND-KTTVIALR 52 + +EK +++ LV+ ARRARQ+ PLV E++ K+ +A+R Sbjct: 39 PSADALIEKAESKYGLVIFGARRARQINAYYANLQDNTAAHVGPLVDAESNEKSLSVAMR 98 Query: 53 EIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGR 90 EI + + + E +L AV + Sbjct: 99 EIIADRVVAEHRPDAKFDEDGYPIPEDLSAVIDFSAAE 136 >UniRef50_Q7VRJ6 DNA-directed RNA polymerase omega chain n=1 Tax=Candidatus Blochmannia floridanus RepID=Q7VRJ6_BLOFL Length = 60 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQ 62 VE+I +RFDL+LVA++ AR +Q + K TVIAL+E+E+ +IN Sbjct: 7 VEEINSRFDLILVASKYARSIQQKENSIQLSSCKHKCTVIALQELEKSMINID 59 >UniRef50_A3EVJ3 Putative DNA-directed RNA polymerase, omega subunit n=2 Tax=Leptospirillum sp. Group II RepID=A3EVJ3_9BACT Length = 134 Score = 53.0 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 5 TVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 ++ + I +R+ LV+ AA+RARQ+ G V + K T AL+EI E I Sbjct: 8 PIEVTPDIIDSRYRLVIAAAKRARQLMEGA-PVRVEKRYLKETTTALQEIVEKKIPIITG 66 Query: 65 DVRERQEQQEQEAAELQA 82 + R E +E +A Sbjct: 67 EEAVRIEAGRREKLRERA 84 >UniRef50_C6I0J5 DNA-directed RNA polymerase, omega subunit n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0J5_9BACT Length = 131 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%) Query: 5 TVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 + A + I +R+ LV+ AA+R RQ+ G P+ K T I L EI + Sbjct: 8 PIDYADDVIDSRYRLVIAAAKRTRQIMEGHA-PVGDWPYHKETTIGLAEILSKSVPIITG 66 Query: 65 DVRERQEQQEQEA 77 EQ+ +EA Sbjct: 67 PAAVVAEQKHKEA 79 >UniRef50_Q2NIH2 DNA-directed RNA polymerase omega chain n=5 Tax=Acholeplasmataceae RepID=Q2NIH2_AYWBP Length = 81 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 + ++ ++KI +++ LV +A++ A ++ K+ N K AL EI + Sbjct: 19 LIYPSIDKLLDKINSKYKLVHIASKTAHVIEAQKKELPELLCN-KVVGKALEEIINDKVK 77 Query: 61 NQ 62 Sbjct: 78 FA 79 >UniRef50_B0G2W0 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G2W0_9FIRM Length = 111 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 36/76 (47%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQ 70 + + +R+ +V+ A+RAR++ G + + +K IA+ E+ +G I + + Sbjct: 14 KVVNSRYSIVMATAKRAREIIDGSMPLVDTKPGEKPLSIAISEMNQGKITILAEEEAAKL 73 Query: 71 EQQEQEAAELQAVTAI 86 + E + AE A Sbjct: 74 AELEAKQAEENAEEDF 89 >UniRef50_B0S136 DNA-directed RNA polymerase subunit omega n=4 Tax=Clostridiales Family XI. Incertae Sedis RepID=RPOZ_FINM2 Length = 65 Score = 48.3 bits (114), Expect = 6e-05, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 M + + E +R+ L ++ ++RAR + G K+ + + + AL E+ E + Sbjct: 1 MINPSFKKLSEINNSRYALCVMVSKRARMLIDG-KETKLKKAKAQPVTTALEEVMEKKV 58 >UniRef50_B0P3M1 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B0P3M1_9CLOT Length = 71 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 29/60 (48%) Query: 11 EKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQ 70 + I +R+ +VL +A+RARQ+ G + ++ K A+ E+ E + D + Sbjct: 12 KVISSRYSIVLASAKRARQIIAGDMPLVEEKDGAKPLSTAVEELWEEKVKILGDDEEAEE 71 >UniRef50_A7VUT9 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VUT9_9CLOT Length = 67 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M+R +V D + +R+ LV+ A+RAR++ +D +K +AL+E + N Sbjct: 1 MSRPSVDDMLSGKQSRYSLVIAVAKRAREIAQTAEDNG-EILTEKPVNMALKEFQAHKFN 59 Query: 61 NQILDVRE 68 D+ E Sbjct: 60 IIEPDINE 67 >UniRef50_A6DHN4 Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DHN4_9BACT Length = 73 Score = 48.3 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEN--DKTTV-----IALRE 53 M + +A+E IG++ LV +AA+RA Q+ G + + ++ V IAL E Sbjct: 1 MENSYIANALEVIGDKNVLVNLAAKRASQINKGDHPLIDTPRDAHNRPLVLSTLEIALIE 60 Query: 54 IEEGLINNQILDV 66 I EG + + ++ Sbjct: 61 IAEGKVTFEHIEA 73 >UniRef50_A8FMX9 DNA-directed RNA polymerase subunit omega n=27 Tax=Epsilonproteobacteria RepID=RPOZ_CAMJ8 Length = 74 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 8 DAVEKIGN-RFDLVLVAARRARQMQVGGKDPLVPEENDKT--TVIALREIEEGLINNQIL 64 A+EK+GN R+ L LV A+RA Q+ G PLV + +K IAL EI E I + L Sbjct: 11 KALEKMGNDRYRLSLVVAKRAEQLANGA-TPLVDFDKNKNKLADIALYEIAENKITLEGL 69 Query: 65 DVRER 69 R Sbjct: 70 VETNR 74 >UniRef50_B5YF48 DNA-directed RNA polymerase subunit omega n=2 Tax=Dictyoglomus RepID=RPOZ_DICT6 Length = 67 Score = 48.0 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 2/69 (2%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M + + + KI N++ L +V +RRARQ+ K ++ ++A+ E+ + I Sbjct: 1 MKEIDIDTLISKIPNKYILTVVISRRARQLFEELK--ILKTVARDPLILAMEEVAQDKIT 58 Query: 61 NQILDVRER 69 E Sbjct: 59 YGEGSDSED 67 >UniRef50_B4DCN8 DNA-directed RNA polymerase, omega subunit n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCN8_9BACT Length = 73 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M +++A + I ++ LV V ++R RQ+ G + + + IAL+EI EG + Sbjct: 1 MTSSLLEEAFKVIPSQQLLVNVVSKRVRQLTAGHRPMVETGPRMGFSDIALKEIIEGKLK 60 Query: 61 NQILDVRERQ 70 + Sbjct: 61 FEAATAESED 70 >UniRef50_Q17Y32 DNA-directed RNA polymerase subunit omega n=15 Tax=Helicobacter RepID=RPOZ_HELAH Length = 74 Score = 47.2 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 6 VQDAVEKIGN-RFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLINNQI 63 V A++ IGN R+ L + R +Q+ G K + + + K IA+REI EG I+ Sbjct: 10 VAQALKNIGNDRYMLDNLVFARVKQLNAGAKTLVNMDPKRHKLVDIAIREIAEGKIDIDR 69 Query: 64 LDVR 67 +D R Sbjct: 70 IDER 73 >UniRef50_Q1J1S9 DNA-directed RNA polymerase subunit omega n=3 Tax=Deinococcus RepID=RPOZ_DEIGD Length = 99 Score = 47.2 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD--PLVPEENDKTTVI-ALREIEEG 57 MA + + +++ L +V A+RA Q++ G P+ + V A+RE+ G Sbjct: 1 MAEKDIDKLLSLTDSKYRLSVVIAKRALQLRSGAPSVLPVEQRVRTRNLVTQAMRELATG 60 Query: 58 LINN 61 + Sbjct: 61 KLTV 64 >UniRef50_C2BWI8 DNA-directed RNA polymerase n=1 Tax=Mobiluncus curtisii ATCC 43063 RepID=C2BWI8_9ACTO Length = 122 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 11/70 (15%) Query: 4 VTVQDAVEKIGNRFDLVLVAARRARQMQVGGKD----------PLVPEE-NDKTTVIALR 52 + D +E + +++ LV AA RARQ+ + PLV +K IA+ Sbjct: 14 PPIDDLLENVDSKYALVAFAAARARQINTYNQQLEAGLLDTIGPLVEHGPREKPLSIAMH 73 Query: 53 EIEEGLINNQ 62 EI +G+++ + Sbjct: 74 EIAQGMLDME 83 >UniRef50_O66570 DNA-directed RNA polymerase subunit omega n=1 Tax=Aquifex aeolicus RepID=RPOZ_AQUAE Length = 76 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND--KTTVIALREIEEG 57 R +++A++++ +R++LV A RR Q+ G+D V E + K T A+ +I EG Sbjct: 4 RPKIEEAMKRVESRYELVHAAVRRTLQLLREGEDFFVQEGGEVHKKTFAAIEDIAEG 60 >UniRef50_B0PFU3 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFU3_9FIRM Length = 68 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M R ++ ++ N + V+ A+RAR++ ++ E +K A+ E G I Sbjct: 1 MLRPSINSIIKPGDNYYSFVVAVAKRAREIAQEQEEEHSLNE-EKPVQKAVEEFAGGKIK 59 Query: 61 N 61 Sbjct: 60 V 60 >UniRef50_UPI0001C36ED6 hypothetical protein RflaF_19293 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36ED6 Length = 69 Score = 46.0 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGL 58 M R V + K + + LV+ A+RAR++ E +K A+ E+ G Sbjct: 1 MLRPAVNQIISKNESCYSLVIAVAKRAREIADELYANGETLE-EKPVKTAVEELASGK 57 >UniRef50_B1ZPJ1 DNA-directed RNA polymerase, omega subunit n=5 Tax=Verrucomicrobia RepID=B1ZPJ1_OPITP Length = 89 Score = 45.6 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 30/59 (50%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRE 68 + I + L+ V +RR +Q++ G + +V E ALREI EG I+ ++ E Sbjct: 10 LTVIPDATILINVVSRRVKQLRRGNRPLVVSLEKLSAEDTALREIAEGKISYELGANEE 68 >UniRef50_Q72ID6 DNA-directed RNA polymerase subunit omega n=4 Tax=Thermus RepID=RPOZ_THET2 Length = 99 Score = 45.6 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 14/90 (15%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKT-------------- 46 MA + + +++ L +V A+RA+Q+ G V E ++ Sbjct: 1 MAEPGIDKLFGMVDSKYRLTVVVAKRAQQLLRHGFKNTVLEPEERPKMQTLEGLFDDPNA 60 Query: 47 TVIALREIEEGLINNQILDVRERQEQQEQE 76 A++E+ G + V E + Q+E E Sbjct: 61 VTWAMKELLTGRLVFGENLVPEDRLQKEME 90 >UniRef50_Q1IK23 DNA-directed RNA polymerase, omega subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IK23_ACIBL Length = 77 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%) Query: 8 DAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVR 67 + + + +LVAARRARQ+Q G P + + K+ IA E++ G I I + + Sbjct: 2 KLMTGFDSNYRYILVAARRARQIQNGAH-PTIDTQTKKSCRIAEEEVKAGNIQWYIPEKK 60 Query: 68 ERQE--QQEQEAAELQA 82 E +++ + A A Sbjct: 61 TAAEIAKEQLDQAIPDA 77 >UniRef50_B5YJ35 DNA-directed RNA polymerase subunit omega n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=RPOZ_THEYD Length = 138 Score = 45.3 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%) Query: 5 TVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQIL 64 ++ KI +R+ L L+AA+RA ++ +G + ++ K T AL EI I+ Sbjct: 14 PIELDRTKIESRYRLALIAAQRAAELSLGA-TAKIDKKGKKVTTTALLEILSNKIDYITG 72 Query: 65 DVRERQEQQEQEAAE 79 + + +++ + Sbjct: 73 EEAVKAKEKIDQIDV 87 >UniRef50_C7MNJ3 DNA-directed RNA polymerase, omega subunit n=4 Tax=Coriobacteriaceae RepID=C7MNJ3_CRYCD Length = 86 Score = 45.3 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 1 MARVTVQDAVEKIGN-RFDLVLVAARRARQMQV------------GGKDPLVPEENDKTT 47 + + +E+ N RF L +A+RRA + + N K Sbjct: 3 LIEPKIDQLLEETDNDRFLLCAIASRRAHDINDMLRGQRDRAIQLQTAVEIARASNKKPL 62 Query: 48 VIALREIEEGLINNQ 62 IA EI +G ++ Sbjct: 63 SIAFDEISKGEVSWD 77 >UniRef50_Q04EL5 DNA-directed RNA polymerase subunit omega n=2 Tax=Oenococcus oeni RepID=RPOZ_OENOB Length = 107 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 36/103 (34%), Gaps = 34/103 (33%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRAR---------------------------------- 28 +V + + K+ +R+ L+ +A++RA+ Sbjct: 5 YPSVDELLNKVDSRYKLIALASKRAKELEELPRLKDELLKLKREEKPTDRDKKQIQEIAA 64 Query: 29 QMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQE 71 Q++ L ++ K AL EI G + ++ + ++ Sbjct: 65 QLETLVGPTLDNYKSVKPIGRALEEINAGNVQIDPVNKDKSED 107 >UniRef50_C1XXM7 DNA-directed RNA polymerase, omega subunit n=2 Tax=Meiothermus RepID=C1XXM7_9DEIN Length = 108 Score = 44.1 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 14/105 (13%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGK----------DPLVPEENDK----T 46 MA + + +++ L +V A+RA+Q+ + E +K Sbjct: 1 MAEPGIDTLLTVTDSKYRLTVVVAKRAQQLLRYQFKNTVLEPSEWPKMRTLEGEKPDPNP 60 Query: 47 TVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 A++E+ G + V E + + + + + R Sbjct: 61 VTWAMQELRTGRLVIGENLVPEDRLSKVLDQMYPREIPEPQPQER 105 >UniRef50_A6Q312 DNA-directed RNA polymerase subunit omega n=2 Tax=Epsilonproteobacteria RepID=RPOZ_NITSB Length = 70 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%) Query: 15 NRFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGLINNQILDVR 67 +R+ L + A+RA ++ G + + V + K T IAL EI EG + ++ Sbjct: 17 DRYLLSIAVAKRANELATGKEPLVEVDVKKYKYTDIALMEIAEGKLKIEVEKES 70 >UniRef50_C3XHT5 Predicted protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XHT5_9HELI Length = 73 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%) Query: 6 VQDAVEKIGN-RFDLVLVAARRARQMQVGGKDPLVPEE----NDKTTVIALREIEEGLIN 60 + A+E+ GN R+ L ++ R +++ VG + L + + IAL+EI +G + Sbjct: 9 IAKALEQTGNDRYKLSVLVFARVKELSVGAQPLLNYPDDYLRKMEPCDIALQEIADGKVT 68 Query: 61 NQI 63 Sbjct: 69 LAN 71 >UniRef50_UPI0001744377 hypothetical protein VspiD_07640 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744377 Length = 69 Score = 42.2 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 29/63 (46%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILD 65 V A + I + L+ + ++R RQ+ G + + IAL+EI EG I + ++ Sbjct: 6 VDKAAQIINDPPVLINMVSKRVRQLNQGRPALVERRPGMREADIALQEIIEGKIKREDIE 65 Query: 66 VRE 68 Sbjct: 66 EIP 68 >UniRef50_C0EFK9 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFK9_9CLOT Length = 73 Score = 41.4 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 1 MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN 60 M R ++ + ++ + + LV+ A+RAR++ D +K +A+ E + Sbjct: 3 MNRPSMAEILKPGESYYSLVVAVAKRAREIVDNACDSG-DIVAEKPVSLAVDEFAKNQCK 61 Query: 61 NQILDVRERQEQ 72 +D + Sbjct: 62 LVEVDDIGDSIE 73 >UniRef50_B4D5N1 DNA-directed RNA polymerase, omega subunit n=2 Tax=Chthoniobacter flavus Ellin428 RepID=B4D5N1_9BACT Length = 88 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%) Query: 6 VQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILD 65 ++ A+ I N LV V +RR RQ+ G + + E IAL E+ +G + + Sbjct: 6 LEKALAVIKNEQYLVNVISRRVRQLSNGHRPMVEIESRMGLADIALMEVIKGKLTYEQTS 65 Query: 66 VRERQE 71 + Sbjct: 66 EYVEEP 71 >UniRef50_C9M8T3 DNA-directed RNA polymerase, omega subunit n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M8T3_9BACT Length = 86 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Query: 13 IGNRFDLVLVAARRARQMQVGGKDPLV-PEENDKTTVIALREIEEGLINNQILDVRERQE 71 I N++ L LV A+RARQ+ P EE++K AL+E+E G ++ V + Sbjct: 15 IQNKYMLTLVIAQRARQLSEMRVAPAEGEEEDEKYISQALQEMESGRLSVSFNTVNPQPL 74 Query: 72 QQEQEAAELQAV 83 E A Sbjct: 75 PGETNGPSSMAE 86 >UniRef50_Q30SN4 RNA polymerase Rpb6 n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30SN4_SULDN Length = 72 Score = 40.6 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%) Query: 6 VQDAVEKI-GN-----RFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLI 59 +++ KI N R+ L + A+R ++ G L + KT +AL EI EGLI Sbjct: 3 IEELTAKILDNNPNMDRYQLAIAVAKRTDELLNGANSKLNVSKKIKTADLALMEIAEGLI 62 >UniRef50_A5ILC9 DNA-directed RNA polymerase subunit omega n=11 Tax=Thermotogaceae RepID=RPOZ_THEP1 Length = 79 Score = 40.2 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 4/63 (6%) Query: 7 QDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDV 66 + ++KI ++ + +V A+RA ++ P V +++ IA E+ +N + Sbjct: 12 DELLKKIPYKYAIPVVVAKRAEAIRE-YAKPFVITDDENPVSIAFMELS---LNYIRIKN 67 Query: 67 RER 69 E Sbjct: 68 EEI 70 >UniRef50_B4U8J2 DNA-directed RNA polymerase, omega subunit n=2 Tax=Aquificaceae RepID=B4U8J2_HYDS0 Length = 75 Score = 40.2 bits (93), Expect = 0.022, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 3 RVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND--KTTVIALREIEEGLIN 60 R + +A++K+ N+++LV A + ++ + + + K T A+ + + + Sbjct: 4 RPKIYEALKKVNNKYELVHAAVKYTEKLMQEDDSSFIRGKRELIKKTFFAINRLADSDME 63 Query: 61 NQILDVRERQ 70 +I + E Sbjct: 64 IKITEENEEI 73 >UniRef50_C1SMS5 DNA-directed RNA polymerase, omega subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMS5_9BACT Length = 83 Score = 39.9 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 4/63 (6%) Query: 6 VQDAVEKIG--NRFDLVLVAARRARQMQV--GGKDPLVPEENDKTTVIALREIEEGLINN 61 ++ +++ +RF LV +A RAR++ G P ++ K T AL EI I Sbjct: 6 IEKIIKQDNLHSRFKLVHIAGLRARELNAPTEGSAPRQNNDHSKVTTTALDEIIRHQIVF 65 Query: 62 QIL 64 + + Sbjct: 66 ERV 68 >UniRef50_D1Y142 Putative DNA-directed RNA polymerase, omega subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y142_9BACT Length = 110 Score = 39.5 bits (91), Expect = 0.032, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 39/95 (41%), Gaps = 4/95 (4%) Query: 1 MARVTVQDAVEKIG--NRFDLVLVAARRARQMQV--GGKDPLVPEENDKTTVIALREIEE 56 M + ++ + N++ L + A+RARQ+ G L +K +AL ++E+ Sbjct: 1 MNFHNLDKIMDNVNVHNKYLLTAIIAQRARQISEVKGVNGILEKHPGEKAISLALCDMED 60 Query: 57 GLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR 91 G ++ Q+ + + +E + R Sbjct: 61 GNVSVQLQTETIPDAIENELESEAAFEEEQKKLER 95 >UniRef50_B3DV23 DNA-directed RNA polymerase, subunit K/omega n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV23_METI4 Length = 83 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 32/66 (48%) Query: 10 VEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLINNQILDVRER 69 + K+ LV + +RR R + G K + IAL+EI EG ++ +++ E+ Sbjct: 17 LAKVEIPEVLVNMVSRRVRLLAKGAKPLVEVPPQWNYMQIALKEIAEGRLSWELVPQEEK 76 Query: 70 QEQQEQ 75 +E + Sbjct: 77 EESSPE 82 >UniRef50_C1TRJ6 DNA-directed RNA polymerase, omega subunit n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRJ6_9BACT Length = 86 Score = 38.7 bits (89), Expect = 0.051, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 2/69 (2%) Query: 13 IGNRFDLVLVAARRARQMQV--GGKDPLVPEENDKTTVIALREIEEGLINNQILDVRERQ 70 + N++ L V A RAR + G + + +K IAL E+E ++ ++ E Sbjct: 15 VSNKYLLTTVVAARARSLSEDRGSRTFEETGKGEKVISIALSELESDKLSVKMGVTGEEG 74 Query: 71 EQQEQEAAE 79 E Sbjct: 75 GVSSDEEPV 83 >UniRef50_B6BNW9 RNA polymerases K / 14 to 18 kDa subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BNW9_9PROT Length = 73 Score = 38.7 bits (89), Expect = 0.052, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 6 VQDAVEKI----GN--RFDLVLVAARRARQMQVGGKDPL-VPEENDKTTVIALREIEEGL 58 V++ K+ N R+ L L A+R+ ++ G L + ++ K +AL EI +GL Sbjct: 3 VEELTAKVLDENPNMDRYQLALAVAKRSDELLNGATSKLNIDPKSIKAADLALMEIAQGL 62 Query: 59 INNQILDVRER 69 I + E+ Sbjct: 63 IKIKGFADLEK 73 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.152 0.428 Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 535,065,511 Number of Sequences: 3077464 Number of extensions: 21246723 Number of successful extensions: 54550 Number of sequences better than 1.0e-01: 169 Number of HSP's better than 0.1 without gapping: 270 Number of HSP's successfully gapped in prelim test: 105 Number of HSP's that attempted gapping in prelim test: 54028 Number of HSP's gapped (non-prelim): 384 length of query: 91 length of database: 1,040,396,356 effective HSP length: 61 effective length of query: 30 effective length of database: 852,671,052 effective search space: 25580131560 effective search space used: 25580131560 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.4 bits) S2: 87 (37.9 bits)