Phyre 2 alignment of P76096 with c3muwU_

Return to main results | Retrieve Phyre Job Id

Job Description | P76096
Confidence | 15.69% | Date | Thu Jan 5 12:18:50 GMT 2012
Rank | 2 | Aligned Residues | 40
% Identity | 30% | Template | c3muwU_
PDB info | PDB header:virus | Chain: U: PDB Molecule:structural polyprotein; | PDBTitle: pseudo-atomic structure of the e2-e1 protein shell in sindbis virus
Resolution | 9.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | P | P | S | G | K | E | K | G | Y | E | A | Q | P | S | G | G | V | S | A | H | Y | L | H | Y | D | S | D | I | H | T | P | D | P | T | N | A | L | R | T | A | V | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | K | F | V | G | R | E | K | . | Y | D | L | P | P | V | H | G | K | K | I | P | C | T | V | Y | . | . | D | L | H | L | P | F | K | L | I | P | S | T | C | M | V | P
Template Known Secondary structure |  |  |  |  |  | S | S | S |  | . |  | S | S |  |  | S | S |  |  |  |  |  |  |  |  |  | . | . |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 132 | . | . | . | . | . | . | . |  | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . |  |  | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | .

Download: | Text version | FASTA pairwise alignment | 3D Model in PDB format

View in Jmol

|  | Close Jmol

Send structure to FirstGlance for more viewing options

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions