BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (113 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 228 7e-59 UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=S... 141 8e-33 UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 112 4e-24 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 90 2e-17 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 48 1e-04 UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 47 2e-04 UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 43 0.002 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 41 0.013 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 40 0.021 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 40 0.031 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA Sbjct: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 >UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=Shigella boydii CDC 3083-94 RepID=B2U561_SHIB3 Length = 75 Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 69/70 (98%), Positives = 70/70 (100%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLV 70 +FFTHICQLV Sbjct: 61 NFFTHICQLV 70 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 112 bits (280), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 53/113 (46%), Positives = 76/113 (67%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MK+S ++ LL G L Y++G W +CPLLSGKGYFLGV +T F + YLR G++D Sbjct: 1 MKSSTFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVYLREVMRGEID 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 + F +C+L+AL+ GLL +GV+NAP+ E V+YP+A V L G +R+ R+ Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRTE 113 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 47/105 (44%), Positives = 71/105 (67%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 M T + +A+++ G+LVYL+G+W +CPL SGKGYFLGVL+ F A+ RA + + D Sbjct: 1 MNTKRNIARVMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 D F +C+LV L+++GLL +G P + +E +Y A+FVCL+G Sbjct: 61 DGFIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYG 105 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 11 LFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFTHICQLV 70 + VVGA+VYLVGLW C LS KGYF ++ F +R E G + C+ + Sbjct: 16 MLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVMCGF--PVLIRQEHTG--NGRLLSRCKSL 71 Query: 71 ALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 L+ IG++ +GV N + ++ +A V ++G Sbjct: 72 LLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 4/100 (4%) Query: 12 FVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRA--EKLG--QLDDFFTHIC 67 + G YL+GLW + L+ KGY+ VL F + ++ ++L + + + Sbjct: 230 LLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKSVRDRLEGVPVTGLYYGLA 289 Query: 68 QLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQM 107 ++TI LL IG+ NA + E Y ++F + LFG + Sbjct: 290 WASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSV 329 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 6/101 (5%) Query: 10 LLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDD-----FFT 64 L V+GA+ +++GLW + L KG++L +L+ F + L+ +L+D + Sbjct: 18 LAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVS-LQKTLRDKLEDIPVTAIYV 76 Query: 65 HICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 +C I IGLL + NA ++ E Y ++F + LFG Sbjct: 77 ALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFG 117 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 4/96 (4%) Query: 14 VGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQ----LDDFFTHICQL 69 +G YL+GLW + +L+ KGY+ + + A F + + + Q F +C Sbjct: 56 IGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQKTVRDKQEGLPATKVFVGMCWA 115 Query: 70 VALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 +I LL IG+ NA + E Y +AF + LF Sbjct: 116 AFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFS 151 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 12 FVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYA---YLRAEKLG-QLDDFFTHIC 67 FV+G+ YL GLW S L+ KGY+ +L+ F + +R + G + + C Sbjct: 22 FVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISLQKTIRDKHEGINVTSMYMMSC 81 Query: 68 QLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 ++ + + L+ IG+ NA + E + +A+ + LF Sbjct: 82 RVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFS 119 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 129 2e-29 UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 127 1e-28 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 116 3e-25 UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 110 1e-23 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 92 5e-18 UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=S... 84 2e-15 Sequences not found previously or not previously below threshold: UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 94 1e-18 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 80 3e-14 UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE 78 7e-14 UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillu... 75 6e-13 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 73 3e-12 UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1... 73 4e-12 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 69 5e-11 UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlant... 61 1e-08 UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cell... 60 2e-08 UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter ... 58 1e-07 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 129 bits (325), Expect = 2e-29, Method: Composition-based stats. Identities = 53/113 (46%), Positives = 76/113 (67%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MK+S ++ LL G L Y++G W +CPLLSGKGYFLGV +T F + YLR G++D Sbjct: 1 MKSSTFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVYLREVMRGEID 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 + F +C+L+AL+ GLL +GV+NAP+ E V+YP+A V L G +R+ R+ Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRTE 113 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA Sbjct: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 47/108 (43%), Positives = 71/108 (65%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 M T + +A+++ G+LVYL+G+W +CPL SGKGYFLGVL+ F A+ RA + + D Sbjct: 1 MNTKRNIARVMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMR 108 D F +C+LV L+++GLL +G P + +E +Y A+FVCL+G Sbjct: 61 DGFIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASA 108 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 110 bits (275), Expect = 1e-23, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 93.9 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 + + G YL+GLW + L+ KGY+ VL F + +R G + + Sbjct: 226 SWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKSVRDRLEGVPVTGLY 285 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + ++TI LL IG+ NA + E Y ++F + LFG + + ++ Sbjct: 286 YGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAVQKN 334 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 92.0 bits (227), Expect = 5e-18, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 4/95 (4%) Query: 11 LFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDFFTHICQLV 70 + VVGA+VYLVGLW C LS KGYF ++ F +R E G + C+ + Sbjct: 16 MLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVMCGF--PVLIRQEHTG--NGRLLSRCKSL 71 Query: 71 ALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 L+ IG++ +GV N + ++ +A V ++G Sbjct: 72 LLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 >UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=Shigella boydii CDC 3083-94 RepID=B2U561_SHIB3 Length = 75 Score = 83.9 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 69/71 (97%), Positives = 70/71 (98%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLVA 71 +FFTHICQLV Sbjct: 61 NFFTHICQLVM 71 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 79.6 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 +G YL+GLW + +L+ KGY+ + + A F + +R ++ G F Sbjct: 50 TWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQKTVRDKQEGLPATKVF 109 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 +C +I LL IG+ NA + E Y +AF + LF + + ++ Sbjct: 110 VGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVTVQKN 158 >UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE Length = 187 Score = 78.5 bits (192), Expect = 7e-14, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 + ++G + ++ GLW + L+ KG++ VL+ + + +R + G + + Sbjct: 34 SWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKTVRDKLEGVAVTGIY 93 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 I + +I + LL G+ NA + E Y +AF + LFG + + ++ Sbjct: 94 YGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQKN 142 >UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKE1_9BACI Length = 171 Score = 75.0 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 5/113 (4%) Query: 5 KTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD---- 60 K + + G YL+GL+ + L+ KGY+ VL+ + + +A + + D Sbjct: 48 KGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQKAVRDKEEDIPVS 107 Query: 61 DFFTHICQLVALITIGLLFIGVLNA-PINTYEMVIYPIAFFVCLFGQMRLFRS 112 + I +++I L+ IG+ NA I E Y ++F + LF + + ++ Sbjct: 108 GIYYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAITIQKN 160 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 73.1 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 + FV+G+ YL GLW S L+ KGY+ +L+ F + +R + G + + Sbjct: 18 SWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISLQKTIRDKHEGINVTSMY 77 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 C++ + + L+ IG+ NA + E + +A+ + LF + + ++ Sbjct: 78 MMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSVVTIQKN 126 >UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1HSE2_LYSSC Length = 169 Score = 72.7 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 5 KTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLD 60 K + +VG Y +GL+ + L+ GY+L VL+ + + +R + G + Sbjct: 46 KGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQKSVRDKDEGIPVT 105 Query: 61 DFFTHICQLVALITIGLLFIGVLNA-PINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + I + +++I L+ IG+ NA I E Y ++F + LF + + ++ Sbjct: 106 NMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASITVQKN 158 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 68.8 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 + L V+GA+ +++GLW + L KG++L +L+ F + LR + + + Sbjct: 16 SWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQKTLRDKLEDIPVTAIY 75 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 +C I IGLL + NA ++ E Y ++F + LFG ++ Sbjct: 76 VALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFGVTATQKN 124 >UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PS0_PSEA6 Length = 147 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 2 KTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG- 57 K+ + ++G + Y +GL+ + L+ KGY+L +++ F + +R + G Sbjct: 8 KSYTLASLAALLIGTVAYSIGLFNAQMALNEKGYYLIIMLYGLFSMVSLQKTIRDKAEGI 67 Query: 58 QLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + + + I LL IG+ NA + E Y +A+ + LF + + ++ Sbjct: 68 KTSSMYQTLSWASSGFAIALLAIGLYNAELALSEKGFYAMAYVLSLFAAVTVQKN 122 >UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RFL4_9CELL Length = 157 Score = 60.0 bits (144), Expect = 2e-08, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 8 AKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFF 63 + + V+ + VGLW + LLS KG++ +L+ + A +R G + F Sbjct: 18 SWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKSVRDRAEGIPVTGIF 77 Query: 64 THICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + L+++ L+ IG+ N+ + E Y + + + LF + + ++ Sbjct: 78 LGLSWSMVLVSLLLVAIGLANSTLTLSEKGFYGLGYTMALFAVIAVQKN 126 >UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB60_9BURK Length = 174 Score = 57.7 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 24 WISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFFTHICQLVALITIGLLF 79 W + L+ KGY+ +L F + +R + G + + IC L +++ LL Sbjct: 65 WNAEMQLNEKGYYFTLLAFGLFAAVSLQKCVRDKLEGIPVSGAYYGICYLAVGLSLLLLG 124 Query: 80 IGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 G+ NA + E Y ++F + L+ + + ++ Sbjct: 125 TGLWNATLLLSEKGYYAMSFVLALYSAVTVQKN 157 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria... 156 2e-37 UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1... 135 5e-31 UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillu... 133 2e-30 UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinom... 131 8e-30 UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE 130 2e-29 UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacte... 125 4e-28 UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter ro... 121 7e-27 UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Ta... 120 2e-26 UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio ... 116 2e-25 UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacte... 115 7e-25 UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlant... 115 7e-25 UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiell... 105 3e-22 UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cell... 105 4e-22 UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter ... 96 3e-19 UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterob... 88 7e-17 UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=S... 76 3e-13 Sequences not found previously or not previously below threshold: UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Breviba... 41 0.010 UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Ba... 40 0.023 CONVERGED! >UniRef50_Q3JFC6 YiaA/B two helix domain family n=99 Tax=Bacteria RepID=Q3JFC6_BURP1 Length = 356 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 + + G YL+GLW + L+ KGY+ VL F + +R G + Sbjct: 225 ASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKSVRDRLEGVPVTGL 284 Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + ++TI LL IG+ NA + E Y ++F + LFG + + ++ Sbjct: 285 YYGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAVQKN 334 Score = 48.4 bits (114), Expect = 7e-05, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%) Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F L + +G+ NA + E Y LF + L +S Sbjct: 222 FVAASWAALLAGVCAYLLGLWNAGMQLNEKGYYFTVLAYGLFAAVSLQKS 271 Score = 48.0 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 26/59 (44%) Query: 4 SKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDDF 62 +A ++ + ++GL+ + LLS KG++ A FG+ A + + + Sbjct: 285 YYGLAWASVILTIALLVIGLFNATLLLSEKGFYAMSFALALFGSVAVQKNTRDLKAAGR 343 >UniRef50_B1HSE2 Inner membrane protein n=9 Tax=Bacteria RepID=B1HSE2_LYSSC Length = 169 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 3 TSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-Q 58 K + +VG Y +GL+ + L+ GY+L VL+ + + +R + G Sbjct: 44 AFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQKSVRDKDEGIP 103 Query: 59 LDDFFTHICQLVALITIGLLFIGVLNAP-INTYEMVIYPIAFFVCLFGQMRLFRS 112 + + + I + +++I L+ IG+ NA I E Y ++F + LF + + ++ Sbjct: 104 VTNMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASITVQKN 158 Score = 53.8 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%) Query: 53 AEKLGQLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + G+ F L+ + FIG+ NA + E Y + L+ + L +S Sbjct: 35 ERQEGEPTAAFKGASWAALLVGVTAYFIGLFNATMPLNETGYYLAVLVLGLYSAVSLQKS 94 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 2 KTSKTVAKLLFVVGALVYLVGLWISC-PLLSGKGYFLGVLMTATFGNYAYLRAEKLGQ 58 ++ + +V L+ +GL+ + +LS KG++ + + F + + + Q Sbjct: 106 NMYYGISWIALIVSILLMAIGLYNAESIVLSEKGFYGMSFVLSLFASITVQKNIRDTQ 163 >UniRef50_A6CKE1 Putative uncharacterized protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CKE1_9BACI Length = 171 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 3 TSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-Q 58 K + + G YL+GL+ + L+ KGY+ VL+ + + +R ++ Sbjct: 46 AFKGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQKAVRDKEEDIP 105 Query: 59 LDDFFTHICQLVALITIGLLFIGVLNA-PINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + I +++I L+ IG+ NA I E Y ++F + LF + + ++ Sbjct: 106 VSGIYYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAITIQKN 160 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 19/59 (32%) Query: 53 AEKLGQLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFR 111 K G+ F + + IG+ NA + E Y L+ + L + Sbjct: 37 ERKEGEPTAAFKGASWAALIAGVSAYLIGLFNAGMELNEKGYYFAVLVFGLYAAVSLQK 95 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 4 SKTVAKLLFVVGALVYLVGLWISC-PLLSGKGYFLGVLMTATFGNYAYLRAEKLGQL 59 ++ +V + +GL+ + +LS KG++ + + F + + QL Sbjct: 110 YYGISWFAVIVSISLMAIGLYNAGSIILSEKGFYGMSFVLSLFAAITIQKNIRDTQL 166 >UniRef50_A3YER8 Putative uncharacterized protein n=1 Tax=Marinomonas sp. MED121 RepID=A3YER8_9GAMM Length = 188 Score = 131 bits (329), Expect = 8e-30, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 3 TSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-Q 58 + +G YL+GLW + +L+ KGY+ + + A F + +R ++ G Sbjct: 45 AYLSATWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQKTVRDKQEGLP 104 Query: 59 LDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F +C +I LL IG+ NA + E Y +AF + LF + + ++ Sbjct: 105 ATKVFVGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVTVQKN 158 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%) Query: 60 DDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + I + +G+ NA I E Y F + LF + L ++ Sbjct: 43 TPAYLSATWAALAIGVCGYLLGLWNADIMLNEKGYYFAIFILALFSSVTLQKT 95 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%) Query: 2 KTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKL 56 K + F + +GL+ + LS KG+++ + + F + + Sbjct: 107 KVFVGMCWAAFFSSIALLGIGLFNAEMALSEKGFYVMAFILSLFSIVTVQKNVRD 161 >UniRef50_D0J5W3 YiaAB two helix n=3 Tax=Bacteria RepID=D0J5W3_COMTE Length = 187 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 6 TVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDD 61 + ++G + ++ GLW + L+ KG++ VL+ + + +R + G + Sbjct: 32 GASWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKTVRDKLEGVAVTG 91 Query: 62 FFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + I + +I + LL G+ NA + E Y +AF + LFG + + ++ Sbjct: 92 IYYGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQKN 142 Score = 47.6 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 18/50 (36%) Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F L+ + G+ NA + E Y + L+ + L ++ Sbjct: 30 FVGASWAALLLGVVAFMAGLWNAAMQLNEKGFYFAVLVLGLYSAISLQKT 79 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%) Query: 4 SKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKL 56 ++ + ++ L+ GL+ + LS KG++ A FG A + + Sbjct: 93 YYGISWVALIIAVLLLGTGLFNATLQLSEKGFYAMAFALALFGAIAVQKNTRD 145 >UniRef50_P0ADJ8 Inner membrane protein yiaA n=60 Tax=Enterobacteriaceae RepID=YIAA_ECOLI Length = 145 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%) Query: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 V+ + V G + YL+GLW + L+ KGY+ VL+ F +Y +R + G Sbjct: 15 VSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKTVRDKYEGIPTTSI 74 Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + C V +I++ LL +G+ NA + E Y +AFF+ LFG + + ++ Sbjct: 75 YYMTCLTVFIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKN 124 Score = 39.5 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 9/50 (18%), Positives = 19/50 (38%) Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F+ + + + I +G+ NA + E Y + LF ++ Sbjct: 12 FSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAASYQKT 61 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 25/49 (51%) Query: 12 FVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 F++ + +VGLW + LLS KG++ + FG A + + ++ Sbjct: 83 FIISVALLMVGLWNATLLLSEKGFYGLAFFLSLFGAVAVQKNIRDAGIN 131 >UniRef50_D2TJU2 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJU2_CITRO Length = 120 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 53/113 (46%), Positives = 76/113 (67%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MK+S ++ LL G L Y++G W +CPLLSGKGYFLGV +T F + YLR G++D Sbjct: 1 MKSSTFISWLLLFSGTLTYVIGFWRACPLLSGKGYFLGVFITVWFVAWVYLREVMRGEID 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 + F +C+L+AL+ GLL +GV+NAP+ E V+YP+A V L G +R+ R+ Sbjct: 61 ERFISVCKLMALVMTGLLLVGVINAPLTPGERVLYPVALCVSLLGLVRVIRTE 113 >UniRef50_D0SI16 YiaAB two helix domain-containing protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SI16_ACIJU Length = 152 Score = 120 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 6 TVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDD 61 + L V+GA+ +++GLW + L KG++L +L+ F + LR + + Sbjct: 14 GASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQKTLRDKLEDIPVTA 73 Query: 62 FFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + +C I IGLL + NA ++ E Y ++F + LFG ++ Sbjct: 74 IYVALCWTSVGICIGLLLFSLSNATLSLSEKGYYIMSFLLSLFGVTATQKN 124 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F L +I IG+ NA + +E Y + LF + L ++ Sbjct: 12 FIGASWLAVVIGAVGFMIGLWNASMPLHEKGFYLVILLYGLFSAVSLQKT 61 >UniRef50_Q5E8X9 Conserved inner membrane protein n=1 Tax=Vibrio fischeri ES114 RepID=Q5E8X9_VIBF1 Length = 148 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 54/110 (49%), Gaps = 4/110 (3%) Query: 7 VAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDF 62 + FV+G+ YL GLW S L+ KGY+ +L+ F + +R + G + Sbjct: 17 ASWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISLQKTIRDKHEGINVTSM 76 Query: 63 FTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + C++ + + L+ IG+ NA + E + +A+ + LF + + ++ Sbjct: 77 YMMSCRVALISALVLMAIGLRNAELLLSEKGFFAMAYTLSLFSVVTIQKN 126 Score = 39.5 bits (91), Expect = 0.037, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 17/55 (30%) Query: 58 QLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 Q F +I G+ + + E Y + LF + L ++ Sbjct: 9 QPTSAFIMASWGAFVIGSSAYLFGLWKSTMELNEKGYYFSLLLLGLFAAISLQKT 63 >UniRef50_P11286 Inner membrane protein yiaB n=59 Tax=Enterobacteriaceae RepID=YIAB_ECOLI Length = 113 Score = 115 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 113/113 (100%), Positives = 113/113 (100%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA Sbjct: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRSA 113 >UniRef50_Q15PS0 YiaAB two helix n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PS0_PSEA6 Length = 147 Score = 115 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 2 KTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG- 57 K+ + ++G + Y +GL+ + L+ KGY+L +++ F + +R + G Sbjct: 8 KSYTLASLAALLIGTVAYSIGLFNAQMALNEKGYYLIIMLYGLFSMVSLQKTIRDKAEGI 67 Query: 58 QLDDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 + + + + I LL IG+ NA + E Y +A+ + LF + + ++ Sbjct: 68 KTSSMYQTLSWASSGFAIALLAIGLYNAELALSEKGFYAMAYVLSLFAAVTVQKN 122 >UniRef50_D0YEB1 YiaAB two helix domain protein n=5 Tax=Klebsiella RepID=D0YEB1_KLEVA Length = 123 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 47/109 (43%), Positives = 71/109 (65%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 M T + +A+++ G+LVYL+G+W +CPL SGKGYFLGVL+ F A+ RA + + D Sbjct: 1 MNTKRNIARVMMAAGSLVYLLGIWRTCPLFSGKGYFLGVLVMGMFAVLAHQRASQWQEQD 60 Query: 61 DFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRL 109 D F +C+LV L+++GLL +G P + +E +Y A+FVCL+G Sbjct: 61 DGFIALCRLVLLLSVGLLLVGAWYVPADWHEKAVYIAAWFVCLYGASAT 109 >UniRef50_C1RFL4 Predicted membrane protein, COG4682 n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RFL4_9CELL Length = 157 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 6 TVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDD 61 + + V+ + VGLW + LLS KG++ +L+ + A +R G + Sbjct: 16 GASWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKSVRDRAEGIPVTG 75 Query: 62 FFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F + + L+++ L+ IG+ N+ + E Y + + + LF + + ++ Sbjct: 76 IFLGLSWSMVLVSLLLVAIGLANSTLTLSEKGFYGLGYTMALFAVIAVQKN 126 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 20/53 (37%) Query: 60 DDFFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 F + +I I +G+ NA + E Y + L+ + L +S Sbjct: 11 TAAFVGASWVALVIAITAFAVGLWNADMLLSEKGFYGTLLLLGLYSAIALQKS 63 >UniRef50_C9YB60 Inner membrane protein yiaA n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB60_9BURK Length = 174 Score = 96.2 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Query: 24 WISCPLLSGKGYFLGVLMTATFGNYAY---LRAEKLG-QLDDFFTHICQLVALITIGLLF 79 W + L+ KGY+ +L F + +R + G + + IC L +++ LL Sbjct: 65 WNAEMQLNEKGYYFTLLAFGLFAAVSLQKCVRDKLEGIPVSGAYYGICYLAVGLSLLLLG 124 Query: 80 IGVLNAPINTYEMVIYPIAFFVCLFGQMRLFRS 112 G+ NA + E Y ++F + L+ + + ++ Sbjct: 125 TGLWNATLLLSEKGYYAMSFVLALYSAVTVQKN 157 >UniRef50_B5FLD3 YiaA/B two helix domain protein n=31 Tax=Enterobacteriaceae RepID=B5FLD3_SALDC Length = 117 Score = 88.5 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 4/104 (3%) Query: 2 KTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDD 61 + + + VVGA+VYLVGLW C LS KGYF ++ F +R E G + Sbjct: 7 RRKRIFGLGMLVVGAVVYLVGLWPGCHTLSEKGYFFAAIVMCGF--PVLIRQEHTG--NG 62 Query: 62 FFTHICQLVALITIGLLFIGVLNAPINTYEMVIYPIAFFVCLFG 105 C+ + L+ IG++ +GV N + ++ +A V ++G Sbjct: 63 RLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGVSIYG 106 >UniRef50_B2U561 YiaA/B two helix domain family protein n=1 Tax=Shigella boydii CDC 3083-94 RepID=B2U561_SHIB3 Length = 75 Score = 76.1 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 69/71 (97%), Positives = 70/71 (98%) Query: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD Sbjct: 1 MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLD 60 Query: 61 DFFTHICQLVA 71 +FFTHICQLV Sbjct: 61 NFFTHICQLVM 71 >UniRef50_C0Z6A4 Putative uncharacterized protein n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0Z6A4_BREBN Length = 95 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%) Query: 53 AEKLGQLDDFFTHICQLVALITIGLLFIGVLNAP-INTYEMVIYPIAFFVCLFGQMRLFR 111 + + FT + + L IG+ NA + +E Y + G + + Sbjct: 4 QKHRMRNTGAFTFLAYFTLGAGVLLFSIGLYNATGLQLHEKGYYIACMLLVAVGSILTQK 63 >UniRef50_O32082 Uncharacterized membrane protein yubF n=3 Tax=Bacillus RepID=YUBF_BACSU Length = 87 Score = 39.9 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 3 TSKTVAKLLFVVGALVYLVGLWISC-PLLSGKGYFLGVLMTATFGNYAYLRAEKLGQLDD 61 +A F G ++ +GL+ + L+ KGY++ V++ G + + D+ Sbjct: 11 AFTVLAYFTFFAGVFLFSIGLYNADNLELNEKGYYIAVMILVAVGAILTQKVTRDNAEDN 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.320 0.146 0.407 Lambda K H 0.267 0.0446 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 651,292,702 Number of Sequences: 3077464 Number of extensions: 23110355 Number of successful extensions: 146097 Number of sequences better than 1.0e-01: 24 Number of HSP's better than 0.1 without gapping: 39 Number of HSP's successfully gapped in prelim test: 16 Number of HSP's that attempted gapping in prelim test: 145948 Number of HSP's gapped (non-prelim): 103 length of query: 113 length of database: 1,040,396,356 effective HSP length: 80 effective length of query: 33 effective length of database: 794,199,236 effective search space: 26208574788 effective search space used: 26208574788 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.8 bits) S2: 87 (38.0 bits)