BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (165 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YE... 338 3e-92 UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms R... 293 2e-78 UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwell... 189 3e-47 UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales Re... 171 7e-42 UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q... 171 1e-41 UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 169 3e-41 UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC ... 166 3e-40 UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_L... 166 3e-40 UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1... 164 1e-39 UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idio... 160 2e-38 UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium pa... 157 8e-38 UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonad... 155 3e-37 UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostr... 154 9e-37 UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobact... 153 2e-36 UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria ... 153 2e-36 UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdema... 152 4e-36 UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG... 150 1e-35 UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellov... 150 2e-35 UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobaci... 149 3e-35 UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobili... 147 1e-34 UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10... 146 3e-34 UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycopla... 143 2e-33 UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridiu... 143 2e-33 UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria R... 139 5e-32 UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9P... 138 5e-32 UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteri... 138 8e-32 UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli R... 137 1e-31 UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacter... 137 1e-31 UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria Rep... 134 9e-31 UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extr... 130 1e-29 UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax... 130 2e-29 UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulf... 129 4e-29 UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptonip... 129 4e-29 UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacte... 129 4e-29 UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroh... 128 7e-29 UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellula... 128 8e-29 UniRef50_A6L6E7 GAF domain-containing protein involved in signal... 127 2e-28 UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellula... 127 2e-28 UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 127 2e-28 UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepI... 126 3e-28 UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=... 124 1e-27 UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptoco... 124 1e-27 UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6... 122 3e-27 UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesente... 122 4e-27 UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Ta... 121 7e-27 UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria... 119 3e-26 UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri D... 119 5e-26 UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaprot... 118 6e-26 UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodob... 117 2e-25 UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishma... 115 5e-25 UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria ... 115 5e-25 UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypano... 114 8e-25 UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobac... 114 1e-24 UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholep... 112 5e-24 UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DS... 110 2e-23 UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B... 110 2e-23 UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Aj... 109 3e-23 UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum K... 109 4e-23 UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured... 108 4e-23 UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2... 108 6e-23 UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus... 108 6e-23 UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytoph... 107 2e-22 UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX... 106 2e-22 UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobact... 105 7e-22 UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=L... 102 3e-21 UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerot... 99 4e-20 UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms Re... 99 6e-20 UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobas... 98 1e-19 UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistip... 95 8e-19 UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilag... 94 2e-18 UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga ol... 92 6e-18 UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoan... 90 3e-17 UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga l... 89 3e-17 UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mo... 86 3e-16 UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellom... 86 3e-16 UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus K... 85 7e-16 UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=... 85 7e-16 UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 ... 83 3e-15 UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome... 80 3e-14 UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=M... 79 8e-14 UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus... 77 2e-13 UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nod... 77 2e-13 UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 ... 76 3e-13 UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4... 76 4e-13 UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 T... 75 8e-13 UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermos... 72 8e-12 UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=... 70 2e-11 UniRef50_UPI000190977C putative GAF sensor protein n=1 Tax=Rhizo... 69 4e-11 UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermopla... 64 1e-09 UniRef50_D1Y7A2 GAF domain protein (Fragment) n=1 Tax=Pyramidoba... 64 2e-09 UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q... 64 2e-09 UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxoba... 63 4e-09 UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxyd... 62 5e-09 UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter... 57 3e-07 UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacter... 51 1e-05 UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphoh... 51 2e-05 UniRef50_C4XDM2 Putative uncharacterized protein n=2 Tax=Klebsie... 50 3e-05 UniRef50_D2TVU1 Putative uncharacterized protein n=1 Tax=Arsenop... 49 6e-05 UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF s... 47 3e-04 UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyad... 46 4e-04 UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S)... 45 6e-04 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 45 7e-04 UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 45 8e-04 UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 45 0.001 UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein... 44 0.002 UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 43 0.004 UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter... 43 0.004 UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis F... 42 0.008 UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S)... 42 0.009 UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9... 42 0.010 UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=... 42 0.010 UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geob... 41 0.013 UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 T... 41 0.014 UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1... 41 0.017 UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subu... 40 0.019 UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S)... 40 0.020 UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Rose... 40 0.021 UniRef50_D1C8Q9 Diguanylate cyclase with PAS/PAC and GAF sensors... 40 0.028 UniRef50_B2IXL1 Putative GAF sensor protein n=1 Tax=Nostoc punct... 39 0.050 UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacter... 39 0.058 UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepI... 39 0.078 UniRef50_B3E0S0 Sensor protein n=1 Tax=Methylacidiphilum inferno... 39 0.081 >UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YEBR_ECOLI Length = 165 Score = 338 bits (868), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF Sbjct: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG Sbjct: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG Sbjct: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 >UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms RepID=B4SV86_SALNS Length = 165 Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 139/165 (84%), Positives = 152/165 (92%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M+KTE YA LNRDF +LMAGETSFLATLANTSALL+ERLT++NWAGFYLLE DTLVLGPF Sbjct: 1 MSKTELYAALNRDFQSLMAGETSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG+IACVRIPVGRGVCG AVA+N+VQRI+DVH FDGHIACDAASN+EIVLP+ V +IIG Sbjct: 61 QGRIACVRIPVGRGVCGAAVAQNKVQRIDDVHAFDGHIACDAASNAEIVLPVTVGERIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDST FGRFT+EDE GLR LVAQLE VLATTDYKKFFASVAG Sbjct: 121 VLDIDSTAFGRFTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG 165 >UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480J4_COLP3 Length = 158 Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 87/154 (56%), Positives = 112/154 (72%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 N+ EFY +L AL+ E+ +A +AN SALL+ERL D+NW GFY L D LVLGPFQ Sbjct: 3 NQAEFYHELLGQTKALINDESDIIANMANISALLFERLADVNWVGFYRLIDGELVLGPFQ 62 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK+AC+RIPVG+GVCGT +VQRI DVH FDGHIACDA+SN+E+V+P+ + ++I + Sbjct: 63 GKVACIRIPVGKGVCGTCSFTGEVQRISDVHQFDGHIACDASSNAELVVPVKIAGKVIAI 122 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 LDIDSTVF RF EDEQG+ +V E+ + D Sbjct: 123 LDIDSTVFDRFNLEDEQGIVSIVQAFEQNITAMD 156 >UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales RepID=Q4L759_STAHJ Length = 155 Score = 171 bits (434), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 79/149 (53%), Positives = 108/149 (72%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y L + +L+ E + +A L+NTSA+L + L INW GFYL+E++ L+LGPFQG Sbjct: 5 KETNYNLLTKQLQSLIEDEQNLIAILSNTSAILNDNLDQINWVGFYLIENEELILGPFQG 64 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ACV I +G+GVCGTAVA ++ Q ++DVH F GHIACDA S SEIV+P+ V ++IIGVL Sbjct: 65 HPACVHIAIGKGVCGTAVAEDKTQLVKDVHAFPGHIACDANSKSEIVIPIHVNDEIIGVL 124 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 DID+ + RFT+ED++GL +V +EK L Sbjct: 125 DIDAPITDRFTNEDKEGLEVIVKVIEKQL 153 >UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q65G44_BACLD Length = 164 Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 83/151 (54%), Positives = 104/151 (68%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + Y L + +AL GE +A AN SALLY+ L D+NWAGFY +D LVLGPFQ Sbjct: 10 SKEKKYELLLKQIDALTEGEPDMIANTANASALLYQSLEDVNWAGFYFAKDGELVLGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G ACVRIP G+GVCGTA +V+R+EDV+ F GHIACDAAS SEIV+PL V IIGV Sbjct: 70 GLPACVRIPFGKGVCGTAYTNGRVERVEDVNAFPGHIACDAASQSEIVVPLEVDGSIIGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 LDIDS + RF + DE L++ +L + L+ Sbjct: 130 LDIDSPIKNRFDETDEYYLKKFTEKLGERLS 160 >UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 Length = 160 Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 80/135 (59%), Positives = 101/135 (74%), Gaps = 3/135 (2%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 E F+A A SA LY +L D+NWAGFYL ++ LVLGPFQG+IACVRIP GRGVCG A Sbjct: 28 ERDFIANAAQFSAFLYTQLDDLNWAGFYLNRNEELVLGPFQGQIACVRIPFGRGVCGAAA 87 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 Q QR++DVH F GHIACD+ASNSE+V+PL+ + ++IGVLD+DS GRF +ED+ G+ Sbjct: 88 QSRQTQRVQDVHEFPGHIACDSASNSELVVPLIKEGRLIGVLDLDSPSVGRFNEEDQAGI 147 Query: 141 RQLVAQLEKVLATTD 155 +LVA LA+TD Sbjct: 148 ERLVAIF---LASTD 159 >UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CNA2_9ACTN Length = 163 Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 103/152 (67%), Gaps = 7/152 (4%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-------LVLGP 59 Y L + L + +L LANT+ALL+ L DINWAGFYL++ DT L LGP Sbjct: 4 YTLLAQQIEELAEIDAHWLPVLANTAALLWGALEDINWAGFYLMDSDTGSDGVPELRLGP 63 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +ACVRIP G+GVCGTA + Q +EDVH F GHIACDAASNSE+V+PL VK ++ Sbjct: 64 FQGNVACVRIPFGKGVCGTAAETEKSQLVEDVHKFPGHIACDAASNSEVVVPLKVKGSVV 123 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 GVLDIDS GRF +ED GL + ++E+V+ Sbjct: 124 GVLDIDSPTRGRFGEEDLLGLEAVARKIEQVV 155 >UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_LISW6 Length = 166 Score = 166 bits (419), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 78/143 (54%), Positives = 104/143 (72%), Gaps = 2/143 (1%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPF 60 K E YA + A++AGE + +A L+N S++L + L+DINW GFYLLE +T LVLGPF Sbjct: 11 KEENYALAFKQVQAMIAGEPNLIANLSNVSSILNQALSDINWVGFYLLEKETNQLVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC+RIP+G+GVCG+A + + +E+VH F GHIACDAASNSEIVLP+V Q++G Sbjct: 71 QGLPACIRIPLGKGVCGSAASEEKTYIVENVHDFPGHIACDAASNSEIVLPIVKNEQLLG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQL 143 VLDIDS +F RF D+ L ++ Sbjct: 131 VLDIDSPLFNRFDKVDQMWLEKI 153 >UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1J5_LISGR Length = 167 Score = 164 bits (414), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 104/144 (72%), Gaps = 2/144 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGP 59 +K E Y+ + A++ GETS +A L+N SALL + L +INW GFYL E+ D LVLGP Sbjct: 15 SKEENYSLCAKQIKAMIDGETSLIANLSNVSALLNQALENINWVGFYLYEESSDQLVLGP 74 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC+RIP+G+GVCG+A A +EDV+ F GHIACDAAS SEIV+P+ +++++I Sbjct: 75 FQGLPACIRIPLGKGVCGSAAAEQSTYLVEDVNAFPGHIACDAASRSEIVVPITIEDELI 134 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQL 143 GVLDIDS GRF + D++ L Q+ Sbjct: 135 GVLDIDSPEVGRFDEVDQKWLEQI 158 >UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idiomarina baltica OS145 RepID=A3WPB2_9GAMM Length = 156 Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 75/151 (49%), Positives = 104/151 (68%), Gaps = 5/151 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPFQGKIACV 67 D+ A+ +GE+ +A LAN SAL++++ DINWAGFYL + LVLGPFQGK+ACV Sbjct: 9 DIVTQCEAITSGESDLIANLANISALIFDQFEDINWAGFYLTRGERELVLGPFQGKVACV 68 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 RIP G+GVCG A +Q + DVH F GHIACDAASN+E+V P++V + +GVLDIDS Sbjct: 69 RIPFGQGVCGVAADSQALQHVHDVHEFSGHIACDAASNAEVVAPIIVDGKTVGVLDIDSP 128 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 GRF+ ED ++ A++ + AT ++ + Sbjct: 129 TVGRFSAEDA----EMFARIAAICATFNWNQ 155 >UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W841_ATOPD Length = 176 Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 81/172 (47%), Positives = 105/172 (61%), Gaps = 22/172 (12%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------------ 54 Y L + +L + +L L+N +ALL++ L DINWAGFYL++ T Sbjct: 4 YGLLAKQIISLAEVDAHWLPVLSNAAALLWDALDDINWAGFYLVDPATVAGVELGSGSGA 63 Query: 55 ----------LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 L LGPFQGK+ACVRIP GRGVCGTA A Q +EDVH F GHIACD+AS Sbjct: 64 EPGLEPVSPDLRLGPFQGKVACVRIPFGRGVCGTAAATKTSQLVEDVHQFPGHIACDSAS 123 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 NSE+V+P+ +Q++GVLDIDS RFT ED GL ++V LE + +D+ Sbjct: 124 NSEVVVPIFEGDQVVGVLDIDSPSAARFTQEDLAGLERVVKALESCVDFSDF 175 >UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonadales RepID=Q2GC44_NOVAD Length = 160 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 71/142 (50%), Positives = 98/142 (69%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 ++ E +ADL AL GE +A +AN +AL+++ L D+NWAGFY + + LVLGPF Sbjct: 11 SRAELHADLLEAARALTDGEPDGVANMANVAALIWQFLPDLNWAGFYRMVEGELVLGPFV 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK AC+RIP+G+GVCGTA A + Q + DVH F GHIACDAAS SE+V+P++ +I V Sbjct: 71 GKPACIRIPLGKGVCGTAAASGETQLVADVHAFPGHIACDAASRSELVVPVLRDGGVIAV 130 Query: 122 LDIDSTVFGRFTDEDEQGLRQL 143 +D+DS RF +ED +G+ L Sbjct: 131 IDLDSPSPSRFDEEDARGIEAL 152 >UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostridium RepID=A7GHC9_CLOBL Length = 165 Score = 154 bits (390), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 65/130 (50%), Positives = 100/130 (76%) Query: 18 MAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCG 77 + GE +A L+N SA++ + ++NWAGFYL++D LVLGPFQG AC RI +G+GVCG Sbjct: 27 LLGEKDVIANLSNASAIIMALIDNLNWAGFYLMKDGELVLGPFQGMPACDRIKIGKGVCG 86 Query: 78 TAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDE 137 A++ Q+QR++DVH F+GHIACD+++NSE+V+P++ +++I+G LD+DS FGRFT+ +E Sbjct: 87 VAISSRQIQRVDDVHKFEGHIACDSSTNSELVVPIIKEDKILGGLDLDSIEFGRFTELEE 146 Query: 138 QGLRQLVAQL 147 + ++ V L Sbjct: 147 KYFKKFVQIL 156 >UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=C7RCG9_KANKD Length = 171 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 3/151 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLG 58 +K E+Y L +AL+A +++++ +A SA +++ L D+NW+GFYL+ D+L+LG Sbjct: 15 DKPEYYRQLALQLDALLAEDSNWITNMAQMSAFIFQMLPDLNWSGFYLVNPEKADSLILG 74 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 P+QGK+ACV IP GRGVCG A A + Q +EDVH F+GHIACDAAS SE+V+P+V+ Q+ Sbjct: 75 PYQGKVACVHIPYGRGVCGAAAATLETQLVEDVHKFEGHIACDAASQSEVVIPVVINGQL 134 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 GVLDIDS + RF +D GL L+ K Sbjct: 135 KGVLDIDSPITNRFDQQDADGLTLLLNTFTK 165 >UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria RepID=A9ADC3_BURM1 Length = 167 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 76/143 (53%), Positives = 94/143 (65%), Gaps = 1/143 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + YA L AL+ E +A AN SAL+Y L +NWAGFY + LV+GPFQ Sbjct: 11 SKADQYATLVEQARALVESERDLIANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQ 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIG 120 GK ACVRI +G+GVCGTA + Q + DVH F GHIACDAAS SEIV+PLV + +IG Sbjct: 71 GKPACVRIALGKGVCGTAAQTRETQVVRDVHAFPGHIACDAASESEIVVPLVADDGTLIG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQL 143 V D+DS V RF DED +G+ L Sbjct: 131 VWDVDSPVAARFDDEDRRGMEAL 153 >UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y9Q1_9FIRM Length = 156 Score = 152 bits (384), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 72/138 (52%), Positives = 97/138 (70%) Query: 15 NALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRG 74 AL +GET + LAN SAL+ + + INWAGFYL++ LVLGPFQGK AC I +G+G Sbjct: 17 KALCSGETDRICCLANLSALIMQSMPRINWAGFYLMKQGELVLGPFQGKPACTHIALGKG 76 Query: 75 VCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTD 134 VCGTA +N+ + DVH F GHIACD AS SEIV+PLV +++++GVLDID+ + RF Sbjct: 77 VCGTAAQKNECLVVRDVHQFPGHIACDEASRSEIVVPLVYQSEVVGVLDIDAPIPDRFGS 136 Query: 135 EDEQGLRQLVAQLEKVLA 152 +E LR+L A + ++ A Sbjct: 137 VEEAVLRELGAWIGELFA 154 >UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG8_BURPS Length = 202 Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 73/143 (51%), Positives = 93/143 (65%), Gaps = 1/143 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y L AL+ ET +A AN ++L+Y L +NWAGFY + LV+GPFQ Sbjct: 43 SKPALYETLAAQARALVETETDIVANAANFASLVYHSLDGLNWAGFYFFDGRELVVGPFQ 102 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIG 120 GK ACVRIP+G+GVCGTA Q + DVH F GHIACD+AS SEIV+PLV ++ +IG Sbjct: 103 GKPACVRIPLGKGVCGTAAQTRGTQVVHDVHAFAGHIACDSASQSEIVVPLVARDGALIG 162 Query: 121 VLDIDSTVFGRFTDEDEQGLRQL 143 V D+DS + GRF ED G+ L Sbjct: 163 VWDVDSPLVGRFDAEDATGMEAL 185 >UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHM4_BDEBA Length = 165 Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 72/143 (50%), Positives = 96/143 (67%), Gaps = 2/143 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+FY +L+ + L E + LAN SALL + L +INW GFYLL ++ L+L FQ Sbjct: 11 DKTKFYKELHSEAEGL--AEKEWFVNLANFSALLKQHLPEINWVGFYLLHNNELLLSSFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI +G+GVCGTA Q Q + DV F GHI CDAAS SEIV+PL+ +++GV Sbjct: 69 GLPACTRIAIGKGVCGTAAKTLQTQLVADVDQFPGHIVCDAASKSEIVVPLIHNGKLLGV 128 Query: 122 LDIDSTVFGRFTDEDEQGLRQLV 144 LD+D+ V RF ED++GL+ LV Sbjct: 129 LDVDAPVLNRFDSEDQKGLQGLV 151 >UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobacillales RepID=Q039U2_LACC3 Length = 160 Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 6/149 (4%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACVRIPV 71 + L+ GET+ + LAN SALL + +TD+NWAGFYL D T L LGPFQGK+AC+ I Sbjct: 12 LDGLLTGETNPITVLANASALLNDLMTDLNWAGFYLYNDKTGQLDLGPFQGKVACMHIQP 71 Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 G GV GT+ A+N V R+ +VH F GHIACD+ASN+EIV+P+ V N+++ ++DIDS R Sbjct: 72 GNGVVGTSYAQNAVLRVPNVHEFAGHIACDSASNAEIVVPITVDNRVVAIMDIDSPTLDR 131 Query: 132 FTDEDEQGLRQ----LVAQLEKVLATTDY 156 F++ DE L + L A L+ T Y Sbjct: 132 FSENDEAILTKFGETLAAHLDTAALNTVY 160 >UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobilis RepID=Y507_ZYMMO Length = 161 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y+DL L++ E +A +ANT+AL++ + D+NW GFY L+LGPFQ Sbjct: 10 SKKTLYSDLLTTLKELLSEEGDPIANMANTAALIWTYMPDLNWVGFYRAIRSYLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK-NQIIG 120 GK+ACV+IP GRGVCGTA A ++Q + DVH + HI+CD ++ SE+V+P+ + NQI+ Sbjct: 70 GKVACVKIPYGRGVCGTAAATGRIQCVRDVHTYPNHISCDPSAASELVIPIRGRQNQILA 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 V+D++S GRF ED +G +L+ L + L Sbjct: 130 VIDLESPTMGRFDAEDVEGCSRLMEVLGRFLG 161 >UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH8_9BACL Length = 155 Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 66/139 (47%), Positives = 97/139 (69%), Gaps = 3/139 (2%) Query: 16 ALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKIACVRIPVGR 73 AL++GE + + L+N SAL E L + NW GFYLL++ + LVLGPFQGK+AC RIP + Sbjct: 16 ALVSGEENLVTNLSNLSALYKEYLPNTNWVGFYLLDEKNNNLVLGPFQGKVACTRIPFNK 75 Query: 74 GVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFT 133 GVCG + +EDVH F GHIACD+A+NSE+V+P++ ++++ +LDIDS F RF+ Sbjct: 76 GVCGHCYTTRETIYVEDVHKFPGHIACDSATNSELVVPIIQNDKVVALLDIDSIEFDRFS 135 Query: 134 DEDEQGLRQLVAQL-EKVL 151 E+ + ++ Q+ EKV+ Sbjct: 136 KEEVEAFSEVTKQVFEKVI 154 >UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6T4_MYCS5 Length = 148 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 93/141 (65%), Gaps = 6/141 (4%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L + + +L+A E + LANTSA +Y+ ++NWAGFYL E + L L FQGKIAC +I Sbjct: 2 LVQQYKSLIADEVKIYSILANTSAFIYQNFKNLNWAGFYLAEGEVLYLSSFQGKIACTQI 61 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P RGVCG A + ++DVH F HIACD+ASNSEIV+P++V +++ GVLD+DS + Sbjct: 62 PFSRGVCGKAAREQKTIVVDDVHEFKDHIACDSASNSEIVIPIIVNSKLYGVLDLDSPLK 121 Query: 130 GRFTDEDEQGLRQLVAQLEKV 150 F D +++V LEK+ Sbjct: 122 SNFKD------KEIVLTLEKI 136 >UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridium RepID=A6LWI6_CLOB8 Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 67/135 (49%), Positives = 92/135 (68%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 E S + L N SAL+ + INW GFYL++++TLVLGPFQG AC +I +G+GVCG A Sbjct: 31 EDSSITKLCNASALINSLIDRINWCGFYLVKNNTLVLGPFQGMPACTKIEIGKGVCGKAA 90 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 + ++DVH F+GHIACDAASNSEIV+P++ + +IGVLD+DS F RFT+ ++ L Sbjct: 91 LEKETLLVKDVHNFEGHIACDAASNSEIVIPIIKEGNLIGVLDLDSEEFERFTEVEKTYL 150 Query: 141 RQLVAQLEKVLATTD 155 + V L K + D Sbjct: 151 EKAVVILSKYIEWND 165 >UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria RepID=Q0AMT4_MARMM Length = 157 Score = 139 bits (349), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 71/151 (47%), Positives = 95/151 (62%), Gaps = 5/151 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLED---DTLVL 57 +K + Y D+ + A++AGETS A LA S LL E + W GFY ++ LV+ Sbjct: 3 SKADAYQDVRKQIAAVIAGETSRTARLATASCLLREMFGERFFWTGFYEVDPAKPTELVV 62 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKN 116 GP+QG + C+RIP GRGVCG A A + Q +EDVH F GHIACD+ SNSEIV+P+ Sbjct: 63 GPYQGTMGCLRIPFGRGVCGAAAATGETQLVEDVHAFPGHIACDSRSNSEIVVPVRDAAG 122 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 ++ VLDIDST FG F + D+ GL + +L Sbjct: 123 ALVAVLDIDSTEFGAFDEVDQAGLEAICGEL 153 >UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9PMB7_9PAST Length = 143 Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 89/139 (64%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC 66 Y+ L + ++ ET ++ +ANTSA +YE + D+NW GFY+++D L +GPFQGK+AC Sbjct: 3 YSLLLKQLEQILETETYIISRMANTSAFIYEHMPDLNWVGFYIVKDGVLKVGPFQGKVAC 62 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 I G+GVCG +EDVH FDGHIACD+AS SE+V+P+ ++I LD+DS Sbjct: 63 SDIGFGKGVCGYTWKTGTTTVVEDVHQFDGHIACDSASQSEVVVPIFKDGEMIAELDVDS 122 Query: 127 TVFGRFTDEDEQGLRQLVA 145 RF+ ED + L + A Sbjct: 123 PRLARFSAEDVEFLEKCAA 141 >UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N5U0_9FIRM Length = 157 Score = 138 bits (347), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 59/132 (44%), Positives = 87/132 (65%) Query: 12 RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPV 71 + +AL+ ++ L+N SA + + +DI+W GFYL +D+ L+LGPFQGK AC IP Sbjct: 10 QQLDALLENINYEISLLSNASAFIKQVFSDISWVGFYLCQDNQLILGPFQGKTACTLIPF 69 Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 +GVCG + + DVH F HIACD+A+NSE+V+PL++ N + GVLD+DS F R Sbjct: 70 NKGVCGACATNLKTYCVPDVHQFPSHIACDSATNSELVIPLIIDNSLYGVLDLDSRCFAR 129 Query: 132 FTDEDEQGLRQL 143 F +D++ L +L Sbjct: 130 FQPDDQEELEKL 141 >UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli RepID=Q04F13_OENOB Length = 174 Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 65/141 (46%), Positives = 92/141 (65%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y+ LN +L+ GE +A ++N +L++ +IN +Y L++ L+LGPFQG Sbjct: 27 KQTRYSLLNDQAQSLLDGEHDLIANMSNLVSLIFNSDQNINGTTYYRLKNGELILGPFQG 86 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 K ACV IP+GRGVCGTA A + + +VH F+GHIACD SNSEIV+P+ KN+ GVL Sbjct: 87 KPACVHIPLGRGVCGTAAALKKTVIVSNVHKFEGHIACDKDSNSEIVVPIFSKNEFWGVL 146 Query: 123 DIDSTVFGRFTDEDEQGLRQL 143 D+DST F F D++ L ++ Sbjct: 147 DLDSTKFNYFDKNDQEYLEKI 167 >UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacterium RepID=C6JPT3_FUSVA Length = 168 Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/158 (44%), Positives = 97/158 (61%), Gaps = 3/158 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E Y+ + ++ E+ +A LAN SA + +INW GFYLL+ + LVLGPF Sbjct: 11 LNFKEKYSAFLNEIEEYLSKESDPIANLANASAFISAFFDEINWCGFYLLKKNELVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 G A RI +G GVCGT+V R + +E+V F GHI CD S SE+V+PL+ +I G Sbjct: 71 CGMPATTRIQIGNGVCGTSVERKEKIVVENVCEFPGHITCDVRSKSEVVIPLIKDEKIYG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 VLDIDS V+ RF+ E+ + L + VA + K TDY+K Sbjct: 131 VLDIDSAVYSRFSSEEVEILEKAVAIINKY---TDYEK 165 >UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria RepID=Q1QVQ4_CHRSD Length = 155 Score = 134 bits (338), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 67/139 (48%), Positives = 85/139 (61%), Gaps = 2/139 (1%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGPFQGKIA 65 YA L R L+ +L A T A L + D+NWAGFYL + TL+LGPFQG A Sbjct: 4 YALLARQLETLL-DTRDWLTNTAQTCAFLMHEIPDLNWAGFYLQRQPGTLILGPFQGLPA 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 C IP +GVCG A QR+ DVH F GHIACDAAS SE+V+P+ ++ GVLD+D Sbjct: 63 CNPIPFDKGVCGAAATSRHTQRVADVHAFPGHIACDAASRSELVVPIECGAELWGVLDLD 122 Query: 126 STVFGRFTDEDEQGLRQLV 144 S RF+D D+ G+ +LV Sbjct: 123 SPQPARFSDADQAGIERLV 141 >UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MM74_9FIRM Length = 152 Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 85/131 (64%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 ET F+A +N +A + + +INW GFY ++++ LVLGPFQGKIAC IP +G+CG Sbjct: 16 ETDFIAATSNLTAFMNQLFPNINWIGFYFVKNNELVLGPFQGKIACTHIPFEKGICGRCY 75 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 ++ I DV HIACD+AS SE+ +P++ +N IG+LDID+ + RFT EDE+ Sbjct: 76 REKRLLNIPDVLSIQDHIACDSASRSELCIPILKENNCIGMLDIDAPIKNRFTKEDEKKA 135 Query: 141 RQLVAQLEKVL 151 +V+ EK + Sbjct: 136 SLIVSLYEKAI 146 >UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B632 Length = 153 Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L + L++ F+ L+N SALL + + D++W GFY++ LVLGPFQGK+AC I Sbjct: 4 LIKQLEELISPNEWFVTNLSNASALLVDAIDDLSWVGFYMMRAGELVLGPFQGKVACTHI 63 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIGVLDIDSTV 128 VG+G CG V +Q IEDV F G+IACDA + SEIV+PL + ++I VLD+DS Sbjct: 64 KVGKGACGVCVQGDQTILIEDVTTFPGYIACDAEAKSEIVVPLHDEEGKVIAVLDVDSNS 123 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLAT 153 GRF D++++ L LEK L + Sbjct: 124 LGRFGDKEQELFEALGKVLEKSLWS 148 >UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRB2_9BACT Length = 169 Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 60/114 (52%), Positives = 81/114 (71%), Gaps = 2/114 (1%) Query: 44 WAGFYLL--EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 WAGFYL+ +++ LVLGPFQGK AC RIP+ +GVCG A ++ + DV +F GHIACD Sbjct: 54 WAGFYLMREKENALVLGPFQGKPACTRIPLDKGVCGAAARTGEIHIVPDVELFPGHIACD 113 Query: 102 AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 AS SEIVLPL+ + +++GVLD+DS + RF+ ED +GL + V L K +A D Sbjct: 114 GASASEIVLPLMREGRVLGVLDLDSPLRKRFSSEDGEGLLKFVETLHKYVAWDD 167 >UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF9_9FIRM Length = 170 Score = 129 bits (324), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 59/134 (44%), Positives = 88/134 (65%), Gaps = 1/134 (0%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 E+ F+A +AN S+++ + D+NWAGFY++ D LVLGPFQG AC R+ +GVC +A Sbjct: 31 ESDFVAMMANLSSVIMATIKDLNWAGFYIVRKDQLVLGPFQGLPACTRLK-DKGVCVSAW 89 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 + R+++VH F H+ACD+ASNSE+VLP+ + ++I VLD+DS RF + +E+ Sbjct: 90 QNKSIVRVKNVHEFKDHVACDSASNSEMVLPIKIHGEVIAVLDLDSPKIARFGEVEEKHF 149 Query: 141 RQLVAQLEKVLATT 154 LV +E L T Sbjct: 150 ADLVKLIEDQLEKT 163 >UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C822_9FIRM Length = 148 Score = 129 bits (323), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 59/122 (48%), Positives = 80/122 (65%), Gaps = 2/122 (1%) Query: 25 LATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACVRIPVGRGVCGTAVAR 82 +A ++N ALL+ + +INW GFY+ ++ LGPFQGK+AC RIP +GV GT Sbjct: 20 IANISNLIALLFHEMENINWLGFYICDEKNQECTLGPFQGKVACTRIPYRKGVVGTCAKT 79 Query: 83 NQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 142 + QRIEDVH F GHIACD ASNSEI +PL +++ +LDIDS F F+ ED+ L + Sbjct: 80 QETQRIEDVHKFAGHIACDCASNSEICIPLKKDGKLVAILDIDSFEFNNFSIEDQAILEK 139 Query: 143 LV 144 + Sbjct: 140 IC 141 >UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW57_CHLT3 Length = 163 Score = 128 bits (321), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 61/143 (42%), Positives = 89/143 (62%), Gaps = 1/143 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+ Y L R+ L+ G+ +A AN AL++ + DI+WAG Y + L+LGPFQ Sbjct: 12 SKTDLYKSLTRELFVLLKGDNDLIANTANFVALIFHNVPDIHWAGIYFYKSGKLILGPFQ 71 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-SNSEIVLPLVVKNQIIG 120 GK AC ++ VGRG+ G A R + +E+VH G I+ +AA +NS+I +PL+ + +IG Sbjct: 72 GKPACPKLEVGRGLTGIAAERMKTTMLENVHEIPGQISFNAAETNSQISVPLIKEGHLIG 131 Query: 121 VLDIDSTVFGRFTDEDEQGLRQL 143 VLDI S + RF ED+ GL L Sbjct: 132 VLDISSELLSRFDAEDKAGLENL 154 >UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellular organisms RepID=GAFA_DICDI Length = 158 Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 69/148 (46%), Positives = 92/148 (62%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPF 60 +K E Y +L L+ GE + +A LAN +A L E+ + W GFYL++ ++ LVL PF Sbjct: 11 SKEEQYENLLPQIEGLLTGENNQIANLANVTAALKEQF-NFFWVGFYLVDTENELVLAPF 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG IAC RI GRGVCGTA + + + DV F GHIAC + S SEIVLPL + IIG Sbjct: 70 QGPIACTRIRKGRGVCGTAWQQEKTLIVPDVEKFPGHIACSSLSKSEIVLPLYKQGNIIG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 VLD+DS F + DE+ L Q++ L+ Sbjct: 130 VLDVDSDKLNSFDEIDEKYLTQILKLLD 157 >UniRef50_A6L6E7 GAF domain-containing protein involved in signal transduction n=7 Tax=Bacteroidales RepID=A6L6E7_BACV8 Length = 161 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 NK E Y F L++ E ++ LANT+A L E W GFYL++DD L+LGPFQ Sbjct: 11 NKVERYRLFLPQFELLISDEKEEISVLANTAAALREAF-GFFWVGFYLVKDDQLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI G+GVCGT+ A + + +V F GHIAC + S SEIV+P++ Q+ GV Sbjct: 70 GSTACYRIHKGKGVCGTSWAEARTLIVPNVEQFPGHIACSSLSRSEIVVPILANGQVKGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS + F + D + L ++ A + K L Sbjct: 130 LDIDSNLLNFFDETDRRYLEEVTAIVAKTL 159 >UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=Q4DK73_TRYCR Length = 549 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 71/171 (41%), Positives = 98/171 (57%), Gaps = 21/171 (12%) Query: 2 NKTEFYADLN---RDF----NALMAGETSFLATLANTSALLYERLT------------DI 42 +K E Y L R F ++++ + + L+N SALL+ L + Sbjct: 14 SKRELYTRLEAVVRSFVELPSSMLTPHFNLMIGLSNVSALLFYELNRFANTNAMLSDLPL 73 Query: 43 NWAGFYLLEDDT-LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYLL+ LVLGPFQG+ AC+ + +GRGVCGTA + + + DVH F GHIACD Sbjct: 74 NWLGFYLLQSPQRLVLGPFQGRPACIEVAMGRGVCGTAAQKGETLIVPDVHAFPGHIACD 133 Query: 102 AASNSEIVLPL-VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + SNSEIV+P+ K ++GVLD+DST F ED QGL+ + L + L Sbjct: 134 SLSNSEIVVPIKTAKGHVVGVLDVDSTQREFFDAEDAQGLQNIATVLSQNL 184 >UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q754F5_ASHGO Length = 176 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 91/143 (63%), Gaps = 7/143 (4%) Query: 14 FNALMAGETSFLATLANTSALLYERLTD----INWAGFYLLEDD---TLVLGPFQGKIAC 66 + AL + + + LAN S+LL+ + +NWAGFY+ E D L+LGPFQGK+AC Sbjct: 30 YQALAEHQDNMVCNLANASSLLWHVYRNLNVKVNWAGFYITEKDDPNMLLLGPFQGKVAC 89 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 RI GRGVCGTA +VQ + DV V+ GHIACD + SE+V+P++ N+ + ++D+D Sbjct: 90 QRIQFGRGVCGTAALTQEVQVVPDVTVYPGHIACDGDTKSEMVVPILQDNRTVAIMDLDC 149 Query: 127 TVFGRFTDEDEQGLRQLVAQLEK 149 + FTD D++ L +L ++ + Sbjct: 150 SEHNGFTDLDKKYLEKLAQEISR 172 >UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VMX6_NAEGR Length = 186 Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/159 (41%), Positives = 98/159 (61%), Gaps = 14/159 (8%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLY----ERLTDINWAGFYLLEDDT------ 54 E Y L ++ ++M+ E++ +A LAN ++L Y E INW GFYL++ T Sbjct: 23 ETYTKLLKEIESVMSDESNLIANLANCASLFYNTFLENGHPINWFGFYLIDVKTNDKPIR 82 Query: 55 -LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 LVLGPF GK+AC RI G+GVCG + + ++ + +VH F GHIACD+ASNSEI +PL Sbjct: 83 ELVLGPFHGKLACTRIRFGKGVCGACITKEEIIVVPNVHEFSGHIACDSASNSEICVPLF 142 Query: 114 --VKNQIIGVLDIDSTVFGRFTDE-DEQGLRQLVAQLEK 149 Q+ G++D+DST +F+ E D + L++L + K Sbjct: 143 NSQNGQVFGLIDVDSTALEQFSLEIDGKYLKELANLITK 181 >UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=21 Tax=Saccharomyceta RepID=YKG9_YEAST Length = 180 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/157 (39%), Positives = 96/157 (61%), Gaps = 8/157 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLL---EDD 53 +NK E L + L G+ +++ L+N S+L++ DINWAGFY+ E++ Sbjct: 19 LNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEEN 78 Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 TL+LGPFQGK+AC I G+GVCGTA + + Q + DV+ + GHIACD + SEIV+P++ Sbjct: 79 TLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPII 138 Query: 114 VKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 + + +GV+DID + F D++ L +L + K Sbjct: 139 SNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINK 175 >UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptococcus RepID=B1IB31_STRPI Length = 165 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/158 (41%), Positives = 96/158 (60%), Gaps = 3/158 (1%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y LN + + L+ GET+ LA L+N SAL+ R + +AGFYL + LVLGPFQG Sbjct: 6 KQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQG 65 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ++C+RI +G+GVCG A + + DV + +I+CD+ + SEIV+P++ Q++GVL Sbjct: 66 GVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGVL 125 Query: 123 DIDSTVFGRFTDEDEQGLRQLVA-QLEKVLATTDYKKF 159 D+DS+ + D L Q VA LEK T D+ F Sbjct: 126 DLDSSEIEDYDAMDRDYLEQFVAILLEK--TTWDFTMF 161 >UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6_DEBHA Length = 176 Score = 122 bits (307), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 90/148 (60%), Gaps = 7/148 (4%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLLED---DTL 55 K E + + AL +++A LAN S+LL+ ++NW+GFY+L + D L Sbjct: 19 KEEILQSVVDSYEALSYDTRNWVANLANCSSLLWHAYHSMKINVNWSGFYVLNEPRTDEL 78 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK 115 +LGPFQGK+AC I G+GVCG A + + Q + +V+ + GHIACD + SEIV+P+V K Sbjct: 79 ILGPFQGKVACQIIKFGKGVCGNAASSAKTQLVPNVNEYPGHIACDGETQSEIVVPIVNK 138 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQL 143 Q++GVLDID F D D + L QL Sbjct: 139 GQVVGVLDIDCLTLEGFDDIDVKYLEQL 166 >UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RB85_WEIPA Length = 163 Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 62/117 (52%), Positives = 76/117 (64%), Gaps = 3/117 (2%) Query: 34 LLYERLTDINWAGFYLL--EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV 91 +LYE L +NWAGFYL E D L+LGPF GK A VRI G GV G A + ++DV Sbjct: 43 ILYENLATVNWAGFYLYDHEQDELILGPFLGKPAVVRIKPGSGVVGQAYESQETITVDDV 102 Query: 92 HVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 H GHIACD+ASN+EIV+PL +N + IGV+DIDS F RFTD+D+ L L Sbjct: 103 HQHAGHIACDSASNAEIVVPLTRENGEKIGVIDIDSITFNRFTDQDKADLEHFAQTL 159 >UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DN89_STACT Length = 124 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 54/102 (52%), Positives = 71/102 (69%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK 63 T Y + + L A E + L+NTSALL E L++INW GFYL+ED L+LGPFQG+ Sbjct: 5 TTNYKSIQQQLEGLNADEKYMITLLSNTSALLNENLSNINWLGFYLIEDGQLILGPFQGR 64 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN 105 AC I +G+GVCGT+V ++ QR++DVH F GHIACDA S+ Sbjct: 65 PACTPIQIGKGVCGTSVEKDITQRVDDVHAFPGHIACDARSH 106 >UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria RepID=C6S529_NEIML Length = 167 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 65/150 (43%), Positives = 89/150 (59%), Gaps = 3/150 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 +K Y ++ +++A ET +++ LANT+A+L E W GFYL++ D LVL P Sbjct: 10 DKAALYREVLPQIESVVADETDWVSNLANTAAVLKEAFGWF-WVGFYLVDTRSDELVLAP 68 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +AC RIP GRGVCG A A+ + DV+ + HIAC + S SEIV+PL + I Sbjct: 69 FQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVNAYPDHIACSSLSRSEIVVPLFSDGRCI 128 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 GVLD DS +F + D L +L LEK Sbjct: 129 GVLDADSEHLAQFDETDALYLGELAKILEK 158 >UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P9E9_9LACO Length = 155 Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 10/137 (7%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPFQGKIACVRIPV 71 +L+A E S + LAN SAL+ + + +NW GFY + +D LVLGPFQG++AC+ I + Sbjct: 11 LKSLLADEHSPVTILANASALINQTVDQLNWVGFYRYDHANDELVLGPFQGRVACMHIKM 70 Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFG 130 G GVCGTA +VQ + DV + G+I+CDAA+ SE+V+PLV ++ + GVLD+D+ V Sbjct: 71 GAGVCGTAAQDRKVQVVADVSQYPGYISCDAAAKSELVVPLVRQDGSLYGVLDLDAPVRD 130 Query: 131 RFTDEDEQGLRQLVAQL 147 RF +QLVA + Sbjct: 131 RFD-------KQLVATM 140 >UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaproteobacteria RepID=B0SZJ0_CAUSK Length = 164 Score = 118 bits (296), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 85/144 (59%), Gaps = 4/144 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL---LEDDTLVLG 58 +K YA+L ++ +++ GET+ A +A +++L W GFY+ L+D LV+G Sbjct: 13 DKAARYAELAQEIASVLDGETNLTARMATVASMLASSFDHYFWTGFYVVDPLKDRELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQ 117 P+QG + C+RI GRGVCG A Q Q +EDVH F GH+ACD+ S SEIV+P+ Sbjct: 73 PYQGTLGCLRIAYGRGVCGAAAETGQTQLVEDVHAFPGHVACDSRSQSEIVVPVFDAAGT 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLR 141 ++ V D+DS F D+ G+ Sbjct: 133 LLAVFDVDSDQPAAFDAVDQHGIE 156 >UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodobacterales RepID=A3UEE7_9RHOB Length = 166 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 83/147 (56%), Gaps = 5/147 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-TDINWAGFYLLEDDT---LVL 57 K E Y + ++ A++AGETS A A + LL W GFY+++ LV+ Sbjct: 13 TKAEAYVRIGKEIAAIVAGETSRTARYATAACLLAHNFGPRFFWTGFYVVDPQKPQELVV 72 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKN 116 GP+QG + C+RIP GRGVCG A + Q + DV F GHIACD+ S SEIV+P++ Sbjct: 73 GPYQGTLGCLRIPFGRGVCGAAAQSGETQLVRDVEAFPGHIACDSRSRSEIVVPVLDADG 132 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQL 143 + VLD+DS F ED+ GL + Sbjct: 133 ALAAVLDVDSAELDAFDAEDQAGLEAI 159 >UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishmania RepID=A4HD30_LEIBR Length = 524 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 98/171 (57%), Gaps = 21/171 (12%) Query: 2 NKTEFYADLNRDFNALMAG-------ETSFLATLANTSALLYERLT------------DI 42 +K E Y L + AL+ G + + + L+N +AL + L + Sbjct: 13 SKKELYDWLVKQVEALVDGMSKRFTPQANLIIGLSNVAALCFYELNRFCNPGAALEKLKV 72 Query: 43 NWAGFYLLEDDTLV-LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL + L+ LGPFQG+ AC I VG+GVCGT + + +V F HIACD Sbjct: 73 NWFGFYLFQAPGLLALGPFQGRPACTEIRVGKGVCGTVAESGESLVVSNVEEFPSHIACD 132 Query: 102 AASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++S SE+ +P++++N ++ V+D+DST G F++ED++GL ++ A LE+ L Sbjct: 133 SSSKSEVAVPVLIENGSVVAVIDVDSTELGYFSEEDKEGLERVAAVLEQHL 183 >UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria RepID=B8GYQ4_CAUCN Length = 164 Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 11/157 (7%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K YA++ + +++ GE + A +A +++L WAGFY+++ + LV+G Sbjct: 13 DKATRYAEVADEIASVLDGEPNLTARMATVASMLANSFDSYFWAGFYVVDPTKERELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-Q 117 P+QG + C+RI GRGVCG A A Q Q + DVH F GHIACD S SEIV+P+ + + Sbjct: 73 PYQGTLGCLRIAFGRGVCGAAAATGQTQLVPDVHAFPGHIACDGRSQSEIVVPVFDPDGR 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +I V D+DS F + D+ A LEK+L T Sbjct: 133 LIAVFDVDSDKPAAFDEIDQ-------AWLEKILKAT 162 >UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=C9ZNQ7_TRYBG Length = 576 Score = 114 bits (286), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 63/163 (38%), Positives = 93/163 (57%), Gaps = 21/163 (12%) Query: 2 NKTEFYADLNRDFNALMAGETSFLAT-------LANTSALLYERL------------TDI 42 +K FY+ L ++ ++ + LA L+N +A L+ L + Sbjct: 16 DKVTFYSRLVKEVQGIVEFPSKRLAPAANAIINLSNVAASLFYGLNRHANPEAVLQSPPV 75 Query: 43 NWAGFYLLE-DDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL+ + L LGPFQG+ AC I +GRGV GTA + + + DVH F GHIACD Sbjct: 76 NWLGFYLMHGPELLALGPFQGRPACTEIKMGRGVSGTAAQQAKTLVVSDVHEFPGHIACD 135 Query: 102 AASNSEIVLPL-VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQL 143 +ASNSEIV+P+ +++G++D+DST F D D QGL+++ Sbjct: 136 SASNSEIVVPIKSATGEVVGIIDVDSTQLNFFDDVDAQGLQEV 178 >UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobacillales RepID=C5WHK6_STRDG Length = 176 Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 3/147 (2%) Query: 1 MNKT---EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL 57 MNK+ E Y L L A ET+ LA L+N SALL L + +AGFYL + L+L Sbjct: 12 MNKSKKIEQYQLLLAQAQGLFANETNALANLSNASALLKMTLPNSVFAGFYLFDGQELIL 71 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQ 117 GPFQG ++CV I +G+GVCG + + ++DV +I+CDAA+ SEIV+P+V + Sbjct: 72 GPFQGGVSCVHIKLGKGVCGESAQSRRTIIVDDVKQHANYISCDAAAMSEIVVPMVKDDC 131 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLV 144 ++GVLD+DS++ + + D++ L V Sbjct: 132 LVGVLDLDSSLVADYDEVDQEYLEAFV 158 >UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHG8_ACHLI Length = 154 Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 53/121 (43%), Positives = 79/121 (65%), Gaps = 1/121 (0%) Query: 16 ALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGV 75 L++ E + L+ L+N SA L + + D+NW GFY+ ++ L LGPFQGK+AC I G+GV Sbjct: 12 GLLSTEPTNLSILSNASAFLNDAIPDLNWVGFYMYKNGILTLGPFQGKVACNLIMPGKGV 71 Query: 76 CGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDE 135 GT+ ++N+V +++VH + HI CD S SE V+P+ I +LD+DS V RF D+ Sbjct: 72 VGTSYSKNEVIVVKNVHEIENHITCDPISMSETVIPIRHNGAIWAILDLDSPVENRF-DK 130 Query: 136 D 136 D Sbjct: 131 D 131 >UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4P6_SALRD Length = 170 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFY-LLEDDTLVLGPF 60 +K E YAD R +AL+ G T +++ +A + L+ +W GFY + DD L++GP+ Sbjct: 13 DKAERYADTRRRIDALLDGPTDWVSAMATVACELHHSFDHYDWTGFYRAVSDDELLVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLP-LVVKNQII 119 QG C+ I V RGVCG A + Q DV HIAC +++ SEIV+P L + ++ Sbjct: 73 QGPHGCLHIDVDRGVCGAAARTRETQLWPDVSKAPDHIACQSSTQSEIVVPVLTPDDALL 132 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLD+DS G F D + L L L Sbjct: 133 AVLDVDSDTLGAFDPTDREHLEALCRDL 160 >UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B6HFF9_PENCW Length = 205 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 92/187 (49%), Gaps = 41/187 (21%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-------TDINWAGFYLL---- 50 +K + Y L L+ G+ ++++ L+N ++LL+ + +NW GFY+ Sbjct: 13 SKADIYEQLLLSAQGLLDGQRNWVSNLSNVASLLWHAYASLPAPSSSVNWTGFYIRDDKF 72 Query: 51 ------------------------------EDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 ED L+LGPF GK AC I G+GVCGTA Sbjct: 73 PALASPVTSPPLPGAPGSGGVIISTTYSSSEDQLLLLGPFHGKPACQEIRFGKGVCGTAA 132 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 A+ + + DV F GHIACDA S SEIV+P++V + + ++DID T F DED++ L Sbjct: 133 AKQETVVVPDVLDFPGHIACDAESRSEIVVPILVNGETVAIIDIDCTEPSGFDDEDKKYL 192 Query: 141 RQLVAQL 147 +L L Sbjct: 193 EKLATLL 199 >UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Ajellomyces dermatitidis RepID=C5GND5_AJEDR Length = 240 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 62/165 (37%), Positives = 88/165 (53%), Gaps = 30/165 (18%) Query: 14 FNALMAGETSF-----LATLANTSALLYERL-------TDINWAGFYLLEDD-------- 53 FN A + ++ ++ LAN ++LL+ +++NWAGFY+ +D Sbjct: 71 FNRSYANKNAYTGIIKVSNLANVASLLWHAYAALPTPSSNVNWAGFYVRQDKFPSLASPD 130 Query: 54 ----------TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA 103 TL+LGPFQGK AC I GRGVCG A R + + DV ++GHIACDA Sbjct: 131 SDTKGTPSTKTLLLGPFQGKPACQLIQFGRGVCGAAAERRETVLVTDVLNWEGHIACDAE 190 Query: 104 SNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 S SEIV+P++V + + ++D+D T F D D Q L L A L Sbjct: 191 SRSEIVVPILVNGETVAIIDVDCTQPSGFDDVDRQWLEALAAILS 235 >UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum KM20 RepID=B1MXN0_LEUCK Length = 160 Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/126 (44%), Positives = 75/126 (59%), Gaps = 3/126 (2%) Query: 25 LATLANTSALLYERLTDINWAGFYLL--EDDTLVLGPFQGKIACVRIPVGRGVCGTAVAR 82 LA +N +A+L++ + +NW GFYL E D LV+GPF GK A I GV G A + Sbjct: 29 LANYSNAAAILFQNMKQLNWVGFYLYDEESDKLVVGPFLGKPAVALISPESGVVGKAFSA 88 Query: 83 NQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLR 141 + + DVH F GHI CD S SEIV+P++ ++ + +GVLDIDS RFT ED+ L Sbjct: 89 QKTIIVSDVHSFSGHIVCDPESKSEIVVPIITRDGKRLGVLDIDSPELNRFTLEDQVSLE 148 Query: 142 QLVAQL 147 V L Sbjct: 149 HFVQTL 154 >UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured bacterium HF130_AEPn_1 RepID=D0E8J6_9BACT Length = 153 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 56/153 (36%), Positives = 85/153 (55%), Gaps = 2/153 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGP 59 MNK Y ++ +++A E + ++ S LL W GFY ++ L +GP Sbjct: 1 MNKESVYLEVEGQALSVLASEKDPIVIMSTLSCLLKNAFPHFYWVGFYRNIDGKNLKIGP 60 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QI 118 +QG + C+ I G+GVCG + + + DVH F GHIACD S SEIV+P K+ ++ Sbjct: 61 YQGTLGCIDIAFGKGVCGASAQEGKTMVVPDVHEFPGHIACDPKSLSEIVVPWFKKDGEL 120 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + VLDIDST G F D + L +++A+L +L Sbjct: 121 LAVLDIDSTELGSFDLLDAEYLERMLAKLSDLL 153 >UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2CFA2_9FIRM Length = 163 Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 49/128 (38%), Positives = 79/128 (61%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAV 80 E + +A +AN SA + + D+NWAGFY++ D L+LGPFQG AC R+ +GVC A Sbjct: 31 EENPIALMANVSAFIMAIIKDLNWAGFYIVGDGNLILGPFQGLPACTRLSFDKGVCAKAY 90 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 ++ +++DV F H+ CD SNSE+V+P+ + + +LD+DS RF+ + +G Sbjct: 91 REGKIIKVDDVSKFIDHVVCDNNSNSELVVPIFNEGDLKCLLDLDSPKLARFSQVEVEGF 150 Query: 141 RQLVAQLE 148 +++ LE Sbjct: 151 KEIGKILE 158 >UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus oeni RepID=Q04HB5_OENOB Length = 154 Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/134 (51%), Positives = 84/134 (62%), Gaps = 5/134 (3%) Query: 4 TEFYAD--LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 TE AD L++ F A E +A LAN +A+L + + DINWAGFYLLE + LVLGP Sbjct: 2 TELKADTTLSKIFLAAHETEKDKIANLANAAAVLMQFVPDINWAGFYLLEKGSGDLVLGP 61 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QI 118 FQG A RI GV GT + + + DVH F GHIACD ASNSEI LP+ KN + Sbjct: 62 FQGLSATPRIKQDSGVVGTTFTKQTLTIVPDVHQFAGHIACDPASNSEIALPITRKNGEK 121 Query: 119 IGVLDIDSTVFGRF 132 IG+LDIDS + RF Sbjct: 122 IGILDIDSPITNRF 135 >UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAL6_PHYIN Length = 292 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 15/134 (11%) Query: 20 GETSFLATLANTSALLYERLTD----INWAGFYLL----------EDDTLVLGPFQGKIA 65 G+ ++A AN S++++ + INWAGFY + D L+LGPF GK A Sbjct: 134 GQRDYVANAANVSSIIWHAFVEAERPINWAGFYFVRPLANPKETDHDHILILGPFMGKPA 193 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDI 124 C RI GVCG A VQRI DVH F GHIACD AS SE+V+P+ K ++I ++D+ Sbjct: 194 CSRIRFQSGVCGAAWRTKSVQRITDVHEFPGHIACDDASQSELVVPVFDKQGEVIALIDL 253 Query: 125 DSTVFGRFTDEDEQ 138 D F+ EDE+ Sbjct: 254 DCPEKNGFSVEDER 267 >UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX0_9GAMM Length = 163 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K YA + A++ E+ +A LANT+A+L E + W GFY + D LVL FQ Sbjct: 10 DKAARYAQILPQLRAIIEDESDTVANLANTAAVLKEAFGWL-WVGFYRVVGDELVLSAFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 G +AC RI GRGVCG A A+N+ + DV+ HIAC + S SEIV+PL + Sbjct: 69 GPLACTRIARGRGVCGQAWAQNRTLIVPDVNAHPDHIACSSRSQSEIVVPLRDASGAVWA 128 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 VLD D+ F + D QGL + L + Sbjct: 129 VLDADAEALAVFDETDAQGLETIAVWLSE 157 >UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=Q2S9K8_HAHCH Length = 169 Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 57/148 (38%), Positives = 79/148 (53%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFY-LLEDDTLVLGPF 60 K+ Y R + GET + A L+ L+ R +W GFY ++ + + +GP+ Sbjct: 13 EKSAHYQHTLRAIRHAIEGETDWTAILSTVVCELHHRFEYFHWTGFYRVVAHELMKVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QII 119 QG C+ IP RGVCG A +VQ + DV+ F GHIAC + + SEIVLPL N + Sbjct: 73 QGGHGCLTIPFSRGVCGAAAREQKVQLVSDVNEFPGHIACSSTTQSEIVLPLFNANGDVA 132 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLDIDS F DE+ L +L+ L Sbjct: 133 AVLDIDSDHIDAFDAVDERFLAELLTDL 160 >UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=Leotiomyceta RepID=B8M5D8_TALSN Length = 645 Score = 102 bits (255), Expect = 3e-21, Method: Composition-based stats. Identities = 62/165 (37%), Positives = 84/165 (50%), Gaps = 39/165 (23%) Query: 21 ETSFLATLANTSALLYERLTD-------INWAGFYLLED--------------------- 52 ET+ + LAN S+LL+ +NWAGFY+ +D Sbjct: 58 ETNTDSNLANVSSLLWHAYASLPKPSSAVNWAGFYVRDDLFPLLASPKRSNSISGLTTTT 117 Query: 53 ----------DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA 102 L+LGPFQGK AC I GRGVCGTA + + + DV F GHIACDA Sbjct: 118 ISTSYASHHDKKLLLGPFQGKPACQEIRFGRGVCGTAAQKKETVVVPDVLEFPGHIACDA 177 Query: 103 ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 S SEIV+P++ + + + ++DID T F + D++ L QL AQL Sbjct: 178 DSRSEIVVPILFEGETVAIIDIDCTEPAGFDEVDKKYLEQL-AQL 221 >UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EYD5_SCLS1 Length = 155 Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 56/151 (37%), Positives = 80/151 (52%), Gaps = 18/151 (11%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT----LV 56 ++K E YA + + L G+ +++A S FY L+ + L+ Sbjct: 13 ISKEEAYAQVLEEARGLFDGQRNWIAIEIEIS--------------FYTLDPSSTKPSLI 58 Query: 57 LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 LGPFQGK+AC I RGVCGTA + Q + DV F GHIACDAAS SEIV+P++V Sbjct: 59 LGPFQGKVACQTIAFSRGVCGTAASTQTTQLVPDVEKFPGHIACDAASQSEIVVPIIVDG 118 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + ++D+D V F + D + L +L L Sbjct: 119 IVKAIIDVDCGVKEGFDEVDRKWLEELAGVL 149 >UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms RepID=Q3J6E1_RHOS4 Length = 150 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 79/142 (55%), Gaps = 6/142 (4%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV-LGPFQGKIA 65 Y L++ AL GE +A +A + ++ +W GFY + L+ +GP+QG Sbjct: 3 YDQLDQTIEALCHGEQDTVALMATVACEIHHAHPLSDWTGFYRVTGPELLKIGPYQGAHG 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN---QIIGVL 122 C+ IP RGVCG A ++Q + DV F HIAC + + SEIVLP V+N ++GVL Sbjct: 63 CLVIPFSRGVCGAAARTGRIQLVPDVEAFPDHIACSSTTRSEIVLP--VRNGEGWLLGVL 120 Query: 123 DIDSTVFGRFTDEDEQGLRQLV 144 D+DS FT+ED L+ L+ Sbjct: 121 DLDSNTPAAFTEEDAARLQALL 142 >UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5K748_CRYNE Length = 191 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/171 (35%), Positives = 87/171 (50%), Gaps = 24/171 (14%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD------------INWAGFYLL 50 K EFY + AL+ GE ++ L+ SA+LY +NW GFYL Sbjct: 16 KAEFYDHVVSHLEALLEGERYWVTNLSQASAILYHSFLACSIYGGDAHSPVVNWCGFYLQ 75 Query: 51 ED---------DTLVLGPFQGKIACVRI-PV-GRGVCGTAVARNQVQRIEDVHVFDGHIA 99 L+LGP+ G+ AC+ I P G+GVC A + DV + GHIA Sbjct: 76 PPAHPSSSSSSSPLLLGPYHGRPACLSITPTPGKGVCADAFVNQATLIVPDVETYPGHIA 135 Query: 100 CDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 CD + SEIV+PL + ++IGVLD+DST F ++D++GL ++ L K Sbjct: 136 CDGDTKSEIVVPLRDGDGKVIGVLDLDSTQLATFDEDDKKGLERVAEVLAK 186 >UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYW5_9BACT Length = 151 Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 47/123 (38%), Positives = 73/123 (59%), Gaps = 1/123 (0%) Query: 26 ATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQV 85 A LA A+L+ ++ W G Y L DD L++ +QG +AC ++ GVC AV+ + Sbjct: 27 ARLATMEAVLHHKMQTFFWTGVYALIDDELIVRSYQGPVACQKLRHHTGVCWAAVSTGET 86 Query: 86 QRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLV 144 + DV F GHIAC++ S SEIVLP+ + ++ LD+DS F EDE+GL++++ Sbjct: 87 VIVPDVERFPGHIACNSKSRSEIVLPIRDREGRVFACLDVDSDRLDAFDREDEEGLKKIL 146 Query: 145 AQL 147 + L Sbjct: 147 SLL 149 >UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P1G5_USTMA Length = 230 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 69/208 (33%), Positives = 93/208 (44%), Gaps = 66/208 (31%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD--------INWAGFYLL-- 50 + K +FY L +L+ T +++ L+N S+L++ + INWAGFYLL Sbjct: 14 VTKADFYDHLESSLISLIDPGTDWISALSNASSLVFNSMNRFPAWTSKRINWAGFYLLSP 73 Query: 51 ------------EDDTLVLGPFQGKIAC---VRIPVGRGVCG--TAVARNQVQRIEDVHV 93 + TL+LGPF G AC V +P G+GVC +AV +V R+ D Sbjct: 74 LLPSEIVSPKKRKHPTLLLGPFNGLPACQLIVSVP-GKGVCADASAVLPPRVVRVADTDA 132 Query: 94 FDGHIACDAASNSEIVLPLVVK------------------NQ------------------ 117 + GHIACD+ S SEIV+PLV+ NQ Sbjct: 133 YPGHIACDSLSKSEIVVPLVIPRTRLAHVHQNALQQQSPLNQATPVDGDDRSWAGRGDAQ 192 Query: 118 --IIGVLDIDSTVFGRFTDEDEQGLRQL 143 IIGVLDID F EDE LR + Sbjct: 193 DIIIGVLDIDCESLDGFDQEDETRLRTI 220 >UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF04_KOSOT Length = 318 Score = 92.0 bits (227), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 51/130 (39%), Positives = 73/130 (56%), Gaps = 3/130 (2%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK-IACVRIPVGRGVCG 77 E F L LL +T NW GFYL ++D TL+LGPF G+ VRI G+G+CG Sbjct: 185 EKEFDEKLKTIVKLLDHYVTYYNWTGFYLTDEDEATLLLGPFVGEPTEHVRIKFGQGICG 244 Query: 78 TAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDE 137 A + + + DV +++C + SEIV+P++ N++IG LDIDS G FTD D Sbjct: 245 QAAEKKALFLVPDVSREANYLSCSPKTKSEIVVPILKGNKVIGELDIDSHSIGAFTDADS 304 Query: 138 QGLRQLVAQL 147 + L ++ L Sbjct: 305 EFLEKICKLL 314 >UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoanaerobacterales RepID=Q8R981_THETN Length = 156 Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 75/144 (52%), Gaps = 1/144 (0%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M K + + L + A T +L E + NW GFY ++D LV+GP+ Sbjct: 1 MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPY 60 Query: 61 QGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ VRI VG+GVCG AVA ++DV D ++AC + SEIV+P+ +II Sbjct: 61 IGRPTEHVRIKVGQGVCGRAVAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEII 120 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQL 143 G +DIDS F D+D+ L ++ Sbjct: 121 GEIDIDSDDLAAFDDKDKIFLEEV 144 >UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F3I2_THELT Length = 318 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 46/127 (36%), Positives = 72/127 (56%), Gaps = 4/127 (3%) Query: 27 TLANTSALLYERLTDINWAGFYLL---EDDTLVLGPFQGK-IACVRIPVGRGVCGTAVAR 82 ++ LLYE ++ NW GFYL E +TLVLGPF G+ V+IP G+G+CG A + Sbjct: 186 SMEEICNLLYENISYYNWVGFYLTDFDEKNTLVLGPFVGEPTEHVKIPFGKGICGQAAEK 245 Query: 83 NQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 142 ++DV +++C SEIV+P+++ I G LDIDS + F +DE L+ Sbjct: 246 KTTFIVQDVSKETNYLSCSPKVKSEIVVPIMIDGIIYGELDIDSHISNAFDKDDELFLKN 305 Query: 143 LVAQLEK 149 + ++ + Sbjct: 306 ICDKISQ 312 >UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH36_PETMO Length = 315 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 6/127 (4%) Query: 26 ATLANTSALLYERLTDINWAGFYLL---EDDTLVLGPFQGK-IACVRIPVGRGVCGTAVA 81 + L S LL ER+ NW GFYL+ ED++LVLGPF G+ +I G+G+CG A + Sbjct: 184 SILKLISQLLAERIPYYNWVGFYLVDETEDNSLVLGPFVGEPTEHTKIKFGQGICGQAAS 243 Query: 82 RNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGL 140 ++DV D +++C + SEIV+P+ KN I+G +DIDS F D+D++ Sbjct: 244 TKTTFVVDDVSKEDNYLSCSPKTQSEIVVPIFDKNGNIVGEIDIDSHEKAPF-DQDDRSF 302 Query: 141 RQLVAQL 147 + +A+L Sbjct: 303 LEAIAKL 309 >UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RC53_AJECN Length = 133 Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 25/128 (19%) Query: 24 FLATLANTSALLYERL-------TDINWAGFYLLED------------------DTLVLG 58 ++ LAN S+LL+ + +NWAGFY+ +D L+L Sbjct: 1 MVSNLANVSSLLWHAYAALPAPSSAVNWAGFYVRQDRFPSLVSAGSNTKETPGTQALLLD 60 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 PF GK AC I GRGVCGTA + + + DV ++GHIACDA S SEIV+P++V + Sbjct: 61 PFHGKPACQLIQFGRGVCGTAAEKQETVLVPDVFNWEGHIACDAESKSEIVVPILVNGES 120 Query: 119 IGVLDIDS 126 + + S Sbjct: 121 VNLWQHGS 128 >UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IN96_ACIBL Length = 163 Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 72/134 (53%), Gaps = 19/134 (14%) Query: 22 TSFLATLANTSALLYERLTDI-----------NWAGFYLLE-------DDTLVLGPFQG- 62 T+ L T+A T+ + + +TDI NW GFY++E D LVLGP+ G Sbjct: 11 TAQLKTMAETAPTVEDLMTDIVGRLQQYLPHYNWVGFYMIEKSLLPGVDPVLVLGPYVGA 70 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 RIP+ G+CG AV ++DV+ ++AC + SEIV+P+ +K +I+G L Sbjct: 71 PTTHTRIPLNEGICGAAVTTGDTVIVDDVNSDPRYLACSLETKSEIVVPIRMKGEIVGEL 130 Query: 123 DIDSTVFGRFTDED 136 DIDS F DED Sbjct: 131 DIDSHDAAAFGDED 144 >UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=B7RB60_9THEM Length = 309 Score = 85.1 bits (209), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E++ L ++ ++ L L L ++ +W GFY +ED L LGPF G Sbjct: 163 KKEYFDSLLKEIEKILERGKEALGDLCK---FLRNHVSYYDWVGFYFVEDGKLKLGPFVG 219 Query: 63 K-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + V IP G G+CG A R + ++DV +++C + +EIV+P+ +IIG Sbjct: 220 EPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPIFKDGKIIGE 279 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS F++ED L ++ + KV+ Sbjct: 280 LDIDSYSPSPFSEEDRAFLEKVCELVSKVV 309 >UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 Tax=Bacteroidetes RepID=A5FJZ4_FLAJ1 Length = 151 Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 52/120 (43%), Positives = 65/120 (54%), Gaps = 6/120 (5%) Query: 34 LLYERLTDINWAGFYL--LEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIED 90 LL E + NW GFY LE+ TL LGP+ G + IP G+G+CG N + D Sbjct: 31 LLNENVEYYNWVGFYFANLENKTLHLGPYVGAETDHTVIPFGKGICGQVAESNANFVVPD 90 Query: 91 VHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLR---QLVAQL 147 V D +IAC SEIV+PL V IG +DIDS V FT+ DE+ L Q VA+L Sbjct: 91 VKAQDNYIACSLTVKSEIVVPLFVNGVNIGQIDIDSHVIDPFTEADERFLEFVNQEVAKL 150 >UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CKR5_PARTE Length = 163 Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/151 (35%), Positives = 79/151 (52%), Gaps = 22/151 (14%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV---------L 57 Y +L R+ A ETS ++ L N +T + + GFY + D L+ + Sbjct: 24 YQNLGRN-----AIETSIVSLLKNN-------VTGLFFVGFYQVIDGILIDSILDNHLEV 71 Query: 58 GPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 GP+Q I A RI G+G CG A +VQ EDV V +IACD + SEIV+P++ Sbjct: 72 GPYQSTILATPRIEKGKGQCGQCWAEGKVQIQEDVKVCQNYIACDNETQSEIVIPVIKNG 131 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 ++ VLDIDS RF + D + L+++V L Sbjct: 132 VVLSVLDIDSEHLSRFDEVDSKYLQRIVEYL 162 >UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187DAE5 Length = 216 Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 83/196 (42%), Gaps = 49/196 (25%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLY------------ERLTDINWAG---- 46 K EF+A + L+ G+ S++ A+ S+L+Y + +NW G Sbjct: 14 KAEFWAHVATQLQHLLDGQRSWVTNTASASSLIYFSLQAFPAFFGPDETKAVNWVGKKGH 73 Query: 47 FYLLEDDT----------------------------LVLGPFQGKIAC--VRIPVGR--- 73 F + E D L+LGPF GK AC + + G+ Sbjct: 74 FSMSEHDQILTGIPNTGVYIDSKYFPPSQDSNSAARLLLGPFCGKPACQFINVNPGKKNP 133 Query: 74 GVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFT 133 GVC + + DV + GHIAC AA+ SEIV PL +GVLD+D G F Sbjct: 134 GVCADGFIHGKSLLVPDVDQYPGHIACFAATKSEIVCPLFDGETPVGVLDLDCLALGGFD 193 Query: 134 DEDEQGLRQLVAQLEK 149 +ED+ GL + + K Sbjct: 194 EEDKIGLDKCAEIISK 209 >UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNM9_ALKMQ Length = 155 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 1/150 (0%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E + L + AL++ E LL + NW GFY++E+ LVLG + G Sbjct: 6 KKELFLRLEKKAFALISKEEQLDNVYQGIVELLDNNIPYYNWTGFYMIENGELVLGHYLG 65 Query: 63 -KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 I +G+G+CG A R + ++DV ++AC + SEIV+P++ + ++G Sbjct: 66 AHTDHTHIQIGQGICGQAADRKETFIVDDVTKETNYLACSFETASEIVVPILKGDDVLGE 125 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +DIDS F D+ L + A+L + L Sbjct: 126 IDIDSHEPSAFDSLDQHLLESICAKLAERL 155 >UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HLN1_FERNB Length = 778 Score = 77.4 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 44/117 (37%), Positives = 66/117 (56%), Gaps = 3/117 (2%) Query: 34 LLYERLTDINWAGFYLLEDD-TLVLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDV 91 LL E + NW GFYL++D+ LVLGP+ G+ VRIPVG+G+CG A ++DV Sbjct: 183 LLDEHVPYYNWTGFYLMDDEGMLVLGPYVGEPTEHVRIPVGKGICGQAADTKLTFIVQDV 242 Query: 92 HVFDGHIACDAASNSEIVLPLVVKN-QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 +++C SEIV+P+ + + G +DIDS F + D++ L + QL Sbjct: 243 SQETNYLSCSPHVKSEIVVPIFRNDGSVFGEIDIDSHYIAPFDNRDKEFLEWIAKQL 299 >UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBA2A Length = 174 Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 10/101 (9%) Query: 55 LVLGPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 L +GP+Q I A RI +G+GVCGTA + Q + +V +IACD + SE+V+P+ Sbjct: 77 LEVGPYQSTILATPRIAIGKGVCGTAWQEAKTQVVNNVKECKNYIACDNETLSEVVIPVF 136 Query: 114 VK--NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 K N+++ V DIDST RFT D V QLEK+ A Sbjct: 137 NKTTNEVVAVFDIDSTTLNRFTPFD-------VEQLEKITA 170 >UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4_THERP Length = 164 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 2/111 (1%) Query: 43 NWAGFYLLEDDTLVLGPFQGKIAC--VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC 100 +W G YL+E D LVL + G A VRIP+G+G+CG A Q + DV ++ C Sbjct: 46 DWVGIYLVEGDELVLAAWSGPAATEHVRIPIGQGICGAAAREGQTIIVPDVRQDPRYLQC 105 Query: 101 DAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++ SEIV+P+ +IG +DIDS F ++D L L ++L + L Sbjct: 106 FLSTRSEIVVPIRQDEDVIGEIDIDSDELAAFDEKDRALLEWLASELAERL 156 >UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMS7_THEM4 Length = 304 Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 71/131 (54%), Gaps = 2/131 (1%) Query: 26 ATLANTSALLYERLTDINWAGFYLLEDDTLV-LGPFQGK-IACVRIPVGRGVCGTAVARN 83 + + +LY+++ NW GFY++ D+ L+ L F G+ V+I +G G+CG A Sbjct: 173 SYMRKACEILYDKIPYYNWVGFYMINDEGLLELYDFVGEPTEHVKIKIGEGICGQAANLK 232 Query: 84 QVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQL 143 + ++DV +++C SEIV+P+ +++IG LDIDS F D+Q L+++ Sbjct: 233 RTFIVQDVSKETNYLSCSPKVKSEIVVPIFNNSEVIGELDIDSHYISPFDLRDDQFLKKI 292 Query: 144 VAQLEKVLATT 154 ++ ++ Sbjct: 293 CIRVSEIWKNK 303 >UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7ID90_THEAB Length = 312 Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 64/118 (54%), Gaps = 2/118 (1%) Query: 35 LYERLTDINWAGFYLL-EDDTLVLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVH 92 LY+ + +W GFY++ +D+ L L F G+ V+I +G G+CG A V ++DV Sbjct: 186 LYDEIPYYDWVGFYMINKDNVLELFEFVGEPTEHVKINIGEGICGQAAMLKDVFIVQDVS 245 Query: 93 VFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKV 150 +++C SEIV+P+ ++IG LDIDS F + D + L ++ + K+ Sbjct: 246 KETNYLSCSPKVKSEIVVPIFKNKEVIGELDIDSHYITPFDERDRKFLEKVCEDIPKI 303 >UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=Thermoplasma acidophilum RepID=Q9HJW5_THEAC Length = 141 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 59/110 (53%), Gaps = 1/110 (0%) Query: 35 LYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHV 93 L E+ +W GFY+LE L L F G K V I +G G+C AV +N + DV Sbjct: 18 LKEKNPKYDWVGFYVLEHGKLKLEAFVGEKTDHVEINLGDGLCSLAVLKNDIVNEYDVKS 77 Query: 94 FDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQL 143 ++AC ++ SEIV+P+ + + IG +DIDS F+ EDE L + Sbjct: 78 NPKYLACFPSTQSEIVVPVRYQGEPIGEIDIDSDKKAAFSKEDEAMLSSI 127 >UniRef50_UPI000190977C putative GAF sensor protein n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI000190977C Length = 126 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPF 60 +K FY +L L+ GE +A AN SAL+++ + D+NWAGFY L ++ LVLGPF Sbjct: 60 DKRAFYRELAGQLQGLLEGERDAVANAANLSALVFDLVPDLNWAGFYFLRSENELVLGPF 119 Query: 61 QGKIACV 67 QG++ACV Sbjct: 120 QGRVACV 126 >UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermoplasmatales RepID=Q6L0D7_PICTO Length = 145 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 60/111 (54%), Gaps = 1/111 (0%) Query: 43 NWAGFYLLEDDTLVLGPFQGKIACVRI-PVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW G Y++ + L L + GK I +G G+C AV + + DV ++AC Sbjct: 31 NWVGVYVVNNGNLSLISYSGKRTEHEIINLGSGLCSLAVTKRMIINEGDVRSNSDYLACF 90 Query: 102 AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 +NSE+V+P+ N+IIG +DIDS F ++DE+ + + + ++++ Sbjct: 91 PETNSELVVPIEYDNKIIGEIDIDSDKKSAFNEDDERYISDICNYIARLVS 141 >UniRef50_D1Y7A2 GAF domain protein (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7A2_9BACT Length = 86 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/77 (46%), Positives = 43/77 (55%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + K E Y ++ AL A E LA L N A LY + +NW G YLL LVLGPF Sbjct: 10 LTKDERYRLISARLAALAAAERDPLANLCNFMAYLYWTVGGVNWVGLYLLRGGELVLGPF 69 Query: 61 QGKIACVRIPVGRGVCG 77 GK AC R+ G+GVCG Sbjct: 70 AGKPACSRLAPGKGVCG 86 >UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q1IL10_ACIBL Length = 584 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 50/79 (63%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 IP+GRG+ G AV +N+ + DV +I + + SE+ +PLV K ++IGVLD++ T Sbjct: 241 IPLGRGLVGYAVGKNEAVLVPDVRKDSRYIMLNPETRSELAVPLVYKGKVIGVLDLEHTK 300 Query: 129 FGRFTDEDEQGLRQLVAQL 147 G FT++ ++ L L AQ+ Sbjct: 301 RGFFTEDHKRTLTTLAAQI 319 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 43/77 (55%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 I RI +G+G+ G A + + DV +I + SE+ +P++VKN++IGV+D Sbjct: 72 IERTRIKIGQGITGAAAQTREPVLVNDVSKHPEYITSVSDVRSELAIPMIVKNKVIGVID 131 Query: 124 IDSTVFGRFTDEDEQGL 140 I++ FT+E + L Sbjct: 132 IEAPQKNYFTEEHSRLL 148 >UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HH02_ANADF Length = 153 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 37 ERLTDINWAGFYLLEDDTLVLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFD 95 +RL Y+L D L L F G+ VRIPVG+G+CG + +V ++DV Sbjct: 37 QRLPRYTGVYLYVLRGDVLELDAFAGRETPHVRIPVGQGLCGLSARTREVVLVDDVAADP 96 Query: 96 GHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++AC+ + SEIV P++ + + +D+DS F D L + A LE V Sbjct: 97 RYLACNLETRSEIVFPILRGERYLAQIDVDSDHPAAFRTGDRAFLAEAAAILEPVF 152 >UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTU0_9FIRM Length = 491 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 55/106 (51%) Query: 51 EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 E L + +G VRIP+G+G+ G A Q+ + DV +I SE+ + Sbjct: 208 ERQELTIKAHRGYSNNVRIPLGKGITGYAALTGQLIYVPDVRHDPRYIKGTHDGVSEVAV 267 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 PL+V N+IIGVLD+++ R D D LR L +Q+ +A ++ Sbjct: 268 PLIVNNEIIGVLDVETNQAKRLQDYDLDLLRSLASQISMTIAHANH 313 >UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025X3_SOLUE Length = 581 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 +P+G+G+ G A +V R+ D +IA A SE+ +PL+++++++GV+D++S Sbjct: 247 VPLGKGLTGAAAESREVVRVHDTAKDPRYIASHADIRSEVAVPLILQDRVVGVMDLESDR 306 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 G F D+ + L L Q V ++ + + +A +A Sbjct: 307 VGYFNDDQVRTLALLAPQ---VASSVENARLYAELA 339 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 43/79 (54%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 I G G+ GTA AR + + DV ++ A +E+ +P+ + +++GV+D+ ST Sbjct: 84 IAEGEGITGTAAARREPVLVSDVRNDPRYLNTVDAVRTELAVPMTARGKLVGVIDLQSTR 143 Query: 129 FGRFTDEDEQGLRQLVAQL 147 +T+ D +R + A++ Sbjct: 144 VDAYTEYDRALMRLIAARV 162 >UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z996_9GAMM Length = 607 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 24/123 (19%) Query: 38 RLTDINWA---------GF-----YLLEDDTLVL---------GPFQGKI-ACVRIPVGR 73 +L DI W GF YL+ DD L+L P +I + IPVG+ Sbjct: 36 KLEDIVWNIAKTAIAELGFEDCVVYLIADDGLMLKQVAAHGPKNPVDREIFNEITIPVGQ 95 Query: 74 GVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFT 133 G+ G +VQRI+D + +I D SE+ +P+ +IIGVLD + FT Sbjct: 96 GIVGHVAQTGEVQRIDDARLDPRYIEDDDFRLSELAVPISHDGRIIGVLDSEHHAAKFFT 155 Query: 134 DED 136 DED Sbjct: 156 DED 158 >UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAG3_SPHTD Length = 1113 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 9/141 (6%) Query: 17 LMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLGPFQGKIACVRIPVGR 73 ++ G T A + + + LL R + YL++ +T L P G + VR+P G+ Sbjct: 796 MIGGVTDLSAFITDVTDLL-RREIGVGHLELYLVDPETGDLLGQTPGPGAVTGVRVPAGQ 854 Query: 74 GVCGTAVARNQVQ-RIEDVHVFDGHIACDAAS--NSEIVLPLVVKNQIIGVLDIDSTVFG 130 G+ G VAR Q R+ D H D A S S + +PL + + IGV+ ++S G Sbjct: 855 GLVGW-VARYQTPARVADTH-NDVRTMSMATSPMRSALAVPLAIDGRTIGVISLESRRVG 912 Query: 131 RFTDEDEQGLRQLVAQLEKVL 151 FT+ DE L + QL +V+ Sbjct: 913 VFTENDEALLTIIAQQLAQVI 933 >UniRef50_C4XDM2 Putative uncharacterized protein n=2 Tax=Klebsiella pneumoniae RepID=C4XDM2_KLEPN Length = 67 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 24/42 (57%), Positives = 31/42 (73%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDI 42 MN Y DL RD ++LMAGETSF+ +ANTS+LLY R+ +I Sbjct: 1 MNTDFSYRDLFRDLSSLMAGETSFVTMMANTSSLLYNRMENI 42 >UniRef50_D2TVU1 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TVU1_9ENTR Length = 58 Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 33/58 (56%) Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 + LG F+ K+ + + G N+VQRI DVH F GHI CD+ S SE VLPL Sbjct: 1 MCLGLFRVKLHVCVLRKEKVFVGPLFIENRVQRIADVHSFAGHITCDSLSRSERVLPL 58 >UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Shewanella loihica PV-4 RepID=A3QE18_SHELP Length = 790 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 40/75 (53%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 +A + + +G GV GT Q + D +F +I DA SE+ +P++++ ++IGV+D Sbjct: 80 LAPIELKLGEGVVGTVAKTKQPLNVTDTRLFPNYIVDDAPRLSELAVPMLMEGEVIGVID 139 Query: 124 IDSTVFGRFTDEDEQ 138 + +T E+ Sbjct: 140 TEHPKKNFYTPHHER 154 >UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VRP5_DYAFD Length = 1182 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 10/86 (11%) Query: 48 YLLEDDTLVL------GPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH 97 YLL+ +T L GP K + + IPVG G+ GTA A Q I D + Sbjct: 829 YLLDKETNTLIQKAAYGPKSPKEYEILNPIEIPVGEGIVGTAAATGLPQIIGDTSKDPRY 888 Query: 98 IACDAASNSEIVLPLVVKNQIIGVLD 123 I D A SE+ +P++ + Q+IGV+D Sbjct: 889 IIDDQARFSELAVPILHEGQVIGVID 914 >UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S) n=5 Tax=Chloroflexaceae RepID=A5UV89_ROSS1 Length = 1017 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 G G+ G+ Q + DV +I+ D+++ +E+ +PL ++IGVLDI S GR Sbjct: 479 GEGIVGSVALTGQPALVNDVRTDPRYISDDSSTRAELAVPLRYAEKVIGVLDIQSAEAGR 538 Query: 132 FTDED 136 F D Sbjct: 539 FQRSD 543 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 45.4 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 ++ +G+G+ G A + + + + DV +I SE+V P++V++ IIGV+ +DS Sbjct: 74 KLKIGQGITGMAASTGKAKLVNDVSKDPDYIQVKEEIKSELVAPMIVEDDIIGVISLDSN 133 Query: 128 VFGRFTDE 135 FT E Sbjct: 134 RLNAFTPE 141 >UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHX7_ACIBL Length = 499 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 3/99 (3%) Query: 42 INWAGFYLLEDDTLVLG---PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI 98 + A L + D VL F + + + +P+G+G+ G AV + + DV +I Sbjct: 43 LEGASVLLFDKDRTVLRVRLSFGKQPSSMEVPLGKGLTGAAVHQKRPIYSPDVTKDKRYI 102 Query: 99 ACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDE 137 ++ SE+ +PL+V+++++GVLD S F E E Sbjct: 103 CAVESTRSELAIPLMVRDEVVGVLDCQSDQVDFFDTETE 141 >UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1I0_HERA2 Length = 1877 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKNQIIGVLDID 125 RIP GRG+ G A V + DV G +A + +EI +P+++ ++++GVLD+ Sbjct: 663 RIPQGRGLVGRAANTKDVVLVPDVSREAGWLANPLLPETKAEIAVPIMLGDEVLGVLDVQ 722 Query: 126 STVFGRFTDEDEQGLRQLVAQL 147 + T++D L+ + AQ+ Sbjct: 723 NAEVNSLTNDDATLLQSIAAQV 744 >UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HS12_9SPHI Length = 399 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 13/111 (11%) Query: 45 AGFYLLED------DTLVLGPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVF 94 A YLL+D +GP I ++I VG G+ G A + ++D Sbjct: 51 AVIYLLDDKGEYLEQKAAIGPKNPNGTAIINTIKIKVGEGITGKVAATSLPIIVDDTRTN 110 Query: 95 DGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 + +I D+ SEI +P++++ ++IGV+D +++ F+D Q L+ L+A Sbjct: 111 EDYIKDDSFRLSEIAVPIMLEGKVIGVIDSENSQANYFSD---QHLKILLA 158 >UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1A0_HERA2 Length = 677 Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 5/86 (5%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVH---VFDGHIACDAA--SNSEIVLPLVVKNQ 117 K+A VR+P G+G+ G A+ Q + D F ++ D + S + +P++VKN+ Sbjct: 228 KLAGVRVPPGQGLVGAAITTRQPVVVLDAQNDPRFYRRVSEDVGFVTRSVLCVPMLVKNR 287 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQL 143 IGV+ + + + G F ED Q L+ + Sbjct: 288 EIGVIQLLNKLEGVFNTEDTQRLQAM 313 >UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IM31_ACIBL Length = 612 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHV---FDGHIACDAASNSEIVLPLVVK---NQIIG 120 +R+P GRGV G +V + D + FD ++ +L L ++ N+I+G Sbjct: 240 LRVPFGRGVAGRVAETGEVINVADAYTLPFFDRSFDQKTGYTTKSLLCLPIRHHNNEIVG 299 Query: 121 VLD-IDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 VL ++ + GRFT ED++ L +L + L Sbjct: 300 VLQLLNQSTHGRFTPEDQEFLTKLTGHMAMAL 331 >UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LX99_HALO1 Length = 547 Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust. Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 24/176 (13%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +++ E +L D A++A E L L T L + A +L++ T G Sbjct: 13 VSEGELKQELLSDLGAMIAREVE-LDELLKTFGLRVAEALGADRATLWLVDART---GEL 68 Query: 61 QGKIACV------RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA------ASNSEI 108 + ++A + R+P+GRGV G R +V I D D A + + S + Sbjct: 69 RSRVANLLELDELRMPIGRGVAGYVAQRAEVVNIRDA-ASDQRWAPEIDQRTGYRTRSML 127 Query: 109 VLPLV-------VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 +P+V +++ GV+ + + G FT DE+ LR+L Q+ + LA T + Sbjct: 128 CVPVVEPGDRGAAPDRLRGVVQVLNKDEGAFTQADERFLRELAQQITRALAYTSLR 183 >UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S) n=2 Tax=Roseiflexus RepID=A7NMZ1_ROSCS Length = 961 Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 34/67 (50%), Gaps = 6/67 (8%) Query: 74 GVCGTAVARNQVQRIEDVHVFDGHIACDAAS----NSEIVLPLVVKNQIIGVLDIDSTVF 129 G V Q IEDV V HI S I +PL+VK +++GVL+IDST Sbjct: 622 GAAVWVVHHKQPLLIEDVSV--SHIWAPKPQISNIQSWIGVPLLVKGEVLGVLNIDSTQK 679 Query: 130 GRFTDED 136 GRFT D Sbjct: 680 GRFTQRD 686 >UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9WFK4_CHLAA Length = 545 Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 9/130 (6%) Query: 25 LATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACVRIPVGRGVCGTAVAR 82 LA+L N L ++ ++L+++T LVL G+ R+P RG+ G V Sbjct: 182 LASLLNDIKLRAPKVVGAERCSIFILDEETNELVL-EIPGEQRQYRMPADRGIAGWVVTH 240 Query: 83 NQVQRIEDV----HVFDG-HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR-FTDED 136 Q + DV +D D + S + +P+ VK+++IG + + + G+ FTD+D Sbjct: 241 GVGQIVNDVEHDPRWYDAISREADFVTRSIVCVPMRVKDRVIGAMQLLNKANGQPFTDQD 300 Query: 137 EQGLRQLVAQ 146 Q L L AQ Sbjct: 301 MQLLTTLAAQ 310 >UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=B9XEL2_9BACT Length = 580 Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 45/90 (50%) Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 A +++ VG G+ G + + R DV +I SE+ +P++V +I GV+++ Sbjct: 83 AALKLRVGEGITGWVAIKGKTVRSGDVTQDPRYIQLRQNVRSELAVPMLVNGEIRGVINV 142 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 DS F++ D++ L L +V+ T Sbjct: 143 DSDRNNAFSEGDQELLEALALSASRVIQNT 172 >UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geobacter RepID=C6E9C6_GEOSM Length = 713 Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 6/80 (7%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA----ASNSEIVLPLVVKNQIIGV 121 C+ + VG+G+ G Q I DV D +A S S I +PL +K++IIGV Sbjct: 408 CLPVKVGKGIAGMVAQSGQPLLINDVEK-DSRVAMANRLRFKSKSLICMPLKLKDKIIGV 466 Query: 122 LDI-DSTVFGRFTDEDEQGL 140 L++ D FTD D Q L Sbjct: 467 LNLSDKKNLAPFTDADLQVL 486 >UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVW4_DYAFD Length = 1192 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 + + +G G+ GTA + I D +IA DA+ SE+ +P++ + ++IGVLD + Sbjct: 868 LELELGMGIVGTAGKTKRAINISDTSRDPRYIAMDASKFSEVAVPILHEGKLIGVLDSEH 927 Query: 127 TVFGRFTDEDEQGL 140 + FT++ + L Sbjct: 928 SEKRFFTEDHTRAL 941 >UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1_CHLAD Length = 2783 Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV----LPLVVKNQIIGVL 122 +R+P+G+G G Q IEDV+ G + + + ++ +P++ + QIIGVL Sbjct: 1601 MRVPIGQGFTGRVAETGQPLIIEDVNEEGGSLYPNYQQRNNLISFMGVPVIYREQIIGVL 1660 Query: 123 DIDSTVFGRFTDED 136 + + RFT+++ Sbjct: 1661 SVMTNYRRRFTNDE 1674 >UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subunit n=4 Tax=Leptospira RepID=Q051Q5_LEPBL Length = 936 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 15/102 (14%) Query: 49 LLEDDT-------LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 LL DDT VLG + ++ +R+PVG+GV G V + I D D + + Sbjct: 239 LLLDDTKEYLYFHTVLGEKRDEVTRIRVPVGKGVAGMVVRDKKPMIINDA-TNDPRVYRE 297 Query: 102 AASNSEIVL------PLVVKNQIIGVLDIDSTV-FGRFTDED 136 S V PL+V+ Q+IGV++ +T+ FT+ED Sbjct: 298 VDKASHFVTRNIMAAPLLVEGQVIGVIEAINTIDRTSFTEED 339 >UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3A2_HERA2 Length = 995 Score = 40.4 bits (93), Expect = 0.020, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 7/92 (7%) Query: 59 PF---QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK 115 PF QGK R+P+G G+ G + + DV + +E+ +P+ V Sbjct: 467 PFWQRQGK----RLPLGLGIVGHVAVTGEPMLVNDVREEPRFLPDQHGIAAELAVPMRVG 522 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 Q++GVLD+ S +G F + D ++ L Q+ Sbjct: 523 QQLLGVLDVQSESYGAFDENDFFVVQTLADQI 554 >UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Roseiflexus RepID=A5UX58_ROSS1 Length = 785 Score = 40.4 bits (93), Expect = 0.021, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 1/102 (0%) Query: 47 FYLLEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN 105 YL + D L L G + RIP GRGV + + I DV I Sbjct: 304 LYLRDGDELALQHQVGYAVQLDRIPFGRGVISRTILSGRATLIADVRSDPDFIGVMDNIV 363 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 SEI +PL ++++IG L+I+ST TD+D + + +L + Sbjct: 364 SEICVPLRDQDRVIGALNIESTDSVVLTDDDLRVMTELAEHI 405 >UniRef50_D1C8Q9 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8Q9_SPHTD Length = 747 Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 +R P+ RG+ G A+ N+ + DV +I D A SE+V + + +GVL+I+ Sbjct: 486 ALRWPIDRGITGRALRENRSLLVHDVRSDPDYIEIDPAIRSELVAVIRSAGRPVGVLNIE 545 Query: 126 STVFGRFTDED 136 + + D+D Sbjct: 546 TDISHPLDDQD 556 >UniRef50_B2IXL1 Putative GAF sensor protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2IXL1_NOSP7 Length = 215 Score = 39.3 bits (90), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 23/152 (15%) Query: 12 RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC----- 66 R +NA++A E + T + + RL + W Y+ D +L P +++ Sbjct: 15 RGWNAVVASEQNGTKTRLTAT---FNRL--LEWLRDYMSVDTVTLLLPIADRLSLAVQAT 69 Query: 67 ----------VRIPVGRGVCGTAVARNQVQRIEDVHVFD--GHIACDAASNSEIVLPLVV 114 +RIP+G+G+ G A + + ++ + I S + +PL V Sbjct: 70 IGLEEEITQQIRIPIGQGIAGHIAASVEPMMVNNLSAVEVVSPILHQKGLQSLVGVPLPV 129 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 + +IGVL + + FT+ D Q L QL+A Sbjct: 130 EEGVIGVLHVGNFKSHNFTERDVQQL-QLIAH 160 >UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3A8_9GAMM Length = 635 Score = 38.9 bits (89), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Query: 59 PFQGKIAC-VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQ 117 P Q IA ++I VG GV G + Q I D +I D SE+ +P+ + + Sbjct: 111 PDQRLIASPLKIKVGEGVVGHVACTGEAQIISDTRQDSRYILDDEFRLSELAVPITHQER 170 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 +IGVLD + F+ ED Q + + A Sbjct: 171 VIGVLDSEHPDADFFSTEDVQLFKTIAA 198 >UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UTQ7_ROSS1 Length = 711 Score = 38.5 bits (88), Expect = 0.078, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 5/88 (5%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHV---FDGHI--ACDAASNSEIVLPLVVKNQ 117 K+A R+P G+GV G V + + + DV F I A ++ S + +P++ K + Sbjct: 242 KLAGFRVPAGQGVVGHVVRTGRWEIVHDVSRDPRFYRQISEATGFSTRSILCVPMIAKGR 301 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 +IG +++ + + G F +ED L ++ A Sbjct: 302 VIGAIELLNKIGGDFDEEDALRLMRMAA 329 >UniRef50_B3E0S0 Sensor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0S0_METI4 Length = 513 Score = 38.5 bits (88), Expect = 0.081, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFG 130 VG G+ G + RI+DV +++ D SE+ +P+ ++ IIGVL++DS Sbjct: 21 VGEGITGWVATSGKPMRIDDVSKDWRYVSIDPRIQSELAVPIEWQSTIIGVLNVDSHEKS 80 Query: 131 RFTDE 135 +T E Sbjct: 81 HYTLE 85 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YE... 254 8e-67 UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms R... 244 9e-64 UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q... 223 1e-57 UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales Re... 218 4e-56 UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonad... 218 5e-56 UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1... 217 1e-55 UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria ... 215 4e-55 UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG... 214 8e-55 UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_L... 212 4e-54 UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwell... 211 7e-54 UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellula... 207 9e-53 UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli R... 206 2e-52 UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellov... 206 2e-52 UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 205 4e-52 UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC ... 205 4e-52 UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9P... 205 5e-52 UniRef50_A6L6E7 GAF domain-containing protein involved in signal... 204 1e-51 UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdema... 202 4e-51 UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B... 201 5e-51 UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria... 201 5e-51 UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobili... 200 1e-50 UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium pa... 200 2e-50 UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=... 199 2e-50 UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria Rep... 197 1e-49 UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10... 196 2e-49 UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria ... 196 2e-49 UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6... 196 2e-49 UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria R... 196 3e-49 UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobact... 196 3e-49 UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostr... 195 3e-49 UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptoco... 195 4e-49 UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridiu... 195 4e-49 UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idio... 194 1e-48 UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodob... 193 1e-48 UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured... 193 3e-48 UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobac... 192 3e-48 UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=L... 191 6e-48 UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DS... 190 1e-47 UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobaci... 190 2e-47 UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypano... 190 2e-47 UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 188 6e-47 UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaprot... 188 7e-47 UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacter... 188 7e-47 UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteri... 188 8e-47 UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellula... 186 2e-46 UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishma... 185 5e-46 UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX... 184 1e-45 UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax... 183 2e-45 UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepI... 183 2e-45 UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extr... 182 4e-45 UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Aj... 182 4e-45 UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobact... 181 6e-45 UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms Re... 180 1e-44 UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoan... 179 3e-44 UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycopla... 178 4e-44 UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacte... 177 1e-43 UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroh... 176 2e-43 UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri D... 176 3e-43 UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptonip... 175 4e-43 UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=... 174 8e-43 UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobas... 174 8e-43 UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistip... 174 1e-42 UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholep... 173 2e-42 UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus... 173 3e-42 UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulf... 172 4e-42 UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytoph... 172 4e-42 UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2... 172 5e-42 UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga l... 171 5e-42 UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerot... 168 6e-41 UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum K... 165 4e-40 UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga ol... 164 8e-40 UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mo... 164 1e-39 UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4... 160 2e-38 UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nod... 158 4e-38 UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesente... 158 8e-38 UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus K... 157 1e-37 UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermos... 157 1e-37 UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 T... 154 1e-36 UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=M... 150 2e-35 UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus... 148 7e-35 UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilag... 146 2e-34 UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Ta... 146 2e-34 UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 ... 145 6e-34 UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome... 139 3e-32 UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=... 135 6e-31 UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellom... 132 4e-30 UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermopla... 131 7e-30 UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxoba... 126 3e-28 UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxyd... 117 1e-25 UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 ... 114 1e-24 UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphoh... 107 1e-22 UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q... 107 2e-22 UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter... 105 7e-22 UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacter... 104 8e-22 UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 104 1e-21 UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyad... 102 6e-21 UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein... 97 2e-19 UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S)... 97 2e-19 UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 95 6e-19 UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF s... 95 6e-19 UniRef50_D1Y7A2 GAF domain protein (Fragment) n=1 Tax=Pyramidoba... 93 3e-18 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 90 3e-17 UniRef50_UPI000190977C putative GAF sensor protein n=1 Tax=Rhizo... 90 4e-17 UniRef50_D2TVU1 Putative uncharacterized protein n=1 Tax=Arsenop... 75 8e-13 Sequences not found previously or not previously below threshold: UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase ... 102 5e-21 UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=... 94 2e-18 UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacter... 94 2e-18 UniRef50_Q1VQE8 Sensor protein n=1 Tax=Psychroflexus torquis ATC... 90 3e-17 UniRef50_A3JMI9 Sensor protein n=1 Tax=Rhodobacterales bacterium... 88 1e-16 UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Rose... 86 3e-16 UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 T... 85 6e-16 UniRef50_Q3IKM7 Putative orphan protein ; putative GGDEF protein... 84 2e-15 UniRef50_Q5SJL9 GGDEF domain protein n=4 Tax=Thermaceae RepID=Q5... 83 2e-15 UniRef50_B1ZYQ1 Sensor protein n=2 Tax=Opitutaceae RepID=B1ZYQ1_... 83 3e-15 UniRef50_A8UJB8 Sensor protein n=2 Tax=Flavobacteriales RepID=A8... 82 6e-15 UniRef50_A8UPH1 Putative orphan protein ; putative GGDEF protein... 79 5e-14 UniRef50_D1C7L1 Diguanylate cyclase and metal dependent phosphoh... 79 5e-14 UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S)... 78 2e-13 UniRef50_B5JLN9 Sensor protein n=1 Tax=Verrucomicrobiae bacteriu... 78 2e-13 UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase ... 77 2e-13 UniRef50_D1C8Q9 Diguanylate cyclase with PAS/PAC and GAF sensors... 76 4e-13 UniRef50_B8GBU0 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBU0... 75 6e-13 UniRef50_Q1VT20 Sensor protein n=2 Tax=Flavobacteriaceae RepID=Q... 74 1e-12 UniRef50_C7RAL6 Diguanylate cyclase/phosphodiesterase with PAS/P... 74 1e-12 UniRef50_D1B6W8 Diguanylate cyclase with GAF sensor n=1 Tax=Ther... 74 1e-12 UniRef50_B0SAB0 Transcriptional regulator n=2 Tax=Leptospira bif... 73 4e-12 UniRef50_B8G854 Sensor protein n=3 Tax=Chloroflexus RepID=B8G854... 72 5e-12 UniRef50_B3E0S0 Sensor protein n=1 Tax=Methylacidiphilum inferno... 71 2e-11 UniRef50_A7NNT0 Sensor protein n=2 Tax=Roseiflexus RepID=A7NNT0_... 71 2e-11 UniRef50_Q1K0H7 Sensor protein n=1 Tax=Desulfuromonas acetoxidan... 70 2e-11 UniRef50_Q7NWI5 Putative uncharacterized protein n=2 Tax=Chromob... 69 3e-11 UniRef50_C1XIF1 Diguanylate cyclase (GGDEF) domain-containing pr... 68 9e-11 UniRef50_A0Z7X2 Response regulator n=1 Tax=marine gamma proteoba... 68 1e-10 UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepI... 68 1e-10 UniRef50_A6LSE0 Diguanylate cyclase n=1 Tax=Clostridium beijerin... 67 2e-10 UniRef50_D2R587 Putative PAS/PAC sensor protein n=1 Tax=Pirellul... 66 3e-10 UniRef50_B1ZF40 Signal transduction histidine kinase n=1 Tax=Met... 66 4e-10 UniRef50_A2U1J4 Sensor protein n=1 Tax=Polaribacter sp. MED152 R... 66 5e-10 UniRef50_Q1IVB0 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 66 6e-10 UniRef50_B3E1R0 Diguanylate cyclase with GAF sensor n=1 Tax=Geob... 66 6e-10 UniRef50_A9B7Z7 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 65 7e-10 UniRef50_B9LIX5 Sensor protein n=4 Tax=Chloroflexus RepID=B9LIX5... 65 7e-10 UniRef50_B8G9Y3 Adenylate/guanylate cyclase with GAF sensor(S) n... 65 1e-09 UniRef50_B5YCA4 Ggdef domain/hd domain protein n=2 Tax=Dictyoglo... 65 1e-09 UniRef50_A8QBJ3 Putative uncharacterized protein n=1 Tax=Malasse... 64 1e-09 UniRef50_Q7UNP2 Probable sensor kinase n=2 Tax=Planctomycetaceae... 64 2e-09 UniRef50_A9B569 Metal dependent phosphohydrolase n=1 Tax=Herpeto... 64 2e-09 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 64 2e-09 UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geob... 64 2e-09 UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 63 3e-09 UniRef50_Q0BUK2 Phosphoenolpyruvate-protein phosphotransferase n... 63 3e-09 UniRef50_UPI00016C4C54 probable sensor kinase n=1 Tax=Gemmata ob... 63 3e-09 UniRef50_B9L460 Ggdef domain protein n=1 Tax=Thermomicrobium ros... 63 4e-09 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 63 4e-09 UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter... 63 5e-09 UniRef50_C7QGD6 Sensor protein n=5 Tax=Actinomycetales RepID=C7Q... 62 7e-09 UniRef50_A7HTY0 PTSINtr with GAF domain, PtsP n=5 Tax=Alphaprote... 62 8e-09 UniRef50_B3E4M8 Putative GAF sensor protein n=1 Tax=Geobacter lo... 61 9e-09 UniRef50_B5YIS1 Hamp domain/gaf domain/hd domain protein n=1 Tax... 61 1e-08 UniRef50_B1ZLF4 Signal transduction histidine kinase n=1 Tax=Met... 61 1e-08 UniRef50_B0S995 Serine phosphatase RsbU, regulator of sigma subu... 61 1e-08 UniRef50_D1C2G1 Signal transduction histidine kinase n=1 Tax=Sph... 61 2e-08 UniRef50_A9AXC8 Diguanylate cyclase n=1 Tax=Herpetosiphon aurant... 61 2e-08 UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis F... 61 2e-08 UniRef50_B3E3E2 Metal dependent phosphohydrolase n=2 Tax=Geobact... 61 2e-08 UniRef50_D0E8I3 Sensor protein n=1 Tax=uncultured bacterium HF13... 61 2e-08 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 60 2e-08 UniRef50_B9KXS9 Probable two component sensor kinase n=1 Tax=The... 60 2e-08 UniRef50_C0QF51 Pdp n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 60 3e-08 UniRef50_Q2SHY3 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCT... 59 4e-08 UniRef50_A9B4G5 Multi-sensor signal transduction histidine kinas... 59 7e-08 UniRef50_A5FX95 PTSINtr with GAF domain, PtsP n=1 Tax=Acidiphili... 59 7e-08 UniRef50_A9B3V8 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 58 8e-08 UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9... 58 8e-08 UniRef50_Q04VG8 Response regulator with GGDEF domain n=4 Tax=Lep... 58 8e-08 UniRef50_Q3IED6 Putative uncharacterized protein n=1 Tax=Pseudoa... 58 9e-08 UniRef50_C6MUF5 Diguanylate cyclase with GAF sensor n=1 Tax=Geob... 58 1e-07 UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1... 58 1e-07 UniRef50_B5YEI3 Metal dependent phosphohydrolase n=1 Tax=Dictyog... 58 1e-07 UniRef50_A9AWZ3 Adenylate/guanylate cyclase with GAF sensor(S) n... 58 1e-07 UniRef50_C8WEG8 PTSINtr with GAF domain, PtsP n=11 Tax=Sphingomo... 58 1e-07 UniRef50_Q67MH3 Conserved domain protein n=1 Tax=Symbiobacterium... 58 1e-07 UniRef50_Q1K190 PTSINtr with GAF domain, PtsP n=1 Tax=Desulfurom... 58 1e-07 UniRef50_A0LL31 Serine phosphatase n=1 Tax=Syntrophobacter fumar... 58 1e-07 UniRef50_B0R429 Putative uncharacterized protein n=2 Tax=Halobac... 58 2e-07 UniRef50_Q1PXD5 Putative uncharacterized protein n=1 Tax=Candida... 58 2e-07 UniRef50_A7NI58 Sensor protein n=3 Tax=Bacteria RepID=A7NI58_ROSCS 58 2e-07 UniRef50_Q72KR9 Sensory transduction histidine kinase n=1 Tax=Th... 57 2e-07 UniRef50_A1ZR44 Serine/threonine kinase with GAF domain n=1 Tax=... 57 2e-07 UniRef50_B8G3P3 Sensor protein n=4 Tax=Chloroflexaceae RepID=B8G... 57 2e-07 UniRef50_Q1IKE0 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 57 2e-07 UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subu... 57 2e-07 UniRef50_A7NHH5 Sensor protein n=2 Tax=Roseiflexus RepID=A7NHH5_... 57 3e-07 UniRef50_A1R1B6 ANTAR domain protein n=2 Tax=Arthrobacter RepID=... 57 3e-07 UniRef50_Q3A855 Transcriptional regulator n=11 Tax=Desulfuromona... 56 3e-07 UniRef50_C1F1G0 GGDEF domain protein n=1 Tax=Acidobacterium caps... 56 3e-07 UniRef50_Q2K0G3 Hypothetical conserved protein n=2 Tax=Alphaprot... 56 3e-07 UniRef50_Q04QN3 Serine phosphatase RsbU, regulator of sigma subu... 56 3e-07 UniRef50_A9WCV4 GAF domain protein n=6 Tax=Chloroflexi (class) R... 56 4e-07 UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S)... 56 4e-07 UniRef50_A3ZU96 Probable two-component response regulator n=1 Ta... 56 4e-07 UniRef50_C6P0P3 Metal dependent phosphohydrolase n=1 Tax=Siderox... 56 4e-07 UniRef50_B5IEE2 Sensor protein n=3 Tax=cellular organisms RepID=... 56 5e-07 UniRef50_B9Z5D4 Diguanylate cyclase/phosphodiesterase with GAF s... 56 5e-07 UniRef50_B4UII9 Diguanylate cyclase n=3 Tax=Anaeromyxobacter Rep... 56 5e-07 UniRef50_D0LGB0 Sensor protein n=1 Tax=Haliangium ochraceum DSM ... 56 5e-07 UniRef50_A9AUY3 Sensor protein n=2 Tax=Bacteria RepID=A9AUY3_HERA2 56 6e-07 UniRef50_A7I8H7 Sensor protein n=1 Tax=Candidatus Methanoregula ... 56 6e-07 UniRef50_C5D1A1 Sensor protein n=1 Tax=Variovorax paradoxus S110... 56 6e-07 UniRef50_D1XIR6 Sensor protein n=4 Tax=Streptomyces RepID=D1XIR6... 56 6e-07 UniRef50_Q2SC53 Phosphotransferase system enzyme I PtsP n=2 Tax=... 56 6e-07 UniRef50_Q0A623 Putative GAF sensor protein n=1 Tax=Alkalilimnic... 55 6e-07 UniRef50_B5JVZ7 Phosphoenolpyruvate-protein phosphotransferase n... 55 7e-07 UniRef50_A1K5K2 Conserved hypothetical signaling protein n=2 Tax... 55 7e-07 UniRef50_C1ZGB5 Response regulator with CheY-like receiver, AAA-... 55 7e-07 UniRef50_B3PSI9 Hypothetical conserved protein n=5 Tax=Rhizobium... 55 7e-07 UniRef50_B1KQK6 Sensor protein n=3 Tax=Gammaproteobacteria RepID... 55 7e-07 UniRef50_Q0AME3 PTSINtr with GAF domain, PtsP n=3 Tax=cellular o... 55 8e-07 UniRef50_A3VUX2 Phosphoenolpyruvate-protein phosphotransferase n... 55 8e-07 UniRef50_A1ZM46 PAS n=1 Tax=Microscilla marina ATCC 23134 RepID=... 55 9e-07 UniRef50_A1RCI2 GAF domain protein n=1 Tax=Arthrobacter aurescen... 55 1e-06 UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis F... 55 1e-06 UniRef50_C1VB04 Sensor protein n=1 Tax=Halogeometricum borinquen... 55 1e-06 UniRef50_B5IA56 Sensor protein n=2 Tax=Aciduliprofundum boonei T... 55 1e-06 UniRef50_B4W0C6 Sensor protein n=1 Tax=Microcoleus chthonoplaste... 54 1e-06 UniRef50_C8S7I7 Putative PAS/PAC sensor protein n=1 Tax=Ferroglo... 54 1e-06 UniRef50_A2DG30 3'5'-cyclic nucleotide phosphodiesterase family ... 54 1e-06 UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase ... 54 1e-06 UniRef50_Q23PX5 GAF domain containing protein n=1 Tax=Tetrahymen... 54 1e-06 UniRef50_A9AVU3 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 54 1e-06 UniRef50_Q2IE06 Putative GAF sensor protein n=4 Tax=Anaeromyxoba... 54 1e-06 UniRef50_C8XKF3 Putative transcriptional regulator, PucR family ... 54 2e-06 UniRef50_Q1D5B9 Sensor protein n=1 Tax=Myxococcus xanthus DK 162... 54 2e-06 UniRef50_C0QJL4 Sensory signal transduction histidine kinase (PA... 54 2e-06 UniRef50_C7PAM9 Sensor protein n=7 Tax=Bacteroidetes RepID=C7PAM... 54 2e-06 UniRef50_C1VCP9 PAS domain S-box n=2 Tax=Halobacteriaceae RepID=... 54 2e-06 UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis F... 54 2e-06 UniRef50_A9KD89 GGDEF family protein n=6 Tax=Coxiella burnetii R... 54 2e-06 UniRef50_A5UQK5 Sensor protein n=2 Tax=Roseiflexus RepID=A5UQK5_... 54 2e-06 UniRef50_D1CEK7 Diguanylate cyclase/phosphodiesterase with PAS/P... 54 2e-06 UniRef50_Q0F301 Sensory box protein n=1 Tax=Mariprofundus ferroo... 54 2e-06 UniRef50_A0JZS9 Putative GAF sensor protein n=1 Tax=Arthrobacter... 54 2e-06 UniRef50_C8X2Z9 Diguanylate cyclase with PAS/PAC and GAF sensors... 53 3e-06 UniRef50_Q1PWN3 Sensor protein n=1 Tax=Candidatus Kuenenia stutt... 53 3e-06 UniRef50_C1V4X1 GAF domain-containing protein n=1 Tax=Halogeomet... 53 3e-06 UniRef50_P74400 Sll0267 protein n=3 Tax=Bacteria RepID=P74400_SYNY3 53 3e-06 UniRef50_A3EWI4 Putative GAF sensor protein n=3 Tax=Leptospirill... 53 3e-06 UniRef50_B4RZF3 Phosphoenolpyruvate-protein phosphotransferase P... 53 3e-06 UniRef50_A3UA31 Sensor protein n=1 Tax=Croceibacter atlanticus H... 53 3e-06 UniRef50_A4VD13 Putative uncharacterized protein n=1 Tax=Tetrahy... 53 4e-06 >UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YEBR_ECOLI Length = 165 Score = 254 bits (649), Expect = 8e-67, Method: Composition-based stats. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF Sbjct: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG Sbjct: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG Sbjct: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 >UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms RepID=B4SV86_SALNS Length = 165 Score = 244 bits (623), Expect = 9e-64, Method: Composition-based stats. Identities = 139/165 (84%), Positives = 152/165 (92%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M+KTE YA LNRDF +LMAGETSFLATLANTSALL+ERLT++NWAGFYLLE DTLVLGPF Sbjct: 1 MSKTELYAALNRDFQSLMAGETSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG+IACVRIPVGRGVCG AVA+N+VQRI+DVH FDGHIACDAASN+EIVLP+ V +IIG Sbjct: 61 QGRIACVRIPVGRGVCGAAVAQNKVQRIDDVHAFDGHIACDAASNAEIVLPVTVGERIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDST FGRFT+EDE GLR LVAQLE VLATTDYKKFFASVAG Sbjct: 121 VLDIDSTAFGRFTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG 165 >UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q65G44_BACLD Length = 164 Score = 223 bits (570), Expect = 1e-57, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 104/151 (68%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + Y L + +AL GE +A AN SALLY+ L D+NWAGFY +D LVLGPFQ Sbjct: 10 SKEKKYELLLKQIDALTEGEPDMIANTANASALLYQSLEDVNWAGFYFAKDGELVLGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G ACVRIP G+GVCGTA +V+R+EDV+ F GHIACDAAS SEIV+PL V IIGV Sbjct: 70 GLPACVRIPFGKGVCGTAYTNGRVERVEDVNAFPGHIACDAASQSEIVVPLEVDGSIIGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 LDIDS + RF + DE L++ +L + L+ Sbjct: 130 LDIDSPIKNRFDETDEYYLKKFTEKLGERLS 160 >UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales RepID=Q4L759_STAHJ Length = 155 Score = 218 bits (557), Expect = 4e-56, Method: Composition-based stats. Identities = 79/151 (52%), Positives = 108/151 (71%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y L + +L+ E + +A L+NTSA+L + L INW GFYL+E++ L+LGPFQG Sbjct: 5 KETNYNLLTKQLQSLIEDEQNLIAILSNTSAILNDNLDQINWVGFYLIENEELILGPFQG 64 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ACV I +G+GVCGTAVA ++ Q ++DVH F GHIACDA S SEIV+P+ V ++IIGVL Sbjct: 65 HPACVHIAIGKGVCGTAVAEDKTQLVKDVHAFPGHIACDANSKSEIVIPIHVNDEIIGVL 124 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 DID+ + RFT+ED++GL +V +EK L Sbjct: 125 DIDAPITDRFTNEDKEGLEVIVKVIEKQLTK 155 >UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonadales RepID=Q2GC44_NOVAD Length = 160 Score = 218 bits (556), Expect = 5e-56, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 100/150 (66%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 ++ E +ADL AL GE +A +AN +AL+++ L D+NWAGFY + + LVLGPF Sbjct: 11 SRAELHADLLEAARALTDGEPDGVANMANVAALIWQFLPDLNWAGFYRMVEGELVLGPFV 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK AC+RIP+G+GVCGTA A + Q + DVH F GHIACDAAS SE+V+P++ +I V Sbjct: 71 GKPACIRIPLGKGVCGTAAASGETQLVADVHAFPGHIACDAASRSELVVPVLRDGGVIAV 130 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +D+DS RF +ED +G+ L + + Sbjct: 131 IDLDSPSPSRFDEEDARGIEALARAMAHRI 160 >UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1J5_LISGR Length = 167 Score = 217 bits (553), Expect = 1e-55, Method: Composition-based stats. Identities = 77/148 (52%), Positives = 105/148 (70%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGP 59 +K E Y+ + A++ GETS +A L+N SALL + L +INW GFYL E+ D LVLGP Sbjct: 15 SKEENYSLCAKQIKAMIDGETSLIANLSNVSALLNQALENINWVGFYLYEESSDQLVLGP 74 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC+RIP+G+GVCG+A A +EDV+ F GHIACDAAS SEIV+P+ +++++I Sbjct: 75 FQGLPACIRIPLGKGVCGSAAAEQSTYLVEDVNAFPGHIACDAASRSEIVVPITIEDELI 134 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 GVLDIDS GRF + D++ L Q+ + Sbjct: 135 GVLDIDSPEVGRFDEVDQKWLEQIRDII 162 >UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria RepID=A9ADC3_BURM1 Length = 167 Score = 215 bits (548), Expect = 4e-55, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + YA L AL+ E +A AN SAL+Y L +NWAGFY + LV+GPFQ Sbjct: 11 SKADQYATLVEQARALVESERDLIANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQ 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK ACVRI +G+GVCGTA + Q + DVH F GHIACDAAS SEIV+PLV +IG Sbjct: 71 GKPACVRIALGKGVCGTAAQTRETQVVRDVHAFPGHIACDAASESEIVVPLVADDGTLIG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 V D+DS V RF DED +G+ L + Sbjct: 131 VWDVDSPVAARFDDEDRRGMEALCRVFVEHAW 162 >UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG8_BURPS Length = 202 Score = 214 bits (546), Expect = 8e-55, Method: Composition-based stats. Identities = 74/152 (48%), Positives = 93/152 (61%), Gaps = 1/152 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y L AL+ ET +A AN ++L+Y L +NWAGFY + LV+GPFQ Sbjct: 43 SKPALYETLAAQARALVETETDIVANAANFASLVYHSLDGLNWAGFYFFDGRELVVGPFQ 102 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK ACVRIP+G+GVCGTA Q + DVH F GHIACD+AS SEIV+PLV +IG Sbjct: 103 GKPACVRIPLGKGVCGTAAQTRGTQVVHDVHAFAGHIACDSASQSEIVVPLVARDGALIG 162 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 V D+DS + GRF ED G+ L +V Sbjct: 163 VWDVDSPLVGRFDAEDATGMEALCRVFVEVAW 194 >UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_LISW6 Length = 166 Score = 212 bits (540), Expect = 4e-54, Method: Composition-based stats. Identities = 78/144 (54%), Positives = 104/144 (72%), Gaps = 2/144 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 K E YA + A++AGE + +A L+N S++L + L+DINW GFYLLE +T LVLGP Sbjct: 10 TKEENYALAFKQVQAMIAGEPNLIANLSNVSSILNQALSDINWVGFYLLEKETNQLVLGP 69 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC+RIP+G+GVCG+A + + +E+VH F GHIACDAASNSEIVLP+V Q++ Sbjct: 70 FQGLPACIRIPLGKGVCGSAASEEKTYIVENVHDFPGHIACDAASNSEIVLPIVKNEQLL 129 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQL 143 GVLDIDS +F RF D+ L ++ Sbjct: 130 GVLDIDSPLFNRFDKVDQMWLEKI 153 >UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480J4_COLP3 Length = 158 Score = 211 bits (537), Expect = 7e-54, Method: Composition-based stats. Identities = 87/156 (55%), Positives = 112/156 (71%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 N+ EFY +L AL+ E+ +A +AN SALL+ERL D+NW GFY L D LVLGPFQ Sbjct: 3 NQAEFYHELLGQTKALINDESDIIANMANISALLFERLADVNWVGFYRLIDGELVLGPFQ 62 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK+AC+RIPVG+GVCGT +VQRI DVH FDGHIACDA+SN+E+V+P+ + ++I + Sbjct: 63 GKVACIRIPVGKGVCGTCSFTGEVQRISDVHQFDGHIACDASSNAELVVPVKIAGKVIAI 122 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 LDIDSTVF RF EDEQG+ +V E+ + D Sbjct: 123 LDIDSTVFDRFNLEDEQGIVSIVQAFEQNITAMDNA 158 >UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellular organisms RepID=GAFA_DICDI Length = 158 Score = 207 bits (528), Expect = 9e-53, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 92/148 (62%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPF 60 +K E Y +L L+ GE + +A LAN +A L E+ + W GFYL++ ++ LVL PF Sbjct: 11 SKEEQYENLLPQIEGLLTGENNQIANLANVTAALKEQF-NFFWVGFYLVDTENELVLAPF 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG IAC RI GRGVCGTA + + + DV F GHIAC + S SEIVLPL + IIG Sbjct: 70 QGPIACTRIRKGRGVCGTAWQQEKTLIVPDVEKFPGHIACSSLSKSEIVLPLYKQGNIIG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 VLD+DS F + DE+ L Q++ L+ Sbjct: 130 VLDVDSDKLNSFDEIDEKYLTQILKLLD 157 >UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli RepID=Q04F13_OENOB Length = 174 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 93/146 (63%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K Y+ LN +L+ GE +A ++N +L++ +IN +Y L++ L+LGPFQ Sbjct: 26 TKQTRYSLLNDQAQSLLDGEHDLIANMSNLVSLIFNSDQNINGTTYYRLKNGELILGPFQ 85 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK ACV IP+GRGVCGTA A + + +VH F+GHIACD SNSEIV+P+ KN+ GV Sbjct: 86 GKPACVHIPLGRGVCGTAAALKKTVIVSNVHKFEGHIACDKDSNSEIVVPIFSKNEFWGV 145 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+DST F F D++ L ++ + Sbjct: 146 LDLDSTKFNYFDKNDQEYLEKIGNYI 171 >UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHM4_BDEBA Length = 165 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 76/160 (47%), Positives = 103/160 (64%), Gaps = 5/160 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+FY +L+ + L E + LAN SALL + L +INW GFYLL ++ L+L FQ Sbjct: 11 DKTKFYKELHSEAEGLA--EKEWFVNLANFSALLKQHLPEINWVGFYLLHNNELLLSSFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI +G+GVCGTA Q Q + DV F GHI CDAAS SEIV+PL+ +++GV Sbjct: 69 GLPACTRIAIGKGVCGTAAKTLQTQLVADVDQFPGHIVCDAASKSEIVVPLIHNGKLLGV 128 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 LD+D+ V RF ED++GL+ LV L ++ T + FA Sbjct: 129 LDVDAPVLNRFDSEDQKGLQGLVQIL---ISKTVWPDRFA 165 >UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 Length = 160 Score = 205 bits (522), Expect = 4e-52, Method: Composition-based stats. Identities = 80/136 (58%), Positives = 101/136 (74%), Gaps = 3/136 (2%) Query: 20 GETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTA 79 E F+A A SA LY +L D+NWAGFYL ++ LVLGPFQG+IACVRIP GRGVCG A Sbjct: 27 DERDFIANAAQFSAFLYTQLDDLNWAGFYLNRNEELVLGPFQGQIACVRIPFGRGVCGAA 86 Query: 80 VARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 139 Q QR++DVH F GHIACD+ASNSE+V+PL+ + ++IGVLD+DS GRF +ED+ G Sbjct: 87 AQSRQTQRVQDVHEFPGHIACDSASNSELVVPLIKEGRLIGVLDLDSPSVGRFNEEDQAG 146 Query: 140 LRQLVAQLEKVLATTD 155 + +LVA LA+TD Sbjct: 147 IERLVAIF---LASTD 159 >UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CNA2_9ACTN Length = 163 Score = 205 bits (522), Expect = 4e-52, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 103/159 (64%), Gaps = 7/159 (4%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-------TLVLGP 59 Y L + L + +L LANT+ALL+ L DINWAGFYL++ D L LGP Sbjct: 4 YTLLAQQIEELAEIDAHWLPVLANTAALLWGALEDINWAGFYLMDSDTGSDGVPELRLGP 63 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +ACVRIP G+GVCGTA + Q +EDVH F GHIACDAASNSE+V+PL VK ++ Sbjct: 64 FQGNVACVRIPFGKGVCGTAAETEKSQLVEDVHKFPGHIACDAASNSEVVVPLKVKGSVV 123 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 GVLDIDS GRF +ED GL + ++E+V+ K Sbjct: 124 GVLDIDSPTRGRFGEEDLLGLEAVARKIEQVVEFEQSTK 162 >UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9PMB7_9PAST Length = 143 Score = 205 bits (521), Expect = 5e-52, Method: Composition-based stats. Identities = 62/142 (43%), Positives = 90/142 (63%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIA 65 Y+ L + ++ ET ++ +ANTSA +YE + D+NW GFY+++D L +GPFQGK+A Sbjct: 2 NYSLLLKQLEQILETETYIISRMANTSAFIYEHMPDLNWVGFYIVKDGVLKVGPFQGKVA 61 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 C I G+GVCG +EDVH FDGHIACD+AS SE+V+P+ ++I LD+D Sbjct: 62 CSDIGFGKGVCGYTWKTGTTTVVEDVHQFDGHIACDSASQSEVVVPIFKDGEMIAELDVD 121 Query: 126 STVFGRFTDEDEQGLRQLVAQL 147 S RF+ ED + L + A + Sbjct: 122 SPRLARFSAEDVEFLEKCAALI 143 >UniRef50_A6L6E7 GAF domain-containing protein involved in signal transduction n=7 Tax=Bacteroidales RepID=A6L6E7_BACV8 Length = 161 Score = 204 bits (519), Expect = 1e-51, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 NK E Y F L++ E ++ LANT+A L E W GFYL++DD L+LGPFQ Sbjct: 11 NKVERYRLFLPQFELLISDEKEEISVLANTAAALREAF-GFFWVGFYLVKDDQLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI G+GVCGT+ A + + +V F GHIAC + S SEIV+P++ Q+ GV Sbjct: 70 GSTACYRIHKGKGVCGTSWAEARTLIVPNVEQFPGHIACSSLSRSEIVVPILANGQVKGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS + F + D + L ++ A + K L Sbjct: 130 LDIDSNLLNFFDETDRRYLEEVTAIVAKTL 159 >UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y9Q1_9FIRM Length = 156 Score = 202 bits (514), Expect = 4e-51, Method: Composition-based stats. Identities = 72/140 (51%), Positives = 98/140 (70%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVG 72 + AL +GET + LAN SAL+ + + INWAGFYL++ LVLGPFQGK AC I +G Sbjct: 15 NAKALCSGETDRICCLANLSALIMQSMPRINWAGFYLMKQGELVLGPFQGKPACTHIALG 74 Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF 132 +GVCGTA +N+ + DVH F GHIACD AS SEIV+PLV +++++GVLDID+ + RF Sbjct: 75 KGVCGTAAQKNECLVVRDVHQFPGHIACDEASRSEIVVPLVYQSEVVGVLDIDAPIPDRF 134 Query: 133 TDEDEQGLRQLVAQLEKVLA 152 +E LR+L A + ++ A Sbjct: 135 GSVEEAVLRELGAWIGELFA 154 >UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B6HFF9_PENCW Length = 205 Score = 201 bits (513), Expect = 5e-51, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 41/193 (21%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-------TDINWAGFYLLED-- 52 +K + Y L L+ G+ ++++ L+N ++LL+ + +NW GFY+ +D Sbjct: 13 SKADIYEQLLLSAQGLLDGQRNWVSNLSNVASLLWHAYASLPAPSSSVNWTGFYIRDDKF 72 Query: 53 --------------------------------DTLVLGPFQGKIACVRIPVGRGVCGTAV 80 L+LGPF GK AC I G+GVCGTA Sbjct: 73 PALASPVTSPPLPGAPGSGGVIISTTYSSSEDQLLLLGPFHGKPACQEIRFGKGVCGTAA 132 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 A+ + + DV F GHIACDA S SEIV+P++V + + ++DID T F DED++ L Sbjct: 133 AKQETVVVPDVLDFPGHIACDAESRSEIVVPILVNGETVAIIDIDCTEPSGFDDEDKKYL 192 Query: 141 RQLVAQLEKVLAT 153 +L L + Sbjct: 193 EKLATLLAEQCDW 205 >UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria RepID=C6S529_NEIML Length = 167 Score = 201 bits (513), Expect = 5e-51, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 90/155 (58%), Gaps = 3/155 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 +K Y ++ +++A ET +++ LANT+A+L E W GFYL++ D LVL P Sbjct: 10 DKAALYREVLPQIESVVADETDWVSNLANTAAVLKEAFGWF-WVGFYLVDTRSDELVLAP 68 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +AC RIP GRGVCG A A+ + DV+ + HIAC + S SEIV+PL + I Sbjct: 69 FQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVNAYPDHIACSSLSRSEIVVPLFSDGRCI 128 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 GVLD DS +F + D L +L LEK + Sbjct: 129 GVLDADSEHLAQFDETDALYLGELAKILEKRFEAS 163 >UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobilis RepID=Y507_ZYMMO Length = 161 Score = 200 bits (510), Expect = 1e-50, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y+DL L++ E +A +ANT+AL++ + D+NW GFY L+LGPFQ Sbjct: 10 SKKTLYSDLLTTLKELLSEEGDPIANMANTAALIWTYMPDLNWVGFYRAIRSYLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK+ACV+IP GRGVCGTA A ++Q + DVH + HI+CD ++ SE+V+P+ +NQI+ Sbjct: 70 GKVACVKIPYGRGVCGTAAATGRIQCVRDVHTYPNHISCDPSAASELVIPIRGRQNQILA 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 V+D++S GRF ED +G +L+ L + L Sbjct: 130 VIDLESPTMGRFDAEDVEGCSRLMEVLGRFLG 161 >UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W841_ATOPD Length = 176 Score = 200 bits (509), Expect = 2e-50, Method: Composition-based stats. Identities = 81/172 (47%), Positives = 105/172 (61%), Gaps = 22/172 (12%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------------ 54 Y L + +L + +L L+N +ALL++ L DINWAGFYL++ T Sbjct: 4 YGLLAKQIISLAEVDAHWLPVLSNAAALLWDALDDINWAGFYLVDPATVAGVELGSGSGA 63 Query: 55 ----------LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 L LGPFQGK+ACVRIP GRGVCGTA A Q +EDVH F GHIACD+AS Sbjct: 64 EPGLEPVSPDLRLGPFQGKVACVRIPFGRGVCGTAAATKTSQLVEDVHQFPGHIACDSAS 123 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 NSE+V+P+ +Q++GVLDIDS RFT ED GL ++V LE + +D+ Sbjct: 124 NSEVVVPIFEGDQVVGVLDIDSPSAARFTQEDLAGLERVVKALESCVDFSDF 175 >UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=21 Tax=Saccharomyceta RepID=YKG9_YEAST Length = 180 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 95/157 (60%), Gaps = 8/157 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLT----DINWAGFYLL---EDD 53 +NK E L + L G+ +++ L+N S+L++ DINWAGFY+ E++ Sbjct: 19 LNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEEN 78 Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 TL+LGPFQGK+AC I G+GVCGTA + + Q + DV+ + GHIACD + SEIV+P++ Sbjct: 79 TLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPII 138 Query: 114 -VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 + +GV+DID + F D++ L +L + K Sbjct: 139 SNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLINK 175 >UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria RepID=Q1QVQ4_CHRSD Length = 155 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 67/142 (47%), Positives = 85/142 (59%), Gaps = 2/142 (1%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGPFQGKIA 65 YA L R L+ +L A T A L + D+NWAGFYL + TL+LGPFQG A Sbjct: 4 YALLARQLETLLDT-RDWLTNTAQTCAFLMHEIPDLNWAGFYLQRQPGTLILGPFQGLPA 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 C IP +GVCG A QR+ DVH F GHIACDAAS SE+V+P+ ++ GVLD+D Sbjct: 63 CNPIPFDKGVCGAAATSRHTQRVADVHAFPGHIACDAASRSELVVPIECGAELWGVLDLD 122 Query: 126 STVFGRFTDEDEQGLRQLVAQL 147 S RF+D D+ G+ +LV Sbjct: 123 SPQPARFSDADQAGIERLVDVF 144 >UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH8_9BACL Length = 155 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 100/154 (64%), Gaps = 3/154 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLG 58 MN E AL++GE + + L+N SAL E L + NW GFYLL+ ++ LVLG Sbjct: 1 MNIVENKELFISQATALVSGEENLVTNLSNLSALYKEYLPNTNWVGFYLLDEKNNNLVLG 60 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 PFQGK+AC RIP +GVCG + +EDVH F GHIACD+A+NSE+V+P++ +++ Sbjct: 61 PFQGKVACTRIPFNKGVCGHCYTTRETIYVEDVHKFPGHIACDSATNSELVVPIIQNDKV 120 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQL-EKVL 151 + +LDIDS F RF+ E+ + ++ Q+ EKV+ Sbjct: 121 VALLDIDSIEFDRFSKEEVEAFSEVTKQVFEKVI 154 >UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria RepID=B8GYQ4_CAUCN Length = 164 Score = 196 bits (499), Expect = 2e-49, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLG 58 +K YA++ + +++ GE + A +A +++L WAGFY+++ LV+G Sbjct: 13 DKATRYAEVADEIASVLDGEPNLTARMATVASMLANSFDSYFWAGFYVVDPTKERELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQ 117 P+QG + C+RI GRGVCG A A Q Q + DVH F GHIACD S SEIV+P+ + Sbjct: 73 PYQGTLGCLRIAFGRGVCGAAAATGQTQLVPDVHAFPGHIACDGRSQSEIVVPVFDPDGR 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 +I V D+DS F + D+ L +++ Sbjct: 133 LIAVFDVDSDKPAAFDEIDQAWLEKILK 160 >UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6_DEBHA Length = 176 Score = 196 bits (498), Expect = 2e-49, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 7/158 (4%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLT----DINWAGFYLLED---DTL 55 K E + + AL +++A LAN S+LL+ ++NW+GFY+L + D L Sbjct: 19 KEEILQSVVDSYEALSYDTRNWVANLANCSSLLWHAYHSMKINVNWSGFYVLNEPRTDEL 78 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK 115 +LGPFQGK+AC I G+GVCG A + + Q + +V+ + GHIACD + SEIV+P+V K Sbjct: 79 ILGPFQGKVACQIIKFGKGVCGNAASSAKTQLVPNVNEYPGHIACDGETQSEIVVPIVNK 138 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 Q++GVLDID F D D + L QL + Sbjct: 139 GQVVGVLDIDCLTLEGFDDIDVKYLEQLATLIGNTCDW 176 >UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria RepID=Q0AMT4_MARMM Length = 157 Score = 196 bits (498), Expect = 3e-49, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 94/151 (62%), Gaps = 5/151 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-TDINWAGFYLLED---DTLVL 57 +K + Y D+ + A++AGETS A LA S LL E W GFY ++ LV+ Sbjct: 3 SKADAYQDVRKQIAAVIAGETSRTARLATASCLLREMFGERFFWTGFYEVDPAKPTELVV 62 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KN 116 GP+QG + C+RIP GRGVCG A A + Q +EDVH F GHIACD+ SNSEIV+P+ Sbjct: 63 GPYQGTMGCLRIPFGRGVCGAAAATGETQLVEDVHAFPGHIACDSRSNSEIVVPVRDAAG 122 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 ++ VLDIDST FG F + D+ GL + +L Sbjct: 123 ALVAVLDIDSTEFGAFDEVDQAGLEAICGEL 153 >UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=C7RCG9_KANKD Length = 171 Score = 196 bits (498), Expect = 3e-49, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 104/152 (68%), Gaps = 3/152 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLG 58 +K E+Y L +AL+A +++++ +A SA +++ L D+NW+GFYL+ + L+LG Sbjct: 15 DKPEYYRQLALQLDALLAEDSNWITNMAQMSAFIFQMLPDLNWSGFYLVNPEKADSLILG 74 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 P+QGK+ACV IP GRGVCG A A + Q +EDVH F+GHIACDAAS SE+V+P+V+ Q+ Sbjct: 75 PYQGKVACVHIPYGRGVCGAAAATLETQLVEDVHKFEGHIACDAASQSEVVIPVVINGQL 134 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKV 150 GVLDIDS + RF +D GL L+ K Sbjct: 135 KGVLDIDSPITNRFDQQDADGLTLLLNTFTKQ 166 >UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostridium RepID=A7GHC9_CLOBL Length = 165 Score = 195 bits (497), Expect = 3e-49, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 109/154 (70%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + + + Y ++ + GE +A L+N SA++ + ++NWAGFYL++D LVLGPF Sbjct: 10 LTEEQKYENMLLFLKGQLLGEKDVIANLSNASAIIMALIDNLNWAGFYLMKDGELVLGPF 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC RI +G+GVCG A++ Q+QR++DVH F+GHIACD+++NSE+V+P++ +++I+G Sbjct: 70 QGMPACDRIKIGKGVCGVAISSRQIQRVDDVHKFEGHIACDSSTNSELVVPIIKEDKILG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 LD+DS FGRFT+ +E+ ++ V L + + + Sbjct: 130 GLDLDSIEFGRFTELEEKYFKKFVQILVENIDWS 163 >UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptococcus RepID=B1IB31_STRPI Length = 165 Score = 195 bits (497), Expect = 4e-49, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 1/158 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K Y LN + + L+ GET+ LA L+N SAL+ R + +AGFYL + LVLGPFQ Sbjct: 5 EKQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQ 64 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G ++C+RI +G+GVCG A + + DV + +I+CD+ + SEIV+P++ Q++GV Sbjct: 65 GGVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGV 124 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 LD+DS+ + D L Q VA L + T D+ F Sbjct: 125 LDLDSSEIEDYDAMDRDYLEQFVAILLEK-TTWDFTMF 161 >UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridium RepID=A6LWI6_CLOB8 Length = 167 Score = 195 bits (496), Expect = 4e-49, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MNKTEFYADLNRDFNALMAG-ETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 M+ ++ L+ G E S + L N SAL+ + INW GFYL++++TLVLGP Sbjct: 10 MSTENKLDNMLIMLEGLIQGDEDSSITKLCNASALINSLIDRINWCGFYLVKNNTLVLGP 69 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC +I +G+GVCG A + ++DVH F+GHIACDAASNSEIV+P++ + +I Sbjct: 70 FQGMPACTKIEIGKGVCGKAALEKETLLVKDVHNFEGHIACDAASNSEIVIPIIKEGNLI 129 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 GVLD+DS F RFT+ ++ L + V L K + D Sbjct: 130 GVLDLDSEEFERFTEVEKTYLEKAVVILSKYIEWND 165 >UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idiomarina baltica OS145 RepID=A3WPB2_9GAMM Length = 156 Score = 194 bits (493), Expect = 1e-48, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 103/152 (67%), Gaps = 5/152 (3%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPFQGKIAC 66 D+ A+ +GE+ +A LAN SAL++++ DINWAGFYL + LVLGPFQGK+AC Sbjct: 8 DDIVTQCEAITSGESDLIANLANISALIFDQFEDINWAGFYLTRGERELVLGPFQGKVAC 67 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 VRIP G+GVCG A +Q + DVH F GHIACDAASN+E+V P++V + +GVLDIDS Sbjct: 68 VRIPFGQGVCGVAADSQALQHVHDVHEFSGHIACDAASNAEVVAPIIVDGKTVGVLDIDS 127 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 GRF+ ED + ++ A + AT ++ + Sbjct: 128 PTVGRFSAEDAEMFARIAA----ICATFNWNQ 155 >UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodobacterales RepID=A3UEE7_9RHOB Length = 166 Score = 193 bits (492), Expect = 1e-48, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 5/151 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-TDINWAGFYLLEDD---TLVL 57 K E Y + ++ A++AGETS A A + LL W GFY+++ LV+ Sbjct: 13 TKAEAYVRIGKEIAAIVAGETSRTARYATAACLLAHNFGPRFFWTGFYVVDPQKPQELVV 72 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KN 116 GP+QG + C+RIP GRGVCG A + Q + DV F GHIACD+ S SEIV+P++ Sbjct: 73 GPYQGTLGCLRIPFGRGVCGAAAQSGETQLVRDVEAFPGHIACDSRSRSEIVVPVLDADG 132 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + VLD+DS F ED+ GL + L Sbjct: 133 ALAAVLDVDSAELDAFDAEDQAGLEAICKIL 163 >UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured bacterium HF130_AEPn_1 RepID=D0E8J6_9BACT Length = 153 Score = 193 bits (490), Expect = 3e-48, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGP 59 MNK Y ++ +++A E + ++ S LL W GFY ++ L +GP Sbjct: 1 MNKESVYLEVEGQALSVLASEKDPIVIMSTLSCLLKNAFPHFYWVGFYRNIDGKNLKIGP 60 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQI 118 +QG + C+ I G+GVCG + + + DVH F GHIACD S SEIV+P ++ Sbjct: 61 YQGTLGCIDIAFGKGVCGASAQEGKTMVVPDVHEFPGHIACDPKSLSEIVVPWFKKDGEL 120 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + VLDIDST G F D + L +++A+L +L Sbjct: 121 LAVLDIDSTELGSFDLLDAEYLERMLAKLSDLL 153 >UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobacillales RepID=C5WHK6_STRDG Length = 176 Score = 192 bits (489), Expect = 3e-48, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E Y L L A ET+ LA L+N SALL L + +AGFYL + L+LGPFQG Sbjct: 17 KIEQYQLLLAQAQGLFANETNALANLSNASALLKMTLPNSVFAGFYLFDGQELILGPFQG 76 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ++CV I +G+GVCG + + ++DV +I+CDAA+ SEIV+P+V + ++GVL Sbjct: 77 GVSCVHIKLGKGVCGESAQSRRTIIVDDVKQHANYISCDAAAMSEIVVPMVKDDCLVGVL 136 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQ-LEKVLATTDYKKF 159 D+DS++ + + D++ L V LEK T + F Sbjct: 137 DLDSSLVADYDEVDQEYLEAFVDLFLEK--TTFTFNMF 172 >UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=Leotiomyceta RepID=B8M5D8_TALSN Length = 645 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 62/207 (29%), Positives = 92/207 (44%), Gaps = 58/207 (28%) Query: 2 NKTEFYADLNRDFNALMAGETSFL--------------------ATLANTSALLYERL-- 39 +K + Y + L+ G+ +++ + LAN S+LL+ Sbjct: 19 SKEQVYDQVLEQATGLVTGQRNWVRTPRHRTSIKLDEGKETNTDSNLANVSSLLWHAYAS 78 Query: 40 -----TDINWAGFYLLED-------------------------------DTLVLGPFQGK 63 + +NWAGFY+ +D L+LGPFQGK Sbjct: 79 LPKPSSAVNWAGFYVRDDLFPLLASPKRSNSISGLTTTTISTSYASHHDKKLLLGPFQGK 138 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 AC I GRGVCGTA + + + DV F GHIACDA S SEIV+P++ + + + ++D Sbjct: 139 PACQEIRFGRGVCGTAAQKKETVVVPDVLEFPGHIACDADSRSEIVVPILFEGETVAIID 198 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKV 150 ID T F + D++ L QL L Sbjct: 199 IDCTEPAGFDEVDKKYLEQLAQLLADT 225 >UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4P6_SALRD Length = 170 Score = 190 bits (484), Expect = 1e-47, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 2/156 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGPF 60 +K E YAD R +AL+ G T +++ +A + L+ +W GFY + DD L++GP+ Sbjct: 13 DKAERYADTRRRIDALLDGPTDWVSAMATVACELHHSFDHYDWTGFYRAVSDDELLVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQII 119 QG C+ I V RGVCG A + Q DV HIAC +++ SEIV+P++ + ++ Sbjct: 73 QGPHGCLHIDVDRGVCGAAARTRETQLWPDVSKAPDHIACQSSTQSEIVVPVLTPDDALL 132 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 VLD+DS G F D + L L L T+ Sbjct: 133 AVLDVDSDTLGAFDPTDREHLEALCRDLGAQFGDTE 168 >UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobacillales RepID=Q039U2_LACC3 Length = 160 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 98/153 (64%), Gaps = 2/153 (1%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKIACV 67 + + L+ GET+ + LAN SALL + +TD+NWAGFYL D L LGPFQGK+AC+ Sbjct: 8 IVDQLDGLLTGETNPITVLANASALLNDLMTDLNWAGFYLYNDKTGQLDLGPFQGKVACM 67 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 I G GV GT+ A+N V R+ +VH F GHIACD+ASN+EIV+P+ V N+++ ++DIDS Sbjct: 68 HIQPGNGVVGTSYAQNAVLRVPNVHEFAGHIACDSASNAEIVVPITVDNRVVAIMDIDSP 127 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 RF++ DE L + L L T + Sbjct: 128 TLDRFSENDEAILTKFGETLAAHLDTAALNTVY 160 >UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=C9ZNQ7_TRYBG Length = 576 Score = 190 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 62/179 (34%), Positives = 100/179 (55%), Gaps = 21/179 (11%) Query: 2 NKTEFYADLNRDFNALMAGET-------SFLATLANTSALLYERL------------TDI 42 +K FY+ L ++ ++ + + + L+N +A L+ L + Sbjct: 16 DKVTFYSRLVKEVQGIVEFPSKRLAPAANAIINLSNVAASLFYGLNRHANPEAVLQSPPV 75 Query: 43 NWAGFYLLEDDTLV-LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL+ L+ LGPFQG+ AC I +GRGV GTA + + + DVH F GHIACD Sbjct: 76 NWLGFYLMHGPELLALGPFQGRPACTEIKMGRGVSGTAAQQAKTLVVSDVHEFPGHIACD 135 Query: 102 AASNSEIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +ASNSEIV+P+ +++G++D+DST F D D QGL+++ + + + + + +F Sbjct: 136 SASNSEIVVPIKSATGEVVGIIDVDSTQLNFFDDVDAQGLQEVAEIVARHVDFSVFHQF 194 >UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q754F5_ASHGO Length = 176 Score = 188 bits (477), Expect = 6e-47, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD----INWAGFYLLEDD---T 54 +++E + + AL + + + LAN S+LL+ + +NWAGFY+ E D Sbjct: 18 DRSEALIYMIESYQALAEHQDNMVCNLANASSLLWHVYRNLNVKVNWAGFYITEKDDPNM 77 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV 114 L+LGPFQGK+AC RI GRGVCGTA +VQ + DV V+ GHIACD + SE+V+P++ Sbjct: 78 LLLGPFQGKVACQRIQFGRGVCGTAALTQEVQVVPDVTVYPGHIACDGDTKSEMVVPILQ 137 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 N+ + ++D+D + FTD D++ L +L ++ + Sbjct: 138 DNRTVAIMDLDCSEHNGFTDLDKKYLEKLAQEISRTCK 175 >UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaproteobacteria RepID=B0SZJ0_CAUSK Length = 164 Score = 188 bits (477), Expect = 7e-47, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 4/148 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K YA+L ++ +++ GET+ A +A +++L W GFY+++ D LV+G Sbjct: 13 DKAARYAELAQEIASVLDGETNLTARMATVASMLASSFDHYFWTGFYVVDPLKDRELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQ 117 P+QG + C+RI GRGVCG A Q Q +EDVH F GH+ACD+ S SEIV+P+ Sbjct: 73 PYQGTLGCLRIAYGRGVCGAAAETGQTQLVEDVHAFPGHVACDSRSQSEIVVPVFDAAGT 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 ++ V D+DS F D+ G+ ++ Sbjct: 133 LLAVFDVDSDQPAAFDAVDQHGIEIILK 160 >UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacterium RepID=C6JPT3_FUSVA Length = 168 Score = 188 bits (477), Expect = 7e-47, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 97/159 (61%), Gaps = 3/159 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E Y+ + ++ E+ +A LAN SA + +INW GFYLL+ + LVLGPF Sbjct: 11 LNFKEKYSAFLNEIEEYLSKESDPIANLANASAFISAFFDEINWCGFYLLKKNELVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 G A RI +G GVCGT+V R + +E+V F GHI CD S SE+V+PL+ +I G Sbjct: 71 CGMPATTRIQIGNGVCGTSVERKEKIVVENVCEFPGHITCDVRSKSEVVIPLIKDEKIYG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 VLDIDS V+ RF+ E+ + L + VA + K TDY+K Sbjct: 131 VLDIDSAVYSRFSSEEVEILEKAVAIINKY---TDYEKI 166 >UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N5U0_9FIRM Length = 157 Score = 188 bits (477), Expect = 8e-47, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 90/142 (63%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIP 70 + +AL+ ++ L+N SA + + +DI+W GFYL +D+ L+LGPFQGK AC IP Sbjct: 9 EQQLDALLENINYEISLLSNASAFIKQVFSDISWVGFYLCQDNQLILGPFQGKTACTLIP 68 Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFG 130 +GVCG + + DVH F HIACD+A+NSE+V+PL++ N + GVLD+DS F Sbjct: 69 FNKGVCGACATNLKTYCVPDVHQFPSHIACDSATNSELVIPLIIDNSLYGVLDLDSRCFA 128 Query: 131 RFTDEDEQGLRQLVAQLEKVLA 152 RF +D++ L +L + K L Sbjct: 129 RFQPDDQEELEKLALIIIKHLK 150 >UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=Q4DK73_TRYCR Length = 549 Score = 186 bits (474), Expect = 2e-46, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 94/172 (54%), Gaps = 21/172 (12%) Query: 2 NKTEFYADLNRDFNA-------LMAGETSFLATLANTSALLYERLTDI------------ 42 +K E Y L + ++ + + L+N SALL+ L Sbjct: 14 SKRELYTRLEAVVRSFVELPSSMLTPHFNLMIGLSNVSALLFYELNRFANTNAMLSDLPL 73 Query: 43 NWAGFYLLE-DDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYLL+ LVLGPFQG+ AC+ + +GRGVCGTA + + + DVH F GHIACD Sbjct: 74 NWLGFYLLQSPQRLVLGPFQGRPACIEVAMGRGVCGTAAQKGETLIVPDVHAFPGHIACD 133 Query: 102 AASNSEIVLPL-VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 + SNSEIV+P+ K ++GVLD+DST F ED QGL+ + L + L Sbjct: 134 SLSNSEIVVPIKTAKGHVVGVLDVDSTQREFFDAEDAQGLQNIATVLSQNLE 185 >UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishmania RepID=A4HD30_LEIBR Length = 524 Score = 185 bits (470), Expect = 5e-46, Method: Composition-based stats. Identities = 62/171 (36%), Positives = 93/171 (54%), Gaps = 21/171 (12%) Query: 2 NKTEFYADLNRDFNALMAG-------ETSFLATLANTSALLYERLTDI------------ 42 +K E Y L + AL+ G + + + L+N +AL + L Sbjct: 13 SKKELYDWLVKQVEALVDGMSKRFTPQANLIIGLSNVAALCFYELNRFCNPGAALEKLKV 72 Query: 43 NWAGFYLLE-DDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL + L LGPFQG+ AC I VG+GVCGT + + +V F HIACD Sbjct: 73 NWFGFYLFQAPGLLALGPFQGRPACTEIRVGKGVCGTVAESGESLVVSNVEEFPSHIACD 132 Query: 102 AASNSEIVLP-LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++S SE+ +P L+ ++ V+D+DST G F++ED++GL ++ A LE+ L Sbjct: 133 SSSKSEVAVPVLIENGSVVAVIDVDSTELGYFSEEDKEGLERVAAVLEQHL 183 >UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX0_9GAMM Length = 163 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 82/149 (55%), Gaps = 2/149 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K YA + A++ E+ +A LANT+A+L E + W GFY + D LVL FQ Sbjct: 10 DKAARYAQILPQLRAIIEDESDTVANLANTAAVLKEAFGWL-WVGFYRVVGDELVLSAFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIG 120 G +AC RI GRGVCG A A+N+ + DV+ HIAC + S SEIV+PL + Sbjct: 69 GPLACTRIARGRGVCGQAWAQNRTLIVPDVNAHPDHIACSSRSQSEIVVPLRDASGAVWA 128 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 VLD D+ F + D QGL + L + Sbjct: 129 VLDADAEALAVFDETDAQGLETIAVWLSE 157 >UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B632 Length = 153 Score = 183 bits (466), Expect = 2e-45, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACV 67 L + L++ F+ L+N SALL + + D++W GFY++ LVLGPFQGK+AC Sbjct: 2 ELLIKQLEELISPNEWFVTNLSNASALLVDAIDDLSWVGFYMMRAGELVLGPFQGKVACT 61 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDIDS 126 I VG+G CG V +Q IEDV F G+IACDA + SEIV+PL + ++I VLD+DS Sbjct: 62 HIKVGKGACGVCVQGDQTILIEDVTTFPGYIACDAEAKSEIVVPLHDEEGKVIAVLDVDS 121 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLAT 153 GRF D++++ L LEK L + Sbjct: 122 NSLGRFGDKEQELFEALGKVLEKSLWS 148 >UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VMX6_NAEGR Length = 186 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 63/161 (39%), Positives = 96/161 (59%), Gaps = 14/161 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLLEDD------ 53 E Y L ++ ++M+ E++ +A LAN ++L Y INW GFYL++ Sbjct: 22 EETYTKLLKEIESVMSDESNLIANLANCASLFYNTFLENGHPINWFGFYLIDVKTNDKPI 81 Query: 54 -TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 LVLGPF GK+AC RI G+GVCG + + ++ + +VH F GHIACD+ASNSEI +PL Sbjct: 82 RELVLGPFHGKLACTRIRFGKGVCGACITKEEIIVVPNVHEFSGHIACDSASNSEICVPL 141 Query: 113 VV--KNQIIGVLDIDSTVFGRFT-DEDEQGLRQLVAQLEKV 150 Q+ G++D+DST +F+ + D + L++L + K Sbjct: 142 FNSQNGQVFGLIDVDSTALEQFSLEIDGKYLKELANLITKY 182 >UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MM74_9FIRM Length = 152 Score = 182 bits (462), Expect = 4e-45, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L + +L+ ET F+A +N +A + + +INW GFY ++++ LVLGPFQGKIAC I Sbjct: 6 LEQQTRSLLE-ETDFIAATSNLTAFMNQLFPNINWIGFYFVKNNELVLGPFQGKIACTHI 64 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P +G+CG ++ I DV HIACD+AS SE+ +P++ +N IG+LDID+ + Sbjct: 65 PFEKGICGRCYREKRLLNIPDVLSIQDHIACDSASRSELCIPILKENNCIGMLDIDAPIK 124 Query: 130 GRFTDEDEQGLRQLVAQLEKVLATTDY 156 RFT EDE+ +V+ EK + + Sbjct: 125 NRFTKEDEKKASLIVSLYEKAIQEHRW 151 >UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Ajellomyces dermatitidis RepID=C5GND5_AJEDR Length = 240 Score = 182 bits (462), Expect = 4e-45, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 95/228 (41%), Gaps = 75/228 (32%) Query: 1 MNKTEFYADLNRDFNALMAGETSFL----------------------------------- 25 ++K E Y+ + L+ G+ +++ Sbjct: 13 LSKAEVYSQVLEQAKGLLDGQRNWVCIPYLQPMPLYRCPMVTIASIASIASIPSMMAIFN 72 Query: 26 ---------------ATLANTSALLYERL-------TDINWAGFYLLEDD---------- 53 + LAN ++LL+ +++NWAGFY+ +D Sbjct: 73 RSYANKNAYTGIIKVSNLANVASLLWHAYAALPTPSSNVNWAGFYVRQDKFPSLASPDSD 132 Query: 54 --------TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN 105 TL+LGPFQGK AC I GRGVCG A R + + DV ++GHIACDA S Sbjct: 133 TKGTPSTKTLLLGPFQGKPACQLIQFGRGVCGAAAERRETVLVTDVLNWEGHIACDAESR 192 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 SEIV+P++V + + ++D+D T F D D Q L L A L Sbjct: 193 SEIVVPILVNGETVAIIDVDCTQPSGFDDVDRQWLEALAAILSDSCDW 240 >UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=Q2S9K8_HAHCH Length = 169 Score = 181 bits (460), Expect = 6e-45, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 78/148 (52%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFY-LLEDDTLVLGPF 60 K+ Y R + GET + A L+ L+ R +W GFY ++ + + +GP+ Sbjct: 13 EKSAHYQHTLRAIRHAIEGETDWTAILSTVVCELHHRFEYFHWTGFYRVVAHELMKVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQII 119 QG C+ IP RGVCG A +VQ + DV+ F GHIAC + + SEIVLPL + Sbjct: 73 QGGHGCLTIPFSRGVCGAAAREQKVQLVSDVNEFPGHIACSSTTQSEIVLPLFNANGDVA 132 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLDIDS F DE+ L +L+ L Sbjct: 133 AVLDIDSDHIDAFDAVDERFLAELLTDL 160 >UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms RepID=Q3J6E1_RHOS4 Length = 150 Score = 180 bits (457), Expect = 1e-44, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 2/140 (1%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV-LGPFQGKIA 65 Y L++ AL GE +A +A + ++ +W GFY + L+ +GP+QG Sbjct: 3 YDQLDQTIEALCHGEQDTVALMATVACEIHHAHPLSDWTGFYRVTGPELLKIGPYQGAHG 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDI 124 C+ IP RGVCG A ++Q + DV F HIAC + + SEIVLP+ + ++GVLD+ Sbjct: 63 CLVIPFSRGVCGAAARTGRIQLVPDVEAFPDHIACSSTTRSEIVLPVRNGEGWLLGVLDL 122 Query: 125 DSTVFGRFTDEDEQGLRQLV 144 DS FT+ED L+ L+ Sbjct: 123 DSNTPAAFTEEDAARLQALL 142 >UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoanaerobacterales RepID=Q8R981_THETN Length = 156 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 1/153 (0%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M K + + L + A T +L E + NW GFY ++D LV+GP+ Sbjct: 1 MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPY 60 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ VRI VG+GVCG AVA ++DV D ++AC + SEIV+P+ +II Sbjct: 61 IGRPTEHVRIKVGQGVCGRAVAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEII 120 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 G +DIDS F D+D+ L ++ + + L Sbjct: 121 GEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLE 153 >UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6T4_MYCS5 Length = 148 Score = 178 bits (453), Expect = 4e-44, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 1/144 (0%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L + + +L+A E + LANTSA +Y+ ++NWAGFYL E + L L FQGKIAC +I Sbjct: 2 LVQQYKSLIADEVKIYSILANTSAFIYQNFKNLNWAGFYLAEGEVLYLSSFQGKIACTQI 61 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P RGVCG A + ++DVH F HIACD+ASNSEIV+P++V +++ GVLD+DS + Sbjct: 62 PFSRGVCGKAAREQKTIVVDDVHEFKDHIACDSASNSEIVIPIIVNSKLYGVLDLDSPLK 121 Query: 130 GRF-TDEDEQGLRQLVAQLEKVLA 152 F E L ++ +L + Sbjct: 122 SNFKDKEIVLTLEKIATELANKIK 145 >UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C822_9FIRM Length = 148 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 61/138 (44%), Positives = 83/138 (60%), Gaps = 2/138 (1%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPFQGKIACV 67 L L+ +A ++N ALL+ + +INW GFY+ + + LGPFQGK+AC Sbjct: 5 LIEQCKYLVDETLPNIANISNLIALLFHEMENINWLGFYICDEKNQECTLGPFQGKVACT 64 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 RIP +GV GT + QRIEDVH F GHIACD ASNSEI +PL +++ +LDIDS Sbjct: 65 RIPYRKGVVGTCAKTQETQRIEDVHKFAGHIACDCASNSEICIPLKKDGKLVAILDIDSF 124 Query: 128 VFGRFTDEDEQGLRQLVA 145 F F+ ED+ L ++ Sbjct: 125 EFNNFSIEDQAILEKICE 142 >UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW57_CHLT3 Length = 163 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 89/147 (60%), Gaps = 1/147 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+ Y L R+ L+ G+ +A AN AL++ + DI+WAG Y + L+LGPFQ Sbjct: 12 SKTDLYKSLTRELFVLLKGDNDLIANTANFVALIFHNVPDIHWAGIYFYKSGKLILGPFQ 71 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-SNSEIVLPLVVKNQIIG 120 GK AC ++ VGRG+ G A R + +E+VH G I+ +AA +NS+I +PL+ + +IG Sbjct: 72 GKPACPKLEVGRGLTGIAAERMKTTMLENVHEIPGQISFNAAETNSQISVPLIKEGHLIG 131 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLDI S + RF ED+ GL L Sbjct: 132 VLDISSELLSRFDAEDKAGLENLCEVF 158 >UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P9E9_9LACO Length = 155 Score = 176 bits (446), Expect = 3e-43, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 89/147 (60%), Gaps = 3/147 (2%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPFQGKIA 65 + +L+A E S + LAN SAL+ + + +NW GFY + +D LVLGPFQG++A Sbjct: 5 QLMLSQLKSLLADEHSPVTILANASALINQTVDQLNWVGFYRYDHANDELVLGPFQGRVA 64 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDI 124 C+ I +G GVCGTA +VQ + DV + G+I+CDAA+ SE+V+PLV + GVLD+ Sbjct: 65 CMHIKMGAGVCGTAAQDRKVQVVADVSQYPGYISCDAAAKSELVVPLVRQDGSLYGVLDL 124 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVL 151 D+ V RF + + A + K + Sbjct: 125 DAPVRDRFDKQLVATMTTSAAIIMKAI 151 >UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF9_9FIRM Length = 170 Score = 175 bits (445), Expect = 4e-43, Method: Composition-based stats. Identities = 62/154 (40%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E + A + E+ F+A +AN S+++ + D+NWAGFY++ D LVLGPF Sbjct: 11 LNNEERLKYMVSFAKATIEIESDFVAMMANLSSVIMATIKDLNWAGFYIVRKDQLVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC R+ +GVC +A + R+++VH F H+ACD+ASNSE+VLP+ + ++I Sbjct: 71 QGLPACTRLK-DKGVCVSAWQNKSIVRVKNVHEFKDHVACDSASNSEMVLPIKIHGEVIA 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 VLD+DS RF + +E+ LV +E L T Sbjct: 130 VLDLDSPKIARFGEVEEKHFADLVKLIEDQLEKT 163 >UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=B7RB60_9THEM Length = 309 Score = 174 bits (442), Expect = 8e-43, Method: Composition-based stats. Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E++ L ++ ++ L L L ++ +W GFY +ED L LGPF G Sbjct: 163 KKEYFDSLLKEIEKILERGKEALGDLCK---FLRNHVSYYDWVGFYFVEDGKLKLGPFVG 219 Query: 63 KIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + V IP G G+CG A R + ++DV +++C + +EIV+P+ +IIG Sbjct: 220 EPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPIFKDGKIIGE 279 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS F++ED L ++ + KV+ Sbjct: 280 LDIDSYSPSPFSEEDRAFLEKVCELVSKVV 309 >UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5K748_CRYNE Length = 191 Score = 174 bits (442), Expect = 8e-43, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 85/176 (48%), Gaps = 24/176 (13%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERL------------TDINWAGFYLL 50 K EFY + AL+ GE ++ L+ SA+LY +NW GFYL Sbjct: 16 KAEFYDHVVSHLEALLEGERYWVTNLSQASAILYHSFLACSIYGGDAHSPVVNWCGFYLQ 75 Query: 51 ED---------DTLVLGPFQGKIACVRIPV--GRGVCGTAVARNQVQRIEDVHVFDGHIA 99 L+LGP+ G+ AC+ I G+GVC A + DV + GHIA Sbjct: 76 PPAHPSSSSSSSPLLLGPYHGRPACLSITPTPGKGVCADAFVNQATLIVPDVETYPGHIA 135 Query: 100 CDAASNSEIVLPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 CD + SEIV+PL ++IGVLD+DST F ++D++GL ++ L K Sbjct: 136 CDGDTKSEIVVPLRDGDGKVIGVLDLDSTQLATFDEDDKKGLERVAEVLAKGCDWV 191 >UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYW5_9BACT Length = 151 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y L + A LA A+L+ ++ W G Y L DD L++ +QG Sbjct: 4 KLAKYDRLYEQIKGYVQTTDDIWARLATMEAVLHHKMQTFFWTGVYALIDDELIVRSYQG 63 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIGV 121 +AC ++ GVC AV+ + + DV F GHIAC++ S SEIVLP+ + ++ Sbjct: 64 PVACQKLRHHTGVCWAAVSTGETVIVPDVERFPGHIACNSKSRSEIVLPIRDREGRVFAC 123 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+DS F EDE+GL+++++ L Sbjct: 124 LDVDSDRLDAFDREDEEGLKKILSLL 149 >UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHG8_ACHLI Length = 154 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 86/148 (58%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC 66 Y L L++ E + L+ L+N SA L + + D+NW GFY+ ++ L LGPFQGK+AC Sbjct: 3 YKVLLESAEGLLSTEPTNLSILSNASAFLNDAIPDLNWVGFYMYKNGILTLGPFQGKVAC 62 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 I G+GV GT+ ++N+V +++VH + HI CD S SE V+P+ I +LD+DS Sbjct: 63 NLIMPGKGVVGTSYSKNEVIVVKNVHEIENHITCDPISMSETVIPIRHNGAIWAILDLDS 122 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLATT 154 V RF + L+Q +E + + Sbjct: 123 PVENRFDKDLVDFLQQFGLLIENYIDFS 150 >UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNM9_ALKMQ Length = 155 Score = 173 bits (438), Expect = 3e-42, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 1/151 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K E + L + AL++ E LL + NW GFY++E+ LVLG + Sbjct: 5 TKKELFLRLEKKAFALISKEEQLDNVYQGIVELLDNNIPYYNWTGFYMIENGELVLGHYL 64 Query: 62 G-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 G I +G+G+CG A R + ++DV ++AC + SEIV+P++ + ++G Sbjct: 65 GAHTDHTHIQIGQGICGQAADRKETFIVDDVTKETNYLACSFETASEIVVPILKGDDVLG 124 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +DIDS F D+ L + A+L + L Sbjct: 125 EIDIDSHEPSAFDSLDQHLLESICAKLAERL 155 >UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRB2_9BACT Length = 169 Score = 172 bits (436), Expect = 4e-42, Method: Composition-based stats. Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQ 61 + Y +N L+ E LA LAN +ALLY L D+NWAGFYL+ + LVLGPFQ Sbjct: 14 EQLYNYVNAKLLGLICEEPDPLANLANAAALLYLLLDDLNWAGFYLMREKENALVLGPFQ 73 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK AC RIP+ +GVCG A ++ + DV +F GHIACD AS SEIVLPL+ + +++GV Sbjct: 74 GKPACTRIPLDKGVCGAAARTGEIHIVPDVELFPGHIACDGASASEIVLPLMREGRVLGV 133 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 LD+DS + RF+ ED +GL + V L K +A D Sbjct: 134 LDLDSPLRKRFSSEDGEGLLKFVETLHKYVAWDD 167 >UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAL6_PHYIN Length = 292 Score = 172 bits (436), Expect = 4e-42, Method: Composition-based stats. Identities = 59/170 (34%), Positives = 86/170 (50%), Gaps = 17/170 (10%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLL------ 50 +N E D+ G+ ++A AN S++++ INWAGFY + Sbjct: 117 INAEELLGDVA--AFTATTGQRDYVANAANVSSIIWHAFVEAERPINWAGFYFVRPLANP 174 Query: 51 ----EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS 106 D L+LGPF GK AC RI GVCG A VQRI DVH F GHIACD AS S Sbjct: 175 KETDHDHILILGPFMGKPACSRIRFQSGVCGAAWRTKSVQRITDVHEFPGHIACDDASQS 234 Query: 107 EIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 E+V+P+ + ++I ++D+D F+ EDE+ ++ + + + Sbjct: 235 ELVVPVFDKQGEVIALIDLDCPEKNGFSVEDERTFVEVARVMSEACDWGN 284 >UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2CFA2_9FIRM Length = 163 Score = 172 bits (436), Expect = 5e-42, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 86/151 (56%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E +L + E + +A +AN SA + + D+NWAGFY++ D L+LGPF Sbjct: 11 LNDKERMDELINYVKIQVDDEENPIALMANVSAFIMAIIKDLNWAGFYIVGDGNLILGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC R+ +GVC A ++ +++DV F H+ CD SNSE+V+P+ + + Sbjct: 71 QGLPACTRLSFDKGVCAKAYREGKIIKVDDVSKFIDHVVCDNNSNSELVVPIFNEGDLKC 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +LD+DS RF+ + +G +++ LE + Sbjct: 131 LLDLDSPKLARFSQVEVEGFKEIGKILENRI 161 >UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F3I2_THELT Length = 318 Score = 171 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K + + +L ++ + + ++ LLYE ++ NW GFYL + +TLVLG Sbjct: 162 SKKQLFEELTNQIEEII-FQNNIHESMEEICNLLYENISYYNWVGFYLTDFDEKNTLVLG 220 Query: 59 PFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQ 117 PF G+ V+IP G+G+CG A + ++DV +++C SEIV+P+++ Sbjct: 221 PFVGEPTEHVKIPFGKGICGQAAEKKTTFIVQDVSKETNYLSCSPKVKSEIVVPIMIDGI 280 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 I G LDIDS + F +DE L+ + ++ + + + Sbjct: 281 IYGELDIDSHISNAFDKDDELFLKNICDKISQKIRNEE 318 >UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EYD5_SCLS1 Length = 155 Score = 168 bits (426), Expect = 6e-41, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 80/152 (52%), Gaps = 18/152 (11%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED----DTLV 56 ++K E YA + + L G+ +++A S FY L+ +L+ Sbjct: 13 ISKEEAYAQVLEEARGLFDGQRNWIAIEIEIS--------------FYTLDPSSTKPSLI 58 Query: 57 LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 LGPFQGK+AC I RGVCGTA + Q + DV F GHIACDAAS SEIV+P++V Sbjct: 59 LGPFQGKVACQTIAFSRGVCGTAASTQTTQLVPDVEKFPGHIACDAASQSEIVVPIIVDG 118 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 + ++D+D V F + D + L +L L Sbjct: 119 IVKAIIDVDCGVKEGFDEVDRKWLEELAGVLA 150 >UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum KM20 RepID=B1MXN0_LEUCK Length = 160 Score = 165 bits (419), Expect = 4e-40, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Query: 21 ETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKIACVRIPVGRGVCGT 78 + LA +N +A+L++ + +NW GFYL ++ D LV+GPF GK A I GV G Sbjct: 25 QNYQLANYSNAAAILFQNMKQLNWVGFYLYDEESDKLVVGPFLGKPAVALISPESGVVGK 84 Query: 79 AVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDE 137 A + + + DVH F GHI CD S SEIV+P++ + +GVLDIDS RFT ED+ Sbjct: 85 AFSAQKTIIVSDVHSFSGHIVCDPESKSEIVVPIITRDGKRLGVLDIDSPELNRFTLEDQ 144 Query: 138 QGLRQLVAQLEKVL 151 L V L + + Sbjct: 145 VSLEHFVQTLLEYV 158 >UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF04_KOSOT Length = 318 Score = 164 bits (416), Expect = 8e-40, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 4/149 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 + + L + + E F L LL +T NW GFYL ++D L+LGP Sbjct: 167 ERKRRFEKLFNVISEKI-REKEFDEKLKTIVKLLDHYVTYYNWTGFYLTDEDEATLLLGP 225 Query: 60 FQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 F G+ VRI G+G+CG A + + + DV +++C + SEIV+P++ N++ Sbjct: 226 FVGEPTEHVRIKFGQGICGQAAEKKALFLVPDVSREANYLSCSPKTKSEIVVPILKGNKV 285 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 IG LDIDS G FTD D + L ++ L Sbjct: 286 IGELDIDSHSIGAFTDADSEFLEKICKLL 314 >UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH36_PETMO Length = 315 Score = 164 bits (415), Expect = 1e-39, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 7/157 (4%) Query: 3 KTEFYADLNRDFNALMAGET--SFLATLANTSALLYERLTDINWAGFYLLE---DDTLVL 57 K + L L++ + + L S LL ER+ NW GFYL++ D++LVL Sbjct: 159 KKADFWILYDKIKTLISDKNYNDKQSILKLISQLLAERIPYYNWVGFYLVDETEDNSLVL 218 Query: 58 GPFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VK 115 GPF G+ +I G+G+CG A + ++DV D +++C + SEIV+P+ Sbjct: 219 GPFVGEPTEHTKIKFGQGICGQAASTKTTFVVDDVSKEDNYLSCSPKTQSEIVVPIFDKN 278 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 I+G +DIDS F +D L + L + Sbjct: 279 GNIVGEIDIDSHEKAPFDQDDRSFLEAIAKLLSERFW 315 >UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4_THERP Length = 164 Score = 160 bits (404), Expect = 2e-38, Method: Composition-based stats. Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 4/155 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLAN-TSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + + + A +A + + LA +L + +W G YL+E D LVL + Sbjct: 5 TRDAILQQVRQTLEARLAL-SDQIPQLAEDVCRILERTVPWYDWVGIYLVEGDELVLAAW 63 Query: 61 QGK--IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 G VRIP+G+G+CG A Q + DV ++ C ++ SEIV+P+ + Sbjct: 64 SGPAATEHVRIPIGQGICGAAAREGQTIIVPDVRQDPRYLQCFLSTRSEIVVPIRQDEDV 123 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 IG +DIDS F ++D L L ++L + L Sbjct: 124 IGEIDIDSDELAAFDEKDRALLEWLASELAERLPH 158 >UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HLN1_FERNB Length = 778 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 8/157 (5%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPF 60 +K+E + L + + A + L LL E + NW GFYL++D+ LVLGP+ Sbjct: 156 DKSEIFEYLKKQI--VSAKNENLLEM---ICKLLDEHVPYYNWTGFYLMDDEGMLVLGPY 210 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQI 118 G+ VRIPVG+G+CG A ++DV +++C SEIV+P+ + Sbjct: 211 VGEPTEHVRIPVGKGICGQAADTKLTFIVQDVSQETNYLSCSPHVKSEIVVPIFRNDGSV 270 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 G +DIDS F + D++ L + QL D Sbjct: 271 FGEIDIDSHYIAPFDNRDKEFLEWIAKQLMVRTVHWD 307 >UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RB85_WEIPA Length = 163 Score = 158 bits (399), Expect = 8e-38, Method: Composition-based stats. Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 3/121 (2%) Query: 34 LLYERLTDINWAGFYLLED--DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV 91 +LYE L +NWAGFYL + D L+LGPF GK A VRI G GV G A + ++DV Sbjct: 43 ILYENLATVNWAGFYLYDHEQDELILGPFLGKPAVVRIKPGSGVVGQAYESQETITVDDV 102 Query: 92 HVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKV 150 H GHIACD+ASN+EIV+PL + IGV+DIDS F RFTD+D+ L L Sbjct: 103 HQHAGHIACDSASNAEIVVPLTRENGEKIGVIDIDSITFNRFTDQDKADLEHFAQTLLPY 162 Query: 151 L 151 + Sbjct: 163 I 163 >UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IN96_ACIBL Length = 163 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 8/155 (5%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-------DDTLVLGPF 60 L + + + + L + L NW GFY++E D LVLGP+ Sbjct: 8 EQLTAQLKTMAETAPTVEDLMTDIVGRLQQYLPHYNWVGFYMIEKSLLPGVDPVLVLGPY 67 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G RIP+ G+CG AV ++DV+ ++AC + SEIV+P+ +K +I+ Sbjct: 68 VGAPTTHTRIPLNEGICGAAVTTGDTVIVDDVNSDPRYLACSLETKSEIVVPIRMKGEIV 127 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 G LDIDS F DED + + L T Sbjct: 128 GELDIDSHDAAAFGDEDRTFCEFCAKLVGEYLERT 162 >UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7ID90_THEAB Length = 312 Score = 157 bits (397), Expect = 1e-37, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 4/152 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPF 60 +K E + L + + + LY+ + +W GFY++ D L L F Sbjct: 155 DKDELFDKLLDKLEK--ESKDDPVKYMRKICQYLYDEIPYYDWVGFYMINKDNVLELFEF 212 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ V+I +G G+CG A V ++DV +++C SEIV+P+ ++I Sbjct: 213 VGEPTEHVKINIGEGICGQAAMLKDVFIVQDVSKETNYLSCSPKVKSEIVVPIFKNKEVI 272 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 G LDIDS F + D + L ++ + K+ Sbjct: 273 GELDIDSHYITPFDERDRKFLEKVCEDIPKIW 304 >UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMS7_THEM4 Length = 304 Score = 154 bits (390), Expect = 1e-36, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV-LGPF 60 +K E + ++ + N+ + E + + +LY+++ NW GFY++ D+ L+ L F Sbjct: 154 DKDEIFEEILMELNS-VDDE----SYMRKACEILYDKIPYYNWVGFYMINDEGLLELYDF 208 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ V+I +G G+CG A + ++DV +++C SEIV+P+ +++I Sbjct: 209 VGEPTEHVKIKIGEGICGQAANLKRTFIVQDVSKETNYLSCSPKVKSEIVVPIFNNSEVI 268 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 G LDIDS F D+Q L+++ ++ ++ Sbjct: 269 GELDIDSHYISPFDLRDDQFLKKICIRVSEIWKNK 303 >UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187DAE5 Length = 216 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 52/207 (25%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLY---ERLTDI---------NWAG--- 46 K EF+A + L+ G+ S++ A+ S+L+Y + NW G Sbjct: 13 TKAEFWAHVATQLQHLLDGQRSWVTNTASASSLIYFSLQAFPAFFGPDETKAVNWVGKKG 72 Query: 47 -FYLLEDDT----------------------------LVLGPFQGKIAC--VRIPVGR-- 73 F + E D L+LGPF GK AC + + G+ Sbjct: 73 HFSMSEHDQILTGIPNTGVYIDSKYFPPSQDSNSAARLLLGPFCGKPACQFINVNPGKKN 132 Query: 74 -GVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF 132 GVC + + DV + GHIAC AA+ SEIV PL +GVLD+D G F Sbjct: 133 PGVCADGFIHGKSLLVPDVDQYPGHIACFAATKSEIVCPLFDGETPVGVLDLDCLALGGF 192 Query: 133 TDEDEQGLRQLVAQLEKVLATTDYKKF 159 +ED+ GL + + K ++D+ + Sbjct: 193 DEEDKIGLDKCAEIISK---SSDWTRL 216 >UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus oeni RepID=Q04HB5_OENOB Length = 154 Score = 148 bits (374), Expect = 7e-35, Method: Composition-based stats. Identities = 65/141 (46%), Positives = 82/141 (58%), Gaps = 3/141 (2%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACV 67 L++ F A E +A LAN +A+L + + DINWAGFYLLE + LVLGPFQG A Sbjct: 10 LSKIFLAAHETEKDKIANLANAAAVLMQFVPDINWAGFYLLEKGSGDLVLGPFQGLSATP 69 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL-VVKNQIIGVLDIDS 126 RI GV GT + + + DVH F GHIACD ASNSEI LP+ + IG+LDIDS Sbjct: 70 RIKQDSGVVGTTFTKQTLTIVPDVHQFAGHIACDPASNSEIALPITRKNGEKIGILDIDS 129 Query: 127 TVFGRFTDEDEQGLRQLVAQL 147 + RF + L + L Sbjct: 130 PITNRFDQQIALDLENFIQTL 150 >UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P1G5_USTMA Length = 230 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 66/217 (30%), Positives = 93/217 (42%), Gaps = 64/217 (29%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDI--------NWAGFYLL-- 50 + K +FY L +L+ T +++ L+N S+L++ + NWAGFYLL Sbjct: 14 VTKADFYDHLESSLISLIDPGTDWISALSNASSLVFNSMNRFPAWTSKRINWAGFYLLSP 73 Query: 51 ------------EDDTLVLGPFQGKIACVRIP--VGRGVCG--TAVARNQVQRIEDVHVF 94 + TL+LGPF G AC I G+GVC +AV +V R+ D + Sbjct: 74 LLPSEIVSPKKRKHPTLLLGPFNGLPACQLIVSVPGKGVCADASAVLPPRVVRVADTDAY 133 Query: 95 DGHIACDAASNSEIVLPLVV--------------------------------------KN 116 GHIACD+ S SEIV+PLV+ ++ Sbjct: 134 PGHIACDSLSKSEIVVPLVIPRTRLAHVHQNALQQQSPLNQATPVDGDDRSWAGRGDAQD 193 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 IIGVLDID F EDE LR + + + A Sbjct: 194 IIIGVLDIDCESLDGFDQEDETRLRTIADLIVQRSAW 230 >UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DN89_STACT Length = 124 Score = 146 bits (370), Expect = 2e-34, Method: Composition-based stats. Identities = 54/101 (53%), Positives = 70/101 (69%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK 63 T Y + + L A E + L+NTSALL E L++INW GFYL+ED L+LGPFQG+ Sbjct: 5 TTNYKSIQQQLEGLNADEKYMITLLSNTSALLNENLSNINWLGFYLIEDGQLILGPFQGR 64 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 AC I +G+GVCGT+V ++ QR++DVH F GHIACDA S Sbjct: 65 PACTPIQIGKGVCGTSVEKDITQRVDDVHAFPGHIACDARS 105 >UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 Tax=Bacteroidetes RepID=A5FJZ4_FLAJ1 Length = 151 Score = 145 bits (366), Expect = 6e-34, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 7 YADLNRDFNALMAGETS-FLATLANTSALLYERLTDINWAGFYL--LEDDTLVLGPFQG- 62 + +L +A+++ L LL E + NW GFY LE+ TL LGP+ G Sbjct: 3 FQELQPKISAIISDNNKVRDEKLLAVCQLLNENVEYYNWVGFYFANLENKTLHLGPYVGA 62 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + IP G+G+CG N + DV D +IAC SEIV+PL V IG + Sbjct: 63 ETDHTVIPFGKGICGQVAESNANFVVPDVKAQDNYIACSLTVKSEIVVPLFVNGVNIGQI 122 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 DIDS V FT+ DE+ L + ++ K+ Sbjct: 123 DIDSHVIDPFTEADERFLEFVNQEVAKLF 151 >UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CKR5_PARTE Length = 163 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 79/158 (50%), Gaps = 12/158 (7%) Query: 2 NKTEFYADLNRDFNALMAGETSF--LATLANTSALLYERLTDINWAGFYLLEDDTLV--- 56 NK + Y + + + + A + +LL +T + + GFY + D L+ Sbjct: 5 NKVQEYEKVLDLLDHFLKKYQNLGRNAIETSIVSLLKNNVTGLFFVGFYQVIDGILIDSI 64 Query: 57 ------LGPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV 109 +GP+Q I A RI G+G CG A +VQ EDV V +IACD + SEIV Sbjct: 65 LDNHLEVGPYQSTILATPRIEKGKGQCGQCWAEGKVQIQEDVKVCQNYIACDNETQSEIV 124 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 +P++ ++ VLDIDS RF + D + L+++V L Sbjct: 125 IPVIKNGVVLSVLDIDSEHLSRFDEVDSKYLQRIVEYL 162 >UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=Thermoplasma acidophilum RepID=Q9HJW5_THEAC Length = 141 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 1/127 (0%) Query: 26 ATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQ 84 + + L E+ +W GFY+LE L L F G K V I +G G+C AV +N Sbjct: 9 SQMQAACQYLKEKNPKYDWVGFYVLEHGKLKLEAFVGEKTDHVEINLGDGLCSLAVLKND 68 Query: 85 VQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV 144 + DV ++AC ++ SEIV+P+ + + IG +DIDS F+ EDE L + Sbjct: 69 IVNEYDVKSNPKYLACFPSTQSEIVVPVRYQGEPIGEIDIDSDKKAAFSKEDEAMLSSIA 128 Query: 145 AQLEKVL 151 + ++ Sbjct: 129 DLMAPLV 135 >UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RC53_AJECN Length = 133 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 25/128 (19%) Query: 24 FLATLANTSALLYERL-------TDINWAGFYLLED------------------DTLVLG 58 ++ LAN S+LL+ + +NWAGFY+ +D L+L Sbjct: 1 MVSNLANVSSLLWHAYAALPAPSSAVNWAGFYVRQDRFPSLVSAGSNTKETPGTQALLLD 60 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 PF GK AC I GRGVCGTA + + + DV ++GHIACDA S SEIV+P++V + Sbjct: 61 PFHGKPACQLIQFGRGVCGTAAEKQETVLVPDVFNWEGHIACDAESKSEIVVPILVNGES 120 Query: 119 IGVLDIDS 126 + + S Sbjct: 121 VNLWQHGS 128 >UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermoplasmatales RepID=Q6L0D7_PICTO Length = 145 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Query: 28 LANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI-PVGRGVCGTAVARNQVQ 86 L + + L NW G Y++ + L L + GK I +G G+C AV + + Sbjct: 16 LNDLCSYLRSENEKYNWVGVYVVNNGNLSLISYSGKRTEHEIINLGSGLCSLAVTKRMII 75 Query: 87 RIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 DV ++AC +NSE+V+P+ N+IIG +DIDS F ++DE+ + + Sbjct: 76 NEGDVRSNSDYLACFPETNSELVVPIEYDNKIIGEIDIDSDKKSAFNEDDERYISDICNY 135 Query: 147 LEKVLA 152 + ++++ Sbjct: 136 IARLVS 141 >UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HH02_ANADF Length = 153 Score = 126 bits (316), Expect = 3e-28, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 37 ERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD 95 +RL Y+L D L L F G + VRIPVG+G+CG + +V ++DV Sbjct: 37 QRLPRYTGVYLYVLRGDVLELDAFAGRETPHVRIPVGQGLCGLSARTREVVLVDDVAADP 96 Query: 96 GHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++AC+ + SEIV P++ + + +D+DS F D L + A LE V Sbjct: 97 RYLACNLETRSEIVFPILRGERYLAQIDVDSDHPAAFRTGDRAFLAEAAAILEPVF 152 >UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTU0_9FIRM Length = 491 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 11/167 (6%) Query: 1 MNKTEFYADLNRDFN---ALMAGETSFLATLANTSALLYERLTDINW-AGF-----YLLE 51 M+K + Y + A + T+ + N + +L E L I GF LL+ Sbjct: 147 MSKLDLYLMDLEQAHKKLAALYRITAIVQKTVNENEVLNEILEGITRELGFTCAAILLLD 206 Query: 52 DD--TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV 109 + L + +G VRIP+G+G+ G A Q+ + DV +I SE+ Sbjct: 207 KERQELTIKAHRGYSNNVRIPLGKGITGYAALTGQLIYVPDVRHDPRYIKGTHDGVSEVA 266 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 +PL+V N+IIGVLD+++ R D D LR L +Q+ +A ++ Sbjct: 267 VPLIVNNEIIGVLDVETNQAKRLQDYDLDLLRSLASQISMTIAHANH 313 >UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBA2A Length = 174 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 3/101 (2%) Query: 52 DDTLVLGPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 + L +GP+Q I A RI +G+GVCGTA + Q + +V +IACD + SE+V+ Sbjct: 74 NKVLEVGPYQSTILATPRIAIGKGVCGTAWQEAKTQVVNNVKECKNYIACDNETLSEVVI 133 Query: 111 PLVVK--NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 P+ K N+++ V DIDST RFT D + L ++ A + + Sbjct: 134 PVFNKTTNEVVAVFDIDSTTLNRFTPFDVEQLEKITALVYQ 174 >UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAG3_SPHTD Length = 1113 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 7/149 (4%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLGPFQGKIA 65 + ++ G T A + + + LL + + YL++ +T L P G + Sbjct: 788 HIVYKVAQMIGGVTDLSAFITDVTDLLRREI-GVGHLELYLVDPETGDLLGQTPGPGAVT 846 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS--NSEIVLPLVVKNQIIGVLD 123 VR+P G+G+ G R+ D H A S S + +PL + + IGV+ Sbjct: 847 GVRVPAGQGLVGWVARYQTPARVADTHNDVR-TMSMATSPMRSALAVPLAIDGRTIGVIS 905 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 ++S G FT+ DE L + QL +V+ Sbjct: 906 LESRRVGVFTENDEALLTIIAQQLAQVIE 934 >UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q1IL10_ACIBL Length = 584 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 21/179 (11%) Query: 1 MNKTEFYADLNRDFNALM---AGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL 57 + Y ++ +L+ + L N LL + Y + L+L Sbjct: 159 IENARLYTRVSNQAKSLLLLNEISRELTSIL-NLDQLLKRVGELLTRVIDYQMFS-ILLL 216 Query: 58 GPFQGKIAC-------------VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 P K+ IP+GRG+ G AV +N+ + DV +I + + Sbjct: 217 DPMGEKLQHRFSLRFQENIHLKHDIPLGRGLVGYAVGKNEAVLVPDVRKDSRYIMLNPET 276 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 SE+ +PLV K ++IGVLD++ T G FT++ ++ L L AQ+ + + + + + Sbjct: 277 RSELAVPLVYKGKVIGVLDLEHTKRGFFTEDHKRTLTTLAAQIAIAI---ENARLYEQI 332 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 53 DTLVLGPFQGKIAC----VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEI 108 L + G A RI +G+G+ G A + + DV +I + SE+ Sbjct: 57 QELRIRFQVGHPAEAIERTRIKIGQGITGAAAQTREPVLVNDVSKHPEYITSVSDVRSEL 116 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +P++VKN++IGV+DI++ FT+E + L + +V + + + V+ Sbjct: 117 AIPMIVKNKVIGVIDIEAPQKNYFTEEHSRLLTVIA---SRVAIGIENARLYTRVS 169 >UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025X3_SOLUE Length = 581 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 79/162 (48%), Gaps = 13/162 (8%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP-----FQG 62 A+++R+F++++ L+ ++ L + ++ + L + Sbjct: 186 ANISREFSSIL----DLNELLSKIAST-MHDLIAYDAFSILSVDHEAKALKHLFSIRYDK 240 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ++ +P+G+G+ G A +V R+ D +IA A SE+ +PL+++++++GV+ Sbjct: 241 RVNIDNVPLGKGLTGAAAESREVVRVHDTAKDPRYIASHADIRSEVAVPLILQDRVVGVM 300 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 D++S G F D+ + L L Q+ ++ + + +A +A Sbjct: 301 DLESDRVGYFNDDQVRTLALLAPQVA---SSVENARLYAELA 339 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 33/157 (21%), Positives = 67/157 (42%), Gaps = 8/157 (5%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLT-DINWAGFYLLEDDTLVLGPFQGKIA-- 65 D + +A + LAN + ++ + L D+ Y L + G Sbjct: 19 DFLLEVSASITQTLDLDQLLANVAEMVQKVLPYDLFAILLYSERRRDLRIRYAVGHRDDV 78 Query: 66 --CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 + I G G+ GTA AR + + DV ++ A +E+ +P+ + +++GV+D Sbjct: 79 VRNLSIAEGEGITGTAAARREPVLVSDVRNDPRYLNTVDAVRTELAVPMTARGKLVGVID 138 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 + ST +T+ D +R + A++ + D + + Sbjct: 139 LQSTRVDAYTEYDRALMRLIAARVSIAI---DNARLY 172 >UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z996_9GAMM Length = 607 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 19/163 (11%) Query: 6 FYADLNRDF---NALMAGETSFLATLANTS-ALLYERLTDINWAGFYLLEDDTLVL---- 57 Y D+ F + +A + +A T+ A L YL+ DD L+L Sbjct: 19 RYLDILHQFTLRQSSLAKLEDIVWNIAKTAIAEL-----GFEDCVVYLIADDGLMLKQVA 73 Query: 58 -----GPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLP 111 P +I + IPVG+G+ G +VQRI+D + +I D SE+ +P Sbjct: 74 AHGPKNPVDREIFNEITIPVGQGIVGHVAQTGEVQRIDDARLDPRYIEDDDFRLSELAVP 133 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + +IIGVLD + FTDED + + + + T Sbjct: 134 ISHDGRIIGVLDSEHHAAKFFTDEDVRLFTTIASLASTRIDTA 176 >UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHX7_ACIBL Length = 499 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 4/135 (2%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG---PFQGKIACVRIPVGRGVCGTA 79 L A++ + + A L + D VL F + + + +P+G+G+ G A Sbjct: 25 QLDEVLNQILAIVRDYFH-LEGASVLLFDKDRTVLRVRLSFGKQPSSMEVPLGKGLTGAA 83 Query: 80 VARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 139 V + + DV +I ++ SE+ +PL+V+++++GVLD S F E E Sbjct: 84 VHQKRPIYSPDVTKDKRYICAVESTRSELAIPLMVRDEVVGVLDCQSDQVDFFDTETEDL 143 Query: 140 LRQLVAQLEKVLATT 154 L Q ++ Sbjct: 144 LTLFATQASIGISNA 158 >UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9Z9_SPHTD Length = 883 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 14/162 (8%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGKIA--- 65 +A +A L+++ + +L++DD LVL Sbjct: 336 VNQLARRLAAVRDPDTLIATAVDLIHDLMGYSL-VYLFLVDDDTGELVLRAHSDPANPPG 394 Query: 66 --CVRIPVG-RGVCGTAVARNQVQRIEDVHVFDGHIAC--DAASNSEIVLPLVVKNQIIG 120 +R+ +G G+ A Q + DV +++ A + SE +P++ + +++G Sbjct: 395 LRNLRLRIGGPGIVAEVAATGQAIVVADVSKDPRYVSTPETANTRSETAVPILREGEVLG 454 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 VLD+ ST F D LR + QL L + + F Sbjct: 455 VLDLQSTRVDAFDAHDLTTLRTIADQLAVAL---ENARLFRE 493 >UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VRP5_DYAFD Length = 1182 Score = 102 bits (254), Expect = 6e-21, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 10/110 (9%) Query: 47 FYLLEDDTLVL------GPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG 96 YLL+ +T L GP K + + IPVG G+ GTA A Q I D Sbjct: 828 VYLLDKETNTLIQKAAYGPKSPKEYEILNPIEIPVGEGIVGTAAATGLPQIIGDTSKDPR 887 Query: 97 HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 +I D A SE+ +P++ + Q+IGV+D + + + + + + A Sbjct: 888 YIIDDQARFSELAVPILHEGQVIGVIDSEHPSKNFYNHDHVRAISTIAAI 937 >UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HS12_9SPHI Length = 399 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Query: 18 MAGETSFLATLANTSALLYERLTDINWAGFYLLED------DTLVLGPFQGK----IACV 67 + E L +AN + A YLL+D +GP I + Sbjct: 28 LETEEEILWDMANNCI----SILGFEDAVIYLLDDKGEYLEQKAAIGPKNPNGTAIINTI 83 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 +I VG G+ G A + ++D + +I D+ SEI +P++++ ++IGV+D +++ Sbjct: 84 KIKVGEGITGKVAATSLPIIVDDTRTNEDYIKDDSFRLSEIAVPIMLEGKVIGVIDSENS 143 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLA 152 F+D+ + L + + +A Sbjct: 144 QANYFSDQHLKILLAVASIYAGQIA 168 >UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S) n=5 Tax=Chloroflexaceae RepID=A5UV89_ROSS1 Length = 1017 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 10/147 (6%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK---- 63 D++ A++ L++ L+ ER F + ED L G + Sbjct: 413 QDVSERITAILE----LDQLLSSVVRLIRERFGYHTVHIFLIGEDGRLHFGASTVEGQSL 468 Query: 64 --IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + + + G G+ G+ Q + DV +I+ D+++ +E+ +PL ++IGV Sbjct: 469 ERLRRMVLQPGEGIVGSVALTGQPALVNDVRTDPRYISDDSSTRAELAVPLRYAEKVIGV 528 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLE 148 LDI S GRF D R L Q+ Sbjct: 529 LDIQSAEAGRFQRSDLFVTRTLADQVA 555 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE------IVLPLVVKN 116 V +P G G+ G + +ED + SE I +PL+ Sbjct: 299 PPLTVDLPSGDGLVGWMRQTGRSLLVEDFATEMDRLPARPRYQSERPPRSGIYVPLLDGG 358 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 ++IG + I S F +D + L L Q ++ Sbjct: 359 RVIGTISIQSYQPYAFDADDLRMLSLLADQAAVAISKA 396 >UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1I0_HERA2 Length = 1877 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 11/135 (8%) Query: 30 NTSALLYERLTDINWAGFYLLEDDT----LVLGPFQGKIA----CVRIPVGRGVCGTAVA 81 L + A YL++ T ++ G Q RIP GRG+ G A Sbjct: 618 EVVEQLKNTF-NYYHAHIYLVDQQTNEFVMMGGTGQAGRTLLARNHRIPQGRGLVGRAAN 676 Query: 82 RNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 139 V + DV G +A + +EI +P+++ ++++GVLD+ + T++D Sbjct: 677 TKDVVLVPDVSREAGWLANPLLPETKAEIAVPIMLGDEVLGVLDVQNAEVNSLTNDDATL 736 Query: 140 LRQLVAQLEKVLATT 154 L+ + AQ+ L Sbjct: 737 LQSIAAQVAVALENA 751 Score = 72.2 bits (176), Expect = 6e-12, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 59/170 (34%), Gaps = 20/170 (11%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQG 62 E A ++ L+ E L L R A YL ++ L L G Sbjct: 1455 ETVAQVSTSAAGLLNVEE----LLQTVVDLTKHRFGLY-HAHIYLYNPESQLLELAFGAG 1509 Query: 63 KIACVRIPVGRGV--------CGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPL 112 +I + GR + A + DV + + +E+ PL Sbjct: 1510 EIGRTMVKEGRTIPLDREQSLVAQAGRARRSIIENDVRSNPSFLPHPLLPETRAEMATPL 1569 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 + + ++GVLD+ S FTD+D + L +Q+ L + FA Sbjct: 1570 IAGSMLLGVLDVQSDQSNIFTDDDRKIQTTLASQIAIALQN---ARLFAE 1616 >UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Shewanella loihica PV-4 RepID=A3QE18_SHELP Length = 790 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 16/145 (11%) Query: 28 LANTSALLYERLTD------INWAGFYLLEDDTLVL---GPFQGK-------IACVRIPV 71 L+ +L+ + + YLL+ VL F K +A + + + Sbjct: 28 LSGVDEILWHLAQNVVSQLGFDDVVVYLLDPARGVLMQKASFGDKNPSGHEILAPIELKL 87 Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 G GV GT Q + D +F +I DA SE+ +P++++ ++IGV+D + Sbjct: 88 GEGVVGTVAKTKQPLNVTDTRLFPNYIVDDAPRLSELAVPMLMEGEVIGVIDTEHPKKNF 147 Query: 132 FTDEDEQGLRQLVAQLEKVLATTDY 156 +T E+ L L + + + Sbjct: 148 YTPHHERILFALASIAALKIHRANN 172 >UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=B9XEL2_9BACT Length = 580 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 45/94 (47%) Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 A +++ VG G+ G + + R DV +I SE+ +P++V +I G Sbjct: 79 PPNAAALKLRVGEGITGWVAIKGKTVRSGDVTQDPRYIQLRQNVRSELAVPMLVNGEIRG 138 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 V+++DS F++ D++ L L +V+ T Sbjct: 139 VINVDSDRNNAFSEGDQELLEALALSASRVIQNT 172 Score = 44.4 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 16/99 (16%) Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV-------- 109 G + + ++ + + GT V R + ++E+V + +EI Sbjct: 240 GAGEVYMKSPKLSMNESLLGTVVRRRKPIQVENVQTSSRY------QRAEIARQEGLVAL 293 Query: 110 --LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 +PL+ N+ IG L I + +F++E+ + L L Sbjct: 294 LSVPLIFANECIGTLSIYTGRPYKFSNEEVRILSALAEL 332 >UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3A8_9GAMM Length = 635 Score = 93.7 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Query: 47 FYLLEDDTLVL------GPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG 96 YL+++D L GP + ++I VG GV G + Q I D Sbjct: 90 VYLVDEDNEYLFQVAAHGPKNPDQRLIASPLKIKVGEGVVGHVACTGEAQIISDTRQDSR 149 Query: 97 HIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +I D SE+ +P+ + ++IGVLD + F+ ED Q + + A + T Sbjct: 150 YILDDEFRLSELAVPITHQERVIGVLDSEHPDADFFSTEDVQLFKTIAALASNRIDTA 207 >UniRef50_D1Y7A2 GAF domain protein (Fragment) n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y7A2_9BACT Length = 86 Score = 93.4 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 36/77 (46%), Positives = 43/77 (55%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + K E Y ++ AL A E LA L N A LY + +NW G YLL LVLGPF Sbjct: 10 LTKDERYRLISARLAALAAAERDPLANLCNFMAYLYWTVGGVNWVGLYLLRGGELVLGPF 69 Query: 61 QGKIACVRIPVGRGVCG 77 GK AC R+ G+GVCG Sbjct: 70 AGKPACSRLAPGKGVCG 86 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 44/88 (50%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 ++ +G+G+ G A + + + + DV +I SE+V P++V++ IIGV+ +D Sbjct: 72 ETKLKIGQGITGMAASTGKAKLVNDVSKDPDYIQVKEEIKSELVAPMIVEDDIIGVISLD 131 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLAT 153 S FT E + + L Q ++ Sbjct: 132 SNRLNAFTPEMLEIVSVLANQAGQIFKN 159 >UniRef50_Q1VQE8 Sensor protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VQE8_9FLAO Length = 800 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 39/85 (45%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 + +++ +G G+CG + I D +I D SEI +P++ +IG++D Sbjct: 78 LNPIKLKMGEGICGHVALTGIGEIIADTSKDPRYIVDDEDRRSEITVPILSDGIVIGIID 137 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLE 148 + F+D D + L + + L Sbjct: 138 SEYPEKDYFSDHDLKILNTIASMLS 162 >UniRef50_UPI000190977C putative GAF sensor protein n=1 Tax=Rhizobium etli CIAT 894 RepID=UPI000190977C Length = 126 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 1/67 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPF 60 +K FY +L L+ GE +A AN SAL+++ + D+NWAGFY L ++ LVLGPF Sbjct: 60 DKRAFYRELAGQLQGLLEGERDAVANAANLSALVFDLVPDLNWAGFYFLRSENELVLGPF 119 Query: 61 QGKIACV 67 QG++ACV Sbjct: 120 QGRVACV 126 >UniRef50_A3JMI9 Sensor protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JMI9_9RHOB Length = 448 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 5/112 (4%) Query: 58 GPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 PF I ++I G G+ G + ++D+ +IA + SEI +PLV+ + Sbjct: 78 NPFGRNIINPLKIQFGDGITGQVAENRKAVIVDDLLKDQNYIADTQLARSEICVPLVIGD 137 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLV----AQLEKVLATTDYKKFFASVA 164 +++GV+D + F + L + A+LE + + K+ + +A Sbjct: 138 RVVGVIDSEHPEPNAFGKAELDVLTTVAAMTSAKLELLAESDRSKRRYHEIA 189 >UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Roseiflexus RepID=A5UX58_ROSS1 Length = 785 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 5/156 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACV- 67 L MA E A + YL + D L L G + Sbjct: 267 HLIGQVREAMAREIDLPALFRTVVESIAATFGYSL-VCLYLRDGDELALQHQVGYAVQLD 325 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 RIP GRGV + + I DV I SEI +PL ++++IG L+I+ST Sbjct: 326 RIPFGRGVISRTILSGRATLIADVRSDPDFIGVMDNIVSEICVPLRDQDRVIGALNIEST 385 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 TD+D + + +L + + + + + + Sbjct: 386 DSVVLTDDDLRVMTELAEHINVAI---ERARLYEQL 418 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 59/179 (32%), Gaps = 19/179 (10%) Query: 1 MNKTEFYADL---NRDFNALMAGETSFLATLA--NTSALLYE---RLTDINWAGFYLLED 52 + + Y L + + L T L + E L + L + Sbjct: 409 IERARLYEQLWRRVQQLDVLYDIMTDITGNLDRDTVLKAIVERTIALLRVTHGMIALYDP 468 Query: 53 DTLVLGPF-----QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE 107 + L A +RI G GV G Q + D + ++G S Sbjct: 469 EQNNLRIHYSVGMNRDYAGMRIAPGEGVIGRVAQTRQPLVVYDYNQWEGRTPLFQEMPSS 528 Query: 108 IV--LPLVVKNQIIGVLDI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 V +PL+ +++IG L D + FTD+D + L Q + + FA V Sbjct: 529 NVLGVPLLSGDELIGTLSAGDFNLKRVFTDDDIRLLSIFAQQATIAIKN---ARLFAEV 584 Score = 40.2 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 19/121 (15%) Query: 51 EDDTLVLGPFQGKIACVR---IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-- 105 + L + GK A R I + G+ G +ED ++G + S+ Sbjct: 116 DGTLLEMKIGIGKHARNRGSVIAISEGISGRVCQTGAPMMVEDYRNWEGRVRSIDTSDFG 175 Query: 106 SEIVLPLVVKNQIIGVLDI--DSTVFGRFTDEDEQGLRQLVAQLEKVLA----TTDYKKF 159 + I +PL +++ IIGVL + D+ F +V L + D + Sbjct: 176 TVIAVPLRLRSAIIGVLGVSYDTPTLEGF--------ESIVTLLMRFAELAAIAIDNARL 227 Query: 160 F 160 + Sbjct: 228 Y 228 >UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVW4_DYAFD Length = 1192 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 44/84 (52%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + + + +G G+ GTA + I D +IA DA+ SE+ +P++ + ++IGVL Sbjct: 864 TVDPLELELGMGIVGTAGKTKRAINISDTSRDPRYIAMDASKFSEVAVPILHEGKLIGVL 923 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQ 146 D + + FT++ + L + + Sbjct: 924 DSEHSEKRFFTEDHTRALVTIASI 947 >UniRef50_Q3IKM7 Putative orphan protein ; putative GGDEF protein n=3 Tax=Alteromonadales RepID=Q3IKM7_PSEHT Length = 789 Score = 84.1 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 39/87 (44%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 I G+ G + I DV +IA + + SEI +PL+ K+ ++GV+D + + Sbjct: 88 IRFDEGITGYVATTAKAIMIGDVTKDSRYIADERPAQSEICVPLIYKDHVLGVIDCEHPI 147 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLATTD 155 FT+ + L + L + + Sbjct: 148 KNYFTNSHLEILTTVAHLLSAKINQVN 174 >UniRef50_Q5SJL9 GGDEF domain protein n=4 Tax=Thermaceae RepID=Q5SJL9_THET8 Length = 750 Score = 83.3 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 13/167 (7%) Query: 4 TEFYADLNRDFNALMAGE--TSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + + L AL + L +L A L ER G ++ E L L + Sbjct: 103 AQTHRLLAEALEALPKAQNREELLKSLPERLARLGER----GHVGVWVPEGQGLRLLAAR 158 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAASNSEIVLPLVVKNQIIG 120 ++ IP G GV G A + + DV +IA D + +E+ LPL + +++ Sbjct: 159 PPLSVETIPYG-GVVGRAYREGRPVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVA 217 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLE---KVLATTDYKKFFASVA 164 VL+++ F +E ++GL++ + LA + ++ A ++ Sbjct: 218 VLNLERDRP--FPEELQEGLKRFAQAVSLQLSRLADEEERRLVAELS 262 >UniRef50_B1ZYQ1 Sensor protein n=2 Tax=Opitutaceae RepID=B1ZYQ1_OPITP Length = 582 Score = 83.3 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 40/77 (51%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + +G G+ G V + + DV +IA +A+ E+ +P+ ++IGV +++S Sbjct: 75 LKLGHGITGWCVLNARSLLVPDVSTEPRYIAERSATRCEMAVPMRDGERVIGVANLESDR 134 Query: 129 FGRFTDEDEQGLRQLVA 145 G F+ ED L QL A Sbjct: 135 RGGFSAEDLALLEQLTA 151 Score = 45.2 bits (106), Expect = 7e-04, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 9/100 (9%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVKNQIIGVLD 123 +P+ + A + DV G + D +S + PL+ + ++ GVL Sbjct: 241 LPIKSSLVAAAFHTKRQVEFSDVQS-PGFGGLADLPDDPTLHSALYTPLLHEGEVFGVLA 299 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + RF D++++ L + L + +A V Sbjct: 300 VFLDRVHRFDDDEKRACASLASLGAVALQN---ARLYARV 336 >UniRef50_A8UJB8 Sensor protein n=2 Tax=Flavobacteriales RepID=A8UJB8_9FLAO Length = 691 Score = 82.2 bits (202), Expect = 6e-15, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 11/156 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---GPFQGKIA 65 D+ D + G+ + + E L D N YL++++ L + K+ Sbjct: 297 DMINDVAKAILGKMDIYEIAKEITNNIAEYL-DTNDCIIYLVDNENNSLEQIAAYGSKLN 355 Query: 66 -------CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 + +P+G G+ G + + I D ++ D SEI +P++ + Sbjct: 356 DKNEIKDKIVMPLGEGIVGCVARSGKAEIINDTSKDIRYVVDDERRFSEIAVPIISDGNV 415 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 IG++D + FT + + L+ + + + L + Sbjct: 416 IGIIDSEHISKSYFTKKHLRTLKNIASLVAMQLKSA 451 >UniRef50_A8UPH1 Putative orphan protein ; putative GGDEF protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UPH1_9FLAO Length = 400 Score = 79.1 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 63/169 (37%), Gaps = 11/169 (6%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---- 57 +K ++D+ F+ + S L + +L I+ YLL++ V+ Sbjct: 14 SKDLKFSDVLMQFSESLLDINSEDEILWMLAKNCISKLGFID-CVVYLLDESRNVMVQKA 72 Query: 58 --GPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLP 111 GP K V P+G G+ G + I D + D SE+ +P Sbjct: 73 AYGPKNPKGFEISEPVERPIGFGIVGHVAKTGNAELINDTSNDVRYKMDDEFRFSEVCVP 132 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 +++ ++IG++D + F++ L + + + K + Sbjct: 133 IIIDGEVIGIIDCEHPEKNFFSEHHLHMLLTISSICAIKIKGVRTNKKY 181 >UniRef50_D1C7L1 Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7L1_SPHTD Length = 888 Score = 79.1 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 11/153 (7%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLGPFQGKIA- 65 L + +A ++ L ++L D L + + +++ P Sbjct: 568 LLQRISAEVSALLDIDRFLRRLVSVLEAEFPDSV-CDILLRDPERGYLMLVTPDSEYPNL 626 Query: 66 -----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAASNSEIVLPLVVKNQII 119 + RG+ G Q + D ++ SE+ +PL++ + I Sbjct: 627 TVLSGTYILEEDRGIAGWVARHGVSQNVSDTRKDPRYVVRGHQPMRSELAVPLLIDGRCI 686 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 GV++++S F+ D+Q L + + + + Sbjct: 687 GVINLESPHAAAFSLTDQQVLEMIGTYVAQAME 719 >UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3A2_HERA2 Length = 995 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 41/87 (47%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 R+P+G G+ G + + DV + +E+ +P+ V Q++GVLD+ S Sbjct: 475 RLPLGLGIVGHVAVTGEPMLVNDVREEPRFLPDQHGIAAELAVPMRVGQQLLGVLDVQSE 534 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATT 154 +G F + D ++ L Q+ + + Sbjct: 535 SYGAFDENDFFVVQTLADQIAIAIDSA 561 Score = 52.9 bits (126), Expect = 3e-06, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 48/142 (33%), Gaps = 15/142 (10%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIP 70 L+ GETS + +N L+E E V V +P Sbjct: 255 VDSLCQLVYGETSKVVDTSNFRLGLFEGR---------FFELKVRVQDGHHEPPLRVELP 305 Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE------IVLPLVVKNQIIGVLDI 124 RG+ + +ED + +E + +PL+ ++++G + I Sbjct: 306 NDRGIVSWIRRTGRSLLVEDFDSEMDRLPAQPTYQAEYPPRSGVYIPLMTGDEVLGTISI 365 Query: 125 DSTVFGRFTDEDEQGLRQLVAQ 146 S+ F +D + L + Q Sbjct: 366 QSSEPRAFDTDDLRLLSLIADQ 387 >UniRef50_B5JLN9 Sensor protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLN9_9BACT Length = 571 Score = 77.6 bits (190), Expect = 2e-13, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 59/154 (38%), Gaps = 17/154 (11%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 + Y + L A + + ++ + ++LL LG + K Sbjct: 29 DAYMIITEQLQRLFAPKAAAISLINPNTSLLEIEY----------------ALG-YPSKT 71 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 + + I G+G+ G A + DV ++ S+IV P++ IIGV+ + Sbjct: 72 SELGIHPGKGLSGRAAFNGEPILCNDVENDTRYVKLIEGVRSKIVAPMISSGHIIGVISV 131 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 D FT D L + + +VL + Y++ Sbjct: 132 DRDTPNAFTQRDLNQLVYIADESSQVLQSVWYRR 165 >UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase n=3 Tax=Chloroflexus RepID=B9LCJ4_CHLSY Length = 731 Score = 76.8 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 6/109 (5%) Query: 51 EDDTLVLGPFQGKIACVRIPVGR----GVCGTAVARNQVQRIEDVHVFDGHIACDA--AS 104 E + L+L G+ A R+ + G+ G A ++ R EDV ++ Sbjct: 399 EANELILVASAGRYAPERVGYRQHINLGLVGRAARSGRIVRAEDVAAEADYLGLSERLDI 458 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 SE+ +PL+ + +GVL+I+S T+ED L + L + Sbjct: 459 RSELCVPLISNGKTLGVLNIESPERAGLTEEDAAVLETVADMLAGAVEN 507 Score = 57.5 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 13/166 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + K + A+L R A + L T L L +TL++ Sbjct: 184 LAKEQLLAELGRAVGATL----DLDTILHQTIDRLAAAFGS--GLVALLDNQETLMVVAA 237 Query: 61 QGKIACV---RIPVGRGVCGTAVARNQVQRIEDVHVF-DGHIACDAASNSEIVLPLVVKN 116 + + ++P+ G V Q ++D + S I+ PL Sbjct: 238 APPLDTLIGRQLPLLSGSLAWVVQSGQPFVVDDCRLHAPDMALFGPDIASCIIAPLRSGG 297 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 ++IG+L + S G F+DED L + AQ+ + + + +A Sbjct: 298 RVIGMLSVVSRQAGVFSDEDVDLLEAIAAQVSGPVVS---ARLYAE 340 >UniRef50_D1C8Q9 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C8Q9_SPHTD Length = 747 Score = 76.4 bits (187), Expect = 4e-13, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 44/92 (47%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 +R P+ RG+ G A+ N+ + DV +I D A SE+V + + +GVL+I++ Sbjct: 487 LRWPIDRGITGRALRENRSLLVHDVRSDPDYIEIDPAIRSELVAVIRSAGRPVGVLNIET 546 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 + D+D + L +L ++ + Sbjct: 547 DISHPLDDQDMALAEGIAVHLGLLLDQMEFTQ 578 >UniRef50_B8GBU0 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBU0_CHLAD Length = 1016 Score = 75.3 bits (184), Expect = 6e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 13/159 (8%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 + + F + L + LL+ ++E D L++ G++ + Sbjct: 477 QVLQQFTVRIGAVRDIDQLLDEATQLLHRTFGYYQ-VLISVIEHDQLIVRAAYGRLMHCQ 535 Query: 69 --------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSEIVLPLVVKNQ 117 +P G+ G + Q + DV + ++ C A+ +E+++P++V + Sbjct: 536 SSEQVFPPLPCDVGISGWVIRHAQPAIVNDVLRDERYV-CHPFLPATAAEMIVPILVDER 594 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 + GV+ I+S V G F D + + + +A + Sbjct: 595 VFGVITIESDVRGVFAQSDLDLVTAMAHLIGVTIANLQH 633 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 89 EDVHVFDGH--IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 DV G + S I +PL V IG L ID + FT ED + Q Sbjct: 396 PDVQQLPGWQKVPDSEIIRSWIGVPLRVDQTTIGFLTIDKWIPNAFTAEDVGTAQMFGEQ 455 Query: 147 LEKVLATT 154 + V+ Sbjct: 456 VAAVINNV 463 >UniRef50_D2TVU1 Putative uncharacterized protein n=1 Tax=Arsenophonus nasoniae RepID=D2TVU1_9ENTR Length = 58 Score = 75.3 bits (184), Expect = 8e-13, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 33/58 (56%) Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 + LG F+ K+ + + G N+VQRI DVH F GHI CD+ S SE VLPL Sbjct: 1 MCLGLFRVKLHVCVLRKEKVFVGPLFIENRVQRIADVHSFAGHITCDSLSRSERVLPL 58 >UniRef50_Q1VT20 Sensor protein n=2 Tax=Flavobacteriaceae RepID=Q1VT20_9FLAO Length = 969 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 11/146 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV---LGPFQGKIA 65 DL + + G+T + + D + YL++ + + + K+ Sbjct: 575 DLINNLTKSILGKTDIIEIAWEIVNNI-AAYLDTDDCVIYLVDHEKETTEQIAVYGAKLN 633 Query: 66 C-------VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 + +P G+G+ G+ + Q I D D ++ + SEI +P++ Sbjct: 634 NDSQIINKLYLPKGKGIVGSVAKSGKSQLINDTSKDDRYVIDEERRFSEITVPIMSNGIA 693 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLV 144 IG++D + +T E + L + Sbjct: 694 IGIIDSEHKDKNHYTQEHIKTLESIA 719 >UniRef50_C7RAL6 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAL6_KANKD Length = 1012 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 60/150 (40%), Gaps = 8/150 (5%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGPFQGKIACVR- 68 + +A L ++ +L + A F Y L+ ++ + + Sbjct: 14 IQQLAVSIAKADDLQGMLDRIVEHIFSQLESFDCALFLYEASHQDLICYSYRKQGISEKE 73 Query: 69 ------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + +G G+ G Q R++D + + SE+ +P+V+ +++IGV+ Sbjct: 74 SFKLKPVKLGSGIIGYTAKNRQTMRVDDTDQSKVFVQDLQKNYSELCVPIVLNDELIGVI 133 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 D++ FT +D + + + + + ++ Sbjct: 134 DMEHPDKAFFTKQDARYVETIASMVAYLIK 163 >UniRef50_D1B6W8 Diguanylate cyclase with GAF sensor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6W8_THEAS Length = 789 Score = 74.5 bits (182), Expect = 1e-12, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 47 FYLLEDDTLVLGP----FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA 102 Y +DD L FQ + +P GRGV A + ++DV ++ A Sbjct: 160 LYRRDDDVLSQVAASDNFQ---LGLELPRGRGVVWRAFMEGRPVLVKDVSSDPAYVPSGA 216 Query: 103 ASNSEIVLPLVVKNQIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 SE+ +PL + + +GVL+++S R D + + + L V+++ + ++ Sbjct: 217 EVRSEVAVPLQIGGRRLGVLNVESPFELKR---RDLWFVSIIASLLSYVISSMEARR 270 Score = 66.4 bits (161), Expect = 4e-10, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 14/159 (8%) Query: 14 FNALMA--GETSFLATLANTSALLYERLTDINWAGFYLLEDDTL------VLGPFQGKIA 65 AL++ G S L L + E + + + YLL D + +L F+G Sbjct: 299 AEALLSIMGAPSALMDLDGLCRRIVEAVASMGYPNVYLLVQDQVDGDRVFILKAFKGLPQ 358 Query: 66 CVRIPVG-----RGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK-NQII 119 + V G+ G V D + SE+ +P++ +++ Sbjct: 359 SDSVRVLSPNRLEGIWGWVVREASPYLCNDTSCDPLYRTGHERIRSELAVPILSSAGEVV 418 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 G+LD+ GRF ED + + L +L + + + Sbjct: 419 GLLDLQDHRKGRFNQEDVHLMEDVCRYLGFMLEHSYHVR 457 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 31/80 (38%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + G + A +Q DV I S++ +P+ + +I GVL I+ Sbjct: 533 LSKGTSLVARAARNGVMQNTRDVSKAREWIPLIPTVRSQLDVPIAIHGRIYGVLCIEDDH 592 Query: 129 FGRFTDEDEQGLRQLVAQLE 148 G F ++E+ L + Sbjct: 593 VGAFGPQEEETFSILAGHVA 612 >UniRef50_B0SAB0 Transcriptional regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SAB0_LEPBA Length = 498 Score = 72.9 bits (178), Expect = 4e-12, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 41/84 (48%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 ++P GV G A + ++ + DV + ++ SE+ +PL+ ++ +GVL+++S Sbjct: 73 KLPFNLGVTGRAASSREIIYVPDVTLDKDYVKLIETVRSELAIPLLTRDSTVGVLNLESD 132 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVL 151 F+ + +QL V+ Sbjct: 133 KVNFFSPDIINQATLFASQLTIVI 156 >UniRef50_B8G854 Sensor protein n=3 Tax=Chloroflexus RepID=B8G854_CHLAD Length = 880 Score = 72.2 bits (176), Expect = 5e-12, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 55/149 (36%), Gaps = 15/149 (10%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLEDD-------TLVLGPFQGKIACVRIPVGRGV 75 L N+ +L + A L E++ +LG VR +G+G+ Sbjct: 346 DLDLILNNSLEMLAHIVQA-EHASILLTEEESPSLLATRAILGRKVTPDNTVRFAIGQGI 404 Query: 76 CGTAVARNQVQRIEDVHVFDGHIACDAASN----SEIVLPLVVKNQIIGVLDIDSTVFGR 131 G A Q + DV D + ++ S I +PL V+ +++GV+ + + Sbjct: 405 AGWAAQHGQTVLVNDVQQDDRWVTIPGSNRKREGSMIAVPLFVQGEVLGVMTLSHSRPNF 464 Query: 132 FTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 F + + L + + + K + Sbjct: 465 FHEGHVRLLNACAGTIAIGI---NNAKLY 490 >UniRef50_B3E0S0 Sensor protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0S0_METI4 Length = 513 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 1/90 (1%) Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFG 130 VG G+ G + RI+DV +++ D SE+ +P+ ++ IIGVL++DS Sbjct: 21 VGEGITGWVATSGKPMRIDDVSKDWRYVSIDPRIQSELAVPIEWQSTIIGVLNVDSHEKS 80 Query: 131 RFTDEDEQGLRQLVAQLEKVLA-TTDYKKF 159 +T E E+ + L A+ + L+ +++K Sbjct: 81 HYTLEHEKEMEALAAEAAQWLSYAWEFEKL 110 >UniRef50_A7NNT0 Sensor protein n=2 Tax=Roseiflexus RepID=A7NNT0_ROSCS Length = 911 Score = 70.6 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 59/155 (38%), Gaps = 16/155 (10%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQG 62 E + + ++ + G+ +L + L+ + LL+ +T LV G Sbjct: 368 ETLNAIALEVSSTLDGDEIMSNSLKTLAKLI-----GVQHGSIMLLDRETDQLVDRAVLG 422 Query: 63 KIACV---RIPVGRGVCGTAVARNQVQRIEDVHVFDGHI---ACDAASN---SEIVLPLV 113 K V R +G+G+ G + ++DV D + S I +PL+ Sbjct: 423 KSDNVGYVRFSLGQGIVGWVAHHRKPLIVDDVTADPRWTPPPIDDPLAKRQGSMIAVPLI 482 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 ++++GVL + F +E + L Q+ Sbjct: 483 AHHEVLGVLVLSHEQPAYFREEHLRLLDASAKQIA 517 >UniRef50_Q1K0H7 Sensor protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0H7_DESAC Length = 532 Score = 70.2 bits (171), Expect = 2e-11, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 44/107 (41%), Gaps = 3/107 (2%) Query: 51 EDDTLVLGPFQGKIACV---RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE 107 + LVL G ++ +G G+ G A I++V +I + Sbjct: 64 DGKELVLAASYGYPDPAIKRKLQMGEGIMGRVAASAAPVLIDNVTEDHDYIPGIPDARCA 123 Query: 108 IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + +PLV ++++IGV +++S G F ED L + A + Sbjct: 124 LCVPLVARDRVIGVFNVESHQEGTFHSEDVAPLMTMAAHAAIAIENA 170 >UniRef50_Q7NWI5 Putative uncharacterized protein n=2 Tax=Chromobacterium group RepID=Q7NWI5_CHRVO Length = 240 Score = 69.5 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 28/158 (17%) Query: 16 ALMAGETSFLATLANTSALLY--ERLTDINWAGFYLL----EDDTLVLGPFQGKIACVRI 69 AL A A L N SALL +W G Y + LV ++G + Sbjct: 75 ALGAETPETTAALVNLSALLDSVNAKIGADWLGIYRKIGAGKGAVLVKLAYKGMESRAEF 134 Query: 70 PVGR-----------GVCGTAVARNQVQRIEDVHVFD----GHIACDAASNSEIVLPLVV 114 P+ G+ G AV ++DV + G+ CD SEI LP++ Sbjct: 135 PLTEEFAEFSNNSRVGLTGWAV------VVDDVEQWRAEGGGYYECDPKVKSEICLPVLH 188 Query: 115 -KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + ++G++D +S G FT E + L L L ++L Sbjct: 189 SDDNVLGIIDAESFAAGHFTPERQVWLAALAIVLPQLL 226 >UniRef50_C1XIF1 Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Meiothermus RepID=C1XIF1_MEIRU Length = 755 Score = 68.3 bits (166), Expect = 9e-11, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 61/160 (38%), Gaps = 8/160 (5%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 L + ++ A LA+ L + A +L + TL L + Sbjct: 112 QLLAEALEVLPALEHRQALLASLPEHL-TKFVSGGHASVWLPQKHTLRLLASVPTLGAQE 170 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-ASNSEIVLPLVVKNQIIGVLDIDST 127 I GV G A + Q + DV IA + +E+ LPL + +++ V ++++ Sbjct: 171 ISAE-GVVGRAFREGRPQYVPDVRQEPSFIAAPGINTLAELALPLFERGEVVAVFNLETE 229 Query: 128 VFGRFTDEDEQGLRQLVAQLE---KVLATTDYKKFFASVA 164 F E+ GL + + LA + ++ + ++ Sbjct: 230 RP--FWPEEVDGLIRFAETVSLHLDRLADLEARRLLSDLS 267 >UniRef50_A0Z7X2 Response regulator n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7X2_9GAMM Length = 365 Score = 67.9 bits (165), Expect = 1e-10, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 46/96 (47%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 + + I +G GV G Q I +++ D ++ + SE+ +P++ +++ GVLD Sbjct: 80 LNPLTIEMGVGVTGNVALTKQSALISNMNDHDNYVTDIEPALSELCVPIMFGDRLYGVLD 139 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +S + + +ED++ + + LA + + Sbjct: 140 SESKIALGYGEEDKKVFETIARMIAAKLALIEQTEL 175 >UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UTQ7_ROSS1 Length = 711 Score = 67.6 bits (164), Expect = 1e-10, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 71/170 (41%), Gaps = 24/170 (14%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 ++ E Y + + + E A + L+ E D+ + + + Sbjct: 196 LDTREVYRLVVQQLSDYFHVE-------AGSLLLVDEATGDLEFV---------MTIEGG 239 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG---HI--ACDAASNSEIVLPLVVK 115 + K+A R+P G+GV G V + + + DV I A ++ S + +P++ K Sbjct: 240 EEKLAGFRVPAGQGVVGHVVRTGRWEIVHDVSRDPRFYRQISEATGFSTRSILCVPMIAK 299 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 ++IG +++ + + G F +ED L ++ A + + + + F V Sbjct: 300 GRVIGAIELLNKIGGDFDEEDALRLMRMAAFIAVAI---ENARLFQQVTA 346 >UniRef50_A6LSE0 Diguanylate cyclase n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LSE0_CLOB8 Length = 633 Score = 66.8 bits (162), Expect = 2e-10, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 70/173 (40%), Gaps = 13/173 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYE------RLTDINWAGFYLLEDDT 54 ++K + + N+++ + +A+ LL T+ ++ +LLE D Sbjct: 99 IDKINRSIRILKFENSILYDTAFAIYNMASIQELLDTILVRLVTHTNADFGLIFLLEKDE 158 Query: 55 LVLGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 L L ++ +G G+ G + Q +DV +I C + + +I + Sbjct: 159 LKLKSHSNVLYEELEKTTFRIGEGLVGWKFYKGQGLLTDDVQKDFRYIRCISDTRGQITI 218 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 P+ + +I+GVL + S F + D + + + ++ + + K A + Sbjct: 219 PIKMHEKILGVLVLGSKKDSDFGESDFKLINTISGEIGLAI---NNAKLTAKL 268 >UniRef50_D2R587 Putative PAS/PAC sensor protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R587_9PLAN Length = 577 Score = 66.4 bits (161), Expect = 3e-10, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 35/81 (43%) Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF 132 GV G A + ED ++ + S + +PL + N++IG +++S G F Sbjct: 267 NGVTGFVAATGKSYLCEDTASDPMYLQGVKDAKSSLTVPLKLHNEVIGTFNVESPQPGAF 326 Query: 133 TDEDEQGLRQLVAQLEKVLAT 153 +D D Q L L L T Sbjct: 327 SDSDLQFLEIFCRDLAVSLNT 347 >UniRef50_B1ZF40 Signal transduction histidine kinase n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZF40_METPB Length = 929 Score = 66.0 bits (160), Expect = 4e-10, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 53/149 (35%), Gaps = 6/149 (4%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIA---C 66 L R A+ A + A L + A + E + LV G +A Sbjct: 182 LLRTQGAVAAADGDLDAILHALVEGVLTATPQAEGAVIEMREGEELVYRATAGTLADKRG 241 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPLVVKNQIIGVLD 123 +R+P+ + G + + + DVH + S I++P++ + GVL Sbjct: 242 LRLPLQGSLAGACLTGGEPLLVPDVHTDPRVVRDLVEVLRLRSCILVPVLRNGEAAGVLK 301 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 + S+ F + D + + LA Sbjct: 302 LQSSRPSAFAEADLGSAQVFAGTVSSGLA 330 >UniRef50_A2U1J4 Sensor protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U1J4_9FLAO Length = 567 Score = 65.6 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 55/158 (34%), Gaps = 7/158 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K +N +++ E + + L N YL+ DT L P Sbjct: 172 EKQLVLDLINDTAKSILGKE-DVNEIAWEITNKITGYLNTDN-CVVYLINSDTKFLEPIA 229 Query: 62 GKIA-----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 ++ VG G+ G+ + I D + D +I+ S I +P++ Sbjct: 230 TYNTDKINDRPKLSVGEGILGSVAKSGISEIINDTSLEDRYISFGKEKLSIISVPIINDK 289 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +IIGV+D T F E L + + L + Sbjct: 290 EIIGVIDARHTQKDFFKPEQINTLESVANLVAMQLKSA 327 >UniRef50_Q1IVB0 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IVB0_ACIBL Length = 1125 Score = 65.6 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 9/140 (6%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPF 60 + Y + + + L+ + + + + G +L+ + + Sbjct: 558 RRARYLSFLNNVSQTAISSQNAEEMLSEIVGQIQKNF-NYDHIGIGILDYATKEIEIKAE 616 Query: 61 QGKIACV---RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD-AASNSEIVLPLVVKN 116 G A R+ +G GV G ++D H+A S S + +P+ Sbjct: 617 AGTTAHAKGKRVALGVGVLGRVARTGDTSLVQDTAA--THLAGILPDSRSALCIPITYAE 674 Query: 117 QIIGVLDIDSTVFGRFTDED 136 Q++GVL+I+S FT+ED Sbjct: 675 QLLGVLNIESRRENAFTEED 694 >UniRef50_B3E1R0 Diguanylate cyclase with GAF sensor n=1 Tax=Geobacter lovleyi SZ RepID=B3E1R0_GEOLS Length = 356 Score = 65.6 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 72/177 (40%), Gaps = 19/177 (10%) Query: 5 EFYADLNRDFNALMAGETSFLA------TLANTSALLYERLTDINWAGFYLLEDDTLVL- 57 E A N + +L+ + ++ L + + + L W L++++T L Sbjct: 9 ELLARRNAELASLLEIGKTLISSLELREVLQSIMSQVERLLQPKTW-SLLLVDEETNELC 67 Query: 58 -----GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD---GHIACDAA--SNSE 107 P ++ +R+ +G G+ G Q I DV H+A + +S Sbjct: 68 FEIAVSPVAQELKGIRLKMGEGIAGWVAQTGQPLLIPDVSQDPRFANHVAEEVEYPVSSI 127 Query: 108 IVLPLVVKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + PL ++++++GV+++ +T+ R F D+D L + + + + + Sbjct: 128 LCAPLKIRDRVLGVIELINTLGERTFDDDDLPLLGAVADFAAIAIDNARNYRRVSEL 184 >UniRef50_A9B7Z7 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B7Z7_HERA2 Length = 692 Score = 65.2 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 45/144 (31%), Gaps = 3/144 (2%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVR 68 L ++ + + Y D L L G + Sbjct: 37 LLEQTQTILGQNLPLDMLYRQIVTAIARSFANSL-ISIYAAHTDILQLQCQHGFGHNPEQ 95 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + +G+ G Q I V I S I +PL+ + Q++GVL ++S + Sbjct: 96 LSFQQGIVGRCARTKQAYLIAYVDQDPDFIRSHPHIQSSICIPLLAEQQLLGVLMVES-I 154 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLA 152 D + L + QL +A Sbjct: 155 VDTLNQADAEILANVCQQLSNAIA 178 >UniRef50_B9LIX5 Sensor protein n=4 Tax=Chloroflexus RepID=B9LIX5_CHLSY Length = 862 Score = 65.2 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 66/182 (36%), Gaps = 24/182 (13%) Query: 6 FYADLNRDFNALMAGETSFLATLAN-------TSALLYERLTDINW---AGFYLLEDDTL 55 Y R L+ + +A L N L+ ++L D+ YLL+++ L Sbjct: 179 LYRSTQRRLEQLLMVQR--VAALINSTLQTDLICRLVVQQLHDVFGYQLVSMYLLQNEAL 236 Query: 56 VLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV 114 L G I + GV G V + + + D + + I +PL Sbjct: 237 HLQAVVGYDRLLPVIQLHEGVAGRVVRNGRAEFVRDAQHDPDFLEVMPDTKQCIAVPLRY 296 Query: 115 K-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL----------EKVLATTDYKKFFASV 163 + + +GV+ ++S DED L L Q+ E++ T + + + Sbjct: 297 ETAEPVGVIIVESQGNPALDDEDFFLLSLLADQIGVAFFNSLLFERLRDTNERFRLLIEL 356 Query: 164 AG 165 AG Sbjct: 357 AG 358 >UniRef50_B8G9Y3 Adenylate/guanylate cyclase with GAF sensor(S) n=5 Tax=Chloroflexaceae RepID=B8G9Y3_CHLAD Length = 981 Score = 64.9 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 12/140 (8%) Query: 31 TSALLYERLTDINWAGFYLLEDDTLVLGPFQG----KIACVRIPVGRGVCGTAVARNQVQ 86 +L+ + L + + LV+ G + V I G+ G + Sbjct: 333 LVQMLHHQFGYPL-VALVLRQAEQLVVQSVAGTQQFETGKVVIGAESGISGWVCRNRKPL 391 Query: 87 RIEDVHVFDGHIAC---DAASNSEIVLP-LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 142 RI+DV I C +A S + +P L+ + ++G +++ S F+ DE + Sbjct: 392 RIDDVTQDARFIPCLPDEARMRSALSVPVLLPREGVVGTIELRSPQLAAFSPNDEAIVSA 451 Query: 143 LVAQLEKVLATTDYKKFFAS 162 + QL + + FA+ Sbjct: 452 IANQLAIAIYN---ARLFAN 468 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 8/143 (5%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 KTE L+RD + + + L + + + I GF +ED L L Sbjct: 137 KTELLLHLSRDLGSSIDLDVLLTGFLNHLADAVGAVRASIILTGF--VEDKIL-LYSSSR 193 Query: 63 KIACVRIP--VGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSEIVLPLVVKNQ 117 A + V GV G A+ I D + + S + +P++ N+ Sbjct: 194 YPAVAELQDIVRYGVAGLALRERSPILIADTRLDQRWLVTSPVHNDVRSVVAMPIIRDNR 253 Query: 118 IIGVLDIDSTVFGRFTDEDEQGL 140 + GV+ + G FT E + L Sbjct: 254 VWGVITLVHHTPGYFTSEHLELL 276 >UniRef50_B5YCA4 Ggdef domain/hd domain protein n=2 Tax=Dictyoglomus RepID=B5YCA4_DICT6 Length = 770 Score = 64.9 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 10/165 (6%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL--- 57 + K + ++L F+ T + L +L I Y +D+ L + Sbjct: 416 LEKEKEVSELIDLFSEKTEKVTPLGSILKRVLNILDADAGSIMG---YDEDDNVLRIVAS 472 Query: 58 -GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA--SNSEIVLPLVV 114 G Q + + +G G+ G + +EDV+ + + S I PL+ Sbjct: 473 FGLPQEVVENTVLRMGEGIAGWVAQHREPLILEDVYKDKRFVIIEPRFNIKSSICYPLIY 532 Query: 115 KNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 N+++GVL+I+S F +F D + ++ + + +L + ++ Sbjct: 533 NNKLVGVLNINSLKDFKKFDKNDLAMVEKIASVIAYLLYKEELEQ 577 >UniRef50_A8QBJ3 Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8QBJ3_MALGO Length = 97 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 32/91 (35%) Query: 95 DGHIACDAASNSEIVLPLVV-------------------------------KNQII-GVL 122 GHIACD+ S SEIV+P+VV + +I GVL Sbjct: 4 AGHIACDSVSQSEIVVPIVVPRTRLSSMHQAAIRGEGPEPYVRAWAGRGTENDHVIVGVL 63 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 DID F ED + L+ +V ++ + Sbjct: 64 DIDCESPNGFDTEDARALQNIVHRITEACDW 94 >UniRef50_Q7UNP2 Probable sensor kinase n=2 Tax=Planctomycetaceae RepID=Q7UNP2_RHOBA Length = 614 Score = 64.1 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 37/86 (43%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P G+ G A DV I A + S + +PLV+ +Q++G ++++S Sbjct: 275 PRENGITGYVAASGVSYVCHDVQNDPLFIPGVADARSSLTVPLVLHDQVLGTINVESPDV 334 Query: 130 GRFTDEDEQGLRQLVAQLEKVLATTD 155 F+D D Q L + L T + Sbjct: 335 AAFSDSDLQFLEIFARDIAFALNTLE 360 >UniRef50_A9B569 Metal dependent phosphohydrolase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B569_HERA2 Length = 571 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 24/134 (17%) Query: 51 EDDTLVLGPFQGKIAC----VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---- 102 E L+L G + VR+ GRG+ G + + DV H Sbjct: 224 ESGDLILQHSTGHLHERVQSVRLAKGRGIAGYVAETGETICVGDVKRDQRHDGSVDQMTG 283 Query: 103 -ASNSEIVLPLV------------VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 + S + +PL + +IG +++ + GRF D+D+ L+ L Q Sbjct: 284 FETRSILAVPLRTRCITFGRERAQSEEHLIGCIEVLNKRDGRFDDDDKLLLQTLARQAAT 343 Query: 150 VLATTDYKKFFASV 163 VL D +A V Sbjct: 344 VLEIAD---LYADV 354 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 13/150 (8%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP---FQGKIACVRIPVGRGVCGTA 79 A L + E L YL++ + L ++ +R+ G+GV GT Sbjct: 81 ELDALLVTVVDSIVEHLDAERGT-LYLVDGRSRTLTSVVAHLPELERIRLDFGQGVAGTV 139 Query: 80 VARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVK-NQIIGVLDIDSTVFGRFT 133 A+ Q+ + D A ++ S + LP+ ++IGVL + + G+FT Sbjct: 140 AAQGQIIAVSDPGADPRFDASIDRQTGFSTRSMLALPIRDSAGEVIGVLQLLNAGRGQFT 199 Query: 134 DEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 D+ L +VL T +A + Sbjct: 200 LADQAKATTLATSAGQVLQATS---LYADL 226 >UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geobacter RepID=C6E9C6_GEOSM Length = 713 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 57/158 (36%), Gaps = 20/158 (12%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K E Y + L+ S +L ++ F LG Sbjct: 360 SKDELYQAILEIAAELIDA--------TQGSVMLIDKDGQNMHIVF--------TLGMTL 403 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSEIVLPLVVKNQI 118 C+ + VG+G+ G Q I DV + S S I +PL +K++I Sbjct: 404 NVARCLPVKVGKGIAGMVAQSGQPLLINDVEKDSRVAMANRLRFKSKSLICMPLKLKDKI 463 Query: 119 IGVLDI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 IGVL++ D FTD D Q L ++ T+ Sbjct: 464 IGVLNLSDKKNLAPFTDADLQVLTSFANLASLMIERTE 501 >UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1A0_HERA2 Length = 677 Score = 63.3 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIV 109 + L + K+A VR+P G+G+ G A+ Q + D + + S + Sbjct: 220 MTLEAGEEKLAGVRVPPGQGLVGAAITTRQPVVVLDAQNDPRFYRRVSEDVGFVTRSVLC 279 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +P++VKN+ IGV+ + + + G F ED Q L+ + + + D F V+ Sbjct: 280 VPMLVKNREIGVIQLLNKLEGVFNTEDTQRLQAMANTVGVAI---DNANLFHEVS 331 >UniRef50_Q0BUK2 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BUK2_GRABC Length = 800 Score = 63.3 bits (153), Expect = 3e-09, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 53/139 (38%), Gaps = 12/139 (8%) Query: 26 ATLANTSALLYERLTDINWAGFYLLEDDT-LVL----GPFQGKIACVRIPVGRGVCGTAV 80 A LA L+ L Y L L L G + + R+ +G G+ G Sbjct: 62 APLAELVRLVASELVSEV-CSIYALRPGEILELVATEGLYPDAVGRTRLRLGEGIVGIVA 120 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEI-----VLPLVVKNQIIGVLDIDSTVFGRFTDE 135 A + + D A + E+ +P+ +++GVL + + R+T++ Sbjct: 121 ASGHLLNLPDAQNHPAF-AYRPETGEELYASLLAVPVRRGGRVLGVLAVQNRAVRRYTED 179 Query: 136 DEQGLRQLVAQLEKVLATT 154 + + L + L ++ A T Sbjct: 180 EVEVLETVAMVLAELFAAT 198 >UniRef50_UPI00016C4C54 probable sensor kinase n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C54 Length = 581 Score = 62.9 bits (152), Expect = 3e-09, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 35/86 (40%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 GV G A D +IA A + S + +PL ++++IG L+++S Sbjct: 279 RTDNGVTGFVAATGVSYLCRDTAHDPHYIAGAAGARSSMTIPLKFQDEVIGTLNVESPRA 338 Query: 130 GRFTDEDEQGLRQLVAQLEKVLATTD 155 F +D Q ++ L T D Sbjct: 339 DGFGPDDLQFTELFSKEVAAALHTLD 364 >UniRef50_B9L460 Ggdef domain protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L460_THERP Length = 756 Score = 62.9 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 35/146 (23%), Positives = 56/146 (38%), Gaps = 7/146 (4%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGP---FQGKI 64 +L D +++ + + + + L G L D T +G +G + Sbjct: 432 ELLHDLTRMVSEDRNLDSAFEMVADRLQREFGYAL-VGLALLSADGTRFVGRAVRVEGGL 490 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI--ACDAASNSEIVLPLVVKNQIIGVL 122 RGV G AV N+ Q + DV + D SE+V L + + IGVL Sbjct: 491 TFNEWRADRGVTGRAVRENRAQLVVDVRQDPDYFDPQPDLPMESEVVAVLRREGKPIGVL 550 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLE 148 +I+S R ED + + LE Sbjct: 551 NIESRRGHRLDQEDLRLALNVAVHLE 576 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 62.5 bits (151), Expect = 4e-09, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 11/157 (7%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---GPFQGKI 64 + + F L+ E A L + L +LL+ L ++ Sbjct: 28 SQVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGT-LWLLDPARRELFSRAAHLPEV 86 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVV-KNQI 118 + +R+ +G+GV GT + D A + S + +PL + Sbjct: 87 SQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRFFADIDRMTGYRTTSLLAVPLRDGDGAL 146 Query: 119 IGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATT 154 GVL + + RFTDED Q L + +Q+ L +T Sbjct: 147 YGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQST 183 >UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IM31_ACIBL Length = 612 Score = 62.5 bits (151), Expect = 5e-09, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 46/105 (43%), Gaps = 19/105 (18%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD----------GHIACDAASNSEIVLPL 112 + +R+P GRGV G +V + D + G+ + S + LP+ Sbjct: 236 EHQELRVPFGRGVAGRVAETGEVINVADAYTLPFFDRSFDQKTGY-----TTKSLLCLPI 290 Query: 113 V-VKNQIIGVLDI--DSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 N+I+GVL + ST GRFT ED++ L +L + L Sbjct: 291 RHHNNEIVGVLQLLNQSTH-GRFTPEDQEFLTKLTGHMAMALENA 334 >UniRef50_C7QGD6 Sensor protein n=5 Tax=Actinomycetales RepID=C7QGD6_CATAD Length = 1588 Score = 62.2 bits (150), Expect = 7e-09, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 27/155 (17%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWA---GFYLLEDD------TLVLGPFQ 61 + LM G LA + L+ + LT + A F+L ED L L Sbjct: 730 LARISGLMQGRRD----LAVVAELVMDELTPLVGAQYGAFFLAEDAADGSGIELRLISSY 785 Query: 62 GKIA---CVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDA-----ASNSEIVLPL 112 G R +G+ + G A +V I+DV G ++A + A+ S +VLP+ Sbjct: 786 GDPGDDRPTRFRLGQSLVGQAARSKRVIAIDDV---PGDYVALGSGLGRTAAASLVVLPI 842 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 V++Q++GV+++ S RFT L QL+ + Sbjct: 843 AVEDQVLGVIELASMH--RFTPVHRAFLEQLMETV 875 >UniRef50_A7HTY0 PTSINtr with GAF domain, PtsP n=5 Tax=Alphaproteobacteria RepID=A7HTY0_PARL1 Length = 755 Score = 61.8 bits (149), Expect = 8e-09, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 61/156 (39%), Gaps = 12/156 (7%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED-DTLVLGPFQG----KI 64 L R +MA S L L+ + YL+ L L +G + Sbjct: 11 LLRRLREVMAEPESAQKRLDKIVVLIASNMVAEV-CSAYLMNGARELELSATEGLKPTAV 69 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV-----LPLVVKNQII 119 R+ VG G+ G A + + D G A + EI +P++ +++ Sbjct: 70 HATRLKVGEGLVGDIAAHARPLNLADAQSHPGF-AYRPETGEEIYKSLMGVPILRSGKVV 128 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 GVL + + +T+E+ + L+ + L +V+A D Sbjct: 129 GVLVVQNRTKRHYTEEEVEALQTVAMVLAEVVAAAD 164 >UniRef50_B3E4M8 Putative GAF sensor protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E4M8_GEOLS Length = 182 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 13/132 (9%) Query: 32 SALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV 91 S LL + F ++ L PF R+P G+G+ G + ++DV Sbjct: 51 SLLLLDEF--TGHLDFEVVTGGREELLPF------FRVPKGQGIAGWVAQNDLPIIVQDV 102 Query: 92 HVFDGHIACDA-----ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 + + I +PL V +IGVL + G F +D + Q Sbjct: 103 QSDERFFKFTDQELGFTTRDMIAVPLRVNGTVIGVLQAINKNSGSFNHDDLKLAMAFANQ 162 Query: 147 LEKVLATTDYKK 158 + ++ TD ++ Sbjct: 163 IASIINKTDKEQ 174 >UniRef50_B5YIS1 Hamp domain/gaf domain/hd domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIS1_THEYD Length = 361 Score = 61.4 bits (148), Expect = 1e-08, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 8/112 (7%) Query: 57 LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDAAS----NSEIVLP 111 LG K+ +++ G+G+ G + I DV + D S + I LP Sbjct: 64 LGEKAEKVKMIKLKKGQGIAGWVAKHKEAVIINDVQKDPRFYKGADEKSGFKTKTMICLP 123 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +++K++++GV+ + F + D + LR L +Q+ + + + + + Sbjct: 124 VMIKDKVLGVIQAINKKNSLFNEYDLELLRALASQVAVAI---ENARLYEEL 172 >UniRef50_B1ZLF4 Signal transduction histidine kinase n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZLF4_METPB Length = 829 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 21/157 (13%) Query: 4 TEFYADLNRDF-----NALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL--- 55 E A L R+ AL A A L + L++ DTL Sbjct: 178 KERRAYLAREALRDTQAALTALGDDLDAVLRTIIDGAMRAVPAAEGGAVQLIDGDTLEFR 237 Query: 56 ----VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS----NSE 107 L P+QG +RI + + G QR+ D ++ D + S Sbjct: 238 TVRGTLVPYQG----LRIGMQGTLAGHCATTRMPQRMADAFTAP-YVNRDLIAPLNLRSA 292 Query: 108 IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV 144 + +PL+ + ++GVL + S F+ D + LR Sbjct: 293 VTVPLLRGDTLLGVLQLQSGKPEAFSAYDLELLRLFA 329 >UniRef50_B0S995 Serine phosphatase RsbU, regulator of sigma subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S995_LEPBA Length = 606 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 2/102 (1%) Query: 49 LLEDDTLVLGPFQGKIACVR--IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS 106 L + + LV F + R + G G GT + + D+ + + S Sbjct: 70 LWDGEFLVPVKFVKETEPPRRNLKAGEGYSGTVFETKEPILVNDLSRSAHYFDEGEKTKS 129 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 + +P++ K +I+G L ++S + +D + L L +QL Sbjct: 130 VMCVPIMQKEEILGTLAVESERENFYIIDDLEILEALTSQLA 171 >UniRef50_D1C2G1 Signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2G1_SPHTD Length = 652 Score = 61.0 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 14/151 (9%) Query: 23 SFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGPFQG----KIACVRIPVGRGVCG 77 A L ++ + + + + F Y TLVL G ++ +R+P+G G+ G Sbjct: 131 DLEAMLQTVVNVVKQTVAADSCSIFLYDQTSGTLVLRATVGLNQEEVGQLRLPLGVGITG 190 Query: 78 TAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVK--NQIIGVLDIDSTVFGR 131 A A ++ + + ++ D S++ +PL + ++++GVL+I S Sbjct: 191 EAAATRRILAVAEARSHPAYLDHPRIGDQIYTSQVSVPLALGAPDRLVGVLNILSAARRE 250 Query: 132 FTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 F ++ L ++ + + + ++ Sbjct: 251 FDADELAFLETAAGEIAIAI---ENARLYSE 278 >UniRef50_A9AXC8 Diguanylate cyclase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXC8_HERA2 Length = 717 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 6/100 (6%) Query: 51 EDDTLVLGPFQGKIACVR------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 E + + QG A VR P+ RG+ G Q D+ ++ + Sbjct: 246 EQQRMFIRAIQGYPAEVRRFQFEGWPIDRGIAGLVARTGQPDWTADIRNSSYYVNSRPTT 305 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV 144 S++ +P+V +++GV+ ++S G F D+ + + Q+ Sbjct: 306 LSQMTVPIVHSGKVLGVMILESDRVGTFNDDTTRFVSQIA 345 >UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LX99_HALO1 Length = 547 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 26/174 (14%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +++ E +L D A++A E L + E L + A +L++ T L Sbjct: 13 VSEGELKQELLSDLGAMIAREVELDELLKTFGLRVAEAL-GADRATLWLVDARTGELRSR 71 Query: 61 QG---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVF----------DGHIACDAASNSE 107 ++ +R+P+GRGV G R +V I D G+ + S Sbjct: 72 VANLLELDELRMPIGRGVAGYVAQRAEVVNIRDAASDQRWAPEIDQRTGY-----RTRSM 126 Query: 108 IVLPLVVKN-------QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + +P+V ++ GV+ + + G FT DE+ LR+L Q+ + LA T Sbjct: 127 LCVPVVEPGDRGAAPDRLRGVVQVLNKDEGAFTQADERFLRELAQQITRALAYT 180 >UniRef50_B3E3E2 Metal dependent phosphohydrolase n=2 Tax=Geobacter RepID=B3E3E2_GEOLS Length = 373 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 7/103 (6%) Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD------AASNSEIVLP 111 G + VR+ G G+ G + ++DV A D + + IV P Sbjct: 71 GEKGRHLKEVRLKPGEGIAGWVARKGGAVIVDDVKHDPRF-ASDIDRFTGYDTRNMIVAP 129 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + K ++ GVL + + V G F D + ++ L Q+ + Sbjct: 130 VATKEKVWGVLQVLNKVTGDFNAHDLELVQALADQVAIAIENA 172 >UniRef50_D0E8I3 Sensor protein n=1 Tax=uncultured bacterium HF130_AEPn_1 RepID=D0E8I3_9BACT Length = 466 Score = 60.6 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 14/103 (13%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS-------NSEIVLPLVVKNQIIG 120 +IP+G G+ G + + D+ S + +PL VK +++G Sbjct: 96 KIPIGEGISGKVFESKEPILVADLSKDPK----FNERELEKFYHRSFMSVPLKVKGKLLG 151 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 VL++ S V F +ED Q Q + + F + Sbjct: 152 VLNVHSKVPNVFNEEDLQIFSTFAVQTATAIVN---NRLFFEL 191 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 11/148 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 + + + + E L N +L L + F LL DTL + +G + Sbjct: 12 SVIQKISVAIIHERDVEKLLENVLGILESELGMLRGT-FALLFGDTLKIEASRGLDETEK 70 Query: 69 ----IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE-----IVLPLVVKNQII 119 +G G+ G R I D+ + + + E I +PL+ Q+I Sbjct: 71 QRGFYRMGEGITGHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQVAFICVPLIHDGQVI 130 Query: 120 GVLDIDSTVFGRFT-DEDEQGLRQLVAQ 146 G L ID V G D D L + Sbjct: 131 GTLSIDRPVDGSTDLDRDVALLEIIANI 158 >UniRef50_B9KXS9 Probable two component sensor kinase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KXS9_THERP Length = 568 Score = 60.2 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 13/144 (9%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQG----KIACVRIPVGRGVC 76 L+ + +L E + ++ G +L ++ TL L G + +P+G G+ Sbjct: 46 DLDEMLSTVTRVLRETM-RVDSCGVFLYDESSGTLTLRAVDGVAPDRPGGFTLPLGVGIT 104 Query: 77 GTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVK--NQIIGVLDIDSTVFG 130 G A ++Q D ++ D S++ +PL+ + +++GVL++ + Sbjct: 105 GQAALTRRLQIAFDAPRHPAYVDYPHVDDRPFASQVSVPLIARQPGRLLGVLNVLTLEPR 164 Query: 131 RFTDEDEQGLRQLVAQLEKVLATT 154 F E+ L ++ + Sbjct: 165 EFWPEEIDFLETAAGEIAIAIENA 188 >UniRef50_C0QF51 Pdp n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QF51_DESAH Length = 757 Score = 59.8 bits (144), Expect = 3e-08, Method: Composition-based stats. Identities = 33/166 (19%), Positives = 60/166 (36%), Gaps = 14/166 (8%) Query: 2 NKTEFYADLN---RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLV 56 NK + DL + L+ + + L ++ L+ + YL + L Sbjct: 3 NKDAAHLDLLFNISELANLVTASSDLESFLTHSVDLVARHFSAPV-CSIYLYNETSGHLT 61 Query: 57 LGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEI 108 L +G + + + G G+ G + + R G A + NS + Sbjct: 62 LKATKGLKSDAVNKIHMEPGEGLVGRSFETLSIIREGHASKTPGFKYFPEAGEDLFNSFL 121 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +P+ + IGVL + F DE+ +R +VAQL + Sbjct: 122 CVPIKRGVEKIGVLAVQHQELNYFDISDERAIRAVVAQLSGAIENA 167 >UniRef50_Q2SHY3 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHY3_HAHCH Length = 658 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 53/159 (33%), Gaps = 8/159 (5%) Query: 1 MNKT-EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 + K E + L E A + + + A L+E D +V Sbjct: 159 LEKATEKLNQIVETQFHLSQAEIDMAAFMQLVTDKMLTLTPAT-GAVIELMEGDEMVYQA 217 Query: 60 FQGKIA---CVRIPVGRGVCGTAVARNQVQRIEDVHVFD--GHIACDAASNSEIVL-PLV 113 G +R+ + + G V + ED AC + +V+ PL Sbjct: 218 ASGSAHQYKGLRLNLFSSLSGLCVIDRKALISEDTANDPRVNPEACKKVGAASMVVTPLY 277 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 + +IGVL I S F DED + L + + + Sbjct: 278 EEGNVIGVLKIISDTPHAFDDEDLKTLEMMAGLIGSAIG 316 >UniRef50_A9B4G5 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4G5_HERA2 Length = 702 Score = 58.7 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 14/151 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLT------DINWAGFYLLED--DTLVLGPFQG 62 R+ AL+A T + + + S +L + + +LL D D +L G Sbjct: 140 ERERFALIADITRDITQIESISGMLAHVVDVSTKALQADHGNLFLLHDVADVEILTTDDG 199 Query: 63 ---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD---AASNSEIVLPLVVKN 116 + V+ V G G A+ + RI DVH + D A+ S +++P+ + Sbjct: 200 VSHNLDRVKRVVKEGAAGYALRSRETVRITDVHEDVRWLQLDQSAASVRSALIVPIGDAS 259 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 +GVL + +V F+ +D+ L + Q+ Sbjct: 260 GPLGVLAVYHSVVDHFSADDQALLELIAHQI 290 >UniRef50_A5FX95 PTSINtr with GAF domain, PtsP n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FX95_ACICJ Length = 755 Score = 58.7 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 54/138 (39%), Gaps = 12/138 (8%) Query: 26 ATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPFQG----KIACVRIPVGRGVCGTAV 80 ++LA L+ L + Y+ L L G + R+ VG G+ G A Sbjct: 37 SSLAELVELIAAEL-AVEVCSVYVARAGEMLELAATHGLRIAAVGHTRVRVGEGIIGLAA 95 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSE-----IVLPLVVKNQIIGVLDIDSTVFGRFTDE 135 A+ + + D A + E + +P+ + +GV+ + ++ +T Sbjct: 96 AKGEALNLPDAQNHPEF-AYRPETGEERYASMLAVPIRRAGRTLGVIAVQNSEPRVYTPL 154 Query: 136 DEQGLRQLVAQLEKVLAT 153 + + + + + ++LA+ Sbjct: 155 EVETISTIAMLIGEILAS 172 >UniRef50_A9B3V8 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3V8_HERA2 Length = 958 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 6/96 (6%) Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPLVVKNQIIGVLDIDST 127 + G+ G + + RI DV V + + S + +PL+ ++Q++GV+ + Sbjct: 374 LQAGLSGWVFRQREAARIADVRVDKRWVELPSTRGRVRSALAVPLLREDQVLGVMTLTHP 433 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 F+ D + +R + AQ + + FA + Sbjct: 434 RIDHFSAADLELVRSVSAQAAVAIENAN---LFAEL 466 >UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9WFK4_CHLAA Length = 545 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 16/158 (10%) Query: 11 NRDFNALMAGETSFLATLANTSALLYE---RLTDINWA---GFYLLEDD--TLVLGPFQG 62 R+ + L S L + ++LL + R + A ++L+++ LVL G Sbjct: 163 LRELHLLYEIGQSLAVNL-DLASLLNDIKLRAPKVVGAERCSIFILDEETNELVL-EIPG 220 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH---IA--CDAASNSEIVLPLVVKNQ 117 + R+P RG+ G V Q + DV I+ D + S + +P+ VK++ Sbjct: 221 EQRQYRMPADRGIAGWVVTHGVGQIVNDVEHDPRWYDAISREADFVTRSIVCVPMRVKDR 280 Query: 118 IIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATT 154 +IG + + + G FTD+D Q L L AQ + Sbjct: 281 VIGAMQLLNKANGQPFTDQDMQLLTTLAAQAAIAIENA 318 >UniRef50_Q04VG8 Response regulator with GGDEF domain n=4 Tax=Leptospira RepID=Q04VG8_LEPBJ Length = 336 Score = 58.3 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 61/170 (35%), Gaps = 31/170 (18%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWA---------GFYLLEDDTL 55 + Y+ + + + + + A + + NW+ + L + L Sbjct: 21 KLYSSIGKIITSSLEQQEVLDAVMEEVRLF----FSPENWSLMRYDENSGELFFLIAEGL 76 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAASNSE----IVL 110 L +I +R+ G G+ G+ V +E+V D + E I + Sbjct: 77 ELN----RIKNIRLKSGEGIAGSVVQTKLPIFVENVRNDPRFSKRVDEKTGFETKTIIAV 132 Query: 111 PLVVKNQIIGVLDIDSTVFGRFT-----DEDEQGLRQLVAQLEKVLATTD 155 P++ + Q+ GV+++ RF ED L+ + LA ++ Sbjct: 133 PMIFRGQVYGVIEL----VNRFDGSSFTPEDLVILQTIADFTAISLAHSN 178 >UniRef50_Q3IED6 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas haloplanktis TAC125 RepID=Q3IED6_PSEHT Length = 219 Score = 58.3 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 16/155 (10%) Query: 13 DFNALMAGETSFLATLANTSALLY--ERLTDINWAGFYLLED----DTLVLGPFQGKIAC 66 A + LAN A++ ++ T ++W G Y D L+ + G + Sbjct: 64 KLTAYVTNNEQTHTKLANLQAIVNYIQQQTGVDWYGIYQTHDTAQGKQLLKLAYHGAPSR 123 Query: 67 VRIPVGRGVCG-----TAVARNQVQRIEDVHVFDG----HIACDAASNSEIVLPLVVK-N 116 P+ + I +V + + CD SE+ LPL + Sbjct: 124 PLFPLTADFAAGSNNVQVALSKTGRIINNVEQYLSQGGEYYTCDPKVKSEVCLPLFNRSG 183 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + +G++D ++ F ++ L ++ + L Sbjct: 184 ECVGIIDAEAFHNDFFDEKVLAVLIACCIKIPQFL 218 >UniRef50_C6MUF5 Diguanylate cyclase with GAF sensor n=1 Tax=Geobacter sp. M18 RepID=C6MUF5_9DELT Length = 739 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 4/94 (4%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSEIVLPLVVKNQIIGVL 122 C+ + VG+G+ G Q I DV + S S I LPL +K +IIGV+ Sbjct: 437 CLPVKVGKGIAGMVAQSGQPLLINDVEKDSRVAMTNRTRFKSKSLICLPLKLKYKIIGVI 496 Query: 123 DI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 ++ D FT+ D + L + T+ Sbjct: 497 NLSDKKNLTPFTEADLRVLTSFANLASLTIERTE 530 >UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1_CHLAD Length = 2783 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 9/101 (8%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHV-----FDGHIACDAASNSEIVLPLVVKNQIIGV 121 +R+P+G+G G Q IEDV+ + + + S + +P++ + QIIGV Sbjct: 1601 MRVPIGQGFTGRVAETGQPLIIEDVNEEGGSLYPNYQQRNNLI-SFMGVPVIYREQIIGV 1659 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 L + + RFT+++ L L Q L + + F Sbjct: 1660 LSVMTNYRRRFTNDEMVLLSGLANQAATAL---ENARLFEE 1697 Score = 51.4 bits (122), Expect = 9e-06, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 38/113 (33%), Gaps = 6/113 (5%) Query: 58 GPFQGKIACVRIPVG---RGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLP 111 G Q + A V + G+ G + + I DV + + S +P Sbjct: 2291 GRGQVQAANVPLRFANNTEGLAGWIMQHQEPVNIRDVTHDPRWVQESGRADTVRSVAGVP 2350 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 L + IGV+ + S F+D L + + + + F +A Sbjct: 2351 LQTGDTAIGVIILSSPQPNYFSDSQMNLLGTIASVIAAAVYNAQLYGFVNDLA 2403 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-----HIACDAAS--NSEIVLPLVVKNQI 118 R+ +G+ + + RI+D+ + + D S I +PL+ + + Sbjct: 1080 HKRVTPKQGLTAKIIDEGKPLRIDDLLQANDLRNQLFLLVDEGRQVRSWIGVPLISQGAV 1139 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 IGVL + S F++ + L L QL L + + FA Sbjct: 1140 IGVLSLQSETAAAFSERTLRFLAALANQLAIAL---ENARLFAD 1180 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 65/162 (40%), Gaps = 15/162 (9%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 E +++ A ++ + + +T+A + L+ I Y T+ + FQ + Sbjct: 454 ERLQEISESLAADLSLDETLESTIAGVAKLVRFSGARIT---LYDERYQTMRI-AFQHGL 509 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----AC------DAASNSEIVLPLV 113 C G + + RI ++ + AC D + S + +PL Sbjct: 510 RCQVGEEGDFLSSWIARHQRPLRIGNLSQPPVWLGALDNACILILVNDMPAQSYLGMPLR 569 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 N ++G L++ ST G F+ EDE+ L + Q + +A + Sbjct: 570 SGNTLLGALELVSTQAGAFSAEDERLLSIIAGQSARAIANAN 611 Score = 49.4 bits (117), Expect = 4e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHV--------FDGHIACDAASN-SEIVLPLVVKNQIIG 120 P+G G G + + + +G I +A S +V+P++ NQ++G Sbjct: 1771 PLGYGTNGWVIRNRRPLLLGTASAARAMGLLIDEGRIGDTSAIEESYLVVPIIYGNQVLG 1830 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 V++I S F + D LR ++ + + + FA Sbjct: 1831 VINIQSYTQHAFDEND---LRFVMTVTNQAAVALNNARLFAE 1869 >UniRef50_B5YEI3 Metal dependent phosphohydrolase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEI3_DICT6 Length = 318 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 6/107 (5%) Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDA----ASNSEI 108 + LG KI + VG G+ G DV + D+ + S + Sbjct: 13 EIALGEKGEKIKRYSLKVGEGIAGKVAETGIPIIENDVENNPFFTSKFDSLTSFKTKSLL 72 Query: 109 VLPLVVKNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATT 154 +PLV +++IIGV+++ + +F+ D + L+ + Q + Sbjct: 73 CVPLVYQDEIIGVIEVINKKGKSKFSKNDLKLLQAIANQASIAIKNA 119 >UniRef50_A9AWZ3 Adenylate/guanylate cyclase with GAF sensor(S) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWZ3_HERA2 Length = 1020 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 6/91 (6%) Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHIACD---AASNSEIVLPLVVKNQIIGVLDIDSTVF 129 GV G + + I D I+ D + S + +PL+ + ++GV+ T Sbjct: 208 DGVAGWVMRAMKPLIIADTTRDPRWISLDRRTETTRSILSVPLIHQGIVVGVVTAAHTRT 267 Query: 130 GRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 FT E + + + Q + ++ + F Sbjct: 268 NYFTQEHLELAQNIGNQ---SVTAFNHAQLF 295 >UniRef50_C8WEG8 PTSINtr with GAF domain, PtsP n=11 Tax=Sphingomonadales RepID=C8WEG8_ZYMMN Length = 762 Score = 57.9 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL----GPFQGK 63 ++ + +MA ++ + L ++ L + YLL D L L G Q Sbjct: 13 REILTRLHDVMASRSNAQSKLDQVVQIISTAL-LSDVCSIYLLRDGVLELFATYGLKQEA 71 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV-----LPLVVKNQI 118 + R+ +G+G+ GT + + + + + + E +P+V + Q Sbjct: 72 VHVTRLSLGQGLVGTIARDMAILNLSEATSHPDFVH-NPETGEEFFHSFAGVPIVRREQA 130 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +GVL + S RF D + + L+ + L +++ Sbjct: 131 VGVLAVQSAESRRFADIEVEALQTVAMVLAELI 163 >UniRef50_Q67MH3 Conserved domain protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67MH3_SYMTH Length = 491 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 3/98 (3%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDG--HIACDA-ASNSEIVLPLVVKNQIIGVLD 123 I VG G+ G Q D H+ S +V+PL+ ++ GVL Sbjct: 247 TTIEVGVGLSGWVAKHGQSILTNDAARDPRAAHVPGTPHEDESILVVPLIADGRLYGVLR 306 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +D ++T D L + A + ++ ++ A Sbjct: 307 VDRPGVDQYTIGDLHLLELMAAHVSDAISRAQLEERLA 344 >UniRef50_Q1K190 PTSINtr with GAF domain, PtsP n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K190_DESAC Length = 770 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 13/155 (8%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG----KI 64 D +AL+ TL N +L+ R+ YLL++D TL L QG I Sbjct: 17 LEDISALILQSHDLNETLNNIVSLVARRMHSEV-CSIYLLDEDGETLWLRATQGLTQEAI 75 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE-----IVLPLVVKNQII 119 V + +G G+ A+ + I + ++ + E + +PL+ + I Sbjct: 76 GKVSMKLGEGLASMAIEQGHPISILEPEEHPRYLY-FQETGEEQFHCFLAVPLMDRRNPI 134 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 GV+ + ST F+ + + + Q+ V+ Sbjct: 135 GVITLQSTEKRAFSPTEISTMTTIAFQVSTVVTNA 169 >UniRef50_A0LL31 Serine phosphatase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL31_SYNFM Length = 438 Score = 57.5 bits (138), Expect = 1e-07, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 64/173 (36%), Gaps = 28/173 (16%) Query: 5 EFYADLNRDFN------ALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLV 56 E Y + + AL+ L N + + L+++ D LV Sbjct: 17 ERYRERIDNLRECFRTSALINSTLELDEVLENIMTT-SRSILKADACSLMLVDEATDELV 75 Query: 57 ----LGPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDAA----SNS 106 GP GK+ A R+ G G+ G + IEDV+ H D ++S Sbjct: 76 FAVAQGPVAGKLKAGFRLRKGDGIAGHVFQTGKPLLIEDVYRDARFHQEFDRKTGYRTHS 135 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGR-----FTDEDEQGLRQLVAQLEKVLATT 154 + +PL +K+++IGV S V R F EDE+ L L + Sbjct: 136 MLCVPLKIKDRVIGV----SQVINRLDGTSFVAEDEETLGLLCDHAAIAIENA 184 >UniRef50_B0R429 Putative uncharacterized protein n=2 Tax=Halobacterium salinarum RepID=B0R429_HALS3 Length = 239 Score = 57.5 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 14/140 (10%) Query: 22 TSFLATLANTSALLYERLTDINWAGFYLLEDDT-----LVLGPFQGKIACVRIPV----- 71 T+ LA LA T L E L ++W G Y D+ LV + G + +P+ Sbjct: 91 TARLAALAGTVDALAEELP-VDWLGIYRRAADSDGHPILVKEAYTGAPSRAVVPLTDSVA 149 Query: 72 GRGVCGTAVARNQVQRIEDV--HVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 R + + ++D H G+ D+A SE P++ + ++G++D +S Sbjct: 150 ARSINAAVGRSGEAVVVDDTAAHDGPGN-ERDSAVASECCCPVLAGDDVVGIVDAESHTP 208 Query: 130 GRFTDEDEQGLRQLVAQLEK 149 FT E + A L Sbjct: 209 EFFTPERVLTIVGACAGLAD 228 >UniRef50_Q1PXD5 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXD5_9BACT Length = 483 Score = 57.5 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 11/125 (8%) Query: 30 NTSALLYERLTDINWAGFYLLEDDTLVLGPFQ------GKIACVRIPVGRGVCGTAVARN 83 NT +L E L ++ F L++D+ L ++ G+ + +G G+ G Sbjct: 56 NTINVLKESLRIEDFC-FMLIDDECNELKMWKVDDCSFGEAKGITFKIGEGISGLVAQTG 114 Query: 84 QVQRIEDVHVFDG---HIACDAASNSEIVLPL-VVKNQIIGVLDIDSTVFGRFTDEDEQG 139 + I D + S I +PL + +++IGVL+I F D D+ Sbjct: 115 ESILIPDTDKDPRFLFYKGKIPDIGSFISIPLKLNNDKVIGVLNIHKKEKNAFRDTDKML 174 Query: 140 LRQLV 144 + Sbjct: 175 FVAIA 179 >UniRef50_A7NI58 Sensor protein n=3 Tax=Bacteria RepID=A7NI58_ROSCS Length = 718 Score = 57.5 bits (138), Expect = 2e-07, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 12/105 (11%) Query: 51 EDDTLVLGPFQGK-----------IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA 99 E LVL ++G A R GV G + + DV + A Sbjct: 232 ERGELVLHAYEGYGGDPLNRDAFGEARRRWSWEVGVAGKVARTGRATLLRDVSRDPDYRA 291 Query: 100 CDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLV 144 +E+ P+ + + VL +DS F + + + L Sbjct: 292 FAPEVRAELAAPI-GADPPLAVLLLDSPRSVAFGESEVAFVDALC 335 >UniRef50_Q72KR9 Sensory transduction histidine kinase n=1 Tax=Thermus thermophilus HB27 RepID=Q72KR9_THET2 Length = 686 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 56/165 (33%), Gaps = 21/165 (12%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF- 60 + E + AGE L ALL E + W G T + P Sbjct: 120 ERAERVLRRAGECATQAAGEGDL---LHKVCALLVEEGYALAWVG---EARPTGEVVPRE 173 Query: 61 ----QGKIACVRI-----PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-----S 106 G + +R+ P G+G G A+ + Q + V + + S Sbjct: 174 AAGAVGYLEGIRVRWDEAPEGQGPTGRALRSGRPQVLRSVEEDPRYAPWRERAQVFGFAS 233 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 PL V+ ++ G L++ + F +E+ + L L + L Sbjct: 234 SAAFPLRVEGRVWGSLNVYAPEEDAFDEEEVRLLEDLARLIGHAL 278 >UniRef50_A1ZR44 Serine/threonine kinase with GAF domain n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZR44_9SPHI Length = 1131 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 47 FYLL---EDDTLVLGPFQG---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC 100 Y+L ++D L L + G + I + G+ G A + + I D+ G+I+ Sbjct: 487 LYMLSEDKEDELSLLAYYGIDKEATQQTIKIDHGLAGQAFRQGKTIHISDIPKDYGYISS 546 Query: 101 ---DAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 AA N+ +++PL ++ + GVL+I S F F D + + L + +++ Sbjct: 547 ITGKAAPNNVLIVPLTIQETVEGVLEISS--FKVFEDFEVTFVEHLAEAIAITISSV 601 >UniRef50_B8G3P3 Sensor protein n=4 Tax=Chloroflexaceae RepID=B8G3P3_CHLAD Length = 726 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%) Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVL 110 L Q K+ R+P G G+ G V Q + D + +S + + Sbjct: 244 TLAGGQEKLIGQRVPPGVGIVGDVVRTQQYAIVHDPERDPRFYRNVSEGIGYNVHSILCV 303 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 P+VVK + IG +++ + GRFT+E+ L ++ A + + Sbjct: 304 PIVVKGRTIGAIELLNKRTGRFTEEEALRLTRMAATIGIAIENA 347 >UniRef50_Q1IKE0 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKE0_ACIBL Length = 362 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 50/143 (34%), Gaps = 12/143 (8%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLEDDTLVL------GPFQGKIACVRIPVGRGVC 76 + + L + E W +++++ L G + VR+ +G G+ Sbjct: 43 NLDSILQTIMEKMAEYFRPDTW-SLLMVDEEKSELYFAIAVGDAAEALKTVRLKLGEGIA 101 Query: 77 GTAVARNQVQRIEDVHVFDG---HIACDAA--SNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 G + + DV+ I + S I +PL K++++GV+ + + Sbjct: 102 GWVAQHGESLLVPDVYTDPRFAKRIDEMTKWQTRSIICIPLKSKHRVLGVIQLINVDMQG 161 Query: 132 FTDEDEQGLRQLVAQLEKVLATT 154 F + L+ L + Sbjct: 162 FGGNEMLLLQALADYAAIAIDNA 184 >UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subunit n=4 Tax=Leptospira RepID=Q051Q5_LEPBL Length = 936 Score = 57.2 bits (137), Expect = 2e-07, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 6/106 (5%) Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDAAS----NSEIVL 110 VLG + ++ +R+PVG+GV G V + I D + D AS + + Sbjct: 253 VLGEKRDEVTRIRVPVGKGVAGMVVRDKKPMIINDATNDPRVYREVDKASHFVTRNIMAA 312 Query: 111 PLVVKNQIIGVLD-IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 PL+V+ Q+IGV++ I++ FT+ED + + T+ Sbjct: 313 PLLVEGQVIGVIEAINTIDRTSFTEEDLELFSSFSGTSALAIQKTE 358 >UniRef50_A7NHH5 Sensor protein n=2 Tax=Roseiflexus RepID=A7NHH5_ROSCS Length = 2161 Score = 56.8 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 3/100 (3%) Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD---AASNSEIVLPLVV 114 G K + G G+ G + R + I DV + + S I PL+ Sbjct: 1669 GSVDSKRFTIMFERGAGLSGWVMQRQEAVCIADVRDDPRWLHEEGRAEEVRSVIAAPLMT 1728 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 ++ +GVL + S F + Q L + ++ V+ Sbjct: 1729 QDSPLGVLILTSPEVDFFNQDQLQLLATIANEVAIVINNA 1768 Score = 51.4 bits (122), Expect = 1e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 8/102 (7%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVKNQIIG 120 R G+ G + ++ IED + S + +PL+ +NQ IG Sbjct: 790 HKRTIPRSGLSGWVIDHGRMLHIEDYLEAQDRLPVTPVNLGEPIRSWVGIPLMRQNQTIG 849 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 VL + S F D Q L + QL L+ + FA Sbjct: 850 VLSVQSFEPHAFDARDVQWLSTVANQLAVALSN---AQLFAE 888 Score = 47.5 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 7/101 (6%) Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVF--DGHIACDAASN--SEIVLPLVVKNQIIGV 121 +R+P+GRG+ G A + + +V + + S + +P+ + Q IGV Sbjct: 1139 VLRVPIGRGLTGRVAASGRPLVVTNVEEDGTSLYPQFNREHQYTSFMGVPVAYREQTIGV 1198 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 L + + F+D++ L + Q L + + FA Sbjct: 1199 LSVMTVSQRSFSDDEVTLLAGIADQAAIAL---ENARLFAE 1236 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%) Query: 100 CDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 D S + P++ +++ GVL++ S GRF ++ ++ L + Q L+ Sbjct: 1351 DDPPICSWLGAPIIQGDEVFGVLNVQSYEPGRFDEDAQRFLMTVANQAAIALSNV 1405 Score = 40.2 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%) Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 PL++ +++IG+L++DS G + +ED Q + L +Q + + + FA V Sbjct: 1530 PLLLGDEVIGILNVDSATVGAYDEEDAQLVLALASQAAQAIRN---ARLFAEV 1579 >UniRef50_A1R1B6 ANTAR domain protein n=2 Tax=Arthrobacter RepID=A1R1B6_ARTAT Length = 240 Score = 56.8 bits (136), Expect = 3e-07, Method: Composition-based stats. Identities = 29/159 (18%), Positives = 48/159 (30%), Gaps = 26/159 (16%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC------ 66 L+ E + N S + E + AG +L+ QG+ Sbjct: 17 RILGLLLTEEKVDHAVQNLSQAIRESVPGTIGAGVSILDS--------QGRRTSRGFTDS 68 Query: 67 -------VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS-----NSEIVLPLVV 114 ++ +G G C TA A + + D+ AA S I PL Sbjct: 69 VVEQADFLQYELGEGPCLTAWATEETVLVHDLSDDSRWAQWSAAVSSLPIRSVISAPLTA 128 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 Q G + + S + E L + +L+ Sbjct: 129 GGQSFGTIKVYSPEPAAYDTETANLLELFASPAATLLSH 167 >UniRef50_Q3A855 Transcriptional regulator n=11 Tax=Desulfuromonadales RepID=Q3A855_PELCD Length = 940 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 18/108 (16%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 63 KIACVRIPVG-RGVCGTAVARNQVQRIEDVHVFDG----HIACDAASNSEIVLPLVVKNQ 117 ++ +P R + G + + D + SE+ +P++ ++ Sbjct: 429 RVGGTELPPEQRSLTGYVAHTGRSYMVADALEEIRTGGFYHEVTDIIKSELGVPVICDDE 488 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY-KKFFASVA 164 +I V+ +DS F+DE ++ L+ + + + ++ Y +K V+ Sbjct: 489 VIAVICMDSLRPYYFSDEHKRILQIISRMIARHISDLLYIEKLTGEVS 536 >UniRef50_C1F1G0 GGDEF domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1G0_ACIC5 Length = 365 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 50/148 (33%), Gaps = 19/148 (12%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 + ET L L T+ LY + +G + + VR+ Sbjct: 52 IMEQMRQFFEPETWSLLILDETTQELYYAV----------------AVGQSEAALRNVRV 95 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAAS--NSEIVLPLVVKNQIIGVLDIDS 126 P+G G+ G + + D+ A DA + S I +PL+ + + +GV+ + + Sbjct: 96 PLGEGMAGWVAQHGESLIVPDLEQDPRFAATSDARTPMRSAICMPLLSRQRTLGVIQLFN 155 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLATT 154 T+ L L + Sbjct: 156 CRLESMTEYTISFLHILCDYAAIAIENA 183 >UniRef50_Q2K0G3 Hypothetical conserved protein n=2 Tax=Alphaproteobacteria RepID=Q2K0G3_RHIEC Length = 450 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 19/109 (17%) Query: 68 RIPVGRGVCGTAVARNQVQRIED---VHVFDGHIACD----------------AASNSEI 108 + G+ G A Q ++ D V F I + AA+ S+I Sbjct: 212 EVAGSEGLIGAAATSGQTIKVSDMSRVRRFGEAIGLETEGSENLTRTVAFPQLAAAMSQI 271 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 +P+ + + GVL ++ST F +EDE L L +Q L ++++ Sbjct: 272 AVPMTARGTVTGVLFVESTARLAFREEDEAALEILASQAGGALRASEWE 320 >UniRef50_Q04QN3 Serine phosphatase RsbU, regulator of sigma subunit n=6 Tax=Leptospira RepID=Q04QN3_LEPBJ Length = 587 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH---IACDAASNSEIVLPLVVKNQIIG 120 I + +P G GV G + I+++ + + +NS I PL+ K++++G Sbjct: 243 IHTIIVPFGEGVAGWVAKERKNLLIQNLEEDKRYNLNVKYKFEANSLISSPLIYKDELLG 302 Query: 121 VLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTD 155 V+ +++ G F D + L + +L + D Sbjct: 303 VISVNNKKSGFAFHKNDLEMLGAIANRLSMTIKNAD 338 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 16/98 (16%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFD----------GHIACDAASNSEIVLPLVVKNQ 117 R+ +G G+ G + +ED + G+ + S + +PL ++N+ Sbjct: 77 RLDIGEGIAGWVAKEKKPIILEDAYSDSRFNPSWDQKTGY-----RTRSLVCVPLFIENK 131 Query: 118 IIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATT 154 IIG L+I + R F D L L + Sbjct: 132 IIGTLEILNKTQNRSFNACDLNYLTSLSEVAAIAIQNA 169 >UniRef50_A9WCV4 GAF domain protein n=6 Tax=Chloroflexi (class) RepID=A9WCV4_CHLAA Length = 667 Score = 56.4 bits (135), Expect = 4e-07, Method: Composition-based stats. Identities = 26/151 (17%), Positives = 52/151 (34%), Gaps = 20/151 (13%) Query: 23 SFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQG----KIACVRIPVGRGVC 76 +L + + + ++ YL + D LVL G I V +G GV Sbjct: 132 DLDTSLQTVVETVAQVM-NVEACSIYLYDKHRDDLVLRATHGLNRAAIGQVVARLGEGVT 190 Query: 77 GTAVARNQVQRIEDVHVFDGH----IACDAASNSEIVLPL---------VVKNQIIGVLD 123 G A + DV+ + + S + +P+ +++ GV++ Sbjct: 191 GWAAQLGYPVAVSDVYKDPRYHREPQLGEEMFRSMLAVPIVLFSAERFQFSADKLQGVIN 250 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + + FT E+ + +L +A Sbjct: 251 VQTIAPREFTQEEISFVETAAGELAFFIANA 281 >UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S) n=2 Tax=Roseiflexus RepID=A7NMZ1_ROSCS Length = 961 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Query: 74 GVCGTAVARNQVQRIEDVHVFDGHIACD----AASNSEIVLPLVVKNQIIGVLDIDSTVF 129 G V Q IEDV V HI + S I +PL+VK +++GVL+IDST Sbjct: 622 GAAVWVVHHKQPLLIEDVSV--SHIWAPKPQISNIQSWIGVPLLVKGEVLGVLNIDSTQK 679 Query: 130 GRFTDEDEQGLRQLVAQLEKVLA-TTDYKKFFAS 162 GRFT D + + A + + +A Sbjct: 680 GRFTQRDVE----VAQVFADNAAIAIENARLYAE 709 Score = 39.8 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 98 IACDAASNSEIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 I D + S + +PL+ + Q IGVL + + F D DE+ L + Q+ Sbjct: 481 IGTDRMALSWLGVPLIGREGQPIGVLTVQAYSPCAFDDRDERFLAAVARQVA---LHVQN 537 Query: 157 KKFFAS 162 FA+ Sbjct: 538 VMLFAA 543 >UniRef50_A3ZU96 Probable two-component response regulator n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZU96_9PLAN Length = 651 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 22/170 (12%) Query: 11 NRDFNALMAGETSF---------LATLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 + L+ S+ L +A +A L+ A +L + TLV P Sbjct: 157 LKRLEQLLTIIESWQKTRDMHTLLTEMAEAAAELFGSER----ASIFLWDRPKKTLVGRP 212 Query: 60 FQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD--GHIACDAA--SNSEIVLPLV- 113 G + +R+P RGV G V + +R++++ + I A + + + +PLV Sbjct: 213 ALGIEGGELRVPDDRGVVGHVVQTGEPRRVDELDKDEINRDIDQSLAFHTRNLLCVPLVG 272 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT-DYKKFFAS 162 + +I G ++ + G FT ED+ GL +L A L T + ++ AS Sbjct: 273 RRGRIFGAFELINKQLGNFTAEDQLGLTELAAHASSALENTQETERILAS 322 >UniRef50_C6P0P3 Metal dependent phosphohydrolase n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P0P3_9PROT Length = 543 Score = 56.0 bits (134), Expect = 4e-07, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGH-------IACDAASNSEIVLPLVV-KNQIIGV 121 GRG G A+ ++Q ++D + IAC AS + LPL+ + G Sbjct: 257 EFGRGPTGAAIRSGELQEVKDAYTDPRFAPWRAEAIACKCASI--LALPLMDSEGHAFGA 314 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLE 148 + ID+ F +E+ + LR+L + L Sbjct: 315 ITIDAAETNAFDEEEIRLLRELASDLA 341 >UniRef50_B5IEE2 Sensor protein n=3 Tax=cellular organisms RepID=B5IEE2_9EURY Length = 1568 Score = 56.0 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%) Query: 50 LEDDTLVLGPFQGKIAC---VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS 106 ++D TLV+ +G + + + RG+ N + +I + Sbjct: 1243 IKDHTLVIVKSRGYVNPDIKLDVESERGITAWVARNNLPYYSPNTDEDPLYITGVRGAKC 1302 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 E P+ + +++ GVLD+ +++D + + L + L + + +K Sbjct: 1303 EYATPISIDDEVYGVLDVQKDEPYSISEDDMKLIDLLANNMAVALRSLEIQK 1354 Score = 47.9 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 8/116 (6%) Query: 53 DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-----HIACDAASNSE 107 D L G + I + + I++ I S Sbjct: 546 DILTSGEKNLGPKEIEIDPENSLSSWVITSKSALLIKNFEKEKDKLPAKWIKVGKMPKSW 605 Query: 108 IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + +PL+ K +++G++ + S ++ + D + L AQL ++A + + + Sbjct: 606 LGVPLMYKGKVLGIIVLQSFKPYQYDENDRDFIMTLAAQLSIIIAN---AQLYNEL 658 Score = 45.2 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 13/131 (9%) Query: 35 LYERLTDINWAGFYLLEDDTL---VLGPFQGKIACVRI--PVGRGVCGTAVARNQVQRIE 89 LY+ D +W L E++ L +L I ++ + AV + Sbjct: 817 LYDIF-DFDWFFIALCENNMLNYVILKSRNKSIVNYKLECNPEHSLAARAVKEGKPLLFR 875 Query: 90 DVHVF---DGHIACDAA----SNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 142 D+ + +I + + S I+ PL+ KN+ +GV+ I S + + D + + Sbjct: 876 DLPKEVREENYILIEGTEEVPTRSVIIFPLLYKNERLGVISIQSKRPNVYNENDVKYVST 935 Query: 143 LVAQLEKVLAT 153 + + + Sbjct: 936 IAHAISIFIKN 946 >UniRef50_B9Z5D4 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z5D4_9NEIS Length = 803 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 21/164 (12%) Query: 11 NRDFNALMAGETSFLATLANTSA-LLYERLTDINWAGFYLLEDDTLVLGPFQ--GKIACV 67 R+ L + E + L ++ + W GF ++ + + PF G A Sbjct: 192 ARNVRHLGSRELAAQTLLREVCETVVEHGGIHMAWVGF--IDPASQRIDPFAWAGADAAR 249 Query: 68 RI-----------PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS-----NSEIVLP 111 + P G+G G AV Q+Q +ED + A + S + P Sbjct: 250 YLVGITVSTDPARPEGQGPSGRAVRSGQLQLLEDSLNAPSYHAWSQHALRQGFRSSVATP 309 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 L +IGVL++ + G F E+++ + + +++ L D Sbjct: 310 LWRDGAVIGVLNLYAAAPGFFGAEEQRLAKAIADKIDLALGHLD 353 >UniRef50_B4UII9 Diguanylate cyclase n=3 Tax=Anaeromyxobacter RepID=B4UII9_ANASK Length = 494 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 53/153 (34%), Gaps = 9/153 (5%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKI--- 64 L D + G +A + L+ L D +A L E+ T LV+ G Sbjct: 147 LLFDLARRLGGTLELDRLVATLTELVGRGLGDHAFA-LLLAEEGTGDLVVRSVSGLPESA 205 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH--IACDAASN-SEIVLPLVVKNQIIGV 121 VRI G G G AV ++D +A + S + +P++ + GV Sbjct: 206 NGVRIRAGEGPAGWAVRERATVLVKDTGADPRRPVLAWQGEAQGSILAVPMIHREDCAGV 265 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 L F ++ + L + Q + Sbjct: 266 LAFFRPATDAFPPDEVRLLESVAGQAALAIENA 298 >UniRef50_D0LGB0 Sensor protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LGB0_HALO1 Length = 602 Score = 55.6 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 13/127 (10%) Query: 47 FYLLEDDTLVLGPF--QG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----I 98 Y+L DD L QG + + +R+ VG G+ G A A ++ I D + + I Sbjct: 57 LYVLSDDGETLWSKVLQGDEFSEIRLKVGEGIAGWAAASGELVNIPDAYSDERFQPAVDI 116 Query: 99 ACDAASNSEIVLPLVV-KNQIIGVLDIDSTVF-GRFTDEDEQGLRQLVAQLEKVLATTDY 156 + S + P+ K++I+GVL + + G FT +D + L L + + + Sbjct: 117 KSGYRTRSILCAPMRNSKSEIVGVLQVLNKQAGGPFTVDDAELLTALA---SQAGLSVEN 173 Query: 157 KKFFASV 163 K + SV Sbjct: 174 SKLYHSV 180 Score = 52.5 bits (125), Expect = 5e-06, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 18/110 (16%) Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEI--------V 109 GP ++ +P+G GV G +VA +Q + D + H + A E+ Sbjct: 259 GPVATELEHRTLPMGEGVLGWSVAHDQPVIVNDPRADERHASAFAE---ELGFMPAHLVC 315 Query: 110 LPLVVKNQIIGVLDI------DSTV-FGRFTDEDEQGLRQLVAQLEKVLA 152 PL ++++G +++ DS F++ED + + + Q K ++ Sbjct: 316 APLRSGDEVLGGIELIDKVSRDSDADAAGFSEEDLKLVVLIAGQAAKAIS 365 >UniRef50_A9AUY3 Sensor protein n=2 Tax=Bacteria RepID=A9AUY3_HERA2 Length = 701 Score = 55.6 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 6/107 (5%) Query: 51 EDDTLVLGPFQGKIACVRI------PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 E L QG I P GV G + + D+ Sbjct: 215 EHGEYRLIASQGYPPTAGISERTSWPWNVGVVGRVARTGKAALLTDIAHDSEWQLSTPDV 274 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +EIV+P+ V+ + VL + + FT D ++ L + L Sbjct: 275 RAEIVVPVRVEGEAWAVLVLSTNREPIFTTRDLYFIQALADVAARPL 321 >UniRef50_A7I8H7 Sensor protein n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8H7_METB6 Length = 1325 Score = 55.6 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 5/95 (5%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS-----NSEIVLPLVVKNQIIGVLD 123 IP GRG G AV + D+ I + S P+ + ++IG Sbjct: 185 IPEGRGPTGRAVREGRPVVTNDIRQDPAMILWHETAEKFGYRSSGAFPICCRGEVIGAFS 244 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 + ++ F+ E+ L ++ ++ L + +K Sbjct: 245 LYASEPEFFSPEEVALLEEVAEEISFALDNLEREK 279 >UniRef50_C5D1A1 Sensor protein n=1 Tax=Variovorax paradoxus S110 RepID=C5D1A1_VARPS Length = 699 Score = 55.6 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 38/161 (23%), Positives = 57/161 (35%), Gaps = 14/161 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV------ 56 + Y+D L L + A+ E L + A LLE+ L Sbjct: 147 QRARYSDYLAQLGRLAVDTRDLQVVLDHVPAMAAEALE-VEVAVVLLLENSRLEFRVASG 205 Query: 57 LGPFQGKIACVRIPVGRGVC-GTAVARNQVQRIEDVHVFDGHIAC-----DAASNSEIVL 110 +G G+ RIP G A + + D + + A DA S + + Sbjct: 206 VGLVPGEEIGARIPSHANTPPGFVFAEGRPVVVAD-YGNERRFAVPQAYLDAGLVSALAV 264 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 P + + IGVL + S RF DE+ + L L L L Sbjct: 265 PFYDRGRFIGVLAVRSREAKRFGDEELRFLESLSNLLATSL 305 >UniRef50_D1XIR6 Sensor protein n=4 Tax=Streptomyces RepID=D1XIR6_9ACTO Length = 1438 Score = 55.6 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 26/154 (16%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWA---GFYLLE----DDTL-VLGPFQ- 61 + LM G L AL+ E LT + A FYL E L ++G + Sbjct: 637 LARVSGLMQGHRD----LELVGALVMEELTPLVAAQYGAFYLAEETPEGTELRIVGSYGR 692 Query: 62 --GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDA-----ASNSEIVLPLV 113 G R +G + G A + + V G +I+ + S IVLP+V Sbjct: 693 PAGGNGHDRFKMGESLVGQAARSRRTIAADGV---PGDYISISSGLGPMTPGSLIVLPVV 749 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 V +Q++GV+++ S F FT L QL+ + Sbjct: 750 VDDQVLGVIELAS--FTAFTPIHRDFLEQLMEMV 781 >UniRef50_Q2SC53 Phosphotransferase system enzyme I PtsP n=2 Tax=Gammaproteobacteria RepID=Q2SC53_HAHCH Length = 761 Score = 55.6 bits (133), Expect = 6e-07, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 12/121 (9%) Query: 45 AGFYLLED--DTLVLGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI 98 YLL++ LVL +G + VR+PVG+G+ G + ++ Sbjct: 41 CSIYLLDETSQELVLMATRGLDPESVGRVRLPVGQGLVGYIAQHQSLMNVDSAEKHPNF- 99 Query: 99 ACDAASNSE-----IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 + E + P++ + IGV+ + F+DE E + + AQL L+ Sbjct: 100 KYFPETREERFSAFLGAPIINFRKNIGVIAVQKKEAAYFSDEQEAFVVTIAAQLAGPLSQ 159 Query: 154 T 154 Sbjct: 160 W 160 >UniRef50_Q0A623 Putative GAF sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A623_ALHEH Length = 241 Score = 55.2 bits (132), Expect = 6e-07, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 23/164 (14%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD------TLVLGP 59 + + R + S L S L+ + L++ D L + Sbjct: 7 RFDEDLRKLARFVEETESAERGLTQLSQLVSHAM-GCRHCSIMLVKHDPDSGEPQLRVQA 65 Query: 60 FQGKIACVRI----PVGRGVCGTAVARNQVQRIEDV--HVFDGHIACDAASNS-----EI 108 G + P+G G+ G + + I DV F G A S I Sbjct: 66 HHGDLPEAAYDDAQPLGSGIAGRVASSGKPLLISDVDHSEFAG----LALRQSGKGPDSI 121 Query: 109 VLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVL 151 +P+V++++++GV+++DS G R ++D + L + K L Sbjct: 122 SVPIVLEDEVVGVINVDSPEGGRRLGEDDLRMASILALVVAKSL 165 >UniRef50_B5JVZ7 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVZ7_9GAMM Length = 760 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 18/131 (13%) Query: 45 AGFYLLEDD----TLVL----GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG 96 YL E+ LVL G I +R+ G G+ GT R + ++ Sbjct: 38 VSVYLAEEHNTGTELVLRASKGLKSKAIGKIRMRFGEGLVGTVAERAEPLNLDHAAAHP- 96 Query: 97 HIACDAASNSE-----IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ----L 147 H + E + P++ Q +GVL + F ++ L L AQ L Sbjct: 97 HFKYFPETGEESFHSFLGAPIINYGQTLGVLVVQQRTPRLFDEDHVAFLITLAAQLGASL 156 Query: 148 EKVLATTDYKK 158 + A D+ + Sbjct: 157 SQAAANQDFNQ 167 >UniRef50_A1K5K2 Conserved hypothetical signaling protein n=2 Tax=Proteobacteria RepID=A1K5K2_AZOSB Length = 1089 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 32/84 (38%), Gaps = 5/84 (5%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFD-----GHIACDAASNSEIVLPLVVKNQIIGVLDI 124 GRG G AV Q + D+H IA + + LPL + GVL + Sbjct: 423 EHGRGPAGLAVRSGAPQVVHDIHRHPQLQRWRRIAAERGFKAAAALPLRSDGETYGVLCL 482 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLE 148 S F ++ + L +L + Sbjct: 483 VSVDPQAFDADEVELLAELADDIA 506 >UniRef50_C1ZGB5 Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=2 Tax=Planctomyces RepID=C1ZGB5_PLALI Length = 566 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 37/84 (44%) Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 GV G A E+ ++ + S + +PL++ ++++G +++S+ G Sbjct: 263 NNGVTGFVAATGSSYLCEETSSDPLYLPGALGARSSLTVPLILHDEVLGTFNVESSKAGA 322 Query: 132 FTDEDEQGLRQLVAQLEKVLATTD 155 F+ D Q L ++ L T + Sbjct: 323 FSHRDLQFLELFAREIAISLNTLE 346 >UniRef50_B3PSI9 Hypothetical conserved protein n=5 Tax=Rhizobium etli RepID=B3PSI9_RHIE6 Length = 448 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC--------DA---------ASNSEIVL 110 +P GRG+ G A R + RI D+ ++ DA S+I L Sbjct: 209 EVPAGRGIIGLAAERRRNVRITDLSRGLRYLQAVRAMAGVEDATPIPLPALDKPLSQIAL 268 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 PLV + +++GVL +ST F DE+ L + A L L+ ++ A G Sbjct: 269 PLVARGRLVGVLFSESTERFTFRHRDEEALIVIAAHLATALSFLSEERERAETNG 323 >UniRef50_B1KQK6 Sensor protein n=3 Tax=Gammaproteobacteria RepID=B1KQK6_SHEWM Length = 1713 Score = 55.2 bits (132), Expect = 7e-07, Method: Composition-based stats. Identities = 36/163 (22%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLG- 58 M + E + ++R N L G + +A + L + + + + Y EDD L L Sbjct: 766 MKQNELKSQVSR-INELTQGASDLMAMADEIISALSQMMKAGHGVIYTYDQEDDGLSLSG 824 Query: 59 --PFQGKIACV-RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-ASNSE----IVL 110 F+ + A + I +G G+ G + + V +I ++ S +V+ Sbjct: 825 SYAFKKRKAVLPSISIGEGLVGQCAKERKAILLSQVPAD--YIQINSGLGQSSPLNVLVV 882 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 P++ + +IGV+++ S F FTDE + + + + L V+ Sbjct: 883 PVLFEEALIGVIELAS--FEGFTDEQVEVIELISSNLGIVINN 923 >UniRef50_Q0AME3 PTSINtr with GAF domain, PtsP n=3 Tax=cellular organisms RepID=Q0AME3_MARMM Length = 763 Score = 55.2 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 69/170 (40%), Gaps = 17/170 (10%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINW--AGFYLLEDDT-LVL----GPF 60 +L + LMA + + A L + +AL+ E W YL L L G Sbjct: 13 RNLLKRMRLLMAVQENAQARLDHLTALIAEE---AGWDVCSIYLARPSNALELCATFGLK 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE-----IVLPLVVK 115 + + VR+ G G+ G R + + + + E + +P++ Sbjct: 70 REAVHSVRLRPGEGLVGLVARRARPLATSNARQHPSF-SYKPETGEEPFDTFVGVPILRG 128 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 +++GVL ++V + ++ + L+ + L +++A+ D A +AG Sbjct: 129 GRMVGVLTAQTSVERQIAADEIETLQTVAMVLAEIVASGDIVDA-AEMAG 177 >UniRef50_A3VUX2 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VUX2_9PROT Length = 765 Score = 55.2 bits (132), Expect = 8e-07, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 20/160 (12%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPFQG---- 62 L R +MA ETS A L + + + Y+ DDTL L +G Sbjct: 19 RALLRRIRDIMATETSAQARLDRLATAIAANMVGDV-CSIYVRRSDDTLELFATEGLRSD 77 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE---------IVLPLV 113 I R+ V G+ G + D H A A +E + +P+ Sbjct: 78 AIHHTRLAVDEGLVGYVANSKTPVQTSDARS---HHAF--AYRAETGEDGLNAFLGVPIT 132 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 Q++GVL I + F +E+ + + + L +V+AT Sbjct: 133 RSGQVLGVLVIQNRSKRVFAEEELEVAQTVATILAEVVAT 172 >UniRef50_A1ZM46 PAS n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZM46_9SPHI Length = 1447 Score = 54.8 bits (131), Expect = 9e-07, Method: Composition-based stats. Identities = 39/157 (24%), Positives = 64/157 (40%), Gaps = 16/157 (10%) Query: 11 NRDFNALMAGETSFLATLA-NTSALLYERLTDINWAGFYLLEDDT--------LVLGPFQ 61 F ++ +A LA N + L + + N G ++L D+ L FQ Sbjct: 438 LAKFGEILRSNNDNVAELAYNIISSLVDYV-GANQGGLFVLNDENKDDVYLELLSAYAFQ 496 Query: 62 GKIACV-RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC---DAASNSEIVLPLVVKNQ 117 K RI +G GV G AV + + DV I +A S +V+P+ V +Q Sbjct: 497 TKKYHTKRIEIGEGVTGEAVREKRTIYMTDVPDEYVQITSGLGEANPRSVLVVPMKVNDQ 556 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 I GV++I S F + + +L + +A+ Sbjct: 557 IHGVIEIAS--FETYEKYQIGLIEKLAESIASTIASV 591 >UniRef50_A1RCI2 GAF domain protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1RCI2_ARTAT Length = 634 Score = 54.8 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 58/159 (36%), Gaps = 16/159 (10%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVL---- 57 E A + ALM+ LA LA + L R T A YL + D LVL Sbjct: 28 AERRAATLAELTALMSEGRDSLA-LAQRAVELTARATRAAGAFVYLWDRDEERLVLRVAT 86 Query: 58 -GPFQGKIACVRIPVGRGVCGTAVARNQVQRI-EDVHVFDGHIACDAAS-----NSEIVL 110 G QG + +++ +G GV G Q + +D + S + + Sbjct: 87 DGWQQGHLGKIKLRIGEGVTGWVALMRQAVVLGKDPQKDPRY-KDFPELREGSFRSMVAI 145 Query: 111 PLVVKNQ-IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 P+V + ++GV + + F D ++ L Sbjct: 146 PIVAPGEDVLGVFTLYALKKNAFDSSDVSLASEVGGLLA 184 >UniRef50_C9RIK1 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIK1_FIBSS Length = 509 Score = 54.8 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 4/84 (4%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE----IVLPLVVKNQIIGVLD 123 R VG G+ G V + I V + +E + +P++++ +++G L Sbjct: 76 RYKVGEGITGRVVETGKPIIIPSVAKDPDFLDRTGRGKTEDKAFLCVPIIMEQEVVGALS 135 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQL 147 D D+ L +++AQ+ Sbjct: 136 ADEHNPDEANLNDQIHLLEIIAQM 159 >UniRef50_C1VB04 Sensor protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VB04_9EURY Length = 456 Score = 54.8 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 9/100 (9%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFD-------GHIACDAASNSEIVLPLVVKNQIIGVL 122 P G+G G A+ ++Q I +V A DA S + V+P+ + G++ Sbjct: 140 PTGKGAGGRAIKSGEIQCIPNVFEDPTMQPWWDQFEALDAESLA--VVPIRDDETVYGLI 197 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 I + F + +++ L +L + + + + + A Sbjct: 198 SIYADRQNVFDEREKEVLSELGDTIGHAITSIETHEQLAE 237 >UniRef50_B5IA56 Sensor protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IA56_9EURY Length = 1181 Score = 54.8 bits (131), Expect = 1e-06, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 53/157 (33%), Gaps = 20/157 (12%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K E Y +++ + + +A S ++ W G + ++ L Sbjct: 833 SKDEIYELAINALTSILNLK---IVVIAEVSG---NKIIPAKWKG--VTPPQSMDLYSKN 884 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + G N+ D ++ + + S+ P+ + G+ Sbjct: 885 S------------IVGWVTKNNKPYYTPDASKDPLYLRVNPETKSKYATPISSNHTFFGI 932 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 L+++S +++D + + + + +A Y K Sbjct: 933 LNVESDKIDGISEDDRLLIDLMASHIAVAIAGLKYHK 969 Score = 41.0 bits (95), Expect = 0.016, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 56/160 (35%), Gaps = 28/160 (17%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K +F+ + ++ L+ + ++ L + F E L P + Sbjct: 128 KEDFFMETYKNLKKLLKFNSFAIS--------LVNKDKKSFTVVFSYEEGKRL---PKR- 175 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD--------GHIACDAASNSEIVLPLVV 114 + + G + ++ I++V GH +S + +PL+ Sbjct: 176 ---TYNLDPHGSLTGWVIYNKKMLYIKNVKKEKLPSKTHQVGH-----TISSWLGIPLIH 227 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + +++G L I F +D + L+ L A + +L Sbjct: 228 RGEVLGALVICGFEPEAFNKDDVKLLKTLAAYISLILKNV 267 >UniRef50_B4W0C6 Sensor protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4W0C6_9CYAN Length = 1821 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 60/153 (39%), Gaps = 21/153 (13%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDDTLVLGPF------QGKIA 65 L E L N ++ + W GF D+ + P +G + Sbjct: 370 QALVLATDEP---TLLHNICQIIVDFGGYRCAWIGF-AQHDNAKTVRPVAQAGYEKGYVE 425 Query: 66 CVRI-----PVGRGVCGTAVARNQVQRIEDVHVFDGH-IACDAASN----SEIVLPLVVK 115 ++I G G GTA+ + + I+++ + + DAAS + I LPL+V+ Sbjct: 426 ALQISWGDNQRGTGPTGTAIRTQEPRIIQNILTDPSYRLWRDAASQQGYAASIALPLIVE 485 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 +G L+I ++ F + + L +L L Sbjct: 486 GTCLGALNIYASEPDAFDPAEVRLLTELANDLA 518 >UniRef50_C8S7I7 Putative PAS/PAC sensor protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7I7_FERPL Length = 695 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 56/151 (37%), Gaps = 16/151 (10%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-------- 62 + + E + L + ++ E W G Y ED ++ G Sbjct: 55 VSQAVSKIDDEKALLKAVCEI--IVKEGGYAYAWVG-YKKEDKSVQPVAKAGEGDYAYEI 111 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEIVLPLVVKNQ 117 KI G+G GTA+ ++ + ++ A S I LPL VK + Sbjct: 112 KITWDESETGKGPTGTAIRTGEIVIVREIDKDQRFAPWREKALKKGYRSSIALPLKVKGE 171 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 +IG L+I + F +++ L+++ + Sbjct: 172 VIGALNIYAFEKDAFDEDEVGLLKEVAEVVS 202 >UniRef50_A2DG30 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DG30_TRIVA Length = 1090 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 20/145 (13%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF--QGKIAC 66 D+ + ++ +T + + LL +L+ + L + G Sbjct: 348 DVAEQLSGVLDIDTLIPMIMQRSCDLLEAER-----CSLFLVNNTQTELISYFHAGLTTE 402 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA--------SNSEIVLPLVVK-NQ 117 +RIP+ G+ G ++Q + + + D++ + + I +P+ + Sbjct: 403 IRIPINTGIVGVTATTGEIQVVNNAYEDPR---FDSSVDKKTGFKTRNIITVPIFNNRGE 459 Query: 118 IIGVLDI-DSTVFGRFTDEDEQGLR 141 I GV ++ + FT++D LR Sbjct: 460 IAGVTELMNKITSDAFTEDDVSLLR 484 Score = 39.0 bits (90), Expect = 0.062, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 15/80 (18%) Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVL-PLVVKN-QIIGVLDIDS 126 G A+ NQ+ +DV GHI C A S IV+ P + ++ GV S Sbjct: 244 TGCVSWALKNNQIIIEQDVQQAPGHIPSIDGCFAES---IVVYPFIENEHKVWGV----S 296 Query: 127 T--VFGRFTDEDEQGLRQLV 144 F + D L+ +V Sbjct: 297 LRGRISGFRNSDIAKLKTIV 316 >UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAA4_SPHTD Length = 555 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG---HIACDAASNSEIVLPLVVKNQ 117 QG + +P+ + G ++ DV I S +V+PL+V+++ Sbjct: 69 QGVLLGEVVPLDGSLSGYCFRGSRPVVSSDVQSDPRLGQEIKKATRFGSMLVVPLLVRDR 128 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 IGVL + S G F++ED+ L L ++ + + + + G Sbjct: 129 PIGVLLVGSYARGAFSEEDQTLLCLLA---DQAASAIENSRLYQQAQG 173 Score = 40.6 bits (94), Expect = 0.021, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 12/89 (13%) Query: 79 AVARNQVQRIEDVHVFD-------GHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 A+ Q + DV + GH S I PL+ N++IG+L S V R Sbjct: 252 ALEERQPVMVGDVLDAEATPMRSVGHTR--TKVRSVIAAPLIQGNEVIGLLSAQSYVPHR 309 Query: 132 FTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 + + D + L + + + + + Sbjct: 310 YRECDARLLMTIANH---AVVAIENARLY 335 >UniRef50_Q23PX5 GAF domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23PX5_TETTH Length = 906 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 45 AGFYLLEDDTLVLGPFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC--- 100 A +L++ L + + +R+ +G+G+ G ++ + D H + Sbjct: 585 ASVFLIDPKRNELWTKVARHSKPIRVQIGQGLVGQVAQTGEILNVLDAHQDYRFNSDADK 644 Query: 101 --DAASNSEIVLPLVVKNQ--IIGVLD-IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 + + S + LP+ +NQ IIGVL I+ FT EDE L + VL + Sbjct: 645 KNNYRTKSVLCLPIKDQNQSHIIGVLQAINKKDGDFFTKEDESLLIIISQLATAVLRNSL 704 Query: 156 Y 156 Y Sbjct: 705 Y 705 >UniRef50_A9AVU3 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVU3_HERA2 Length = 885 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA---CDAASNSEIVLPLVVKNQII 119 + + + G+G+ G V I + + D S + +P+ ++ Sbjct: 420 RTEAISLERGQGLAGWVVEHRAPVIIPNTAEDSRWMVRTDYDKKGRSALAVPMEQDGRVA 479 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 GV+ + ++ FT E Q ++ + Q+ +L+ Sbjct: 480 GVIVLINSRINHFTQEHIQFVQVIGDQVMTMLSNV 514 >UniRef50_Q2IE06 Putative GAF sensor protein n=4 Tax=Anaeromyxobacter RepID=Q2IE06_ANADE Length = 467 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 22/104 (21%) Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGH---I------ACDAA-------------SN 105 + +G G+ GT R ++ R+ V + I A DAA + Sbjct: 223 EVALGAGIIGTVAERRRMIRVAGVGGELRYGRAIRGRVAEAGDAAGLAPEIPLPGLPDAQ 282 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 +++ LPL+V ++++GVL ++S +F + DE L+ + Q+ Sbjct: 283 AQLALPLLVGDRLVGVLAVESRDPLQFDEWDEAFLQIVANQIAM 326 >UniRef50_C8XKF3 Putative transcriptional regulator, PucR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XKF3_NAKMY Length = 705 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 15/132 (11%) Query: 45 AGFYLLEDDTLVLGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC 100 G L E + + + G + A +R+ G+G+ G + ++ D ++ D I+ Sbjct: 163 CGVMLREGERVCMRACVGNRVAQTARLRMRRGQGLAGLVFDIGRPAKV-DTYLEDRTISP 221 Query: 101 D-------AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 D + S + +PL + ++IGVL++ FT+ DE + L Sbjct: 222 DFMSLAEQEETRSALAVPLRLHGELIGVLEVWRRRPSTFTEHDEHRMVVLADI---ATVA 278 Query: 154 TDYKKFFASVAG 165 D + A Sbjct: 279 IDNARLHDEQAA 290 >UniRef50_Q1D5B9 Sensor protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1D5B9_MYXXD Length = 700 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 48 YLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS--- 104 YL+ +L+ PF G R+ V + G ++ + +V R +D D + A Sbjct: 200 YLVASGSLM--PFIG----FRLKVEGSLTGASLLQGEVMRTDD-SETDVRVNVTALRQVG 252 Query: 105 -NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 S I +PL + + +GVL++ S F D D + L + L + + + Sbjct: 253 ARSMICVPLWREGRPVGVLNVTSRRPNTFEDRDVRTLELMAGLLGAAMGNAAEAQARQEL 312 >UniRef50_C0QJL4 Sensory signal transduction histidine kinase (PAS/PAC domain protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJL4_DESAH Length = 1066 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 14/105 (13%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG----HIACD-AASNSEIVLPLVVKNQI 118 + +GV + +V ++ + SNSE+ +P++ ++ Sbjct: 633 PPHYKQRYDQGVLSHVYLTGKPIFTGNVKEDRDIKDYYLQGFESESNSELCVPIMAYGKV 692 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +L+I+ + F+ ++ + L+ ++ ++ +L F + Sbjct: 693 FWLLNIEDPLENAFSSDEVEELQVVLGEIGVILEKAFQHHFLREI 737 >UniRef50_C7PAM9 Sensor protein n=7 Tax=Bacteroidetes RepID=C7PAM9_CHIPD Length = 1203 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 14/153 (9%) Query: 20 GETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVL-GPFQ--GKIACVRIPVGRGV 75 GE + + L E A YL D L L G F IP+G+G+ Sbjct: 295 GEKNVETLTGHIVEFLAEYTHSQVGA-LYLTGPDNRLYLSGSFALANTANRREIPIGQGM 353 Query: 76 CGTAVARNQVQRIEDVHVFDGHIACDAAS-----NSEIVLPLVVKNQIIGVLDIDSTVFG 130 G + ++D+ +I AS + + +P+ + + GV+++ S Sbjct: 354 VGQCAISGKTLLLQDIT--PENITISYASGEIRPRNIVAVPIHYEGYVRGVIELAS--LT 409 Query: 131 RFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +T D L ++ + + T++ ++ + Sbjct: 410 AYTPNDLAFLESVMHNIGLSINTSENRRRVQEL 442 >UniRef50_C1VCP9 PAS domain S-box n=2 Tax=Halobacteriaceae RepID=C1VCP9_9EURY Length = 923 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 11/94 (11%) Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHIACDA--------ASNSEIVLPLVVKNQIIGVLDI 124 G G A ++Q +++ H D S +P++ ++ I GVL++ Sbjct: 600 NGPTGRAFKTGEIQTTQNIDQDPSH---DPWREHIEAHEFRSSAAIPIIHEDAIYGVLNV 656 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 S F E+ + QL + +A T+ K+ Sbjct: 657 YSKRLNAFEGEERAVVEQLGEIIGHAIAATERKR 690 >UniRef50_B8DQY9 Transcriptional regulator, NifA subfamily, Fis Family n=8 Tax=Desulfovibrio RepID=B8DQY9_DESVM Length = 579 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 15/118 (12%) Query: 51 EDDTLVLGPFQGKIACVR----IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS 106 E LV+ G R + GV GT + + DV + A Sbjct: 54 ETGQLVIAASHGLTPEERGRGVYRLDEGVTGTIFQTARPYIVRDVRTDPLFLDRTGARKV 113 Query: 107 E------IVLPLVVKNQIIGVLDID---STVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 E + +P++ + IGVL++D S T ED + L + + + L+ + Sbjct: 114 EKGKISFLGVPILKQGAPIGVLNVDRLFSDDVS--TSEDVEFLGIVATLVAQFLSLNE 169 >UniRef50_A9KD89 GGDEF family protein n=6 Tax=Coxiella burnetii RepID=A9KD89_COXBN Length = 332 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 29/154 (18%), Positives = 54/154 (35%), Gaps = 11/154 (7%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGPFQ 61 + + L + L+ + + T NW+ Y DD L + Sbjct: 5 QQKKLQLLFSHISELIISPYKVDTVIEKIMEEVENFFTPTNWSLLRYDSVDDELFFVYAK 64 Query: 62 GK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEIVLPL 112 G I +R+ G G+ GT + I D + + S I +P+ Sbjct: 65 GLDEEIIKGIRLKRGEGIAGTVAETGKSLFIRDCQNDPRFSKKVDRSFKQKTRSIIAVPI 124 Query: 113 VVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVA 145 K+ ++GVL++ + F++ED L + Sbjct: 125 KFKDVLLGVLELVNLENNVYFSEEDCFLLEIVAN 158 >UniRef50_A5UQK5 Sensor protein n=2 Tax=Roseiflexus RepID=A5UQK5_ROSS1 Length = 1017 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 59/169 (34%), Gaps = 30/169 (17%) Query: 1 MNKTEFYADLNRDFNAL-------------MAGETSFLATLANTSALLYERLTDINWAGF 47 +++ Y R L + + L + LL + Sbjct: 307 LDRAWLYERAERQAQQLLVLNRIGRIITSSIDPQQVPDIILRQVTELLDAEES-----SL 361 Query: 48 YLLED--DTLVL----GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIAC 100 L +D +V G +I R+P G G+ G A Q + DV + + + Sbjct: 362 LLTDDHTGEMVFAYTTGQVGKRILGQRLPRGVGIAGYVAATGQSVIVNDVQSDERFYRSM 421 Query: 101 DAA----SNSEIVLPLVVKNQIIGVLDIDSTV-FGRFTDEDEQGLRQLV 144 D + + + + +PL + GV+++ + FT ED++ L L Sbjct: 422 DLSTGYTTRTLLAVPLRGVGGVEGVIEVLNRRDLRPFTVEDQRLLEALA 470 >UniRef50_D1CEK7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Bacteria RepID=D1CEK7_THET1 Length = 1785 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 5/96 (5%) Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN----SEIVLPLVVKNQI 118 ++ +R+ G G+ G + + D +N S + +P+ +++ Sbjct: 399 EVDNLRVGFGEGITGWVAQHGEPALLHDAAKDTR-TRLIPGTNDIDESMLAVPIKYDDRV 457 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +GV+ + +F +ED Q L L Q + Sbjct: 458 VGVITLSKVGLNQFDNEDLQLLVILADQAAIAIENA 493 Score = 46.4 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 52/135 (38%), Gaps = 22/135 (16%) Query: 46 GF-YLLEDDTLVLGPFQGK-----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA 99 GF YL +DDT L + G + G GV G + ++D +I+ Sbjct: 927 GFVYLEDDDTSKLRLWVGTGVFTDYENTWLEPGEGVSGRVWRTGKPVILKD------YIS 980 Query: 100 CDAASN--SEIV------LPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKV 150 + E+V +P+ + + +G L S T F+++D L +L Sbjct: 981 WPHRARMFDELVFHAVMAVPIFLNGRSVGSLGFVSFTQGKVFSEDDLHLLHRLADLASIA 1040 Query: 151 LATTD-YKKFFASVA 164 L + Y++ ++ Sbjct: 1041 LENSRLYQQLEKELS 1055 >UniRef50_Q0F301 Sensory box protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F301_9PROT Length = 1037 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 24/105 (22%) Query: 60 FQGKIACVRI-----PVGRGVCGTAVARNQVQRIEDVHVFD------------GHIACDA 102 G +RI P GRG G A+ + + I+D+ G+ AC Sbjct: 714 KPGYTNGIRISWADVPEGRGPTGMAIRTGKSRYIQDIGHDPAMAPWQENALAYGYKAC-- 771 Query: 103 ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 I LPL + GVL I + F +++ L ++ L Sbjct: 772 -----IALPLFENGKPFGVLTIYAAEPNAFNNKEVALLEEMAGDL 811 >UniRef50_A0JZS9 Putative GAF sensor protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JZS9_ARTS2 Length = 245 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 17/144 (11%) Query: 35 LYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIP-------VGRGVCGTAVARNQVQR 87 + + + G L+++D L G V I +G+G C A + Sbjct: 38 IRDAFPGCSGVGVSLVDEDG-GLSS-AGSTDTVVINADAAQYELGQGPCLRAWESQRTVL 95 Query: 88 IEDVHVFDGH-----IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQ 142 + D + A D + S + PLVV ++ +G L + S++ G F + L + Sbjct: 96 VNDAGSDERWPLWSRAARDLSIKSVVSSPLVVASRCLGALKVYSSLPGAFDNAAALSLEK 155 Query: 143 L---VAQLEKVLATTDYKKFFASV 163 A L + D + F V Sbjct: 156 FAVPAATLLDHIQGPDTPRRFTEV 179 >UniRef50_C8X2Z9 Diguanylate cyclase with PAS/PAC and GAF sensors n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X2Z9_DESRD Length = 581 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 6/90 (6%) Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-----SEIVLPLVVKNQIIGV 121 +R+P+ + G A + + DV D I A + S I++PL +I GV Sbjct: 205 LRLPIDQSASGLAYRSKEPVLVRDVDRDDR-IQLKAKAREIGFLSGIMVPLAQAGRIFGV 263 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 L + + F + D+ L L L Sbjct: 264 LKVYANQADHFHERDQYFLEVASGVLAANL 293 >UniRef50_Q1PWN3 Sensor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PWN3_9BACT Length = 1225 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 32/169 (18%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED------DT 54 ++ E Y L+ +F+ ++A + +A L + + F + +D + Sbjct: 711 LDIREVYKSLSEEFHKVIAFDRLSIALLDE---------KRVEFLTFAVSKDYRFSELEE 761 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD---GHIACDAASNSEIVLP 111 V QG +A G V + + D I S + +P Sbjct: 762 GVQYSKQGTLA-----------GKVVEDGEFFVVHDTSRGPFSTDPILSKEGIKSRLSVP 810 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 L+ K +IIG L+ S FT+ + ++V QL + D + F Sbjct: 811 LICKGEIIGSLNFGSKKVNNFTEAHVDVINKIVPQLAIAI---DNTRLF 856 >UniRef50_C1V4X1 GAF domain-containing protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V4X1_9EURY Length = 403 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 5/85 (5%) Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFG 130 V G+ G + Q ++D+ + D + A S + +P GV+ + S Sbjct: 193 VSEGIAGRTYRTGKTQLVDDIALDDDTL-FSEARRSTVSVPF----GPYGVIQVVSNSPN 247 Query: 131 RFTDEDEQGLRQLVAQLEKVLATTD 155 F + D + L L + L+ D Sbjct: 248 AFDERDAEFLEILADYTAEALSRLD 272 >UniRef50_P74400 Sll0267 protein n=3 Tax=Bacteria RepID=P74400_SYNY3 Length = 1578 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 47/125 (37%), Gaps = 26/125 (20%) Query: 44 WAGFYLLEDDTLVLGPFQG------KIACVRI-----PVGRGVCGTAVARNQVQRIEDVH 92 W G L++ D + P+ + +RI P GRG GTA ++ ++ Sbjct: 879 WFG--LIDPDRQTIIPYMAGGHTTAYLENIRITFKDEPAGRGPTGTAAREGRLVICSNIS 936 Query: 93 VFDGHIACDAASN---------SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQL 143 A S +P+ Q++ VL S G F+++++ L+++ Sbjct: 937 QDPK----MAPWRGSAMRYGFLSSAAVPIRQGGQVVAVLTFYSQEAGFFSEDEQDLLQEI 992 Query: 144 VAQLE 148 L Sbjct: 993 SDNLS 997 >UniRef50_A3EWI4 Putative GAF sensor protein n=3 Tax=Leptospirillum RepID=A3EWI4_9BACT Length = 421 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 14/158 (8%) Query: 11 NRDFNALMAGETSFLAT--LANTSALLY---ERLTDINWAGFYLLEDDT-LVLGPFQGKI 64 R AL S + L L+ +T+ N + + + LV+ Q Sbjct: 195 ARQIEALSQVSQSIASNRYLEEILHLIVTVTAEMTNSNLCSIMIHDPEEGLVIRATQTLS 254 Query: 65 ACVR----IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV----LPLVVKN 116 R I +G + G ++EDV + D A +V +P+++K+ Sbjct: 255 QEYRNKPPIKIGESISGIVFRDATPIQVEDVQKDPRYSFKDLARKENLVSLLSVPMMIKS 314 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + IGV+++ ++ F+ ++ + L+ + Q T Sbjct: 315 RAIGVINVYTSQPHLFSQDEIKVLQSVANQAAIAWENT 352 >UniRef50_B4RZF3 Phosphoenolpyruvate-protein phosphotransferase PtsP n=9 Tax=Bacteria RepID=B4RZF3_ALTMD Length = 772 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 54/145 (37%), Gaps = 17/145 (11%) Query: 24 FLATLANTSALLYERLTDINWAGFYL--LEDDTLVLGPFQG----KIACVRIPVGRGVCG 77 L ++ + L +++ YL E +L G + VRI G+ G Sbjct: 27 LDTALFRLASRVKHTL-NVDSCSIYLADYEAQEFILKATDGLHPDAVEQVRIGFSEGLIG 85 Query: 78 TAVARNQVQRIEDVHVFDG--HIACDAASNSE-----IVLPLVVKNQIIGVLDIDSTVFG 130 R + I + H H E + P++ + +++GV+ + Sbjct: 86 LVGQREEPLNIVNAHSHPRFKH---YPEVKEEKYNAFLGTPIINQRRVLGVITLQQAEMR 142 Query: 131 RFTDEDEQGLRQLVAQLEKVLATTD 155 RF++++E L L AQL + D Sbjct: 143 RFSEDEEAFLVTLAAQLALEITNAD 167 >UniRef50_A3UA31 Sensor protein n=1 Tax=Croceibacter atlanticus HTCC2559 RepID=A3UA31_9FLAO Length = 952 Score = 53.3 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 54/160 (33%), Gaps = 18/160 (11%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---GPFQ 61 E ++ + + LA N + L YL+ ++ + F+ Sbjct: 561 ETLNNVAKSILGKVNINEIALAISKNITKYLGSTD-----CAIYLVNENENGISKIAAFE 615 Query: 62 GKIACVRIPVGR-------GVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV 114 ++ + + + G A + +E+ H NS +++P++ Sbjct: 616 SELKESALTNNKDKLVNDGALIGQVAASGKPIIVEN---NAEHTINTTFENSRLIVPIIN 672 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +IG++D T FT++ L+ + + L Sbjct: 673 DGNVIGIIDSVHTDQNYFTNDHLSTLQNVARLVSLQLKNA 712 >UniRef50_A4VD13 Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=A4VD13_TETTH Length = 319 Score = 52.9 bits (126), Expect = 4e-06, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 70/178 (39%), Gaps = 38/178 (21%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 MN +E + L+ + ++++ + S + L + +++ W Sbjct: 1 MNISEVFDALSNECISILSCDKSSI--------FLLDEKSNLFWT--------------K 38 Query: 61 QGKIACVRIPVGR-GVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVV 114 K +++ V + G CG Q + D H+ D + + + S + P+ Sbjct: 39 GNKNDMIKLSVDQSGFCGHVAQTGQTINVLDAHLDDRFDKQLDLKNNYRTKSVLCAPIFD 98 Query: 115 ---KNQIIGVLDIDSTVFG--RFTDEDEQGLRQLVAQLEKVLATTDYK----KFFASV 163 N+++GVL + + FT +DE L+ + E +L + + +F+ S+ Sbjct: 99 TKSSNRVMGVLQV-TNKLNQSFFTKDDEGILKVIAMLSENILKNSVFNDERAEFYNSL 155 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YE... 185 3e-46 UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms R... 182 5e-45 UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q... 167 1e-40 UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonad... 167 1e-40 UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1... 165 6e-40 UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales Re... 161 7e-39 UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG... 160 1e-38 UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria ... 159 3e-38 UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli R... 158 5e-38 UniRef50_A6L6E7 GAF domain-containing protein involved in signal... 156 2e-37 UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria... 156 2e-37 UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwell... 156 3e-37 UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC ... 155 4e-37 UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellula... 155 4e-37 UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10... 155 6e-37 UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9P... 153 2e-36 UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_L... 153 2e-36 UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobac... 153 2e-36 UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridiu... 152 3e-36 UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellov... 151 6e-36 UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria ... 151 1e-35 UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=... 151 1e-35 UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobili... 150 1e-35 UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptoco... 150 1e-35 UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdema... 150 2e-35 UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6... 150 2e-35 UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostr... 149 3e-35 UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 148 5e-35 UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B... 147 1e-34 UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium pa... 147 1e-34 UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga l... 147 1e-34 UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured... 147 2e-34 UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria Rep... 146 3e-34 UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idio... 146 3e-34 UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoan... 145 4e-34 UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extr... 145 7e-34 UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria R... 145 7e-34 UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacter... 145 8e-34 UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DS... 143 2e-33 UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=L... 143 3e-33 UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaprot... 142 3e-33 UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodob... 141 5e-33 UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycopla... 141 6e-33 UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobact... 141 1e-32 UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteri... 140 1e-32 UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4... 140 1e-32 UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacte... 140 1e-32 UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri D... 140 2e-32 UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus... 140 2e-32 UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms Re... 139 3e-32 UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q75... 138 5e-32 UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mo... 138 5e-32 UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobaci... 138 5e-32 UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=... 138 6e-32 UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepI... 138 9e-32 UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellula... 137 1e-31 UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax... 135 4e-31 UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX... 135 6e-31 UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishma... 135 6e-31 UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistip... 134 9e-31 UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptonip... 133 1e-30 UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2... 133 2e-30 UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypano... 133 2e-30 UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobas... 133 3e-30 UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga ol... 132 3e-30 UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Aj... 132 4e-30 UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholep... 131 8e-30 UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nod... 131 9e-30 UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobact... 131 1e-29 UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus K... 130 1e-29 UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulf... 130 1e-29 UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroh... 128 6e-29 UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermos... 128 1e-28 UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerot... 127 1e-28 UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytoph... 124 1e-27 UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum K... 122 4e-27 UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 T... 122 5e-27 UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 ... 121 7e-27 UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesente... 120 2e-26 UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q... 119 3e-26 UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase ... 118 6e-26 UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxyd... 117 1e-25 UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=... 114 1e-24 UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 113 2e-24 UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S)... 113 2e-24 UniRef50_A8UPH1 Putative orphan protein ; putative GGDEF protein... 112 4e-24 UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphoh... 111 1e-23 UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Rose... 110 2e-23 UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacter... 109 3e-23 UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter... 108 7e-23 UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermopla... 108 9e-23 UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyad... 106 2e-22 UniRef50_B3E1R0 Diguanylate cyclase with GAF sensor n=1 Tax=Geob... 106 3e-22 UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus... 106 4e-22 UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF s... 105 7e-22 UniRef50_Q1K0H7 Sensor protein n=1 Tax=Desulfuromonas acetoxidan... 104 9e-22 UniRef50_A0LL31 Serine phosphatase n=1 Tax=Syntrophobacter fumar... 104 9e-22 UniRef50_B8G854 Sensor protein n=3 Tax=Chloroflexus RepID=B8G854... 104 1e-21 UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome... 104 1e-21 UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacter... 103 3e-21 UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=M... 103 3e-21 UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 103 3e-21 UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9... 102 5e-21 UniRef50_Q1PXD5 Putative uncharacterized protein n=1 Tax=Candida... 101 8e-21 UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=... 101 8e-21 UniRef50_B8GBU0 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBU0... 101 9e-21 UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Ta... 101 1e-20 UniRef50_Q1VT20 Sensor protein n=2 Tax=Flavobacteriaceae RepID=Q... 101 1e-20 UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepI... 100 1e-20 UniRef50_B5YCA4 Ggdef domain/hd domain protein n=2 Tax=Dictyoglo... 100 2e-20 UniRef50_Q1IKE0 Diguanylate cyclase with GAF sensor n=1 Tax=Cand... 100 2e-20 UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilag... 99 3e-20 UniRef50_A8UJB8 Sensor protein n=2 Tax=Flavobacteriales RepID=A8... 100 3e-20 UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxoba... 100 3e-20 UniRef50_A6LSE0 Diguanylate cyclase n=1 Tax=Clostridium beijerin... 98 6e-20 UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 98 8e-20 UniRef50_A7NNT0 Sensor protein n=2 Tax=Roseiflexus RepID=A7NNT0_... 98 1e-19 UniRef50_D1C7L1 Diguanylate cyclase and metal dependent phosphoh... 98 1e-19 UniRef50_Q1VQE8 Sensor protein n=1 Tax=Psychroflexus torquis ATC... 98 1e-19 UniRef50_Q3IKM7 Putative orphan protein ; putative GGDEF protein... 97 2e-19 UniRef50_A3JMI9 Sensor protein n=1 Tax=Rhodobacterales bacterium... 97 2e-19 UniRef50_B5YIS1 Hamp domain/gaf domain/hd domain protein n=1 Tax... 97 2e-19 UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase ... 96 2e-19 UniRef50_D0E8I3 Sensor protein n=1 Tax=uncultured bacterium HF13... 96 3e-19 UniRef50_A2EIP4 3'5'-cyclic nucleotide phosphodiesterase family ... 96 4e-19 UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID... 96 5e-19 UniRef50_B3E3E2 Metal dependent phosphohydrolase n=2 Tax=Geobact... 95 6e-19 UniRef50_C0QQ26 Metal dependent phosphohydrolase n=3 Tax=Bacteri... 95 7e-19 UniRef50_A2SP17 Transcriptional regulator, CdaR family n=1 Tax=M... 95 1e-18 UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellom... 94 1e-18 UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis F... 94 1e-18 UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 T... 94 1e-18 UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein... 94 2e-18 UniRef50_A2U1J4 Sensor protein n=1 Tax=Polaribacter sp. MED152 R... 94 2e-18 UniRef50_Q1K190 PTSINtr with GAF domain, PtsP n=1 Tax=Desulfurom... 94 2e-18 UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S)... 93 2e-18 UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S)... 93 2e-18 UniRef50_C5D1A1 Sensor protein n=1 Tax=Variovorax paradoxus S110... 93 2e-18 UniRef50_B8E2Z6 Metal dependent phosphohydrolase n=1 Tax=Dictyog... 93 2e-18 UniRef50_B1ZF40 Signal transduction histidine kinase n=1 Tax=Met... 93 3e-18 UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subu... 93 4e-18 UniRef50_A3EWI4 Putative GAF sensor protein n=3 Tax=Leptospirill... 93 4e-18 UniRef50_B5JLN9 Sensor protein n=1 Tax=Verrucomicrobiae bacteriu... 93 4e-18 UniRef50_A9FGA1 Sensor protein n=1 Tax=Sorangium cellulosum 'So ... 92 5e-18 UniRef50_Q01Y41 Putative GAF sensor protein n=1 Tax=Candidatus S... 92 5e-18 UniRef50_C9R7N3 Metal dependent phosphohydrolase n=1 Tax=Ammonif... 92 5e-18 UniRef50_D0LGB0 Sensor protein n=1 Tax=Haliangium ochraceum DSM ... 92 5e-18 UniRef50_B3E4M8 Putative GAF sensor protein n=1 Tax=Geobacter lo... 92 5e-18 UniRef50_B0WPM1 cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosph... 92 6e-18 UniRef50_D1CEK7 Diguanylate cyclase/phosphodiesterase with PAS/P... 92 6e-18 UniRef50_A2E5S0 GAF domain containing protein n=1 Tax=Trichomona... 92 6e-18 UniRef50_B8G9Y3 Adenylate/guanylate cyclase with GAF sensor(S) n... 92 6e-18 UniRef50_A9KD89 GGDEF family protein n=6 Tax=Coxiella burnetii R... 92 7e-18 UniRef50_A2DG30 3'5'-cyclic nucleotide phosphodiesterase family ... 92 7e-18 UniRef50_D1C2G1 Signal transduction histidine kinase n=1 Tax=Sph... 92 7e-18 UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter... 92 7e-18 UniRef50_A3WDP1 Adenylate/Guanylate Cyclase n=1 Tax=Erythrobacte... 92 7e-18 UniRef50_Q74E48 Conserved domain protein n=4 Tax=Geobacter RepID... 91 8e-18 UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geob... 91 8e-18 UniRef50_C1F1G0 GGDEF domain protein n=1 Tax=Acidobacterium caps... 91 9e-18 UniRef50_A9B7C8 GAF sensor signal transduction histidine kinase ... 91 9e-18 UniRef50_Q5SJL9 GGDEF domain protein n=4 Tax=Thermaceae RepID=Q5... 91 1e-17 UniRef50_Q24GJ8 GAF domain containing protein n=1 Tax=Tetrahymen... 91 1e-17 UniRef50_O27644 Sensory transduction regulatory protein n=1 Tax=... 91 1e-17 UniRef50_B4D6Y4 Protein serine phosphatase with GAF(S) sensor(S)... 91 1e-17 UniRef50_A9AVU3 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 91 1e-17 UniRef50_C7RAL6 Diguanylate cyclase/phosphodiesterase with PAS/P... 91 1e-17 UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fi... 90 2e-17 UniRef50_Q2SHY3 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCT... 90 2e-17 UniRef50_A7HTY0 PTSINtr with GAF domain, PtsP n=5 Tax=Alphaprote... 90 2e-17 UniRef50_Q1NJC2 GAF n=3 Tax=Deltaproteobacteria RepID=Q1NJC2_9DELT 90 2e-17 UniRef50_B9LIX5 Sensor protein n=4 Tax=Chloroflexus RepID=B9LIX5... 90 3e-17 UniRef50_A5UQK5 Sensor protein n=2 Tax=Roseiflexus RepID=A5UQK5_... 90 3e-17 UniRef50_Q23PX5 GAF domain containing protein n=1 Tax=Tetrahymen... 90 3e-17 UniRef50_Q04NN0 Serine phosphatase RsbU, regulator of sigma subu... 90 3e-17 UniRef50_UPI00019273C0 PREDICTED: similar to predicted protein n... 90 3e-17 UniRef50_A2EHB3 3'5'-cyclic nucleotide phosphodiesterase family ... 90 4e-17 UniRef50_A5D1X2 Putative uncharacterized protein n=1 Tax=Pelotom... 89 4e-17 UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase ... 89 4e-17 UniRef50_A4J938 Metal dependent phosphohydrolase n=1 Tax=Desulfo... 89 5e-17 UniRef50_A9WCV4 GAF domain protein n=6 Tax=Chloroflexi (class) R... 89 5e-17 UniRef50_C9RIM5 Metal dependent phosphohydrolase n=1 Tax=Fibroba... 89 5e-17 UniRef50_B8G3P3 Sensor protein n=4 Tax=Chloroflexaceae RepID=B8G... 89 6e-17 UniRef50_A2FQ29 3'5'-cyclic nucleotide phosphodiesterase family ... 89 6e-17 UniRef50_B5W0S0 Adenylate/guanylate cyclase with TPR repeats n=4... 89 6e-17 UniRef50_A1R1B6 ANTAR domain protein n=2 Tax=Arthrobacter RepID=... 88 7e-17 UniRef50_B9KXS9 Probable two component sensor kinase n=1 Tax=The... 88 7e-17 UniRef50_A9B249 Protein serine phosphatase with GAF(S) sensor(S)... 88 8e-17 UniRef50_Q0C4J5 Phosphoenolpyruvate-protein phosphotransferase P... 88 8e-17 UniRef50_C0QF51 Pdp n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 88 9e-17 UniRef50_B1ZYQ1 Sensor protein n=2 Tax=Opitutaceae RepID=B1ZYQ1_... 88 1e-16 UniRef50_C6N2Z1 Adenylate/Guanylate Cyclase n=2 Tax=Legionella R... 88 1e-16 UniRef50_A2ERL4 3'5'-cyclic nucleotide phosphodiesterase family ... 88 1e-16 UniRef50_A3VUX2 Phosphoenolpyruvate-protein phosphotransferase n... 88 1e-16 UniRef50_B0V4K0 Phosphoenolpyruvate-protein phosphotransferase n... 88 1e-16 UniRef50_A9AXC8 Diguanylate cyclase n=1 Tax=Herpetosiphon aurant... 88 1e-16 UniRef50_A2F408 3'5'-cyclic nucleotide phosphodiesterase family ... 88 1e-16 UniRef50_Q04QN3 Serine phosphatase RsbU, regulator of sigma subu... 88 1e-16 UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1... 87 2e-16 UniRef50_A0LGQ1 Putative PAS/PAC sensor protein n=1 Tax=Syntroph... 87 2e-16 UniRef50_Q0YQY7 Sensor protein n=1 Tax=Chlorobium ferrooxidans D... 87 2e-16 UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 ... 87 2e-16 UniRef50_Q3IDN4 Phosphoenolpyruvate-protein phosphotransferase p... 87 2e-16 UniRef50_B1I6C3 Diguanylate cyclase n=1 Tax=Candidatus Desulforu... 86 3e-16 UniRef50_B0S995 Serine phosphatase RsbU, regulator of sigma subu... 86 3e-16 UniRef50_B1I2V9 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=... 86 3e-16 UniRef50_D1B6W8 Diguanylate cyclase with GAF sensor n=1 Tax=Ther... 86 3e-16 UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis F... 86 4e-16 UniRef50_C6MUF5 Diguanylate cyclase with GAF sensor n=1 Tax=Geob... 86 4e-16 UniRef50_Q7UNP2 Probable sensor kinase n=2 Tax=Planctomycetaceae... 86 4e-16 UniRef50_Q72KR9 Sensory transduction histidine kinase n=1 Tax=Th... 86 4e-16 UniRef50_Q119F8 Adenylate/guanylate cyclase n=7 Tax=Cyanobacteri... 86 5e-16 UniRef50_B4RZF3 Phosphoenolpyruvate-protein phosphotransferase P... 86 5e-16 UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fi... 86 5e-16 UniRef50_A8ZTC5 Sensor protein n=1 Tax=Desulfococcus oleovorans ... 86 5e-16 UniRef50_D2L393 Protein serine phosphatase with GAF(S) sensor(S)... 86 5e-16 UniRef50_B4UII9 Diguanylate cyclase n=3 Tax=Anaeromyxobacter Rep... 86 5e-16 UniRef50_A1HRZ7 Diguanylate cyclase n=1 Tax=Thermosinus carboxyd... 85 6e-16 UniRef50_C6LID7 Putative GAF domain protein n=1 Tax=Bryantella f... 85 6e-16 UniRef50_C1XIF1 Diguanylate cyclase (GGDEF) domain-containing pr... 85 6e-16 UniRef50_D0NI43 Putative uncharacterized protein n=1 Tax=Phytoph... 85 6e-16 UniRef50_C8S7I7 Putative PAS/PAC sensor protein n=1 Tax=Ferroglo... 85 6e-16 UniRef50_C8XKF3 Putative transcriptional regulator, PucR family ... 85 6e-16 UniRef50_C1F5V2 Putative sensory transcriptional regulator n=1 T... 85 6e-16 UniRef50_Q0BUK2 Phosphoenolpyruvate-protein phosphotransferase n... 85 7e-16 UniRef50_Q04VG8 Response regulator with GGDEF domain n=4 Tax=Lep... 85 8e-16 UniRef50_A4J4M7 Sensor protein n=1 Tax=Desulfotomaculum reducens... 85 9e-16 UniRef50_C3Y1E6 Putative uncharacterized protein n=1 Tax=Branchi... 85 1e-15 UniRef50_A2ENJ2 3'5'-cyclic nucleotide phosphodiesterase family ... 85 1e-15 UniRef50_Q3JEL0 Protein phosphatase 2C-like, stage II sporulatio... 84 1e-15 UniRef50_B5YEI3 Metal dependent phosphohydrolase n=1 Tax=Dictyog... 84 1e-15 UniRef50_B0SAB0 Transcriptional regulator n=2 Tax=Leptospira bif... 84 1e-15 UniRef50_A2SNX8 Transcriptional regulator, CdaR family n=1 Tax=M... 84 2e-15 UniRef50_A2G2M9 3'5'-cyclic nucleotide phosphodiesterase family ... 84 2e-15 UniRef50_C1V4X1 GAF domain-containing protein n=1 Tax=Halogeomet... 84 2e-15 UniRef50_A7I8H7 Sensor protein n=1 Tax=Candidatus Methanoregula ... 84 2e-15 UniRef50_B5JVZ7 Phosphoenolpyruvate-protein phosphotransferase n... 84 2e-15 UniRef50_Q9Y233 cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosph... 84 2e-15 UniRef50_D1C657 GAF sensor signal transduction histidine kinase ... 84 2e-15 UniRef50_A9B7Z7 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 83 2e-15 UniRef50_A8QAS5 Probable 3',5'-cyclic phosphodiesterase C32E12.2... 83 2e-15 Sequences not found previously or not previously below threshold: UniRef50_A2DF08 3'5'-cyclic nucleotide phosphodiesterase family ... 91 2e-17 UniRef50_A2FK96 GAF domain containing protein n=3 Tax=Trichomona... 87 2e-16 UniRef50_UPI00016C5412 sensor protein atoS n=1 Tax=Gemmata obscu... 85 7e-16 UniRef50_B8G7Y2 Protein serine phosphatase with GAF(S) sensor(S)... 85 8e-16 UniRef50_A2DJF3 3'5'-cyclic nucleotide phosphodiesterase family ... 85 9e-16 UniRef50_B5YD58 Sensor protein n=2 Tax=Dictyoglomus RepID=B5YD58... 85 1e-15 UniRef50_UPI0000588CD9 PREDICTED: hypothetical protein n=1 Tax=S... 84 1e-15 UniRef50_D1C9S7 Serine/threonine protein kinase n=1 Tax=Sphaerob... 84 2e-15 UniRef50_Q09E49 Adenylate cyclase 2 n=2 Tax=Myxococcales RepID=Q... 84 2e-15 >UniRef50_P76270 UPF0067 protein yebR n=328 Tax=Bacteria RepID=YEBR_ECOLI Length = 165 Score = 185 bits (471), Expect = 3e-46, Method: Composition-based stats. Identities = 165/165 (100%), Positives = 165/165 (100%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF Sbjct: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG Sbjct: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG Sbjct: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 >UniRef50_B4SV86 GAF domain protein n=53 Tax=cellular organisms RepID=B4SV86_SALNS Length = 165 Score = 182 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 139/165 (84%), Positives = 152/165 (92%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M+KTE YA LNRDF +LMAGETSFLATLANTSALL+ERLT++NWAGFYLLE DTLVLGPF Sbjct: 1 MSKTELYAALNRDFQSLMAGETSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPF 60 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG+IACVRIPVGRGVCG AVA+N+VQRI+DVH FDGHIACDAASN+EIVLP+ V +IIG Sbjct: 61 QGRIACVRIPVGRGVCGAAVAQNKVQRIDDVHAFDGHIACDAASNAEIVLPVTVGERIIG 120 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 VLDIDST FGRFT+EDE GLR LVAQLE VLATTDYKKFFASVAG Sbjct: 121 VLDIDSTAFGRFTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG 165 >UniRef50_Q65G44 Conserved protein YtsP n=38 Tax=Bacteria RepID=Q65G44_BACLD Length = 164 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 83/151 (54%), Positives = 104/151 (68%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + Y L + +AL GE +A AN SALLY+ L D+NWAGFY +D LVLGPFQ Sbjct: 10 SKEKKYELLLKQIDALTEGEPDMIANTANASALLYQSLEDVNWAGFYFAKDGELVLGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G ACVRIP G+GVCGTA +V+R+EDV+ F GHIACDAAS SEIV+PL V IIGV Sbjct: 70 GLPACVRIPFGKGVCGTAYTNGRVERVEDVNAFPGHIACDAASQSEIVVPLEVDGSIIGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 LDIDS + RF + DE L++ +L + L+ Sbjct: 130 LDIDSPIKNRFDETDEYYLKKFTEKLGERLS 160 >UniRef50_Q2GC44 Putative GAF sensor protein n=2 Tax=Sphingomonadales RepID=Q2GC44_NOVAD Length = 160 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 100/150 (66%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 ++ E +ADL AL GE +A +AN +AL+++ L D+NWAGFY + + LVLGPF Sbjct: 11 SRAELHADLLEAARALTDGEPDGVANMANVAALIWQFLPDLNWAGFYRMVEGELVLGPFV 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK AC+RIP+G+GVCGTA A + Q + DVH F GHIACDAAS SE+V+P++ +I V Sbjct: 71 GKPACIRIPLGKGVCGTAAASGETQLVADVHAFPGHIACDAASRSELVVPVLRDGGVIAV 130 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +D+DS RF +ED +G+ L + + Sbjct: 131 IDLDSPSPSRFDEEDARGIEALARAMAHRI 160 >UniRef50_C2C1J5 GAF domain protein n=2 Tax=Firmicutes RepID=C2C1J5_LISGR Length = 167 Score = 165 bits (417), Expect = 6e-40, Method: Composition-based stats. Identities = 77/148 (52%), Positives = 105/148 (70%), Gaps = 2/148 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGP 59 +K E Y+ + A++ GETS +A L+N SALL + L +INW GFYL E+ D LVLGP Sbjct: 15 SKEENYSLCAKQIKAMIDGETSLIANLSNVSALLNQALENINWVGFYLYEESSDQLVLGP 74 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC+RIP+G+GVCG+A A +EDV+ F GHIACDAAS SEIV+P+ +++++I Sbjct: 75 FQGLPACIRIPLGKGVCGSAAAEQSTYLVEDVNAFPGHIACDAASRSEIVVPITIEDELI 134 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 GVLDIDS GRF + D++ L Q+ + Sbjct: 135 GVLDIDSPEVGRFDEVDQKWLEQIRDII 162 >UniRef50_Q4L759 Similar to unknown protein n=2 Tax=Bacillales RepID=Q4L759_STAHJ Length = 155 Score = 161 bits (408), Expect = 7e-39, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 108/149 (72%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y L + +L+ E + +A L+NTSA+L + L INW GFYL+E++ L+LGPFQG Sbjct: 5 KETNYNLLTKQLQSLIEDEQNLIAILSNTSAILNDNLDQINWVGFYLIENEELILGPFQG 64 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ACV I +G+GVCGTAVA ++ Q ++DVH F GHIACDA S SEIV+P+ V ++IIGVL Sbjct: 65 HPACVHIAIGKGVCGTAVAEDKTQLVKDVHAFPGHIACDANSKSEIVIPIHVNDEIIGVL 124 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 DID+ + RFT+ED++GL +V +EK L Sbjct: 125 DIDAPITDRFTNEDKEGLEVIVKVIEKQL 153 >UniRef50_C4KRG8 GAF domain protein n=58 Tax=Bacteria RepID=C4KRG8_BURPS Length = 202 Score = 160 bits (405), Expect = 1e-38, Method: Composition-based stats. Identities = 74/155 (47%), Positives = 93/155 (60%), Gaps = 2/155 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y L AL+ ET +A AN ++L+Y L +NWAGFY + LV+GPFQ Sbjct: 43 SKPALYETLAAQARALVETETDIVANAANFASLVYHSLDGLNWAGFYFFDGRELVVGPFQ 102 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK ACVRIP+G+GVCGTA Q + DVH F GHIACD+AS SEIV+PLV +IG Sbjct: 103 GKPACVRIPLGKGVCGTAAQTRGTQVVHDVHAFAGHIACDSASQSEIVVPLVARDGALIG 162 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQ-LEKVLATT 154 V D+DS + GRF ED G+ L +E Sbjct: 163 VWDVDSPLVGRFDAEDATGMEALCRVFVEVAWENA 197 >UniRef50_A9ADC3 GAF domain-containing protein n=62 Tax=Bacteria RepID=A9ADC3_BURM1 Length = 167 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 76/144 (52%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K + YA L AL+ E +A AN SAL+Y L +NWAGFY + LV+GPFQ Sbjct: 11 SKADQYATLVEQARALVESERDLIANAANFSALVYHSLDRLNWAGFYFFDGTELVVGPFQ 70 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK ACVRI +G+GVCGTA + Q + DVH F GHIACDAAS SEIV+PLV +IG Sbjct: 71 GKPACVRIALGKGVCGTAAQTRETQVVRDVHAFPGHIACDAASESEIVVPLVADDGTLIG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLV 144 V D+DS V RF DED +G+ L Sbjct: 131 VWDVDSPVAARFDDEDRRGMEALC 154 >UniRef50_Q04F13 GAF domain-containing protein n=20 Tax=Bacilli RepID=Q04F13_OENOB Length = 174 Score = 158 bits (401), Expect = 5e-38, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 93/146 (63%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K Y+ LN +L+ GE +A ++N +L++ +IN +Y L++ L+LGPFQ Sbjct: 26 TKQTRYSLLNDQAQSLLDGEHDLIANMSNLVSLIFNSDQNINGTTYYRLKNGELILGPFQ 85 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK ACV IP+GRGVCGTA A + + +VH F+GHIACD SNSEIV+P+ KN+ GV Sbjct: 86 GKPACVHIPLGRGVCGTAAALKKTVIVSNVHKFEGHIACDKDSNSEIVVPIFSKNEFWGV 145 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+DST F F D++ L ++ + Sbjct: 146 LDLDSTKFNYFDKNDQEYLEKIGNYI 171 >UniRef50_A6L6E7 GAF domain-containing protein involved in signal transduction n=7 Tax=Bacteroidales RepID=A6L6E7_BACV8 Length = 161 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 NK E Y F L++ E ++ LANT+A L E W GFYL++DD L+LGPFQ Sbjct: 11 NKVERYRLFLPQFELLISDEKEEISVLANTAAALREAFG-FFWVGFYLVKDDQLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI G+GVCGT+ A + + +V F GHIAC + S SEIV+P++ Q+ GV Sbjct: 70 GSTACYRIHKGKGVCGTSWAEARTLIVPNVEQFPGHIACSSLSRSEIVVPILANGQVKGV 129 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS + F + D + L ++ A + K L Sbjct: 130 LDIDSNLLNFFDETDRRYLEEVTAIVAKTL 159 >UniRef50_C6S529 GAF-domain containing protein n=26 Tax=Neisseria RepID=C6S529_NEIML Length = 167 Score = 156 bits (395), Expect = 2e-37, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 90/158 (56%), Gaps = 3/158 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 +K Y ++ +++A ET +++ LANT+A+L E W GFYL++ D LVL P Sbjct: 10 DKAALYREVLPQIESVVADETDWVSNLANTAAVLKEAFG-WFWVGFYLVDTRSDELVLAP 68 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +AC RIP GRGVCG A A+ + DV+ + HIAC + S SEIV+PL + I Sbjct: 69 FQGPLACTRIPFGRGVCGQAWAKGGTVVVGDVNAYPDHIACSSLSRSEIVVPLFSDGRCI 128 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 GVLD DS +F + D L +L LEK + Sbjct: 129 GVLDADSEHLAQFDETDALYLGELAKILEKRFEASRQA 166 >UniRef50_Q480J4 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q480J4_COLP3 Length = 158 Score = 156 bits (394), Expect = 3e-37, Method: Composition-based stats. Identities = 87/156 (55%), Positives = 112/156 (71%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 N+ EFY +L AL+ E+ +A +AN SALL+ERL D+NW GFY L D LVLGPFQ Sbjct: 3 NQAEFYHELLGQTKALINDESDIIANMANISALLFERLADVNWVGFYRLIDGELVLGPFQ 62 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK+AC+RIPVG+GVCGT +VQRI DVH FDGHIACDA+SN+E+V+P+ + ++I + Sbjct: 63 GKVACIRIPVGKGVCGTCSFTGEVQRISDVHQFDGHIACDASSNAELVVPVKIAGKVIAI 122 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 LDIDSTVF RF EDEQG+ +V E+ + D Sbjct: 123 LDIDSTVFDRFNLEDEQGIVSIVQAFEQNITAMDNA 158 >UniRef50_B9CNA2 GAF domain protein n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CNA2_9ACTN Length = 163 Score = 155 bits (393), Expect = 4e-37, Method: Composition-based stats. Identities = 82/160 (51%), Positives = 103/160 (64%), Gaps = 7/160 (4%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-------TLVLGP 59 Y L + L + +L LANT+ALL+ L DINWAGFYL++ D L LGP Sbjct: 4 YTLLAQQIEELAEIDAHWLPVLANTAALLWGALEDINWAGFYLMDSDTGSDGVPELRLGP 63 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG +ACVRIP G+GVCGTA + Q +EDVH F GHIACDAASNSE+V+PL VK ++ Sbjct: 64 FQGNVACVRIPFGKGVCGTAAETEKSQLVEDVHKFPGHIACDAASNSEVVVPLKVKGSVV 123 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 GVLDIDS GRF +ED GL + ++E+V+ K Sbjct: 124 GVLDIDSPTRGRFGEEDLLGLEAVARKIEQVVEFEQSTKR 163 >UniRef50_Q8MTJ7 GAF domain-containing protein A n=40 Tax=cellular organisms RepID=GAFA_DICDI Length = 158 Score = 155 bits (392), Expect = 4e-37, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPF 60 +K E Y +L L+ GE + +A LAN +A L E+ + W GFYL++ ++ LVL PF Sbjct: 11 SKEEQYENLLPQIEGLLTGENNQIANLANVTAALKEQF-NFFWVGFYLVDTENELVLAPF 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG IAC RI GRGVCGTA + + + DV F GHIAC + S SEIVLPL + IIG Sbjct: 70 QGPIACTRIRKGRGVCGTAWQQEKTLIVPDVEKFPGHIACSSLSKSEIVLPLYKQGNIIG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLD+DS F + DE+ L Q++ L Sbjct: 130 VLDVDSDKLNSFDEIDEKYLTQILKLL 156 >UniRef50_C5NYH8 Protein YebR n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NYH8_9BACL Length = 155 Score = 155 bits (391), Expect = 6e-37, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLG 58 MN E AL++GE + + L+N SAL E L + NW GFYLL++ + LVLG Sbjct: 1 MNIVENKELFISQATALVSGEENLVTNLSNLSALYKEYLPNTNWVGFYLLDEKNNNLVLG 60 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 PFQGK+AC RIP +GVCG + +EDVH F GHIACD+A+NSE+V+P++ +++ Sbjct: 61 PFQGKVACTRIPFNKGVCGHCYTTRETIYVEDVHKFPGHIACDSATNSELVVPIIQNDKV 120 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + +LDIDS F RF+ E+ + ++ Q+ Sbjct: 121 VALLDIDSIEFDRFSKEEVEAFSEVTKQV 149 >UniRef50_C9PMB7 GAF domain protein n=2 Tax=Pasteurella RepID=C9PMB7_9PAST Length = 143 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 62/141 (43%), Positives = 90/141 (63%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC 66 Y+ L + ++ ET ++ +ANTSA +YE + D+NW GFY+++D L +GPFQGK+AC Sbjct: 3 YSLLLKQLEQILETETYIISRMANTSAFIYEHMPDLNWVGFYIVKDGVLKVGPFQGKVAC 62 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 I G+GVCG +EDVH FDGHIACD+AS SE+V+P+ ++I LD+DS Sbjct: 63 SDIGFGKGVCGYTWKTGTTTVVEDVHQFDGHIACDSASQSEVVVPIFKDGEMIAELDVDS 122 Query: 127 TVFGRFTDEDEQGLRQLVAQL 147 RF+ ED + L + A + Sbjct: 123 PRLARFSAEDVEFLEKCAALI 143 >UniRef50_A0AJ44 Complete genome n=34 Tax=Bacteria RepID=A0AJ44_LISW6 Length = 166 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 106/154 (68%), Gaps = 2/154 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 K E YA + A++AGE + +A L+N S++L + L+DINW GFYLLE +T LVLGP Sbjct: 10 TKEENYALAFKQVQAMIAGEPNLIANLSNVSSILNQALSDINWVGFYLLEKETNQLVLGP 69 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC+RIP+G+GVCG+A + + +E+VH F GHIACDAASNSEIVLP+V Q++ Sbjct: 70 FQGLPACIRIPLGKGVCGSAASEEKTYIVENVHDFPGHIACDAASNSEIVLPIVKNEQLL 129 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 GVLDIDS +F RF D+ L ++ + L Sbjct: 130 GVLDIDSPLFNRFDKVDQMWLEKIRDAITLELPN 163 >UniRef50_C5WHK6 GAF domain-containing proteins n=76 Tax=Lactobacillales RepID=C5WHK6_STRDG Length = 176 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 59/144 (40%), Positives = 88/144 (61%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E Y L L A ET+ LA L+N SALL L + +AGFYL + L+LGPFQG Sbjct: 17 KIEQYQLLLAQAQGLFANETNALANLSNASALLKMTLPNSVFAGFYLFDGQELILGPFQG 76 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ++CV I +G+GVCG + + ++DV +I+CDAA+ SEIV+P+V + ++GVL Sbjct: 77 GVSCVHIKLGKGVCGESAQSRRTIIVDDVKQHANYISCDAAAMSEIVVPMVKDDCLVGVL 136 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQ 146 D+DS++ + + D++ L V Sbjct: 137 DLDSSLVADYDEVDQEYLEAFVDL 160 >UniRef50_A6LWI6 GAF domain-containing protein n=2 Tax=Clostridium RepID=A6LWI6_CLOB8 Length = 167 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 1 MNKTEFYADLNRDFNALMAGETSF-LATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 M+ ++ L+ G+ + L N SAL+ + INW GFYL++++TLVLGP Sbjct: 10 MSTENKLDNMLIMLEGLIQGDEDSSITKLCNASALINSLIDRINWCGFYLVKNNTLVLGP 69 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 FQG AC +I +G+GVCG A + ++DVH F+GHIACDAASNSEIV+P++ + +I Sbjct: 70 FQGMPACTKIEIGKGVCGKAALEKETLLVKDVHNFEGHIACDAASNSEIVIPIIKEGNLI 129 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 GVLD+DS F RFT+ ++ L + V L K + D Sbjct: 130 GVLDLDSEEFERFTEVEKTYLEKAVVILSKYIEWND 165 >UniRef50_Q6MHM4 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MHM4_BDEBA Length = 165 Score = 151 bits (383), Expect = 6e-36, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 97/146 (66%), Gaps = 2/146 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+FY +L+ + L E + LAN SALL + L +INW GFYLL ++ L+L FQ Sbjct: 11 DKTKFYKELHSEAEGL--AEKEWFVNLANFSALLKQHLPEINWVGFYLLHNNELLLSSFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G AC RI +G+GVCGTA Q Q + DV F GHI CDAAS SEIV+PL+ +++GV Sbjct: 69 GLPACTRIAIGKGVCGTAAKTLQTQLVADVDQFPGHIVCDAASKSEIVVPLIHNGKLLGV 128 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+D+ V RF ED++GL+ LV L Sbjct: 129 LDVDAPVLNRFDSEDQKGLQGLVQIL 154 >UniRef50_B8GYQ4 GAF domain-containing protein n=15 Tax=Bacteria RepID=B8GYQ4_CAUCN Length = 164 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 4/146 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K YA++ + +++ GE + A +A +++L WAGFY+++ + LV+G Sbjct: 13 DKATRYAEVADEIASVLDGEPNLTARMATVASMLANSFDSYFWAGFYVVDPTKERELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQ 117 P+QG + C+RI GRGVCG A A Q Q + DVH F GHIACD S SEIV+P+ + Sbjct: 73 PYQGTLGCLRIAFGRGVCGAAAATGQTQLVPDVHAFPGHIACDGRSQSEIVVPVFDPDGR 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQL 143 +I V D+DS F + D+ L ++ Sbjct: 133 LIAVFDVDSDKPAAFDEIDQAWLEKI 158 >UniRef50_P36088 UPF0067 GAF domain-containing protein YKL069W n=21 Tax=Saccharomyceta RepID=YKG9_YEAST Length = 180 Score = 151 bits (381), Expect = 1e-35, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 94/155 (60%), Gaps = 8/155 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLT----DINWAGFYLL---EDD 53 +NK E L + L G+ +++ L+N S+L++ DINWAGFY+ E++ Sbjct: 19 LNKEEILEQLLLSYEGLSDGQVNWVCNLSNASSLIWHAYKSLAVDINWAGFYVTQASEEN 78 Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 TL+LGPFQGK+AC I G+GVCGTA + + Q + DV+ + GHIACD + SEIV+P++ Sbjct: 79 TLILGPFQGKVACQMIQFGKGVCGTAASTKETQIVPDVNKYPGHIACDGETKSEIVVPII 138 Query: 114 -VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + +GV+DID + F D++ L +L + Sbjct: 139 SNDGKTLGVIDIDCLDYEGFDHVDKEFLEKLAKLI 173 >UniRef50_O66116 UPF0067 protein ZMO0507 n=3 Tax=Zymomonas mobilis RepID=Y507_ZYMMO Length = 161 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K Y+DL L++ E +A +ANT+AL++ + D+NW GFY L+LGPFQ Sbjct: 10 SKKTLYSDLLTTLKELLSEEGDPIANMANTAALIWTYMPDLNWVGFYRAIRSYLILGPFQ 69 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQIIG 120 GK+ACV+IP GRGVCGTA A ++Q + DVH + HI+CD ++ SE+V+P+ +NQI+ Sbjct: 70 GKVACVKIPYGRGVCGTAAATGRIQCVRDVHTYPNHISCDPSAASELVIPIRGRQNQILA 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 V+D++S GRF ED +G +L+ L + L Sbjct: 130 VIDLESPTMGRFDAEDVEGCSRLMEVLGRFL 160 >UniRef50_B1IB31 GAF domain-containing protein n=35 Tax=Streptococcus RepID=B1IB31_STRPI Length = 165 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K Y LN + + L+ GET+ LA L+N SAL+ R + +AGFYL + LVLGPFQ Sbjct: 5 EKQSRYQMLNEELSFLLEGETNVLANLSNASALIKSRFPNTVFAGFYLFDGKELVLGPFQ 64 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 G ++C+RI +G+GVCG A + + DV + +I+CD+ + SEIV+P++ Q++GV Sbjct: 65 GGVSCIRIALGKGVCGEAAHFQETVIVGDVTTYLNYISCDSLAKSEIVVPMMKNGQLLGV 124 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+DS+ + D L Q VA L Sbjct: 125 LDLDSSEIEDYDAMDRDYLEQFVAIL 150 >UniRef50_B9Y9Q1 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y9Q1_9FIRM Length = 156 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 72/140 (51%), Positives = 98/140 (70%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVG 72 + AL +GET + LAN SAL+ + + INWAGFYL++ LVLGPFQGK AC I +G Sbjct: 15 NAKALCSGETDRICCLANLSALIMQSMPRINWAGFYLMKQGELVLGPFQGKPACTHIALG 74 Query: 73 RGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF 132 +GVCGTA +N+ + DVH F GHIACD AS SEIV+PLV +++++GVLDID+ + RF Sbjct: 75 KGVCGTAAQKNECLVVRDVHQFPGHIACDEASRSEIVVPLVYQSEVVGVLDIDAPIPDRF 134 Query: 133 TDEDEQGLRQLVAQLEKVLA 152 +E LR+L A + ++ A Sbjct: 135 GSVEEAVLRELGAWIGELFA 154 >UniRef50_Q6BNR6 DEHA2E19514p n=5 Tax=Saccharomyceta RepID=Q6BNR6_DEBHA Length = 176 Score = 150 bits (378), Expect = 2e-35, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 90/158 (56%), Gaps = 7/158 (4%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDI----NWAGFYLLED---DTL 55 K E + + AL +++A LAN S+LL+ + NW+GFY+L + D L Sbjct: 19 KEEILQSVVDSYEALSYDTRNWVANLANCSSLLWHAYHSMKINVNWSGFYVLNEPRTDEL 78 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK 115 +LGPFQGK+AC I G+GVCG A + + Q + +V+ + GHIACD + SEIV+P+V K Sbjct: 79 ILGPFQGKVACQIIKFGKGVCGNAASSAKTQLVPNVNEYPGHIACDGETQSEIVVPIVNK 138 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 Q++GVLDID F D D + L QL + Sbjct: 139 GQVVGVLDIDCLTLEGFDDIDVKYLEQLATLIGNTCDW 176 >UniRef50_A7GHC9 Putative uncharacterized protein n=10 Tax=Clostridium RepID=A7GHC9_CLOBL Length = 165 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 109/154 (70%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + + + Y ++ + GE +A L+N SA++ + ++NWAGFYL++D LVLGPF Sbjct: 10 LTEEQKYENMLLFLKGQLLGEKDVIANLSNASAIIMALIDNLNWAGFYLMKDGELVLGPF 69 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC RI +G+GVCG A++ Q+QR++DVH F+GHIACD+++NSE+V+P++ +++I+G Sbjct: 70 QGMPACDRIKIGKGVCGVAISSRQIQRVDDVHKFEGHIACDSSTNSELVVPIIKEDKILG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 LD+DS FGRFT+ +E+ ++ V L + + + Sbjct: 130 GLDLDSIEFGRFTELEEKYFKKFVQILVENIDWS 163 >UniRef50_Q4ZQD0 GAF n=16 Tax=Bacteria RepID=Q4ZQD0_PSEU2 Length = 160 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 78/136 (57%), Positives = 100/136 (73%), Gaps = 3/136 (2%) Query: 20 GETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTA 79 E F+A A SA LY +L D+NWAGFYL ++ LVLGPFQG+IACVRIP GRGVCG A Sbjct: 27 DERDFIANAAQFSAFLYTQLDDLNWAGFYLNRNEELVLGPFQGQIACVRIPFGRGVCGAA 86 Query: 80 VARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQG 139 Q QR++DVH F GHIACD+ASNSE+V+PL+ + ++IGVLD+DS GRF +ED+ G Sbjct: 87 AQSRQTQRVQDVHEFPGHIACDSASNSELVVPLIKEGRLIGVLDLDSPSVGRFNEEDQAG 146 Query: 140 LRQLVAQLEKVLATTD 155 + +L + LA+TD Sbjct: 147 IERL---VAIFLASTD 159 >UniRef50_B6HFF9 Pc20g05770 protein n=18 Tax=Leotiomyceta RepID=B6HFF9_PENCW Length = 205 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 41/193 (21%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-------TDINWAGFYLLED-- 52 +K + Y L L+ G+ ++++ L+N ++LL+ + +NW GFY+ +D Sbjct: 13 SKADIYEQLLLSAQGLLDGQRNWVSNLSNVASLLWHAYASLPAPSSSVNWTGFYIRDDKF 72 Query: 53 --------------------------------DTLVLGPFQGKIACVRIPVGRGVCGTAV 80 L+LGPF GK AC I G+GVCGTA Sbjct: 73 PALASPVTSPPLPGAPGSGGVIISTTYSSSEDQLLLLGPFHGKPACQEIRFGKGVCGTAA 132 Query: 81 ARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGL 140 A+ + + DV F GHIACDA S SEIV+P++V + + ++DID T F DED++ L Sbjct: 133 AKQETVVVPDVLDFPGHIACDAESRSEIVVPILVNGETVAIIDIDCTEPSGFDDEDKKYL 192 Query: 141 RQLVAQLEKVLAT 153 +L L + Sbjct: 193 EKLATLLAEQCDW 205 >UniRef50_C8W841 Putative GAF sensor protein n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8W841_ATOPD Length = 176 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 81/172 (47%), Positives = 105/172 (61%), Gaps = 22/172 (12%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------------ 54 Y L + +L + +L L+N +ALL++ L DINWAGFYL++ T Sbjct: 4 YGLLAKQIISLAEVDAHWLPVLSNAAALLWDALDDINWAGFYLVDPATVAGVELGSGSGA 63 Query: 55 ----------LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS 104 L LGPFQGK+ACVRIP GRGVCGTA A Q +EDVH F GHIACD+AS Sbjct: 64 EPGLEPVSPDLRLGPFQGKVACVRIPFGRGVCGTAAATKTSQLVEDVHQFPGHIACDSAS 123 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 NSE+V+P+ +Q++GVLDIDS RFT ED GL ++V LE + +D+ Sbjct: 124 NSEVVVPIFEGDQVVGVLDIDSPSAARFTQEDLAGLERVVKALESCVDFSDF 175 >UniRef50_A8F3I2 Putative GAF sensor protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F3I2_THELT Length = 318 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 5/158 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K + + +L ++ + + ++ LLYE ++ NW GFYL + +TLVLG Sbjct: 162 SKKQLFEELTNQIEEII-FQNNIHESMEEICNLLYENISYYNWVGFYLTDFDEKNTLVLG 220 Query: 59 PFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQ 117 PF G+ V+IP G+G+CG A + ++DV +++C SEIV+P+++ Sbjct: 221 PFVGEPTEHVKIPFGKGICGQAAEKKTTFIVQDVSKETNYLSCSPKVKSEIVVPIMIDGI 280 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 I G LDIDS + F +DE L+ + ++ + + + Sbjct: 281 IYGELDIDSHISNAFDKDDELFLKNICDKISQKIRNEE 318 >UniRef50_D0E8J6 GAF domain-containing protein n=1 Tax=uncultured bacterium HF130_AEPn_1 RepID=D0E8J6_9BACT Length = 153 Score = 147 bits (371), Expect = 2e-34, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGP 59 MNK Y ++ +++A E + ++ S LL W GFY ++ L +GP Sbjct: 1 MNKESVYLEVEGQALSVLASEKDPIVIMSTLSCLLKNAFPHFYWVGFYRNIDGKNLKIGP 60 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-VKNQI 118 +QG + C+ I G+GVCG + + + DVH F GHIACD S SEIV+P ++ Sbjct: 61 YQGTLGCIDIAFGKGVCGASAQEGKTMVVPDVHEFPGHIACDPKSLSEIVVPWFKKDGEL 120 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + VLDIDST G F D + L +++A+L +L Sbjct: 121 LAVLDIDSTELGSFDLLDAEYLERMLAKLSDLL 153 >UniRef50_Q1QVQ4 Putative GAF sensor protein n=3 Tax=Bacteria RepID=Q1QVQ4_CHRSD Length = 155 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 85/145 (58%), Gaps = 2/145 (1%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGPFQGKIA 65 YA L R L+ +L A T A L + D+NWAGFYL + TL+LGPFQG A Sbjct: 4 YALLARQLETLLD-TRDWLTNTAQTCAFLMHEIPDLNWAGFYLQRQPGTLILGPFQGLPA 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 C IP +GVCG A QR+ DVH F GHIACDAAS SE+V+P+ ++ GVLD+D Sbjct: 63 CNPIPFDKGVCGAAATSRHTQRVADVHAFPGHIACDAASRSELVVPIECGAELWGVLDLD 122 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKV 150 S RF+D D+ G+ +LV Sbjct: 123 SPQPARFSDADQAGIERLVDVFVAA 147 >UniRef50_A3WPB2 Signaling protein with a GAF domain n=1 Tax=Idiomarina baltica OS145 RepID=A3WPB2_9GAMM Length = 156 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 73/142 (51%), Positives = 97/142 (68%), Gaps = 1/142 (0%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPFQGKIAC 66 D+ A+ +GE+ +A LAN SAL++++ DINWAGFYL + LVLGPFQGK+AC Sbjct: 8 DDIVTQCEAITSGESDLIANLANISALIFDQFEDINWAGFYLTRGERELVLGPFQGKVAC 67 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 VRIP G+GVCG A +Q + DVH F GHIACDAASN+E+V P++V + +GVLDIDS Sbjct: 68 VRIPFGQGVCGVAADSQALQHVHDVHEFSGHIACDAASNAEVVAPIIVDGKTVGVLDIDS 127 Query: 127 TVFGRFTDEDEQGLRQLVAQLE 148 GRF+ ED + ++ A Sbjct: 128 PTVGRFSAEDAEMFARIAAICA 149 >UniRef50_Q8R981 GAF domain-containing proteins n=10 Tax=Thermoanaerobacterales RepID=Q8R981_THETN Length = 156 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 52/153 (33%), Positives = 78/153 (50%), Gaps = 1/153 (0%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M K + + L + A T +L E + NW GFY ++D LV+GP+ Sbjct: 1 MEKQKVFERLIDEIKAKARDITDMDTFYKEVVRILSENVPYYNWTGFYFMKDGELVIGPY 60 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ VRI VG+GVCG AVA ++DV D ++AC + SEIV+P+ +II Sbjct: 61 IGRPTEHVRIKVGQGVCGRAVAEKSTIIVDDVTKEDNYLACSLETKSEIVVPIWANGEII 120 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 G +DIDS F D+D+ L ++ + + L Sbjct: 121 GEIDIDSDDLAAFDDKDKIFLEEVAKIIGRKLE 153 >UniRef50_D2MM74 GAF domain family protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MM74_9FIRM Length = 152 Score = 145 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 87/143 (60%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 + + ET F+A +N +A + + +INW GFY ++++ LVLGPFQGKIAC I Sbjct: 5 ILEQQTRSLLEETDFIAATSNLTAFMNQLFPNINWIGFYFVKNNELVLGPFQGKIACTHI 64 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P +G+CG ++ I DV HIACD+AS SE+ +P++ +N IG+LDID+ + Sbjct: 65 PFEKGICGRCYREKRLLNIPDVLSIQDHIACDSASRSELCIPILKENNCIGMLDIDAPIK 124 Query: 130 GRFTDEDEQGLRQLVAQLEKVLA 152 RFT EDE+ +V+ EK + Sbjct: 125 NRFTKEDEKKASLIVSLYEKAIQ 147 >UniRef50_Q0AMT4 GAF domain-containing protein n=6 Tax=Bacteria RepID=Q0AMT4_MARMM Length = 157 Score = 145 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 95/151 (62%), Gaps = 5/151 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDD---TLVL 57 +K + Y D+ + A++AGETS A LA S LL E + W GFY ++ LV+ Sbjct: 3 SKADAYQDVRKQIAAVIAGETSRTARLATASCLLREMFGERFFWTGFYEVDPAKPTELVV 62 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KN 116 GP+QG + C+RIP GRGVCG A A + Q +EDVH F GHIACD+ SNSEIV+P+ Sbjct: 63 GPYQGTMGCLRIPFGRGVCGAAAATGETQLVEDVHAFPGHIACDSRSNSEIVVPVRDAAG 122 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 ++ VLDIDST FG F + D+ GL + +L Sbjct: 123 ALVAVLDIDSTEFGAFDEVDQAGLEAICGEL 153 >UniRef50_C6JPT3 GAF domain-containing protein n=2 Tax=Fusobacterium RepID=C6JPT3_FUSVA Length = 168 Score = 145 bits (365), Expect = 8e-34, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 91/147 (61%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E Y+ + ++ E+ +A LAN SA + +INW GFYLL+ + LVLGPF Sbjct: 11 LNFKEKYSAFLNEIEEYLSKESDPIANLANASAFISAFFDEINWCGFYLLKKNELVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 G A RI +G GVCGT+V R + +E+V F GHI CD S SE+V+PL+ +I G Sbjct: 71 CGMPATTRIQIGNGVCGTSVERKEKIVVENVCEFPGHITCDVRSKSEVVIPLIKDEKIYG 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQL 147 VLDIDS V+ RF+ E+ + L + VA + Sbjct: 131 VLDIDSAVYSRFSSEEVEILEKAVAII 157 >UniRef50_Q2S4P6 GAF domain protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4P6_SALRD Length = 170 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-LEDDTLVLGPF 60 +K E YAD R +AL+ G T +++ +A + L+ +W GFY + DD L++GP+ Sbjct: 13 DKAERYADTRRRIDALLDGPTDWVSAMATVACELHHSFDHYDWTGFYRAVSDDELLVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQII 119 QG C+ I V RGVCG A + Q DV HIAC +++ SEIV+P++ + ++ Sbjct: 73 QGPHGCLHIDVDRGVCGAAARTRETQLWPDVSKAPDHIACQSSTQSEIVVPVLTPDDALL 132 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 VLD+DS G F D + L L L T+ + Sbjct: 133 AVLDVDSDTLGAFDPTDREHLEALCRDLGAQFGDTELR 170 >UniRef50_B8M5D8 GAF domain nucleotide-binding protein n=10 Tax=Leotiomyceta RepID=B8M5D8_TALSN Length = 645 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 62/205 (30%), Positives = 91/205 (44%), Gaps = 58/205 (28%) Query: 2 NKTEFYADLNRDFNALMAGETSF--------------------LATLANTSALLYERL-- 39 +K + Y + L+ G+ ++ + LAN S+LL+ Sbjct: 19 SKEQVYDQVLEQATGLVTGQRNWVRTPRHRTSIKLDEGKETNTDSNLANVSSLLWHAYAS 78 Query: 40 -----TDINWAGFYLLED-------------------------------DTLVLGPFQGK 63 + +NWAGFY+ +D L+LGPFQGK Sbjct: 79 LPKPSSAVNWAGFYVRDDLFPLLASPKRSNSISGLTTTTISTSYASHHDKKLLLGPFQGK 138 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 AC I GRGVCGTA + + + DV F GHIACDA S SEIV+P++ + + + ++D Sbjct: 139 PACQEIRFGRGVCGTAAQKKETVVVPDVLEFPGHIACDADSRSEIVVPILFEGETVAIID 198 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLE 148 ID T F + D++ L QL L Sbjct: 199 IDCTEPAGFDEVDKKYLEQLAQLLA 223 >UniRef50_B0SZJ0 GAF domain-containing protein n=10 Tax=Alphaproteobacteria RepID=B0SZJ0_CAUSK Length = 164 Score = 142 bits (359), Expect = 3e-33, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 4/146 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVLG 58 +K YA+L ++ +++ GET+ A +A +++L W GFY+++ D LV+G Sbjct: 13 DKAARYAELAQEIASVLDGETNLTARMATVASMLASSFDHYFWTGFYVVDPLKDRELVVG 72 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQ 117 P+QG + C+RI GRGVCG A Q Q +EDVH F GH+ACD+ S SEIV+P+ Sbjct: 73 PYQGTLGCLRIAYGRGVCGAAAETGQTQLVEDVHAFPGHVACDSRSQSEIVVPVFDAAGT 132 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQL 143 ++ V D+DS F D+ G+ + Sbjct: 133 LLAVFDVDSDQPAAFDAVDQHGIEII 158 >UniRef50_A3UEE7 Putative uncharacterized protein n=13 Tax=Rhodobacterales RepID=A3UEE7_9RHOB Length = 166 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 5/151 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL-TDINWAGFYLLEDD---TLVL 57 K E Y + ++ A++AGETS A A + LL W GFY+++ LV+ Sbjct: 13 TKAEAYVRIGKEIAAIVAGETSRTARYATAACLLAHNFGPRFFWTGFYVVDPQKPQELVV 72 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KN 116 GP+QG + C+RIP GRGVCG A + Q + DV F GHIACD+ S SEIV+P++ Sbjct: 73 GPYQGTLGCLRIPFGRGVCGAAAQSGETQLVRDVEAFPGHIACDSRSRSEIVVPVLDADG 132 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + VLD+DS F ED+ GL + L Sbjct: 133 ALAAVLDVDSAELDAFDAEDQAGLEAICKIL 163 >UniRef50_Q4A6T4 Putative uncharacterized protein n=1 Tax=Mycoplasma synoviae 53 RepID=Q4A6T4_MYCS5 Length = 148 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L + + +L+A E + LANTSA +Y+ ++NWAGFYL E + L L FQGKIAC +I Sbjct: 2 LVQQYKSLIADEVKIYSILANTSAFIYQNFKNLNWAGFYLAEGEVLYLSSFQGKIACTQI 61 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVF 129 P RGVCG A + ++DVH F HIACD+ASNSEIV+P++V +++ GVLD+DS + Sbjct: 62 PFSRGVCGKAAREQKTIVVDDVHEFKDHIACDSASNSEIVIPIIVNSKLYGVLDLDSPLK 121 Query: 130 GRFTDEDEQG-LRQLVAQLEKVLA 152 F D++ L ++ +L + Sbjct: 122 SNFKDKEIVLTLEKIATELANKIK 145 >UniRef50_C7RCG9 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=C7RCG9_KANKD Length = 171 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 73/145 (50%), Positives = 103/145 (71%), Gaps = 3/145 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLG 58 +K E+Y L +AL+A +++++ +A SA +++ L D+NW+GFYL+ D+L+LG Sbjct: 15 DKPEYYRQLALQLDALLAEDSNWITNMAQMSAFIFQMLPDLNWSGFYLVNPEKADSLILG 74 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 P+QGK+ACV IP GRGVCG A A + Q +EDVH F+GHIACDAAS SE+V+P+V+ Q+ Sbjct: 75 PYQGKVACVHIPYGRGVCGAAAATLETQLVEDVHKFEGHIACDAASQSEVVIPVVINGQL 134 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQL 143 GVLDIDS + RF +D GL L Sbjct: 135 KGVLDIDSPITNRFDQQDADGLTLL 159 >UniRef50_B0N5U0 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0N5U0_9FIRM Length = 157 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 91/146 (62%) Query: 12 RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPV 71 + +AL+ ++ L+N SA + + +DI+W GFYL +D+ L+LGPFQGK AC IP Sbjct: 10 QQLDALLENINYEISLLSNASAFIKQVFSDISWVGFYLCQDNQLILGPFQGKTACTLIPF 69 Query: 72 GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 +GVCG + + DVH F HIACD+A+NSE+V+PL++ N + GVLD+DS F R Sbjct: 70 NKGVCGACATNLKTYCVPDVHQFPSHIACDSATNSELVIPLIIDNSLYGVLDLDSRCFAR 129 Query: 132 FTDEDEQGLRQLVAQLEKVLATTDYK 157 F +D++ L +L + K L + Sbjct: 130 FQPDDQEELEKLALIIIKHLKRIKEE 155 >UniRef50_B9L0G4 GAF domain protein n=3 Tax=Bacteria RepID=B9L0G4_THERP Length = 164 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + + + A +A + +L + +W G YL+E D LVL + Sbjct: 5 TRDAILQQVRQTLEARLALSDQIPQLAEDVCRILERTVPWYDWVGIYLVEGDELVLAAWS 64 Query: 62 G--KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G VRIP+G+G+CG A Q + DV ++ C ++ SEIV+P+ +I Sbjct: 65 GPAATEHVRIPIGQGICGAAAREGQTIIVPDVRQDPRYLQCFLSTRSEIVVPIRQDEDVI 124 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 G +DIDS F ++D L L ++L + L Sbjct: 125 GEIDIDSDELAAFDEKDRALLEWLASELAERL 156 >UniRef50_B7C822 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7C822_9FIRM Length = 148 Score = 140 bits (354), Expect = 1e-32, Method: Composition-based stats. Identities = 61/140 (43%), Positives = 83/140 (59%), Gaps = 2/140 (1%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKIA 65 L L+ +A ++N ALL+ + +INW GFY+ ++ LGPFQGK+A Sbjct: 3 EILIEQCKYLVDETLPNIANISNLIALLFHEMENINWLGFYICDEKNQECTLGPFQGKVA 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 C RIP +GV GT + QRIEDVH F GHIACD ASNSEI +PL +++ +LDID Sbjct: 63 CTRIPYRKGVVGTCAKTQETQRIEDVHKFAGHIACDCASNSEICIPLKKDGKLVAILDID 122 Query: 126 STVFGRFTDEDEQGLRQLVA 145 S F F+ ED+ L ++ Sbjct: 123 SFEFNNFSIEDQAILEKICE 142 >UniRef50_C8P9E9 GAF domain protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P9E9_9LACO Length = 155 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 3/150 (2%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKIA 65 + +L+A E S + LAN SAL+ + + +NW GFY + D LVLGPFQG++A Sbjct: 5 QLMLSQLKSLLADEHSPVTILANASALINQTVDQLNWVGFYRYDHANDELVLGPFQGRVA 64 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDI 124 C+ I +G GVCGTA +VQ + DV + G+I+CDAA+ SE+V+PLV + GVLD+ Sbjct: 65 CMHIKMGAGVCGTAAQDRKVQVVADVSQYPGYISCDAAAKSELVVPLVRQDGSLYGVLDL 124 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 D+ V RF + + A + K + Sbjct: 125 DAPVRDRFDKQLVATMTTSAAIIMKAIDEA 154 >UniRef50_A6TNM9 Putative GAF sensor protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TNM9_ALKMQ Length = 155 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 1/151 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K E + L + AL++ E LL + NW GFY++E+ LVLG + Sbjct: 5 TKKELFLRLEKKAFALISKEEQLDNVYQGIVELLDNNIPYYNWTGFYMIENGELVLGHYL 64 Query: 62 GKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 G I +G+G+CG A R + ++DV ++AC + SEIV+P++ + ++G Sbjct: 65 GAHTDHTHIQIGQGICGQAADRKETFIVDDVTKETNYLACSFETASEIVVPILKGDDVLG 124 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +DIDS F D+ L + A+L + L Sbjct: 125 EIDIDSHEPSAFDSLDQHLLESICAKLAERL 155 >UniRef50_Q3J6E1 GAF domain protein n=8 Tax=cellular organisms RepID=Q3J6E1_RHOS4 Length = 150 Score = 139 bits (350), Expect = 3e-32, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 2/139 (1%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL-VLGPFQGKIA 65 Y L++ AL GE +A +A + ++ +W GFY + L +GP+QG Sbjct: 3 YDQLDQTIEALCHGEQDTVALMATVACEIHHAHPLSDWTGFYRVTGPELLKIGPYQGAHG 62 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDI 124 C+ IP RGVCG A ++Q + DV F HIAC + + SEIVLP+ + ++GVLD+ Sbjct: 63 CLVIPFSRGVCGAAARTGRIQLVPDVEAFPDHIACSSTTRSEIVLPVRNGEGWLLGVLDL 122 Query: 125 DSTVFGRFTDEDEQGLRQL 143 DS FT+ED L+ L Sbjct: 123 DSNTPAAFTEEDAARLQAL 141 >UniRef50_Q754F5 AFR115Wp n=1 Tax=Eremothecium gossypii RepID=Q754F5_ASHGO Length = 176 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD----INWAGFYLLEDDT--- 54 +++E + + AL + + + LAN S+LL+ + +NWAGFY+ E D Sbjct: 18 DRSEALIYMIESYQALAEHQDNMVCNLANASSLLWHVYRNLNVKVNWAGFYITEKDDPNM 77 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV 114 L+LGPFQGK+AC RI GRGVCGTA +VQ + DV V+ GHIACD + SE+V+P++ Sbjct: 78 LLLGPFQGKVACQRIQFGRGVCGTAALTQEVQVVPDVTVYPGHIACDGDTKSEMVVPILQ 137 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 N+ + ++D+D + FTD D++ L +L ++ + Sbjct: 138 DNRTVAIMDLDCSEHNGFTDLDKKYLEKLAQEISRTCK 175 >UniRef50_A9BH36 Putative GAF sensor protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BH36_PETMO Length = 315 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 7/154 (4%) Query: 3 KTEFYADLNRDFNALMAGET--SFLATLANTSALLYERLTDINWAGFYLLE---DDTLVL 57 K + L L++ + + L S LL ER+ NW GFYL++ D++LVL Sbjct: 159 KKADFWILYDKIKTLISDKNYNDKQSILKLISQLLAERIPYYNWVGFYLVDETEDNSLVL 218 Query: 58 GPFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-K 115 GPF G+ +I G+G+CG A + ++DV D +++C + SEIV+P+ Sbjct: 219 GPFVGEPTEHTKIKFGQGICGQAASTKTTFVVDDVSKEDNYLSCSPKTQSEIVVPIFDKN 278 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 I+G +DIDS F +D L + L + Sbjct: 279 GNIVGEIDIDSHEKAPFDQDDRSFLEAIAKLLSE 312 >UniRef50_Q039U2 GAF domain-containing protein n=13 Tax=Lactobacillales RepID=Q039U2_LACC3 Length = 160 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 99/153 (64%), Gaps = 2/153 (1%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACV 67 + + L+ GET+ + LAN SALL + +TD+NWAGFYL D T L LGPFQGK+AC+ Sbjct: 8 IVDQLDGLLTGETNPITVLANASALLNDLMTDLNWAGFYLYNDKTGQLDLGPFQGKVACM 67 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 I G GV GT+ A+N V R+ +VH F GHIACD+ASN+EIV+P+ V N+++ ++DIDS Sbjct: 68 HIQPGNGVVGTSYAQNAVLRVPNVHEFAGHIACDSASNAEIVVPITVDNRVVAIMDIDSP 127 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 RF++ DE L + L L T + Sbjct: 128 TLDRFSENDEAILTKFGETLAAHLDTAALNTVY 160 >UniRef50_B7RB60 GAF domain protein n=6 Tax=Thermotogaceae RepID=B7RB60_9THEM Length = 309 Score = 138 bits (349), Expect = 6e-32, Method: Composition-based stats. Identities = 47/150 (31%), Positives = 77/150 (51%), Gaps = 4/150 (2%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K E++ L ++ ++ L + L ++ +W GFY +ED L LGPF G Sbjct: 163 KKEYFDSLLKEIEKILERGKE---ALGDLCKFLRNHVSYYDWVGFYFVEDGKLKLGPFVG 219 Query: 63 KIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + V IP G G+CG A R + ++DV +++C + +EIV+P+ +IIG Sbjct: 220 EPTEHVEIPFGVGICGQAAEREETFVVQDVSKETNYLSCSPKTKAEIVVPIFKDGKIIGE 279 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 LDIDS F++ED L ++ + KV+ Sbjct: 280 LDIDSYSPSPFSEEDRAFLEKVCELVSKVV 309 >UniRef50_D2VMX6 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VMX6_NAEGR Length = 186 Score = 138 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 14/158 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLLEDD------ 53 E Y L ++ ++M+ E++ +A LAN ++L Y INW GFYL++ Sbjct: 22 EETYTKLLKEIESVMSDESNLIANLANCASLFYNTFLENGHPINWFGFYLIDVKTNDKPI 81 Query: 54 -TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 LVLGPF GK+AC RI G+GVCG + + ++ + +VH F GHIACD+ASNSEI +PL Sbjct: 82 RELVLGPFHGKLACTRIRFGKGVCGACITKEEIIVVPNVHEFSGHIACDSASNSEICVPL 141 Query: 113 VV--KNQIIGVLDIDSTVFGRFTDE-DEQGLRQLVAQL 147 Q+ G++D+DST +F+ E D + L++L + Sbjct: 142 FNSQNGQVFGLIDVDSTALEQFSLEIDGKYLKELANLI 179 >UniRef50_Q4DK73 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=Q4DK73_TRYCR Length = 549 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 21/172 (12%) Query: 2 NKTEFYADLNRDF-------NALMAGETSFLATLANTSALLYERLTDI------------ 42 +K E Y L ++++ + + L+N SALL+ L Sbjct: 14 SKRELYTRLEAVVRSFVELPSSMLTPHFNLMIGLSNVSALLFYELNRFANTNAMLSDLPL 73 Query: 43 NWAGFYLLE-DDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYLL+ LVLGPFQG+ AC+ + +GRGVCGTA + + + DVH F GHIACD Sbjct: 74 NWLGFYLLQSPQRLVLGPFQGRPACIEVAMGRGVCGTAAQKGETLIVPDVHAFPGHIACD 133 Query: 102 AASNSEIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 + SNSEIV+P+ K ++GVLD+DST F ED QGL+ + L + L Sbjct: 134 SLSNSEIVVPIKTAKGHVVGVLDVDSTQREFFDAEDAQGLQNIATVLSQNLE 185 >UniRef50_UPI000196B632 hypothetical protein CATMIT_01330 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196B632 Length = 153 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACV 67 L + L++ F+ L+N SALL + + D++W GFY++ LVLGPFQGK+AC Sbjct: 2 ELLIKQLEELISPNEWFVTNLSNASALLVDAIDDLSWVGFYMMRAGELVLGPFQGKVACT 61 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDIDS 126 I VG+G CG V +Q IEDV F G+IACDA + SEIV+PL + ++I VLD+DS Sbjct: 62 HIKVGKGACGVCVQGDQTILIEDVTTFPGYIACDAEAKSEIVVPLHDEEGKVIAVLDVDS 121 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLAT 153 GRF D++++ L LEK L + Sbjct: 122 NSLGRFGDKEQELFEALGKVLEKSLWS 148 >UniRef50_C8NCX0 GAF domain protein n=11 Tax=Bacteria RepID=C8NCX0_9GAMM Length = 163 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 2/149 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K YA + A++ E+ +A LANT+A+L E W GFY + D LVL FQ Sbjct: 10 DKAARYAQILPQLRAIIEDESDTVANLANTAAVLKEAFG-WLWVGFYRVVGDELVLSAFQ 68 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK-NQIIG 120 G +AC RI GRGVCG A A+N+ + DV+ HIAC + S SEIV+PL + Sbjct: 69 GPLACTRIARGRGVCGQAWAQNRTLIVPDVNAHPDHIACSSRSQSEIVVPLRDASGAVWA 128 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEK 149 VLD D+ F + D QGL + L + Sbjct: 129 VLDADAEALAVFDETDAQGLETIAVWLSE 157 >UniRef50_A4HD30 Putative uncharacterized protein n=3 Tax=Leishmania RepID=A4HD30_LEIBR Length = 524 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 61/172 (35%), Positives = 93/172 (54%), Gaps = 21/172 (12%) Query: 2 NKTEFYADLNRDFNALMAG-------ETSFLATLANTSALLYERLTDI------------ 42 +K E Y L + AL+ G + + + L+N +AL + L Sbjct: 13 SKKELYDWLVKQVEALVDGMSKRFTPQANLIIGLSNVAALCFYELNRFCNPGAALEKLKV 72 Query: 43 NWAGFYLLE-DDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL + L LGPFQG+ AC I VG+GVCGT + + +V F HIACD Sbjct: 73 NWFGFYLFQAPGLLALGPFQGRPACTEIRVGKGVCGTVAESGESLVVSNVEEFPSHIACD 132 Query: 102 AASNSEIVLPL-VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 ++S SE+ +P+ + ++ V+D+DST G F++ED++GL ++ A LE+ L Sbjct: 133 SSSKSEVAVPVLIENGSVVAVIDVDSTELGYFSEEDKEGLERVAAVLEQHLN 184 >UniRef50_B0MYW5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYW5_9BACT Length = 151 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 77/146 (52%), Gaps = 1/146 (0%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K Y L + A LA A+L+ ++ W G Y L DD L++ +QG Sbjct: 4 KLAKYDRLYEQIKGYVQTTDDIWARLATMEAVLHHKMQTFFWTGVYALIDDELIVRSYQG 63 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQIIGV 121 +AC ++ GVC AV+ + + DV F GHIAC++ S SEIVLP+ + ++ Sbjct: 64 PVACQKLRHHTGVCWAAVSTGETVIVPDVERFPGHIACNSKSRSEIVLPIRDREGRVFAC 123 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQL 147 LD+DS F EDE+GL+++++ L Sbjct: 124 LDVDSDRLDAFDREDEEGLKKILSLL 149 >UniRef50_D1VVF9 GAF domain-containing protein W n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VVF9_9FIRM Length = 170 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 97/163 (59%), Gaps = 6/163 (3%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E + A + E+ F+A +AN S+++ + D+NWAGFY++ D LVLGPF Sbjct: 11 LNNEERLKYMVSFAKATIEIESDFVAMMANLSSVIMATIKDLNWAGFYIVRKDQLVLGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC R+ +GVC +A + R+++VH F H+ACD+ASNSE+VLP+ + ++I Sbjct: 71 QGLPACTRLK-DKGVCVSAWQNKSIVRVKNVHEFKDHVACDSASNSEMVLPIKIHGEVIA 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 VLD+DS RF + +E+ LV +E L +K + + Sbjct: 130 VLDLDSPKIARFGEVEEKHFADLVKLIEDQL-----EKTYEEL 167 >UniRef50_C2CFA2 GAF domain protein n=2 Tax=Anaerococcus RepID=C2CFA2_9FIRM Length = 163 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 52/151 (34%), Positives = 86/151 (56%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +N E +L + E + +A +AN SA + + D+NWAGFY++ D L+LGPF Sbjct: 11 LNDKERMDELINYVKIQVDDEENPIALMANVSAFIMAIIKDLNWAGFYIVGDGNLILGPF 70 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 QG AC R+ +GVC A ++ +++DV F H+ CD SNSE+V+P+ + + Sbjct: 71 QGLPACTRLSFDKGVCAKAYREGKIIKVDDVSKFIDHVVCDNNSNSELVVPIFNEGDLKC 130 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +LD+DS RF+ + +G +++ LE + Sbjct: 131 LLDLDSPKLARFSQVEVEGFKEIGKILENRI 161 >UniRef50_C9ZNQ7 Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=C9ZNQ7_TRYBG Length = 576 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 99/179 (55%), Gaps = 21/179 (11%) Query: 2 NKTEFYADLNRDFNAL-------MAGETSFLATLANTSALLYERL------------TDI 42 +K FY+ L ++ + +A + + L+N +A L+ L + Sbjct: 16 DKVTFYSRLVKEVQGIVEFPSKRLAPAANAIINLSNVAASLFYGLNRHANPEAVLQSPPV 75 Query: 43 NWAGFYLLEDDTL-VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 NW GFYL+ L LGPFQG+ AC I +GRGV GTA + + + DVH F GHIACD Sbjct: 76 NWLGFYLMHGPELLALGPFQGRPACTEIKMGRGVSGTAAQQAKTLVVSDVHEFPGHIACD 135 Query: 102 AASNSEIVLPLVVK-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +ASNSEIV+P+ +++G++D+DST F D D QGL+++ + + + + + +F Sbjct: 136 SASNSEIVVPIKSATGEVVGIIDVDSTQLNFFDDVDAQGLQEVAEIVARHVDFSVFHQF 194 >UniRef50_Q5K748 Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5K748_CRYNE Length = 191 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 24/176 (13%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERL------------TDINWAGFYLL 50 K EFY + AL+ GE ++ L+ SA+LY +NW GFYL Sbjct: 16 KAEFYDHVVSHLEALLEGERYWVTNLSQASAILYHSFLACSIYGGDAHSPVVNWCGFYLQ 75 Query: 51 EDDTLVL---------GPFQGKIACVRIPV--GRGVCGTAVARNQVQRIEDVHVFDGHIA 99 GP+ G+ AC+ I G+GVC A + DV + GHIA Sbjct: 76 PPAHPSSSSSSSPLLLGPYHGRPACLSITPTPGKGVCADAFVNQATLIVPDVETYPGHIA 135 Query: 100 CDAASNSEIVLPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 CD + SEIV+PL ++IGVLD+DST F ++D++GL ++ L K Sbjct: 136 CDGDTKSEIVVPLRDGDGKVIGVLDLDSTQLATFDEDDKKGLERVAEVLAKGCDWV 191 >UniRef50_C5CF04 Putative GAF sensor protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CF04_KOSOT Length = 318 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 4/149 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 + + L + + E F L LL +T NW GFYL ++D L+LGP Sbjct: 167 ERKRRFEKLFNVISEKI-REKEFDEKLKTIVKLLDHYVTYYNWTGFYLTDEDEATLLLGP 225 Query: 60 FQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 F G+ VRI G+G+CG A + + + DV +++C + SEIV+P++ N++ Sbjct: 226 FVGEPTEHVRIKFGQGICGQAAEKKALFLVPDVSREANYLSCSPKTKSEIVVPILKGNKV 285 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 IG LDIDS G FTD D + L ++ L Sbjct: 286 IGELDIDSHSIGAFTDADSEFLEKICKLL 314 >UniRef50_C5GND5 GAF domain nucleotide-binding protein n=2 Tax=Ajellomyces dermatitidis RepID=C5GND5_AJEDR Length = 240 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 64/228 (28%), Positives = 95/228 (41%), Gaps = 75/228 (32%) Query: 1 MNKTEFYADLNRDFNALMAGETSFL----------------------------------- 25 ++K E Y+ + L+ G+ +++ Sbjct: 13 LSKAEVYSQVLEQAKGLLDGQRNWVCIPYLQPMPLYRCPMVTIASIASIASIPSMMAIFN 72 Query: 26 ---------------ATLANTSALLYERL-------TDINWAGFYLLED----------- 52 + LAN ++LL+ +++NWAGFY+ +D Sbjct: 73 RSYANKNAYTGIIKVSNLANVASLLWHAYAALPTPSSNVNWAGFYVRQDKFPSLASPDSD 132 Query: 53 -------DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN 105 TL+LGPFQGK AC I GRGVCG A R + + DV ++GHIACDA S Sbjct: 133 TKGTPSTKTLLLGPFQGKPACQLIQFGRGVCGAAAERRETVLVTDVLNWEGHIACDAESR 192 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 SEIV+P++V + + ++D+D T F D D Q L L A L Sbjct: 193 SEIVVPILVNGETVAIIDVDCTQPSGFDDVDRQWLEALAAILSDSCDW 240 >UniRef50_A9NHG8 Putative uncharacterized protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHG8_ACHLI Length = 154 Score = 131 bits (330), Expect = 8e-30, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 85/146 (58%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC 66 Y L L++ E + L+ L+N SA L + + D+NW GFY+ ++ L LGPFQGK+AC Sbjct: 3 YKVLLESAEGLLSTEPTNLSILSNASAFLNDAIPDLNWVGFYMYKNGILTLGPFQGKVAC 62 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 I G+GV GT+ ++N+V +++VH + HI CD S SE V+P+ I +LD+DS Sbjct: 63 NLIMPGKGVVGTSYSKNEVIVVKNVHEIENHITCDPISMSETVIPIRHNGAIWAILDLDS 122 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLA 152 V RF + L+Q +E + Sbjct: 123 PVENRFDKDLVDFLQQFGLLIENYID 148 >UniRef50_A7HLN1 Diguanylate cyclase n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HLN1_FERNB Length = 778 Score = 131 bits (329), Expect = 9e-30, Method: Composition-based stats. Identities = 52/166 (31%), Positives = 80/166 (48%), Gaps = 8/166 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPF 60 +K+E + L + + A + L LL E + NW GFYL++D+ LVLGP+ Sbjct: 156 DKSEIFEYLKKQI--VSAKNENLLEM---ICKLLDEHVPYYNWTGFYLMDDEGMLVLGPY 210 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK-NQI 118 G+ VRIPVG+G+CG A ++DV +++C SEIV+P+ + Sbjct: 211 VGEPTEHVRIPVGKGICGQAADTKLTFIVQDVSQETNYLSCSPHVKSEIVVPIFRNDGSV 270 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 G +DIDS F + D++ L + QL D K +A Sbjct: 271 FGEIDIDSHYIAPFDNRDKEFLEWIAKQLMVRTVHWDEFKRRIKIA 316 >UniRef50_Q2S9K8 GAF domain-containing protein n=5 Tax=Proteobacteria RepID=Q2S9K8_HAHCH Length = 169 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 3/152 (1%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFY-LLEDDTLVLGPF 60 K+ Y R + GET + A L+ L+ R +W GFY ++ + + +GP+ Sbjct: 13 EKSAHYQHTLRAIRHAIEGETDWTAILSTVVCELHHRFEYFHWTGFYRVVAHELMKVGPY 72 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQII 119 QG C+ IP RGVCG A +VQ + DV+ F GHIAC + + SEIVLPL + Sbjct: 73 QGGHGCLTIPFSRGVCGAAAREQKVQLVSDVNEFPGHIACSSTTQSEIVLPLFNANGDVA 132 Query: 120 GVLDIDSTVFGRFTDEDEQGL-RQLVAQLEKV 150 VLDIDS F DE+ L L + Sbjct: 133 AVLDIDSDHIDAFDAVDERFLAELLTDLIPLA 164 >UniRef50_Q1IN96 Putative GAF sensor protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IN96_ACIBL Length = 163 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 73/162 (45%), Gaps = 8/162 (4%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-------DD 53 M T+ L + + + + L + L NW GFY++E D Sbjct: 1 MQLTQTREQLTAQLKTMAETAPTVEDLMTDIVGRLQQYLPHYNWVGFYMIEKSLLPGVDP 60 Query: 54 TLVLGPFQGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 LVLGP+ G RIP+ G+CG AV ++DV+ ++AC + SEIV+P+ Sbjct: 61 VLVLGPYVGAPTTHTRIPLNEGICGAAVTTGDTVIVDDVNSDPRYLACSLETKSEIVVPI 120 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +K +I+G LDIDS F DED + + L T Sbjct: 121 RMKGEIVGELDIDSHDAAAFGDEDRTFCEFCAKLVGEYLERT 162 >UniRef50_C1TRB2 GAF domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRB2_9BACT Length = 169 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 76/154 (49%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQ 61 + Y +N L+ E LA LAN +ALLY L D+NWAGFYL+ + LVLGPFQ Sbjct: 14 EQLYNYVNAKLLGLICEEPDPLANLANAAALLYLLLDDLNWAGFYLMREKENALVLGPFQ 73 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 GK AC RIP+ +GVCG A ++ + DV +F GHIACD AS SEIVLPL+ + +++GV Sbjct: 74 GKPACTRIPLDKGVCGAAARTGEIHIVPDVELFPGHIACDGASASEIVLPLMREGRVLGV 133 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 LD+DS + RF+ ED +GL + V L K +A D Sbjct: 134 LDLDSPLRKRFSSEDGEGLLKFVETLHKYVAWDD 167 >UniRef50_B3QW57 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW57_CHLT3 Length = 163 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 88/146 (60%), Gaps = 1/146 (0%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +KT+ Y L R+ L+ G+ +A AN AL++ + DI+WAG Y + L+LGPFQ Sbjct: 12 SKTDLYKSLTRELFVLLKGDNDLIANTANFVALIFHNVPDIHWAGIYFYKSGKLILGPFQ 71 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD-AASNSEIVLPLVVKNQIIG 120 GK AC ++ VGRG+ G A R + +E+VH G I+ + A +NS+I +PL+ + +IG Sbjct: 72 GKPACPKLEVGRGLTGIAAERMKTTMLENVHEIPGQISFNAAETNSQISVPLIKEGHLIG 131 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQ 146 VLDI S + RF ED+ GL L Sbjct: 132 VLDISSELLSRFDAEDKAGLENLCEV 157 >UniRef50_B7ID90 Putative uncharacterized protein n=1 Tax=Thermosipho africanus TCF52B RepID=B7ID90_THEAB Length = 312 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 8/163 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPF 60 +K E + L + + + LY+ + +W GFY++ D L L F Sbjct: 155 DKDELFDKLLDKLEK--ESKDDPVKYMRKICQYLYDEIPYYDWVGFYMINKDNVLELFEF 212 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ V+I +G G+CG A V ++DV +++C SEIV+P+ ++I Sbjct: 213 VGEPTEHVKINIGEGICGQAAMLKDVFIVQDVSKETNYLSCSPKVKSEIVVPIFKNKEVI 272 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 G LDIDS F + D + L ++ + K+ +K Sbjct: 273 GELDIDSHYITPFDERDRKFLEKVCEDIPKIWD----EKLLEE 311 >UniRef50_A7EYD5 Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EYD5_SCLS1 Length = 155 Score = 127 bits (319), Expect = 1e-28, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT----LV 56 ++K E YA + + L G+ +++A FY L+ + L+ Sbjct: 13 ISKEEAYAQVLEEARGLFDGQRNWIAIEIEI--------------SFYTLDPSSTKPSLI 58 Query: 57 LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 LGPFQGK+AC I RGVCGTA + Q + DV F GHIACDAAS SEIV+P++V Sbjct: 59 LGPFQGKVACQTIAFSRGVCGTAASTQTTQLVPDVEKFPGHIACDAASQSEIVVPIIVDG 118 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 + ++D+D V F + D + L +L L Sbjct: 119 IVKAIIDVDCGVKEGFDEVDRKWLEELAGVLAVGCDW 155 >UniRef50_D0NAL6 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NAL6_PHYIN Length = 292 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 17/168 (10%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERL----TDINWAGFYLL------ 50 +N E D+ G+ ++A AN S++++ INWAGFY + Sbjct: 117 INAEELLGDVAAFTAT--TGQRDYVANAANVSSIIWHAFVEAERPINWAGFYFVRPLANP 174 Query: 51 ----EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS 106 D L+LGPF GK AC RI GVCG A VQRI DVH F GHIACD AS S Sbjct: 175 KETDHDHILILGPFMGKPACSRIRFQSGVCGAAWRTKSVQRITDVHEFPGHIACDDASQS 234 Query: 107 EIVLPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 E+V+P+ + ++I ++D+D F+ EDE+ ++ + + Sbjct: 235 ELVVPVFDKQGEVIALIDLDCPEKNGFSVEDERTFVEVARVMSEACDW 282 >UniRef50_B1MXN0 GAF domain protein n=1 Tax=Leuconostoc citreum KM20 RepID=B1MXN0_LEUCK Length = 160 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 6/153 (3%) Query: 1 MNKTEFYADLNRDFNALMAGETSF---LATLANTSALLYERLTDINWAGFYLLED--DTL 55 + + +++ + GE S LA +N +A+L++ + +NW GFYL ++ D L Sbjct: 2 LEEQNRVPLISQLLETWIQGEVSQNYQLANYSNAAAILFQNMKQLNWVGFYLYDEESDKL 61 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV-V 114 V+GPF GK A I GV G A + + + DVH F GHI CD S SEIV+P++ Sbjct: 62 VVGPFLGKPAVALISPESGVVGKAFSAQKTIIVSDVHSFSGHIVCDPESKSEIVVPIITR 121 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 + +GVLDIDS RFT ED+ L V L Sbjct: 122 DGKRLGVLDIDSPELNRFTLEDQVSLEHFVQTL 154 >UniRef50_A6LMS7 GAF domain-containing protein-like protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LMS7_THEM4 Length = 304 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 7/154 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL-VLGPF 60 +K E + ++ + N++ + + +LY+++ NW GFY++ D+ L L F Sbjct: 154 DKDEIFEEILMELNSV-----DDESYMRKACEILYDKIPYYNWVGFYMINDEGLLELYDF 208 Query: 61 QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 G+ V+I +G G+CG A + ++DV +++C SEIV+P+ +++I Sbjct: 209 VGEPTEHVKIKIGEGICGQAANLKRTFIVQDVSKETNYLSCSPKVKSEIVVPIFNNSEVI 268 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 G LDIDS F D+Q L+++ ++ ++ Sbjct: 269 GELDIDSHYISPFDLRDDQFLKKICIRVSEIWKN 302 >UniRef50_A5FJZ4 GAF domain-containing protein-like protein n=19 Tax=Bacteroidetes RepID=A5FJZ4_FLAJ1 Length = 151 Score = 121 bits (304), Expect = 7e-27, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 74/149 (49%), Gaps = 4/149 (2%) Query: 7 YADLNRDFNALMAGETSF-LATLANTSALLYERLTDINWAGFYL--LEDDTLVLGPFQG- 62 + +L +A+++ L LL E + NW GFY LE+ TL LGP+ G Sbjct: 3 FQELQPKISAIISDNNKVRDEKLLAVCQLLNENVEYYNWVGFYFANLENKTLHLGPYVGA 62 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + IP G+G+CG N + DV D +IAC SEIV+PL V IG + Sbjct: 63 ETDHTVIPFGKGICGQVAESNANFVVPDVKAQDNYIACSLTVKSEIVVPLFVNGVNIGQI 122 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 DIDS V FT+ DE+ L + ++ K+ Sbjct: 123 DIDSHVIDPFTEADERFLEFVNQEVAKLF 151 >UniRef50_C5RB85 GAF domain protein n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RB85_WEIPA Length = 163 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 60/117 (51%), Positives = 74/117 (63%), Gaps = 3/117 (2%) Query: 34 LLYERLTDINWAGFYLLED--DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDV 91 +LYE L +NWAGFYL + D L+LGPF GK A VRI G GV G A + ++DV Sbjct: 43 ILYENLATVNWAGFYLYDHEQDELILGPFLGKPAVVRIKPGSGVVGQAYESQETITVDDV 102 Query: 92 HVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 H GHIACD+ASN+EIV+PL + IGV+DIDS F RFTD+D+ L L Sbjct: 103 HQHAGHIACDSASNAEIVVPLTRENGEKIGVIDIDSITFNRFTDQDKADLEHFAQTL 159 >UniRef50_Q1IL10 Serine phosphatase n=2 Tax=Acidobacteria RepID=Q1IL10_ACIBL Length = 584 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 72/169 (42%), Gaps = 10/169 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED------DT 54 ++ L + + + + L LL + + LL+ Sbjct: 168 VSNQAKSLLLLNEISRELTSILNLDQLLKRVGELLTRVIDYQMF-SILLLDPMGEKLQHR 226 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV 114 L + IP+GRG+ G AV +N+ + DV +I + + SE+ +PLV Sbjct: 227 FSLRFQENIHLKHDIPLGRGLVGYAVGKNEAVLVPDVRKDSRYIMLNPETRSELAVPLVY 286 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 K ++IGVLD++ T G FT++ ++ L L AQ+ + + + + + Sbjct: 287 KGKVIGVLDLEHTKRGFFTEDHKRTLTTLAAQIAIAI---ENARLYEQI 332 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 31/139 (22%), Positives = 65/139 (46%), Gaps = 9/139 (6%) Query: 32 SALLYERLTDINWAGFYLLED--DTLVLGPFQGKIA----CVRIPVGRGVCGTAVARNQV 85 A L ++ + + L+ + L + G A RI +G+G+ G A + Sbjct: 34 VAGLVRKIINYDIFAILLVNEKAQELRIRFQVGHPAEAIERTRIKIGQGITGAAAQTREP 93 Query: 86 QRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 + DV +I + SE+ +P++VKN++IGV+DI++ FT+E + L + + Sbjct: 94 VLVNDVSKHPEYITSVSDVRSELAIPMIVKNKVIGVIDIEAPQKNYFTEEHSRLLTVIAS 153 Query: 146 QLEKVLATTDYKKFFASVA 164 ++ + + + + V+ Sbjct: 154 RVAIGI---ENARLYTRVS 169 >UniRef50_D1C9Z9 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9Z9_SPHTD Length = 883 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 15/170 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPF 60 + E + +A +A L+++ + +L++DD LVL Sbjct: 329 RAEQLKAV-NQLARRLAAVRDPDTLIATAVDLIHDLMGYSL-VYLFLVDDDTGELVLRAH 386 Query: 61 QGKIACVRIPV------GRGVCGTAVARNQVQRIEDVHVFDGHIA--CDAASNSEIVLPL 112 + G G+ A Q + DV +++ A + SE +P+ Sbjct: 387 SDPANPPGLRNLRLRIGGPGIVAEVAATGQAIVVADVSKDPRYVSTPETANTRSETAVPI 446 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 + + +++GVLD+ ST F D LR + QL L + + F Sbjct: 447 LREGEVLGVLDLQSTRVDAFDAHDLTTLRTIADQLAVAL---ENARLFRE 493 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 22/165 (13%), Positives = 50/165 (30%), Gaps = 18/165 (10%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF------QGKI 64 D ++ + L A + ++ L +T + P Q + Sbjct: 166 LGDIARAVSTTQNPQDLLEQVHAACSRIVNGDDFC-IALYNSETGCITPKLLYVRGQRRR 224 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIED-VHVFDGH-IACDAASNS-----EIVLPLVVKNQ 117 P + + + + D V + + + ++ + P+V Q Sbjct: 225 DREGQPTRNALARVVAEQQRPLAVPDYVAACADYGVTPNPEYDTGKPIPWMAAPMVQGEQ 284 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 IGV+ + S++ F ED + L + L + + Sbjct: 285 TIGVISVFSSLL-PFDWEDVEILASIARHTAVAL---ENSRLLLE 325 Score = 53.4 bits (127), Expect = 3e-06, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 20/158 (12%) Query: 24 FLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP----FQGKIACVRIPVGRGVCG-- 77 L + + E N YLL++D L P + + R VG V Sbjct: 517 LDEVLERLAEGIAEAAGVPN-CAIYLLDEDEQSLVPAATVVGPRSSFDRTRVGTTVVRVA 575 Query: 78 ------TAVARNQVQRIEDVHV---FDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + + + V D + + +PL K +I+GV + S Sbjct: 576 DSPTVRMVLGQREPFSCCQVPQMVGDDPALHAALGGACALAVPLAAKGRILGVAFVFSET 635 Query: 129 F-GRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 FT + Q +R + + + + +A G Sbjct: 636 PCDGFTPDRIQLIRGVADSAGLAV---ENARLYAQSHG 670 >UniRef50_A1HTU0 Diguanylate cyclase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTU0_9FIRM Length = 491 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 13/168 (7%) Query: 1 MNKTEFYADLNRD----------FNALMAGETSFLATLANTSALLYERLTDINWAGFYLL 50 M+K + Y A++ + L + L A LL Sbjct: 147 MSKLDLYLMDLEQAHKKLAALYRITAIVQKTVNENEVLNEILEGITRELG-FTCAAILLL 205 Query: 51 EDD--TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEI 108 + + L + +G VRIP+G+G+ G A Q+ + DV +I SE+ Sbjct: 206 DKERQELTIKAHRGYSNNVRIPLGKGITGYAALTGQLIYVPDVRHDPRYIKGTHDGVSEV 265 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 +PL+V N+IIGVLD+++ R D D LR L +Q+ +A ++ Sbjct: 266 AVPLIVNNEIIGVLDVETNQAKRLQDYDLDLLRSLASQISMTIAHANH 313 >UniRef50_Q9HJW5 Putative uncharacterized protein Ta0848 n=1 Tax=Thermoplasma acidophilum RepID=Q9HJW5_THEAC Length = 141 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 1/136 (0%) Query: 18 MAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRIPVGRGVC 76 M + + + L E+ +W GFY+LE L L F G K V I +G G+C Sbjct: 1 MDLKEFARSQMQAACQYLKEKNPKYDWVGFYVLEHGKLKLEAFVGEKTDHVEINLGDGLC 60 Query: 77 GTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDED 136 AV +N + DV ++AC ++ SEIV+P+ + + IG +DIDS F+ ED Sbjct: 61 SLAVLKNDIVNEYDVKSNPKYLACFPSTQSEIVVPVRYQGEPIGEIDIDSDKKAAFSKED 120 Query: 137 EQGLRQLVAQLEKVLA 152 E L + + ++ Sbjct: 121 EAMLSSIADLMAPLVH 136 >UniRef50_Q1IHX7 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHX7_ACIBL Length = 499 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 4/149 (2%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG---PFQGKIA 65 + D + + L A++ + + A L + D VL F + + Sbjct: 11 AILYDASQAVLSTFQLDEVLNQILAIVRDYF-HLEGASVLLFDKDRTVLRVRLSFGKQPS 69 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 + +P+G+G+ G AV + + DV +I ++ SE+ +PL+V+++++GVLD Sbjct: 70 SMEVPLGKGLTGAAVHQKRPIYSPDVTKDKRYICAVESTRSELAIPLMVRDEVVGVLDCQ 129 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATT 154 S F E E L Q ++ Sbjct: 130 SDQVDFFDTETEDLLTLFATQASIGISNA 158 Score = 58.0 bits (139), Expect = 1e-07, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 57/159 (35%), Gaps = 13/159 (8%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPFQG------KIAC 66 + L + L ++ E D TL+L +G + + Sbjct: 177 IASKATASLKLEELLVQLCMAIATNL-ALDGISVLTCEPDGTLILRAQEGSLKPVIETSQ 235 Query: 67 VRIPVGRGVCGTAVARNQVQRI-EDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDID 125 +P G A++R + + D+ + + SE++LPLV + +G++ + Sbjct: 236 ALLPEG-NPAERALSRKKPVVLHPDL--DSRPVLY-EGAGSELMLPLVSAGKPLGMIVMG 291 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 + F +ED Q L + + Y + ++A Sbjct: 292 ARSDTGFPEEDMQTLVSVADICATAIQNAFYFQQVEALA 330 >UniRef50_A5UV89 Protein serine phosphatase with GAF(S) sensor(S) n=5 Tax=Chloroflexaceae RepID=A5UV89_ROSS1 Length = 1017 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 63/162 (38%), Gaps = 6/162 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ------G 62 +D + + L++ L+ ER F + ED L G Sbjct: 410 QAIQDVSERITAILELDQLLSSVVRLIRERFGYHTVHIFLIGEDGRLHFGASTVEGQSLE 469 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 ++ + + G G+ G+ Q + DV +I+ D+++ +E+ +PL ++IGVL Sbjct: 470 RLRRMVLQPGEGIVGSVALTGQPALVNDVRTDPRYISDDSSTRAELAVPLRYAEKVIGVL 529 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 DI S GRF D R L Q+ + + A Sbjct: 530 DIQSAEAGRFQRSDLFVTRTLADQVAVAVERARAFQAQREEA 571 Score = 78.8 bits (193), Expect = 7e-14, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 52/162 (32%), Gaps = 14/162 (8%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC 66 LN ++ E A L+ ++ D + L + ++ Sbjct: 237 LGLLNEASREIIRAELDVDA-LSELIYRAASKVVDTSSFHLGLFDPESDRYTLVVRVQDR 295 Query: 67 VRIPV-------GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE------IVLPLV 113 VR+P G G+ G + +ED + SE I +PL+ Sbjct: 296 VRLPPLTVDLPSGDGLVGWMRQTGRSLLVEDFATEMDRLPARPRYQSERPPRSGIYVPLL 355 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 ++IG + I S F +D + L L Q ++ Sbjct: 356 DGGRVIGTISIQSYQPYAFDADDLRMLSLLADQAAVAISKAR 397 Score = 43.3 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 42/167 (25%), Gaps = 18/167 (10%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + L + L + TS L L L + + P Sbjct: 569 EEAWTLNALLQVAENL-SRATSLDVLLPAVVR-LPPLLLGCVRCTCLIWDRQAASFTPLA 626 Query: 62 GK----------IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN----SE 107 + C + V + D GH+ S Sbjct: 627 AYGLSPADRATFVGCPIAERDAPLLAEVVRTVAPLAL-DSARGHGHLCAPIIERFGSASL 685 Query: 108 IVLPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLAT 153 + PL + +GVL ID RFT D +Q+ L + Sbjct: 686 LATPLWTRGAALGVLVIDYGPAEHRFTARDLILANGFASQIAGALES 732 >UniRef50_A8UPH1 Putative orphan protein ; putative GGDEF protein n=1 Tax=Flavobacteriales bacterium ALC-1 RepID=A8UPH1_9FLAO Length = 400 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 62/171 (36%), Gaps = 11/171 (6%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV----- 56 +K ++D+ F+ + S L + +L I+ YLL++ V Sbjct: 14 SKDLKFSDVLMQFSESLLDINSEDEILWMLAKNCISKLGFID-CVVYLLDESRNVMVQKA 72 Query: 57 -LGPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLP 111 GP K V P+G G+ G + I D + D SE+ +P Sbjct: 73 AYGPKNPKGFEISEPVERPIGFGIVGHVAKTGNAELINDTSNDVRYKMDDEFRFSEVCVP 132 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +++ ++IG++D + F++ L + + + K + Sbjct: 133 IIIDGEVIGIIDCEHPEKNFFSEHHLHMLLTISSICAIKIKGVRTNKKYIQ 183 >UniRef50_D1CAG3 Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAG3_SPHTD Length = 1113 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 5/153 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLGPFQGKIA 65 + ++ G T A + + + LL + YL++ +T L P G + Sbjct: 788 HIVYKVAQMIGGVTDLSAFITDVTDLLRREIGV-GHLELYLVDPETGDLLGQTPGPGAVT 846 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAASNSEIVLPLVVKNQIIGVLDI 124 VR+P G+G+ G R+ D H ++ + S + +PL + + IGV+ + Sbjct: 847 GVRVPAGQGLVGWVARYQTPARVADTHNDVRTMSMATSPMRSALAVPLAIDGRTIGVISL 906 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 +S G FT+ DE L + QL +V+ Sbjct: 907 ESRRVGVFTENDEALLTIIAQQLAQVIEVAQLH 939 Score = 56.4 bits (135), Expect = 3e-07, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 20/164 (12%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGK- 63 Y +F+ M G +T L+ + + YL + + L + G Sbjct: 420 YRQQLLEFSQRMNGILDPDELADSTVQLISQTMGA-THVRLYLYDPAMRSYHLWTWVGIE 478 Query: 64 --IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + V + DV ++ +++PL+ K Q + + Sbjct: 479 PDPEDQTLGPHHSVVEAVQEAEGPVQNLDV----------DPADEALIVPLINKGQAVAL 528 Query: 122 LDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 L + +T ED+ L + QL T+ + + + Sbjct: 529 LTLGPKRVDLPYTSEDQALLSTVANQLAIA---TENAQLYGRMR 569 >UniRef50_A5UX58 Diguanylate cyclase with GAF sensor n=4 Tax=Roseiflexus RepID=A5UX58_ROSS1 Length = 785 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 5/156 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK-IACV 67 L MA E A + YL + D L L G + Sbjct: 267 HLIGQVREAMAREIDLPALFRTVVESIAATFGYSLVC-LYLRDGDELALQHQVGYAVQLD 325 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDST 127 RIP GRGV + + I DV I SEI +PL ++++IG L+I+ST Sbjct: 326 RIPFGRGVISRTILSGRATLIADVRSDPDFIGVMDNIVSEICVPLRDQDRVIGALNIEST 385 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 TD+D + + +L + + + + + + Sbjct: 386 DSVVLTDDDLRVMTELAEHINVAI---ERARLYEQL 418 Score = 84.9 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 58/180 (32%), Gaps = 19/180 (10%) Query: 1 MNKTEFYADLNRDFNAL---------MAGETSFLATLANTSALLYERLTDINW-AGFYLL 50 + + Y L R L + G L L + Y Sbjct: 409 IERARLYEQLWRRVQQLDVLYDIMTDITGNLDRDTVLKAIVERTIALLRVTHGMIALYDP 468 Query: 51 EDDTLVLGPFQGKI---ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE 107 E + L + G A +RI G GV G Q + D + ++G S Sbjct: 469 EQNNLRIHYSVGMNRDYAGMRIAPGEGVIGRVAQTRQPLVVYDYNQWEGRTPLFQEMPSS 528 Query: 108 --IVLPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 + +PL+ +++IG L + FTD+D + L Q + + FA V Sbjct: 529 NVLGVPLLSGDELIGTLSAGDFNLKRVFTDDDIRLLSIFAQQATIAIKNA---RLFAEVQ 585 Score = 59.5 bits (143), Expect = 4e-08, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 12/162 (7%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL-VLGPFQGKIA 65 Y + + + L + L D TL + GK A Sbjct: 71 YFAVLHETALAIMSRLDLNDVLETIMMHAARLAGANDGFIDLLSPDGTLLEMKIGIGKHA 130 Query: 66 CVR---IPVGRGVCGTAVARNQVQRIEDVHVFDGHIA--CDAASNSEIVLPLVVKNQIIG 120 R I + G+ G +ED ++G + + + I +PL +++ IIG Sbjct: 131 RNRGSVIAISEGISGRVCQTGAPMMVEDYRNWEGRVRSIDTSDFGTVIAVPLRLRSAIIG 190 Query: 121 VLDI--DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 VL + D+ F + L + + D + + Sbjct: 191 VLGVSYDTPTLEGF-ESIVTLLMRFAELAAIAI---DNARLY 228 >UniRef50_A0Z996 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z996_9GAMM Length = 607 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 63/161 (39%), Gaps = 11/161 (6%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG---PF 60 Y D+ F + + N + L + YL+ DD L+L Sbjct: 17 RNRYLDILHQFTLRQSSLAKLEDIVWNIAKTAIAELGFED-CVVYLIADDGLMLKQVAAH 75 Query: 61 QGKIACVR-------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 K R IPVG+G+ G +VQRI+D + +I D SE+ +P+ Sbjct: 76 GPKNPVDREIFNEITIPVGQGIVGHVAQTGEVQRIDDARLDPRYIEDDDFRLSELAVPIS 135 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +IIGVLD + FTDED + + + + T Sbjct: 136 HDGRIIGVLDSEHHAAKFFTDEDVRLFTTIASLASTRIDTA 176 >UniRef50_Q025X3 Serine phosphatase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q025X3_SOLUE Length = 581 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 76/168 (45%), Gaps = 9/168 (5%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP-- 59 ++ + + + L+ ++ +++ L + ++ + L Sbjct: 176 DRQNRTLKTLANISREFSSILDLNELLSKIASTMHD-LIAYDAFSILSVDHEAKALKHLF 234 Query: 60 ---FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 + ++ +P+G+G+ G A +V R+ D +IA A SE+ +PL++++ Sbjct: 235 SIRYDKRVNIDNVPLGKGLTGAAAESREVVRVHDTAKDPRYIASHADIRSEVAVPLILQD 294 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +++GV+D++S G F D+ + L L Q+ ++ + + +A +A Sbjct: 295 RVVGVMDLESDRVGYFNDDQVRTLALLAPQVA---SSVENARLYAELA 339 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 6/163 (3%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPF 60 ++E L + +A + LAN + ++ + L +A E L + Sbjct: 13 ERSELLDFLL-EVSASITQTLDLDQLLANVAEMVQKVLPYDLFAILLYSERRRDLRIRYA 71 Query: 61 QGKIACVR----IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 G V I G G+ GTA AR + + DV ++ A +E+ +P+ + Sbjct: 72 VGHRDDVVRNLSIAEGEGITGTAAARREPVLVSDVRNDPRYLNTVDAVRTELAVPMTARG 131 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +++GV+D+ ST +T+ D +R + A++ + + Sbjct: 132 KLVGVIDLQSTRVDAYTEYDRALMRLIAARVSIAIDNARLYRR 174 >UniRef50_Q6L0D7 Hypothetical phosphodiesterase n=2 Tax=Thermoplasmatales RepID=Q6L0D7_PICTO Length = 145 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 1/126 (0%) Query: 28 LANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI-PVGRGVCGTAVARNQVQ 86 L + + L NW G Y++ + L L + GK I +G G+C AV + + Sbjct: 16 LNDLCSYLRSENEKYNWVGVYVVNNGNLSLISYSGKRTEHEIINLGSGLCSLAVTKRMII 75 Query: 87 RIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ 146 DV ++AC +NSE+V+P+ N+IIG +DIDS F ++DE+ + + Sbjct: 76 NEGDVRSNSDYLACFPETNSELVVPIEYDNKIIGEIDIDSDKKSAFNEDDERYISDICNY 135 Query: 147 LEKVLA 152 + ++++ Sbjct: 136 IARLVS 141 >UniRef50_C6VRP5 Putative phytochrome sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VRP5_DYAFD Length = 1182 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 15/169 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL------ 57 + D F + G+ S + + +L + YLL+ +T L Sbjct: 786 KKDLDDTIEYFANSVYGDNSVNEICWDIARNCISKLHFED-CVVYLLDKETNTLIQKAAY 844 Query: 58 GPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 GP K + + IPVG G+ GTA A Q I D +I D A SE+ +P++ Sbjct: 845 GPKSPKEYEILNPIEIPVGEGIVGTAAATGLPQIIGDTSKDPRYIIDDQARFSELAVPIL 904 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQ----LEKVLATTDYKK 158 + Q+IGV+D + + + + + + A + + +A ++ Sbjct: 905 HEGQVIGVIDSEHPSKNFYNHDHVRAISTIAAISANKITEAMARAQAER 953 >UniRef50_B3E1R0 Diguanylate cyclase with GAF sensor n=1 Tax=Geobacter lovleyi SZ RepID=B3E1R0_GEOLS Length = 356 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 68/177 (38%), Gaps = 19/177 (10%) Query: 5 EFYADLNRDFNALMAGETSFLA------TLANTSALLYERLTDINWAGFYLLEDDTLVL- 57 E A N + +L+ + ++ L + + + L W L++++T L Sbjct: 9 ELLARRNAELASLLEIGKTLISSLELREVLQSIMSQVERLLQPKTW-SLLLVDEETNELC 67 Query: 58 -----GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----DAASNSE 107 P ++ +R+ +G G+ G Q I DV + +S Sbjct: 68 FEIAVSPVAQELKGIRLKMGEGIAGWVAQTGQPLLIPDVSQDPRFANHVAEEVEYPVSSI 127 Query: 108 IVLPLVVKNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + PL ++++++GV+++ +T+ F D+D L + + + + + Sbjct: 128 LCAPLKIRDRVLGVIELINTLGERTFDDDDLPLLGAVADFAAIAIDNARNYRRVSEL 184 >UniRef50_Q04HB5 GAF domain-containing protein n=2 Tax=Oenococcus oeni RepID=Q04HB5_OENOB Length = 154 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 83/145 (57%), Gaps = 3/145 (2%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIACV 67 L++ F A E +A LAN +A+L + + DINWAGFYLLE + LVLGPFQG A Sbjct: 10 LSKIFLAAHETEKDKIANLANAAAVLMQFVPDINWAGFYLLEKGSGDLVLGPFQGLSATP 69 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL-VVKNQIIGVLDIDS 126 RI GV GT + + + DVH F GHIACD ASNSEI LP+ + IG+LDIDS Sbjct: 70 RIKQDSGVVGTTFTKQTLTIVPDVHQFAGHIACDPASNSEIALPITRKNGEKIGILDIDS 129 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVL 151 + RF + L + L + Sbjct: 130 PITNRFDQQIALDLENFIQTLLVNI 154 >UniRef50_A3QE18 Diguanylate cyclase/phosphodiesterase with GAF sensor n=1 Tax=Shewanella loihica PV-4 RepID=A3QE18_SHELP Length = 790 Score = 105 bits (262), Expect = 7e-22, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 15/174 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG----- 58 Y + +F M + L + + + +L + YLL+ VL Sbjct: 11 DAKYLKIISEFAIDMLSLSGVDEILWHLAQNVVSQLGFDD-VVVYLLDPARGVLMQKASF 69 Query: 59 -----PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 +A + + +G GV GT Q + D +F +I DA SE+ +P++ Sbjct: 70 GDKNPSGHEILAPIELKLGEGVVGTVAKTKQPLNVTDTRLFPNYIVDDAPRLSELAVPML 129 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY----KKFFASV 163 ++ ++IGV+D + +T E+ L L + + + +K A + Sbjct: 130 MEGEVIGVIDTEHPKKNFYTPHHERILFALASIAALKIHRANNLVTLQKRVAEL 183 >UniRef50_Q1K0H7 Sensor protein n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0H7_DESAC Length = 532 Score = 104 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 4/166 (2%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPF 60 ++ + + S L + N + +D LVL Sbjct: 14 SQEQKLLRAYHAIGDELISLASLPELLNKILEISKNVFQFENAIMRLVSDDGKELVLAAS 73 Query: 61 QGKIAC---VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQ 117 G ++ +G G+ G A I++V +I + + +PLV +++ Sbjct: 74 YGYPDPAIKRKLQMGEGIMGRVAASAAPVLIDNVTEDHDYIPGIPDARCALCVPLVARDR 133 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +IGV +++S G F ED L + A + + + + Sbjct: 134 VIGVFNVESHQEGTFHSEDVAPLMTMAAHAAIAIENARLYERTSQL 179 >UniRef50_A0LL31 Serine phosphatase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LL31_SYNFM Length = 438 Score = 104 bits (260), Expect = 9e-22, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 64/173 (36%), Gaps = 20/173 (11%) Query: 5 EFYADLNRDF------NALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL- 57 E Y + + +AL+ L N + + L+++ T L Sbjct: 17 ERYRERIDNLRECFRTSALINSTLELDEVLENIMTT-SRSILKADACSLMLVDEATDELV 75 Query: 58 -----GPFQGKI-ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNS 106 GP GK+ A R+ G G+ G + IEDV+ ++S Sbjct: 76 FAVAQGPVAGKLKAGFRLRKGDGIAGHVFQTGKPLLIEDVYRDARFHQEFDRKTGYRTHS 135 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYKK 158 + +PL +K+++IGV + + + G F EDE+ L L + + Sbjct: 136 MLCVPLKIKDRVIGVSQVINRLDGTSFVAEDEETLGLLCDHAAIAIENARMHR 188 >UniRef50_B8G854 Sensor protein n=3 Tax=Chloroflexus RepID=B8G854_CHLAD Length = 880 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 12/170 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD------- 53 + + + + + L N+ +L + A L E++ Sbjct: 324 LEEEKDRLATLHAIASEVNRSLDLDLILNNSLEMLAHIVQA-EHASILLTEEESPSLLAT 382 Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN----SEIV 109 +LG VR +G+G+ G A Q + DV D + ++ S I Sbjct: 383 RAILGRKVTPDNTVRFAIGQGIAGWAAQHGQTVLVNDVQQDDRWVTIPGSNRKREGSMIA 442 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +PL V+ +++GV+ + + F + + L + + + Sbjct: 443 VPLFVQGEVLGVMTLSHSRPNFFHEGHVRLLNACAGTIAIGINNAKLYRM 492 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 15/154 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL-----VLGPFQGKIA 65 D + ++ A + L RLTD +L + D G +G Sbjct: 154 LNDISQRLSATLDHDALIEIVIDSL-HRLTDAYHVALWLTDSDRRFRVVACRGSTEGPSV 212 Query: 66 CVRIPVGRGVCGTAVARNQV-QRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 +P A H A S +V+P+ +IG + + Sbjct: 213 GYVLP-ETNPVIQAAFTGTSGTFWPTAPTDPSH-QWLLAGCSVLVIPMTGGEGVIGAVTL 270 Query: 125 D---STVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 + + RF + + + +Q L D Sbjct: 271 QERHNPLDLRFMQD---LAQSIASQAAIALQNAD 301 >UniRef50_A0CKR5 Chromosome undetermined scaffold_2, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CKR5_PARTE Length = 163 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 81/158 (51%), Gaps = 12/158 (7%) Query: 2 NKTEFYADLNRDFNALMAGETSF--LATLANTSALLYERLTDINWAGFY------LLE-- 51 NK + Y + + + + A + +LL +T + + GFY L++ Sbjct: 5 NKVQEYEKVLDLLDHFLKKYQNLGRNAIETSIVSLLKNNVTGLFFVGFYQVIDGILIDSI 64 Query: 52 -DDTLVLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV 109 D+ L +GP+Q +A RI G+G CG A +VQ EDV V +IACD + SEIV Sbjct: 65 LDNHLEVGPYQSTILATPRIEKGKGQCGQCWAEGKVQIQEDVKVCQNYIACDNETQSEIV 124 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 +P++ ++ VLDIDS RF + D + L+++V L Sbjct: 125 IPVIKNGVVLSVLDIDSEHLSRFDEVDSKYLQRIVEYL 162 >UniRef50_B7S3A8 Sensor protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S3A8_9GAMM Length = 635 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 36/159 (22%), Positives = 57/159 (35%), Gaps = 11/159 (6%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---GPFQG 62 Y ++ F S N + L ++ YL+++D L Sbjct: 50 RYLEILHRFTLSQEPLKSVEDICWNIAKTAIAELGFLD-CVVYLVDEDNEYLFQVAAHGP 108 Query: 63 KIACVR-------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK 115 K R I VG GV G + Q I D +I D SE+ +P+ + Sbjct: 109 KNPDQRLIASPLKIKVGEGVVGHVACTGEAQIISDTRQDSRYILDDEFRLSELAVPITHQ 168 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 ++IGVLD + F+ ED Q + + A + T Sbjct: 169 ERVIGVLDSEHPDADFFSTEDVQLFKTIAALASNRIDTA 207 >UniRef50_UPI000187DAE5 hypothetical protein MPER_10200 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187DAE5 Length = 216 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 52/207 (25%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDI------------NWAG--- 46 K EF+A + L+ G+ S++ A+ S+L+Y L NW G Sbjct: 13 TKAEFWAHVATQLQHLLDGQRSWVTNTASASSLIYFSLQAFPAFFGPDETKAVNWVGKKG 72 Query: 47 -FYLLEDD----------------------------TLVLGPFQGKIACVRIPVGRG--- 74 F + E D L+LGPF GK AC I V G Sbjct: 73 HFSMSEHDQILTGIPNTGVYIDSKYFPPSQDSNSAARLLLGPFCGKPACQFINVNPGKKN 132 Query: 75 --VCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRF 132 VC + + DV + GHIAC AA+ SEIV PL +GVLD+D G F Sbjct: 133 PGVCADGFIHGKSLLVPDVDQYPGHIACFAATKSEIVCPLFDGETPVGVLDLDCLALGGF 192 Query: 133 TDEDEQGLRQLVAQLEKVLATTDYKKF 159 +ED+ GL + + K ++D+ + Sbjct: 193 DEEDKIGLDKCAEIISK---SSDWTRL 216 >UniRef50_A9B1I0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1I0_HERA2 Length = 1877 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 11/157 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK----- 63 + + + + ++ + + L A YL++ T G Sbjct: 597 ETSNEVSRRLSTILNPNQLVLEVVEQLKNTFNYY-HAHIYLVDQQTNEFVMMGGTGQAGR 655 Query: 64 ---IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKNQI 118 RIP GRG+ G A V + DV G +A + +EI +P+++ +++ Sbjct: 656 TLLARNHRIPQGRGLVGRAANTKDVVLVPDVSREAGWLANPLLPETKAEIAVPIMLGDEV 715 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 +GVLD+ + T++D L+ + AQ+ L Sbjct: 716 LGVLDVQNAEVNSLTNDDATLLQSIAAQVAVALENAQ 752 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 16/166 (9%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKIAC 66 + + AG + L L R A YL ++ L L G+I Sbjct: 1455 ETVAQVSTSAAGLLNVEELLQTVVDLTKHRFGLY-HAHIYLYNPESQLLELAFGAGEIGR 1513 Query: 67 VRIPVGRGV--------CGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKN 116 + GR + A + DV + + +E+ PL+ + Sbjct: 1514 TMVKEGRTIPLDREQSLVAQAGRARRSIIENDVRSNPSFLPHPLLPETRAEMATPLIAGS 1573 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 ++GVLD+ S FTD+D + L +Q+ L + FA Sbjct: 1574 MLLGVLDVQSDQSNIFTDDDRKIQTTLASQIAIALQNA---RLFAE 1616 >UniRef50_A9WFK4 GAF domain protein n=3 Tax=Chloroflexus RepID=A9WFK4_CHLAA Length = 545 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 34/168 (20%), Positives = 63/168 (37%), Gaps = 8/168 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP-F 60 + L + +A + L + L ++ ++L+++T L Sbjct: 160 ERDLRELHLLYEIGQSLAVNLDLASLLNDI-KLRAPKVVGAERCSIFILDEETNELVLEI 218 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEIVLPLVVK 115 G+ R+P RG+ G V Q + DV D + S + +P+ VK Sbjct: 219 PGEQRQYRMPADRGIAGWVVTHGVGQIVNDVEHDPRWYDAISREADFVTRSIVCVPMRVK 278 Query: 116 NQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +++IG + + + G FTD+D Q L L AQ + + Sbjct: 279 DRVIGAMQLLNKANGQPFTDQDMQLLTTLAAQAAIAIENARLYQRLKE 326 >UniRef50_Q1PXD5 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXD5_9BACT Length = 483 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 59/173 (34%), Gaps = 12/173 (6%) Query: 3 KTEFYAD-LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K + L + + NT +L E L ++ F L++D+ L ++ Sbjct: 28 KERLFELYLLYSLSKNLNVSLQLNELFHNTINVLKESLRIEDFC-FMLIDDECNELKMWK 86 Query: 62 ------GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI---ACDAASNSEIVLPL 112 G+ + +G G+ G + I D + S I +PL Sbjct: 87 VDDCSFGEAKGITFKIGEGISGLVAQTGESILIPDTDKDPRFLFYKGKIPDIGSFISIPL 146 Query: 113 -VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 + +++IGVL+I F D D+ + + + + VA Sbjct: 147 KLNNDKVIGVLNIHKKEKNAFRDTDKMLFVAIAHNVAIAIDRARNYEHAQKVA 199 >UniRef50_B9XEL2 Sensor protein n=1 Tax=bacterium Ellin514 RepID=B9XEL2_9BACT Length = 580 Score = 101 bits (252), Expect = 8e-21, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 9/161 (5%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKI-- 64 DL ++ L + + + L+ T L + G Sbjct: 23 DLLYQVGNVIHSTLDPQEALQLIIDQAVRVMRASSGSVV-LINPTTNFLEIHASMGLPPN 81 Query: 65 -ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 A +++ VG G+ G + + R DV +I SE+ +P++V +I GV++ Sbjct: 82 AAALKLRVGEGITGWVAIKGKTVRSGDVTQDPRYIQLRQNVRSELAVPMLVNGEIRGVIN 141 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +DS F++ D++ L L +V+ T + + Sbjct: 142 VDSDRNNAFSEGDQELLEALALSASRVIQNTW---LYEQLR 179 Score = 79.2 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 12/169 (7%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPFQG 62 ++ + + L + + + L E L L G Sbjct: 181 KARLFEMLASVGQTINSALNLDDALHVITREACGMMQAKMCSLLMLQESGEWLELRASHG 240 Query: 63 ----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH----IACDAASNSEIVLPLVV 114 + ++ + + GT V R + ++E+V + IA + + +PL+ Sbjct: 241 AGEVYMKSPKLSMNESLLGTVVRRRKPIQVENVQTSSRYQRAEIARQEGLVALLSVPLIF 300 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 N+ IG L I + +F++E+ + L L + + + + + Sbjct: 301 ANECIGTLSIYTGRPYKFSNEEVRILSALAELSAIAI---EKARLYERI 346 >UniRef50_B8GBU0 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBU0_CHLAD Length = 1016 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 62/158 (39%), Gaps = 11/158 (6%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 + + F + L + LL+ ++E D L++ G++ + Sbjct: 477 QVLQQFTVRIGAVRDIDQLLDEATQLLHRTFGYYQ-VLISVIEHDQLIVRAAYGRLMHCQ 535 Query: 69 --------IPVGRGVCGTAVARNQVQRIEDVHVFDGHI--ACDAASNSEIVLPLVVKNQI 118 +P G+ G + Q + DV + ++ A+ +E+++P++V ++ Sbjct: 536 SSEQVFPPLPCDVGISGWVIRHAQPAIVNDVLRDERYVCHPFLPATAAEMIVPILVDERV 595 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 GV+ I+S V G F D + + + +A + Sbjct: 596 FGVITIESDVRGVFAQSDLDLVTAMAHLIGVTIANLQH 633 Score = 71.1 bits (173), Expect = 1e-11, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 9/161 (5%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIAC 66 A+ AL + L A L + + F + +D+ + L +G + Sbjct: 311 AEALHRLVALTNARIDQASVLDQILAELQRFIPFDSACVFVVHDDEYVRLIAQRGLRTPV 370 Query: 67 VRIPVGRGVCGTAV---ARNQVQRIEDVHVFDGH--IACDAASNSEIVLPLVVKNQIIGV 121 ++ + G T + DV G + S I +PL V IG Sbjct: 371 DQVTLFAGPGSTIYDLRQVGTARYHPDVQQLPGWQKVPDSEIIRSWIGVPLRVDQTTIGF 430 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 L ID + FT ED + Q+ V+ + Sbjct: 431 LTIDKWIPNAFTAEDVGTAQMFGEQVAAVINNV---RLLRE 468 Score = 60.3 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 10/133 (7%) Query: 39 LTDINWAGFYLLEDDTLVLGPF--------QGKIACVRIPVGRGVCGTAVARNQVQRIED 90 L+ + +LL++ L + R+ VG G+ G +VA Q+ +I + Sbjct: 59 LSGADVVTIWLLDEQGEWLTSAAILGLEDRPERERIFRLRVGEGIAGWSVAHRQILQITN 118 Query: 91 VHVFDGHI-ACDAASNSEIVLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLE 148 ++ D + +PL+V+ Q +G L + F+ E + + Q Sbjct: 119 PLHDPRYVPKLDRHPAIILSIPLIVRAQCVGALSLSRYTVATPFSQEVIETISIFADQAA 178 Query: 149 KVLATTDYKKFFA 161 + + Sbjct: 179 IAIDNATKAQILR 191 >UniRef50_B9DN89 Truncated GAF-domain protein (Fragment 1) n=1 Tax=Staphylococcus carnosus subsp. carnosus TM300 RepID=B9DN89_STACT Length = 124 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 2/104 (1%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 Y + + L A E + L+NTSALL E L++INW GFYL+ED L+LGPFQG+ Sbjct: 6 TNYKSIQQQLEGLNADEKYMITLLSNTSALLNENLSNINWLGFYLIEDGQLILGPFQGRP 65 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEI 108 AC I +G+GVCGT+V ++ QR++DVH F GHIACDA S + Sbjct: 66 ACTPIQIGKGVCGTSVEKDITQRVDDVHAFPGHIACDA--RSHL 107 >UniRef50_Q1VT20 Sensor protein n=2 Tax=Flavobacteriaceae RepID=Q1VT20_9FLAO Length = 969 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 57/161 (35%), Gaps = 11/161 (6%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQ 61 DL + + G+T + + L + YL++ + T Sbjct: 570 KTLIIDLINNLTKSILGKTDIIEIAWEIVNNIAAYLDTDD-CVIYLVDHEKETTEQIAVY 628 Query: 62 GK--------IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLV 113 G I + +P G+G+ G+ + Q I D D ++ + SEI +P++ Sbjct: 629 GAKLNNDSQIINKLYLPKGKGIVGSVAKSGKSQLINDTSKDDRYVIDEERRFSEITVPIM 688 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 IG++D + +T E + L + L T Sbjct: 689 SNGIAIGIIDSEHKDKNHYTQEHIKTLESIAGLAAIKLRTA 729 >UniRef50_A5UTQ7 Sensor protein n=1 Tax=Roseiflexus sp. RS-1 RepID=A5UTQ7_ROSS1 Length = 711 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 65/166 (39%), Gaps = 15/166 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------LVLGPFQGKI 64 D +++ L + L+++ T + + + K+ Sbjct: 185 LNDIASVVTSTLDTREVYRLVVQQLSDYFHVEAG-SLLLVDEATGDLEFVMTIEGGEEKL 243 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEIVLPLVVKNQII 119 A R+P G+GV G V + + + DV A ++ S + +P++ K ++I Sbjct: 244 AGFRVPAGQGVVGHVVRTGRWEIVHDVSRDPRFYRQISEATGFSTRSILCVPMIAKGRVI 303 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 G +++ + + G F +ED L ++ A + + + + F V Sbjct: 304 GAIELLNKIGGDFDEEDALRLMRMAAFIAVAI---ENARLFQQVTA 346 Score = 51.8 bits (123), Expect = 7e-06, Method: Composition-based stats. Identities = 28/160 (17%), Positives = 49/160 (30%), Gaps = 24/160 (15%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGKIACVR 68 L E + L ALL + W Y D L L G +R Sbjct: 40 LDQLLHLSLIELTRLCRADRAIALLKDVQGRAVWVCEYPQSGDAPELTLDAISGAADAMR 99 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + + + +A D +V PL+ +++ +G L I S Sbjct: 100 L-------------RRPIIVH--PQEQALLARD--VRVLLVAPLIARDETLGALAICSAH 142 Query: 129 F-GRFTDEDEQGLRQLVAQLEKVLATTDY----KKFFASV 163 F +D +R L Q+ V+ + ++ + Sbjct: 143 ATRTFDSKDVALIRALSGQIALVIMSHRSCESVERRTQEL 182 >UniRef50_B5YCA4 Ggdef domain/hd domain protein n=2 Tax=Dictyoglomus RepID=B5YCA4_DICT6 Length = 770 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 66/170 (38%), Gaps = 10/170 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + K + ++L F+ T + L +L I Y +D+ L + Sbjct: 416 LEKEKEVSELIDLFSEKTEKVTPLGSILKRVLNILDADAGSIMG---YDEDDNVLRIVAS 472 Query: 61 QGKI----ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA--SNSEIVLPLVV 114 G + +G G+ G + +EDV+ + + S I PL+ Sbjct: 473 FGLPQEVVENTVLRMGEGIAGWVAQHREPLILEDVYKDKRFVIIEPRFNIKSSICYPLIY 532 Query: 115 KNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 N+++GVL+I+S F +F D + ++ + + +L + ++ + Sbjct: 533 NNKLVGVLNINSLKDFKKFDKNDLAMVEKIASVIAYLLYKEELEQRIHRL 582 >UniRef50_Q1IKE0 Diguanylate cyclase with GAF sensor n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKE0_ACIBL Length = 362 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 23/165 (13%), Positives = 54/165 (32%), Gaps = 12/165 (7%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL------GPFQGK 63 + D + + + L + E W +++++ L G Sbjct: 30 IFHDVAKALTSSLNLDSILQTIMEKMAEYFRPDTW-SLLMVDEEKSELYFAIAVGDAAEA 88 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKNQI 118 + VR+ +G G+ G + + DV+ + S I +PL K+++ Sbjct: 89 LKTVRLKLGEGIAGWVAQHGESLLVPDVYTDPRFAKRIDEMTKWQTRSIICIPLKSKHRV 148 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +GV+ + + F + L+ L + + + Sbjct: 149 LGVIQLINVDMQGFGGNEMLLLQALADYAAIAIDNARAVEKIQEL 193 >UniRef50_Q4P1G5 Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P1G5_USTMA Length = 230 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 65/211 (30%), Positives = 91/211 (43%), Gaps = 64/211 (30%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDI--------NWAGFYLL-- 50 + K +FY L +L+ T +++ L+N S+L++ + NWAGFYLL Sbjct: 14 VTKADFYDHLESSLISLIDPGTDWISALSNASSLVFNSMNRFPAWTSKRINWAGFYLLSP 73 Query: 51 ------------EDDTLVLGPFQGKIACVRIP--VGRGVCG--TAVARNQVQRIEDVHVF 94 + TL+LGPF G AC I G+GVC +AV +V R+ D + Sbjct: 74 LLPSEIVSPKKRKHPTLLLGPFNGLPACQLIVSVPGKGVCADASAVLPPRVVRVADTDAY 133 Query: 95 DGHIACDAASNSEIVLPLVV--------------------------------------KN 116 GHIACD+ S SEIV+PLV+ ++ Sbjct: 134 PGHIACDSLSKSEIVVPLVIPRTRLAHVHQNALQQQSPLNQATPVDGDDRSWAGRGDAQD 193 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 IIGVLDID F EDE LR + + Sbjct: 194 IIIGVLDIDCESLDGFDQEDETRLRTIADLI 224 >UniRef50_A8UJB8 Sensor protein n=2 Tax=Flavobacteriales RepID=A8UJB8_9FLAO Length = 691 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 12/169 (7%) Query: 1 MNKTEFYA-DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL-- 57 + + + D+ D + G+ + + E L + YL++++ L Sbjct: 288 LEREQSLIIDMINDVAKAILGKMDIYEIAKEITNNIAEYLDTND-CIIYLVDNENNSLEQ 346 Query: 58 -GPFQGKIA-------CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIV 109 + K+ + +P+G G+ G + + I D ++ D SEI Sbjct: 347 IAAYGSKLNDKNEIKDKIVMPLGEGIVGCVARSGKAEIINDTSKDIRYVVDDERRFSEIA 406 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 +P++ +IG++D + FT + + L+ + + + L + + Sbjct: 407 VPIISDGNVIGIIDSEHISKSYFTKKHLRTLKNIASLVAMQLKSAINLR 455 >UniRef50_A7HH02 Putative GAF sensor protein n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HH02_ANADF Length = 153 Score = 99.6 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 1/116 (0%) Query: 37 ERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFD 95 +RL Y+L D L L F G + VRIPVG+G+CG + +V ++DV Sbjct: 37 QRLPRYTGVYLYVLRGDVLELDAFAGRETPHVRIPVGQGLCGLSARTREVVLVDDVAADP 96 Query: 96 GHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 ++AC+ + SEIV P++ + + +D+DS F D L + A LE V Sbjct: 97 RYLACNLETRSEIVFPILRGERYLAQIDVDSDHPAAFRTGDRAFLAEAAAILEPVF 152 >UniRef50_A6LSE0 Diguanylate cyclase n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LSE0_CLOB8 Length = 633 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 70/174 (40%), Gaps = 13/174 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYE------RLTDINWAGFYLLEDDT 54 ++K + + N+++ + +A+ LL T+ ++ +LLE D Sbjct: 99 IDKINRSIRILKFENSILYDTAFAIYNMASIQELLDTILVRLVTHTNADFGLIFLLEKDE 158 Query: 55 LVLGPFQ----GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 L L ++ +G G+ G + Q +DV +I C + + +I + Sbjct: 159 LKLKSHSNVLYEELEKTTFRIGEGLVGWKFYKGQGLLTDDVQKDFRYIRCISDTRGQITI 218 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 P+ + +I+GVL + S F + D + + + ++ + + K A + Sbjct: 219 PIKMHEKILGVLVLGSKKDSDFGESDFKLINTISGEIGLAI---NNAKLTAKLQ 269 >UniRef50_A9B1A0 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B1A0_HERA2 Length = 677 Score = 98.4 bits (244), Expect = 8e-20, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 15/165 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLV----LGPFQGKI 64 D A + + E LL+ + LV L + K+ Sbjct: 171 LNDIAATITSSLDPRQVYRLVVKKINEYFQVEAG-SLLLLDPVTNELVFVMTLEAGEEKL 229 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKNQII 119 A VR+P G+G+ G A+ Q + D + + S + +P++VKN+ I Sbjct: 230 AGVRVPPGQGLVGAAITTRQPVVVLDAQNDPRFYRRVSEDVGFVTRSVLCVPMLVKNREI 289 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 GV+ + + + G F ED Q L+ + + + + F V+ Sbjct: 290 GVIQLLNKLEGVFNTEDTQRLQAMANTVGVAIDNAN---LFHEVS 331 >UniRef50_A7NNT0 Sensor protein n=2 Tax=Roseiflexus RepID=A7NNT0_ROSCS Length = 911 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 60/165 (36%), Gaps = 16/165 (9%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGP 59 + E + + ++ + G+ +L + L+ + LL+ +T LV Sbjct: 365 DTLETLNAIALEVSSTLDGDEIMSNSLKTLAKLI-----GVQHGSIMLLDRETDQLVDRA 419 Query: 60 FQGK---IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD------AASNSEIVL 110 GK + VR +G+G+ G + ++DV S I + Sbjct: 420 VLGKSDNVGYVRFSLGQGIVGWVAHHRKPLIVDDVTADPRWTPPPIDDPLAKRQGSMIAV 479 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 PL+ ++++GVL + F +E + L Q+ + Sbjct: 480 PLIAHHEVLGVLVLSHEQPAYFREEHLRLLDASAKQIAIGIHNAQ 524 Score = 52.2 bits (124), Expect = 6e-06, Method: Composition-based stats. Identities = 21/167 (12%), Positives = 50/167 (29%), Gaps = 17/167 (10%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGK 63 L R+ ++ + + + +L + +LL +D L L G Sbjct: 188 RLNQLARELSSTFDRKEHLHSISVTLAEVLAPVV-----VDIWLLAEDATRLELAWRHGA 242 Query: 64 IACVR----IPVGRGVCGTAVARNQVQRIED-VHVFDGHIACDAASNSEIVLPLVVKNQI 118 + + + ++ + V A + + +PL+ ++ + Sbjct: 243 PMPDTRSIPLEATHDPVVQTLQQRELFLASNLVAADQN--AWHIPDVAVLGIPLITQSGV 300 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 GV+ + R +V Q L + + +A V Sbjct: 301 TGVILCQGDERTLADRSQQDFARSVVGQAAIAL---ENARLYAEVRA 344 >UniRef50_D1C7L1 Diguanylate cyclase and metal dependent phosphohydrolase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7L1_SPHTD Length = 888 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 11/153 (7%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT---LVLGPFQGKIA- 65 L + +A ++ L ++L D L + + +++ P Sbjct: 568 LLQRISAEVSALLDIDRFLRRLVSVLEAEFPDSV-CDILLRDPERGYLMLVTPDSEYPNL 626 Query: 66 -----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-ACDAASNSEIVLPLVVKNQII 119 + RG+ G Q + D ++ SE+ +PL++ + I Sbjct: 627 TVLSGTYILEEDRGIAGWVARHGVSQNVSDTRKDPRYVVRGHQPMRSELAVPLLIDGRCI 686 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 GV++++S F+ D+Q L + + + + Sbjct: 687 GVINLESPHAAAFSLTDQQVLEMIGTYVAQAME 719 Score = 58.4 bits (140), Expect = 8e-08, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 54/176 (30%), Gaps = 16/176 (9%) Query: 4 TEFYADLNRDFNALMAGETSFLA--TLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 + + ++ ++L S +A + + A +L + + L L Sbjct: 180 ADRHREILTSVHSLARRLNSAPTPEAIAEVAVEEISAVIRSGGAVLHLFDRPHNLLTLTA 239 Query: 60 FQGKIAC-----VRIPVGRGVCGTAVARNQVQRIEDVHVFDGH------IACDAASNSEI 108 G A I +G CGTA + ++ A ++ Sbjct: 240 STGLPAGAAEEIKHIALGTTPCGTAAVERDLVVATNLAADPRWPRAAELAARFPVLHTVW 299 Query: 109 VLPLVVK-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +PL+ + + ++G L + + D LR L Q+ L + Sbjct: 300 SVPLIGEQDDLLGTLALFHPEPRTPGELDTALLRLLAHQVAVALERALLADRTRDL 355 Score = 39.9 bits (92), Expect = 0.032, Method: Composition-based stats. Identities = 22/161 (13%), Positives = 43/161 (26%), Gaps = 29/161 (18%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 L L+AGE S + A L A + G + R+ Sbjct: 34 LAALVRGLLAGE-SLESLFAGALRELAPATGSDAAAVVVHATEGE-------GHNSHPRV 85 Query: 70 PVGRGVCGTAV----------ARNQVQRI-EDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 G G + + D+ C ++LP+ V +++ Sbjct: 86 IAGSGHDDLVPPPLPPEWDDPEMRRTCWVGPDLSGAGRSPWC-------LMLPISVGDEL 138 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 +G L + F+ E + + ++ Sbjct: 139 LGALCLHRASAEPFSAEQVALAEYFAEDAALAI---EQERL 176 >UniRef50_Q1VQE8 Sensor protein n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VQE8_9FLAO Length = 800 Score = 97.7 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 65/172 (37%), Gaps = 13/172 (7%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLL-EDDTLVLGPF 60 + + + F +L+ ++ ++ + L I+ YL +D L Sbjct: 8 ERKAHFLETINTFGSLLMKTSTTQESVWCVTKHAVGELGYID-CIIYLFNDDGVLFQCAA 66 Query: 61 QGK--------IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 G + +++ +G G+CG + I D +I D SEI +P+ Sbjct: 67 HGNKNPIAQDVLNPIKLKMGEGICGHVALTGIGEIIADTSKDPRYIVDDEDRRSEITVPI 126 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 + +IG++D + F+D D + L + + L ++ K +A Sbjct: 127 LSDGIVIGIIDSEYPEKDYFSDHDLKILNTIASMLSFKIS---QSKAVEELA 175 >UniRef50_Q3IKM7 Putative orphan protein ; putative GGDEF protein n=3 Tax=Alteromonadales RepID=Q3IKM7_PSEHT Length = 789 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 11/157 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG---------- 58 + F++ + + + + RL ++ YL + L L Sbjct: 19 SIINQFSSSLLQLDTLDELFEYVTTQVINRLGFVD-CVIYLADTANLTLIQAASMGVASE 77 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 + + I G+ G + I DV +IA + + SEI +PL+ K+ + Sbjct: 78 RKEYQAQRKVIRFDEGITGYVATTAKAIMIGDVTKDSRYIADERPAQSEICVPLIYKDHV 137 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 +GV+D + + FT+ + L + L + + Sbjct: 138 LGVIDCEHPIKNYFTNSHLEILTTVAHLLSAKINQVN 174 Score = 46.8 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 20/188 (10%), Positives = 50/188 (26%), Gaps = 26/188 (13%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL--- 57 +N + + L + + ++ L N+ L + VL Sbjct: 186 LNNAQKLENSLLQIANLTYKAKNLDVFFESLHLIINSLLPADNFF-IALYDKQIDVLDIV 244 Query: 58 --------GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVH-----VFDGHIACDAAS 104 KI+ ++ Q + + + Sbjct: 245 YIVEEGIKTNSHQKISKEQLKDTASYYLLV--TEQSLLLTNSEFLHHVEQQHFKMVGRRA 302 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLAT------TDYK 157 S + +P V ++ GV+ + S ++ D L + Q+ + +++ Sbjct: 303 ESWLGVPFRVNDRHSGVIVVQSYDKALHYSQHDNALLTYVSRQISMAIDRQLARQELEHR 362 Query: 158 KFFASVAG 165 + G Sbjct: 363 ALHDDLTG 370 >UniRef50_A3JMI9 Sensor protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JMI9_9RHOB Length = 448 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 14/134 (10%) Query: 45 AGFYLLED--DTLVLGPFQGK--------IACVRIPVGRGVCGTAVARNQVQRIEDVHVF 94 Y + + L G+ I ++I G G+ G + ++D+ Sbjct: 56 CVIYQADPSKNELTQVAALGEKNPFGRNIINPLKIQFGDGITGQVAENRKAVIVDDLLKD 115 Query: 95 DGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL--- 151 +IA + SEI +PLV+ ++++GV+D + F + L + A L Sbjct: 116 QNYIADTQLARSEICVPLVIGDRVVGVIDSEHPEPNAFGKAELDVLTTVAAMTSAKLELL 175 Query: 152 -ATTDYKKFFASVA 164 + K+ + +A Sbjct: 176 AESDRSKRRYHEIA 189 >UniRef50_B5YIS1 Hamp domain/gaf domain/hd domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YIS1_THEYD Length = 361 Score = 96.9 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 48/112 (42%), Gaps = 8/112 (7%) Query: 57 LGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLP 111 LG K+ +++ G+G+ G + I DV + + I LP Sbjct: 64 LGEKAEKVKMIKLKKGQGIAGWVAKHKEAVIINDVQKDPRFYKGADEKSGFKTKTMICLP 123 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +++K++++GV+ + F + D + LR L +Q+ + + + + + Sbjct: 124 VMIKDKVLGVIQAINKKNSLFNEYDLELLRALASQVAVAI---ENARLYEEL 172 >UniRef50_B9LCJ4 GAF sensor signal transduction histidine kinase n=3 Tax=Chloroflexus RepID=B9LCJ4_CHLSY Length = 731 Score = 96.5 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 7/164 (4%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED-DTLVLGPFQGKIACV 67 + ++ +L + + F L E+ + L+L G+ A Sbjct: 356 AVLNSIARIVTATLDLRESLPLATEQIQRGFGYPQVDLFLLEEEANELILVASAGRYAPE 415 Query: 68 RI----PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA--SNSEIVLPLVVKNQIIGV 121 R+ + G+ G A ++ R EDV ++ SE+ +PL+ + +GV Sbjct: 416 RVGYRQHINLGLVGRAARSGRIVRAEDVAAEADYLGLSERLDIRSELCVPLISNGKTLGV 475 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 L+I+S T+ED L + L + + A Sbjct: 476 LNIESPERAGLTEEDAAVLETVADMLAGAVENGRLYQRAQQAAA 519 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 54/159 (33%), Gaps = 9/159 (5%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIA-- 65 L + + L T L A L +TL++ + Sbjct: 187 EQLLAELGRAVGATLDLDTILHQTIDRLAAAFGSGLVA--LLDNQETLMVVAAAPPLDTL 244 Query: 66 -CVRIPVGRGVCGTAVARNQVQRIEDVHVF-DGHIACDAASNSEIVLPLVVKNQIIGVLD 123 ++P+ G V Q ++D + S I+ PL ++IG+L Sbjct: 245 IGRQLPLLSGSLAWVVQSGQPFVVDDCRLHAPDMALFGPDIASCIIAPLRSGGRVIGMLS 304 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 + S G F+DED L + AQ+ + + + +A Sbjct: 305 VVSRQAGVFSDEDVDLLEAIAAQVSGPVVSA---RLYAE 340 >UniRef50_D0E8I3 Sensor protein n=1 Tax=uncultured bacterium HF130_AEPn_1 RepID=D0E8I3_9BACT Length = 466 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 14/168 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV---LGP 59 K +L+ D L ++ + A L E D L L Sbjct: 33 KLNALQELSMDITGKDLETKKVQTILEEVISIF-----SGDKAAMMLAEGDYLYFAGLNG 87 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPLVVKN 116 + +IP+G G+ G + + D+ + S + +PL VK Sbjct: 88 VDNTESSGKIPIGEGISGKVFESKEPILVADLSKDPKFNERELEKFYHRSFMSVPLKVKG 147 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +++GVL++ S V F +ED Q Q + + F + Sbjct: 148 KLLGVLNVHSKVPNVFNEEDLQIFSTFAVQTATAIVN---NRLFFELQ 192 >UniRef50_A2EIP4 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2EIP4_TRIVA Length = 1334 Score = 96.1 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 14/167 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPFQ 61 L + +++G L +L +L++ + LV Sbjct: 392 ETRLKSLL-EVAEILSGVLDIDTLLPTIMNH-ATKLLSCERCSLFLVDAAHNELVTRFHG 449 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVK- 115 G +R+ +GRG+ G+ + I+D + +A + S + +P+ Sbjct: 450 GLSNAIRVKIGRGIVGSCAQSGDIVNIKDAYADSRFDRSVDLATGFTTRSLLCIPIENNR 509 Query: 116 NQIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +I GV ++ + G F D+D + L + D + + Sbjct: 510 GEITGVTEMINKLNDGLFDDDDIKMLLAFNVFCGISI---DNARLYK 553 >UniRef50_B0SC18 Transcriptional regulator n=7 Tax=Bacteria RepID=B0SC18_LEPBA Length = 705 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 7/158 (4%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF------QGKI 64 + M L + + + L+++ VL Q + Sbjct: 12 IHEVATAMNSTQDPDGLLELILDRCIQ-ICAVESGSLMLIDEKQSVLDAVTSRGMNQQLL 70 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 ++ +G+G+ G A + + + + DV +I SE+V P++V++ IIGV+ + Sbjct: 71 RETKLKIGQGITGMAASTGKAKLVNDVSKDPDYIQVKEEIKSELVAPMIVEDDIIGVISL 130 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 DS FT E + + L Q ++ + Sbjct: 131 DSNRLNAFTPEMLEIVSVLANQAGQIFKNLQTIRSLEQ 168 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 18/172 (10%), Positives = 50/172 (29%), Gaps = 25/172 (14%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL--- 57 + + + + +++ + + + L L + +L Sbjct: 166 LEQRTKIQATLIEISKVVSSTLDQNEVFDSIMVTMEKSLRLEKG-SIVLFNKEEALLRIV 224 Query: 58 ---GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI---------ACDAASN 105 G +I G G+ G + IE V + D + Sbjct: 225 AASGLSPEEIEKGTYQPGEGITGKVYESGEPIIIESVASHPDFLNRVGYLSHFKHDPHNV 284 Query: 106 SEIVLPLVVKNQIIGVLD---IDSTVFG--RFTDEDEQGLRQLVAQLEKVLA 152 S + P++ + +GV++ + + F L+ + + + + + Sbjct: 285 SLLCAPILSEQTTLGVVNAFIVQNKHTDLKSF----LDFLQVVASIISQSIK 332 >UniRef50_B3E3E2 Metal dependent phosphohydrolase n=2 Tax=Geobacter RepID=B3E3E2_GEOLS Length = 373 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 56/168 (33%), Gaps = 21/168 (12%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDI---NWAGFYLLED--DTLVLGPFQGKIA 65 + +L+ A L E + + A LL+ L G+ Sbjct: 19 LMELASLVNSSLDP----AEVRRLAVEAVPRCVGADAASLLLLDGATGELYFEAASGEKG 74 Query: 66 CV----RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKN 116 R+ G G+ G + ++DV + + + IV P+ K Sbjct: 75 RHLKEVRLKPGEGIAGWVARKGGAVIVDDVKHDPRFASDIDRFTGYDTRNMIVAPVATKE 134 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 ++ GVL + + V G F D + ++ L Q+ + + + + Sbjct: 135 KVWGVLQVLNKVTGDFNAHDLELVQALADQVAIAI---ENASMYQEMR 179 >UniRef50_C0QQ26 Metal dependent phosphohydrolase n=3 Tax=Bacteria RepID=C0QQ26_PERMH Length = 363 Score = 95.0 bits (235), Expect = 7e-19, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 57/158 (36%), Gaps = 9/158 (5%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK- 63 E + D+++ +A E L + L E + + +L +D L Sbjct: 2 ERKLKILLDYSSKIANEKDLRNVLLFLTDLAKEIMEA-DRCSIFLYDDQKKTLWTIVAHG 60 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKNQ- 117 + + I +G+ G ++ I D + + + + +PL + Q Sbjct: 61 VDRIEIDADKGIAGYVFRTGEILNIPDAYKDPRFDRDIDKRTGYRTRTILAVPLFDRKQN 120 Query: 118 IIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATT 154 IIGV + + + FT+ED + LR + + Sbjct: 121 IIGVFQVINKLTNSVFTEEDIELLRHISLYASSTIENA 158 >UniRef50_A2SP17 Transcriptional regulator, CdaR family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SP17_METPP Length = 659 Score = 94.6 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 66/172 (38%), Gaps = 18/172 (10%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M++ + + R + + + T+ LL + G +L + D LV+ Sbjct: 56 MDEIDSLQQVARRILSASELDEVLFSISRETARLLGADIG-----GVFLRDGDELVMRSC 110 Query: 61 QGK----IACVRIPVGRGVCGTAVARNQVQRIED------VHVFDGHIACDAASNSEIVL 110 G I +R+ G+G+ G + + +++D V + D + Sbjct: 111 VGNDTLDIDRLRMKRGQGLAGRVLETGRPCKVDDYLASDQVSRDYFWLVRDEQIRCAVGA 170 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 PL+ + +IGVL++ FTD+DE+ + L + + + S Sbjct: 171 PLLAREGVIGVLEVWRRRDVPFTDQDEKRVAALANLTAIAVQNA---RLYES 219 >UniRef50_A6RC53 Putative uncharacterized protein n=1 Tax=Ajellomyces capsulatus NAm1 RepID=A6RC53_AJECN Length = 133 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 67/129 (51%), Gaps = 25/129 (19%) Query: 24 FLATLANTSALLYERL-------TDINWAGFYLLED------------------DTLVLG 58 ++ LAN S+LL+ + +NWAGFY+ +D L+L Sbjct: 1 MVSNLANVSSLLWHAYAALPAPSSAVNWAGFYVRQDRFPSLVSAGSNTKETPGTQALLLD 60 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 PF GK AC I GRGVCGTA + + + DV ++GHIACDA S SEIV+P++V + Sbjct: 61 PFHGKPACQLIQFGRGVCGTAAEKQETVLVPDVFNWEGHIACDAESKSEIVVPILVNGES 120 Query: 119 IGVLDIDST 127 + + S Sbjct: 121 VNLWQHGSK 129 >UniRef50_D0LX99 Transcriptional regulator, NifA subfamily, Fis Family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LX99_HALO1 Length = 547 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 16/169 (9%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +++ E +L D A++A E L + E L + A +L++ T L Sbjct: 13 VSEGELKQELLSDLGAMIAREVELDELLKTFGLRVAEALGA-DRATLWLVDARTGELRSR 71 Query: 61 QG---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPL 112 ++ +R+P+GRGV G R +V I D + S + +P+ Sbjct: 72 VANLLELDELRMPIGRGVAGYVAQRAEVVNIRDAASDQRWAPEIDQRTGYRTRSMLCVPV 131 Query: 113 VVKN-------QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 V ++ GV+ + + G FT DE+ LR+L Q+ + LA T Sbjct: 132 VEPGDRGAAPDRLRGVVQVLNKDEGAFTQADERFLRELAQQITRALAYT 180 >UniRef50_C6VVW4 Signal transduction histidine kinase, LytS n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VVW4_DYAFD Length = 1192 Score = 94.2 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 12/159 (7%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ- 61 K E F + GE S + + +L + +L +DD L Sbjct: 796 KRE-LDKAIEYFVNSVYGENSVDEICWDIARNCCLQLRFED-CTVFLWDDDKQKLVRKAL 853 Query: 62 ---------GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPL 112 + + + +G G+ GTA + I D +IA DA+ SE+ +P+ Sbjct: 854 YGSKNITENETVDPLELELGMGIVGTAGKTKRAINISDTSRDPRYIAMDASKFSEVAVPI 913 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 + + ++IGVLD + + FT++ + L + + + Sbjct: 914 LHEGKLIGVLDSEHSEKRFFTEDHTRALVTIASINANKI 952 >UniRef50_A3HS12 Putative orphan protein ; putative GGDEF protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HS12_9SPHI Length = 399 Score = 94.2 bits (233), Expect = 2e-18, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 12/165 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED------DT 54 ++ E L N+++ ET L + + L + A YLL+D Sbjct: 9 ISPKEIEEILLHFSNSMVELETE-EEILWDMANNCISILGFED-AVIYLLDDKGEYLEQK 66 Query: 55 LVLGPFQGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 +GP I ++I VG G+ G A + ++D + +I D+ SEI + Sbjct: 67 AAIGPKNPNGTAIINTIKIKVGEGITGKVAATSLPIIVDDTRTNEDYIKDDSFRLSEIAV 126 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 P++++ ++IGV+D +++ F+D+ + L + + +A Sbjct: 127 PIMLEGKVIGVIDSENSQANYFSDQHLKILLAVASIYAGQIARIR 171 >UniRef50_A2U1J4 Sensor protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U1J4_9FLAO Length = 567 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 34/179 (18%), Positives = 60/179 (33%), Gaps = 18/179 (10%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 K +N +++ G+ + + L N YL+ DT L P Sbjct: 172 EKQLVLDLINDTAKSIL-GKEDVNEIAWEITNKITGYLNTDN-CVVYLINSDTKFLEPIA 229 Query: 62 GKIA-----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 ++ VG G+ G+ + I D + D +I+ S I +P++ Sbjct: 230 TYNTDKINDRPKLSVGEGILGSVAKSGISEIINDTSLEDRYISFGKEKLSIISVPIINDK 289 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT-----------DYKKFFASVA 164 +IIGV+D T F E L + + L + D + +A Sbjct: 290 EIIGVIDARHTQKDFFKPEQINTLESVANLVAMQLKSALNLIERKKAEKDNADLLSKLA 348 >UniRef50_Q1K190 PTSINtr with GAF domain, PtsP n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K190_DESAC Length = 770 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 62/155 (40%), Gaps = 11/155 (7%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG----KI 64 D +AL+ TL N +L+ R+ YLL++D TL L QG I Sbjct: 17 LEDISALILQSHDLNETLNNIVSLVARRMHSEV-CSIYLLDEDGETLWLRATQGLTQEAI 75 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVKNQIIG 120 V + +G G+ A+ + I + ++ + + + +PL+ + IG Sbjct: 76 GKVSMKLGEGLASMAIEQGHPISILEPEEHPRYLYFQETGEEQFHCFLAVPLMDRRNPIG 135 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 V+ + ST F+ + + + Q+ V+ Sbjct: 136 VITLQSTEKRAFSPTEISTMTTIAFQVSTVVTNAQ 170 >UniRef50_A9B3A2 Protein serine phosphatase with GAF(S) sensor(S) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B3A2_HERA2 Length = 995 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 11/153 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPFQ------ 61 +++R A++ L + + F E L Sbjct: 413 EVSRQVTAIL----DLDRLLPSVVHRIRVSFGYSQVHLFTFDELHQQLFFRASTASDSPF 468 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGV 121 + R+P+G G+ G + + DV + +E+ +P+ V Q++GV Sbjct: 469 WQRQGKRLPLGLGIVGHVAVTGEPMLVNDVREEPRFLPDQHGIAAELAVPMRVGQQLLGV 528 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 LD+ S +G F + D ++ L Q+ + + Sbjct: 529 LDVQSESYGAFDENDFFVVQTLADQIAIAIDSA 561 Score = 77.2 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 16/159 (10%) Query: 1 MNKTEFYADL-NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 +++ A+L L+ GETS + +N L+E E V Sbjct: 244 ISRAIIRAELDVDSLCQLVYGETSKVVDTSNFRLGLFEGR---------FFELKVRVQDG 294 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA------ASNSEIVLPLV 113 V +P RG+ + +ED + S + +PL+ Sbjct: 295 HHEPPLRVELPNDRGIVSWIRRTGRSLLVEDFDSEMDRLPAQPTYQAEYPPRSGVYIPLM 354 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 ++++G + I S+ F +D + L + Q + Sbjct: 355 TGDEVLGTISIQSSEPRAFDTDDLRLLSLIADQAAVAID 393 >UniRef50_A7NMZ1 Protein serine phosphatase with GAF(S) sensor(S) n=2 Tax=Roseiflexus RepID=A7NMZ1_ROSCS Length = 961 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 12/163 (7%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACV 67 AD R+ +++ S L L + + + A L E L + Sbjct: 551 ADTLREVARVLSAAFSSGEVLNVILRELKKVIPY-DSASIMLREGRVLRAAAVAPEHIAT 609 Query: 68 RIPVGR------GVCGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKNQII 119 R+ G V Q IEDV V + S I +PL+VK +++ Sbjct: 610 RLDAMDRPLNEPGAAVWVVHHKQPLLIEDVSVSHIWAPKPQISNIQSWIGVPLLVKGEVL 669 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 GVL+IDST GRFT D + + + + + +A Sbjct: 670 GVLNIDSTQKGRFTQRDVEVAQVFADNAAIAI---ENARLYAE 709 Score = 76.1 bits (186), Expect = 4e-13, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 59/166 (35%), Gaps = 10/166 (6%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLL-EDDTLVLGPFQGKIACV- 67 + +A + L +LL + L A L + L L G Sbjct: 214 MLTALAEELAFQRPLSELLDRALSLLVDHLAMSGGAVRLLSSDGAELTLAAAYGFPPAYA 273 Query: 68 ----RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLD 123 RIPV + + + + I+++ + S I +PL + ++ +G L Sbjct: 274 DQLARIPVASSLMRSVIEERRPLIIDNLAQSEHWQRLGLHYRSLIAVPLQIGDRALGSLL 333 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLAT----TDYKKFFASVAG 165 + T D++ + +R + Q+ + T + ++ A ++ Sbjct: 334 LVDTRQRAIQDQEIEFVRTVGHQIAIGIKTAQLLAERERQVAELSA 379 Score = 64.5 bits (156), Expect = 1e-09, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 54/159 (33%), Gaps = 15/159 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINW-AGFYLLEDDTLVLGPF---QGKIAC 66 D + + A L + + L + + Y E D + G + + Sbjct: 380 LSDISHAASTTLELRALLRHIARALARFMRADVFSVAVYDAERDVISDGFSIDDGEEHSF 439 Query: 67 VRI--PVGRGVCGTAVARNQVQRIEDVHVFDGH--------IACDAASNSEIVLPLV-VK 115 + P + + + R +++ G I D + S + +PL+ + Sbjct: 440 WQFQPPPSDSLTAWVLRNQRALRFDNLLDEIGRYPELRLHAIGTDRMALSWLGVPLIGRE 499 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 Q IGVL + + F D DE+ L + Q+ + Sbjct: 500 GQPIGVLTVQAYSPCAFDDRDERFLAAVARQVALHVQNV 538 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 8/83 (9%) Query: 80 VARNQVQRIEDVHVFD--------GHIACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGR 131 V Q D+ S S + PL++ + +GV+ I S G Sbjct: 106 VQHRQPLLFYDLLHERTLLTPPPERFGNQQKHSRSWMGTPLLLGYETVGVMSIQSYRPGI 165 Query: 132 FTDEDEQGLRQLVAQLEKVLATT 154 + + L+++ L L Sbjct: 166 YNQDHLDLLQRIGNLLAVALENA 188 >UniRef50_C5D1A1 Sensor protein n=1 Tax=Variovorax paradoxus S110 RepID=C5D1A1_VARPS Length = 699 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 56/170 (32%), Gaps = 12/170 (7%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV------ 56 + Y+D L L + A+ E L A LLE+ L Sbjct: 147 QRARYSDYLAQLGRLAVDTRDLQVVLDHVPAMAAEALEVEV-AVVLLLENSRLEFRVASG 205 Query: 57 LGPFQGKIACVRIPVGRG-VCGTAVARNQVQRIEDVHVFDGHIAC----DAASNSEIVLP 111 +G G+ RIP G A + + D DA S + +P Sbjct: 206 VGLVPGEEIGARIPSHANTPPGFVFAEGRPVVVADYGNERRFAVPQAYLDAGLVSALAVP 265 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 + + IGVL + S RF DE+ + L L L L ++ + Sbjct: 266 FYDRGRFIGVLAVRSREAKRFGDEELRFLESLSNLLATSLQRVQTEEALS 315 >UniRef50_B8E2Z6 Metal dependent phosphohydrolase n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2Z6_DICTD Length = 371 Score = 93.4 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 60/165 (36%), Gaps = 14/165 (8%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD------TL 55 NK + + L ++ + + L +L+ E L ++ LL+ + + Sbjct: 10 NKIKDLSLLLN-ISSKINSKLDIHELLDLIMSLVKENL-NVEACSLLLLDRNKEELYFEV 67 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVL 110 LG +I I VG G+ G V + + I + Sbjct: 68 ALGEKGEEIKRYSIKVGEGIAGKVAETGIPIIENRVETNPLFNPKFDFLTSFKTKALICV 127 Query: 111 PLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATT 154 PLV + +IIGV+++ + +FT D + L+ + Q + Sbjct: 128 PLVHQGEIIGVMEVINKKDNKKFTKSDLKLLQAISNQASIAIKNA 172 >UniRef50_B1ZF40 Signal transduction histidine kinase n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZF40_METPB Length = 929 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 57/160 (35%), Gaps = 9/160 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +++ E L R A+ A + A L + A + E + LV Sbjct: 176 LDQREV---LLRTQGAVAAADGDLDAILHALVEGVLTATPQAEGAVIEMREGEELVYRAT 232 Query: 61 QGKIA---CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPLVV 114 G +A +R+P+ + G + + + DVH + S I++P++ Sbjct: 233 AGTLADKRGLRLPLQGSLAGACLTGGEPLLVPDVHTDPRVVRDLVEVLRLRSCILVPVLR 292 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + GVL + S+ F + D + + LA Sbjct: 293 NGEAAGVLKLQSSRPSAFAEADLGSAQVFAGTVSSGLAQA 332 Score = 40.3 bits (93), Expect = 0.023, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 34/116 (29%), Gaps = 9/116 (7%) Query: 45 AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD--- 101 A L+ + G AC + VC A+ + I D+ A Sbjct: 50 ALVSLVAGNRQWFKARSGFPACQT-DLDASVCVHALREPDLLVIPDLTRDPRTRANPLVT 108 Query: 102 --AASNSEIVLPLVV-KNQIIGVLDI--DSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 PL Q++G L + + + + LR L Q+ L Sbjct: 109 GAPHLRFYAGAPLRTPSGQVLGSLCVIDHKPRPEGLSGREARSLRALAGQVMTQLE 164 >UniRef50_Q051Q5 Serine phosphatase RsbU, regulator of sigma subunit n=4 Tax=Leptospira RepID=Q051Q5_LEPBL Length = 936 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 65/168 (38%), Gaps = 16/168 (9%) Query: 3 KTEFYADLNRDF---NALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT----- 54 +T+ + L + + L+ L L + + LL+D Sbjct: 192 QTDRFDFLLTEIIRVSGLINKSLDLSQLLEAIM-LSSKSVFRTEACSVLLLDDTKEYLYF 250 Query: 55 -LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEI 108 VLG + ++ +R+PVG+GV G V + I D A + + + Sbjct: 251 HTVLGEKRDEVTRIRVPVGKGVAGMVVRDKKPMIINDATNDPRVYREVDKASHFVTRNIM 310 Query: 109 VLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTD 155 PL+V+ Q+IGV++ +T+ FT+ED + + T+ Sbjct: 311 AAPLLVEGQVIGVIEAINTIDRTSFTEEDLELFSSFSGTSALAIQKTE 358 >UniRef50_A3EWI4 Putative GAF sensor protein n=3 Tax=Leptospirillum RepID=A3EWI4_9BACT Length = 421 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 60/161 (37%), Gaps = 10/161 (6%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPFQ 61 K + + +A L + +T+ N + + + LV+ Q Sbjct: 193 KKARQIEALSQVSQSIASNRYLEEILHLIVT-VTAEMTNSNLCSIMIHDPEEGLVIRATQ 251 Query: 62 GKIACVR----IPVGRGVCGTAVARNQVQRIEDVHVFDGH----IACDAASNSEIVLPLV 113 R I +G + G ++EDV + +A S + +P++ Sbjct: 252 TLSQEYRNKPPIKIGESISGIVFRDATPIQVEDVQKDPRYSFKDLARKENLVSLLSVPMM 311 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +K++ IGV+++ ++ F+ ++ + L+ + Q T Sbjct: 312 IKSRAIGVINVYTSQPHLFSQDEIKVLQSVANQAAIAWENT 352 Score = 58.7 bits (141), Expect = 7e-08, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 57/149 (38%), Gaps = 12/149 (8%) Query: 17 LMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQG----KIACVRIP 70 +M + + TL L + L + A Y L+ + LVL + V + Sbjct: 38 MMHNDVALEETLGQALRLSRDILP-FDCAFIYFLDGEGHDLVLRATSNIYPHAVGQVVLR 96 Query: 71 VGRGVCGTAVARNQVQRIED-VHVFDGH----IACDAASNSEIVLPLVVKNQIIGVLDID 125 +G GV G I + + I + + + +PLVVK+ ++GV++ Sbjct: 97 MGEGVTGWVAREMSPVIISEKAWMDPRFKMFQIFEEEQYEAFLSVPLVVKDILLGVVNFQ 156 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +DED + + L +L V+ Sbjct: 157 FRKAYVPSDEDLELVTLLTQELSLVIHHL 185 >UniRef50_B5JLN9 Sensor protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JLN9_9BACT Length = 571 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 17/157 (10%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 + Y + L A + + ++ + ++LL LG + K Sbjct: 29 DAYMIITEQLQRLFAPKAAAISLINPNTSLLEI----------------EYALG-YPSKT 71 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 + + I G+G+ G A + DV ++ S+IV P++ IIGV+ + Sbjct: 72 SELGIHPGKGLSGRAAFNGEPILCNDVENDTRYVKLIEGVRSKIVAPMISSGHIIGVISV 131 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 D FT D L + + +VL + Y++ + Sbjct: 132 DRDTPNAFTQRDLNQLVYIADESSQVLQSVWYRRQLS 168 Score = 54.5 bits (130), Expect = 1e-06, Method: Composition-based stats. Identities = 24/173 (13%), Positives = 58/173 (33%), Gaps = 17/173 (9%) Query: 7 YADLNRDFNALMAGETSFLAT-----LANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 ++ + NAL+ + ++ L T LT L + T + Sbjct: 167 LSNQSEQLNALIEVGQNIVSNFETHSLWETVTEAAMELTRARLCTLQLFDSKTNKVKLLT 226 Query: 62 GKI-------ACVRIPVGRGVCGTAVARNQVQRIEDVHV----FDGHIACDAASNSEIVL 110 + I + + G+A+ + ++ + D+ S + Sbjct: 227 ARPLNDEYTRNVGEIDLSESLAGSAIRTKRQIEFNNITTPDYLDLKDVPRDSEVTSCLST 286 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD-YKKFFAS 162 P++ + + G+L++ + V RF + + + L+ + Y + F S Sbjct: 287 PMIYEGSVTGILNVFTKVRHRFPNSERRLLQAFADLAAVAAQNAELYNRVFNS 339 >UniRef50_A9FGA1 Sensor protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FGA1_SORC5 Length = 695 Score = 92.3 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 14/163 (8%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP---FQGKIACV 67 RD + LA + E L + A YLL++ L + + Sbjct: 33 LRDVGLALGSTLDLDQLLALILNKITELLDA-DRATLYLLDEQRQRLLSRIVIGEEARAI 91 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVK-NQIIGV 121 +PVG G+ G + R++D + + S + P+ + IGV Sbjct: 92 ELPVGAGIAGHVAKMGRTVRVKDAYRDRRFQRDWDEVTGYRTRSILAAPMKNHVGRTIGV 151 Query: 122 LDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + + + G F+ DE+ L L Q + D + F SV Sbjct: 152 IQVLNKHGEGEFSVHDEELLSALATQAAVSI---DNSRLFLSV 191 Score = 41.0 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 14/127 (11%) Query: 51 EDDTLVLGPFQ-GKIACVRIPVGRGVCGTAVARNQVQRI---------EDVHVFDGHIAC 100 E + +V+G + + + G GV G A+ N+ +D V Sbjct: 284 EPEGVVVGAAPRPAVKRIAMRRGEGVVGRAMVNNEAVCFSREGGSRDPDDTLVSPRLAQL 343 Query: 101 -DAASNSEIVLPLVVKNQI-IGVLDID-STVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 A + I +PL ++ + IG + + S F+ +D LR + A L Sbjct: 344 VGAELRTAIAVPLEGEDAVPIGSMALYNSRNPHGFSKDDRALLRLVSANASTAL-RLFRS 402 Query: 158 KFFASVA 164 + + Sbjct: 403 RLEREQS 409 >UniRef50_Q01Y41 Putative GAF sensor protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Y41_SOLUE Length = 409 Score = 92.3 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 20/174 (11%), Positives = 61/174 (35%), Gaps = 17/174 (9%) Query: 2 NKTEFYADLNRDFNALMAGETS---FLATLANTSALLYERLTDINWAGFYLLEDDTLVLG 58 ++E L G L + ++ ++L L++++ L Sbjct: 170 ERSERATRRMEALAGLAEGINEKNYLDRILQTIAEMVADKLDSPV-CSIMLVDEERQELN 228 Query: 59 ------PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH----IACDAASNSEI 108 + + + + + + G V Q I +V + +A S + Sbjct: 229 ISAARCSSEDYLHRMPLKIEESLIGRVVRERQPIMIPNVLEEKQYRYPELARKTGLASLL 288 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +P+ ++ +IG ++I + +F +++ ++ + +Q + + + + Sbjct: 289 SVPMFTRDTVIGTINIYTREVHQFAEDEIDFVKVVASQAAIAI---ENARLMSE 339 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 66/175 (37%), Gaps = 19/175 (10%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLG----PFQG 62 +L + +++ S L L E +TD + YLL+ +VL P Sbjct: 11 ELLHQISNIVSSNLSLEKMLQELIGLAVE-VTDCDACLVYLLDRHRKEIVLRASKLPHAK 69 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRI-EDVHVFDGHIAC----DAASNSEIVLPLVVKNQ 117 +I +R+ +G G+ G V + + + + + + +PLV + Sbjct: 70 EIGHIRMKMGEGITGWVAQNKSVVALGANAAADPRFKSFQKLPEDTYQAFLSVPLVNAGE 129 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYK-------KFFASVAG 165 +IGV++I + ++ + + Q+ +A + + ++AG Sbjct: 130 LIGVINIHHETKHPHSQDEVALVSFMGEQMGGAIAKSRLAERSERATRRMEALAG 184 >UniRef50_C9R7N3 Metal dependent phosphohydrolase n=1 Tax=Ammonifex degensii KC4 RepID=C9R7N3_AMMDK Length = 719 Score = 92.3 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 18/170 (10%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG 62 E ++ + ++ + + + LA+ LL + W LL+++ LVL G Sbjct: 340 ERLIEVGQVLSSHLDVDQVLESVLASVRDLLGAQ-----WCLLRLLDEETGELVLRASLG 394 Query: 63 -----KIACVRIPVGRGVCGTAVARNQVQRIEDVHV---FDGHIACDAASNSEIVLPLVV 114 + VR+ + G + + + D+ A S I +P+ V Sbjct: 395 ISPELQKEIVRVRPEGNLLGKVLQTGKPVIVGDLATSEPDMRPPHYAAEMRSLISVPVRV 454 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +I+G L + + +E+ L + +Q L + + ++S+ Sbjct: 455 GKKILGTLTVCHPTPHHWKEEEVGYLATIASQTGLAL---ENARLYSSLR 501 Score = 48.0 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 101 DAASNSEIVLPLVVKNQIIGVLDI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 + +PL V ++ GVL + RFT+E+ L L L L + Sbjct: 272 SEEKRPAVAVPLTVGGKVTGVLTLAGKPGGQRFTEEEATFLATLGTVLGLALENARLFQK 331 Query: 160 FASVAG 165 A Sbjct: 332 VQERAA 337 >UniRef50_D0LGB0 Sensor protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LGB0_HALO1 Length = 602 Score = 92.3 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 14/166 (8%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ---GKI 64 + L R+ M+ L + + + + + Y+L DD L + Sbjct: 19 SALVREVWRAMSSGQELDQLLTLIMDKVTQLMEA-DRSTLYVLSDDGETLWSKVLQGDEF 77 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVV-KNQI 118 + +R+ VG G+ G A A ++ I D + + I + S + P+ K++I Sbjct: 78 SEIRLKVGEGIAGWAAASGELVNIPDAYSDERFQPAVDIKSGYRTRSILCAPMRNSKSEI 137 Query: 119 IGVLDIDSTVF-GRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +GVL + + G FT +D + L L +Q + + K + SV Sbjct: 138 VGVLQVLNKQAGGPFTVDDAELLTALASQAGL---SVENSKLYHSV 180 Score = 74.9 bits (183), Expect = 9e-13, Method: Composition-based stats. Identities = 29/168 (17%), Positives = 63/168 (37%), Gaps = 22/168 (13%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE---DDTLVL------GP 59 ++ + LM + L N A + + L + +++ VL GP Sbjct: 202 NVLYEIEKLMNADLGLGQLLENVLAEAMQTVGAKAGT-IALRDTEAENSNVLEFLTFAGP 260 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNS-----EIVLPLVV 114 ++ +P+G GV G +VA +Q + D + H + A + PL Sbjct: 261 VATELEHRTLPMGEGVLGWSVAHDQPVIVNDPRADERHASAFAEELGFMPAHLVCAPLRS 320 Query: 115 KNQIIGVLDIDST-------VFGRFTDEDEQGLRQLVAQLEKVLATTD 155 ++++G +++ F++ED + + + Q K ++ Sbjct: 321 GDEVLGGIELIDKVSRDSDADAAGFSEEDLKLVVLIAGQAAKAISLAR 368 >UniRef50_B3E4M8 Putative GAF sensor protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E4M8_GEOLS Length = 182 Score = 92.3 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 12/157 (7%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE------DDTLVLGPFQGKIAC 66 + AL+ + + + LL+ D +V G + + Sbjct: 19 EMAALVNSSHERSVIMDHAVKSVCRLTGAEAG-SLLLLDEFTGHLDFEVVTGGREELLPF 77 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKNQIIGV 121 R+P G+G+ G + ++DV + + I +PL V +IGV Sbjct: 78 FRVPKGQGIAGWVAQNDLPIIVQDVQSDERFFKFTDQELGFTTRDMIAVPLRVNGTVIGV 137 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 L + G F +D + Q+ ++ TD ++ Sbjct: 138 LQAINKNSGSFNHDDLKLAMAFANQIASIINKTDKEQ 174 >UniRef50_B0WPM1 cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A n=9 Tax=Metazoa RepID=B0WPM1_CULQU Length = 776 Score = 92.3 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 28/188 (14%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + + + L ++ S ++ +RL D + A +L++ + L Sbjct: 254 LKQRKLNDFLLAVVKSIFQDMVSMEMLVSKIMNF-AQRLVDADRASLFLVDSKSKELYAT 312 Query: 61 -------------------QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD 101 +R P+G G+ G +V I D + Sbjct: 313 IFDVGCDSKATKTENETDPSKAPNEIRFPLGTGIAGQVALTGEVLNIVDAYADTRFNRSI 372 Query: 102 A-----ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 + S + +P+ ++ +IGV+ + + G F EDE+ L + Sbjct: 373 DQLTGYKTESILCMPIFIRGSVIGVVQMVNKRTGCFNKEDEEAFEMFAVYCGLALH---H 429 Query: 157 KKFFASVA 164 K + + Sbjct: 430 AKLYDKIR 437 >UniRef50_D1CEK7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Bacteria RepID=D1CEK7_THET1 Length = 1785 Score = 92.3 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 16/175 (9%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 +++ + + + + + S L + L D + +L D+ LV Sbjct: 331 VSRADRL-RVIQSIASRLNRLNDVRKIAKAISEELRQ-LVDFHACRIFLASDEYLVPAAV 388 Query: 61 --------QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH---IACDAASNSEIV 109 ++ +R+ G G+ G + + D + S + Sbjct: 389 ITDHSEYSPEEVDNLRVGFGEGITGWVAQHGEPALLHDAAKDTRTRLIPGTNDIDESMLA 448 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +P+ ++++GV+ + +F +ED Q L L Q + + K ++ Sbjct: 449 VPIKYDDRVVGVITLSKVGLNQFDNEDLQLLVILADQAAIAI---ENAKLVEKLS 500 Score = 69.1 bits (168), Expect = 4e-11, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 20/175 (11%) Query: 1 MNKTEFYADLNRDFN----ALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV 56 + + Y + + F L + L E YL +DDT Sbjct: 884 LRRQNVYLSALHEIALATMRRLDPSDVFRTLLTRAAPLFNEENGF-----VYLEDDDTSK 938 Query: 57 LGPFQGK-----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA--SNSEIV 109 L + G + G GV G + ++D + ++ + Sbjct: 939 LRLWVGTGVFTDYENTWLEPGEGVSGRVWRTGKPVILKDYISWPHRARMFDELVFHAVMA 998 Query: 110 LPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +P+ + + +G L S T F+++D L +L L + + + + Sbjct: 999 VPIFLNGRSVGSLGFVSFTQGKVFSEDDLHLLHRLADLASIAL---ENSRLYQQL 1050 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 47/153 (30%), Gaps = 16/153 (10%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGPFQGKIACVRIPVG 72 L E + L + + + L A +++ TLVL G P G Sbjct: 1077 LGQLALAEDDQDSLLRKAADTVADVLDVEYSAILRDVDNGKTLVLEAGHG------WPEG 1130 Query: 73 R-GVCGTAVARNQVQRIEDVHVFD------GHIACDAASNSEIVLPLVVKNQIIGVLDID 125 G TA D F+ ++ S I + + ++ G+L Sbjct: 1131 VIGSRLTAAREGHPP-TPDKASFNIYPPEIRYLQS-GVIRSAISVGIGGQSSPYGLLCAY 1188 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 S F+ +D L+ + L + + Sbjct: 1189 SLEPRIFSPDDINFLQSVSNILAAAIEYRRAAQ 1221 >UniRef50_A2E5S0 GAF domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2E5S0_TRIVA Length = 1275 Score = 92.3 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 63/160 (39%), Gaps = 11/160 (6%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF--Q 61 + A L + +L + ET+ ++ + ++ + A ++L+D L Sbjct: 614 QDRLAALLQVAESL-SRETNIDTLVSQILVKACQLVSA-DRASLFVLDDSKNNLISKVAH 671 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKN 116 G +PVG+G+ GT + I D + + + S + +P+ + Sbjct: 672 GTDKPFVLPVGQGIVGTVARTGETINIPDCYEDSRFNSAIDKKTGYRTKSMMTIPVHDQR 731 Query: 117 Q-IIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATT 154 IIGV+ + + G F+D D + + + LA + Sbjct: 732 HSIIGVVQLMNKQNGEAFSDADVELTKAMCVFTGIALANS 771 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 62/168 (36%), Gaps = 15/168 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ-- 61 ++ + + + L GE + L + + + + + ++L+ ++ L Sbjct: 781 SQRVQAMLKTVSMLTHGE-ALSGLLHHIMSTSRDLIDA-DRCSLFILDTNSSKLSSTVSD 838 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVK- 115 G+ A + I G+G+ G + + I D + + S + +P+ Sbjct: 839 GQKAGIEITKGKGIAGYVAEKGESLNIPDAYKDPRFHRGVDNDTGYRTRSILAVPIKNNS 898 Query: 116 NQIIGVLDIDSTVF----GRFTDEDEQGLRQLVAQLEKVLA-TTDYKK 158 N+ IGV+++ + G FT EDE+ +D + Sbjct: 899 NETIGVVELINKDIIKNGGVFTKEDEKLTSGFATFAGVAFDQHSDNNR 946 Score = 52.2 bits (124), Expect = 5e-06, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF---QGKI 64 L + +A + + + + ++ L + Y ++ L F +I Sbjct: 446 EKLYKIIAKFVANQFNLFKLIQSITSYL-SGMLQCETTQIY-FDEGKDRLYSFDIKHTQI 503 Query: 65 ACVRIPVGR-GVCGTAVARNQVQRIEDVHVFDGH---IACDAASNSEIVLPLVVKNQIIG 120 +P+ + G+ G + ++ + + + I + I +PL+ + Sbjct: 504 QKTTVPLKKAGIAGYIFEKKELVNASNASLHPSYFSNIDGAFGTRPIIGIPLITGDTCFA 563 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 V+ FT +D L L + L Sbjct: 564 VIVCRGKQGLCFTTDDVNTLTFLSSGAAPALQ 595 >UniRef50_B8G9Y3 Adenylate/guanylate cyclase with GAF sensor(S) n=5 Tax=Chloroflexaceae RepID=B8G9Y3_CHLAD Length = 981 Score = 92.3 bits (228), Expect = 6e-18, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 13/167 (7%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 + E + + N L++ +L+ + A L + + LV+ G Sbjct: 306 RAEELRQI-NEINQLLSELMQIDQLGRLLVQMLHHQFGYPLVALV-LRQAEQLVVQSVAG 363 Query: 63 ----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC---DAASNSEIVLPLVV- 114 + V I G+ G + RI+DV I C +A S + +P+++ Sbjct: 364 TQQFETGKVVIGAESGISGWVCRNRKPLRIDDVTQDARFIPCLPDEARMRSALSVPVLLP 423 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 + ++G +++ S F+ DE + + QL + + FA Sbjct: 424 REGVVGTIELRSPQLAAFSPNDEAIVSAIANQLAIAIYNA---RLFA 467 Score = 78.8 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 59/162 (36%), Gaps = 8/162 (4%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 KTE L+RD + + + L + + + I GF +D ++L Sbjct: 137 KTELLLHLSRDLGSSIDLDVLLTGFLNHLADAVGAVRASIILTGF---VEDKILLYSSSR 193 Query: 63 KIACVRIP--VGRGVCGTAVARNQVQRIEDVHVFDGHIACDA---ASNSEIVLPLVVKNQ 117 A + V GV G A+ I D + + S + +P++ N+ Sbjct: 194 YPAVAELQDIVRYGVAGLALRERSPILIADTRLDQRWLVTSPVHNDVRSVVAMPIIRDNR 253 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKF 159 + GV+ + G FT E + L + AQ L + + Sbjct: 254 VWGVITLVHHTPGYFTSEHLELLASVAAQSAVALESARLYRL 295 Score = 41.8 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 19/159 (11%), Positives = 46/159 (28%), Gaps = 11/159 (6%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWA-GFYLLEDDTLVLGPFQGKIAC--- 66 + + + + L T + A + ++ V+ Sbjct: 479 INRLSLALTAQFTAPDNLQRTVEAVAHIFQVDQAAMVLFGIQPSETVVVMSGPASPHDND 538 Query: 67 --VRIPVGRGVCGTAVARNQVQRIEDVHVFD-----GHIACDAASNSEIVLPLVVKNQII 119 + + Q Q+ D+ D S +++PL+V Q Sbjct: 539 LINFVSNHALLATYVAKLAQPQQYTDLDAHDILAPLRAFFAARGIRSIVIVPLIVTGQAQ 598 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 G+L +D T G + + + + + ++L + Sbjct: 599 GILALDITRRGVLEKTELEMASTVASLIVQILENARLYR 637 >UniRef50_A9KD89 GGDEF family protein n=6 Tax=Coxiella burnetii RepID=A9KD89_COXBN Length = 332 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 30/163 (18%), Positives = 55/163 (33%), Gaps = 11/163 (6%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGPFQ 61 + + L + L+ + + T NW+ Y DD L + Sbjct: 5 QQKKLQLLFSHISELIISPYKVDTVIEKIMEEVENFFTPTNWSLLRYDSVDDELFFVYAK 64 Query: 62 G----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAASNSEIVLPL 112 G I +R+ G G+ GT + I D + + S I +P+ Sbjct: 65 GLDEEIIKGIRLKRGEGIAGTVAETGKSLFIRDCQNDPRFSKKVDRSFKQKTRSIIAVPI 124 Query: 113 VVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATT 154 K+ ++GVL++ + F++ED L + L Sbjct: 125 KFKDVLLGVLELVNLENNVYFSEEDCFLLEIVANFSAVALINA 167 >UniRef50_A2DG30 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DG30_TRIVA Length = 1090 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF--QGKI 64 D+ + ++ +T + + LL +L+ + L + G Sbjct: 346 LLDVAEQLSGVLDIDTLIPMIMQRSCDLLEAE-----RCSLFLVNNTQTELISYFHAGLT 400 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVK-NQI 118 +RIP+ G+ G ++Q + + + + + + I +P+ +I Sbjct: 401 TEIRIPINTGIVGVTATTGEIQVVNNAYEDPRFDSSVDKKTGFKTRNIITVPIFNNRGEI 460 Query: 119 IGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 GV ++ + FT++D LR L D + + Sbjct: 461 AGVTELMNKITSDAFTEDDVSLLRGFNVFCGIAL---DNSRLYQ 501 >UniRef50_D1C2G1 Signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2G1_SPHTD Length = 652 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 64/164 (39%), Gaps = 16/164 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQG----KI 64 N A L ++ + + + +L + TLVL G ++ Sbjct: 119 LHRINQAATASLDLEAMLQTVVNVVKQTVAA-DSCSIFLYDQTSGTLVLRATVGLNQEEV 177 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPLVVK--NQI 118 +R+P+G G+ G A A ++ + + ++ D S++ +PL + +++ Sbjct: 178 GQLRLPLGVGITGEAAATRRILAVAEARSHPAYLDHPRIGDQIYTSQVSVPLALGAPDRL 237 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +GVL+I S F ++ L ++ + + + ++ Sbjct: 238 VGVLNILSAARREFDADELAFLETAAGEIAIAI---ENARLYSE 278 Score = 38.7 bits (89), Expect = 0.073, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 40/158 (25%), Gaps = 18/158 (11%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLL---EDDTLVLGPFQGKIACV 67 + + ++A L S E L+ A Y + L L Sbjct: 293 LQQMSRMVASTLDLSEVLRLISRQTAE-LSQATAAEIYRRPRHDPARLELMARHPSDDVA 351 Query: 68 RIP---VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 + V V A+ + + S V+P+V + +G + + Sbjct: 352 PVADRAVVVPVVEEAMQTGAAI--------WRRLPAEEPSTFLYVVPMVTARRAVGAICV 403 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 + + + L + + + Sbjct: 404 YLGERPQDVQDMQGLLDAFSDSAAIAIENAE---LYEE 438 >UniRef50_Q1IM31 Serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IM31_ACIBL Length = 612 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 57/160 (35%), Gaps = 11/160 (6%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG---KIA 65 L + L+ L + + + +L++ L + Sbjct: 180 SLLFEATRLLNSTLDLAELLELIMKIARTEVKA-DRGSVFLVDKAHKELWSIVASGLEHQ 238 Query: 66 CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKN-QII 119 +R+P GRGV G +V + D + + S + LP+ N +I+ Sbjct: 239 ELRVPFGRGVAGRVAETGEVINVADAYTLPFFDRSFDQKTGYTTKSLLCLPIRHHNNEIV 298 Query: 120 GVLDIDSTVF-GRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 GVL + + GRFT ED++ L +L + L + Sbjct: 299 GVLQLLNQSTHGRFTPEDQEFLTKLTGHMAMALENARLHR 338 >UniRef50_A3WDP1 Adenylate/Guanylate Cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WDP1_9SPHN Length = 767 Score = 91.9 bits (227), Expect = 7e-18, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 56/156 (35%), Gaps = 13/156 (8%) Query: 18 MAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK---IACVRIPVGRG 74 M E L + D + ++ ++ T L G+ +R+P G Sbjct: 205 MTSELELTTLLRRVMTE-ATSMLDAERSTLFINDEKTAELFSHVGEGLDAMEIRLPNHLG 263 Query: 75 VCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVK-NQIIGVLDIDSTV 128 + G+ + I + + S + +P+V K + IGV + + Sbjct: 264 IAGSVFTSGEAINIPHAYTDLRFNPAFDKQSGFFTRSILCVPVVNKSGETIGVTQVLNKR 323 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 G F +EDE L+ AQ+ L + K FA + Sbjct: 324 GGPFNEEDESRLKAFTAQIAIGL---ENAKLFADIQ 356 Score = 73.8 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 58/173 (33%), Gaps = 12/173 (6%) Query: 1 MNKTEFYADL--NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLV 56 + + + L D + +A + A L + E +L + L Sbjct: 19 LTQAQRLKQLQMILDVSRQVASLETLDAVLDTLVTVAVETTGAERG-SLFLHDASSGELY 77 Query: 57 LGPFQG-KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVL 110 QG K +RI G+ GT + I D + A + S + Sbjct: 78 SRIAQGMKRREIRILDTIGIAGTTFQSGEGLIIHDPYTDPRFNKDVDAQTGFTTTSILAS 137 Query: 111 PLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 P+ + + IGV + + V G F ++D Q L + +Q L + + Sbjct: 138 PIRNARGETIGVAQVLNKVAGEFNEQDLQVLEGITSQCAITLESMQLVERMED 190 >UniRef50_Q74E48 Conserved domain protein n=4 Tax=Geobacter RepID=Q74E48_GEOSL Length = 245 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 15/162 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK----IAC 66 + + L++ + L + +A + +L YL E D +VL G I Sbjct: 81 LEEISMLVSSDFDLPEVLQHVTAKVATQLKVSV-CNIYLREGDEVVLAATHGFDPAFIGK 139 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC----DAASNSEIVLPLVVKNQIIGVL 122 +RI +G G+ G+ Q + + + NS + P+ K ++ GV+ Sbjct: 140 IRIKIGDGITGSVARDGQYISLSRASQDPRYRYFPELQEEKYNSMLSFPIGDKKEVYGVI 199 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 ++++T F +++ + + + + K VA Sbjct: 200 NLNTTSIRSFHEDEIYFVSIIANLILTAI------KLRQQVA 235 >UniRef50_C6E9C6 Diguanylate cyclase with GAF sensor n=4 Tax=Geobacter RepID=C6E9C6_GEOSM Length = 713 Score = 91.5 bits (226), Expect = 8e-18, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 23/170 (13%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K E Y + L+ S +L ++ F LG Sbjct: 360 SKDELYQAILEIAAELIDAT--------QGSVMLIDKDGQNMHIVF--------TLGMTL 403 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPLVVKNQI 118 C+ + VG+G+ G Q I DV + S I +PL +K++I Sbjct: 404 NVARCLPVKVGKGIAGMVAQSGQPLLINDVEKDSRVAMANRLRFKSKSLICMPLKLKDKI 463 Query: 119 IGVLDI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATT---DYKKFFASVA 164 IGVL++ D FTD D Q L ++ T + + F ++ Sbjct: 464 IGVLNLSDKKNLAPFTDADLQVLTSFANLASLMIERTEVLEESERFEQLS 513 >UniRef50_C1F1G0 GGDEF domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1G0_ACIC5 Length = 365 Score = 91.5 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 23/155 (14%), Positives = 50/155 (32%), Gaps = 10/155 (6%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL------GPFQGK 63 + + + + L + + W +L++ T L G + Sbjct: 31 VFHNLARALTSSLELDSVLHAIMEQMRQFFEPETW-SLLILDETTQELYYAVAVGQSEAA 89 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA---CDAASNSEIVLPLVVKNQIIG 120 + VR+P+G G+ G + + D+ A S I +PL+ + + +G Sbjct: 90 LRNVRVPLGEGMAGWVAQHGESLIVPDLEQDPRFAATSDARTPMRSAICMPLLSRQRTLG 149 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 V+ + + T+ L L + Sbjct: 150 VIQLFNCRLESMTEYTISFLHILCDYAAIAIENAR 184 >UniRef50_A9B7C8 GAF sensor signal transduction histidine kinase n=3 Tax=Chloroflexi (class) RepID=A9B7C8_HERA2 Length = 548 Score = 91.5 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 57/165 (34%), Gaps = 12/165 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-----K 63 +L + +A + + L + + + A L+++ L + Sbjct: 162 NLLYQVSQSIASDIDLRSLLRTIIEKVTQIVDS-ESASLLLVDEVHKELYFETPSNNSQE 220 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-----CDAASNSEIVLPLVVKNQI 118 + R+P+ +G G V Q ++D + + + +P+ + + Sbjct: 221 LRSYRMPMDQGFAGWVVTHGQGLIVDDPQNDARFYRQVDSDISHQTRNILTVPVRSRERT 280 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD-YKKFFAS 162 +GV+ + G FT+ D + L L Q + + Y K Sbjct: 281 VGVIQAVNKRNGPFTEHDLRTLSMLANQAAISIENANLYTKLKEE 325 >UniRef50_Q5SJL9 GGDEF domain protein n=4 Tax=Thermaceae RepID=Q5SJL9_THET8 Length = 750 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 8/160 (5%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 L + + + L + L L + G ++ E L L + ++ Sbjct: 107 RLLAEALEALPKAQNREELLKSLPERLAR-LGERGHVGVWVPEGQGLRLLAARPPLSVET 165 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-CDAASNSEIVLPLVVKNQIIGVLDIDST 127 IP G GV G A + + DV +IA D + +E+ LPL + +++ VL+++ Sbjct: 166 IPYG-GVVGRAYREGRPVYVPDVRRDPDYIAPPDHKALAELALPLRERGEVVAVLNLERD 224 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATT---DYKKFFASVA 164 F +E ++GL++ + L+ + ++ A ++ Sbjct: 225 RP--FPEELQEGLKRFAQAVSLQLSRLADEEERRLVAELS 262 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 22/187 (11%), Positives = 53/187 (28%), Gaps = 25/187 (13%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + + + +NR F L+ E ++ + ED Sbjct: 411 LTEKARHEAVNRIFLELL--EKPPEELYQAVLEEAIRQVPGAEAGSLLVWEDGAYRYKAA 468 Query: 61 QGK-------IACVRIPVGR--GVCGTAVARNQVQR-------IEDVHVFD------GHI 98 G +A R + G+ + + + I ++ Sbjct: 469 FGYDLEGLKALAFTREAQLKWYGLGEEKARQGEPRLLSVEERPIAEISHETAPPEVIDAA 528 Query: 99 ACDAASNSEIVLPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYK 157 + + LP+ K +++ L++++ F ++ + R L +L + Sbjct: 529 GKAEEIQANLCLPIPYKGEVLAYLNLENLHDPKAFGEDSLEAARFFATPLATLLHEIRTR 588 Query: 158 KFFASVA 164 K A Sbjct: 589 KLLEEAA 595 >UniRef50_Q24GJ8 GAF domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24GJ8_TETTH Length = 744 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 24/160 (15%), Positives = 57/160 (35%), Gaps = 13/160 (8%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERL---TDINWAGFYLLEDDTLVLGPF-- 60 L + A S + L + + + + + Y++++ L Sbjct: 358 LLIRLKKIIRASFEMTKSLV--LNDALETIVDETCICLECDRCTVYVVDEKKNELWSKMA 415 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVV- 114 +G +R+P+ +G+ G Q I + + + S + + +P++ Sbjct: 416 KGTKNVIRMPINQGIAGFVATTKQTLNILNAYADERFNKDFDKKMNYKSRTILCVPIIDE 475 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 +++G + + + G FT +DE L + VL Sbjct: 476 HGRVLGAIQCINKLNGHFTKDDEALLMVIADFSRIVLKNA 515 >UniRef50_O27644 Sensory transduction regulatory protein n=1 Tax=Methanothermobacter thermautotrophicus str. Delta H RepID=O27644_METTH Length = 434 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 58/178 (32%), Gaps = 16/178 (8%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDDT----- 54 + K + D N + L ++ E + W G +++ Sbjct: 137 IKKLNRNLRMLSDCNQAIVRINDPEKLLREVCRIIVEVGGYRMAWIGLAENDEERSVRPV 196 Query: 55 LVLGPFQGKIACVRIP-----VGRGVCGTAVARNQVQRIEDVHVFDGHI-----ACDAAS 104 G +G + V I G G G ++ + I D A + Sbjct: 197 AEYGFHEGYLDSVTIRWDDSVYGEGPTGRSIREGEPVIIRDTGEDPRFTPWRDRAVERGF 256 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 S I LPL VK + IG L + S F +E+ + L +L + + + + K Sbjct: 257 MSVIGLPLTVKGETIGALTVYSGERDAFDEEEVKLLMELAGDVSFYIESREILKEMEE 314 >UniRef50_B4D6Y4 Protein serine phosphatase with GAF(S) sensor(S) n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6Y4_9BACT Length = 425 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 16/177 (9%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD-TLVLGP 59 + + + +AL+ T L + R+ ++ A +L+ D L L Sbjct: 8 LERQLKLYKGLVEVSALINAITESSELLPAILE-VARRVMEVEAASLFLVNGDGELELTY 66 Query: 60 FQGKI--------ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNS 106 G I A + +P GRG+ G + + + D + + S Sbjct: 67 ASGGIMAGTSAPEARIVVPRGRGIAGWVLEHGEALLVPDAYADPRFFKDTDRQTGFRTRS 126 Query: 107 EIVLPLVVKNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 + P+ K + IGVL + + + F ++D R + + Sbjct: 127 ILCAPMQRKGKEIGVLQVLNPIGREAFDEDDLAAFRAYGDLAATAIDKLRTIERQQE 183 >UniRef50_A9AVU3 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AVU3_HERA2 Length = 885 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + E + R + + + L LL + T G L++ L F Sbjct: 358 TRAESMYQIVRALSGTLEPQPLLDQAL-----LLIAQATQAERGGIMLIDHKNGRL-AFS 411 Query: 62 GKIACV-------RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA---CDAASNSEIVLP 111 + + G+G+ G V I + + D S + +P Sbjct: 412 TNLDRNITRTEAISLERGQGLAGWVVEHRAPVIIPNTAEDSRWMVRTDYDKKGRSALAVP 471 Query: 112 LVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 + ++ GV+ + ++ FT E Q ++ + Q+ +L+ + A Sbjct: 472 MEQDGRVAGVIVLINSRINHFTQEHIQFVQVIGDQVMTMLSNVQLYRATTEQA 524 >UniRef50_C7RAL6 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAL6_KANKD Length = 1012 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 8/150 (5%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVLGPF--QGKIACV 67 + +A L ++ +L + A F Y L+ + QG Sbjct: 14 IQQLAVSIAKADDLQGMLDRIVEHIFSQLESFDCALFLYEASHQDLICYSYRKQGISEKE 73 Query: 68 RIPV-----GRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + G G+ G Q R++D + + SE+ +P+V+ +++IGV+ Sbjct: 74 SFKLKPVKLGSGIIGYTAKNRQTMRVDDTDQSKVFVQDLQKNYSELCVPIVLNDELIGVI 133 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 D++ FT +D + + + + + ++ Sbjct: 134 DMEHPDKAFFTKQDARYVETIASMVAYLIK 163 >UniRef50_A2DF08 3'5'-cyclic nucleotide phosphodiesterase family protein n=2 Tax=Trichomonas vaginalis RepID=A2DF08_TRIVA Length = 1040 Score = 90.7 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 14/169 (8%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGP 59 + + L L +G + + L +L++ LV Sbjct: 335 DFEQRLKALLDIAQNL-SGTLDIDVLIPTIMDRAIQLLKS-ERCSLFLVDQTKQELVTHF 392 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVV 114 G +R+P+ RG+ G + IED ++ + + S + LP+ Sbjct: 393 HGGLDTEIRMPMNRGIVGHCAMTGETVNIEDAYLDSRFDKTVDLKTGYRTKSILCLPIYN 452 Query: 115 K-NQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +I GV ++ + + +F +D + L L D K + Sbjct: 453 NRGEIAGVTEMINKIGSDKFDADDIKMLMAFNVFCGISL---DNAKLYQ 498 >UniRef50_Q1D5E1 Sigma-54 dependent transcriptional regulator, Fis family n=4 Tax=Myxococcales RepID=Q1D5E1_MYXXD Length = 529 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 14/167 (8%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL---GPFQGKI 64 + + F L+ E A L + L +LL+ L ++ Sbjct: 28 SQVLLPFGGLVGREVDLDAFLQTLMDRIAITLQADRGT-LWLLDPARRELFSRAAHLPEV 86 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVV-KNQI 118 + +R+ +G+GV GT + D A + S + +PL + Sbjct: 87 SQIRVKLGQGVAGTVAKAGHAINVPDPRGEQRFFADIDRMTGYRTTSLLAVPLRDGDGAL 146 Query: 119 IGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 GVL + + RFTDED Q L + +Q+ L +T + + Sbjct: 147 YGVLQVLNRRGEDRFTDEDTQRLTAIASQVSTALQST---SLYQELQ 190 >UniRef50_Q2SHY3 FOG: GGDEF domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHY3_HAHCH Length = 658 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 52/160 (32%), Gaps = 8/160 (5%) Query: 1 MNKT-EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 + K E + L E A + + + LT A L+E D +V Sbjct: 159 LEKATEKLNQIVETQFHLSQAEIDMAAFMQLVTDKML-TLTPATGAVIELMEGDEMVYQA 217 Query: 60 FQGKIACV---RIPVGRGVCGTAVARNQVQRIEDVHVFDG---HIACDAASNSEIVLPLV 113 G R+ + + G V + ED + S +V PL Sbjct: 218 ASGSAHQYKGLRLNLFSSLSGLCVIDRKALISEDTANDPRVNPEACKKVGAASMVVTPLY 277 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 + +IGVL I S F DED + L + + + Sbjct: 278 EEGNVIGVLKIISDTPHAFDDEDLKTLEMMAGLIGSAIGR 317 >UniRef50_A7HTY0 PTSINtr with GAF domain, PtsP n=5 Tax=Alphaproteobacteria RepID=A7HTY0_PARL1 Length = 755 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 10/157 (6%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED-DTLVLGPFQG---- 62 L R +MA S L L+ + YL+ L L +G Sbjct: 9 RILLRRLREVMAEPESAQKRLDKIVVLIASNMVAEV-CSAYLMNGARELELSATEGLKPT 67 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVKNQI 118 + R+ VG G+ G A + + D G + S + +P++ ++ Sbjct: 68 AVHATRLKVGEGLVGDIAAHARPLNLADAQSHPGFAYRPETGEEIYKSLMGVPILRSGKV 127 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 +GVL + + +T+E+ + L+ + L +V+A D Sbjct: 128 VGVLVVQNRTKRHYTEEEVEALQTVAMVLAEVVAAAD 164 >UniRef50_Q1NJC2 GAF n=3 Tax=Deltaproteobacteria RepID=Q1NJC2_9DELT Length = 561 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 12/155 (7%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL--LEDDTLVL----GPFQG 62 L ++ LA LL E L+ L L+D +++ GP Sbjct: 390 RLLLRIAMVIQHLGKSPRLLAAVMELLNELLSCEAG-SLMLAELDDQEMLIALPTGPHGA 448 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVKNQ 117 ++ RIP +G+ G + + D + S + +PL++ Sbjct: 449 ELQGRRIPADKGLAGWVLRNGKPALTADTLYDQRFDQSLDHNLKFTTRSLLAVPLIINGD 508 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 +GVL+ + + G FT +D Q L L L Sbjct: 509 CLGVLEAINKIGGTFTQQDLQKLTIAANMLAGALE 543 >UniRef50_B9LIX5 Sensor protein n=4 Tax=Chloroflexus RepID=B9LIX5_CHLSY Length = 862 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 56/178 (31%), Gaps = 15/178 (8%) Query: 2 NKTEFYADLN--RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 + L + AL+ L++ YLL+++ L L Sbjct: 182 STQRRLEQLLMVQRVAALINSTLQTDLICRLVVQQLHDVFGYQL-VSMYLLQNEALHLQA 240 Query: 60 FQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVK-NQ 117 G I + GV G V + + + D + + I +PL + + Sbjct: 241 VVGYDRLLPVIQLHEGVAGRVVRNGRAEFVRDAQHDPDFLEVMPDTKQCIAVPLRYETAE 300 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL----------ATTDYKKFFASVAG 165 +GV+ ++S DED L L Q+ T + + +AG Sbjct: 301 PVGVIIVESQGNPALDDEDFFLLSLLADQIGVAFFNSLLFERLRDTNERFRLLIELAG 358 Score = 42.6 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 26/94 (27%), Gaps = 12/94 (12%) Query: 73 RGVCGTAVARNQVQRIEDVHVFD----------GHIACDAASNSEIVLPLVVKNQIIG-- 120 + + +Q + D+ I + +P+ G Sbjct: 84 HSIPARVLDSSQPLLLADLSDEYYDDPAFSPLYRDILRQIRPRHILGVPMRGHGMTCGAL 143 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 VL I RFT D + +L ++ + Sbjct: 144 VLTITDASSRRFTPNDIDLICELARRIAMAVENI 177 >UniRef50_A5UQK5 Sensor protein n=2 Tax=Roseiflexus RepID=A5UQK5_ROSS1 Length = 1017 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 56/178 (31%), Gaps = 25/178 (14%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQGKI 64 + R + + + L + LL + L +D +V G++ Sbjct: 326 LNRIGRIITSSIDPQQVPDIILRQVTELLDAEES-----SLLLTDDHTGEMVFAYTTGQV 380 Query: 65 A----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVK 115 R+P G G+ G A Q + DV + + + + +PL Sbjct: 381 GKRILGQRLPRGVGIAGYVAATGQSVIVNDVQSDERFYRSMDLSTGYTTRTLLAVPLRGV 440 Query: 116 NQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDY--------KKFFASVA 164 + GV+++ + FT ED++ L L L + +A Sbjct: 441 GGVEGVIEVLNRRDLRPFTVEDQRLLEALADYAVIALENARQFQKIDQALARRAQELA 498 Score = 65.3 bits (158), Expect = 7e-10, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 47/160 (29%), Gaps = 15/160 (9%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF------QG 62 + L++ A++ + + L + T L P + Sbjct: 152 QTLNEIGRLISSAFDLTQLFTAIHAVVQRVVEAPTFL-IALYDAQTEELEPVYLIHEGRP 210 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-------SEIVLPLVVK 115 + R G+ G V Q + D + + +PL+ Sbjct: 211 QPTNERWSKDVGLAGVVVRERQPLCVSDYAKECERRGVQPQMLDGRIPGPAWVGVPLIAH 270 Query: 116 NQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATT 154 +++IGV+ + S+ G + E L + A L Sbjct: 271 DRLIGVIVLASSRAGYVYRQEHVNLLMTIAAHAAVALDRA 310 >UniRef50_Q23PX5 GAF domain containing protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23PX5_TETTH Length = 906 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 14/164 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K + + ++ + +F + T ++ + + A +L++ L Sbjct: 548 KLKRIILSVQKMHSSILISDAFNTIIYETCQVV-----NCDRASVFLIDPKRNELWTKVA 602 Query: 63 KIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----DAASNSEIVLPLVVKN 116 + + +R+ +G+G+ G ++ + D H + + + S + LP+ +N Sbjct: 603 RHSKPIRVQIGQGLVGQVAQTGEILNVLDAHQDYRFNSDADKKNNYRTKSVLCLPIKDQN 662 Query: 117 Q--IIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYK 157 Q IIGVL + G FT EDE L + VL + Y Sbjct: 663 QSHIIGVLQAINKKDGDFFTKEDESLLIIISQLATAVLRNSLYH 706 >UniRef50_Q04NN0 Serine phosphatase RsbU, regulator of sigma subunit n=6 Tax=Leptospira RepID=Q04NN0_LEPBJ Length = 582 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 64/175 (36%), Gaps = 16/175 (9%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL--- 57 M++ + L + A + + L + L + L + + L Sbjct: 1 MSERQLSLSLISNITAKINSTDNLEELLNIIIETTKDVL-NTEGCSLLLYDRNEDCLVFN 59 Query: 58 ---GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG-HIACDAA----SNSEIV 109 G + + +++P G+G+ G + + + D + D + + I Sbjct: 60 IAKGTKEKSLTELKVPRGKGIAGMVLETLEPVIVNDAKNDPRIYRNIDETVGFVTYNLIC 119 Query: 110 LPLVVKNQIIGVLD-IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +P+ + +I GVL+ ++S FT++D + L+ L + ++ + Sbjct: 120 VPMSTQGEIQGVLEAVNSLERKEFTNKDIKILQYLSDLAAIAI---RNRRLIRDL 171 Score = 65.7 bits (159), Expect = 5e-10, Method: Composition-based stats. Identities = 22/156 (14%), Positives = 49/156 (31%), Gaps = 8/156 (5%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDDTLVLGPF 60 ++ L + ++ + T + E + F+ ++ L Sbjct: 173 SRANELDCLF-QLSQAISNISEMDQFFNLTVNSVSEIMGAERVSLIFFNPKNGKYELKKS 231 Query: 61 QG---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG--HIACDAASNSEIVLPLVVK 115 G K I GV + + +++ + S I +P+ Sbjct: 232 IGFSLKEEEHFINEKEGVIRKVIETGKPILVQNTSSIMEDCVRPERYKTKSFISVPIRQD 291 Query: 116 NQIIGVLD-IDSTVFGRFTDEDEQGLRQLVAQLEKV 150 +IIG+L+ D F + D+ L + Q+ + Sbjct: 292 GKIIGILNSADKKSGNNFDNADQNVLSTISNQIAEA 327 >UniRef50_UPI00019273C0 PREDICTED: similar to predicted protein n=2 Tax=Hydra magnipapillata RepID=UPI00019273C0 Length = 702 Score = 89.6 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 19/179 (10%) Query: 1 MNKTEFYAD-LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 M K D L ++ S + + L D + +L++ T L Sbjct: 93 MQKQRKLNDFLLSVTRSIFQDIVSMDKVIMKIMNF-AQTLVDADRTSLFLVDTKTEELYA 151 Query: 60 F---------QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASN 105 +R P +GV G + I+ + ++ Sbjct: 152 RIFDIGIGLDTKLRKEIRFPKSKGVAGYVATTGETLNIKKAYDDPRFNREIDQQTGYTTH 211 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 S + +P+ ++ IIGV+ + + G FT DE+ + L + K + + Sbjct: 212 SLLCMPIFIRGNIIGVVQMVNKKKGVFTPNDEKAFQTFAVYCGLALH---HAKLYDKIR 267 >UniRef50_A2EHB3 3'5'-cyclic nucleotide phosphodiesterase family protein n=2 Tax=Trichomonas vaginalis RepID=A2EHB3_TRIVA Length = 1213 Score = 89.6 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 67/169 (39%), Gaps = 13/169 (7%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLG 58 + + + L L +G+ + N + + + + +L+ D D L + Sbjct: 466 LRQQKRLRSLLEVAETL-SGQLRMDVLIPNIMSRACDLVKA-DRCSLFLVNDSHDKLQMT 523 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLV 113 G + IP+ G+ G + + ++ I+D + +A + + + +P+ Sbjct: 524 FGAGLKNTIEIPINAGIVGWSATKGEILNIKDAYDDPRFNRGTDLATGYRTLTILSVPIF 583 Query: 114 VKNQ-IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 + I GV ++ + + G FT++DE+ ++ + + + + Sbjct: 584 DDKKGIRGVTEMINKLDGVFTEDDEKLIQIFNVFCGISI---ENARLYR 629 Score = 40.3 bits (93), Expect = 0.024, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 98 IACDAASNSEIVLPLVVKNQII--GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 + D S I +P++ ++++ VL +FT +D + L L L Sbjct: 760 LNNDDYEKSLICVPILSSDRVVMGAVLMRWKKSQQKFTQDDLKLLESYSVFLSLSLER 817 >UniRef50_A5D1X2 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1X2_PELTS Length = 460 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 10/165 (6%) Query: 5 EFYAD--LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPF 60 E Y + L D + + + ++ L+ +DT L + Sbjct: 97 EKYKEITLLYDITEKLTASLNPKDVAQLVVDQAKRLIRA-DYISVMLINEDTGMLEVVAV 155 Query: 61 QGKIACV--RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQI 118 G+ C I G+ G V + + I D+ ++ +S + +PL VK+++ Sbjct: 156 SGEGGCYTDVIEALTGIKGNVVHTGKPEIINDILSDSRYVRKAIGVSSLMCVPLKVKDRV 215 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 IG++ I S +T ED + L L Q A + + + S+ Sbjct: 216 IGLIIIGSRERINYTAEDMKLLSALAFQAA---ADIENARLYDSL 257 >UniRef50_D1CAA4 GAF sensor signal transduction histidine kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAA4_SPHTD Length = 555 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 14/171 (8%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF--- 60 E L + +A M+ + TL RL + A L +++T L Sbjct: 8 EERLISL-QRVSAAMSSDLDLDRTLTVLVDE-ARRLMHADTAVIRLYDEETDSLRLIAEA 65 Query: 61 ---QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDG---HIACDAASNSEIVLPLVV 114 QG + +P+ + G ++ DV I S +V+PL+V Sbjct: 66 GDEQGVLLGEVVPLDGSLSGYCFRGSRPVVSSDVQSDPRLGQEIKKATRFGSMLVVPLLV 125 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 +++ IGVL + S G F++ED+ L L Q + + + + G Sbjct: 126 RDRPIGVLLVGSYARGAFSEEDQTLLCLLADQAASAI---ENSRLYQQAQG 173 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 10/165 (6%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF----QGKI 64 + + +++++ + + + ED L L Q Sbjct: 179 AILQRISSVISSSLDLDDVFQAIYDEIRGVMPTDAFIIGLTREDGLLDLEFIADGGQRYA 238 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDV----HVFDGHI-ACDAASNSEIVLPLVVKNQII 119 V A+ Q + DV + S I PL+ N++I Sbjct: 239 PVRAFKYSE-VFRRALEERQPVMVGDVLDAEATPMRSVGHTRTKVRSVIAAPLIQGNEVI 297 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 G+L S V R+ + D + L + + + S+A Sbjct: 298 GLLSAQSYVPHRYRECDARLLMTIANHAVVAIENARLYRQAQSLA 342 >UniRef50_A4J938 Metal dependent phosphohydrolase n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J938_DESRM Length = 366 Score = 89.2 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 60/172 (34%), Gaps = 21/172 (12%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT-------LVL 57 E ++ R + + E L ++ +L ++ T L Sbjct: 14 EALWEITRILHTSLDLEEVLDMALTEAMKAVHAEAGT-----LWLNDNQTNEFIQPVLAR 68 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPL 112 GP + +++ +G G+ G A Q Q + DV + S + +PL Sbjct: 69 GPKADGLKGLKLKIGEGMAGWVTANGQSQMVSDVLKDSRWSQRFDQSTGFITRSLLCVPL 128 Query: 113 VVKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + + IG L + + + G+ F ++D L + + + + + + Sbjct: 129 ITQTSCIGCLQLVNKLDGQLFDEDDLSLCEALAGVIGMAV---ENSRLYTDL 177 >UniRef50_A9WCV4 GAF domain protein n=6 Tax=Chloroflexi (class) RepID=A9WCV4_CHLAA Length = 667 Score = 89.2 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 23/171 (13%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQG----KI 64 + +L + + + ++ YL + D LVL G I Sbjct: 120 LHRIISAANSTLDLDTSLQTVVETVAQVM-NVEACSIYLYDKHRDDLVLRATHGLNRAAI 178 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA----CDAASNSEIVLPL-------- 112 V +G GV G A + DV+ + + S + +P+ Sbjct: 179 GQVVARLGEGVTGWAAQLGYPVAVSDVYKDPRYHREPQLGEEMFRSMLAVPIVLFSAERF 238 Query: 113 -VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +++ GV+++ + FT E+ + +L +A + + Sbjct: 239 QFSADKLQGVINVQTIAPREFTQEEISFVETAAGELAFFIANA---QLYQQ 286 Score = 76.9 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 21/157 (13%), Positives = 43/157 (27%), Gaps = 12/157 (7%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIP 70 + + L+A + L A F + ED L L G Sbjct: 301 LQQVSKLIAEQIGLHDVLNLIVEKAVHLSKVDRAAIFQMGEDGQLKLVASYGGEGDGV-- 358 Query: 71 VGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-----SEIVLPLVVKNQIIGVLDID 125 R + V + + + + A + S +PL + + IG + + Sbjct: 359 --RDLVIQTVRDGRPLAVMNAYQDARFPQLPAVARAENFHSLFCMPLRARGRTIGGICLY 416 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 F E + L + + + + + Sbjct: 417 RREPHLFDYEQVRLLNTFADEAAIAI---ENARLYEE 450 >UniRef50_C9RIM5 Metal dependent phosphohydrolase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIM5_FIBSS Length = 397 Score = 88.8 bits (219), Expect = 5e-17, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 64/162 (39%), Gaps = 9/162 (5%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK-IAC 66 A L ++ +A E + L A L ++ + +L++++ L ++ Sbjct: 16 AALLFEYMPKIAAEHETDSLLV-LMADLGRQIVQADRCSLWLIDEEKNELWTKVAHGVSE 74 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVKNQIIGV 121 +RIP+ G G ++ + ++D + I + S + +PL +++GV Sbjct: 75 LRIPLSAGFVGYSLKTGEPVLVDDAYRDARFDRRSDIKNGYHTTSVMTMPLESDGRVMGV 134 Query: 122 LDIDSTVFG--RFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 + V F+++D + L+ + K + + + Sbjct: 135 FQAINKVGENVFFSEKDLERLKLISVYSAKTIESAIRAQKLE 176 >UniRef50_B8G3P3 Sensor protein n=4 Tax=Chloroflexaceae RepID=B8G3P3_CHLAD Length = 726 Score = 88.8 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 61/165 (36%), Gaps = 15/165 (9%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------LVLGPFQGKI 64 D A + + + +L+++T + L Q K+ Sbjct: 194 LNDIAAAVNSMLDPRDIYHLVMEKINQFFRVEAG-SLLMLDEETGDMVFVITLAGGQEKL 252 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVKNQII 119 R+P G G+ G V Q + D + +S + +P+VVK + I Sbjct: 253 IGQRVPPGVGIVGDVVRTQQYAIVHDPERDPRFYRNVSEGIGYNVHSILCVPIVVKGRTI 312 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 G +++ + GRFT+E+ L ++ A + + + F V+ Sbjct: 313 GAIELLNKRTGRFTEEEALRLTRMAATIGIAI---ENAHLFQQVS 354 Score = 52.6 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 48/129 (37%), Gaps = 18/129 (13%) Query: 45 AGFYLLEDDTLVLGPFQGKIACVRIPV-----GRGVCGTAVARNQVQRIEDVHV--FDGH 97 G LL+ + + P + A+ + Q +I D+ + + Sbjct: 51 CGVLLLDAGGESISLVSTFPPRISFPPPIPMSDLPIMQRALQQRQAYQIHDITELPRERY 110 Query: 98 IAC----------DAASNSEIVLPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQ 146 + +A S +++PLV ++++IG L + S F D++ +R + +Q Sbjct: 111 RSPTSLQILTMLTEAQVRSLLIVPLVAQDRVIGALVVASIEQPRHFDDQEISNIRLMASQ 170 Query: 147 LEKVLATTD 155 L + Sbjct: 171 LAAAITAFR 179 >UniRef50_A2FQ29 3'5'-cyclic nucleotide phosphodiesterase family protein n=2 Tax=Trichomonas vaginalis RepID=A2FQ29_TRIVA Length = 1175 Score = 88.8 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 18/170 (10%) Query: 1 MNKTEFYADLNRDFNALMAGETSFL----ATLANTSALLYERLTDINWAGFYLLED--DT 54 M + L + +++GE +A L+ +L+ D D Sbjct: 452 MKQQTSLRSLL-EVAEILSGELKIDDLIPKIMARACELVMAS-----RCSLFLVNDTRDK 505 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIV 109 L+ G + +P+ G+ G +V I+D + + + + + Sbjct: 506 LITTYSGGLKNAIEVPIKSGIVGYTATTGEVLNIKDAYEDPRFNRATDLKTGYRTVTVLC 565 Query: 110 LPLVVK-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 +P+ + GV ++ + + G F++ED + ++ L K Sbjct: 566 VPIFDNKGIVRGVTEMINKIDGYFSEEDVKLIQIFNVFTGISLDNAQLYK 615 Score = 40.6 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 9/157 (5%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRIPV-- 71 L+ + TS L + A + T ++ + I Sbjct: 294 IAELVETCR-LKQFIEQTSEKLTKLFNCHE-AEVWSYNTQTNIIYKYTSTSDQPIIIPLA 351 Query: 72 GRGVCGTAVARNQVQ--RIEDVHVFDGHIACDAASNSEIVLPLVVKNQ--IIGVLDIDST 127 G+ G A+ R + +H A S + +P+ +++ + V+ Sbjct: 352 EAGIAGYALRRQVPVSCLLAKIHSSYVAKADINGDFSVLTIPIRDQDRPIVYAVVLRGKR 411 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLATT-DYKKFFASV 163 + FT+ DE+ L +++ + L + + +K + S+ Sbjct: 412 LPSFFTENDEKILSRIIPYIISSLNSALNVEKNYQSL 448 >UniRef50_B5W0S0 Adenylate/guanylate cyclase with TPR repeats n=4 Tax=Cyanobacteria RepID=B5W0S0_SPIMA Length = 868 Score = 88.8 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 26/169 (15%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 ++ + LM + S + L + L+ ++ + T++ Sbjct: 244 LDLETTLLSVMEQARDLMQADRSTIFLLKKETEELWTKVAK--------ADGKTMM---- 291 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVV- 114 +RIP +G+ G + QV I + + + + + +P+ Sbjct: 292 -----EIRIPANKGIAGYVASTGQVLNITNAYADPRFDPTTDRKTGYRTRNILCMPVDNA 346 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 K ++IGV + + G FTD DE+ LR AQ L + F +V Sbjct: 347 KGELIGVTQLINKHKGSFTDSDEEFLRAFNAQAGIALQNA---QLFENV 392 Score = 56.1 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 20/159 (12%), Positives = 52/159 (32%), Gaps = 16/159 (10%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK 63 + ++ + + + + + L+ + + N + + Sbjct: 65 EQLLDAFTLKIGQILEADRTTIFLINRSKGQLWYKTSPENN----ETDGEGN---SDSKH 117 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLV---VK 115 +R+P+ G+ G + I D + + S + +P+ Sbjct: 118 TEEIRLPMDVGILGHVACTGEALNITDAQTHEFFDPAIDQPSGYEARSILCMPIFSTQNP 177 Query: 116 NQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLAT 153 + + V+ + + R FT+EDEQ R + +L + Sbjct: 178 QEAVAVVRLLNKAGDRPFTEEDEQQFRSFADSIGIILES 216 >UniRef50_A1R1B6 ANTAR domain protein n=2 Tax=Arthrobacter RepID=A1R1B6_ARTAT Length = 240 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 14/172 (8%) Query: 1 MNKTEF-YADLNR---DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV 56 M K + +L+ L+ E + N S + E + AG +L+ Sbjct: 1 MTKKQLPLDELSTAIGRILGLLLTEEKVDHAVQNLSQAIRESVPGTIGAGVSILDSQGRR 60 Query: 57 L-----GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNS 106 + ++ +G G C TA A + + D+ A S Sbjct: 61 TSRGFTDSVVEQADFLQYELGEGPCLTAWATEETVLVHDLSDDSRWAQWSAAVSSLPIRS 120 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 I PL Q G + + S + E L + +L+ + Sbjct: 121 VISAPLTAGGQSFGTIKVYSPEPAAYDTETANLLELFASPAATLLSHIQSAE 172 >UniRef50_B9KXS9 Probable two component sensor kinase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KXS9_THERP Length = 568 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 59/161 (36%), Gaps = 16/161 (9%) Query: 14 FNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPFQG----KIACV 67 L+ + +L E + + G +L ++ TL L G + Sbjct: 37 ITRAATSSLDLDEMLSTVTRVLRETMRV-DSCGVFLYDESSGTLTLRAVDGVAPDRPGGF 95 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVK--NQIIGV 121 +P+G G+ G A ++Q D ++ D S++ +PL+ + +++GV Sbjct: 96 TLPLGVGITGQAALTRRLQIAFDAPRHPAYVDYPHVDDRPFASQVSVPLIARQPGRLLGV 155 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 L++ + F E+ L ++ + + + Sbjct: 156 LNVLTLEPREFWPEEIDFLETAAGEIAIAI---ENALLYQE 193 >UniRef50_A9B249 Protein serine phosphatase with GAF(S) sensor(S) n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B249_HERA2 Length = 1480 Score = 88.4 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 14/165 (8%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG----- 62 A+ R+ ++ + L L ++ + L ++ L + Q Sbjct: 1071 AETMREIARVLNTTFNPDEVLDLILREL-RKVITFDSTSVMLPSNNLLRIVARQAQDEQL 1129 Query: 63 --KIACVRIPVGRGV-CGTAVARNQVQRIEDVHVFDGHIACD--AASNSEIVLPLVVKNQ 117 + + P+ + G + Q + D + S I +PL+ K Sbjct: 1130 AVEWRELTFPLDQTSGAGRVMLSGQPLVVPDTVSDPQWTRSPMPSVVRSWIGVPLISKGV 1189 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 ++GVL+I+S FT D Q L ++ + + Sbjct: 1190 VLGVLNINSLQPNAFTQSDTDLAMTFANQAATAL---EHARLYQE 1231 Score = 69.5 bits (169), Expect = 4e-11, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 26/186 (13%) Query: 3 KTEFYADL--NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + A+L + ++L+ A L A+L E I+ L + ++ Sbjct: 538 RERQLAELNALQRISSLLGSTLEIEAMLRAIDAVLTE-FLHIDGFFVMLNHPQSHMVEAV 596 Query: 61 QG---------KIACVRIPVGRGVCGTAVARNQVQRIEDVHV---------FDGHIACDA 102 + IP + + R D+ + Sbjct: 597 YALNREGEGDFRWMIGLIPPEHTPTWEVLHTRKPLRFGDISQETSTEVAPEDNEVRISSD 656 Query: 103 ASNSEIVLPLVVKNQ-IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT----TDYK 157 + + + +PL + +IG++ I S F++ DEQ + Q+ QL + + Sbjct: 657 RTKAWLGVPLNDQTTNVIGLIAIQSFQANVFSNRDEQFMAQVGQQLTLAIQNARLFAQRE 716 Query: 158 KFFASV 163 + A + Sbjct: 717 RQLAEL 722 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 63/181 (34%), Gaps = 27/181 (14%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWA----GFYL--LEDDTLVLGPF---- 60 + AL A T+ + L N S LL++ I FY+ + + +L Sbjct: 368 IAELEALSAISTATVRAL-NLSTLLHQLNDAIRSFLPVDVFYMAIYDPERQLLTDSIAIE 426 Query: 61 ----QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-------DAASNSEIV 109 ++ +P +++ + + V H + S S + Sbjct: 427 DENEATYLSEEAMPRKGSFTDWVLSKCEPLFLRHVSRDIRHYPTIIRRTIKGSPSESWLG 486 Query: 110 LPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT----DYKKFFASVA 164 +P++ + +GV+ I + F+D D ++ + +Q+ + ++ A + Sbjct: 487 VPMLDANRRPLGVIAIQNYRPYAFSDRDRFFMQSVASQVSLHVLNVQLYQQRERQLAELN 546 Query: 165 G 165 Sbjct: 547 A 547 Score = 60.7 bits (146), Expect = 2e-08, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 52/161 (32%), Gaps = 9/161 (5%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 E + ++ + + F+A Y + E D +GP G + Sbjct: 46 ELLRTIYQELQTVWNFDACFIALSDQYDDSAYRIAMLADEGVIEFSEHDP--IGPLTGYL 103 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 R P+ + + + + F D S + +PLV+ +GV+ + Sbjct: 104 IRQRQPL---LFRDLAIERETIGLPRLLQF----GSDKLSRGWMGVPLVIGTSALGVISL 156 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 S G F + D L ++ + L A + G Sbjct: 157 QSYTVGAFDETDLDLLTRIANSMAVALENALLSHRQAELTG 197 Score = 58.4 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 29/180 (16%) Query: 3 KTEFYADLNRD--FNALMAGETSFLATLANTSALLYERLTDINWAGFY----------LL 50 + A+L+ L+ L + +L L + +L Sbjct: 891 RERQLAELDAQQGITQLVTSTLDLYEMLRSMDLVLRSFLNADAFQVVIGNADRVETAVVL 950 Query: 51 EDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC---------D 101 E+ V G +P G + + R+ D++ Sbjct: 951 EEGKEVETAVIGHP----LPEGS-LTRWTYLHVKPLRMNDIYRDWALYPDLQEPPVPTNS 1005 Query: 102 AASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +S + +PL+ +Q +GVL + +T F DEQ L + QL + + +A Sbjct: 1006 GFMHSWLSVPLIASDQPLGVLAVRATRPAAFGPSDEQFLFNVGRQLAL---SVRNARLYA 1062 Score = 55.7 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 27/186 (14%) Query: 3 KTEFYADL--NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG-- 58 + A+L + L+ + LL I+ L T V+ Sbjct: 715 RERQLAELNTLKLVGELLNRTMDIHEMFRGLNPLL-TSFLKIDGFYILLNNPQTYVIEDL 773 Query: 59 --------PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI--------ACDA 102 G + +P+ + + R + + D Sbjct: 774 CVVERGELLDYGSMIGTSLPLN-TPTAWILRNGKALRFNNTITDIPKLYPELKTVQVNDE 832 Query: 103 ASNSEIVLPLVVK-NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT----TDYK 157 + S + PL+ +++G + S F++ DEQ + Q+ QL + + Sbjct: 833 VALSWLGTPLINHRGEVLGAITTQSMNASHFSESDEQFMLQVAHQLGLAIQNARSFAQRE 892 Query: 158 KFFASV 163 + A + Sbjct: 893 RQLAEL 898 Score = 53.7 bits (128), Expect = 2e-06, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 49/161 (30%), Gaps = 8/161 (4%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIAC--- 66 + D A++ + + E + L L +G Sbjct: 212 VISDIAAMLTQQLPLTEMFGLALDFMLELMHLNAGVVCSLS-GSELQPIVQRGMQHGSLP 270 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 + G A++ N H +A + + + +PL +IGVL + Sbjct: 271 ESFAPLDSIFGVAISSNSAIVDNHTHSKYWQMAQLSHLGTTLAIPLRRHETVIGVLMVGQ 330 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLAT----TDYKKFFASV 163 T F E+ + L+ + QL L ++ A + Sbjct: 331 TEQRAFKTEEVELLQVVSNQLALALEHGNILAQQRRQIAEL 371 >UniRef50_Q0C4J5 Phosphoenolpyruvate-protein phosphotransferase PtsP n=2 Tax=Hyphomonadaceae RepID=Q0C4J5_HYPNA Length = 755 Score = 88.4 bits (218), Expect = 8e-17, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 60/155 (38%), Gaps = 10/155 (6%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPFQG----KI 64 L + +MA E + L ++ + + Y E D+TL+L +G + Sbjct: 11 LMNNLRQVMAEEGDARSRLDQVVRIIASTMVA-DVCSIYHREADETLLLIATEGLKEEAV 69 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVF----DGHIACDAASNSEIVLPLVVKNQIIG 120 R+ G+ G + IED + ++ + +P++ ++G Sbjct: 70 NKTRMGANEGLVGYVARTAEPIAIEDAPRHPAFSYRPETGEDPFHAFLGVPILRTGGVLG 129 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 VL + + + DE+ + L+ + L +++ + Sbjct: 130 VLVVQNRTERTYRDEEIETLQTIAMVLAEIVHRIE 164 >UniRef50_C0QF51 Pdp n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QF51_DESAH Length = 757 Score = 88.0 bits (217), Expect = 9e-17, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 17/176 (9%) Query: 2 NKTEFYADLN---RDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLV 56 NK + DL + L+ + + L ++ L+ + YL + L Sbjct: 3 NKDAAHLDLLFNISELANLVTASSDLESFLTHSVDLVARHFSAPV-CSIYLYNETSGHLT 61 Query: 57 LGPFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEI 108 L +G + + + G G+ G + + R G A + NS + Sbjct: 62 LKATKGLKSDAVNKIHMEPGEGLVGRSFETLSIIREGHASKTPGFKYFPEAGEDLFNSFL 121 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +P+ + IGVL + F DE+ +R +VAQL + + + ++ Sbjct: 122 CVPIKRGVEKIGVLAVQHQELNYFDISDERAIRAVVAQLSGAI---ENARLLMELS 174 >UniRef50_B1ZYQ1 Sensor protein n=2 Tax=Opitutaceae RepID=B1ZYQ1_OPITP Length = 582 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 32/160 (20%), Positives = 61/160 (38%), Gaps = 8/160 (5%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINW-AGFY-----LLEDDTLVLGPFQGKI 64 +L + L + +L + LLED+ P Sbjct: 13 LYRLTSLARQAEDPHSVLRDALEVLVSTFQADAGSIALFNPSTGLLEDEVQHGLPPSADP 72 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDI 124 + + +G G+ G V + + DV +IA +A+ E+ +P+ ++IGV ++ Sbjct: 73 SG--LKLGHGITGWCVLNARSLLVPDVSTEPRYIAERSATRCEMAVPMRDGERVIGVANL 130 Query: 125 DSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +S G F+ ED L QL A+ ++ + + A Sbjct: 131 ESDRRGGFSAEDLALLEQLTAETTHLVLLLWRTRHLQAKA 170 Score = 61.4 bits (148), Expect = 9e-09, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 25/169 (14%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYE-RLTDINWAGFYLLEDDTLVLGP 59 + K E +A L RD +M G + AL ++ + D T Sbjct: 187 LEKQELFATLTRDTREMMQG---------RSCALFHQPADAALVRCVAQDHADAT----- 232 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVV 114 G A +P+ + A + DV G + D +S + PL+ Sbjct: 233 TPGIPAGD-LPIKSSLVAAAFHTKRQVEFSDVQS-PGFGGLADLPDDPTLHSALYTPLLH 290 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + ++ GVL + RF D++++ L + L + +A V Sbjct: 291 EGEVFGVLAVFLDRVHRFDDDEKRACASLASLGAVALQNA---RLYARV 336 >UniRef50_C6N2Z1 Adenylate/Guanylate Cyclase n=2 Tax=Legionella RepID=C6N2Z1_9GAMM Length = 757 Score = 88.0 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 17/165 (10%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWA---GFYLLEDDTLVL 57 M+ +FY L+ + L A + L + L + I +L + T L Sbjct: 10 MSSKKFYTLLSEIYRDLSAT-----SNLKEITKKLIDVTVHIIGCERGTIFLNDYQTGEL 64 Query: 58 GPF--QGKIA-CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIV 109 F QG + +RI G+ G +N+ +++V + H + S + Sbjct: 65 YSFIAQGDLHFEIRILNTTGLAGWTFTKNEPIILDNVDEDERHNKQIDNMTGFKTKSILC 124 Query: 110 LPLVV-KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 +PL +++IGV + + + G FT+ D + ++ L + Sbjct: 125 VPLRNANSELIGVTQMLNKIDGDFTESDIKFVQTLTEHAAMAIQN 169 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 16/171 (9%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 + + Y + ++ E + L + L A ++ ++ T L G Sbjct: 181 QKDLY--FLESISR-VSSEINLSLLLEKIIDTVTRALDS-ERATLFINDEKTNELFTEAG 236 Query: 63 ---KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVV 114 + +R P G+ G+ + I + + S + P+ Sbjct: 237 IGLEKKQIRFPNHLGIAGSTFTSGNIINIPHAYTDLRFNPAVDKQTGFFTRSILSAPVKN 296 Query: 115 -KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +IIGV + + G F +DE L + +Q+ + + K F V Sbjct: 297 KNGKIIGVTQVLNKRRGEFNSDDESQLLAINSQISMSI---ENAKLFDEVQ 344 >UniRef50_A2ERL4 3'5'-cyclic nucleotide phosphodiesterase family protein n=2 Tax=Trichomonas vaginalis RepID=A2ERL4_TRIVA Length = 1180 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 61/172 (35%), Gaps = 20/172 (11%) Query: 2 NKTEFYADLNR---DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL- 57 + + L + + + ++ +LL + +L++ T +L Sbjct: 347 DFETRFQALLEIAMTLSGQLDIDNLIPMIMSRACSLLNAQ-----RCSLFLIDRATNMLT 401 Query: 58 -GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLP 111 G ++IP+ +G+ G + I D + I +N+ + +P Sbjct: 402 TRFANGVDKGLQIPITQGIVGQTATTGAILNIPDAYSDPRFNKQIDIETGFRTNTILSVP 461 Query: 112 LVVK-NQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +V +IIGV ++ + G F DED + + L D K + Sbjct: 462 IVNNRGEIIGVTEMINKKSGLLFDDEDIRMMTAFNVFCGISL---DNAKLYQ 510 >UniRef50_A3VUX2 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VUX2_9PROT Length = 765 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 61/157 (38%), Gaps = 10/157 (6%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVLGPFQG---- 62 L R +MA ETS A L + + + + Y+ DDTL L +G Sbjct: 19 RALLRRIRDIMATETSAQARLDRLATAIAANMVG-DVCSIYVRRSDDTLELFATEGLRSD 77 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVKNQI 118 I R+ V G+ G + D + N+ + +P+ Q+ Sbjct: 78 AIHHTRLAVDEGLVGYVANSKTPVQTSDARSHHAFAYRAETGEDGLNAFLGVPITRSGQV 137 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 +GVL I + F +E+ + + + L +V+AT + Sbjct: 138 LGVLVIQNRSKRVFAEEELEVAQTVATILAEVVATGE 174 >UniRef50_B0V4K0 Phosphoenolpyruvate-protein phosphotransferase n=18 Tax=Acinetobacter RepID=B0V4K0_ACIBY Length = 764 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 70/162 (43%), Gaps = 15/162 (9%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGPF 60 + + + ++ NA ++ S + + + ++ YLL++ VL Sbjct: 5 QLDTLRRIVQEINASVSLHESLDIMVNQVAEAMK-----VDVCSIYLLDERNQRYVLMAS 59 Query: 61 QGK----IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPL 112 +G + V + +G G+ G R ++ +++ + + + NS + +P+ Sbjct: 60 KGLNPESVGHVSLQLGEGLVGLVGQREEIVNLDNAPKHERFLYLPETGEEIYNSFLGVPV 119 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + + +++GVL + + + F++ E L L AQL V+A Sbjct: 120 MYRRKVMGVLVVQNRLPQDFSEAAESFLVTLCAQLSGVIAHA 161 >UniRef50_A9AXC8 Diguanylate cyclase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXC8_HERA2 Length = 717 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 9/162 (5%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 + E RD N + +T L +++ E + + QG Sbjct: 201 QLETLEATIRDLNETLDVDTILNRLLDRIQPIMHADAGM---VCLLDTEQQRMFIRAIQG 257 Query: 63 KIACVR------IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKN 116 A VR P+ RG+ G Q D+ ++ + S++ +P+V Sbjct: 258 YPAEVRRFQFEGWPIDRGIAGLVARTGQPDWTADIRNSSYYVNSRPTTLSQMTVPIVHSG 317 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 +++GV+ ++S G F D+ + + Q+ + + Sbjct: 318 KVLGVMILESDRVGTFNDDTTRFVSQIADHAALSIHNARIHQ 359 Score = 61.1 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 23/166 (13%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + ++ + LM +LA + L+ L +E+ V P Sbjct: 46 LELDTVLEEIYSQTSRLMDTRQFYLALYSPEQELIEFALA---------VENGQRVSWPA 96 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIE--DVHVFDGHIACDAASNSEIVLPLVVKNQI 118 + P G+ + + RI ++ I S + +P+V+ Q+ Sbjct: 97 R--------PYANGLTEWILQHRRPLRINAHNLDPAVAPIIVGQPVQSFLGVPIVLGEQV 148 Query: 119 IGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +GV+ + S ++ DEQ L + Q +A + K FA+V Sbjct: 149 LGVMSVQSVERAEAYSAHDEQILTMIADQAAVAIA---HAKRFAAV 191 >UniRef50_A2F408 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2F408_TRIVA Length = 1086 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 53/171 (30%), Gaps = 18/171 (10%) Query: 2 NKTEFYADLNRDFNAL--MAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVL 57 N E L AL + + + S L +L++ L Sbjct: 361 NFQERLHALLEVAEALSGILVIDQLIPMIMEKSCSLLNA----ERCSLFLVDVVKKELKT 416 Query: 58 GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPL 112 G +RIP+ G+ G + I+D + + S + P+ Sbjct: 417 FFHGGLANAIRIPLTSGIAGKTATTGETINIQDAYNDVNFDRSIDAKTGYRTKSILATPI 476 Query: 113 VVK-NQIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +IIGV ++ + G F +ED + L L D K + Sbjct: 477 YNNRGEIIGVTEMINKCNDGIFDEEDIRLLIGFNVFCGISL---DNAKLYE 524 Score = 42.6 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 54/202 (26%), Gaps = 51/202 (25%) Query: 1 MNKTEFYAD---LNRDFNALMAGETSFL---ATLANTSALLYERLTDINWAG--FYLLED 52 ++ + Y L R + + TS A + +L + IN G Y ++ Sbjct: 517 LDNAKLYEASLNLARQVRSFVDISTSLNQSNALRNTLTDILTNAMAAINGTGATLYRVDK 576 Query: 53 DTLVLGP-FQGKIACVRIPVGRGVCGTAVARNQV-QRIED-------------------- 90 + ++ G A G Q D Sbjct: 577 EKAIIELVHVGGPA----KYGELFAKEVADLGQPKIYTADQIAEKLQSLNLQNAVEEMLG 632 Query: 91 --------------VHVFDGHIACDAASNSEIVLPLVV-KNQIIGVLDIDSTVFGRFTDE 135 V + A LPL+ + ++IGV+ + S R +E Sbjct: 633 NTEAAAKLENQASRVRRSVLFGSDSAICEQICCLPLINSEGEVIGVMLLMSIQ--RMMNE 690 Query: 136 DEQGLRQLVAQLEKVLATTDYK 157 D L L ++ K Sbjct: 691 DMSLLDCFAIFAAVSLERSELK 712 >UniRef50_Q04QN3 Serine phosphatase RsbU, regulator of sigma subunit n=6 Tax=Leptospira RepID=Q04QN3_LEPBJ Length = 587 Score = 87.6 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 14/173 (8%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLG 58 + K L +F L+ E S + + E L Y+ + TL + Sbjct: 175 LKKRILELSLLYEFEKLIVSEKSIHELGSWVLERVLEFLEAKTGT-IYIADHTSQTLRIL 233 Query: 59 PFQG----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH---IACDAASNSEIVLP 111 +G I + +P G GV G + I+++ + + +NS I P Sbjct: 234 AAKGIPKDAIHTIIVPFGEGVAGWVAKERKNLLIQNLEEDKRYNLNVKYKFEANSLISSP 293 Query: 112 LVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 L+ K++++GV+ +++ G F D + L + +L + D F V Sbjct: 294 LIYKDELLGVISVNNKKSGFAFHKNDLEMLGAIANRLSMTIKNAD---LFHKV 343 Score = 79.9 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 53/162 (32%), Gaps = 15/162 (9%) Query: 6 FYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT------LVLGP 59 + + ++ L + L + + +LL++ + LG Sbjct: 10 KLKSILST-STILNANLDLYQLLPLIMLYSKDLLEA-DASSLFLLDETEEFLYCEVALGE 67 Query: 60 FQGKIACV-RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----DAASNSEIVLPLV 113 I R+ +G G+ G + +ED + + S + +PL Sbjct: 68 KGEIIQKYGRLDIGEGIAGWVAKEKKPIILEDAYSDSRFNPSWDQKTGYRTRSLVCVPLF 127 Query: 114 VKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATT 154 ++N+IIG L+I + R F D L L + Sbjct: 128 IENKIIGTLEILNKTQNRSFNACDLNYLTSLSEVAAIAIQNA 169 >UniRef50_B8GBZ1 Sensor protein n=3 Tax=Chloroflexus RepID=B8GBZ1_CHLAD Length = 2783 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 12/165 (7%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIA----C 66 D +++ L L+ + A + + E + L G + Sbjct: 1541 LLDAARILSSLLRPQEVLNKLMELVSRQFNVTTVALWTISEGNVLTPAALDGIPSEQGRR 1600 Query: 67 VRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN----SEIVLPLVVKNQIIGVL 122 +R+P+G+G G Q IEDV+ G + + S + +P++ + QIIGVL Sbjct: 1601 MRVPIGQGFTGRVAETGQPLIIEDVNEEGGSLYPNYQQRNNLISFMGVPVIYREQIIGVL 1660 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT----DYKKFFASV 163 + + RFT+++ L L Q L + ++ + Sbjct: 1661 SVMTNYRRRFTNDEMVLLSGLANQAATALENARLFEERERRINEL 1705 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 58/176 (32%), Gaps = 15/176 (8%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL--LEDDTLVLGP 59 + E +NR L + + AL+ + L ++ L +E L+ Sbjct: 2230 EEKERLEAVNRIALEL-TTQLDLDLIIQRALALISDSL-QVDRGSLMLRDVESGALICRA 2287 Query: 60 F---QGKIACVRIPV-----GRGVCGTAVARNQVQRIEDVHVFDGHIACDAA---SNSEI 108 +G++ +P+ G+ G + + I DV + S Sbjct: 2288 VLHGRGQVQAANVPLRFANNTEGLAGWIMQHQEPVNIRDVTHDPRWVQESGRADTVRSVA 2347 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +PL + IGV+ + S F+D L + + + + F +A Sbjct: 2348 GVPLQTGDTAIGVIILSSPQPNYFSDSQMNLLGTIASVIAAAVYNAQLYGFVNDLA 2403 Score = 80.3 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 60/175 (34%), Gaps = 18/175 (10%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF--YLLEDDTLVLGP 59 ++ E A L A T L + L ++ Y E +T+ Sbjct: 1010 DRAEEMAALF-QVGAAATSTTDLDILLERVYQEIVAFLGIPDFFYIASYNAEQETIRFEL 1068 Query: 60 FQGK-----IACVRIPVGRGVCGTAVARNQVQRIEDV--HVFDG---HIACDAAS--NSE 107 F+ R+ +G+ + + RI+D+ + D S Sbjct: 1069 FKQHGVTVPAYHKRVTPKQGLTAKIIDEGKPLRIDDLLQANDLRNQLFLLVDEGRQVRSW 1128 Query: 108 IVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 I +PL+ + +IGVL + S F++ + L L QL L + + FA Sbjct: 1129 IGVPLISQGAVIGVLSLQSETAAAFSERTLRFLAALANQLAIAL---ENARLFAD 1180 Score = 77.6 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 15/163 (9%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKI 64 E +++ A ++ + + +T+A + L+ Y T+ + G + Sbjct: 454 ERLQEISESLAADLSLDETLESTIAGVAKLVRFSGA---RITLYDERYQTMRIAFQHG-L 509 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----------DAASNSEIVLPLV 113 C G + + RI ++ + D + S + +PL Sbjct: 510 RCQVGEEGDFLSSWIARHQRPLRIGNLSQPPVWLGALDNACILILVNDMPAQSYLGMPLR 569 Query: 114 VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 N ++G L++ ST G F+ EDE+ L + Q + +A + Sbjct: 570 SGNTLLGALELVSTQAGAFSAEDERLLSIIAGQSARAIANANR 612 Score = 72.6 bits (177), Expect = 4e-12, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 59/167 (35%), Gaps = 18/167 (10%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 + +A + + + A + E + L ++ T + R+ Sbjct: 1707 IINRISAEVNASLDVIELIERLHAGIGEIIDTSTSL-IALYDEATNTISYPIAYDRGQRV 1765 Query: 70 -----PVGRGVCGTAVARNQVQRIEDVHV--------FDGHIACDAASN-SEIVLPLVVK 115 P+G G G + + + +G I +A S +V+P++ Sbjct: 1766 TLESQPLGYGTNGWVIRNRRPLLLGTASAARAMGLLIDEGRIGDTSAIEESYLVVPIIYG 1825 Query: 116 NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 NQ++GV++I S F + D + + + Q L + + FA Sbjct: 1826 NQVLGVINIQSYTQHAFDENDLRFVMTVTNQAAVAL---NNARLFAE 1869 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 55/172 (31%), Gaps = 14/172 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 K AD+ R+ + L + + + A L ++ L + Sbjct: 2037 KRRRQADMLREIAQSFTSTLALREIQTLVLEQLQQIVPY-DSAAMLLRDEGYGDLRVVEV 2095 Query: 63 KIACVRIPVGRGVCGT-------AVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPL 112 + +PV + +Q I D + + I PL Sbjct: 2096 RGTTCTLPVNSTLILENSSLFQSMAIEHQPILIADTYRDPRFHELRRLGWCDGAWIGAPL 2155 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +V N+++GVL + + + +E + + +Q + + + F ++ Sbjct: 2156 LVDNELVGVLTVHNIEPAAYDEEALAVVFTIASQASQAIQNA---RLFDQIS 2204 Score = 58.4 bits (140), Expect = 9e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 14/168 (8%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGF-YLLEDDTLVL--- 57 + ++ ++A L + L L ++ F Y E + L Sbjct: 1182 EQQIRELNIINRIGQIIAATLDQRQMLRDVYEQLRHFLPLDSFVAFLYEPESGEMTLCYE 1241 Query: 58 -GPFQGKIACVRIPVGRG-VCGTAVARNQVQRIEDVHVF-------DGHIACDAASNSEI 108 R P G + + Q + D+ + + S + + Sbjct: 1242 VDEGVESFTEHRQPPTPGSLTERIIQTRQPLQFTDLSIEAAQAGFQPVRFGSERPSAAWL 1301 Query: 109 VLPLVVKNQ-IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 +PL++ +Q ++GVL + S G + + + L + +QL + Sbjct: 1302 GVPLLIGDQTVVGVLAVMSYTPGIYHERERAFLTTVASQLALGVQNAR 1349 Score = 54.1 bits (129), Expect = 2e-06, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 22/173 (12%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLAN----------TSALLYERLTDINWAGFYLL 50 +N+ E A + +A N + LL+ LT Sbjct: 641 LNQNEILAFVLEQALRATGASHGLIALRVNSSEATNGGRSMTELLHRSLTTD-----LDS 695 Query: 51 EDDTLVLGPFQGKIACVRIPVGRGVCGTAVAR------NQVQRIED-VHVFDGHIACDAA 103 ED V+ G +R + V + I D + + Sbjct: 696 EDGAFVIVEVIGYAPQLRTRLLGSAIDQDVHTAQESIVRREIAIGDYLSEDERSALLCPN 755 Query: 104 SNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDY 156 ++S + P+ + + GV+ + + F + + LR L Q + + Sbjct: 756 ASSALAAPIFYQGSVYGVVLLLAEQPHYFDHDAAEFLRALTHQAAIGIGNAQH 808 Score = 46.8 bits (110), Expect = 3e-04, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 48/155 (30%), Gaps = 9/155 (5%) Query: 13 DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED---DTLVLGPFQGKIACVRI 69 + + ++G + L A L + +L +RI Sbjct: 1882 EVSQSLSGTLEPDTIQMLIADAAVRLLRAELGAVLRLDRRGNIERQILIDGLEFREDIRI 1941 Query: 70 PVGRGVCGTAVARN-QVQRIEDVHVFD--GHIACDAASNSEIVLPLVVKNQIIGVLDIDS 126 R TA+ R Q I D+ FD H A S + + + + + V+ + Sbjct: 1942 DFRRDGLTTALLRRDQPIAISDLAEFDGGDHHALKLGVRSALGIAVGPIEERLAVIWVGM 2001 Query: 127 TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +T L L Q + L + + FA Sbjct: 2002 RTPFEWTQHQISLLSILANQAAQALKSA---QLFA 2033 >UniRef50_A0LGQ1 Putative PAS/PAC sensor protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGQ1_SYNFM Length = 535 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 58/162 (35%), Gaps = 19/162 (11%) Query: 2 NKTEFYADLNRDFNALMAGET---------SFLATLANTSALLYERLTDINWAGFYLLED 52 ++ F +L+ L+ S L+ + E L F L + Sbjct: 32 DQDTFLDELSDVLRKLITLTEVSTRLSESLSLDVLLSRLIEITTESLEAYRGTVF-LHDK 90 Query: 53 DTLVLGPFQGK---IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----S 104 DT L I +RIP+ +G+ G Q I+D + + Sbjct: 91 DTNELYSRAALGNLIQEIRIPIHQGIVGNVFVTGQPVNIDDAYADARFNPEMDKKTGYKT 150 Query: 105 NSEIVLPLVVKNQ-IIGVLDIDSTVFGRFTDEDEQGLRQLVA 145 + + +P+ K++ I+GV+ + + G F++ D L + Sbjct: 151 RNVLAVPIKTKDRQIVGVIQLLNKKSGSFSENDLLMLEAIGG 192 Score = 78.8 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 9/127 (7%) Query: 38 RLTDINWAGFYLLEDDTLVLGP---FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHV- 93 L + YL +D L + + VR P G+ G+A+ ++ I D Sbjct: 257 TLLAAERSVLYLHDDKANELWSMTTHESQTVRVRFPSHLGIAGSALITGEIVNIPDTAKL 316 Query: 94 ----FDGHIACDAASNSEIVLPLV-VKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLE 148 F I ++S + P+ + +++GV+ + + G F DE L Sbjct: 317 PSSIFPVDIEPGFPAHSVLCAPIKTSQGKVVGVIQVRNKKGGPFDRADESRLEIFAGYAS 376 Query: 149 KVLATTD 155 + + Sbjct: 377 IAIRNAE 383 >UniRef50_Q0YQY7 Sensor protein n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YQY7_9CHLB Length = 1014 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 62/177 (35%), Gaps = 17/177 (9%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDDTLVL-GPF 60 ++ +N AL+ ++ L ++ E + W G+ L +++ VL Sbjct: 195 RSRALQAINNCNQALLHAQSE-EELLQQICTIIVETGGYRMTWVGYALDDEEKSVLPVAK 253 Query: 61 QG---------KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-----S 106 G K++ G+G G+AV + ++ + S Sbjct: 254 AGYDAGYLETLKVSWGDNEHGQGPGGSAVRTGRPFTTRNMQADPRFAPWRKEALARGYIS 313 Query: 107 EIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 + LPL + + GVL+I S F DE+ L + + + +K V Sbjct: 314 SLGLPLKTDDHVFGVLNIYSDKTDAFNDEETALLSSMADNMAYGITMQRNRKEREEV 370 >UniRef50_UPI00006CBA2A hypothetical protein TTHERM_00558500 n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBA2A Length = 174 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 3/99 (3%) Query: 52 DDTLVLGPFQGK-IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVL 110 + L +GP+Q +A RI +G+GVCGTA + Q + +V +IACD + SE+V+ Sbjct: 74 NKVLEVGPYQSTILATPRIAIGKGVCGTAWQEAKTQVVNNVKECKNYIACDNETLSEVVI 133 Query: 111 PLVVK--NQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQL 147 P+ K N+++ V DIDST RFT D + L ++ A + Sbjct: 134 PVFNKTTNEVVAVFDIDSTTLNRFTPFDVEQLEKITALV 172 >UniRef50_Q3IDN4 Phosphoenolpyruvate-protein phosphotransferase ptsP (Phosphotransferase system, enzyme I) (Enzyme I-Ntr) n=3 Tax=Alteromonadales RepID=Q3IDN4_PSEHT Length = 754 Score = 87.3 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 11/162 (6%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE--DDTLVLGPFQG----KI 64 R ++ + + + LA ++ E + Y + D VL +G + Sbjct: 5 LRSIAESVSQQANLDSALACFVTMVKEAM-QTQCCSIYFADYSQDNFVLMATEGLNPDAV 63 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC----DAASNSEIVLPLVVKNQIIG 120 RI G+ G R + I + N+ + +P+V + +++G Sbjct: 64 GKFRIGFTEGLVGLVAQREEAINIAFAKSHPRFKLSPEVNEEGYNAFLSVPVVHQKKVLG 123 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 V+ + + F+ ++E L L AQL LA + K+ Sbjct: 124 VIVVQQKMARVFSQDEESFLITLSAQLASQLAHAEIKEVLRQ 165 >UniRef50_A2FK96 GAF domain containing protein n=3 Tax=Trichomonas vaginalis RepID=A2FK96_TRIVA Length = 1174 Score = 86.9 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 14/167 (8%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF--QG 62 ++Y L L + E A + + + + +L++ L G Sbjct: 514 KYYTALLAVAQEL-SAELDTNALIRKVMTK-AQSFINADRCSLFLVDKVRGGLWSVVAHG 571 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVVK-N 116 + + + +P+G G+ GT ++ I D + + S + +P+ Sbjct: 572 ENSKIFVPLGEGIAGTVAKTGEIINIPDAYSDPRFNPAVDKKTGYLTKSILCVPIRNNDG 631 Query: 117 QIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 I+G + + FT D + + L+ + + S Sbjct: 632 SIMGCTQMINKLDGNEFTKTDIELMSAFNVFCGIALSNA---QLYES 675 Score = 51.0 bits (121), Expect = 1e-05, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 54/172 (31%), Gaps = 22/172 (12%) Query: 1 MNKTEFYADLN---RDFNALMAGETSF--LATLANTSALLYER---LTDINWAGFYLLED 52 ++ + Y + +A++ + +TL L L + + + ++ Sbjct: 667 LSNAQLYESATITKKKMSAILDIVLNMSSTSTLNQLVTNLMSNAKDLVESKYVFIFAIDR 726 Query: 53 DTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSE 107 + + P + V G ED NS Sbjct: 727 ERHICHPIAVN-DTISFSTNEDVVGFVATSGGEVNEEDPTQDRRFNTMFLSQMGIKPNSI 785 Query: 108 IVLPLVVK-NQIIGVLD----IDSTVFGRFTDEDEQGLRQLVAQLEKVLATT 154 + +P++ NQ+IGV++ + S FT +D+ L+ A + Sbjct: 786 LAIPILDSLNQVIGVIEAVDKVGSPK---FTADDQLLLKNFSAFAGLAMQRW 834 >UniRef50_B1I6C3 Diguanylate cyclase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6C3_DESAP Length = 568 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 8/173 (4%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL--- 57 + + L + L + + A + E+ L + Sbjct: 227 VEENNRELRLLYTVAQGLGTSPDLDELLRLILREVRRLVPYDTAAVYLWSEERHLFVPVV 286 Query: 58 --GPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVF---DGHIACDAASNSEIVLPL 112 G G++ + G+ G A + + + D+ S ++LPL Sbjct: 287 LEGAGAGELHDIVWERDEGIVGWAARNREPRLVTDLRQEPELQRQTGLSRFMRSLVLLPL 346 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 V N+++GV I G + ++ L+ + Q+ + VAG Sbjct: 347 VFGNEMLGVFVIGDKRPGVYDEKSLGLLKIIGGQMAAAADNRRLNRRLKKVAG 399 >UniRef50_B0S995 Serine phosphatase RsbU, regulator of sigma subunit n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0S995_LEPBA Length = 606 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 58/152 (38%), Gaps = 7/152 (4%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 +K ++++F L E + ++E + L + + LV F Sbjct: 28 DKIAILLYISKEFANL-DREDQLFDKVILICQEIFES----DNTTLRLWDGEFLVPVKFV 82 Query: 62 GKIACVR--IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 + R + G G GT + + D+ + + S + +P++ K +I+ Sbjct: 83 KETEPPRRNLKAGEGYSGTVFETKEPILVNDLSRSAHYFDEGEKTKSVMCVPIMQKEEIL 142 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 G L ++S + +D + L L +QL L Sbjct: 143 GTLAVESERENFYIIDDLEILEALTSQLALAL 174 >UniRef50_B1I2V9 Diguanylate cyclase with PAS/PAC sensor n=4 Tax=Clostridia RepID=B1I2V9_DESAP Length = 880 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG 62 E +L + + A LA +L + W LL+++ LVL G Sbjct: 487 ERLIELGQALAGHLEESKVLEAALAGVGEVLGAQ-----WYALCLLDEETGELVLKASSG 541 Query: 63 KIAC-----VRIPVGRGVCGTAVARNQVQRIEDVHVF---DGHIACDAASNSEIVLPLVV 114 A R+ + G + R + ++D + V P+ Sbjct: 542 MSAELQGRAARVRPEGSLLGEVLRRGEPVAVDDTAAAGPGMQLPYYAPEMRAVAVAPVRA 601 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +I+G L + S V R+++E+ L + Q+ L + + +AS+ Sbjct: 602 GGKILGTLKVYSPVPRRWSEEEVGYLATVAGQVGLAL---ENARLYASLR 648 Score = 39.5 bits (91), Expect = 0.039, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 12/88 (13%) Query: 87 RIEDVHVFDGHIACD--------AASNSEIVLPLVVKNQIIGVLDI-DSTVFGRFTDEDE 137 + V + D A + +PL+V+ ++ GVL I F++E+ Sbjct: 397 VVAAVERETRAVHFDSRPGAGTAAERRPAVAVPLMVEGKVTGVLTIAGRPEGAPFSEEEA 456 Query: 138 QGLRQLVAQLEKVLATTDYKKFFASVAG 165 L + T + + + Sbjct: 457 AFLTT---LGTGLGLTLQNARLYRQLQA 481 >UniRef50_D1B6W8 Diguanylate cyclase with GAF sensor n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6W8_THEAS Length = 789 Score = 86.5 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 6/157 (3%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERL-TDINWAGFYLLEDDTLV-LGPFQG 62 + + D ++ L Y +DD L + Sbjct: 117 DRLIRVLMDVAHHVSEAQEVEEAARIAVRDLMSIGARWYVSVFLYRRDDDVLSQVAASDN 176 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + +P GRGV A + ++DV ++ A SE+ +PL + + +GVL Sbjct: 177 FQLGLELPRGRGVVWRAFMEGRPVLVKDVSSDPAYVPSGAEVRSEVAVPLQIGGRRLGVL 236 Query: 123 DIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 +++S R D + + + L V+++ + ++ Sbjct: 237 NVESPFELKR---RDLWFVSIIASLLSYVISSMEARR 270 Score = 81.1 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 12/164 (7%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL-----LEDDTL-VLGPFQGKI 64 + + G S L L + E + + + YL ++ D + +L F+G Sbjct: 298 VAEALLSIMGAPSALMDLDGLCRRIVEAVASMGYPNVYLLVQDQVDGDRVFILKAFKGLP 357 Query: 65 ACVRIPVG-----RGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVV-KNQI 118 + V G+ G V D + SE+ +P++ ++ Sbjct: 358 QSDSVRVLSPNRLEGIWGWVVREASPYLCNDTSCDPLYRTGHERIRSELAVPILSSAGEV 417 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +G+LD+ GRF ED + + L +L + + + S Sbjct: 418 VGLLDLQDHRKGRFNQEDVHLMEDVCRYLGFMLEHSYHVRELES 461 Score = 69.1 bits (168), Expect = 5e-11, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 6/153 (3%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYL--LEDDTLVLGPFQGKIA- 65 L + M+ S + + ++ +RL + F + E V+ Sbjct: 467 RLLHNIVREMSFTGSLEDMVRSVVNMVADRLGYRSVTVFKVETAEGGVSVMSSSNRYDDV 526 Query: 66 ---CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 + G + A +Q DV I S++ +P+ + +I GVL Sbjct: 527 EAVNRVLSKGTSLVARAARNGVMQNTRDVSKAREWIPLIPTVRSQLDVPIAIHGRIYGVL 586 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 I+ G F ++E+ L + + Sbjct: 587 CIEDDHVGAFGPQEEETFSILAGHVAVAWRLLE 619 >UniRef50_C9RS71 Transcriptional regulator, NifA subfamily, Fis Family n=5 Tax=Bacteria RepID=C9RS71_FIBSS Length = 509 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 54/169 (31%), Gaps = 16/169 (9%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG----KI 64 + + + + E L N +L L + F LL DTL + +G + Sbjct: 12 SVIQKISVAIIHERDVEKLLENVLGILESELGMLRGT-FALLFGDTLKIEASRGLDETEK 70 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSE-----IVLPLVVKNQII 119 +G G+ G R I D+ + + + E I +PL+ Q+I Sbjct: 71 QRGFYRMGEGITGHVAERGLSHVIPDLRKDSRFLNRTGSRHYETQVAFICVPLIHDGQVI 130 Query: 120 GVLDIDSTVFGRFT-DEDEQGLRQLVAQLEKVLA-----TTDYKKFFAS 162 G L ID V G D D L + + + Sbjct: 131 GTLSIDRPVDGSTDLDRDVALLEIIANITGDAANECIELHGEREAMLEE 179 >UniRef50_C6MUF5 Diguanylate cyclase with GAF sensor n=1 Tax=Geobacter sp. M18 RepID=C6MUF5_9DELT Length = 739 Score = 86.1 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 57/176 (32%), Gaps = 14/176 (7%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL------ 55 +K + + S + + + L++ D Sbjct: 368 SKENALSARLMTLTDTLLQVDSKDQLYQAILEIAADLIDATQG-SIMLIDKDGQNMHIVF 426 Query: 56 VLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS---NSEIVLPL 112 LG C+ + VG+G+ G Q I DV + S I LPL Sbjct: 427 TLGMTLNIARCLPVKVGKGIAGMVAQSGQPLLINDVEKDSRVAMTNRTRFKSKSLICLPL 486 Query: 113 VVKNQIIGVLDI-DSTVFGRFTDEDEQGLRQLVAQLEKVLATT---DYKKFFASVA 164 +K +IIGV+++ D FT+ D + L + T + + F ++ Sbjct: 487 KLKYKIIGVINLSDKKNLTPFTEADLRVLTSFANLASLTIERTEVLEESERFEQLS 542 >UniRef50_Q7UNP2 Probable sensor kinase n=2 Tax=Planctomycetaceae RepID=Q7UNP2_RHOBA Length = 614 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 50/155 (32%), Gaps = 10/155 (6%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M + L + ++ +F L + G D L Sbjct: 216 MEVDDRIDLLKDNIQHYLSDLLNFEVIEIRVLEQTTGDLIPLLSVGIDEEASDR-RLSAH 274 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIG 120 P G+ G A DV I A + S + +PLV+ +Q++G Sbjct: 275 ---------PRENGITGYVAASGVSYVCHDVQNDPLFIPGVADARSSLTVPLVLHDQVLG 325 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 ++++S F+D D Q L + L T + Sbjct: 326 TINVESPDVAAFSDSDLQFLEIFARDIAFALNTLE 360 >UniRef50_Q72KR9 Sensory transduction histidine kinase n=1 Tax=Thermus thermophilus HB27 RepID=Q72KR9_THET2 Length = 686 Score = 85.7 bits (211), Expect = 4e-16, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 17/176 (9%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + E + AGE L ALL E + W G +V Sbjct: 120 ERAERVLRRAGECATQAAGEGDL---LHKVCALLVEEGYALAWVG-EARPTGEVVPREAA 175 Query: 62 GKIA--------CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN-----SEI 108 G + P G+G G A+ + Q + V + + S Sbjct: 176 GAVGYLEGIRVRWDEAPEGQGPTGRALRSGRPQVLRSVEEDPRYAPWRERAQVFGFASSA 235 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 PL V+ ++ G L++ + F +E+ + L L + L + +A Sbjct: 236 AFPLRVEGRVWGSLNVYAPEEDAFDEEEVRLLEDLARLIGHALDRLRALERLRFLA 291 >UniRef50_Q119F8 Adenylate/guanylate cyclase n=7 Tax=Cyanobacteria RepID=Q119F8_TRIEI Length = 864 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 26/169 (15%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 ++ + LM + S L L+ + L+ ++ ++ Sbjct: 235 LDLETTLRAVMDQARNLMQADRSTLFLLSKETNELWTKVATVD----------------- 277 Query: 61 QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVV- 114 Q ++ +RIP RG+ G + Q I D ++ + + + +P+ Sbjct: 278 QTRMVEIRIPAHRGIAGYVASTGQTLNIPDAYLDPRFDPSTDKKTGYQTRNVLCMPVYNA 337 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 K ++IGV + + G FT DEQ L AQ L + + F +V Sbjct: 338 KGELIGVTQLINKNQGSFTTSDEQFLLAFNAQAGIALQNS---QLFENV 383 Score = 64.9 bits (157), Expect = 1e-09, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 18/166 (10%) Query: 4 TEFYADLNRDFNALM--AGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 EFY L L+ G + L N L ++ + +L+ + L + Sbjct: 44 AEFYQYL--QAIDLINNEGIETVFEQLLNAFTLKIGQVLKADQTTIFLVNQEKKQLWYKK 101 Query: 62 -----GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLP 111 GK +P+ G+ G + I D + + + +P Sbjct: 102 ILESTGKSQEYHLPINVGILGHVATTGEALNIADAKSHPLFNEEVDQPQGYETRTILCIP 161 Query: 112 LV---VKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLAT 153 + Q + V+ + + V F +EDE+ R + +L + Sbjct: 162 IFSTINFLQPVAVVRLLNKVSDVPFDEEDEKLFRSFADSMGIILES 207 >UniRef50_B4RZF3 Phosphoenolpyruvate-protein phosphotransferase PtsP n=9 Tax=Bacteria RepID=B4RZF3_ALTMD Length = 772 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 59/155 (38%), Gaps = 11/155 (7%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQG----KI 64 + M + L ++ + L +++ YL + + +L G + Sbjct: 14 LKRIVQEMNQIPALDTALFRLASRVKHTL-NVDSCSIYLADYEAQEFILKATDGLHPDAV 72 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIAC----DAASNSEIVLPLVVKNQIIG 120 VRI G+ G R + I + H + N+ + P++ + +++G Sbjct: 73 EQVRIGFSEGLIGLVGQREEPLNIVNAHSHPRFKHYPEVKEEKYNAFLGTPIINQRRVLG 132 Query: 121 VLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 V+ + RF++++E L L AQL + D Sbjct: 133 VITLQQAEMRRFSEDEEAFLVTLAAQLALEITNAD 167 >UniRef50_A6GDL8 Sigma-54 dependent transcriptional regulator, Fis family protein n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GDL8_9DELT Length = 590 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 59/167 (35%), Gaps = 13/167 (7%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG---PFQGKI 64 + + A L + E L YL++ + L ++ Sbjct: 66 DSVALAAAPYLTRGVELDALLVTVVDSIVEHLDAERGT-LYLVDGRSRTLTSVVAHLPEL 124 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLPLVV-KNQI 118 +R+ G+GV GT A+ Q+ + D A + S + LP+ ++ Sbjct: 125 ERIRLDFGQGVAGTVAAQGQIIAVSDPGADPRFDASIDRQTGFSTRSMLALPIRDSAGEV 184 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 IGVL + + G+FT D+ L +VL T +A + Sbjct: 185 IGVLQLLNAGRGQFTLADQAKATTLATSAGQVLQAT---SLYADLRA 228 >UniRef50_A8ZTC5 Sensor protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZTC5_DESOH Length = 634 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 21/184 (11%) Query: 1 MNKTEFYADLNR---DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL 57 + + + + LNR + + + L+ S + + L A LL+ +T L Sbjct: 143 ITQEKRVSHLNRSMLRVSKALHRYSYLDDLLSFISQEIKKLLGA-EGALVLLLDAETNEL 201 Query: 58 GPF---------QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA----S 104 + ++ VR + + G + + + D + D + Sbjct: 202 YTSGLAYDDPDREKRMKEVRFSLDEVLAGQVIRTGEPVVMHDAEALPQYAERDRKIGYTT 261 Query: 105 NSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK----FF 160 S + +PLVV+++ IGVL + GRF+ +D L L + + T +++ F+ Sbjct: 262 RSLLEVPLVVEDRTIGVLAGINKKEGRFSGQDMDALAALAGTVALAIENTRHQEGLRAFY 321 Query: 161 ASVA 164 V Sbjct: 322 REVQ 325 >UniRef50_D2L393 Protein serine phosphatase with GAF(S) sensor(S) n=2 Tax=Desulfovibrio RepID=D2L393_9DELT Length = 449 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 53/173 (30%), Gaps = 20/173 (11%) Query: 4 TEFYADLNR--DFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED------DTL 55 E + L R + L+ L + L A L+++ L Sbjct: 13 AERLSALTRCFALSRLVTESLDIAEVLERIMTTSRQALGA-EAASLLLVDETPGPGRGDL 71 Query: 56 VLGPFQG-----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASN 105 V QG + R+ G GV G + I D + + Sbjct: 72 VFTVAQGPACLPLRSGFRLAPGEGVAGWVAREARPALIVDAYADPRFHPEVDRLTGYRTR 131 Query: 106 SEIVLPLVVKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYK 157 S +PLV + ++IGV + G FT+ D + L AQ + Sbjct: 132 SMACVPLVYRGRVIGVAQCINKDGGGVFTENDMEIFSLLGAQAAVAIVNARLH 184 >UniRef50_B4UII9 Diguanylate cyclase n=3 Tax=Anaeromyxobacter RepID=B4UII9_ANASK Length = 494 Score = 85.7 bits (211), Expect = 5e-16, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 54/163 (33%), Gaps = 9/163 (5%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDT--LVLGPFQGKI--- 64 L D + G +A + L+ L D +A L E+ T LV+ G Sbjct: 147 LLFDLARRLGGTLELDRLVATLTELVGRGLGDHAFA-LLLAEEGTGDLVVRSVSGLPESA 205 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH---IACDAASNSEIVLPLVVKNQIIGV 121 VRI G G G AV ++D A S + +P++ + GV Sbjct: 206 NGVRIRAGEGPAGWAVRERATVLVKDTGADPRRPVLAWQGEAQGSILAVPMIHREDCAGV 265 Query: 122 LDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 L F ++ + L + Q + + ++ Sbjct: 266 LAFFRPATDAFPPDEVRLLESVAGQAALAIENARLHQKMVRLS 308 >UniRef50_A1HRZ7 Diguanylate cyclase n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRZ7_9FIRM Length = 794 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 8/165 (4%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLL-EDDTLVLGPFQ 61 + D +++ + + TL + ++ + + L + L + Sbjct: 292 QRNLIEDTLAKIGTIISSQLNLKDTLDAIADMVADMMHARQSCIALLTKDHSVLQVAATY 351 Query: 62 GKIACVR-IPVGRGVCGTAVARNQVQRIEDVHVF---DGHIACDAASNSEIVLPLVVKNQ 117 G IP+ + G + I+D+ + ++ S I PLV + Sbjct: 352 GINTPPVVIPLQSSLAGQVLENKTALYIDDLTLHPELFRPQLIFSSIRSLICAPLVNDQE 411 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +IGV++ S+ FT+ D L+ L + +A+ + Sbjct: 412 VIGVIEAYSSDKAAFTERDALFLKALGSYAGAAIASA---MLYEE 453 >UniRef50_C6LID7 Putative GAF domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LID7_9FIRM Length = 202 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 10/172 (5%) Query: 1 MNKTEFYADLNRDFNALMAGETSF-LATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 MNK Y + + L+ S A A+ ++ + FY D + Sbjct: 1 MNKKIGYTQVVWEITRLLQKAESLEDALRASLEEVVKAVGAEAGTIWFYNASGDKRIYPS 60 Query: 60 F---QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVLP 111 F + + + G G+ GT V + + D + + S + +P Sbjct: 61 FWIGGADLTGLSLAPGEGIAGTVVKEGKSTVVRDCQKDERWAGRFDEATGFVTKSMVCVP 120 Query: 112 LVVKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 LV K ++IG + I + G + DED L + FA Sbjct: 121 LVNKYEVIGCIQIINKKDGSLYNDEDVSLCENLAMLTAIAVDGRGLNLGFAE 172 >UniRef50_C1XIF1 Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Meiothermus RepID=C1XIF1_MEIRU Length = 755 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 60/160 (37%), Gaps = 8/160 (5%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 L + ++ A LA+ L + A +L + TL L + Sbjct: 112 QLLAEALEVLPALEHRQALLASLPEHL-TKFVSGGHASVWLPQKHTLRLLASVPTLGAQE 170 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-ASNSEIVLPLVVKNQIIGVLDIDST 127 I GV G A + Q + DV IA + +E+ LPL + +++ V ++++ Sbjct: 171 ISA-EGVVGRAFREGRPQYVPDVRQEPSFIAAPGINTLAELALPLFERGEVVAVFNLETE 229 Query: 128 VFGRFTDEDEQGLRQLVAQLEKVLAT---TDYKKFFASVA 164 F E+ GL + + L + ++ + ++ Sbjct: 230 RP--FWPEEVDGLIRFAETVSLHLDRLADLEARRLLSDLS 267 Score = 42.2 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 102 AASNSEIVLPLVVKNQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 + + LP+ + +++ L++D+ F ++ + + A L +L + + Sbjct: 537 HEIQANLCLPIAFRGEVLAYLNLDNLHDPQAFGEDSLRAAQFFAAPLATLLHDSKTHRLL 596 Query: 161 ASVA 164 A Sbjct: 597 EEAA 600 >UniRef50_D0NI43 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NI43_PHYIN Length = 1115 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 58/166 (34%), Gaps = 18/166 (10%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVRI 69 + + ++ + L + L+ +DI+ AG + + Q A + I Sbjct: 347 VIENAKNILDADRCSLFVADTATRTLHNWHSDISGAGVKVYQ------RSAQKVNAGMTI 400 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----DAASNSEIVLPLVV------KNQI 118 G+G+ G + I D + + + S + +P++ + Sbjct: 401 HFGQGIVGLVAETQESINIPDAYEDPRFNSAWDQKTHYRTKSMLTVPIISNTLEKPHQTL 460 Query: 119 IGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 +GV+ + + G F +DE L+ + + + + + + Sbjct: 461 LGVVQVINKSGGAPFRSKDEFLLQTISKLIALAIENSQLFQRNQEL 506 Score = 50.3 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 61/193 (31%), Gaps = 37/193 (19%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTS-------------------ALLYERLTDI 42 +K EF AL + + E++ + Sbjct: 477 SKDEFLLQTISKLIALAIENSQLFQRNQELCWNVGKLIGDGDIVEAIVSLGMAAEQIIGV 536 Query: 43 NWAGFYLLEDDTLVLGPFQGKIACVRIPVGR-----GVCGTAVARNQVQRIEDVHVFDGH 97 A Y+++ DT L F RI V + AV Q+ + D Sbjct: 537 QGAAVYVVDPDTNELVTFH-HKRRHRIAVSEASYAGSLMEEAVRLQQLTIVNDTTKTGSF 595 Query: 98 IACDA-----ASNSEIVLPLVVKNQIIGVLDIDSTVFG--RFTDEDEQGLRQLVAQLEKV 150 A ++ + + PL+ +++G+L + +T F + D L + +Q V Sbjct: 596 NAFVDSLNGISARNVLFAPLL---RMVGLLQLVNTTRRKTHFDEHDL-FLSIVQSQSCSV 651 Query: 151 LATT-DYKKFFAS 162 LA + ++ Sbjct: 652 LAAILEKQRMLRQ 664 >UniRef50_C8S7I7 Putative PAS/PAC sensor protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7I7_FERPL Length = 695 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 60/170 (35%), Gaps = 15/170 (8%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTD-INWAGFYLLEDDTLVLGPFQ 61 + E + + ++ A L ++ + W G Y ED ++ Sbjct: 44 RVERALRVLSKVSQAVSKIDDEKALLKAVCEIIVKEGGYAYAWVG-YKKEDKSVQPVAKA 102 Query: 62 G--------KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEI 108 G KI G+G GTA+ ++ + ++ S I Sbjct: 103 GEGDYAYEIKITWDESETGKGPTGTAIRTGEIVIVREIDKDQRFAPWREKALKKGYRSSI 162 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK 158 LPL VK ++IG L+I + F +++ L+++ + + + + Sbjct: 163 ALPLKVKGEVIGALNIYAFEKDAFDEDEVGLLKEVAEVVSFGVTSIREAE 212 >UniRef50_C8XKF3 Putative transcriptional regulator, PucR family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XKF3_NAKMY Length = 705 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 20/169 (11%) Query: 8 ADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG----K 63 ++ + ++ + + T LL D + G L E + + + G + Sbjct: 131 REVVQQLLSVRDVDQVLTSIAERTLRLL-----DADICGVMLREGERVCMRACVGNRVAQ 185 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACD-------AASNSEIVLPLVVKN 116 A +R+ G+G+ G + ++ D ++ D I+ D + S + +PL + Sbjct: 186 TARLRMRRGQGLAGLVFDIGRPAKV-DTYLEDRTISPDFMSLAEQEETRSALAVPLRLHG 244 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 ++IGVL++ FT+ DE + L + D + A Sbjct: 245 ELIGVLEVWRRRPSTFTEHDEHRMVVLADIATVAI---DNARLHDEQAA 290 >UniRef50_C1F5V2 Putative sensory transcriptional regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F5V2_ACIC5 Length = 243 Score = 85.3 bits (210), Expect = 6e-16, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 67/168 (39%), Gaps = 14/168 (8%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG----PFQGKI 64 DL + + MA F L L+ + + + Y+L+ D LVL P + Sbjct: 15 DLLHEIGSRMAAADPFHTVLERIIELVTDAV-QCDSCFIYVLDRDQLVLRASKNPHTDIV 73 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIE-DVHVFDGHIA----CDAASNSEIVLPLVVKNQII 119 V + +G+G+ G QV I + + + +P++ + +++ Sbjct: 74 DHVSLSMGQGITGWVATHKQVVAIPAKASSDPRFARLSNLPEDRFEAFLSVPVLCRGKLV 133 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLE--KVLATTDYKKFFASVAG 165 GV+++ + ++ + + L + LA +++K A +AG Sbjct: 134 GVINVQHRQPHPHSQQEIRLITMLGYLVGAEVELARMEFEK--AQLAG 179 >UniRef50_UPI00016C5412 sensor protein atoS n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C5412 Length = 572 Score = 85.3 bits (210), Expect = 7e-16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 55/177 (31%), Gaps = 20/177 (11%) Query: 4 TEFYADL--NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 A L + A+++ L L+++ + + E LV Sbjct: 148 RARLASLAALYETAAVISHILDVDQLLDAVMNLVFKSVGADHGCFVLRDESGRLVPKAVH 207 Query: 62 ---GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA----ASNSEIVLPLVV 114 G + V R V + Q + DVH D A ++ I +P+ Sbjct: 208 YREGTNRQEELAVSRTVVEHVMREAQGVLVSDVHSDDRFRAVESLHRHNIREAICVPMKG 267 Query: 115 KNQIIGVL---------DIDSTVFGR--FTDEDEQGLRQLVAQLEKVLATTDYKKFF 160 + +++GVL + S FT++ + Q + + Y + Sbjct: 268 RREVVGVLFLDTQSSLKQVLSRGPDATTFTEDHLHLASAIAHQAAIAVEESRYHQAL 324 >UniRef50_Q0BUK2 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Granulibacter bethesdensis CGDNIH1 RepID=Q0BUK2_GRABC Length = 800 Score = 84.9 bits (209), Expect = 7e-16, Method: Composition-based stats. Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 10/139 (7%) Query: 25 LATLANTSALLYERLTDINWAGFYLLEDDT-LVLGPFQG----KIACVRIPVGRGVCGTA 79 A LA L+ L Y L L L +G + R+ +G G+ G Sbjct: 61 EAPLAELVRLVASELVSEV-CSIYALRPGEILELVATEGLYPDAVGRTRLRLGEGIVGIV 119 Query: 80 VARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDE 135 A + + D + S + +P+ +++GVL + + R+T++ Sbjct: 120 AASGHLLNLPDAQNHPAFAYRPETGEELYASLLAVPVRRGGRVLGVLAVQNRAVRRYTED 179 Query: 136 DEQGLRQLVAQLEKVLATT 154 + + L + L ++ A T Sbjct: 180 EVEVLETVAMVLAELFAAT 198 >UniRef50_Q04VG8 Response regulator with GGDEF domain n=4 Tax=Leptospira RepID=Q04VG8_LEPBJ Length = 336 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 17/163 (10%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVL------G 58 + Y+ + + + + + A + + NW ++++ L G Sbjct: 21 KLYSSIGKIITSSLEQQEVLDAVMEEVRLF----FSPENW-SLMRYDENSGELFFLIAEG 75 Query: 59 PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLV 113 +I +R+ G G+ G+ V +E+V + + I +P++ Sbjct: 76 LELNRIKNIRLKSGEGIAGSVVQTKLPIFVENVRNDPRFSKRVDEKTGFETKTIIAVPMI 135 Query: 114 VKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTD 155 + Q+ GV+++ + G FT ED L+ + LA ++ Sbjct: 136 FRGQVYGVIELVNRFDGSSFTPEDLVILQTIADFTAISLAHSN 178 >UniRef50_B8G7Y2 Protein serine phosphatase with GAF(S) sensor(S) n=3 Tax=Chloroflexus RepID=B8G7Y2_CHLAD Length = 1332 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 53/166 (31%), Gaps = 15/166 (9%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG- 62 E ++ R ++ LA L+ + + A L++ L + G Sbjct: 922 AETLREVARVLSSSFDPHEVLPLVLAELRKLI-----NYDTATIMLVDGSVLRIAAASGW 976 Query: 63 ----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASN--SEIVLPLVVKN 116 +P+ G V + + + D + + +PL+ K Sbjct: 977 PIDSAPLGRTLPIEASGAGKVVRQREPILLVAPPDSTIWPKGDIGDRILTWLGVPLISKG 1036 Query: 117 QIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +++GVL+IDS F D + + + + + + Sbjct: 1037 RVLGVLNIDSYRRNAFNARDLEVAQTFANHAAIAI---ENAQLYQE 1079 Score = 71.8 bits (175), Expect = 7e-12, Method: Composition-based stats. Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 9/162 (5%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ 61 + L L+A A L + L + + +D+T V+ Sbjct: 748 ERQASRMALVNRIAGLLATRLDQQAILEIATRELVQLFWADHTGLVLFQDDETGVVAAEY 807 Query: 62 GKIA--CVRIPVGRGVCGTAVAR-NQVQRIEDVHVFDGHIACDAAS-----NSEIVLPLV 113 +I +IP+ A+ + Q I DV + S +++PL+ Sbjct: 808 PQIGILGTKIPLHDNPLVNALQTTRRPQVIHDVATDPRAVILREYWQSIGIRSLVIVPLI 867 Query: 114 VKNQIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATT 154 ++Q+ G + DS +T+++ + + + + A Sbjct: 868 SRDQMFGSISFDSFGEPRSYTEDEVELMMTVATSVATAYANA 909 Score = 63.0 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 51/180 (28%), Gaps = 19/180 (10%) Query: 3 KTEFYADLNRDFNAL---MAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP 59 + E + A+ S A L+ + L ++ Sbjct: 24 QQERDQRILTTLYAIGLVARDHPSLRAMFETIVHELHNVFE-FDACYLALCDEQPERFRA 82 Query: 60 F----QGKIACVRIPVGRGVCGTAVARNQVQRIED--VHVFDG-----HIACDAASNSEI 108 +G I + + G V R + D V S S + Sbjct: 83 ALLYDEGVIEFLENREYGYLTGLIVRRREPILFGDLVVERDTTLPTVPFGNVTKLSRSWV 142 Query: 109 VLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA----TTDYKKFFASVA 164 +PL++ IGV+ + S R+ E L+++ + L + + +A Sbjct: 143 GVPLMISEAAIGVISLQSYEPYRYNQETVDLLQRVANVIALALENVVLNAEQDRLSRELA 202 Score = 56.8 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 54/175 (30%), Gaps = 27/175 (15%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLL--EDDTLVLGPFQGKIAC 66 L+A ++ + FYLL + DT V+ Sbjct: 557 QAINQIGTLVAASYDLDRIFNEVRRIVVDLTEASV---FYLLLCDPDTRVVQYAVFVEHH 613 Query: 67 VRIPVG--------RGVCGTAVARNQVQRIEDVHVFDGH----------IACDAASNSEI 108 ++ R + + + + R +D+ V I S + Sbjct: 614 HQLGAELMGRPIHPRSLTDWLLTQRRSLRFDDLSVERDRVEALGIQPYPIGSSHLMRSWV 673 Query: 109 VLPLVVKNQI-IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 +PL+ +N++ IGVL + R+ D L Q+ + L + + F Sbjct: 674 GVPLLAQNEVAIGVLALQDERPYRYDDGTVDFLAQIASLLSLAVQKV---RLFEE 725 Score = 56.1 bits (134), Expect = 5e-07, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 20/170 (11%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGKIACVR 68 + A E S L S ++Y+ + ++ G L E + Q Sbjct: 396 QTAHELLQRAAAELSACMALDVFSMVIYDPVRNLISDGITLDEGNVYRYWISQP------ 449 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGH--------IACDAASNSEIVLPLVV-KNQII 119 P R + + Q + ++ I D + S I PL+ + I Sbjct: 450 -PPPRSLTAWILRECQPIFLNNLPSEITTLPDVEGVIIGADRMAQSWIGWPLLDRDGRPI 508 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLAT----TDYKKFFASVAG 165 GV+ + S FT D + L + AQL + + A + Sbjct: 509 GVVSVQSYRPYAFTLRDMEFLGNVAAQLALHVQNVTLQVQRTRQIAELQA 558 Score = 49.1 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 59/180 (32%), Gaps = 20/180 (11%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTL-VLGPFQ 61 ++E A L+R L+ L ++ L L E TL VL Q Sbjct: 208 RSEELASLSRLAATLVDP-RPLDEVLNEALSIALTTLHFDAGNVRLLDETGTLLVLRAQQ 266 Query: 62 GKIACV-----RIPVGRGVCGTAVARNQVQRIE-------DVHVFDGHIACDAASNSEIV 109 G ++P+ + Q + IE D F H+ S + Sbjct: 267 GFTEEYVEQTYQVPIEISPLREVITNVQPRIIEREWYALYDPAHFPLHL--FPRFESTVN 324 Query: 110 LPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATT----DYKKFFASVAG 165 LPLVV +++G L + + + + Q+ ++ + ++ + + Sbjct: 325 LPLVVGRRVLGTLSLFGFSPRELAPHELVLAQSVANQIAILIEHNRLTEERERQISELRA 384 >UniRef50_A4J4M7 Sensor protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J4M7_DESRM Length = 560 Score = 84.9 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 14/173 (8%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 M K ++ + + S+ + T+ L E + + F LLE D LV+ Sbjct: 35 MTKQNKRLEIINEIARSITVAMSYDEIIERTAEPLKEVIPY-DLLSFCLLEGDQLVIKSG 93 Query: 61 QGKIA-----CVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAA-----SNSEIVL 110 K +P A+ + +++ D S I+ Sbjct: 94 IPKEQVILGVGTVLPRENSAPWKAMREKKCFLRQNIWQDPEKYGEDRDLRKVGIRSAIMA 153 Query: 111 PLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 PL++++ +IG L+ S ++ +D ++QL QL L + + V Sbjct: 154 PLLIQDNVIGTLNFGSNKTEAYSQKDFVFVQQLADQLAVCLQNS---SLYGEV 203 >UniRef50_A2DJF3 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2DJF3_TRIVA Length = 1006 Score = 84.9 bits (209), Expect = 9e-16, Method: Composition-based stats. Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 14/163 (8%) Query: 2 NKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLED--DTLVLGP 59 + + + ++ ++ + LL ++L+ + LV Sbjct: 319 ERLQALLAVAEVIFGVLDLDSLLPTIMDTACNLLNTE-----RCSLFILDKTTNELVTRF 373 Query: 60 FQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVV 114 G +R+ G G+ G + + I D + I + S + +P+ Sbjct: 374 HGGLDTAIRVKNGVGIAGYTASSGECVNITDAYSDSRFDKTSDIQTGFKTRSLLTVPIYD 433 Query: 115 K-NQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTD 155 + GV ++ + G F D+D + + + + Sbjct: 434 NRGAVAGVTEMINRKDGKSFDDDDIKMMVAFNVFCGISIDNAN 476 >UniRef50_C3Y1E6 Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y1E6_BRAFL Length = 875 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 25/208 (12%), Positives = 60/208 (28%), Gaps = 48/208 (23%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGP- 59 M + + L ++ S + ++L + A +L++ T L Sbjct: 298 MKQKQLNDFLLSVTRSIFQDIVSMDTVIMKIMNH-AQKLVTADRASLFLVDSKTNELYAR 356 Query: 60 --------------------------------------FQGKIACVRIPVGRGVCGTAVA 81 +R P+ RG+ G Sbjct: 357 IFDVGSDVSLDEPEGEKVERKEISRRASYTVEEFGRDLSHVNRNDIRFPMDRGIGGHVAT 416 Query: 82 RNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDED 136 + I+D + + + + + +P+ + +IGV+ + + + G F+ D Sbjct: 417 TGETLNIKDAYQDGRFNRDVDLQTGYHTKTILCMPIYNRGSVIGVVQMVNKLAGPFSTAD 476 Query: 137 EQGLRQLVAQLEKVLATTDYKKFFASVA 164 E+ + L + K + + Sbjct: 477 EEAFEKFAVYCGLALH---HAKLYDKIR 501 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 62/167 (37%), Gaps = 13/167 (7%) Query: 2 NKTEFYADLNRDFNA-----LMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLV 56 +K E +L L+ E + +A + D N +L+ D L Sbjct: 126 DKREHLHELTEQIGTHPNHLLLLYEMTLSIKIATNADGFNAYGIDDNGEEIFLIIPDALE 185 Query: 57 LGPFQGKIACVRIPV--GRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVL 110 +++ PV G V A +Q + V D + A AA++S + L Sbjct: 186 PEESDEEVSAPSWPVCEGTTVAAFVAATSQPVKTTHVLGHDQYPEGLGANCAAASSILCL 245 Query: 111 PLVV-KNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTD 155 P++ + G+ ++ T+ F+DE+E+ ++ L + Sbjct: 246 PILRSNGTLGGIAELYRTIGSHAFSDEEEETANTILLWGGLALHNAE 292 >UniRef50_A2ENJ2 3'5'-cyclic nucleotide phosphodiesterase family protein n=1 Tax=Trichomonas vaginalis RepID=A2ENJ2_TRIVA Length = 1087 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 17/161 (10%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQGKIACV 67 + + ++ +T + LL+ +L++++ L+ G + Sbjct: 381 VAEALSGVLDIDTLVPMIMTRACQLLHTE-----RCSLFLVDNEKKELITRFQGGLNKSI 435 Query: 68 RIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVK-NQIIGV 121 RIP+ RG+ G V + I D + + + + +P+ N I+GV Sbjct: 436 RIPMSRGIVGYTVTTGNIVNIPDAYADPRFDQSVDKKTGYHTRNLVTVPIFNNRNDIVGV 495 Query: 122 LDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 ++ + + G F DED + + L D + + Sbjct: 496 TEMINKIDGDCFDDEDLKMVVAFNVFCGISL---DNARLYQ 533 >UniRef50_B5YD58 Sensor protein n=2 Tax=Dictyoglomus RepID=B5YD58_DICT6 Length = 815 Score = 84.6 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/175 (14%), Positives = 63/175 (36%), Gaps = 20/175 (11%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD------T 54 +N+ + ++++ + N+ + + L + LL + +L + D Sbjct: 174 INEMKIFSEIIKTVNSSLETKEILSLILDSAVKLL-----GADGGTIFLKDKDTGDLIFE 228 Query: 55 LVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIA-----CDAASNSEIV 109 +G + ++ G G+ G V I + + + S I Sbjct: 229 RAIGEKGELLEGKKLSKGEGIVGWVVENGTPIIINNPQKDPRFSSYYDKLSGFKTGSIIC 288 Query: 110 LPLVVKNQIIGVLDIDSTVFGR-FTDEDEQGLRQLVAQLEKVLATTDYKKFFASV 163 PL V ++++G +++ ++ R FT+ + L L + L + + V Sbjct: 289 APLKVGDEVLGAIEVINSNRNRKFTEYELDMLMNLAYETSVAL---NKAILYNEV 340 >UniRef50_Q3JEL0 Protein phosphatase 2C-like, stage II sporulation E n=2 Tax=Nitrosococcus oceani RepID=Q3JEL0_NITOC Length = 423 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 8/150 (5%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVRI 69 + + +A T LA ++ A ++ + D+ L + + +R Sbjct: 21 LLEISRQLAIITDLQKLLAQI-EHAALKIFACERATVFVFDHDSNELYSYVASRPEKIRF 79 Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIAC-----DAASNSEIVLPLVVKNQ-IIGVLD 123 P +G+ G N + ++ D + +++ + PL +Q IGVL Sbjct: 80 PARQGIAGECFHNNHIIKVSDAYKDPRFNPAVDDETKFKTHNILSCPLTTHDQTPIGVLQ 139 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLAT 153 I + G F DE LR L AQ L Sbjct: 140 ILNKCSGEFNQWDEILLRTLSAQCGVALER 169 >UniRef50_B5YEI3 Metal dependent phosphohydrolase n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEI3_DICT6 Length = 318 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 54 TLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEI 108 + LG KI + VG G+ G DV + + S + Sbjct: 13 EIALGEKGEKIKRYSLKVGEGIAGKVAETGIPIIENDVENNPFFTSKFDSLTSFKTKSLL 72 Query: 109 VLPLVVKNQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATT 154 +PLV +++IIGV+++ + +F+ D + L+ + Q + Sbjct: 73 CVPLVYQDEIIGVIEVINKKGKSKFSKNDLKLLQAIANQASIAIKNA 119 >UniRef50_B0SAB0 Transcriptional regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SAB0_LEPBA Length = 498 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 7/149 (4%) Query: 7 YADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG---- 62 + ++ L L T L E+ L + +G Sbjct: 11 LRKIQKEIQQLPNITDRLNFILDMTLTLFGASTGS---ISIMDQEEKVLTIVAAKGMDWE 67 Query: 63 KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVL 122 K ++P GV G A + ++ + DV + ++ SE+ +PL+ ++ +GVL Sbjct: 68 KKIAAKLPFNLGVTGRAASSREIIYVPDVTLDKDYVKLIETVRSELAIPLLTRDSTVGVL 127 Query: 123 DIDSTVFGRFTDEDEQGLRQLVAQLEKVL 151 +++S F+ + +QL V+ Sbjct: 128 NLESDKVNFFSPDIINQATLFASQLTIVI 156 >UniRef50_UPI0000588CD9 PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000588CD9 Length = 701 Score = 84.2 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 54/175 (30%), Gaps = 27/175 (15%) Query: 11 NRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ--------G 62 + + + + + + L + +L++ +T L Q G Sbjct: 175 VENMQVIFDDIVAIDDLSQHIM-MFAKSLVSADRCALFLVDTETEELYADQFDDGLDRDG 233 Query: 63 KI-----ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPL 112 K + +R P+ RG+ G + I D + + ++ S + +P+ Sbjct: 234 KPVFVKKSQIRFPLSRGIAGHVAKTGDIVNIPDAYQDRRFNREVDVKTGYSTRSILCMPI 293 Query: 113 VVKNQIIGVLDIDST-----VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 IIGV+ + + F DE + L + + + Sbjct: 294 TSHGLIIGVVQMINKMGQDGQTTAFDQTDESNFKIFAMYCALALH---FSRIYRD 345 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 14/115 (12%) Query: 50 LEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASN 105 +++ L+L PF I G + Q ED+ + + + Sbjct: 69 VKEGNLLLTPFAP------IDPGTNIVAHVAHSRQPVFSEDILGDERFPLGTGRDGSLAK 122 Query: 106 SEIVLPLVV-KNQIIGVLDIDSTVFG--RFTDEDEQGLRQLVAQLEKVLATTDYK 157 S + LPL+ +I+ V+++ S G FT +++Q + L + Sbjct: 123 SVLSLPLIQPNGEIVAVIEL-SRQVGSPPFTQQEKQIAGTYFTWVAIALDKIQVE 176 >UniRef50_D1C9S7 Serine/threonine protein kinase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C9S7_SPHTD Length = 1765 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 12/170 (7%) Query: 3 KTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG 62 + A+ RD + L L + A L D L L +G Sbjct: 1436 QQRLLAERLRDLTGTLTATLDLTQVLDRLLTSLAAVVPYDTAAVV-LHHADRLELAMVRG 1494 Query: 63 KIACVRIP------VGRGVCGTAVARNQVQRIEDVHVFDG--HIACDAASNSEIVLPLVV 114 P + VA Q I D H + + +PL+ Sbjct: 1495 TTRPDEAPGLVIPLANDILLAEVVATGQPLVIADTRDDPRCAHRGGMPDLRAWLGVPLIS 1554 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 ++++ GV+ + S + G F + + Q + + + FA V Sbjct: 1555 ESRVAGVVVLTSQISGAFGEREAGIAFTFAGQAGVAI---ENARLFAEVQ 1601 Score = 63.0 bits (152), Expect = 4e-09, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 14/166 (8%) Query: 5 EFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQ--- 61 + ++ + E A L +L A + ++ L L + Sbjct: 1271 DALLQVSLATATALDPEQQSRAALDEAVRIL-----GAERAFLFRIDGPDLRLVAGRDAS 1325 Query: 62 GKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAAS----NSEIVLPLVVKNQ 117 G R V T A Q + + ++ S I PL ++ + Sbjct: 1326 GNPVTEPRDFSRTVVETVRATGQPMIVS-ASSDGPVLGSESIVAYDLRSIIAAPLTLRER 1384 Query: 118 IIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 GVL +D+ G FT D LR + + L T + A Sbjct: 1385 TFGVLYLDNRLARGVFTPADLDILRAIAGSIAIALETARLAQIEAQ 1430 >UniRef50_Q09E49 Adenylate cyclase 2 n=2 Tax=Myxococcales RepID=Q09E49_STIAU Length = 497 Score = 84.2 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 11/171 (6%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK 63 E L + + L++ L + L+++ L D++ L++ + L P + Sbjct: 111 AEKLEVLLK-VSQLLSSAGPIDGLLERIAQLVFQIL-DVDRVVILLVDPLSGELRPRVAR 168 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIE----DVHVFDGHIACDA----ASNSEIVLPLVVK 115 +P G V + + D D+ + S + +PL + Sbjct: 169 FLTGEVPSGAFYSQHVVDYVRTHSVAALFADALDDPRLTGADSVMLQSIRSAMCVPLKPQ 228 Query: 116 NQIIGVLDIDS-TVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVAG 165 ++GVL +D+ FT+ED + L Q L + + A A Sbjct: 229 ETVLGVLYVDNLARVNGFTEEDLEFLTAFGNQAAIALENSLLSERLAEEAA 279 >UniRef50_A2SNX8 Transcriptional regulator, CdaR family n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNX8_METPP Length = 645 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 15/169 (8%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG----KI 64 + + L + + L+ + G L EDD +V+ G + Sbjct: 55 QALQRVATRILKSHDLSEILLLITQEAKQLLSA-DICGVLLREDDKIVMRRCVGNRSPET 113 Query: 65 ACVRIPVGRGVCGTAVARNQVQRIED------VHVFDGHIACDAASNSEIVLPLVVKNQI 118 A +++ G+G+ G +A + +ED + H+A S PL+ ++ I Sbjct: 114 ANLQMGPGQGLAGLVLAHRKPASVEDYVTSEAISRDFFHLAEAELVRSASAAPLLGRDDI 173 Query: 119 IGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTD----YKKFFASV 163 IGVL++ FT +D L L L + ++ + Sbjct: 174 IGVLEVWRRRPSTFTPQDTTRLTALANLTSIALENAELYAGQRRMVEEL 222 >UniRef50_A2G2M9 3'5'-cyclic nucleotide phosphodiesterase family protein n=2 Tax=Trichomonas vaginalis RepID=A2G2M9_TRIVA Length = 1136 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 26/155 (16%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQGK 63 + +++ ++ + E S L L N L YL++ + Sbjct: 622 KQILSEILQNARVTINAERSSLFLLDNVVNTLTS----------YLVDGGKM-------- 663 Query: 64 IACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLV-VKNQ 117 IP+ G+ TAV + I+D + + S I +P++ Sbjct: 664 --PQSIPLSHGIAATAVKQKISIVIQDAYHDPRFNKMIDFHTGFKTKSLIAVPVITSDGT 721 Query: 118 IIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLA 152 +IGV ++ + G FT D+ L +L Sbjct: 722 VIGVAEMLNKQEGIFTQSDQTLLESFSTFAALLLE 756 Score = 40.3 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 4/90 (4%) Query: 70 PVGRGVCGTAVARNQVQRIEDVHVFDGHIA--CDAASNSEIVLPLVVKN--QIIGVLDID 125 P G+ G A +R +++ + +I + S +++P++ V Sbjct: 329 PGRAGIVGDAFSRECTINVQNTKMQSSYIQYLDGDSEESALIVPIIDTRLAMKWAVCLRG 388 Query: 126 STVFGRFTDEDEQGLRQLVAQLEKVLATTD 155 S F FT DE+ L + L L D Sbjct: 389 SKNFPVFTSADEELLGLMTPYLALSLENAD 418 >UniRef50_C1V4X1 GAF domain-containing protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V4X1_9EURY Length = 403 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 8/163 (4%) Query: 1 MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPF 60 + L+ +A+ E+ +A + + L+EDD +V Sbjct: 124 VEANAKLTALSEHASAITGCESVSEVCEETLAAAVDAL--AFTFCTVALVEDDRIVPRAS 181 Query: 61 QGKIACVRI-PVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQII 119 R V G+ G + Q ++D+ + D + A S + +P Sbjct: 182 TLAPDDYRSCHVSEGIAGRTYRTGKTQLVDDIALDDDTL-FSEARRSTVSVPFG----PY 236 Query: 120 GVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 GV+ + S F + D + L L + L+ D + Sbjct: 237 GVIQVVSNSPNAFDERDAEFLEILADYTAEALSRLDREAALRQ 279 >UniRef50_A7I8H7 Sensor protein n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8H7_METB6 Length = 1325 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 6/101 (5%) Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPLVVKNQIIGVLD 123 IP GRG G AV + D+ I S P+ + ++IG Sbjct: 185 IPEGRGPTGRAVREGRPVVTNDIRQDPAMILWHETAEKFGYRSSGAFPICCRGEVIGAFS 244 Query: 124 IDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKK-FFASV 163 + ++ F+ E+ L ++ ++ L + +K FA+V Sbjct: 245 LYASEPEFFSPEEVALLEEVAEEISFALDNLEREKERFAAV 285 >UniRef50_B5JVZ7 Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JVZ7_9GAMM Length = 760 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 16/168 (9%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTD---INWAGFYLLEDD----TLVLGPFQG 62 + + + E S L + ++ + + ++ YL E+ LVL +G Sbjct: 1 MLSQLRS-ITQEASAAKRLDDALGIIIDGVQSALSVDAVSVYLAEEHNTGTELVLRASKG 59 Query: 63 ----KIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHI----ACDAASNSEIVLPLVV 114 I +R+ G G+ GT R + ++ + + +S + P++ Sbjct: 60 LKSKAIGKIRMRFGEGLVGTVAERAEPLNLDHAAAHPHFKYFPETGEESFHSFLGAPIIN 119 Query: 115 KNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFAS 162 Q +GVL + F ++ L L AQL L+ + F Sbjct: 120 YGQTLGVLVVQQRTPRLFDEDHVAFLITLAAQLGASLSQAAANQDFNQ 167 >UniRef50_Q9Y233 cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A n=36 Tax=Euteleostomi RepID=PDE10_HUMAN Length = 779 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 22/183 (12%) Query: 1 MNKTEFYAD-LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLG- 58 + K D L + + L + + + L + + + ++ L Sbjct: 243 LAKQTELNDFLLDVSKTYFDNIVAIDSLLEHIM-IYAKNLVNADRCALFQVDHKNKELYS 301 Query: 59 ------------PFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACD 101 P K +R + +G+ G +V I D + + Sbjct: 302 DLFDIGEEKEGKPVFKKTKEIRFSIEKGIAGQVARTGEVLNIPDAYADPRFNREVDLYTG 361 Query: 102 AASNSEIVLPLVVKNQIIGVLDIDSTVFG-RFTDEDEQGLRQLVAQLEKVLATTD-YKKF 159 + + + +P+V + +IGV+ + + + G F+ DE + L + Y + Sbjct: 362 YTTRNILCMPIVSRGSVIGVVQMVNKISGSAFSKTDENNFKMFAVFCALALHCANMYHRI 421 Query: 160 FAS 162 S Sbjct: 422 RHS 424 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 55/168 (32%), Gaps = 15/168 (8%) Query: 9 DLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLE-DDTLVL----GPFQGK 63 +LN + L S+++ +A ++L E +++L + G +GK Sbjct: 77 ELNSYIEQRLDTGGDNQLLLYELSSIIKIATKADGFALYFLGECNNSLCIFTPPGIKEGK 136 Query: 64 I---ACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGH-----IACDAASNSEIVLPLVVK 115 I G V + +ED+ + + S + LP+V Sbjct: 137 PRLIPAGPITQGTTVSAYVAKSRKTLLVEDILGDERFPRGTGLESGTRIQSVLCLPIVTA 196 Query: 116 -NQIIGVLDIDST-VFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFA 161 +IG+L++ F ++ +A + + A Sbjct: 197 IGDLIGILELYRHWGKEAFCLSHQEVATANLAWASVAIHQVQVCRGLA 244 >UniRef50_D1C657 GAF sensor signal transduction histidine kinase n=2 Tax=Bacteria RepID=D1C657_SPHTD Length = 492 Score = 83.8 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 50/170 (29%), Gaps = 11/170 (6%) Query: 4 TEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDD--TLVLGPFQ 61 E A + + + L E + A L E+ L Sbjct: 88 QELLA--LHEAGLAITSQLDLQTVLQKVVDEARELVGARYGALTLLSEEGWPEAFLTSGL 145 Query: 62 GKIACVRI---PVGRGVCGTAVARNQVQRIEDVHVFDG---HIACDAASNSEIVLPLVVK 115 RI PVG G+ G ++ V RI DV S + +P+ Sbjct: 146 TPEERERIGPEPVGHGMLGVVMSDGVVLRIPDVTKDPRSFGFPPHHPVMRSLLAVPIRSH 205 Query: 116 NQIIGVLDIDSTV-FGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 +I+G L + F D+ L + Q + + ++A Sbjct: 206 GRILGSLYLTEKEGASEFDAADQARLERFATQTALAIENARLHQRVQALA 255 >UniRef50_A9B7Z7 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B7Z7_HERA2 Length = 692 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 3/146 (2%) Query: 10 LNRDFNALMAGETSFLATLANTSALLYERLTDINWAGFYLLEDDTLVLGPFQG-KIACVR 68 L ++ + + Y D L L G + Sbjct: 37 LLEQTQTILGQNLPLDMLYRQIVTAIARSFANSL-ISIYAAHTDILQLQCQHGFGHNPEQ 95 Query: 69 IPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDAASNSEIVLPLVVKNQIIGVLDIDSTV 128 + +G+ G Q I V I S I +PL+ + Q++GVL ++S + Sbjct: 96 LSFQQGIVGRCARTKQAYLIAYVDQDPDFIRSHPHIQSSICIPLLAEQQLLGVLMVES-I 154 Query: 129 FGRFTDEDEQGLRQLVAQLEKVLATT 154 D + L + QL +A Sbjct: 155 VDTLNQADAEILANVCQQLSNAIAQA 180 >UniRef50_A8QAS5 Probable 3',5'-cyclic phosphodiesterase C32E12.2, putative n=1 Tax=Brugia malayi RepID=A8QAS5_BRUMA Length = 658 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 61/172 (35%), Gaps = 25/172 (14%) Query: 15 NALMAGETSFLATLANTSALL--YERLTDINWAGFYLLEDDTLVLGPF------------ 60 +AL+ ++ A ++ ++LT+ + + +L++ L Sbjct: 166 SALIYYAQDIVSMDAVIKKVMNFAQKLTNADRSSLFLVDHRRKELYARIFDVGTQEDEQI 225 Query: 61 ---QGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA-----ASNSEIVLPL 112 + +R P +G+ G QV IE+ + + + + +P+ Sbjct: 226 KINEDGNEEIRFPANKGISGYVAMTGQVLNIENAYEDPRFNKDIDQKTGYRTRNILCMPI 285 Query: 113 VVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFFASVA 164 ++ +IGV+++ + G FT D+ L + K + + Sbjct: 286 FIRKSVIGVVEMINKTDGPFTKRDQNSFETFAVYCGLALH---HAKLYNQIR 334 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.151 0.383 Lambda K H 0.267 0.0465 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 995,925,729 Number of Sequences: 3077464 Number of extensions: 41153518 Number of successful extensions: 126131 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1620 Number of HSP's successfully gapped in prelim test: 3115 Number of HSP's that attempted gapping in prelim test: 119685 Number of HSP's gapped (non-prelim): 6167 length of query: 165 length of database: 1,040,396,356 effective HSP length: 119 effective length of query: 46 effective length of database: 674,178,140 effective search space: 31012194440 effective search space used: 31012194440 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 88 (38.3 bits)