BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (98 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=...   206   2e-52
UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli ...   174   6e-43
UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH...   105   5e-22
UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella...    80   2e-14
UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator ...    67   1e-10
UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_A...    66   3e-10
UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovo...    65   6e-10
UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovo...    62   4e-09
UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkhol...    61   1e-08
UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax...    61   1e-08
UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemoph...    58   1e-07
UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax...    55   8e-07
UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingell...    55   9e-07
UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrath...    54   1e-06
UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudom...    53   3e-06
UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella Re...    53   3e-06
UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro f...    52   4e-06
UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudom...    52   5e-06
UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q...    52   7e-06
UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro f...    52   8e-06
UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella...    51   1e-05
UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkhol...    49   3e-05
UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=...    49   4e-05
UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobac...    49   6e-05
UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkhol...    45   0.001
UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisser...    45   0.001
UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteob...    44   0.001
UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Provide...    44   0.002
UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella...    44   0.002
UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepI...    44   0.002
UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteob...    42   0.005
UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovo...    42   0.008
UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemoph...    40   0.030
UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptosp...    39   0.045
UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Ars...    39   0.047
UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoa...    39   0.047
UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS ...    39   0.049
UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp...    39   0.052
UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylo...    38   0.093

>UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=YDAS_ECOLI
          Length = 98

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC
Sbjct: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60

Query: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
          EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT
Sbjct: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98


>UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli RepID=C8U5T9_ECO10
          Length = 114

 Score =  174 bits (442), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 83/98 (84%), Positives = 90/98 (91%), Gaps = 4/98 (4%)

Query: 1   MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
           MKK+NYSFK+ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERAT+G VLC
Sbjct: 8   MKKDNYSFKRACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATKGGVLC 67

Query: 61  EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
           EELRPD+DW+YLRRS+C SQNMS+KQ ND N    DHT
Sbjct: 68  EELRPDVDWTYLRRSSCYSQNMSMKQPNDEN----DHT 101


>UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH8_PROMH
          Length = 79

 Score =  105 bits (261), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 54/67 (80%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + K+AC  VGGQS MA+ LG+SPP+VNQWI G R++PA RCP IE+ T G V CEELRPD
Sbjct: 9  AIKKACNYVGGQSEMAKRLGISPPTVNQWINGTRKIPARRCPEIEKVTSGVVRCEELRPD 68

Query: 67 IDWSYLR 73
          +DWSYLR
Sbjct: 69 VDWSYLR 75


>UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R7Y7_XYLFA
          Length = 101

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 45/68 (66%)

Query: 16 GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRS 75
          G  S +AR+L VS  +V  WI G + +P ERCPAIERAT   V CEELRPD+DW YLR +
Sbjct: 12 GRASQLARMLSVSSTTVANWISGKKPIPPERCPAIERATVRAVTCEELRPDVDWEYLRGT 71

Query: 76 ACCSQNMS 83
          A   Q  S
Sbjct: 72 AAIDQAKS 79


>UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator n=2
          Tax=Pasteurellaceae RepID=A4NID4_HAEIN
          Length = 75

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK  +Y  KQ     G  + +A+ +G    +V  W KG +++P  RCP IER T G+V C
Sbjct: 1  MKLRDYFEKQG---RGSLTYLAKQMGAKTSNVCLWAKGKKKVPTNRCPDIERITEGKVTC 57

Query: 61 EELRPDIDWSYLRRS 75
          EELRPD++W  LR S
Sbjct: 58 EELRPDVNWGVLRNS 72


>UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_ACIBT
          Length = 82

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   + +F  A    G  SA+AR +GV+P + ++W     ++P +RC  IE  T+G+V  
Sbjct: 1  MTTPHEAFNNAVTFAGSISALARKIGVTPWAASKW--NPEKIPEDRCLKIEEITQGQVKA 58

Query: 61 EELRPDIDWSYLRRSACCSQNMSV 84
          E+LRPDI+W Y+R++    QN SV
Sbjct: 59 EQLRPDINWEYVRKN-LKKQNQSV 81


>UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TPM4_ACIAC
          Length = 86

 Score = 65.1 bits (157), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + ++A    GG + +A  L  +  +V  W  G RQLPAE CP +ER   G V CE+LRPD
Sbjct: 3  AIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPD 62

Query: 67 IDWSYLRRS 75
          +DW+Y+R S
Sbjct: 63 VDWAYIRSS 71


>UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii
          2AN RepID=C5T1S9_ACIDE
          Length = 81

 Score = 62.4 bits (150), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +  QAC  +G Q+ +A+ + V+P  V+QW  GVR +P + C AIERAT G V   +LRPD
Sbjct: 6  AIHQACEQLGSQAGLAKAIDVAPAIVHQWRSGVRPVPVQHCLAIERATNGAVSRRDLRPD 65

Query: 67 IDWSYL 72
           DW  +
Sbjct: 66 -DWHLI 70


>UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JD18_BURVG
          Length = 97

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N S  +A    G  SAMAR LG+S  +V Q  K   ++PAE CP IER   G V CE+L 
Sbjct: 22 NDSIDRAVKHFGSMSAMARHLGLSSYTVIQQWKIAGRVPAEHCPNIERLCGGVVRCEDLN 81

Query: 65 PDIDWSYLRRSA 76
            +DW+++R SA
Sbjct: 82 DRVDWAFVRASA 93


>UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax=Haemophilus
          somnus 2336 RepID=B0UTL6_HAES2
          Length = 81

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + K+   +VG Q+ +A+L  VS PS++ W+KG  ++  +  P++ +AT GEV  E+LRPD
Sbjct: 4  NIKKTINLVGTQTKLAKLCSVSQPSISIWLKG-GKMDVKYIPSLIKATNGEVTPEDLRPD 62

Query: 67 IDWSYLRR 74
          +DW  +R+
Sbjct: 63 VDWEVIRQ 70


>UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          NT127 RepID=C9MCU9_HAEIN
          Length = 81

 Score = 57.8 bits (138), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDW 69
          +A  + G QSA+AR  GVS P+VN W+ G  ++  +  P+I +AT+ EV   ELRPD+DW
Sbjct: 10 KAIEICGSQSALARACGVSQPTVNLWLNG-GKMDVKYIPSIIQATKFEVNPTELRPDVDW 68

Query: 70 SYLRRS 75
            +  S
Sbjct: 69 PTIYES 74


>UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax=Haemophilus
          influenzae RepID=C4F662_HAEIN
          Length = 78

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 41/68 (60%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           ++A  + G Q ++A+  GVS  +VN+W+ G   +  +  P+I +AT+ EV   ELRPD+
Sbjct: 4  IERAVEICGKQKSLAKACGVSQQAVNKWVSGKNNMDVKYIPSIIQATKFEVNPTELRPDV 63

Query: 68 DWSYLRRS 75
          DW  +  S
Sbjct: 64 DWPTIYES 71


>UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GHG9_9NEIS
          Length = 66

 Score = 54.7 bits (130), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          A  V+G Q+++A+ LGV P +VN W +G  ++PAE    IE+ T   V  ++LRPD+
Sbjct: 8  AANVIGSQASLAKELGVHPTTVNSWARGRNKIPAETAIKIEKLTNSVVTRQDLRPDL 64


>UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrathiobacter
          kashmirensis RepID=B4YK26_9BURK
          Length = 79

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 8/77 (10%)

Query: 1  MKKEN----YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG 56
          MKK+N     S   A   VG Q+ +A LL VS  ++ QW +   ++P E CP IE+ T  
Sbjct: 1  MKKKNPRIEESLNAAAKAVGNQARLAELLDVSSSAIWQWKQS--EVPPEHCPEIEKLTG- 57

Query: 57 EVLCEELRPDIDWSYLR 73
           + CE L   +DWSYLR
Sbjct: 58 -IRCENLNSTVDWSYLR 73


>UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1
          RepID=A5W5W3_PSEP1
          Length = 82

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K   + K+A  V+G Q+ +AR L V+ P+VNQW  G R +PA+R   IE  T G V   +
Sbjct: 2  KSAEAAKEASRVLGSQAELARRLNVAAPTVNQWCSGERTVPAKRALQIEALTNGAVNRAD 61

Query: 63 LRPDIDWSYL 72
          L P   W+ +
Sbjct: 62 LCPSFPWNQI 71


>UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella RepID=C5BBP1_EDWI9
          Length = 71

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N   K+A A+ GGQ  +AR  GV  PSV++W++G ++  A     IE AT G++L   +R
Sbjct: 3  NSLIKEAIALAGGQQELARSCGVRQPSVSEWLRGKKKPSAISAKRIELATGGKILAINIR 62

Query: 65 PDI 67
          PD+
Sbjct: 63 PDL 65


>UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7J7H4_ACIF2
          Length = 69

 Score = 52.4 bits (124), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 4/53 (7%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          +GG +A+ARL+G++  +V+QW    + +P ++   IERAT G +  +ELRPDI
Sbjct: 10 LGGPTAVARLIGITKGAVSQW----KAIPVDKAILIERATHGSITRQELRPDI 58


>UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1
          RepID=B0KSE2_PSEPG
          Length = 74

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 34/57 (59%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLR 73
          G +A AR  G S   + Q   G R+  A    +++R T G + CEE+RPDIDW+YLR
Sbjct: 14 GLAAFARHCGTSAGQLKQVAYGNRRASAGLAVSLDRETGGVIRCEEMRPDIDWAYLR 70


>UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q6JIG9_9CAUD
          Length = 104

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG-EVLCEELRPDID- 68
          A ++   Q+  AR +GVSP + + WIK  R+ P E CP +ERA     V+CE LRPD   
Sbjct: 22 AVSLCDSQADFARRVGVSPQAASNWIKRDRRAPIEACPFVERAVDDPRVVCETLRPDYQG 81

Query: 69 WSYLR 73
          W  LR
Sbjct: 82 WVVLR 86


>UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7JAE0_ACIF2
          Length = 74

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 32/50 (64%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q+ +AR LGV+P  V+QWI G   + AER   IE +T G V   ELRPDI
Sbjct: 12 QTLLARKLGVTPGLVSQWITGRTVITAERAAQIELSTNGAVTRAELRPDI 61


>UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R0L1_XYLFA
          Length = 79

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          +G  SA+A  LGV   +++ W +   ++PAERC  IER T G V+C ELRPD+
Sbjct: 11 LGSVSALAASLGVRQSAISNW-RARGRVPAERCIDIERVTNGAVICRELRPDV 62


>UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1
          RepID=C5A7V7_BURGB
          Length = 93

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           K A    GG SA+A  LG+S  ++  +I+     P E CP IE+ ++G+V CE L   +
Sbjct: 14 LKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNP-EHCPEIEKFSQGKVRCEVLNNRV 72

Query: 68 DWSYLR 73
          DW+++R
Sbjct: 73 DWAFIR 78


>UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=Neisseria gonorrhoeae
          FA19 RepID=UPI0001AF7BFA
          Length = 76

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
           +  CA+ G QS +AR  G+SP  ++Q  KG++ +P +    IE++T G V  +E+ PD
Sbjct: 3  LRDYCAIRGNQSDLARKTGISPSFIHQIAKGLKPVPIQSAALIEKSTNGRVTRKEMFPD 61


>UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobacteria
          RepID=B4EWP1_PROMH
          Length = 83

 Score = 48.5 bits (114), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           ++A  +VGGQSA+AR +     +V  W+    ++PAE    IE+AT+G+V   +LRPDI
Sbjct: 11 LRRAIDLVGGQSALARAINSKQQNVWFWLNKSGRVPAEFVLPIEQATQGQVTRSQLRPDI 70


>UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkholderiales
          RepID=A1VPJ4_POLNA
          Length = 187

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 44 AERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQNM-SVKQLNDSNKSSFDHT 98
          AE C  IER +   V+CE LRPDIDW+ +R +A  SQ   ++  + +  K++  H 
Sbjct: 42 AELCINIERESLKSVVCEVLRPDIDWASIRHTAPASQAQEAINTVAEEAKAAILHV 97


>UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisseria gonorrhoeae
          RepID=C1HWP2_NEIGO
          Length = 78

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          S ++A    G +S +AR +GV  P+V  W K     P  RC  IE+ T G V  ++LRPD
Sbjct: 4  SIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPD 63

Query: 67 IDWSYL 72
           DW  +
Sbjct: 64 -DWHLI 68


>UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteobacteria
          RepID=Q1QIT7_NITHX
          Length = 260

 Score = 44.3 bits (103), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 6/61 (9%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
             +A  V GGQ+ +AR +G+S PSV+ W     ++PAER  A+E  T    L  ELRPD
Sbjct: 5  GLDRAIQVAGGQAELARRIGISQPSVSNW----NRVPAERVIAVEAVTGISRL--ELRPD 58

Query: 67 I 67
          +
Sbjct: 59 L 59


>UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2Q6B7_PROST
          Length = 75

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 35/63 (55%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K A  +VG Q  +    G++  +V +W+    ++  E  P I +AT G+V  +++R
Sbjct: 2  NEAIKTAIEIVGTQKKLGEACGITQQAVFKWLHNKAKVSPEHIPLIVKATNGQVKGKDIR 61

Query: 65 PDI 67
          PD+
Sbjct: 62 PDL 64


>UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          RepID=Q9PBL8_XYLFA
          Length = 81

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
            +A  V+G Q A+A LLG+ P  V+QW+   R++       IE AT   +   +LRPDI
Sbjct: 7  IARAVEVLGSQKALADLLGIHPALVSQWVTSRRRVAPRHVLTIESAT--SISRHDLRPDI 64


>UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepID=Q2L2G5_BORA1
          Length = 87

 Score = 43.5 bits (101), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)

Query: 16 GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          G Q A+A+ +GV  P V++W++G R +P E   AIE AT G V  ++  PD
Sbjct: 12 GRQIALAKAIGVHAPDVSRWVRGKRPIPLEYGAAIEIATGGAVTRKDEWPD 62


>UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteobacteria
          RepID=Q0AG04_NITEC
          Length = 83

 Score = 42.4 bits (98), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 20/38 (52%), Positives = 23/38 (60%)

Query: 38 GVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRS 75
          G R+     C  IER + G V CE LRPD+DW YLR S
Sbjct: 35 GYRRAGELLCINIERESGGLVKCETLRPDVDWGYLRNS 72


>UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TN00_ACIAC
          Length = 80

 Score = 41.6 bits (96), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           + A + +GG   +A  +GV   +V+ W        A  C AIERAT G V   +LRPD 
Sbjct: 4  LEAAISAIGGVGKLAEAIGVGQSAVSNWRARGTTPDAAYCVAIERATSGAVSRRDLRPD- 62

Query: 68 DWSYL 72
          DW  +
Sbjct: 63 DWHLI 67


>UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
          RepID=A4N1A6_HAEIN
          Length = 67

 Score = 39.7 bits (91), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 31/52 (59%)

Query: 16 GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          G Q+  AR +G++P  ++Q I G  + P     AIE+AT+ +V   E+ PD+
Sbjct: 13 GFQADFARKIGIAPSFLSQIISGKSKAPPSVAVAIEKATKRQVKKSEILPDV 64


>UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HVZ4_9BACT
          Length = 85

 Score = 38.9 bits (89), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           ++A  +VG Q+ +A++LG     +  W+K    + AE    +E+AT G V   ELRPD+
Sbjct: 7  LRKAIEIVGSQNKLAKILGKRQSVIWAWLKR-GTVSAEYVLKVEQATGGRVTRHELRPDL 65


>UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Arsenophonus
          nasoniae RepID=D2U108_9ENTR
          Length = 72

 Score = 38.9 bits (89), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          +NY  + A  + G Q A+A+  G++  ++  W+ G + +  +  P +   T G V     
Sbjct: 2  KNYGIEAAIKIAGSQKALAKKCGLAQSTICDWLNGKKPVSPKSVPDLVEVTGGTVPAYRF 61

Query: 64 RPDI 67
          RPD+
Sbjct: 62 RPDL 65


>UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4C8R3_9GAMM
          Length = 70

 Score = 38.9 bits (89), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          E    K+A ++  GQ A+A+ +GV+   ++ WI     +PAE    IE  T   V   EL
Sbjct: 3  EQNPLKKAISIAQGQKALAKKIGVTQQCISLWITKNAAVPAEHAIKIE--TETGVSRAEL 60

Query: 64 RPDI 67
          RPD+
Sbjct: 61 RPDL 64


>UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS of Escherichia
          coli n=3 Tax=Enterobacteriaceae RepID=Q7N1J7_PHOLL
          Length = 94

 Score = 38.9 bits (89), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 16 GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDW 69
          G    +A  LGVS   ++Q   G   +P  RC  IE AT G+V  ++LRP  DW
Sbjct: 32 GEAKLLAEKLGVSSSYLSQMAHGYAPVPPARCFDIENATNGKVTRQDLRPH-DW 84


>UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp. SIP3-4
          RepID=C6XEC1_METSD
          Length = 81

 Score = 38.9 bits (89), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 14 VVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          + GG+ A+A  L +S  ++++W+K  R +P ER   +E     ++   E+RPDI
Sbjct: 19 IEGGRPALAAALDISEQAIHKWVKSGR-IPTERVRDVEELINFQITRYEMRPDI 71


>UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylobacterium
          nodulans ORS 2060 RepID=B8IT79_METNO
          Length = 83

 Score = 38.1 bits (87), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          A  +VG Q  +AR  G+S   V++ +   RQ+ A    AIE+AT G++   +LRPD
Sbjct: 10 AIDIVGSQPKLARAAGISQQQVSKLLHCQRQISAGVAIAIEKATAGKIGRWQLRPD 65


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=...   164   1e-39
UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli ...   159   2e-38
UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH...   115   6e-25
UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkhol...   105   4e-22
UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovo...   101   1e-20
UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella...    99   3e-20
UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemoph...    99   3e-20
UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_A...    99   4e-20
UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator ...    98   7e-20
UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax...    95   6e-19
UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisser...    91   7e-18
UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax...    91   9e-18
UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovo...    89   4e-17
UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkhol...    89   6e-17
UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkhol...    86   2e-16
UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrath...    84   1e-15
UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudom...    83   3e-15
UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobac...    82   5e-15
UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q...    81   9e-15
UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingell...    81   1e-14
UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella Re...    81   1e-14
UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudom...    81   1e-14
UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=...    79   3e-14
UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteob...    78   1e-13
UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella...    76   4e-13
UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro f...    74   1e-12
UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro f...    71   1e-11

Sequences not found previously or not previously below threshold:

UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Provide...    76   4e-13
UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Ars...    76   4e-13
UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovo...    72   5e-12
UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptosp...    72   6e-12
UniRef50_B7LNE3 Represror Cro n=6 Tax=Escherichia RepID=B7LNE3_E...    69   5e-11
UniRef50_A7MHP9 Putative uncharacterized protein n=1 Tax=Cronoba...    68   6e-11
UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoa...    67   2e-10
UniRef50_B7LB93 Cro n=22 Tax=root RepID=B7LB93_ECO55                   66   4e-10
UniRef50_B4SNJ4 CI repressor n=1 Tax=Stenotrophomonas maltophili...    66   5e-10
UniRef50_B7LJJ9 Putative uncharacterized protein n=1 Tax=Escheri...    64   1e-09
UniRef50_C6AM32 Antirepressor Cro n=5 Tax=root RepID=C6AM32_AGGAN      64   2e-09
UniRef50_C4K7L6 Phage transcriptional regulatory protein n=1 Tax...    63   2e-09
UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS ...    63   3e-09
UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteob...    62   5e-09
UniRef50_D2U112 Phage regulatory protein n=1 Tax=Arsenophonus na...    61   9e-09
UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylo...    61   1e-08
UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella...    61   1e-08
UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepI...    61   2e-08
UniRef50_D1NX87 Cytoplasmic chaperone TorD n=1 Tax=Providencia r...    59   4e-08
UniRef50_A8PM33 Putative uncharacterized protein n=1 Tax=Rickett...    59   5e-08
UniRef50_A4JMH8 Putative uncharacterized protein n=1 Tax=Burkhol...    58   8e-08
UniRef50_A5UGL7 Putative uncharacterized protein n=5 Tax=Pasteur...    58   8e-08
UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemoph...    58   1e-07
UniRef50_A6WVE7 Putative uncharacterized protein n=1 Tax=Ochroba...    58   1e-07
UniRef50_A9N3H0 Putative uncharacterized protein n=3 Tax=Enterob...    57   2e-07
UniRef50_C8UNK0 Predicted antirepressor protein Cro n=4 Tax=Esch...    57   2e-07
UniRef50_Q4FUH4 Putative uncharacterized protein n=1 Tax=Psychro...    57   2e-07
UniRef50_B5XSM1 Putative uncharacterized protein n=2 Tax=Enterob...    56   5e-07
UniRef50_Q37907 Regulatory protein cro n=3 Tax=root RepID=RCRO_BPD3    55   6e-07
UniRef50_A7JSL2 Putative uncharacterized protein n=2 Tax=Pasteur...    55   8e-07
UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp...    54   1e-06
UniRef50_D1TFB3 Putative uncharacterized protein n=1 Tax=Burkhol...    54   1e-06
UniRef50_D0ZSX1 Putative uncharacterized protein n=1 Tax=Salmone...    54   1e-06
UniRef50_A9YWX8 Putative Cro n=1 Tax=Burkholderia phage Bups phi...    54   2e-06
UniRef50_C0AX08 Putative uncharacterized protein n=1 Tax=Proteus...    54   2e-06
UniRef50_C7LJH3 Phage related protein n=1 Tax=Brucella microti C...    54   2e-06
UniRef50_B8F4M6 Phage transcriptional regulatory protein/antirep...    52   4e-06
UniRef50_B7KSY7 Putative chaperone n=1 Tax=Methylobacterium chlo...    52   4e-06
UniRef50_B1G5M8 Putative uncharacterized protein n=1 Tax=Burkhol...    52   5e-06
UniRef50_C3X1S2 Predicted protein n=1 Tax=Oxalobacter formigenes...    52   7e-06
UniRef50_C6RL40 Putative uncharacterized protein n=2 Tax=Acineto...    52   7e-06
UniRef50_UPI00016AD132 hypothetical protein Bpse38_34097 n=1 Tax...    52   7e-06
UniRef50_B7KYS5 Putative uncharacterized protein n=1 Tax=Methylo...    51   9e-06
UniRef50_D0FT83 Lambda repressor-like protein n=1 Tax=Erwinia py...    51   1e-05
UniRef50_Q93E25 LygE n=1 Tax=Salmonella enterica subsp. enterica...    51   1e-05
UniRef50_D2TX41 Phage regulatory protein n=1 Tax=Arsenophonus na...    49   3e-05
UniRef50_C8U3E2 Predicted antirepressor protein Cro n=1 Tax=Esch...    49   3e-05
UniRef50_UPI0001B52E27 hypothetical protein ShiD9_12110 n=1 Tax=...    49   4e-05
UniRef50_Q6J1N2 Gp45 n=1 Tax=Burkholderia phage BcepC6B RepID=Q6...    49   4e-05
UniRef50_B1J5K2 Putative uncharacterized protein n=1 Tax=Pseudom...    49   5e-05
UniRef50_C8U3V4 Predicted antirepressor protein Cro n=19 Tax=Ent...    48   7e-05
UniRef50_C5CJM5 Putative uncharacterized protein n=1 Tax=Variovo...    48   9e-05
UniRef50_C7BGF8 Putative uncharacterized protein n=2 Tax=root Re...    47   1e-04
UniRef50_C8UC34 Predicted antirepressor protein Cro n=2 Tax=Esch...    46   3e-04
UniRef50_A4SLB6 Phage transcriptional regulator, Cro-like protei...    46   3e-04
UniRef50_Q2SPC5 Uncharacterized protein conserved in bacteria, p...    46   3e-04
UniRef50_B7UQF7 Predicted protein n=3 Tax=Escherichia coli RepID...    46   4e-04
UniRef50_C2DWU1 LygE protein n=2 Tax=Escherichia RepID=C2DWU1_ECOLX    46   5e-04
UniRef50_C6M779 Conserved domain protein n=3 Tax=Proteobacteria ...    45   6e-04
UniRef50_B0VKG4 Putative uncharacterized protein n=3 Tax=Acineto...    45   6e-04
UniRef50_Q083R5 Uncharacterized protein n=1 Tax=Shewanella frigi...    45   7e-04
UniRef50_Q88MM1 Transcriptional regulator, Cro/CI family n=4 Tax...    45   8e-04
UniRef50_A1TVQ0 Putative uncharacterized protein n=2 Tax=Acidovo...    45   8e-04
UniRef50_A7C750 Putative uncharacterized protein n=1 Tax=Beggiat...    44   0.001
UniRef50_Q2P3J1 Phage-related protein n=1 Tax=Xanthomonas oryzae...    44   0.002
UniRef50_A7FIY8 Putative uncharacterized protein n=2 Tax=Enterob...    44   0.002
UniRef50_P14816 Gene 30 protein n=2 Tax=root RepID=VG30_BPPH8          44   0.002
UniRef50_A9BV81 Putative uncharacterized protein n=1 Tax=Delftia...    44   0.002
UniRef50_C4TVB5 Gp45 n=1 Tax=Yersinia kristensenii ATCC 33638 Re...    44   0.002
UniRef50_C4U3C1 Putative uncharacterized protein n=1 Tax=Yersini...    43   0.002
UniRef50_P75975 Uncharacterized protein ymfT n=13 Tax=root RepID...    43   0.002
UniRef50_C6XEC2 Putative phage repressor n=1 Tax=Methylovorus sp...    43   0.003
UniRef50_A1W3Z6 Putative uncharacterized protein n=2 Tax=Acidovo...    42   0.005
UniRef50_B1M2M6 Transcriptional regulator, XRE family n=1 Tax=Me...    42   0.006
UniRef50_P09964 Regulatory protein cro n=16 Tax=root RepID=RCRO_...    42   0.006
UniRef50_B8IIS9 Putative plasmid maintenance system antidote pro...    42   0.008
UniRef50_B8INW8 Transcriptional regulator, XRE family n=1 Tax=Me...    42   0.008
UniRef50_D2UAK5 Hypothetical phage-related protein n=2 Tax=Xanth...    41   0.018
UniRef50_B7QPX1 Putative uncharacterized protein n=1 Tax=Ruegeri...    40   0.029
UniRef50_Q1DAJ1 Putative transposase n=1 Tax=Myxococcus xanthus ...    39   0.041
UniRef50_A3IX74 Zinc finger protein n=1 Tax=Cyanothece sp. CCY01...    38   0.099

>UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=YDAS_ECOLI
          Length = 98

 Score =  164 bits (414), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC
Sbjct: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60

Query: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
          EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT
Sbjct: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98


>UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli RepID=C8U5T9_ECO10
          Length = 114

 Score =  159 bits (402), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/98 (84%), Positives = 90/98 (91%), Gaps = 4/98 (4%)

Query: 1   MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
           MKK+NYSFK+ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERAT+G VLC
Sbjct: 8   MKKDNYSFKRACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATKGGVLC 67

Query: 61  EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
           EELRPD+DW+YLRRS+C SQNMS+KQ ND N    DHT
Sbjct: 68  EELRPDVDWTYLRRSSCYSQNMSMKQPNDEN----DHT 101


>UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH8_PROMH
          Length = 79

 Score =  115 bits (287), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 55/69 (79%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + K+AC  VGGQS MA+ LG+SPP+VNQWI G R++PA RCP IE+ T G V CEELRPD
Sbjct: 9  AIKKACNYVGGQSEMAKRLGISPPTVNQWINGTRKIPARRCPEIEKVTSGVVRCEELRPD 68

Query: 67 IDWSYLRRS 75
          +DWSYLR +
Sbjct: 69 VDWSYLRGT 77


>UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JD18_BURVG
          Length = 97

 Score =  105 bits (262), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N S  +A    G  SAMAR LG+S  +V Q  K   ++PAE CP IER   G V CE+L 
Sbjct: 22 NDSIDRAVKHFGSMSAMARHLGLSSYTVIQQWKIAGRVPAEHCPNIERLCGGVVRCEDLN 81

Query: 65 PDIDWSYLRRSA 76
            +DW+++R SA
Sbjct: 82 DRVDWAFVRASA 93


>UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TPM4_ACIAC
          Length = 86

 Score =  101 bits (250), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + ++A    GG + +A  L  +  +V  W  G RQLPAE CP +ER   G V CE+LRPD
Sbjct: 3  AIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPD 62

Query: 67 IDWSYLRRS 75
          +DW+Y+R S
Sbjct: 63 VDWAYIRSS 71


>UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R7Y7_XYLFA
          Length = 101

 Score = 99.5 bits (246), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/71 (53%), Positives = 45/71 (63%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
             G  S +AR+L VS  +V  WI G + +P ERCPAIERAT   V CEELRPD+DW YL
Sbjct: 9  QERGRASQLARMLSVSSTTVANWISGKKPIPPERCPAIERATVRAVTCEELRPDVDWEYL 68

Query: 73 RRSACCSQNMS 83
          R +A   Q  S
Sbjct: 69 RGTAAIDQAKS 79


>UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          NT127 RepID=C9MCU9_HAEIN
          Length = 81

 Score = 99.5 bits (246), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   +    +A  + G QSA+AR  GVS P+VN W+ G  ++  +  P+I +AT+ EV  
Sbjct: 1  MSSMSEYVNKAIEICGSQSALARACGVSQPTVNLWLNG-GKMDVKYIPSIIQATKFEVNP 59

Query: 61 EELRPDIDWSYLRRS 75
           ELRPD+DW  +  S
Sbjct: 60 TELRPDVDWPTIYES 74


>UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_ACIBT
          Length = 82

 Score = 99.1 bits (245), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   + +F  A    G  SA+AR +GV+P + ++W     ++P +RC  IE  T+G+V  
Sbjct: 1  MTTPHEAFNNAVTFAGSISALARKIGVTPWAASKW--NPEKIPEDRCLKIEEITQGQVKA 58

Query: 61 EELRPDIDWSYLRRSACCSQNMSVK 85
          E+LRPDI+W Y+R++    QN SV 
Sbjct: 59 EQLRPDINWEYVRKN-LKKQNQSVS 82


>UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator n=2
          Tax=Pasteurellaceae RepID=A4NID4_HAEIN
          Length = 75

 Score = 98.3 bits (243), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK  +Y  KQ     G  + +A+ +G    +V  W KG +++P  RCP IER T G+V C
Sbjct: 1  MKLRDYFEKQG---RGSLTYLAKQMGAKTSNVCLWAKGKKKVPTNRCPDIERITEGKVTC 57

Query: 61 EELRPDIDWSYLRRS 75
          EELRPD++W  LR S
Sbjct: 58 EELRPDVNWGVLRNS 72


>UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax=Haemophilus
          influenzae RepID=C4F662_HAEIN
          Length = 78

 Score = 95.3 bits (235), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             ++A  + G Q ++A+  GVS  +VN+W+ G   +  +  P+I +AT+ EV   ELRP
Sbjct: 2  SGIERAVEICGKQKSLAKACGVSQQAVNKWVSGKNNMDVKYIPSIIQATKFEVNPTELRP 61

Query: 66 DIDWSYLRRS 75
          D+DW  +  S
Sbjct: 62 DVDWPTIYES 71


>UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisseria gonorrhoeae
          RepID=C1HWP2_NEIGO
          Length = 78

 Score = 91.4 bits (225), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          S ++A    G +S +AR +GV  P+V  W K     P  RC  IE+ T G V  ++LRPD
Sbjct: 4  SIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPD 63

Query: 67 IDWSYLRRSACCSQNM 82
           DW  +       Q  
Sbjct: 64 -DWHLIWPELAGDQPK 78


>UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax=Haemophilus
          somnus 2336 RepID=B0UTL6_HAES2
          Length = 81

 Score = 91.0 bits (224), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          + + K+   +VG Q+ +A+L  VS PS++ W+KG  ++  +  P++ +AT GEV  E+LR
Sbjct: 2  DKNIKKTINLVGTQTKLAKLCSVSQPSISIWLKG-GKMDVKYIPSLIKATNGEVTPEDLR 60

Query: 65 PDIDWSYLRR 74
          PD+DW  +R+
Sbjct: 61 PDVDWEVIRQ 70


>UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii
          2AN RepID=C5T1S9_ACIDE
          Length = 81

 Score = 89.1 bits (219), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           +  QAC  +G Q+ +A+ + V+P  V+QW  GVR +P + C AIERAT G V   +LRP
Sbjct: 5  QAIHQACEQLGSQAGLAKAIDVAPAIVHQWRSGVRPVPVQHCLAIERATNGAVSRRDLRP 64

Query: 66 DIDWSYL 72
          D DW  +
Sbjct: 65 D-DWHLI 70


>UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1
          RepID=C5A7V7_BURGB
          Length = 93

 Score = 88.7 bits (218), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 1/66 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           K A    GG SA+A  LG+S  ++  +I+     P E CP IE+ ++G+V CE L   +
Sbjct: 14 LKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNP-EHCPEIEKFSQGKVRCEVLNNRV 72

Query: 68 DWSYLR 73
          DW+++R
Sbjct: 73 DWAFIR 78


>UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkholderiales
          RepID=A1VPJ4_POLNA
          Length = 187

 Score = 86.4 bits (212), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
          Q A A   G +   + +     +++ AE C  IER +   V+CE LRPDIDW+ +R +A 
Sbjct: 16 QKAFALRCGTTVGYLRKAGSTGQRIGAELCINIERESLKSVVCEVLRPDIDWASIRHTAP 75

Query: 78 CSQNM-SVKQLNDSNKSSFDHT 98
           SQ   ++  + +  K++  H 
Sbjct: 76 ASQAQEAINTVAEEAKAAILHV 97


>UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrathiobacter
          kashmirensis RepID=B4YK26_9BURK
          Length = 79

 Score = 84.1 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 8/83 (9%)

Query: 1  MKKEN----YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG 56
          MKK+N     S   A   VG Q+ +A LL VS  ++ QW +   ++P E CP IE+ T  
Sbjct: 1  MKKKNPRIEESLNAAAKAVGNQARLAELLDVSSSAIWQWKQS--EVPPEHCPEIEKLTG- 57

Query: 57 EVLCEELRPDIDWSYLRRSACCS 79
           + CE L   +DWSYLR +    
Sbjct: 58 -IRCENLNSTVDWSYLRGTEPNK 79


>UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1
          RepID=A5W5W3_PSEP1
          Length = 82

 Score = 82.9 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K   + K+A  V+G Q+ +AR L V+ P+VNQW  G R +PA+R   IE  T G V   +
Sbjct: 2  KSAEAAKEASRVLGSQAELARRLNVAAPTVNQWCSGERTVPAKRALQIEALTNGAVNRAD 61

Query: 63 LRPDIDWSYLRRS 75
          L P   W+ +  +
Sbjct: 62 LCPSFPWNQIDSN 74


>UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobacteria
          RepID=B4EWP1_PROMH
          Length = 83

 Score = 82.2 bits (201), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           ++A  +VGGQSA+AR +     +V  W+    ++PAE    IE+AT+G+V   +LRPDI
Sbjct: 11 LRRAIDLVGGQSALARAINSKQQNVWFWLNKSGRVPAEFVLPIEQATQGQVTRSQLRPDI 70


>UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q6JIG9_9CAUD
          Length = 104

 Score = 81.4 bits (199), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG-EVLCEELRPDID- 68
          A ++   Q+  AR +GVSP + + WIK  R+ P E CP +ERA     V+CE LRPD   
Sbjct: 22 AVSLCDSQADFARRVGVSPQAASNWIKRDRRAPIEACPFVERAVDDPRVVCETLRPDYQG 81

Query: 69 WSYLRR 74
          W  LR+
Sbjct: 82 WVVLRQ 87


>UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GHG9_9NEIS
          Length = 66

 Score = 81.0 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           +   A  V+G Q+++A+ LGV P +VN W +G  ++PAE    IE+ T   V  ++LRP
Sbjct: 3  DAILLAANVIGSQASLAKELGVHPTTVNSWARGRNKIPAETAIKIEKLTNSVVTRQDLRP 62

Query: 66 DI 67
          D+
Sbjct: 63 DL 64


>UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella RepID=C5BBP1_EDWI9
          Length = 71

 Score = 81.0 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 39/63 (61%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N   K+A A+ GGQ  +AR  GV  PSV++W++G ++  A     IE AT G++L   +R
Sbjct: 3  NSLIKEAIALAGGQQELARSCGVRQPSVSEWLRGKKKPSAISAKRIELATGGKILAINIR 62

Query: 65 PDI 67
          PD+
Sbjct: 63 PDL 65


>UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1
          RepID=B0KSE2_PSEPG
          Length = 74

 Score = 81.0 bits (198), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRS 75
          G +A AR  G S   + Q   G R+  A    +++R T G + CEE+RPDIDW+YLR +
Sbjct: 14 GLAAFARHCGTSAGQLKQVAYGNRRASAGLAVSLDRETGGVIRCEEMRPDIDWAYLRNA 72


>UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=Neisseria gonorrhoeae
          FA19 RepID=UPI0001AF7BFA
          Length = 76

 Score = 79.5 bits (194), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           +  CA+ G QS +AR  G+SP  ++Q  KG++ +P +    IE++T G V  +E+ PD 
Sbjct: 3  LRDYCAIRGNQSDLARKTGISPSFIHQIAKGLKPVPIQSAALIEKSTNGRVTRKEMFPDT 62

Query: 68 DWSYLRRSACCSQNM 82
           W  +       Q  
Sbjct: 63 -WHLIWPELADDQPK 76


>UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteobacteria
          RepID=Q1QIT7_NITHX
          Length = 260

 Score = 77.9 bits (190), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 6/64 (9%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
           +    +A  V GGQ+ +AR +G+S PSV+ W     ++PAER  A+E  T   +   EL
Sbjct: 2  RDSGLDRAIQVAGGQAELARRIGISQPSVSNW----NRVPAERVIAVEAVTG--ISRLEL 55

Query: 64 RPDI 67
          RPD+
Sbjct: 56 RPDL 59


>UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R0L1_XYLFA
          Length = 79

 Score = 76.0 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +   A   +G  SA+A  LGV   +++ W +   ++PAERC  IER T G V+C ELRPD
Sbjct: 3  AIDIAINKLGSVSALAASLGVRQSAISNW-RARGRVPAERCIDIERVTNGAVICRELRPD 61

Query: 67 I 67
          +
Sbjct: 62 V 62


>UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2Q6B7_PROST
          Length = 75

 Score = 76.0 bits (185), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K A  +VG Q  +    G++  +V +W+    ++  E  P I +AT G+V  +++R
Sbjct: 2  NEAIKTAIEIVGTQKKLGEACGITQQAVFKWLHNKAKVSPEHIPLIVKATNGQVKGKDIR 61

Query: 65 PDID--W 69
          PD+   W
Sbjct: 62 PDLPHLW 68


>UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Arsenophonus
          nasoniae RepID=D2U108_9ENTR
          Length = 72

 Score = 75.6 bits (184), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 32/65 (49%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          +NY  + A  + G Q A+A+  G++  ++  W+ G + +  +  P +   T G V     
Sbjct: 2  KNYGIEAAIKIAGSQKALAKKCGLAQSTICDWLNGKKPVSPKSVPDLVEVTGGTVPAYRF 61

Query: 64 RPDID 68
          RPD+ 
Sbjct: 62 RPDLP 66


>UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7JAE0_ACIF2
          Length = 74

 Score = 74.1 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           Q+ +AR LGV+P  V+QWI G   + AER   IE +T G V   ELRPDI
Sbjct: 11 SQTLLARKLGVTPGLVSQWITGRTVITAERAAQIELSTNGAVTRAELRPDI 61


>UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TN00_ACIAC
          Length = 80

 Score = 72.1 bits (175), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           + A + +GG   +A  +GV   +V+ W        A  C AIERAT G V   +LRPD 
Sbjct: 4  LEAAISAIGGVGKLAEAIGVGQSAVSNWRARGTTPDAAYCVAIERATSGAVSRRDLRPD- 62

Query: 68 DWSYL 72
          DW  +
Sbjct: 63 DWHLI 67


>UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HVZ4_9BACT
          Length = 85

 Score = 71.8 bits (174), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K     ++A  +VG Q+ +A++LG     +  W+K    + AE    +E+AT G V   E
Sbjct: 2  KPTSPLRKAIEIVGSQNKLAKILGKRQSVIWAWLK-RGTVSAEYVLKVEQATGGRVTRHE 60

Query: 63 LRPDI 67
          LRPD+
Sbjct: 61 LRPDL 65


>UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7J7H4_ACIF2
          Length = 69

 Score = 70.6 bits (171), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
             +GG +A+ARL+G++  +V+QW    + +P ++   IERAT G +  +ELRPDI
Sbjct: 7  IKSLGGPTAVARLIGITKGAVSQW----KAIPVDKAILIERATHGSITRQELRPDI 58


>UniRef50_B7LNE3 Represror Cro n=6 Tax=Escherichia RepID=B7LNE3_ESCF3
          Length = 77

 Score = 68.7 bits (166), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   N + + A ++ G Q  +A L GV+ P+V +W+ G   + A     I  AT G++  
Sbjct: 1  MIMTNQTIQLAISITGSQKRLADLCGVAQPTVWRWLHGGG-IDARYVMKIVSATGGKIKP 59

Query: 61 EELRPDI 67
           ++RPD+
Sbjct: 60 ADIRPDL 66


>UniRef50_A7MHP9 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii
          ATCC BAA-894 RepID=A7MHP9_ENTS8
          Length = 73

 Score = 68.3 bits (165), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERAT 54
          M  E  +  +A  + GGQS +AR +       V    V  W+   ++ P +   +IE+ T
Sbjct: 1  MTPEQSALTEAIEIAGGQSELARKISLEAGGLVKQQQVWNWLHREKKAPIKHTVSIEKLT 60

Query: 55 RGEVLCEELRPDI 67
             V  E+LRPD+
Sbjct: 61 G--VPKEKLRPDV 71


>UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4C8R3_9GAMM
          Length = 70

 Score = 67.1 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M ++N   K+A ++  GQ A+A+ +GV+   ++ WI     +PAE    IE  T   V  
Sbjct: 1  MTEQN-PLKKAISIAQGQKALAKKIGVTQQCISLWITKNAAVPAEHAIKIETETG--VSR 57

Query: 61 EELRPDI 67
           ELRPD+
Sbjct: 58 AELRPDL 64


>UniRef50_B7LB93 Cro n=22 Tax=root RepID=B7LB93_ECO55
          Length = 76

 Score = 66.0 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K A  +VG Q  +     VS  +V +W+    ++  E   +I  AT G V   ++R
Sbjct: 2  NPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIR 61

Query: 65 PDID 68
          PD+ 
Sbjct: 62 PDLP 65


>UniRef50_B4SNJ4 CI repressor n=1 Tax=Stenotrophomonas maltophilia R551-3
          RepID=B4SNJ4_STRM5
          Length = 143

 Score = 65.6 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           +  +A    GG +++A  LGV   +V+ W +   ++P      IE  T   V   +L P
Sbjct: 2  DALDRAVKAAGGVTSLATHLGVRQSAVSNW-RSRGRVPPAMAIPIESVTG--VSRHDLCP 58

Query: 66 DI 67
          DI
Sbjct: 59 DI 60


>UniRef50_B7LJJ9 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii
          ATCC 35469 RepID=B7LJJ9_ESCF3
          Length = 82

 Score = 64.4 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERAT 54
          M  E  +  +A A+ GGQS +AR L       V    V  W+   ++ PA+    IE+ T
Sbjct: 1  MTPEQLALSEAIALAGGQSELARKLTASSGHLVKQQHVWNWLNREKRPPAKLSIFIEKTT 60

Query: 55 RGEVLCEELRPDI 67
             +  E+LRPDI
Sbjct: 61 G--ISKEKLRPDI 71


>UniRef50_C6AM32 Antirepressor Cro n=5 Tax=root RepID=C6AM32_AGGAN
          Length = 70

 Score = 63.7 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          +N + ++A ++ G Q  +++  GVS  SV+ W+ G   + A+  P I +AT+G+V  +++
Sbjct: 2  KNEAIEKAISICGSQVKLSQECGVSQVSVSFWLNGGG-INAKYIPRIVKATKGKVTEKQI 60


>UniRef50_C4K7L6 Phage transcriptional regulatory protein n=1 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K7L6_HAMD5
          Length = 152

 Score = 63.3 bits (152), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K+A  +V GQ  +A L GV  P+V +W+ G   +      +I  ++ GE+   EL 
Sbjct: 2  NKAIKKAIKIVRGQKKLADLCGVKQPTVWRWLHGGG-ITFRYLKSIVESSGGEIKPHELN 60

Query: 65 PDIDWSYLRRSACCSQNMSVKQLND 89
           D +  YL  +   SQ  +     D
Sbjct: 61 KDFE-KYLFINMIFSQCRAKSNPKD 84


>UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS of Escherichia
          coli n=3 Tax=Enterobacteriaceae RepID=Q7N1J7_PHOLL
          Length = 94

 Score = 62.9 bits (151), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 1  MKKENY--SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          MK  +Y  + K+     G    +A  LGVS   ++Q   G   +P  RC  IE AT G+V
Sbjct: 20 MKLNDYISNLKR-----GEAKLLAEKLGVSSSYLSQMAHGYAPVPPARCFDIENATNGKV 74

Query: 59 LCEELRPDIDWSYL 72
            ++LRP  DW  +
Sbjct: 75 TRQDLRPH-DWQKI 87


>UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteobacteria
          RepID=Q0AG04_NITEC
          Length = 83

 Score = 62.1 bits (149), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 28/61 (45%)

Query: 20 AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCS 79
            A     S   +     G R+     C  IER + G V CE LRPD+DW YLR S   +
Sbjct: 17 DFAVCCETSFAHLRNIAYGYRRAGELLCINIERESGGLVKCETLRPDVDWGYLRNSRPQT 76

Query: 80 Q 80
          +
Sbjct: 77 K 77


>UniRef50_D2U112 Phage regulatory protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2U112_9ENTR
          Length = 78

 Score = 61.4 bits (147), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKG-VRQLPAERCPAIERATRGEVLCEELR 64
           + K+   V G  + +A  LGVS  +V+QW      ++P +R  AI   T   +   ELR
Sbjct: 2  SALKKVINVTGTATRLAAALGVSNMTVSQWKNKYKGRVPVDRVLAIYELTG--ITPHELR 59

Query: 65 PDI 67
          PDI
Sbjct: 60 PDI 62


>UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylobacterium
          nodulans ORS 2060 RepID=B8IT79_METNO
          Length = 83

 Score = 61.4 bits (147), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
           +     A  +VG Q  +AR  G+S   V++ +   RQ+ A    AIE+AT G++   +L
Sbjct: 3  RHPHIALAIDIVGSQPKLARAAGISQQQVSKLLHCQRQISAGVAIAIEKATAGKIGRWQL 62

Query: 64 RPDIDW 69
          RPD  W
Sbjct: 63 RPDY-W 67


>UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          RepID=Q9PBL8_XYLFA
          Length = 81

 Score = 61.0 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
            +A  V+G Q A+A LLG+ P  V+QW+   R++       IE AT   +   +LRPDI
Sbjct: 7  IARAVEVLGSQKALADLLGIHPALVSQWVTSRRRVAPRHVLTIESAT--SISRHDLRPDI 64


>UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepID=Q2L2G5_BORA1
          Length = 87

 Score = 60.6 bits (145), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
             G Q A+A+ +GV  P V++W++G R +P E   AIE AT G V  ++  PD
Sbjct: 9  QKRGRQIALAKAIGVHAPDVSRWVRGKRPIPLEYGAAIEIATGGAVTRKDEWPD 62


>UniRef50_D1NX87 Cytoplasmic chaperone TorD n=1 Tax=Providencia rustigianii DSM
          4541 RepID=D1NX87_9ENTR
          Length = 78

 Score = 59.0 bits (141), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 7  SFKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
            ++A    GGQ+ +A+ +       V    +  W+   +++PA++   +ERA+   V  
Sbjct: 12 GLQKAIDATGGQTQLAKRISDISNKPVKQQQIWNWLNRNKRVPADKVLIVERASG--VSR 69

Query: 61 EELRPDI 67
            LRPD+
Sbjct: 70 NTLRPDL 76


>UniRef50_A8PM33 Putative uncharacterized protein n=1 Tax=Rickettsiella grylli
          RepID=A8PM33_9COXI
          Length = 296

 Score = 58.7 bits (140), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
            +A   +G    MA+ LG+    +  WIKG  ++P E    IE  T GE+  ++L P
Sbjct: 6  LDKAIYSLGSVRHMAKKLGIHREHIYAWIKGFSKIPLEYALQIEYLTGGEINWKDLVP 63


>UniRef50_A4JMH8 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JMH8_BURVG
          Length = 94

 Score = 58.3 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 21 MARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
           A   G +   +   I G R+   + C AIER + G V   +LRPD DW  +
Sbjct: 32 FAARCGTTAAFLRNVIYGQRKAGEKLCVAIERESGGVVTRRDLRPD-DWHLI 82


>UniRef50_A5UGL7 Putative uncharacterized protein n=5 Tax=Pasteurellaceae
          RepID=A5UGL7_HAEIG
          Length = 68

 Score = 58.3 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          +N +   A    G Q  +A   GV+  +V  W+KG   +  +  P I +A+ G+V   ++
Sbjct: 2  QNETINLAIQECGTQKKLANACGVTQGAVALWLKGGG-INGKYIPLIAKASNGKVTETDI 60


>UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
          RepID=A4N1A6_HAEIN
          Length = 67

 Score = 57.5 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  + Y   +     G Q+  AR +G++P  ++Q I G  + P     AIE+AT+ +V  
Sbjct: 1  MSLKAYFSDKP---RGFQADFARKIGIAPSFLSQIISGKSKAPPSVAVAIEKATKRQVKK 57

Query: 61 EELRPDI 67
           E+ PD+
Sbjct: 58 SEILPDV 64


>UniRef50_A6WVE7 Putative uncharacterized protein n=1 Tax=Ochrobactrum anthropi
          ATCC 49188 RepID=A6WVE7_OCHA4
          Length = 79

 Score = 57.5 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
              +A   VGG  A+AR L +   ++  W    +++PAER   IER +   +   ELRP
Sbjct: 18 EIVAKAAEEVGGVVALARALNIKHTAMYSW----KRVPAERVLEIERVSG--ISRHELRP 71

Query: 66 DI 67
          D+
Sbjct: 72 DL 73


>UniRef50_A9N3H0 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=A9N3H0_SALPB
          Length = 85

 Score = 57.1 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKG-VRQLPAERCPAIERATRGEVLCEELRP 65
            ++A    G  S +A LLG+ P SV++W       +P  R   I + T   +   ELRP
Sbjct: 10 GLEKAIKKAGNASNLAALLGIKPMSVSRWKTRYNGAVPPGRVLPIFKITG--ITPHELRP 67

Query: 66 DI 67
          DI
Sbjct: 68 DI 69


>UniRef50_C8UNK0 Predicted antirepressor protein Cro n=4 Tax=Escherichia coli
          RepID=C8UNK0_ECO1A
          Length = 100

 Score = 57.1 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
          VG     A  LGVS   ++Q   G   +   R   IE AT G+V   ELRP  DW  +
Sbjct: 12 VGDAKKFAARLGVSSSYLSQMASGRTAISPTRALMIESATEGQVSRAELRPH-DWELI 68


>UniRef50_Q4FUH4 Putative uncharacterized protein n=1 Tax=Psychrobacter arcticus
          273-4 RepID=Q4FUH4_PSYA2
          Length = 84

 Score = 56.7 bits (135), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
              +  +A    GGQ+ +A L+G    +V QW+    +  A     I   T   +   E
Sbjct: 7  TPKQALAKAVKKAGGQTELANLIGTKQQNVWQWLNRDGKASARYVSKISEKTN--IPSYE 64

Query: 63 LRPDI 67
          LRPDI
Sbjct: 65 LRPDI 69


>UniRef50_B5XSM1 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=B5XSM1_KLEP3
          Length = 71

 Score = 55.6 bits (132), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +   A  V G  + +A  LGVS  +V+QW K    +P+ R   +  AT   V   ELRPD
Sbjct: 3  ALDNAIRVAGSANKLASTLGVSGMAVSQW-KTKGIVPSSRVLQVFNATG--VTPHELRPD 59

Query: 67 I 67
          +
Sbjct: 60 L 60


>UniRef50_Q37907 Regulatory protein cro n=3 Tax=root RepID=RCRO_BPD3
          Length = 73

 Score = 55.2 bits (131), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDID 68
          K+  A  G Q   A  LGV   +V+ W++G   +        +  T G+   E+L P   
Sbjct: 6  KELVAHFGTQDETAAKLGVDQSTVSGWVRGKHGMSPVVAKRAQVLTDGKFKKEDLCPAFP 65

Query: 69 WSYLRRSA 76
          W  L   A
Sbjct: 66 WEVLSAVA 73


>UniRef50_A7JSL2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae
          RepID=A7JSL2_PASHA
          Length = 66

 Score = 54.8 bits (130), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDW 69
           G ++  A+ LG+S   + Q   G   +PA     IE  T GEV   ELRPD+ W
Sbjct: 12 RGFKADFAKKLGISKSYLRQVETGYSPMPAYLAKKIEEVTNGEVAKSELRPDL-W 65


>UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp. SIP3-4
          RepID=C6XEC1_METSD
          Length = 81

 Score = 54.4 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 16 GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          GG+ A+A  L +S  ++++W+K   ++P ER   +E     ++   E+RPDI
Sbjct: 21 GGRPALAAALDISEQAIHKWVK-SGRIPTERVRDVEELINFQITRYEMRPDI 71


>UniRef50_D1TFB3 Putative uncharacterized protein n=1 Tax=Burkholderia sp.
          CCGE1002 RepID=D1TFB3_9BURK
          Length = 97

 Score = 54.4 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
           G    +A  +GVS   ++Q   G+  +  ERC  IE+AT G V   +L+P  +W  L
Sbjct: 12 RGTAKKLASSIGVSQSFLSQMASGLSPISQERCFLIEQATAGAVARWDLKPH-NWHKL 68


>UniRef50_D0ZSX1 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S
          RepID=D0ZSX1_SALT1
          Length = 86

 Score = 54.4 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKG-VRQLPAERCPAIERATRGEVLCEELRP 65
          +  +A    G  + +A LL VS  +++ W       +PA+R   I  AT   V   ELRP
Sbjct: 9  AIDKAITRAGTATRLAELLEVSAMTISHWRNRYQGVVPADRVLPIYSATG--VTPHELRP 66

Query: 66 DI 67
          D+
Sbjct: 67 DL 68


>UniRef50_A9YWX8 Putative Cro n=1 Tax=Burkholderia phage Bups phi1
          RepID=A9YWX8_9CAUD
          Length = 103

 Score = 53.7 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + + A    G QSA+ARL+G   P +++W+     +  E C  +  A    +   + RP 
Sbjct: 10 ALQAAIQKAGSQSALARLIGKKQPHIHKWLHSPNAMRPENCVLVGNAVG--IPYRDFRPT 67

Query: 67 IDWSYL 72
           DW  +
Sbjct: 68 -DWHLI 72


>UniRef50_C0AX08 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC
          35198 RepID=C0AX08_9ENTR
          Length = 77

 Score = 53.7 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
          M +ENY+ ++A   +G  SA++R+ G  SP SV  WIK   ++PAER   +       V 
Sbjct: 1  MHQENYT-EKAIRTIGVPSAVSRMFGFNSPQSVFNWIK-NNKVPAERVIQLCELGGWVVS 58

Query: 60 CEELRPDI 67
            +LRPD+
Sbjct: 59 PHQLRPDL 66


>UniRef50_C7LJH3 Phage related protein n=1 Tax=Brucella microti CCM 4915
           RepID=C7LJH3_BRUMC
          Length = 192

 Score = 53.7 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 11  ACAVVGGQSAMARLLGVSP-PSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           A    GG  A+AR LG+    SV  W    +++PA+    IE  T   + C ELRPDI
Sbjct: 127 AIQAAGGVVALARGLGIKHHQSVYGW----KKIPADYVLRIEALTG--IPCCELRPDI 178


>UniRef50_B8F4M6 Phage transcriptional regulatory protein/antirepressor Cro n=1
          Tax=Haemophilus parasuis SH0165 RepID=B8F4M6_HAEPS
          Length = 66

 Score = 52.5 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N    +A +  G +  +A   GVS  +V+ W++G   + A+    I  AT G++  +E+
Sbjct: 2  NKVIDKAISECGSRDKLATACGVSVMTVSNWVRGFG-IKAKHIKLISDATNGKISVDEI 59


>UniRef50_B7KSY7 Putative chaperone n=1 Tax=Methylobacterium chloromethanicum CM4
          RepID=B7KSY7_METC4
          Length = 77

 Score = 52.5 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
           + +  +A    GG  A+   +G+S  +++QW     + P  R  A+E A+   V   EL
Sbjct: 2  SDVALSRAIKEAGGPKALGDAIGISSQAISQW----TECPPRRVLAVEAASG--VSRHEL 55

Query: 64 RPDI 67
          RPD+
Sbjct: 56 RPDL 59


>UniRef50_B1G5M8 Putative uncharacterized protein n=1 Tax=Burkholderia graminis
          C4D1M RepID=B1G5M8_9BURK
          Length = 102

 Score = 52.1 bits (123), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 7  SFKQACAVVGGQSAMARLLG----VSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          + ++A  + G +  +AR +      +   ++ W      +P +  P +  A  G+V   E
Sbjct: 14 ALQKAIEICGSRRELARRISLFSPCTSGRIDMWFSRNTVVPIDAVPFVAAAVDGQVSVYE 73

Query: 63 LRPDI--DWSYLRR 74
          L P+    W  LR 
Sbjct: 74 LCPEYAEGWRVLRA 87


>UniRef50_C3X1S2 Predicted protein n=1 Tax=Oxalobacter formigenes HOxBLS
          RepID=C3X1S2_OXAFO
          Length = 90

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
            F +A  + GG + ++R + +      Q  +G  +LP      I  AT G V  +++ P
Sbjct: 3  EEFNKAIQICGGLTKLSRAIDMPVSFAWQIKEGKSRLPEGYGRRIFDATHGAVSLKKMFP 62

Query: 66 DIDW 69
          D  W
Sbjct: 63 D-SW 65


>UniRef50_C6RL40 Putative uncharacterized protein n=2 Tax=Acinetobacter
          RepID=C6RL40_ACIRA
          Length = 82

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 29/60 (48%)

Query: 20 AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCS 79
            A+    S   +NQ + G  +  A     I++ + G V C+ L P+ D++Y+R  A  +
Sbjct: 23 DFAKRCQTSLGYLNQIMYGNSKCSASLAIKIDKESDGAVSCDLLCPEADFNYVRNQALIA 82


>UniRef50_UPI00016AD132 hypothetical protein Bpse38_34097 n=1 Tax=Burkholderia
          thailandensis MSMB43 RepID=UPI00016AD132
          Length = 84

 Score = 51.7 bits (122), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +  +A    G QSA+ARL+G   P +++W+     +  E C  +  A    +   + RP 
Sbjct: 10 ALLRAIEKAGSQSALARLIGKKQPHIHKWLHSPNAMRPENCVLVGAAVG--IPYRDFRP- 66

Query: 67 IDWSYL 72
           DW  +
Sbjct: 67 YDWKLI 72


>UniRef50_B7KYS5 Putative uncharacterized protein n=1 Tax=Methylobacterium
          chloromethanicum CM4 RepID=B7KYS5_METC4
          Length = 82

 Score = 51.3 bits (121), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             + A  ++G ++ +    GV+  ++ +  K   ++  E    IE+ATR  +    LRP
Sbjct: 5  SLIQAAITLLGSEAKLGAACGVTQGAIWK-AKTAGRVSGELAVKIEKATRCAIPRWRLRP 63

Query: 66 DI 67
          D+
Sbjct: 64 DL 65


>UniRef50_D0FT83 Lambda repressor-like protein n=1 Tax=Erwinia pyrifoliae
          RepID=D0FT83_ERWPY
          Length = 74

 Score = 51.3 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N   ++A  +VG Q  +A+ +GV+  +V++W+ G   + ++   A+  AT G V  EE+
Sbjct: 2  NIVIQKAIDIVGSQRELAQKVGVNQSAVSKWLCGGG-IRSKYITALVIATNGTVTFEEI 59


>UniRef50_Q93E25 LygE n=1 Tax=Salmonella enterica subsp. enterica serovar
          Enteritidis RepID=Q93E25_SALEN
          Length = 118

 Score = 50.6 bits (119), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  + Y  K        QS +A L G S   ++    G  QL  E+   I  AT  EV  
Sbjct: 1  MTLDEYLKKNRVR----QSCLATLAGCSQSMISLVTTGRSQLSPEKVLRIAEATNFEVTP 56

Query: 61 EELRPD 66
           ELRPD
Sbjct: 57 HELRPD 62


>UniRef50_D2TX41 Phage regulatory protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2TX41_9ENTR
          Length = 96

 Score = 49.4 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           K     +  QS + R LG  P +++ W +   ++PAE   ++ +    ++   ELRPDI
Sbjct: 23 LKNKIFAITTQSELGRKLGKRPQTISVWFR--NRVPAECVFSMAKVLEWQITPHELRPDI 80


>UniRef50_C8U3E2 Predicted antirepressor protein Cro n=1 Tax=Escherichia coli
          O103:H2 str. 12009 RepID=C8U3E2_ECO10
          Length = 90

 Score = 49.4 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q+A+AR LGV+P +VNQW      +PA     +      +V    LRPD+
Sbjct: 15 QNAIARNLGVTPQAVNQWFS-KNTIPARFVLRVCEVVAWKVTPHGLRPDL 63


>UniRef50_UPI0001B52E27 hypothetical protein ShiD9_12110 n=1 Tax=Shigella sp. D9
          RepID=UPI0001B52E27
          Length = 87

 Score = 49.4 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          M  +NY+ ++A    G   S +AR  G  S  SV  W+    Q+P+ER   +       V
Sbjct: 1  MSSQNYT-EKAVKAAGKSLSEVARRFGFKSTQSVANWV-INNQVPSERVLQLCELGNWSV 58

Query: 59 LCEELRPDI 67
             ELRPDI
Sbjct: 59 TPHELRPDI 67


>UniRef50_Q6J1N2 Gp45 n=1 Tax=Burkholderia phage BcepC6B RepID=Q6J1N2_9CAUD
          Length = 72

 Score = 49.0 bits (115), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             K A    GG + +A   G+S  S+ +WI    ++P +R   + R T  +    +L P
Sbjct: 2  SLIKDAVTEAGGATVVATAFGISRISIYEWID-KGRVPEKRVLPLARLTNWKFTPHQLAP 60


>UniRef50_B1J5K2 Putative uncharacterized protein n=1 Tax=Pseudomonas putida W619
          RepID=B1J5K2_PSEPW
          Length = 103

 Score = 49.0 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
            +++     GGQ   A  L V+  +V+ W++G   + AE     +R T G     ELRP
Sbjct: 7  EIYQRLVEHFGGQDLTAAALKVNQSTVSGWVRGKHAMSAETAFLAQRKTCGAFSAIELRP 66

Query: 66 DI 67
           +
Sbjct: 67 SL 68


>UniRef50_C8U3V4 Predicted antirepressor protein Cro n=19 Tax=Enterobacteriaceae
          RepID=C8U3V4_ECO10
          Length = 90

 Score = 48.3 bits (113), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           S ++       Q+ + R +GV+  +V QW      +P ++   + +  + EV   E+RP
Sbjct: 3  DSTREKIRQKYTQAEIGRYMGVAQQTVWQWFSFG--VPPKQVIPLCQLMKWEVTPHEIRP 60

Query: 66 DI 67
          DI
Sbjct: 61 DI 62


>UniRef50_C5CJM5 Putative uncharacterized protein n=1 Tax=Variovorax paradoxus
          S110 RepID=C5CJM5_VARPS
          Length = 81

 Score = 47.9 bits (112), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 9  KQACAVVG-GQSAMARLLGVS-PPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          ++   + G   + +AR+LG     +V  W  G+   P   C  +E   +G++  +ELRP 
Sbjct: 8  RKVLKLAGNSHAEVARILGYEDRRNVWPWTNGLNPFPPYHCRTLEDHFKGQITRKELRPH 67

Query: 67 IDW 69
           DW
Sbjct: 68 -DW 69


>UniRef50_C7BGF8 Putative uncharacterized protein n=2 Tax=root RepID=C7BGF8_9CAUD
          Length = 79

 Score = 47.5 bits (111), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR-----PDIDW 69
           G    +A  +G     ++ W    R +P      IER T G+V   +L      PDI W
Sbjct: 11 RGRLVKLAAAIGAHASDLSAWANKKRPVPIPFGWPIERETDGQVRRVDLFSADVIPDI-W 69

Query: 70 SYL 72
            L
Sbjct: 70 PEL 72


>UniRef50_C8UC34 Predicted antirepressor protein Cro n=2 Tax=Escherichia coli
          RepID=C8UC34_ECO1A
          Length = 85

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q+A+AR +GV+P +VN W      +P+     +      +V    LRPD+
Sbjct: 16 QNAIARYIGVTPQAVNLWFS-KNSVPSRFVLRVCELVEWKVTPHGLRPDL 64


>UniRef50_A4SLB6 Phage transcriptional regulator, Cro-like protein n=1
          Tax=Aeromonas salmonicida subsp. salmonicida A449
          RepID=A4SLB6_AERS4
          Length = 62

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          + A +  G  + +AR L +S P+V++W      +P  R   IE  T G++  ++
Sbjct: 4  EDAISYFGSAAELARNLNISEPAVSRWGDI---IPKGRAYQIEVLTGGKLKADQ 54


>UniRef50_Q2SPC5 Uncharacterized protein conserved in bacteria, prophage-related
          n=9 Tax=Gammaproteobacteria RepID=Q2SPC5_HAHCH
          Length = 64

 Score = 46.3 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
           A A  GG+S +A  LGV+P SV+Q       LP  R   +ER T G++ 
Sbjct: 5  DAVAYFGGKSKLANALGVAPASVSQ---RGEFLPMLRAYQVERMTGGKLR 51


>UniRef50_B7UQF7 Predicted protein n=3 Tax=Escherichia coli RepID=B7UQF7_ECO27
          Length = 93

 Score = 45.9 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
          Q   A   G S   + + +   + L A  C  IERA+ GEV  ++LRP  DW  +
Sbjct: 16 QRMFACECGTSIGYLRKALSKGQVLGASLCVLIERASNGEVTRQQLRP-FDWMNI 69


>UniRef50_C2DWU1 LygE protein n=2 Tax=Escherichia RepID=C2DWU1_ECOLX
          Length = 91

 Score = 45.6 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   +Y  ++       Q    +L G+S   V++ + G  +   E+   +   T  EV  
Sbjct: 1  MNLRDYLKEKHIT----QLQFGKLTGLSQVHVSRVLGGYERFSPEKALRVAEVTNFEVTP 56

Query: 61 EELRPDI 67
           ELRPDI
Sbjct: 57 HELRPDI 63


>UniRef50_C6M779 Conserved domain protein n=3 Tax=Proteobacteria
          RepID=C6M779_NEISI
          Length = 61

 Score = 45.2 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
                G +SA A+ L VSP +V QW      +P ++   IE+ T G++ 
Sbjct: 5  DVLKFFGSKSATAQHLDVSPSAVTQWKDI---IPEKQAYRIEKITNGKLK 51


>UniRef50_B0VKG4 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B0VKG4_ACIBS
          Length = 83

 Score = 45.2 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCP--AIERATRGEVLCEELRPD--I 67
             +GG +A+ARLLG++PPSV+ W    + +P ++    A+     G    +EL PD   
Sbjct: 7  IDKLGGVTAVARLLGITPPSVSGW----KAIPLDKKIRLAVIAEDLGLTTRKELFPDNYQ 62

Query: 68 D-WSYLRRSACCSQN 81
          D W  LR     S+N
Sbjct: 63 DIWIELRPQTTKSKN 77


>UniRef50_Q083R5 Uncharacterized protein n=1 Tax=Shewanella frigidimarina NCIMB
          400 RepID=Q083R5_SHEFN
          Length = 61

 Score = 45.2 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
             A  GGQ  +A++L VS P++++W      +P  R   I+  T G++ 
Sbjct: 5  DVIAHFGGQGRLAKVLDVSQPAISKW---GDTVPLLRAYQIQVITNGKLK 51


>UniRef50_Q88MM1 Transcriptional regulator, Cro/CI family n=4
          Tax=Gammaproteobacteria RepID=Q88MM1_PSEPK
          Length = 58

 Score = 44.8 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          QA    G  SA+A+ LGV+  +V QW      +P  R   IER T+G +  
Sbjct: 5  QAIQHFGSISALAKALGVTYEAVRQWAD----VPELRQYQIERLTKGALKA 51


>UniRef50_A1TVQ0 Putative uncharacterized protein n=2 Tax=Acidovorax
          RepID=A1TVQ0_ACIAC
          Length = 84

 Score = 44.8 bits (104), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 28 SPPSVNQWIKG-VRQLP-AERCPAIERATRGEVLCEELRPDIDWSYL 72
          S   + QW  G  R++P    C AIE+AT G+V  ++LRP  DW+ +
Sbjct: 31 SDAQIRQWQHGYARRIPSPLNCVAIEQATGGQVTRKDLRPH-DWAAI 76


>UniRef50_A7C750 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS
          RepID=A7C750_9GAMM
          Length = 110

 Score = 44.4 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 3  KENYSFKQACAVVG--GQSAMARLLGVSPPSVNQWIKGVRQLPAERCP---------AIE 51
          KEN   K+  + +G   Q   A  +GVSP +VN+W +G  ++P E             IE
Sbjct: 2  KENIDLKREISELGFESQKKFAEFMGVSPRTVNRWCRGFSKVPREVVSLCTTLREKQRIE 61

Query: 52 RATRGEVLCEELR-PD---IDWS 70
          R  +  V     R PD   ++W 
Sbjct: 62 REVKKIVEEGYSRLPDGRMVNWH 84


>UniRef50_Q2P3J1 Phage-related protein n=1 Tax=Xanthomonas oryzae pv. oryzae MAFF
          311018 RepID=Q2P3J1_XANOM
          Length = 140

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          ++ G    +A  +G+S  +++QW  G + +P ER   + R   
Sbjct: 14 SLRGSLRGLAEQMGISSGALSQWKLGNKPIPDERIQQLARIAG 56


>UniRef50_A7FIY8 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=A7FIY8_YERP3
          Length = 68

 Score = 44.0 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKK     K      GG    A  LG+  P+V +W      +P ++   IER T G    
Sbjct: 1  MKK-----KDVVKFFGGVVNTAIALGIKHPAVCRW---GEIIPEKQAMRIERITHG---- 48

Query: 61 EELRPDIDWSYLRRSACCSQNMSV 84
           ELR D     + +S+    N  +
Sbjct: 49 -ELRYD---PAMYQSSLIKINTQI 68


>UniRef50_P14816 Gene 30 protein n=2 Tax=root RepID=VG30_BPPH8
          Length = 73

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 2  KKENYS--FKQACAVVGG-QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          KK N S   ++A   VGG Q  +A  +GV+P ++N   K    LP  +    E  T   +
Sbjct: 4  KKSNASTPLEKAINAVGGSQKVLAEKVGVTPQAINMLKKRGGSLPVTKMRKYEEVTG--L 61

Query: 59 LCEELRPDI 67
            E L P I
Sbjct: 62 PREVLYPGI 70


>UniRef50_A9BV81 Putative uncharacterized protein n=1 Tax=Delftia acidovorans
          SPH-1 RepID=A9BV81_DELAS
          Length = 99

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVR 40
              +A A  G Q  +A  +GV    V+ W  G R
Sbjct: 5  ELIDKAVAAAGSQVKLAEKMGVKQQEVSSWRTGKR 39


>UniRef50_C4TVB5 Gp45 n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TVB5_YERKR
          Length = 82

 Score = 43.6 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 9  KQACAVVGGQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           +A   VG  S ++R     S  SV  WI    Q+PA+R   +    + EV   ELRPDI
Sbjct: 10 DRAIRAVGSLSRVSRAFEFKSVQSVANWI-INNQVPADRVIQLCAMGKWEVTPHELRPDI 68


>UniRef50_C4U3C1 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii
          ATCC 33638 RepID=C4U3C1_YERKR
          Length = 72

 Score = 43.3 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 2  KKENYSFKQACAVVGG-QSAMARLLGVSPPSVNQWI-KGVRQLPAERCPAIERATRGEVL 59
          +      ++A   VGG Q  +A+ LGVS  ++     +G   LP +R     R T   + 
Sbjct: 3  ETPMTPLEKAVQAVGGKQKTLAQRLGVSEQAITLMKQRGKGYLPRKRIEDFVRVTG--LK 60

Query: 60 CEELRPDI 67
           E+L PD+
Sbjct: 61 KEDLYPDV 68


>UniRef50_P75975 Uncharacterized protein ymfT n=13 Tax=root RepID=YMFT_ECOLI
          Length = 66

 Score = 43.3 bits (100), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q  +A  +G +P  +     G ++        +E+ T G +   +LRPDI
Sbjct: 13 QGELAGKVGSTPGYLRLVFNGYKKASFVLAKKLEQYTSGAITKSDLRPDI 62


>UniRef50_C6XEC2 Putative phage repressor n=1 Tax=Methylovorus sp. SIP3-4
          RepID=C6XEC2_METSD
          Length = 226

 Score = 42.9 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR--GE 57
          M +     K+A    G  Q+ +A   GVS  +V++WI G  Q+  E    I +     G 
Sbjct: 1  MNEVGKLIKEALEHQGKTQAWLAEFCGVSNNAVSKWINGSGQISRE---NIRKVANALGL 57

Query: 58 VLCEELRPDID 68
             E L  D D
Sbjct: 58 RASELLNTDTD 68


>UniRef50_A1W3Z6 Putative uncharacterized protein n=2 Tax=Acidovorax
          RepID=A1W3Z6_ACISJ
          Length = 97

 Score = 42.1 bits (97), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPA 44
          M + N+  ++A ++ G +  +A++LG+  P++  W  G R   A
Sbjct: 4  MSQLNFLIEKAASIAGSEYKLAQMLGMQQPTITAWKTGKRPCSA 47


>UniRef50_B1M2M6 Transcriptional regulator, XRE family n=1 Tax=Methylobacterium
          radiotolerans JCM 2831 RepID=B1M2M6_METRJ
          Length = 84

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 23/44 (52%)

Query: 19 SAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          +  A ++G +  +V +++ G R+   ++   IER T G V   +
Sbjct: 19 TEFAAMIGATQAAVTRYVNGRRKPSLDKLILIERVTEGAVRALD 62


>UniRef50_P09964 Regulatory protein cro n=16 Tax=root RepID=RCRO_BPP22
          Length = 61

 Score = 42.1 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K      G Q A+A+ LG+S  +V+QW      +P +    +E  T G +  +E
Sbjct: 4  KDVIDHFGTQRAVAKALGISDAAVSQW---KEVIPEKDAYRLEIVTAGALKYQE 54


>UniRef50_B8IIS9 Putative plasmid maintenance system antidote protein, XRE family
          n=1 Tax=Methylobacterium nodulans ORS 2060
          RepID=B8IIS9_METNO
          Length = 81

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 7  SFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          + +Q     G   S +A  +G +  ++++ ++G R +  +    +ER T G V  ++
Sbjct: 3  ALEQYFEETGDNVSKLAERMGRAATTISRPLRGERNVSLDIALDVERVTGGRVTADQ 59


>UniRef50_B8INW8 Transcriptional regulator, XRE family n=1 Tax=Methylobacterium
          nodulans ORS 2060 RepID=B8INW8_METNO
          Length = 79

 Score = 41.7 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK   Y   +        S  A  +GV+  ++ ++  G R+   +    I RAT G+V  
Sbjct: 1  MKLAAYLADREIK----DSDFAARIGVTRQTLWRYKSGERRPEWDVLERISRATDGQVTP 56

Query: 61 EELRPDID 68
           +   D  
Sbjct: 57 NDFLSDAP 64


>UniRef50_D2UAK5 Hypothetical phage-related protein n=2 Tax=Xanthomonas
          albilineans RepID=D2UAK5_XANAL
          Length = 275

 Score = 40.6 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 21/43 (48%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          ++ G    +A  +G+S   ++QW  G + +P ER   + +   
Sbjct: 14 SLRGSLRGLAEQMGISSGVLSQWKLGNKPIPDERIQQLAKIAG 56


>UniRef50_B7QPX1 Putative uncharacterized protein n=1 Tax=Ruegeria sp. R11
          RepID=B7QPX1_9RHOB
          Length = 74

 Score = 39.8 bits (91), Expect = 0.029,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCE 61
          Q+  A  +GVS   +++   G  +   +    IERAT G V   
Sbjct: 15 QADFAEQVGVSQGVISRLANGASKPGLDLAVRIERATAGSVSAS 58


>UniRef50_Q1DAJ1 Putative transposase n=1 Tax=Myxococcus xanthus DK 1622
          RepID=Q1DAJ1_MYXXD
          Length = 183

 Score = 39.0 bits (89), Expect = 0.041,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 26/40 (65%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG 56
           ++A+AR +GVS P+++QW++  R++ A   P  E+   G
Sbjct: 22 SEAALARQVGVSQPTLSQWLREARRVAAMTPPPEEKKPAG 61


>UniRef50_A3IX74 Zinc finger protein n=1 Tax=Cyanothece sp. CCY0110
           RepID=A3IX74_9CHRO
          Length = 461

 Score = 37.9 bits (86), Expect = 0.099,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 16  GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAI 50
           G  +A+AR L +   +V  W KG  Q   E    I
Sbjct: 264 GNIAALARYLKMRKNTVWLWCKGKNQPSLEALLRI 298


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=...   148   5e-35
UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli ...   141   5e-33
UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH...   107   9e-23
UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemoph...   100   1e-20
UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella...   100   2e-20
UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisser...    99   5e-20
UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_A...    97   1e-19
UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkhol...    96   3e-19
UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovo...    94   2e-18
UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax...    94   2e-18
UniRef50_C4K7L6 Phage transcriptional regulatory protein n=1 Tax...    92   4e-18
UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovo...    92   4e-18
UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator ...    92   7e-18
UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax...    90   2e-17
UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkhol...    89   5e-17
UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Provide...    87   2e-16
UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobac...    87   2e-16
UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovo...    86   3e-16
UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Ars...    85   5e-16
UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=...    85   8e-16
UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS ...    85   8e-16
UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudom...    83   2e-15
UniRef50_B7LNE3 Represror Cro n=6 Tax=Escherichia RepID=B7LNE3_E...    83   2e-15
UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptosp...    83   3e-15
UniRef50_B7LB93 Cro n=22 Tax=root RepID=B7LB93_ECO55                   82   4e-15
UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteob...    82   5e-15
UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella...    80   2e-14
UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrath...    80   2e-14
UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingell...    80   3e-14
UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkhol...    78   6e-14
UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoa...    78   6e-14
UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudom...    78   7e-14
UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella Re...    77   2e-13
UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteob...    77   3e-13
UniRef50_C8UNK0 Predicted antirepressor protein Cro n=4 Tax=Esch...    76   3e-13
UniRef50_D2U112 Phage regulatory protein n=1 Tax=Arsenophonus na...    75   6e-13
UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylo...    75   6e-13
UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro f...    75   6e-13
UniRef50_B4SNJ4 CI repressor n=1 Tax=Stenotrophomonas maltophili...    75   7e-13
UniRef50_A7MHP9 Putative uncharacterized protein n=1 Tax=Cronoba...    75   8e-13
UniRef50_A9N3H0 Putative uncharacterized protein n=3 Tax=Enterob...    74   1e-12
UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q...    74   1e-12
UniRef50_D1TFB3 Putative uncharacterized protein n=1 Tax=Burkhol...    74   2e-12
UniRef50_C6AM32 Antirepressor Cro n=5 Tax=root RepID=C6AM32_AGGAN      73   2e-12
UniRef50_A8PM33 Putative uncharacterized protein n=1 Tax=Rickett...    73   4e-12
UniRef50_A9YWX8 Putative Cro n=1 Tax=Burkholderia phage Bups phi...    72   4e-12
UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro f...    72   7e-12
UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella...    72   7e-12
UniRef50_B5XSM1 Putative uncharacterized protein n=2 Tax=Enterob...    72   8e-12
UniRef50_Q37907 Regulatory protein cro n=3 Tax=root RepID=RCRO_BPD3    71   9e-12
UniRef50_A4JMH8 Putative uncharacterized protein n=1 Tax=Burkhol...    71   1e-11
UniRef50_B7LJJ9 Putative uncharacterized protein n=1 Tax=Escheri...    71   1e-11
UniRef50_C0AX08 Putative uncharacterized protein n=1 Tax=Proteus...    71   1e-11
UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepI...    70   2e-11
UniRef50_A7JSL2 Putative uncharacterized protein n=2 Tax=Pasteur...    70   2e-11
UniRef50_D0ZSX1 Putative uncharacterized protein n=1 Tax=Salmone...    70   2e-11
UniRef50_Q93E25 LygE n=1 Tax=Salmonella enterica subsp. enterica...    70   2e-11
UniRef50_UPI00016AD132 hypothetical protein Bpse38_34097 n=1 Tax...    69   4e-11
UniRef50_C2DWU1 LygE protein n=2 Tax=Escherichia RepID=C2DWU1_ECOLX    69   5e-11
UniRef50_Q4FUH4 Putative uncharacterized protein n=1 Tax=Psychro...    69   5e-11
UniRef50_A5UGL7 Putative uncharacterized protein n=5 Tax=Pasteur...    69   5e-11
UniRef50_UPI0001B52E27 hypothetical protein ShiD9_12110 n=1 Tax=...    67   1e-10
UniRef50_C8U3V4 Predicted antirepressor protein Cro n=19 Tax=Ent...    67   1e-10
UniRef50_B7KSY7 Putative chaperone n=1 Tax=Methylobacterium chlo...    67   2e-10
UniRef50_B8F4M6 Phage transcriptional regulatory protein/antirep...    67   2e-10
UniRef50_A6WVE7 Putative uncharacterized protein n=1 Tax=Ochroba...    66   3e-10
UniRef50_D1NX87 Cytoplasmic chaperone TorD n=1 Tax=Providencia r...    66   3e-10
UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemoph...    66   4e-10
UniRef50_D2TX41 Phage regulatory protein n=1 Tax=Arsenophonus na...    66   4e-10
UniRef50_B7UQF7 Predicted protein n=3 Tax=Escherichia coli RepID...    65   5e-10
UniRef50_B7KYS5 Putative uncharacterized protein n=1 Tax=Methylo...    65   8e-10
UniRef50_D0FT83 Lambda repressor-like protein n=1 Tax=Erwinia py...    65   9e-10
UniRef50_B1G5M8 Putative uncharacterized protein n=1 Tax=Burkhol...    64   1e-09
UniRef50_C3X1S2 Predicted protein n=1 Tax=Oxalobacter formigenes...    64   1e-09
UniRef50_Q6J1N2 Gp45 n=1 Tax=Burkholderia phage BcepC6B RepID=Q6...    64   1e-09
UniRef50_C8U3E2 Predicted antirepressor protein Cro n=1 Tax=Esch...    64   1e-09
UniRef50_C7LJH3 Phage related protein n=1 Tax=Brucella microti C...    63   2e-09
UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp...    63   3e-09
UniRef50_C5CJM5 Putative uncharacterized protein n=1 Tax=Variovo...    62   4e-09
UniRef50_B1J5K2 Putative uncharacterized protein n=1 Tax=Pseudom...    62   6e-09
UniRef50_C8UC34 Predicted antirepressor protein Cro n=2 Tax=Esch...    62   7e-09
UniRef50_C6RL40 Putative uncharacterized protein n=2 Tax=Acineto...    62   9e-09
UniRef50_A1TVQ0 Putative uncharacterized protein n=2 Tax=Acidovo...    57   1e-07
UniRef50_A7FIY8 Putative uncharacterized protein n=2 Tax=Enterob...    57   2e-07
UniRef50_C7BGF8 Putative uncharacterized protein n=2 Tax=root Re...    56   4e-07
UniRef50_A7C750 Putative uncharacterized protein n=1 Tax=Beggiat...    56   4e-07
UniRef50_B0VKG4 Putative uncharacterized protein n=3 Tax=Acineto...    54   1e-06
UniRef50_A4SLB6 Phage transcriptional regulator, Cro-like protei...    54   2e-06
UniRef50_P14816 Gene 30 protein n=2 Tax=root RepID=VG30_BPPH8          53   3e-06
UniRef50_Q88MM1 Transcriptional regulator, Cro/CI family n=4 Tax...    53   3e-06
UniRef50_Q083R5 Uncharacterized protein n=1 Tax=Shewanella frigi...    52   4e-06
UniRef50_C6M779 Conserved domain protein n=3 Tax=Proteobacteria ...    51   1e-05
UniRef50_Q2SPC5 Uncharacterized protein conserved in bacteria, p...    50   2e-05
UniRef50_A9BV81 Putative uncharacterized protein n=1 Tax=Delftia...    48   6e-05
UniRef50_Q2P3J1 Phage-related protein n=1 Tax=Xanthomonas oryzae...    48   8e-05

Sequences not found previously or not previously below threshold:

UniRef50_C4TVB5 Gp45 n=1 Tax=Yersinia kristensenii ATCC 33638 Re...    58   8e-08
UniRef50_D2U4K7 Phage transcriptional regulator n=1 Tax=Arsenoph...    57   1e-07
UniRef50_B0QXI3 Putative uncharacterized protein n=1 Tax=Haemoph...    54   2e-06
UniRef50_B4EFR1 Hypothetical phage protein n=1 Tax=Burkholderia ...    52   5e-06
UniRef50_P09964 Regulatory protein cro n=16 Tax=root RepID=RCRO_...    52   5e-06
UniRef50_B6AS87 Putative uncharacterized protein n=1 Tax=Leptosp...    52   6e-06
UniRef50_C8U7L5 Predicted transcriptional regulator n=3 Tax=Ente...    51   1e-05
UniRef50_UPI0001873AE2 hypothetical protein PSPTOT1_4062 n=1 Tax...    50   2e-05
UniRef50_C4U3C1 Putative uncharacterized protein n=1 Tax=Yersini...    50   3e-05
UniRef50_B1WN54 Transcriptional regulator, Cro/CI family-related...    50   3e-05
UniRef50_P75975 Uncharacterized protein ymfT n=13 Tax=root RepID...    49   4e-05
UniRef50_C0AW02 Putative uncharacterized protein n=1 Tax=Proteus...    49   5e-05
UniRef50_A3ETJ5 Putative uncharacterized protein n=1 Tax=Leptosp...    49   6e-05
UniRef50_Q2W5Y9 Putative uncharacterized protein n=1 Tax=Magneto...    48   7e-05
UniRef50_C6XEC2 Putative phage repressor n=1 Tax=Methylovorus sp...    48   7e-05
UniRef50_Q7ME19 Putative uncharacterized protein VVA0865 n=1 Tax...    48   7e-05
UniRef50_C4SVT1 Putative uncharacterized protein n=2 Tax=Enterob...    48   1e-04
UniRef50_D0ZTD1 Putative uncharacterized protein n=1 Tax=Salmone...    47   2e-04
UniRef50_B0U2N7 Putative uncharacterized protein n=1 Tax=Xylella...    47   2e-04
UniRef50_B2I5H4 Putative uncharacterized protein n=1 Tax=Xylella...    47   3e-04
UniRef50_B7QPX1 Putative uncharacterized protein n=1 Tax=Ruegeri...    47   3e-04
UniRef50_A1W3Z6 Putative uncharacterized protein n=2 Tax=Acidovo...    46   3e-04
UniRef50_B8INW8 Transcriptional regulator, XRE family n=1 Tax=Me...    46   4e-04
UniRef50_B0N104 Putative uncharacterized protein n=2 Tax=Bacteri...    46   4e-04
UniRef50_D2U1N3 Phage transcriptional regulator n=1 Tax=Arsenoph...    46   4e-04
UniRef50_D0FSA9 Lambda repressor-like protein n=2 Tax=Erwinia py...    46   4e-04
UniRef50_D2UAK5 Hypothetical phage-related protein n=2 Tax=Xanth...    45   5e-04
UniRef50_A5CUZ3 Putative plasmid maintenance system, antidote pr...    45   6e-04
UniRef50_D2TVN9 Conserved hypothetical phage protein n=3 Tax=Ars...    45   7e-04
UniRef50_B3G2I3 Putative uncharacterized protein n=1 Tax=Pseudom...    45   7e-04
UniRef50_Q8W6G8 Putative uncharacterized protein orf59 n=1 Tax=S...    45   9e-04
UniRef50_D2C499 Transcriptional regulator, XRE family n=7 Tax=Th...    45   9e-04
UniRef50_D0TRF9 HigA family addiction module antidote protein n=...    45   0.001
UniRef50_B1VF05 Putative transcriptional regulator (HTH_3 family...    45   0.001
UniRef50_C7RCB9 Transcriptional regulator, XRE family n=1 Tax=Ka...    45   0.001
UniRef50_B9JNX2 Adenylate/guanylate cyclase protein n=3 Tax=Rhiz...    44   0.001
UniRef50_Q79RI9 HTH-type transcriptional regulator for conjugati...    44   0.001
UniRef50_Q1LA95 Transcriptional regulator, XRE family n=1 Tax=Cu...    44   0.002
UniRef50_B1M2M6 Transcriptional regulator, XRE family n=1 Tax=Me...    44   0.002
UniRef50_C5CH39 Transcriptional regulator, XRE family n=1 Tax=Ko...    44   0.002
UniRef50_B7J7H3 Transcriptional regulator, putative n=1 Tax=Acid...    44   0.002
UniRef50_Q728H0 Transcriptional regulator, putative n=4 Tax=Desu...    43   0.002
UniRef50_B9P4Q9 Predicted protein n=1 Tax=Populus trichocarpa Re...    43   0.002
UniRef50_C0EID5 Putative uncharacterized protein n=2 Tax=Clostri...    43   0.003
UniRef50_C6SQ36 Plasmid maintenance system antidote protein n=1 ...    43   0.003
UniRef50_B2HWL5 Putative uncharacterized protein n=1 Tax=Acineto...    43   0.003
UniRef50_D2U1D7 Conserved hypothetical phage protein n=1 Tax=Ars...    43   0.003
UniRef50_A8V1Y7 Putative uncharacterized protein (Fragment) n=1 ...    43   0.004
UniRef50_C7QJ41 Transcriptional regulator, XRE family n=1 Tax=Ca...    43   0.004
UniRef50_C8Q8I4 Putative phage repressor n=1 Tax=Pantoea sp. At-...    43   0.004
UniRef50_B8IIS9 Putative plasmid maintenance system antidote pro...    43   0.004
UniRef50_B4ESL6 Putative phage regulatory protein n=2 Tax=Entero...    43   0.004
UniRef50_D2MG99 Helix-turn-helix domain protein n=1 Tax=Rhodopse...    43   0.004
UniRef50_Q03UG5 Transcriptional regulator, xre family n=2 Tax=Le...    43   0.004
UniRef50_B7S386 Putative uncharacterized protein n=1 Tax=marine ...    42   0.005
UniRef50_Q48LS2 Repressor protein c2, putative n=8 Tax=Gammaprot...    42   0.005
UniRef50_B0G1D1 Putative uncharacterized protein n=1 Tax=Dorea f...    42   0.006
UniRef50_C9ZE23 Putative LysR-family transcriptional regulator n...    42   0.006
UniRef50_A8U7M3 Dynamin n=1 Tax=Carnobacterium sp. AT7 RepID=A8U...    42   0.006
UniRef50_Q60C36 DNA-binding protein n=3 Tax=Bacteria RepID=Q60C3...    42   0.006
UniRef50_C0FVH9 Putative uncharacterized protein n=1 Tax=Rosebur...    42   0.006
UniRef50_Q7D1G4 Putative uncharacterized protein n=1 Tax=Agrobac...    42   0.006
UniRef50_A4W7L5 Regulator protein, putative n=1 Tax=Enterobacter...    42   0.006
UniRef50_B0V853 Putative uncharacterized protein n=1 Tax=Acineto...    42   0.006
UniRef50_Q8F1A5 Predicted transcriptional regulator n=2 Tax=Lept...    42   0.007
UniRef50_D2RAC0 DNA-binding protein n=2 Tax=Actinobacteria (clas...    42   0.007
UniRef50_C8TM97 Predicted phage repressor protein n=15 Tax=Esche...    42   0.007
UniRef50_A6STU3 Prophage Pfl 6 Cro repressor n=2 Tax=Pseudomonas...    42   0.007
UniRef50_Q141U8 Putative uncharacterized protein n=2 Tax=Proteob...    42   0.007
UniRef50_Q2G3X4 Putative uncharacterized protein n=1 Tax=Novosph...    42   0.007
UniRef50_Q2P3H3 18.2K protein n=1 Tax=Xanthomonas oryzae pv. ory...    42   0.007
UniRef50_A8VQI9 Putative transcriptional regulator, XRE family n...    42   0.007
UniRef50_B7ML20 Putative uncharacterized protein n=13 Tax=Escher...    42   0.007
UniRef50_C6LAS4 Transcriptional regulator n=1 Tax=Bryantella for...    42   0.008
UniRef50_C7CEU7 Putative plasmid maintenance system antidote pro...    42   0.009
UniRef50_Q5WH75 Transcriptional regulator n=2 Tax=Bacillus RepID...    41   0.010
UniRef50_D1SQQ5 Transcriptional regulator, LysR family n=1 Tax=A...    41   0.011
UniRef50_B4DA78 Putative phage repressor n=1 Tax=Chthoniobacter ...    41   0.013
UniRef50_C1YIC5 Helix-turn-helix protein n=1 Tax=Nocardiopsis da...    41   0.013
UniRef50_C9L320 Toxin-antitoxin system, antitoxin component, Xre...    41   0.013
UniRef50_Q4K5P6 Proteic killer suppressor protein n=9 Tax=Proteo...    41   0.013
UniRef50_C9Z9U9 Putative DNA-binding protein n=1 Tax=Streptomyce...    41   0.014
UniRef50_Q136G0 Transcriptional regulators n=3 Tax=Rhodopseudomo...    41   0.015
UniRef50_A8ZP63 Putative uncharacterized protein n=1 Tax=Acaryoc...    41   0.015
UniRef50_B4VL76 Helix-turn-helix domain protein n=8 Tax=Cyanobac...    41   0.015
UniRef50_Q5FN49 Putative uncharacterized protein n=1 Tax=Glucono...    41   0.015
UniRef50_Q1CP28 Transcriptional regulator, Cro/CI family n=8 Tax...    41   0.015
UniRef50_C7N3C8 Helix-turn-helix protein n=2 Tax=Slackia heliotr...    40   0.017
UniRef50_D0FW95 Putative prophage regulatory ptotein n=2 Tax=Erw...    40   0.017
UniRef50_A5CEV6 Putative transcriptional regulator n=2 Tax=Orien...    40   0.017
UniRef50_D1Q0N7 Helix-turn-helix domain protein n=4 Tax=Prevotel...    40   0.018
UniRef50_D1DBX2 Transcriptional regulator n=3 Tax=Neisseria gono...    40   0.018
UniRef50_B2HL42 Plasmid maintenance system antidote protein n=1 ...    40   0.018
UniRef50_A4JWA5 Putative uncharacterized protein n=1 Tax=Burkhol...    40   0.019
UniRef50_P06965 Repressor protein of division inhibition gene di...    40   0.019
UniRef50_A8T0N7 Putative uncharacterized protein n=1 Tax=Vibrio ...    40   0.019
UniRef50_Q03N54 Transcriptional regulator, xre family n=15 Tax=L...    40   0.020
UniRef50_C7MVX6 Helix-turn-helix protein n=1 Tax=Saccharomonospo...    40   0.023
UniRef50_A8ZLR5 Plasmid maintenance system antidote system, puta...    40   0.025
UniRef50_A7MHM9 Putative uncharacterized protein n=3 Tax=Enterob...    40   0.025
UniRef50_C8T869 Putative uncharacterized protein n=1 Tax=Klebsie...    40   0.026
UniRef50_Q5FNI8 Putative phage protein n=1 Tax=Gluconobacter oxy...    40   0.026
UniRef50_B4RFH0 Transcriptional regulator, XRE family n=1 Tax=Ph...    40   0.028
UniRef50_B9BHR2 Conserved domain protein n=2 Tax=Burkholderia mu...    40   0.031
UniRef50_UPI0001B4BA50 hypothetical protein ShygA5_38643 n=1 Tax...    40   0.032
UniRef50_C5B1U8 Putative uncharacterized protein n=5 Tax=Alphapr...    39   0.036
UniRef50_C9LCK9 Toxin-antitoxin system, antitoxin component, Xre...    39   0.037
UniRef50_D0KXR0 Plasmid maintenance system antidote protein, XRE...    39   0.039
UniRef50_C6P0T2 Plasmid maintenance system antidote protein, XRE...    39   0.041
UniRef50_B3EPS4 Plasmid maintenance system antidote protein, XRE...    39   0.049
UniRef50_A6NW39 Putative uncharacterized protein n=1 Tax=Bactero...    39   0.050
UniRef50_C5CJM0 Transcriptional regulator, XRE family n=1 Tax=Va...    39   0.058
UniRef50_D2MJ41 Plasmid maintenance system antidote protein, XRE...    39   0.059
UniRef50_Q9PG03 Putative uncharacterized protein n=1 Tax=Xylella...    38   0.085
UniRef50_A1KC49 Putative uncharacterized protein n=1 Tax=Azoarcu...    38   0.091

>UniRef50_P76063 Uncharacterized protein ydaS n=8 Tax=root RepID=YDAS_ECOLI
          Length = 98

 Score =  148 bits (374), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC
Sbjct: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60

Query: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
          EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT
Sbjct: 61 EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98


>UniRef50_C8U5T9 Putative antirepressor n=3 Tax=Escherichia coli RepID=C8U5T9_ECO10
          Length = 114

 Score =  141 bits (356), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/98 (84%), Positives = 90/98 (91%), Gaps = 4/98 (4%)

Query: 1   MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
           MKK+NYSFK+ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERAT+G VLC
Sbjct: 8   MKKDNYSFKRACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATKGGVLC 67

Query: 61  EELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT 98
           EELRPD+DW+YLRRS+C SQNMS+KQ ND N    DHT
Sbjct: 68  EELRPDVDWTYLRRSSCYSQNMSMKQPNDEN----DHT 101


>UniRef50_B4EVH8 Phage protein n=3 Tax=Proteobacteria RepID=B4EVH8_PROMH
          Length = 79

 Score =  107 bits (268), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 45/69 (65%), Positives = 55/69 (79%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + K+AC  VGGQS MA+ LG+SPP+VNQWI G R++PA RCP IE+ T G V CEELRPD
Sbjct: 9  AIKKACNYVGGQSEMAKRLGISPPTVNQWINGTRKIPARRCPEIEKVTSGVVRCEELRPD 68

Query: 67 IDWSYLRRS 75
          +DWSYLR +
Sbjct: 69 VDWSYLRGT 77


>UniRef50_C9MCU9 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae
          NT127 RepID=C9MCU9_HAEIN
          Length = 81

 Score =  100 bits (249), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   +    +A  + G QSA+AR  GVS P+VN W+ G  ++  +  P+I +AT+ EV  
Sbjct: 1  MSSMSEYVNKAIEICGSQSALARACGVSQPTVNLWLNG-GKMDVKYIPSIIQATKFEVNP 59

Query: 61 EELRPDIDWSYLRRSA 76
           ELRPD+DW  +  S 
Sbjct: 60 TELRPDVDWPTIYESL 75


>UniRef50_Q3R7Y7 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R7Y7_XYLFA
          Length = 101

 Score =  100 bits (248), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/73 (52%), Positives = 45/73 (61%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
             G  S +AR+L VS  +V  WI G + +P ERCPAIERAT   V CEELRPD+DW YL
Sbjct: 9  QERGRASQLARMLSVSSTTVANWISGKKPIPPERCPAIERATVRAVTCEELRPDVDWEYL 68

Query: 73 RRSACCSQNMSVK 85
          R +A   Q  S  
Sbjct: 69 RGTAAIDQAKSKS 81


>UniRef50_C1HWP2 Putative uncharacterized protein n=9 Tax=Neisseria gonorrhoeae
          RepID=C1HWP2_NEIGO
          Length = 78

 Score = 98.9 bits (245), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          S ++A    G +S +AR +GV  P+V  W K     P  RC  IE+ T G V  ++LRPD
Sbjct: 4  SIQKAVDYFGNESRLARAIGVKQPTVWAWNKKGTPPPIIRCVQIEKLTGGAVNRKDLRPD 63

Query: 67 IDWSYLRRSACCSQNM 82
           DW  +       Q  
Sbjct: 64 -DWHLIWPELAGDQPK 78


>UniRef50_A3M3T1 Putative Cro protein n=8 Tax=root RepID=A3M3T1_ACIBT
          Length = 82

 Score = 97.4 bits (241), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   + +F  A    G  SA+AR +GV+P + ++W     ++P +RC  IE  T+G+V  
Sbjct: 1  MTTPHEAFNNAVTFAGSISALARKIGVTPWAASKW--NPEKIPEDRCLKIEEITQGQVKA 58

Query: 61 EELRPDIDWSYLRRSACCSQNMSVK 85
          E+LRPDI+W Y+R++    QN SV 
Sbjct: 59 EQLRPDINWEYVRKN-LKKQNQSVS 82


>UniRef50_A4JD18 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JD18_BURVG
          Length = 97

 Score = 96.2 bits (238), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 43/72 (59%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N S  +A    G  SAMAR LG+S  +V Q  K   ++PAE CP IER   G V CE+L 
Sbjct: 22 NDSIDRAVKHFGSMSAMARHLGLSSYTVIQQWKIAGRVPAEHCPNIERLCGGVVRCEDLN 81

Query: 65 PDIDWSYLRRSA 76
            +DW+++R SA
Sbjct: 82 DRVDWAFVRASA 93


>UniRef50_A1TPM4 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TPM4_ACIAC
          Length = 86

 Score = 93.5 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/69 (44%), Positives = 43/69 (62%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          + ++A    GG + +A  L  +  +V  W  G RQLPAE CP +ER   G V CE+LRPD
Sbjct: 3  AIQRAIQGAGGPAKVAHELRCTVQAVCFWRDGKRQLPAEHCPVLERLNDGAVRCEDLRPD 62

Query: 67 IDWSYLRRS 75
          +DW+Y+R S
Sbjct: 63 VDWAYIRSS 71


>UniRef50_C4F662 Uncharacterized prophage-related protein n=5 Tax=Haemophilus
          influenzae RepID=C4F662_HAEIN
          Length = 78

 Score = 93.5 bits (231), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             ++A  + G Q ++A+  GVS  +VN+W+ G   +  +  P+I +AT+ EV   ELRP
Sbjct: 2  SGIERAVEICGKQKSLAKACGVSQQAVNKWVSGKNNMDVKYIPSIIQATKFEVNPTELRP 61

Query: 66 DIDWSYLRRSA 76
          D+DW  +  S 
Sbjct: 62 DVDWPTIYESL 72


>UniRef50_C4K7L6 Phage transcriptional regulatory protein n=1 Tax=Candidatus
          Hamiltonella defensa 5AT (Acyrthosiphon pisum)
          RepID=C4K7L6_HAMD5
          Length = 152

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K+A  +V GQ  +A L GV  P+V +W+ G   +      +I  ++ GE+   EL 
Sbjct: 2  NKAIKKAIKIVRGQKKLADLCGVKQPTVWRWLHGGG-ITFRYLKSIVESSGGEIKPHELN 60

Query: 65 PDIDWSYLRRSACCSQNMSVKQLND 89
           D +  YL  +   SQ  +     D
Sbjct: 61 KDFE-KYLFINMIFSQCRAKSNPKD 84


>UniRef50_C5T1S9 Putative uncharacterized protein n=1 Tax=Acidovorax delafieldii
          2AN RepID=C5T1S9_ACIDE
          Length = 81

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
            +  QAC  +G Q+ +A+ + V+P  V+QW  GVR +P + C AIERAT G V   +LR
Sbjct: 4  QQAIHQACEQLGSQAGLAKAIDVAPAIVHQWRSGVRPVPVQHCLAIERATNGAVSRRDLR 63

Query: 65 PDIDWSYLRRSACC 78
          PD DW  +      
Sbjct: 64 PD-DWHLIWPELAN 76


>UniRef50_A4NID4 Predicted DNA-binding transcriptional regulator n=2
          Tax=Pasteurellaceae RepID=A4NID4_HAEIN
          Length = 75

 Score = 91.6 bits (226), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 3/75 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK  +Y  K      G  + +A+ +G    +V  W KG +++P  RCP IER T G+V C
Sbjct: 1  MKLRDYFEK---QGRGSLTYLAKQMGAKTSNVCLWAKGKKKVPTNRCPDIERITEGKVTC 57

Query: 61 EELRPDIDWSYLRRS 75
          EELRPD++W  LR S
Sbjct: 58 EELRPDVNWGVLRNS 72


>UniRef50_B0UTL6 Uncharacterized prophage-related protein n=1 Tax=Haemophilus
          somnus 2336 RepID=B0UTL6_HAES2
          Length = 81

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 47/70 (67%), Gaps = 1/70 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          + + K+   +VG Q+ +A+L  VS PS++ W+KG  ++  +  P++ +AT GEV  E+LR
Sbjct: 2  DKNIKKTINLVGTQTKLAKLCSVSQPSISIWLKG-GKMDVKYIPSLIKATNGEVTPEDLR 60

Query: 65 PDIDWSYLRR 74
          PD+DW  +R+
Sbjct: 61 PDVDWEVIRQ 70


>UniRef50_A1VPJ4 Putative uncharacterized protein n=2 Tax=Burkholderiales
          RepID=A1VPJ4_POLNA
          Length = 187

 Score = 88.5 bits (218), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
          Q A A   G +   + +     +++ AE C  IER +   V+CE LRPDIDW+ +R +A 
Sbjct: 16 QKAFALRCGTTVGYLRKAGSTGQRIGAELCINIERESLKSVVCEVLRPDIDWASIRHTAP 75

Query: 78 CSQNM-SVKQLNDSNKSSFDHT 98
           SQ   ++  + +  K++  H 
Sbjct: 76 ASQAQEAINTVAEEAKAAILHV 97


>UniRef50_B2Q6B7 Putative uncharacterized protein n=1 Tax=Providencia stuartii
          ATCC 25827 RepID=B2Q6B7_PROST
          Length = 75

 Score = 86.6 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 35/64 (54%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K A  +VG Q  +    G++  +V +W+    ++  E  P I +AT G+V  +++R
Sbjct: 2  NEAIKTAIEIVGTQKKLGEACGITQQAVFKWLHNKAKVSPEHIPLIVKATNGQVKGKDIR 61

Query: 65 PDID 68
          PD+ 
Sbjct: 62 PDLP 65


>UniRef50_B4EWP1 Phage regulatory protein n=15 Tax=Gammaproteobacteria
          RepID=B4EWP1_PROMH
          Length = 83

 Score = 86.6 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 2  KKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCE 61
                 ++A  +VGGQSA+AR +     +V  W+    ++PAE    IE+AT+G+V   
Sbjct: 5  NTTQKHLRRAIDLVGGQSALARAINSKQQNVWFWLNKSGRVPAEFVLPIEQATQGQVTRS 64

Query: 62 ELRPDI 67
          +LRPDI
Sbjct: 65 QLRPDI 70


>UniRef50_A1TN00 Putative uncharacterized protein n=1 Tax=Acidovorax citrulli
          AAC00-1 RepID=A1TN00_ACIAC
          Length = 80

 Score = 86.2 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           + A + +GG   +A  +GV   +V+ W        A  C AIERAT G V   +LRPD 
Sbjct: 4  LEAAISAIGGVGKLAEAIGVGQSAVSNWRARGTTPDAAYCVAIERATSGAVSRRDLRPD- 62

Query: 68 DWSYLRRSACCS 79
          DW  +      S
Sbjct: 63 DWHLIWPELTAS 74


>UniRef50_D2U108 Conserved hypothetical phage protein n=1 Tax=Arsenophonus
          nasoniae RepID=D2U108_9ENTR
          Length = 72

 Score = 85.4 bits (210), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           +NY  + A  + G Q A+A+  G++  ++  W+ G + +  +  P +   T G V    
Sbjct: 1  MKNYGIEAAIKIAGSQKALAKKCGLAQSTICDWLNGKKPVSPKSVPDLVEVTGGTVPAYR 60

Query: 63 LRPDID 68
           RPD+ 
Sbjct: 61 FRPDLP 66


>UniRef50_UPI0001AF7BFA hypothetical protein NgonF_03557 n=1 Tax=Neisseria gonorrhoeae
          FA19 RepID=UPI0001AF7BFA
          Length = 76

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           +  CA+ G QS +AR  G+SP  ++Q  KG++ +P +    IE++T G V  +E+ PD 
Sbjct: 3  LRDYCAIRGNQSDLARKTGISPSFIHQIAKGLKPVPIQSAALIEKSTNGRVTRKEMFPDT 62

Query: 68 DWSYLRRSACCSQNM 82
           W  +       Q  
Sbjct: 63 -WHLIWPELADDQPK 76


>UniRef50_Q7N1J7 Similarities with unknown protein and with YdaS of Escherichia
          coli n=3 Tax=Enterobacteriaceae RepID=Q7N1J7_PHOLL
          Length = 94

 Score = 84.7 bits (208), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK  +Y         G    +A  LGVS   ++Q   G   +P  RC  IE AT G+V  
Sbjct: 20 MKLNDYISNL---KRGEAKLLAEKLGVSSSYLSQMAHGYAPVPPARCFDIENATNGKVTR 76

Query: 61 EELRPDIDWSYLRRS 75
          ++LRP  DW  +   
Sbjct: 77 QDLRPH-DWQKIWPE 90


>UniRef50_A5W5W3 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1
          RepID=A5W5W3_PSEP1
          Length = 82

 Score = 83.5 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K   + K+A  V+G Q+ +AR L V+ P+VNQW  G R +PA+R   IE  T G V   +
Sbjct: 2  KSAEAAKEASRVLGSQAELARRLNVAAPTVNQWCSGERTVPAKRALQIEALTNGAVNRAD 61

Query: 63 LRPDIDWSYLRRS 75
          L P   W+ +  +
Sbjct: 62 LCPSFPWNQIDSN 74


>UniRef50_B7LNE3 Represror Cro n=6 Tax=Escherichia RepID=B7LNE3_ESCF3
          Length = 77

 Score = 83.5 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   N + + A ++ G Q  +A L GV+ P+V +W+ G   + A     I  AT G++  
Sbjct: 1  MIMTNQTIQLAISITGSQKRLADLCGVAQPTVWRWLHGGG-IDARYVMKIVSATGGKIKP 59

Query: 61 EELRPDI 67
           ++RPD+
Sbjct: 60 ADIRPDL 66


>UniRef50_C6HVZ4 Putative uncharacterized protein n=1 Tax=Leptospirillum
          ferrodiazotrophum RepID=C6HVZ4_9BACT
          Length = 85

 Score = 83.1 bits (204), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K     ++A  +VG Q+ +A++LG     +  W+K    + AE    +E+AT G V   E
Sbjct: 2  KPTSPLRKAIEIVGSQNKLAKILGKRQSVIWAWLKR-GTVSAEYVLKVEQATGGRVTRHE 60

Query: 63 LRPDI 67
          LRPD+
Sbjct: 61 LRPDL 65


>UniRef50_B7LB93 Cro n=22 Tax=root RepID=B7LB93_ECO55
          Length = 76

 Score = 82.3 bits (202), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          N + K A  +VG Q  +     VS  +V +W+    ++  E   +I  AT G V   ++R
Sbjct: 2  NPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIR 61

Query: 65 PDID 68
          PD+ 
Sbjct: 62 PDLP 65


>UniRef50_Q1QIT7 Cytoplasmic chaperone TorD n=10 Tax=Alphaproteobacteria
          RepID=Q1QIT7_NITHX
          Length = 260

 Score = 82.3 bits (202), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
            +    +A  V GGQ+ +AR +G+S PSV+ W     ++PAER  A+E  T   +   E
Sbjct: 1  MRDSGLDRAIQVAGGQAELARRIGISQPSVSNW----NRVPAERVIAVEAVTG--ISRLE 54

Query: 63 LRPDI 67
          LRPD+
Sbjct: 55 LRPDL 59


>UniRef50_Q3R0L1 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          subsp. sandyi Ann-1 RepID=Q3R0L1_XYLFA
          Length = 79

 Score = 80.4 bits (197), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +   A   +G  SA+A  LGV   +++ W +   ++PAERC  IER T G V+C ELRPD
Sbjct: 3  AIDIAINKLGSVSALAASLGVRQSAISNW-RARGRVPAERCIDIERVTNGAVICRELRPD 61

Query: 67 I 67
          +
Sbjct: 62 V 62


>UniRef50_B4YK26 Putative uncharacterized protein n=1 Tax=Tetrathiobacter
          kashmirensis RepID=B4YK26_9BURK
          Length = 79

 Score = 79.6 bits (195), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 1  MKKEN----YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG 56
          MKK+N     S   A   VG Q+ +A LL VS  ++ QW     ++P E CP IE+ T  
Sbjct: 1  MKKKNPRIEESLNAAAKAVGNQARLAELLDVSSSAIWQW--KQSEVPPEHCPEIEKLTG- 57

Query: 57 EVLCEELRPDIDWSYLRRSACCS 79
           + CE L   +DWSYLR +    
Sbjct: 58 -IRCENLNSTVDWSYLRGTEPNK 79


>UniRef50_C4GHG9 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC
          51147 RepID=C4GHG9_9NEIS
          Length = 66

 Score = 79.6 bits (195), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
            +   A  V+G Q+++A+ LGV P +VN W +G  ++PAE    IE+ T   V  ++LR
Sbjct: 2  QDAILLAANVIGSQASLAKELGVHPTTVNSWARGRNKIPAETAIKIEKLTNSVVTRQDLR 61

Query: 65 PDI 67
          PD+
Sbjct: 62 PDL 64


>UniRef50_C5A7V7 Putative uncharacterized protein n=1 Tax=Burkholderia glumae BGR1
          RepID=C5A7V7_BURGB
          Length = 93

 Score = 78.5 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          +     K A    GG SA+A  LG+S  ++  +I+     P E CP IE+ ++G+V CE 
Sbjct: 9  ERQAELKDAVKQAGGASALAEHLGLSRGAIYDFIRRGNFNP-EHCPEIEKFSQGKVRCEV 67

Query: 63 LRPDIDWSYLR 73
          L   +DW+++R
Sbjct: 68 LNNRVDWAFIR 78


>UniRef50_A4C8R3 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas
          tunicata D2 RepID=A4C8R3_9GAMM
          Length = 70

 Score = 78.5 bits (192), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M ++N   K+A ++  GQ A+A+ +GV+   ++ WI     +PAE    IE  T   V  
Sbjct: 1  MTEQNP-LKKAISIAQGQKALAKKIGVTQQCISLWITKNAAVPAEHAIKIETETG--VSR 57

Query: 61 EELRPDI 67
           ELRPD+
Sbjct: 58 AELRPDL 64


>UniRef50_B0KSE2 Putative uncharacterized protein n=1 Tax=Pseudomonas putida GB-1
          RepID=B0KSE2_PSEPG
          Length = 74

 Score = 78.5 bits (192), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
          G +A AR  G S   + Q   G R+  A    +++R T G + CEE+RPDIDW+YLR + 
Sbjct: 14 GLAAFARHCGTSAGQLKQVAYGNRRASAGLAVSLDRETGGVIRCEEMRPDIDWAYLRNAR 73


>UniRef50_C5BBP1 Conserved domain protein n=2 Tax=Edwardsiella RepID=C5BBP1_EDWI9
          Length = 71

 Score = 77.3 bits (189), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
            N   K+A A+ GGQ  +AR  GV  PSV++W++G ++  A     IE AT G++L   
Sbjct: 1  MTNSLIKEAIALAGGQQELARSCGVRQPSVSEWLRGKKKPSAISAKRIELATGGKILAIN 60

Query: 63 LRPDI 67
          +RPD+
Sbjct: 61 IRPDL 65


>UniRef50_Q0AG04 Putative uncharacterized protein n=2 Tax=Proteobacteria
          RepID=Q0AG04_NITEC
          Length = 83

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M+   Y  K + +     +  A     S   +     G R+     C  IER + G V C
Sbjct: 1  MELIEYIKKLSISDR---NDFAVCCETSFAHLRNIAYGYRRAGELLCINIERESGGLVKC 57

Query: 61 EELRPDIDWSYLRRSACCSQNMS 83
          E LRPD+DW YLR S   ++ + 
Sbjct: 58 ETLRPDVDWGYLRNSRPQTKPIQ 80


>UniRef50_C8UNK0 Predicted antirepressor protein Cro n=4 Tax=Escherichia coli
          RepID=C8UNK0_ECO1A
          Length = 100

 Score = 76.2 bits (186), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRR 74
          VG     A  LGVS   ++Q   G   +   R   IE AT G+V   ELRP  DW  +  
Sbjct: 12 VGDAKKFAARLGVSSSYLSQMASGRTAISPTRALMIESATEGQVSRAELRPH-DWELIWP 70

Query: 75 S 75
           
Sbjct: 71 E 71


>UniRef50_D2U112 Phage regulatory protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2U112_9ENTR
          Length = 78

 Score = 75.0 bits (183), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKG-VRQLPAERCPAIERATRGEVLCEELR 64
           + K+   V G  + +A  LGVS  +V+QW      ++P +R  AI   T   +   ELR
Sbjct: 2  SALKKVINVTGTATRLAAALGVSNMTVSQWKNKYKGRVPVDRVLAIYELTG--ITPHELR 59

Query: 65 PDI 67
          PDI
Sbjct: 60 PDI 62


>UniRef50_B8IT79 Putative uncharacterized protein n=1 Tax=Methylobacterium
          nodulans ORS 2060 RepID=B8IT79_METNO
          Length = 83

 Score = 75.0 bits (183), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
           +     A  +VG Q  +AR  G+S   V++ +   RQ+ A    AIE+AT G++   +L
Sbjct: 3  RHPHIALAIDIVGSQPKLARAAGISQQQVSKLLHCQRQISAGVAIAIEKATAGKIGRWQL 62

Query: 64 RPDIDW 69
          RPD  W
Sbjct: 63 RPDY-W 67


>UniRef50_B7JAE0 Prophage Afe02, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7JAE0_ACIF2
          Length = 74

 Score = 75.0 bits (183), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 32/51 (62%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           Q+ +AR LGV+P  V+QWI G   + AER   IE +T G V   ELRPDI
Sbjct: 11 SQTLLARKLGVTPGLVSQWITGRTVITAERAAQIELSTNGAVTRAELRPDI 61


>UniRef50_B4SNJ4 CI repressor n=1 Tax=Stenotrophomonas maltophilia R551-3
          RepID=B4SNJ4_STRM5
          Length = 143

 Score = 75.0 bits (183), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           +  +A    GG +++A  LGV   +V+ W     ++P      IE  T   V   +L P
Sbjct: 2  DALDRAVKAAGGVTSLATHLGVRQSAVSNWRSR-GRVPPAMAIPIESVTG--VSRHDLCP 58

Query: 66 DI 67
          DI
Sbjct: 59 DI 60


>UniRef50_A7MHP9 Putative uncharacterized protein n=1 Tax=Cronobacter sakazakii
          ATCC BAA-894 RepID=A7MHP9_ENTS8
          Length = 73

 Score = 74.6 bits (182), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERAT 54
          M  E  +  +A  + GGQS +AR +       V    V  W+   ++ P +   +IE+ T
Sbjct: 1  MTPEQSALTEAIEIAGGQSELARKISLEAGGLVKQQQVWNWLHREKKAPIKHTVSIEKLT 60

Query: 55 RGEVLCEELRPDI 67
             V  E+LRPD+
Sbjct: 61 G--VPKEKLRPDV 71


>UniRef50_A9N3H0 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=A9N3H0_SALPB
          Length = 85

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKG-VRQLPAERCPAIERATRGEVLCEELRPD 66
           ++A    G  S +A LLG+ P SV++W       +P  R   I + T   +   ELRPD
Sbjct: 11 LEKAIKKAGNASNLAALLGIKPMSVSRWKTRYNGAVPPGRVLPIFKITG--ITPHELRPD 68

Query: 67 I 67
          I
Sbjct: 69 I 69


>UniRef50_Q6JIG9 Gp62 n=1 Tax=Burkholderia phage phi1026b RepID=Q6JIG9_9CAUD
          Length = 104

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRG-EVLCEELR 64
           +   A ++   Q+  AR +GVSP + + WIK  R+ P E CP +ERA     V+CE LR
Sbjct: 17 ETLCLAVSLCDSQADFARRVGVSPQAASNWIKRDRRAPIEACPFVERAVDDPRVVCETLR 76

Query: 65 PDID-WSYLRRSAC 77
          PD   W  LR+   
Sbjct: 77 PDYQGWVVLRQLML 90


>UniRef50_D1TFB3 Putative uncharacterized protein n=1 Tax=Burkholderia sp.
          CCGE1002 RepID=D1TFB3_9BURK
          Length = 97

 Score = 73.9 bits (180), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYL 72
          +  G    +A  +GVS   ++Q   G+  +  ERC  IE+AT G V   +L+P  +W  L
Sbjct: 10 SERGTAKKLASSIGVSQSFLSQMASGLSPISQERCFLIEQATAGAVARWDLKPH-NWHKL 68

Query: 73 RRSACCS 79
                +
Sbjct: 69 WPELVGA 75


>UniRef50_C6AM32 Antirepressor Cro n=5 Tax=root RepID=C6AM32_AGGAN
          Length = 70

 Score = 73.5 bits (179), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 37/61 (60%), Gaps = 1/61 (1%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           +N + ++A ++ G Q  +++  GVS  SV+ W+ G   + A+  P I +AT+G+V  ++
Sbjct: 1  MKNEAIEKAISICGSQVKLSQECGVSQVSVSFWLNGGG-INAKYIPRIVKATKGKVTEKQ 59

Query: 63 L 63
          +
Sbjct: 60 I 60


>UniRef50_A8PM33 Putative uncharacterized protein n=1 Tax=Rickettsiella grylli
          RepID=A8PM33_9COXI
          Length = 296

 Score = 72.7 bits (177), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           +     +A   +G    MA+ LG+    +  WIKG  ++P E    IE  T GE+  ++
Sbjct: 1  MQEAMLDKAIYSLGSVRHMAKKLGIHREHIYAWIKGFSKIPLEYALQIEYLTGGEINWKD 60

Query: 63 LRP 65
          L P
Sbjct: 61 LVP 63


>UniRef50_A9YWX8 Putative Cro n=1 Tax=Burkholderia phage Bups phi1
          RepID=A9YWX8_9CAUD
          Length = 103

 Score = 72.3 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 6/77 (7%)

Query: 1  MKKEN---YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE 57
          MK  N    + + A    G QSA+ARL+G   P +++W+     +  E C  +  A    
Sbjct: 1  MKPTNCSVPALQAAIQKAGSQSALARLIGKKQPHIHKWLHSPNAMRPENCVLVGNAVG-- 58

Query: 58 VLCEELRPDIDWSYLRR 74
          +   + RP  DW  +  
Sbjct: 59 IPYRDFRP-TDWHLIWP 74


>UniRef50_B7J7H4 Prophage Afe01, transcriptional regulator, Cro family n=1
          Tax=Acidithiobacillus ferrooxidans ATCC 23270
          RepID=B7J7H4_ACIF2
          Length = 69

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 4/56 (7%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
             +GG +A+ARL+G++  +V+QW    + +P ++   IERAT G +  +ELRPDI
Sbjct: 7  IKSLGGPTAVARLIGITKGAVSQW----KAIPVDKAILIERATHGSITRQELRPDI 58


>UniRef50_Q9PBL8 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          RepID=Q9PBL8_XYLFA
          Length = 81

 Score = 71.6 bits (174), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           ++    +A  V+G Q A+A LLG+ P  V+QW+   R++       IE AT   +   +
Sbjct: 2  SQSKPIARAVEVLGSQKALADLLGIHPALVSQWVTSRRRVAPRHVLTIESAT--SISRHD 59

Query: 63 LRPDI 67
          LRPDI
Sbjct: 60 LRPDI 64


>UniRef50_B5XSM1 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=B5XSM1_KLEP3
          Length = 71

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          +   A  V G  + +A  LGVS  +V+QW K    +P+ R   +  AT   V   ELRPD
Sbjct: 3  ALDNAIRVAGSANKLASTLGVSGMAVSQW-KTKGIVPSSRVLQVFNATG--VTPHELRPD 59

Query: 67 I 67
          +
Sbjct: 60 L 60


>UniRef50_Q37907 Regulatory protein cro n=3 Tax=root RepID=RCRO_BPD3
          Length = 73

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDID 68
          K+  A  G Q   A  LGV   +V+ W++G   +        +  T G+   E+L P   
Sbjct: 6  KELVAHFGTQDETAAKLGVDQSTVSGWVRGKHGMSPVVAKRAQVLTDGKFKKEDLCPAFP 65

Query: 69 WSYLRRSA 76
          W  L   A
Sbjct: 66 WEVLSAVA 73


>UniRef50_A4JMH8 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JMH8_BURVG
          Length = 94

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 21 MARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
           A   G +   +   I G R+   + C AIER + G V   +LRPD DW  +     
Sbjct: 32 FAARCGTTAAFLRNVIYGQRKAGEKLCVAIERESGGVVTRRDLRPD-DWHLIWPELA 87


>UniRef50_B7LJJ9 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii
          ATCC 35469 RepID=B7LJJ9_ESCF3
          Length = 82

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERAT 54
          M  E  +  +A A+ GGQS +AR L       V    V  W+   ++ PA+    IE+ T
Sbjct: 1  MTPEQLALSEAIALAGGQSELARKLTASSGHLVKQQHVWNWLNREKRPPAKLSIFIEKTT 60

Query: 55 RGEVLCEELRPDI 67
             +  E+LRPDI
Sbjct: 61 G--ISKEKLRPDI 71


>UniRef50_C0AX08 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC
          35198 RepID=C0AX08_9ENTR
          Length = 77

 Score = 70.8 bits (172), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
          M +ENY+ ++A   +G  SA++R+ G  SP SV  WIK   ++PAER   +       V 
Sbjct: 1  MHQENYT-EKAIRTIGVPSAVSRMFGFNSPQSVFNWIK-NNKVPAERVIQLCELGGWVVS 58

Query: 60 CEELRPDI 67
            +LRPD+
Sbjct: 59 PHQLRPDL 66


>UniRef50_Q2L2G5 Phage protein n=1 Tax=Bordetella avium 197N RepID=Q2L2G5_BORA1
          Length = 87

 Score = 70.4 bits (171), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M+   Y  ++     G Q A+A+ +GV  P V++W++G R +P E   AIE AT G V  
Sbjct: 1  MRLAEYLSQK----RGRQIALAKAIGVHAPDVSRWVRGKRPIPLEYGAAIEIATGGAVTR 56

Query: 61 EELRPDIDWSYLRRSACCSQNMSVKQ 86
          ++  PD D+  +      +  ++ +Q
Sbjct: 57 KDEWPD-DYRRIWPELAAAPTLAAQQ 81


>UniRef50_A7JSL2 Putative uncharacterized protein n=2 Tax=Pasteurellaceae
          RepID=A7JSL2_PASHA
          Length = 66

 Score = 70.0 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   +Y   +     G ++  A+ LG+S   + Q   G   +PA     IE  T GEV  
Sbjct: 1  MNLTSYLSDRP---RGFKADFAKKLGISKSYLRQVETGYSPMPAYLAKKIEEVTNGEVAK 57

Query: 61 EELRPDIDW 69
           ELRPD+ W
Sbjct: 58 SELRPDL-W 65


>UniRef50_D0ZSX1 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S
          RepID=D0ZSX1_SALT1
          Length = 86

 Score = 70.0 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGV-RQLPAERCPAIERATRGEVLCEELR 64
           +  +A    G  + +A LL VS  +++ W       +PA+R   I  AT   V   ELR
Sbjct: 8  KAIDKAITRAGTATRLAELLEVSAMTISHWRNRYQGVVPADRVLPIYSATG--VTPHELR 65

Query: 65 PDI 67
          PD+
Sbjct: 66 PDL 68


>UniRef50_Q93E25 LygE n=1 Tax=Salmonella enterica subsp. enterica serovar
          Enteritidis RepID=Q93E25_SALEN
          Length = 118

 Score = 70.0 bits (170), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  + Y  K        QS +A L G S   ++    G  QL  E+   I  AT  EV  
Sbjct: 1  MTLDEYLKKNRVR----QSCLATLAGCSQSMISLVTTGRSQLSPEKVLRIAEATNFEVTP 56

Query: 61 EELRPD 66
           ELRPD
Sbjct: 57 HELRPD 62


>UniRef50_UPI00016AD132 hypothetical protein Bpse38_34097 n=1 Tax=Burkholderia
          thailandensis MSMB43 RepID=UPI00016AD132
          Length = 84

 Score = 69.2 bits (168), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 1  MKKEN---YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE 57
          MK  N    +  +A    G QSA+ARL+G   P +++W+     +  E C  +  A    
Sbjct: 1  MKPTNCSAPALLRAIEKAGSQSALARLIGKKQPHIHKWLHSPNAMRPENCVLVGAAVG-- 58

Query: 58 VLCEELRPDIDWSYLRRS 75
          +   + RP  DW  +   
Sbjct: 59 IPYRDFRP-YDWKLIWPE 75


>UniRef50_C2DWU1 LygE protein n=2 Tax=Escherichia RepID=C2DWU1_ECOLX
          Length = 91

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M   +Y  ++       Q    +L G+S   V++ + G  +   E+   +   T  EV  
Sbjct: 1  MNLRDYLKEKHI----TQLQFGKLTGLSQVHVSRVLGGYERFSPEKALRVAEVTNFEVTP 56

Query: 61 EELRPDI 67
           ELRPDI
Sbjct: 57 HELRPDI 63


>UniRef50_Q4FUH4 Putative uncharacterized protein n=1 Tax=Psychrobacter arcticus
          273-4 RepID=Q4FUH4_PSYA2
          Length = 84

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
              +  +A    GGQ+ +A L+G    +V QW+    +  A     I   T   +   E
Sbjct: 7  TPKQALAKAVKKAGGQTELANLIGTKQQNVWQWLNRDGKASARYVSKISEKTN--IPSYE 64

Query: 63 LRPDI 67
          LRPDI
Sbjct: 65 LRPDI 69


>UniRef50_A5UGL7 Putative uncharacterized protein n=5 Tax=Pasteurellaceae
          RepID=A5UGL7_HAEIG
          Length = 68

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           +N +   A    G Q  +A   GV+  +V  W+KG   +  +  P I +A+ G+V   +
Sbjct: 1  MQNETINLAIQECGTQKKLANACGVTQGAVALWLKGGG-INGKYIPLIAKASNGKVTETD 59

Query: 63 L 63
          +
Sbjct: 60 I 60


>UniRef50_UPI0001B52E27 hypothetical protein ShiD9_12110 n=1 Tax=Shigella sp. D9
          RepID=UPI0001B52E27
          Length = 87

 Score = 67.3 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          M  +NY+ ++A    G   S +AR  G  S  SV  W+    Q+P+ER   +       V
Sbjct: 1  MSSQNYT-EKAVKAAGKSLSEVARRFGFKSTQSVANWV-INNQVPSERVLQLCELGNWSV 58

Query: 59 LCEELRPDI 67
             ELRPDI
Sbjct: 59 TPHELRPDI 67


>UniRef50_C8U3V4 Predicted antirepressor protein Cro n=19 Tax=Enterobacteriaceae
          RepID=C8U3V4_ECO10
          Length = 90

 Score = 67.3 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           S ++       Q+ + R +GV+  +V QW      +P ++   + +  + EV   E+RP
Sbjct: 3  DSTREKIRQKYTQAEIGRYMGVAQQTVWQWFSFG--VPPKQVIPLCQLMKWEVTPHEIRP 60

Query: 66 DI 67
          DI
Sbjct: 61 DI 62


>UniRef50_B7KSY7 Putative chaperone n=1 Tax=Methylobacterium chloromethanicum CM4
          RepID=B7KSY7_METC4
          Length = 77

 Score = 66.9 bits (162), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
            + +  +A    GG  A+   +G+S  +++QW     + P  R  A+E A+   V   E
Sbjct: 1  MSDVALSRAIKEAGGPKALGDAIGISSQAISQW----TECPPRRVLAVEAASG--VSRHE 54

Query: 63 LRPDI 67
          LRPD+
Sbjct: 55 LRPDL 59


>UniRef50_B8F4M6 Phage transcriptional regulatory protein/antirepressor Cro n=1
          Tax=Haemophilus parasuis SH0165 RepID=B8F4M6_HAEPS
          Length = 66

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N    +A +  G +  +A   GVS  +V+ W++G   + A+    I  AT G++  +E+
Sbjct: 2  NKVIDKAISECGSRDKLATACGVSVMTVSNWVRGFG-IKAKHIKLISDATNGKISVDEI 59


>UniRef50_A6WVE7 Putative uncharacterized protein n=1 Tax=Ochrobactrum anthropi
          ATCC 49188 RepID=A6WVE7_OCHA4
          Length = 79

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
              +A   VGG  A+AR L +   ++  W    +++PAER   IER +   +   ELRP
Sbjct: 18 EIVAKAAEEVGGVVALARALNIKHTAMYSW----KRVPAERVLEIERVSG--ISRHELRP 71

Query: 66 DI 67
          D+
Sbjct: 72 DL 73


>UniRef50_D1NX87 Cytoplasmic chaperone TorD n=1 Tax=Providencia rustigianii DSM
          4541 RepID=D1NX87_9ENTR
          Length = 78

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 8  FKQACAVVGGQSAMARLLG------VSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCE 61
           ++A    GGQ+ +A+ +       V    +  W+   +++PA++   +ERA+   V   
Sbjct: 13 LQKAIDATGGQTQLAKRISDISNKPVKQQQIWNWLNRNKRVPADKVLIVERASG--VSRN 70

Query: 62 ELRPDI 67
           LRPD+
Sbjct: 71 TLRPDL 76


>UniRef50_A4N1A6 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae
          RepID=A4N1A6_HAEIN
          Length = 67

 Score = 65.8 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 3/67 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  + Y   +     G Q+  AR +G++P  ++Q I G  + P     AIE+AT+ +V  
Sbjct: 1  MSLKAYFSDKP---RGFQADFARKIGIAPSFLSQIISGKSKAPPSVAVAIEKATKRQVKK 57

Query: 61 EELRPDI 67
           E+ PD+
Sbjct: 58 SEILPDV 64


>UniRef50_D2TX41 Phage regulatory protein n=1 Tax=Arsenophonus nasoniae
          RepID=D2TX41_9ENTR
          Length = 96

 Score = 65.8 bits (159), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          +   K     +  QS + R LG  P +++ W +   ++PAE   ++ +    ++   ELR
Sbjct: 20 DIDLKNKIFAITTQSELGRKLGKRPQTISVWFR--NRVPAECVFSMAKVLEWQITPHELR 77

Query: 65 PDI 67
          PDI
Sbjct: 78 PDI 80


>UniRef50_B7UQF7 Predicted protein n=3 Tax=Escherichia coli RepID=B7UQF7_ECO27
          Length = 93

 Score = 65.4 bits (158), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
          Q   A   G S   + + +   + L A  C  IERA+ GEV  ++LRP  DW  +     
Sbjct: 16 QRMFACECGTSIGYLRKALSKGQVLGASLCVLIERASNGEVTRQQLRP-FDWMNIWPELE 74

Query: 78 CSQ 80
           ++
Sbjct: 75 DTK 77


>UniRef50_B7KYS5 Putative uncharacterized protein n=1 Tax=Methylobacterium
          chloromethanicum CM4 RepID=B7KYS5_METC4
          Length = 82

 Score = 64.6 bits (156), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M       + A  ++G ++ +    GV+  ++ +  K   ++  E    IE+ATR  +  
Sbjct: 1  MSTR-SLIQAAITLLGSEAKLGAACGVTQGAIWK-AKTAGRVSGELAVKIEKATRCAIPR 58

Query: 61 EELRPDI 67
            LRPD+
Sbjct: 59 WRLRPDL 65


>UniRef50_D0FT83 Lambda repressor-like protein n=1 Tax=Erwinia pyrifoliae
          RepID=D0FT83_ERWPY
          Length = 74

 Score = 64.6 bits (156), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N   ++A  +VG Q  +A+ +GV+  +V++W+ G   + ++   A+  AT G V  EE+
Sbjct: 2  NIVIQKAIDIVGSQRELAQKVGVNQSAVSKWLCGGG-IRSKYITALVIATNGTVTFEEI 59


>UniRef50_B1G5M8 Putative uncharacterized protein n=1 Tax=Burkholderia graminis
          C4D1M RepID=B1G5M8_9BURK
          Length = 102

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 7  SFKQACAVVGGQSAMARLLG----VSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          + ++A  + G +  +AR +      +   ++ W      +P +  P +  A  G+V   E
Sbjct: 14 ALQKAIEICGSRRELARRISLFSPCTSGRIDMWFSRNTVVPIDAVPFVAAAVDGQVSVYE 73

Query: 63 LRPDI--DWSYLRRSACCS 79
          L P+    W  LR      
Sbjct: 74 LCPEYAEGWRVLRALLLNE 92


>UniRef50_C3X1S2 Predicted protein n=1 Tax=Oxalobacter formigenes HOxBLS
          RepID=C3X1S2_OXAFO
          Length = 90

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
            F +A  + GG + ++R + +      Q  +G  +LP      I  AT G V  +++ P
Sbjct: 3  EEFNKAIQICGGLTKLSRAIDMPVSFAWQIKEGKSRLPEGYGRRIFDATHGAVSLKKMFP 62

Query: 66 DIDWSYLR 73
          D  W    
Sbjct: 63 D-SWMNYW 69


>UniRef50_Q6J1N2 Gp45 n=1 Tax=Burkholderia phage BcepC6B RepID=Q6J1N2_9CAUD
          Length = 72

 Score = 64.2 bits (155), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             K A    GG + +A   G+S  S+ +WI    ++P +R   + R T  +    +L P
Sbjct: 2  SLIKDAVTEAGGATVVATAFGISRISIYEWID-KGRVPEKRVLPLARLTNWKFTPHQLAP 60


>UniRef50_C8U3E2 Predicted antirepressor protein Cro n=1 Tax=Escherichia coli
          O103:H2 str. 12009 RepID=C8U3E2_ECO10
          Length = 90

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK  +Y        +  Q+A+AR LGV+P +VNQW      +PA     +      +V  
Sbjct: 1  MKGNDY---DKLRTLIAQNAIARNLGVTPQAVNQWFS-KNTIPARFVLRVCEVVAWKVTP 56

Query: 61 EELRPDI 67
            LRPD+
Sbjct: 57 HGLRPDL 63


>UniRef50_C7LJH3 Phage related protein n=1 Tax=Brucella microti CCM 4915
           RepID=C7LJH3_BRUMC
          Length = 192

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 11  ACAVVGGQSAMARLLGVSP-PSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           A    GG  A+AR LG+    SV  W    +++PA+    IE  T   + C ELRPDI
Sbjct: 127 AIQAAGGVVALARGLGIKHHQSVYGW----KKIPADYVLRIEALTG--IPCCELRPDI 178


>UniRef50_C6XEC1 Phage regulatory protein n=1 Tax=Methylovorus sp. SIP3-4
          RepID=C6XEC1_METSD
          Length = 81

 Score = 63.1 bits (152), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 2  KKENYSFKQACAVV-GGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          K +     Q  +++ GG+ A+A  L +S  ++++W+K   ++P ER   +E     ++  
Sbjct: 6  KHQKNVVDQVISLIEGGRPALAAALDISEQAIHKWVKS-GRIPTERVRDVEELINFQITR 64

Query: 61 EELRPDI 67
           E+RPDI
Sbjct: 65 YEMRPDI 71


>UniRef50_C5CJM5 Putative uncharacterized protein n=1 Tax=Variovorax paradoxus
          S110 RepID=C5CJM5_VARPS
          Length = 81

 Score = 62.3 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 9  KQACAVVG-GQSAMARLLGVS-PPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
          ++   + G   + +AR+LG     +V  W  G+   P   C  +E   +G++  +ELRP 
Sbjct: 8  RKVLKLAGNSHAEVARILGYEDRRNVWPWTNGLNPFPPYHCRTLEDHFKGQITRKELRPH 67

Query: 67 IDWSYLRRSACC 78
           DW         
Sbjct: 68 -DWQKHWPDLAI 78


>UniRef50_B1J5K2 Putative uncharacterized protein n=1 Tax=Pseudomonas putida W619
          RepID=B1J5K2_PSEPW
          Length = 103

 Score = 61.9 bits (149), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
            +++     GGQ   A  L V+  +V+ W++G   + AE     +R T G     ELRP
Sbjct: 7  EIYQRLVEHFGGQDLTAAALKVNQSTVSGWVRGKHAMSAETAFLAQRKTCGAFSAIELRP 66

Query: 66 DI 67
           +
Sbjct: 67 SL 68


>UniRef50_C8UC34 Predicted antirepressor protein Cro n=2 Tax=Escherichia coli
          RepID=C8UC34_ECO1A
          Length = 85

 Score = 61.5 bits (148), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q+A+AR +GV+P +VN W      +P+     +      +V    LRPD+
Sbjct: 16 QNAIARYIGVTPQAVNLWFS-KNSVPSRFVLRVCELVEWKVTPHGLRPDL 64


>UniRef50_C6RL40 Putative uncharacterized protein n=2 Tax=Acinetobacter
          RepID=C6RL40_ACIRA
          Length = 82

 Score = 61.5 bits (148), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 29/61 (47%)

Query: 19 SAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACC 78
             A+    S   +NQ + G  +  A     I++ + G V C+ L P+ D++Y+R  A  
Sbjct: 22 KDFAKRCQTSLGYLNQIMYGNSKCSASLAIKIDKESDGAVSCDLLCPEADFNYVRNQALI 81

Query: 79 S 79
          +
Sbjct: 82 A 82


>UniRef50_C4TVB5 Gp45 n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TVB5_YERKR
          Length = 82

 Score = 58.1 bits (139), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 1  MKKENYSF-KQACAVVGGQSAMARLLGV-SPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          M  +  +   +A   VG  S ++R     S  SV  WI    Q+PA+R   +    + EV
Sbjct: 1  MSSKCKNITDRAIRAVGSLSRVSRAFEFKSVQSVANWI-INNQVPADRVIQLCAMGKWEV 59

Query: 59 LCEELRPDI 67
             ELRPDI
Sbjct: 60 TPHELRPDI 68


>UniRef50_D2U4K7 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae
          RepID=D2U4K7_9ENTR
          Length = 76

 Score = 57.3 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIE--RATRGEV 58
          M    Y   +       Q++ A ++GVS   ++Q I G  +   + C AIE  RAT   V
Sbjct: 1  MTLNEYLLHKKI----SQTSFATIVGVSQGFISQVIAGKYK--PKGCKAIEWSRATEWLV 54

Query: 59 LCEELRPD 66
             EL  D
Sbjct: 55 TPHELNSD 62


>UniRef50_A1TVQ0 Putative uncharacterized protein n=2 Tax=Acidovorax
          RepID=A1TVQ0_ACIAC
          Length = 84

 Score = 57.3 bits (137), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 28 SPPSVNQWIKGV-RQLP-AERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
          S   + QW  G  R++P    C AIE+AT G+V  ++LRP  DW+ +    
Sbjct: 31 SDAQIRQWQHGYARRIPSPLNCVAIEQATGGQVTRKDLRPH-DWAAIWPEL 80


>UniRef50_A7FIY8 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=A7FIY8_YERP3
          Length = 68

 Score = 56.9 bits (136), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 16/84 (19%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKK     K      GG    A  LG+  P+V +W      +P ++   IER T G    
Sbjct: 1  MKK-----KDVVKFFGGVVNTAIALGIKHPAVCRW---GEIIPEKQAMRIERITHG---- 48

Query: 61 EELRPDIDWSYLRRSACCSQNMSV 84
           ELR D     + +S+    N  +
Sbjct: 49 -ELRYD---PAMYQSSLIKINTQI 68


>UniRef50_C7BGF8 Putative uncharacterized protein n=2 Tax=root RepID=C7BGF8_9CAUD
          Length = 79

 Score = 56.2 bits (134), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 13 AVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR-----PDI 67
          A  G    +A  +G     ++ W    R +P      IER T G+V   +L      PDI
Sbjct: 9  AERGRLVKLAAAIGAHASDLSAWANKKRPVPIPFGWPIERETDGQVRRVDLFSADVIPDI 68

Query: 68 DWSYL 72
           W  L
Sbjct: 69 -WPEL 72


>UniRef50_A7C750 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS
          RepID=A7C750_9GAMM
          Length = 110

 Score = 55.8 bits (133), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 3  KENYSFKQACAVVG--GQSAMARLLGVSPPSVNQWIKGVRQLPAERC---------PAIE 51
          KEN   K+  + +G   Q   A  +GVSP +VN+W +G  ++P E             IE
Sbjct: 2  KENIDLKREISELGFESQKKFAEFMGVSPRTVNRWCRGFSKVPREVVSLCTTLREKQRIE 61

Query: 52 RATRGEVLCEELR-PD---IDWS 70
          R  +  V     R PD   ++W 
Sbjct: 62 REVKKIVEEGYSRLPDGRMVNWH 84


>UniRef50_B0VKG4 Putative uncharacterized protein n=3 Tax=Acinetobacter
          RepID=B0VKG4_ACIBS
          Length = 83

 Score = 54.2 bits (129), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 9/75 (12%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR--GEVLCEELRPD--I 67
             +GG +A+ARLLG++PPSV+ W    + +P ++   +       G    +EL PD   
Sbjct: 7  IDKLGGVTAVARLLGITPPSVSGW----KAIPLDKKIRLAVIAEDLGLTTRKELFPDNYQ 62

Query: 68 D-WSYLRRSACCSQN 81
          D W  LR     S+N
Sbjct: 63 DIWIELRPQTTKSKN 77


>UniRef50_B0QXI3 Putative uncharacterized protein n=1 Tax=Haemophilus parasuis
          29755 RepID=B0QXI3_HAEPR
          Length = 74

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
          Q   A   G +   + + I     L AE C AIER ++GEV  + L P   W +      
Sbjct: 16 QRDFAERCGTTLGYLRKSISKKSILGAEICVAIERESKGEVTRKHLVPH--WEFRWPELI 73


>UniRef50_A4SLB6 Phage transcriptional regulator, Cro-like protein n=1
          Tax=Aeromonas salmonicida subsp. salmonicida A449
          RepID=A4SLB6_AERS4
          Length = 62

 Score = 53.8 bits (128), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 8/62 (12%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKKE+     A +  G  + +AR L +S P+V++W      +P  R   IE  T G++  
Sbjct: 1  MKKED-----AISYFGSAAELARNLNISEPAVSRWGDI---IPKGRAYQIEVLTGGKLKA 52

Query: 61 EE 62
          ++
Sbjct: 53 DQ 54


>UniRef50_P14816 Gene 30 protein n=2 Tax=root RepID=VG30_BPPH8
          Length = 73

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 2  KKENYS--FKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          KK N S   ++A   VG  Q  +A  +GV+P ++N   K    LP  +    E  T   +
Sbjct: 4  KKSNASTPLEKAINAVGGSQKVLAEKVGVTPQAINMLKKRGGSLPVTKMRKYEEVTG--L 61

Query: 59 LCEELRPDI 67
            E L P I
Sbjct: 62 PREVLYPGI 70


>UniRef50_Q88MM1 Transcriptional regulator, Cro/CI family n=4
          Tax=Gammaproteobacteria RepID=Q88MM1_PSEPK
          Length = 58

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          QA    G  SA+A+ LGV+  +V QW      +P  R   IER T+G +  
Sbjct: 5  QAIQHFGSISALAKALGVTYEAVRQWAD----VPELRQYQIERLTKGALKA 51


>UniRef50_Q083R5 Uncharacterized protein n=1 Tax=Shewanella frigidimarina NCIMB
          400 RepID=Q083R5_SHEFN
          Length = 61

 Score = 52.3 bits (124), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
             A  GGQ  +A++L VS P++++W      +P  R   I+  T G++ 
Sbjct: 5  DVIAHFGGQGRLAKVLDVSQPAISKW---GDTVPLLRAYQIQVITNGKLK 51


>UniRef50_B4EFR1 Hypothetical phage protein n=1 Tax=Burkholderia cenocepacia J2315
          RepID=B4EFR1_BURCJ
          Length = 84

 Score = 52.3 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M K     +Q       Q   A   G +   + + +          C +IER ++G V  
Sbjct: 3  MDKLKSLLRQMTREEQAQFCFA--CGTTLGYMRKALSVGAIFGPALCVSIERESKGLVTR 60

Query: 61 EELRPDIDWSYLRRSACCSQNMSV 84
           +L P+ DW  +       Q   V
Sbjct: 61 RDLHPN-DWQDIWPELA-DQPTQV 82


>UniRef50_P09964 Regulatory protein cro n=16 Tax=root RepID=RCRO_BPP22
          Length = 61

 Score = 52.3 bits (124), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
          K      G Q A+A+ LG+S  +V+QW      +P +    +E  T G +  +E
Sbjct: 4  KDVIDHFGTQRAVAKALGISDAAVSQW---KEVIPEKDAYRLEIVTAGALKYQE 54


>UniRef50_B6AS87 Putative uncharacterized protein n=1 Tax=Leptospirillum sp. Group
          II '5-way CG' RepID=B6AS87_9BACT
          Length = 72

 Score = 51.9 bits (123), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 1  MKKENYSFKQACAVVGGQSA-MARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
          MK   Y  +    +   Q   +A  +G S   + Q          +    IE AT G+V 
Sbjct: 1  MKLNEYMRE----LTRSQKEDLAGRVGTSLNYLFQLSGEFSVPGPKIALRIEHATGGQVT 56

Query: 60 CEELRPDI 67
            ELRPDI
Sbjct: 57 RHELRPDI 64


>UniRef50_C8U7L5 Predicted transcriptional regulator n=3 Tax=Enterobacteriaceae
          RepID=C8U7L5_ECO10
          Length = 79

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  + Y  + +      Q+  A ++GVS   V+  I G       +     +AT   V  
Sbjct: 1  MTLDEYLRQSSIR----QADFAAIVGVSQGFVSGVITGRYMPQGRKAIEWAKATDWNVTP 56

Query: 61 EELRP 65
           EL P
Sbjct: 57 HELNP 61


>UniRef50_C6M779 Conserved domain protein n=3 Tax=Proteobacteria
          RepID=C6M779_NEISI
          Length = 61

 Score = 51.1 bits (121), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
                G +SA A+ L VSP +V QW      +P ++   IE+ T G++ 
Sbjct: 5  DVLKFFGSKSATAQHLDVSPSAVTQWKDI---IPEKQAYRIEKITNGKLK 51


>UniRef50_Q2SPC5 Uncharacterized protein conserved in bacteria, prophage-related
          n=9 Tax=Gammaproteobacteria RepID=Q2SPC5_HAHCH
          Length = 64

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
           A A  GG+S +A  LGV+P SV+Q       LP  R   +ER T G++ 
Sbjct: 5  DAVAYFGGKSKLANALGVAPASVSQ---RGEFLPMLRAYQVERMTGGKLR 51


>UniRef50_UPI0001873AE2 hypothetical protein PSPTOT1_4062 n=1 Tax=Pseudomonas syringae
          pv. tomato T1 RepID=UPI0001873AE2
          Length = 89

 Score = 50.0 bits (118), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 24 LLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
            G +   + Q   G +Q  A     +ER T G +  + LRP+ DW  +     
Sbjct: 34 RTGTTRGYLRQIAYGNKQASATVASVLERETEGLLTRKSLRPN-DWHVIWPELA 86


>UniRef50_C4U3C1 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii
          ATCC 33638 RepID=C4U3C1_YERKR
          Length = 72

 Score = 50.0 bits (118), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 8  FKQACAVVGG-QSAMARLLGVSPPSVNQWI-KGVRQLPAERCPAIERATRGEVLCEELRP 65
           ++A   VGG Q  +A+ LGVS  ++     +G   LP +R     R T   +  E+L P
Sbjct: 9  LEKAVQAVGGKQKTLAQRLGVSEQAITLMKQRGKGYLPRKRIEDFVRVTG--LKKEDLYP 66

Query: 66 DI 67
          D+
Sbjct: 67 DV 68


>UniRef50_B1WN54 Transcriptional regulator, Cro/CI family-related protein n=1
          Tax=Vibrio fischeri ES114 RepID=B1WN54_VIBF1
          Length = 61

 Score = 49.6 bits (117), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKKE           GG   +A  L +   +V+QW      +P  R   IER T G +  
Sbjct: 1  MKKEA-----VIKHFGGVVKVASALKIDHSAVSQW---GENVPQLRAFEIERITNGALKA 52

Query: 61 EELRPDID 68
           +  P+ D
Sbjct: 53 -DFTPNQD 59


>UniRef50_P75975 Uncharacterized protein ymfT n=13 Tax=root RepID=YMFT_ECOLI
          Length = 66

 Score = 49.2 bits (116), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q  +A  +G +P  +     G ++        +E+ T G +   +LRPDI
Sbjct: 13 QGELAGKVGSTPGYLRLVFNGYKKASFVLAKKLEQYTSGAITKSDLRPDI 62


>UniRef50_C0AW02 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC
          35198 RepID=C0AW02_9ENTR
          Length = 82

 Score = 48.8 bits (115), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK   Y  KQ       QS   +++GV+   ++Q I G       +       T   V  
Sbjct: 1  MKLGLYLKKQKI----SQSEFGKMVGVTQGFISQVIAGSYLPKGRKAIEWSAKTNWLVTP 56

Query: 61 EELRPDIDWSYLRRSACCS 79
           +L P +D+          
Sbjct: 57 HDLNP-VDYPNPWDGLPKE 74


>UniRef50_A3ETJ5 Putative uncharacterized protein n=1 Tax=Leptospirillum rubarum
          RepID=A3ETJ5_9BACT
          Length = 70

 Score = 48.8 bits (115), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query: 20 AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           MA     +   + +   G  +     C  IE AT G+V   ELRPDI
Sbjct: 17 KMAEEAKTTVAYLYKLAGGHGKPGWRICSRIEHATEGQVTRHELRPDI 64


>UniRef50_A9BV81 Putative uncharacterized protein n=1 Tax=Delftia acidovorans
          SPH-1 RepID=A9BV81_DELAS
          Length = 99

 Score = 48.4 bits (114), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 15/35 (42%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVR 40
              +A A  G Q  +A  +GV    V+ W  G R
Sbjct: 5  ELIDKAVAAAGSQVKLAEKMGVKQQEVSSWRTGKR 39


>UniRef50_Q2W5Y9 Putative uncharacterized protein n=1 Tax=Magnetospirillum
          magneticum AMB-1 RepID=Q2W5Y9_MAGSA
          Length = 65

 Score = 48.4 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 7  SFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
          +  +   + G  + A+A L+GV+ P+V++W  G       +   I  AT G V   +  
Sbjct: 2  TLARFMELAGMTEEALAALVGVTQPAVSKWKHGRAIPRPAQMAKIVAATEGAVTPADFF 60


>UniRef50_C6XEC2 Putative phage repressor n=1 Tax=Methylovorus sp. SIP3-4
          RepID=C6XEC2_METSD
          Length = 226

 Score = 48.4 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          M +     K+A    G  Q+ +A   GVS  +V++WI G  Q+  E    +  A  
Sbjct: 1  MNEVGKLIKEALEHQGKTQAWLAEFCGVSNNAVSKWINGSGQISRENIRKVANALG 56


>UniRef50_Q7ME19 Putative uncharacterized protein VVA0865 n=1 Tax=Vibrio
          vulnificus YJ016 RepID=Q7ME19_VIBVY
          Length = 84

 Score = 48.4 bits (114), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 22 ARLLGVSPPSVNQWIKGVRQ-LPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQ 80
          A   G +   + + +   R  +  + C  +ER + G+V  ++LRPD DW  +       +
Sbjct: 20 AIRAGTTLRYLRKIVSIKRTTIHPKTCALLERESSGKVSRKDLRPD-DWFEIWPELAVKE 78


>UniRef50_Q2P3J1 Phage-related protein n=1 Tax=Xanthomonas oryzae pv. oryzae MAFF
          311018 RepID=Q2P3J1_XANOM
          Length = 140

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 5  NYSFKQACA--VVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          +   + A    + G    +A  +G+S  +++QW  G + +P ER   + R   
Sbjct: 4  DTLVELAIQRSLRGSLRGLAEQMGISSGALSQWKLGNKPIPDERIQQLARIAG 56


>UniRef50_C4SVT1 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
          RepID=C4SVT1_YERFR
          Length = 86

 Score = 47.7 bits (112), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 4/64 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK   Y  +        Q   A  +  S   V+  + G           I  AT+  V  
Sbjct: 5  MKLSEYLNRNGI----SQKIFATSINASQGYVSHIVVGRHAPRGIMALNIAAATQWAVTP 60

Query: 61 EELR 64
           EL 
Sbjct: 61 HELN 64


>UniRef50_D0ZTD1 Putative uncharacterized protein n=1 Tax=Salmonella enterica
          subsp. enterica serovar Typhimurium str. 14028S
          RepID=D0ZTD1_SALT1
          Length = 79

 Score = 47.3 bits (111), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
           K   +    Q ++    G+S  +V +W+     +P  R   +      +V   E+ P
Sbjct: 5  LKIKISNHMTQMSIGEHFGISSQAVGKWL-RKGVIPPRRILPLCEILEWKVTPHEIDP 61


>UniRef50_B0U2N7 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa M12
          RepID=B0U2N7_XYLFM
          Length = 81

 Score = 46.5 bits (109), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 22/50 (44%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          Q+  AR    +   + + +   ++        ++ A+ G V   +LRPD+
Sbjct: 16 QAHYARKANTTIGYLRKALCKGQRFDGALARRLDEASGGRVSRYDLRPDV 65


>UniRef50_B2I5H4 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa M23
          RepID=B2I5H4_XYLF2
          Length = 86

 Score = 46.5 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 20 AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           +A     S  ++     G ++   +   ++ER T G V   +LRPDI
Sbjct: 23 QLATRAVCSHKTLYMIALGHKRAGHQLVKSLERVTNGAVSRYQLRPDI 70


>UniRef50_B7QPX1 Putative uncharacterized protein n=1 Tax=Ruegeria sp. R11
          RepID=B7QPX1_9RHOB
          Length = 74

 Score = 46.5 bits (109), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 2  KKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          K  +Y  ++       Q+  A  +GVS   +++   G  +   +    IERAT G V  
Sbjct: 3  KLSSYLKEKRIR----QADFAEQVGVSQGVISRLANGASKPGLDLAVRIERATAGSVSA 57


>UniRef50_A1W3Z6 Putative uncharacterized protein n=2 Tax=Acidovorax
          RepID=A1W3Z6_ACISJ
          Length = 97

 Score = 46.1 bits (108), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPA 44
          M + N+  ++A ++ G +  +A++LG+  P++  W  G R   A
Sbjct: 4  MSQLNFLIEKAASIAGSEYKLAQMLGMQQPTITAWKTGKRPCSA 47


>UniRef50_B8INW8 Transcriptional regulator, XRE family n=1 Tax=Methylobacterium
          nodulans ORS 2060 RepID=B8INW8_METNO
          Length = 79

 Score = 46.1 bits (108), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MK   Y   +        S  A  +GV+  ++ ++  G R+   +    I RAT G+V  
Sbjct: 1  MKLAAYLADREIKD----SDFAARIGVTRQTLWRYKSGERRPEWDVLERISRATDGQVTP 56

Query: 61 EELRPDID 68
           +   D  
Sbjct: 57 NDFLSDAP 64


>UniRef50_B0N104 Putative uncharacterized protein n=2 Tax=Bacteria
          RepID=B0N104_9FIRM
          Length = 242

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 3/60 (5%)

Query: 5  NYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N +  +     G  Q  +A  LGVS  SV++W  G      ER   I       +  +EL
Sbjct: 4  NDNLNKYRKQKGLSQEELAFRLGVSRQSVSKWESGQSTPELERIIEIADLFG--ISLDEL 61


>UniRef50_D2U1N3 Phage transcriptional regulator n=1 Tax=Arsenophonus nasoniae
          RepID=D2U1N3_9ENTR
          Length = 72

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
           + K      GG  A+A+LL +S  ++ QW      +P  R   I +     +  E+L
Sbjct: 12 EALKATIEKAGGVPALAKLLNISDQAIRQWTY-KGYIPPSRYAQINKLLD--IPLEDL 66


>UniRef50_D0FSA9 Lambda repressor-like protein n=2 Tax=Erwinia pyrifoliae
          RepID=D0FSA9_ERWPY
          Length = 67

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCE 61
          + A    G +S +A    V+ PSV +W    R +P  R   +   T G +  E
Sbjct: 4  EDAIKFFGSKSKLAAAANVTRPSVTRW---GRIIPKLRAMELAAITNGALQYE 53


>UniRef50_D2UAK5 Hypothetical phage-related protein n=2 Tax=Xanthomonas
          albilineans RepID=D2UAK5_XANAL
          Length = 275

 Score = 45.4 bits (106), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 5  NYSFKQACA--VVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          N   + A    + G    +A  +G+S   ++QW  G + +P ER   + +   
Sbjct: 4  NTLVELAIQRSLRGSLRGLAEQMGISSGVLSQWKLGNKPIPDERIQQLAKIAG 56


>UniRef50_A5CUZ3 Putative plasmid maintenance system, antidote protein n=1
          Tax=Clavibacter michiganensis subsp. michiganensis
          NCPPB 382 RepID=A5CUZ3_CLAM3
          Length = 367

 Score = 45.4 bits (106), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           Q   A+  G+S   VNQ ++G   +  E    IER T 
Sbjct: 32 SQVQFAQRCGLSTKHVNQILQGQSAVTPETALLIERVTG 70


>UniRef50_D2TVN9 Conserved hypothetical phage protein n=3 Tax=Arsenophonus
          nasoniae RepID=D2TVN9_9ENTR
          Length = 71

 Score = 45.4 bits (106), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
            +    +  +A++LG+SP +V QW      +P +    IE+ T G + 
Sbjct: 6  VVSYFRSKRNVAKVLGISPQAVGQWRD---VIPEKSALLIEKITNGSLK 51


>UniRef50_B3G2I3 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa
          RepID=B3G2I3_PSEAE
          Length = 109

 Score = 45.0 bits (105), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 8  FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLP----------AERCPAIERATRGE 57
           KQA    GG S +A    VSP +V +W+    +LP          AER   + R    +
Sbjct: 34 LKQAVEKAGGVSQVAASCEVSPRAVYKWLAS-GRLPRTDYTGETDYAERICGLARGKGFD 92

Query: 58 VLCEELR 64
          +   +LR
Sbjct: 93 LSPADLR 99


>UniRef50_Q8W6G8 Putative uncharacterized protein orf59 n=1 Tax=Sinorhizobium
          phage PBC5 RepID=Q8W6G8_9CAUD
          Length = 80

 Score = 44.6 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%)

Query: 15 VGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPD 66
           G Q  +A  LG  P +++QW    +++P E    IE  T   +   +L P+
Sbjct: 12 RGAQKRLAAHLGKWPSTISQW----KRVPVEYLAEIEAFTG--IPRNQLLPE 57


>UniRef50_D2C499 Transcriptional regulator, XRE family n=7 Tax=Thermotogaceae
          RepID=D2C499_THENR
          Length = 127

 Score = 44.6 bits (104), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
           Q  +A+ LGVS   V++   G + +       I  A  G++ 
Sbjct: 49 TQKDLAKKLGVSQSMVSKIETGEKNISIRVLAKIVAALGGKIK 91


>UniRef50_D0TRF9 HigA family addiction module antidote protein n=6 Tax=Bacteroides
          RepID=D0TRF9_9BACE
          Length = 104

 Score = 44.6 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 4  ENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
               K+     G  Q   A ++GVS   +N  + G R +  +    IE AT 
Sbjct: 13 PGEIIKEELQSRGISQKRFAEVVGVSYTMLNDILNGRRPVSTDFALLIEAATN 65


>UniRef50_B1VF05 Putative transcriptional regulator (HTH_3 family) n=1
          Tax=Corynebacterium urealyticum DSM 7109
          RepID=B1VF05_CORU7
          Length = 115

 Score = 44.6 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 6  YSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
           + + A +  G  Q  +A   G+S  +V++ +KG R +       I  AT   V
Sbjct: 12 SAIESALSSAGLSQRDLAARTGLSQSTVHRILKGERNVKMPELIRIADATGCTV 65


>UniRef50_C7RCB9 Transcriptional regulator, XRE family n=1 Tax=Kangiella koreensis
          DSM 16069 RepID=C7RCB9_KANKD
          Length = 242

 Score = 44.6 bits (104), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
           Q   AR LG+    +++          E    +   T  EV  +E+  D+D  Y+R++ 
Sbjct: 17 TQPEFARKLGIEQSYLSKMENDKSIPSTEMFDKLC--TAYEVTPDEMLKDLDREYIRQN- 73

Query: 77 CCSQNMSVKQLNDSNKSS 94
               +     N  +K +
Sbjct: 74 LMHIPIIANNSNSKHKIA 91


>UniRef50_B9JNX2 Adenylate/guanylate cyclase protein n=3
          Tax=Rhizobium/Agrobacterium group RepID=B9JNX2_AGRRK
          Length = 1342

 Score = 44.2 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 20/37 (54%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
           Q+ +A  LG+   ++++W  G  +   ++ PAI + 
Sbjct: 27 SQTELAAELGLKQQAISRWEAGTHRPSVDQVPAIAKL 63


>UniRef50_Q79RI9 HTH-type transcriptional regulator for conjugative element R391
          n=22 Tax=Gammaproteobacteria RepID=TR96_PRORE
          Length = 215

 Score = 44.2 bits (103), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
          MK  +     A  + G  QS +AR +G+   S++Q   G     +     I  A
Sbjct: 1  MKTLSERLNHALQLTGVTQSELARRIGIKQQSISQICSGKSA-RSRYTMQIAEA 53


>UniRef50_Q1LA95 Transcriptional regulator, XRE family n=1 Tax=Cupriavidus
          metallidurans CH34 RepID=Q1LA95_RALME
          Length = 233

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 4/65 (6%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
          M ++N + K+A  +    QS +A+ LG+S  + ++W  G  ++P  +  ++  A    V 
Sbjct: 1  MVRKN-AMKRARRLARLTQSEIAKRLGLSQSTYHRWESGEIEVPEAKVISLSEALG--VS 57

Query: 60 CEELR 64
           E LR
Sbjct: 58 VEYLR 62


>UniRef50_B1M2M6 Transcriptional regulator, XRE family n=1 Tax=Methylobacterium
          radiotolerans JCM 2831 RepID=B1M2M6_METRJ
          Length = 84

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M+  +Y  +         +  A ++G +  +V +++ G R+   ++   IER T G V  
Sbjct: 5  MRLTDYLRQHELTH----TEFAAMIGATQAAVTRYVNGRRKPSLDKLILIERVTEGAVRA 60

Query: 61 EEL 63
           + 
Sbjct: 61 LDF 63


>UniRef50_C5CH39 Transcriptional regulator, XRE family n=1 Tax=Kosmotoga olearia TBF
           19.5.1 RepID=C5CH39_KOSOT
          Length = 153

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 11/74 (14%)

Query: 6   YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE-------- 57
              ++   +   Q  +A++LG +   ++++    R+   E    I  A  G+        
Sbjct: 41  EVIERRAELKISQKKLAKILGTTQSVISRFENMGRKPGYEFIKRISEALGGKLMITLNGD 100

Query: 58  ---VLCEELRPDID 68
              V+  ELR  +D
Sbjct: 101 YAVVVPTELRERVD 114


>UniRef50_B7J7H3 Transcriptional regulator, putative n=1 Tax=Acidithiobacillus
          ferrooxidans ATCC 23270 RepID=B7J7H3_ACIF2
          Length = 243

 Score = 43.8 bits (102), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 5  NYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGV---RQLPA-ERCPAIERATR 55
          +   K A    G  Q+A+A  LG+S  S++QW+ G    R +P+ E    +   + 
Sbjct: 4  HERIKFAIKQSGFTQNALAEKLGISRGSISQWVSGNIATRTVPSRENLFRLAELSG 59


>UniRef50_Q728H0 Transcriptional regulator, putative n=4 Tax=Desulfovibrio vulgaris
           RepID=Q728H0_DESVH
          Length = 257

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 5   NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
                +A A+VGG  A+A + GVS  +V  W  G R         +       +  +   
Sbjct: 28  QQFIAEAIALVGGVRALASIAGVSERTVYAWKNGERFPSRTNLNRLSEHLE-HLSRQGYS 86

Query: 65  PDID---WSYLRRSACCSQNMSVKQLNDSNK 92
           P      W  LR     S      Q +D+++
Sbjct: 87  PSAPQPHWRALRERMPGSYAPQ--QPDDTDR 115


>UniRef50_B9P4Q9 Predicted protein n=1 Tax=Populus trichocarpa RepID=B9P4Q9_POPTR
          Length = 77

 Score = 43.4 bits (101), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSAC 77
             +A   G +P  + Q + G R         I  A    +L  +LRP  DW  +     
Sbjct: 11 ARELAVRAGTTPAYLYQVLTGRRAANPALARRI-NAADPRILLSDLRPG-DWHEIWPELA 68

Query: 78 CSQNMS 83
           +   +
Sbjct: 69 QATAQA 74


>UniRef50_C0EID5 Putative uncharacterized protein n=2 Tax=Clostridium
          RepID=C0EID5_9CLOT
          Length = 261

 Score = 43.1 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 5  NYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          N   +      G  Q  +A  LGVS  +V++W  G      E   A+       V  +EL
Sbjct: 4  NEKLQILRKEAGLSQERLAEKLGVSRQAVSKWESGQSTPDIENLSALSDLFG--VTLDEL 61


>UniRef50_C6SQ36 Plasmid maintenance system antidote protein n=1 Tax=Streptococcus
          mutans NN2025 RepID=C6SQ36_STRMN
          Length = 97

 Score = 43.1 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          QS  A  +GVS   V+  +   + L A+    +E+ T 
Sbjct: 23 QSDFAERIGVSQKHVSDLLNRKKFLNADLAVRVEQVTG 60


>UniRef50_B2HWL5 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          ACICU RepID=B2HWL5_ACIBC
          Length = 82

 Score = 42.7 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 1  MKKENYSFKQACAVVGGQS---AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE 57
          +K +  S       +G  S   A A   G +  ++ Q   G   +       I   + GE
Sbjct: 10 IKNQVSSLLAYMKKLGSDSEVQAFAEKCGTTKGNLLQIAYGGS-VSPILSKKISNQSGGE 68

Query: 58 VLCEELRPDI 67
          VL  +LRPDI
Sbjct: 69 VLLSDLRPDI 78


>UniRef50_D2U1D7 Conserved hypothetical phage protein n=1 Tax=Arsenophonus
          nasoniae RepID=D2U1D7_9ENTR
          Length = 65

 Score = 42.7 bits (99), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
              GG  A A++L +S  +V+ W      +P +    IE+ T+
Sbjct: 2  IDYFGGTVATAKVLNISKSTVSLW---GEVIPWKYALLIEKLTK 42


>UniRef50_A8V1Y7 Putative uncharacterized protein (Fragment) n=1
          Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V1Y7_9AQUI
          Length = 69

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 19 SAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL-RPD 66
            +A + G+  P ++    G R    +   AIE+AT GE+  E L  PD
Sbjct: 1  KELANIAGIPQPVISYIETGERLPTEKHALAIEQATNGEIKKEWLVFPD 49


>UniRef50_C7QJ41 Transcriptional regulator, XRE family n=1 Tax=Catenulispora
          acidiphila DSM 44928 RepID=C7QJ41_CATAD
          Length = 501

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDW 69
           Q+A+AR  GVS  +V  W  G R    +R   + R     V   E   D  W
Sbjct: 40 TQAAVARYFGVSAETVRSWFSGRRNPGPDRVRDLARFAG--VSPIEAFVDAGW 90


>UniRef50_C8Q8I4 Putative phage repressor n=1 Tax=Pantoea sp. At-9b
          RepID=C8Q8I4_9ENTR
          Length = 230

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          M K      +        ++ +AR+ GVSP +VN W K    +  +    I  AT 
Sbjct: 8  MSKATTRLDELLKAANLSKADLARIAGVSPQAVNNWFKRGE-IGKDSAIKISAATG 62


>UniRef50_B8IIS9 Putative plasmid maintenance system antidote protein, XRE family
          n=1 Tax=Methylobacterium nodulans ORS 2060
          RepID=B8IIS9_METNO
          Length = 81

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 7  SFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
          + +Q     G   S +A  +G +  ++++ ++G R +  +    +ER T G V  ++ 
Sbjct: 3  ALEQYFEETGDNVSKLAERMGRAATTISRPLRGERNVSLDIALDVERVTGGRVTADQF 60


>UniRef50_B4ESL6 Putative phage regulatory protein n=2 Tax=Enterobacteriaceae
          RepID=B4ESL6_PROMH
          Length = 61

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 7  SFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          + +      GG  A+A+ L +S  ++ QW +  R  PA     I     
Sbjct: 3  ALETTIKKAGGIPALAKKLKISDQAIRQWEQKGRIPPARYA-QINELFG 50


>UniRef50_D2MG99 Helix-turn-helix domain protein n=1 Tax=Rhodopseudomonas
          palustris DX-1 RepID=D2MG99_RHOPA
          Length = 89

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 20 AMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           +AR +G +  ++++   G + L     P I   T   +   ELRPD+
Sbjct: 25 DLARRIGTTTANLSRIETGKQALSDALLPKIVAETG--IPARELRPDL 70


>UniRef50_Q03UG5 Transcriptional regulator, xre family n=2 Tax=Leuconostoc
          RepID=Q03UG5_LEUMM
          Length = 204

 Score = 42.7 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M       +        Q+ +AR L VSP +++ W         E    I +     V  
Sbjct: 1  MTFSKSLKELRLLHELSQTQLARKLNVSPKTISNWENERNLPDIELIIKISKVLD--VTL 58

Query: 61 EEL 63
          +EL
Sbjct: 59 DEL 61


>UniRef50_B7S386 Putative uncharacterized protein n=1 Tax=marine gamma
          proteobacterium HTCC2148 RepID=B7S386_9GAMM
          Length = 109

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 12/69 (17%)

Query: 17 GQSAMARLLGVSPPS-VNQWIKGVRQLPAERCPAIERATRGEVLCE-----ELRPDIDWS 70
           QS +AR LG + P  VN+ +KG R +  +    +ERAT G+   E     +LR    W 
Sbjct: 13 SQSMLARQLGFNQPQPVNELVKGKRGITPKMALLLERATEGKYPAEFWLLAQLR----WE 68

Query: 71 Y--LRRSAC 77
              R+S  
Sbjct: 69 LSQARQSTP 77


>UniRef50_Q48LS2 Repressor protein c2, putative n=8 Tax=Gammaproteobacteria
           RepID=Q48LS2_PSE14
          Length = 308

 Score = 42.3 bits (98), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 3   KENYSFKQACAVVGGQS-AMARLLGVSPPSVNQWIKGVRQ-LPAERCPAIERATRGE 57
                  +A A  G +   +A   GV+  +V QWI G  + L  E   A+ RAT   
Sbjct: 92  TRQERIARAIAASGMKKGEIAAQCGVANSAVTQWISGESKSLRPENLYALARATGFR 148


>UniRef50_B0G1D1 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans
          ATCC 27755 RepID=B0G1D1_9FIRM
          Length = 159

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
           Q  +A  LGV   +++ W  GV  +  +    I +     V 
Sbjct: 23 TQKELAEKLGVKHNAISSWENGVNSIDIDTLFQICKIFGISVN 65


>UniRef50_C9ZE23 Putative LysR-family transcriptional regulator n=1
          Tax=Streptomyces scabiei 87.22 RepID=C9ZE23_STRSW
          Length = 306

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR-GEVL 59
          M  ++     A    G  SA+AR LG +  +V+Q               +ER T  G V 
Sbjct: 1  MTLDDLRVFVAVCRAGSLSAVARDLGCTQSAVSQ-----------HVRRLERETGVGLVE 49

Query: 60 CE 61
           +
Sbjct: 50 RQ 51


>UniRef50_A8U7M3 Dynamin n=1 Tax=Carnobacterium sp. AT7 RepID=A8U7M3_9LACT
          Length = 745

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          M   ++  K     +G  Q  +A  LG+   ++  W      +P      I   T  ++
Sbjct: 1  MNNNSFDLKNFRTTIGWTQKKLADKLGIGQSTITSWESNSGNIPFNSMLEIANVTGYKL 59


>UniRef50_Q60C36 DNA-binding protein n=3 Tax=Bacteria RepID=Q60C36_METCA
          Length = 386

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 2  KKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
               +        G  Q+ +AR LG +   V+Q I G   +  +    +ER   
Sbjct: 14 SPPGDTIADVLEERGWTQAELARRLGYTEKHVSQLINGKAAITEDTASRLERVLG 68


>UniRef50_C0FVH9 Putative uncharacterized protein n=1 Tax=Roseburia inulinivorans
          DSM 16841 RepID=C0FVH9_9FIRM
          Length = 178

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 1  MKKEN--YSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
          M +       ++     G  Q  MA+ LGV+ P+VN+W  G      E    I R 
Sbjct: 1  MTQMQIGSVIRKYRKECGLTQEEMAKRLGVTTPAVNKWENGNTNPDIELLAPIARL 56


>UniRef50_Q7D1G4 Putative uncharacterized protein n=1 Tax=Agrobacterium
          tumefaciens str. C58 RepID=Q7D1G4_AGRT5
          Length = 99

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 25 LGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          +GV+P +V QW    + +P E    +E+A    V     R D+
Sbjct: 53 IGVTPQAVAQW----KAIPPEHVLKLEKAFG--VSRHIQRADV 89


>UniRef50_A4W7L5 Regulator protein, putative n=1 Tax=Enterobacter sp. 638
          RepID=A4W7L5_ENT38
          Length = 75

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPA------IERATRGEVLCEELR 64
          A   VGGQ+A ARL G+S  ++++W+K       E          +  A+ G+   E LR
Sbjct: 7  AIDAVGGQTAAARLCGLSNVAIHKWVKNEALPRTEYTEKTNYSQVLAEASAGKFTAEWLR 66

Query: 65 ----PD 66
              PD
Sbjct: 67 QVANPD 72


>UniRef50_B0V853 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii
          AYE RepID=B0V853_ACIBY
          Length = 86

 Score = 41.9 bits (97), Expect = 0.006,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 21 MARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           A+  G +  ++ Q   G   + A     I + + G++   +LRPD+
Sbjct: 39 FAKSCGTTVNNLFQIAYGGS-VSATLSKTINKESEGKISLSDLRPDV 84


>UniRef50_Q8F1A5 Predicted transcriptional regulator n=2 Tax=Leptospira
          interrogans RepID=Q8F1A5_LEPIN
          Length = 134

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 1  MKKENYSFKQ-ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIE 51
          M ++    K       G Q      +G S  +++ W+ G   +P +    IE
Sbjct: 1  MSEQKKRLKTILLDFKGNQREFGVTIGKSKQTISGWLSGRFPIPEDAAITIE 52


>UniRef50_D2RAC0 DNA-binding protein n=2 Tax=Actinobacteria (class)
          RepID=D2RAC0_GARVA
          Length = 328

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          M   +   +        Q  +A  LGVS  +V++W         ER  A+ R   
Sbjct: 1  MILADKILELRKQNGWSQEELADKLGVSRQAVSKWEGAQSIPDMERIIALSRLFG 55


>UniRef50_C8TM97 Predicted phage repressor protein n=15 Tax=Escherichia coli
          RepID=C8TM97_ECO26
          Length = 133

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 6  YSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          Y   +     G  Q+ +AR +GV+  +V QW+ G     A     +   + 
Sbjct: 10 YRISKLLQETGWSQAELARRIGVTQQTVQQWVSGKATPKASSLDKLVEVSG 60


>UniRef50_A6STU3 Prophage Pfl 6 Cro repressor n=2 Tax=Pseudomonas
          RepID=A6STU3_PSEF5
          Length = 67

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 3  KENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEE 62
           +     +     G QSA+A  LGV+  +++Q       + A R   I     G V   E
Sbjct: 1  MKKIPLSKYLEEHGTQSALAAALGVNQSAISQM------VRAGRSIEITLYEDGRVEANE 54

Query: 63 LRP 65
          +RP
Sbjct: 55 IRP 57


>UniRef50_Q141U8 Putative uncharacterized protein n=2 Tax=Proteobacteria
          RepID=Q141U8_BURXL
          Length = 88

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 21 MARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQ 80
           A     +   + + I   ++L  + C  IER     V   +LRP  DW         + 
Sbjct: 19 FASTCRTTIGYLRKAISAGQELRPDLCVRIERYPGCPVGRIDLRPR-DWFENWPELVAAS 77

Query: 81 N 81
           
Sbjct: 78 P 78


>UniRef50_Q2G3X4 Putative uncharacterized protein n=1 Tax=Novosphingobium
          aromaticivorans DSM 12444 RepID=Q2G3X4_NOVAD
          Length = 88

 Score = 41.9 bits (97), Expect = 0.007,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
          G+  +A  +G +  ++N++  G R   A     I+ AT G+V 
Sbjct: 30 GERELAAAIGRTQVTINRYRNGNRFPDARTARLIDDATGGKVP 72


>UniRef50_Q2P3H3 18.2K protein n=1 Tax=Xanthomonas oryzae pv. oryzae MAFF 311018
          RepID=Q2P3H3_XANOM
          Length = 223

 Score = 41.5 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 1  MKKENYSFK--QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
          M  EN      +A       +A+A+ LGV+   V+ W  G   +P ++   +   
Sbjct: 15 MSAENELIDLVRAGGKFSSDNALAQKLGVTRAMVSSWRSGRYAMPDDQIAQLCAL 69


>UniRef50_A8VQI9 Putative transcriptional regulator, XRE family n=1 Tax=Bacillus
          selenitireducens MLS10 RepID=A8VQI9_9BACI
          Length = 210

 Score = 41.5 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 14/80 (17%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
           Q+ +A  +GVS  +V++W  G           +      +V  ++L            A
Sbjct: 17 SQAFVAEEMGVSRQAVSKWETGQSVPSTAHLIRLAEVLGCDV--QDL------------A 62

Query: 77 CCSQNMSVKQLNDSNKSSFD 96
             Q     Q  + + S  D
Sbjct: 63 EPDQEAQPAQPAEESGSKKD 82


>UniRef50_B7ML20 Putative uncharacterized protein n=13 Tax=Escherichia
          RepID=B7ML20_ECO45
          Length = 96

 Score = 41.5 bits (96), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          MKK      +     GG    A  LG S  +V+ W     ++P +    I+  T G +  
Sbjct: 17 MKKS-----EVLGYFGGVVKTAAALGTSKTTVSMW---GEEVPWKWALLIQAVTAGALKY 68

Query: 61 E 61
          E
Sbjct: 69 E 69


>UniRef50_C6LAS4 Transcriptional regulator n=1 Tax=Bryantella formatexigens DSM
          14469 RepID=C6LAS4_9FIRM
          Length = 336

 Score = 41.5 bits (96), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 14 VVGGQ--SAMARLLGVSPPSVNQWIKGVRQLPA---ERCPAIERATRGEVLCEELRPDI 67
          +VGG     +A++ GVS  +VN+ + G  ++     ER   + R         + RPD+
Sbjct: 5  IVGGITTKDLAQMCGVSRTTVNRALSGTGRISPDTKERILRVARE-------HDYRPDL 56


>UniRef50_C7CEU7 Putative plasmid maintenance system antidote protein, HTH
          DNA-binding domain n=1 Tax=Methylobacterium extorquens
          DM4 RepID=C7CEU7_METED
          Length = 364

 Score = 41.5 bits (96), Expect = 0.009,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 2  KKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
                  +     G  Q+  ARL G++P  V+  I G   +  E    +E    
Sbjct: 13 THPGEHLAEYIEERGWSQAEFARLAGLTPKLVSTIINGTNPVTPETALRLEHVLG 67


>UniRef50_Q5WH75 Transcriptional regulator n=2 Tax=Bacillus RepID=Q5WH75_BACSK
          Length = 74

 Score = 41.1 bits (95), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRS 75
              +A+ +G+S   ++Q   G RQ+ AE    I +     V  EEL     +  +R+ 
Sbjct: 16 SLEEVAKEVGISAGYLSQIESGKRQVSAEIAKLIAKL--FSVDREELFEATRFKAIRQE 72


>UniRef50_D1SQQ5 Transcriptional regulator, LysR family n=1 Tax=Acidovorax avenae
          subsp. avenae ATCC 19860 RepID=D1SQQ5_9BURK
          Length = 316

 Score = 41.1 bits (95), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 14/68 (20%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQ--------------WIKGVRQLPAER 46
          M   + ++ +A    G  +A AR  GVS P+V+                 +G R++P E 
Sbjct: 4  MYLPHLAYLRALIEHGSFAAAARACGVSQPAVSHGMRMLQARFDAPLLVREGRRRVPTEL 63

Query: 47 CPAIERAT 54
             +   +
Sbjct: 64 ALRVAAES 71


>UniRef50_B4DA78 Putative phage repressor n=1 Tax=Chthoniobacter flavus Ellin428
           RepID=B4DA78_9BACT
          Length = 311

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 17  GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEEL 63
               +A+L+G   P V   + G  ++       IE     E+  EEL
Sbjct: 110 SAGQLAKLIGYKAPIVENVVHGTGRISESMAEKIEEVLDHEITKEEL 156


>UniRef50_C1YIC5 Helix-turn-helix protein n=1 Tax=Nocardiopsis dassonvillei subsp.
          dassonvillei DSM 43111 RepID=C1YIC5_NOCDA
          Length = 274

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 18 QSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR--GEVL 59
          Q+ +AR L V+  +++ W  G R+LP E+   ++      G + 
Sbjct: 27 QTQVARALKVTQSTMSSWECGKRKLPVEQAERLDELFGSSGAIK 70


>UniRef50_C9L320 Toxin-antitoxin system, antitoxin component, Xre family n=9
          Tax=Bacteroidales RepID=C9L320_9BACE
          Length = 114

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 2  KKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
                 K      G  Q  +A  +G S   VN  I   R +  +     E A    +  
Sbjct: 22 THPGELIKDEIEFRGISQKKLADRMGASYTVVNDIINCKRAVNPQYALLFEAALG--IPA 79

Query: 61 EEL 63
            L
Sbjct: 80 HIL 82


>UniRef50_Q4K5P6 Proteic killer suppressor protein n=9 Tax=Proteobacteria
          RepID=Q4K5P6_PSEF5
          Length = 96

 Score = 40.7 bits (94), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE 57
            + +AR +G + P +++ + G   + AE    +ERA  G+
Sbjct: 24 SVTELARHIGYARPHLSKVLNGHAPIRAELAVKLERAGIGK 64


>UniRef50_C9Z9U9 Putative DNA-binding protein n=1 Tax=Streptomyces scabiei 87.22
          RepID=C9Z9U9_STRSW
          Length = 381

 Score = 40.7 bits (94), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3  KENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
              + K+    +G  Q+ +AR  G+S   +NQ ++G   L  E    +ERAT 
Sbjct: 18 PPGETLKEQLEALGIPQADLARRTGLSTKHINQIVQGTAVLTPETALLLERATG 71


>UniRef50_Q136G0 Transcriptional regulators n=3 Tax=Rhodopseudomonas palustris
          RepID=Q136G0_RHOPS
          Length = 119

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 13/98 (13%)

Query: 1  MKKENYSFKQACAVVG--GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
          M        +A  + G   Q A+A  +GV+  ++ +W    R +  +    + R     V
Sbjct: 1  MSNRGERMVEAMQLRGMTKQHALAFAMGVNESTITRWKN-NRPMSIDHAVLLCRTLD--V 57

Query: 59 LCEELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFD 96
                  +DW  L            +Q     +SSF 
Sbjct: 58 S-------LDW-LLTGVGQIDAAKPCRQPTPEGESSFL 87


>UniRef50_A8ZP63 Putative uncharacterized protein n=1 Tax=Acaryochloris marina
          MBIC11017 RepID=A8ZP63_ACAM1
          Length = 86

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVR--QLPAERCPAIERATRGEVLCEELRPDIDWS 70
           Q+ +A  LGV P S+  W  G     L   +   +       V  EEL   + W 
Sbjct: 29 SQTQLANELGVKPQSIGNWENGRSIPTLNPCQVKKLCEMLN--VTLEELCNAVHWE 82


>UniRef50_B4VL76 Helix-turn-helix domain protein n=8 Tax=Cyanobacteria
          RepID=B4VL76_9CYAN
          Length = 81

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1  MKKENYSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
          M K   + +Q     G  Q+ +A  LGV    + +W    R   AE    I +A
Sbjct: 1  MGKAGQALRQTLDTYGISQNKLAVTLGVDRSMIFKWYHEKRDPTAETVVQIAQA 54


>UniRef50_Q5FN49 Putative uncharacterized protein n=1 Tax=Gluconobacter oxydans
          RepID=Q5FN49_GLUOX
          Length = 72

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELR 64
                A  + GGQ A+AR L +S   ++Q +   R     R         G V+ E +R
Sbjct: 10 QSIVSDAVELAGGQHALARELRISQSDISQAVNNGRTDSRNRVLNA----LGYVVVETIR 65

Query: 65 P 65
          P
Sbjct: 66 P 66


>UniRef50_Q1CP28 Transcriptional regulator, Cro/CI family n=8 Tax=Bacilli
          RepID=Q1CP28_STRPF
          Length = 70

 Score = 40.7 bits (94), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIE 51
           Q  +A+ LGV+  S++ W K   ++  E   ++ 
Sbjct: 15 SQRELAKELGVTQTSISNWEKDQTKISGEYLISLA 49


>UniRef50_C7N3C8 Helix-turn-helix protein n=2 Tax=Slackia heliotrinireducens DSM
          20476 RepID=C7N3C8_SLAHD
          Length = 71

 Score = 40.4 bits (93), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
           QS +AR +G +P S+++  +G       R   I  A   E    EL  D+
Sbjct: 14 SQSELARRIGANPVSISRIERGKEPPYPLRSQRIADALGWEGDPAELFEDV 64


>UniRef50_D0FW95 Putative prophage regulatory ptotein n=2 Tax=Erwinia pyrifoliae
           RepID=D0FW95_ERWPY
          Length = 133

 Score = 40.4 bits (93), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 17  GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
            QS +A  L VS  +V  W  G R++     P + +     V  EEL        LR+  
Sbjct: 40  TQSELADKLNVSQQTVQAWEAGRRRIKVSSLPFVAQI--FSVPLEELFGGSPEKVLRKRG 97

Query: 77  CCSQNMSVKQLNDS 90
             ++   + +  D 
Sbjct: 98  PTAKWQQLIEEVDD 111


>UniRef50_A5CEV6 Putative transcriptional regulator n=2 Tax=Orientia tsutsugamushi
          RepID=A5CEV6_ORITB
          Length = 79

 Score = 40.4 bits (93), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 1  MKKENYSFKQACAVVG------------GQSAMARLLGVSPPSVNQWIKGVRQLPAERCP 48
          M K +    +A   +G             ++ +A  +GV+   ++++ KG+ ++   R  
Sbjct: 1  MAKHHEYIDRANRFIGNRIYMVRLEQKLSRNNLAASIGVTHQQLHKYEKGINRISIGRLM 60

Query: 49 AIERATRGEV 58
           I +A    V
Sbjct: 61 LIAKALNKNV 70


>UniRef50_D1Q0N7 Helix-turn-helix domain protein n=4 Tax=Prevotella
           RepID=D1Q0N7_9BACT
          Length = 114

 Score = 40.4 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 17  GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
            Q+ +A+ +G S   V++ ++G   L  E    IE A
Sbjct: 65  TQTELAQRMGCSQQYVSKILRGKENLSIETLCKIEDA 101


>UniRef50_D1DBX2 Transcriptional regulator n=3 Tax=Neisseria gonorrhoeae
          RepID=D1DBX2_NEIGO
          Length = 223

 Score = 40.4 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 11 ACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
          A    G Q+  +R +  +P  +NQW+ G R +       IE A  
Sbjct: 3  ADRFNGNQAEFSRAINKAPAQINQWLNGYRNIGDGVAAQIEIALG 47


>UniRef50_B2HL42 Plasmid maintenance system antidote protein n=1 Tax=Mycobacterium
          marinum M RepID=B2HL42_MYCMM
          Length = 364

 Score = 40.4 bits (93), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           Q  +A+ LGVSP  +NQ +KGV  + AE    +E+   
Sbjct: 33 TQMELAQRLGVSPKHINQVVKGVASISAELALGLEKVFG 71


>UniRef50_A4JWA5 Putative uncharacterized protein n=1 Tax=Burkholderia
          vietnamiensis G4 RepID=A4JWA5_BURVG
          Length = 60

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLP 43
           Q+  AR LGV P +V++W+ G  + P
Sbjct: 16 SQAEFARRLGVDPTTVSRWVSGRSKFP 42


>UniRef50_P06965 Repressor protein of division inhibition gene dicB n=45
          Tax=Enterobacteriaceae RepID=DICC_ECOLI
          Length = 76

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 10 QACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEV 58
           A    G ++ +A+  G+   S+  W      +P  R   ++ A+ GE+
Sbjct: 5  DALLYFGSKTKLAQAAGIRLASLYSW--KGDLVPEGRAMRLQEASGGEL 51


>UniRef50_A8T0N7 Putative uncharacterized protein n=1 Tax=Vibrio sp. AND4
          RepID=A8T0N7_9VIBR
          Length = 64

 Score = 40.4 bits (93), Expect = 0.019,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 21/49 (42%)

Query: 19 SAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          + MA  L  S   +   I G +   A     +   T GEV   +LRPDI
Sbjct: 15 AEMAVKLKTSTEYLRLVITGHKVPGAALAKNLHDLTHGEVDKHKLRPDI 63


>UniRef50_Q03N54 Transcriptional regulator, xre family n=15 Tax=Lactobacillus
          RepID=Q03N54_LACBA
          Length = 111

 Score = 40.4 bits (93), Expect = 0.020,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           Q+ +A  LGVS  +++  +K  R +       IE    
Sbjct: 30 TQTDLAARLGVSQKNISDILKRKRFINELLALRIETVMG 68


>UniRef50_C7MVX6 Helix-turn-helix protein n=1 Tax=Saccharomonospora viridis DSM
          43017 RepID=C7MVX6_SACVD
          Length = 281

 Score = 40.0 bits (92), Expect = 0.023,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 2/58 (3%)

Query: 8  FKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVR-QLPAERCPAIERATRGEVLCEEL 63
           ++A    G      A +L  S  ++++W  G R   P +    + +A    V  ++L
Sbjct: 15 LRKAREAAGYSVRQFAAMLDTSHATISRWETGQRTPTPEDVAAYLAKAGVSAVTRQQL 72


>UniRef50_A8ZLR5 Plasmid maintenance system antidote system, putative n=2
          Tax=Bacteria RepID=A8ZLR5_ACAM1
          Length = 104

 Score = 40.0 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 7/39 (17%), Positives = 18/39 (46%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
              +A+ LGVS  ++++ + G   +  +    +E+   
Sbjct: 24 SARQLAKALGVSHSAISRLVSGQAAVTPDMAIRLEKGVG 62


>UniRef50_A7MHM9 Putative uncharacterized protein n=3 Tax=Enterobacteriaceae
          RepID=A7MHM9_ENTS8
          Length = 99

 Score = 40.0 bits (92), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 6  YSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
          Y+ ++A +V   Q+ MAR +G++ PSV    +   ++          A  G V  +   P
Sbjct: 33 YALREALSV--SQTEMARQMGIAQPSVAAIEQRGNEMKISTLKRYVEALGGTVRLDVELP 90

Query: 66 D 66
          D
Sbjct: 91 D 91


>UniRef50_C8T869 Putative uncharacterized protein n=1 Tax=Klebsiella pneumoniae
          subsp. rhinoscleromatis ATCC 13884 RepID=C8T869_KLEPR
          Length = 77

 Score = 40.0 bits (92), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 1  MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLC 60
          M  +NY           Q   A+L+G +   V++   G   L A        AT  +V  
Sbjct: 1  MDLKNYLKTSGVR----QQDFAQLVGETQGYVSRVASGKCMLGAATALKWAAATGYQVTP 56

Query: 61 EELRPDI 67
           +L P+I
Sbjct: 57 HDLLPNI 63


>UniRef50_Q5FNI8 Putative phage protein n=1 Tax=Gluconobacter oxydans
          RepID=Q5FNI8_GLUOX
          Length = 76

 Score = 40.0 bits (92), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 9  KQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDI 67
          K    + GG   + + +     +V  W    R++P      I +     V    +RPD+
Sbjct: 13 KDIIRMAGGPLKVGQAVHRHHSTVCGW----RKIPPCHAITIAQMAG--VSVHVIRPDV 65


>UniRef50_B4RFH0 Transcriptional regulator, XRE family n=1 Tax=Phenylobacterium
          zucineum HLK1 RepID=B4RFH0_PHEZH
          Length = 136

 Score = 39.6 bits (91), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVL 59
           Q A+A   GVS   + ++  G  ++   R   I RA R  V 
Sbjct: 30 SQEALAEQCGVSFQQIQKYENGANRISFSRLVQIARALRCRVT 72


>UniRef50_B9BHR2 Conserved domain protein n=2 Tax=Burkholderia multivorans
          RepID=B9BHR2_9BURK
          Length = 68

 Score = 39.6 bits (91), Expect = 0.031,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 5  NYSFKQACAVVGGQSAMARLLGVSPPSVNQW 35
          N + +QA  + G  +A+AR LG++  +V+QW
Sbjct: 2  NLTKQQATDIFGSGAALARALGITKGAVSQW 32


>UniRef50_UPI0001B4BA50 hypothetical protein ShygA5_38643 n=1 Tax=Streptomyces
           hygroscopicus ATCC 53653 RepID=UPI0001B4BA50
          Length = 102

 Score = 39.6 bits (91), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 4/77 (5%)

Query: 7   SFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRP 65
             K+A    G  Q A+AR LGVS   + Q   G      +   A   A  GE+    LR 
Sbjct: 27  FLKRARRSRGMSQRALARELGVSQARIAQIENGASTPQIDTMAAYITALGGELT---LRA 83

Query: 66  DIDWSYLRRSACCSQNM 82
           D      + +       
Sbjct: 84  DFHDHVTQTTWPEQHPT 100


>UniRef50_C5B1U8 Putative uncharacterized protein n=5 Tax=Alphaproteobacteria
           RepID=C5B1U8_METEA
          Length = 225

 Score = 39.2 bits (90), Expect = 0.036,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 8   FKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPA 49
              A    G Q A A   GVS   ++  + G R  P ER  A
Sbjct: 168 LSAAIREAGSQKAFAHKAGVSAGFLSDVVHGRRD-PGERVLA 208


>UniRef50_C9LCK9 Toxin-antitoxin system, antitoxin component, Xre family n=2
          Tax=Clostridiales RepID=C9LCK9_RUMHA
          Length = 65

 Score = 39.2 bits (90), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 6  YSFKQACAVVG-GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           + ++A    G  QS +A  L V    +++W  G      E    I R   
Sbjct: 5  ENIRKARKAAGVSQSELAERLQVHQKDISRWENGAHAPTIEMFAKICRELN 55


>UniRef50_D0KXR0 Plasmid maintenance system antidote protein, XRE family n=4
          Tax=Gammaproteobacteria RepID=D0KXR0_HALNC
          Length = 96

 Score = 39.2 bits (90), Expect = 0.039,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 8/71 (11%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGEVLCEELRPDIDWSYLRRSA 76
             A+A  LGV+P +V + I G   +  E    + +A          R    W  ++ + 
Sbjct: 24 SVRALAESLGVAPSTVTRIINGHSAISPEMALRLAKALG--------RSAESWLAMQHNY 75

Query: 77 CCSQNMSVKQL 87
             Q   +  L
Sbjct: 76 DLWQAKQITDL 86


>UniRef50_C6P0T2 Plasmid maintenance system antidote protein, XRE family n=1
          Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P0T2_9PROT
          Length = 100

 Score = 39.2 bits (90), Expect = 0.041,   Method: Composition-based stats.
 Identities = 9/39 (23%), Positives = 17/39 (43%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           Q   A  LGVS  +V++ + G R +  +    + +   
Sbjct: 29 TQGEFADRLGVSRRTVSEILHGRRPVTPDMAIRLGKLLG 67


>UniRef50_B3EPS4 Plasmid maintenance system antidote protein, XRE family n=1
           Tax=Chlorobium phaeobacteroides BS1 RepID=B3EPS4_CHLPB
          Length = 157

 Score = 38.8 bits (89), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 17  GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATRGE---VLCEELR 64
            Q  +A ++GV+P  +++ +KG   L  E    +E A       V C E R
Sbjct: 60  SQKDLAEMMGVTPQHISKIVKGRENLTLETIAKLEAALGIALMDVPCYEER 110


>UniRef50_A6NW39 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus
          ATCC 29799 RepID=A6NW39_9BACE
          Length = 210

 Score = 38.8 bits (89), Expect = 0.050,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 15/37 (40%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERA 53
           Q  +   LGVS  +V++W  G  +   E    +   
Sbjct: 17 SQEQLGEALGVSRQAVSKWESGQTKPDLEAVGKMCEL 53


>UniRef50_C5CJM0 Transcriptional regulator, XRE family n=1 Tax=Variovorax
          paradoxus S110 RepID=C5CJM0_VARPS
          Length = 121

 Score = 38.8 bits (89), Expect = 0.058,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAE 45
           Q  +A  +GVS  +V  W  G   + AE
Sbjct: 16 SQGDVASEIGVSQQTVANWETGRSPMDAE 44


>UniRef50_D2MJ41 Plasmid maintenance system antidote protein, XRE family n=1
          Tax=Candidatus Poribacteria sp. WGA-A3
          RepID=D2MJ41_9BACT
          Length = 87

 Score = 38.8 bits (89), Expect = 0.059,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 17 GQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
           Q+ +A+  G S   +N+ + G R +      A+E A  
Sbjct: 26 NQTRLAKRCGCSTGKINEIVNGRRGISPAFAIALESALG 64


>UniRef50_Q9PG03 Putative uncharacterized protein n=1 Tax=Xylella fastidiosa
          RepID=Q9PG03_XYLFA
          Length = 176

 Score = 38.0 bits (87), Expect = 0.085,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 4  ENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKG 38
             +  +A   +G  +A+A+ L  S   VNQWI G
Sbjct: 34 RRENLAKAAEELGSITALAKRLDRSDSQVNQWIHG 68


>UniRef50_A1KC49 Putative uncharacterized protein n=1 Tax=Azoarcus sp. BH72
          RepID=A1KC49_AZOSB
          Length = 114

 Score = 38.0 bits (87), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 12 CAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPAERCPAIERATR 55
                Q A+AR LG+S   VN+ ++G R +  +    + R   
Sbjct: 48 IPAAISQDALARALGISRRRVNELVRGRRAISPDTAVRLGRFFG 91


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.305    0.141    0.406 

Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,810,726
Number of Sequences: 3077464
Number of extensions: 18689336
Number of successful extensions: 74576
Number of sequences better than 1.0e-01: 214
Number of HSP's better than  0.1 without gapping: 245
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 74216
Number of HSP's gapped (non-prelim): 363
length of query: 98
length of database: 1,040,396,356
effective HSP length: 67
effective length of query: 31
effective length of database: 834,206,268
effective search space: 25860394308
effective search space used: 25860394308
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.9 bits)
S2: 87 (38.0 bits)
