BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (80 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76521 Uncharacterized protein yfdY n=88 Tax=Enterobact... 157 9e-38 UniRef50_B7LL99 Putative uncharacterized protein n=1 Tax=Escheri... 123 1e-27 UniRef50_C1M788 Putative uncharacterized protein n=2 Tax=Citroba... 98 1e-19 >UniRef50_P76521 Uncharacterized protein yfdY n=88 Tax=Enterobacteriaceae RepID=YFDY_ECOLI Length = 80 Score = 157 bits (397), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 80/80 (100%), Positives = 80/80 (100%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF Sbjct: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 Query: 61 MFLAPACGLMIRFMVGYGRR 80 MFLAPACGLMIRFMVGYGRR Sbjct: 61 MFLAPACGLMIRFMVGYGRR 80 >UniRef50_B7LL99 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LL99_ESCF3 Length = 82 Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/80 (75%), Positives = 69/80 (86%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 MI +W FL + I+CVSGYIGQVL SA+SS GM+IL A+IYYFT W+TGGNE+VTGIF Sbjct: 3 MIYIWAFLVVSILCVSGYIGQVLGWASAISSLIGMIILTAMIYYFTSWVTGGNEIVTGIF 62 Query: 61 MFLAPACGLMIRFMVGYGRR 80 +FLAPACGLMIRFMVGYGRR Sbjct: 63 LFLAPACGLMIRFMVGYGRR 82 >UniRef50_C1M788 Putative uncharacterized protein n=2 Tax=Citrobacter RepID=C1M788_9ENTR Length = 80 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 48/80 (60%), Positives = 61/80 (76%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 M+ W FL L I+CVS YI QV+ +++S+F GM IL ALIY FTM LT GNE+VTG+F Sbjct: 1 MLYFWTFLILSILCVSCYIWQVIGAAASISAFLGMAILTALIYVFTMRLTNGNEMVTGLF 60 Query: 61 MFLAPACGLMIRFMVGYGRR 80 +FLAP CGL+IRFMV G++ Sbjct: 61 LFLAPTCGLIIRFMVADGKQ 80 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76521 Uncharacterized protein yfdY n=88 Tax=Enterobact... 91 1e-17 UniRef50_C1M788 Putative uncharacterized protein n=2 Tax=Citroba... 91 1e-17 UniRef50_B7LL99 Putative uncharacterized protein n=1 Tax=Escheri... 91 1e-17 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P76521 Uncharacterized protein yfdY n=88 Tax=Enterobacteriaceae RepID=YFDY_ECOLI Length = 80 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 80/80 (100%), Positives = 80/80 (100%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF Sbjct: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 Query: 61 MFLAPACGLMIRFMVGYGRR 80 MFLAPACGLMIRFMVGYGRR Sbjct: 61 MFLAPACGLMIRFMVGYGRR 80 >UniRef50_C1M788 Putative uncharacterized protein n=2 Tax=Citrobacter RepID=C1M788_9ENTR Length = 80 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 48/80 (60%), Positives = 61/80 (76%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 M+ W FL L I+CVS YI QV+ +++S+F GM IL ALIY FTM LT GNE+VTG+F Sbjct: 1 MLYFWTFLILSILCVSCYIWQVIGAAASISAFLGMAILTALIYVFTMRLTNGNEMVTGLF 60 Query: 61 MFLAPACGLMIRFMVGYGRR 80 +FLAP CGL+IRFMV G++ Sbjct: 61 LFLAPTCGLIIRFMVADGKQ 80 >UniRef50_B7LL99 Putative uncharacterized protein n=1 Tax=Escherichia fergusonii ATCC 35469 RepID=B7LL99_ESCF3 Length = 82 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 60/80 (75%), Positives = 69/80 (86%) Query: 1 MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYYFTMWLTGGNELVTGIF 60 MI +W FL + I+CVSGYIGQVL SA+SS GM+IL A+IYYFT W+TGGNE+VTGIF Sbjct: 3 MIYIWAFLVVSILCVSGYIGQVLGWASAISSLIGMIILTAMIYYFTSWVTGGNEIVTGIF 62 Query: 61 MFLAPACGLMIRFMVGYGRR 80 +FLAPACGLMIRFMVGYGRR Sbjct: 63 LFLAPACGLMIRFMVGYGRR 82 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.334 0.154 0.493 Lambda K H 0.267 0.0475 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 391,524,986 Number of Sequences: 3077464 Number of extensions: 15405255 Number of successful extensions: 101487 Number of sequences better than 1.0e-01: 7 Number of HSP's better than 0.1 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 101477 Number of HSP's gapped (non-prelim): 10 length of query: 80 length of database: 1,040,396,356 effective HSP length: 51 effective length of query: 29 effective length of database: 883,445,692 effective search space: 25619925068 effective search space used: 25619925068 T: 11 A: 40 X1: 16 ( 7.7 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.5 bits) S2: 87 (37.9 bits)