BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (597 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 1244 0.0 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 832 0.0 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 726 0.0 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 612 e-173 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 592 e-167 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 585 e-165 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 550 e-155 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 533 e-150 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 527 e-148 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 498 e-139 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 482 e-134 UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 481 e-134 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 453 e-126 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 438 e-121 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 429 e-118 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 410 e-113 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 408 e-112 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 340 1e-91 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 334 5e-90 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 325 2e-87 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 315 4e-84 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 301 4e-80 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 296 2e-78 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 285 4e-75 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 282 3e-74 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 251 4e-65 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 251 4e-65 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 251 7e-65 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 249 2e-64 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 240 1e-61 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 240 1e-61 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 238 5e-61 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 224 7e-57 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 222 3e-56 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 220 1e-55 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 216 2e-54 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 213 1e-53 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 204 9e-51 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 203 1e-50 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 202 3e-50 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 201 8e-50 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 201 1e-49 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 199 2e-49 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 199 3e-49 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 197 6e-49 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 187 9e-46 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 182 3e-44 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 181 8e-44 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 179 3e-43 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 174 8e-42 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 170 1e-40 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 169 3e-40 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 168 7e-40 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 164 7e-39 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 158 7e-37 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 157 2e-36 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 152 3e-35 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 144 9e-33 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 143 2e-32 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 138 6e-31 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 130 1e-28 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 129 2e-28 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 123 2e-26 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 108 6e-22 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 103 1e-20 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 101 6e-20 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 94 1e-17 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 90 2e-16 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 86 5e-15 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 84 1e-14 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 84 1e-14 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 84 2e-14 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 83 4e-14 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 81 9e-14 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 81 1e-13 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 81 1e-13 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 79 5e-13 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 78 8e-13 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 77 2e-12 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 77 2e-12 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 77 2e-12 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 77 2e-12 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 77 2e-12 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 76 3e-12 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 75 5e-12 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 74 1e-11 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 74 1e-11 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 73 3e-11 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 73 4e-11 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 72 5e-11 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 71 1e-10 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 70 2e-10 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 69 7e-10 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 69 8e-10 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 68 9e-10 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 67 2e-09 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 66 3e-09 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 65 6e-09 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 65 8e-09 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 64 1e-08 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 64 2e-08 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 64 2e-08 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 63 3e-08 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 63 3e-08 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 63 3e-08 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 63 4e-08 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 62 5e-08 UniRef50_UPI0001913F01 hydrogenase 2 large subunit n=1 Tax=Salmo... 62 5e-08 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 62 6e-08 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 62 6e-08 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 62 6e-08 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 61 1e-07 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 61 1e-07 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 60 2e-07 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 60 2e-07 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 60 3e-07 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 60 3e-07 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 59 4e-07 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 59 5e-07 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 59 5e-07 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 59 6e-07 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 58 8e-07 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 58 9e-07 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 58 1e-06 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 58 1e-06 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 58 1e-06 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 58 1e-06 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 58 1e-06 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 57 2e-06 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 57 3e-06 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 56 3e-06 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 56 3e-06 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 56 4e-06 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 56 5e-06 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 55 6e-06 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 55 6e-06 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 55 7e-06 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 55 8e-06 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 55 1e-05 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 54 1e-05 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 54 1e-05 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 54 1e-05 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 54 1e-05 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 54 2e-05 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 54 2e-05 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 54 2e-05 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 54 2e-05 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 54 2e-05 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 53 3e-05 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 53 3e-05 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 52 5e-05 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 52 5e-05 UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit... 52 5e-05 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 52 8e-05 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 51 1e-04 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 51 1e-04 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 51 2e-04 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 50 2e-04 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 50 2e-04 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 50 2e-04 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 50 3e-04 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 50 3e-04 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 49 4e-04 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 49 4e-04 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 49 5e-04 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 49 6e-04 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 49 7e-04 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 47 0.002 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 47 0.002 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 47 0.002 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 47 0.002 UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methan... 47 0.003 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 46 0.003 UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermopl... 46 0.004 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 46 0.004 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 46 0.005 UniRef50_UPI0001874346 putative reducing hydrogenase alpha subun... 46 0.005 UniRef50_Q2RV77 Putative hydrogenase expression/formation protei... 45 0.006 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 45 0.006 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 45 0.007 UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobil... 45 0.010 UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment... 45 0.010 UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 ... 45 0.011 UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83W... 42 0.060 UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 42 0.073 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 1244 bits (3220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 597/597 (100%), Positives = 597/597 (100%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL Sbjct: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL Sbjct: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG Sbjct: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA Sbjct: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC Sbjct: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ Sbjct: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 Query: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY Sbjct: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG Sbjct: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD Sbjct: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR Sbjct: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/600 (64%), Positives = 479/600 (79%), Gaps = 4/600 (0%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS +Y+TQGYT+ +AGRRLVVDP+TRIEGH+RCEVNIND NVITNAVSCGT+FRG+EIIL Sbjct: 1 MSYEYKTQGYTVVDAGRRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +GRDPRDAWAF ERICGVCTG HALASV+A+E+A+GI +PDNANIIRN+M L HDHL Sbjct: 61 KGRDPRDAWAFTERICGVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VH Y L G+DW+DV+ A KADP+ TSELAQ LS WP SSPGYF V+++L K + QLG Sbjct: 121 VHLYHLTGLDWVDVVSASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IF NGYWGHP YKL PEANLM AHY+EALDFQ+++V IH +FGGKNPHPNW+VGG+PC+ Sbjct: 181 IFTNGYWGHPAYKLSPEANLMVVAHYIEALDFQKDVVHIHTIFGGKNPHPNWLVGGVPCS 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 +NID GA +N ERL+ V +I R F V+IPD LA+ F W IG GLS Sbjct: 241 LNIDGVGAADVINQERLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLS 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR-YPND 359 VL+YG PDIAND+ E SLLMP GA+ING+FN VLPV L +P+++QE V+H+WY+ YP Sbjct: 301 VLAYGGIPDIANDYTENSLLMPPGAIINGNFNEVLPVSLTNPEEIQETVNHSWYKPYPAG 360 Query: 360 QVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 + G HP++GIT+P YNPG ++KG+ T+++Q++E++RYSW+K P WRG+ MEVGPLAR LI Sbjct: 361 KTGLHPWEGITEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLI 420 Query: 419 AYHKGDAATVESVDRMMS-ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 Y + + VD + A +P++ +QSTLGRI R+ E WAA K++YF+D+L+TNL Sbjct: 421 GYARKNDDIKGLVDDFLGRAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNL 480 Query: 478 KNGNLATASTEKWEPATWPT-ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNA 536 KNG ATA+T KW+P +WPT E RGVGFTEAPRGALGHW IRD KI+ YQCVVPTTWN Sbjct: 481 KNGVRATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNG 540 Query: 537 SPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +PR P GQ+ AYEA+LMNT+MAIPEQPLEILRTLHSFDPCLACSTH++G DG +L++V++ Sbjct: 541 APRSPDGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/619 (57%), Positives = 457/619 (73%), Gaps = 26/619 (4%) Query: 3 TQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG 62 + Y TQG+ +++ GRR+VVDP+TRIEGHMRCEVN++ NVI NAVS GTM+RGLE+IL+G Sbjct: 2 SAYATQGFNLDDRGRRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKG 61 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 RDPRDAWAFVERICGVCTG HALASV A+E+A+ I++P NA++IR IM TL HDH VH Sbjct: 62 RDPRDAWAFVERICGVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVH 121 Query: 123 FYQLAGMDWIDVLDALKADPRKTSELAQSLS-SWPKSSPGYFFDVQNRLKKFVEGGQLGI 181 FY L +DW+DV+ ALKADP++TSEL Q +S + P SS GYF D+QNRLK+FVE GQLG Sbjct: 122 FYHLHALDWVDVMSALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGP 181 Query: 182 FRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI 241 F NGYWG Y LPPEANLM HYLEALD Q+E VKIH +FGGKNPHPN++VGG+PCAI Sbjct: 182 FMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAI 241 Query: 242 NIDESGAVGA-VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI-GTGLSDK 299 N+D GA A VNMERL+ V++ I +F NV +PD LAIG K + G GL+ Sbjct: 242 NLDGIGAASAPVNMERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAAT 301 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND 359 VL YG +P++A + + + +PGGA++NG+++ V PVD D QQVQEFV H+WY+Y ++ Sbjct: 302 NVLDYGEYPNVA--YNKSTDQLPGGAILNGNWDEVFPVDPRDSQQVQEFVSHSWYKYADE 359 Query: 360 QVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 VG HP+DG+T+P Y G + KG+ T I+Q++E +YSWIK+PRWRG+AMEVGPL+R ++ Sbjct: 360 SVGLHPWDGVTEPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYIL 419 Query: 419 AYHKGDAAT---------VESVDRMMS-----ALNLPLSG------IQSTLGRILCRAHE 458 AY + +E +M++ AL LP + + ST+GR L RA E Sbjct: 420 AYAHARSGNKYAERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALE 479 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI 518 +Q+ + + L+ N++ G+ ATA+ +KW+PATWP + +GVG APRGALGHW I Sbjct: 480 SQYCGEMMHSDWHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRI 539 Query: 519 RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 +DG+I+ YQCVVPTTWN SPRD KGQIGA+EA+LMNT M PEQP+EILRTLHSFDPCLA Sbjct: 540 KDGRIENYQCVVPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLA 599 Query: 579 CSTHVLGDDGSELISVQVR 597 CSTHV+ +G EL +V+VR Sbjct: 600 CSTHVMSAEGQELTTVKVR 618 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 612 bits (1577), Expect = e-173, Method: Compositional matrix adjust. Identities = 310/629 (49%), Positives = 400/629 (63%), Gaps = 61/629 (9%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RLVVDPITRIEGH+R E + D N I A S GT RG+E+ILQGRDPRDAWAF +RICG Sbjct: 9 RLVVDPITRIEGHLRIEAEM-DGNTIKQAFSSGTSVRGIELILQGRDPRDAWAFAQRICG 67 Query: 78 VCTGVHALASVYAIEDAI------------------------------------------ 95 VCT VH +ASV A+EDAI Sbjct: 68 VCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSIG 127 Query: 96 -----GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQ 150 + +P NA +IRNIM+AT + HDH++HFY L +DW+DV+ AL ADP +T+ LA Sbjct: 128 VLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLAG 187 Query: 151 SLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEAL 210 LS +P+SSPGYF DV+ ++K VE GQLGIF N YWGHP YKLPPE NLM AHYL+AL Sbjct: 188 QLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDAL 247 Query: 211 DFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADF 270 +QRE+VK+H +FGGKNPHPN++VGG+P IN++ S +N RL +Q IT+ F Sbjct: 248 TWQREVVKVHTIFGGKNPHPNFVVGGVPSPINLNAS---TGINTSRLVQLQDAITQMKSF 304 Query: 271 INNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGD 330 ++ V PD +AI + K W G GL + L+YG P + D S L P GA++ D Sbjct: 305 VDQVYYPDIVAIAGYYKEWGTRGEGLGN--FLTYGDLPMTSMD-DPDSFLFPRGAILGRD 361 Query: 331 FNNVLPVDLVDPQQVQEFVDHAWYRYP-NDQVGRHPFDGITDPWYNPGDVKGSDTNIQQL 389 + V +DL DP ++QEFV +WYRY + G HPF+G T Y G + L Sbjct: 362 LSKVHDLDLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYT-----GPKPPYKHL 416 Query: 390 NEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 N YSW+K+PRW+G+AMEVGPLAR L+ Y K DAA + V+R +S L+L S + STL Sbjct: 417 NVGAEYSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILDLETSALFSTL 476 Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR 509 GR L RA E + +LQ ++D+L+ N+ G+ T + ++P WP + +GVG EAPR Sbjct: 477 GRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQGVGVMEAPR 536 Query: 510 GALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK-MAIPEQPLEILR 568 GALGHW +++GKI+ YQCVVPTTWNA PRDP Q GAYEAAL + + P+QPLEILR Sbjct: 537 GALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLEILR 596 Query: 569 TLHSFDPCLACSTHVLGDDGSELISVQVR 597 TLHSFDPCLAC+ HV+ + G E + ++VR Sbjct: 597 TLHSFDPCLACAVHVMDETGEERLRLKVR 625 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 283/578 (48%), Positives = 395/578 (68%), Gaps = 17/578 (2%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RLV+DP+TRIEGH+R E + + N + +A S GTM RG+EIIL+GRDPR+AWAF +RICG Sbjct: 3 RLVIDPVTRIEGHLRIEAEL-EGNRVKSAYSSGTMVRGIEIILKGRDPREAWAFAQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VCT VHA AS+ A+EDA+ IKVP NA++IR +M+ TL+ HDH+VHFY L +DW++ + A Sbjct: 62 VCTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPIQA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 LKADP KTSELAQ LS + KSSP YF +VQ+++++ VE QLGIF GYW HP Y+LPPE Sbjct: 122 LKADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLPPE 181 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANLM AHYL+AL++Q +IV++H +FGGKNPHPN++VGGM C I++ A+NM++L Sbjct: 182 ANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHPNFVVGGMACPIDLQSD---TAINMDKL 238 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++S+I +F+ V +PD +AI F K W E G G+ + VL P+ + E Sbjct: 239 GRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVL---GEPE-GDSHREG 294 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYP-NDQVGRHPFDGITDPWYNP 376 +P + + + N + VD +++E+V H++Y+Y D+ G HPF+G T Y Sbjct: 295 KFFIPPTFIRDRNLEN---YEDVDYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYT- 350 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G + QQLN + +YSW+KAPR+RG EVGPLAR L Y + + E V+ +S Sbjct: 351 ----GPEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSYLS 406 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 L LP++ + ST+GR L R E A ++ ++D+L+ N+K+G+ T + EKWEP+TW Sbjct: 407 KLGLPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTWE 466 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + +G+G EAPRG+L HW I+DGKI YQ VVPTTWN SPRD KGQ YEA+L+ + Sbjct: 467 KDAKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGHE 526 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 + P++PLEI+RT+HSFDPCLAC+ H+ D +I + Sbjct: 527 LVNPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 302/628 (48%), Positives = 408/628 (64%), Gaps = 53/628 (8%) Query: 18 RLVVDPITRIEGHMRCEVNIND-QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+DP++RIEGH+R E+ +++ + +TNAVS GTM+RG+E+I++ RDPR+ WAF +RIC Sbjct: 4 RVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCT +HALASV IEDA+ I++P NAN IRNIML TL+ HDHLVHFY L +DW+ L+ Sbjct: 64 GVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVSPLE 123 Query: 137 ALKADPRKTSELAQSL---------------------SSWPKSSPGYFFDVQNRLKKFVE 175 A+KADP T+ L + +PK++PGYF Q+++K V+ Sbjct: 124 AVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKNLVQ 183 Query: 176 GGQLGIFRNGYWGHPQYK-LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV 234 GQLGIF +W HP YK LPPE +L+ +HYL LD QRE+V H VFGGKNPHP++IV Sbjct: 184 SGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPHYIV 243 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQF--NKPWSEI 292 GGM C+I++D+ A +NMERL +V+ + A+ N + D LAIGQ K W+ Sbjct: 244 GGMNCSISMDDMNA--PINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGWT-Y 300 Query: 293 GTGLSDKCVLSYGAFPD-----IAN-DFGEKSLLMPGGAVIN-------GDFNNVLPVDL 339 G GLS + VL YG +PD I N D+ +K L G V N + + DL Sbjct: 301 GGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLTNKDL 360 Query: 340 VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIK 399 +P +QE+V H+WY+YPN+ G HP++GITDP+Y G +G+ T+ + L+E +YSWIK Sbjct: 361 TNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYT-GPKEGTKTHWKYLDENGKYSWIK 419 Query: 400 APRWRGNAMEVGPLARTLIAY---HKG-------DAATVESVDRMMSALNLPLS-GIQST 448 PRW+ EVGPLAR +I Y +G D V +D + LNLP + +T Sbjct: 420 EPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPTT 479 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 +GR RA E Q A YF KL N+K G+ + A+ EKWEP+TWP++ +GVG TEAP Sbjct: 480 VGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEAP 539 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 RGALGHW I+DGKI+ YQ VVPTTWN SPRD KGQ GA+E ++ +T + I ++PLEILR Sbjct: 540 RGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEILR 599 Query: 569 TLHSFDPCLACSTHVLGDDGSELISVQV 596 ++HSFDPCLACSTHV E++S ++ Sbjct: 600 SIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust. Identities = 277/628 (44%), Positives = 397/628 (63%), Gaps = 53/628 (8%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQN-VITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+VVDPI+RIEGH+R E+ +++ + + +A+S GT +RG+E++ + RDPRD WAFV+RI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT HALA++ A+EDAIGI +P NAN IRNIM ++L HDH+VHFY L +DW+ + Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 136 DALKADPRKTSELAQSL----------------------SSWPKSSPGYFFDVQNRLKKF 173 AL ADP KT++L + +PK++ YF VQ ++KK Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 174 VEGGQLGIFRNGYWGHPQYKL-PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW 232 VE GQLGIF +W HP Y L PPE +LM +HYL LD QR+IV H VFGGKNPHP++ Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI 292 IVGGMPC+I++++ A +N +RL V+ I T D ++N +PD LAIG+ I Sbjct: 242 IVGGMPCSISMNDMNA--PINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMI 299 Query: 293 -GTGLSDKCVLSYGAFPD-----IAN-DFGEKSLLMPGGAVING----DFNNVLPV---D 338 G GL+ K V+SYG +PD I+N D+ +K ++ G V N D +P+ D Sbjct: 300 DGGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEGKD 359 Query: 339 LVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWI 398 +DPQ + E VDH+W+ YP+ HP +G+TDP + G G+ + L+E ++YSWI Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFT-GPKSGTKEKWEFLDEDKKYSWI 418 Query: 399 KAPRWRGNAMEVGPLARTLIAYHK-----------GDAATVESVDRMMSALNLPLSGIQS 447 K+P ++G EVGPLA+ ++ Y K ++ V +D + L +P + Sbjct: 419 KSPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMT 478 Query: 448 TL-GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTE 506 T+ GR CR +AQ AA QYFF+KL++N+KNG+ A K+EP TW + +GVG + Sbjct: 479 TMVGRTACRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNTWDKDAKGVGLVD 538 Query: 507 APRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 APRG LGHW I+DG+ YQC+VP+TWNA P+ + GAYE ++++T + I ++PLEI Sbjct: 539 APRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLEI 598 Query: 567 LRTLHSFDPCLACSTHVLGDDGSELISV 594 L+ +HSFDPCLAC+TH+ G +++SV Sbjct: 599 LKVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 533 bits (1374), Expect = e-150, Method: Compositional matrix adjust. Identities = 267/584 (45%), Positives = 375/584 (64%), Gaps = 20/584 (3%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+V+DP+TRIEGH+R E+ D VI NA + T +RG+E+I RDPRD WAFVERICG Sbjct: 14 RVVIDPVTRIEGHLRVEMEAGD-GVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVERICG 72 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VCTG HA+A++ A+EDA+ VP A ++R+++ L DH++HFYQL MDW+DV+ A Sbjct: 73 VCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVDVMSA 132 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 LKADP +T+ +A+SLS WP SS YF VQ +LK + GQ IF NGYWGHP YKLPPE Sbjct: 133 LKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYKLPPE 192 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 NL+G AHYL+AL +QR+++KIH + GGKNPHPN++VGGM CAIN++ A+N L Sbjct: 193 VNLLGVAHYLQALVWQRDMIKIHTILGGKNPHPNFLVGGMACAINMNND---QAINQFSL 249 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 + ++ ++ DFI+ V PD +AI F K ++ IG S+ GA +I Sbjct: 250 SYLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIGA--SNPNFFCTGAPSEINTGAPAG 307 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ-VGRHPFDGITDPWYNP 376 ++ G ++NGD+ NVLP D +++EFV +WYRY + G P+DG T+ YN Sbjct: 308 KGMIKPGVLLNGDYRNVLPFDQ---DKIREFVTSSWYRYTEGRDAGLAPYDGETNADYN- 363 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G + L++ +Y+W+KAPR+ G+AM VGP AR +I Y +G A VE VD Sbjct: 364 ----GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVDAACD 419 Query: 437 ALNLPLSG--IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 L LP + STLGR+ RA +A + ++ ++NG +T + EKWEP T Sbjct: 420 KLGLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKWEPET 479 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 WP+ C+GVG+ EAPRG+L HW I +G+ YQ VVP+TWN+S RD GQ+G YE +L + Sbjct: 480 WPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEYSLAH 539 Query: 555 T---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 T + P +P+E LRT+HS+DPC +C+ H+ ++G +++ Q Sbjct: 540 TGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILTRQ 583 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 527 bits (1357), Expect = e-148, Method: Compositional matrix adjust. Identities = 263/587 (44%), Positives = 374/587 (63%), Gaps = 21/587 (3%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 A R+V+DPITRIEGH+R E+ + I NA +C T FRG+E IL+GRDPRDAWAF +R Sbjct: 2 ATERIVIDPITRIEGHLRIELEA-EGGRIGNAWACATQFRGIEKILEGRDPRDAWAFAQR 60 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGVCTGVHA+AS+ A+EDAI ++P++A +IRN++ DH++HFY L +DW+DV Sbjct: 61 ICGVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVDV 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + AL ADP TS LA S+S WP +S +F +VQ R+ +GG LGIF +GYWGHP Y+L Sbjct: 121 MSALAADPAATSRLAASVSPWPNNSVSWFKEVQQRVATSAKGG-LGIFASGYWGHPAYRL 179 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 PPEANLM AHYLEAL +QRE++K+H +F GKNPHPN++VGGM +IN+D + V Sbjct: 180 PPEANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYLVGGMATSINLDNQLTINKV-- 237 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 RL+ + I + F++ V PD +AI F ++ IG + AF Sbjct: 238 -RLDQLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTPA 296 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN-DQVGRHPFDGITDPW 373 G+ + G +++GD+ P +P+ V E+V AWY YP D+ G HP+ G T+P Sbjct: 297 GKP---VAAGLLMDGDYRTPHP---FNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPH 350 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 Y G +L++QE+Y+W KA R+ G ++VGP AR ++AY +G TV+ +R Sbjct: 351 YT-----GPKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANR 405 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + L + + STLGR CRA E+ A +++ +F L +++G+++T + + WEP Sbjct: 406 DLGILKAGVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPE 465 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 +WP + +G+GF EA RG L HW I +G+I YQCVVP+TWN+S RD G +G YE AL Sbjct: 466 SWPKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQALA 525 Query: 554 NTK---MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 K + ++P+E+LRT+HSFDPCL+C+ H+L G V+VR Sbjct: 526 GDKKHPLVDAKRPVEVLRTIHSFDPCLSCAVHML-IPGGPAFEVKVR 571 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 260/595 (43%), Positives = 364/595 (61%), Gaps = 32/595 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + ++VDPITRIEGH+R E I++ N I +A S TMFRG+E IL+GRDPRD RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCTG H S+ A+EDA I +P NA ++RN++ L+ HDHLVHFY L +D++DV+ Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGY-----FFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 A KA+P T+ AQ + P F VQ+R+ KFV+ G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVG 250 YKL PE NL+G AHYL+ALD QR++ K+ A+FGGKNPHP I VGG+ C +I Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK------ 274 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQF------NKPWSEIGTGLSDKCVLSY 304 N R+ L + ++ + +FI +PD G +K + G G + +LSY Sbjct: 275 --NPARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSY 332 Query: 305 GAFPDIAND---FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV 361 ++ D D F +L P G V++GD + L VDP ++ E V H+WY Sbjct: 333 MSYGDFRLDDTGFYNSEMLFPSGLVLDGDISKALD---VDPNKITEDVTHSWYE--GTGA 387 Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYH 421 HP++G T P Y G K +D L +E+YSWIK+P + G +EVGPLAR +I Y Sbjct: 388 PEHPYEGTTIPKYT-GLEKKAD-GYSYLKTEEKYSWIKSPLYDGKKVEVGPLARMVIGYV 445 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 KGD + V + NLP++ + ST+GR RA E + + + D+L N +G+ Sbjct: 446 KGDKRITKYVGNFLKRANLPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAASGD 505 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 L+T + ++ + + +G+G EAPRG+LGHW +++GK++ YQ VVP+TWNA PR P Sbjct: 506 LSTWTEFDFDKVS--VDTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRGP 563 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 KG+IGAYE +L+ TK+A PE+PLEI+RT+HSFDPC+AC+ HV+ G EL +V Sbjct: 564 KGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 246/588 (41%), Positives = 366/588 (62%), Gaps = 26/588 (4%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 A R+VVDPITRIEGH+R E+ +D+ I+ A + T FRG+E +++G DPRD WAFV R Sbjct: 2 ATERVVVDPITRIEGHLRIELEADDKK-ISKAWAETTQFRGIETVVKGHDPRDVWAFVGR 60 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGVCTG H++ASV A+EDA I +PD A IR ++L + HDH+VHFY L +D+++V Sbjct: 61 ICGVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVNV 120 Query: 135 LDALKADPRKTSELAQSL-SSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + A +ADP+K + A S+ S+W ++ F +V+ ++ ++ GQL +F GYW HP Y+ Sbjct: 121 VSAAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDYR 180 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPEANLM +HYL+AL FQR I++I+ VFGGKNPHPN++VGGM C+I+ D+S V V+ Sbjct: 181 LPPEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHPNFLVGGMACSIDPDKSETVNQVS 240 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYG-AFPDIAN 312 +++ ++ DF+ N PDA+AI K + +IG S L+ G A + Sbjct: 241 LDQ---IKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQ--SSPNFLAVGMAGATYSG 295 Query: 313 DFGEKSL-----LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN-DQVGRHPF 366 D E + + G ++GD + V P +P ++ E + AWY Y + D+ P Sbjct: 296 DPAESRIPTIHPEIKPGVFLDGDLHTVHP---FEPWKITEGISSAWYTYADGDEAQLTPD 352 Query: 367 DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 G T P Y G + L + ++Y+W KAPR+ G AM++GP+AR L+AY++G++ Sbjct: 353 VGETTPQYT-----GPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGEST 407 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKL-QYFFDKLMTNLKNGNLATA 485 TV+ VD + L + L + ST GR L RA E+ A + + + + + +G++ Sbjct: 408 TVKLVDDALKTLGITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDVF 467 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 + KWEP++WP E +G+ F E RG L H+ ++D K++ YQ VVPTTW ASPRD GQ+ Sbjct: 468 NGSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPRDKTGQL 527 Query: 546 GAYEAALMNT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 G YE AL + ++PLE+LRT+HSFDPC+AC+ H++ +G E Sbjct: 528 GPYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 481 bits (1238), Expect = e-134, Method: Compositional matrix adjust. Identities = 253/591 (42%), Positives = 359/591 (60%), Gaps = 38/591 (6%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +R+ +DP+TRIEGH+R + I + V++ A + GTM+RG+E I++ RDPRDAW V+RIC Sbjct: 3 QRITIDPVTRIEGHLRIDCEI-ENGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 62 GVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDITS 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLPP Sbjct: 122 ALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLPP 181 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPH-PNWIVGGMPCAINIDESGAVGAVNME 255 E NL+ AHYL+AL+ QR+ ++ A+ GGK PH N VGG+ IN+D +G +N+E Sbjct: 182 EVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLD---GLGVLNLE 238 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 RL ++S I + +DF+ V D I F W G G ++Y + P+ D Sbjct: 239 RLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDSK 293 Query: 316 EKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 294 NGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTTI 350 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT---- 427 P Y+ G +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 351 PAYDGWSDDG------------KYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNKL 398 Query: 428 --VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATA 485 + ++ + ++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 399 NEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTTF 458 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 PAT E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ + Sbjct: 459 VKPNI-PAT--GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDDV 515 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 516 GPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust. Identities = 253/587 (43%), Positives = 347/587 (59%), Gaps = 48/587 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +VVDPITRIEGH+R V + + V +A S +FRGLEIIL+GRDPRDA F +R CGV Sbjct: 16 IVVDPITRIEGHLRIMVEVENGKV-KDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGV 74 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 CT VHALAS ++DA+ + +P NA ++RN+++A+ + HDHLVHFY L +DW+DV AL Sbjct: 75 CTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAAL 134 Query: 139 KADPRKTSELAQSLS-SWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--GHPQYKLP 195 KADP K ++LA S++ + P +S VQ++LK FVE GQLGIF N Y+ GH Y LP Sbjct: 135 KADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLP 194 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNM 254 PE +L+ AHYLEAL Q + A+ GGKNPH + +VGG C+ + Sbjct: 195 PEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGG--CS-------NYQGLTK 245 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + L ++ F+N IPD LA+ F K W IG G S+ Y AF + A D Sbjct: 246 DPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG-GTSN-----YLAFGEFATDD 299 Query: 315 G--EKSLL---MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 EK L P G + D VD VD + E V ++WY D G+HP+DG+ Sbjct: 300 SSPEKHLATSQFPSGVITGRDLGK---VDNVDLGAIYEDVKYSWYAPGGD--GKHPYDGV 354 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 TDP Y +L++++ YSW+KAPR++G AMEVGPLART IAY KG + Sbjct: 355 TDPKYT------------KLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKK 402 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 VD ++ L++P + + STLGR R E ++ + ++ + N A K Sbjct: 403 VVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCA---K 459 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYE 549 WE P E +GVG +APRGAL HW I+ KID +Q VVP+TWN PR +G E Sbjct: 460 WE---MPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVE 516 Query: 550 AALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 AL+ T +A P++P+EILRT+H+FDPC+AC HV+ + +E++ +V Sbjct: 517 EALIGTPIADPKRPVEILRTVHAFDPCIACGVHVIEPETNEILKFKV 563 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 438 bits (1127), Expect = e-121, Method: Compositional matrix adjust. Identities = 240/581 (41%), Positives = 332/581 (57%), Gaps = 42/581 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +VVDP+TRIEGH+R EV + + V NA S T+FRGLEIIL+GRDPRDA F +R CGV Sbjct: 25 IVVDPVTRIEGHLRIEVEVENGKV-KNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGV 83 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 CT HALAS +++A+G+ +P NA IRN++L + HDH+VHFY L +D++DV AL Sbjct: 84 CTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAAL 143 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--GHPQYKLPP 196 KADP K +++A S+S K++ VQ++LK FVE GQLG F N Y+ GHP Y L P Sbjct: 144 KADPAKAAKVASSISPR-KTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDP 202 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNME 255 E NL+ AHYLEAL Q + + AVFG KNPH + +VGG+ C A+ + Sbjct: 203 ETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC---------YDALTPQ 253 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 R+ +++ T F++ V IPD L + K W++ G +++G FP +++ Sbjct: 254 RIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG---GTDNFITFGEFPK--DEYD 308 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 S G V DF N+ P D + Q++E V H+WY RHP+ G T P Y Sbjct: 309 LNSRFFKPGVVFKRDFKNIKPFDKM---QIEEHVRHSWY---EGAEARHPWKGQTQPKYT 362 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 D+ G D RYSW+KAPR+ G ME GPLA+ LIAY +G D ++ Sbjct: 363 --DLHGDD----------RYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 410 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 + L + + STLGR R E A + + N+ G+ + WE Sbjct: 411 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICA--PWE---M 465 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + GVGF APRG L HW I DGKI +Q VVP+TW PR K ++ EA+L+ T Sbjct: 466 PKQAEGVGFVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGT 525 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +A ++P+EILRT+HSFDPC+AC HV+ +E+ ++ Sbjct: 526 PVADAKRPVEILRTVHSFDPCIACGVHVIDGHTNEVHKFRI 566 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/583 (39%), Positives = 323/583 (55%), Gaps = 29/583 (4%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 T + +++V+DP+TRIEGH+R E+ +++ N +T A + G +FRG+E IL+GRDPRD Sbjct: 2 TESTKKQKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTGL 61 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVCT H AS+ A+E+A I P NA I+RN++ L+ DHLVH+Y L +D Sbjct: 62 IAQRICGVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLD 121 Query: 131 WIDVLDALKADPRKTSELAQSLSSWP-KSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 ++DV AL+AD K SE+A P S G VQ +L FV G+LG+F NGYWGH Sbjct: 122 YVDVTSALEADCHKASEIAHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGH 181 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGA 248 QYKL PE NL+ HYLEAL QRE+ K A+FGGK PHP N +VGG+ +++ Sbjct: 182 AQYKLSPEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDM----- 236 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 +N +RLN II T +F+ +PD + + G G + G + Sbjct: 237 ---LNPQRLNDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEGRGHGNFMCSGGY- 292 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + L G + DF+ +D D Q+ E +WY D+ P+D Sbjct: 293 ----QLSDDEPLFASGIIWGHDFSK---IDAFDDTQITEEASRSWY---ADEAPTRPYDE 342 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 T+P Y + G+ L + +YSWIKAPR++G MEVGP AR +I Y K Sbjct: 343 TTEPDYTDMNADGT------LKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYVKKAKTVR 396 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + M L L S +GR RA EA+ + F +L+ N+K + T + Sbjct: 397 PYMQHFMDDTGLELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDETTWT-- 454 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 K++ P E +G E PRG L H+ I + K+ YQ VVPTTWNASP+D +G G Y Sbjct: 455 KYDFEALPLETKGRAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPY 514 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSEL 591 E A++ K+A P+QPLE+LR +HSFDPCLAC+ HV+ G L Sbjct: 515 EEAIVGLKLADPQQPLEVLRAVHSFDPCLACAVHVIDAQGQTL 557 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 410 bits (1053), Expect = e-113, Method: Compositional matrix adjust. Identities = 230/588 (39%), Positives = 329/588 (55%), Gaps = 31/588 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +R+VVDPITRIEGH+R EV +++ NVI +A S T++RGLE IL+GRDPRDA F +RIC Sbjct: 3 KRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCT H A + A+E+A+GIK P NA +IR++M +L HDH VHFY L G+DW D+ Sbjct: 63 GVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDITS 122 Query: 137 ALKADPRKTSELAQSLSSWP-KSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 ALKADP S+LA S P + VQ R+ +F G LG F N YWGH Y+ Sbjct: 123 ALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYRFS 182 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 PE NL+ +HYL+AL+ QR ++ A++G K PHP + VGG+ ++ A++ Sbjct: 183 PEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTSVMD--------ALDP 234 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 RL + ADF+N D + + K + G + K SY P Sbjct: 235 SRLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYSYQEIP-----L 289 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 + + G V++GD + V ++ + E HAWY+ + HP+DG DP Y Sbjct: 290 NKTEWMYSTGIVMDGD---ITKVHEINEDLITEEATHAWYK---ENKALHPYDGQQDPNY 343 Query: 375 NP-GDVK-----GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 D++ G+ + ++E+ +Y+WIKAPR+ G +EVGPLA ++ + Sbjct: 344 TGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRIE 403 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + + + LPL+ + +TLGR R E + +A F+ L+ NLK + +T +T Sbjct: 404 KVATQFLKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANLKV-DQSTYTTY 462 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 K + E +G PRG L HW I++G I YQ VVP+TWNA PRD G G Y Sbjct: 463 KIDKN---KEYKGRYMGTVPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGPY 519 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 EA+L+ K+ QPLEI+R +HSFDPC+AC+ HV+ G+EL +V Sbjct: 520 EASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 230/578 (39%), Positives = 330/578 (57%), Gaps = 48/578 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 ++VDP+TRIEGH+R E + + +I + S +FRGLEIIL+GRDPRDA F +R CGV Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKII-DVRSSSQLFRGLEIILKGRDPRDAQHFTQRSCGV 76 Query: 79 CTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 CT HALASV +++A+G+ +P NA IIRN++LA + HDHLVHFY L +D++DV Sbjct: 77 CTYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSA 136 Query: 137 ALKADPRKTSELAQSLSSWPK------SSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--G 188 L AD K +E+A ++ + SS ++ +K V+ G+LGIF N Y+ G Sbjct: 137 CLNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGG 196 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESG 247 HP Y LPPE NL+ HYL+AL Q + + AV+G KNPH + ++GG+ C + + Sbjct: 197 HPAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVTCYEGLTD-- 254 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + +N ++ DF+ + IPD LA+ F K W+ IG + +S G F Sbjct: 255 -------KYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIGGTTN---FMSCGEF 304 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 P + S + G ++N N+ VD +DP ++ E V H+WY+ D +HP++ Sbjct: 305 PVPGGETDLTSRYVKPGVIMN---RNLGQVDALDPSKIAEHVKHSWYK---DGAAQHPYN 358 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G+TDP Y L+++ +YSW+KAPR+ G A+EVGPLA L+ Y G Sbjct: 359 GVTDPMYT------------SLDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEF 406 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 VD ++ AL + + STLGR R E K + + L N+ G+ Sbjct: 407 KTYVDFVLKALGVGPEALFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDIC-- 464 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + W+ P +GVG+ APRGAL HW I+D KID +Q VVP+TWN PR G Sbjct: 465 KDWD---MPASAQGVGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGP 521 Query: 548 YEAALM-NTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 E AL+ NT +A PE+P+EILRT+HS+DPC+AC HV+ Sbjct: 522 LEEALLDNTPIADPERPVEILRTVHSYDPCIACGVHVI 559 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 340 bits (872), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 207/572 (36%), Positives = 313/572 (54%), Gaps = 45/572 (7%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R V+DPITRIEGH+R E+ + + V ++A G FRG+E++++ R P DA V+RICG Sbjct: 3 RSVIDPITRIEGHLRVEMEVTNGKV-SDAWVSGGCFRGMEMVVENRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA +S A E A GIK+ +NA IIRN++ + H H++ FY LA +D+++ L+A Sbjct: 62 VCPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ----YK 193 LKADP +LAQ+ + S F ++ RL F + GQL IF +G W + Y+ Sbjct: 122 LKADPADAYDLAQAAGTSMNSD---FVALKERLANFADNGQLSIF-SGNWFDAEDGTAYQ 177 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPE +L+ AHYLEAL Q + +I A+ GGK PH +V G + D Sbjct: 178 LPPELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPTD--------- 228 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 ++L+ ++++ D++ + MIPD LAI + G G +++G F + D Sbjct: 229 -QKLDELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGR--YVAWGVF-EGPGD 284 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + + M + G ++ L + V + E++ +WY+ D P+ +T+P Sbjct: 285 YASYTEQMANRYLPMGVIDDKLNLSDVQENLITEYMGRSWYK--GDATYTSPY-FVTEPE 341 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 Y + N ++RY+W+K P + G E G L+R L AY + VE VD Sbjct: 342 YT------------EYNVEDRYTWVKCPAYDGKPYEAGGLSRVLAAYKRNVPFVVEQVDG 389 Query: 434 MMSALNLP--LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 ++ AL P + QSTLGR R E + AG ++ + +L+ LK+G+ S E Sbjct: 390 LLEALGAPGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGD----SEYFRE 445 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 P+T G GF EAPRGAL H +I+DGKI+ YQ ++PTTWN +P + G+ G E A Sbjct: 446 PST--ITGAGTGFWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQA 503 Query: 552 LMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 L+ + E+P+ LRT+HSFDPC AC+ H+ Sbjct: 504 LIGNPVGDIEKPINALRTVHSFDPCTACAVHI 535 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 334 bits (857), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 198/580 (34%), Positives = 302/580 (52%), Gaps = 66/580 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRIEGH++ EV + + V+T+A S GTM+RG E +L+GRDPRDA ER CG Sbjct: 3 KVVIDPVTRIEGHLKVEVEVTN-GVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC G H AS A++ A G KVP +IRN+M+ +W HDH +HFY L+ +D++D+ Sbjct: 62 VCAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDI--- 118 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 +++ + PG V++++ K + G Y PE Sbjct: 119 ------------TAVAKYQGQDPG-LLRVKDKISKLIAAGDTAPLTPRYEPDAFCVNDPE 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + +HYL AL+ Q + K+ A+F GK PH + IV G G N+E + Sbjct: 166 LVTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAG----------GVTMLPNIEVV 215 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFN-KPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +S++ D++ N+ + D L G P ++ G G L+YG F D Sbjct: 216 EQFRSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGF---GLDDEG 272 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 K L G V++G+ +NV+P VD ++ E V HAWY+ ++ G HP+D Sbjct: 273 KDFLFKQGIVLDGNLSNVMP---VDQSKITEGVTHAWYK--DNPNGDHPYD--------- 318 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 SDT + L +++ YS++KAPR+ G +EVGPLAR L+ +G + +++ Sbjct: 319 -----SDT-VPDLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQG-------LMDIIA 365 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 N+ + R RA E A ++ + ++L + G L TE W P P Sbjct: 366 KYNIKPGAV----ARHAARAFETVILAKEMINWVNQLEAEMGKG-LRIHDTEHWNP---P 417 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 +G+G TE PRGALGHW I+D + YQ VVPTTWN SP+D +G G E AL+ Sbjct: 418 ATGQGIGLTEVPRGALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVP 477 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + P+ I+R + S+DPCLAC+ H++ +E+ +V Sbjct: 478 IPDENNPINIVRVIRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 325 bits (834), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 202/579 (34%), Positives = 306/579 (52%), Gaps = 54/579 (9%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R +DPITRIEGH+R E+ +ND ++T+A G FRG+E++++ R P+DA V+RICG Sbjct: 3 RTTIDPITRIEGHLRVEMEVND-GIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA A+ A E A GI +P++A IIRN++ + H H++ Y LA +D+++ L+A Sbjct: 62 VCPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--------GH 189 L AD + LA ++ F +Q+RL +F + GQL IF ++ G Sbjct: 122 LNAD----TGLAYDVAEEYGLKNADFVSLQDRLARFADNGQLSIFSGNWFPTAEQYADGT 177 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 +Y L PEA+L+ AHYLEAL+ Q +I AV GGK PH ++ G + D+ Sbjct: 178 NEYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGTMFVPTDQ---- 233 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 +L+ ++ +I R +++ V +PD++A+G+F G G YGA+ Sbjct: 234 ------KLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGCR-----RYGAWGV 282 Query: 310 IAND-FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + F MP G + G N + V+ ++ E+V H+WY D PF+ Sbjct: 283 FERESFKMADRYMPSGVIELGPDGN-YQLSEVEESKITEYVGHSWYSGSED---LPPFEQ 338 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 +P Y + N +RY+W K R+ G +E+G +R L+AY +GD Sbjct: 339 GVNPEYT------------EYNTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIK 386 Query: 429 ESVDRMMSALNLP---LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATA 485 E VD ++ AL LS ST+GR R E + A ++ + +L+ +K G+ Sbjct: 387 EHVDALLVALGGTPGDLSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYF 446 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 + E G GF EAPRGAL H +++GKI YQ ++PTTWN +P DP G Sbjct: 447 TKSD------AVEGEGTGFWEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVH 500 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 G E AL+ + E+P+ LRT+HSFDPC AC+ HV+ Sbjct: 501 GPMEQALIGVPVTDMEKPIHALRTVHSFDPCTACAVHVV 539 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 315 bits (806), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 194/588 (32%), Positives = 304/588 (51%), Gaps = 72/588 (12%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DPITRIEGH++ E + D + +A GT+FRG EI ++ RDPRDA +RIC Sbjct: 2 QKIVIDPITRIEGHLKIEATV-DGGEVKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRIC 60 Query: 77 GVCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 GVC H + ++ A G+ K+P+N I+RN++ + H+VHFY LA +D++DV Sbjct: 61 GVCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDV 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGI---FRNGYWGHPQ 191 +E+A + P+ V++ + + + G + + F Y G Sbjct: 121 -----------TEVADYDGTDPE-----LLKVKDFIARALAAGDMSMLAPFYPRYEG--D 162 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVG 250 Y+LP + AHY+EAL+ +R ++ A++ G+ PH +V GG+ +ID + Sbjct: 163 YRLPKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAGGVTSHPSIDSISSF- 221 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDI 310 M +LN ++ FI+NV +PD +A+ + + IG G + +LSYG F Sbjct: 222 ---MSKLNTLRH-------FIDNVYLPDVIAVAETYPDYFGIGVGCGN--LLSYGVFDLE 269 Query: 311 AN--DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 AN + + L G V D L + DP ++ E + + W++ + +P + Sbjct: 270 ANGTNLATRQRLFTQGTVSASD----LTLHTFDPNKITEDIKYGWFK---GETNEYPLNE 322 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 +T+P + + E YSW+KAPR+ EVGPLAR ++ Y GD Sbjct: 323 VTEPDHT---------------KAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQ 367 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + V+ ++ + + STLGR RA E + A ++ K + LK G A E Sbjct: 368 KMVNDTLAHFGAGPAALFSTLGRHAARALECKIVADEMV----KWVMELKIGEPVCADYE 423 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 P G+G EAPRGALGHW I + KI YQCVVP+TWN SP+D +G G Sbjct: 424 ------IPESAEGMGLWEAPRGALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPV 477 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E AL+ TK+ + P E++R + SFDPCLAC+ H++ G+E+ +V Sbjct: 478 EQALIGTKVRDNDNPFELVRIVRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 195/578 (33%), Positives = 282/578 (48%), Gaps = 105/578 (18%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R++VVDP+TRIEGH++ EV + D N + +A S G +FRGLEIIL+GRDPRDA +RIC Sbjct: 5 RKIVVDPVTRIEGHLKIEVEL-DGNRVHDAWSTGLLFRGLEIILKGRDPRDAQHITQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GV H ++SV ++DA GI P N I+RN++ H++HFY LA +D++ Sbjct: 64 GVUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYV---- 119 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 P+++P F Y G Y+LPP Sbjct: 120 -----------------KGPETAP---------------------FVPRYEG--DYRLPP 139 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + + HY++AL +R+ ++ A+FG K PH + G G V E+ Sbjct: 140 DVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPG----------GVTSTVTAEQ 189 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDI-ANDFG 315 + + FI+NV IPD LA+ + W +G G K +LSYGA+P D Sbjct: 190 VEAYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVG--TKNLLSYGAYPLTDEKDPN 247 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 K+L G G F +P+ ++E V H+WY + G+HPF+G T P Sbjct: 248 GKNLFFTRGVYAGGSF---MPMSA---DHIREHVTHSWYE--SKAGGKHPFEGETVP--- 296 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 ++++ YSWIKAPR+ + EVG LAR + D + D+ Sbjct: 297 ------------AVDKRGGYSWIKAPRYESYSCEVGALARQWVGR---DPQVIGLGDKAF 341 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 S +GR RA E K+ + + L+ G A + P Sbjct: 342 S-----------VMGRHFARAIETT----KVAHAMLGWLEELEPGQPA------FRPHDV 380 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + +G G TEAPRGALGHW I + I YQ VVP+TWN PRD KG G E AL+ T Sbjct: 381 PEKAKGFGLTEAPRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALVGT 440 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELIS 593 ++A P+ P+E++R + +FDPC+AC+ HV+ G +S Sbjct: 441 EVADPDNPIELVRIVRAFDPCIACAVHVMEVRGGSGVS 478 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 296 bits (757), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 194/565 (34%), Positives = 277/565 (49%), Gaps = 75/565 (13%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 +DP TRIEGH+ +N+ + N + +A G M RG E ILQGR P DA V+RICGVC Sbjct: 7 LDPFTRIEGHLAVSLNVQN-NRVKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRICGVCP 65 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 H +ASV A E A GI++P+NA + RNIMLA+ + H+ HFY L+ +D+ID+ L Sbjct: 66 VSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDITAILDY 125 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHPQYKLPPE 197 K + +QN +K + L F Y G +Y + Sbjct: 126 ----------------KGGDAFLLAMQNWVKAELASKNLFPAAPFLPRYQG--RYLKDVD 167 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 N+ +Y AL+ + ++ A+F GK PH IV G G V +++ Sbjct: 168 FNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPG----------GITEKVTTKKI 217 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 +S + + FINN D LAI + IG + LS+GAF D AN EK Sbjct: 218 IQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGN--FLSFGAFGD-AN--LEK 272 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 S L+P GA++ G V D ++E D ++ +Y +D Sbjct: 273 SPLLPAGALLQGKLEEV------DDISIKE--DVSFSKYSSD------------------ 306 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 G + + + ++ YSWIKAPR+RG AMEVGPLAR ++A KG+ E+ + + Sbjct: 307 --SGREKTVPEPHKSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAFLQK 364 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 +L L+ + S LGR + R E + K + + ++L + P Sbjct: 365 TDLSLTDLDSCLGRHIARFIELEVIIEKCEEWMEQLRPDQPTA----------VDFNIPQ 414 Query: 498 ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKM 557 + G G EAPRGALGHW I KI Y+C+VPTTWN SP+D K G E +L+ T + Sbjct: 415 QAEGRGMMEAPRGALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGTIV 474 Query: 558 AIPEQPLEILRTLHSFDPCLACSTH 582 A PLE R + S+DPCLAC+ H Sbjct: 475 ADKTNPLEAARIVRSYDPCLACAVH 499 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 285 bits (729), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 196/567 (34%), Positives = 290/567 (51%), Gaps = 66/567 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + P+TRIEGH+ + + + V+ +A G MFRG EI+L+GRDP D+ +RICG Sbjct: 2 KIDIGPVTRIEGHLNVQTTV-ENGVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA+AS YA EDA + VP N I+ N++ +DHL+HFYQL +D++D+ Sbjct: 61 VCPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAV 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 L+ R EL++ + W K+ + K++ L Y + + Sbjct: 121 LEYTGRDP-ELSK-VRDWVKAE-------VDSGKRYPAAPFLPRLDGKYLDNR------D 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANL +YL A++ +++ + A+FGG+ PH I G G +++ + Sbjct: 166 ANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPG----------GCTQNASIDLI 215 Query: 258 NLVQSIITRTADFINNVMIPDALAI-GQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 QS+I DFI+ IPD LA+ G F + W EIG S LSYG P + Sbjct: 216 LAYQSLIREVRDFIHLKYIPDVLAVAGAFPEYW-EIGQ--SKGGFLSYGHMP-LGPARNS 271 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + LL PG V+ GD + V+ ++++ V+HA Y ++ R D P Sbjct: 272 ERLLAPG--VLLGD-----QLSAVELGKIRQDVNHALYSSASNLTVR-------DAAIVP 317 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES-VDRMM 435 KG E YSWI APR+ G +EVGP AR ++ Y +G ++ V+R Sbjct: 318 QPDKGG----------EAYSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFA 367 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 N+ + + S LGR L RA A A D ++ + + A + + +P Sbjct: 368 GHANISANQLNSVLGRHLSRAILAAVIA-------DFVLAESERLDPAAPTMAELDP--- 417 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P G G TEA RGAL H+ I + KI Y+CVVPTTWNASPRD +G GA E+AL+ T Sbjct: 418 PASGEGFGITEASRGALLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGT 477 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTH 582 ++ PE+ +E R + SFDPCLAC+ H Sbjct: 478 RVQNPEEQIESKRIVRSFDPCLACAVH 504 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 282 bits (721), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 175/494 (35%), Positives = 252/494 (51%), Gaps = 45/494 (9%) Query: 102 NANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSS-P 160 NA IR+++L+TL HDH+VHFY L GMDWIDV+ AL ADP K ++ A S+ P ++ Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIH 220 G VQ +++ V G LG F N YWG+P YK PE NL+G +HYL+AL+ QR + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 221 AVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 A++GGKNPHP I VGG+ C ++ ++ RL + A+F+ D Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDM--------LDPARLQEFKQKFQHVAEFVERAYYADL 172 Query: 280 LAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDL 339 + + ++ G + ++ + +D L G + N D ++ + Sbjct: 173 VMAAKAYATSPDVLGGCNVHTFMAAESILLNPDDH-----LFTDGVIRNCDLSH---AEN 224 Query: 340 VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDT-NIQQLNEQERYSWI 398 VDP ++E V HAWY Q HP+DG T P P + + NI +NE +YSW+ Sbjct: 225 VDPSLIEEDVTHAWYDAKQPQ---HPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWV 281 Query: 399 KAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHE 458 K+PR+ G +EVGPLA + Y +G+ V+ VD ++ LP + +TLGR R Sbjct: 282 KSPRYNGEPVEVGPLATIAVNYARGNKPVVDVVDEFLTKTGLPAQALFTTLGRTAARMLH 341 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP-TECRGVGFTEAPRGALGHWAA 517 A F+ ++ NL + T +P P E +GVG EAP + Sbjct: 342 TTVIARHGLETFESMVANLNSDQ-----TTYIKPTIDPDKEYKGVGILEAPLSS------ 390 Query: 518 IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 C P P D G+IG YEA+L+ K+A P +PLEILR +HSFDPC+ Sbjct: 391 ---------GC--PNNLERWPYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCM 439 Query: 578 ACSTHVLGDDGSEL 591 ACS HV+ G L Sbjct: 440 ACSVHVMDYKGQSL 453 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 181/571 (31%), Positives = 273/571 (47%), Gaps = 65/571 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+V+DP++R+EGH++ E I D VIT A + G +FRGLE L G D R A +R+CG Sbjct: 4 RIVIDPLSRVEGHLKIETTIKD-GVITEARAAGLLFRGLEKALIGYDARVAQQVTQRVCG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA A+ A+E A+GI+ P N ++RN++ HD L+HFY L+ +D+ID+ Sbjct: 63 VCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIKKV 122 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK---- 193 L+ R + + + W ++ + R ++ G P+Y+ Sbjct: 123 LRY--RGSDPVLNRVRDWVQA--------ELRSERIFPGAPF---------LPRYRDDDQ 163 Query: 194 -LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +L+ +Y + ++ K+ A+FGGK PHP + I+ G Sbjct: 164 SWDQSDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHP----------VAIEAGGVTTRP 213 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 + L ++++ R F+ D + + + + G G + +FP + Sbjct: 214 TLGMLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLL-----SFPFLPE 268 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 GE L GGA + G++ L +D + F YR P P + Sbjct: 269 ADGENHLFA-GGARLAGEYRQ-LELDAISEDHTFSF-----YRQPEPS----PLAPLATH 317 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 P + + ++L+ +YSWI+APR+ G MEVG +AR + +YH + A E VD Sbjct: 318 LLTPLNRQEFQAENERLD--GKYSWIRAPRYHGEVMEVGAVARVINSYHH-NRAVKEEVD 374 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 R L L L+ S +GR L R A +L+ D+ +K+G L + E Sbjct: 375 RTNRELGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQ----VKDGVLGFSELE---- 426 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 P GVG TEA RGALGHW A +G I Y+ V+P+TWN SPRD G+ GA E Sbjct: 427 --VPRNAVGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKM 484 Query: 552 LMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 L T++ PEQPLE R S DPC+ACS H Sbjct: 485 LQGTRIKNPEQPLEAARIARSADPCIACSVH 515 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 177/562 (31%), Positives = 266/562 (47%), Gaps = 97/562 (17%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DP+TRIEGH++ EV + + V+ +S G M+RG E IL+GRDPRDA V+RICGV Sbjct: 19 IAIDPVTRIEGHLKAEVVVENGKVVDARLS-GGMYRGFETILRGRDPRDASQIVQRICGV 77 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H+ ASV A+++A G KVP+N I RN++ + H++HFY L+ D++ D Sbjct: 78 CPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPDTA 137 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 PR +PKS +L E Sbjct: 138 PFVPR-----------FPKSD--------------------------------LRLSKEL 154 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 N G Y+EAL+ +R ++ A+FGG+ PH V G GA E+L Sbjct: 155 NKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVG----------GATEIPTKEKLV 204 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 + + DF+ +P IG K ++G G K L GAFP ++ G+K Sbjct: 205 EYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGF--KAALCVGAFP--LDNSGKKH 260 Query: 319 LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGD 378 L MPG D +P D P +++E+V ++W+ + G + +G T P D Sbjct: 261 LFMPGVYAKGKD----MPFD---PSKIKEYVKYSWF--AEETTGLNYKEGKTIP---APD 308 Query: 379 VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM--MS 436 G+ YS++KAPR+ G ++EVGPLAR + + + + + +S Sbjct: 309 KAGA------------YSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGIS 356 Query: 437 ALNLPLSGIQ---STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 A G + S +GR + RA E + G ++ + + +K G PA Sbjct: 357 AKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGW----LKEIKAGEDTVVM-----PA 407 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 P G GFTEAPRG+L H+ ++D KID YQ V + WN +PRD GQ GA E AL+ Sbjct: 408 V-PASAEGTGFTEAPRGSLLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEALI 466 Query: 554 NTKMAIPEQPLEILRTLHSFDP 575 + + P+ + R + +FDP Sbjct: 467 GIPVDDIQNPVNVARLIRAFDP 488 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 180/572 (31%), Positives = 263/572 (45%), Gaps = 114/572 (19%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 G+++V++P TR G + EV + VI +A T+FRG E+IL+ RDPRDA Sbjct: 5 TEKGQKIVINPTTRTLGASQVEVRVEAGRVI-HARCGATVFRGFELILRDRDPRDAAYIT 63 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +RICG+C HA+A+ +A+ED G++ P N N++RN++ A +H+ HFY A D++ Sbjct: 64 QRICGICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYV 123 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 + P T++ Y Sbjct: 124 RGPECRPLVPPPTTD--------------------------------------------Y 139 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +LP N Y +A+D R+ +I A+ GGK PHP+ I+ G +V Sbjct: 140 RLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPG---------GSSVPVT 190 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 + LNL+ SI+ F+ M+PD + + + EIG +D L++G FP Sbjct: 191 AITVLNLL-SIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGAD--FLNFGLFPLDPE 247 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 G PG AVI+G ++ VD ++ E H Y + + HP G T P Sbjct: 248 ASGHH---FPGAAVIDGR------MEAVDSGEISE---HLRYTHFEGEQLAHPARGETRP 295 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 NP G YSW KAPR+RG A+E GPLA+ + +GD SV Sbjct: 296 --NPDKPGG-------------YSWCKAPRYRGRALEGGPLAQLWV---RGDYRRGVSV- 336 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 + R++ RA ++ AG ++ K +T L+ G + E Sbjct: 337 ----------------MDRLIARALISREVAGLMR----KWLTALRPGQPVFNRYQVPES 376 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 T GVG T A RG LGHW + G+I YQ V PT WN SP D +G G E AL Sbjct: 377 GT------GVGLTGAMRGGLGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEAL 430 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + T +A ++P+EI R LHSFDPC++C HV+ Sbjct: 431 IGTPVADAKEPVEIGRVLHSFDPCMSCVAHVI 462 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 187/586 (31%), Positives = 286/586 (48%), Gaps = 79/586 (13%) Query: 12 INNAG--RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 +N +G +R+ +DP++R+EGH++ E + D VIT A + G +FRGLE L G D R A Sbjct: 1 MNESGTSKRITIDPLSRVEGHLKIETRVED-GVITQARAAGLLFRGLEKALIGYDARVAQ 59 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 +R+CGVC HA A+ A+EDA+GI+ N ++RN++ HD L+HFYQL+ + Sbjct: 60 QVTQRVCGVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSAL 119 Query: 130 DWIDVLDALK---ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY 186 D+ID+ L DP + ++ W + + R + G Sbjct: 120 DFIDIEAVLAYKGGDP-----VLAAVRQW--------VEEEVRSSRIFPGAPF------- 159 Query: 187 WGHPQYK----LPPEAN-LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI 241 P+Y+ LP + + L+ +Y ++ K+ A+FGGK PHP + Sbjct: 160 --LPRYRHDDQLPGDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHP----------V 207 Query: 242 NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCV 301 I+ G + L ++++ R F+ D ++ + + + G G + Sbjct: 208 AIEAGGVTTRPTLGMLAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGN--F 265 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV 361 LS+ P+ D + L GGA++NG+ P++L + E +A+YR + Sbjct: 266 LSFPFLPEADGD----NHLFAGGALLNGEHQ---PLEL---DAINEDHTYAFYRQQS--- 312 Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQER---YSWIKAPRWRGNAMEVGPLARTLI 418 G P + D Q EQ + YSW +APR+RG MEVG AR + Sbjct: 313 ------GTALPPLATSRLTPLDWQEFQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVN 366 Query: 419 AYHKG-DAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 +YH+G + A E VD L + ++ S +GR L R A G+L+ + + + Sbjct: 367 SYHQGGNQALKELVDHTNRELGITVADYNSVMGRHLSRYLSAALIIGRLK----EQLEMV 422 Query: 478 KNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNA 536 K+G L +E P RGVG TEA RGALGHW +DG I Y+ VVP+TWN Sbjct: 423 KDGVLG------FEEREVPRNARGVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNF 476 Query: 537 SPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 P+D G+ GA E L+ T+++ PEQPLE R S DPC+ACS H Sbjct: 477 GPKDAAGKPGAVEKMLLGTRISNPEQPLEAARIARSADPCIACSVH 522 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 185/589 (31%), Positives = 273/589 (46%), Gaps = 111/589 (18%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ +DP+TR+EGH++ EV + D V+ +A G MFRG E IL+GRDPRD+ V+RICG Sbjct: 14 KISIDPLTRVEGHLKIEVEVKDGKVV-DAKCSGGMFRGFEQILRGRDPRDSSQIVQRICG 72 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC H ASV A +DA G+KV N I RN++ + H++HFY LA +D++ D Sbjct: 73 VCPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYHLAALDYVKGPDV 132 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 PR + A L+ +R+K + Sbjct: 133 SPFVPRYAN--ADLLT--------------DRIKDGAKADA------------------- 157 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPH-PNWIVGG---MPCAINIDESGAVGAVN 253 N G YL+AL+ +R ++ A+FGG+ PH +VGG +P A + E A Sbjct: 158 TNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIPTADKVAEYAA----- 212 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 R VQ F+ +P +G E G G K V+++G FP+ D Sbjct: 213 --RFKEVQK-------FVIEEYLPLIYTLGSVYTDLFETGIGW--KNVIAFGVFPE---D 258 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 K+ L+ G I+G D + V+E+V H+++ + + G H G T+P Sbjct: 259 DDYKTFLLKPGVYIDGKDEE------FDSKLVKEYVGHSFFDH-SAPGGLHYSVGETNP- 310 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 NP D G+ YS++KAPR++ EVGPLAR + + Sbjct: 311 -NP-DKPGA------------YSFVKAPRYKDKPCEVGPLARMWVQN--------PELSP 348 Query: 434 MMSALNLPLSGIQ------------STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 + L L GI+ S +GR + A E A ++ K + ++ G Sbjct: 349 VGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLVAEETWLTAVAVE----KWLKQVQPG- 403 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 E + + P G GFTEAPRGAL H+ I+D KI+ YQ V T WNA+PRD Sbjct: 404 -----AETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDD 458 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 GQ G E AL+ + + P+ + R + S+DP L C+ HVL + E Sbjct: 459 MGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPULGCAVHVLHAETGE 507 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 240 bits (612), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 167/586 (28%), Positives = 274/586 (46%), Gaps = 122/586 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V++P+TRI G M +V I + N + +A + G +FRG E +L GR P DA F +RIC Sbjct: 3 KKIVINPLTRISGFMEIDVYI-ENNRVVDAKTKGHLFRGFEQMLVGRSPFDAVYFTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H++AS A+EDA+ I + +R+I+ + +H+ HFYQ D++ Sbjct: 62 GICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYV---- 117 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 K F+ H ++LP Sbjct: 118 --------------------KLESNSLFNTD---------------------HHDFRLPK 136 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNME 255 + N HY E+L++ R ++ A+ GGK PH + + +GG+ + A N+ Sbjct: 137 QINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIGGI--------TTQATAENVV 188 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 +L+ I+R FIN+ MIPDA I + + +G G + +L+YGAF N++ Sbjct: 189 KLDDSLQKISR---FINDKMIPDAYDIAAYYSDYYRLGGGYGN--LLTYGAF----NNYK 239 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQ---VQEFVDHAWYRYPNDQVGRHPFDGITDP 372 + L + + NN +LV+P Q ++E +D++WY+ N P + +P Sbjct: 240 DLGTLYVDPLISKMNANN----NLVEPFQEKNIKEKIDYSWYKASN--AAYRPDSEMAEP 293 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA--YHKGDAATVES 430 ++NE+ YSW+KAPR+ G EVGPLAR +++ Y G +A Sbjct: 294 -------------DMEMNEKA-YSWVKAPRYEGLPFEVGPLARLILSGEYQNGISA---- 335 Query: 431 VDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 + R L RA EA+ ++ ++ N+ + Sbjct: 336 ------------------MDRTLARALEAKKICEIMKELLHSVIPNV----------DLQ 367 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 + P + G G + RGALGHW + + KI YQ + P+TW+ S +D G G E Sbjct: 368 KAYEIPEQASGRGLVDTIRGALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEE 427 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 AL+ T + P P E+ R L SFDPC++C+THV G ++ +++V Sbjct: 428 ALIGTPINDPNNPAEVGRILRSFDPCMSCATHVYS-PGKQMKTIKV 472 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 238 bits (607), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 111/158 (70%), Positives = 126/158 (79%) Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 LP + STLGR RA E+ WA LQYFFD+LM NLK+G+ ATA+ WEP TWPT Sbjct: 110 LPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSA 169 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 +GVGF+EAPRGALGHW I + KID YQCVVPTTWNA PRD KGQIGAYEAALM TK+A+ Sbjct: 170 KGVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAV 229 Query: 560 PEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 P+QPLEILRTLHSFDPCLACSTHV+ + G EL+ VQVR Sbjct: 230 PDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQVR 267 Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/181 (50%), Positives = 122/181 (67%), Gaps = 24/181 (13%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M+ Y+TQG+T++N+GRR+VVDP+TRIEGHMRCEVNI+ NVITNAVS GTM+RGLE+IL Sbjct: 1 MAYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM---------- 110 +GRDPRDAWAFVERICGVCTG HAL S+ A+E+A+GI +PDNAN IR + Sbjct: 61 KGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRKKLPKEALFSTLG 120 Query: 111 ------LATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQ-SLSSWPKSSPGYF 163 L ++W + L +F+ ++ LK+ T+ + +WP S+ G Sbjct: 121 RTAARALESVWAGNTLQYFFD-------RLMRNLKSGDTATANVTLWEPDTWPTSAKGVG 173 Query: 164 F 164 F Sbjct: 174 F 174 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 224 bits (571), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 169/572 (29%), Positives = 278/572 (48%), Gaps = 71/572 (12%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ +DP+TRIEGH++ E I D +VI A M+RG+E L+G D A +R CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIED-SVIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 C HA A+ AIE+A+ I++ N ++RN+++ D+++HFY L+ +D+I++ D Sbjct: 61 CCPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDI 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFV--EGGQLGIFRNGYWGHP---QY 192 L + G FD+ LKK+V E +F N + Y Sbjct: 121 LNYN-------------------GNDFDML-ELKKYVLKEISSKKVFPNPLFSQKYKNAY 160 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 + N+ HYL++ + +++ ++ +FG K+ H + I+ G Sbjct: 161 IKNKDLNITLINHYLKSFEAMKKMSEMVKIFGSKSTH----------MVTIEAGGVTTRP 210 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 ERL S+ + FI + IPD L + + K + +IG G+ + + F + N Sbjct: 211 TAERLVKYISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDN-----FLTFDTLLN 265 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 G S L GG + ++ + ++P + E+ ++A+Y+ + G P + Sbjct: 266 LDG--SYLFTGGFSKDFEYE-----EGIEPYNIIEYNNYAYYK---ENGGYKPLELTELT 315 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG-DAATVESV 431 + K + T +YSW KAPR++G+ +EVGP A + Y +G D + V Sbjct: 316 PLTFDEFKQNHT---------KYSWSKAPRYKGHVVEVGPAAIVINNYLRGKDEKLISLV 366 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 D+ L + + S +GR L RA ++ K+ D LM ++ G L +K Sbjct: 367 DKFNRELGIDIKDYNSVMGRHLSRAIISKLIIDKI--IEDSLM--VEEGKLGFIQLKK-- 420 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 P+ +G+G TEA RGAL H+ I +G I Y+ +VPTTWN SP+D + GA E+ Sbjct: 421 ---PPSNVKGIGLTEATRGALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALES 477 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 L+ T++ P+EI R + S DPCLAC+ H Sbjct: 478 MLIGTEIRDINNPVEIARIIRSTDPCLACAVH 509 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 222 bits (566), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 173/564 (30%), Positives = 247/564 (43%), Gaps = 117/564 (20%) Query: 23 PITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGV 82 P+TRI +R EV++ V+ +A +FRG+E++L GRD RDA FV+RICG+C+ Sbjct: 8 PVTRIHEPIRVEVDVQGGRVV-DAWIGACLFRGVELMLTGRDVRDAPLFVQRICGICSSA 66 Query: 83 HALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADP 142 HA+A+ A+ A ++ + N+++A + +HL HFY L D++ D+ P Sbjct: 67 HAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGPDSAPFFP 126 Query: 143 RKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMG 202 R + ++LP + N Sbjct: 127 RTKGD--------------------------------------------FRLPKKLNDEL 142 Query: 203 FAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQS 262 F H ALD ++ A+FG K PH I MP +G N ERL + Sbjct: 143 FGHVRPALDLAARAHEMMALFGAKAPHQQTI---MP-------TGVTERANAERLMAYGA 192 Query: 263 IITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMP 322 I+ +++ V + D L I ++ + + IG G LSYG FP+ G P Sbjct: 193 ILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGH--FLSYGGFPEP----GTGQPAFP 246 Query: 323 GGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGS 382 G V NG P+DL ++ E + H WY+ +DQ RHP +G T Sbjct: 247 VGLVENGGLPQ--PLDLT---RITEHIHHGWYQ--DDQESRHPIEGRT------------ 287 Query: 383 DTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA--YHKGDAATVESVDRMMSALNL 440 ++ YSW KAPR+ E GPLAR I+ Y +G Sbjct: 288 ---AAAPDKSAAYSWCKAPRYGRLPAETGPLARAWISGEYRRGI---------------- 328 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR 500 S + R++ RA EA K+ + + + G A P T P Sbjct: 329 ------SVMDRLIARAREAL----KICRLAQEWLARIAPGAPTLA------PYTLPPRGE 372 Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 GVG EA RGALGHW +GKI YQ V PT WN SPRD GQ G E AL+ T +A P Sbjct: 373 GVGLLEAMRGALGHWLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPIAAP 432 Query: 561 EQPLEILRTLHSFDPCLACSTHVL 584 E +E+ R + SFDPC C+ H++ Sbjct: 433 ESLIEVGRVIRSFDPCFTCAAHLI 456 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 220 bits (560), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 164/583 (28%), Positives = 265/583 (45%), Gaps = 117/583 (20%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + +DPITRI G + +V + D N+I + + G +FRG E +L+GR P D+ F ERI Sbjct: 2 GKIITIDPITRISGFLEIKVKVED-NIIVDGETSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ HA AS A+E+A+ I N IR++M + +HL FY ++++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + P++ S+ ++LP Sbjct: 121 NIRPIYPQEYSD--------------------------------------------FRLP 136 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + N +HY E + + R + AV GGK PH + I VGG+ +NID Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGV--TVNIDSY-------- 186 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 +L +QSI+ F+N M+ D I Q+ + +G + +S+G F + + Sbjct: 187 -KLTKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGN--FMSFGVF----DKY 239 Query: 315 GEKSL-LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 +K++ + G +IN N D ++ E + +AW Y +D + +P I + Sbjct: 240 KDKNISYVKPGVIINNKLEN------FDRDKITENIRYAW--YVSDTIIENP---IMNNE 288 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 Y L ++ YS++KAPR+ MEVGPLAR IA G+ Sbjct: 289 YT-----------VDLKKEGAYSFVKAPRYADLPMEVGPLARLKIA---GE--------- 325 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 +G S++ R + R E + L +K+ L N A Sbjct: 326 --------YTGGNSSMDRNIARVLETKKIINILYNISEKIQL-LSNNQSA---------Y 367 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 P G G + RGAL H+ I + I Y + PT WN SP+D KG G E +L+ Sbjct: 368 NIPEGAFGEGLIDTTRGALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLI 427 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +K+ E+P+EI R + SFDPC++C+TH++ ++ +E + V+V Sbjct: 428 GSKIDNIEKPVEIGRIIRSFDPCISCATHLVSNN-NEPVKVEV 469 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 160/571 (28%), Positives = 252/571 (44%), Gaps = 114/571 (19%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRI G ++ EV++ + N I +A S G+ FRG E + QGR P D RICG Sbjct: 3 KIVIDPVTRISGLLKIEVDV-ENNKIVDAKSTGSQFRGFEKMFQGRPPLDIIRLAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ HA+A+ A+E+A+ I N +IR+I + +HL Y A D++ + Sbjct: 62 ICSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKIT-- 119 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 S+P ++++G Y+LP + Sbjct: 120 -------------------ASNP--------------------LYKDGTDKELDYRLPED 140 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMER 256 YLEA+ + RE + AV GK PH + I VGG+ I++ E +V Sbjct: 141 ITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEKESV------- 193 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + IT +FI N ++ D I Q+ + +G G + ++ +G + +D+ Sbjct: 194 ----KYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGN--LMDFGLY----SDYKA 243 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD-PWYN 375 A+ING N+ D + E V +++ P V G++ P N Sbjct: 244 PIKYTEASAMINGKKENI------DVNNITENVKYSYLDIPGGMV----MPGVSSTPEPN 293 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P +Q+ YSW+ A R++ +ME GPLAR + Sbjct: 294 P-------------YKQDAYSWVDAARYKNYSMEGGPLARQI------------------ 322 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 LN S + RIL R E+ + D + L A E+W+ Sbjct: 323 --LNGYYENKISAMDRILARVLESVKICESIIGLIDLM-------KLGQAVQEEWQ---I 370 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P++ G+G APRGALGHW +I + ++ Y + P+ WN SP D G EAAL+ T Sbjct: 371 PSKVNGIGLIGAPRGALGHWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGT 430 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 ++ + P+EI R + SFDPC C+ HV D Sbjct: 431 EINDMKNPVEIGRIVRSFDPCSNCAAHVTSD 461 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 189/640 (29%), Positives = 279/640 (43%), Gaps = 141/640 (22%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+ +DP+TR+ +R + D IT+A S G ++RGLE +L GR P DA F +RICG Sbjct: 2 RITIDPVTRLSSGLRVTAELTD-GAITSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 +C+ HA ASV AIE A G +P +A ++RNI+ W +H+ H Y +A M D+ Sbjct: 61 MCSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLY-MAFMP--DLA 117 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 D + D +S L L W + Y V GGQ Sbjct: 118 DPVYGDALNSSSLGNLL--WQELKERYA----------VSGGQ----------------- 148 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNP-HPNWIVGGMP-------------CAI 241 Y EAL REI + V GG++P P + GG+ C Sbjct: 149 ---------AYGEALRCIREIGRAEGVLGGRSPCSPAIVPGGVTVRPARGDIGALETCLE 199 Query: 242 NID---ESGAVGAVNMER--LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI---- 292 NID + VGA+ + N D+I ++ + D A +K W ++ Sbjct: 200 NIDGFLQKRLVGAMTIGEWLANTHDQDAGFGYDYIEHLPMGDLSA----SKGWGDLPLFM 255 Query: 293 ------------------------GTGLSDKCV--LSYGAFPDIANDFG----------E 316 G L D+ + LSYG+F + ++ G + Sbjct: 256 MFFSRMFARDVLSLPAYIGLDDAGGYPLDDQLIGFLSYGSFYRVRDESGRLKDGYGTVED 315 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + MP G G N L D VDP + E V ++Y Y +++ P DG T P Sbjct: 316 GAFEMPAGFTPGGMQNIYLAADRVDPNLIVEHVAASFYDYSEERLSEAPLDGETVP---- 371 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM-- 434 G ++I+ + RYS+IKAPR+ EVGPLAR + + ++ ++++ R+ Sbjct: 372 ---AGRASSIEL--DGARYSFIKAPRYGRVPCEVGPLARQI---NSRESLIIDAMRRLYS 423 Query: 435 --MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 MS N P++ + + R + R E + L + D L +++ + P Sbjct: 424 RNMSVTNYPMASVYT---RTMARMQETLLISRMLHEWLDDL-------HVSDERQKYCVP 473 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 + G G EAPRGALGHW I +D KI YQ V PTTWNASPR + + G E A Sbjct: 474 VSVKPNRTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTWNASPRCSEQKSGPMELA 533 Query: 552 LMNTKMA----IP---EQPLEILRTLHSFDPCLACSTHVL 584 L+ +P P+ I + SFDPC AC+ H + Sbjct: 534 LLGCSTTPSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 204 bits (518), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 167/586 (28%), Positives = 254/586 (43%), Gaps = 113/586 (19%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 RR+ + + R+EG + E+ I + ++T+A GTM+RG E IL GR P DA A RI Sbjct: 2 SRRIKLQ-LNRVEGDLEIELEIKN-GIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ H ASV A+E I P NA +RNI L + Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICLLS---------------------- 97 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + +++D R+T SS D Q+ + KF + Sbjct: 98 EEIQSDCRQT--FLMFTPDLCHSSYSTLNDYQSIVAKFQD-------------------- 135 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 M Y +A+ F R+I++I A+FGG+ PH +++V G ++ ++ Sbjct: 136 -----MQGELYQDAIRFSRDIIEIVAIFGGQWPHSSYMVPGGVTSLPDRRKVINSLAQLQ 190 Query: 256 RLN--LVQSII-TRTADF--------INNVMIPDALAIGQFNKPWSEIG---TGLSDKCV 301 R I+ T AD+ +NN AI ++ ++G G + + Sbjct: 191 RYTQWFEHKILGTSLADWSRITSLAELNNFTQSSDSAIAILHRFCRDMGLDSVGSGSEKM 250 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAV-INGDFNNVLPVDL-VDPQQVQEFVDHAWYRYPND 359 +SYG+ D N P + +G +N L +D ++ E + +WY + Sbjct: 251 ISYGSLIDPEN---------PQERIRSDGTYNYKLKKHAPLDESKITEDITSSWY-HDES 300 Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 Q RHP G+T P Y+P + E+YSW KAPR+ + ++ GPLA+ +A Sbjct: 301 QTARHPMQGLTQPKYDP--------------DSEKYSWAKAPRYDKDVIQTGPLAQLAVA 346 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 D ++ L++ ST R R H + L+ L+ L Sbjct: 347 K-----------DPLI--LDMLAQNGSSTWTRQFARIHRQASSLIILKDQLSSLLECLDA 393 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPR 539 + E E GVG EA RG+LGHW I DGKI +Q + PT WNASPR Sbjct: 394 PTMIHCPLEDGE---------GVGMIEAARGSLGHWLKIEDGKIKNFQVITPTAWNASPR 444 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 D Q G E +L+ M ++P+EI + S DPCL C+ H+LG Sbjct: 445 DINQQPGHIEQSLIGLPMPDLDEPIEIGHVVRSHDPCLVCTVHLLG 490 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 190/650 (29%), Positives = 271/650 (41%), Gaps = 170/650 (26%) Query: 18 RLVVDPITRIEGHMRCEVN-------INDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+V+DP+TRIEGH+R E++ + +V+ A GT+FRG E IL+GRDPRDAW Sbjct: 6 RIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRDAWI 65 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC HA AS+ AIE A + A +IRN++ + +DH++H Y L G Sbjct: 66 ITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILLG-- 123 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 EL P P G+ G+ + G Sbjct: 124 ---------------PELGVVCKYPPMVPPAL--------------GKEGVSKLG----- 149 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNP-HPNWIVGGMPCAINIDESGAV 249 +G + Y+ AL+ QR+ +I A++GGK P H + GGM D + Sbjct: 150 ----------IG-SSYVGALEIQRKANEIVAIWGGKFPHHQSEYPGGMAVRPTEDRIASS 198 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG------TGLSDKCVLS 303 A E V + + DF N ++ +G+ +I G S LS Sbjct: 199 LARMFEIWRWVAETMVK--DFYN--LLEANEKVGEAVSSLLDINFRGLQDVGASTGNFLS 254 Query: 304 YGAFPDIANDFGEKSLL----MPGGAVINGDF--NNVLPVDLVDPQQVQEFVDHAWYRYP 357 YG FPD N S+L A+I+ + P+D+ ++ E+V ++WY Sbjct: 255 YGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDGSSKPLDI---SKIAEYVRYSWY--- 308 Query: 358 NDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTL 417 +++ G +P K D N+ E YSW+KAPR+ G EVGPLAR L Sbjct: 309 DNESGLNP--------------KDEDAPKPDKNKSEAYSWLKAPRYDGKVYEVGPLARML 354 Query: 418 IAYHK------GDAATVESVDRM-MSALNLPLSGIQSTLGR----ILCRAHEAQWAAGKL 466 Y + T E LN S I R IL +W +L Sbjct: 355 NTYGTRWKIPIRNPVTGEDHGYFEYEVLNPKGSVIDRLAARVALTILTSQKVFEWLL-EL 413 Query: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLY 526 + + ++ +TN +N P E G G +APRG L H+ ++D KI Y Sbjct: 414 KSYTNQKVTNYRNV---------------PKEGEGFGLWDAPRGGLLHYIKVKDHKIANY 458 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNT---KMAIPE---------------------- 561 QCVVP+TWN SPRD GQ G E AL T +++PE Sbjct: 459 QCVVPSTWNLSPRDDFGQPGPVETALEGTWLPNLSVPEICNAIYPEKDVDLSALGLGAMS 518 Query: 562 ---------QPLEI------------------LRTLHSFDPCLACSTHVL 584 PL + L + SFDPC+AC+ HV+ Sbjct: 519 WGDALAAALTPLGLAELNIERLNGQIYNTSLTLMVVRSFDPCIACAVHVV 568 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 202 bits (514), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 166/582 (28%), Positives = 256/582 (43%), Gaps = 123/582 (21%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + V+ P TRI M E + + VI +A T++RG E IL+GR D + +RICG Sbjct: 17 KKVIFPFTRIHNPMLVEAYL-ENGVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRICG 75 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ VHA+A+ +A+E A+G+ VP N I RN+++ + + +H+ HFY ++ D+ D Sbjct: 76 ICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPDI 135 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 P +P D+ + E Sbjct: 136 ------------------PPFTPHLEGDI--------------------------RFNTE 151 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 N HY +A++ R+ VFGGK PH + IV G C +++D +++ Sbjct: 152 ENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPG-GCTMHVD---------ADKI 201 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF--PDIANDFG 315 N + + + +FINN MIPD + + + +G G + LS G F PD Sbjct: 202 NRFRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKG--NGNFLSVGGFTQPD------ 253 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 L P G V+ D + + E V AWY+ P HP+ G T+P Sbjct: 254 -GGTLFPHGVVLEDKHQPF------DDRLILEEVTTAWYK-PTPPA--HPWQGTTEP--- 300 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 N+ + Y+W+KAPR++G+A+EVGPLAR +IA K Sbjct: 301 ------------DKNQPQGYTWVKAPRYQGHALEVGPLARAVIAKEK------------- 335 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 + G TLGR R E + A + ++L+ + N Sbjct: 336 ------IIGY-GTLGRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQESGM----- 383 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G+G+ EA RG LGHW I G++ YQ + P+TWN S RD G E ++ Sbjct: 384 -----GIGYVEAMRGTLGHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGL 438 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 + PE E R + SFDPC +CS H++ DG +L ++ +R Sbjct: 439 TIKHPELK-EAGRVIRSFDPCFSCSVHLI--DGEQLRTLDIR 477 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 201 bits (510), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 164/577 (28%), Positives = 257/577 (44%), Gaps = 120/577 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ P+TR+ G + E+ + D+ I NA + GTMFRG E I++GR DA +RIC Sbjct: 3 KKITFSPVTRLSGLLSVEIVV-DRGKIVNARTRGTMFRGYEWIMRGRKVTDAVYMTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H Y +++ G + +NA +RNIM A + +H+ HFY D++ + Sbjct: 62 GICSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKM-- 119 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 P K L Q L+ +L Sbjct: 120 -----PEKPPFLGQDLNDL-------------------------------------RLNR 137 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E N +Y +A+ +E ++ A+FGGK P+ + V G G A ++ Sbjct: 138 EDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHG----------GVTVAPTADK 187 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +N +++I F+ MIPD I + + + +IG ++ ++S+G FP FG Sbjct: 188 INQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIG--VTPLRLISFGLFP-----FGP 240 Query: 317 KS--LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW- 373 ++ L P G +IN +F +L + ++E V +++Y ND+ G + F+ +P Sbjct: 241 QNDDYLWPPGVIINNEF------ELPQVEFIEEQVPYSYYE-ANDE-GENVFNQYPEPAP 292 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 + P E YS+IK ++G E GP AR +I +GD Sbjct: 293 FKP----------------EAYSYIKTVLYKGQHFETGPYARGVI---RGD--------- 324 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 G ST+ RI+ R+ EA AG F + +T L+ G E+ Sbjct: 325 --------YRGRASTMDRIVARSLEALKLAG----FIREWLTRLEPGPPPLNQNEE---- 368 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 P + R V T A RGAL H A I ++ Y + PTTWN SPRD G G E AL+ Sbjct: 369 --PVKDRAVATTGAMRGALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALI 426 Query: 554 NTKMAIPEQPLEIL-RTLHSFDPCLACSTHVLGDDGS 589 T++ I+ R + SFDPC++C THV DG Sbjct: 427 GTEIPGGAMLETIVGRIIRSFDPCISCGTHVYSIDGK 463 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 173/618 (27%), Positives = 278/618 (44%), Gaps = 90/618 (14%) Query: 17 RRLVVDPITRIEGHM--RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 R + DP+TR+ G + V++ + V++ S T+FRG E+IL+GRDPRDA R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTN-SMATLFRGYEVILKGRDPRDAAYISSR 109 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 CGVC GVHA + AIE A+ IK P ++RNI+LA + +DH +H + LAG D+ + Sbjct: 110 ACGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDYSEE 169 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGY--FFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 L + +P + A + + K GY D+ L G+L Sbjct: 170 L-VRETNPELIDKAATTKAK-NKDVHGYDTVLDIMKDLNPL--KGKL------------- 212 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGA 251 YLEAL R + + + GGK PHP +V GG+ +N V + Sbjct: 213 -------------YLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNASMLNEVYS 259 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 ++ + Q + D + + + +P + + TG+ D+ Y A + Sbjct: 260 RLIKFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRPD-HYDAKFENC 318 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWY------RYPNDQVG--- 362 + +GE PG +++G+ +L ++EFV+H++Y R+ D G Sbjct: 319 DTWGEARWSTPG-VLVDGEVVTTKLTEL--NAGMEEFVEHSYYEKWDGHRFKEDPNGMPL 375 Query: 363 --RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 HP++ T P PG D RYSW AP W ME G R + Sbjct: 376 SPNHPWNKETIP--KPGKQSWKD----------RYSWDTAPTWDRMPMEAGAYTRMYMTA 423 Query: 421 HKGDAATVESVDRMMSALN-------LPLSGIQ-------STLGRILCRAHEAQWAAGKL 466 A + ++ +++ LP ++ + R RA+ ++A Sbjct: 424 KAQKAPASKFLENTGTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVA 483 Query: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTE--APRGALGHWAAIRDGKID 524 + M +KNG+ + P P + +GF A RG L H I +G I+ Sbjct: 484 MENWMMAMDLIKNGDTKVSV-----PYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIE 538 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNT----KMAIPE--QPLEILRTLHSFDPCLA 578 YQ + P+T NA+PR P G++G YE A++NT K PE + ++ILR + SFDPC+ Sbjct: 539 NYQIITPSTLNAAPRTPWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMP 598 Query: 579 CSTHVLGDDGSELISVQV 596 C+TH++ D +++ +V Sbjct: 599 CTTHIMAKDSDHMVTREV 616 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 172/597 (28%), Positives = 253/597 (42%), Gaps = 130/597 (21%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + +V + D V+ A + GTM+RG E IL GR PRDA R+CG+C H Sbjct: 10 LNRVEGDLSIQVTLED-GVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCGICGTAH 68 Query: 84 ALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPR 143 A V A+E A VP NA IRN+ L + + L+ D R Sbjct: 69 LYAGVLALEQAWNTPVPPNATRIRNLCL----------------------IAEGLQNDLR 106 Query: 144 KTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGF 203 +T P+ + F+ R + +G Sbjct: 107 QTFLFFAPDLCHPRYAGDVLFEPMMRAFEPFKGDI------------------------- 141 Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 Y E L R +++I A FGG+ PH ++++ G G V + RL +S+ Sbjct: 142 --YRETLAMTRRVLEIVAHFGGQWPHSSYMLPG----------GVVTPPDTRRLIACRSV 189 Query: 264 ITRTADFINNVMI------------------------PDALAIGQFNKPWSEIGT---GL 296 I + + +I P A+G + G G+ Sbjct: 190 IDQLQRWYEQRIIGAGLDEWMALGSADALFEWLERPGPANAALGLITRFLRSQGMHRLGI 249 Query: 297 SDKCVLSYGAFPDIANDFGE--KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWY 354 ++S+GA+ D +G + L+PGG + D V P+D P V E V H+W+ Sbjct: 250 GTPHMISFGAWCD-PQRWGPPYDAHLLPGG-FYDSDSGQVQPLD---PSLVTEHVRHSWF 304 Query: 355 RYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLA 414 + + GRHP++G T P Y P + +RYSW KAPR+ G ++ GPLA Sbjct: 305 K--PYEGGRHPYEGETVPDYQP--------------DSDRYSWAKAPRYGGRVVQTGPLA 348 Query: 415 RTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 LI GDA R + A G + L R R + + + D+L Sbjct: 349 ELLIG---GDALV-----RDLHATE----GAGAWL-RQFSRVRRIGFELRQARRMLDELG 395 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTW 534 +L + + P T + +G G A RGALGHW I +G I YQ V PT W Sbjct: 396 AHLGEPHFVPPA-----PGT-EVDGQGCGLVMAARGALGHWVRIENGVIQKYQIVTPTAW 449 Query: 535 NASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSEL 591 NASPRD G G +E++L+ K+ P+ P+EI + S DPCL C+ H + D G +L Sbjct: 450 NASPRDSDGVPGHWESSLVGLKVQDPDDPIEIGHLIRSHDPCLVCTVHFV-DSGRQL 505 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 199 bits (505), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 162/568 (28%), Positives = 253/568 (44%), Gaps = 93/568 (16%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + L VDP+TRIEGHM E + V + G M+RG E +L GR P D+ +RIC Sbjct: 3 KLLTVDPLTRIEGHMSVETAVESGKV-SEVRIAGNMYRGFERMLLGRHPVDSARIAQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVC VH ++SV A+E GI P N I+R+++L DH++HFY L D++++ Sbjct: 62 GVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLSS 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A + + +++S W SS F +QNR EG + K Sbjct: 122 AAGYNGKDRD--LRNISDWLSSSGTAF--MQNR----TEGNYI-------------KDKD 160 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 A +Y EA+ + + A+ G K P +I MP I + + + Sbjct: 161 SARRFAL-NYFEAIKIRSQAAGGLAILGAKVP---FIHALMPGGITTE-------ITTDA 209 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 L + TA+F+++ +PD + I Q + +IG +Y F + Sbjct: 210 LMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGE--------AYNTFYAHQSFNSA 261 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 K L G + +G+ VD D +V+E + ++Y+ DG D Sbjct: 262 KGDLFTQGVIADGE-----KVDF-DYNKVKELIGSSYYKA----------DGSPDE---- 301 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 N + YSWIKAPR+ G +E GP+AR + G+ +S+ R + Sbjct: 302 -------------NAEGAYSWIKAPRYDGIPLETGPIARAAV----GNDEEFKSLLRRLG 344 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 ++ S +GR+L RAHE+ L ++ + G A + + P + Sbjct: 345 QKSIK----SSVMGRLLARAHESVMLCNYLYGRTEEYVI----GKPAIRAVDLQAPVSG- 395 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 G+GF+ A RGAL H GK+ Y+ +VP+TWN P G++G E A++ T Sbjct: 396 ---EGIGFSVAARGALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGTP 451 Query: 557 MAIP--EQPLEILRTLHSFDPCLACSTH 582 + +E+ R + SFDPC ACS H Sbjct: 452 VNYGGVSGSIEVGRVIRSFDPCTACSIH 479 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 197 bits (502), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 179/642 (27%), Positives = 280/642 (43%), Gaps = 129/642 (20%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ VDP+TRIEGH R +N++ VIT+A S G RG E +LQ +DPRDA +RICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 78 VCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 VC H +A+ A++D G+ +VP + ++RN+ A + H H Y L G D Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDL---- 118 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A+P LA+ + DV N + K ++G + Y+L Sbjct: 119 ----ANPAYRDILAK------------YGDVGNAVWKELQGRFAPLI---------YQLD 153 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + G ++ ++F+R I ++ K PHP VGG+ + + + G + + Sbjct: 154 GTSYPAGSSYLGSIVEFRRLHEAI-SLIASKMPHPVLQHVGGVVYSPTVADIGQILSYIT 212 Query: 255 ERLNLVQSII------------------TRTADFINNVM--------------------- 275 + + V++ + A+F+ N + Sbjct: 213 KTMEFVEAFTLGVSPDIWIENTYRASSPQKAANFVLNHLQELLNKSLDNKDFSHSAGWGD 272 Query: 276 IPDALAIGQFNKPWSEIGTGLSDKC-------------VLSYGAF--PDIANDFGEKSLL 320 +P A G +G +S K LSYG F P+ N + S Sbjct: 273 VPLFAAFGSELIGEKLLGLPISMKMDLAGTYKDPGKIGFLSYGVFFKPENGNGYDPTS-- 330 Query: 321 MPGGA--VINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGD 378 P + + +G N ++ D +++ E ++H++Y +D R P++G+T P NP + Sbjct: 331 -PADSRVISSGYMNGYFKLEKFDYKKISESINHSFYI--DDVKDRPPWNGVTVPEGNPEN 387 Query: 379 V---KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 + KGS + RYSW KAP + G EVGPLAR +I G+ V Sbjct: 388 IDYTKGS---------KSRYSWTKAPHYDGIPCEVGPLARMIIM---GEPLVTGLVKTFQ 435 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 P++ R++ R E +L + L +++ G T+ + Sbjct: 436 DNGYYPVNNYT----RMIARMQEILVVVPELTKW---LTQDIQAGGKVAVHTD----LSM 484 Query: 496 PTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 G+G EAPRGALGHW A D + LYQ VVP+TWN +PR+ + E AL+ Sbjct: 485 AKSSTGMGLWEAPRGALGHWVATGPDSMVTLYQAVVPSTWNLAPRNSQEIPSPVEQALIG 544 Query: 555 TKMAIPE--------QPLEILRTLHSFDPCLACSTHVLGDDG 588 TK++ E PL IL T S+DPCLAC+ H + G Sbjct: 545 TKISAAENALGVDYSNPLGILHTARSYDPCLACAVHTIDKTG 586 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 187 bits (475), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 168/616 (27%), Positives = 265/616 (43%), Gaps = 122/616 (19%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 GR L + P+ R+EG + V I D V+T+A + +MFRG EIIL+G+DP+ RI Sbjct: 13 GRDLRISPLGRVEGDLDLRVTIRD-GVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPRI 71 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C G H +VYA++ A ++P NA +IRNI A FY L +D + Sbjct: 72 CGICGGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDLTN-- 129 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 +K + L + + + R FV Sbjct: 130 -------KKYAHLPE------------YDEAVRRFAPFVG-------------------- 150 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINI-DESGAVGAVN 253 Y + + V+I+A+FGG+ PH ++++ GG+ CA + D + A+ + Sbjct: 151 --------TSYEHGVTLSNKPVEIYAIFGGQWPHSSFMIPGGVMCAPTLADVTRAIAILE 202 Query: 254 MERLNLVQS--IITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYG------ 305 + ++ + ++ N D + N+ G + ++ G Sbjct: 203 YWKDEWLEKKWLGCSVDRWLQNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYGA 262 Query: 306 -----------------AFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEF 348 A P I +L+ G +NG F + D QV+E Sbjct: 263 GWNNYLATGTYFHPELYARPTIEGR--NAALIARSGVYVNGQFYDF------DQAQVRED 314 Query: 349 VDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR---- 404 V H++Y + V HPF+G T+P + + Q +Y+W KAPR+ Sbjct: 315 VSHSFYE--GNHV-LHPFEGRTEP-----------IDPEVGRRQGKYTWAKAPRYLIPGV 360 Query: 405 -GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAA 463 + +E GPLAR +IA G AA + D + L+ + S L R++ R HEA Sbjct: 361 GSHPLEAGPLARQVIAGRPG-AADWQDYDPLF--LDAVTTVGPSVLVRVMARMHEAPKYY 417 Query: 464 GKLQYFFDKLMTNLKNGNLATASTEKW--EPATWPTECRGVGFTEAPRGALGHWAAIRDG 521 ++ + D++ NL EK+ +P P E RG G TEA RG+L W ++DG Sbjct: 418 KLVRKWLDQI--NLH---------EKFYIKPKELP-EGRGFGSTEAARGSLSDWIVLKDG 465 Query: 522 KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 KI+ YQ + PT WN PRD + G E A + +A P P+E+ S+D CL C+ Sbjct: 466 KIENYQVITPTAWNIGPRDSREVNGPMEQAFLGAPIADPNDPVELGHVARSYDSCLVCTV 525 Query: 582 HVLGDD-GSELISVQV 596 H + G EL ++ Sbjct: 526 HAYDEKTGKELARFRI 541 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 177/650 (27%), Positives = 273/650 (42%), Gaps = 166/650 (25%) Query: 18 RLVVDPITRIEGHMRCEVNINDQN-------VITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+ VDPITRIEGH+ + + N V+ A S +FRG EIIL+GRDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC H A++ A++ A + A +IRNI+ A + +DHL+H Y L G Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTYLLVG-- 120 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 E+ P P G+ GI + G Sbjct: 121 ---------------PEIGVVCKYPPMVPPAL--------------GKEGIRKLG----- 146 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250 +G + Y++ +D QR+ +I A++GGK PH + P + + +G Sbjct: 147 ----------LG-SSYVQCVDIQRKANEIVALWGGKFPHH---MCEYPGGVTVKPTG--- 189 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE-------------IGTGLS 297 +R+ + T ++ +V + D +AI + N+ SE G S Sbjct: 190 ----DRIAQTLAKATELWEWCAHVALKDLIAIKERNEIVSERLSELLGIEHRAFADIGAS 245 Query: 298 DKCVLSYGAFPDIAN--DFGE---------KSLLMPGGAVINGDFNNVLPVDLVDPQQVQ 346 LSYG FPD N D+ + KS ++ G+ NG+ + ++ Sbjct: 246 WGNYLSYGIFPDPENYDDWVKAQDGQPSFRKSAVIYAGSWQNGELKPF------ERDKIV 299 Query: 347 EFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN 406 E+V ++ RY ++ G P+D V+ ++ +I ++ Y+W+KAPR+ G Sbjct: 300 EYVKYS--RYKDEISGMKPWD-----------VEMTN-DIVWKDKPNAYAWMKAPRYDGK 345 Query: 407 AMEVGPLARTLIAYH---KGDAA---TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQ 460 EVGPLAR ++ Y K D T E+V +N S + R+ R +A Sbjct: 346 VHEVGPLARMIVTYGLRWKFDVTNPITGETVSVDWEVMNPK----GSVIDRVASRVVQAL 401 Query: 461 WAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD 520 A K+ + +L + + ++ P E G G EAPRGAL H+ I++ Sbjct: 402 LFATKIMEWAVQLKDYASEYPIVSKDIPDYKYV--PNEGEGWGLWEAPRGALLHYTKIKN 459 Query: 521 GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL----MNTKMAIPE--------------- 561 I Y CVVP+TWN PRD G G E AL + +++P+ Sbjct: 460 KVIANYACVVPSTWNLGPRDDFGNPGPVEKALEGCWLPKNLSVPDVCNALWPEEDVLGMK 519 Query: 562 ---------QPLEI------------------LRTLHSFDPCLACSTHVL 584 PL + L + SFDPC+AC H + Sbjct: 520 WGDALAKAIAPLGLAELNLEPSNGAKYNTSLALAIVRSFDPCIACGVHTI 569 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 181 bits (459), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 156/577 (27%), Positives = 249/577 (43%), Gaps = 90/577 (15%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+++ P+ R+EG + + I D ++ +A S GTMFRG E +L GR D RIC Sbjct: 4 RKILDVPVNRVEGDLELRLEIAD-GMVVDAWSAGTMFRGFERLLIGRGALDGLVVTPRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H + + A++ G KVPDN +RN+ L + + +D+ + Sbjct: 63 GICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFAN--P 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP- 195 A +A P +++ + + + K VE + G W H + +P Sbjct: 121 AYRAQPLYD----EAVRRYAPLAGEAVAEAVRETKHVVE---IIAIIGGQWPHSSFMVPG 173 Query: 196 ------PEANLMGFAHYLEALD--FQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 P A L+ H L+ ++R I+ ++D Sbjct: 174 GLSYAPPVAELLQCRHVLDGFRGWYERRIL----------------------GCSLDRWR 211 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 AV ++ L L +S R +D ++ IG +G G + LS G+ Sbjct: 212 AVDSLEALDLWLEESAAHRDSDV--GFLLRFGRTIG-----LDRLGGGHGN--FLSCGSL 262 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 D+ + + + GG ++ F V+ DP + E V +WY + GRHP + Sbjct: 263 -DLPAETAARGV---GGHLVPSGFARGAVVEGFDPAAIAEHVAASWY--AAYEGGRHPAE 316 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G T+P Y G+ E RYSW+KA R+ G E GP A ++A GD Sbjct: 317 GETEP-YASGE------------EGRRYSWVKAARYLGTPAETGPFAERIVA---GDPLF 360 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + + R + L R L R + + +++ + + A Sbjct: 361 TDLLRRQGP----------NALARELARLTRPATLLPAMALWLGEVIASGGHDIYA---- 406 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 +P P + G+G +A RGALGHW AI+DG+I+ YQ + PT WN SPRD G G Sbjct: 407 ---DPGPIP-DGAGIGMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSGGVRGP 462 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 +E AL+ T +A + P+E+ + SFDPCL CS H + Sbjct: 463 WEEALIGTPVADADNPVEVGHVIRSFDPCLVCSVHTV 499 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 179 bits (453), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 159/587 (27%), Positives = 245/587 (41%), Gaps = 121/587 (20%) Query: 23 PITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGV 82 P+ R+EG + + I D IT A S GTM+RG E ++ GR D RICG+C+ Sbjct: 13 PLNRVEGDLEIQAAIED-GCITEARSSGTMYRGFENMMTGRGTLDGLVITPRICGICSLS 71 Query: 83 HALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADP 142 H A+V A+ED G PDNA +RN+ L +++ L++D Sbjct: 72 HLTAAVEALEDISGTTPPDNARRLRNLAL----------------------MVEMLQSDI 109 Query: 143 RKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE--ANL 200 R++ + + D N Y HP L E A L Sbjct: 110 RQSILM-------------FMVDFTNE--------------GAYASHPLSSLLMERYAPL 142 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGG-----------MPCAINID----- 244 G + ++++ R ++++ A+ GG+ PH +++V G + C + I+ Sbjct: 143 SGTS-AIQSIQETRRLLEVVAIIGGQWPHTSFMVPGGVTSSLGTPELLRCCMIIENFQSW 201 Query: 245 -ESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG---TGLSDKC 300 E +G ++ R + V S D++ + +G F + + G G Sbjct: 202 YEKNVLGC-SISRWHQVDSA-QAMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQGPDG 259 Query: 301 VLSYGAFP--DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN 358 L YG P + G++ +P G +G + DP + E + Y + Sbjct: 260 FLCYGGLPLPEHTEVKGQQGQFIPAGFARHGS------IQAFDPANIAEDISQCPYSQKH 313 Query: 359 DQVGRHPFDGITDP-WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTL 417 V HP+D T+P Y P + YSWIKAPR+ G+A+E GPLA L Sbjct: 314 TSV--HPWDSSTNPDPYAP--------------RENSYSWIKAPRYNGHAVETGPLAEML 357 Query: 418 IAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 + + D + + R S S L R L R + + +L +N Sbjct: 358 V---RRDPLFTDLIQRQGS----------SVLSRQLARLTRPARLIPAMLAWLRELSSNP 404 Query: 478 KNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNAS 537 + + + + +G G +A RG LGHW I D KI+ YQ + P+TWN S Sbjct: 405 QG--------KFYHRVKKIPDGQGAGLIQAVRGGLGHWVQIVDQKIEHYQIITPSTWNGS 456 Query: 538 PRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 PRD GA+E AL T + PE P+E + SFDPCL C+ H L Sbjct: 457 PRDGDNNPGAWEKALEGTFIKNPENPVEAGHVVRSFDPCLVCAVHSL 503 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 174 bits (441), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 160/619 (25%), Positives = 265/619 (42%), Gaps = 152/619 (24%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V+ P+ R+EG + +V + V+ A +FRG+EIIL+G+ P D+ RICG+C Sbjct: 5 VISPLNRVEGDLDLKVVFEGKKVV-KAFPMSRLFRGIEIILKGKFPMDSLVITPRICGIC 63 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 G H L++ A+E A G VP NA +RN+M + + H Y + +D +++ Sbjct: 64 GGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNL----- 118 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 K ++ G++ D+ R ++ GQ Sbjct: 119 ----KYEKM------------GFYRDIVLRWAPYL--GQ--------------------- 139 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 Y +A+ + + +I+A+FGG+ PH + +V P + D ++ + + Sbjct: 140 -----SYKQAVAWSKRYTEIYAIFGGQWPHGSAMV---PGGVTTD------PLSNDIIKA 185 Query: 260 VQSIITRTADFINNVMIPDALA----------IGQFNK-----------------PWSEI 292 + + TA+F+ V++ L + Q+ K W +I Sbjct: 186 KSILASITAEFLEKVILGGPLDQFLQVKSKRDLDQWAKDYPNGDISKIWNYGLEMKWDKI 245 Query: 293 GTGLSDKCVLSYG--AFPDIANDFGEKSLLMPGGAVINGDFNNVL------PVDLVDPQQ 344 G+G + ++SYG P+ + P V F L + + + Sbjct: 246 GSG--SQYLMSYGHVTLPEHYD---------PASHVEKKRFREGLLDLRTREIHQIKEEN 294 Query: 345 VQEFVDHAWYRYPN-DQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRW 403 + EFV H++Y Y D+VG HP++G T P P + KG +Y++ KA R+ Sbjct: 295 IVEFVSHSFYSYEQGDKVGLHPYNGETTPL--PPESKG------------KYTFTKAFRY 340 Query: 404 RGN----AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI--LCRAH 457 + A EVG LA ++A GD + V R+ +++ + + RI L R H Sbjct: 341 KLGGKYVAPEVGALAMMVVA---GDPLMTDLVYRIGTSV------LAREIARIVRLARIH 391 Query: 458 EAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 E + Y +D++ L+ RG G EA RG+LGHW Sbjct: 392 EIMREELE-SYEYDEITYIKPEEKLS---------------GRGYGLVEASRGSLGHWLV 435 Query: 518 IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 I +GKI YQ V PT N P DP G AL T++ P P+E+ + S D C+ Sbjct: 436 IEEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIALQGTEVENPNNPIEVAHIVRSHDACM 495 Query: 578 ACSTHVLGDDGSELISVQV 596 C+ HVL D G E++S+++ Sbjct: 496 VCNVHVL-DGGKEILSMRL 513 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 164/584 (28%), Positives = 234/584 (40%), Gaps = 109/584 (18%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RL++ P R+EG + ++ + D V T A MFRG E+IL GRDP DA + RICG Sbjct: 3 RLILGPFNRVEGDLEVQLEVTDGRV-TEARVNAPMFRGFELILNGRDPMDALSIAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++A+ A+ DA G+ VP N N+MLA DHL HFY D+ + A Sbjct: 62 ICSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAVYA 121 Query: 138 ----LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + R+ + LA S S+ + R + F G LG G W H Sbjct: 122 ARPWFREAERRFAALAGSTSN---GGLRSRAALAARARWFELIGTLG----GKWPHTGAV 174 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LP GG AI E + A Sbjct: 175 LP---------------------------------------GGTSRAIETTERIRLLARV 195 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN- 312 E ++ + TA + V D+LA Q W G L + N Sbjct: 196 REMRAFLEQTLFGTA--LEEVATLDSLAALQ---RWRARAAGSDMALFLDLAEATQLTNL 250 Query: 313 --------DFGEKSLLMPGGAVINGDFNNVLPVDL-VDPQQVQEFVDHAWYRYPNDQVGR 363 +G + G A+ G ++ L L +DP Q+ E HAWY Sbjct: 251 GPGPGRYLSYGAYARFEGGHALARGVWDAALQQGLPLDPTQISEDARHAWYAESTSAQAL 310 Query: 364 HPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG 423 HP G+T P + ++ YSW KAPR +E G +AR L+ Sbjct: 311 HPMAGLTQP---------------EPDKPGAYSWNKAPRLGSQVVETGAIARQLVDGQP- 354 Query: 424 DAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLA 483 ++ A L G T R+L R E ++ ++ + L+ Sbjct: 355 ----------LIRAAVLAHGGTVYT--RVLARLLE----MARILPLMEQWLLALQPHAPF 398 Query: 484 TASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKG 543 A + P + +G+G TEA RGALGHW I +G+I YQ V PT+WN SPRD G Sbjct: 399 HAVQAQ------PEQAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAG 452 Query: 544 QIGAYEAALMNTKM-----AIPEQPLEILRTLHSFDPCLACSTH 582 GA EAAL+ ++ Q + + + SFDPC+ C+ H Sbjct: 453 TPGALEAALVGARLDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 171/618 (27%), Positives = 258/618 (41%), Gaps = 122/618 (19%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 T+N L V P+ R+EG + V + D V+T A + MFRG E+IL+G+DP+ Sbjct: 4 TVNTKRMDLHVSPLGRVEGDLDLRVTVED-GVVTQAWTEAGMFRGFEMILKGKDPQAGLI 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 RICG+C G H S +A++ A ++P NA ++RNI A Sbjct: 63 VTPRICGICGGSHLYKSAFALDVAWRTELPPNALLVRNIAQAC----------------- 105 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 E QS+ W + + D+ NR +G + R Sbjct: 106 ----------------ETLQSVPRWFYAL--FAIDLTNRRYAKAKGYDEAVRRF------ 141 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINI-DESGA 248 A L+G Y + + V+I+A+FGG+ PH ++++ GG+ C + D + + Sbjct: 142 -------APLVG-ESYERGVTLSAKPVEIYAIFGGQWPHSSFMIPGGVMCGPTLSDVTRS 193 Query: 249 VGAVNMERLNLVQS--IITRTADFINNVMIPDALA------------IGQFNKPWSEIGT 294 + + R N ++S + ++ D LA +G F + EIG Sbjct: 194 IAILEEFRHNWLESRFLGCSVDRWLEIKTWEDVLAWVDENESQHNSDLGFFLRFGLEIGL 253 Query: 295 ---GLSDKCVLSYGAF--------PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQ 343 G L+ G + P I G + L+ + G + D Sbjct: 254 DRFGAGCGNYLAMGTYLHHEKYNRPTIE---GRNAALIQRSGIYAGGKHYEF-----DQA 305 Query: 344 QVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRW 403 +V+E DH + Y + HPF+G T+P +P D K Q +Y+W KAPR+ Sbjct: 306 RVRE--DHTFSFYQGSGL-LHPFEGRTEP-IDPADAK----------RQGKYTWAKAPRY 351 Query: 404 RGNAM-----EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHE 458 + + EVGPLAR ++A G+ + VD + S ++ S L R+L R HE Sbjct: 352 DVDGLGSVPLEVGPLARQVVAGKPGEEW--QDVDPLFS--DIIAKKGPSVLVRVLARLHE 407 Query: 459 AQWAAGKLQYFFDKLMTNLKN--GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWA 516 KL N++ G L +P RG G TEA RGAL W Sbjct: 408 EA-----------KLYKNVREWLGELDLHDRFYIKPVEHEF-GRGFGATEAARGALADWI 455 Query: 517 AIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + +GKI YQ V PT WN PRD + G E A + T + P P+E+ SFD C Sbjct: 456 VLENGKIANYQVVTPTAWNIGPRDSRNVNGPMEQAYLGTTIHDPGDPVELGHVARSFDSC 515 Query: 577 LACSTHVLGDDGSELISV 594 L C+ H + I V Sbjct: 516 LVCTVHAYDSKTGKEIGV 533 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 168 bits (425), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 135/238 (56%), Gaps = 21/238 (8%) Query: 365 PFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD 424 P++G T P Y+ ++ +YSW+K+P + G +EVGPLA L G Sbjct: 6 PWEGTTIPAYD------------GWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGR 53 Query: 425 AATVESVDRM------MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLK 478 +T ++ + ++ L ++ + STLGRI+ R LQ ++ L+ N+ Sbjct: 54 ESTQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNALIVNIG 113 Query: 479 NGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASP 538 G+ T + E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ P Sbjct: 114 KGDYTTFVKPNIQATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP 170 Query: 539 RDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 R+ +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 171 RNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 228 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 164 bits (416), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 166/576 (28%), Positives = 241/576 (41%), Gaps = 97/576 (16%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N RR++ P R+EG + ++IN V V+ +FRG E IL+G+DPRDA Sbjct: 1 MNEETRRIIAGPFNRVEGDLEIRLDINGSAVRAAYVNS-PLFRGFEQILEGKDPRDALTI 59 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 V RICG+C+ ++A+ +A+ A GI P N I I+ A DHL HF+ D+ Sbjct: 60 VPRICGICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADF 119 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 + A ++ SE ++ + VQ+ + + G W H Sbjct: 120 ARAIYAGESWYGMASEQFRAKNG---------SSVQDAMNARASLLHIMGLLAGKWPHTL 170 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 P A +A D QR+ V++ A+ +WI + A ++ A+ Sbjct: 171 SVQPGGAT--------KAPD-QRDRVRLLAII---RQFKDWIEKSI-FAAPVERILAID- 216 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 ++E L + + + I D L +G GL K +SYGA+P Sbjct: 217 -SLESLRAYHAEAPQHGSLRLFLTICDTLELGSM---------GLGPKRFMSYGAYPM-- 264 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 + L+P G +NG ++PVD + E + AW N + HPF+G T Sbjct: 265 ----DGRHLLPPGIWLNG---KIMPVDT---GLIAEDLTSAWM---NGETA-HPFEGRTL 310 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 P D + YSW KAPR G +EVG AR LIA H Sbjct: 311 P----------DETMAN-----GYSWCKAPRMAGQTVEVGAFARMLIADHP--------- 346 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 A L G + R++ R F+ T L A A E Sbjct: 347 ----LAQGLLQDGAANVRARVVGR-------------LFEIASTVLAMEQWA-ADIVPGE 388 Query: 492 PAT----WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 PA P + G TEA RG+LGHW + G+I YQ + PTTWN SPRD G G Sbjct: 389 PAMVHGRIPQSAKVEGLTEAARGSLGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGP 448 Query: 548 YEAALMNTKMAIPEQ-PLEILRTLHSFDPCLACSTH 582 E AL + E+ P+ + + SFDPC+ C+ H Sbjct: 449 VEQALRGAPVRHGEETPVSVQHIVRSFDPCMVCTVH 484 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 164/628 (26%), Positives = 252/628 (40%), Gaps = 123/628 (19%) Query: 22 DPITRIEGHMRCEVNINDQNV-ITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 DPITRI G + I+ +N + S ++FRG I ++G+DPRD+ RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 HA SVYA A G+K P A+ I N+ A + DH + L G+D+ + + ++ Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCEQM--VRE 143 Query: 141 DPRKTSELAQSLSSWPKSSPGY--FFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 E A++ + + GY D+ L F G F Sbjct: 144 TNPGVWEKAKTAEAPHAAEHGYRTIADIMTALNPFT-----GEF---------------- 182 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 Y E L R ++ + G++ HP+ + G VG V + Sbjct: 183 -------YRETLLVSRYTREMFCLMEGRHVHPSTLY-----------PGGVGTV--PTIQ 222 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEI----GTGLSDKCVLSYGAFPD----- 309 L ITR ++ + L F+ + + G + +G+F D Sbjct: 223 LFTDYITRLMKYVEFMKKVVPLHDDLFDFFYEALPGYEEVGRRRILLGCWGSFQDPNVCD 282 Query: 310 ----IANDFGEKSLLMPGGAVINGDFNNVLPVDLVD---------PQQVQEFVDHAWYRY 356 +G + PG V++G+ +L DLVD + DH Sbjct: 283 YNYRTMTKWGRGMFVTPG-VVVDGE---LLTTDLVDINLNIRILLGSSFYQDWDHEETSV 338 Query: 357 PNDQVG-----RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRW----RGNA 407 ND +G +HP++ T P Q+ N Y+W+ +PRW G+ Sbjct: 339 KNDPLGNAVDRKHPWNQTTLP------------RPQKRNFGGNYTWVMSPRWLDKRTGDH 386 Query: 408 MEV----GPLARTLIAYHKG--DAATVESVDRMMSALNLPLSGIQ-------------ST 448 + + GP+AR G D ++S + + LP + ++ + Sbjct: 387 LALDTGGGPIARLWATALAGLVDIGYIKSTGHSVK-IYLPRTALKPEAEFEWKIPMWSNA 445 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 + R R + ++A YF ++ + L G T + K P E G GF EA Sbjct: 446 IERDRARTYFQAYSAAAALYFAEQALAELHAGRTRTFTDFKV-----PDEAIGCGFHEAV 500 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQP----- 563 RG L H IRDGKI Y PT WNASPRD G G YE A+ NT + P Sbjct: 501 RGVLSHHLVIRDGKIANYHPYPPTPWNASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKG 560 Query: 564 LEILRTLHSFDPCLACSTHVLGDDGSEL 591 ++I+R + SFDPCL C H+ +G + Sbjct: 561 IDIMRAVRSFDPCLPCGVHMYVGNGKTI 588 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 158/625 (25%), Positives = 256/625 (40%), Gaps = 129/625 (20%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + + D +V+ +A GT +RG E ++ GRDP DA F +R+CG+C+ HA A+ A+E Sbjct: 1 MEMKDGSVV-DARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESL 59 Query: 95 IGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI-DVLDALKADPRKTSELAQS 151 G ++P +A ++RNI+ W H+ + Y + ++ D+ D + D + S++ + Sbjct: 60 AGATGQIPKDALLVRNILNGLAWLRSHVENLY----LSFLPDLADPIYGDLLRYSDVGTA 115 Query: 152 LSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALD 211 L+ G G F + + P A Y +A+ Sbjct: 116 LT----------------------GELAGRFNVPGYASTGHTAPGSA-------YTDAIR 146 Query: 212 FQREIVKIHAVFGGKNPHPNWIVGG----MPCAINIDE-SGAVGAV--NMER-------- 256 F + + A+ GG++PH IV G P A ++ + G ++ +ER Sbjct: 147 FVKLTGEAEAILGGRSPHSPVIVPGGVTVRPSASDLMKLKGCYASIVDFLERRLTYPLSL 206 Query: 257 -----------------LNLVQSIITRTAD-------------FINNVMIPDALAIGQFN 286 LN ++S+ T F + +M D L++ + Sbjct: 207 DEWLENTHSTQANPDFILNRIKSLPTGDLSMEKGWNDMQLFSVFCSRMMSYDFLSMPIYV 266 Query: 287 KPWSEIGTGLSDKCV--LSYGAFPDIANDFG------------EKSLLMPGGAVINGDFN 332 + + G L D+ + L+YG F + + G E + +P G N Sbjct: 267 ELDTLGGYPLYDQLIGFLNYGGFYRVRDRAGNFTDGYSPVDGEEGTFEIPSGFTPGSMPN 326 Query: 333 NVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ 392 DP V E V +++ Y + P G T P D+ S Sbjct: 327 LFDSPGKADPAMVAEQVSGSFFSYSGGETALKPEAGETSPSPRAADIDYSG--------- 377 Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS----- 447 +YS++KAPR+ E GPLAR + + ++ +MM N S +S Sbjct: 378 HKYSFVKAPRYGNVPCETGPLARMI----NSREPYIMNIMQMMHFSNPVFSSGKSYNRTS 433 Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 R+L R E A L + D L + + + P T G EA Sbjct: 434 VYTRVLSRMQECLITAQLLGRWIDDL-------EVHSDPRKYCVPVTPGRGEAGACMIEA 486 Query: 508 PRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA----IPEQ 562 PRGALGHW + DG+I YQ + PTTWNASPRD + + G E +L+ K IP Sbjct: 487 PRGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAETKFGPIELSLIGAKTTPRGNIPGS 546 Query: 563 ---PLEILRTLHSFDPCLACSTHVL 584 P+ + + SFDPC++C+ H + Sbjct: 547 EVNPISLYHIIRSFDPCVSCAVHTI 571 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 166/589 (28%), Positives = 228/589 (38%), Gaps = 133/589 (22%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 RR+ V P R+EG + ++++D V+ +A ++RG E IL+GR DA V RIC Sbjct: 3 RRITVGPFNRVEGDLEVRLDLDD-GVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ ++A+V A+ A G++ N + N+ A DHL HFY D+ D Sbjct: 62 GICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDF--ARD 119 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A P W F VQ Q LP Sbjct: 120 AYAGRP------------WHPEIAARFKAVQG-------------------SAAQAMLPA 148 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNME 255 A L+ +I + GK PH + GG CAI++ E Sbjct: 149 RARLL----------------QIMGLLAGKWPHSLAFQPGGTTCAIDLGE---------- 182 Query: 256 RLNLVQSIITRTADFINNVMIPDA----LAIGQFN--KPWSEIGTGLSDKCVLSYGAFPD 309 R+ L+ SII DF+ M D+ LAI + W + G + F Sbjct: 183 RVQLL-SIIGDFRDFLERTMFGDSLDNVLAIDSVAALEAWRDGRGG-------DFARFLA 234 Query: 310 IANDFGEKSL------LMPGGAVINGD----FNNVL-PVDLV----DPQQVQEFVDHAWY 354 +A+D L LM GA D VL P+ DP + E V AW Sbjct: 235 VADDLALHRLGRIALPLMSFGAYHGEDAPLFAAGVLDPLSAARTSFDPAAITEDVARAWM 294 Query: 355 RYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLA 414 R P + TDP ++ YSW KAPR G EVG LA Sbjct: 295 R----DTSLSPLEADTDP---------------DADKPAGYSWCKAPRLAGGPAEVGALA 335 Query: 415 RTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 R I GD + V R S + + R+ H QWA Sbjct: 336 RQAI---DGDPLIRDCVARFGSCVTTRVVARLRETARLALAMH--QWA------------ 378 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTW 534 + +LA E+ E T G+G EA RG+LGHW +R I YQ + PT+W Sbjct: 379 ---RQLDLAEPFLERGERGRDGT---GIGLVEAARGSLGHWIELRGDSIRRYQIIAPTSW 432 Query: 535 NASPRDPKGQIGAYEAALMNTKMA-IPEQPLEILRTLHSFDPCLACSTH 582 N SPRD G G E AL+ T + + + I + SFDPC+ C+ H Sbjct: 433 NFSPRDRGGVPGPLEQALVGTPVGDAGARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 144 bits (363), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 163/651 (25%), Positives = 258/651 (39%), Gaps = 131/651 (20%) Query: 19 LVVDPITRIEGHM--RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + +DPITRIEGH+ + EV++ + TN TMFRG E+ ++GR P DA A R+C Sbjct: 36 IFIDPITRIEGHLGLKAEVDVTSRKT-TNTWVFATMFRGFEVFMRGRPPEDAIAISSRVC 94 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNI-MLATLWCHDHLVHFYQLAGMDWIDVL 135 GVC HA A+ A + A+G ++RN+ + T +DH + L G D+ +V Sbjct: 95 GVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSEV- 153 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 S+L S K++P + V +GY + Sbjct: 154 --------AVSKLTPSCWEAAKTTPAEYSAV-----------------HGY--RTIADIM 186 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 + N + + + +QR + + G++ HP ++ P I+ D S A Sbjct: 187 KDMNPITGRIWQLTVKYQRIAREAGVLIYGRHSHPATLI---PGGISTDLSTAQYLFEGY 243 Query: 256 RLNLVQ---------SIITRTADFIN----------NVMIPDALAIGQFNKPWSEIGTGL 296 L Q ++ ADF N P + G F+ P E + L Sbjct: 244 AFRLTQLTAWTKFVVAVWMDLADFYNKNCNYEDEGYTYSKPILYSSGVFDDP--EAYSQL 301 Query: 297 SDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFN----NVLPVDLVDPQQVQEFVDHA 352 D Y ++A L GG ++ + NV V+LVD +E+ D Sbjct: 302 GDDYKTIYEKIDEVAKKRAAPPGLYIGGELVTENITEHQRNV--VELVDSSFYEEWKDKT 359 Query: 353 WYRYPNDQVGRHPFDG--ITDPWYNPGDVKGSDTNIQQLNEQE---RYSWIKAPR--WRG 405 D G +P G T WY+P + T I + + +YSW R W+G Sbjct: 360 TLFTKTDPAG-NPLVGGDETLVWYHPWN----KTTIPRPTDSSWSGKYSWAATVRLYWKG 414 Query: 406 N--AMEVGPLARTLIAYHKGDAATVE---------------SVDRMMSALNLPLSGIQ-- 446 EVGP+A+ + H VE ++ + +LP + Sbjct: 415 KLYPFEVGPIAKMYVMAHSNLKGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEEV 474 Query: 447 ----------STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 +T+ R+ RA + F + + + + + AS EPA Sbjct: 475 TFTYYAPPKSTTIERVRARAFDMAVDVADAWAFVLRGLYYINSKGMTQASRPWKEPAF-- 532 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY-------- 548 G G E PRG + HW +++G+I YQ PTT N PR PKG++ Y Sbjct: 533 --SLGFGQLEVPRGNVEHWIVVKNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVT 590 Query: 549 -----------EAALMNTKMAIPEQP-----LEILRTLHSFDPCLACSTHV 583 EAA ++T ++ +P L+ +R + SFDPC+AC+ H+ Sbjct: 591 KSPEGYCLSPFEAAALHTVVSEEVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 112/219 (51%), Gaps = 15/219 (6%) Query: 155 WPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR 214 W +S ++++RL+KFV+ G+LGIF NGYWG+ YKL P NL+ HY +AL+ QR Sbjct: 29 WTRSMHNTSTEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQR 88 Query: 215 EIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 ++ ++ +FGGK+PHP + +VGG+ I+I + + L + + R FI Sbjct: 89 DLGQMMTIFGGKDPHPQSLVVGGVTSIIDIKDPA--------KRQLFKGLALRVRAFIKG 140 Query: 274 VMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNN 333 +P + + K G G K L YG FP D L PGG V NGD Sbjct: 141 AYMPGMYMLSEMYKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDLTK 200 Query: 334 VLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 V DP V E V HAWY P + HP+DG T P Sbjct: 201 VTD---FDPALVTEDVTHAWYAAPAPE---HPYDGTTTP 233 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 138 bits (347), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 179/661 (27%), Positives = 260/661 (39%), Gaps = 121/661 (18%) Query: 18 RLVVDPITRIEGHM--RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+ +DPITRIEGH+ R V+ + A + TMFRG EI GR P D RI Sbjct: 9 RIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPEDLPHVTSRI 68 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA-TLWCHDHLVHFYQLAGMDWIDV 134 CGVC HA ASV A++ A G+ ++RN+ A T +DH + L G D+ Sbjct: 69 CGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGMLEGPDYSAA 128 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQ--NRLKKFVEGGQLGIFRNGYWGHPQY 192 + S+ S+ K D+ + +E L W QY Sbjct: 129 I---------VSKFTPSVYDHAKKVYAEHRDIHGFTTIADIMEA--LNPLTGKVW---QY 174 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGA 251 A+ FQR + + G++ HP+ ++ GG+ I+ D + A Sbjct: 175 ----------------AVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDIS-DAENLLLA 217 Query: 252 VNMERLNL---VQSIITRTAD----FINNVMIP-------DALAIGQFNKPWSEIGTGLS 297 + L V+ D F V +P + L+ ++P G + Sbjct: 218 YTTRLIKLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSYAYTSEPSECPGMKTT 277 Query: 298 DKCVLSYGAFPDIANDFGE-------------------KSLLMPGGAVINGDFNNVLPVD 338 V S G F D +GE K LL PG VI G+ ++ Sbjct: 278 VLAVTSSGIFDD-PEAYGEDMPQYDPVEFYKAIDKAAIKRLLKPG-IVIRGE---LVSTS 332 Query: 339 LVDPQQ-VQEFVDHA---------WYRYPNDQVGRHPFDGITDPWYNP-GDVKGSDTNIQ 387 L + Q+ + E V+ A WYR D G G D Y+P V + Sbjct: 333 LKEYQRSIMEHVERAFYEDWDKPRWYR-EQDPEGSPLLHGKYDAKYHPWNKVTIPKLEGK 391 Query: 388 QLNEQERYSWIKAPR--WRGNAM---EVGPLARTLIAYHKGDAATVESVDRMMSA----- 437 +N +Y+W R W+ ++ EVGP AR LI + V+ D A Sbjct: 392 AINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWFKAGGREI 451 Query: 438 -LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN----------------G 480 ++LP + G + C E +W + +L N Sbjct: 452 TVHLPRACTDELPGSV-CEPMEFKWKVPPISTTIYRLWARAFNLLLDVVGAWKGVSQYRS 510 Query: 481 NLATASTEKWEPATWP-TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPR 539 L TE P P T G GFTEAPRG + HW +GK+ Q PTT N SP Sbjct: 511 LLDKRYTETSRPWKVPRTITFGFGFTEAPRGTVRHWVVQENGKVLNVQIHAPTTGNVSPH 570 Query: 540 DPKGQIGAYEAALMN--TKMAIPE--QPLEILRTLHSFDPCLACSTHV-LGDDGSELISV 594 D G ++AL + T+ PE Q L+ +R++ SFDPCLAC+ H+ DG + +V Sbjct: 571 DRFGYSPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACAVHLAFRKDGKTVKTV 630 Query: 595 Q 595 + Sbjct: 631 E 631 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/289 (32%), Positives = 146/289 (50%), Gaps = 32/289 (11%) Query: 275 MIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV 334 MIPD I G G +++G F + + ++ MP G V Sbjct: 1 MIPDTKIIAPAYTDALHFGKGCGR--YVAWGVFERPSMEPTDR--YMPAGVVWEN----- 51 Query: 335 LPVDLVDPQQ--VQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTN-----IQ 387 +++ DP + ++E+V H+WY +D +P +G+TDP Y V GS+ I Sbjct: 52 --LNVTDPDEALIKEYVGHSWYVGDSDL---NPVEGVTDPEYTSYYVPGSEHEENGHMIG 106 Query: 388 QLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG---DAATVESVDRMMSALNLPLSG 444 +N+ RY+W K P + G ME GP +R L AY +G + V++++ + + L L + Sbjct: 107 TVND--RYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADLGLTIPD 164 Query: 445 IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGF 504 +QSTLGR+ R E + A + + D+L+ +K G+ ++ A RG G Sbjct: 165 LQSTLGRVAARQVECLYVAELMVEWVDELIAAIKEGD------SEYFRAPERLSGRGTGM 218 Query: 505 TEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 EAPRGAL H + +GKI+ YQ ++PTTWN +PR+ +G G E ALM Sbjct: 219 WEAPRGALLHTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 184/403 (45%), Gaps = 39/403 (9%) Query: 208 EALDFQREIVKIHAVFGGKNPH-PNWIVGGMPCAINIDESGAVGAVNME------RLNLV 260 EA+ Q+ + + GGK PH I GG+ I+ + + ++ ++ + L Sbjct: 142 EAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIISKLISIVLDVKKWALGVGLG 201 Query: 261 QSIITRTADFINNVM--IPDALAIGQFNKPWS-EIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++ + D V+ + L G P E+G GL D L D GE+ Sbjct: 202 KTALEHARDVAGYVIDDVSKKLEKGVVEPPNDPEVGKGLYDLVSLILVMANLGLKDMGER 261 Query: 318 S-LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + ++ G + + + P + +++++F YR + V +D Y Sbjct: 262 TPTMLAYGFLADPNGELFFPSGFFNGKELEKFD----YRNIGEDVKYSYYDDEAGGSY-- 315 Query: 377 GDVKGSDTN--IQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 V DT I + + Y+W KAPR++G EVGPLAR + ++ + +D Sbjct: 316 --VGEEDTRKLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKGYRDGWEVGDPLD-- 371 Query: 435 MSALNLPLSG---IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 L L+G + L R + R E L + + L+ LK+ A K+E Sbjct: 372 ---LRKNLAGGRTASNALARNIARIQEEL----VLIDYLENLLLELKDYAGKKAYV-KYE 423 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 + GVG EAPRGALGHW IR GKI+ YQ + PTTWN SPRD K Q+G E A Sbjct: 424 I----NDGDGVGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRDSKDQMGPLEEA 479 Query: 552 LMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 L+ T ++ +Q ++R +HSFD CLAC+ HV + S I + Sbjct: 480 LIGTPISESDQ-WNVIRVIHSFDLCLACTVHVYSEKSSWTIKI 521 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 54/123 (43%), Positives = 76/123 (61%), Gaps = 7/123 (5%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +V+DP+TRIEGH + + D V+ +A S TMFRG E I+ GRDP+DA ++RICGV Sbjct: 3 VVIDPVTRIEGHHGVRLKVED-GVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGV 61 Query: 79 CTGVHALASVYAIEDAI------GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C H LAS++AIE+A G +P+ A ++RN + A + DH V Y L G D+ Sbjct: 62 CHNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYC 121 Query: 133 DVL 135 D + Sbjct: 122 DAI 124 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/167 (40%), Positives = 97/167 (58%), Gaps = 7/167 (4%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R ++DPITRIEGH+R E+ + D V+T+A G FRG+E+++Q R P DA V+RICG Sbjct: 3 RSIIDPITRIEGHLRVEMEV-DNGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA S A E A IK+ +NA IIRNI+ + H H++ FY LAG D+++ L+A Sbjct: 62 VCPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 L A+ +L S + G D+ +K +G F++ Sbjct: 122 LNANIATAYDLVSS------AGTGCQTDLTALAQKLTSSPTMGSFQS 162 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 108 bits (270), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 134/564 (23%), Positives = 210/564 (37%), Gaps = 138/564 (24%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + E+ + + I +A RG+E +L+GR DA R+CG+C H Sbjct: 8 LARVEGTAQLEL-VWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCGICGHAH 66 Query: 84 ALASVYAIEDAIG-IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADP 142 +A V A+EDAIG +++ A ++R+I L +H+ FY D+I Sbjct: 67 LMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFI---------- 116 Query: 143 RKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMG 202 L + L + FR W Sbjct: 117 ----RLGEKLDEFEP------------------------FRGKRWK-------------- 134 Query: 203 FAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAI-NIDESGAVGAVNMERLNLV 260 EA+ E +K+ A+FGG+ PH ++ V GG+ + D S A+ V+ + Sbjct: 135 -----EAISVASEAIKVIAIFGGQWPHSSYAVPGGITSNFTSTDVSKALALVSRVEGFFL 189 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320 +S++ M +A + + W GL L F D+ +G + + Sbjct: 190 ESLVG---------MPVEAFLSLRKHGSWE----GLKGDVKL----FIDLCFKYGLERVG 232 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 M G ++ G V P P + G+ K Sbjct: 233 MSYGRLLTG--GEVFPC--------------------------------ITPGHFTGEKK 258 Query: 381 GSDTNIQQLNEQER--YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSAL 438 NI ++ E + YS K R+ G E GPLAR ++ V+ + +M Sbjct: 259 LCSLNISKIREADGSPYSGAKRVRYNGMPYETGPLARQFLS----GNPFVKRLHKMYG-- 312 Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 S + R+L R E ++ L + +K + +K E T Sbjct: 313 -------DSYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKEPS-CQIPFQKPERITG--- 361 Query: 499 CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 GVG EA RG L H +I G I Y + P+ WN PR K +G E A++ Sbjct: 362 -EGVGIVEAARGTLIHRVSIEKGVITRYHIITPSVWNLGPRCEK-YLGVAEKAMIGL--- 416 Query: 559 IPEQPLEILRTLHSFDPCLACSTH 582 E P+ L SFD C C+TH Sbjct: 417 --ENPIHAEMVLRSFDVCSVCTTH 438 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 171/433 (39%), Gaps = 120/433 (27%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+VV P R+EG + +++ DQ +T A +FRG E I+QG++P DA + RICG Sbjct: 3 RIVVGPFNRVEGDLEIKLD-TDQGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++AS A+ D + + +P N + N++LA D L HFY D+ + Sbjct: 62 ICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGI-- 119 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 S+ +F V++R K Q G Sbjct: 120 -------------------YSNEPWFDSVESRFK-----AQKG---------------SA 140 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN-MER 256 A +M L + E + + + GK PH ++++ G+ + ER Sbjct: 141 AKVM--------LPARSEFLHLMGIMAGKWPH----------SLSLQPGGSAKPIEAQER 182 Query: 257 LNLVQSIITRTADFINNVMIPDAL-AIGQFNKPWSEIGT----------------GLSDK 299 + L+ +I+ F+ + + D L AI + W+E+ LSD+ Sbjct: 183 IRLL-AILASFRKFLEHTLFGDDLEAIAELGS-WNELQNWREKHDWQHSDFTRFLHLSDQ 240 Query: 300 C-----------VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEF 348 LSYG +PD P G + + V D + + E Sbjct: 241 LHLASMGRATDQFLSYGNYPD------------PQGGLFKAGASFAGAVTDFDQKGITED 288 Query: 349 VDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAM 408 + ++W + N V HP G T+P L+ + YSW KAPR M Sbjct: 289 LAYSWMQSVNGPV--HPAAGNTEP---------------SLDNEAAYSWCKAPRLNRQVM 331 Query: 409 EVGPLARTLIAYH 421 EVG LAR LI H Sbjct: 332 EVGALARQLINGH 344 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 101 bits (252), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 84/191 (43%), Gaps = 42/191 (21%) Query: 364 HPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG 423 HP +G T PW L + YSW KAPR+ G E G LAR ++A Sbjct: 279 HPAEGETVPW---------------LERPDAYSWCKAPRYHGAPAETGALARAVVA---- 319 Query: 424 DAATVESVDRMMSALNLPLSG--IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 +PL+ +Q G + R W ++ + + +T + Sbjct: 320 ---------------GVPLARDLVQRWGGSLFSRVIARLWECARIVQWVEAWLTEID--- 361 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 EP WP E RGVG EA RGALGHW + +G+I YQ + PTTWN SPRD Sbjct: 362 ---VKAPFIEPVVWPNEGRGVGLVEAARGALGHWLEVANGRIQRYQIIAPTTWNFSPRDQ 418 Query: 542 KGQIGAYEAAL 552 GQ G E AL Sbjct: 419 TGQPGPLEKAL 429 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 48/90 (53%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + ++ +T A +FRG E ILQGR P DA V RICG+C+ ++A+ A+ D Sbjct: 4 LTLDAAGFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQALADW 63 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLVHFY 124 IK N ++ +LA DHL HF+ Sbjct: 64 ARIKPVPNGALVAQTVLAVENLADHLTHFF 93 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 94.4 bits (233), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/116 (36%), Positives = 68/116 (58%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ V P+TRIEGH + ++++D N T+A RG E LQGR +A V +IC Sbjct: 3 KQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 G+C H LA+ A+++ G++ P AN++R +M + H H +HFY L D++ Sbjct: 63 GICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFV 118 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 45/124 (36%), Positives = 69/124 (55%), Gaps = 2/124 (1%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TR+EGH + ++ +D + RG E L+GR DA F RICG Sbjct: 3 KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI--DVL 135 +C H LAS A+++ G+K+P+ AN++RN++ H H +HF LA D + Sbjct: 63 ICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLMFPTTD 122 Query: 136 DALK 139 DALK Sbjct: 123 DALK 126 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 9/100 (9%) Query: 501 GVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAA---LMNTK 556 GVG EAPRG L H D G I+ VV T N +P IG + A + + Sbjct: 370 GVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQN----NPAMDIGVQKVAEKYIKTPE 425 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +A P + + ++DPCL+C+TH +G++ +++S+ V Sbjct: 426 VAKPHILNHMEMVIRAYDPCLSCATHTIGEE-PKILSIHV 464 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 85.5 bits (210), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCG-TMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+ P +R EGH + ++D+ ++T T RGLE I+ G+ P A V+RIC Sbjct: 4 RIVISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 GVC H LASV AI+D++ I+VP ++R + LA + H +H + +A Sbjct: 64 GVCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIHHFLIA 114 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 78/192 (40%), Gaps = 28/192 (14%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 +R++ + W + E+ A + I + G V RM+ G+ + + Sbjct: 225 DRFTEVMPESWYDDP-EIAKRACSTIPLYDGRNVEVGPRARMVEFQGFKERGV---VAQH 280 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + RA E + A + D+L T+ A + E T GVG E PRG Sbjct: 281 VARALEMKTALARAIEILDELDTS------APVRADFDERGTGKL---GVGAIEGPRGLD 331 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS 572 H A + +GKI Y +VPTTWN P + +E + + Sbjct: 332 VHMAQVENGKIQFYSALVPTTWNIPTMGPATEGFHHEYG---------------PHVIRA 376 Query: 573 FDPCLACSTHVL 584 +DPCL+C+THV+ Sbjct: 377 YDPCLSCATHVM 388 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 2/135 (1%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ + PITRIEGH V ++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C VH LA+ A+++ G +P+ A +R +++A H +H + L+ D++ L+ Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYL--LE 119 Query: 137 ALKADPRKTSELAQS 151 R + LA++ Sbjct: 120 GATPATRNVAGLAKA 134 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 34/220 (15%) Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNA--MEVGPLARTLIAYHKGDAATVESVDRM 434 G+ + D + E YS++K + + + VGPLAR +A D+ D+M Sbjct: 249 GEFQAKDYSSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVA----DSMGYPEADKM 304 Query: 435 MSALNL-----PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT--NLKNGNLATAST 487 ++ P L RI+ A ++ A LQ D+ +T N++N Sbjct: 305 LAEFRAKYGRAPQQPALYNLARIIEVAAASERALALLQ---DRAITDKNVRN-------- 353 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIG 546 P RGVG EA RG L H + D G I +V T N D G Sbjct: 354 ----PVAGIKNTRGVGIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAIDR----G 405 Query: 547 AYEAALMNTKMAIPEQPLEILRTL-HSFDPCLACSTHVLG 585 +E A E L + L ++DPC++C+TH +G Sbjct: 406 VFETAKKYIHGDADEATLNKIEMLVRAYDPCVSCATHAIG 445 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 84.3 bits (207), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 65/115 (56%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V++P++R+EGH + + +++ + T RG E + GR + V RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H LASV AI+ A G+++P+ A +R +M H H +HFY LA D++ Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFV 117 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 132/582 (22%), Positives = 206/582 (35%), Gaps = 136/582 (23%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DP+TRIEGH + + ++D+ + +A T FRG E GR + RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS + + + +P+ A +R +M H + F+ L+ D+L Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAP---DLLL 118 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + ++P K + G +G+ P Sbjct: 119 GMDSEPAKRNVF----------------------------GLIGV-------------DP 137 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E G + F +EI+++ GGK HP W V G G + E Sbjct: 138 ELARGG----IRLRQFGQEIIEL---LGGKKIHPAWAVPG----------GVSDPLTTEN 180 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + +Q+ I + N AI F K K ++G FP + Sbjct: 181 RSHIQNRIPEAKSTVLN-------AIALFKKLLENY-----QKEAQTFGNFPSLF----- 223 Query: 317 KSLLMPGG--AVINGDFNNV-----LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 L+ P G +G V + D ++ EF+ A V + + Sbjct: 224 MGLVTPQGLWETYDGHLRFVDSGGNIVADKLEADNYHEFIGEA--------VQEDSY--L 273 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 P+Y P S + R VGPLAR I G Sbjct: 274 KSPYYRPLGYPDSKDHC---------------RLDSGMYRVGPLARLNICSQIGTPLA-- 316 Query: 430 SVDRMMSALNLPLSG-IQSTLGRILCRAHEAQWAAGKLQYFFDK---LMTNLKNGNLATA 485 D+ + SG ++S+ R E + ++ D L T L+ A A Sbjct: 317 --DQELREFRTYGSGTVKSSFFYHYARLIEILASVEHIEILLDDPDILSTRLR----AAA 370 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQ 544 + E VG +EAPRG L H I +G I ++ T N + + Sbjct: 371 GINRLE---------AVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNNLAMN---R 418 Query: 545 IGAYEAALMNTKMAIPEQPLEILRT-LHSFDPCLACSTHVLG 585 A A I E L + + +FDPCL+CSTH G Sbjct: 419 TVAQIARHFIQGSQIQEGMLNRVEAGIRAFDPCLSCSTHAFG 460 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ +DP+TR+EGH + ++ +ND + ++ RG E QGR + +IC Sbjct: 3 KKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPKIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 GVC G H +AS A + G+ P A IR + H H++HF+ LA D++ Sbjct: 63 GVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFM 118 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 81.3 bits (199), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 64/118 (54%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 RR+ ++ IT+IEGH + I D+N+ R E + G+ + RIC Sbjct: 4 RRIRIEEITKIEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 G+CT H +ASV A+EDA+GI++ + +R +ML + H++H Y LA D+ +V Sbjct: 64 GICTVAHEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNV 121 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 8/85 (9%) Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMNTKMA 558 GVG EAPRG L H I++GK + PT N R KG I + Sbjct: 339 GVGVIEAPRGLLIHHYKIKNGKCTYVNIITPTAMNTENIERILKGYIS---QIVSKNDEY 395 Query: 559 IPEQPLEILRTLHSFDPCLACSTHV 583 I + +I+R ++DPC++CS HV Sbjct: 396 IKMEAEKIIR---AYDPCISCSVHV 417 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 50/142 (35%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TRIEGH + V+++D + + FRG E LQGR +A V RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPD---NANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 +C H LA+ A++ G + D A +R IM + H H +HFY LA D+I Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 135 LDALKADPRKTSELAQSLSSWP 156 D RKT + Q + P Sbjct: 123 KD------RKTRNVFQIIKDAP 138 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 88/215 (40%), Gaps = 35/215 (16%) Query: 395 YSWIKAPRWRG-----NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 YSW+K P + V PL+R +A DAA Q TL Sbjct: 269 YSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKMPDAAP--KAQEHFKEFRENFGYAQQTL 326 Query: 450 ----GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFT 505 R++ A+ AA L+ G+L S EK+ + GVG Sbjct: 327 LYHWARLIELLACAECAADALE------------GDL---SGEKFPDSLERQAGDGVGIV 371 Query: 506 EAPRGALGH-WAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA--LMNTKMAIPEQ 562 EAPRG L H + +G I VV T N +P ++G + A + + + ++ Sbjct: 372 EAPRGTLTHHYTCDENGLITKANIVVATIQN----NPAMEMGIQKVAQDYIKPGVEVDDK 427 Query: 563 PLEILR-TLHSFDPCLACSTHVLGDDGSELISVQV 596 ++ + ++DPCL+C+TH + D L +++V Sbjct: 428 IFNLMEMVIRAYDPCLSCATHTI-DSQMRLATLEV 461 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 73/135 (54%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ V+DP+TR+EGH + ++++D+ + +A T FRG E ++GR + RIC Sbjct: 3 KKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITARIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LA+ A +D + VP++A+ +R +M H + F+ L+ D + D Sbjct: 63 GICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGYD 122 Query: 137 ALKADPRKTSELAQS 151 A AD LA++ Sbjct: 123 ADPADRNIEGVLAEN 137 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 100/231 (43%), Gaps = 37/231 (16%) Query: 377 GDVKGSDTNIQQLNE-------------QERYSWIKAPRWRGNAMEVGPLARTLIAYHKG 423 GD++ D + QL E + +S++K P ++ E G Y G Sbjct: 239 GDIRLVDESGDQLEEIDDGAYRDIIAERSKEWSYLKFPYYKDRGFEDG-------QYRVG 291 Query: 424 DAATVESVD--RMMSALNLPLSGIQSTLGRILCRAHEAQWAAG-KLQYFFDKLMTNLKNG 480 A + +VD R A + + + G + R+ WA ++ Y +++ L++ Sbjct: 292 PLARLNAVDDVRTPQAHEEWVEFMDAAEGAVHERSTYYHWARLIEMLYCVERIQELLEDD 351 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQCVVPTTWNASPR 539 ++ T T P GVG EAPRG L H I DG K++ +V TT N Sbjct: 352 DVYDGITNI---PTKPKAGTGVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAM 408 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS----FDPCLACSTHVLGD 586 + KG A E T + PE P IL + S +DPCL+CSTH +G+ Sbjct: 409 N-KGVTSAAE-----TFIDGPEIPEGILNKMESVIRCYDPCLSCSTHAIGE 453 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 79.0 bits (193), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 6/137 (4%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS Q ET R + +DP+TRIEGH + VN+ + + NA RG E IL Sbjct: 1 MSAQTETPN------SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKIL 54 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 G + RICGVC H +A+ A++ A G+ P A ++R +M H H Sbjct: 55 VGMEANRMPHITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHA 114 Query: 121 VHFYQLAGMDWIDVLDA 137 + + L G D + LDA Sbjct: 115 LSLFVLQGPDLVLGLDA 131 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 78.2 bits (191), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 63/114 (55%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +D + R+EGH V +N++ + + +S R E++L+G+ RDA V R+C + Sbjct: 4 ITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVCSI 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C+ H LASV A+E A+GI V D R ++ + H +H + LA D++ Sbjct: 64 CSAGHTLASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYL 117 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 61/116 (52%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +R+++DP+TRIEGH + + ++D +T+A T FRG E +GR + RIC Sbjct: 3 QRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 G+C H LAS A + + + +P A +R +M H + F+ L+ D + Sbjct: 63 GICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLL 118 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 85/197 (43%), Gaps = 44/197 (22%) Query: 395 YSWIKAPRWRGNAMEVGPLARTLIAYHK---------GDAATVESVDRMMSALNLPLSGI 445 Y+W KA R+ G E GPLAR L++ ++ G + V V RM A+ L + Sbjct: 287 YTWSKAARYSGLPCETGPLARQLVSGNRVIGSLFRRFGSSVLVRVVARMDEAVRL-FTEA 345 Query: 446 QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFT 505 Q TL RI + E W + +K+ + RGVG Sbjct: 346 QRTLHRI--KLDEPSWNRPSVD---EKVFSG-----------------------RGVGVV 377 Query: 506 EAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLE 565 EA RG L H I G+I Y + PT WN PRD + +G E AL+ E E Sbjct: 378 EAARGTLIHELEIEGGRIRSYNIITPTVWNLGPRDAE-HLGVAERALLGLD---SELKAE 433 Query: 566 ILRTLHSFDPCLACSTH 582 I+ + SFD C C+TH Sbjct: 434 IV--VRSFDVCSVCTTH 448 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 79/197 (40%), Gaps = 43/197 (21%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + ++ + + +A C +RG E +L+G+ DA V R+CG+C H Sbjct: 8 LNRVEGEIELKL-LWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCGICGHAH 66 Query: 84 ALASVYAIEDAIG-----IKVPDNANIIRNIMLATLWCHDHLVHFYQ------------- 125 +A V AIEDA +++ D A IR + L +HL FY Sbjct: 67 LMACVKAIEDAYSSEGYPVQLSDKALEIRKLTLMCEMLQNHLRWFYMYLLPDIVKLEPSI 126 Query: 126 ------LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSS-----------PGYFFD--- 165 L G W+ +AL+A +A WP +S GY Sbjct: 127 AELYEPLRGRAWV---EALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAE 183 Query: 166 -VQNRLKKFVEGGQLGI 181 RLK F E LG+ Sbjct: 184 LFLERLKTFFESWLLGM 200 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 97/383 (25%), Positives = 148/383 (38%), Gaps = 76/383 (19%) Query: 208 EALDFQREIVKIHAVFGGKNPHPNWIVGG--MPCAINIDESGAVGAVNMERLNLVQSIIT 265 +AL EI+KI ++ G+ PH ++ V G M IN D +E +++ S+I Sbjct: 143 KALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINTD--------IVEAISITDSVIR 194 Query: 266 RTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGA 325 + I I L++ F++ +I G + + L G Sbjct: 195 FFEEEIIGTDINTYLSVESFDQFMDKINKGDLRRFI----------------ELTFKNGM 238 Query: 326 VINGD-FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDT 384 G ++ + VD + P V+E V ++P +K D+ Sbjct: 239 EKTGRAYDRFITVDAILPC-VREGVKKK-----------------RSCKFDPSRIKEVDS 280 Query: 385 NIQQLNE-----QERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 + + ++RYSW KA R+ G ME GPLAR ++ ++ + + R Sbjct: 281 HSFLTKDGTDFSRKRYSWAKAVRYDGLPMETGPLARKAVS---KNSLFQDLISRFG---- 333 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 S L RI R E A L+ + L + N S K E Sbjct: 334 ------DSYLVRIWARIDEIGRMALTLKSY-------LLSINTKEPSYIKPPVKIENLEG 380 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G G EA RG+L H + GKI Y + PTTWN PR + A E A++ Sbjct: 381 EGTGLIEAARGSLLHRLELEKGKIKKYTIITPTTWNLGPRCERYHSPA-EKAIIGL---- 435 Query: 560 PEQPLEILRTLHSFDPCLACSTH 582 E L+ L SFD C C+TH Sbjct: 436 -ESSLKAEMILRSFDVCSVCTTH 457 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 20/175 (11%) Query: 26 RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 R+EG ++ ++ I + I +A FRG E IL+ R P DA RICG+C H + Sbjct: 11 RVEGEIQLKL-IWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICGICGHSHLI 69 Query: 86 ASVYAIED-----AIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 A+V A+ED I + A++IRN+ +H+ FY D++ + Sbjct: 70 ATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMPDFLKL------ 123 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 K ++ + + + N + K + +G W H Y +P Sbjct: 124 --EKDKDILEDFTPLKGDKWKKALGISNEILKIIS------ILSGQWPHTSYAVP 170 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 61/116 (52%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ ++P++RIEGH + + ++ + NA T FRG E IL G + V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 +C +H A++ A + G++ D A I+R ++L + DH + LA D++ Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALPDFLS 117 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCG-TMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+ P +R EGH + ++D+ ++T T RGLE ++ G++P A +RIC Sbjct: 4 RIVISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 GVC H LASV AI+ ++ I+VP ++R LA + +H + +A Sbjct: 64 GVCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIHHFLIA 114 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 19/86 (22%) Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP--KGQIGAYEAALMNTKMA 558 G+G E PRG H A ++D KI Y +VPTTWN P +G Y A Sbjct: 320 GIGVIEGPRGTNVHMANVKDSKIQFYSAIVPTTWNIPTMGPATEGFHHKYGA-------- 371 Query: 559 IPEQPLEILRTLHSFDPCLACSTHVL 584 +++R ++DPCL+C+THV+ Sbjct: 372 ------DVIR---AYDPCLSCATHVM 388 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 76.3 bits (186), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 62/121 (51%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + + +DP+TRIEGH R + ++D+ ++ + T RG E GR + + R C Sbjct: 3 KTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTARTC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS A ++ + +++P A +R ++ H + F+ LA D + +D Sbjct: 63 GICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLGMD 122 Query: 137 A 137 A Sbjct: 123 A 123 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 61/117 (52%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + + P+TRIEGH + ++D+ + ++ RG E ++G+ + V RI Sbjct: 2 GQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 CG+C H LAS A++ G+ P +R +M A D ++HFY LA D++ Sbjct: 62 CGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFV 118 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 57/114 (50%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DPITR+EGH + +V +++ + A RG E+ GR D RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C H +A+ A++D ++ A IR ++ DH +H Y L G D+I Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFI 140 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 76/207 (36%), Gaps = 38/207 (18%) Query: 394 RYSWIKAPRWRG-------NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQ 446 ++ ++K W G + V PLAR +A ++ D SAL + Sbjct: 301 KFCYLKPLGWHGFEEGPASSIYAVAPLARLNVADGMATPLAQKAYDEYFSALGG--KPVH 358 Query: 447 STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTE 506 TL R E AA + M L + ++ + P PT G+G E Sbjct: 359 HTLANHWARVVEILAAAER--------MVELVSDPEILSTDLRTIPTAKPTV--GIGVVE 408 Query: 507 APRGAL-GHWAAIRDGKIDLYQCVVPTTWNAS------PRDPKGQI--GAYEAALMNTKM 557 APRG L H+ G I L +V T NA+ R K I G LMN Sbjct: 409 APRGTLFHHYETDERGLITLANLIVATQNNAARIAMSVDRAAKSLIKQGQVSDGLMNM-- 466 Query: 558 AIPEQPLEILRTLHSFDPCLACSTHVL 584 I ++DPC C+TH L Sbjct: 467 --------IEMAFRAYDPCFGCATHAL 485 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 57/101 (56%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++L + P++RIEGH +N++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 G+C VH LAS A+++ G +VP+ A +R ++ + H Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIH 102 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 8/140 (5%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++P+TRIEGH + V++++ + + FRG E LQGR + V RICG+C Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICD 60 Query: 81 GVHALASVYAIEDAIGIKVPD---NANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 H LA+ A++ G D A +R +M + H H +HFY LA D + Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV----- 115 Query: 138 LKADPRKTSELAQSLSSWPK 157 + RKT + Q + P+ Sbjct: 116 VPNGTRKTRNVFQIIQDMPE 135 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 39/217 (17%) Query: 395 YSWIKAPRWRG-----NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 YSW+K P + V PL+R + DAA PL+ Q L Sbjct: 267 YSWLKFPYIKELGYPEGIYRVAPLSRINVCDKMPDAA--------------PLA--QGAL 310 Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE------KWEPATWPTECRGVG 503 R AQ+ L + + +L+ L + +A + E K+ A T G G Sbjct: 311 EDFRDRFGYAQYP---LLFHWARLIELLASAEMAVDALEQDLSGDKFPDALERTAGEGAG 367 Query: 504 FTEAPRGAL-GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA--LMNTKMAIP 560 EA RG L H+ +G I +V T N +P ++G + A + + + Sbjct: 368 IVEAARGTLIHHYTTDDEGLITQANIIVATIQN----NPAMEMGIQQVAKDYIKPGVEVD 423 Query: 561 EQPLEILR-TLHSFDPCLACSTHVLGDDGSELISVQV 596 ++ ++ + + DPCL+C+TH + D L +V+V Sbjct: 424 DKIFNLMEMVIRAHDPCLSCATHTM-DSQMRLATVEV 459 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/89 (37%), Positives = 54/89 (60%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+LV+DP+TRIEGH + V+++D N + +A FRG E +QG +A F++RIC Sbjct: 3 RKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANI 105 G+C H L A++D +G+ + ++ Sbjct: 63 GICFVSHHLCGAKALDDMVGVGLKSGIHV 91 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 35/208 (16%) Query: 393 ERYSWIKAPRWR-----GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS 447 E +S++K P + ++ VGPL R + E+++R + + + Sbjct: 280 EEWSYMKFPYLKELGREQGSVRVGPLGRMNVTKSLPTPLAQEALERFHAYTKGRTNNM-- 337 Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 TL RA E AA ++ +L+ L P W E GVG EA Sbjct: 338 TLHTNWARAIEILHAAEVVKELLHD--PDLQKDQLVLTPP----PNAWTGE--GVGVVEA 389 Query: 508 PRGAL-GHWAAIRDGKIDLYQCVVPTTWN---------ASPRDPKGQIGAYEAALMNTKM 557 PRG L H+ A G I VV TT N + D G G +MN Sbjct: 390 PRGTLLHHYRADERGNITFANLVVATTQNNQVMNRTVRSVAEDYLGGHGEITEGMMNA-- 447 Query: 558 AIPEQPLEILRTLHSFDPCLACSTHVLG 585 I + ++DPCL+C+TH LG Sbjct: 448 --------IEVGIRAYDPCLSCATHALG 467 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 72.4 bits (176), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/236 (27%), Positives = 98/236 (41%), Gaps = 68/236 (28%) Query: 24 ITRIEGHMRCEVNIN---DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 +TR+EG E ++N ++ VI +A RG+E +L+ R DA RICG+C Sbjct: 8 LTRVEG----EASLNLVWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICGICG 63 Query: 81 GVHALASVYAIEDAIGIK-VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 H +A+V AIE+AIGIK +P+ A I R + T +H+ FY D++ ++L Sbjct: 64 HAHLIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESL- 122 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 Q F+ W Sbjct: 123 -------------------------------------SQFEPFKGERWKR---------- 135 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 A+ F +IVKI A+FGG+ PH ++ V GG+ N E + A+N+ Sbjct: 136 ---------AVQFSSQIVKIIALFGGQWPHSSYAVPGGITS--NFSEREVLKALNL 180 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 116/288 (40%), Gaps = 39/288 (13%) Query: 303 SYGAFPDIANDFGEKSLLMPGGAVINGD--FNNVLPVDL-VDPQQVQEF----VDHAWYR 355 SY I ++F E+ +L V G F + DL + +EF + A+ R Sbjct: 158 SYAVPGGITSNFSEREVLKALNLVKEGKTFFEKNVSEDLELFLNLCEEFNLLSIGKAYNR 217 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKA--PRWRGNAMEVGPL 413 + + + F+ P Y G K N++ + E E + KA R++G E GPL Sbjct: 218 FLSGGGLAYCFN----PSYKKGKGKVCKFNVRYVQELEAADYSKANPVRYKGLPYETGPL 273 Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 AR LI+ + L L + S R+ R E + L+ +L Sbjct: 274 ARELISKNP-------------LVLKLYKNYGDSYAVRVAARLAEIKDLLEILEKLLKEL 320 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTT 533 M +L+ + WE + G G EA RG L H I GKI Y+ + P+ Sbjct: 321 MNHLEEPSCL------WEDRS-DESGEGFGVVEAARGTLIHRVVIEKGKIKDYKVITPSQ 373 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 WN PR K +G E A++ + Q + L SFD C C+T Sbjct: 374 WNLGPRCKK-YLGVAEKAIVGLDSELKAQMV-----LRSFDLCSVCTT 415 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 3/126 (2%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ ++P+TR+EGH + + ++D+ + +A FRG E L+G + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVC VH AS A + G++ + A IR + L + DH Y L D++ Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFV---V 121 Query: 137 ALKADP 142 ++ADP Sbjct: 122 GIEADP 127 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/379 (22%), Positives = 145/379 (38%), Gaps = 68/379 (17%) Query: 206 YLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNMERLNLVQSII 264 +LEA E +K A+ G+ PH ++++ GG+ + + + +NM+ N +Q I Sbjct: 137 WLEACKVASETIKALAIIAGQWPHSSYMIPGGV-----MSDPTKMDLINMQ--NYLQIAI 189 Query: 265 TRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGG 324 D I N + + L+ + + +IG L F D+A + ++ Sbjct: 190 NFFEDSIVNTSLDNYLSFTSVDN-FEKIGGDLK--------LFKDLAFKYELQNYGKSYN 240 Query: 325 AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDT 384 I+ N+ R+ + + + I + + + G +T Sbjct: 241 RFISLSETNLFKKG----------------RFSSKVINKIDLSKILENSDSTFTLSGDNT 284 Query: 385 NIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSG 444 ++++W K + E GPLAR +I+ K ++ D Sbjct: 285 --------QKHTWSKNVTYDDAFFETGPLARAIISNRKFIKDIHKNFD------------ 324 Query: 445 IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGF 504 S R+L R E + + K+ T + S K + + V Sbjct: 325 -DSAFTRVLARLDELAFLLEDTKNLISKVNTKEASFIKPKISLNKID------KVEAVSA 377 Query: 505 TEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPL 564 EA RG+L H I GKI LY + PT WN P + K Q G + A++ T + Sbjct: 378 VEATRGSLYHKIDIEKGKIKLYDVITPTVWNLGPSNKKEQ-GIAQKAIIGT------SSI 430 Query: 565 EILR-TLHSFDPCLACSTH 582 +I + L SFD C C+TH Sbjct: 431 DIAKIILRSFDVCSVCTTH 449 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 22/160 (13%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 V+ + RIEG + + + +I + + FRG E IL+ + P DA + RICG+C Sbjct: 4 VNLVERIEGEAKLNCSWKNGIIIDSRIDFLN-FRGFEYILEDKSPLDALVYTPRICGICG 62 Query: 81 GVHALASVYAIEDAI-----GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV- 134 H A+V +E A +++ A ++R I L H+ FY D I + Sbjct: 63 QAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIKLN 122 Query: 135 ---------------LDALKADPRKTSELAQSLSSWPKSS 159 L+A K LA WP SS Sbjct: 123 SNDLNIYEPLKGKKWLEACKVASETIKALAIIAGQWPHSS 162 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 1/100 (1%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTM-FRGLEIILQGRDPRDAWA 70 +N R+ + P TR EGH + + ++++ ++ A T RG E +L+G+ A Sbjct: 3 VNFVTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPI 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM 110 V RICG+C H +AS AIE+AI +VPD+ ++R ++ Sbjct: 63 AVMRICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELV 102 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 16/98 (16%) Query: 501 GVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G+G EAPR H A + +DGKI Y+ + +TWN P K G Sbjct: 330 GIGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWN-FPIVEKAIEG------------Y 376 Query: 560 PEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 P+Q E++ + ++D C +C+THV+ D ++VR Sbjct: 377 PQQYAEVI--MRAYDICASCATHVIVKDEETKEIIEVR 412 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 58/114 (50%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 V+ +TR+EGH V + D + + R E L+GR +A RICG+C+ Sbjct: 9 VNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHITCRICGICS 68 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 H LAS+ A EDA+GIK + ++R ++L H++H Y L D + V Sbjct: 69 CGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGV 122 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 88/376 (23%), Positives = 138/376 (36%), Gaps = 105/376 (27%) Query: 221 AVFGGKNPHPNW-IVGGMPCAIN-IDESGAVGAVNMERLNLVQSIITRTADFI------- 271 AV GG+ PH ++ IVGG+ C I ID L VQ I +T F+ Sbjct: 133 AVIGGQYPHTSYAIVGGVACEITEID------------LIKVQHYIAQTLKFVEQNLLKV 180 Query: 272 -NNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGD 330 + V + A ++ +EI + + +L YG D FGE S G +V Sbjct: 181 ESEVFLKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSFFKKGKSVKTKV 240 Query: 331 FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLN 390 +N+ VD+ + Q F + ++ D +Y Sbjct: 241 THNISLVDVKESQITSSFAKNVSFK---------------DKYY---------------- 269 Query: 391 EQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG 450 EVGPL+R +I ++ +++ S Sbjct: 270 ------------------EVGPLSRAMI-------------NKTPLIIDVHKKYGDSIFS 298 Query: 451 RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFT--EAP 508 RIL R +E + + +K +L+ S EP+ ++ G G++ EA Sbjct: 299 RILARIYE-------ISQLLEHSRGLIKKIDLSQPSY--IEPSIDISKLSGSGYSAVEAA 349 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 RG L H + G I Y+ + PT WN S R+ G L + K+A E+ Sbjct: 350 RGTLIHRVELESGIIKNYEIITPTQWNLSGGTRENHGVSQRAMVGLSDVKIA------EL 403 Query: 567 LRTLHSFDPCLACSTH 582 + SFD C C+TH Sbjct: 404 V--FKSFDVCSVCTTH 417 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 2/106 (1%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 ++ I +IEG + N + + V + R +E IL+G+ DA R+CG+C Sbjct: 1 MIKIIEKIEGEAKLNFNFKENKIDFVDVEFMST-RNIENILKGKRAFDALVINPRVCGIC 59 Query: 80 TGVHALASVYAIEDAI-GIKVPDNANIIRNIMLATLWCHDHLVHFY 124 H +A+V A+E + + D A IIR + L +H FY Sbjct: 60 GHAHLMATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFY 105 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 63/121 (52%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 N ++ V+ +TR+EGH +++ + + R E +L+GR +A Sbjct: 3 NKTVKIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHITS 62 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C+ H+LAS+ A EDA+G+ + +R ++L + H++H Y LA D + Sbjct: 63 RICGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDVLG 122 Query: 134 V 134 V Sbjct: 123 V 123 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%) Query: 501 GVGFTEAPRGALGH-WAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 GVG E PRG L H + +G I+ C++PT N I E +M I Sbjct: 355 GVGAVEVPRGILFHNYVTDSNGIIEQANCIIPTNQN---------IANIEYDMMKLLPEI 405 Query: 560 PEQP-----LEILRTLHSFDPCLACSTHVL 584 +Q L++ + ++DPC++CS H L Sbjct: 406 LDQTKEEITLKMEMLVRAYDPCISCSAHYL 435 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 1/103 (0%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCG-TMFRGLEIILQGRDPRDAWAFVERICGVC 79 + P TR+EGH + + ++DQ ++ T RG+E + G+ R+CG+C Sbjct: 7 ISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIASRVCGIC 66 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 H LAS A+E +IG ++P +A ++R I+ A H +H Sbjct: 67 PIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALH 109 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 15/90 (16%) Query: 506 EAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLE 565 EAPRG+ H A ++DGK+ Y +VPTTWN P + GA P Q E Sbjct: 377 EAPRGSNIHLARVKDGKVLWYDMLVPTTWNF-PTCSRALTGA------------PWQIAE 423 Query: 566 ILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 ++ + ++DPC++C+TH++ + E I Q Sbjct: 424 MV--VRAYDPCVSCATHMIVVNEEEKIVTQ 451 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 55/112 (49%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 VD I R+EGH V I D V T ++ R E +++GR + RICG+C+ Sbjct: 8 VDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGICS 67 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 H + + AIE G++V D +R +++ + +H H + A D++ Sbjct: 68 SSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFL 119 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%) Query: 500 RGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 R VGFTEAPRGAL H + +G++ + PT N + + ++ A + L+ A Sbjct: 349 RAVGFTEAPRGALFHDLTLDAEGRVTHASILTPTAQNVANLEADMRLLAEK--LVADGAA 406 Query: 559 IPEQPLEILRTLHSFDPCLACSTH 582 LEI + + ++DPCL+CS H Sbjct: 407 EDVVRLEIEKLVRAYDPCLSCSVH 430 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 65.1 bits (157), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 60/114 (52%), Gaps = 3/114 (2%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVIT--NAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 G+ + ++P TR EGH + + ++D ++ N +S T RG E L G+ A V Sbjct: 2 GKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSV-TPVRGFEKFLVGKPAEFAPIAVS 60 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 R CG+C HA ++V AIEDA GI P + ++R + H H +H + +A Sbjct: 61 RFCGICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEFLIA 114 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 4/82 (4%) Query: 54 RGLEIILQGRDPRDAWAFV-ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA 112 RG+E I +GR D F+ ERICG+C H+ A A+E+A GI+VP+ A IR I+L Sbjct: 235 RGIEKISEGRLTYDQVCFIAERICGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLE 294 Query: 113 TLWCHDHLVHF---YQLAGMDW 131 H HL++F L G D+ Sbjct: 295 IERLHSHLLNFGIVSHLVGYDY 316 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 4/101 (3%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV-ERICGVCTGVHALASVYAIED 93 V ++ + V+ + RG+E + + R + F+ ERICG+C H+ A A+E Sbjct: 198 VFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERICGICGYAHSCAYCQAVEQ 257 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLVHF---YQLAGMDW 131 A+GI+VP+ A IR +ML H HL++ LAG DW Sbjct: 258 ALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R +VV+ + R+EGH EV + V + R E IL G+ + RIC Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C + +AS AIE A+GI+V +R + L + H H +H + LA D++ D Sbjct: 62 SICPDPYQVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKD 121 Query: 137 AL 138 A+ Sbjct: 122 AI 123 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 20/191 (10%) Query: 395 YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILC 454 +S K ++G++ G LAR L+ + ES + + ++ P + + + + + Sbjct: 250 HSSAKHSSYKGSSFMTGALARLLLNEKRLYGEAKESYESLRDKID-PRNPFSNNMAQAIE 308 Query: 455 RAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGH 514 + Q A ++ +G L +K P G+ EAPRG L H Sbjct: 309 LLYSVQRA------------MDIIDGLLDEGIKDKLMVEVKPRAGEGIAVVEAPRGLLYH 356 Query: 515 WAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK-MAIPEQPLEILRTLHS 572 + D GK+ V PT NA+ D +I A+ N K ++ E L++ + + Sbjct: 357 HYKLDDNGKVVFANLVTPTAQNAANMDKYLRI-----AVRNLKDLSDDELKLKLEMLVRA 411 Query: 573 FDPCLACSTHV 583 +DPC++CS H+ Sbjct: 412 YDPCISCSVHL 422 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 63.2 bits (152), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 51/87 (58%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 ++I +++ + G + RG+E + + R+P ER+CG+C+ HA+A V A+EDA Sbjct: 26 LDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQVIYLAERVCGICSFSHAIAFVKAVEDA 85 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLV 121 I+VP A IR+++L H H++ Sbjct: 86 AQIEVPIRAQYIRSMVLELERIHSHIL 112 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 60/116 (51%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R + VD I+R+EG +VN+ + + + ++ R + L GR R+ RIC Sbjct: 4 RSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITARIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 G+C + + S+ AIE A ++V + ++R + + + H++H + LA D++ Sbjct: 64 GICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFL 119 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 60/128 (46%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N R L V +TR+EG V + D V + ++ R E L+GR + Sbjct: 1 MNPEIRTLTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDI 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 R+CG+C + +++ AIEDA G+ + +R ++ W H H +H Y L D+ Sbjct: 61 TARVCGICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDF 120 Query: 132 IDVLDALK 139 + DA+ Sbjct: 121 LGYPDAIS 128 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 + +TR+EGH +++ + ++ + R E++L+G A RICG+C+ Sbjct: 11 IHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGICS 70 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI---DVLDA 137 H+LA++ A+E A+ I P A ++R + + H +H + LA D+ VL Sbjct: 71 ISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVLPL 130 Query: 138 LKADPR------KTSELAQSLS 153 +++ P+ + EL S+S Sbjct: 131 MESHPQVVRAGLQLKELGNSIS 152 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 3/88 (3%) Query: 496 PTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P G EAPRG L H+ D G + C++PTT N + + A A L+ Sbjct: 341 PQAGAATGAVEAPRGILYHYMETNDEGMVVRADCIIPTTQNNG--NIYDDLQALAAELLR 398 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH 582 E L+ + S+DPC++CS H Sbjct: 399 EGKCDGEIQLQCEMLVRSYDPCISCSVH 426 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ ++P+TR+EGH + + +++Q + NA F G E L G + V IC Sbjct: 19 KKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVSTIC 78 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 GV GVH ASV A + G++ A IR + + DH Y L D++ Sbjct: 79 GVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFV 134 >UniRef50_UPI0001913F01 hydrogenase 2 large subunit n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. AG3 RepID=UPI0001913F01 Length = 71 Score = 62.4 bits (150), Expect = 5e-08, Method: Composition-based stats. Identities = 25/39 (64%), Positives = 31/39 (79%) Query: 106 IRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRK 144 IRNI+LA HDH+VHFYQL+ +DW+D+ ALKADP K Sbjct: 2 IRNIILAAHTTHDHIVHFYQLSALDWVDITSALKADPEK 40 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 2/127 (1%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + L VD + R+EG V I D V + R E L+GR +A RIC Sbjct: 4 KTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITSRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI--DV 134 G+C + +++V A+ED +G+ V +R ++ W H +H + L D++ D Sbjct: 64 GICPIAYMMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGYDS 123 Query: 135 LDALKAD 141 + A+ D Sbjct: 124 VIAMAGD 130 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 9/87 (10%) Query: 501 GVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G G TEAPRG+L H+ I + G I Q PT N S I + + + Sbjct: 342 GHGCTEAPRGSLYHYYQIDQQGDILAAQIAPPTAQNQS------TIEQDLWQFVEEHIDL 395 Query: 560 PEQPL--EILRTLHSFDPCLACSTHVL 584 PE L + + + ++DPC++CSTH L Sbjct: 396 PENQLRSQCEQVIRNYDPCISCSTHFL 422 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 21/156 (13%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + ++ I ++ I +A FRG E IL+ + D R+CG+C H Sbjct: 9 LNRVEGEIELKL-IWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCGICGHAH 67 Query: 84 ALASVYA-----IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 +A+ A +E+ I+V A IIRNI L+ +HL FY D++ AL Sbjct: 68 LIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLKFNKAL 127 Query: 139 K-------ADPRKTSELAQSL--------SSWPKSS 159 + RK EL+ + WP +S Sbjct: 128 EDFYPIKGKKWRKAVELSSKIVKVIAIFAGQWPHTS 163 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 5/142 (3%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + VD I R+EG E+ + D V ++ R E I G+ +A A RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSF 67 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H L +V A E A+G +V + +R ++ H +H Y L D++ + L Sbjct: 68 CSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPL 127 Query: 139 KADPRKTSEL-----AQSLSSW 155 K + E+ ++L SW Sbjct: 128 KMLDKYKKEINIALDLKNLGSW 149 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 17/102 (16%) Query: 493 ATWPTECR---------GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKG 543 A WP R GV TEAPRG L + ++DG++ + PT +N + + Sbjct: 331 AKWPIRPRDEVDVKDGFGVSTTEAPRGILVYALEVKDGRVAYADIITPTAFNLAMMEVHV 390 Query: 544 QIGAYEAALMNTKMAIPEQPLEIL--RTLHSFDPCLACSTHV 583 ++ A + + PE+ L++L + ++DPC++CS HV Sbjct: 391 RMMAEKHYNDD-----PER-LKLLAEMVVRAYDPCISCSVHV 426 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + R L V +TR+EG + I+D+ V +S R E +L+GR + Sbjct: 6 DTSRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTS 65 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI- 132 RICG+C + L++ A+EDA G+ V +R ++ W +H Y L D++ Sbjct: 66 RICGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLG 125 Query: 133 --DVLDALKADP 142 DV+ +++P Sbjct: 126 HDDVIGMSRSEP 137 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 25 TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHA 84 T +E H R + I D+ + + G +RG+E+I++G P E+ICG+C+ +H Sbjct: 18 TMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKICGICSHIHV 76 Query: 85 LASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV---HFYQLAGMDWI 132 +V E I+VP+ A IR I+ H H++ H +++ G + + Sbjct: 77 WCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLGFETM 127 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV-ERICGVCTGVHALASVYAIE 92 E+ + V+ + RG+E + + R + F+ ERICG+C H+ A A+E Sbjct: 177 ELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVE 236 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 DA GI VP+ A IR IML H HL+ F Sbjct: 237 DAAGIYVPERAQYIRTIMLEVERIHSHLLWF 267 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 3/96 (3%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV-ERICGVCTGVHALAS 87 GH R + ++ +N+I + RG+E + + R + F+ +R+CG+C H+ A Sbjct: 195 GHFR--LFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAY 252 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 ++E+A+GI+VP+ A +IR I+L H HL++ Sbjct: 253 TTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNL 288 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ I ++ VI + G + RGLE + + RD VER+CG+C+ +HAL Sbjct: 19 LHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVERVCGICSCLHALCYCEG 78 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 +E +G++VP A +R T+W H +H + L Sbjct: 79 VEQIMGVEVPRRAKYLR-----TIWGELHRMHSHLL 109 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 47/87 (54%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + + + ++T ++ G RG+E + R +ERICG+C+ H+ A + A+E+ Sbjct: 23 ITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICSHTHSTAYIQAVEEI 82 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLV 121 G+ +P AN IR+++ H HL+ Sbjct: 83 AGLTIPPRANYIRSLVGELERIHSHLL 109 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 56/127 (44%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 N RL + + R+EG R + V ++ R E L+GRD R+ Sbjct: 6 NTDTTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPPDIT 65 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 RICG+C + +++ AIE A G + +R ++ W H +H Y L D++ Sbjct: 66 SRICGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFL 125 Query: 133 DVLDALK 139 DA++ Sbjct: 126 GASDAIE 132 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 15/95 (15%) Query: 496 PTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P G G +EAPRG L H + +G+I + PT+ N + A E L N Sbjct: 342 PRAATGYGVSEAPRGVLYHLYQLDSEGRILRATIIPPTSQNQA---------AIENDLRN 392 Query: 555 T---KMAIPEQPLEIL--RTLHSFDPCLACSTHVL 584 T + + + L L RT+ ++DPC++C+TH L Sbjct: 393 TLAANLTLTDAELTELCERTIRNYDPCISCATHFL 427 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTM-FRGLEIILQGRDPRDAWAFVERICG 77 + +D + RI G + + + V+ +A+ T RG E ++ G++P A V RICG Sbjct: 7 ITLDKVCRIAGEAKL-ILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICG 65 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +C H +A+ AIE AIG+ P N ++R + H + F +AG Sbjct: 66 LCHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHALLFLMVAG 116 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/187 (21%), Positives = 78/187 (41%), Gaps = 33/187 (17%) Query: 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQ 460 P + E + TL++++ G+ RM++ +S G L R + + Sbjct: 234 PYYEFRKEEAARESTTLVSFYDGEKVETGPRARMITYREFR---DESLYGLHLARIEDTR 290 Query: 461 WAAGKLQYFFDKLMTN--LKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI 518 A +L D++ + G++ + P +GVG EAPRG L H+ + Sbjct: 291 LAIQRLGEILDEIRIEEPFRTGDIT------FRPG------KGVGVYEAPRGTLIHYVEL 338 Query: 519 -RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 +G++ + VVPT +N + + + +AA ++ +DPC+ Sbjct: 339 GEEGRVLKSRIVVPTMFNIPVMEEMAKGLSVKAAEAVMRL---------------YDPCI 383 Query: 578 ACSTHVL 584 C+THV+ Sbjct: 384 PCTTHVV 390 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 51/113 (45%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 +DP+TR+EG R V + V + R E +L+G+ P V RICG+C Sbjct: 6 IDPLTRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVARICGLCP 65 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 + L +V A E +KVP + +R + W H H + L D+ + Sbjct: 66 VAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYE 118 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 78/183 (42%), Gaps = 32/183 (17%) Query: 405 GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 G A EVG LAR + K E V+ ++ A N +S + RI+ E +A Sbjct: 260 GKAYEVGALARIYNNFGKLPQDLREKVEGVLPARN----PFKSIIARIV----EVIYALR 311 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPT--ECRGVGFTEAPRGALGHWAAIRD-G 521 + ++ +K E EP + E GVG TEAPRG L H + G Sbjct: 312 EAKHILEKF--------------EGGEPHVEYSIREGEGVGITEAPRGILYHRYRVNSKG 357 Query: 522 KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 ++ V PT+ N + +G L N + + + L + +FDPC++C++ Sbjct: 358 EVVFANIVPPTSQNQRAMEEDVLLGL--KTLKNGDIRVLAEKL-----VRNFDPCISCAS 410 Query: 582 HVL 584 H L Sbjct: 411 HFL 413 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 27/194 (13%) Query: 389 LNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST 448 + +++ S KA ++ EVGPLAR +++ E + + NL S Sbjct: 267 VESEQKGSMAKAVSYKNRMYEVGPLARGMVSK--------EPIVK-----NLHKRYKDSM 313 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 + R+ R HE K + + + + L+ T K E G G EA Sbjct: 314 MTRVFARIHEVAQLLEKNREMLKSIRVDEPSCTLS--DTLKL------YEFEGTGTVEAA 365 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 RG+L H + +GKI Y+ + PT WN S D K + A +A + + M E+ I R Sbjct: 366 RGSLIHRTTVSNGKIANYEIITPTQWNLSHGDEKEKGIAVKAMVGSQSM---EEADFIFR 422 Query: 569 TLHSFDPCLACSTH 582 T FD C C+ Sbjct: 423 T---FDVCSVCTAQ 433 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 6/113 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R ++ I +IEG + + ++ ++ G +RG+E IL G+DPRDA R+C Sbjct: 3 RTVIRKLIEKIEGEAELDYTFANGSIEDVRINFG-FYRGIEEILVGKDPRDALVITPRVC 61 Query: 77 GVCTGVHALASVYAIEDAIG-----IKVPDNANIIRNIMLATLWCHDHLVHFY 124 G+C H +A+V A+E+ + + A IR L+ +H+ Y Sbjct: 62 GICNHAHLIAAVRALENGYASAGWEVVLSPKAKAIREFTLSCELLQNHIKWMY 114 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 1/104 (0%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++ + +IEG E D+ IT+ +RG+E IL+GRDP DA RICG+C Sbjct: 3 IELLEKIEGEAFLEFQ-KDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICG 61 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY 124 H A+ +E + + A IR I +H+ FY Sbjct: 62 HAHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFY 105 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/215 (26%), Positives = 86/215 (40%), Gaps = 49/215 (22%) Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G + + + + NEQ+R S+ K + G E GPLAR + + D + Sbjct: 229 GQKRKTKLTLIEENEQKR-SYAKNVTYNGKYYETGPLARLM-----------QQTDPFVR 276 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST--EKWEPAT 494 + S RI+ R +E +K++ +L +L+ S K + T Sbjct: 277 YFHRRFKD--SITTRIIARIYEVSL-------LIEKIIDHLATIDLSQPSVVESKMQDGT 327 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNAS---PRDP----KGQIGA 547 + EA RG+L H A I GKI+ Y + PT WN S ++P K +G Sbjct: 328 ------AIISIEAARGSLIHQATIHQGKIETYNFITPTQWNLSNGTSQNPSVIQKAIVGT 381 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + + N I R SFD C C+TH Sbjct: 382 SDEKIANL----------IFR---SFDICSVCTTH 403 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 58.2 bits (139), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 5/138 (3%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQ-NVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + ++++PI RI+ + +V + N +T+A + MFRG EI ++ + D R Sbjct: 15 KPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRNKPGPDVIMLSSRE 74 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA--TLWCHDHLVHFYQLAGMDWID 133 CG+C H A E A G P + I+LA +D H L G DW Sbjct: 75 CGICGEHHQFIERIAQEMAQGGNAPPPLG-LETIILANDAAMTYDATAHLTALGGPDWSS 133 Query: 134 VLDALKAD-PRKTSELAQ 150 + + P + E+AQ Sbjct: 134 LFFKVAGYFPSQIYEIAQ 151 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 74/190 (38%), Gaps = 46/190 (24%) Query: 442 LSG---IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 LSG + + + R+ RA EA + + +T LK G +S P++W + Sbjct: 531 LSGGKIVTNAIERMRARAFEAGLDGMGMWIAWMSAITYLKKGMTQVSSMP---PSSWTYK 587 Query: 499 CR-------GVGFTEAPRGALGHWAAIRDGK-IDLY----QCVVPTTWNASPR------- 539 GVG EAPRGA H G +++ Q + PTT N+ PR Sbjct: 588 SNTNTGVALGVGMKEAPRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYDD 647 Query: 540 --------DPKGQIGAYEAALM-NTKMAIPEQP------------LEILRTLHSFDPCLA 578 P G +E LM N +P P E +TL SFDPC Sbjct: 648 GIQTIKPASPTHGAGTFEEVLMGNPDYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCFV 707 Query: 579 CSTHVLGDDG 588 C H++ +G Sbjct: 708 CGVHMVLPNG 717 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 52/111 (46%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 D +TR+EGH VN D + T R E +L GR ++ RIC +C+ Sbjct: 10 DLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVTSRICAICSV 69 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 H +AS+ A E A+G+ V + +R + L H++H LA D + Sbjct: 70 SHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLV 120 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 13/98 (13%) Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 P PT +G+G E PRG L H A D G++ CV+PT N G I Sbjct: 341 PEIDPTAGQGIGAIEVPRGVLFHEYAYDDTGEVTEANCVIPTNQN------HGNIQRDME 394 Query: 551 ALMNTKMAIPE----QPLEILRTLHSFDPCLACSTHVL 584 L+ T + PE LE+L + ++DPC++CSTH L Sbjct: 395 TLVPTIVDHPEDEIKHSLEML--VRAYDPCISCSTHYL 430 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV-ERICGVCTGVHALASVYAIE 92 E+ + ++ + RG+E + + R + F+ ERICG+C H+ A A+E Sbjct: 177 ELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVE 236 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 DA I VP+ A IR IML H HL+ F Sbjct: 237 DATNIYVPERARYIRTIMLEVERLHSHLLWF 267 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 2/111 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTM-FRGLEIILQGRDPRDAWAFVERICG 77 + ++ + RI G + V + + +A+ T RG E ++ G++P A V RICG Sbjct: 4 ITLNKVCRIAGEAKL-VLYEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +C H +A AIE+AIGI P N ++R + H++ F +AG Sbjct: 63 LCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAG 113 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 6/115 (5%) Query: 13 NNAGRRLVVDP--ITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 N+ R + V P IT E GH R + ++ + ++ + RG+E + + R + Sbjct: 178 NSDARVIPVGPLHITSDEPGHFR--LFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEV 235 Query: 70 AFV-ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 F+ +R+CG+C H++A ++E+A+GI+VP A+ IR+I+L H HL++ Sbjct: 236 TFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNL 290 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 56/107 (52%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 + P+TR+EGH V ++ +V ++ R E++L+G+ R+ + RIC +C+ Sbjct: 7 IKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICRICSLCS 66 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 +H + ++ A+E A GI V + R +++ H +H + LA Sbjct: 67 TIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLA 113 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 56/119 (47%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++ TR+EG+ E+ I + V V R E++ GR D RIC +C Sbjct: 6 IEAFTRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAICY 65 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 H++ASV IE A+G+ VP+ ++R + L H +H Y L D DA++ Sbjct: 66 LSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAIR 124 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 42/203 (20%) Query: 395 YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILC 454 YS+ K R++GN VG L R ++ K D T + + Sbjct: 241 YSFAKQSRYKGNIFMVGALPRVML---KHDMLT--------------------PMAKHFY 277 Query: 455 RAHEAQWAAG-----------KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVG 503 H+ + A+G +L Y +K K L E P E G+G Sbjct: 278 EEHKEKLASGYVSFNNLAQAIELLYALEKAKEVAKT--LLDKGIEGENVPIEPQEGEGIG 335 Query: 504 FTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQ 562 + EAPRG L H I + G I + PT +N ++ YE A + Sbjct: 336 YVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIM----ELSLYEEARKRYGSSDETT 391 Query: 563 PLEIL-RTLHSFDPCLACSTHVL 584 L+ L T+ +FDPC++CS H++ Sbjct: 392 FLQKLEETVRAFDPCISCSVHIV 414 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 +D TR+EG + E+ I + V V R E++ GR D RIC +C Sbjct: 8 LDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAICY 67 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIML 111 H++ASV AIE+A+GI+V ++ +R + L Sbjct: 68 ASHSIASVRAIENALGIEVSESVEKLRELAL 98 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 33/198 (16%) Query: 395 YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSG--IQSTLGRI 452 YS+ K ++G + VG LAR L+ K + +D + SG I + L + Sbjct: 241 YSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLDSYKEKIK---SGHVIYNNLAQA 297 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + + + A+ K+ L + + ++ E E + G+G+ EAPRG L Sbjct: 298 IELVYALEVAS--------KIAEELISEGIEKSTCEPSEKSG-----EGIGYVEAPRGVL 344 Query: 513 GHWAAIRDGKIDLYQCVVPTTWN------ASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 H I + +I + PT +N + D + G + +K+ E+ Sbjct: 345 VHHYRIENERIVWSNTITPTAFNQGMMEKSLLEDARNMFGKESETTLKSKLE------EV 398 Query: 567 LRTLHSFDPCLACSTHVL 584 +R +FDPC++CS HV+ Sbjct: 399 VR---AFDPCISCSVHVV 413 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 74/303 (24%), Positives = 116/303 (38%), Gaps = 74/303 (24%) Query: 306 AFPDIANDFGEKSLLMPGGAVINGDFNNVLPV-DLVDP---QQVQEFVD-----HAWYRY 356 A +A F S ++PGG + + ++ + DL+ + ++E +D H R+ Sbjct: 133 AIAILAGQFPHNSYMVPGGVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLERF 192 Query: 357 ----PND---QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAME 409 P D + + G ++ + + GD K + E+ S K + E Sbjct: 193 FENLPKDIGKSLNKFLVLGESNIFKSNGDYKN-------VKEERNKSLSKNALYNNEYYE 245 Query: 410 VGPLARTLIAYHK---------GDAATVESVDRMMSALNLPLSGIQSTLGRI-LCRAHEA 459 VGPLAR +I +K D+ R+ L L L I+ L + LC Sbjct: 246 VGPLARMIINKNKNIKKIYDIYSDSIYTRMCARIYEPL-LLLDYIEQKLSEVDLCEP--- 301 Query: 460 QWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR 519 L N++NG A EAPRG+L H +I+ Sbjct: 302 -----------SFLKPNVRNGKAIVA-------------------VEAPRGSLIHEISIK 331 Query: 520 DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 + KID Y VVPT +N + + A +AALMN +A + FD C C Sbjct: 332 NEKIDYYNIVVPTQFNLASSTKENPSPA-QAALMNEDIAYVDS------VFRCFDICAVC 384 Query: 580 STH 582 +H Sbjct: 385 MSH 387 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + ++ + +I + G RGLE I R+ VERICG+C+ H A+E+ Sbjct: 28 ITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERICGICSFSHNHTYTRAVEEM 87 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLVHF 123 GI+VP+ A IR I+ H HL++ Sbjct: 88 AGIEVPERAEYIRAIIGELERIHSHLLNL 116 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ + D+ ++ + G + RGLE + RD VER+CG+C+ +HA+ Sbjct: 19 LHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIVERVCGICSCIHAMCYCQG 78 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 +E + ++VP A +R I W H +H + L Sbjct: 79 LETMMNVEVPSRAKYLRVI-----WSELHRIHSHLL 109 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 47/91 (51%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ + D+ VI G + RGLE +++ +D ERICG+C+ H+L Sbjct: 20 LHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVAERICGICSFGHSLGYAET 79 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 +E +G++VP A +R I+ H HL+ Sbjct: 80 VEKLMGVEVPRRAEYLRVILHELSRIHSHLL 110 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 A R + P+TR+EG R + I D V + R E L+GR + Sbjct: 2 RATRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITA 61 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C + ++++ AIE + V +R ++ W H +H + L D++ Sbjct: 62 RICGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLG 121 Query: 134 VLDAL 138 AL Sbjct: 122 YDSAL 126 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Query: 496 PTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASP--RDPKGQIGAYEAAL 552 P G G TEAPRG L H I +G I + V PT N P D +G + + Sbjct: 338 PRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIVPPTAQNQRPIEEDLRGVVERF---- 393 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 MN ++ PE L R + ++DPC++C+TH L Sbjct: 394 MN--LSEPELALRCERAIRNYDPCISCATHFL 423 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R ++ ++ + + + G + RG+E I++G+ ER+CG+C+ VH + Sbjct: 21 LRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICSYVHTMTFAEC 80 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 IE I++PD A +R + H HL+ Sbjct: 81 IEHISKIEIPDKAKYLRVVTCELERIHSHLI 111 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 R + D+ + ++ G RG+E +++G A E+ICG+C+ H SV Sbjct: 30 RVRFFVEDEIIKDAEITIGVNHRGIERVMEGLPVEKANMLTEKICGICSNSHTWNSVRTA 89 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 E +G++VPD A IR I+ H HL++ Sbjct: 90 EKGLGVEVPDRAVYIRVIVGELERLHSHLLYL 121 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 15/122 (12%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + ++ + ++ V G RGL+ I R+ ERICG+C+ H A+E+A Sbjct: 28 LTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERICGICSFSHNHTYTRAVEEA 87 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHL---------------VHFYQLAGMDWIDVLDALK 139 GI+VP+ A IR I+ H HL +H LA +DVL+A+ Sbjct: 88 AGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVLHLTWLARERVMDVLEAIS 147 Query: 140 AD 141 + Sbjct: 148 GN 149 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R E + + ++ V G RG+E + R+ ERICG+C+ H A V Sbjct: 21 IRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVVT 80 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 E A+GI+ P A IR I+ H H++ Sbjct: 81 AEKALGIEAPPRAQYIRPIIAELERIHSHIL 111 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 43/91 (47%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R E + + ++ V G RG+E + R+ ERICG+C+ H A V Sbjct: 21 IRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVIG 80 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 E A+GI+ P A IR I+ H H++ Sbjct: 81 SEKALGIEAPPRAQYIRTIIAELERIHSHIL 111 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%) Query: 38 NDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGI 97 D+ VI S + RGLE +++ RD D +RICG+C+ +H+L A+E+ + I Sbjct: 27 EDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHVADRICGLCSFMHSLGYCQAVEEIMSI 86 Query: 98 KVPDNANIIRNIMLATLWCHDHL 120 +VP A +R+I H H+ Sbjct: 87 EVPQRALYLRSIWAELSRIHSHI 109 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 39/72 (54%) Query: 53 FRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA 112 +RG+E L R DA RICG+C H LA+ AIE+A+ +K+ A I+R+I Sbjct: 36 YRGIEQYLVNRHFLDALVINPRICGICGHAHLLATAKAIENALNLKITKKAEILRDITSG 95 Query: 113 TLWCHDHLVHFY 124 +H+ FY Sbjct: 96 LEIIQNHIKWFY 107 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 54/114 (47%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 L V + R+EG ++ ++D + T + R E L+GR+ ++ V RICG+ Sbjct: 9 LCVPVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGI 68 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C + +++V+AIE G +R + W H +H + LA D++ Sbjct: 69 CPVAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFL 122 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 140/372 (37%), Gaps = 86/372 (23%) Query: 217 VKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 +KI A+FGG+ PH ++ V GG+ E A + E L +++ +I + Sbjct: 148 IKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKSFCKELLKSIET-------YIIGIS 200 Query: 276 IPDALAIGQ---FNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFN 332 I L+ + N +IG D LS F K L G Sbjct: 201 IDKYLSFSKDELLNHKEGDIG----DFIRLS-STFDFFHKGIAYKRFLTGG--------- 246 Query: 333 NVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ 392 ++ +VD A + +GI + + DVK DT + +E Sbjct: 247 -----------SIKGYVDAAVFE-----------NGIKESF----DVKNIDT---KEHEF 277 Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 ++ I + E GPLAR + + ++ +E ++ +L L R+ Sbjct: 278 KKIKEITGAVYNKKRFETGPLARKI---NSSNSLFLELLEEFGDSLFL----------RV 324 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + R E ++ D + ++ S K P P +GVG EA RG L Sbjct: 325 MARVDEIVSLTLLIKDALDAI-------DIRKPSYIK-PPIKEPFTGKGVGIVEAARGTL 376 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP--EQPLEILRTL 570 H I +G + Y+ V PT WN +G Y+ + + +I +E +L Sbjct: 377 IHEINIENGFVKDYKIVTPTLWN---------LGNYDEDMSPAQKSIVGLSSDVEAYLSL 427 Query: 571 HSFDPCLACSTH 582 SFD C +C ++ Sbjct: 428 RSFDVCASCVSY 439 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + ++ + + I A GT R IL+ + D+ + R+CG+C H Sbjct: 8 LNRLEGEVELKLEYS-KGKIAKAHILGTSNRDFSSILKAKPYLDSIILIPRVCGICGHAH 66 Query: 84 ALASVYAIEDAIGIKVPD-----NANIIRNIMLATLWCHDHLVHFY 124 +ASV AIEDA + D A+++R I L + +H+ FY Sbjct: 67 LMASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFY 112 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R ++ ++ + V + G + RGLE + D A ER+CG+CT H+ A Sbjct: 18 IRLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVCGICTQHHSTCFCLA 76 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 +E + +++P A +IRNIML H HL+ Sbjct: 77 VESTMKLEIPRRAAVIRNIMLELERLHSHLL 107 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 +++ I +IEG + + + + + T R +E IL+G+ DA R+CG+C Sbjct: 1 MIELIEKIEGEAKLNFSFAGEEIDFVDIEFMTA-RNIEKILEGKSALDALVINPRVCGIC 59 Query: 80 TGVHALASVYAIEDAI-GIKVPDNANIIRNIMLATLWCHDHLVHFY 124 H +A+V A+ED I++ A IIR + L +H FY Sbjct: 60 GHAHLIATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFY 105 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 46/88 (52%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 ++ ++ + V+ + G M RG+E I + + VERICG+C+ H A + A ED Sbjct: 23 KIKLDGERVVDIEMETGWMHRGIEKISEESTFDQSIFVVERICGICSASHPFACINAFED 82 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLV 121 I+VP A IR+++ H HL+ Sbjct: 83 IGEIEVPLKARYIRSLIGELERVHSHLL 110 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 41/81 (50%) Query: 40 QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKV 99 ++VI RG+E +G+ DA ER+CGVC+ HA++ AIE GI Sbjct: 195 EDVINLQAQLFYTHRGIEKTAEGKHFLDAVLVAERVCGVCSASHAVSYAQAIESLAGINA 254 Query: 100 PDNANIIRNIMLATLWCHDHL 120 P A IR ++L ++H+ Sbjct: 255 PLRARYIRTVLLEMERLYNHV 275 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 52/110 (47%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 +TR+EG + + + ++ R +E IL+G++ RICG+C + Sbjct: 8 LTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRICGICPVAY 67 Query: 84 ALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 ++ V AIEDA G+KV +R + W H VH + L D+++ Sbjct: 68 QISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLN 117 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 80/330 (24%), Positives = 132/330 (40%), Gaps = 63/330 (19%) Query: 277 PDALAIGQFNKP-----WSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDF 331 P+ L IG K +IG +S +S G F A+D KS++ Sbjct: 129 PEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPL--------L 180 Query: 332 NNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN--PGDV---KGSDTNI 386 L + + ++ EF +P++++ F + + Y GD+ KG Sbjct: 181 EKALDLSVYALKRFSEF------NFPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTK 234 Query: 387 QQLNE-----QERYSWIKAPRWRGNAME-VGPLARTLIAYHKGDAATVESVDRMMSALNL 440 ++ + Q +S K + G + VGP++R +Y K ++S + L Sbjct: 235 EEFDNVIKEYQVDHSTAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKDI--DLYP 292 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGK-LQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 P I+++ IL R E + + + D +LKN + E Sbjct: 293 P---IKNSFKTILIRMVEIIHSLERSIDLIKDYRKESLKNADYTVK------------EG 337 Query: 500 RGVGFTEAPRGALGH-WAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 G G +EAPRG L H ++ +GKI V PT+ N E ++ N M Sbjct: 338 TGYGVSEAPRGILWHKYSFDSEGKIKKADIVPPTSQNQD---------IMEVSVRNMIMN 388 Query: 559 IPEQPLEILRT----LHSFDPCLACSTHVL 584 E EIL+T + +FDPC++C+TH L Sbjct: 389 -RENIEEILKTGEKVIRNFDPCISCATHFL 417 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 47/92 (51%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 R + + D+ V ++ G RG+E I++G A A E++CG+C+ H S Sbjct: 37 RVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVG 96 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 E A+GI++P+ A +R + H H+++ Sbjct: 97 EGALGIEIPERAVYLRVLAEELERLHSHMLYL 128 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 47/102 (46%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 E+ + + V+ + G + R +E R VER CG+C+ H+ A A+E Sbjct: 21 ELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLVERTCGICSFHHSWAYCLAVEK 80 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 A G++VP+ A IR + H HL++ +A D L Sbjct: 81 AAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTL 122 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%) Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 ER+CG+C VH+ A+EDA GI++P A IR+IM+ H HL+ Sbjct: 231 MAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLL 281 >UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF90_METS5 Length = 379 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 76/185 (41%), Gaps = 40/185 (21%) Query: 403 WRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWA 462 + G +EVGPLA+ L + D M+ L+ + S L R L R A Sbjct: 223 YDGTLVEVGPLAQAL------------TFDDMIVKLHRDMG--PSPLLRELARVRVAA-- 266 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK 522 KL+ L++ + E G+G+ E+ RG L H ++D K Sbjct: 267 ---------KLILGLQDLEI--------ESEGLHIRGDGIGYLESIRGVLVHQVKVKD-K 308 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + Y+ + PTT+NASP GA E A++ + P EI + S D C + Sbjct: 309 VVEYRVIQPTTFNASPG------GALENAVLGIPVRNYRNPWEISLAVSSLDSCFITNVE 362 Query: 583 VLGDD 587 V DD Sbjct: 363 VYLDD 367 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 45/89 (50%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + ++ + ++ V G RG++ I R+ ER+CG+C+ H V A+E+ Sbjct: 27 ITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCGICSFSHNHTYVRAVEEM 86 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLVHF 123 GI+VP+ A IR I+ H HL++ Sbjct: 87 AGIEVPERAEYIRVIVGELERIHSHLLNL 115 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 44/204 (21%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSG---IQSTL 449 E ++ P+W+G E L RT ++SAL PL G ++ T+ Sbjct: 213 EDAGFLARPQWQGRCYESSSLTRT--------------CSPLLSALK-PLHGNGLLRRTV 257 Query: 450 GRI--LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 R+ LCR EA L+ G+ A +P + + GVG EA Sbjct: 258 ARLTELCRLFEA-----------------LRQGD-DGALLAALQPFSAAQDGMGVGAVEA 299 Query: 508 PRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 RG L H ++ +I Y + PT WN P+G + A L + A+ L+ Sbjct: 300 ARGRLLHRVSLEGQQISHYAILAPTEWNF---HPQGVVAQGLAGLQGDRQAV---LLQAH 353 Query: 568 RTLHSFDPCLACSTHVLGDDGSEL 591 + S DPC+ + V+ D EL Sbjct: 354 HVIESIDPCVGYALTVVEADEEEL 377 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%) Query: 67 DAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 D ERICG+C VH+LA A+E+ G+ VP A IR IML H H Sbjct: 223 DVPMMAERICGICGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSH 275 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 GH R ++ + ++ V G RG+E + QG+ A ER G HALA Sbjct: 86 GHFR--FSVLGERILHLEVRLGYQHRGVEQLFQGKSLEQALLLAERAGGEPV-AHALAFC 142 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 A+E A+G++VP A +R ++L HL H LAG+ Sbjct: 143 QAVEAALGVEVPPRAYRLRRVLLELERLFGHLGH---LAGL 180 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 54 RGLEIILQGRDPRDAWAFV-ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA 112 RG+E +GR + F+ ERICG+C H+++ A+E + +PD A IR +ML Sbjct: 249 RGIEKTGEGRLTYNQVLFLAERICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLE 308 Query: 113 TLWCHDHLV 121 H+HL+ Sbjct: 309 LERIHNHLL 317 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 G+ TEA RG L H + DGKI YQ + PT WN P P + ++ A P Sbjct: 305 GLTLTEAARGLLAHRVVLNDGKISQYQILAPTEWNFHPEGPLARA-------LHGLPAGP 357 Query: 561 EQPLEILRTLHSFDPCLACS 580 + + +++ DPC+AC+ Sbjct: 358 DLEWKARLLINALDPCVACA 377 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP---RDAWAFVERICGVCTGVHAL 85 GH R ++ ++++ + RG+E + +GR+ R+A ERI G + H+L Sbjct: 158 GHFR--FSVIGESILRLKARLWFVHRGVEKLFEGRNALGAREAVELAERISGDSSAAHSL 215 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 A A+EDA+G+ VP+ + +R +++ ++H+ LA Sbjct: 216 AHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALA 257 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 6/92 (6%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA----FVERICGVCTGVHALASVY 89 E+ + + V+ + + RG+E + + PR + ERICG+C VH+++ Sbjct: 185 ELYVEGEKVVDVEYNGFHVHRGIEKLAEA--PRFNYQKIPFLAERICGICGFVHSVSYTM 242 Query: 90 AIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 ++E A I VP+ A IR+I+L H HL+ Sbjct: 243 SVERAAKIDVPERAEYIRSIILEIERLHSHLL 274 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 41/83 (49%) Query: 37 INDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIG 96 ++ + ++ V G + RG+E + R VERICG+C+ HA V A+E + Sbjct: 174 VDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVERICGICSTSHAWCFVEAVERLLN 233 Query: 97 IKVPDNANIIRNIMLATLWCHDH 119 ++VP A +R ++ H H Sbjct: 234 MEVPRRAAYLRTLVAELERIHSH 256 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 ERICG+C VH+ A A+E A GI++P A IR++ L H HL+ Sbjct: 218 LAERICGICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLL 268 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 47/108 (43%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 L + ++R+EG + + V + + R E L GR + RICG+ Sbjct: 10 LSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPPDITARICGI 69 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 C + ++S AIE + +P+N +R ++ W H +H + L Sbjct: 70 CPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFL 117 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 35/210 (16%) Query: 385 NIQQLNEQERYSWIKAPRWRGN---AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP 441 + ++E+ + A RW GN GPLAR + Y+ + + + + LN P Sbjct: 243 QFENFFKEEQTDYSNALRWLGNDSAPCVAGPLARFNLNYYLLPPFLRDILKQ--TTLNYP 300 Query: 442 -LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW---PT 497 L+ QS L R++ ++ Y FD+ + L + EP P Sbjct: 301 CLNPFQSILVRLV-----------EVAYAFDEAI------RLIETYEPEGEPCCIDFKPC 343 Query: 498 ECRGVGFTEAPRGALGH-WAAIRDGKIDLYQCVVPTTWN--ASPRDPKGQIGAYEAALMN 554 G G +EAPRG L H + G I + V PT +N ++ D K I ++ + Sbjct: 344 ASLGQGISEAPRGILYHRYHVDEQGIITGAKIVPPTCFNLVSAEEDLKAWIESHPHDSIE 403 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 A EQ + ++DPC++C+TH++ Sbjct: 404 NLSADCEQ------IVRNYDPCISCATHLI 427 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 31/47 (65%) Query: 54 RGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVP 100 +G+E +L+G+D + VER+CGVC HALA A+E G++VP Sbjct: 227 KGIEKLLEGKDLEEGLKIVERVCGVCAVSHALAYCEAVEKLKGMEVP 273 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 49/109 (44%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 +E M + ++ + V++ ++ G + RG+E + R+ ER+C +C+ H Sbjct: 15 LEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCSNSHPQT 74 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 A+E G+ VP A +R I T H+ + LA + D L Sbjct: 75 YCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSL 123 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 2/81 (2%) Query: 30 HMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVY 89 ++CE + V+ + G M +G+E I++GR ++ ER+CG+C+ VH + + Sbjct: 23 RLKCETA--GERVLKTELELGYMKKGIERIMRGRPWQEVMFLAERVCGICSVVHNMVFIE 80 Query: 90 AIEDAIGIKVPDNANIIRNIM 110 +E+ I VP A +R ++ Sbjct: 81 TMEEISDIPVPPRAAYLRVVV 101 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 43/88 (48%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 ++ + D+ V + G R + +++ RD ER+CG+C HAL+ A+E+ Sbjct: 130 KMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVEN 189 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLV 121 + VP A+IIR ++ HL+ Sbjct: 190 IGQVTVPKRADIIRTMICEMERIQSHLM 217 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 39 DQNVITNA-VSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGI 97 D VIT A + RG+E + + + +ERICG+C+ H + +ED + + Sbjct: 30 DGEVITGADLKLSYNHRGIEQAVLSKSYLENIYLLERICGICSHAHTTSFAIGVEDLLDL 89 Query: 98 KVPDNANIIRNIMLATLWCHDHLV 121 VP AN IR ++ H H++ Sbjct: 90 DVPRRANYIRTLIGELERIHSHML 113 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/116 (25%), Positives = 49/116 (42%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG ++ I D + + R E L+GR+P V RICG+C + Sbjct: 12 LARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAVARICGICPLAY 71 Query: 84 ALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 A + A I + +R +M W H +H + LA D++ A++ Sbjct: 72 QAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFLGYRSAIE 127 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 32/67 (47%) Query: 54 RGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLAT 113 +G E I + A ERICGVC HA AIE I++P A IR I++ Sbjct: 212 KGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMEL 271 Query: 114 LWCHDHL 120 ++H+ Sbjct: 272 ERIYNHI 278 >UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TW35_METKA Length = 205 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 14/114 (12%) Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPR 539 +L T T +P+ + C G G EAPRG L H ++ DGK+ Y+ + T N +P Sbjct: 44 DLPTTGTTYKDPSRR-SGCSGTGVIEAPRGTLVHRVSVGSDGKVFNYEIITSTNLNHAPI 102 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPL---------EILRTLHSFDPCLACSTHVL 584 + + +G E ++ K+A ++ L + R SF+PC +C+ H + Sbjct: 103 E-ESMVG--ERVYVDEKLAAAKRQLSESERFLLGDACRAARSFNPCNSCAPHAI 153 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 2/99 (2%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 GH R ++ + V+ + RGLE + GR ER+ G T HALA V Sbjct: 165 GHFR--FSVVGETVLNLKARLWFVHRGLEKLFAGRAVAAGVELAERVSGDTTVGHALAYV 222 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 A+EDA G+ + A IR I+L ++H+ LA Sbjct: 223 RAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALA 261 >UniRef50_Q978D6 Formate hydrogenlyase subunit 3 n=1 Tax=Thermoplasma volcanium RepID=Q978D6_THEVO Length = 389 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 57 EIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIML 111 +I ++G P DA VERI G HA+A A+EDA+ I VP+ R IML Sbjct: 85 KIKVRGLSPEDALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIML 139 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 35/72 (48%) Query: 50 GTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNI 109 G RG+E + R+P +RICG+C HAL A+E I+VPD A +R I Sbjct: 42 GRAHRGIEWMGMRRNPVQILHLCDRICGICGVHHALVFAQAVEQIADIEVPDRAYYVRTI 101 Query: 110 MLATLWCHDHLV 121 + H++ Sbjct: 102 IAEFERIQSHIL 113 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAV-SCGTMFRGLEIILQGRDPRDAWAFVERICG 77 LVV P GHMR V + D ++I + + G + RG+E I + R VER C Sbjct: 352 LVVGPQHPGSGHMRLIVKL-DGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIPLVERPCI 410 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 + + V AIE+A+GI+V + A IR I+ HL Sbjct: 411 TDFANYDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHL 453 >UniRef50_UPI0001874346 putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI0001874346 Length = 454 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 +VDP R +V +D IT + ++ +L G+ D +R+CG+C Sbjct: 17 LVDPF-----EARLDVYRDDNGAITQVSFDLSGLPRIDGMLVGKRALDVPDITKRLCGLC 71 Query: 80 TGVHALASVYAIEDAIGIK-VPDNANIIRNIMLA 112 VH LA V A+ED GI +P A +IR ++ A Sbjct: 72 PVVHHLAGVRAVEDLYGISDIPRTAQLIRELLAA 105 >UniRef50_Q2RV77 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV77_RHORT Length = 406 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 GVG EA RG L H +R+G++ ++ + PT WN P+ GA + L+ ++ Sbjct: 322 GVGMVEAARGLLIHRVVVREGRVARWRILAPTEWNLHPQ------GALASLLIGCPVSGT 375 Query: 561 EQPLEILRTL-HSFDPCLACSTHVLGD 586 E+ + L + DPC+ C +G+ Sbjct: 376 EEACLLAHWLVLALDPCVPCVITAIGE 402 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 41/88 (46%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 ++++ D+ V + G R + +++ RD ERICG C HAL+ ++ED Sbjct: 163 KMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERICGFCNSHHALSFARSVED 222 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLV 121 I +P A + R ++ HL+ Sbjct: 223 IASIDIPPKAKLARTLLCEMERIQSHLL 250 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 49/102 (48%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 + G+ + ++ ++ G + RG E +++ R + A + RIC ++ + Sbjct: 15 MHGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIPRICVPEPDINEMV 74 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 AIE+ GI+VP+ A+ IR I+L +HL+ + G Sbjct: 75 YAMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGG 116 >UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobiluncus RepID=C2KSR5_9ACTO Length = 430 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 4 QYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR 63 Q ET +N ++DP EGH+ V+ +A +E +L G+ Sbjct: 7 QGETMKINLNE-----IIDPT---EGHITVSVDTKGHR---HARFDLQGLPRVESLLVGK 55 Query: 64 DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 +A ER+CG+C H LA A++ +G++V A ++R ++ H + F Sbjct: 56 SAAEALKMTERLCGLCPVAHHLAGTRALDGLVGVRVKSYAEMVRRLLHYGSMIEAHSLRF 115 >UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJU8_9DELT Length = 178 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 501 GVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 GVG EAPRG L H I +GKI ++ T N + +G + A A + N + + Sbjct: 76 GVGICEAPRGTLIHHYGIDEEGKISAVNMIIATGNNNLAIN-QGLLQAARALIQNGQFS- 133 Query: 560 PEQPLEILRTL-HSFDPCLACSTHVLGD 586 E L + L +DPCL+CSTH G Sbjct: 134 -EGALNRIEALVRCYDPCLSCSTHAQGS 160 >UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NIT9_CORDI Length = 347 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 36/55 (65%) Query: 56 LEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM 110 L+ +L GR+ + V+R+CG+C H LA V A++ G++VP++A ++R ++ Sbjct: 35 LDPMLVGRNVAEVPDIVKRLCGLCPVAHHLAGVRALDALCGVEVPESAQLVRLLL 89 >UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83WU9_THIRO Length = 389 Score = 42.0 bits (97), Expect = 0.060, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 15/119 (12%) Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKID 524 +L + T L+ + A + +P G+G A RG L H + DG++ Sbjct: 272 RLSAQLTVVATGLRLLSRCCAGSASAQPTLASGNGVGLGRVFAARGLLAHLVRVEDGRVR 331 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRT-----LHSFDPCLA 578 Y+ + PT WN PR G AL A+P P E +R + + DPC+A Sbjct: 332 DYRILAPTEWNFHPR------GVVARAL----EALPPGPEEQVRRQAELLITAIDPCVA 380 >UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6S7_MAGSA Length = 367 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%) Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 G+G +A RG L H +R+G + Y+ + PT WN P P Q L P Sbjct: 289 GLGVVDAARGLLAHRVELREGLLSAYRILAPTEWNFHPDGPLAQ------GLRGMSGPDP 342 Query: 561 EQPLEILRTLHSFDPCLACSTHVL 584 E +L S DPC+ V+ Sbjct: 343 EGRAALLAA--SLDPCVPFRIEVV 364 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 868 0.0 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 757 0.0 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 711 0.0 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 674 0.0 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 665 0.0 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 631 e-179 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 631 e-179 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 627 e-178 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 621 e-176 UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 618 e-175 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 612 e-173 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 605 e-171 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 604 e-171 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 604 e-171 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 598 e-169 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 597 e-169 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 593 e-168 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 552 e-155 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 550 e-155 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 530 e-149 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 527 e-148 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 505 e-141 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 505 e-141 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 479 e-133 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 477 e-133 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 460 e-127 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 458 e-127 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 437 e-121 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 436 e-120 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 430 e-119 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 423 e-117 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 420 e-116 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 419 e-115 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 417 e-115 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 415 e-114 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 414 e-114 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 398 e-109 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 398 e-109 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 398 e-109 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 394 e-108 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 389 e-106 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 389 e-106 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 389 e-106 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 384 e-105 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 383 e-105 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 376 e-102 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 372 e-101 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 372 e-101 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 369 e-100 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 366 2e-99 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 362 2e-98 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 359 3e-97 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 352 2e-95 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 349 2e-94 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 347 5e-94 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 341 6e-92 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 335 4e-90 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 331 6e-89 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 312 3e-83 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 311 5e-83 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 290 7e-77 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 290 8e-77 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 287 7e-76 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 272 2e-71 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 268 3e-70 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 267 1e-69 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 267 1e-69 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 264 6e-69 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 262 2e-68 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 258 4e-67 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 257 8e-67 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 257 8e-67 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 251 5e-65 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 251 6e-65 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 249 2e-64 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 248 4e-64 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 240 9e-62 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 239 2e-61 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 238 4e-61 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 238 5e-61 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 236 2e-60 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 235 4e-60 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 233 2e-59 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 232 3e-59 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 229 2e-58 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 229 3e-58 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 224 7e-57 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 223 2e-56 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 223 2e-56 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 222 3e-56 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 204 6e-51 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 192 3e-47 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 191 8e-47 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 188 7e-46 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 178 6e-43 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 171 7e-41 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 163 2e-38 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 158 4e-37 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 158 5e-37 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 158 6e-37 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 157 1e-36 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 155 5e-36 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 154 9e-36 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 151 6e-35 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 150 1e-34 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 149 2e-34 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 148 6e-34 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 147 1e-33 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 147 1e-33 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 146 2e-33 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 146 2e-33 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 144 7e-33 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 144 1e-32 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 143 2e-32 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 141 7e-32 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 141 1e-31 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 140 1e-31 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 140 1e-31 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 136 2e-30 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 134 8e-30 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 134 8e-30 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 133 3e-29 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 131 6e-29 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 130 1e-28 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 126 3e-27 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 126 3e-27 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 124 9e-27 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 122 3e-26 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 122 5e-26 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 121 6e-26 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 121 1e-25 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 120 1e-25 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 120 2e-25 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 119 2e-25 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 119 2e-25 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 119 3e-25 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 119 4e-25 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 119 4e-25 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 118 5e-25 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 118 5e-25 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 118 7e-25 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 118 7e-25 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 117 9e-25 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 117 1e-24 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 117 1e-24 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 117 1e-24 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 116 4e-24 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 115 4e-24 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 115 5e-24 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 113 2e-23 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 112 5e-23 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 112 5e-23 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 112 5e-23 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 111 6e-23 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 111 7e-23 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 111 9e-23 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 110 2e-22 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 110 2e-22 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 109 2e-22 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 106 2e-21 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 105 4e-21 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 104 1e-20 UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit... 103 2e-20 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 103 2e-20 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 103 2e-20 UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanom... 100 2e-19 UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales... 99 5e-19 Sequences not found previously or not previously below threshold: UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 166 2e-39 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 104 1e-20 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 104 1e-20 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 104 1e-20 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 101 8e-20 UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8... 101 9e-20 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 98 7e-19 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 96 2e-18 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 96 5e-18 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 95 9e-18 UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methan... 90 2e-16 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 89 3e-16 UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobil... 88 7e-16 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 88 8e-16 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 88 9e-16 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 88 1e-15 UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment... 87 2e-15 UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 86 3e-15 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 86 4e-15 UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alp... 86 5e-15 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 85 6e-15 UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteoba... 85 6e-15 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 85 8e-15 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 84 1e-14 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 84 1e-14 UniRef50_Q2RV77 Putative hydrogenase expression/formation protei... 84 1e-14 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 84 2e-14 UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 84 2e-14 UniRef50_UPI0001874346 putative reducing hydrogenase alpha subun... 83 2e-14 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 83 4e-14 UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Le... 83 4e-14 UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 ... 82 6e-14 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 82 6e-14 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 82 7e-14 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 82 8e-14 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 81 2e-13 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 80 2e-13 UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acid... 80 3e-13 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 80 3e-13 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 79 4e-13 UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax... 79 5e-13 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 79 6e-13 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 78 7e-13 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 78 8e-13 UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 78 9e-13 UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferroo... 78 9e-13 UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 78 1e-12 UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus te... 77 2e-12 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 77 2e-12 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 77 2e-12 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 77 2e-12 UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodom... 77 2e-12 UniRef50_P28153 Hydrogenase expression/formation protein hupK n=... 77 2e-12 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 76 3e-12 UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83W... 76 3e-12 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 76 3e-12 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 76 4e-12 UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 76 5e-12 UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodops... 76 6e-12 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 75 6e-12 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 75 6e-12 UniRef50_C0VXU6 Reducing hydrogenase alpha subunit n=2 Tax=Coryn... 75 8e-12 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 75 8e-12 UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit... 75 8e-12 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 75 9e-12 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 75 9e-12 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 75 9e-12 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 74 1e-11 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 74 1e-11 UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehal... 74 1e-11 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 74 1e-11 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 74 1e-11 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 74 1e-11 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 74 2e-11 UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 ... 74 2e-11 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 74 2e-11 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 73 2e-11 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 73 3e-11 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 73 3e-11 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 73 4e-11 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 73 4e-11 UniRef50_Q2BN45 Putative hydrogenase expression/formation protei... 73 4e-11 UniRef50_C6P4F4 Putative hydrogenase expression/formation protei... 73 4e-11 >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 868 bits (2242), Expect = 0.0, Method: Composition-based stats. Identities = 597/597 (100%), Positives = 597/597 (100%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL Sbjct: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL Sbjct: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG Sbjct: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA Sbjct: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC Sbjct: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ Sbjct: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 Query: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY Sbjct: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG Sbjct: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD Sbjct: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR Sbjct: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 757 bits (1954), Expect = 0.0, Method: Composition-based stats. Identities = 387/600 (64%), Positives = 479/600 (79%), Gaps = 4/600 (0%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS +Y+TQGYT+ +AGRRLVVDP+TRIEGH+RCEVNIND NVITNAVSCGT+FRG+EIIL Sbjct: 1 MSYEYKTQGYTVVDAGRRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +GRDPRDAWAF ERICGVCTG HALASV+A+E+A+GI +PDNANIIRN+M L HDHL Sbjct: 61 KGRDPRDAWAFTERICGVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VH Y L G+DW+DV+ A KADP+ TSELAQ LS WP SSPGYF V+++L K + QLG Sbjct: 121 VHLYHLTGLDWVDVVSASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IF NGYWGHP YKL PEANLM AHY+EALDFQ+++V IH +FGGKNPHPNW+VGG+PC+ Sbjct: 181 IFTNGYWGHPAYKLSPEANLMVVAHYIEALDFQKDVVHIHTIFGGKNPHPNWLVGGVPCS 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 +NID GA +N ERL+ V +I R F V+IPD LA+ F W IG GLS Sbjct: 241 LNIDGVGAADVINQERLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLS 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR-YPND 359 VL+YG PDIAND+ E SLLMP GA+ING+FN VLPV L +P+++QE V+H+WY+ YP Sbjct: 301 VLAYGGIPDIANDYTENSLLMPPGAIINGNFNEVLPVSLTNPEEIQETVNHSWYKPYPAG 360 Query: 360 QVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 + G HP++GIT+P YNPG ++KG+ T+++Q++E++RYSW+K P WRG+ MEVGPLAR LI Sbjct: 361 KTGLHPWEGITEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLI 420 Query: 419 AYHKGDAATVESVDRMM-SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 Y + + VD + A +P++ +QSTLGRI R+ E WAA K++YF+D+L+TNL Sbjct: 421 GYARKNDDIKGLVDDFLGRAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNL 480 Query: 478 KNGNLATASTEKWEPATWPT-ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNA 536 KNG ATA+T KW+P +WPT E RGVGFTEAPRGALGHW IRD KI+ YQCVVPTTWN Sbjct: 481 KNGVRATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNG 540 Query: 537 SPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +PR P GQ+ AYEA+LMNT+MAIPEQPLEILRTLHSFDPCLACSTH++G DG +L++V++ Sbjct: 541 APRSPDGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 353/619 (57%), Positives = 453/619 (73%), Gaps = 26/619 (4%) Query: 3 TQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG 62 + Y TQG+ +++ GRR+VVDP+TRIEGHMRCEVN++ NVI NAVS GTM+RGLE+IL+G Sbjct: 2 SAYATQGFNLDDRGRRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKG 61 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 RDPRDAWAFVERICGVCTG HALASV A+E+A+ I++P NA++IR IM TL HDH VH Sbjct: 62 RDPRDAWAFVERICGVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVH 121 Query: 123 FYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRLKKFVEGGQLGI 181 FY L +DW+DV+ ALKADP++TSEL Q +S P SS GYF D+QNRLK+FVE GQLG Sbjct: 122 FYHLHALDWVDVMSALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGP 181 Query: 182 FRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI 241 F NGYWG Y LPPEANLM HYLEALD Q+E VKIH +FGGKNPHPN++VGG+PCAI Sbjct: 182 FMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAI 241 Query: 242 NIDESGAVGAV-NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI-GTGLSDK 299 N+D GA A NMERL+ V++ I +F NV +PD LAIG K + G GL+ Sbjct: 242 NLDGIGAASAPVNMERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAAT 301 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND 359 VL YG +P++A + + + +PGGA++NG+++ V PVD D QQVQEFV H+WY+Y ++ Sbjct: 302 NVLDYGEYPNVA--YNKSTDQLPGGAILNGNWDEVFPVDPRDSQQVQEFVSHSWYKYADE 359 Query: 360 QVGRHPFDGITDPWYNPG-DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 VG HP+DG+T+P Y G + KG+ T I+Q++E +YSWIK+PRWRG+AMEVGPL+R ++ Sbjct: 360 SVGLHPWDGVTEPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYIL 419 Query: 419 AYHK---GDAATVESVDRM-----------MSALNLPLSG------IQSTLGRILCRAHE 458 AY G+ +++ AL LP + + ST+GR L RA E Sbjct: 420 AYAHARSGNKYAERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALE 479 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI 518 +Q+ + + L+ N++ G+ ATA+ +KW+PATWP + +GVG APRGALGHW I Sbjct: 480 SQYCGEMMHSDWHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRI 539 Query: 519 RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 +DG+I+ YQCVVPTTWN SPRD KGQIGA+EA+LMNT M PEQP+EILRTLHSFDPCLA Sbjct: 540 KDGRIENYQCVVPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLA 599 Query: 579 CSTHVLGDDGSELISVQVR 597 CSTHV+ +G EL +V+VR Sbjct: 600 CSTHVMSAEGQELTTVKVR 618 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 307/629 (48%), Positives = 399/629 (63%), Gaps = 61/629 (9%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RLVVDPITRIEGH+R E ++ + A S GT RG+E+ILQGRDPRDAWAF +RICG Sbjct: 9 RLVVDPITRIEGHLRIEAEMDGNTIKQ-AFSSGTSVRGIELILQGRDPRDAWAFAQRICG 67 Query: 78 VCTGVHALASVYAIEDA----------IGIKV---------------------------- 99 VCT VH +ASV A+EDA +G+ + Sbjct: 68 VCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSIG 127 Query: 100 ---------PDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQ 150 P NA +IRNIM+AT + HDH++HFY L +DW+DV+ AL ADP +T+ LA Sbjct: 128 VLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLAG 187 Query: 151 SLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEAL 210 LS +P+SSPGYF DV+ ++K VE GQLGIF N YWGHP YKLPPE NLM AHYL+AL Sbjct: 188 QLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDAL 247 Query: 211 DFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADF 270 +QRE+VK+H +FGGKNPHPN++VGG+P IN+ A +N RL +Q IT+ F Sbjct: 248 TWQREVVKVHTIFGGKNPHPNFVVGGVPSPINL---NASTGINTSRLVQLQDAITQMKSF 304 Query: 271 INNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGD 330 ++ V PD +AI + K W G GL + L+YG P + D + S L P GA++ D Sbjct: 305 VDQVYYPDIVAIAGYYKEWGTRGEGLGN--FLTYGDLPMTSMDDPD-SFLFPRGAILGRD 361 Query: 331 FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV-GRHPFDGITDPWYNPGDVKGSDTNIQQL 389 + V +DL DP ++QEFV +WYRY G HPF+G T Y G + L Sbjct: 362 LSKVHDLDLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYT-----GPKPPYKHL 416 Query: 390 NEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 N YSW+K+PRW+G+AMEVGPLAR L+ Y K DAA + V+R +S L+L S + STL Sbjct: 417 NVGAEYSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILDLETSALFSTL 476 Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR 509 GR L RA E + +LQ ++D+L+ N+ G+ T + ++P WP + +GVG EAPR Sbjct: 477 GRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQGVGVMEAPR 536 Query: 510 GALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK-MAIPEQPLEILR 568 GALGHW +++GKI+ YQCVVPTTWNA PRDP Q GAYEAAL + + P+QPLEILR Sbjct: 537 GALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLEILR 596 Query: 569 TLHSFDPCLACSTHVLGDDGSELISVQVR 597 TLHSFDPCLAC+ HV+ + G E + ++VR Sbjct: 597 TLHSFDPCLACAVHVMDETGEERLRLKVR 625 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 283/578 (48%), Positives = 393/578 (67%), Gaps = 17/578 (2%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RLV+DP+TRIEGH+R E + V + A S GTM RG+EIIL+GRDPR+AWAF +RICG Sbjct: 3 RLVIDPVTRIEGHLRIEAELEGNRVKS-AYSSGTMVRGIEIILKGRDPREAWAFAQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VCT VHA AS+ A+EDA+ IKVP NA++IR +M+ TL+ HDH+VHFY L +DW++ + A Sbjct: 62 VCTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPIQA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 LKADP KTSELAQ LS + KSSP YF +VQ+++++ VE QLGIF GYW HP Y+LPPE Sbjct: 122 LKADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLPPE 181 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANLM AHYL+AL++Q +IV++H +FGGKNPHPN++VGGM C I++ A+NM++L Sbjct: 182 ANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHPNFVVGGMACPIDLQSD---TAINMDKL 238 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++S+I +F+ V +PD +AI F K W E G G+ + VL P+ + E Sbjct: 239 GRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVL---GEPE-GDSHREG 294 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYP-NDQVGRHPFDGITDPWYNP 376 +P + + + N + VD +++E+V H++Y+Y D+ G HPF+G T Y Sbjct: 295 KFFIPPTFIRDRNLENY---EDVDYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYT- 350 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G + QQLN + +YSW+KAPR+RG EVGPLAR L Y + + E V+ +S Sbjct: 351 ----GPEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSYLS 406 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 L LP++ + ST+GR L R E A ++ ++D+L+ N+K+G+ T + EKWEP+TW Sbjct: 407 KLGLPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTWE 466 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + +G+G EAPRG+L HW I+DGKI YQ VVPTTWN SPRD KGQ YEA+L+ + Sbjct: 467 KDAKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGHE 526 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 + P++PLEI+RT+HSFDPCLAC+ H+ D +I + Sbjct: 527 LVNPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 631 bits (1628), Expect = e-179, Method: Composition-based stats. Identities = 255/595 (42%), Positives = 356/595 (59%), Gaps = 32/595 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + ++VDPITRIEGH+R E I++ N I +A S TMFRG+E IL+GRDPRD RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCTG H S+ A+EDA I +P NA ++RN++ L+ HDHLVHFY L +D++DV+ Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 137 ALKADPRKTSELAQSLSSWPKSSP-----GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 A KA+P T+ AQ + P F VQ+R+ KFV+ G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVG 250 YKL PE NL+G AHYL+ALD QR++ K+ A+FGGKNPHP I VGG+ C +I Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK------ 274 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKP-WSEIGTGLSDKC--------V 301 N R+ L + ++ + +FI +PD G ++ L Sbjct: 275 --NPARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSY 332 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV 361 +SYG F F +L P G V++GD + L VDP ++ E V H+WY Sbjct: 333 MSYGDFRLDDTGFYNSEMLFPSGLVLDGDISKALD---VDPNKITEDVTHSWYE--GTGA 387 Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYH 421 HP++G T P Y + K L +E+YSWIK+P + G +EVGPLAR +I Y Sbjct: 388 PEHPYEGTTIPKYTGLEKKA--DGYSYLKTEEKYSWIKSPLYDGKKVEVGPLARMVIGYV 445 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 KGD + V + NLP++ + ST+GR RA E + + + D+L N +G+ Sbjct: 446 KGDKRITKYVGNFLKRANLPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAASGD 505 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 L+T + ++ + + +G+G EAPRG+LGHW +++GK++ YQ VVP+TWNA PR P Sbjct: 506 LSTWTEFDFDKVSV--DTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRGP 563 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 KG+IGAYE +L+ TK+A PE+PLEI+RT+HSFDPC+AC+ HV+ G EL +V Sbjct: 564 KGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 631 bits (1626), Expect = e-179, Method: Composition-based stats. Identities = 261/587 (44%), Positives = 372/587 (63%), Gaps = 21/587 (3%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 A R+V+DPITRIEGH+R E+ + NA +C T FRG+E IL+GRDPRDAWAF +R Sbjct: 2 ATERIVIDPITRIEGHLRIELEAEGGRI-GNAWACATQFRGIEKILEGRDPRDAWAFAQR 60 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGVCTGVHA+AS+ A+EDAI ++P++A +IRN++ DH++HFY L +DW+DV Sbjct: 61 ICGVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVDV 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + AL ADP TS LA S+S WP +S +F +VQ R+ +GG LGIF +GYWGHP Y+L Sbjct: 121 MSALAADPAATSRLAASVSPWPNNSVSWFKEVQQRVATSAKGG-LGIFASGYWGHPAYRL 179 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 PPEANLM AHYLEAL +QRE++K+H +F GKNPHPN++VGGM +IN+D +N Sbjct: 180 PPEANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYLVGGMATSINLDNQ---LTINK 236 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 RL+ + I + F++ V PD +AI F ++ IG + AF Sbjct: 237 VRLDQLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTPA 296 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN-DQVGRHPFDGITDPW 373 G+ + G +++GD+ P +P+ V E+V AWY YP D+ G HP+ G T+P Sbjct: 297 GKP---VAAGLLMDGDYRTPHP---FNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEPH 350 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 Y G +L++QE+Y+W KA R+ G ++VGP AR ++AY +G TV+ +R Sbjct: 351 YT-----GPKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLANR 405 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + L + + STLGR CRA E+ A +++ +F L +++G+++T + + WEP Sbjct: 406 DLGILKAGVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEPE 465 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 +WP + +G+GF EA RG L HW I +G+I YQCVVP+TWN+S RD G +G YE AL Sbjct: 466 SWPKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQALA 525 Query: 554 NT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 + ++P+E+LRT+HSFDPCL+C+ H+L G V+VR Sbjct: 526 GDKKHPLVDAKRPVEVLRTIHSFDPCLSCAVHMLIPGGPA-FEVKVR 571 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 627 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 266/588 (45%), Positives = 373/588 (63%), Gaps = 20/588 (3%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 R+V+DP+TRIEGH+R E+ VI NA + T +RG+E+I RDPRD WAFVE Sbjct: 10 PESSRVVIDPVTRIEGHLRVEMEA-GDGVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVE 68 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICGVCTG HA+A++ A+EDA+ VP A ++R+++ L DH++HFYQL MDW+D Sbjct: 69 RICGVCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVD 128 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 V+ ALKADP +T+ +A+SLS WP SS YF VQ +LK + GQ IF NGYWGHP YK Sbjct: 129 VMSALKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYK 188 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPE NL+G AHYL+AL +QR+++KIH + GGKNPHPN++VGGM CAIN++ A+N Sbjct: 189 LPPEVNLLGVAHYLQALVWQRDMIKIHTILGGKNPHPNFLVGGMACAINMNND---QAIN 245 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 L+ ++ ++ DFI+ V PD +AI F K ++ IG S+ GA +I Sbjct: 246 QFSLSYLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIG--ASNPNFFCTGAPSEINTG 303 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND-QVGRHPFDGITDP 372 ++ G ++NGD+ NVLP D +++EFV +WYRY G P+DG T+ Sbjct: 304 APAGKGMIKPGVLLNGDYRNVLP---FDQDKIREFVTSSWYRYTEGRDAGLAPYDGETNA 360 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 YN G + L++ +Y+W+KAPR+ G+AM VGP AR +I Y +G A VE VD Sbjct: 361 DYN-----GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVD 415 Query: 433 RMMSALNLPLSG--IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 L LP + STLGR+ RA +A + ++ ++NG +T + EKW Sbjct: 416 AACDKLGLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKW 475 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 EP TWP+ C+GVG+ EAPRG+L HW I +G+ YQ VVP+TWN+S RD GQ+G YE Sbjct: 476 EPETWPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEY 535 Query: 551 ALMNT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 +L +T + P +P+E LRT+HS+DPC +C+ H+ ++G +++ Q Sbjct: 536 SLAHTGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILTRQ 583 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 621 bits (1601), Expect = e-176, Method: Composition-based stats. Identities = 299/628 (47%), Positives = 403/628 (64%), Gaps = 53/628 (8%) Query: 18 RLVVDPITRIEGHMRCEVNIND-QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+DP++RIEGH+R E+ +++ + +TNAVS GTM+RG+E+I++ RDPR+ WAF +RIC Sbjct: 4 RVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCT +HALASV IEDA+ I++P NAN IRNIML TL+ HDHLVHFY L +DW+ L+ Sbjct: 64 GVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVSPLE 123 Query: 137 ALKADPRKTSELAQSL---------------------SSWPKSSPGYFFDVQNRLKKFVE 175 A+KADP T+ L + +PK++PGYF Q+++K V+ Sbjct: 124 AVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKNLVQ 183 Query: 176 GGQLGIFRNGYWGHPQYK-LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV 234 GQLGIF +W HP YK LPPE +L+ +HYL LD QRE+V H VFGGKNPHP++IV Sbjct: 184 SGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPHYIV 243 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFN--KPWSEI 292 GGM C+I++D+ A +NMERL +V+ + A+ N + D LAIGQ K W+ Sbjct: 244 GGMNCSISMDDMNA--PINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGWT-Y 300 Query: 293 GTGLSDKCVLSYGAFPDIA------NDFGEKSLLMPGGAVIN-------GDFNNVLPVDL 339 G GLS + VL YG +PD D+ +K L G V N + + DL Sbjct: 301 GGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLTNKDL 360 Query: 340 VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIK 399 +P +QE+V H+WY+YPN+ G HP++GITDP+Y G +G+ T+ + L+E +YSWIK Sbjct: 361 TNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYT-GPKEGTKTHWKYLDENGKYSWIK 419 Query: 400 APRWRGNAMEVGPLARTLIAYHK----------GDAATVESVDRMMSALNLPLSGI-QST 448 PRW+ EVGPLAR +I Y D V +D + LNLP +T Sbjct: 420 EPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPTT 479 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 +GR RA E Q A YF KL N+K G+ + A+ EKWEP+TWP++ +GVG TEAP Sbjct: 480 VGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEAP 539 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 RGALGHW I+DGKI+ YQ VVPTTWN SPRD KGQ GA+E ++ +T + I ++PLEILR Sbjct: 540 RGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEILR 599 Query: 569 TLHSFDPCLACSTHVLGDDGSELISVQV 596 ++HSFDPCLACSTHV E++S ++ Sbjct: 600 SIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 618 bits (1593), Expect = e-175, Method: Composition-based stats. Identities = 249/592 (42%), Positives = 355/592 (59%), Gaps = 38/592 (6%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+ +DP+TRIEGH+R + I + V++ A + GTM+RG+E I++ RDPRDAW V+RI Sbjct: 2 SQRITIDPVTRIEGHLRIDCEIEN-GVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLP Sbjct: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPH-PNWIVGGMPCAINIDESGAVGAVNM 254 PE NL+ AHYL+AL+ QR+ ++ A+ GGK PH N VGG+ IN+D G +N+ Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV---LNL 237 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ERL ++S I + +DF+ V D I F W G G ++Y + P+ D Sbjct: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDS 292 Query: 315 GEKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGIT 370 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTT 349 Query: 371 DPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 P Y+ ++ +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 350 IPAYDGW------------SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 Query: 431 VDRM------MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 ++ + ++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ Sbjct: 458 FVKPNIPATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD 514 Query: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 515 VGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 236/581 (40%), Positives = 330/581 (56%), Gaps = 42/581 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +VVDP+TRIEGH+R EV + + + NA S T+FRGLEIIL+GRDPRDA F +R CGV Sbjct: 25 IVVDPVTRIEGHLRIEVEVENGK-VKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGV 83 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 CT HALAS +++A+G+ +P NA IRN++L + HDH+VHFY L +D++DV AL Sbjct: 84 CTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAAL 143 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--GHPQYKLPP 196 KADP K +++A S+S K++ VQ++LK FVE GQLG F N Y+ GHP Y L P Sbjct: 144 KADPAKAAKVASSISPR-KTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDP 202 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNME 255 E NL+ AHYLEAL Q + + AVFG KNPH + +VGG+ C A+ + Sbjct: 203 ETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC---------YDALTPQ 253 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 R+ +++ T F++ V IPD L + K W++ G +++G FP +++ Sbjct: 254 RIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG---GTDNFITFGEFPK--DEYD 308 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 S G V DF N+ P D + Q++E V H+WY RHP+ G T P Y Sbjct: 309 LNSRFFKPGVVFKRDFKNIKPFDKM---QIEEHVRHSWY---EGAEARHPWKGQTQPKYT 362 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 L+ +RYSW+KAPR+ G ME GPLA+ LIAY +G D ++ Sbjct: 363 ------------DLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 410 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 + L + + STLGR R E A + + N+ G+ + P Sbjct: 411 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVICA-----PWEM 465 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + GVGF APRG L HW I DGKI +Q VVP+TW PR K ++ EA+L+ T Sbjct: 466 PKQAEGVGFVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGT 525 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +A ++P+EILRT+HSFDPC+AC HV+ +E+ ++ Sbjct: 526 PVADAKRPVEILRTVHSFDPCIACGVHVIDGHTNEVHKFRI 566 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 244/588 (41%), Positives = 363/588 (61%), Gaps = 26/588 (4%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 A R+VVDPITRIEGH+R E+ +D+ + + A + T FRG+E +++G DPRD WAFV R Sbjct: 2 ATERVVVDPITRIEGHLRIELEADDKKI-SKAWAETTQFRGIETVVKGHDPRDVWAFVGR 60 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGVCTG H++ASV A+EDA I +PD A IR ++L + HDH+VHFY L +D+++V Sbjct: 61 ICGVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVNV 120 Query: 135 LDALKADPRKTSELAQSL-SSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + A +ADP+K + A S+ S+W ++ F +V+ ++ ++ GQL +F GYW HP Y+ Sbjct: 121 VSAAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDYR 180 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPEANLM +HYL+AL FQR I++I+ VFGGKNPHPN++VGGM C+I+ D+S V V+ Sbjct: 181 LPPEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHPNFLVGGMACSIDPDKSETVNQVS 240 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 L+ ++ DF+ N PDA+AI K + +IG S L+ G + Sbjct: 241 ---LDQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQ--SSPNFLAVGMAGATYSG 295 Query: 314 FGEKSLL------MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN-DQVGRHPF 366 +S + + G ++GD + V P +P ++ E + AWY Y + D+ P Sbjct: 296 DPAESRIPTIHPEIKPGVFLDGDLHTVHP---FEPWKITEGISSAWYTYADGDEAQLTPD 352 Query: 367 DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 G T P Y G + L + ++Y+W KAPR+ G AM++GP+AR L+AY++G++ Sbjct: 353 VGETTPQYT-----GPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGEST 407 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY-FFDKLMTNLKNGNLATA 485 TV+ VD + L + L + ST GR L RA E+ A + + + + +G++ Sbjct: 408 TVKLVDDALKTLGITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDVF 467 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 + KWEP++WP E +G+ F E RG L H+ ++D K++ YQ VVPTTW ASPRD GQ+ Sbjct: 468 NGSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPRDKTGQL 527 Query: 546 GAYEAALMNT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 G YE AL + ++PLE+LRT+HSFDPC+AC+ H++ +G E Sbjct: 528 GPYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 604 bits (1558), Expect = e-171, Method: Composition-based stats. Identities = 275/628 (43%), Positives = 393/628 (62%), Gaps = 53/628 (8%) Query: 17 RRLVVDPITRIEGHMRCEVNIND-QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+VVDPI+RIEGH+R E+ +++ + +A+S GT +RG+E++ + RDPRD WAFV+RI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT HALA++ A+EDAIGI +P NAN IRNIM ++L HDH+VHFY L +DW+ + Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 136 DALKADPRKTSELAQSL----------------------SSWPKSSPGYFFDVQNRLKKF 173 AL ADP KT++L + +PK++ YF VQ ++KK Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 174 VEGGQLGIFRNGYWGHPQYKL-PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW 232 VE GQLGIF +W HP Y L PPE +LM +HYL LD QR+IV H VFGGKNPHP++ Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI 292 IVGGMPC+I++++ A +N +RL V+ I T D ++N +PD LAIG+ I Sbjct: 242 IVGGMPCSISMNDMNA--PINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMI 299 Query: 293 -GTGLSDKCVLSYGAFPDIA------NDFGEKSLLMPGGAVING----DFNNVLPV---D 338 G GL+ K V+SYG +PD D+ +K ++ G V N D +P+ D Sbjct: 300 DGGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEGKD 359 Query: 339 LVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWI 398 +DPQ + E VDH+W+ YP+ HP +G+TDP + G G+ + L+E ++YSWI Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFT-GPKSGTKEKWEFLDEDKKYSWI 418 Query: 399 KAPRWRGNAMEVGPLARTLIAYHK-----------GDAATVESVDRMMSALNLPLSGIQS 447 K+P ++G EVGPLA+ ++ Y K ++ V +D + L +P + Sbjct: 419 KSPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMT 478 Query: 448 TL-GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTE 506 T+ GR CR +AQ AA QYFF+KL++N+KNG+ A K+EP TW + +GVG + Sbjct: 479 TMVGRTACRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNTWDKDAKGVGLVD 538 Query: 507 APRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 APRG LGHW I+DG+ YQC+VP+TWNA P+ + GAYE ++++T + I ++PLEI Sbjct: 539 APRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLEI 598 Query: 567 LRTLHSFDPCLACSTHVLGDDGSELISV 594 L+ +HSFDPCLAC+TH+ G +++SV Sbjct: 599 LKVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 604 bits (1556), Expect = e-171, Method: Composition-based stats. Identities = 244/601 (40%), Positives = 340/601 (56%), Gaps = 43/601 (7%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M+ T T +VVDPITRIEGH+R V + + + +A S +FRGLEIIL Sbjct: 1 MAESKPTPQSTF---TGPIVVDPITRIEGHLRIMVEVENGK-VKDAWSSSQLFRGLEIIL 56 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +GRDPRDA F +R CGVCT VHALAS ++DA+ + +P NA ++RN+++A+ + HDHL Sbjct: 57 KGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHL 116 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRLKKFVEGGQL 179 VHFY L +DW+DV ALKADP K ++LA S++ P +S VQ++LK FVE GQL Sbjct: 117 VHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQL 176 Query: 180 GIFRNGYW--GHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM 237 GIF N Y+ GH Y LPPE +L+ AHYLEAL Q + A+ GGKNPH + V G Sbjct: 177 GIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGG 236 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 + + L ++ F+N IPD LA+ F K W IG Sbjct: 237 CSN--------YQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG---G 285 Query: 298 DKCVLSYGAF--PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR 355 L++G F D + + + P G + D VD VD + E V ++WY Sbjct: 286 TSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGK---VDNVDLGAIYEDVKYSWYA 342 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLAR 415 D G+HP+DG+TDP Y +L++++ YSW+KAPR++G AMEVGPLAR Sbjct: 343 PGGD--GKHPYDGVTDPKYT------------KLDDKDHYSWMKAPRYKGKAMEVGPLAR 388 Query: 416 TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 T IAY KG + VD ++ L++P + + STLGR R E ++ + ++ Sbjct: 389 TFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMAD 448 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 + N A P E +GVG +APRGAL HW I+ KID +Q VVP+TWN Sbjct: 449 SGAKDNTLCA------KWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWN 502 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 PR +G E AL+ T +A P++P+EILRT+H+FDPC+AC HV+ + +E++ + Sbjct: 503 LGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVHVIEPETNEILKFK 562 Query: 596 V 596 V Sbjct: 563 V 563 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 598 bits (1542), Expect = e-169, Method: Composition-based stats. Identities = 226/589 (38%), Positives = 322/589 (54%), Gaps = 31/589 (5%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+VVDPITRIEGH+R EV +++ NVI +A S T++RGLE IL+GRDPRDA F +RI Sbjct: 2 TKRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT H A + A+E+A+GIK P NA +IR++M +L HDH VHFY L G+DW D+ Sbjct: 62 CGVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDIT 121 Query: 136 DALKADPRKTSELAQSLSSWP-KSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 ALKADP S+LA S P + VQ R+ +F G LG F N YWGH Y+ Sbjct: 122 SALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYRF 181 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVN 253 PE NL+ +HYL+AL+ QR ++ A++G K PHP + VGG+ + A++ Sbjct: 182 SPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTS--------VMDALD 233 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 RL + ADF+N D + + K + G + K SY P + Sbjct: 234 PSRLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYSYQEIPLNKTE 293 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + + G V++GD + V ++ + E HAWY+ + HP+DG DP Sbjct: 294 W-----MYSTGIVMDGD---ITKVHEINEDLITEEATHAWYK---ENKALHPYDGQQDPN 342 Query: 374 YNPGDV------KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 Y G+ + ++E+ +Y+WIKAPR+ G +EVGPLA ++ + Sbjct: 343 YTGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRI 402 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + + + LPL+ + +TLGR R E + +A F+ L+ NLK + Sbjct: 403 EKVATQFLKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANLKVDQSTYTTY 462 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + + E +G PRG L HW I++G I YQ VVP+TWNA PRD G G Sbjct: 463 KIDK----NKEYKGRYMGTVPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGP 518 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 YEA+L+ K+ QPLEI+R +HSFDPC+AC+ HV+ G+EL +V Sbjct: 519 YEASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 597 bits (1538), Expect = e-169, Method: Composition-based stats. Identities = 233/588 (39%), Positives = 325/588 (55%), Gaps = 29/588 (4%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 T + +++V+DP+TRIEGH+R E+ +++ N +T A + G +FRG+E IL+GRDPRD Sbjct: 2 TESTKKQKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTGL 61 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVCT H AS+ A+E+A I P NA I+RN++ L+ DHLVH+Y L +D Sbjct: 62 IAQRICGVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSLD 121 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKS-SPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 ++DV AL+AD K SE+A P + S G VQ +L FV G+LG+F NGYWGH Sbjct: 122 YVDVTSALEADCHKASEIAHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWGH 181 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGA 248 QYKL PE NL+ HYLEAL QRE+ K A+FGGK PHP N +VGG+ +++ Sbjct: 182 AQYKLSPEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSVMDM----- 236 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 +N +RLN II T +F+ +PD + + G G + G + Sbjct: 237 ---LNPQRLNDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEGRGHGNFMCSGGY- 292 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + L G + DF+ + D D Q+ E +WY D+ P+D Sbjct: 293 ----QLSDDEPLFASGIIWGHDFSKI---DAFDDTQITEEASRSWY---ADEAPTRPYDE 342 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 T+P Y + G+ L + +YSWIKAPR++G MEVGP AR +I Y K Sbjct: 343 TTEPDYTDMNADGT------LKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYVKKAKTVR 396 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + M L L S +GR RA EA+ + F +L+ N+K + T + Sbjct: 397 PYMQHFMDDTGLELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDETTWTKY 456 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 +E P E +G E PRG L H+ I + K+ YQ VVPTTWNASP+D +G G Y Sbjct: 457 DFE--ALPLETKGRAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPY 514 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E A++ K+A P+QPLE+LR +HSFDPCLAC+ HV+ G L +V Sbjct: 515 EEAIVGLKLADPQQPLEVLRAVHSFDPCLACAVHVIDAQGQTLSEHRV 562 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 593 bits (1529), Expect = e-168, Method: Composition-based stats. Identities = 229/590 (38%), Positives = 329/590 (55%), Gaps = 48/590 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 ++VDP+TRIEGH+R E + + +I S +FRGLEIIL+GRDPRDA F +R CGV Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKIIDV-RSSSQLFRGLEIILKGRDPRDAQHFTQRSCGV 76 Query: 79 CTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 CT HALASV +++A+G+ +P NA IIRN++LA + HDHLVHFY L +D++DV Sbjct: 77 CTYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSA 136 Query: 137 ALKADPRKTSELAQSLSSWPK------SSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--G 188 L AD K +E+A ++ + SS ++ +K V+ G+LGIF N Y+ G Sbjct: 137 CLNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGG 196 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESG 247 HP Y LPPE NL+ HYL+AL Q + + AV+G KNPH + ++GG+ C Sbjct: 197 HPAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVTC-------- 248 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + + +N ++ DF+ + IPD LA+ F K W+ IG +S G F Sbjct: 249 -YEGLTDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIG---GTTNFMSCGEF 304 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 P + S + G ++N N+ VD +DP ++ E V H+WY+ D +HP++ Sbjct: 305 PVPGGETDLTSRYVKPGVIMN---RNLGQVDALDPSKIAEHVKHSWYK---DGAAQHPYN 358 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G+TDP Y L+++ +YSW+KAPR+ G A+EVGPLA L+ Y G Sbjct: 359 GVTDPMYTS------------LDDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEF 406 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 VD ++ AL + + STLGR R E K + + L N+ G+ Sbjct: 407 KTYVDFVLKALGVGPEALFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDIC-- 464 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + P +GVG+ APRGAL HW I+D KID +Q VVP+TWN PR G Sbjct: 465 ---KDWDMPASAQGVGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGP 521 Query: 548 YEAALM-NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E AL+ NT +A PE+P+EILRT+HS+DPC+AC HV+ + + ++ Sbjct: 522 LEEALLDNTPIADPERPVEILRTVHSYDPCIACGVHVIDNKTGNVKKFRI 571 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 552 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 188/587 (32%), Positives = 294/587 (50%), Gaps = 70/587 (11%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DPITRIEGH++ E + D + +A GT+FRG EI ++ RDPRDA +RIC Sbjct: 2 QKIVIDPITRIEGHLKIEATV-DGGEVKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRIC 60 Query: 77 GVCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 GVC H + ++ A G+ K+P+N I+RN++ + H+VHFY LA +D++DV Sbjct: 61 GVCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDV 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ---LGIFRNGYWGHPQ 191 + D V++ + + + G L F Y G Sbjct: 121 TEVADYDGTD----------------PELLKVKDFIARALAAGDMSMLAPFYPRYEG--D 162 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 Y+LP + AHY+EAL+ +R ++ A++ G+ PH +V G G Sbjct: 163 YRLPKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAG----------GVTSH 212 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 +++ ++ S + FI+NV +PD +A+ + + IG G + +LSYG F A Sbjct: 213 PSIDSISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDYFGIGVGCGN--LLSYGVFDLEA 270 Query: 312 N--DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 N + + L G V D L + DP ++ E + + W++ + +P + + Sbjct: 271 NGTNLATRQRLFTQGTVSASD----LTLHTFDPNKITEDIKYGWFK---GETNEYPLNEV 323 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 T+P + + E YSW+KAPR+ EVGPLAR ++ Y GD + Sbjct: 324 TEPDHT---------------KAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQK 368 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 V+ ++ + + STLGR RA E + A ++ + +L K G A E Sbjct: 369 MVNDTLAHFGAGPAALFSTLGRHAARALECKIVADEMVKWVMEL----KIGEPVCADYE- 423 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYE 549 P G+G EAPRGALGHW I + KI YQCVVP+TWN SP+D +G G E Sbjct: 424 -----IPESAEGMGLWEAPRGALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPVE 478 Query: 550 AALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 AL+ TK+ + P E++R + SFDPCLAC+ H++ G+E+ +V Sbjct: 479 QALIGTKVRDNDNPFELVRIVRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 204/578 (35%), Positives = 312/578 (53%), Gaps = 43/578 (7%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R V+DPITRIEGH+R E+ + + +++A G FRG+E++++ R P DA V+RICG Sbjct: 3 RSVIDPITRIEGHLRVEMEVTNGK-VSDAWVSGGCFRGMEMVVENRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA +S A E A GIK+ +NA IIRN++ + H H++ FY LA +D+++ L+A Sbjct: 62 VCPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH---PQYKL 194 LKADP +LAQ+ + S F ++ RL F + GQL IF ++ Y+L Sbjct: 122 LKADPADAYDLAQAAGTSMNS---DFVALKERLANFADNGQLSIFSGNWFDAEDGTAYQL 178 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 PPE +L+ AHYLEAL Q + +I A+ GGK PH +V G + D Sbjct: 179 PPELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPTD---------- 228 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ++L+ ++++ D++ + MIPD LAI + G G +++G F + D+ Sbjct: 229 QKLDELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGR--YVAWGVF-EGPGDY 285 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 + M + G ++ L + V + E++ +WY+ D P+ +T+P Y Sbjct: 286 ASYTEQMANRYLPMGVIDDKLNLSDVQENLITEYMGRSWYK--GDATYTSPY-FVTEPEY 342 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + N ++RY+W+K P + G E G L+R L AY + VE VD + Sbjct: 343 T------------EYNVEDRYTWVKCPAYDGKPYEAGGLSRVLAAYKRNVPFVVEQVDGL 390 Query: 435 MSALNLP--LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 + AL P + QSTLGR R E + AG ++ + +L+ LK+G+ S EP Sbjct: 391 LEALGAPGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGD----SEYFREP 446 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 +T G GF EAPRGAL H +I+DGKI+ YQ ++PTTWN +P + G+ G E AL Sbjct: 447 STIT--GAGTGFWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQAL 504 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 + + E+P+ LRT+HSFDPC AC+ H+ + Sbjct: 505 IGNPVGDIEKPINALRTVHSFDPCTACAVHITEPATGK 542 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 197/580 (33%), Positives = 300/580 (51%), Gaps = 66/580 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRIEGH++ EV + + V+T+A S GTM+RG E +L+GRDPRDA ER CG Sbjct: 3 KVVIDPVTRIEGHLKVEVEVTN-GVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC G H AS A++ A G KVP +IRN+M+ +W HDH +HFY L+ +D++D+ Sbjct: 62 VCAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDIT-- 119 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 +++ + PG V++++ K + G Y PE Sbjct: 120 -------------AVAKYQGQDPGLLR-VKDKISKLIAAGDTAPLTPRYEPDAFCVNDPE 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + +HYL AL+ Q + K+ A+F GK PH + IV G G N+E + Sbjct: 166 LVTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAG----------GVTMLPNIEVV 215 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQF-NKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +S++ D++ N+ + D L G P ++ G G L+YG F D Sbjct: 216 EQFRSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGL---DDEG 272 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 K L G V++G+ +NV+P VD ++ E V HAWY+ ++ G HP+D T P Sbjct: 273 KDFLFKQGIVLDGNLSNVMP---VDQSKITEGVTHAWYK--DNPNGDHPYDSDTVP---- 323 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 L +++ YS++KAPR+ G +EVGPLAR L+ +G + +++ Sbjct: 324 -----------DLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQG-------LMDIIA 365 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 N+ + R RA E A ++ + ++L + G L TE W P P Sbjct: 366 KYNIKPGAV----ARHAARAFETVILAKEMINWVNQLEAEMGKG-LRIHDTEHWNP---P 417 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 +G+G TE PRGALGHW I+D + YQ VVPTTWN SP+D +G G E AL+ Sbjct: 418 ATGQGIGLTEVPRGALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVP 477 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + P+ I+R + S+DPCLAC+ H++ +E+ +V Sbjct: 478 IPDENNPINIVRVIRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 527 bits (1356), Expect = e-148, Method: Composition-based stats. Identities = 200/585 (34%), Positives = 307/585 (52%), Gaps = 52/585 (8%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R +DPITRIEGH+R E+ +ND ++T+A G FRG+E++++ R P+DA V+RICG Sbjct: 3 RTTIDPITRIEGHLRVEMEVND-GIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA A+ A E A GI +P++A IIRN++ + H H++ Y LA +D+++ L+A Sbjct: 62 VCPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ------ 191 L AD + LA ++ F +Q+RL +F + GQL IF ++ + Sbjct: 122 LNAD----TGLAYDVAEEYGLKNADFVSLQDRLARFADNGQLSIFSGNWFPTAEQYADGT 177 Query: 192 --YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 Y L PEA+L+ AHYLEAL+ Q +I AV GGK PH ++ G + D Sbjct: 178 NEYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGTMFVPTD----- 232 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 ++L+ ++ +I R +++ V +PD++A+G+F G G + ++G F Sbjct: 233 -----QKLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGC--RRYGAWGVF-- 283 Query: 310 IANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 F MP G + G N + V+ ++ E+V H+WY D PF+ Sbjct: 284 ERESFKMADRYMPSGVIELGPDGNY-QLSEVEESKITEYVGHSWYSGSED---LPPFEQG 339 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 +P Y + N +RY+W K R+ G +E+G +R L+AY +GD E Sbjct: 340 VNPEYT------------EYNTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIKE 387 Query: 430 SVDRMMSALNLP---LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 VD ++ AL LS ST+GR R E + A ++ + +L+ +K G+ + Sbjct: 388 HVDALLVALGGTPGDLSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYFT 447 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 + E G GF EAPRGAL H +++GKI YQ ++PTTWN +P DP G G Sbjct: 448 K------SDAVEGEGTGFWEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVHG 501 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSEL 591 E AL+ + E+P+ LRT+HSFDPC AC+ HV+ + Sbjct: 502 PMEQALIGVPVTDMEKPIHALRTVHSFDPCTACAVHVVEPKTGKK 546 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 191/567 (33%), Positives = 274/567 (48%), Gaps = 75/567 (13%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DP TRIEGH+ +N+ + + +A G M RG E ILQGR P DA V+RICGV Sbjct: 5 VKLDPFTRIEGHLAVSLNVQNNR-VKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRICGV 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H +ASV A E A GI++P+NA + RNIMLA+ + H+ HFY L+ +D+ID+ L Sbjct: 64 CPVSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDITAIL 123 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHPQYKLP 195 K + +QN +K + L F Y G +Y Sbjct: 124 ----------------DYKGGDAFLLAMQNWVKAELASKNLFPAAPFLPRYQG--RYLKD 165 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 + N+ +Y AL+ + ++ A+F GK PH IV G G V + Sbjct: 166 VDFNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPG----------GITEKVTTK 215 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 ++ +S + + FINN D LAI + IG + LS+GAF D Sbjct: 216 KIIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGN--FLSFGAFGDANL--- 270 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 EKS L+P GA++ G VD ++E V ++ +Y +D Sbjct: 271 EKSPLLPAGALLQGKLEE------VDDISIKEDV--SFSKYSSD---------------- 306 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 G + + + ++ YSWIKAPR+RG AMEVGPLAR ++A KG+ E+ + + Sbjct: 307 ----SGREKTVPEPHKSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAFL 362 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 +L L+ + S LGR + R E + K + + ++L Sbjct: 363 QKTDLSLTDLDSCLGRHIARFIELEVIIEKCEEWMEQLR----------PDQPTAVDFNI 412 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + G G EAPRGALGHW I KI Y+C+VPTTWN SP+D K G E +L+ T Sbjct: 413 PQQAEGRGMMEAPRGALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGT 472 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTH 582 +A PLE R + S+DPCLAC+ H Sbjct: 473 IVADKTNPLEAARIVRSYDPCLACAVH 499 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 189/582 (32%), Positives = 273/582 (46%), Gaps = 105/582 (18%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R++VVDP+TRIEGH++ EV ++ + +A S G +FRGLEIIL+GRDPRDA +RI Sbjct: 4 ARKIVVDPVTRIEGHLKIEVELDGNR-VHDAWSTGLLFRGLEIILKGRDPRDAQHITQRI 62 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGV H ++SV ++DA GI P N I+RN++ H++HFY LA +D++ Sbjct: 63 CGVUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKGP 122 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + F Y G Y+LP Sbjct: 123 ET------------------------------------------APFVPRYEG--DYRLP 138 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 P+ + HY++AL +R+ ++ A+FG K PH + G G V E Sbjct: 139 PDVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPG----------GVTSTVTAE 188 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDI-ANDF 314 ++ + FI+NV IPD LA+ + W +G G K +LSYGA+P D Sbjct: 189 QVEAYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVG--TKNLLSYGAYPLTDEKDP 246 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 K+L G G F + ++E V H+WY G+HPF+G T P Sbjct: 247 NGKNLFFTRGVYAGGSFMP------MSADHIREHVTHSWYESKAG--GKHPFEGETVPA- 297 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 ++++ YSWIKAPR+ + EVG LAR + D + D+ Sbjct: 298 --------------VDKRGGYSWIKAPRYESYSCEVGALARQWVG---RDPQVIGLGDK- 339 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 S +GR RA E A + + ++L + P Sbjct: 340 ----------AFSVMGRHFARAIETTKVAHAMLGWLEEL----------EPGQPAFRPHD 379 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P + +G G TEAPRGALGHW I + I YQ VVP+TWN PRD KG G E AL+ Sbjct: 380 VPEKAKGFGLTEAPRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALVG 439 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 T++A P+ P+E++R + +FDPC+AC+ HV+ G +S V Sbjct: 440 TEVADPDNPIELVRIVRAFDPCIACAVHVMEVRGGSGVSRFV 481 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 170/595 (28%), Positives = 266/595 (44%), Gaps = 88/595 (14%) Query: 7 TQGYTINNAGR-RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 +Q T G+ ++ +DP+TR+EGH++ EV + D V+ +A G MFRG E IL+GRDP Sbjct: 2 SQAATPAADGKVKISIDPLTRVEGHLKIEVEVKDGKVV-DAKCSGGMFRGFEQILRGRDP 60 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 RD+ V+RICGVC H ASV A +DA G+KV N I RN++ + H++HFY Sbjct: 61 RDSSQIVQRICGVCPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYH 120 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 LA +D++ D PR + + +R+K + Sbjct: 121 LAALDYVKGPDVSPFVPRYANADL----------------LTDRIKDGAKAD-------- 156 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDE 245 N G YL+AL+ +R ++ A+FGG+ PH +V G Sbjct: 157 -----------ATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVG--------- 196 Query: 246 SGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYG 305 GA +++ + F+ +P +G E G G + V+++G Sbjct: 197 -GATEIPTADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKN--VIAFG 253 Query: 306 AFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHP 365 FP+ D K+ L+ G I+G D + V+E+V H+++ + G H Sbjct: 254 VFPE---DDDYKTFLLKPGVYIDGKDEE------FDSKLVKEYVGHSFFDHSA-PGGLHY 303 Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDA 425 G T+P ++ YS++KAPR++ EVGPLAR + + Sbjct: 304 SVGETNP---------------NPDKPGAYSFVKAPRYKDKPCEVGPLARMWVQNPELSP 348 Query: 426 ATVESVDRMMSALNLPLSGI----QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 + + + + S +GR + A E A ++ + ++ Sbjct: 349 VGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLVAEETWLTAVAVEKWLKQV-------- 400 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 E + + P G GFTEAPRGAL H+ I+D KI+ YQ V T WNA+PRD Sbjct: 401 --QPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDD 458 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 GQ G E AL+ + + P+ + R + S+DP L C+ HVL + E V + Sbjct: 459 MGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPULGCAVHVLHAETGEEHVVNI 513 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 185/566 (32%), Positives = 277/566 (48%), Gaps = 64/566 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + P+TRIEGH+ + + + V+ +A G MFRG EI+L+GRDP D+ +RICG Sbjct: 2 KIDIGPVTRIEGHLNVQTTVEN-GVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA+AS YA EDA + VP N I+ N++ +DHL+HFYQL +D++D+ Sbjct: 61 VCPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAV 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 L+ R + + K++ L Y + + Sbjct: 121 LEYTGR---------DPELSKVRDWVKAEVDSGKRYPAAPFLPRLDGKYLDNR------D 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANL +YL A++ +++ + A+FGG+ PH I G G +++ + Sbjct: 166 ANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPG----------GCTQNASIDLI 215 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 QS+I DFI+ IPD LA+ + EIG S LSYG P E+ Sbjct: 216 LAYQSLIREVRDFIHLKYIPDVLAVAGAFPEYWEIGQ--SKGGFLSYGHMPLGPARNSER 273 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L+ G ++ + V+ ++++ V+HA Y ++ R D P Sbjct: 274 --LLAPGVLLG------DQLSAVELGKIRQDVNHALYSSASNLTVR-------DAAIVPQ 318 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG-DAATVESVDRMMS 436 KG E YSWI APR+ G +EVGP AR ++ Y +G + + V+R Sbjct: 319 PDKG----------GEAYSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFAG 368 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 N+ + + S LGR L RA A A + ++L + A + + +P P Sbjct: 369 HANISANQLNSVLGRHLSRAILAAVIADFVLAESERL-------DPAAPTMAELDP---P 418 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 G G TEA RGAL H+ I + KI Y+CVVPTTWNASPRD +G GA E+AL+ T+ Sbjct: 419 ASGEGFGITEASRGALLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGTR 478 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTH 582 + PE+ +E R + SFDPCLAC+ H Sbjct: 479 VQNPEEQIESKRIVRSFDPCLACAVH 504 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 166/563 (29%), Positives = 255/563 (45%), Gaps = 97/563 (17%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + +DP+TRIEGH++ EV + + V+ +A G M+RG E IL+GRDPRDA V+RICG Sbjct: 18 TIAIDPVTRIEGHLKAEVVVENGKVV-DARLSGGMYRGFETILRGRDPRDASQIVQRICG 76 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC H+ ASV A+++A G KVP+N I RN++ + H++HFY L+ D++ Sbjct: 77 VCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFV----- 131 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 +G F + +L E Sbjct: 132 -------------------------------------QGPDTAPFVPR-FPKSDLRLSKE 153 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 N G Y+EAL+ +R ++ A+FGG+ PH V G GA E+L Sbjct: 154 LNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVG----------GATEIPTKEKL 203 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 + + DF+ +P IG K ++G G K L GAFP ++ G+K Sbjct: 204 VEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGF--KAALCVGAFPL--DNSGKK 259 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L MP G G DP +++E+V ++W+ + G + +G T P Sbjct: 260 HLFMP-GVYAKGKDMP------FDPSKIKEYVKYSWF--AEETTGLNYKEGKTIPA---- 306 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM-- 435 ++ YS++KAPR+ G ++EVGPLAR + + + + + Sbjct: 307 -----------PDKAGAYSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGI 355 Query: 436 ---SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 +L S +GR + RA E + G ++ + + +K G Sbjct: 356 SAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKE----IKAGEDTVVMP----- 406 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P G GFTEAPRG+L H+ ++D KID YQ V + WN +PRD GQ GA E AL Sbjct: 407 -AVPASAEGTGFTEAPRGSLLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAVEEAL 465 Query: 553 MNTKMAIPEQPLEILRTLHSFDP 575 + + + P+ + R + +FDP Sbjct: 466 IGIPVDDIQNPVNVARLIRAFDP 488 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 458 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 155/580 (26%), Positives = 259/580 (44%), Gaps = 110/580 (18%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V++P+TRI G M +V I + V+ +A + G +FRG E +L GR P DA F +RIC Sbjct: 3 KKIVINPLTRISGFMEIDVYIENNRVV-DAKTKGHLFRGFEQMLVGRSPFDAVYFTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H++AS A+EDA+ I + +R+I+ + +H+ HFYQ D++ + Sbjct: 62 GICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLES 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + H ++LP Sbjct: 122 NSLFNT---------------------------------------------DHHDFRLPK 136 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + N HY E+L++ R ++ A+ GGK PH + + G G E Sbjct: 137 QINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIG----------GITTQATAEN 186 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + + + + + FIN+ MIPDA I + + +G G + +L+YGAF N++ + Sbjct: 187 VVKLDDSLQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGN--LLTYGAF----NNYKD 240 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 L + + NN L V+ + ++E +D++WY+ N P + +P Sbjct: 241 LGTLYVDPLISKMNANNNL-VEPFQEKNIKEKIDYSWYKASN--AAYRPDSEMAEP---- 293 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 ++ YSW+KAPR+ G EVGPLAR +++ Sbjct: 294 ----------DMEMNEKAYSWVKAPRYEGLPFEVGPLARLILSG---------------- 327 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 S + R L RA EA+ ++ ++ N+ + + P Sbjct: 328 ----EYQNGISAMDRTLARALEAKKICEIMKELLHSVIPNV----------DLQKAYEIP 373 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + G G + RGALGHW + + KI YQ + P+TW+ S +D G G E AL+ T Sbjct: 374 EQASGRGLVDTIRGALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGTP 433 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + P P E+ R L SFDPC++C+THV G ++ +++V Sbjct: 434 INDPNNPAEVGRILRSFDPCMSCATHVYSP-GKQMKTIKV 472 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 437 bits (1123), Expect = e-121, Method: Composition-based stats. Identities = 156/582 (26%), Positives = 251/582 (43%), Gaps = 115/582 (19%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + +DPITRI G + +V + D ++ + G +FRG E +L+GR P D+ F ERI Sbjct: 2 GKIITIDPITRISGFLEIKVKVEDNIIVDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ HA AS A+E+A+ I N IR++M + +HL FY ++++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + P++ S ++LP Sbjct: 121 NIRPIYPQEYS--------------------------------------------DFRLP 136 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + N +HY E + + R + AV GGK PH + I VGG+ I+ Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNID-----------S 185 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 +L +QSI+ F+N M+ D I Q+ + +G + +S+G F + Sbjct: 186 YKLTKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGN--FMSFGVFDKYKDK- 242 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 + G +IN N D ++ E + +AWY +D + +P I + Y Sbjct: 243 --NISYVKPGVIINNKLEN------FDRDKITENIRYAWY--VSDTIIENP---IMNNEY 289 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 L ++ YS++KAPR+ MEVGPLAR IA Sbjct: 290 T-----------VDLKKEGAYSFVKAPRYADLPMEVGPLARLKIAG-------------- 324 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 +G S++ R + R E + L +K+ N Sbjct: 325 ------EYTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNN----------QSAYN 368 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P G G + RGAL H+ I + I Y + PT WN SP+D KG G E +L+ Sbjct: 369 IPEGAFGEGLIDTTRGALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIG 428 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +K+ E+P+EI R + SFDPC++C+TH++ ++ +E + V+V Sbjct: 429 SKIDNIEKPVEIGRIIRSFDPCISCATHLVSNN-NEPVKVEV 469 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 171/577 (29%), Positives = 254/577 (44%), Gaps = 114/577 (19%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 G+++V++P TR G + EV + VI A T+FRG E+IL+ RDPRDA Sbjct: 5 TEKGQKIVINPTTRTLGASQVEVRVEAGRVIH-ARCGATVFRGFELILRDRDPRDAAYIT 63 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +RICG+C HA+A+ +A+ED G++ P N N++RN++ A +H+ HFY A D++ Sbjct: 64 QRICGICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYV 123 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 + P Y Sbjct: 124 RGPECRPLVPP--------------------------------------------PTTDY 139 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +LP N Y +A+D R+ +I A+ GGK PHP+ I+ G G+ V Sbjct: 140 RLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPG----------GSSVPV 189 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 + + SI+ F+ M+PD + + + EIG +D L++G FP Sbjct: 190 TAITVLNLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGAD--FLNFGLFPLDPE 247 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 G PG AVI+G ++ VD ++ E + Y + + HP G T P Sbjct: 248 ASGHH---FPGAAVIDGR------MEAVDSGEISEHLR---YTHFEGEQLAHPARGETRP 295 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 ++ YSW KAPR+RG A+E GPLA+ + +GD Sbjct: 296 ---------------NPDKPGGYSWCKAPRYRGRALEGGPLAQLWV---RGD-------- 329 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 S + R++ RA ++ AG ++ + T L+ G + Sbjct: 330 ---------YRRGVSVMDRLIARALISREVAGLMRKWL----TALRPGQPV------FNR 370 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P GVG T A RG LGHW + G+I YQ V PT WN SP D +G G E AL Sbjct: 371 YQVPESGTGVGLTGAMRGGLGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEAL 430 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGS 589 + T +A ++P+EI R LHSFDPC++C HV+ D Sbjct: 431 IGTPVADAKEPVEIGRVLHSFDPCMSCVAHVIVLDEP 467 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 430 bits (1105), Expect = e-119, Method: Composition-based stats. Identities = 174/494 (35%), Positives = 251/494 (50%), Gaps = 45/494 (9%) Query: 102 NANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP- 160 NA IR+++L+TL HDH+VHFY L GMDWIDV+ AL ADP K ++ A S+ P ++ Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIH 220 G VQ +++ V G LG F N YWG+P YK PE NL+G +HYL+AL+ QR + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 221 AVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 A++GGKNPHP IV GG+ C ++ ++ RL + A+F+ D Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDM--------LDPARLQEFKQKFQHVAEFVERAYYADL 172 Query: 280 LAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDL 339 + + ++ G + ++ + +D L G + N D ++ + Sbjct: 173 VMAAKAYATSPDVLGGCNVHTFMAAESILLNPDD-----HLFTDGVIRNCDLSHA---EN 224 Query: 340 VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDT-NIQQLNEQERYSWI 398 VDP ++E V HAWY Q HP+DG T P P + + NI +NE +YSW+ Sbjct: 225 VDPSLIEEDVTHAWYDAKQPQ---HPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWV 281 Query: 399 KAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHE 458 K+PR+ G +EVGPLA + Y +G+ V+ VD ++ LP + +TLGR R Sbjct: 282 KSPRYNGEPVEVGPLATIAVNYARGNKPVVDVVDEFLTKTGLPAQALFTTLGRTAARMLH 341 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP-TECRGVGFTEAPRGALGHWAA 517 A F+ ++ NL + +P P E +GVG EAP + Sbjct: 342 TTVIARHGLETFESMVANLNSDQTT-----YIKPTIDPDKEYKGVGILEAPLSS------ 390 Query: 518 IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 C P P D G+IG YEA+L+ K+A P +PLEILR +HSFDPC+ Sbjct: 391 ---------GC--PNNLERWPYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCM 439 Query: 578 ACSTHVLGDDGSEL 591 ACS HV+ G L Sbjct: 440 ACSVHVMDYKGQSL 453 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 180/568 (31%), Positives = 271/568 (47%), Gaps = 55/568 (9%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+V+DP++R+EGH++ E I D VIT A + G +FRGLE L G D R A +R+ Sbjct: 2 TTRIVIDPLSRVEGHLKIETTIKD-GVITEARAAGLLFRGLEKALIGYDARVAQQVTQRV 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC HA A+ A+E A+GI+ P N ++RN++ HD L+HFY L+ +D+ID+ Sbjct: 61 CGVCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIK 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 L+ R + + + W ++ + R ++ G F Y Sbjct: 121 KVLRY--RGSDPVLNRVRDWVQA--------ELRSERIFPG---APFLPRY-RDDDQSWD 166 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 +L+ +Y + ++ K+ A+FGGK PHP I G G + Sbjct: 167 QSDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHPVAIEAG----------GVTTRPTLG 216 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L ++++ R F+ D + + + + G G + +FP + G Sbjct: 217 MLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLL-----SFPFLPEADG 271 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 E L GGA + G++ ++ + E ++YR P P + Sbjct: 272 ENH-LFAGGARLAGEYRQ------LELDAISEDHTFSFYRQPEPS----PLAPLATHLLT 320 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P + + ++L+ +YSWI+APR+ G MEVG +AR + +YH + A E VDR Sbjct: 321 PLNRQEFQAENERLD--GKYSWIRAPRYHGEVMEVGAVARVINSYHH-NRAVKEEVDRTN 377 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 L L L+ S +GR L R A +L+ D+ +K+G L + E Sbjct: 378 RELGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQ----VKDGVLGFSELE------V 427 Query: 496 PTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P GVG TEA RGALGHW A +G I Y+ V+P+TWN SPRD G+ GA E L Sbjct: 428 PRNAVGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQG 487 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH 582 T++ PEQPLE R S DPC+ACS H Sbjct: 488 TRIKNPEQPLEAARIARSADPCIACSVH 515 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 420 bits (1079), Expect = e-116, Method: Composition-based stats. Identities = 175/576 (30%), Positives = 276/576 (47%), Gaps = 59/576 (10%) Query: 12 INNAG--RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 +N +G +R+ +DP++R+EGH++ E + D VIT A + G +FRGLE L G D R A Sbjct: 1 MNESGTSKRITIDPLSRVEGHLKIETRVED-GVITQARAAGLLFRGLEKALIGYDARVAQ 59 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 +R+CGVC HA A+ A+EDA+GI+ N ++RN++ HD L+HFYQL+ + Sbjct: 60 QVTQRVCGVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSAL 119 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 D+ID+ + LA ++ + + + R + G F Y Sbjct: 120 DFIDI----------EAVLAYKGGDPVLAAVRQWVEEEVRSSRIFPG---APFLPRY--R 164 Query: 190 PQYKLPPEAN-LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGA 248 +LP + + L+ +Y ++ K+ A+FGGK PHP I G G Sbjct: 165 HDDQLPGDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHPVAIEAG----------GV 214 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 + L ++++ R F+ D ++ + + + G G + + +FP Sbjct: 215 TTRPTLGMLAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGN-----FLSFP 269 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + G+ L GGA++NG+ ++ + E +A+YR + Sbjct: 270 FLPEADGDNH-LFAGGALLNGEHQP------LELDAINEDHTYAFYRQQSGTALPPLATS 322 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHK-GDAAT 427 P + + ++ + +YSW +APR+RG MEVG AR + +YH+ G+ A Sbjct: 323 RLTP------LDWQEFQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQGGNQAL 376 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 E VD L + ++ S +GR L R A G+L+ + + + Sbjct: 377 KELVDHTNRELGITVADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGV---------- 426 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 +E P RGVG TEA RGALGHW +DG I Y+ VVP+TWN P+D G+ G Sbjct: 427 LGFEEREVPRNARGVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPG 486 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 A E L+ T+++ PEQPLE R S DPC+ACS H Sbjct: 487 AVEKMLLGTRISNPEQPLEAARIARSADPCIACSVH 522 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 162/594 (27%), Positives = 247/594 (41%), Gaps = 111/594 (18%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 RR+ + + R+EG + E+ I + ++T+A GTM+RG E IL GR P DA A RI Sbjct: 2 SRRIKLQ-LNRVEGDLEIELEIKN-GIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ H ASV A+E I P NA +RNI L + + + D Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICLLSEEIQSDCRQTFLMFTPDLC--- 116 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 SS D Q+ + KF + Sbjct: 117 ---------------------HSSYSTLNDYQSIVAKFQD-------------------- 135 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 M Y +A+ F R+I++I A+FGG+ PH +++V G ++ ++ Sbjct: 136 -----MQGELYQDAIRFSRDIIEIVAIFGGQWPHSSYMVPGGVTSLPDRRKVINSLAQLQ 190 Query: 256 RLNLV---QSIITRTADF--------INNVMIPDALAIGQFNKPWSEIG---TGLSDKCV 301 R + + T AD+ +NN AI ++ ++G G + + Sbjct: 191 RYTQWFEHKILGTSLADWSRITSLAELNNFTQSSDSAIAILHRFCRDMGLDSVGSGSEKM 250 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDL-VDPQQVQEFVDHAWYRYPNDQ 360 +SYG+ D N +G +N L +D ++ E + +WY + Q Sbjct: 251 ISYGSLIDPENPQER--------IRSDGTYNYKLKKHAPLDESKITEDITSSWY-HDESQ 301 Query: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 RHP G+T P Y+P + E+YSW KAPR+ + ++ GPLA+ +A Sbjct: 302 TARHPMQGLTQPKYDP--------------DSEKYSWAKAPRYDKDVIQTGPLAQLAVAK 347 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 D ++ + + ST R R H + L+ L+ L Sbjct: 348 ---DPLILDMLAQ----------NGSSTWTRQFARIHRQASSLIILKDQLSSLLECLDAP 394 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 + E + GVG EA RG+LGHW I DGKI +Q + PT WNASPRD Sbjct: 395 TMIHCPLE---------DGEGVGMIEAARGSLGHWLKIEDGKIKNFQVITPTAWNASPRD 445 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 Q G E +L+ M ++P+EI + S DPCL C+ H+LG V Sbjct: 446 INQQPGHIEQSLIGLPMPDLDEPIEIGHVVRSHDPCLVCTVHLLGSGKKHRFGV 499 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 168/569 (29%), Positives = 241/569 (42%), Gaps = 117/569 (20%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 + P+TRI +R EV++ V+ +A +FRG+E++L GRD RDA FV+RICG+C Sbjct: 5 TLFPVTRIHEPIRVEVDVQGGRVV-DAWIGACLFRGVELMLTGRDVRDAPLFVQRICGIC 63 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 + HA+A+ A+ A ++ + N+++A + +HL HFY L D++ D+ Sbjct: 64 SSAHAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGPDSAP 123 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 PR ++LP + N Sbjct: 124 FFPRTKG--------------------------------------------DFRLPKKLN 139 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 F H ALD ++ A+FG K PH I+ +G N ERL Sbjct: 140 DELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMP----------TGVTERANAERLMA 189 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 +I+ +++ V + D L I ++ + + IG G LSYG FP+ G Sbjct: 190 YGAILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGH--FLSYGGFPEP----GTGQP 243 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 P G V NG L D ++ E + H WY+ +DQ RHP +G T Sbjct: 244 AFPVGLVENGGLPQPL-----DLTRITEHIHHGWYQ--DDQESRHPIEGRT--------- 287 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA--YHKGDAATVESVDRMMSA 437 ++ YSW KAPR+ E GPLAR I+ Y +G Sbjct: 288 ------AAAPDKSAAYSWCKAPRYGRLPAETGPLARAWISGEYRRGI------------- 328 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 S + R++ RA EA Q + ++ P T P Sbjct: 329 ---------SVMDRLIARAREALKICRLAQEWLARI----------APGAPTLAPYTLPP 369 Query: 498 ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKM 557 GVG EA RGALGHW +GKI YQ V PT WN SPRD GQ G E AL+ T + Sbjct: 370 RGEGVGLLEAMRGALGHWLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPI 429 Query: 558 AIPEQPLEILRTLHSFDPCLACSTHVLGD 586 A PE +E+ R + SFDPC C+ H++ Sbjct: 430 AAPESLIEVGRVIRSFDPCFTCAAHLISA 458 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 164/570 (28%), Positives = 271/570 (47%), Gaps = 67/570 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ +DP+TRIEGH++ E I D VI A M+RG+E L+G D A +R CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIEDS-VIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 C HA A+ AIE+A+ I++ N ++RN+++ D+++HFY L+ +D+I++ D Sbjct: 61 CCPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDI 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP---QYKL 194 L + F ++ + E +F N + Y Sbjct: 121 LNYN------------------GNDFDMLELKKYVLKEISSKKVFPNPLFSQKYKNAYIK 162 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 + N+ HYL++ + +++ ++ +FG K+ H I G G Sbjct: 163 NKDLNITLINHYLKSFEAMKKMSEMVKIFGSKSTHMVTIEAG----------GVTTRPTA 212 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ERL S+ + FI + IPD L + + K + +IG G+ + + F + N Sbjct: 213 ERLVKYISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDN-----FLTFDTLLNLD 267 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 G S L GG + ++ + ++P + E+ ++A+Y+ + G P + Sbjct: 268 G--SYLFTGGFSKDFEYE-----EGIEPYNIIEYNNYAYYK---ENGGYKPLELTELTPL 317 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG-DAATVESVDR 433 + K + T +YSW KAPR++G+ +EVGP A + Y +G D + VD+ Sbjct: 318 TFDEFKQNHT---------KYSWSKAPRYKGHVVEVGPAAIVINNYLRGKDEKLISLVDK 368 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 L + + S +GR L RA ++ K+ D LM ++ G L +K Sbjct: 369 FNRELGIDIKDYNSVMGRHLSRAIISKLIIDKIIE--DSLM--VEEGKLGFIQLKKP--- 421 Query: 494 TWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P+ +G+G TEA RGAL H+ I +G I Y+ +VPTTWN SP+D + GA E+ L Sbjct: 422 --PSNVKGIGLTEATRGALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESML 479 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + T++ P+EI R + S DPCLAC+ H Sbjct: 480 IGTEIRDINNPVEIARIIRSTDPCLACAVH 509 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 152/576 (26%), Positives = 249/576 (43%), Gaps = 112/576 (19%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRI G ++ EV++ + ++ +A S G+ FRG E + QGR P D RICG Sbjct: 3 KIVIDPVTRISGLLKIEVDVENNKIV-DAKSTGSQFRGFEKMFQGRPPLDIIRLAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ HA+A+ A+E+A+ I N +IR+I + +HL Y A D++ + + Sbjct: 62 ICSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITAS 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 ++++G Y+LP + Sbjct: 122 NP-----------------------------------------LYKDGTDKELDYRLPED 140 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMER 256 YLEA+ + RE + AV GK PH + I VGG+ I++ E + Sbjct: 141 ITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEKES-------- 192 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 V+ IT +FI N ++ D I Q+ + +G G + ++ +G + +D+ Sbjct: 193 ---VKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGN--LMDFGLY----SDYKA 243 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 A+ING N +D + E V +++ P V Sbjct: 244 PIKYTEASAMINGKKEN------IDVNNITENVKYSYLDIPGGMV--------------- 282 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 S T +Q+ YSW+ A R++ +ME GPLAR ++ + + Sbjct: 283 -MPGVSSTPEPNPYKQDAYSWVDAARYKNYSMEGGPLARQILNGYYENKI---------- 331 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 S + RIL R E+ + D + L A E+W+ P Sbjct: 332 ----------SAMDRILARVLESVKICESIIGLIDLM-------KLGQAVQEEWQ---IP 371 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 ++ G+G APRGALGHW +I + ++ Y + P+ WN SP D G EAAL+ T+ Sbjct: 372 SKVNGIGLIGAPRGALGHWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTE 431 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELI 592 + + P+EI R + SFDPC C+ HV D ++ Sbjct: 432 INDMKNPVEIGRIVRSFDPCSNCAAHVTSDRYDPIV 467 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 161/580 (27%), Positives = 249/580 (42%), Gaps = 119/580 (20%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + V+ P TRI M E + + VI +A T++RG E IL+GR D + +RICG Sbjct: 17 KKVIFPFTRIHNPMLVEAYLEN-GVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRICG 75 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ VHA+A+ +A+E A+G+ VP N I RN+++ + + +H+ HFY ++ D+ Sbjct: 76 ICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDY------ 129 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 +G + F G + E Sbjct: 130 ------------------------------------FKGPDIPPFTPHLEG--DIRFNTE 151 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 N HY +A++ R+ VFGGK PH + IV G G V+ +++ Sbjct: 152 ENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPG----------GCTMHVDADKI 201 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 N + + + +FINN MIPD + + + +G G + LS G F + Sbjct: 202 NRFRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKG--NGNFLSVGGFTQP-----DG 254 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L P G V+ D + + E V AWY+ HP+ G T+P Sbjct: 255 GTLFPHGVVLEDKHQP------FDDRLILEEVTTAWYK---PTPPAHPWQGTTEP----- 300 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 N+ + Y+W+KAPR++G+A+EVGPLAR +IA K Sbjct: 301 ----------DKNQPQGYTWVKAPRYQGHALEVGPLARAVIAKEK--------------- 335 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 TLGR R E + A + ++L+ + N Sbjct: 336 -----IIGYGTLGRHWSRVMETKKIAEAAMIWLERLVPGAETLNTKVQQ----------E 380 Query: 498 ECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKM 557 G+G+ EA RG LGHW I G++ YQ + P+TWN S RD G E ++ + Sbjct: 381 SGMGIGYVEAMRGTLGHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLTI 440 Query: 558 AIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 PE E R + SFDPC +CS H++ DG +L ++ +R Sbjct: 441 KHPELK-EAGRVIRSFDPCFSCSVHLI--DGEQLRTLDIR 477 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 171/638 (26%), Positives = 272/638 (42%), Gaps = 117/638 (18%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ VDP+TRIEGH R +N++ VIT+A S G RG E +LQ +DPRDA +RICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 78 VCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 VC H +A+ A++D G+ +VP + ++RN+ A + H H Y L G D Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDL---- 118 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A+P LA+ + DV N + K ++G + Y+L Sbjct: 119 ----ANPAYRDILAK------------YGDVGNAVWKELQGRFAPLI---------YQLD 153 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + G ++ ++F+R + + ++ K PHP VGG+ + + + G + + Sbjct: 154 GTSYPAGSSYLGSIVEFRR-LHEAISLIASKMPHPVLQHVGGVVYSPTVADIGQILSYIT 212 Query: 255 ERLNLVQSIITRTAD--FINNVM------------------------------------- 275 + + V++ + +I N Sbjct: 213 KTMEFVEAFTLGVSPDIWIENTYRASSPQKAANFVLNHLQELLNKSLDNKDFSHSAGWGD 272 Query: 276 IPDALAIGQFNKPWSEIGTGLSDKC-------------VLSYGAFPDIANDFGEKSLLMP 322 +P A G +G +S K LSYG F N G Sbjct: 273 VPLFAAFGSELIGEKLLGLPISMKMDLAGTYKDPGKIGFLSYGVFFKPENGNGYDPTSPA 332 Query: 323 GG-AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKG 381 + +G N ++ D +++ E ++H++Y +D R P++G+T P NP ++ Sbjct: 333 DSRVISSGYMNGYFKLEKFDYKKISESINHSFY--IDDVKDRPPWNGVTVPEGNPENIDY 390 Query: 382 SDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP 441 + + + RYSW KAP + G EVGPLAR +I G+ V P Sbjct: 391 TKGS------KSRYSWTKAPHYDGIPCEVGPLARMIIM---GEPLVTGLVKTFQDNGYYP 441 Query: 442 LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRG 501 ++ R++ R E +L + + +++ G T+ + G Sbjct: 442 VNNY----TRMIARMQEILVVVPELTKWLTQ---DIQAGGKVAVHTDL----SMAKSSTG 490 Query: 502 VGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 +G EAPRGALGHW A D + LYQ VVP+TWN +PR+ + E AL+ TK++ Sbjct: 491 MGLWEAPRGALGHWVATGPDSMVTLYQAVVPSTWNLAPRNSQEIPSPVEQALIGTKISAA 550 Query: 561 E--------QPLEILRTLHSFDPCLACSTHVLGDDGSE 590 E PL IL T S+DPCLAC+ H + G Sbjct: 551 ENALGVDYSNPLGILHTARSYDPCLACAVHTIDKTGKH 588 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 176/641 (27%), Positives = 251/641 (39%), Gaps = 152/641 (23%) Query: 18 RLVVDPITRIEGHMRCEVNIN-------DQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+V+DP+TRIEGH+R E++ + +V+ A GT+FRG E IL+GRDPRDAW Sbjct: 6 RIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRDAWI 65 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC HA AS+ AIE A + A +IRN++ + +DH++H Y L G Sbjct: 66 ITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILLGP- 124 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 EL P P + ++ Sbjct: 125 ----------------ELGVVCKYPPMVPPALGKEGVSK--------------------- 147 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNP-HPNWIVGGMPCAINIDESGAV 249 L + Y+ AL+ QR+ +I A++GGK P H + GGM D + Sbjct: 148 ---------LGIGSSYVGALEIQRKANEIVAIWGGKFPHHQSEYPGGMAVRPTEDRIASS 198 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI------GTGLSDKCVLS 303 A E V + DF N ++ +G+ +I G S LS Sbjct: 199 LARMFEIWRWVAETM--VKDFYN--LLEANEKVGEAVSSLLDINFRGLQDVGASTGNFLS 254 Query: 304 YGAFPDIANDFGEKSLLMPGG-----AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN 358 YG FPD N S+L + G ++ +D ++ E+V ++WY + Sbjct: 255 YGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDGSSKP--LDISKIAEYVRYSWY---D 309 Query: 359 DQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 ++ G +P K D N+ E YSW+KAPR+ G EVGPLAR L Sbjct: 310 NESGLNP--------------KDEDAPKPDKNKSEAYSWLKAPRYDGKVYEVGPLARMLN 355 Query: 419 AYHK--GDAATVESVDRMMSALNLP-LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 Y L+ S + R+ R + K+ + +L + Sbjct: 356 TYGTRWKIPIRNPVTGEDHGYFEYEVLNPKGSVIDRLAARVALTILTSQKVFEWLLELKS 415 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 + P E G G +APRG L H+ ++D KI YQCVVP+TWN Sbjct: 416 YTNQKVTNYRNV--------PKEGEGFGLWDAPRGGLLHYIKVKDHKIANYQCVVPSTWN 467 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQP-------------------------------- 563 SPRD GQ G E AL T + P Sbjct: 468 LSPRDDFGQPGPVETALEGTWLPNLSVPEICNAIYPEKDVDLSALGLGAMSWGDALAAAL 527 Query: 564 -------LEILR-------------TLHSFDPCLACSTHVL 584 L I R + SFDPC+AC+ HV+ Sbjct: 528 TPLGLAELNIERLNGQIYNTSLTLMVVRSFDPCIACAVHVV 568 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 153/580 (26%), Positives = 249/580 (42%), Gaps = 114/580 (19%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ P+TR+ G + E+ ++ ++ NA + GTMFRG E I++GR DA +RIC Sbjct: 3 KKITFSPVTRLSGLLSVEIVVDRGKIV-NARTRGTMFRGYEWIMRGRKVTDAVYMTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H Y +++ G + +NA +RNIM A + +H+ HFY D++ + Sbjct: 62 GICSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKM-- 119 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 P K L Q L+ +L Sbjct: 120 -----PEKPPFLGQDLNDL-------------------------------------RLNR 137 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E N +Y +A+ +E ++ A+FGGK P+ + V G G A ++ Sbjct: 138 EDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHG----------GVTVAPTADK 187 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +N +++I F+ MIPD I + + + +IG + ++S+G FP + Sbjct: 188 INQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGV--TPLRLISFGLFPFGPQNDD- 244 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 L P G +IN +F +L + ++E V +++Y ++ G + F+ +P Sbjct: 245 --YLWPPGVIINNEF------ELPQVEFIEEQVPYSYYEANDE--GENVFNQYPEPA--- 291 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 + E YS+IK ++G E GP AR +I +GD Sbjct: 292 ------------PFKPEAYSYIKTVLYKGQHFETGPYARGVI---RGD------------ 324 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 G ST+ RI+ R+ EA AG ++ + +L P Sbjct: 325 -----YRGRASTMDRIVARSLEALKLAGFIREWLTRL----------EPGPPPLNQNEEP 369 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + R V T A RGAL H A I ++ Y + PTTWN SPRD G G E AL+ T+ Sbjct: 370 VKDRAVATTGAMRGALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALIGTE 429 Query: 557 MAIPEQPLEIL-RTLHSFDPCLACSTHVLGDDGSELISVQ 595 + I+ R + SFDPC++C THV DG ++ Sbjct: 430 IPGGAMLETIVGRIIRSFDPCISCGTHVYSIDGKLQKKIE 469 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 163/590 (27%), Positives = 240/590 (40%), Gaps = 127/590 (21%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + +V + D V+ A + GTM+RG E IL GR PRDA R+CG+C H Sbjct: 10 LNRVEGDLSIQVTLED-GVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCGICGTAH 68 Query: 84 ALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPR 143 A V A+E A VP NA IRN+ L + L + D Sbjct: 69 LYAGVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPDLC----------- 117 Query: 144 KTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGF 203 P+ + F+ R + +G Sbjct: 118 -----------HPRYAGDVLFEPMMRAFEPFKG--------------------------- 139 Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 Y E L R +++I A FGG+ PH ++++ G G V + RL +S+ Sbjct: 140 DIYRETLAMTRRVLEIVAHFGGQWPHSSYMLPG----------GVVTPPDTRRLIACRSV 189 Query: 264 ITRTADFINNVMI------------------------PDALAIGQFNKPWSEIGT---GL 296 I + + +I P A+G + G G+ Sbjct: 190 IDQLQRWYEQRIIGAGLDEWMALGSADALFEWLERPGPANAALGLITRFLRSQGMHRLGI 249 Query: 297 SDKCVLSYGAFPDIAN-DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR 355 ++S+GA+ D + L+PGG + D V P+ DP V E V H+W++ Sbjct: 250 GTPHMISFGAWCDPQRWGPPYDAHLLPGGFY-DSDSGQVQPL---DPSLVTEHVRHSWFK 305 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLAR 415 + GRHP++G T P Y P + +RYSW KAPR+ G ++ GPLA Sbjct: 306 P--YEGGRHPYEGETVPDYQP--------------DSDRYSWAKAPRYGGRVVQTGPLAE 349 Query: 416 TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 LI GDA + L + R R + + + D+L Sbjct: 350 LLIG---GDALVRD----------LHATEGAGAWLRQFSRVRRIGFELRQARRMLDELGA 396 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 +L + + P T + +G G A RGALGHW I +G I YQ V PT WN Sbjct: 397 HLGEPHFVPPA-----PGTE-VDGQGCGLVMAARGALGHWVRIENGVIQKYQIVTPTAWN 450 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 ASPRD G G +E++L+ K+ P+ P+EI + S DPCL C+ H + Sbjct: 451 ASPRDSDGVPGHWESSLVGLKVQDPDDPIEIGHLIRSHDPCLVCTVHFVD 500 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 158/604 (26%), Positives = 275/604 (45%), Gaps = 62/604 (10%) Query: 17 RRLVVDPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R + DP+TR+ G + ++ ++ + + S T+FRG E+IL+GRDPRDA R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTNSMATLFRGYEVILKGRDPRDAAYISSRA 110 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC GVHA + AIE A+ IK P ++RNI+LA + +DH +H + LAG D+ + Sbjct: 111 CGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDYSE-- 168 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + ++ + + A + + K GY + Sbjct: 169 ELVRETNPELIDKAATTKAKNKDVHGY--------------------------DTVLDIM 202 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 + N + YLEAL R + + + GGK PHP +V GG+ +N V + + Sbjct: 203 KDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNASMLNEVYSRLI 262 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + + Q + D + + + +P + + TG+ D+ Y A + + + Sbjct: 263 KFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRPD-HYDAKFENCDTW 321 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 GE P G +++G+ +L ++EFV+H++Y + + +G+ Sbjct: 322 GEARWSTP-GVLVDGEVVTTKLTEL--NAGMEEFVEHSYYEKWDGHRFKEDPNGMPLSPN 378 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +P + K + + + ++RYSW AP W ME G R + A + ++ Sbjct: 379 HPWN-KETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMTAKAQKAPASKFLENT 437 Query: 435 MSALN-------LPLSGIQ-------STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 +++ LP ++ + R RA+ ++A + M +KNG Sbjct: 438 GTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAMENWMMAMDLIKNG 497 Query: 481 NLATASTEKWEPATWPTECR--GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASP 538 + + P P + G G A RG L H I +G I+ YQ + P+T NA+P Sbjct: 498 DTKVSV-----PYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIENYQIITPSTLNAAP 552 Query: 539 RDPKGQIGAYEAALMNTKM----AIPE--QPLEILRTLHSFDPCLACSTHVLGDDGSELI 592 R P G++G YE A++NT + PE + ++ILR + SFDPC+ C+TH++ D ++ Sbjct: 553 RTPWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCTTHIMAKDSDHMV 612 Query: 593 SVQV 596 + +V Sbjct: 613 TREV 616 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 151/606 (24%), Positives = 238/606 (39%), Gaps = 116/606 (19%) Query: 12 INNAGRRLVVD-PITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 +++ R ++ P+ R+EG + + I D IT A S GTM+RG E ++ GR D Sbjct: 1 MSSKSVRTSLNIPLNRVEGDLEIQAAIED-GCITEARSSGTMYRGFENMMTGRGTLDGLV 59 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 RICG+C+ H A+V A+ED G PDNA +RN+ L + + +D Sbjct: 60 ITPRICGICSLSHLTAAVEALEDISGTTPPDNARRLRNLALMVEMLQSDIRQSILMFMVD 119 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 + + Y HP Sbjct: 120 FTN-------------------------------------------------EGAYASHP 130 Query: 191 QYKLPPEAN-LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGA 248 L E + ++++ R ++++ A+ GG+ PH +++V GG+ ++ E Sbjct: 131 LSSLLMERYAPLSGTSAIQSIQETRRLLEVVAIIGGQWPHTSFMVPGGVTSSLGTPELLR 190 Query: 249 ---------------VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG 293 V ++ R + V S D++ + +G F + + G Sbjct: 191 CCMIIENFQSWYEKNVLGCSISRWHQVDS-AQAMLDWLEEIESHRQGDLGLFLRLAYDAG 249 Query: 294 ---TGLSDKCVLSYGAFP--DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEF 348 G L YG P + G++ +P G +G + DP + E Sbjct: 250 LDTMGQGPDGFLCYGGLPLPEHTEVKGQQGQFIPAGFARHG------SIQAFDPANIAED 303 Query: 349 VDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAM 408 + Y + V HP+D T+P + YSWIKAPR+ G+A+ Sbjct: 304 ISQCPYSQKHTSV--HPWDSSTNPD-------------PYAPRENSYSWIKAPRYNGHAV 348 Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 E GPLA L+ + D + + R S S L R L R + Sbjct: 349 ETGPLAEMLV---RRDPLFTDLIQRQGS----------SVLSRQLARLTRPARLIPAMLA 395 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQC 528 + +L +N + + + +G G +A RG LGHW I D KI+ YQ Sbjct: 396 WLRELSSN--------PQGKFYHRVKKIPDGQGAGLIQAVRGGLGHWVQIVDQKIEHYQI 447 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 + P+TWN SPRD GA+E AL T + PE P+E + SFDPCL C+ H L Sbjct: 448 ITPSTWNGSPRDGDNNPGAWEKALEGTFIKNPENPVEAGHVVRSFDPCLVCAVHSLHRGR 507 Query: 589 SELISV 594 + + V Sbjct: 508 KKGVLV 513 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 384 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 168/648 (25%), Positives = 253/648 (39%), Gaps = 156/648 (24%) Query: 18 RLVVDPITRIEGHMRCEVNINDQN-------VITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+ VDPITRIEGH+ + + N V+ A S +FRG EIIL+GRDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC H A++ A++ A + A +IRNI+ A + +DHL+H Y L G Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTYLLVGP- 121 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 E+ P P G+ GI + G Sbjct: 122 ----------------EIGVVCKYPPMVPPAL--------------GKEGIRKLG----- 146 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250 + Y++ +D QR+ +I A++GGK PH G G Sbjct: 147 -----------LGSSYVQCVDIQRKANEIVALWGGKFPHHMCEYPG----------GVTV 185 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE-------------IGTGLS 297 +R+ + T ++ +V + D +AI + N+ SE G S Sbjct: 186 KPTGDRIAQTLAKATELWEWCAHVALKDLIAIKERNEIVSERLSELLGIEHRAFADIGAS 245 Query: 298 DKCVLSYGAFPDIANDFGE------KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDH 351 LSYG FPD N + + G + N + + ++ E+V + Sbjct: 246 WGNYLSYGIFPDPENYDDWVKAQDGQPSFRKSAVIYAGSWQNG-ELKPFERDKIVEYVKY 304 Query: 352 AWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVG 411 + Y+ ++ G P+D +I ++ Y+W+KAPR+ G EVG Sbjct: 305 SRYK--DEISGMKPWDVEMTN------------DIVWKDKPNAYAWMKAPRYDGKVHEVG 350 Query: 412 PLARTLIAYHKG------DAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGK 465 PLAR ++ Y + T E+V +N S + R+ R +A A K Sbjct: 351 PLARMIVTYGLRWKFDVTNPITGETVSVDWEVMNPKG----SVIDRVASRVVQALLFATK 406 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDL 525 + + +L + + ++ P E G G EAPRGAL H+ I++ I Sbjct: 407 IMEWAVQLKDYASEYPIVSKDIPDYK--YVPNEGEGWGLWEAPRGALLHYTKIKNKVIAN 464 Query: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMN------------------------------- 554 Y CVVP+TWN PRD G G E AL Sbjct: 465 YACVVPSTWNLGPRDDFGNPGPVEKALEGCWLPKNLSVPDVCNALWPEEDVLGMKWGDAL 524 Query: 555 ----TKMAIPEQPLE-----------ILRTLHSFDPCLACSTHVLGDD 587 + + E LE L + SFDPC+AC H + + Sbjct: 525 AKAIAPLGLAELNLEPSNGAKYNTSLALAIVRSFDPCIACGVHTIELN 572 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 383 bits (984), Expect = e-105, Method: Composition-based stats. Identities = 151/569 (26%), Positives = 243/569 (42%), Gaps = 93/569 (16%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + L VDP+TRIEGHM E + ++ G M+RG E +L GR P D+ +RI Sbjct: 2 SKLLTVDPLTRIEGHMSVETAVE-SGKVSEVRIAGNMYRGFERMLLGRHPVDSARIAQRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC VH ++SV A+E GI P N I+R+++L DH++HFY L D++++ Sbjct: 61 CGVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLS 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A + + +++S W SS F +QNR + Y Sbjct: 121 SAAGYNGKDRD--LRNISDWLSSSGTAF--MQNRTEG------------------NYIKD 158 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 ++ +Y EA+ + + A+ G K P + ++ G G + + Sbjct: 159 KDSARRFALNYFEAIKIRSQAAGGLAILGAKVPFIHALMPG----------GITTEITTD 208 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L + TA+F+++ +PD + I Q + +IG +Y F + Sbjct: 209 ALMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGE--------AYNTFYAHQSFNS 260 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 K L G + +G+ + D +V+E + ++Y+ Sbjct: 261 AKGDLFTQGVIADGEKVD------FDYNKVKELIGSSYYKADGSP--------------- 299 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 N + YSWIKAPR+ G +E GP+AR + D + R+ Sbjct: 300 ------------DENAEGAYSWIKAPRYDGIPLETGPIARAAVG---NDEEFKSLLRRLG 344 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 S S +GR+L RAHE+ L ++ + G A + + P + Sbjct: 345 QK-----SIKSSVMGRLLARAHESVMLCNYLYGRTEEYVI----GKPAIRAVDLQAPVS- 394 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G+GF+ A RGAL H GK+ Y+ +VP+TWN P G++G E A++ T Sbjct: 395 ---GEGIGFSVAARGALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGT 450 Query: 556 KMAIP--EQPLEILRTLHSFDPCLACSTH 582 + +E+ R + SFDPC ACS H Sbjct: 451 PVNYGGVSGSIEVGRVIRSFDPCTACSIH 479 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 183/633 (28%), Positives = 257/633 (40%), Gaps = 127/633 (20%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+ +DP+TR+ +R + D IT+A S G ++RGLE +L GR P DA F +RICG Sbjct: 2 RITIDPVTRLSSGLRVTAELTD-GAITSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 +C+ HA ASV AIE A G +P +A ++RNI+ W +H+ H Y D + Sbjct: 61 MCSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPD---LA 117 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 D + D +S L L K V GGQ Sbjct: 118 DPVYGDALNSSSLGNLLWQELKERYA------------VSGGQA---------------- 149 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM--------------PCAI 241 Y EAL REI + V GG++P IV G C Sbjct: 150 ----------YGEALRCIREIGRAEGVLGGRSPCSPAIVPGGVTVRPARGDIGALETCLE 199 Query: 242 NID---ESGAVGAVNMERL--NLVQSIITRTADFINNVMIP------------------- 277 NID + VGA+ + N D+I ++ + Sbjct: 200 NIDGFLQKRLVGAMTIGEWLANTHDQDAGFGYDYIEHLPMGDLSASKGWGDLPLFMMFFS 259 Query: 278 -----DALAIGQFNKPWSEIGTGLSDKC--VLSYGAFPDIANDFG----------EKSLL 320 D L++ + G L D+ LSYG+F + ++ G + + Sbjct: 260 RMFARDVLSLPAYIGLDDAGGYPLDDQLIGFLSYGSFYRVRDESGRLKDGYGTVEDGAFE 319 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 MP G G N L D VDP + E V ++Y Y +++ P DG T P ++ Sbjct: 320 MPAGFTPGGMQNIYLAADRVDPNLIVEHVAASFYDYSEERLSEAPLDGETVPAGRASSIE 379 Query: 381 GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG-DAATVESVDRMMSALN 439 + RYS+IKAPR+ EVGPLAR + + A R MS N Sbjct: 380 L---------DGARYSFIKAPRYGRVPCEVGPLARQINSRESLIIDAMRRLYSRNMSVTN 430 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 P++ S R + R E + L + D L +++ + P + Sbjct: 431 YPMA---SVYTRTMARMQETLLISRMLHEWLDDL-------HVSDERQKYCVPVSVKPNR 480 Query: 500 RGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 G G EAPRGALGHW I +D KI YQ V PTTWNASPR + + G E AL+ Sbjct: 481 TGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTTWNASPRCSEQKSGPMELALLGCSTT 540 Query: 559 I-------PEQPLEILRTLHSFDPCLACSTHVL 584 P+ I + SFDPC AC+ H + Sbjct: 541 PSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 155/572 (27%), Positives = 232/572 (40%), Gaps = 89/572 (15%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N RR++ P R+EG + ++IN + A +FRG E IL+G+DPRDA Sbjct: 1 MNEETRRIIAGPFNRVEGDLEIRLDINGSA-VRAAYVNSPLFRGFEQILEGKDPRDALTI 59 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 V RICG+C+ ++A+ +A+ A GI P N I I+ A DHL HF+ D+ Sbjct: 60 VPRICGICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADF 119 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 + A ++ SE ++ + VQ+ + + G W H Sbjct: 120 ARAIYAGESWYGMASEQFRAKNGS---------SVQDAMNARASLLHIMGLLAGKWPHTL 170 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 P A +A D QR+ V++ A+ +WI + A ++ A+ Sbjct: 171 SVQPGGAT--------KAPD-QRDRVRLLAII---RQFKDWIEKSI-FAAPVERILAID- 216 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 ++E L + + + I D L +G GL K +SYGA+P Sbjct: 217 -SLESLRAYHAEAPQHGSLRLFLTICDTLELGS---------MGLGPKRFMSYGAYPM-- 264 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 + L+P G +NG VD + E + AW + HPF+G T Sbjct: 265 ----DGRHLLPPGIWLNGKIMP------VDTGLIAEDLTSAWM----NGETAHPFEGRTL 310 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 P + YSW KAPR G +EVG AR LIA H Sbjct: 311 PDETMAN---------------GYSWCKAPRMAGQTVEVGAFARMLIADHPL-------- 347 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 A L G + R++ R E ++ + ++ Sbjct: 348 -----AQGLLQDGAANVRARVVGRLFEIASTVLAMEQWAADIV----------PGEPAMV 392 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 P + G TEA RG+LGHW + G+I YQ + PTTWN SPRD G G E A Sbjct: 393 HGRIPQSAKVEGLTEAARGSLGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGPVEQA 452 Query: 552 LMNTKMAIPEQ-PLEILRTLHSFDPCLACSTH 582 L + E+ P+ + + SFDPC+ C+ H Sbjct: 453 LRGAPVRHGEETPVSVQHIVRSFDPCMVCTVH 484 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 158/592 (26%), Positives = 247/592 (41%), Gaps = 97/592 (16%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+++ P+ R+EG + + I D V+ +A S GTMFRG E +L GR D RIC Sbjct: 4 RKILDVPVNRVEGDLELRLEIADGMVV-DAWSAGTMFRGFERLLIGRGALDGLVVTPRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H + + A++ G KVPDN +RN+ L + + +D+ + Sbjct: 63 GICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFAN--P 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL-- 194 A +A P +++ + + + K VE + G W H + + Sbjct: 121 AYRAQPLYD----EAVRRYAPLAGEAVAEAVRETKHVVE---IIAIIGGQWPHSSFMVPG 173 Query: 195 -----PPEANLMGFAHYLEALD--FQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 PP A L+ H L+ ++R I+ ++D Sbjct: 174 GLSYAPPVAELLQCRHVLDGFRGWYERRIL----------------------GCSLDRWR 211 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG---TGLSDKCVLSY 304 AV ++ L L +S R +D +G + IG G LS Sbjct: 212 AVDSLEALDLWLEESAAHRDSD------------VGFLLRFGRTIGLDRLGGGHGNFLSC 259 Query: 305 GAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRH 364 G+ A GG ++ F V+ DP + E V +WY + GRH Sbjct: 260 GSLDLPAETAARGV----GGHLVPSGFARGAVVEGFDPAAIAEHVAASWY--AAYEGGRH 313 Query: 365 PFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD 424 P +G T+P+ + E RYSW+KA R+ G E GP A ++A GD Sbjct: 314 PAEGETEPYASG-------------EEGRRYSWVKAARYLGTPAETGPFAERIVA---GD 357 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 + + R + L R L R + + +++ + + A Sbjct: 358 PLFTDLLRR----------QGPNALARELARLTRPATLLPAMALWLGEVIASGGHDIYA- 406 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 +P P + G+G +A RGALGHW AI+DG+I+ YQ + PT WN SPRD G Sbjct: 407 ------DPGPIP-DGAGIGMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSGGV 459 Query: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 G +E AL+ T +A + P+E+ + SFDPCL CS H + G L V++ Sbjct: 460 RGPWEEALIGTPVADADNPVEVGHVIRSFDPCLVCSVHTVR-KGRSLGRVRL 510 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 157/613 (25%), Positives = 241/613 (39%), Gaps = 114/613 (18%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 GR L + P+ R+EG + V I D V+T+A + +MFRG EIIL+G+DP+ R Sbjct: 12 TGRDLRISPLGRVEGDLDLRVTIRD-GVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPR 70 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICG+C G H +VYA++ A ++P NA +IRNI A FY L +D + Sbjct: 71 ICGICGGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDLTNK 130 Query: 135 LDA-LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 A L A + + + F G W H + Sbjct: 131 KYAHLPEYDEAVRRFAPFVGTSYEHGVTLSNKPVEIYAIF----------GGQWPHSSFM 180 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINI-DESGAVGAV 252 +P GG+ CA + D + A+ + Sbjct: 181 IP---------------------------------------GGVMCAPTLADVTRAIAIL 201 Query: 253 NMERLNLVQSII--TRTADFINNVMIPDALAI------------GQFNKPWSEIG---TG 295 + ++ ++ N D + G F + G G Sbjct: 202 EYWKDEWLEKKWLGCSVDRWLQNKSWADVMEWMHENERHYNSDCGFFLRFAMAAGLDKYG 261 Query: 296 LSDKCVLSYGAF-----PDIANDFGEKSLLMP-GGAVINGDFNNVLPVDLVDPQQVQEFV 349 L+ G + G + L+ G +NG F + D QV+E V Sbjct: 262 AGWNNYLATGTYFHPELYARPTIEGRNAALIARSGVYVNGQFYD------FDQAQVREDV 315 Query: 350 DHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRW-----R 404 H++Y HPF+G T+P + + Q +Y+W KAPR+ Sbjct: 316 SHSFY---EGNHVLHPFEGRTEP-----------IDPEVGRRQGKYTWAKAPRYLIPGVG 361 Query: 405 GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 + +E GPLAR +IA G A + + A+ + S L R++ R HEA Sbjct: 362 SHPLEAGPLARQVIAGRPGAADWQDYDPLFLDAV---TTVGPSVLVRVMARMHEAPKYYK 418 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKID 524 ++ + D++ + K +P P E RG G TEA RG+L W ++DGKI+ Sbjct: 419 LVRKWLDQINLHEK---------FYIKPKELP-EGRGFGSTEAARGSLSDWIVLKDGKIE 468 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 YQ + PT WN PRD + G E A + +A P P+E+ S+D CL C+ H Sbjct: 469 NYQVITPTAWNIGPRDSREVNGPMEQAFLGAPIADPNDPVELGHVARSYDSCLVCTVHAY 528 Query: 585 GDD-GSELISVQV 596 + G EL ++ Sbjct: 529 DEKTGKELARFRI 541 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 366 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 157/594 (26%), Positives = 248/594 (41%), Gaps = 93/594 (15%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +V+DP+TRIEGH + + D V+ +A S TMFRG E I+ GRDP+DA ++RICGV Sbjct: 3 VVIDPVTRIEGHHGVRLKVED-GVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGV 61 Query: 79 CTGVHALASVYAIEDA------IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C H LAS++AIE+A G +P+ A ++RN + A + W Sbjct: 62 CHNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQ---------FVFDHPVW- 111 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 ++ + P Y + + Sbjct: 112 ---------------------AYALTGPDYCDAIHKTGLVRFD----------------- 133 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPH-PNWIVGGMPCAINIDESGAVGA 251 + EA+ Q+ + + GGK PH I GG+ I+ + + + Sbjct: 134 -------PIVGRGVKEAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIISKLIS 186 Query: 252 VNMER------LNLVQSIITRTADFINNVMIPDA---LAIGQFNKPWS-EIGTGLSDKCV 301 + ++ + L ++ + D + +I D L G P E+G GL D Sbjct: 187 IVLDVKKWALGVGLGKTALEHARD-VAGYVIDDVSKKLEKGVVEPPNDPEVGKGLYDLVS 245 Query: 302 LSYGAFPDIANDFGEKS-LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 L D GE++ ++ G + + + P + +++++F YR + Sbjct: 246 LILVMANLGLKDMGERTPTMLAYGFLADPNGELFFPSGFFNGKELEKFD----YRNIGED 301 Query: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 V +D Y + + I + + Y+W KAPR++G EVGPLAR + Sbjct: 302 VKYSYYDDEAGGSYVGEE--DTRKLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKG 359 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 ++ + +D + + L R + R E L+ +L Sbjct: 360 YRDGWEVGDPLD--LRKNLAGGRTASNALARNIARIQEELVLIDYLENLLLELKDYAGKK 417 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 + GVG EAPRGALGHW IR GKI+ YQ + PTTWN SPRD Sbjct: 418 AYVKYEIN---------DGDGVGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRD 468 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 K Q+G E AL+ T ++ +Q ++R +HSFD CLAC+ HV + S I + Sbjct: 469 SKDQMGPLEEALIGTPISESDQ-WNVIRVIHSFDLCLACTVHVYSEKSSWTIKI 521 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 362 bits (929), Expect = 2e-98, Method: Composition-based stats. Identities = 149/611 (24%), Positives = 226/611 (36%), Gaps = 103/611 (16%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 T+N L V P+ R+EG + V + D V+T A + MFRG E+IL+G+DP+ Sbjct: 4 TVNTKRMDLHVSPLGRVEGDLDLRVTVED-GVVTQAWTEAGMFRGFEMILKGKDPQAGLI 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 RICG+C G H S +A++ A ++P NA ++RNI A FY L +D Sbjct: 63 VTPRICGICGGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALFAID 122 Query: 131 WIDVLDA-LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 + A K A + + F G W H Sbjct: 123 LTNRRYAKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYAIF----------GGQWPH 172 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINI-DESGA 248 + +P GG+ C + D + + Sbjct: 173 SSFMIP---------------------------------------GGVMCGPTLSDVTRS 193 Query: 249 VGAVNMERLNLVQS--IITRTADFINNVMIPDALA------------IGQFNKPWSEIGT 294 + + R N ++S + ++ D LA +G F + EIG Sbjct: 194 IAILEEFRHNWLESRFLGCSVDRWLEIKTWEDVLAWVDENESQHNSDLGFFLRFGLEIGL 253 Query: 295 ---GLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDH 351 G L+ G + + D +V+E Sbjct: 254 DRFGAGCGNYLAMGTYLHHEKYNRPTIEGRNAALIQRSGIYAGGKHYEFDQARVREDHTF 313 Query: 352 AWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN----- 406 ++Y+ HPF+G T+P + Q +Y+W KAPR+ + Sbjct: 314 SFYQ---GSGLLHPFEGRTEP-----------IDPADAKRQGKYTWAKAPRYDVDGLGSV 359 Query: 407 AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKL 466 +EVGPLAR ++A G+ + VD + S ++ S L R+L R HE + Sbjct: 360 PLEVGPLARQVVAGKPGEE--WQDVDPLFS--DIIAKKGPSVLVRVLARLHEEAKLYKNV 415 Query: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLY 526 + + G L +P RG G TEA RGAL W + +GKI Y Sbjct: 416 REWL---------GELDLHDRFYIKPVEHEF-GRGFGATEAARGALADWIVLENGKIANY 465 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 Q V PT WN PRD + G E A + T + P P+E+ SFD CL C+ H Sbjct: 466 QVVTPTAWNIGPRDSRNVNGPMEQAYLGTTIHDPGDPVELGHVARSFDSCLVCTVHAYDS 525 Query: 587 D-GSELISVQV 596 G E+ ++ Sbjct: 526 KTGKEIGVYRI 536 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 359 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 159/581 (27%), Positives = 224/581 (38%), Gaps = 103/581 (17%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RL++ P R+EG + ++ + D +T A MFRG E+IL GRDP DA + RICG Sbjct: 3 RLILGPFNRVEGDLEVQLEVTDGR-VTEARVNAPMFRGFELILNGRDPMDALSIAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++A+ A+ DA G+ VP N N+MLA DHL HFY D+ + A Sbjct: 62 ICSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAVYA 121 Query: 138 LKADPRKT-SELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + R+ A S + R + F G LG G W H LP Sbjct: 122 ARPWFREAERRFAALAGSTSNGGLRSRAALAARARWFELIGTLG----GKWPHTGAVLP- 176 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 GG AI E + A E Sbjct: 177 --------------------------------------GGTSRAIETTERIRLLARVREM 198 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN---- 312 ++ + TA + V D+LA Q W G L + N Sbjct: 199 RAFLEQTLFGTA--LEEVATLDSLAALQR---WRARAAGSDMALFLDLAEATQLTNLGPG 253 Query: 313 -----DFGEKSLLMPGGAVINGDFNNVLPVDL-VDPQQVQEFVDHAWYRYPNDQVGRHPF 366 +G + G A+ G ++ L L +DP Q+ E HAWY HP Sbjct: 254 PGRYLSYGAYARFEGGHALARGVWDAALQQGLPLDPTQISEDARHAWYAESTSAQALHPM 313 Query: 367 DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 G+T P ++ YSW KAPR +E G +AR L+ G Sbjct: 314 AGLTQPE---------------PDKPGAYSWNKAPRLGSQVVETGAIARQLV---DGQPL 355 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 +V L+ + R+L R E ++ + L Sbjct: 356 IRAAV----------LAHGGTVYTRVLARLLEMARILPLMEQWLLAL----------QPH 395 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 P + +G+G TEA RGALGHW I +G+I YQ V PT+WN SPRD G G Sbjct: 396 APFHAVQAQPEQAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAGTPG 455 Query: 547 AYEAALMNTKMAIP-----EQPLEILRTLHSFDPCLACSTH 582 A EAAL+ ++ Q + + + SFDPC+ C+ H Sbjct: 456 ALEAALVGARLDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 155/593 (26%), Positives = 219/593 (36%), Gaps = 139/593 (23%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 RR+ V P R+EG + ++++D V+ +A ++RG E IL+GR DA V RI Sbjct: 2 TRRITVGPFNRVEGDLEVRLDLDD-GVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ ++A+V A+ A G++ N + N+ A DHL HFY D+ Sbjct: 61 CGICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDFARDA 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A + W F VQ Q LP Sbjct: 121 YAGR--------------PWHPEIAARFKAVQGSAA-------------------QAMLP 147 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNM 254 A L+ +I + GK PH + GG CAI++ E Sbjct: 148 ARARLL----------------QIMGLLAGKWPHSLAFQPGGTTCAIDLGER-------- 183 Query: 255 ERLNLVQSIITRTADFINNVMIPD----ALAIGQFNKPWSEIGTGLSD------------ 298 + SII DF+ M D LAI + D Sbjct: 184 ---VQLLSIIGDFRDFLERTMFGDSLDNVLAIDSVAALEAWRDGRGGDFARFLAVADDLA 240 Query: 299 --------KCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVD 350 ++S+GA+ GE + L G + DP + E V Sbjct: 241 LHRLGRIALPLMSFGAY------HGEDAPLFAAGVLDPLSAARTS----FDPAAITEDVA 290 Query: 351 HAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEV 410 AW R P + TDP ++ YSW KAPR G EV Sbjct: 291 RAWMR----DTSLSPLEADTDP---------------DADKPAGYSWCKAPRLAGGPAEV 331 Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 G LAR I GD + V R S R++ R E A + + Sbjct: 332 GALARQAI---DGDPLIRDCVARFGSC----------VTTRVVARLRETARLALAMHQWA 378 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVV 530 +L +LA E+ E + G+G EA RG+LGHW +R I YQ + Sbjct: 379 RQL-------DLAEPFLERGERG---RDGTGIGLVEAARGSLGHWIELRGDSIRRYQIIA 428 Query: 531 PTTWNASPRDPKGQIGAYEAALMNTKMAIPE-QPLEILRTLHSFDPCLACSTH 582 PT+WN SPRD G G E AL+ T + + + I + SFDPC+ C+ H Sbjct: 429 PTSWNFSPRDRGGVPGPLEQALVGTPVGDAGARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 349 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 151/624 (24%), Positives = 244/624 (39%), Gaps = 127/624 (20%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + + D +V+ +A GT +RG E ++ GRDP DA F +R+CG+C+ HA A+ A+E Sbjct: 1 MEMKDGSVV-DARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESL 59 Query: 95 IGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSL 152 G +P +A ++RNI+ W H+ + Y D + D + D + S++ +L Sbjct: 60 AGATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPD---LADPIYGDLLRYSDVGTAL 116 Query: 153 SSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF 212 + G G F + + P A Y +A+ F Sbjct: 117 T----------------------GELAGRFNVPGYASTGHTAPGSA-------YTDAIRF 147 Query: 213 QREIVKIHAVFGGKNPHPNWIVGGM----PCAINIDESGAVGAVNMERLNLVQSIITRTA 268 + + A+ GG++PH IV G P A ++ + A ++ L + Sbjct: 148 VKLTGEAEAILGGRSPHSPVIVPGGVTVRPSASDLMKLKGCYASIVDFLERRLTYPLSLD 207 Query: 269 DFINN-----------------------------------------VMIPDALAIGQFNK 287 +++ N +M D L++ + + Sbjct: 208 EWLENTHSTQANPDFILNRIKSLPTGDLSMEKGWNDMQLFSVFCSRMMSYDFLSMPIYVE 267 Query: 288 PWSEIGTGLSDKC--VLSYGAFPDIANDFG------------EKSLLMPGGAVINGDFNN 333 + G L D+ L+YG F + + G E + +P G N Sbjct: 268 LDTLGGYPLYDQLIGFLNYGGFYRVRDRAGNFTDGYSPVDGEEGTFEIPSGFTPGSMPNL 327 Query: 334 VLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQE 393 DP V E V +++ Y + P G T P D+ S Sbjct: 328 FDSPGKADPAMVAEQVSGSFFSYSGGETALKPEAGETSPSPRAADIDYS---------GH 378 Query: 394 RYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS-----T 448 +YS++KAPR+ E GPLAR + + + ++ +MM N S +S Sbjct: 379 KYSFVKAPRYGNVPCETGPLARMINS----REPYIMNIMQMMHFSNPVFSSGKSYNRTSV 434 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 R+L R E A L + D L + + + P T G EAP Sbjct: 435 YTRVLSRMQECLITAQLLGRWIDDL-------EVHSDPRKYCVPVTPGRGEAGACMIEAP 487 Query: 509 RGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI-------P 560 RGALGHW + DG+I YQ + PTTWNASPRD + + G E +L+ K Sbjct: 488 RGALGHWMRLDEDGRIAGYQIISPTTWNASPRDAETKFGPIELSLIGAKTTPRGNIPGSE 547 Query: 561 EQPLEILRTLHSFDPCLACSTHVL 584 P+ + + SFDPC++C+ H + Sbjct: 548 VNPISLYHIIRSFDPCVSCAVHTI 571 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 347 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 158/664 (23%), Positives = 241/664 (36%), Gaps = 113/664 (17%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVI--TNAVSCGTMFRGLEIILQGRDPRDA 68 T + R+ +DPITRIEGH+ ++++ + A + TMFRG EI GR P D Sbjct: 2 TRTSRTIRIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPEDL 61 Query: 69 WAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA-TLWCHDHLVHFYQLA 127 RICGVC HA ASV A++ A G+ ++RN+ A T +DH + L Sbjct: 62 PHVTSRICGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGMLE 121 Query: 128 GMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQ--NRLKKFVEGGQLGIFRNG 185 G D+ + S+ S+ K D+ + +E L Sbjct: 122 GPDYSAAI---------VSKFTPSVYDHAKKVYAEHRDIHGFTTIADIMEA--LNPLTGK 170 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDE 245 W + A+ FQR + + G++ HP+ ++ G D Sbjct: 171 VWQY-------------------AVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDISDA 211 Query: 246 SGAVGAVNMERL------NLVQSIITRTADFINN--------VMIPDALAIGQFNKPWSE 291 + A + ++ F + L+ ++P Sbjct: 212 ENLLLAYTTRLIKLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSYAYTSEPSEC 271 Query: 292 IGTGLSDKCVLSYGAFPDI-----------------ANDFGEKSLLMPGGAVINGDFNNV 334 G + V S G F D A D L+ G VI G+ + Sbjct: 272 PGMKTTVLAVTSSGIFDDPEAYGEDMPQYDPVEFYKAIDKAAIKRLLKPGIVIRGELVST 331 Query: 335 LPVDLVDPQQVQEFVDHAWYR--------YPNDQVGRHPFDGITDPWYNPGD-VKGSDTN 385 + + + E V+ A+Y D G G D Y+P + V Sbjct: 332 SLKEY--QRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLHGKYDAKYHPWNKVTIPKLE 389 Query: 386 IQQLNEQERYSWIKAPR--WRGN---AMEVGPLARTLIAYHKGDAATVESVDRMMSA--- 437 + +N +Y+W R W+ EVGP AR LI + V+ D A Sbjct: 390 GKAINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWFKAGGR 449 Query: 438 ---LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN--------------- 479 ++LP + G + C E +W + +L N Sbjct: 450 EITVHLPRACTDELPGSV-CEPMEFKWKVPPISTTIYRLWARAFNLLLDVVGAWKGVSQY 508 Query: 480 -GNLATASTEKWEPATWPTE-CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNAS 537 L TE P P G GFTEAPRG + HW +GK+ Q PTT N S Sbjct: 509 RSLLDKRYTETSRPWKVPRTITFGFGFTEAPRGTVRHWVVQENGKVLNVQIHAPTTGNVS 568 Query: 538 PRDPKGQIGAYEAALMNTKMAIPEQPLE-----ILRTLHSFDPCLACSTHV-LGDDGSEL 591 P D G +E + +N+ + P E +R++ SFDPCLAC+ H+ DG + Sbjct: 569 PHDRFGY-SPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACAVHLAFRKDGKTV 627 Query: 592 ISVQ 595 +V+ Sbjct: 628 KTVE 631 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 341 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 142/584 (24%), Positives = 234/584 (40%), Gaps = 82/584 (14%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V+ P+ R+EG + +V + V+ A +FRG+EIIL+G+ P D+ RICG+C Sbjct: 5 VISPLNRVEGDLDLKVVFEGKKVVK-AFPMSRLFRGIEIILKGKFPMDSLVITPRICGIC 63 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 G H L++ A+E A G VP NA +RN+M + + H Y + +D +++ Sbjct: 64 GGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNLKYEKM 123 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 R + W + K++ E G W H +P Sbjct: 124 GFYRDI------VLRWAPYLGQSYKQAVAWSKRYTEIY---AIFGGQWPHGSAMVPGGVT 174 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 ++ + + + + I A F K I+GG +++ Sbjct: 175 TDPLSN--DIIKAKSILASITAEFLEK-----VILGG----------------PLDQFLQ 211 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKP--WSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 V+S + + D I + W +IG+G + ++SYG + + Sbjct: 212 VKSK-RDLDQWAKDYPNGDISKIWNYGLEMKWDKIGSG--SQYLMSYGHV-TLPEHYDPA 267 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRY-PNDQVGRHPFDGITDPWYNP 376 S + + + + + EFV H++Y Y D+VG HP++G T P Sbjct: 268 SHVEKKRFREGLLDLRTREIHQIKEENIVEFVSHSFYSYEQGDKVGLHPYNGETTPLP-- 325 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWR-GNAM---EVGPLARTLIAYHKGDAATVESVD 432 + +Y++ KA R++ G EVG LA ++A GD + V Sbjct: 326 ------------PESKGKYTFTKAFRYKLGGKYVAPEVGALAMMVVA---GDPLMTDLVY 370 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 R+ + S L R + R ++ + + +P Sbjct: 371 RIGT----------SVLAREIARIVRLARIHEIMREELESYEYD---------EITYIKP 411 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 RG G EA RG+LGHW I +GKI YQ V PT N P DP G AL Sbjct: 412 EEK-LSGRGYGLVEASRGSLGHWLVIEEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIAL 470 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 T++ P P+E+ + S D C+ C+ HVL G E++S+++ Sbjct: 471 QGTEVENPNNPIEVAHIVRSHDACMVCNVHVLDG-GKEILSMRL 513 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 335 bits (858), Expect = 4e-90, Method: Composition-based stats. Identities = 156/644 (24%), Positives = 249/644 (38%), Gaps = 117/644 (18%) Query: 19 LVVDPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + +DPITRIEGH+ + ++ TN TMFRG E+ ++GR P DA A R+CG Sbjct: 36 IFIDPITRIEGHLGLKAEVDVTSRKTTNTWVFATMFRGFEVFMRGRPPEDAIAISSRVCG 95 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNI-MLATLWCHDHLVHFYQLAGMDWIDVLD 136 VC HA A+ A + A+G ++RN+ + T +DH + L G D+ +V Sbjct: 96 VCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSEV-- 153 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 S+L S K++P + V GY + Sbjct: 154 -------AVSKLTPSCWEAAKTTPAEYSAVH-----------------GY--RTIADIMK 187 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + N + + + +QR + + G++ HP ++ G I+ D S A Sbjct: 188 DMNPITGRIWQLTVKYQRIAREAGVLIYGRHSHPATLIPG---GISTDLSTAQYLFEGYA 244 Query: 257 LNLVQ---------SIITRTADFINN----------VMIPDALAIGQFNKPWSEIGTGLS 297 L Q ++ ADF N P + G F+ P E + L Sbjct: 245 FRLTQLTAWTKFVVAVWMDLADFYNKNCNYEDEGYTYSKPILYSSGVFDDP--EAYSQLG 302 Query: 298 DKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLP--VDLVDPQQVQEFVDHAWYR 355 D Y ++A L GG ++ + V+LVD +E+ D Sbjct: 303 DDYKTIYEKIDEVAKKRAAPPGLYIGGELVTENITEHQRNVVELVDSSFYEEWKDKTTLF 362 Query: 356 YPNDQVGRHPFDG-ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPR--WRGN--AMEV 410 D G G T WY+P + K + + +YSW R W+G EV Sbjct: 363 TKTDPAGNPLVGGDETLVWYHPWN-KTTIPRPTDSSWSGKYSWAATVRLYWKGKLYPFEV 421 Query: 411 GPLARTLIAYHKGDAATVE---------------SVDRMMSALNLPLSGIQ--------- 446 GP+A+ + H VE ++ + +LP + Sbjct: 422 GPIAKMYVMAHSNLKGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEEVTFTYYAP 481 Query: 447 ---STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVG 503 +T+ R+ RA + F + + + + + AS EPA G G Sbjct: 482 PKSTTIERVRARAFDMAVDVADAWAFVLRGLYYINSKGMTQASRPWKEPAF----SLGFG 537 Query: 504 FTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ------------------- 544 E PRG + HW +++G+I YQ PTT N PR PKG+ Sbjct: 538 QLEVPRGNVEHWIVVKNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTKSPEGYC 597 Query: 545 IGAYEAALMNTKMAIPEQP-----LEILRTLHSFDPCLACSTHV 583 + +EAA ++T ++ +P L+ +R + SFDPC+AC+ H+ Sbjct: 598 LSPFEAAALHTVVSEEVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 331 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 153/627 (24%), Positives = 242/627 (38%), Gaps = 113/627 (18%) Query: 22 DPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 DPITRI G + I+ + + S ++FRG I ++G+DPRD+ RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 HA SVYA A G+K P A+ I N+ A + DH + L G+D+ + + ++ Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCEQM--VRE 143 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 E A++ + + GY + N Sbjct: 144 TNPGVWEKAKTAEAPHAAEHGY--------------------------RTIADIMTALNP 177 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLV 260 Y E L R ++ + G++ HP+ + G + + L Sbjct: 178 FTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPT-------------IQLF 224 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEI----GTGLSDKCVLSYGAFPDI------ 310 ITR ++ + L F+ + + G + +G+F D Sbjct: 225 TDYITRLMKYVEFMKKVVPLHDDLFDFFYEALPGYEEVGRRRILLGCWGSFQDPNVCDYN 284 Query: 311 ---ANDFGEKSLLMPGGAVINGDFNNVLPVD------LVDPQQVQEFVDHAWYRYPNDQV 361 +G + P G V++G+ VD ++ + DH ND + Sbjct: 285 YRTMTKWGRGMFVTP-GVVVDGELLTTDLVDINLNIRILLGSSFYQDWDHEETSVKNDPL 343 Query: 362 G-----RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN------AMEV 410 G +HP++ T P Q+ N Y+W+ +PRW A++ Sbjct: 344 GNAVDRKHPWNQTTLP------------RPQKRNFGGNYTWVMSPRWLDKRTGDHLALDT 391 Query: 411 --GPLARTLIAYHKG--DAATVESVDRMMSALNLPLSGIQ-------------STLGRIL 453 GP+AR G D ++S + + LP + ++ + + R Sbjct: 392 GGGPIARLWATALAGLVDIGYIKSTGHSV-KIYLPRTALKPEAEFEWKIPMWSNAIERDR 450 Query: 454 CRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALG 513 R + ++A YF ++ + L G T + K P E G GF EA RG L Sbjct: 451 ARTYFQAYSAAAALYFAEQALAELHAGRTRTFTDFK-----VPDEAIGCGFHEAVRGVLS 505 Query: 514 HWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQP-----LEILR 568 H IRDGKI Y PT WNASPRD G G YE A+ NT + P ++I+R Sbjct: 506 HHLVIRDGKIANYHPYPPTPWNASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMR 565 Query: 569 TLHSFDPCLACSTHVLGDDGSELISVQ 595 + SFDPCL C H+ +G + Sbjct: 566 AVRSFDPCLPCGVHMYVGNGKTIEQSH 592 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 312 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 132/576 (22%), Positives = 210/576 (36%), Gaps = 132/576 (22%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG ++ ++ I + I +A FRG E IL+ R P DA RICG Sbjct: 3 KIERKVLHRVEGEIQLKL-IWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICG 61 Query: 78 VCTGVHALASVYAIEDAIG-----IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H +A+V A+ED I + A++IRN+ +H+ FY Sbjct: 62 ICGHSHLIATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFY-------- 113 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 F + + LK + L F Sbjct: 114 ------------------------------LFVMPDFLKLEKDKDILEDFTP-------- 135 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 + + +AL EI+KI ++ G+ PH ++ V G + I+ Sbjct: 136 --------LKGDKWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINTDIV---- 183 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 E +++ S+I + I I L++ F++ +I G + + Sbjct: 184 --EAISITDSVIRFFEEEIIGTDINTYLSVESFDQFMDKINKGDLRRFI----------- 230 Query: 313 DFGEKSLLMPGGAVINGD-FNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 L G G ++ + VD + P V+E V Sbjct: 231 -----ELTFKNGMEKTGRAYDRFITVDAILPC-VREGVKK-----------------KRS 267 Query: 372 PWYNPGDVKGSDTNIQQLNE-----QERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 ++P +K D++ + ++RYSW KA R+ G ME GPLAR ++ ++ Sbjct: 268 CKFDPSRIKEVDSHSFLTKDGTDFSRKRYSWAKAVRYDGLPMETGPLARKAVSK---NSL 324 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 + + R S L RI R E A L+ + + N S Sbjct: 325 FQDLISRFG----------DSYLVRIWARIDEIGRMALTLKSYLLSI-------NTKEPS 367 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 K E G G EA RG+L H + GKI Y + PTTWN PR + Sbjct: 368 YIKPPVKIENLEGEGTGLIEAARGSLLHRLELEKGKIKKYTIITPTTWNLGPRCER-YHS 426 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 E A++ E L+ L SFD C C+TH Sbjct: 427 PAEKAIIGL-----ESSLKAEMILRSFDVCSVCTTH 457 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 125/568 (22%), Positives = 199/568 (35%), Gaps = 134/568 (23%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+ + R+EG + E+ + + I +A RG+E +L+GR DA R+CG Sbjct: 2 RIEKRLLARVEGTAQLEL-VWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIG-IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C H +A V A+EDAIG +++ A ++R+I L +H+ FY D+I + + Sbjct: 61 ICGHAHLMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFYLFVMPDFIRLGE 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L + FR W Sbjct: 121 KL--------------------------------------DEFEPFRGKRWK-------- 134 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 EA+ E +K+ A+FGG+ PH ++ V G G Sbjct: 135 -----------EAISVASEAIKVIAIFGGQWPHSSYAVPG----------GITSNFTSTD 173 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 ++ ++++R F ++ S G + F D+ +G Sbjct: 174 VSKALALVSRVEGFFLESLVG-----MPVEAFLSLRKHGSWEGLKGDVKLFIDLCFKYGL 228 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + + M G ++ G V P P + Sbjct: 229 ERVGMSYGRLLTG--GEVFPC--------------------------------ITPGHFT 254 Query: 377 GDVKGSDTNIQQLNEQER--YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 G+ K NI ++ E + YS K R+ G E GPLAR ++ G+ Sbjct: 255 GEKKLCSLNISKIREADGSPYSGAKRVRYNGMPYETGPLARQFLS---GNPFVKR----- 306 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 L S + R+L R E ++ L + +K + +P Sbjct: 307 -----LHKMYGDSYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKEP---SCQIPFQKPER 358 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 GVG EA RG L H +I G I Y + P+ WN PR K +G E A++ Sbjct: 359 IT--GEGVGIVEAARGTLIHRVSIEKGVITRYHIITPSVWNLGPRCEK-YLGVAEKAMIG 415 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH 582 E P+ L SFD C C+TH Sbjct: 416 L-----ENPIHAEMVLRSFDVCSVCTTH 438 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 290 bits (743), Expect = 7e-77, Method: Composition-based stats. Identities = 133/543 (24%), Positives = 197/543 (36%), Gaps = 97/543 (17%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 + ++ +T A +FRG E ILQGR P DA V RICG+C+ ++A+ A+ Sbjct: 1 EVTLTLDAAGFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQAL 60 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQS 151 D IK N ++ +LA DHL HF+ D+ A + P + + + Sbjct: 61 ADWARIKPVPNGALVAQTVLAVENLADHLTHFFLFFMPDFTH--SAYRTMPWFDAAVRRF 118 Query: 152 LSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALD 211 +S+ + R + F L G W H P + A++ Sbjct: 119 APYRGESAARWLAA---RAQWF----HLVGLLAGRWPHTLAVQPSGTTRT-----IHAME 166 Query: 212 FQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI--ITRTAD 269 QRE++++ G+ ++ + L+ V ++ Sbjct: 167 -QRELLRMV----GQM-----------------RRYLTESLFGDTLDAVLALDSADALLA 204 Query: 270 FINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVING 329 + DA Q G + LSYGA+ P G Sbjct: 205 WAEGR-ESDAAFFIQVAHALELFTVGRAYDRFLSYGAY-----------RAWPAGVWERA 252 Query: 330 DFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQL 389 +V +D + E V +W HP +G T P L Sbjct: 253 TAASV----PLDEAAIVEEVAASWL----GGAASHPAEGETVP---------------WL 289 Query: 390 NEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 + YSW KAPR+ G E G LAR ++A G + V R S Sbjct: 290 ERPDAYSWCKAPRYHGAPAETGALARAVVA---GVPLARDLVQRWGG----------SLF 336 Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR 509 R++ R E ++ + ++ EP WP E RGVG EA R Sbjct: 337 SRVIARLWECARIVQWVEAWLTEI----------DVKAPFIEPVVWPNEGRGVGLVEAAR 386 Query: 510 GALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRT 569 GALGHW + +G+I YQ + PTTWN SPRD GQ G E AL P + Sbjct: 387 GALGHWLEVANGRIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEGLTTGAGAMPF-VHHV 445 Query: 570 LHS 572 + S Sbjct: 446 VRS 448 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 290 bits (743), Expect = 8e-77, Method: Composition-based stats. Identities = 116/574 (20%), Positives = 191/574 (33%), Gaps = 118/574 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DP+TRIEGH + + ++D+ + +A T FRG E GR + RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS + + + +P+ A +R +M H + F+ L+ D + +D Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMD 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + A + + P Sbjct: 122 SEPAKRNVFGLIG--------------------------------------------VDP 137 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E G + ++ +I + GGK HP W V G G + E Sbjct: 138 ELARGG-------IRLRQFGQEIIELLGGKKIHPAWAVPG----------GVSDPLTTEN 180 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + +Q+ I + N AI F K K ++G FP + Sbjct: 181 RSHIQNRIPEAKSTVLN-------AIALFKKLLEN-----YQKEAQTFGNFPSLFM---- 224 Query: 317 KSLLMPGGAV--INGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 L+ P G +G V + +++ H + + V + + P+Y Sbjct: 225 -GLVTPQGLWETYDGHLRFVDSGGNIVADKLEADNYH---EFIGEAVQEDSY--LKSPYY 278 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 P S + R VGPLAR I G + + Sbjct: 279 RPLGYPDSKDHC---------------RLDSGMYRVGPLARLNICSQIGTPLADQELREF 323 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + ++S+ R E + ++ D + + A Sbjct: 324 RTY---GSGTVKSSFFYHYARLIEILASVEHIEILLDD----------PDILSTRLRAAA 370 Query: 495 WPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 VG +EAPRG L H I +G I ++ T N + + A A Sbjct: 371 GINRLEAVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNNLAMN---RTVAQIARHF 427 Query: 554 NTKMAIPEQPLEILRT-LHSFDPCLACSTHVLGD 586 I E L + + +FDPCL+CSTH G Sbjct: 428 IQGSQIQEGMLNRVEAGIRAFDPCLSCSTHAFGK 461 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats. Identities = 118/569 (20%), Positives = 200/569 (35%), Gaps = 128/569 (22%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V+ + RIEG + + + +I ++ FRG E IL+ + P DA + RICG+C Sbjct: 3 TVNLVERIEGEAKLNCSWKN-GIIIDSRIDFLNFRGFEYILEDKSPLDALVYTPRICGIC 61 Query: 80 TGVHALASVYAIEDAI-----GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 H A+V +E A +++ A ++R I L H+ FY D I Sbjct: 62 GQAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWFYMFILPDIIK- 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 L ++ E + W Sbjct: 121 ---LNSNDLNIYE---------------------------------PLKGKKW------- 137 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 LEA E +K A+ G+ PH ++++ G + + + +NM Sbjct: 138 ------------LEACKVASETIKALAIIAGQWPHSSYMIPGGV----MSDPTKMDLINM 181 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + N +Q I D I N + + L+ + +IG L F D+A + Sbjct: 182 Q--NYLQIAINFFEDSIVNTSLDNYLSFTSVDNF-EKIGGDLK--------LFKDLAFKY 230 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 ++ I+ N+ R+ + + + I + Sbjct: 231 ELQNYGKSYNRFISLSETNLFKKG----------------RFSSKVINKIDLSKILENSD 274 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + + G + ++++W K + E GPLAR +I+ K ++ D Sbjct: 275 STFTLSG--------DNTQKHTWSKNVTYDDAFFETGPLARAIISNRKFIKDIHKNFD-- 324 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 S R+L R E + + K+ T + S K + Sbjct: 325 -----------DSAFTRVLARLDELAFLLEDTKNLISKVNTKEASFIKPKISLNKID--- 370 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 + V EA RG+L H I GKI LY + PT WN P + K Q G + A++ Sbjct: 371 ---KVEAVSAVEATRGSLYHKIDIEKGKIKLYDVITPTVWNLGPSNKKEQ-GIAQKAIIG 426 Query: 555 TKMAIPEQPLEILRTL-HSFDPCLACSTH 582 T ++I + + SFD C C+TH Sbjct: 427 T------SSIDIAKIILRSFDVCSVCTTH 449 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 123/561 (21%), Positives = 192/561 (34%), Gaps = 156/561 (27%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 +TR+EG + + ++ VI +A RG+E +L+ R DA RICG+C H Sbjct: 8 LTRVEGEASLNL-VWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICGICGHAH 66 Query: 84 ALASVYAIEDAIGI-KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADP 142 +A+V AIE+AIGI ++P+ A I R + T +H+ FY D++ ++L Sbjct: 67 LIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKESLS--- 123 Query: 143 RKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMG 202 Q F+ W Sbjct: 124 -----------------------------------QFEPFKGERWK-------------- 134 Query: 203 FAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNMERLNLVQ 261 A+ F +IVKI A+FGG+ PH ++ V GG+ + E + E + Sbjct: 135 -----RAVQFSSQIVKIIALFGGQWPHSSYAVPGGITSNFSEREVLKALNLVKEGKTFFE 189 Query: 262 SIITRTAD-FINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320 ++ + F+N + L+IG+ + G G + + Sbjct: 190 KNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGG-----------GLAYCFNPSYKKGK-- 236 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 G V + V ++ D + NP K Sbjct: 237 ---GKVCKFNVRYVQELEAADYSK-----------------------------ANPVRYK 264 Query: 381 GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNL 440 G GPLAR LI+ + L L Sbjct: 265 GLPYE------------------------TGPLARELISKNPL-------------VLKL 287 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR 500 + S R+ R E + L+ +LM +L+ + WE + Sbjct: 288 YKNYGDSYAVRVAARLAEIKDLLEILEKLLKELMNHLEEPSCL------WEDRSD-ESGE 340 Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 G G EA RG L H I GKI Y+ + P+ WN PR K +G E A++ Sbjct: 341 GFGVVEAARGTLIHRVVIEKGKIKDYKVITPSQWNLGPRCKK-YLGVAEKAIVGL----- 394 Query: 561 EQPLEILRTLHSFDPCLACST 581 + L+ L SFD C C+T Sbjct: 395 DSELKAQMVLRSFDLCSVCTT 415 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 268 bits (686), Expect = 3e-70, Method: Composition-based stats. Identities = 115/577 (19%), Positives = 191/577 (33%), Gaps = 131/577 (22%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 ++ V+DP+TR+EGH + ++++D+ + +A T FRG E ++GR + RI Sbjct: 2 SKKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITARI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LA+ A +D + VP++A+ +R +M H + F+ L+ D + Sbjct: 62 CGICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGY 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 DA AD LA++ + Sbjct: 122 DADPADRNIEGVLAENPQLAER-------------------------------------- 143 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 +D + + A G K HP++ V GG+ ++ ++ + + Sbjct: 144 -------------GIDLRSFGQNVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEESQ 190 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 V+ I D + D L Y +P Sbjct: 191 PLAGYVRETIDLLKDIFEEM-----------------------DDDTLDYATYPTGYM-- 225 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 G G + + + G Sbjct: 226 --------GLVTEEGGLEHY-----------------------DGDIRLVDESGDQLEEI 254 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + G + + ++ + K + VGPLAR E Sbjct: 255 DDGAYRDIIAERSKEWSYLKFPYYKDRGFEDGQYRVGPLARLNAVDDVRTPQAHEEWVEF 314 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 M A + + R E + ++Q + ++ +G T Sbjct: 315 MDAAEGAVHERSTYY--HWARLIEMLYCVERIQELLED--DDVYDGITNIP--------T 362 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 P GVG EAPRG L H I D GK++ +V TT N + KG A E Sbjct: 363 KPKAGTGVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMN-KGVTSAAE---- 417 Query: 554 NTKMAIPEQPLEILR----TLHSFDPCLACSTHVLGD 586 T + PE P IL + +DPCL+CSTH +G+ Sbjct: 418 -TFIDGPEIPEGILNKMESVIRCYDPCLSCSTHAIGE 453 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 267 bits (682), Expect = 1e-69, Method: Composition-based stats. Identities = 111/570 (19%), Positives = 188/570 (32%), Gaps = 115/570 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +R+++DP+TRIEGH + + ++D +T+A T FRG E +GR + RIC Sbjct: 3 QRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPRIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS A + + + +P A +R +M H + F+ L+ D +L Sbjct: 63 GICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPD---LLL 119 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 ++DP + + + P Sbjct: 120 GWESDPAQRNVFGLMAAE-----------------------------------------P 138 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNME 255 + G + ++ ++ GG+ HP W V GG+ A+ + A +E Sbjct: 139 DLARSG-------IRLRQFGQEVIQHLGGQKIHPAWAVPGGVRSALTDQGREQIRAGLLE 191 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + S + R D + D + + + + GL + L Sbjct: 192 VRSTALSTLKRFKDLLE-----DHASEARIFGNFPSLFMGLINPKGL------------- 233 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 G + D + D +DP Q Q F+ A D + P+ Y Sbjct: 234 ---WEHYQGCLRFVDSVGNIIADHLDPSQFQSFIGEA---VQTDSYLKSPY-------YR 280 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P + R VGPLAR + G + + Sbjct: 281 PLGYPDQTPGLC--------------RLESGMYRVGPLARLNVCDRMGTPLADQELQEFR 326 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 N + S+ R E +++ + Sbjct: 327 QRGN---GTVTSSFYYHYARLIEILACIERIEQQIED----------PGLCQPPLRAQAD 373 Query: 496 PTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 + GVG +EAPRG L H + G + ++ T N + + L Sbjct: 374 VNQLEGVGVSEAPRGTLFHHYQVDATGLLQSVNLIIATGQNNLAMN-RTVAQIARHYLHG 432 Query: 555 TKMAIPEQPLEILRT-LHSFDPCLACSTHV 583 + PE L + + +FDPCL+CSTH Sbjct: 433 PDI--PESMLNRVEAGIRAFDPCLSCSTHA 460 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 267 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 111/588 (18%), Positives = 197/588 (33%), Gaps = 141/588 (23%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ V P+TRIEGH + ++++D N T+A RG E LQGR +A V +IC Sbjct: 3 KQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LA+ A+++ G++ P AN++R +M + H H +HFY L D++ D Sbjct: 63 GICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFVFTPD 122 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 +P + + ++ ++ Sbjct: 123 ---GNPTQRNVFGIVGANPALAT------------------------------------- 142 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNME 255 EA+ F++ +I G++ +P +I GG+ + + + + + Sbjct: 143 -----------EAVMFRKIGQQIVEATAGRSINPVTYIPGGISKGLTQADVDRLLPMAKQ 191 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + Q+ + A I N I +G+ Sbjct: 192 AVTYAQNALA-LAKPIFNQYIDAIKLLGEAES---------------------------- 222 Query: 316 EKSLLMPGGAVINGDFNNV---LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 M G V NG+ L + D ++EF + +Y ++ V H Sbjct: 223 -----MHMGLVKNGNLELYDGMLRLQGKDGSIIKEFKPQDYLQYISEYVYPH-------- 269 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-----GNAMEVGPLARTLIAYHKGDAAT 427 S++KAP W+ V PL+R + Sbjct: 270 -----------------------SYMKAPYWKEMGWENGMYRVSPLSRINVCDQIDTPLA 306 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + A P TL R E +A+ K + Sbjct: 307 NAELQEFRKAFGRPAQM---TLLYHYARLIELLYASEKAVELLSN----------KAITG 353 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWA-AIRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 ++ GVG EAPRG L H G I +V T N + + Sbjct: 354 KELRVPVKARAATGVGVIEAPRGTLIHDYDTDEKGMITKANIIVATAHNNKAINLGLKNT 413 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 A ++N+ + + ++DPC +C+TH + ++ Sbjct: 414 A--QKIINSPTPEEGILNRMEMVIRAYDPCFSCATHSVAGKMPLEVTF 459 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 264 bits (675), Expect = 6e-69, Method: Composition-based stats. Identities = 115/577 (19%), Positives = 191/577 (33%), Gaps = 133/577 (23%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TRIEGH + V+++D + + FRG E LQGR +A V RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVP---DNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 +C H LA+ A++ G + A +R IM + H H +HFY LA D+I Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 D RKT + Q + P Sbjct: 123 KD------RKTRNVFQIIKDAP-------------------------------------- 138 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVN 253 L+A++ ++ +++ GG+ HP + GG+ ++ + + Sbjct: 139 ---------DIALQAIELRKNALELVRATGGRPIHPTSSTPGGISTELDDETQKDLLKKA 189 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 + L ++ + LA+ F + + + L + G D D Sbjct: 190 QRNVELAEATLE--------------LAVPIFEENIDLVNS-LGNIETYHTGLVKDGVWD 234 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVD-HAWYRYPNDQVGRHPFDGITDP 372 + + + F P D D + E V ++W ++P Sbjct: 235 VYDGIVRIKDK--EGNMFREFKPADYAD--TIAEHVKPYSWLKFP--------------- 275 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 +IK + V PL+R +A Sbjct: 276 ------------------------YIKDLGYPDGVYRVSPLSRLNVA--DKMPDAAPKAQ 309 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 Q TL R E A + G+L S EK+ Sbjct: 310 EHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALE--------GDL---SGEKFPD 358 Query: 493 ATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 + GVG EAPRG L H +G I VV T N + I Sbjct: 359 SLERQAGDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAME--MGIQKVAQD 416 Query: 552 LMNTKMAIPEQPLE-ILRTLHSFDPCLACSTHVLGDD 587 + + + ++ + + ++DPCL+C+TH + Sbjct: 417 YIKPGVEVDDKIFNLMEMVIRAYDPCLSCATHTIDSQ 453 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 104/583 (17%), Positives = 201/583 (34%), Gaps = 125/583 (21%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TR+EGH + ++ +D + RG E L+GR DA F RICG Sbjct: 3 KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H LAS A+++ G+K+P+ AN++RN++ H H +HF LA D + Sbjct: 63 ICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLM----- 117 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + + ++ G + + +K Sbjct: 118 ----------FPTTDDALKRNLLGVAGENMDMIK-------------------------- 141 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMER 256 +++ ++ I GG+ HP IVGG + +E + ++ Sbjct: 142 ----------DSIAMRKVGQTIVQKVGGRAIHPVTAIVGGQSKPLTEEERDELLTLSDNL 191 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + + + + + N+ D + +G +G + G Sbjct: 192 VETAERTLNVGKEMVENLKEKDLMNLG--YFESYHMG-----------------LVNNGA 232 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDP-QQVQEFVD-HAWYRYPNDQVGRHPFDGITDPWY 374 + + V+N + D + + E V +++ ++ Sbjct: 233 QDIYEGNIRVVNSEGKIEYEFDPAEYANYITEGVRPYSYLKF------------------ 274 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + + + + A V L+R + + + Sbjct: 275 ---------LALLKRRGEGK-----------GAYRVNTLSRLNVCDKMPTPIAQKYYEEF 314 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + P + R E ++ ++ F + + + + E Sbjct: 315 VKTYGKPAHQ---PMLFHYARLIELLSSSELIRKFLE--------DDKIVDTDVRAEVDP 363 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 GVG EAPRG L H D G I+ VV T N D G E + Sbjct: 364 KNITGEGVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDI-GVQKVAEKYIK 422 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 ++A P + + ++DPCL+C+TH +G + +++S+ V Sbjct: 423 TPEVAKPHILNHMEMVIRAYDPCLSCATHTIG-EEPKILSIHV 464 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 258 bits (659), Expect = 4e-67, Method: Composition-based stats. Identities = 109/573 (19%), Positives = 193/573 (33%), Gaps = 133/573 (23%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ + PITRIEGH V ++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C VH LA+ A+++ G +P+ A +R +++A H +H + L+ D++ Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDYL---- 117 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L+ T +A + P + + +E ++G Sbjct: 118 -LEGATPATRNVAGLAKANP-----------DLARMAIEARKIG---------------- 149 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 QR + GGK HP + G G ++ ++ Sbjct: 150 ----------------QRITEEA----GGKPIHPVSAIPG----------GMSFSLTEQK 179 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +++ R+ + ++ A+ + +F Sbjct: 180 RAELEAYAKRSLE--------------------------------IAVAAWNLVNGEFDR 207 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 K+ + V+ DF + + + + +G + + Sbjct: 208 KADFVKTLGVVQTDFIGMTSGGKFE--------------TYDGPIRMMDANGGSLGEFQA 253 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNA--MEVGPLARTLIAYHKGDAATVESVDRM 434 D + E YS++K + + + VGPLAR +A G + + Sbjct: 254 KDY-----SSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVADSMGYPEADKMLAEF 308 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + L R E A+ + + A P Sbjct: 309 RAKYGRAPQQ---PALYNLARIIEVAAASERALALLQ---------DRAITDKNVRNPVA 356 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 RGVG EA RG L H + D G I +V T N D G +E A Sbjct: 357 GIKNTRGVGIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAID----RGVFETAKK 412 Query: 554 NTKMAIPEQPLE-ILRTLHSFDPCLACSTHVLG 585 E L I + ++DPC++C+TH +G Sbjct: 413 YIHGDADEATLNKIEMLVRAYDPCVSCATHAIG 445 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 117/570 (20%), Positives = 188/570 (32%), Gaps = 115/570 (20%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DPITR+EGH + +V +++ + A RG E+ GR D RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H +A+ A++D ++ A IR ++ DH +H Y L G D+I A Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFIVGPQAP 146 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 A+ + Sbjct: 147 AAERNVIGVI-------------------------------------------------- 156 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESGAVGAVNMERL 257 N +G + +R + ++ A FGGK HP + GG+ + ++ A+ + L Sbjct: 157 NKVGLEVGKRVIATRRRLRELIAYFGGKVIHPVLGLPGGVAKGLKPEDLATFQALAADTL 216 Query: 258 NLVQSIITRTADFI--NNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + Q + D + N + + ++ + ++K AF D Sbjct: 217 DFAQFTLQVFRDLVIANQDYVKLITSDPYTHRTYYMGLVDAANKV-----AFYDGQIRVV 271 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + +G PV + + E V+ P+ + + Sbjct: 272 D----------ADGREYAKFPVQRY-REFIAEHVE--------------PWSYVKFCYLK 306 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P G E+ S I V PLAR +A ++ D Sbjct: 307 PLGWHG--------FEEGPASSI---------YAVAPLARLNVADGMATPLAQKAYDEYF 349 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 SAL + TL R E AA ++ + + +L T T K Sbjct: 350 SALG--GKPVHHTLANHWARVVEILAAAERMVELVSD--PEILSTDLRTIPTAKP----- 400 Query: 496 PTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 G+G EAPRG L H G I L +V T N + R A +L+ Sbjct: 401 ---TVGIGVVEAPRGTLFHHYETDERGLITLANLIVAT-QNNAARIAMSVDRAA-KSLIK 455 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 I ++DPC C+TH L Sbjct: 456 QGQVSDGLMNMIEMAFRAYDPCFGCATHAL 485 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 257 bits (657), Expect = 8e-67, Method: Composition-based stats. Identities = 128/582 (21%), Positives = 199/582 (34%), Gaps = 128/582 (21%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+LV+DP+TRIEGH + V+++D N + +A FRG E +QG +A F++RI Sbjct: 2 SRKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQRI 61 Query: 76 CGVCTGVHALASVYAIEDAI------GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 CG+C H L A++D + GI V A +R + H ++ L Sbjct: 62 CGICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIVP 121 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 + + +DA P + + + P D+ R+ + GQ Sbjct: 122 EMLFGMDA----PPAQRNVLGLIEANP--------DLVKRVVMLRKWGQEV--------- 160 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 I AVFG K N + GG+ ++I E Sbjct: 161 -----------------------------IKAVFGKKMHGINSVPGGVNNNLSIAERDRF 191 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 E L V +I D + F++ +D LS D Sbjct: 192 LNGE-EGLLSVDQVIDYAQDGLRLFY--------DFHQKHRAQVDSFADVPALSMCLVGD 242 Query: 310 IANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 N L +I+ D + V+EF H + + ++ V Sbjct: 243 DDNVDYYHGRL----RIIDDDKH-----------IVREFDYHDYLDHFSEAV-------- 279 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-----GNAMEVGPLARTLIAYHKGD 424 E +S++K P + ++ VGPL R + Sbjct: 280 -----------------------EEWSYMKFPYLKELGREQGSVRVGPLGRMNVTKSLPT 316 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 E+++R + + + TL RA E AA ++ +L+ L Sbjct: 317 PLAQEALERFHAYTKGRTNNM--TLHTNWARAIEILHAAEVVKELLHD--PDLQKDQLVL 372 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKG 543 P W GVG EAPRG L H G I VV TT N + + Sbjct: 373 TPP----PNAWT--GEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMN-RT 425 Query: 544 QIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 E L I + ++DPCL+C+TH LG Sbjct: 426 VRSVAEDYLGGHGEITEGMMNAIEVGIRAYDPCLSCATHALG 467 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 251 bits (641), Expect = 5e-65, Method: Composition-based stats. Identities = 109/584 (18%), Positives = 186/584 (31%), Gaps = 133/584 (22%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++P+TRIEGH + V++++ + + FRG E LQGR + V RICG+C Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICD 60 Query: 81 GVHALASVYAIEDAIGI---KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 H LA+ A++ G + A +R +M + H H +HFY LA D + Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV----- 115 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + RKT + Q + P+ + Sbjct: 116 VPNGTRKTRNVFQIIQDMPEVA-------------------------------------- 137 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNMER 256 L+A+ +R + I + GG+ HP + GG+ ++ + + A E Sbjct: 138 ---------LQAIKIRRNGLDIVSATGGRPIHPTSSTPGGISTELDEETQADLLAKAKEN 188 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + L Q+ I + + D + + G D Y I + G Sbjct: 189 VELAQATIELAVPILEEKI--DLVKTLGYFGDTRHCGIVTKDGDWDVYNGKVRIKDKDG- 245 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVD-HAWYRYPNDQVGRHPFDGITDPWYN 375 + ++ D V E V ++W ++P Sbjct: 246 ------------SIYTEYRNLEYKD--IVAEHVKPYSWLKFP------------------ 273 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD--AATVESVDR 433 +IK + V PL+R + D +++ Sbjct: 274 ---------------------YIKELGYPEGIYRVAPLSRINVCDKMPDAAPLAQGALED 312 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + R E +A ++ S +K+ A Sbjct: 313 FRDRFGYAQYPLLF----HWARLIELLASAEMAVDALEQ-----------DLSGDKFPDA 357 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 T G G EA RG L H D G I +V T N G + + Sbjct: 358 LERTAGEGAGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAM-EMGIQQVAKDYI 416 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + + + + DPCL+C+TH + L +V+V Sbjct: 417 KPGVEVDDKIFNLMEMVIRAHDPCLSCATHTMDSQMR-LATVEV 459 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 251 bits (641), Expect = 6e-65, Method: Composition-based stats. Identities = 114/566 (20%), Positives = 189/566 (33%), Gaps = 120/566 (21%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG + ++ + + +A C +RG E +L+G+ DA V R+CG Sbjct: 2 KIERKVLNRVEGEIELKL-LWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H + +A + I+ + Sbjct: 61 ICG-----------------------------------------HAHLMACVKAIEDAYS 79 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + P + S+ A + +QN L+ F I + Y Sbjct: 80 SEGYPVQLSDKALEIRKLTLMCEM----LQNHLRWFYMYLLPDIVKLEPSIAELY----- 130 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + ++EAL +K+ A+FGG+ PH ++ V G + + +ERL Sbjct: 131 -EPLRGRAWVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAELFLERL 189 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++ + + + L++ G G F ++A + Sbjct: 190 KTF------FESWLLGMPLEEYLSLK---------GRNYLKDIRGDLGRFTEVAIEHNLH 234 Query: 318 SLLMPGG-AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + G+ + +E V ++ Sbjct: 235 EEGRSYDRFITGGELKPLFRSGFF----TREGVS----------------------PFDA 268 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 V +D Y+W KA R+ G E GPLAR L++ G+ R S Sbjct: 269 DKVSENDEFTFFRRNGSAYTWSKAARYSGLPCETGPLARQLVS---GNRVIGSLFRRFGS 325 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 S L R++ R EA + Q ++ L S + Sbjct: 326 ----------SVLVRVVARMDEAVRLFTEAQRTLHRI-------KLDEPSWNRPSVDEKV 368 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 RGVG EA RG L H I G+I Y + PT WN PRD + +G E AL+ Sbjct: 369 FSGRGVGVVEAARGTLIHELEIEGGRIRSYNIITPTVWNLGPRDAEH-LGVAERALLGL- 426 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTH 582 E EI + SFD C C+TH Sbjct: 427 --DSELKAEI--VVRSFDVCSVCTTH 448 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 249 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 112/568 (19%), Positives = 193/568 (33%), Gaps = 139/568 (24%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG + ++ + I A GT R IL+ + D+ + R+CG Sbjct: 2 KITKTILNRLEGEVELKLEY-SKGKIAKAHILGTSNRDFSSILKAKPYLDSIILIPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPD-----NANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H +ASV AIEDA + D A+++R I L + +H+ FY Sbjct: 61 ICGHAHLMASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFYAYF----- 115 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 P ++ + L F W Sbjct: 116 -----------------------MSEIPKLDRNMVDYL----------PFDGEKW----- 137 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGA 251 + +KI A+FGG+ PH ++ V GG+ E A + Sbjct: 138 --------------RRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKS 183 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 + ++ +I + I L+ + ++ + + D LS F Sbjct: 184 -------FCKELLKSIETYIIGISIDKYLSFSK-DELLNHKEGDIGDFIRLS-STFDFFH 234 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 K L G ++ +VD A + +GI + Sbjct: 235 KGIAYKRFLTGGS--------------------IKGYVDAAVFE-----------NGIKE 263 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 DVK DT + +E ++ I + E GPLAR + + ++ +E + Sbjct: 264 ----SFDVKNIDT---KEHEFKKIKEITGAVYNKKRFETGPLARKINS---SNSLFLELL 313 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 + S R++ R E ++ D + ++ S K Sbjct: 314 EEFG----------DSLFLRVMARVDEIVSLTLLIKDALDAI-------DIRKPSYIKP- 355 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 P P +GVG EA RG L H I +G + Y+ V PT WN D + + + Sbjct: 356 PIKEPFTGKGVGIVEAARGTLIHEINIENGFVKDYKIVTPTLWNLGNYDED--MSPAQKS 413 Query: 552 LMNTKMAIPEQPLEILRTLHSFDPCLAC 579 ++ +E +L SFD C +C Sbjct: 414 IVGLSSD-----VEAYLSLRSFDVCASC 436 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 248 bits (633), Expect = 4e-64, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 + + P++G T P Y+ ++ +YSW+K+P + G +EVGPLA L Sbjct: 1 EAPQAPWEGTTIPAYDGW------------SDDGKYSWVKSPTFYGKTVEVGPLANMLCK 48 Query: 420 YHKGDAATVESVDRM------MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 G +T ++ + ++ L ++ + STLGRI+ R LQ ++ L Sbjct: 49 LAAGRESTQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNAL 108 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTT 533 + N+ G+ T + E +GVGF EAPRG L HW I+DG I YQ VVP+T Sbjct: 109 IVNIGKGDYTTFVKPNIQATG---EFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPST 165 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELIS 593 WN+ PR+ +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++S Sbjct: 166 WNSGPRNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVS 225 Query: 594 VQV 596 V+V Sbjct: 226 VKV 228 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 240 bits (613), Expect = 9e-62, Method: Composition-based stats. Identities = 119/588 (20%), Positives = 194/588 (32%), Gaps = 130/588 (22%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS Q ET R + +DP+TRIEGH + VN+ + + NA RG E IL Sbjct: 1 MSAQTETPN------SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKIL 54 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 G + RICGVC H +A+ A++ A G+ P A ++R +M H H Sbjct: 55 VGMEANRMPHITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHA 114 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 + + L G D + LDA A + + + P+ + Sbjct: 115 LSLFVLQGPDLVLGLDADPA----IRNVVGIVQANPEVAK-------------------- 150 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPC 239 +AL + +++ + GG+ HP V GG+ Sbjct: 151 ---------------------------KALRIRTVGQRLNEIVGGRGTHPVTSVAGGITF 183 Query: 240 AINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDK 299 ++ ++ + ++ E L + + + ++ + + P +GT L ++ Sbjct: 184 VLDSEKRAMLQSLVDEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGTVLDNR 243 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND 359 L G NG PV D V+ VD ++ + Sbjct: 244 VSLIQGNI---------------RAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVGF 288 Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 + G D VGPLAR Sbjct: 289 KKGGLLHD----------------------------------------YRVGPLARINAM 308 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 ++ M+ P TL + + E WA + L N Sbjct: 309 QQFSTEWANREMEEMLKLGGYPCHI---TLFQAYAKLVEMIWAIERADDI---LRDPAVN 362 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASP 538 G + R VG +EAPRG L H I DG + +V T N + Sbjct: 363 GETRVPVKFQG--------GRAVGHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAI 414 Query: 539 RDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 + + A + + K I ++ +DPCL+C+TH +G Sbjct: 415 INRSIEHAA--KSHVIGKSDDQALLNAIEFSIRCYDPCLSCATHAVGA 460 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 239 bits (610), Expect = 2e-61, Method: Composition-based stats. Identities = 111/159 (69%), Positives = 126/159 (79%) Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 LP + STLGR RA E+ WA LQYFFD+LM NLK+G+ ATA+ WEP TWPT Sbjct: 109 KLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTS 168 Query: 499 CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 +GVGF+EAPRGALGHW I + KID YQCVVPTTWNA PRD KGQIGAYEAALM TK+A Sbjct: 169 AKGVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLA 228 Query: 559 IPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 +P+QPLEILRTLHSFDPCLACSTHV+ + G EL+ VQVR Sbjct: 229 VPDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQVR 267 Score = 174 bits (441), Expect = 9e-42, Method: Composition-based stats. Identities = 102/240 (42%), Positives = 135/240 (56%), Gaps = 34/240 (14%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M+ Y+TQG+T++N+GRR+VVDP+TRIEGHMRCEVNI+ NVITNAVS GTM+RGLE+IL Sbjct: 1 MAYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM---------- 110 +GRDPRDAWAFVERICGVCTG HAL S+ A+E+A+GI +PDNAN IR + Sbjct: 61 KGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRKKLPKEALFSTLG 120 Query: 111 ------LATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQ-SLSSWPKSSPGYF 163 L ++W + L +F+ ++ LK+ T+ + +WP S+ G Sbjct: 121 RTAARALESVWAGNTLQYFFD-------RLMRNLKSGDTATANVTLWEPDTWPTSAKGVG 173 Query: 164 FDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP------PEANLMGFAHYLEALDFQREIV 217 F R G N Q +P P + Y AL + V Sbjct: 174 FSEAPRGA----LGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAV 229 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 238 bits (607), Expect = 4e-61, Method: Composition-based stats. Identities = 116/573 (20%), Positives = 185/573 (32%), Gaps = 131/573 (22%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++L + P++RIEGH +N++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C VH LAS A+++ G +VP+ A +R ++ + H H +H + LA D+I Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYI---- 117 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L + ++ G K +EG ++G Sbjct: 118 -----------LGPDYNPALRNVVGLVQANPELAKMAIEGRKIG---------------- 150 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 QR + GGK HP V G G A+ E+ Sbjct: 151 ----------------QRITEET----GGKPIHPVSAVPG----------GMSFALANEK 180 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 ++++ R+ + I + P + + GL + Sbjct: 181 RAELEAMAKRSVE-IARISWPVVMKMMDKYADLVNS-VGLVQSDFV-------------- 224 Query: 317 KSLLMPGGAVINGDFNNV-LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 G NG V +D VQ Sbjct: 225 -------GLTRNGKLEFYDGNVRAIDSGGVQ----------------------------- 248 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWR--GNAMEVGPLARTLIAYHKGDAATVESVDR 433 D G D E YS++K + + VGPLAR I G + + Sbjct: 249 LADFPGKDYLSYIEETAEPYSYMKFTKLKKGNGFYRVGPLARVNIVDSIGTPEADKMLAE 308 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + +L R E A+ + A Sbjct: 309 FRAKYGRVPQQ---SLLYHAARTIEYMAASETALSLLQ---------DSAITDKNVRTAV 356 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 T RG+G EA RG L H + D G I +V T N D + L Sbjct: 357 TGVKNTRGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQSS--QKL 414 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 ++ I + ++DPC++C+TH +G Sbjct: 415 IHGDNVSEGTLNRIEMVVRAYDPCVSCATHAIG 447 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 238 bits (607), Expect = 5e-61, Method: Composition-based stats. Identities = 117/583 (20%), Positives = 200/583 (34%), Gaps = 136/583 (23%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVER 74 + + + P TR+EGH + + ++DQ ++ T RG+E + G+ R Sbjct: 2 TKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIASR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 +CG+C H LAS A+E +IG ++P +A ++R I+ A H +H L D+ Sbjct: 62 VCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANRIHSIALH-NILILPDFY-- 118 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + +K + A + V R+ Sbjct: 119 ---IPGTEKKFNLFANEQPA---------RSVMARI------------------------ 142 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESGAVGAVN 253 + + I A+ GG+ HP+ +GGM ++ + + Sbjct: 143 ---------------VRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADLA 187 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 E L LV + D I N+ + + + P + G ++ V++ + ++ Sbjct: 188 KEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKK-LGYHNQGVMATASMYGSSSL 246 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + + P D WY + DP Sbjct: 247 DDNPTWDFT-------RWKETRPWD--------------WYMGEVTI-------DLEDPS 278 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 Y G T E P + G +EVGP AR AT ++ D Sbjct: 279 YPIGGTTKIGTKANPQMEAC----TGVPTYDGQPVEVGPRARL---------ATFKNFDE 325 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 T + + R E + D L T +G + + + Sbjct: 326 KG------------TFAQHIARQMEYPDCCYTILRCLDNLNT---SGKVLADHIPQGD-- 368 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 G EAPRG+ H A ++DGK+ Y +VPTTWN P + GA Sbjct: 369 ----GSMGWAANEAPRGSNIHLARVKDGKVLWYDMLVPTTWNF-PTCSRALTGA------ 417 Query: 554 NTKMAIPEQPLEI-LRTLHSFDPCLACSTHVLGDDGSELISVQ 595 P +I + ++DPC++C+TH++ + E I Q Sbjct: 418 ---------PWQIAEMVVRAYDPCVSCATHMIVVNEEEKIVTQ 451 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 94/525 (17%), Positives = 165/525 (31%), Gaps = 121/525 (23%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V++P++R+EGH + + +++ + T RG E + GR + V RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H LASV AI+ A G+++P+ A +R +M H H +HFY LA D++ DA Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFVLGPDA 122 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 A + ++ DV + + GQ Sbjct: 123 DPAIRNIVGVIDKAP------------DVAKQAIALRKFGQ------------------- 151 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 +IV+ GGK HP + G +E + +++ Sbjct: 152 -----------------KIVEAV---GGKAIHPVTGIPGGQAKRLTEEERDELLKDADQM 191 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 +N + +G + + + Sbjct: 192 IEYAKNGVELIKQLNEQYMEQIKTLGVIDTYYLGLVKDGKHNFY------------DDTL 239 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L P G + P + ++ + E+V P++ + P+Y Sbjct: 240 RFLSPDG----KEKVEFKPEEYLNY--IGEYV--------------VPYNYVKHPYY--- 276 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 K + VGPLA + E + Sbjct: 277 ---------------------KKVGYPEGVYRVGPLAMLNVCDEMETPLAEEYRKEFLEI 315 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 P + +L R E A K + + +++ + P Sbjct: 316 FGFPANQ---SLAYNHARLIELVEACEKAKILLED----------NDITSDDIKADVEPK 362 Query: 498 ECRGVGFTEAPRGALGH-WAAIRDGKIDLYQCVVPTTWNASPRDP 541 GVG APRG L H + +G + +V TT N + Sbjct: 363 AGNGVGVVYAPRGVLIHNYETDENGIVVKANMIVATTHNVPTMEK 407 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 235 bits (599), Expect = 4e-60, Method: Composition-based stats. Identities = 91/285 (31%), Positives = 138/285 (48%), Gaps = 24/285 (8%) Query: 275 MIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV 334 MIPD I G G +++G F + + ++ MP G V Sbjct: 1 MIPDTKIIAPAYTDALHFGKGCGR--YVAWGVFERPSMEPTDR--YMPAGVVW-----EN 51 Query: 335 LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQL---NE 391 L V D ++E+V H+WY +D +P +G+TDP Y V GS+ Sbjct: 52 LNVTDPDEALIKEYVGHSWYVGDSD---LNPVEGVTDPEYTSYYVPGSEHEENGHMIGTV 108 Query: 392 QERYSWIKAPRWRGNAMEVGPLARTLIAYHKG---DAATVESVDRMMSALNLPLSGIQST 448 +RY+W K P + G ME GP +R L AY +G + V++++ + + L L + +QST Sbjct: 109 NDRYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADLGLTIPDLQST 168 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 LGR+ R E + A + + D+L+ +K G+ + RG G EAP Sbjct: 169 LGRVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPER------LSGRGTGMWEAP 222 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 RGAL H + +GKI+ YQ ++PTTWN +PR+ +G G E ALM Sbjct: 223 RGALLHTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 233 bits (593), Expect = 2e-59, Method: Composition-based stats. Identities = 104/563 (18%), Positives = 178/563 (31%), Gaps = 118/563 (20%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + + P+TRIEGH + ++D+ + ++ RG E ++G+ + V RI Sbjct: 2 GQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LAS A++ G+ P +R +M A D ++HFY LA D++ Sbjct: 62 CGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMGP 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 D+ R +A++ + + L+KF Sbjct: 122 DSDYGV-RNVIGVAKAHPELAGRVVRMRYATKMILEKF---------------------- 158 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESGAVGAVNM 254 GK HP+ +VGG + ++ Sbjct: 159 ----------------------------AGKAIHPHAGVVGGFSRVLLEEDRREFLGKMK 190 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 E L I + + ++G N + IGT + Y Sbjct: 191 EMLEFALFTIDFAKTQVFPKYLDAVASLGVINTGF--IGTVDDHGALNLY---------D 239 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVD-HAWYRYPNDQVGRHPFDGITDPW 373 G+ L+ P G+ ++ D + L + E V+ H++ G+ P+ + Sbjct: 240 GKIRLMKPDGSFVDFDPQDYL-------DYLGEHVEPHSY--------GKFPYARCWNEG 284 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 ++ ++ PR LAR +A ++ Sbjct: 285 FSLDPLQ--------------------PR---GIYRANTLARINVADKMATPRAQAELEE 321 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 P TL R E +A + + Sbjct: 322 FREKFGRPAQF---TLLHHWARLIEEVYACEHAIELLED----------PEITDPNVRAK 368 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P RGVG EAPRG L H G + +V TT N P A L Sbjct: 369 VEPKAGRGVGCLEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQAA--RTL 426 Query: 553 MNTKMAIPEQPLEILRTLHSFDP 575 + + +I + ++DP Sbjct: 427 IQRGVVDETILNKIEMAVRAYDP 449 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 232 bits (592), Expect = 3e-59, Method: Composition-based stats. Identities = 140/732 (19%), Positives = 232/732 (31%), Gaps = 161/732 (21%) Query: 4 QYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQ-NVITNAVSCGTMFRGLEIILQG 62 + Y + + ++++PI RI+ + +V + N +T+A + MFRG EI ++ Sbjct: 2 ASSSPYYFTFDWTKPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRN 61 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA--TLWCHDHL 120 + D R CG+C H A E A G P + I+LA +D Sbjct: 62 KPGPDVIMLSSRECGICGEHHQFIERIAQEMAQGGNAPPPLG-LETIILANDAAMTYDAT 120 Query: 121 VHFYQLAGMDWIDVLDALKAD-PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL 179 H L G DW + + P + E+AQ V + F G Sbjct: 121 AHLTALGGPDWSSLFFKVAGYFPSQIYEIAQQTP---------LSKVAQESQAFPMGAPT 171 Query: 180 GIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPC 239 + G L + A++LE R + + ++ + PHP +V G Sbjct: 172 QLEMAGVKLKTVSDLMDALVPIIGAYFLEGAYSWRILHEAELLYYLRVPHPITMVPGGIG 231 Query: 240 AINI--------DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE 291 A M+++ + + + AD+ N I ++K Sbjct: 232 VPATVENLQRYFQRMVDGTAWLMKQMAVYEYLTLFLADYNNTFGIQ-----ALYDKLNGT 286 Query: 292 IG---TGLSDKCVLSYG---------------------AFPDIANDFGEKSLLMPGGAVI 327 +G G +SYG + +G ++ PG + Sbjct: 287 LGFAEEGNRPGNFVSYGQSDVSEAPSVTPSSTSVMPYDGTYENMGAWGRARVVKPGLVIQ 346 Query: 328 --NGDFNNVLPVDLVDPQQ-VQEFVDHAWYR------YPNDQVGRHPFDGITDP------ 372 + ++ L+D ++EFV+ ++Y N +V DP Sbjct: 347 PNSNSPPQLVTNSLIDINLGIREFVESSFYTPWYENGSFNSEVPSSVSGIEEDPIGNKVS 406 Query: 373 WYNPGDV---KGSDTNIQQLNEQERYSWIKAPR---WRGNA--------MEVGPLARTLI 418 +Y+P + YSW +PR ++ + +E P+A Sbjct: 407 YYHPWRKWTMPNPQPRPVPMAYPAPYSWAVSPRIVPYQNHKPITNLFYNVEADPMAVMYA 466 Query: 419 A----------YHKGDAATVES---VDRMMSALNLPLSG--------------------- 444 Y + E + M + LP Sbjct: 467 QVLQPQAPTPIYTSSYPSGFEVSYNSNEMSATFYLPTVNSPRISLPPEFQQGSEIEFKYV 526 Query: 445 ----------IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK----W 490 + + + R+ RA EA + + +T LK G +S + Sbjct: 527 APYALSGGKIVTNAIERMRARAFEAGLDGMGMWIAWMSAITYLKKGMTQVSSMPPSSWTY 586 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLY-----QCVVPTTWNASPR------ 539 + T GVG EAPRGA H G Q + PTT N+ PR Sbjct: 587 KSNTNTGVALGVGMKEAPRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYD 646 Query: 540 ---------DPKGQIGAYEAALMNTK-MAIPEQP------------LEILRTLHSFDPCL 577 P G +E LM +P P E +TL SFDPC Sbjct: 647 DGIQTIKPASPTHGAGTFEEVLMGNPDYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCF 706 Query: 578 ACSTHVLGDDGS 589 C H++ +G Sbjct: 707 VCGVHMVLPNGR 718 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 229 bits (584), Expect = 2e-58, Method: Composition-based stats. Identities = 109/444 (24%), Positives = 175/444 (39%), Gaps = 75/444 (16%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+VV P R+EG + +++ DQ +T A +FRG E I+QG++P DA + RICG Sbjct: 3 RIVVGPFNRVEGDLEIKLD-TDQGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++AS A+ D + + +P N + N++LA D L HFY D+ + + Sbjct: 62 ICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGIYS 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + S+ S K+ G V L E L G W H P Sbjct: 122 NEPW-------FDSVESRFKAQKGSAAKVM--LPARSEFLHLMGIMAGKWPHSLSLQPG- 171 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 G A +EA +E +++ A+ ++ +++ +G+ N + Sbjct: 172 ----GSAKPIEA----QERIRLLAILAS---FRKFLEH-TLFGDDLEAIAELGSWNELQN 219 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 + +DF + + D L + G + LSYG +PD Sbjct: 220 WREKHDWQH-SDFTRFLHLSDQLHLAS---------MGRATDQFLSYGNYPD-------- 261 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 P G + + V D + + E + ++W + N V HP G T+P Sbjct: 262 ----PQGGLFKAGASFAGAVTDFDQKGITEDLAYSWMQSVNGPV--HPAAGNTEPS---- 311 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 L+ + YSW KAPR MEVG LAR LI G + V R Sbjct: 312 -----------LDNEAAYSWCKAPRLNRQVMEVGALARQLIN---GHPLAADLVSR---- 353 Query: 438 LNLPLSGIQSTLGRILCRAHEAQW 461 + RI+ R A++ Sbjct: 354 ------NGANVESRIIARLLRARY 371 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 229 bits (583), Expect = 3e-58, Method: Composition-based stats. Identities = 115/596 (19%), Positives = 190/596 (31%), Gaps = 130/596 (21%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ ++P+TR+EGH + + ++D+ + +A FRG E L+G + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVC VH AS A + G++ + A IR + L + DH Y L D++ ++ Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFVVGIE 124 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A A+ + + K+ LKK ++ G HP LP Sbjct: 125 ADPAERNLVGLIKKVGVDVGKTV----------LKKRFAAVKVLEMLGGKPIHPVAGLP- 173 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 GG I DE + A+ E Sbjct: 174 --------------------------------------GGWSKRITEDERKEIEALAKEM 195 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLS-YGAFPDIANDFG 315 + L + + D I L + + + D ++ Y + + G Sbjct: 196 VELGELTLQVFEDVILKNEKLLELITADYYRVVVNYLGTVDDAGKVNYYDGWQVGIDTKG 255 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + G +N + E V P+ + P++ Sbjct: 256 NEVFRFKGKDYLN---------------YIAERV--------------VPWSYVKMPYFK 286 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 KG YS VGPLAR I E+ ++M Sbjct: 287 QLGWKG----FVDGEGTSLYS-------------VGPLARCNIGDM-NTPKAKEAQEKMF 328 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 L I + RA E AA ++ ++ Sbjct: 329 DVLK--ERPIHYIMAYHWARAVELLNAAERVLELAQD----------PEITSPDVRAELG 376 Query: 496 PTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRD----PKGQIGAYEA 550 GVG EAPRG L H +G + +V TT N +P + Q E Sbjct: 377 EVTGEGVGIIEAPRGTLIHHYKTDENGIVTDANLIVATTHNHAPINIAIKKAAQHFIQEN 436 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTH-----------VLGDDGSELISVQ 595 +N K+ +EI +D C AC++H V +G + +++ Sbjct: 437 KEINDKLL---NYVEI--AYRPYDICQACASHALPGRYPLEVLVYDSEGELIKTIR 487 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 224 bits (571), Expect = 7e-57, Method: Composition-based stats. Identities = 110/568 (19%), Positives = 174/568 (30%), Gaps = 156/568 (27%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 ++ I +IEG + N + + V R +E IL+G+ DA R+CG+C Sbjct: 1 MIKIIEKIEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAFDALVINPRVCGIC 59 Query: 80 TGVHALASVYAIEDAIG-IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 H +A+V A+E + + D A IIR + L +H FY + L Sbjct: 60 GHAHLMATVQALESCYDNLILSDKAKIIRELTLNFELIQNHFKWFYLTLYPLFGKKQQIL 119 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 KA ++P V G + H Y Sbjct: 120 KA-------------TYPSQLMSKAIAV----------------IGGQYPHTSY------ 144 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 A+ GG + C I + V + L Sbjct: 145 ----------------------AIVGG-----------VACEITEIDLIKVQHYIAQTLK 171 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 V+ + + V + A ++ +EI + + +L YG D FGE S Sbjct: 172 FVEQNLLKVES---EVFLKTEDANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENS 228 Query: 319 LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGD 378 G +V +N+ VD+ + Q F + ++ Sbjct: 229 FFKKGKSVKTKVTHNISLVDVKESQITSSFAKNVSFK----------------------- 265 Query: 379 VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSAL 438 EVGPL+R +I + Sbjct: 266 --------------------------DKYYEVGPLSRAMINKTPL-------------II 286 Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 ++ S RIL R +E + K+ + EP+ ++ Sbjct: 287 DVHKKYGDSIFSRILARIYEISQLLEHSRGLIKKI---------DLSQPSYIEPSIDISK 337 Query: 499 CRGVGF--TEAPRGALGHWAAIRDGKIDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMN 554 G G+ EA RG L H + G I Y+ + PT WN S R+ G L + Sbjct: 338 LSGSGYSAVEAARGTLIHRVELESGIIKNYEIITPTQWNLSGGTRENHGVSQRAMVGLSD 397 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH 582 K+A SFD C C+TH Sbjct: 398 VKIAE--------LVFKSFDVCSVCTTH 417 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 102/564 (18%), Positives = 178/564 (31%), Gaps = 146/564 (25%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 +++ I +IEG + + + + + T R +E IL+G+ DA R+CG+C Sbjct: 1 MIELIEKIEGEAKLNFSFAGEEIDFVDIEFMTA-RNIEKILEGKSALDALVINPRVCGIC 59 Query: 80 TGVHALASVYAIEDAI-GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 H +A+V A+ED I++ A IIR + L +H FY + + L Sbjct: 60 GHAHLIATVKALEDCYENIEISKKAEIIRELTLTFELIQNHFKWFYLTMRPLFGKKQEVL 119 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 KA T +A++++ + G + H Y Sbjct: 120 KATYP-TQLMAKAIAVF----------------------------GGQYPHTSY------ 144 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 A+ GG + C I + + E + Sbjct: 145 ----------------------AIVGG-----------VVCDITEIDIIKIKHYIEETIK 171 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 ++ + + AD + ++ + + + N +I + K L +G D FGE S Sbjct: 172 FFETNLVQ-ADTKDFLVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENS 230 Query: 319 LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGD 378 G + + + V+E D + Sbjct: 231 YFTK------GKSHKTITTHNISIDYVKE----------QDNLN---------------- 258 Query: 379 VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSAL 438 S K ++ EVGPLAR +I Sbjct: 259 -----------------SLAKNVTYKDKYYEVGPLARAMINKVPLVK------------- 288 Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 + + RI+ R E + +KL +L+ S + Sbjct: 289 DSHRRYGDNIFSRIIARVCEIPQLLNHSKELLEKL-------DLSEPSYIEPNIDISQIN 341 Query: 499 CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 G EA RG+L H + +G I Y+ + PT WN + +G + A++ K Sbjct: 342 ASGESAVEAARGSLIHKVELENGIIKNYEIITPTQWNLGNGTREN-LGVSQQAMVGLKDV 400 Query: 559 IPEQPLEILRTLHSFDPCLACSTH 582 +FD C C+TH Sbjct: 401 K-----TAELVFKTFDVCSVCTTH 419 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 223 bits (567), Expect = 2e-56, Method: Composition-based stats. Identities = 102/571 (17%), Positives = 182/571 (31%), Gaps = 164/571 (28%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DP+TR+EG R V + V + R E +L+G+ P V RICG+ Sbjct: 4 VRIDPLTRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVARICGL 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + L +V A E +KVP + +R + W H H + L D+ + Sbjct: 64 CPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYE----- 118 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 F ++ ++ +E G Sbjct: 119 ---------------------RESFLELMREKRELLEAG--------------------- 136 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 L ++ I + GG++ HP +NI G + R+ Sbjct: 137 -----------LQIRKTGNSIIELLGGRHIHP----------VNIRVGGFYKIPSAPRIE 175 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 + I F + + L++ +P++ + Sbjct: 176 NTLAEIESALPFAEKAL-----------------------ELFLNF-DYPEMEKE----- 206 Query: 319 LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGD 378 + + + + E + G + + ++ Sbjct: 207 -------------RIFVSLGNHEVYPITEGSAVS-------SEGMNIEKNEYEEYFVEYQ 246 Query: 379 VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSAL 438 + S +L + + Y EVG LAR + K E V+ ++ A Sbjct: 247 LPHSTALYSRLKDGKAY-------------EVGALARIYNNFGKLPQDLREKVEGVLPAR 293 Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW--P 496 N S I+ R E +A + ++ +K E EP Sbjct: 294 NPFKS--------IIARIVEVIYALREAKHILEKF--------------EGGEPHVEYSI 331 Query: 497 TECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 E GVG TEAPRG L H + G++ V PT+ N + E L+ Sbjct: 332 REGEGVGITEAPRGILYHRYRVNSKGEVVFANIVPPTSQNQRAME--------EDVLLGL 383 Query: 556 K-MAIPEQPLEILRTLHSFDPCLACSTHVLG 585 K + + + + + +FDPC++C++H L Sbjct: 384 KTLKNGDIRVLAEKLVRNFDPCISCASHFLE 414 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 222 bits (565), Expect = 3e-56, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 183/570 (32%), Gaps = 150/570 (26%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ ++P++RIEGH + + ++ + NA T FRG E IL G + V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C +H A++ A + G++ D A I+R ++L + DH + LA D++ + Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIEDHTLSLLALALPDFLSPEE- 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 ++ ++ E G+ + + GY Sbjct: 121 --------------------------RNIFGVIRNLGELGRELLRKRGY----------- 143 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMER 256 V+I + GG+N HP + GG A +E G + + E Sbjct: 144 ------------------AVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERYSREL 185 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 L+L + + + ++G GL + A G Sbjct: 186 LDL-------------------GYRMVEVLEAALDMGDGLELR------AATLGTEKKGL 220 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 +L V + + VL + + +W Sbjct: 221 VNLYDGEQVVKDEEGKEVLRFSGKEYADIITEKSLSW----------------------- 257 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 + + IK VGPLAR + E V Sbjct: 258 --------------SYSKLTEIKP--LGEKLYVVGPLARL--KTAELTPKASEIVKTYGV 299 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 + NL + RA E +AA +L + + Sbjct: 300 SNNLLYN--------HFARAVEIIYAAERLLELSQSYRGG------------RIQNEPQK 339 Query: 497 TECRGVGFTEAPRGALGHWA-AIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 GVG EAPRG L H G + +V TT N R +G +T Sbjct: 340 VAGEGVGIVEAPRGTLIHHYWTDEKGIVRGSNLIVATTHNV--RAINHVVGKVAERASDT 397 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 + ++ + +FDPC+AC+TH + Sbjct: 398 R----NLAEKVEVAIRAFDPCMACATHAVN 423 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 204 bits (519), Expect = 6e-51, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 185/566 (32%), Gaps = 139/566 (24%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R ++ I +IEG + + ++ ++ G +RG+E IL G+DPRDA R+C Sbjct: 3 RTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGF-YRGIEEILVGKDPRDALVITPRVC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H + +A + ++ Sbjct: 62 GICN-----------------------------------------HAHLIAAVRALENGY 80 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A S A+++ + S L+ ++ + IF N L Sbjct: 81 ASAGWEVVLSPKAKAIREFTLSC--------ELLQNHIKWMYMTIFPN---------LER 123 Query: 197 EANLMGFAHY-LEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 + +Y ++A F I K A+F G+ PH ++ V GG+ C + ++ Sbjct: 124 YLKIESSENYAVKASYFSTTITKALAIFAGQWPHSSYAVPGGVTCDPTQLDIIQAQSLLE 183 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 E + + ++T + L+I + G +L + Sbjct: 184 ECVRFFEQMLT-------GCTLEAYLSIESVSSLHHIEGDFGKLLHLLGSNGMAKKGQSY 236 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 ++ ++ + + V VD + V E Sbjct: 237 -DRFIVFADSPLSPAGKSIATSVSKVDTKYVVE--------------------------- 268 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +++ S KA ++ EVGPLAR +++ Sbjct: 269 ----------------SEQKGSMAKAVSYKNRMYEVGPLARGMVSKEP------------ 300 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 NL S + R+ R HE K + + + + L+ Sbjct: 301 -IVKNLHKRYKDSMMTRVFARIHEVAQLLEKNREMLKSIRVDEPSCTLSDTLKLY----- 354 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 E G G EA RG+L H + +GKI Y+ + PT WN S D K + G A++ Sbjct: 355 ---EFEGTGTVEAARGSLIHRTTVSNGKIANYEIITPTQWNLSHGDEKEK-GIAVKAMVG 410 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACS 580 + + E +FD C C+ Sbjct: 411 S-----QSMEEADFIFRTFDVCSVCT 431 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 192 bits (488), Expect = 3e-47, Method: Composition-based stats. Identities = 101/570 (17%), Positives = 179/570 (31%), Gaps = 154/570 (27%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R + VD I+R+EG +VN+ + + + ++ R + L GR R+ RIC Sbjct: 4 RSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITARIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C + + S+ AIE A ++V + ++R + + + H++H + LA D++ Sbjct: 64 GICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLG--- 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 +S D + +K ++ +LG Sbjct: 121 -------------------YESVISMAEDFPDEVKLALDLKRLG---------------- 145 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNME 255 I A+ GG+ HP VGG + + E Sbjct: 146 --------------------NDITALIGGREVHPVTPRVGGFSDLPSQEALKQA----AE 181 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 RL A + + +PD +S+ F +A Sbjct: 182 RLEAALEGGMAAAKLVGGLSVPD-----------------------MSW-DFTSVALSDK 217 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 ++ + G V + + +DP +EF+ A + + H ++ + Sbjct: 218 KEYAVNGGRLVSDNGLD-------IDPADYREFLHEA---HVSPSHALH--SSLSGNSFL 265 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 G + + N R G A E L Sbjct: 266 VGPLARVNLNFD--------------RLSGKAKEAAALT--------------------- 290 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 + S R+ E + + D L EK Sbjct: 291 GVSFPSKNPFHSVDARVA----ELVHSIEESLEIIDAL---------GKPVPEKNGYIVR 337 Query: 496 PTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P G TEAPRG L H + G ++ V PT+ N + + E + Sbjct: 338 P--GCGAAITEAPRGILSHSYCFNELGVVEEADIVAPTSRNVKNMEEGLRRFIPE----H 391 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 ++ E L+ + ++DPC +CS H L Sbjct: 392 LDLSDEELTLKCEMYIRNYDPCFSCSVHFL 421 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 191 bits (484), Expect = 8e-47, Method: Composition-based stats. Identities = 82/227 (36%), Positives = 112/227 (49%), Gaps = 15/227 (6%) Query: 155 WPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR 214 W +S ++++RL+KFV+ G+LGIF NGYWG+ YKL P NL+ HY +AL+ QR Sbjct: 29 WTRSMHNTSTEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQR 88 Query: 215 EIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 ++ ++ +FGGK+PHP +VGG+ I+I + + L + + R FI Sbjct: 89 DLGQMMTIFGGKDPHPQSLVVGGVTSIIDIKDPA--------KRQLFKGLALRVRAFIKG 140 Query: 274 VMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNN 333 +P + + K G G K L YG FP D L PGG V NGD Sbjct: 141 AYMPGMYMLSEMYKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDLTK 200 Query: 334 VLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 V DP V E V HAWY P + HP+DG T P K Sbjct: 201 VTD---FDPALVTEDVTHAWYAAPAPE---HPYDGTTTPTIQTLSQK 241 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 188 bits (476), Expect = 7e-46, Method: Composition-based stats. Identities = 85/456 (18%), Positives = 151/456 (33%), Gaps = 119/456 (26%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + ++ I ++ I +A FRG E IL+ + D R+CG+C H Sbjct: 9 LNRVEGEIELKL-IWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCGICGHAH 67 Query: 84 ALASVYAIEDA-----IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 +A+ A+E+ I+V A IIRNI L+ +HL FY D++ AL Sbjct: 68 LIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFLKFNKAL 127 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + ++ +++ K + G W H Y +P Sbjct: 128 E-----------DFYPIKGKKWRKAVELSSKIVKVIA------IFAGQWPHTSYSVP--- 167 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 GG+ C E +E ++ Sbjct: 168 ------------------------------------GGVMCEPTQTEI-------IEAIS 184 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 +V S++ + + + I + L+I + + L + A G K Sbjct: 185 IVDSVLEYFEEDVIGMKIDEYLSITNLKEFLDKSEGDLK--------TIIEEAMKLGFKD 236 Query: 319 LLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDH----AWYRYPNDQVGRHPFDGITDPWY 374 + ++ L V ++P + E + ++ ++ F P + Sbjct: 237 IGKA--------YDRFLTVCNINP-FISEGITRRKKCSFDINKVKEIETFSFLEKGKPKF 287 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + + +YSW KAPR+ G E GPLAR + K Sbjct: 288 S----------------KRKYSWAKAPRYEGKPFETGPLARRINNEDKL----------- 320 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 LNL + + RI R E ++ + Sbjct: 321 --FLNLVKTFKGYYIPRIWARVDEIGKLLLAVKEYL 354 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 178 bits (451), Expect = 6e-43, Method: Composition-based stats. Identities = 66/167 (39%), Positives = 98/167 (58%), Gaps = 7/167 (4%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R ++DPITRIEGH+R E+ + D V+T+A G FRG+E+++Q R P DA V+RICG Sbjct: 3 RSIIDPITRIEGHLRVEMEV-DNGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA S A E A IK+ +NA IIRNI+ + H H++ FY LAG D+++ L+A Sbjct: 62 VCPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 L A+ +L S + ++ D+ +K +G F++ Sbjct: 122 LNANIATAYDLVSSAGTGCQT------DLTALAQKLTSSPTMGSFQS 162 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 171 bits (433), Expect = 7e-41, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 3/159 (1%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +++ +DP+TR+EGH + ++ +ND + ++ RG E QGR + +I Sbjct: 2 AKKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPKI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC G H +AS A + G+ P A IR + H H++HF+ LA D++ Sbjct: 62 CGVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPGP 121 Query: 136 DALKADPRK---TSELAQSLSSWPKSSPGYFFDVQNRLK 171 +A EL + + GY +Q + Sbjct: 122 EAGPGKRNILGLVDELGKGAVRRVLQNRGYAQKIQGLIA 160 Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 79/235 (33%), Gaps = 29/235 (12%) Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN------------AMEVGPLARTLIAYHK 422 GSD +S++K P R V LAR +A Sbjct: 255 TMAQFDGSDYLEHLAETVLPWSYMKFPYLRDKGWHGLIDGADSGVYRVNSLARLNVADGM 314 Query: 423 GDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNL 482 E+ + M + + I +TL R E AA L L + + + Sbjct: 315 ATPLAQEAYETMRAFYG--GTPIHNTLAFHWARLVELMQAAEALV----DLSQDPEVTDT 368 Query: 483 ATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDP 541 S + P GVG EAPRG+L H +G + +V T N + Sbjct: 369 NVRSLPEGRP------GEGVGVVEAPRGSLIHHYTTDANGLVKTVNLIVATVQNNAGMGM 422 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + A L+ I ++DPCLAC+TH L G + V++ Sbjct: 423 SVKKAA--QGLIQDGAPDEAVLDMIEMGYRAYDPCLACATHAL--PGESDLEVRL 473 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats. Identities = 96/570 (16%), Positives = 159/570 (27%), Gaps = 156/570 (27%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + V + R+EG ++ I D + + R E L+GR+P V RICG+ Sbjct: 7 IEVPILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAVARICGI 66 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + A + A I + +R +M W H+ + Sbjct: 67 CPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIES---HYLHVH----------- 112 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + +R+ Y P E Sbjct: 113 ----------------------------------LLAAPDFLGYRSAIEMAKDY--PKEV 136 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMERL 257 + + Q I + GG++ HPN + VGG A + E A+ Sbjct: 137 --------VRGVKLQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHALIP------ 182 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++ + D + V S +FPD F Sbjct: 183 -KLKDALKEAKDVVEWV----------------------------STLSFPDTTIPFKMV 213 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 SL P + GD + + E+ DH + H Sbjct: 214 SLSHPTEYPVFGDDVITSDGEKF---HISEYDDHFREFHAPQSTALH------------- 257 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 + G + +GPL R + + K E Sbjct: 258 ----------------------STTVDGQPILLGPLPRINLNFDKLPKHIQEMAHATGVK 295 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 ++ ++ RA E WA + ++ N + Sbjct: 296 W-----PSKNMFHSVVARAIEGYWAIERAL----QVCENYSYTDTPCVDYTV-------K 339 Query: 498 ECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 G EAPRG + D G + + PT+ N + +I AL N Sbjct: 340 AADAWGAVEAPRGIQIDHIKVNDQGLAEKIRISAPTSQNLPCIEADLRI-----ALENFG 394 Query: 557 MAIPEQ--PLEILRTLHSFDPCLACSTHVL 584 + PE L + ++DPC++CS H L Sbjct: 395 LDKPEDDIRLHAEMVIRNYDPCISCSAHFL 424 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 11/194 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + + +DP+TRIEGH R + ++D+ ++ + T RG E GR + + R C Sbjct: 3 KTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTARTC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS A ++ + +++P A +R ++ H + F+ LA D + +D Sbjct: 63 GICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLGMD 122 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A P + + + + + G L++F G QL G HP + +P Sbjct: 123 A---APEQRNIFGLAAARPEVAKEGIA------LRRF--GQQLIERLAGKRIHPDWVVPG 171 Query: 197 EANLMGFAHYLEAL 210 + A+ Sbjct: 172 GVSRPLSRENGAAI 185 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 88/274 (32%), Gaps = 44/274 (16%) Query: 353 WYRYPNDQVGRHPFDG-----ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407 W + +DG + Q + E S++K+P R Sbjct: 224 WLALAGEAGQLEYYDGPLRLLDQQGEELFSEADPLRYQQQLAEQSEADSYLKSPYHRPQG 283 Query: 408 ME-----VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWA 462 E VGPLAR A G E++ P + S+ R E Sbjct: 284 PEAGLYRVGPLARLNAARRCGTPLADEALAAFRELS--PQGPVTSSFHYHYARLIEIIHG 341 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDG 521 K+Q T + GVG EAPRG L H I G Sbjct: 342 LEKIQQLLAD----------DTIYDPRVRATAGANAPEGVGICEAPRGTLIHHYRIDEQG 391 Query: 522 KIDLYQCVVPTTWNA----------------SPRDPKGQIG-AYEAALMNTKMAIPEQPL 564 +I ++ T N+ + G+ G E+ + I E L Sbjct: 392 RISAVNMMIATGHNSLAIQRGLKQAARAFINGNGENDGESGKRAESREIAENKEIREGLL 451 Query: 565 E-ILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 I L +DPCL+CSTH L G ++V++R Sbjct: 452 NRIEAVLRCYDPCLSCSTHAL---GQMPLAVELR 482 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 65/128 (50%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 + N ++ V+ +TR+EGH +++ + + R E +L+GR +A Sbjct: 1 MANKTVKIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHI 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 RICG+C+ H+LAS+ A EDA+G+ + +R ++L + H++H Y LA D Sbjct: 61 TSRICGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDV 120 Query: 132 IDVLDALK 139 + V + Sbjct: 121 LGVPSFVP 128 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 66/404 (16%), Positives = 117/404 (28%), Gaps = 55/404 (13%) Query: 221 AVFGGKNPHPNWIVGGM-PCAINI-------DESGAVGAVNMERLNLVQSIITRTADFIN 272 ++F + H + G+ C ++ D G +L + + Sbjct: 53 SIFEAQ--HITSRICGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVL 110 Query: 273 NVMI---PDALAIGQFNK--------------------PWSEIGTGLS-DKCVLSYGAFP 308 +V + PD L + F +I G G F Sbjct: 111 HVYLLAAPDVLGVPSFVPLVKTHNAVVRRALRMKKLCNDVCDILVGRHVHPISAIVGGFT 170 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNV---LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHP 365 + ++L ++ + + + D + E+V +D Sbjct: 171 KLPRPKDLDAMLEMLESMRDDMAETLALAKTLQFPDFYRETEYVG-----LVSDDEEYPL 225 Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQ-ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD 424 G D G G Q NE + S K +W ++ VG LAR + K Sbjct: 226 LMG--DVGSTDGKRLGKKDYRQATNEFIDPRSSAKFAKWSRDSYLVGALARFNLNSDKLH 283 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 + + + + + E L N N + Sbjct: 284 PTAKAIAEELGLKPICHNPYLN-----TVAQVVEIVHCYEHAIDLIKDLKKNGINYDEEI 338 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGH-WAAIRDGKIDLYQCVVPTTWNASPRDPKG 543 + GVG E PRG L H + +G I+ C++PT N + + Sbjct: 339 VVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTDSNGIIEQANCIIPTNQNIANIEYDM 398 Query: 544 QIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 E E L++ + ++DPC++CS H L Sbjct: 399 MKLLPEI----LDQTKEEITLKMEMLVRAYDPCISCSAHYLNVK 438 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 60/128 (46%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N R L V +TR+EG V + D V + ++ R E L+GR + Sbjct: 1 MNPEIRTLTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDI 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 R+CG+C + +++ AIEDA G+ + +R ++ W H H +H Y L D+ Sbjct: 61 TARVCGICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDF 120 Query: 132 IDVLDALK 139 + DA+ Sbjct: 121 LGYPDAIS 128 Score = 94.5 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 106/325 (32%), Gaps = 31/325 (9%) Query: 262 SIITRTADFINNVMIPDALAIGQF-NKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320 S +F+ LA+ + N+ +IG + G F + L Sbjct: 128 SFAKDHREFLER-----GLALKKAGNRLMEQIGGRAIHPINVRLGGFYSVPRRDELGPLA 182 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 ++ + V D V EF DH + R+ + Sbjct: 183 EELRRALDDALFTLRSVAEFDFPDV-EF-DHEFLALTQPD--RYAIEDGAIVRSAGPAFP 238 Query: 381 GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNL 440 +D + Q +S G GPLAR + +A + R +A Sbjct: 239 VADFSEHVREMQVPHSTALHATLDGERYLTGPLAR-----YSLSSAALSPTARQAAAQAG 293 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR 500 + ++ I+ RA E +A + + + + + Sbjct: 294 LGAQCRNPFRSIVVRAVEVVYAIEEALRIIE---------DYERPARPFVD--VPARAGV 342 Query: 501 GVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G G +EAPRG L H I DG + V PT N + + ++G A N + Sbjct: 343 GHGVSEAPRGLLYHRYEIGDDGLVSAATMVPPTAQNQAAIEY--EMGRLVAG--NLTLDD 398 Query: 560 PEQPLEILRTLHSFDPCLACSTHVL 584 E R++ + DPC++CS H L Sbjct: 399 AELTSLCERSIRNHDPCISCSAHFL 423 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 60/121 (49%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + + +TR+EGH +++ + ++ + R E++L+G A RICG+ Sbjct: 9 INIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGI 68 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H+LA++ A+E A+ I P A ++R + + H +H + LA D+ + L Sbjct: 69 CSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVL 128 Query: 139 K 139 Sbjct: 129 P 129 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 71/220 (32%), Gaps = 17/220 (7%) Query: 364 HPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG 423 +P G + +D + +S K R N+ G LAR YH Sbjct: 223 YPAIGGQLVSSDGITRDENDYLLMTNEYTRDFSTSKFTRLSRNSSAAGALARFNNNYHLL 282 Query: 424 DAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLA 483 R + + + + E + ++ ++K Sbjct: 283 HPNAQAVAARFGLQPVCHNPFMNN-----IAQLVECVHILEDAEELIG-MVMDMKGEETK 336 Query: 484 TASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPK 542 T P G EAPRG L H+ D G + C++PTT N Sbjct: 337 CHYT--------PQAGAATGAVEAPRGILYHYMETNDEGMVVRADCIIPTTQNNGNIYDD 388 Query: 543 GQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 Q A E L+ E L+ + S+DPC++CS H Sbjct: 389 LQALAAE--LLREGKCDGEIQLQCEMLVRSYDPCISCSVH 426 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 85/221 (38%), Gaps = 16/221 (7%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 + L VD + R+EG V I D V + R E L+GR +A R Sbjct: 2 TTKTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITSR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICG+C + +++V A+ED +G+ V +R ++ W H +H + L D++ Sbjct: 62 ICGICPIAYMMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLGY 121 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + + + L + N++ + G + G YKL Sbjct: 122 DSVIAMAGDYPDLVQRGLR---------LKKIGNQIISLIGGRAIHPINVRVGG--FYKL 170 Query: 195 PPEANLMGFAHYLE-ALDFQREIVKIHAVFGGKNPHPNWIV 234 P +L LE A+ E V+ A F P P++ Sbjct: 171 PSRQDLHSLVADLEWAVAAAAETVRWVAAF----PFPDFAP 207 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 102/302 (33%), Gaps = 40/302 (13%) Query: 292 IGTGLSDKCVLSYGAFPDIANDFGEKSLLM-----PGGAVINGDFNNVLPVDLVDPQQVQ 346 IG + G F + + SL+ A + P P Sbjct: 152 IGGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAETVRWVAAFPFPDFAPDY-- 209 Query: 347 EFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN 406 EFV +P + D+ Q + +S + + Sbjct: 210 EFV-------ALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRPHSTALQAQLKER 262 Query: 407 A-MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGK 465 +GPLAR + + + ++V + + L + +S I+ R+ E +AA + Sbjct: 263 GNYFLGPLARFNLNFEQLTP-RTQAVAQSVGMTPLCRNPFKS----IIARSLEVMFAAEE 317 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKID 524 D + ++ T G G TEAPRG+L H+ I G I Sbjct: 318 ALRLIDSYIPPAQSVVDYTV-----------RAGCGHGCTEAPRGSLYHYYQIDQQGDIL 366 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPL--EILRTLHSFDPCLACSTH 582 Q PT N S + E + +PE L + + + ++DPC++CSTH Sbjct: 367 AAQIAPPTAQNQSTIEQDLWQFVEE------HIDLPENQLRSQCEQVIRNYDPCISCSTH 420 Query: 583 VL 584 L Sbjct: 421 FL 422 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 155 bits (391), Expect = 5e-36, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 N RL + + R+EG R + V ++ R E L+GRD R+ Sbjct: 6 NTDTTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFREPPDIT 65 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 RICG+C + +++ AIE A G + +R ++ W H +H Y L D++ Sbjct: 66 SRICGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLHAPDFL 125 Query: 133 DVLDALK 139 DA++ Sbjct: 126 GASDAIE 132 Score = 101 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 71/197 (36%), Gaps = 21/197 (10%) Query: 390 NEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTL 449 Q +S G A GPLAR Y A E+ + + L ++ Sbjct: 252 ERQVPHSTALHAHLDGQAYLTGPLAR----YSLHSADLSETARQAATEAGLGTVC-RNPF 306 Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR 509 I+ RA E +A + + E P G G +EAPR Sbjct: 307 QSIVVRAVETVFAVDEALRLIREYY-----------RPESPYVDMSPRAATGYGVSEAPR 355 Query: 510 GALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 G L H + +G+I + PT+ N + + + N + E R Sbjct: 356 GVLYHLYQLDSEGRILRATIIPPTSQNQAAIENDLRNTLA----ANLTLTDAELTELCER 411 Query: 569 TLHSFDPCLACSTHVLG 585 T+ ++DPC++C+TH L Sbjct: 412 TIRNYDPCISCATHFLD 428 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 154 bits (389), Expect = 9e-36, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 60/121 (49%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + V+ +TR+EGH V + D + + R E L+GR +A RICG+ Sbjct: 7 INVNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHITCRICGI 66 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H LAS+ A EDA+GIK + ++R ++L H++H Y L D + V + Sbjct: 67 CSCGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFV 126 Query: 139 K 139 Sbjct: 127 P 127 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 89/284 (31%), Gaps = 13/284 (4%) Query: 305 GAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRH 364 G F + ++ + + ++ + + ++L + EF Y + + Sbjct: 166 GGFTKLPSEIDLEEMHKK---LLALQKDIEVTIELFKDLKFPEFERDTEYIALVNDEDEY 222 Query: 365 PFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD 424 P + V + Y+ K +W + VG LAR + Y K Sbjct: 223 PLLYGDIGSTDGYRVSKYEYKNVTNEFIVPYASAKRTKWHRESYAVGALARFNLNYEKLH 282 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 E+ L L I L + + E + L N + Sbjct: 283 PKAKEAAA----TLGLKPKCINPYLN-TVAQIVECVHCVEDAIRIIETLWQKGINYDEVV 337 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKG 543 GVG E PRG L H G C++PT N + Sbjct: 338 VPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECDERGIFRNANCIIPTNQNTHNIELDM 397 Query: 544 QIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 E ++N LE+L + ++DPC++CS H++ Sbjct: 398 LKLVPE--IINQSPEEIRLSLEML--VRAYDPCISCSVHMVEVK 437 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R +VV+ + R+EGH EV + V + R E IL G+ + RIC Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C + +AS AIE A+GI+V +R + L + H H +H + LA D++ D Sbjct: 62 SICPDPYQVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKD 121 Query: 137 AL--KADPRKTSELAQSLSS 154 A+ A +T +LA + Sbjct: 122 AIGMAAQYPETVKLALKVKR 141 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 20/227 (8%) Query: 359 DQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 D + + G + +S K ++G++ G LAR L+ Sbjct: 214 DPGEHYGYSGEYLLVSDGTRHPVEKYMDLTNEVTVEHSSAKHSSYKGSSFMTGALARLLL 273 Query: 419 AYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLK 478 + ES + + ++ P + + + +A E ++ + D Sbjct: 274 NEKRLYGEAKESYESLRDKID-PRNPFSNNM----AQAIELLYSVQRAMDIID------- 321 Query: 479 NGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNAS 537 G L +K P G+ EAPRG L H + +GK+ V PT NA+ Sbjct: 322 -GLLDEGIKDKLMVEVKPRAGEGIAVVEAPRGLLYHHYKLDDNGKVVFANLVTPTAQNAA 380 Query: 538 PRDPKGQIGAYEAALMNTK-MAIPEQPLEILRTLHSFDPCLACSTHV 583 D +I A+ N K ++ E L++ + ++DPC++CS H+ Sbjct: 381 NMDKYLRI-----AVRNLKDLSDDELKLKLEMLVRAYDPCISCSVHL 422 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 RR+ ++ IT+IEGH + I D+N+ R E + G+ + RIC Sbjct: 4 RRIRIEEITKIEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+CT H +ASV A+EDA+GI++ + +R +ML + H++H Y LA D+ +V Sbjct: 64 GICTVAHEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVES 123 Query: 137 ALKADP------RKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 ++ +K EL ++ + + G + V Y Sbjct: 124 IIELANKNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKM 183 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGG 236 + P + LE ++RE + A++ G H + G Sbjct: 184 KEIYPFLLDTAELFLSLEYPKYERE-SEYVALWDG---HSIPLYKG 225 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 75/237 (31%), Gaps = 31/237 (13%) Query: 355 RYPNDQVGRHPFDGITDPWYNPGDVKGS------DTNIQQLNEQERYSWIKAPRWRGNAM 408 +Y + +DG + P Y S YS K G Sbjct: 204 KYERESEYVALWDGHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEYSSAKHSLIEGRDY 263 Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VG LAR I E +R + L +A E A + Sbjct: 264 MVGALARLNIN-RNLREEARELAERYGVRFPSNRIAWIN-----LAQALENVHFALEAME 317 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQC 528 + NLK + + + GVG EAPRG L H I++GK Sbjct: 318 IAE----NLKEYDPHKINIPRV-------SGEGVGVIEAPRGLLIHHYKIKNGKCTYVNI 366 Query: 529 VVPTTWNAS--PRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 + PT N R KG I +E + + ++DPC++CS HV Sbjct: 367 ITPTAMNTENIERILKGYISQI------VSKNDEYIKMEAEKIIRAYDPCISCSVHV 417 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 79/209 (37%), Gaps = 12/209 (5%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 A R + P+TR+EG R + I D V + R E L+GR + Sbjct: 2 RATRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITA 61 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C + ++++ AIE + V +R ++ W H +H + L D++ Sbjct: 62 RICGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLG 121 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 AL + + L + + K+ + R V R G W Y+ Sbjct: 122 YDSALHLAQDQPA-LVKLGLTLKKAGNTLMTVIGGRAIHPVNA------RVGGW----YR 170 Query: 194 LPPEANLM-GFAHYLEALDFQREIVKIHA 221 P +L +A D R+ + A Sbjct: 171 APRRRDLTELVGQLEQARDIARDTARFTA 199 Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 82/225 (36%), Gaps = 22/225 (9%) Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-GNAMEVGPLARTLIAY 420 G +P + D+ +D + EQ +S G + GPLAR + Sbjct: 219 GEYPVERGRIASTAGLDIAPADYDRHFTEEQVPWSNALHSTLAAGGSYLTGPLARFALGA 278 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 + A E+ + L P + I+ R E AA + Sbjct: 279 ERLAPAARETAAEIG--LRPPERNPYRS---IIVRCIEMVHAADEALRII---------A 324 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPR 539 + E P G G TEAPRG L H I +G I + V PT N P Sbjct: 325 DYTEPDPSALE--APPRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIVPPTAQNQRPI 382 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + G E + ++ PE L R + ++DPC++C+TH L Sbjct: 383 EED-LRGVVERFM---NLSEPELALRCERAIRNYDPCISCATHFL 423 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 148 bits (373), Expect = 6e-34, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 2/140 (1%) Query: 12 INNAGRRLV--VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 +N A R L + ++R+EG + + V + + R E L GR + Sbjct: 1 MNFADRPLSLSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPP 60 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 RICG+C + ++S AIE + +P+N +R ++ W H +H + L Sbjct: 61 DITARICGICPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAP 120 Query: 130 DWIDVLDALKADPRKTSELA 149 ++ ++ +E+ Sbjct: 121 GFLRYPSLMEMAKDYPTEVG 140 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 91/218 (41%), Gaps = 35/218 (16%) Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGN---AMEVGPLARTLIAYHKGDAATVESVDR 433 G + ++E+ + A RW GN GPLAR + Y+ + + + Sbjct: 235 GQQPVPIEQFENFFKEEQTDYSNALRWLGNDSAPCVAGPLARFNLNYYLLPPFLRDILKQ 294 Query: 434 MMSALNLP-LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 + LN P L+ QS L R++ ++ Y FD+ + ++ + EP Sbjct: 295 --TTLNYPCLNPFQSILVRLV-----------EVAYAFDEAIRLIET------YEPEGEP 335 Query: 493 ATW---PTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNA--SPRDPKGQIG 546 P G G +EAPRG L H + G I + V PT +N + D K I Sbjct: 336 CCIDFKPCASLGQGISEAPRGILYHRYHVDEQGIITGAKIVPPTCFNLVSAEEDLKAWIE 395 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 ++ + A EQ + ++DPC++C+TH++ Sbjct: 396 SHPHDSIENLSADCEQ------IVRNYDPCISCATHLI 427 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 65/122 (53%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + +D + R+EGH V +N++ + + +S R E++L+G+ RDA V R+C Sbjct: 3 TITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVCS 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ H LASV A+E A+GI V D R ++ + H +H + LA D++ Sbjct: 63 ICSAGHTLASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNASI 122 Query: 138 LK 139 L+ Sbjct: 123 LQ 124 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 41/211 (19%), Positives = 75/211 (35%), Gaps = 20/211 (9%) Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 D+ + + + R+S K + VG LAR + + + + ++ A Sbjct: 234 DIPVAHFYQRVNEKVVRHSTAKQSTYAKKPFMVGALARMVHNGERLTGEAAQLREALLPA 293 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 +TL + E WA + + L A + Sbjct: 294 Q-------PTTLHNNAAQFVELVWALEEAVALCEALQEG-------PALIPPMTTMGFEG 339 Query: 498 ECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMN 554 E G+ E PRG L H + +G + + PT N + RD +G + L Sbjct: 340 EQMGLAALEVPRGTLYHLYGVNGEGVLTQADIITPTAQNLAHVERDFAHGVGYW---LEQ 396 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 + + L + ++DPC++CSTH++ Sbjct: 397 PQRQQEQLRLYLEMIARAYDPCISCSTHLVD 427 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 43/118 (36%), Positives = 67/118 (56%), Gaps = 2/118 (1%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVER 74 R+V+ P +R EGH + ++D+ ++T T RGLE I+ G+ P A V+R Sbjct: 2 SERIVISPTSRQEGHAELVMEVDDEGIVTKGRYFSITPVRGLEKIVTGKAPETAPVIVQR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ICGVC H LASV AI+D++ I+VP ++R + LA + H +H + L D++ Sbjct: 62 ICGVCPIPHTLASVEAIDDSLDIEVPKAGRLLRELTLAAHHVNSHAIH-HFLIAPDFV 118 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 82/205 (40%), Gaps = 28/205 (13%) Query: 391 EQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG 450 + +R++ + W + E+ A + I + G V RM+ G + Sbjct: 223 DLDRFTEVMPESWYDDP-EIAKRACSTIPLYDGRNVEVGPRARMVEFQGFKERG---VVA 278 Query: 451 RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRG 510 + + RA E + A + D+L T+ A + E T GVG E PRG Sbjct: 279 QHVARALEMKTALARAIEILDELDTS------APVRADFDERGTGKL---GVGAIEGPRG 329 Query: 511 ALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTL 570 H A + +GKI Y +VPTTWN P + +E + Sbjct: 330 LDVHMAQVENGKIQFYSALVPTTWNIPTMGPATEGFHHEYG---------------PHVI 374 Query: 571 HSFDPCLACSTHVLGDDGSELISVQ 595 ++DPCL+C+THV+ D + ++ Sbjct: 375 RAYDPCLSCATHVMVVDDEDRSVIR 399 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 11/207 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ ++P+TR+EGH + + +++Q + NA F G E L G + V IC Sbjct: 19 KKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVSTIC 78 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GV GVH ASV A + G++ A IR + + DH Y L D++ Sbjct: 79 GVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCGPT 138 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A A+ + + + K LKK ++ +G HP LP Sbjct: 139 ASPAERNLVGLVLKVGADVGKLV----------LKKRYSAVKIFELTSGRPSHPVAALPG 188 Query: 197 E-ANLMGFAHYLEALDFQREIVKIHAV 222 + + E L + +++ + Sbjct: 189 GWSKRITEEERKEILACADDCIELAKL 215 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 80/244 (32%), Gaps = 31/244 (12%) Query: 358 NDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQER----YSWIKAPR-----WRGNA- 407 ++ +DG G+ G IQ L+ +S+ KAP W G Sbjct: 250 DENDKVTYYDGTQKIVDTKGNELGRFKGIQYLDYIAERTLPWSYQKAPYLKKLGWNGLVD 309 Query: 408 ------MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQW 461 VGPLAR + E+ ++M++A + TL RA E Sbjct: 310 GDGTSIYSVGPLARFNVGSGFDTPLAQEAYEKMLAAFG--GKPVHHTLAYHWTRAIELMH 367 Query: 462 AAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD- 520 AA ++ + + GVG EA RG L H D Sbjct: 368 AAETVKKIASD----------ESITDPNVRQELGTPVGEGVGIVEAARGVLIHHYKTDDK 417 Query: 521 GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 G + +V TT N P + + A +EI +D C ACS Sbjct: 418 GIVTDANLIVATTHNKGPMNIAVKRAAQSFIKNGKVDEGILNLVEI--AYRPYDLCFACS 475 Query: 581 THVL 584 TH L Sbjct: 476 THTL 479 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 77/196 (39%), Gaps = 3/196 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + VD I R+EGH V I D V T ++ R E +++GR + RICG+ Sbjct: 6 IHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGI 65 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H + + AIE G++V D +R +++ + +H H + A D++ + Sbjct: 66 CSSSHVVTDLKAIERVFGVEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLGMPSVF 125 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + EL + V R + +G F + +Y + Sbjct: 126 PLA-QTDPELFEQALGLKALGNELCTKVGGRSIHPITA-VVGGFTHEIEP-AEYLELADK 182 Query: 199 NLMGFAHYLEALDFQR 214 LEA+D R Sbjct: 183 MDAAMDFALEAVDLFR 198 Score = 98.7 bits (244), Expect = 5e-19, Method: Composition-based stats. Identities = 75/431 (17%), Positives = 136/431 (31%), Gaps = 96/431 (22%) Query: 164 FDVQNRLKKFVEGGQLGIFRNGYWGH------PQYKLPPEANLMGFAH---YLEALDFQR 214 +V +R + E G + + H P + P + + +AL + Sbjct: 84 VEVTDRTRALRELLVYGSYLQNHASHLFVFAAPDFLGMPSVFPLAQTDPELFEQALGLKA 143 Query: 215 EIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 ++ GG++ HP +VGG I E + ++++ D Sbjct: 144 LGNELCTKVGGRSIHPITAVVGGFTHEIEPAEYLEL----ADKMDAAMDFALEAVDLFRG 199 Query: 274 VMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNN 333 +PD G +L+ + +++ + G V + + Sbjct: 200 FEVPDIATAG----------------DMLAMVEDDYYPVECSDQAFFLNAGIVFDANEVQ 243 Query: 334 VLPVDLVDPQQVQEF-VDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ 392 + ++E V H+ Sbjct: 244 ---------EHIEEHAVPHS---------------------------------------- 254 Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 + + R + G LAR ++ V + L P + + Sbjct: 255 --AALLARVRETQSPYFTGALARVNASWQNLGQNAK--VAAAKAGLRPPEA---NPFMNN 307 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + +A E A + KL A AS+ P R VGFTEAPRGAL Sbjct: 308 VAQAVEIVDALDRCADLCRKLAE-----PGAIASSSLPVPFEV-KAGRAVGFTEAPRGAL 361 Query: 513 GHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLH 571 H + +G++ + PT N + + ++ A L+ A LEI + + Sbjct: 362 FHDLTLDAEGRVTHASILTPTAQNVANLEADMRLLA--EKLVADGAAEDVVRLEIEKLVR 419 Query: 572 SFDPCLACSTH 582 ++DPCL+CS H Sbjct: 420 AYDPCLSCSVH 430 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 144 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 2/190 (1%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ + +TR+EG + + + ++ R +E IL+G++ RIC Sbjct: 2 KKIE-NLLTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRIC 60 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C + ++ V AIEDA G+KV +R + W H VH + L D+++ Sbjct: 61 GICPVAYQISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGS 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + + + E + + + + R+ V G + + +P Sbjct: 121 VFEVG-KDSPEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPL 179 Query: 197 EANLMGFAHY 206 + + Y Sbjct: 180 LEKALDLSVY 189 Score = 136 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 126/337 (37%), Gaps = 63/337 (18%) Query: 270 FINNVMIPDALAIGQFNKPWS-----EIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGG 324 F P+ L IG K +IG +S +S G F A+D KS++ Sbjct: 122 FEVGKDSPEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSII---- 177 Query: 325 AVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDT 384 L + + ++ EF +P++++ F + + Y Sbjct: 178 ----PLLEKALDLSVYALKRFSEF------NFPDNEIPDIHFLSLEEEEYPILKGDIVSN 227 Query: 385 NIQQLNEQE----------RYSWIKAPRWRGNAME-VGPLARTLIAYHKGDAATVESVDR 433 +L ++E +S K + G + VGP++R +Y K ++S Sbjct: 228 KGLRLTKEEFDNVIKEYQVDHSTAKRAKLYGRDLYIVGPISRFNNSYEKLSYMALKSSKD 287 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF-DKLMTNLKNGNLATASTEKWEP 492 + L P I+++ IL R E + + D +LKN + Sbjct: 288 I--DLYPP---IKNSFKTILIRMVEIIHSLERSIDLIKDYRKESLKNADYTV-------- 334 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 E G G +EAPRG L H + +GKI V PT+ N E + Sbjct: 335 ----KEGTGYGVSEAPRGILWHKYSFDSEGKIKKADIVPPTSQNQD---------IMEVS 381 Query: 552 LMNTKMAIPEQPLEILR----TLHSFDPCLACSTHVL 584 + N + E EIL+ + +FDPC++C+TH L Sbjct: 382 VRNM-IMNRENIEEILKTGEKVIRNFDPCISCATHFL 417 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 75/370 (20%), Positives = 130/370 (35%), Gaps = 97/370 (26%) Query: 216 IVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTAD-FINN 273 I K+ A+F G+ PH ++ +VGG+ C E ++ +++I + D FI Sbjct: 128 INKLLALFSGQWPHSSYCVVGGVTCDPTSLE-----------IHQAKTLIQQIRDQFIQL 176 Query: 274 V-MIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFN 332 + + D L + ++ L +K +L G D Sbjct: 177 IGKLHDPLNLT---NDLQKLYRTLQEKELLLVGKSHDR---------------------- 211 Query: 333 NVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ 392 F+ + + ++ H G + + + + NEQ Sbjct: 212 ---------------FITFSQDSHVSNIKLLH------------GQKRKTKLTLIEENEQ 244 Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 +R S+ K + G E GPLAR + + D + + S RI Sbjct: 245 KR-SYAKNVTYNGKYYETGPLARLM-----------QQTDPFVRYFHRRFK--DSITTRI 290 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + R +E +K++ +L +L+ S + + + EA RG+L Sbjct: 291 IARIYEVSLL-------IEKIIDHLATIDLSQPSV----VESKMQDGTAIISIEAARGSL 339 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS 572 H A I GKI+ Y + PT WN S + + A++ T S Sbjct: 340 IHQATIHQGKIETYNFITPTQWNLSNGTSQN-PSVIQKAIVGTSDEKIAN-----LIFRS 393 Query: 573 FDPCLACSTH 582 FD C C+TH Sbjct: 394 FDICSVCTTH 403 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 53/284 (18%), Positives = 91/284 (32%), Gaps = 71/284 (25%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++ + +IEG E D+ IT+ +RG+E IL+GRDP DA RICG+C Sbjct: 3 IELLEKIEGEAFLEFQ-KDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICG 61 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 H A+ +E + + A IR I +H+ FY + Sbjct: 62 HAHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYLVIF------------ 109 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 + P F V + + V +L +G W H Y Sbjct: 110 --------------HELNIPYDFTKVHHLI---VTINKLLALFSGQWPHSSYC------- 145 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLV 260 +VGG+ C E + + + Sbjct: 146 --------------------------------VVGGVTCDPTSLEIHQAKTLIQQIRDQF 173 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSY 304 +I + D +N + D + + + + G S +++ Sbjct: 174 IQLIGKLHDPLN--LTNDLQKLYRTLQEKELLLVGKSHDRFITF 215 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNA-VSCGTMFRGLEIILQGRDPRDAWAFVER 74 G+ + ++P TR EGH + + ++D ++ T RG E L G+ A V R Sbjct: 2 GKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVSR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 CG+C HA ++V AIEDA GI P + ++R + H H +H + L D+I Sbjct: 62 FCGICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEF-LIAPDFIPE 120 Query: 135 LDALKADPR 143 D ++ R Sbjct: 121 KDRVEYITR 129 Score = 98.0 bits (242), Expect = 9e-19, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 82/247 (33%), Gaps = 57/247 (23%) Query: 339 LVDPQQVQEFVDH---AWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERY 395 LVD ++ E + + + + R + Y P DV + +Q + Sbjct: 198 LVDGTEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEKEVAVQACQLFQE- 256 Query: 396 SWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCR 455 + G MEVGP AR + G + + R Sbjct: 257 -------YNGRLMEVGPRAR------------------FAKFHDFKEKG---AMAIHIAR 288 Query: 456 AHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHW 515 A+E + ++L T +P E G+G EA RG H Sbjct: 289 AYENVIHVKRAMEIIEELN--------VDGLTRAKDPILGDGEKLGLGVHEAARGHNTHQ 340 Query: 516 AAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFD 574 A+I G+I Y +V TTWN P K Y+ A + ++D Sbjct: 341 ASIDEKGRITYYNAIVATTWNI-PLIGKAVEAHYKFA---------------EHVVRAYD 384 Query: 575 PCLACST 581 PC++C+T Sbjct: 385 PCVSCAT 391 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 58/130 (44%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + VD I R+EG E+ + D V ++ R E I G+ +A A RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSF 67 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H L +V A E A+G +V + +R ++ H +H Y L D++ + L Sbjct: 68 CSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPL 127 Query: 139 KADPRKTSEL 148 K + E+ Sbjct: 128 KMLDKYKKEI 137 Score = 108 bits (269), Expect = 6e-22, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 130/410 (31%), Gaps = 41/410 (10%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + N++ + EA+ +++ + AV+ + G ++ Sbjct: 35 KLNIIEGPRFFEAITIGKKLDEALAVYPRICSFCSAAHKLTAVEAAEKAVGFEVREEIQA 94 Query: 257 LNLVQSIITRTADFINNVMI---PDALA----IGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 L V I ++ + PD + + +K EI L K + S+ Sbjct: 95 LREVLYIGDMIESHALHLYLLVLPDYMGYSNPLKMLDKYKKEINIALDLKNLGSWMMDEL 154 Query: 310 IANDFGEKSLLMPG-GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD- 367 A +++++M G G + + + L + + E+ + + + P Sbjct: 155 GARAIHQENVVMGGFGKLPDKTTLEKMKKRLQEALPLAEYTFELFSKLEQYEEVEGPIIH 214 Query: 368 -------------GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRG-NAMEVGPL 413 G + + + +S+ K + G G + Sbjct: 215 MAVRPRGDVYGIYGDAISVSDGFEFPSEGYKKHMVERVVEHSFAKHSFYNGEKPFMTGAI 274 Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 +R + K E + L + L +A E + + D+ Sbjct: 275 SRVVNHADKLYGRAKELYESHKDLLRPT-----NPFANNLAQALELVYFMERGIDLIDEA 329 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTT 533 + + + GV TEAPRG L + ++DG++ + PT Sbjct: 330 LA---------KWPIRPRDEVDVKDGFGVSTTEAPRGILVYALEVKDGRVAYADIITPTA 380 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 +N + + ++ A + L + ++DPC++CS HV Sbjct: 381 FNLAMMEVHVRM----MAEKHYNDDPERLKLLAEMVVRAYDPCISCSVHV 426 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 59/116 (50%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + + P+TR+EGH V ++ +V ++ R E++L+G+ R+ + RIC + Sbjct: 5 IEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICRICSL 64 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 C+ +H + ++ A+E A GI V + R +++ H +H + LA D + Sbjct: 65 CSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFNA 120 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 80/233 (34%), Gaps = 31/233 (13%) Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 P G VKGSD +S K + + VG L+R + Sbjct: 216 DENAPPLFGDMLTTSTGIAVKGSDYRSALKESVNDHSNGKFSHFDDTNIAVGALSRLNMN 275 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 + A ++ D+ L + L +A E +A D L L+ Sbjct: 276 -IRLTEAAGKAFDQAKKKLVNGDMWQNN-----LAQAIELVFAVESAMEIIDSL---LQT 326 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASP 538 G+ +A+ P + G TEAPRG L H + G + PT N + Sbjct: 327 GHGHSATDGILSP-----KGEGTAITEAPRGVLIHSYSFNSRGYCVGADIITPTAINQAA 381 Query: 539 RD------PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 + + GA E E ++ + ++DPC++C+ H++ Sbjct: 382 IEQDLLFLARATEGAGEQ----------EMKFKLEMLVRAYDPCISCAVHLIS 424 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 L V + R+EG ++ ++D + T + R E L+GR+ ++ V RICG+ Sbjct: 9 LCVPVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGI 68 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + +++V+AIE G +R + W H +H + LA D++ A Sbjct: 69 CPVAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSAS 128 Query: 139 K 139 + Sbjct: 129 E 129 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 77/223 (34%), Gaps = 20/223 (8%) Query: 363 RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHK 422 +P + + D+ +D QE +S G VGPLAR + + Sbjct: 222 EYPMNEGRIVSSDGLDIPIADYESHFREHQEPHSTALYAALDGRPYLVGPLARLNLNLDR 281 Query: 423 GDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNL 482 E++ R A ++ I+ RA E +A + + Sbjct: 282 LHMPVREALGRTGIAF-----PSRNMFHSIVARAAEIHYALLETSRLLEDYTE------- 329 Query: 483 ATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDP 541 E P G G TEAPRG L H + G++ + V PT+ N + + Sbjct: 330 ----PEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHARIVPPTSQNQARMEA 385 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + + + + ++DPC++C+TH L Sbjct: 386 DLRHSLE---TLGLDRDGETLRQQAEMVIRNYDPCISCATHFL 425 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 55/127 (43%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 D +TR+EGH VN D + T R E +L GR ++ RIC +C+ Sbjct: 10 DLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVTSRICAICSV 69 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 H +AS+ A E A+G+ V + +R + L H++H LA D + L Sbjct: 70 SHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLA 129 Query: 142 PRKTSEL 148 EL Sbjct: 130 DTHEDEL 136 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 89/243 (36%), Gaps = 23/243 (9%) Query: 352 AWYRYPNDQVGRHP----FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA 407 A+ R HP F T + G++ SD +S K R + Sbjct: 207 AFERETEYISLTHPEEYAFAEGTIYSSDVGEIPVSDYRDVANEYVVEHSTAKFARHERES 266 Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VG LAR + E DR + + + + E G+ Sbjct: 267 YMVGALARFNNNADQLAPRATEIADRFGLDAPVHNPYLNNV-----AQLVEVAHLLGESV 321 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLY 526 + L+ + T + P PT +G+G E PRG L H A D G++ Sbjct: 322 RLIEALLD-----DGLTPQSNYHVPEIDPTAGQGIGAIEVPRGVLFHEYAYDDTGEVTEA 376 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLE--ILRTLHSFDPCLACSTHVL 584 CV+PT N G I L+ T + PE ++ + + ++DPC++CSTH L Sbjct: 377 NCVIPTNQN------HGNIQRDMETLVPTIVDHPEDEIKHSLEMLVRAYDPCISCSTHYL 430 Query: 585 GDD 587 + Sbjct: 431 DVE 433 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 2/116 (1%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+ P +R EGH + ++D+ ++T T RGLE ++ G++P A +RIC Sbjct: 4 RIVISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 GVC H LASV AI+ ++ I+VP ++R LA + +H + L D++ Sbjct: 64 GVCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIH-HFLIAPDFV 118 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 79/220 (35%), Gaps = 28/220 (12%) Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P + + + +S + W + E+G A T I G RM Sbjct: 208 PLLASSASYGNLDEFDYDNFSEVLPEAWYDDP-EIGKKACTTIPLINGKNVETGPRARMD 266 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 G + + + RA E +++ T+ A A + + T Sbjct: 267 KFNGFKDKG---VVAQHVARAEEMLNNYNLTIDLLEQIDTS------APARADYDDRGTG 317 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G+G E PRG H A ++D KI Y +VPTTWN P + ++ Sbjct: 318 KL---GIGVIEGPRGTNVHMANVKDSKIQFYSAIVPTTWNIPTMGPATEGFHHKYG---- 370 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 + ++DPCL+C+THV+ D + ++ Sbjct: 371 -----------ADVIRAYDPCLSCATHVMVVDDEDKSILK 399 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 29/196 (14%) Query: 395 YSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILC 454 YS+ K ++G + VG LAR L+ K + +D + + L Sbjct: 241 YSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLDSYKEKIKSGHVIYNN-----LA 295 Query: 455 RAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGH 514 +A E +A ++L++ + S G+G+ EAPRG L H Sbjct: 296 QAIELVYALEVASKIAEELISEGIEKSTCEPSE---------KSGEGIGYVEAPRGVLVH 346 Query: 515 WAAIRDGKIDLYQCVVPTTWNASPR------DPKGQIGAYEAALMNTKMAIPEQPLEILR 568 I + +I + PT +N D + G + +K+ Sbjct: 347 HYRIENERIVWSNTITPTAFNQGMMEKSLLEDARNMFGKESETTLKSKLEE--------- 397 Query: 569 TLHSFDPCLACSTHVL 584 + +FDPC++CS HV+ Sbjct: 398 VVRAFDPCISCSVHVV 413 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 67/344 (19%), Positives = 125/344 (36%), Gaps = 37/344 (10%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +D TR+EG + E+ I + V V R E++ GR D RIC + Sbjct: 6 IELDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAI 65 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H++ASV AIE+A+GI+V ++ +R + L H +H Y LA D DA+ Sbjct: 66 CYASHSIASVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAI 125 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + + + L+ + N +++ + G ++ G +Y E Sbjct: 126 SMVSKYGELIKEGLT---------IKALGNMIRETIAGREIHGINVKPGGFGRYPSEREL 176 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 + A R +I +F + P I +P + G +R+ Sbjct: 177 EKIA----KHARALVRFARRIVNIFATQEPRGAKIE--VPMVTSEYLWGDELIAGNDRIQ 230 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSY---GAFPDIANDFG 315 I V +P + A + K L+ + G + + + Sbjct: 231 YED---------IEEVPVPYSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLDSYK 281 Query: 316 EKSLLMPGGAVINGDFNNVLPV-------DLVDPQQVQEFVDHA 352 EK + G VI + + + + + + E ++ + Sbjct: 282 EK---IKSGHVIYNNLAQAIELVYALEVASKIAEELISEGIEKS 322 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 134 bits (337), Expect = 8e-30, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 138/395 (34%), Gaps = 68/395 (17%) Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 +Y++AL ++ + G + H V I + + L +V++ Sbjct: 45 KNYMDALVIN---PRVCGICGHSHLHATVKVIEKVFKAKISKKAQIFREVTSLLEIVENH 101 Query: 264 ITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPG 323 I + + P + ++ + + +S + G FP S ++PG Sbjct: 102 IK----WFYITIYPTQIKDKEYLFKAVKFSSKISKAIAILAGQFP-------HNSYMVPG 150 Query: 324 GAVINGDFNNVLPVDL----VDPQQVQEFVD-----HAWYRYPND-------QVGRHPFD 367 G + + ++ + + + ++E +D H R+ + + + Sbjct: 151 GVTCDPTYMEIMRLKDLIKEIKEEYIKEIMDENLTSHDLERFFENLPKDIGKSLNKFLVL 210 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G ++ + + GD K E+ S K + EVGPLAR +I +K Sbjct: 211 GESNIFKSNGDYKNVK-------EERNKSLSKNALYNNEYYEVGPLARMIINKNKNIKKI 263 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + S R+ R +E ++ ++ Sbjct: 264 YDIYS-------------DSIYTRMCARIYEPLLLLDYIEQKLSEV---------DLCEP 301 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 +P + + EAPRG+L H +I++ KID Y VVPT +N + K Sbjct: 302 SFLKPNV--RNGKAIVAVEAPRGSLIHEISIKNEKIDYYNIVVPTQFNLASST-KENPSP 358 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 +AALMN +A + FD C C +H Sbjct: 359 AQAALMNEDIAYVDS------VFRCFDICAVCMSH 387 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 6/137 (4%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG + I I + G+E L+ ++ DA R+CG+C H A+ Sbjct: 12 EGEA--TLKIEGDKKIDFVQIEFWQYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHAT 69 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM----DWIDVLDALKADPR 143 V IE K+ A I R + +H+ FY D + A+K + Sbjct: 70 VKVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSK 129 Query: 144 KTSELAQSLSSWPKSSP 160 + +A +P +S Sbjct: 130 ISKAIAILAGQFPHNSY 146 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 50/215 (23%), Positives = 79/215 (36%), Gaps = 23/215 (10%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + ++ TR+EG+ E+ I + V V R E++ GR D RIC + Sbjct: 4 IEIEAFTRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAI 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H++ASV IE A+G+ VP+ ++R + L H +H Y L D DA+ Sbjct: 64 CYLSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAI 123 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + S G +K F G + G H P Sbjct: 124 R----------------MASKHGEVVKEGITIKAF--GNYIRELLGGREIHGINIKPGGF 165 Query: 199 NLMGFAHYLEALDFQ-----REIVKIHAVFGGKNP 228 LE ++ Q R ++ +F + P Sbjct: 166 GRYPTIEELEQIESQCEALLRPARRVVNIFAEQEP 200 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 78/209 (37%), Gaps = 20/209 (9%) Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 D + D + YS+ K R++GN VG L R ++ + + Sbjct: 224 DGEKFDYLEHIEEKTLPYSFAKQSRYKGNIFMVGALPRVMLKHDMLTPMAKHFYEEHKEK 283 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 L + L +A E +A K + L+ G P Sbjct: 284 LASGYVSFNN-----LAQAIELLYALEKAKEVAKTLLDKGIEGENVP---------IEPQ 329 Query: 498 ECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 E G+G+ EAPRG L H I G I + PT +N ++ YE A Sbjct: 330 EGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIM----ELSLYEEARKRYG 385 Query: 557 MAIPEQPLE-ILRTLHSFDPCLACSTHVL 584 + L+ + T+ +FDPC++CS H++ Sbjct: 386 SSDETTFLQKLEETVRAFDPCISCSVHIV 414 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 5/119 (4%) Query: 18 RLVVDPITRIEGH-MRCEVNINDQNVITNAVSCGTMFRGLEIILQGR-DPRDAWAFVERI 75 ++ + P+ + + V ++ + V+ + RG+E + + R ERI Sbjct: 180 QVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAERI 239 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY---QLAGMDW 131 CG+C H+ A A+E A+GI+VP+ A IR +ML H HL++ LAG DW Sbjct: 240 CGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298 Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 38/185 (20%), Positives = 66/185 (35%), Gaps = 27/185 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + + +P+ L R+ RA E ++ Sbjct: 389 VGPVARGS-SIKRDTRKDHPYAAYSEVDFKVPVHSEGDVLARLSVRAEETFETISIIRQV 447 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQC 528 + + G A +++ P RG+G+ EAPRG H+ K+ ++ Sbjct: 448 LENM-----PGGPIQAEVKEYRPY-----ARGLGYVEAPRGEDVHFVITGPHSKVYRWR- 496 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 V +T+N P P G L + + + S DPC +C+ V+ D Sbjct: 497 VRASTYNNWPAIPYMCRG---YTLADLPL-----------IIGSIDPCYSCTERVIVVDV 542 Query: 589 SELIS 593 + Sbjct: 543 KSGRT 547 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 58/125 (46%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + R L V +TR+EG + I+D+ V +S R E +L+GR + Sbjct: 6 DTSRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLTS 65 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C + L++ A+EDA G+ V +R ++ W +H Y L D++ Sbjct: 66 RICGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFLG 125 Query: 134 VLDAL 138 D + Sbjct: 126 HDDVI 130 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 77/240 (32%), Gaps = 12/240 (5%) Query: 354 YRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPL 413 Y + P+D + Q +S R G G L Sbjct: 225 YAIESGVPTVVPYDAT----HPAWSFPLRTFCDHVTETQVPHSTALHSRLDGRRHLTGSL 280 Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCR--AHEAQWAAGKLQYFFD 471 AR ++ H +E+ G T +CR A ++ Y + Sbjct: 281 ARYAVSGHLLSPTALEAAASAGLDDPPLREGRDGTGQGTVCRNPFRSILVRAVEVFYAVE 340 Query: 472 KLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVV 530 + + + + G G TEAPRG L H A +G++ + + Sbjct: 341 EALRIITEYERPASPYVP----VPARSGVGHGATEAPRGLLYHRYAFDREGRVTDARIIP 396 Query: 531 PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 PT N + + +AAL + + E R + + DPC++CS H L + Sbjct: 397 PTAQNQGAIEEDLRRS-VQAALDRGQDSEAELTRLCERVIRNHDPCISCSAHFLDLNLET 455 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 1/105 (0%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDAWA 70 +N R+ + P TR EGH + + ++++ ++ A T RG E +L+G+ A Sbjct: 3 VNFVTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPI 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLW 115 V RICG+C H +AS AIE+AI +VPD+ ++R ++ Sbjct: 63 AVMRICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNR 107 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 78/217 (35%), Gaps = 47/217 (21%) Query: 382 SDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP 441 E ++ + I+ P + G E GP AR + N Sbjct: 242 PAQRYYDDEEAKQTTTIQIPLYAGVPAEGGPRARMV------------------KFGNFR 283 Query: 442 LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRG 501 G S + + RA E A + D+L N K + G Sbjct: 284 EGG--SAMDINIARAQENLGAVYRALEILDELDLNGKT-----------RAEVEYKDGFG 330 Query: 502 VGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 +G EAPR H A + +DGKI Y+ + +TWN E A+ P Sbjct: 331 IGVHEAPRATNTHMAEVGKDGKIKSYRIIAASTWNFP---------IVEKAIEG----YP 377 Query: 561 EQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 +Q E+ + ++D C +C+THV+ D ++VR Sbjct: 378 QQYAEV--IMRAYDICASCATHVIVKDEETKEIIEVR 412 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 126 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 12/136 (8%) Query: 2 STQYETQGYTINNAGRRLVVDP--ITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEI 58 + + +G N+ R + V P IT E GH R ++ + ++ + RG+E Sbjct: 170 TYPFINEG---NSDARVIPVGPLHITSDEPGHFRL--FVDGEQIVDADYRLFYVHRGMEK 224 Query: 59 ILQGRD-PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 + + R + +R+CG+C H++A ++E+A+GI+VP A+ IR+I+L H Sbjct: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 Query: 118 DHLVHFY---QLAGMD 130 HL++ G D Sbjct: 285 SHLLNLGLSCHFVGFD 300 Score = 51.7 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 65/200 (32%), Gaps = 31/200 (15%) Query: 398 IKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAH 457 + P +G L R + + D + + + + S R++ R Sbjct: 366 LATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTFTGGDVFS---RVMVRVK 422 Query: 458 EAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 E + L++ D + ++P +GF EAPRG HW+ Sbjct: 423 ETFDSLAMLEFALDNM-----PDTPLLTEGFSYKPH-----AFALGFVEAPRGEDVHWSM 472 Query: 518 I-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + + K+ ++C T N P L ++ + S DPC Sbjct: 473 LGDNQKLFRWRCRAATYAN-WP--------VLRYMLRGNTVSD------APLIIGSLDPC 517 Query: 577 LACS--THVLGDDGSELISV 594 +C+ ++ + +V Sbjct: 518 YSCTDRVTLVDVRKRQSKTV 537 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW-AFVERICGVCTGVHAL 85 +E + + + + RG+E I +GR D ERICG+C H+ Sbjct: 208 LEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTYDQVCFIAERICGICGCTHST 267 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY---QLAGMDW 131 A A+E+A GI+VP+ A IR I+L H HL++F L G D+ Sbjct: 268 AYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGIVSHLVGYDY 316 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 63/187 (33%), Gaps = 29/187 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GPL R G V + L G +L RA + + Sbjct: 408 GPLGR-----GSGRDFDVRRDHPYAAYKYLDFKVPVYKEGDVLARALVRIEEVFESIWII 462 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCV 529 ++ + + G++ E P +G TEAPRG H+ + K+ Y+ Sbjct: 463 EQALDQMPGGDILAEYKE------IPPYSEAIGMTEAPRGENIHYVMTGENNKVYRYRAR 516 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS--THVLGDD 587 T +N P P G I + PL + S DPC +C+ V+ + Sbjct: 517 AAT-YNNLPAVPDMMRG----------YTIADAPL----IVASIDPCYSCTERVQVVDVE 561 Query: 588 GSELISV 594 ++ + Sbjct: 562 SGKVRVL 568 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 49/97 (50%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ I ++ VI + G + RGLE + + RD VER+CG+C+ +HAL Sbjct: 19 LHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVERVCGICSCLHALCYCEG 78 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 +E +G++VP A +R I H HL+ A Sbjct: 79 VEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFA 115 Score = 42.1 bits (97), Expect = 0.060, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 16/108 (14%) Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQCVVPT 532 +T NL + + V E PRG L ++ K ++ + PT Sbjct: 315 ITAAPPPNLDLPTGLVAAKVKGKPDGEAVTRVEQPRGELMYYIKGNGSKNMERVRIRTPT 374 Query: 533 TWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 N P A L ++A + + S DPC++C+ Sbjct: 375 FANIPP---------LLAILPGCELAD------VPVIVLSIDPCISCT 407 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 122 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 67/171 (39%), Gaps = 11/171 (6%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDAWAFVERICG 77 + +D + RI G + + + V+ +A+ T RG E ++ G++P A V RICG Sbjct: 7 ITLDKVCRIAGEAKL-ILYEEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICG 65 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H +A+ AIE AIG+ P N ++R + H + + + D I Sbjct: 66 LCHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHAL-LFLMVAGDLIK---- 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 K +++ L + Y + G+ W Sbjct: 121 ----EEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWS 167 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 48/269 (17%), Positives = 90/269 (33%), Gaps = 36/269 (13%) Query: 322 PGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKG 381 P I G + + + + + +W + I D Sbjct: 152 PPNLTIGGMLSVPKWSVFNNLKARFKDLTASWEAAEELLIDEDIQTEIADELREAKRPFK 211 Query: 382 SDTNIQQLNEQERYSWIKA---PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSAL 438 + ++ W K P + E + TL++++ G+ RM++ Sbjct: 212 YLASGFFYGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARMITYR 271 Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTN--LKNGNLATASTEKWEPATWP 496 +S G L R + + A +L D++ + G++ Sbjct: 272 EFRD---ESLYGLHLARIEDTRLAIQRLGEILDEIRIEEPFRTGDITFRP---------- 318 Query: 497 TECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 +GVG EAPRG L H+ + +G++ + VVPT +N E Sbjct: 319 --GKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIP---------VMEEMAKGL 367 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + E + +DPC+ C+THV+ Sbjct: 368 SVKAAEA------VMRLYDPCIPCTTHVV 390 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 55/278 (19%), Positives = 101/278 (36%), Gaps = 15/278 (5%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRD-PRDAWAFVERICGVCTGVHALASVYAIE 92 E+ + V+ + RG+E + + R ERICG+C H+ A A+E Sbjct: 177 ELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERICGICGCTHSAAYCQAVE 236 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL-AGMDWIDVLDALKADPRKTSELAQS 151 DA GI VP+ A IR IML H HL+ F + + + + ++A+ Sbjct: 237 DAAGIYVPERAQYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGFMHIWRAREYIMDIAEL 296 Query: 152 LSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALD 211 ++ K+ R + + + + L A + +E + Sbjct: 297 ITGNRKTYGINIVGGVRRDITEDKKEKTLKLLDMVEKESREVLDNIAEMKELRERMEGVG 356 Query: 212 F--QREIVKI-----HAVFGG-----KNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 ++E +I A G + HP + + + + G V A + R Sbjct: 357 VLPKKEAREIGVVGPMARSSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEE 416 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 + + N M P L ++ P ++G G++ Sbjct: 417 IFESFNMIRQALEN-MPPGELINDEYEIPPFKLGIGVT 453 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 63/186 (33%), Gaps = 29/186 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR G V + +L G + R + Sbjct: 369 VGPMAR-----SSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNM 423 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 + + N+ G L E P G+G TEAPRG H A I G+ +Y+ Sbjct: 424 IRQALENMPPGELINDEYE------IPPFKLGIGVTEAPRGENIH-AVITWGENMIYRWH 476 Query: 530 V-PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV--LGD 586 T+N P A L +A + S DPC +C+ HV + Sbjct: 477 PRAATYNNLP--------AVPIMLRGNDVAD------APLIIASIDPCFSCTDHVSIIDS 522 Query: 587 DGSELI 592 + +++ Sbjct: 523 ESGKIL 528 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 121 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 14/182 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDAWAFVERICG 77 + ++ + RI G + + + + +A+ T RG E ++ G++P A V RICG Sbjct: 4 ITLNKVCRIAGEAKLVL-YEENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H +A AIE+AIGI P N ++R + H++ F +AG I+ Sbjct: 63 LCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIE---- 118 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG---HPQYKL 194 K E+ L + Y + G+F W + + +L Sbjct: 119 -----EKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARL 173 Query: 195 PP 196 P Sbjct: 174 PK 175 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 117/403 (29%), Gaps = 60/403 (14%) Query: 188 GHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 +P + + + G H + I + +N G+ + Sbjct: 48 KNPLFAVEAVMRICGLCHASHGIAMSEAIENAIGIIPPRN--------GILMREALGLVN 99 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + + +E L + ++ V+ + + ++G + L+ G Sbjct: 100 RIQSHMLEFLMVAGDLLIEEKR--EEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGM 157 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ-VGRHPF 366 + + + L + G + + + L D E D + + + F Sbjct: 158 FSVP-KWSVFNNLKARLPKLTGQWEEIAHL-LTDEDIQTEVADELREKKAENNYLVSSLF 215 Query: 367 DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 G ++ N + S + G +E GP AR Sbjct: 216 YGDRFNINAERIETMPYYEYRKDNPHSKESTTLIAFYGGEKVEAGPRARM--------KV 267 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 E D S G R + A +L+ D + + Sbjct: 268 YREFTD-------------SSLYGLHTARVQDTTLALIRLEEILDSIKMD---------- 304 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQI 545 +GVG EAPRG L H + +G++ + +VPT +N Sbjct: 305 EPFRTKNIVFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIP-------- 356 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 E + E + +DPC+ C+THV+ G Sbjct: 357 -VMEEMAKGLSVKAAEA------VMRLYDPCIPCTTHVVRLGG 392 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 47/97 (48%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ + D+ ++ + G + RGLE + RD VER+CG+C+ +HA+ Sbjct: 19 LHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIVERVCGICSCIHAMCYCQG 78 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 +E + ++VP A +R I H HL+ A Sbjct: 79 LETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFA 115 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 9/136 (6%) Query: 2 STQYETQGYTINNAGRRLVVDP--ITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEI 58 + YE + + + P +T E GH R ++ +N+I + RG+E Sbjct: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRL--FVDGENIIDADYRLFYVHRGMEK 222 Query: 59 ILQGRD-PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 + + R + +R+CG+C H+ A ++E+A+GI+VP+ A +IR I+L H Sbjct: 223 LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLH 282 Query: 118 DHLVHFY---QLAGMD 130 HL++ G D Sbjct: 283 SHLLNLGLACHFTGFD 298 Score = 46.7 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 36/172 (20%), Positives = 56/172 (32%), Gaps = 27/172 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+ R + + A V + + + + R+ R +E A + Y Sbjct: 390 VGPMVRAS-GHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYG 448 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHW-AAIRDGKIDLYQC 528 D NL G L +GF EAPRG HW + K+ ++C Sbjct: 449 LD----NLPGGPLMVEGFTYI------PHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 T N P L ++ + S DPC +C+ Sbjct: 499 RAATYAN-WP--------TLRYMLRGNTVSD------APLIIGSLDPCYSCT 535 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 46/101 (45%), Gaps = 4/101 (3%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPR-DAWAFVERICGVCTGVHALASVYAIE 92 E+ + ++ + RG+E + + R ERICG+C H+ A A+E Sbjct: 177 ELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERICGICGCTHSTAYCQAVE 236 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHFY---QLAGMD 130 DA I VP+ A IR IML H HL+ F L G D Sbjct: 237 DATNIYVPERARYIRTIMLEVERLHSHLLWFGVACHLLGFD 277 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 67/183 (36%), Gaps = 31/183 (16%) Query: 410 VGPLART--LIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGP+AR + + D D +P+ + L R L R E + ++ Sbjct: 369 VGPVARASGIDTDVRRDHPYAAYGD---LDFEVPVYKGEDVLSRFLVRYDETFQSFSMIR 425 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQ 527 D N+ G L E P G+G TEAPRG H I G+ +Y+ Sbjct: 426 QALD----NMPEGELIN------EDYEIPGFKLGLGVTEAPRGEDVH-VVITWGENKVYR 474 Query: 528 CVV-PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 +T+N P A L +A P+ + S DPC +C+ HV Sbjct: 475 WHPRASTYNNLP--------AVPVMLRGNDIADA--PI----IIASIDPCFSCTDHVSII 520 Query: 587 DGS 589 D Sbjct: 521 DSE 523 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 47/93 (50%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + + + ++T ++ G RG+E + R +ERICG+C+ H+ A + A Sbjct: 19 ANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICSHTHSTAYIQA 78 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 +E+ G+ +P AN IR+++ H HL+ Sbjct: 79 VEEIAGLTIPPRANYIRSLVGELERIHSHLLWL 111 Score = 43.3 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 23/133 (17%), Positives = 41/133 (30%), Gaps = 24/133 (18%) Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 GR L R E + ++ ++L G ++ + K EA Sbjct: 250 VYGRTLVRVGELMESFRMIRQILNEL----PEGEVSVKAPRKI------PAGEACSRYEA 299 Query: 508 PRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 PRG H+ +G P K + + KM ++ Sbjct: 300 PRGECFHYIR-ANGTDK-------------PERVKVRASTFANIQAVAKMMENNNLADVP 345 Query: 568 RTLHSFDPCLACS 580 + + DPC +C+ Sbjct: 346 IIVAAIDPCFSCA 358 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 11/115 (9%) Query: 14 NAGRRLVVDPITRIEGHMRCE------VNINDQNVITNAVSCGTMFRGLEIILQGRDPRD 67 +L + P+ H+ + ++I +++ + G + RG+E + + R+P Sbjct: 4 TKTYKLPIGPV-----HVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQ 58 Query: 68 AWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 ER+CG+C+ HA+A V A+EDA I+VP A IR+++L H H++ Sbjct: 59 VIYLAERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILW 113 Score = 57.9 bits (138), Expect = 1e-06, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 62/195 (31%), Gaps = 31/195 (15%) Query: 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST-------LGRILCRAHE 458 +GP +R + + D D P+ T R L R +E Sbjct: 212 KYCALGPTSRG--SGVRADVRWSAPYDAYCDIHVEPVVPQDYTGEVHGDVYDRFLVRVYE 269 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLA-TASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 + +K+M L G++ K E G G EAPRG H Sbjct: 270 VLQSLD----ILEKIMEGLPEGSITFEPKVNKLLTVLKKAEGVGYGCIEAPRGDDTHAVG 325 Query: 518 IR--DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDP 575 ++ + ++ PT Y A+ M + + ++S DP Sbjct: 326 LKAQQENVQWWKVRAPT---------------YSNAVSWPLMFKDNELADAPLIINSIDP 370 Query: 576 CLACSTHVLGDDGSE 590 C++C ++ D S Sbjct: 371 CISCMERMVLSDTSS 385 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%) Query: 18 RLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ + PI +E + + ++ + +I + G RGLE I R+ VERIC Sbjct: 10 KIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERIC 69 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL---------------V 121 G+C+ H A+E+ GI+VP+ A IR I+ H HL + Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHAIGYDTVL 129 Query: 122 HFYQLAGMDWIDVLDALKADPRKTS 146 H LA +D+L+A+ + + Sbjct: 130 HLSWLARERVMDILEAIGGNRVNYA 154 Score = 55.2 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTN-LKNGNLATASTEKWEPATWPTECRGVGFTE 506 R++ R E + ++ FD++ +K + + K + A E G+G E Sbjct: 262 VFDRMVVRVGELWQSMEIIEKAFDQMPEGKIKTFSKDNVTLTKLKKA----EGAGIGRYE 317 Query: 507 APRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPK-GQIGAYEAALMNTKMAIPEQPLE 565 APRG H+ P W R+P + A AL+ EQ + Sbjct: 318 APRGETIHYVR------ANPGTDTPAKW--KAREPTFPNLFAVARALVG------EQLAD 363 Query: 566 ILRTLHSFDPCLACS--THVLGDDGSELISV 594 + + S DPCL+C+ ++ + + + Sbjct: 364 VPVAIASIDPCLSCTDRVAIIDSETGKKRVL 394 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG ++ D +I +RG+E L R DA RICG+C H LA+ Sbjct: 12 EGEAELKIYQKD-GIIDFVEIFFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLAT 70 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM----DWIDVLDALKADPR 143 AIE+A+ +K+ A I+R+I +H+ FY D +L AL + Sbjct: 71 AKAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKK 130 Query: 144 KTSELAQSLSSWPKSSP 160 + +A +P +S Sbjct: 131 ISKIIAIIGGQFPHNSY 147 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 68/395 (17%), Positives = 128/395 (32%), Gaps = 64/395 (16%) Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLV 260 + H+L+AL +I + G H + + ++ A + + Sbjct: 43 LVNRHFLDALVIN---PRICGICG----HAHLLATAKAIENALNLKITKKAEILRDITSG 95 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320 II + + P + + I +S + G FP S + Sbjct: 96 LEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQFP-------HNSYI 148 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 +PGG + +++ + + ++++E + Y ++ H + + Sbjct: 149 IPGGVTCDLTNLDIIKIKNL-LKKLREDI----YTIIDENGKSHDLEKFFENLPKNIGKS 203 Query: 381 GSDT-------------NIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 + + E S+ K + EVGPLAR L Sbjct: 204 LNKFLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPLARNLQNK------- 256 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + + S RI R +E L+ +++ ++ S Sbjct: 257 --------TINTIYEKYQDSIYTRIFARLYEILLIINY-------LIKEIEDLDITQKSF 301 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 ++ T GV EAPRG+L H I + KI Y V+P+ + S K + A Sbjct: 302 LNYKKRTC---GSGVSVIEAPRGSLIHKIKIENEKIKFYDIVMPSQFYLSN-GTKEKPSA 357 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + AL+ ++ + FD C C TH Sbjct: 358 SQMALIREEIKFIDT------IFKCFDICAVCVTH 386 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 3/125 (2%) Query: 14 NAGRR-LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG-RDPRDAWA 70 G+ + + P +E + ++ + + + RG+E + + + + Sbjct: 158 EEGKTVIPIGPFYPSLEEPAYFRLIVDGEEIADFDYRGFYVHRGIEKLAESVLNYQQIPF 217 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 ERICG+C VH+ A A+E A GI++P A IR++ L H HL+ A + Sbjct: 218 LAERICGICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLLWVGLAAHIV 277 Query: 131 WIDVL 135 D L Sbjct: 278 GFDTL 282 Score = 60.2 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 60/171 (35%), Gaps = 27/171 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+AR + M++ + +PL+ R + R E + ++ Sbjct: 373 GPVARGSGINIDMRTNFPYAAYPMLN-IRIPLNKSGDVWARTIVRLEEILISINIIR--- 428 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCV 529 +++ N+ G + K EP V + EAPRG L H+ +G+ + Sbjct: 429 -QILENIPEGPTSIK-ISKIEPWK-----EAVSYIEAPRGQLFHYVMTGPEGRPYRWSVR 481 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 P+ N A L +A + S DPC +C+ Sbjct: 482 APSYQNY---------QALSVMLKGASIAD------APLIIGSIDPCFSCT 517 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 5/133 (3%) Query: 3 TQYETQGYTINNAGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 + +T+ + + P+ IE + + + ++ RG+E + Sbjct: 197 AEVKTEYRETPEGTTLVPMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGE 256 Query: 62 GR-DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 GR ERICG+C H+++ A+E + +PD A IR +ML H+HL Sbjct: 257 GRLTYNQVLFLAERICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHL 316 Query: 121 VHFY---QLAGMD 130 + L G D Sbjct: 317 LWVGIAAHLVGYD 329 Score = 57.5 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 30/189 (15%) Query: 411 GPLARTLIAY--HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP AR + D AT ++ +P+ L R+L R E + + Sbjct: 422 GPTARASGRRIDTRLDQATKTAMAYNEVDFKVPVYKEGDVLARVLVRMDE----LFESLW 477 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQ 527 ++L+ + G++ + P +GFTEA RG + H+ K+ ++ Sbjct: 478 IVEQLIDQMPGGDIMVPIGD------LPEYEEALGFTEAHRGEVVHYVMTGEKNKVYRWK 531 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS--THVLG 585 PT + A L +A + S DPC +C+ + Sbjct: 532 VRAPT---------YNNLPAVPEMLKGYHVAD------APLIIASIDPCYSCTERVQFVD 576 Query: 586 DDGSELISV 594 + ++ + Sbjct: 577 VETGKVKVL 585 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 46/94 (48%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 R + D+ + ++ G RG+E +++G A E+ICG+C+ H SV Sbjct: 30 RVRFFVEDEIIKDAEITIGVNHRGIERVMEGLPVEKANMLTEKICGICSNSHTWNSVRTA 89 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 E +G++VPD A IR I+ H HL++ Sbjct: 90 EKGLGVEVPDRAVYIRVIVGELERLHSHLLYLGH 123 Score = 55.2 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 55/145 (37%), Gaps = 28/145 (19%) Query: 450 GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR 509 ++L R E A + + +L G + S E + + + E PR Sbjct: 262 AQLLMRVFEIFEAI----KIVRQAIRDLPEGKITDRSWEMIDTDLIES------YIEVPR 311 Query: 510 GALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRT 569 G L H AI DG++ P+ N IGA + A ++ + + L I++ Sbjct: 312 GTLYHSYAIEDGRVRHCIIRTPSMSN---------IGAMQYACIDNHITDGQ--LCIVQC 360 Query: 570 LHSFDPCLAC---STHVLGDDGSEL 591 DPC C + V + ++L Sbjct: 361 ----DPCFTCSDRAIEVYDTNYNKL 381 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 3/109 (2%) Query: 19 LVVDPI--TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + + P+ T +E H R + I D+ + + G +RG+E+I++G P E+IC Sbjct: 10 IAIGPVHPTMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 G+C+ +H +V E I+VP+ A IR I+ H H++ F Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGH 117 Score = 52.1 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 25/182 (13%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP AR + V + R+ R +E + ++ Sbjct: 220 GPTARGSGIHSDMRKMGQVPVYDNFEFEEIVFDDGD-VFSRLAVRFYECFESVKIIR--- 275 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCV 529 + + +L N + + P + + EA RG + + + +G++ + Sbjct: 276 -QGLKDLPNLDKRIYNPNYELKEFKPIDV----YNEAQRGQVYYSYGLDENGRVRQVKIR 330 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGS 589 PT N + EA L ++ E + S DPC C+ ++ + Sbjct: 331 TPTATNLACM---------EAILPGHHVSDAE------LIIASCDPCFTCTDRMIVVKEN 375 Query: 590 EL 591 ++ Sbjct: 376 KI 377 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 12/188 (6%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG E+ + + V+ + G + R +E R VER CG+C+ H+ A Sbjct: 16 EGEY-IELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLVERTCGICSFHHSWAY 74 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTS- 146 A+E A G++VP+ A IR + H HL++ +A D L R+ Sbjct: 75 CLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFMFTWSGREAVM 134 Query: 147 -----ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGG-----QLGIFRNGYWGHPQYKLPP 196 ++ + G DV + ++ LG+ W L Sbjct: 135 DMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDTWSKDASILAR 194 Query: 197 EANLMGFA 204 N+ + Sbjct: 195 TKNVGIVS 202 Score = 58.3 bits (139), Expect = 8e-07, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 55/172 (31%), Gaps = 28/172 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR +V ++ + L R R E + ++ Sbjct: 212 VGPTARGSGIREDLRKTAPYAVYPLLDFDLVVLDDGD-VWSRTFVRVLEVLESIKIIRQV 270 Query: 470 FDKLMTN-LKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL-GHWAAIRDGKIDLYQ 527 DK+ +KN K EP +G EAPRG L H K + Sbjct: 271 LDKMPAGQIKNPKPVL----KIEPNDV------IGRVEAPRGELAYHLITDGTDKPGRLK 320 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 PT N A E + + +A P+ + DPC++C Sbjct: 321 IRTPTLINLP---------ASEHMMRGSNLADA--PVIVGHI----DPCMSC 357 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 48/97 (49%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ + D+ VI G + RGLE +++ +D ERICG+C+ H+L Sbjct: 20 LHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVAERICGICSFGHSLGYAET 79 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 +E +G++VP A +R I+ H HL+ A Sbjct: 80 VEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLGLAA 116 Score = 45.2 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 59/174 (33%), Gaps = 26/174 (14%) Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGP AR + + L R+ R E + +Q Sbjct: 212 CMVGPFARASNVKFDCRMLGNGAYGE-LENFQPILDDEGDCYARVRVRCKEVIQSIDIIQ 270 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLY 526 +L+ + + + S T P + E PRG ++A K ++ Sbjct: 271 ----ELIAKIPHDGIGERSK-----LTPPDGAQAANVLEQPRGECYYYARGNGSKNLERM 321 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 + PT+ N + G + A E ++A IL T+ DPC++C+ Sbjct: 322 RMRTPTSQNLA-----GLVAACE----GAELADVPN---ILLTI---DPCISCT 360 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 108/298 (36%), Gaps = 39/298 (13%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R E + + ++ V G RG+E + R+ ERICG+C+ H A V Sbjct: 21 IRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICGICSISHPYAFVIG 80 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA---GMD------------WIDVL 135 E A+GI+ P A IR I+ H H++ +A G D +D+L Sbjct: 81 SEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEIGFDSLLFWTWKGREKVLDIL 140 Query: 136 DALKADPRKTS---------ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY 186 +A+ + S +L +S K Y+++ +K+ + R Sbjct: 141 EAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEFTEHMKEVFLSDPVYKARTRG 200 Query: 187 WGHPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVFGGKNPHPNWIVGGMPCAINI 243 + + NL+G L Q +A K P IVG Sbjct: 201 VAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADIDVKAVVPQDIVG-------- 252 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI----GTGLS 297 + G V M R+ ++ + I+N+ LAI + ++I G G+ Sbjct: 253 EARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIPNYIALLNKIKKTEGEGIG 310 Score = 54.0 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 71/203 (34%), Gaps = 41/203 (20%) Query: 410 VGPLARTL---------IAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQ 460 VGP AR I Y V++V T+ RI +E + Sbjct: 215 VGPTARAAGLRMDIRQDIPYDAYADIDVKAVVPQDIVGEARGDAYDVTMVRI----YEIE 270 Query: 461 WAAGKLQYFFDKLMTNLKNGN-LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR 519 + ++Y D NL G LA + TE G+G EAPRG + H+ Sbjct: 271 QSLDIIEYCID----NLPEGKILAIPNYIALLNKIKKTEGEGIGAHEAPRGEVVHYFRYD 326 Query: 520 DGK--IDLYQCVVPT--TWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDP 575 + +++ + P+ N+ L+ ++A I + DP Sbjct: 327 GTRDGPAVWKVIAPSYNNINSWGYC-----------LLGAEVAD------IPVVVAYIDP 369 Query: 576 CLACS--THVLGDDGSELISVQV 596 C+ C+ V+ D +++ + Sbjct: 370 CMCCNDRVAVVKDSTGKILDYSI 392 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + + PI ++ +R E + + ++ V G RG+E + R+ ERICG Sbjct: 8 IPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLYLSERICG 67 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 +C+ H A V E A+GI+ P A IR I+ H H++ +A D L Sbjct: 68 ICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEMGFDSL 125 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 28/178 (15%) Query: 410 VGPLAR-----TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP+AR I A + R + ++ + R +E + + Sbjct: 215 VGPVARAAGIRMDIRQDMPYDAYADIDVRAVVPQDIVGEAKGDAYDITMVRIYEIEQSLD 274 Query: 465 KLQYFFDKLMTNLKNGN-LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR--DG 521 ++Y D NL G LA + T+ +G EAPRG + H+ DG Sbjct: 275 IIEYCVD----NLPEGKILAIPNYPALLAKIRRTKGEAIGAHEAPRGEVVHYLKFDGRDG 330 Query: 522 KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 + + P+ N + P L+ ++A I + DPC+ C Sbjct: 331 PSVW-KVIAPSYNNINSWAPL---------LLGAEVAD------IPIVVAYIDPCMCC 372 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 116 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 15/138 (10%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 +E + + ++ + ++ V G RGL+ I R+ ERICG+C+ H Sbjct: 20 LEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERICGICSFSHNHT 79 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL---------------VHFYQLAGMDW 131 A+E+A GI+VP+ A IR I+ H HL +H LA Sbjct: 80 YTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVLHLTWLARERV 139 Query: 132 IDVLDALKADPRKTSELA 149 +DVL+A+ + S + Sbjct: 140 MDVLEAISGNRVNYSMVT 157 Score = 59.0 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 62/193 (32%), Gaps = 25/193 (12%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS------TLGRILCRAHEAQWAA 463 VGP AR + V + + + R R E + Sbjct: 218 VGPTARASGLKVDARWSERLGVYPDLGVKPVMPQDVTGEKPHGDVFDRAAVRIGEIYQSL 277 Query: 464 GKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKI 523 L++ D++ + G+G EAPRG L H+ + G Sbjct: 278 DMLEHALDQMPEG--KIKTFPKDNILVAKLKIMVDGEGIGRYEAPRGELVHYVRGKKGSD 335 Query: 524 DLYQCVVPTTWNASPRDPK-GQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS-- 580 P W PR+P + A + ++A + + S DPCL+C+ Sbjct: 336 K------PLRW--KPREPTFPNLFAVAKGVTGDQVAD------FVLAVASIDPCLSCTDR 381 Query: 581 THVLGDDGSELIS 593 V+ D +++ Sbjct: 382 VAVVQDGKKRILT 394 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 115 bits (288), Expect = 4e-24, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 44/93 (47%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + ++ + ++ V G + RG+E + R VERICG+C+ HA V A+E Sbjct: 172 LVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVERICGICSTSHAWCFVEAVERL 231 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 + ++VP A +R ++ H H + + Sbjct: 232 LNMEVPRRAAYLRTLVAELERIHSHALWLGLVG 264 Score = 49.4 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 63/203 (31%), Gaps = 37/203 (18%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG-- 450 RYS A ++ VGP+ R GD V ++ + + S G Sbjct: 349 GRYSLDDARKY----CAVGPVRR-----AAGDPFDVRRIEPYGAYPEVEFEVPTSNEGDV 399 Query: 451 --RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 I R E +A +Q +K+ K T P E EAP Sbjct: 400 YNLIRVRVKEVVESASIIQQLVEKM-------PSGNPVPPKPFMGTVP-EGEAYSRIEAP 451 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 RG L ++ + T N P K + + K+ + + Sbjct: 452 RGELFYYVKANN------------THN--PYRVKVRTPTLANIQLAAKILEGQTLSDFPV 497 Query: 569 TLHSFDPCLACS--THVLGDDGS 589 + S DPC +C ++ G Sbjct: 498 VVTSIDPCFSCMDRVTIIDLSGK 520 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Query: 12 INNAGRRLVVDPITRI-EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 ++ + + PI + + +R ++ ++ + + + G + RG+E I++G+ Sbjct: 1 MSENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIH 60 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 ER+CG+C+ VH + IE I++PD A +R + H HL+ Sbjct: 61 LAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLI 111 Score = 48.6 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 30/192 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+ R + D S + + + + R++ R E + ++ Sbjct: 215 VGPICRGS-GLPESDWRLRHSTYQELKFKPVWREEGDN-FARMMVRHEEIIESVRLIREA 272 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQC 528 + +G++ + K W EAPRG + + I D G I Sbjct: 273 LEHYEEC--SGDIRVKAEIKGGKGEWRN--------EAPRGEVTYRMEITDGGIIKRIMI 322 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH--VLGD 586 PT N AY+ L + + S DPC++C+ V Sbjct: 323 RTPTVMNLE---------AYKYMLKTCPTVA-----DAVSAYTSIDPCVSCTERCIVAVK 368 Query: 587 DGSEL-ISVQVR 597 DG E+ IS++ R Sbjct: 369 DGKEIPISIKFR 380 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 47/94 (50%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 R + + D+ V ++ G RG+E I++G A A E++CG+C+ H S Sbjct: 37 RVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVG 96 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 E A+GI++P+ A +R + H H+++ Sbjct: 97 EGALGIEIPERAVYLRVLAEELERLHSHMLYLGH 130 Score = 55.6 bits (132), Expect = 6e-06, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 49/129 (37%), Gaps = 25/129 (19%) Query: 452 ILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGA 511 IL RA E + ++ +++ NL G + T + + + + + E PRG Sbjct: 271 ILMRATEIFESTKIIR----QVIKNLPKGPIVTRDWDLVDSPVYKS------YIEVPRGV 320 Query: 512 LGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLH 571 H + DGK+ P+ N IGA + + + + + + Sbjct: 321 CYHSYGLEDGKVRHSIIRTPSMSN---------IGAMQESCIGHPIQDAQ------LAIV 365 Query: 572 SFDPCLACS 580 S DPC C+ Sbjct: 366 SCDPCFTCT 374 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 15/138 (10%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 +E + + ++ + ++ V G RG++ I R+ ER+CG+C+ H Sbjct: 19 LEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMCGICSFSHNHT 78 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL---------------VHFYQLAGMDW 131 V A+E+ GI+VP+ A IR I+ H HL +H LA Sbjct: 79 YVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVLHLTWLARERV 138 Query: 132 IDVLDALKADPRKTSELA 149 +DVL+A+ + S + Sbjct: 139 MDVLEAVSGNRVNYSMVT 156 Score = 62.1 bits (149), Expect = 6e-08, Method: Composition-based stats. Identities = 44/198 (22%), Positives = 77/198 (38%), Gaps = 32/198 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST--------LGRILCRAHEAQW 461 VGP AR + K D+ E + P++ T R+ R E Sbjct: 217 VGPTARG--SGIKEDSRWSEQLGVYPDLGIKPVTPEDVTGEKARGDVYDRMAVRIGELWM 274 Query: 462 AAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT--ECRGVGFTEAPRGALGHWAAIR 519 + L++ D++ G + T + A + G+G EAPRG L H+ + Sbjct: 275 SLDLLEHALDQM----PEGKIKTFPKDNILVAKLKLLGDGEGIGRYEAPRGELVHYVRGQ 330 Query: 520 DGKIDLYQCVVPTTWNASPRDPK-GQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 G+ P W PR+P + AL ++A ++ + S DPCL+ Sbjct: 331 KGRDG------PVRW--KPREPTFPNLFTIAKALEGNELAD------LVVAIASIDPCLS 376 Query: 579 CSTHV-LGDDGSELISVQ 595 C+ V + +G +++ + Sbjct: 377 CTDRVAIVKEGKKVVLTE 394 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 46/92 (50%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 ++ ++ + V+ + G M RG+E I + + VERICG+C+ H A + A ED Sbjct: 23 KIKLDGERVVDIEMETGWMHRGIEKISEESTFDQSIFVVERICGICSASHPFACINAFED 82 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 I+VP A IR+++ H HL+ Sbjct: 83 IGEIEVPLKARYIRSLIGELERVHSHLLWLGL 114 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 35/193 (18%) Query: 408 MEVGPLAR---TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP AR I K + + + + + R E + Sbjct: 212 CAVGPTARASGVAIDVRKDEPYAAYDLLDFGVVVREEGD----IFAKTVVRILEVFESIK 267 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KI 523 ++ +KL + G+G EAPRG + H+ + Sbjct: 268 MIRQIIEKLR---------KVKGPIYNDVKEIPAGEGIGRHEAPRGEVFHYIRTDGSNRP 318 Query: 524 DLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC---S 580 ++ P+ N Y+A+ + E ++L TL S DPC C S Sbjct: 319 VRHKIRAPSYVNIPT---------YKASCIG------ENLADVLITLASVDPCYCCTERS 363 Query: 581 THVLGDDGSELIS 593 + + G E+ S Sbjct: 364 VRLQTEKGMEITS 376 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 112 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 34/199 (17%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 E ++ P+W+G E L RT ++SAL L R Sbjct: 213 EDAGFLARPQWQGRCYESSSLTRT--------------CSPLLSALKPLHGNG--LLRRT 256 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + R E +L L+ G+ A +P + + GVG EA RG L Sbjct: 257 VARLTELC-----------RLFEALRQGD-DGALLAALQPFSAAQDGMGVGAVEAARGRL 304 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS 572 H ++ +I Y + PT WN P+ G L + L+ + S Sbjct: 305 LHRVSLEGQQISHYAILAPTEWNFHPQ------GVVAQGLAGLQGDRQAVLLQAHHVIES 358 Query: 573 FDPCLACSTHVLGDDGSEL 591 DPC+ + V+ D EL Sbjct: 359 IDPCVGYALTVVEADEEEL 377 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 111 bits (278), Expect = 6e-23, Method: Composition-based stats. Identities = 60/286 (20%), Positives = 93/286 (32%), Gaps = 55/286 (19%) Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDH------------AWYR----YP 357 + + L PGG + D + + Q + + + H AW + Sbjct: 130 YPQGDWLSPGGGTLTADCDRICAAIDQARQAITQLMGHDIDELVLPIAFQAWLERDPTHL 189 Query: 358 NDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTL 417 V + GI + P G ++ ++ P G E G LA Sbjct: 190 PGLVQAKGWAGIGAAPFLPMPEMGPPDLAARMATDRDGQYLARPDCAGRVFETGSLA--- 246 Query: 418 IAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 + + +DR + L L R+ R +++ L Sbjct: 247 --HWSWHPLISDLMDRFGAGL----------LPRLAARLVALAEGLREMEELVRDL---- 290 Query: 478 KNGNLATASTEKWEPAT--WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 K EPA G+ TEA RG L H + DGKI YQ + PT WN Sbjct: 291 -----------KPEPACSLPGLSGEGLTLTEAARGLLAHRVVLNDGKISQYQILAPTEWN 339 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 P G AL A P+ + +++ DPC+AC+ Sbjct: 340 FHPE------GPLARALHGLP-AGPDLEWKARLLINALDPCVACAI 378 Score = 46.0 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMF---RGLEIILQGRDPRDAWAFVERICGVCTGVHA 84 E + + + D V + M R R P + + + +C A Sbjct: 4 EAGLSVSLRVRDGAVAAVLIRSTRMVQAARLFAK----RPPTEVLHLLPTVFSLCGTAQA 59 Query: 85 LASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 + + A+E A I R +++ +H + Sbjct: 60 VTGLNAMEKAAAITASPAQKAARTLLVLAETVTEHGL 96 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 30 HMRCEVNINDQNVITNAVSCGTMFRGLEIILQG-RDPRDAWAFVERICGVCTGVHALASV 88 H R ++ + V + RG+E + + D ERICG+C VH+LA Sbjct: 187 HFRL--YVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGICGCVHSLAFC 244 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY---QLAGMDWI 132 A+E+ G+ VP A IR IML H H + L G D + Sbjct: 245 QAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTL 291 Score = 44.4 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 36/177 (20%) Query: 410 VGPLART----LIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGK 465 VGP+AR + A A + VD + GR++ R E + Sbjct: 381 VGPVARGGGVDIDARRDHPYAAYDRVD-----FKVITHNTADVWGRVVVRMLEVFESINI 435 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI--RDGKI 523 ++ FDK+ ++ T P G EAPRG H AI D + Sbjct: 436 IRQCFDKMPQGPLVADITT---------ELPAGRVGYTSIEAPRGE-SHHFAITGDDNRP 485 Query: 524 DLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 ++ PT N +G A + + ++A + L + DPC++C+ Sbjct: 486 RRWRARAPTYQNL-----QGIP----AMIKDQRIADMQISLGGI------DPCMSCT 527 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 13/124 (10%) Query: 14 NAGRRLVVDPITRIEGHMRC------EVNINDQNVITNAVSCGTMFRGLEIILQ--GRDP 65 G+R+ + P H E+ + + V+ + + RG+E + + + Sbjct: 164 PTGQRIPIGPY-----HPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNY 218 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 + ERICG+C VH+++ ++E A I VP+ A IR+I+L H HL+ Sbjct: 219 QKIPFLAERICGICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGV 278 Query: 126 LAGM 129 + + Sbjct: 279 VCHL 282 Score = 60.6 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 30/188 (15%) Query: 410 VGPLART--LIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGP+AR L + D D +P+ L R+L R E + Sbjct: 378 VGPVARGSGLDRDVRRDYPYAAYRD---VYFKVPVYNEGDNLARLLVRIDEVFESI---- 430 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQ 527 Y ++L+ L G + E P G+G EAPRG + H G+ ++ Sbjct: 431 YILEQLIDKLPGGPIMA------EKLEVPEGVIGIGNVEAPRGEVIHVTITGHGRPYRWR 484 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 PT N A + L + +A T+ S DPC +C+ ++ D Sbjct: 485 VRAPTYQNIP---------ALKIMLRDAPLAD------APLTIASIDPCFSCTDRIVIVD 529 Query: 588 GSELISVQ 595 + Sbjct: 530 LRSNRRFK 537 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + ++PI R ++ ++ + V + G + RGLE + D A ER+CG+ Sbjct: 13 VWIEPI-------RLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVCGI 64 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 CT H+ A+E + +++P A +IRNIML H HL+ Sbjct: 65 CTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLL 107 Score = 44.0 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 24/170 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR G V + L + + + R+ + Sbjct: 211 VGPIAR-----GSGIPYDVRIDAPYLLYGELKMKHVVEEGCDVWARSIVRVRELFQSIDL 265 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 +L+ L+ + K P + G E PRG L ++ + K V Sbjct: 266 IRQLVPMLEGLPDDILAKSKTMP-----DGDGFARVEPPRGELFYFVRGKKSKELDRVKV 320 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 +T+ P AL+ + Q ++ S+DPC+ C Sbjct: 321 RTSTYANGP------------ALI--PVIKGCQLADVGPITISYDPCIGC 356 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 1/93 (1%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQG-RDPRDAWAFVERICGVCTGVHALASVYAIE 92 + + +I + RG+E + D ER+CG+C VH+ A+E Sbjct: 193 RLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYCMAVE 252 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 DA GI++P A IR+IM+ H HL+ Sbjct: 253 DAAGIEIPPRAKYIRSIMMELERLHSHLLWLGL 285 Score = 52.9 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 55/184 (29%), Gaps = 29/184 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMS-ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP AR + DA R L R E + + ++ Sbjct: 385 VGPTARA--SGVHIDARADYPYAAFPDLDFKPSFHEGGDIWARTLVRVDEVRSSVDLIK- 441 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQ 527 +++T L G + P G G EAPRG H+ +D + ++ Sbjct: 442 ---QMITKLPEGEIMAGFGP------IPAWREGYGIAEAPRGECVHYVQTGKDNRPYRWR 492 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 T Q+ A L + + S DPC +C+ VL D Sbjct: 493 VRAAT---------YPQLQAVPLMLKGMSIGD------FPIIIGSIDPCFSCTERVLTVD 537 Query: 588 GSEL 591 Sbjct: 538 TKSK 541 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 48/93 (51%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ D+ VI S + RGLE +++ RD D +RICG+C+ +H+L A Sbjct: 20 IHFDLVTEDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHVADRICGLCSFMHSLGYCQA 79 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 +E+ + I+VP A +R+I H H+ Sbjct: 80 VEEIMSIEVPQRALYLRSIWAELSRIHSHIFWL 112 Score = 44.4 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 29/172 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + D + + + R R E A ++ Sbjct: 214 VGPMARA--SGLAIDMRALGYAAYKYLEVEPVVESAGDCHARCRVRIREIFHAIDLIRQA 271 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQC 528 K+ + T + E PRG + H+ + + ++ Sbjct: 272 VGKI-----------PAGPVDVKVTGTPDGEYYSRVEQPRGEVIHYVKGNGARFLQRFRV 320 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT N K+ Q ++ + + DPC++C+ Sbjct: 321 RVPTFSNIPAM---------------VKVLKGSQLADVPNIILTLDPCISCT 357 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 3/95 (3%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R ++VI RG+E +G+ DA ER+CGVC+ HA+ Sbjct: 183 IEPGHFRFFTF--GEDVINLQAQLFYTHRGIEKTAEGKHFLDAVLVAERVCGVCSASHAV 240 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 + AIE GI P A IR ++L ++H+ Sbjct: 241 SYAQAIESLAGINAPLRARYIRTVLLEMERLYNHV 275 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 1/122 (0%) Query: 15 AGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + + V P+ +E M + ++ + V++ ++ G + RG+E + R+ E Sbjct: 2 STYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTE 61 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 R+C +C+ H A+E G+ VP A +R I T H+ + LA + D Sbjct: 62 RVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFD 121 Query: 134 VL 135 L Sbjct: 122 SL 123 Score = 46.7 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 57/172 (33%), Gaps = 27/172 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 +GP+AR + +V + + L R + R EA + G ++ Sbjct: 214 MGPVARGSGHAYDVRKQAPYAVYDRLD-FEMALGEHGDVWSRAMVRWQEALTSIGLIRQC 272 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQC 528 + K P V TEAPRG L ++ + + + Sbjct: 273 LRDMPDG----------PTKAGPVPPIPAGEAVAKTEAPRGELIYYLKTNGTDRPERLKW 322 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT N + + +++ I ++S DPC++C+ Sbjct: 323 RVPTYMNWDALN---------VMMAGARISD------IPLIVNSIDPCISCT 359 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 41/93 (44%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 + ++ + + + RG+E + + + +ERICG+C+ H + Sbjct: 23 ANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLENIYLLERICGICSHAHTTSFAIG 82 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 +ED + + VP AN IR ++ H H++ Sbjct: 83 VEDLLDLDVPRRANYIRTLIGELERIHSHMLWL 115 Score = 53.3 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 34/174 (19%), Positives = 54/174 (31%), Gaps = 21/174 (12%) Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 GP+ R G V + + I T G +L R + Sbjct: 215 CAAGPVGR-----ASGLPVDVRRDAPYAAYDEMDFDVITDTAGDLLARTTVRIREIAESI 269 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLY 526 + ++ +G+L + E V EAPRG L H+ + Sbjct: 270 SIIRQAAADIPDGDLKASPKPVQALLAQIPEDDVVSRYEAPRGELIHYIRADGTDTPERV 329 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT N P AL + +A P+ + DPC++C+ Sbjct: 330 HIRVPTLAN-WP--------TVVEALRGSYIAD--TPIVVAGI----DPCISCT 368 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 4/98 (4%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R ++ + + V+ V G RG+E I++G + A ER+CG+C+ H + + Sbjct: 42 LRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCGICSHAHNMCFIGG 101 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV----HFY 124 +E +R ++ HL+ +FY Sbjct: 102 VEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFY 139 Score = 51.0 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 29/182 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR + D E V + + + L RIL R E + ++ Sbjct: 236 VGPQARAS-GVPESDMRLQEPVYPELGFKPVYRKEGDN-LARILVRYDECLQSIELIERI 293 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQC 528 D+L + E + R EAPRG L + + G + Sbjct: 294 VDEL--------PEGRHRRELEVNAGHVDNR----VEAPRGELVYDMELAPGGVVKRVTI 341 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 P+ N EA + + + T S DPC+AC+ + D Sbjct: 342 RTPSVPNIR---------VLEAIAPGSP-----SIADAVATYASLDPCVACNERFVVIDE 387 Query: 589 SE 590 E Sbjct: 388 RE 389 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 +N + + + G RG+E + R+P +RICG+C HAL A+E Sbjct: 26 TFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICGICGVHHALVFAQAVEQ 85 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLVH 122 I+VPD A +R I+ H++ Sbjct: 86 IADIEVPDRAYYVRTIIAEFERIQSHILW 114 Score = 58.7 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 18/150 (12%) Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 RI+ R E + + ++ ++ LA K EA Sbjct: 260 VYDRIIVRIFEIKQSIDIIRQCMKQMPEG---PVLAEEKYAKLLMNLKKASGEAFARVEA 316 Query: 508 PRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 PRG H+ + +GK + P W K + Y + ++ EQ +I Sbjct: 317 PRGEDMHYVRM-NGKQE-----APEMW-------KVKASTYSNQMAWVEILQGEQIADIP 363 Query: 568 RTLHSFDPCLACS--THVLGDDGSELISVQ 595 + S DPC++C+ V+G DG+ I + Sbjct: 364 IIVASIDPCMSCTDRVAVVGQDGNAGIMTK 393 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 104 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 ++ + D+ V + G R + +++ RD ER+CG+C HAL+ A+E+ Sbjct: 130 KMAVEDEVVKKADLKLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVEN 189 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLS 153 + VP A+IIR ++ HL+ L D + L R ++ SL Sbjct: 190 IGQVTVPKRADIIRTMICEMERIQSHLMAIGILG--DLVGYKTMLMQFLRIREDIQDSLE 247 >UniRef50_A4YF90 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF90_METS5 Length = 379 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 72/185 (38%), Gaps = 40/185 (21%) Query: 403 WRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWA 462 + G +EVGPLA+ L + D M+ L+ + S L R L R A Sbjct: 223 YDGTLVEVGPLAQAL------------TFDDMIVKLHRDMGP--SPLLRELARVRVAAKL 268 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK 522 LQ + E G+G+ E+ RG L H ++D K Sbjct: 269 ILGLQDL-------------------EIESEGLHIRGDGIGYLESIRGVLVHQVKVKD-K 308 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + Y+ + PTT+NASP GA E A++ + P EI + S D C + Sbjct: 309 VVEYRVIQPTTFNASP------GGALENAVLGIPVRNYRNPWEISLAVSSLDSCFITNVE 362 Query: 583 VLGDD 587 V DD Sbjct: 363 VYLDD 367 Score = 71.8 bits (174), Expect = 8e-11, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 8/97 (8%) Query: 33 CEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIE 92 +V I+D V+ A S G RG E + G+DPR+ + R+ C H A + A+ Sbjct: 12 LKVKISDGKVVY-AKSSGNKLRGYERMFIGKDPRELPDIIPRVLSTCAQSHTFAYIKAVG 70 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 + +N ++I N+M++ ++ H Y Sbjct: 71 N-------NNLDLIGNLMVSLEIIESNIKHPYAYWLP 100 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 5/113 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R + V+ +G+E +L+G+D + VER+ Sbjct: 191 IPVGPVHAGIIEPGHFR--FQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERV 248 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 CGVC HALA A+E G++VP R ++ ++H+ L Sbjct: 249 CGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCA 301 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 16/120 (13%) Query: 23 PITRIEG---------HMRC------EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRD 67 P R+EG H ++ + ++ V G RG+E + QG+ Sbjct: 63 PFDRVEGLHEVPVGPVHAGIIEPGHFRFSVLGERILHLEVRLGYQHRGVEQLFQGKSLEQ 122 Query: 68 AWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 A ER G HALA A+E A+G++VP A +R ++L HL H L Sbjct: 123 ALLLAERAGGE-PVAHALAFCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLF 181 Score = 49.0 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 61/174 (35%), Gaps = 28/174 (16%) Query: 401 PRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQ 460 RW G VGP AR A G + AL + + + G +L RA Sbjct: 273 ARWLGL---VGPAAR---ACGLGRDLRQD------DALYQTFTPVVRSGGDVLARAQVYA 320 Query: 461 WAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD 520 + + D+ + L G +A T P EA RG L +W +R Sbjct: 321 EELRQGFVYLDRFLGALPQGEVANGPTTP-RVDPVPATAEAYSRVEAGRGELFYWVRLRG 379 Query: 521 GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFD 574 +++ + V P+ N A E A+ + P+ P+ SFD Sbjct: 380 NRVERVKIVDPSFKNWR---------ALELAVRGMGL--PDFPI----INKSFD 418 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 101 bits (251), Expect = 8e-20, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 41/89 (46%) Query: 33 CEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIE 92 ++++ D+ V + G R + +++ RD ERICG C HAL+ ++E Sbjct: 162 LKMSVEDEVVKKVDLKLGFNHRSVIKLMERRDYYKDIFLAERICGFCNSHHALSFARSVE 221 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLV 121 D I +P A + R ++ HL+ Sbjct: 222 DIASIDIPPKAKLARTLLCEMERIQSHLL 250 >UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8_RHOCA Length = 503 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 81/207 (39%), Gaps = 8/207 (3%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G R + ++ + + G+E +L+GR + V+R+CG+C H LA+V Sbjct: 35 GQGRVTICLDARGQVRQVQLHLLDLCGVETLLEGRAIAEIPEAVQRLCGLCPVSHHLAAV 94 Query: 89 YAIEDAIGIK-VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A++ G + A +R +M H V Y LA D + D+ A R + Sbjct: 95 KAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLLGFDSEPAR-RGLVD 153 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 +A++ + + + + GG+L G + LP A A Sbjct: 154 VARAFPQLA-TEGVLMRRFGQEVVRAITGGRLRG-AGAVPGGMRRPLPRAARDQLRADVD 211 Query: 208 EALDFQREIVKIHAVFGGKNP----HP 230 + +D+ +++ G NP HP Sbjct: 212 QVIDWAAGALRVLERLHGTNPAFYDHP 238 Score = 82.2 bits (201), Expect = 5e-14, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 65/179 (36%), Gaps = 15/179 (8%) Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGPLAR + R+++ + +Q ++ R E AA ++ Sbjct: 306 YRVGPLARLQVCDLLTSEKAETERQRLLAPGD--GKPLQGSVFHHGARLVELLHAAELIR 363 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLY 526 D + T+ P VG EAPRG L + + G+I Sbjct: 364 DLLD---------DPELLGTDLMADRGAPQR-EAVGVIEAPRGTLLQRYEVDEAGRIRRC 413 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 ++ T N+ D Q G ++ + I + +FDPCL+C+ H LG Sbjct: 414 TLLLSTRNNSRAMDAALQ-GVAAQYCDGRRVTE-DLLAHIEVAIRAFDPCLSCAAHALG 470 >UniRef50_A3CUR5 NADH dehydrogenase (Ubiquinone) n=3 Tax=Methanomicrobiales RepID=A3CUR5_METMJ Length = 362 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 45/90 (50%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 R + + V+ + G M +G+E I++GR ++ ER+CG+C+ VH + + + Sbjct: 23 RLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMFLAERVCGICSVVHNMVFIETM 82 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 E+ I VP A +R ++ H++ Sbjct: 83 EEISDIPVPPRAAYLRVVVNELDRMASHIL 112 Score = 48.3 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 29/171 (16%), Positives = 50/171 (29%), Gaps = 28/171 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR D R + + + + R++ R E + ++ Sbjct: 216 VGPTARAS-GVEDSDLRLRHPTYRELGFTQITRTEGDN-FARVMVRFQEVFQSIDLIRKC 273 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQC 528 + L G EAPRG L + + G++ Sbjct: 274 VETLPEGPIRG------------GGLCKAGEASYAGEAPRGELTYTIKTDEYGRVVDIAI 321 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 P+ N A ++ + ++ T S DPC+AC Sbjct: 322 RTPSIMNI-------------EACAHSMIVDAASIADVTSTFISSDPCIAC 359 >UniRef50_B2HHH7 Formate hydrogenase HycE n=3 Tax=Actinomycetales RepID=B2HHH7_MYCMM Length = 498 Score = 99.1 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 60/115 (52%), Gaps = 8/115 (6%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP---RDAWAFV 72 + V P+ IE GH R ++ ++++ + RG+E + +GR+ R+A Sbjct: 145 IPVGPVHAGLIEPGHFR--FSVIGESILRLKARLWFVHRGVEKLFEGRNALGAREAVELA 202 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 ERI G + H+LA A+EDA+G+ VP+ + +R +++ ++H+ LA Sbjct: 203 ERISGDSSAAHSLAHCLAVEDALGLDVPEPVHRLRALLVELERLYNHVTDLGALA 257 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 98.3 bits (243), Expect = 7e-19, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 42/115 (36%), Gaps = 17/115 (14%) Query: 23 PITRIEGHMRCEVNIN-----------------DQNVITNAVSCGTMFRGLEIILQGRDP 65 P R+EG E+ + ++ +G E I + Sbjct: 164 PFFRVEGEGVFEIPVGPIHAGVIEPGHFRFSAVGDSIFYLDAKLFFTHKGTEKIFETMPY 223 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 A ERICGVC HA AIE I++P A IR I++ ++H+ Sbjct: 224 TKALFLAERICGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHI 278 Score = 42.5 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 26/134 (19%) Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 L RI R E + ++ F+K+ + G L T E P + + + E+ Sbjct: 421 VLARIRVRVDEVYQSIYIIEQCFEKM----RPGPLKTPIKE------LPPYKQALSYVES 470 Query: 508 PRGALGHWAAIRDG-KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 PRG +W G K+ Y+ P+ N P P G +P+ PL Sbjct: 471 PRGENIYWIMTAPGNKLFRYKVRSPSFCN-WPAIPFAVPGNI----------VPDFPL-- 517 Query: 567 LRTLHSFDPCLACS 580 SF+ C +C+ Sbjct: 518 --INKSFELCYSCT 529 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 96.4 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 41/89 (46%) Query: 33 CEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIE 92 + + + ++ ++ G RG+E + + V R+CG+C VHA V A+E Sbjct: 30 LKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICNLVHANCYVRALE 89 Query: 93 DAIGIKVPDNANIIRNIMLATLWCHDHLV 121 + + + + A +R + + H H++ Sbjct: 90 EILDMHPNERAKYLRVLAMEFERVHSHML 118 Score = 56.7 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 62/192 (32%), Gaps = 27/192 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR G V ++ ++P + + G R A + Sbjct: 222 VGPPAR-----ASGVKIDVRVSEKYEVYGDIPFNMVTRNEGDSWARMIVRWDEAIESLNM 276 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLY--Q 527 ++ +L N + P EAPRG L + + DGK Y + Sbjct: 277 AKYILEHLPNDGNPVPDERRLPRRFPP--GEAFTRVEAPRGELT-YYVMSDGKPKPYRLK 333 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS--THVLG 585 P+ N + + + + ++ L S DPC++C V+ Sbjct: 334 IKTPSFTNI---------------INSGYLYVGHTIADLPVILVSLDPCISCMERVTVID 378 Query: 586 DDGSELISVQVR 597 + + V ++ Sbjct: 379 LENNTRRKVPIK 390 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 95.6 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 103/276 (37%), Gaps = 24/276 (8%) Query: 17 RRLVVDP-ITRIEGHMRCEVNINDQNVI-TNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 +++ + P + +E + +++++D ++ + G + RGLE + ++ ER Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLILTER 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHD---------HLVHFYQ 125 +C +C+ H + A+E I+V A+ +R I HLVH Y+ Sbjct: 62 LCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYE 121 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 L D +D + ++ LS+ Y D Q ++ + Sbjct: 122 L-MRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDK 180 Query: 186 YWGH-PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG-------KNPHPNWIVGGM 237 + + + +G +AL+F + A G K P+ + + Sbjct: 181 LFERFCNSEKIKKTKGIGVLTKQQALEFG--VSGPVARGSGINNDVRVKAPYAAYDE--L 236 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 ++++ G V + R +++ I + INN Sbjct: 237 EVRVDLESDGDVYSRMKVRWYDIKNAIKILKNAINN 272 Score = 54.8 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 27/171 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+AR G V + L + + G + R + Sbjct: 212 GPVAR-----GSGINNDVRVKAPYAAYDELEVRVDLESDGDVYSRMKVRWYDIKNAIKIL 266 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQCV 529 + NL +G + TEAPRG L ++ G K + Sbjct: 267 KNAINNLPSGPIHLEKRPHIPAGEATVR------TEAPRGELIYYVKTDGGQKPKRMRWR 320 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT N A E + + + ++ L+S DPC++C+ Sbjct: 321 VPTYMNF---------QALEEMIKGNRASD------VVLILNSIDPCVSCT 356 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 94.9 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 3/96 (3%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 IE +R ++ + + + + G + RGLE + D A ER+C +CT H+ Sbjct: 15 IEP-LRLKLTTDGELIKDVDLEAGYVHRGLEKKFEW-DYNKAAYLSERVCAICTQHHSTC 72 Query: 87 SVYAIEDAI-GIKVPDNANIIRNIMLATLWCHDHLV 121 +E + G+++P A IIR IML H H + Sbjct: 73 FCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFL 108 Score = 44.8 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 49/170 (28%), Gaps = 24/170 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + A + R + + R L R E + ++ Sbjct: 212 VGPVARGSNVPYDVRHAAPHLLYREVKVTPIVEKDGD-CWARSLVRVRELFQSIDLIRQL 270 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 L E + + E + EAPRG L ++ + K Sbjct: 271 V---------PLLDGTPDELFAKSKAMPEGENIARVEAPRGELFYYVRGKKSKELD---- 317 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 K + Y L + ++ +FDPC+ C Sbjct: 318 ----------RVKVRTSTYGNGLGIAPLIKGSHIADVGLITITFDPCIGC 357 >UniRef50_Q8TW35 Ni,Fe-hydrogenase I large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TW35_METKA Length = 205 Score = 90.3 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 58/152 (38%), Gaps = 35/152 (23%) Query: 451 RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRG 510 R + R EA ++ D L + ++ + + C G G EAPRG Sbjct: 23 RNIARILEALLLTRLALHWIDDL----------PTTGTTYKDPSRRSGCSGTGVIEAPRG 72 Query: 511 ALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPL----- 564 L H ++ DGK+ Y+ + T N +P E +++ ++ + E+ Sbjct: 73 TLVHRVSVGSDGKVFNYEIITSTNLNHAP---------IEESMVGERVYVDEKLAAAKRQ 123 Query: 565 ----------EILRTLHSFDPCLACSTHVLGD 586 + R SF+PC +C+ H + Sbjct: 124 LSESERFLLGDACRAARSFNPCNSCAPHAIVK 155 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 89.5 bits (220), Expect = 3e-16, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 7/101 (6%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V++P GH R ++ + V+ + G + +G+E I + ER G Sbjct: 179 VIEP-----GHFR--FSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDN 231 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 H+ A A+E GI+VPD A IR + L ++HL Sbjct: 232 GMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHL 272 Score = 44.4 bits (103), Expect = 0.012, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 11/107 (10%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR G + V + +L + G + R + Sbjct: 377 VGPGAR-----ASGVSRDVRRDHPYAAYSDLNFAVHIRKEGDVNARMQVKIGEIYESMSI 431 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWA 516 ++ + L G + A+ P G+ EAPRG L HW Sbjct: 432 IEQALDRLPAGKIRAAT------GNIPQGRVGISLVEAPRGELLHWI 472 >UniRef50_C2KSR5 Reducing hydrogenase alpha subunit n=3 Tax=Mobiluncus RepID=C2KSR5_9ACTO Length = 430 Score = 88.3 bits (217), Expect = 7e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 3 TQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG 62 Q ET +N ++DP EGH V+++ + + R +E +L G Sbjct: 6 FQGETMKINLNE-----IIDPT---EGH--ITVSVDTKGHRHARFDLQGLPR-VESLLVG 54 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 + +A ER+CG+C H LA A++ +G++V A ++R ++ H + Sbjct: 55 KSAAEALKMTERLCGLCPVAHHLAGTRALDGLVGVRVKSYAEMVRRLLHYGSMIEAHSLR 114 Query: 123 F 123 F Sbjct: 115 F 115 Score = 59.4 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 72/224 (32%), Gaps = 31/224 (13%) Query: 355 RYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLA 414 R ++ FD P ++ GS + + K R+R VGP+A Sbjct: 217 RIAHNGEVLEDFDFSQWPEKIAEEIPGSPAPRPYIVTLGK----KMGRYR-----VGPVA 267 Query: 415 RTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 + + A +L + + L RA + +LM Sbjct: 268 QLSVGKVS-----------TPRAASLQAQWLSAPPDAALARAIISLHVLELSGEIVSQLM 316 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTT 533 +N +L ++ + G + PRG L H + +G I + PT Sbjct: 317 KTSENYHLDEQASTTKQ----WQAGISTGLVDGPRGILAHTYEVNAEGIITRAVILTPTA 372 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 N +P A +T E LE +++ DPCL Sbjct: 373 QN----EPWLAALLTAATTGDTDETRREAALE--QSIREADPCL 410 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 88.3 bits (217), Expect = 8e-16, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G+ + + V+ G + RG E +++ R A + RIC ++ L Sbjct: 16 HGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIPRICVPEPDINELCY 75 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 A+E I VP+ A IR I+L +HL F + G Sbjct: 76 ALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGP 117 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 87.9 bits (216), Expect = 9e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G+ + ++ ++ G + RG E +++ R + A + RIC ++ + Sbjct: 16 HGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIPRICVPEPDINEMVY 75 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 AIE+ GI+VP+ A+ IR I+L +HL+ + G Sbjct: 76 AMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGP 117 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 87.6 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 42/93 (45%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G ++ I + V + G + +G+E I++ R + +R+C + + + A Sbjct: 43 GPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIVYTDRMCYLASITNNEAYC 102 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 A+E +GI P+ A IR I+ HL+ Sbjct: 103 GAVEKLLGITPPERAQYIRVILAELSRIQSHLL 135 >UniRef50_Q1NJU8 NAD-reducing hydrogenase, beta subunit (Fragment) n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NJU8_9DELT Length = 178 Score = 87.2 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 16/152 (10%) Query: 446 QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFT 505 QS R E ++ ++ ++ GVG Sbjct: 31 QSAFHYHYARLIEIIHGLERIGELLNE----------PEILGKRVRATAGANAPEGVGIC 80 Query: 506 EAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPL 564 EAPRG L H I +GKI ++ T N + +G + A AL+ Sbjct: 81 EAPRGTLIHHYGIDEEGKISAVNMIIATGNNNLAIN-QGLLQAA-RALIQNGQFSEGALN 138 Query: 565 EILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 I + +DPCL+CSTH GS +V++ Sbjct: 139 RIEALVRCYDPCLSCSTH---AQGSRPFTVEI 167 >UniRef50_C8XAS3 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XAS3_NAKMY Length = 506 Score = 86.4 bits (212), Expect = 3e-15, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 44/99 (44%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G ++ + V+ + RGLE + GR ER+ G T HALA V Sbjct: 163 GPGHFRFSVVGETVLNLKARLWFVHRGLEKLFAGRAVAAGVELAERVSGDTTVGHALAYV 222 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 A+EDA G+ + A IR I+L ++H+ LA Sbjct: 223 RAVEDASGVTLDPAAQRIRAILLELERLYNHIGDIGALA 261 Score = 42.5 bits (98), Expect = 0.051, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 9/125 (7%) Query: 412 PLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFD 471 A + + D V L+ + R L RA E Q + + Sbjct: 358 ARASGVAVDARFDHPVPGLVYDPAERLSTHPTDGD-VASRFLVRAQEIQSSVRMIAALAG 416 Query: 472 KLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVV 530 ++ + ++ GVG E RG + H + DG++ + V Sbjct: 417 QV-------DTTAPREVGGSTSSAAGVRAGVGIVEGWRGTIVHRVELDADGRLTRVRIVD 469 Query: 531 PTTWN 535 P+ +N Sbjct: 470 PSFFN 474 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 86.0 bits (211), Expect = 4e-15, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R + V+ G + +G+E + GRDP R+ Sbjct: 173 IPVGPVHAGIIEPGHFR--FLALGETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRV 230 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 G T HA A+ A+E A G+ P+ A +R I + +HL Sbjct: 231 SGDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHL 275 >UniRef50_Q2WAW4 Ni,Fe-hydrogenase III large subunit n=11 Tax=Alphaproteobacteria RepID=Q2WAW4_MAGSA Length = 505 Score = 85.6 bits (210), Expect = 5e-15, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V++P GH R + V+ G +G+E +LQG A V R+ G Sbjct: 162 VIEP-----GHFRFHCQ--GEAVVRLEQRLGYQHKGIEGLLQGAPLDKAARIVARVSGDS 214 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 T ++LA A+E A G +VP A+ +R +M +H+ Sbjct: 215 TVAYSLAFARAVEAATGCEVPARAHWLRGVMAEMERVANHV 255 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 ++V PI IE GH R ++ ++++ + RG+E + +G+ + V ++ Sbjct: 170 ILVGPIHAGIIEPGHFR--FSLAGEHILQLEIRHFWKHRGVEKLAEGKTAEEVLEIVPKV 227 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH---DHLVHFYQLAGMDW 131 G + H LA V AIE ++P A IR + + + +Q + Sbjct: 228 SGDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSF 286 >UniRef50_B9L8U2 Ech Hydrogenase, Subunit n=3 Tax=Epsilonproteobacteria RepID=B9L8U2_NAUPA Length = 361 Score = 85.2 bits (209), Expect = 6e-15, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGR-DPRDAWAFVERICGVCTGVHALASVYAIED 93 ++ + V+ G + RG+E R + V R+CG+C+ HA A + IE Sbjct: 24 FETQNEVITDVTVNIGYVHRGIEKAAITRFEYTQLPYLVARVCGLCSITHAGAYTHGIEK 83 Query: 94 AIGIKVPDNANIIRNIMLATLWCHDHLV 121 +GI+ + +R +++ H H++ Sbjct: 84 LLGIETNKKIDYLRMLVVELDRIHSHML 111 Score = 46.3 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 51/172 (29%), Gaps = 28/172 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+AR G + + + T G + R Sbjct: 215 AGPIAR-----ASGLETDARAEYDYLPFEEVGYKLQTRTEGDVWARNMVRFDEIMNSIEM 269 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKI-DLYQC 528 ++ + G + + T+ EAPRG ++ K+ + + Sbjct: 270 CLNILDGIPEGEHRVKVKGRPDGETFVR-------VEAPRGECFYYLKGNKTKVLERVRI 322 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT I + + K + + + SFDPC++C+ Sbjct: 323 RVPT---------YANIPVLKELFVGEKYSDAQA------IVLSFDPCMSCT 359 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 84.9 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V G + RG+E + +G +R+ VC + A Sbjct: 212 HGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEGLHYMQVIPHTDRLDYVCAMTNNYAY 271 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 V A+E +G+ +P+ A +R I+ HL Sbjct: 272 VRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFWL 307 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 69/186 (37%), Gaps = 17/186 (9%) Query: 7 TQGYTINNAGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 + G +N+ L + P T + G +R ++ + ++ G + R E + + Sbjct: 167 SPGDVLNDKYLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPY 226 Query: 66 RDAWAFVERICGVCTGV-HALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV--- 121 + +R+ C+ + + A+E +G+++P A +R I+ DH + Sbjct: 227 NQVIPYTDRL-NYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIG 285 Query: 122 -----------HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRL 170 FY + + L R T + + + G+F +V + Sbjct: 286 TGAMDLGALTSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALV 345 Query: 171 KKFVEG 176 K+ +G Sbjct: 346 KEIRKG 351 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 84.5 bits (207), Expect = 1e-14, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G++ ++ ++ + V+ + G + RG E +++ R RIC L Sbjct: 20 GNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVEDPDHIELTYT 79 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 +A+E GI+ P+ A +R I+ HL+ AG Sbjct: 80 HAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGP 120 >UniRef50_Q2RV77 Putative hydrogenase expression/formation protein HupK n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RV77_RHORT Length = 406 Score = 84.1 bits (206), Expect = 1e-14, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 23/216 (10%) Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 P P I ++ +++ P W GP R G Sbjct: 209 PLLAPTAPDEIKALIGMIDGAAGEAFLARPTWGRCPRATGPAVRL-----AGQPLVARCG 263 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 + + R++ E A L L + G + + Sbjct: 264 ADWGAGITY----------RLVAVLCELALLACALPARIAAL-EAMAEGREDGPARSSGD 312 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 + + GVG EA RG L H +R+G++ ++ + PT WN P+ GA + Sbjct: 313 GVSARSSGEGVGMVEAARGLLIHRVVVREGRVARWRILAPTEWNLHPQ------GALASL 366 Query: 552 LMNTKMAIPEQPLEILR-TLHSFDPCLACSTHVLGD 586 L+ ++ E+ + + + DPC+ C +G+ Sbjct: 367 LIGCPVSGTEEACLLAHWLVLALDPCVPCVITAIGE 402 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 3/94 (3%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R ++ + V+ G +G+E + G RI G T +A Sbjct: 192 IEPGHFRFTMS--GEIVVRMEERLGYTHKGIESLFSGASIDKGMEIAGRISGDSTVAYAY 249 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 A+E+A+GI P A IR +M +H Sbjct: 250 GYALAVEEALGISPPPRAEWIRALMAELERMANH 283 >UniRef50_Q2W6S7 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W6S7_MAGSA Length = 367 Score = 83.7 bits (205), Expect = 2e-14, Method: Composition-based stats. Identities = 43/212 (20%), Positives = 68/212 (32%), Gaps = 35/212 (16%) Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDA 425 +G N G +L + ++ P G E GPLAR Sbjct: 181 MEGFGAAPPNLMPETGPPDLDARLAADDDGAYRTRPDSAGIVFETGPLARQ-----SRRP 235 Query: 426 ATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATA 485 + + + L + R R E A +++ L +G+ Sbjct: 236 LMGLLMSQYGNGL----------MPRFSARMMEMASALREVEDLVQDL-----SGDSGGL 280 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 + + G+G +A RG L H +R+G + Y+ + PT WN P Sbjct: 281 PMAR-------HDGSGLGVVDAARGLLAHRVELREGLLSAYRILAPTEWNFHP------D 327 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 G L PE +L S DPC+ Sbjct: 328 GPLAQGLRGMSGPDPEGRAALLAA--SLDPCV 357 Score = 47.1 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 1/88 (1%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 E + +++ + V T + + + L GR P A + + +C LA Sbjct: 5 ESSLSITLHLAEDRVETVEIGSSRPVQASDR-LTGRRPDQVLALLPNLYSLCGTAQGLAG 63 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLW 115 + A+E+A+GI + R I+ Sbjct: 64 LAAVENAVGIDAAPEQHKARRILCLIEM 91 >UniRef50_UPI0001874346 putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI0001874346 Length = 454 Score = 83.3 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%) Query: 21 VDPITRIEGHMRCEVNINDQNVIT-NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 VDP R +V +D IT + + R ++ +L G+ D +R+CG+C Sbjct: 18 VDPF-----EARLDVYRDDNGAITQVSFDLSGLPR-IDGMLVGKRALDVPDITKRLCGLC 71 Query: 80 TGVHALASVYAIEDAIGI-KVPDNANIIRNIMLATLWCHDHLVHF 123 VH LA V A+ED GI +P A +IR ++ A + F Sbjct: 72 PVVHHLAGVRAVEDLYGISDIPRTAQLIRELLAAGSTLDNLATKF 116 Score = 62.9 bits (151), Expect = 4e-08, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 62/174 (35%), Gaps = 37/174 (21%) Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGP++R ++ +G + A L+ + R+L + + + Sbjct: 277 YRVGPVSRQVVVDKRGISPR--------DAQRQLLADTVAWAKRVLA---DGELLGDHVC 325 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLY 526 K +T ++N + GVG + PRG L H DG I Sbjct: 326 D--PKAVTAIENADFEGHR-------------SGVGMIDGPRGLLVHRYTAGADGIITDC 370 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 Q + PT N + ++ ++ + + +++ + DPCL CS Sbjct: 371 QIMTPTAQN----------EPWLTRMLTEQLCDGGETAGVEKSIWAADPCLPCS 414 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 41/94 (43%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 IEG+ +V ++ V+ G + RG E I++ R A V RIC Sbjct: 28 IEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVPRICVPDPPPMEET 87 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 A+E G++VP+ A IR +ML HL Sbjct: 88 YARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHL 121 >UniRef50_C6HVM5 Putative hydrogenase-3 subunit (HycE) n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVM5_9BACT Length = 512 Score = 82.5 bits (202), Expect = 4e-14, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++ + V+ G +G+ + +GR+ +A RI Sbjct: 158 IPVGPVHAGIIEPGHFR--FSVVGEKVLRLETRMGYTHKGIARLFRGRNLPEAARLASRI 215 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 G +LA A+E+A+ I++ + +R I+L +HL L Sbjct: 216 SGDSAVATSLAFSKAVEEALDIEISEGVRFVRAILLERERIANHLADLGALG 267 >UniRef50_A0L9R4 Membrane bound protein complex subunit mbxL n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L9R4_MAGSM Length = 391 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 44/97 (45%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 I G+M E+ + ++ G + RG E +++ R + V R+C + Sbjct: 40 ITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEPDFNEYC 99 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 A+E+ GI+ P+ A IR ++L + +L++ Sbjct: 100 YAAAVEELAGIECPERARWIRTLILEMGRINSYLMYL 136 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 82.2 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 2/93 (2%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGV-HALAS 87 GHMR V ++ + G + RG+E I + R VER C + + + Sbjct: 362 GHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRIYIKNIPLVERPC-ITDFANYDICY 420 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 V AIE+A+GI+V + A IR I+ HL Sbjct: 421 VKAIEEALGIEVSERAKYIRTILAELCRIGTHL 453 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 81.8 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 79/217 (36%), Gaps = 9/217 (4%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V G M RG E + + RD R R + + L Sbjct: 43 HGVLRLRIVLDGERVQHAEPVIGYMHRGAEKLFEARDYRQIIMLANRHDWLSAFSNELGV 102 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 V A+E +G++VP+ A R ++ +HL+ + + + + + R+ E Sbjct: 103 VMAVERMLGMEVPERAVWTRTLLAELNRVLNHLM--FLGSYPLELGGITPVFHAFREREE 160 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 L + Y F+ LK+ V G G R+ + ++ NL+ Sbjct: 161 LQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWAGRVRDAV-ASVRSRMDVYENLVLGN--- 216 Query: 208 EALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINID 244 + R + V H + G + A +D Sbjct: 217 ---EIFRGRTRDVGVLSAAAVHAYGVSGPIARASGVD 250 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 81.8 bits (200), Expect = 8e-14, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 12/130 (9%) Query: 6 ETQGYTINNAGRRLVVDPITR------------IEGHMRCEVNINDQNVITNAVSCGTMF 53 QG A +R VDP+ G +RC V ++ + + + + G + Sbjct: 45 AAQGDGKPPATQRSEVDPLENEMILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLH 104 Query: 54 RGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLAT 113 RG+E + + + ++ + +R+ + + +A A+E I+VP+ A IR IM Sbjct: 105 RGIEKLAEHKTYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSEL 164 Query: 114 LWCHDHLVHF 123 H + Sbjct: 165 ARISSHCLWL 174 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 80.6 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 3/174 (1%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V++ G M RG E + + RD R R + + L Sbjct: 40 HGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANRHDWLSAFANELGV 99 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 V A+E +G++VP+ A +R + +HL+ + + I + + R+ Sbjct: 100 VLAVERLLGMEVPERATWLRMALAELNRVLNHLM--FLGSYPLEIGAITPMFYAFRERET 157 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLM 201 L +L Y F+ LK+ V G G R G + LP NL+ Sbjct: 158 LQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAAI-GEVRRSLPDLDNLI 210 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 80.2 bits (196), Expect = 2e-13, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 2/131 (1%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V+ G + RG+E I + R +V+R+ V + L Sbjct: 35 HGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRMDYVAAVSNGLGY 94 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A+E I ++ P A +R I+ H+V +D I L L R E Sbjct: 95 CEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGT-HALD-IGALTPLFYTFRDREE 152 Query: 148 LAQSLSSWPKS 158 + + + + Sbjct: 153 VLKIFEKYCGA 163 >UniRef50_C6NX38 Ni,Fe-hydrogenase III large subunit n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NX38_9GAMM Length = 527 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 5/112 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R + ++ G +G+E + G+ P A R+ Sbjct: 174 IPVGPVHAGTIEPGHFRFTCL--GEQIVQLEERLGYCHKGIERLFVGQPPDAALRLAGRV 231 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 G + +A + A+E I++ A +R + L +HL L Sbjct: 232 SGDSSVAYAWSYAMAVESVAEIELSQRALALRGLCLERERLANHLGDLGALG 283 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 79.8 bits (195), Expect = 3e-13, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G ++ + VI G + RG+E + + + A +R+ + + + + Sbjct: 26 HGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESKTYPGAMTLTDRLDYISSMTNNIGY 85 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 A+E +GI+ P A IR ++ HL+ +D Sbjct: 86 CLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWL-ATHALD 127 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 79.1 bits (193), Expect = 4e-13, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 3/95 (3%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R ++ + V + RG+E + +G+DP E + G + +A Sbjct: 185 IEPGHFR--FSVIGETVFNLEIRLFYTHRGIEKLAEGKDPAACVRVAEAVSGDESAANAT 242 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 AIE GI VPD A IR ++ + HL Sbjct: 243 GLCMAIERLSGITVPDRAWHIRTVLCESERICSHL 277 >UniRef50_A1KEQ8 Possible formate hydrogenase hycQ (FHL) n=14 Tax=Actinomycetales RepID=A1KEQ8_MYCBP Length = 492 Score = 79.1 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++ + ++ + RG+E + GR A ERI Sbjct: 145 IPVGPVHAGLIEPGHFR--FSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERI 202 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 G + HALA AIEDA+GI++P + +R +++ ++H LA Sbjct: 203 SGDTSAAHALAHSLAIEDALGIELPHEIHRLRALIVELERLYNHAADLGALA 254 Score = 43.6 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 L R R E +A Q+ + ++ P P+ G+G E Sbjct: 381 VLARYTVRRDEFAASAALAQHIVESHTGPIE-------YAATLHPVGAPSS--GIGIVEG 431 Query: 508 PRGALGHWAAIR-DGKIDLYQCVVPTTWN 535 RG + H I DG+I + V P+ +N Sbjct: 432 WRGTIVHRVEIDVDGRITRAKVVDPSWFN 460 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 78.7 bits (192), Expect = 6e-13, Method: Composition-based stats. Identities = 43/204 (21%), Positives = 78/204 (38%), Gaps = 18/204 (8%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G +R +V N +N+ G ++R LE + + +D VERIC + + Sbjct: 193 GPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVAVERICFMDNPNPMICYS 252 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHL-----------VHFYQLAGMD----WID 133 A+E+ G ++ + A +R I+ T HL +H + + +D ++D Sbjct: 253 QAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLDIREYFLD 312 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSP-GYFFDVQNRLKKF--VEGGQLGIFRNGYWGHP 190 VL+ T+ + +P + +F + +KKF + IF + Sbjct: 313 VLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFMKNPLMNT 372 Query: 191 QYKLPPEANLMGFAHYLEALDFQR 214 + K L A Y A R Sbjct: 373 RAKGNGVFTLDDVAEYYLAGPIAR 396 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 78.3 bits (191), Expect = 7e-13, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 3/116 (2%) Query: 14 NAGRRLVVDPITR--IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +RL P+ R I + + ++ R +E QG Sbjct: 173 PDIQRLPFGPV-RADIVESAQFLFFYIGEGILHYHPRLFYKHRAMEGRFQGATLATGAVL 231 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 ER+ G+ + HALA A+E A+G + P A +R ++ ++HL + L+ Sbjct: 232 AERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYLRVVLAELERLYNHLHYLGHLS 287 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 78.3 bits (191), Expect = 8e-13, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R + + + V + G RG+E +L+G R + A E I G H L Sbjct: 177 IEPGHFRFQCH--GERVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESIAGDTAVGHGL 234 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 A A+E G+ A +R I L +H+ LAG Sbjct: 235 AYAKAVESLAGVAPTARAMSLRGIGLELERIANHVGDLGALAG 277 >UniRef50_A5UWP3 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Roseiflexus RepID=A5UWP3_ROSS1 Length = 358 Score = 78.3 bits (191), Expect = 9e-13, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 37/92 (40%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G R ++I D V+ G RG L DA V RICG C+ H+LA Sbjct: 16 GPQRFILHIADDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVARICGECSFAHSLAFC 75 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 AIE KV A ++R + HL Sbjct: 76 QAIEQVQRRKVGARAALLRVAIAELERTAAHL 107 >UniRef50_Q0F384 Hydrogenase subunit n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F384_9PROT Length = 532 Score = 77.9 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 45/105 (42%), Gaps = 5/105 (4%) Query: 19 LVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++++ G + +G+E +Q + + RI Sbjct: 178 IPVGPVHAGIIEPGHFRFLAV--GEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRI 235 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 G T HA A A E A I VP A+ IR I+ +H+ Sbjct: 236 SGDSTVAHAWAFAQACEYAGQIDVPRRASFIRAILCERERIANHI 280 >UniRef50_A0LSU1 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSU1_ACIC1 Length = 499 Score = 77.9 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 47/130 (36%), Gaps = 25/130 (19%) Query: 16 GRRLVVDPIT--------RIEGHM---------------RCEVNIN--DQNVITNAVSCG 50 G+R + P+T R+ GH E + +++ + Sbjct: 113 GQRSAIPPLTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVF 172 Query: 51 TMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM 110 RG+E + D D ER+ G+ + HALA +A+ED G+ +R I Sbjct: 173 AKHRGIERRFEDLDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIF 232 Query: 111 LATLWCHDHL 120 +HL Sbjct: 233 AELERIANHL 242 >UniRef50_B1ZSF2 NADH dehydrogenase (Quinone) n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZSF2_OPITP Length = 531 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 7/101 (6%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V++P GH ++ + V+ + + +G E + + E I G Sbjct: 186 VIEP-----GHF--LFSVAGEPVLYLQLRMFYVHKGTEKLFESLPITHGVRLAESISGDS 238 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 HA A +AIE A G+ P +R + L +H+ Sbjct: 239 AFAHATAFCHAIERAAGVAAPPRGRALRTLCLELERISNHV 279 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 43/101 (42%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + + + ++ G RG E I + + + +RI + ++ LA Sbjct: 423 HGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAERQHWNQYIPYTDRIDYLAGSLNNLAY 482 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +Y++E G++VP A IR ++ HLV A Sbjct: 483 LYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAH 523 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 77.2 bits (188), Expect = 2e-12, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 1/103 (0%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + + + + G + RG+E + + + +R+ + + V+ + Sbjct: 23 HGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSEDLTYVQSLPITDRMDYLSSMVNNVGF 82 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 A+E +GI++P+ A IR IM HLV +D Sbjct: 83 CVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWI-ATHALD 124 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 44/99 (44%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G ++ E+ ++ + + G + RG+E +++ R + +++ V + + LA Sbjct: 19 HGVLQVELELSGERIERAKPILGYLHRGIEKLMESRTYAQCLPYTDKLDYVSSMNNNLAW 78 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 A+E GI+VP A +R I HLV L Sbjct: 79 CTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIGTL 117 >UniRef50_D2LGL3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LGL3_RHOVA Length = 394 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 61/213 (28%), Gaps = 38/213 (17%) Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +P D Q+L + + ++ AP W G E PLAR+L Sbjct: 215 SPLPAFDRDRLAQRLFDDSQAHFVAAPDWEGAPRETSPLARSL-----DHPLIRALETDD 269 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 L R + L N A ++ P Sbjct: 270 GFGLG--------------ARLAACLVELASVPRRLRDAAATLDAPNHAAPERDETAP-- 313 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 G+ EA RG L H + GK+ Y+ + PT WN P AA Sbjct: 314 ----GIGLSQIEAARGRLVHAVEMSGGKVSRYRILAPTEWNFHPEG---------AAARG 360 Query: 555 TKMAIPEQPLEILRTLHSF----DPCLACSTHV 583 ++ R F DPC+ V Sbjct: 361 LARIAQGDSHDVARIARLFVTAVDPCVGYEVRV 393 >UniRef50_P28153 Hydrogenase expression/formation protein hupK n=1 Tax=Rhizobium leguminosarum bv. viciae RepID=HUPK_RHILV Length = 370 Score = 76.8 bits (187), Expect = 2e-12, Method: Composition-based stats. Identities = 46/206 (22%), Positives = 71/206 (34%), Gaps = 39/206 (18%) Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 P + SD ++ + P G E G AR+ Sbjct: 191 RPDPLTISDDAEVVARLRDEAGYASLPHLSGRIAETGAYARS------------------ 232 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 ++ LP + L R A+ G ++ +L + G+ AS P Sbjct: 233 -ASAGLPEAP-------HLARRLRARI--GDVRISLTQLTALARTGDFDCASLACSGPTP 282 Query: 495 WPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 G G E RG L H I DG++ Y+ + PT WN P G + L+ Sbjct: 283 G---AGGYGAVECARGRLYHQIEIGGDGRLAAYRILAPTEWNFHP------AGPFVETLL 333 Query: 554 NTKMAIPEQPL-EILRTLHSFDPCLA 578 ++ + E + I R FDPC+A Sbjct: 334 SSPVGADEAAVRSISRLAVLFDPCVA 359 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 24/325 (7%) Query: 12 INNAGRRLVVDPITR--IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 + + +RL PI R + + + + ++ R +E +G A Sbjct: 157 VGDDIQRLPFGPI-RADVVESAQFVFHYIGEGILHYHPRLFYKHRAMEARFEGVPISAAC 215 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 ER+ GV + H LA A+E A+G + P A R ++ ++HL F LA Sbjct: 216 VLAERVSGVDSVAHVLAFSQAMEAALGWQAPLRAQAWRVVLAELERLYNHLQFFGHLAKT 275 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 + V +A + ++ Q S V L++ ++ L N Sbjct: 276 TTLKVAEAEGIWLEE--QVKQINGRLTGSRFLRGVIVPGGLRRDLDATALIADLNALQPQ 333 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG---------------KNPHPNWIV 234 + L AN YL+ L + + A G + H + Sbjct: 334 IEDYLDTLAN---TRSYLDRLLTTGVLPRQVAFDQGATGPIERASDLDRDLRRDHGYALY 390 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGT 294 + A+ G A R ++ + N + P + + G Sbjct: 391 PELQFAVPTATEGDADARARVRDQEIRQSLHLIRQ-ALNKLEPGPICRTESTIDPPMEGM 449 Query: 295 GLSDKCVLSYGAFPDIANDFGEKSL 319 GL + G + D + L Sbjct: 450 GLGWAEAVRGGLIYAVHWDAKTERL 474 >UniRef50_Q83WU9 HupK n=1 Tax=Thiocapsa roseopersicina RepID=Q83WU9_THIRO Length = 389 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 58/182 (31%), Gaps = 38/182 (20%) Query: 397 WIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRA 456 ++ P W+G E P R L L + L R+ + Sbjct: 237 FVAHPTWQGQPRETSPFTRV-------------------HPLPLIEAYGPGLLVRLSAQL 277 Query: 457 HEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWA 516 L A + +P G+G A RG L H Sbjct: 278 TVVATGLRLLSRC--------------CAGSASAQPTLASGNGVGLGRVFAARGLLAHLV 323 Query: 517 AIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + DG++ Y+ + PT WN PR G + AL + E+L + + DPC Sbjct: 324 RVEDGRVRDYRILAPTEWNFHPR---GVVARALEALPPGPEEQVRRQAELL--ITAIDPC 378 Query: 577 LA 578 +A Sbjct: 379 VA 380 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 76.4 bits (186), Expect = 3e-12, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 +++P GH R ++ + +I + RGLE + + + F ERI G Sbjct: 183 IIEP-----GHFR--FSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDE 235 Query: 80 TGVHALASVYAIEDAIGIK-VPDNANIIRNIMLATLWCHDHL 120 T ++LA AIE GI +P+ A R + HL Sbjct: 236 TFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHL 277 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 76.0 bits (185), Expect = 4e-12, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 3/118 (2%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R + + V+ + G RG+E +L + E I G + H L Sbjct: 163 IEPGHFRFQCA--GEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIAGDTSIGHGL 220 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPR 143 + AIE GI V A IIR L +H+ LAG + A R Sbjct: 221 SMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPPAAYFGRIR 278 >UniRef50_D2LH96 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LH96_RHOVA Length = 504 Score = 75.6 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 18 RLVVDPI--TRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 ++ V P+ IE GH R N + V G + +G+E + QG A R Sbjct: 150 QIPVGPVHAGIIEPGHFR--FTANGETVARLEARLGYVHKGVEALAQGASIEKAAKLAAR 207 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 + G T ++ A A+E A+G ++P A I+R +M H+ Sbjct: 208 MSGDSTVAYSFAFSRAVEAALGWEIPPRAQILRGVMAELERLSHHV 253 >UniRef50_Q20XQ1 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XQ1_RHOPB Length = 368 Score = 75.6 bits (184), Expect = 6e-12, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 61/206 (29%), Gaps = 44/206 (21%) Query: 381 GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNL 440 D + + + ++ AP G E GP AR + + + Sbjct: 181 NDDEQVLAALDDQEETFAAAPWLPGRRPETGPAARAALRGLRPASPA------------- 227 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR 500 R+ R E AA + A +W Sbjct: 228 ---------ERLCARLAEVAEAADLIA-------------GTQRADGSEWLSTASLGPGV 265 Query: 501 GVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G E PRG L H + G + Y + PT WN + G + AAL + Sbjct: 266 GFCAVETPRGRLHHLVRLAPQGTVQRYLILAPTEWNFAA------DGPFAAALDKFPVGE 319 Query: 560 PEQPLE--ILRTLHSFDPCLACSTHV 583 + I R +DPC+ C+ V Sbjct: 320 DGDAAKSAIARLASLYDPCVGCAIEV 345 Score = 45.6 bits (106), Expect = 0.005, Method: Composition-based stats. Identities = 26/139 (18%), Positives = 42/139 (30%), Gaps = 8/139 (5%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G +R ++ D V+ RGL + P R+ +C H LA++ Sbjct: 8 GCVRITADVADARVV-ARSVLSDRPRGLAAAIARHRPVAIPDLTRRLFALCGTSHWLAAI 66 Query: 89 YAIEDA-IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A+ A ++ P +R MLA HL + DW + + S Sbjct: 67 NALAMAGAAMEAPSPDTAVR--MLAAERVVAHLQATFI----DWGSTVRPTPIEAAALSS 120 Query: 148 LAQSLSSWPKSSPGYFFDV 166 V Sbjct: 121 ALTLAKGSHIDGEALLGAV 139 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 32/138 (23%), Positives = 51/138 (36%), Gaps = 13/138 (9%) Query: 1 MSTQYETQGYTINNAGRRL--VVDPITRI-------EGHMRCEVNINDQNVITNAVSCGT 51 ++TQY+ +I + D + I G + V + + + G Sbjct: 176 VTTQYDRPDGSITTKENTIFTEDDYVVNIGPQHPSTHGVLHFRVALEGERIRKIDPILGY 235 Query: 52 MFRGLEIILQGRDPRDAWAFVERI--CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNI 109 + RG+E + + A ER+ G HAL IE A GI+V + IR I Sbjct: 236 IHRGIEKLNESLTYPQTLALTERLDYLGAMQNRHAL--CMCIEKAAGIEVSERVQYIRTI 293 Query: 110 MLATLWCHDHLVHFYQLA 127 M H++ F L Sbjct: 294 MDEFQRIDSHILFFSCLC 311 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 75.2 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 41/101 (40%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V G + RG E + + + +R+ +C + LA Sbjct: 32 HGVLRLVLELDGEFVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRLDYLCPPSNNLAF 91 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 A+E +GI+ P A IR +M HL+ L Sbjct: 92 ALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPM 132 >UniRef50_C0VXU6 Reducing hydrogenase alpha subunit n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU6_9CORY Length = 370 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 87/292 (29%), Gaps = 69/292 (23%) Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 S+ +PGG ++ P+ + +++E ++ + + VG + + NP Sbjct: 133 PSVAVPGGVTQAATEWDLEPLHRL-VGKLKEVLNTSPAHVSSGYVGTNVALVSRNGELNP 191 Query: 377 GDVKGSDTNIQQLNEQERYSWIK------------APRWRGNAMEVGPLARTLIAYHKGD 424 + W P G + VGP AR + GD Sbjct: 192 LGDIVGVIRDGSFSSFPVTDWTARVVESCPGSVSPFPLLDGQSYRVGPRARAAFSSVDGD 251 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 + ++A A +L +L+ Sbjct: 252 ---------------------------TIAELYDAAVAMVELAAKPSLYGDDLRA----- 279 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKG 543 + + P G G ++PRG L H I +G + Q + PT N DP Sbjct: 280 ------DVSETPVSQTGTGIVDSPRGILVHHYEIDENGILTGAQILTPTAQN----DPW- 328 Query: 544 QIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 + + E+ R + DPC+ C V G I V+ Sbjct: 329 ---------LTQMLTDAHTEEEMERAIRIADPCVPC---VSAPPGKMTIKVK 368 Score = 56.0 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 34 EVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIED 93 E + ++ T T R +E +L G+ V+ +CG+C H LA + A++ Sbjct: 15 EAVVVEEEDGTRHFDLSTFPR-VEHLLIGKPVDVVADSVKMLCGICPISHHLAGMRALDQ 73 Query: 94 AIGIK-VPDNANIIRNIMLATLWC 116 G +P+ A +R ++ Sbjct: 74 IYGATHLPETALDVRLLLHYASVL 97 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 38/91 (41%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYA 90 +R + ++ + V+ G + G E I + D +R+ + + +A A Sbjct: 33 LRLVLKLDGERVVDAVPDIGYLHSGFEKIGEHLDFNQYVTVTDRMNYISPMANNVAWHGA 92 Query: 91 IEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 +E +GI++ IR I+ DHL+ Sbjct: 93 VEKLMGIEITPRCKYIRTIICELARISDHLL 123 >UniRef50_Q07S92 Coenzyme F420-reducing hydrogenase alpha subunit-like protein n=6 Tax=Rhodopseudomonas palustris RepID=Q07S92_RHOP5 Length = 370 Score = 74.8 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 61/189 (32%), Gaps = 42/189 (22%) Query: 397 WIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRA 456 + P G E G LAR A + + + L R+L R Sbjct: 212 FASLPDLDGRLPETGALAR---------NADHPLIAALGNGLG----------ARLLARL 252 Query: 457 HEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGF--TEAPRGALGH 514 E + L+ +P + G+G E RG L H Sbjct: 253 IEIRATPALLRALLR-------------GEAMPIDPISSRQIAPGIGLAAVECARGRLHH 299 Query: 515 WAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE-QPLEILRTLHS 572 A+ G + + + PT WN PR G AL N + + + R + + Sbjct: 300 LVALDRQGLVSQFAILAPTEWNFHPR------GPLFRALQNLALRDDDADRARVARLVAA 353 Query: 573 FDPCLACST 581 FDPC+A S Sbjct: 354 FDPCVAFSV 362 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R V+++ + ++ G + G E ++ R + R+ + + H LA Sbjct: 41 HGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNMEHRTYTQCITYTPRMDYLHSFSHDLAY 100 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 ++E +G +VP A IR ++ HLV F +D+ + A + + Sbjct: 101 ALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLV-FLGTGLLDFGALTPFFYAFREREAV 159 Query: 148 L 148 L Sbjct: 160 L 160 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 43/94 (45%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G R + ++ + V+ G + RG+E + + R + +R+ + ++ L Sbjct: 25 HGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAEDRTYTQVIPYTDRLDYLAGMLNNLGY 84 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 V +E +G++VP+ A +R IM H+V Sbjct: 85 VQTVEKLLGLEVPERAEYLRVIMAELSRLASHMV 118 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 74.8 bits (182), Expect = 9e-12, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 2/118 (1%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + ++ G + R E I + R +R+ + Sbjct: 49 HGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDYFANMHNEHGY 108 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL--VHFYQLAGMDWIDVLDALKADPR 143 A+ED +G+++P A IR +M + HL + F L + +L A + R Sbjct: 109 CLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPILYAFRERER 166 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 71/201 (35%), Gaps = 20/201 (9%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA- 86 G +R + ++ + ++ G + R E + + + P + R+ +HALA Sbjct: 58 HGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMAEVKTPAQFMPNMGRV----DYLHALAW 113 Query: 87 ---SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF--YQLAGMDWIDVLDALKAD 141 V A+E GI++P+ A +R I HL+ + Y L + ++ A Sbjct: 114 NWAYVGAVEKLAGIEIPERAEYLRVITCELNRISSHLLWWGAYLLDLGAFTPIMYAFDDR 173 Query: 142 PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLM 201 L S S F V G + H + +LP M Sbjct: 174 EMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFVQG-----VRQFIPHLRSRLP-----M 223 Query: 202 GFAHYLEALDFQREIVKIHAV 222 A E + +R I ++ + Sbjct: 224 YTALVTENIILRRRIEEVGVI 244 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 44/101 (43%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G MR V++ + + +CG + RG+E + + A +R+ + + A Sbjct: 184 HGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNESLTYPQTLALTDRLDYLGAHQNRHAL 243 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 IE A+GI+V + IR IM HL+ + LA Sbjct: 244 CMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLLFYSCLAM 284 >UniRef50_Q3ZW31 Hydrogenase, group 4, HycE subunit n=3 Tax=Dehalococcoides RepID=Q3ZW31_DEHSC Length = 526 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%) Query: 27 IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHAL 85 IE GH R + + ++ V RGLE + G+D E I G + + Sbjct: 185 IEPGHFR--FSAIGEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGISGDESAANTY 242 Query: 86 ASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 A A+E + P A +R I+L + HL Sbjct: 243 AYSSAVEHICSSRPPRRAEQLRLILLEMERLYSHL 277 Score = 44.8 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 42/125 (33%), Gaps = 25/125 (20%) Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 + LP+ + R R E Q + G + KL ++ P Sbjct: 408 SFKLPVLPEGDVMARFRVRLSEVQTSLGLILKTAAKLSAG------------EYAIPLKP 455 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPT--TWNASPRDPKGQIGAYEAALMN 554 + E+PRG HW +RDGKI+ Y+ + W A E A++ Sbjct: 456 VNGYSLVLVESPRGQSLHWLWLRDGKIERYKVRTASYCNW-----------QAIEHAVLG 504 Query: 555 TKMAI 559 + Sbjct: 505 DIIPD 509 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 6/106 (5%) Query: 23 PITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGV 82 P+T GH R + I+ + + G RG+E +L+ R +ER T Sbjct: 15 PVT---GHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPMIERFNMTDTAP 71 Query: 83 HALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +L+ A+E + + P A +R I+ HL Y LA Sbjct: 72 MSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHL---YNLAL 114 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 42/92 (45%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 GHMR V + +++ G + R +E + +GR+ A +ER+ + + + V Sbjct: 35 GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTIIDSHNATVGLV 94 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 A+E + ++ P A +R ++ HL Sbjct: 95 TAMERLLDVEPPPRALYLRTLLSEINRIASHL 126 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 74.5 bits (181), Expect = 1e-11, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 2/93 (2%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH-ALAS 87 GHMR V +N + + G + R +E + + R+ VER + +H L Sbjct: 40 GHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERP-AILDSIHMNLGY 98 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 + A+E +G+ VP+ A +R+ HL Sbjct: 99 IIAVEKILGVDVPERAQYLRSFAAEVNRIASHL 131 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 42/94 (44%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 +++ + V + G + RG+E + + + + + +R+ + A V A E Sbjct: 221 FDLDGEYVKQCDIIIGQLHRGVEKLGENVNWQQFIPYTDRMDYIAAINENHAYVLAAEKM 280 Query: 95 IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +GI+VP+ A IR +M + HL+ A Sbjct: 281 LGIEVPEKAKWIRTMMAELSRINSHLLWLGTYAL 314 >UniRef50_Q6NIT9 Putative reducing hydrogenase alpha subunit n=1 Tax=Corynebacterium diphtheriae RepID=Q6NIT9_CORDI Length = 347 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 59 ILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 +L GR+ + V+R+CG+C H LA V A++ G++VP++A ++R ++ + Sbjct: 38 MLVGRNVAEVPDIVKRLCGLCPVAHHLAGVRALDALCGVEVPESAQLVRLLLHHGSILY 96 Score = 59.0 bits (141), Expect = 5e-07, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 8/93 (8%) Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 ++ + GVG E PRG L H DG + Q + PT N Sbjct: 247 EFRKESSILSGIGVGAVEGPRGLLVHRYVANEDGVLVDCQILTPTAQN-----EAWLASM 301 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 EA+L E +E ++ + +PCL CS Sbjct: 302 LEASLQQDSDRGVELSVE--NSIRTANPCLPCS 332 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 73.7 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 42/96 (43%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R +++ + ++ G + RG+E + + + +R+ + + + Sbjct: 35 HGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAENMIYNEFMPTTDRMDYIASSANNYGF 94 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 A+E IG++VP A +IR ++L HL Sbjct: 95 ALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWL 130 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 73.3 bits (178), Expect = 2e-11, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 3/101 (2%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 GHMR V ++ + G + RG+E + + R VE+ + + L Sbjct: 43 GHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENRPYWTLIPLVEKASIMDSMNITLPIT 102 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 A+E A+G++ P A +R M H Y LA + Sbjct: 103 LALEKALGLEPPPRAKYLRTAMAELSRI---RTHLYDLALL 140 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 73.3 bits (178), Expect = 3e-11, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 1/103 (0%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + + + + G + RG+E I + + + +R V + L Sbjct: 38 HGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKRYAQFTPWTDRTDYVAAPSNNLGY 97 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 V A+E +GI+ P+ A R IM HLV +D Sbjct: 98 VLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGT-HALD 139 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 72.9 bits (177), Expect = 3e-11, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 39/95 (41%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G R V I+ + + G + RG E + + + +R+ V + Sbjct: 35 HGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAENLTYTQIIPYTDRMDYVSAMTNNYVL 94 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 +A+E +G+++P+ A +R I + HLV Sbjct: 95 CHAVETMMGLEIPERAQFLRLIAMELNRVASHLVW 129 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 72.9 bits (177), Expect = 4e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 37/101 (36%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R ++ + + + G + RG E I + + +R+ + + +A Sbjct: 54 HGVLRIQMELEGEILTKADPIIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNMAY 113 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 V A+E G+ VP IR I HL+ Sbjct: 114 VIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFGL 154 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R ++ + + V++ G + G+E + R + V+R+ + A Sbjct: 31 HGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVFTLVDRLDYLSGPAEEQAF 90 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 A+E + I+VP+ A IR I+L HL+ Sbjct: 91 AGALERLMNIEVPERAQTIRIILLELSRIASHLLW 125 >UniRef50_Q2BN45 Putative hydrogenase expression/formation protein hupK n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN45_9GAMM Length = 380 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 50/150 (33%), Gaps = 16/150 (10%) Query: 446 QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR----- 500 S R R + + + + + ++ E Sbjct: 235 SSVWTRNRSRQVIQEAELLAMHPVAQRFLALVLELQEIPQRIARFGKEQLGKEALVFSDL 294 Query: 501 -GVGFTEAPRGALGHWAAIRDG----KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G+ +A RG L H I + +I YQ + PT WN P GA + L Sbjct: 295 PGMSHVDAARGRLTHRVKITEQHGEARISEYQVIAPTEWNFHPE------GALKQMLKGV 348 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 K+++ + R + + DPC+A V+ Sbjct: 349 KVSLVQARELTERLVLAIDPCVAYKVEVVE 378 Score = 52.5 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 1/88 (1%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 + G + ++ + + + + +G+ + G+ P+DA + I +C+ +A Sbjct: 7 LSGRINISLSYDSEMITDLTIESSR-PKGIAQLFVGQKPQDAVDRIPLIYSLCSVAQTIA 65 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATL 114 + AIE +G K + A I R ++L Sbjct: 66 GLSAIESELGCKASEEAIIARKVLLLAE 93 >UniRef50_C6P4F4 Putative hydrogenase expression/formation protein HupK n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P4F4_9PROT Length = 360 Score = 72.5 bits (176), Expect = 4e-11, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 42/186 (22%) Query: 394 RYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRIL 453 + P W G A E G A YH + + + S L R+L Sbjct: 208 DADFSARPDWMGKAAETGAWA-----YHADNPMLRDVWQQSGSK----------PLTRLL 252 Query: 454 CRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALG 513 R + +A+ + A P +G+ RG L Sbjct: 253 ARMLDVV--------------------EMASGNALPRLDAASPATGQGIAVVRTARGLLM 292 Query: 514 HWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLH-S 572 H + ++ Y+ V PT WN P GA+ + + + S Sbjct: 293 HHVHVAAERVTEYEIVAPTEWNFHP------AGAFAQDMRGMMEQDRGRLQRSAQIAALS 346 Query: 573 FDPCLA 578 DPC+A Sbjct: 347 LDPCVA 352 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria Rep... 708 0.0 UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 ... 638 0.0 UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root R... 607 e-172 UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepI... 572 e-161 UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquifica... 564 e-159 UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 T... 544 e-153 UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root R... 542 e-152 UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria Rep... 541 e-152 UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 T... 537 e-151 UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 ... 535 e-150 UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=1... 524 e-147 UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=2... 524 e-147 UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n... 522 e-146 UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 T... 521 e-146 UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root Rep... 518 e-145 UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium g... 515 e-144 UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 T... 501 e-140 UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 ... 483 e-135 UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 T... 477 e-133 UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax... 467 e-130 UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), l... 452 e-125 UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, i... 450 e-125 UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 ... 438 e-121 UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n... 428 e-118 UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 ... 418 e-115 UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 ... 409 e-112 UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Ta... 400 e-110 UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium R... 399 e-109 UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostrid... 378 e-103 UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 ... 377 e-103 UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clost... 370 e-101 UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large sub... 370 e-100 UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 ... 366 1e-99 UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax... 365 3e-99 UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 T... 365 4e-99 UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Arch... 361 4e-98 UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n... 358 5e-97 UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 T... 356 1e-96 UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment... 353 8e-96 UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 T... 351 4e-95 UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 ... 348 3e-94 UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 T... 348 3e-94 UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 T... 348 5e-94 UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 ... 345 3e-93 UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitr... 344 5e-93 UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 T... 342 2e-92 UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 ... 342 3e-92 UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 ... 341 4e-92 UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 T... 341 4e-92 UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO 341 6e-92 UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 ... 332 2e-89 UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteob... 329 2e-88 UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteo... 329 2e-88 UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hy... 322 3e-86 UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), l... 316 1e-84 UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 T... 313 2e-83 UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenotherm... 303 1e-80 UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria... 300 1e-79 UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl v... 297 1e-78 UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 ... 295 4e-78 UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH 295 4e-78 UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 T... 291 4e-77 UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subun... 288 4e-76 UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10... 287 6e-76 UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=... 286 1e-75 UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogen... 284 8e-75 UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl v... 283 1e-74 UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 T... 276 2e-72 UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragme... 276 2e-72 UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 T... 272 3e-71 UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alph... 272 4e-71 UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 T... 270 1e-70 UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=... 268 4e-70 UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 ... 268 5e-70 UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=... 264 7e-69 UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 T... 264 8e-69 UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 T... 263 1e-68 UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22... 262 3e-68 UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga... 262 3e-68 UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 T... 257 8e-67 UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenoc... 256 2e-66 UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax... 253 2e-65 UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolic... 244 8e-63 UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 ... 234 8e-60 UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n... 226 2e-57 UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 T... 225 2e-57 UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmo... 224 9e-57 UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Su... 220 9e-56 UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alp... 217 1e-54 UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 ... 210 1e-52 UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Ni... 207 1e-51 UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 ... 203 1e-50 UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Sal... 202 4e-50 UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 ... 199 3e-49 UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hyd... 198 6e-49 UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 T... 184 8e-45 UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 ... 183 2e-44 UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8... 182 3e-44 UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 T... 182 4e-44 UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus on... 178 4e-43 UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 177 9e-43 UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus ... 175 6e-42 UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus s... 164 7e-39 UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L ... 163 1e-38 UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subuni... 163 1e-38 UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 T... 160 1e-37 UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen l... 160 1e-37 UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Entero... 160 1e-37 UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Ta... 160 2e-37 UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax... 160 2e-37 UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 ... 159 3e-37 UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 ... 158 4e-37 UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10... 158 4e-37 UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subu... 158 6e-37 UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit... 156 2e-36 UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 ... 156 2e-36 UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 ... 155 4e-36 UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfov... 155 6e-36 UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=... 155 7e-36 UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM... 153 1e-35 UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepI... 153 1e-35 UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 153 2e-35 UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 ... 153 2e-35 UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria Rep... 152 3e-35 UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4... 152 3e-35 UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=... 152 4e-35 UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha... 151 5e-35 UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacter... 151 6e-35 UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 148 4e-34 UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospir... 148 7e-34 UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 148 8e-34 UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococ... 148 8e-34 UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 T... 148 8e-34 UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/P... 147 1e-33 UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Ba... 146 2e-33 UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID... 146 3e-33 UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 ... 146 3e-33 UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L ... 146 3e-33 UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=... 145 5e-33 UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfit... 143 2e-32 UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Ru... 143 3e-32 UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH deh... 143 3e-32 UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase lar... 142 4e-32 UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=... 141 5e-32 UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=... 141 6e-32 UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=... 141 6e-32 UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=... 141 7e-32 UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 ... 141 8e-32 UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 T... 141 9e-32 UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteo... 141 1e-31 UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax... 140 1e-31 UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax... 140 1e-31 UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=... 140 1e-31 UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular orga... 140 2e-31 UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 139 2e-31 UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subun... 139 2e-31 UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 ... 139 4e-31 UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 138 5e-31 UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subuni... 138 5e-31 UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerob... 138 6e-31 UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=... 138 7e-31 UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular orga... 138 7e-31 UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Baci... 138 7e-31 UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=... 137 9e-31 UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=... 137 1e-30 UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax... 136 2e-30 UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n... 136 2e-30 UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 T... 136 2e-30 UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, ... 136 2e-30 UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Syne... 136 2e-30 UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 T... 135 3e-30 UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomirag... 135 4e-30 UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacter... 135 4e-30 UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 ... 135 6e-30 UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase... 135 7e-30 UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomi... 133 2e-29 UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus... 133 2e-29 UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=... 133 3e-29 UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Ep... 132 4e-29 UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bac... 132 4e-29 UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarch... 132 4e-29 UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 ... 131 5e-29 UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 131 8e-29 UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-li... 131 9e-29 UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax... 131 1e-28 UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea R... 130 2e-28 UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota... 130 2e-28 UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=... 130 2e-28 UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 128 5e-28 UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax... 128 5e-28 UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subuni... 128 5e-28 UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolo... 128 6e-28 UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=c... 128 8e-28 UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 127 1e-27 UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 127 1e-27 UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomyce... 127 1e-27 UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=A... 127 1e-27 UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 ... 127 1e-27 UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Ta... 127 2e-27 UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus ... 126 2e-27 UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=F... 126 2e-27 UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax... 125 5e-27 UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meth... 125 6e-27 UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasm... 125 7e-27 UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Pa... 125 7e-27 UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoprote... 124 9e-27 UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=E... 124 1e-26 UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus... 124 1e-26 UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N... 123 1e-26 UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Ar... 123 1e-26 UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=... 123 2e-26 UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanoc... 123 2e-26 UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=... 123 2e-26 UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit ... 122 4e-26 UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax... 122 4e-26 UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa sub... 122 4e-26 UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 ... 121 7e-26 UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 ... 121 7e-26 UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur prot... 121 8e-26 UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=... 121 9e-26 UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=C... 120 1e-25 UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogac... 120 1e-25 UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=... 120 1e-25 UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 ... 120 1e-25 UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonpr... 120 2e-25 UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=... 120 2e-25 UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D... 120 2e-25 UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria... 119 3e-25 UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 T... 119 3e-25 UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Ta... 119 3e-25 UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meio... 118 5e-25 UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 4... 118 5e-25 UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=B... 118 5e-25 UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST 118 6e-25 UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 T... 118 7e-25 UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Ta... 118 7e-25 UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnet... 118 9e-25 UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=... 117 1e-24 UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Aci... 117 1e-24 UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH 117 1e-24 UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter... 117 1e-24 UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=c... 117 1e-24 UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella p... 117 1e-24 UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=B... 117 2e-24 UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n... 116 2e-24 UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydr... 116 2e-24 UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemm... 116 2e-24 UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopi... 116 2e-24 UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea ... 116 2e-24 UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsul... 116 3e-24 Sequences not found previously or not previously below threshold: >UniRef50_P0ACD8 Hydrogenase-1 large chain n=159 Tax=Bacteria RepID=MBHL_ECOLI Length = 597 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 597/597 (100%), Positives = 597/597 (100%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL Sbjct: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL Sbjct: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG Sbjct: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA Sbjct: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC Sbjct: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ Sbjct: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ 360 Query: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY Sbjct: 361 VGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG Sbjct: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD Sbjct: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRD 540 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR Sbjct: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 >UniRef50_B8IZ17 Nickel-dependent hydrogenase large subunit n=17 Tax=Bacteria RepID=B8IZ17_DESDA Length = 604 Score = 638 bits (1644), Expect = 0.0, Method: Composition-based stats. Identities = 386/600 (64%), Positives = 476/600 (79%), Gaps = 4/600 (0%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS +Y+TQGYT+ +AGRRLVVDP+TRIEGH+RCEVNIND NVITNAVSCGT+FRG+EIIL Sbjct: 1 MSYEYKTQGYTVVDAGRRLVVDPVTRIEGHLRCEVNINDDNVITNAVSCGTIFRGIEIIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +GRDPRDAWAF ERICGVCTG HALASV+A+E+A+GI +PDNANIIRN+M L HDHL Sbjct: 61 KGRDPRDAWAFTERICGVCTGTHALASVHAVENALGIDIPDNANIIRNLMQLCLMYHDHL 120 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 VH Y L G+DW+DV+ A KADP+ TSELAQ LS WP SSPGYF V+++L K + QLG Sbjct: 121 VHLYHLTGLDWVDVVSASKADPKATSELAQKLSPWPNSSPGYFKSVKDKLLKLINSNQLG 180 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 IF NGYWGHP YKL PEANLM AHY+EALDFQ+++V IH +FGGKNPHPNW+VGG+PC+ Sbjct: 181 IFTNGYWGHPAYKLSPEANLMVVAHYIEALDFQKDVVHIHTIFGGKNPHPNWLVGGVPCS 240 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC 300 +NID GA +N ERL+ V +I R F V+IPD LA+ F W IG GLS Sbjct: 241 LNIDGVGAADVINQERLDFVLQVIERCRTFAQQVVIPDTLALAGFYGDWLNIGGGLSKLS 300 Query: 301 VLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR-YPND 359 VL+YG PDIAND+ E SLLMP GA+ING+FN VLPV L +P+++QE V+H+WY+ YP Sbjct: 301 VLAYGGIPDIANDYTENSLLMPPGAIINGNFNEVLPVSLTNPEEIQETVNHSWYKPYPAG 360 Query: 360 QVGRHPFDGITDPWYNPGD-VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 + G HP++GIT+P YNPG +KG+ T+++Q++E++RYSW+K P WRG+ MEVGPLAR LI Sbjct: 361 KTGLHPWEGITEPHYNPGPNIKGTPTDLKQVDERDRYSWLKTPLWRGHQMEVGPLARMLI 420 Query: 419 AYHKGDAATVESVDRM-MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNL 477 Y + + VD A +P++ +QSTLGRI R+ E WAA K++YF+D+L+TNL Sbjct: 421 GYARKNDDIKGLVDDFLGRAGGVPVTVLQSTLGRIAARSLELAWAAEKMRYFYDRLITNL 480 Query: 478 KNGNLATASTEKWEPATWP-TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNA 536 KNG ATA+T KW+P +WP E RGVGFTEAPRGALGHW IRD KI+ YQCVVPTTWN Sbjct: 481 KNGVRATANTTKWKPESWPTGELRGVGFTEAPRGALGHWVKIRDRKIESYQCVVPTTWNG 540 Query: 537 SPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +PR P GQ+ AYEA+LMNT+MAIPEQPLEILRTLHSFDPCLACSTH++G DG +L++V++ Sbjct: 541 APRSPDGQLSAYEASLMNTRMAIPEQPLEILRTLHSFDPCLACSTHIIGPDGKDLLTVRM 600 >UniRef50_P31891 Uptake hydrogenase large subunit n=45 Tax=root RepID=MBHL_RALEH Length = 618 Score = 607 bits (1564), Expect = e-172, Method: Composition-based stats. Identities = 352/619 (56%), Positives = 452/619 (73%), Gaps = 26/619 (4%) Query: 3 TQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG 62 + Y TQG+ +++ GRR+VVDP+TRIEGHMRCEVN++ NVI NAVS GTM+RGLE+IL+G Sbjct: 2 SAYATQGFNLDDRGRRIVVDPVTRIEGHMRCEVNVDANNVIRNAVSTGTMWRGLEVILKG 61 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 RDPRDAWAFVERICGVCTG HALASV A+E+A+ I++P NA++IR IM TL HDH VH Sbjct: 62 RDPRDAWAFVERICGVCTGCHALASVRAVENALDIRIPKNAHLIREIMAKTLQVHDHAVH 121 Query: 123 FYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRLKKFVEGGQLGI 181 FY L +DW+DV+ ALKADP++TSEL Q +S P SS GYF D+QNRLK+FVE GQLG Sbjct: 122 FYHLHALDWVDVMSALKADPKRTSELQQLVSPAHPLSSAGYFRDIQNRLKRFVESGQLGP 181 Query: 182 FRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAI 241 F NGYWG Y LPPEANLM HYLEALD Q+E VKIH +FGGKNPHPN++VGG+PCAI Sbjct: 182 FMNGYWGSKAYVLPPEANLMAVTHYLEALDLQKEWVKIHTIFGGKNPHPNYLVGGVPCAI 241 Query: 242 NIDESGAVGAV-NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI-GTGLSDK 299 N+D GA A NMERL+ V++ I +F NV +PD LAIG K + G GL+ Sbjct: 242 NLDGIGAASAPVNMERLSFVKARIDEIIEFNKNVYVPDVLAIGTLYKQAGWLYGGGLAAT 301 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND 359 VL YG +P++A + + + +PGGA++NG+++ V PVD D QQVQEFV H+WY+Y ++ Sbjct: 302 NVLDYGEYPNVA--YNKSTDQLPGGAILNGNWDEVFPVDPRDSQQVQEFVSHSWYKYADE 359 Query: 360 QVGRHPFDGITDPWYN-PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 VG HP+DG+T+P Y + KG+ T I+Q++E +YSWIK+PRWRG+AMEVGPL+R ++ Sbjct: 360 SVGLHPWDGVTEPNYVLGANTKGTRTRIEQIDESAKYSWIKSPRWRGHAMEVGPLSRYIL 419 Query: 419 AYHK---GDAATVESVDRM-----------MSALNLPLSG------IQSTLGRILCRAHE 458 AY G+ +++ AL LP + + ST+GR L RA E Sbjct: 420 AYAHARSGNKYAERPKEQLEYSAQMINSAIPKALGLPETQYTLKQLLPSTIGRTLARALE 479 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI 518 +Q+ + + L+ N++ G+ ATA+ +KW+PATWP + +GVG APRGALGHW I Sbjct: 480 SQYCGEMMHSDWHDLVANIRAGDTATANVDKWDPATWPLQAKGVGTVAAPRGALGHWIRI 539 Query: 519 RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 +DG+I+ YQCVVPTTWN SPRD KGQIGA+EA+LMNT M PEQP+EILRTLHSFDPCLA Sbjct: 540 KDGRIENYQCVVPTTWNGSPRDYKGQIGAFEASLMNTPMVNPEQPVEILRTLHSFDPCLA 599 Query: 579 CSTHVLGDDGSELISVQVR 597 CSTHV+ +G EL +V+VR Sbjct: 600 CSTHVMSAEGQELTTVKVR 618 >UniRef50_B4S322 Ni-Fe hydrogenase large chain n=20 Tax=root RepID=B4S322_ALTMD Length = 625 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 307/630 (48%), Positives = 399/630 (63%), Gaps = 61/630 (9%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 RLVVDPITRIEGH+R E ++ + A S GT RG+E+ILQGRDPRDAWAF +RIC Sbjct: 8 NRLVVDPITRIEGHLRIEAEMDGNTIKQ-AFSSGTSVRGIELILQGRDPRDAWAFAQRIC 66 Query: 77 GVCTGVHALASVYAIEDA----------IGIKV--------------------------- 99 GVCT VH +ASV A+EDA +G+ + Sbjct: 67 GVCTLVHGMASVRAVEDAIRKAWRSNAKLGVAIGKPSMTSMPKGPMQHGKKGHRQSRTSI 126 Query: 100 ----------PDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELA 149 P NA +IRNIM+AT + HDH++HFY L +DW+DV+ AL ADP +T+ LA Sbjct: 127 GVLSEAEMAIPQNAQLIRNIMIATQYVHDHVMHFYHLHALDWVDVVSALDADPTRTATLA 186 Query: 150 QSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEA 209 LS +P+SSPGYF DV+ ++K VE GQLGIF N YWGHP YKLPPE NLM AHYL+A Sbjct: 187 GQLSDYPRSSPGYFKDVKQKVKTLVESGQLGIFSNAYWGHPGYKLPPEVNLMALAHYLDA 246 Query: 210 LDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTAD 269 L +QRE+VK+H +FGGKNPHPN++VGG+P IN+ A +N RL +Q IT+ Sbjct: 247 LTWQREVVKVHTIFGGKNPHPNFVVGGVPSPINL---NASTGINTSRLVQLQDAITQMKS 303 Query: 270 FINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVING 329 F++ V PD +AI + K W G GL + L+YG P + D + S L P GA++ Sbjct: 304 FVDQVYYPDIVAIAGYYKEWGTRGEGLGN--FLTYGDLPMTSMDDPD-SFLFPRGAILGR 360 Query: 330 DFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV-GRHPFDGITDPWYNPGDVKGSDTNIQQ 388 D + V +DL DP ++QEFV +WYRY G HPF+G T Y G + Sbjct: 361 DLSKVHDLDLDDPSEIQEFVSSSWYRYSGGNASGLHPFNGQTTLEYT-----GPKPPYKH 415 Query: 389 LNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST 448 LN YSW+K+PRW+G+AMEVGPLAR L+ Y K DAA + V+R +S L+L S + ST Sbjct: 416 LNVGAEYSWLKSPRWKGHAMEVGPLARVLMMYAKKDAAAQDIVNRSLSILDLETSALFST 475 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 LGR L RA E + +LQ ++D+L+ N+ G+ T + ++P WP + +GVG EAP Sbjct: 476 LGRTLARAVETKIVVNQLQSWYDQLLDNIAKGDTDTFNPLYFDPTNWPIKGQGVGVMEAP 535 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK-MAIPEQPLEIL 567 RGALGHW +++GKI+ YQCVVPTTWNA PRDP Q GAYEAAL + + P+QPLEIL Sbjct: 536 RGALGHWLVMQNGKIENYQCVVPTTWNAGPRDPNSQAGAYEAALQDKHTLHDPDQPLEIL 595 Query: 568 RTLHSFDPCLACSTHVLGDDGSELISVQVR 597 RTLHSFDPCLAC+ HV+ + G E + ++VR Sbjct: 596 RTLHSFDPCLACAVHVMDETGEERLRLKVR 625 >UniRef50_A7BI82 Ni,Fe-hydrogenase large subunit n=3 Tax=Aquificaceae RepID=A7BI82_HYDTH Length = 565 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 282/578 (48%), Positives = 393/578 (67%), Gaps = 17/578 (2%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RLV+DP+TRIEGH+R E + + +A S GTM RG+EIIL+GRDPR+AWAF +RICG Sbjct: 3 RLVIDPVTRIEGHLRIEAELEGNR-VKSAYSSGTMVRGIEIILKGRDPREAWAFAQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VCT VHA AS+ A+EDA+ IKVP NA++IR +M+ TL+ HDH+VHFY L +DW++ + A Sbjct: 62 VCTTVHAFASIRAVEDALKIKVPRNASLIRKLMIGTLFVHDHVVHFYHLHALDWVNPIQA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 LKADP KTSELAQ LS + KSSP YF +VQ+++++ VE QLGIF GYW HP Y+LPPE Sbjct: 122 LKADPVKTSELAQKLSDYEKSSPSYFKEVQDKIRQQVERKQLGIFSRGYWDHPDYRLPPE 181 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANLM AHYL+AL++Q +IV++H +FGGKNPHPN++VGGM C I++ A+NM++L Sbjct: 182 ANLMAVAHYLDALNWQTKIVQVHTIFGGKNPHPNFVVGGMACPIDLQSD---TAINMDKL 238 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++S+I +F+ V +PD +AI F K W E G G+ + VL P+ + E Sbjct: 239 GRIKSLIDSMIEFVEKVYLPDLIAIASFYKDWFEKGEGVKNFLVL---GEPEG-DSHREG 294 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYP-NDQVGRHPFDGITDPWYNP 376 +P + + + N + VD +++E+V H++Y+Y D+ G HPF+G T Y Sbjct: 295 KFFIPPTFIRDRNLENY---EDVDYSKIEEYVTHSYYKYSVGDERGLHPFEGETVLHYT- 350 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G + QQLN + +YSW+KAPR+RG EVGPLAR L Y + + E V+ +S Sbjct: 351 ----GPEPPYQQLNVEGKYSWLKAPRYRGLPAEVGPLARILALYARDEHGARELVNSYLS 406 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 L LP++ + ST+GR L R E A ++ ++D+L+ N+K+G+ T + EKWEP+TW Sbjct: 407 KLGLPVNALYSTMGRTLARGIETYIYAHAIRSYYDQLVQNVKSGDSTTFNGEKWEPSTWE 466 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + +G+G EAPRG+L HW I+DGKI YQ VVPTTWN SPRD KGQ YEA+L+ + Sbjct: 467 KDAKGLGLMEAPRGSLSHWVHIKDGKIANYQAVVPTTWNGSPRDAKGQPSPYEASLVGHE 526 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 + P++PLEI+RT+HSFDPCLAC+ H+ D +I + Sbjct: 527 LVNPKEPLEIIRTIHSFDPCLACAVHLYSDTEDTIIKI 564 >UniRef50_C6E260 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=C6E260_GEOSM Length = 571 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 259/588 (44%), Positives = 369/588 (62%), Gaps = 21/588 (3%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 A R+V+DPITRIEGH+R E+ + NA +C T FRG+E IL+GRDPRDAWAF + Sbjct: 1 MATERIVIDPITRIEGHLRIELEAEGGRI-GNAWACATQFRGIEKILEGRDPRDAWAFAQ 59 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICGVCTGVHA+AS+ A+EDAI ++P++A +IRN++ DH++HFY L +DW+D Sbjct: 60 RICGVCTGVHAIASIRAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALDWVD 119 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 V+ AL ADP TS LA S+S WP +S +F +VQ R+ +GG LGIF +GYWGHP Y+ Sbjct: 120 VMSALAADPAATSRLAASVSPWPNNSVSWFKEVQQRVATSAKGG-LGIFASGYWGHPAYR 178 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPEANLM AHYLEAL +QRE++K+H +F GKNPHPN++VGGM +IN+D +N Sbjct: 179 LPPEANLMAVAHYLEALKWQREVIKLHTIFAGKNPHPNYLVGGMATSINLDNQ---LTIN 235 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 RL+ + I + F++ V PD +AI F ++ IG + AF Sbjct: 236 KVRLDQLGEQIRQARRFVDEVYYPDVMAIAGFYPEYASIGVSSPTLMAVGESAFSCSGTP 295 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ-VGRHPFDGITDP 372 G+ + G +++GD+ +P+ V E+V AWY YP G HP+ G T+P Sbjct: 296 AGKP---VAAGLLMDGDYRTP---HPFNPRMVAEYVSSAWYLYPEGDRQGLHPWQGRTEP 349 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 Y G +L++QE+Y+W KA R+ G ++VGP AR ++AY +G TV+ + Sbjct: 350 HYT-----GPKPPYSRLSDQEKYTWCKASRYDGRPVQVGPNARIMLAYAQGHPETVQLAN 404 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 R + L + + STLGR CRA E+ A +++ +F L +++G+++T + + WEP Sbjct: 405 RDLGILKAGVEALNSTLGRTYCRALESVILARRMEEWFAALNERIRSGDVSTFNADLWEP 464 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 +WP + +G+GF EA RG L HW I +G+I YQCVVP+TWN+S RD G +G YE AL Sbjct: 465 ESWPKQAQGMGFMEAARGTLSHWVEIDNGRISRYQCVVPSTWNSSGRDANGLMGPYEQAL 524 Query: 553 MN---TKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 + ++P+E+LRT+HSFDPCL+C+ H+L G V+VR Sbjct: 525 AGDKKHPLVDAKRPVEVLRTIHSFDPCLSCAVHMLIPGGPA-FEVKVR 571 >UniRef50_A6QAV3 Ni-Fe hydrogenase, large subunit n=83 Tax=root RepID=A6QAV3_SULNB Length = 624 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 254/595 (42%), Positives = 356/595 (59%), Gaps = 32/595 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + ++VDPITRIEGH+R E I++ N I +A S TMFRG+E IL+GRDPRD RIC Sbjct: 41 KHIIVDPITRIEGHLRIEAIIDENNKIVDAWSSSTMFRGIETILKGRDPRDCGLMAMRIC 100 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVCTG H S+ A+EDA I +P NA ++RN++ L+ HDHLVHFY L +D++DV+ Sbjct: 101 GVCTGTHYQRSIEAVEDAFKITIPKNARLVRNLIQGALYVHDHLVHFYHLHALDFVDVVS 160 Query: 137 ALKADPRKTSELAQSLSSWPKSSP-----GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 A KA+P T+ AQ + P F VQ+R+ KFV+ G+LGIF NGYWG+P Sbjct: 161 ATKANPTATAAEAQKWADVAGHKPSISGAADFKAVQDRIVKFVKEGRLGIFGNGYWGNPH 220 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVG 250 YKL PE NL+G AHYL+ALD QR++ K+ A+FGGKNPHP I VGG+ C +I Sbjct: 221 YKLTPEQNLIGVAHYLKALDIQRDMAKMQAIFGGKNPHPQSIVVGGVTCVQDIK------ 274 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKP-WSEIGTGLSDKC--------V 301 N R+ L + ++ + +FI +PD G ++ L Sbjct: 275 --NPARIALFKQLLQESNEFIKGAYLPDIYMAGTMYADEATDKDATLKGVGGTGGGILSY 332 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV 361 +SYG F F +L P G V++GD + L V DP ++ E V H+WY Sbjct: 333 MSYGDFRLDDTGFYNSEMLFPSGLVLDGDISKALDV---DPNKITEDVTHSWYEGTG--A 387 Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYH 421 HP++G T P Y + K + + E+YSWIK+P + G +EVGPLAR +I Y Sbjct: 388 PEHPYEGTTIPKYTGLEKKADGYSYLKTE--EKYSWIKSPLYDGKKVEVGPLARMVIGYV 445 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 KGD + V + NLP++ + ST+GR RA E + + + D+L N +G+ Sbjct: 446 KGDKRITKYVGNFLKRANLPVTVLFSTVGRTAARAIETELMGDVMMEWVDELAKNAASGD 505 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 L+T + ++ + + +G+G EAPRG+LGHW +++GK++ YQ VVP+TWNA PR P Sbjct: 506 LSTWTEFDFDKVSV--DTKGMGLAEAPRGSLGHWVKVKNGKVENYQAVVPSTWNAGPRGP 563 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 KG+IGAYE +L+ TK+A PE+PLEI+RT+HSFDPC+AC+ HV+ G EL +V Sbjct: 564 KGEIGAYEGSLIGTKVANPEEPLEIIRTIHSFDPCIACAVHVVDTKGKELAVYKV 618 >UniRef50_P0ACE1 Hydrogenase-2 large chain n=154 Tax=Bacteria RepID=MBHM_ECO57 Length = 567 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 248/592 (41%), Positives = 354/592 (59%), Gaps = 38/592 (6%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+ +DP+TRIEGH+R + I V++ A + GTM+RG+E I++ RDPRDAW V+RI Sbjct: 2 SQRITIDPVTRIEGHLRIDCEIE-NGVVSKAWASGTMWRGMEEIVKNRDPRDAWMIVQRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT HAL+SV A E A+ I VP NA IRNI+LA HDH+VHFYQL+ +DW+D+ Sbjct: 61 CGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTHDHIVHFYQLSALDWVDIT 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 AL+ADP K SE+ + +S+W +SP F VQN++K V GQLGIF NGYWGHP KLP Sbjct: 121 SALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVASGQLGIFANGYWGHPAMKLP 180 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 PE NL+ AHYL+AL+ QR+ ++ A+ GGK PH + VGG+ IN+D G +N+ Sbjct: 181 PEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNLAVGGVANPINLDGLGV---LNL 237 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ERL ++S I + +DF+ V D I F W G G ++Y + P+ D Sbjct: 238 ERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRGKG-----AVNYLSVPEFPTDS 292 Query: 315 GEKSLLMPGGAVINGDFNNVLPV----DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGIT 370 S L PGG + N D ++ P+ D + +QE H+WY+ D+ + P++G T Sbjct: 293 KNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHSWYK---DEAPQAPWEGTT 349 Query: 371 DPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 P Y+ ++ +YSW+K+P + G +EVGPLA L+ G +T Sbjct: 350 IPAYDGW------------SDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRESTQNK 397 Query: 431 VDRM------MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 ++ + ++ L ++ + STLGRI+ R LQ + L+TN+ G+ T Sbjct: 398 LNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNIGKGDHTT 457 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 E +GVGF EAPRG L HW I+DG I YQ VVP+TWN+ PR+ Sbjct: 458 FVKPNIPAT---GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGPRNFNDD 514 Query: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++SV+V Sbjct: 515 VGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV 566 >UniRef50_B2UPR0 Nickel-dependent hydrogenase large subunit n=5 Tax=Bacteria RepID=B2UPR0_AKKM8 Length = 585 Score = 537 bits (1382), Expect = e-151, Method: Composition-based stats. Identities = 266/588 (45%), Positives = 373/588 (63%), Gaps = 20/588 (3%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 R+V+DP+TRIEGH+R E+ VI NA + T +RG+E+I RDPRD WAFVE Sbjct: 10 PESSRVVIDPVTRIEGHLRVEME-AGDGVIKNAWTSTTQYRGIEVIACKRDPRDVWAFVE 68 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICGVCTG HA+A++ A+EDA+ VP A ++R+++ L DH++HFYQL MDW+D Sbjct: 69 RICGVCTGTHAIAALAAVEDALQYPVPVQARLMRDLVSGALGIQDHVIHFYQLQAMDWVD 128 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 V+ ALKADP +T+ +A+SLS WP SS YF VQ +LK + GQ IF NGYWGHP YK Sbjct: 129 VMSALKADPAETAAIAKSLSDWPLSSAAYFAGVQKKLKDSIAYGQYSIFTNGYWGHPAYK 188 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LPPE NL+G AHYL+AL +QR+++KIH + GGKNPHPN++VGGM CAIN++ A+N Sbjct: 189 LPPEVNLLGVAHYLQALVWQRDMIKIHTILGGKNPHPNFLVGGMACAINMNND---QAIN 245 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 L+ ++ ++ DFI+ V PD +AI F K ++ IG S+ GA +I Sbjct: 246 QFSLSYLKQLVQTCHDFIHKVYYPDIVAIAGFYKDYAHIG--ASNPNFFCTGAPSEINTG 303 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND-QVGRHPFDGITDP 372 ++ G ++NGD+ NVLP D +++EFV +WYRY G P+DG T+ Sbjct: 304 APAGKGMIKPGVLLNGDYRNVLP---FDQDKIREFVTSSWYRYTEGRDAGLAPYDGETNA 360 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 YN G + L++ +Y+W+KAPR+ G+AM VGP AR +I Y +G A VE VD Sbjct: 361 DYN-----GPRPPYKWLSDHPQYTWVKAPRYDGHAMAVGPNARMMIGYAQGVPAIVERVD 415 Query: 433 RMMSALNLPLSG--IQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 L LP + STLGR+ RA +A + ++ ++NG +T + EKW Sbjct: 416 AACDKLGLPRDNAFMNSTLGRVYGRALDALINVDMMVDQLQEMTDRIRNGETSTFNPEKW 475 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 EP TWP+ C+GVG+ EAPRG+L HW I +G+ YQ VVP+TWN+S RD GQ+G YE Sbjct: 476 EPETWPSSCKGVGWVEAPRGSLSHWVRIENGQTVNYQAVVPSTWNSSGRDAAGQMGPYEY 535 Query: 551 ALMNT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 +L +T + P +P+E LRT+HS+DPC +C+ H+ ++G +++ Q Sbjct: 536 SLAHTGKHPLVDPSRPVEPLRTIHSYDPCQSCAVHLFDEEGEAILTRQ 583 >UniRef50_B4U675 Nickel-dependent hydrogenase large subunit n=24 Tax=Bacteria RepID=B4U675_HYDS0 Length = 633 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 296/629 (47%), Positives = 400/629 (63%), Gaps = 51/629 (8%) Query: 16 GRRLVVDPITRIEGHMRCEVNIND-QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 R+V+DP++RIEGH+R E+ +++ + +TNAVS GTM+RG+E+I++ RDPR+ WAF +R Sbjct: 2 SSRVVIDPVSRIEGHLRLEIEVDEPSHKVTNAVSAGTMWRGIELIVKNRDPREVWAFTQR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGVCT +HALASV IEDA+ I++P NAN IRNIML TL+ HDHLVHFY L +DW+ Sbjct: 62 ICGVCTTIHALASVRNIEDALDIEIPKNANYIRNIMLGTLYAHDHLVHFYHLHALDWVSP 121 Query: 135 LDALKADPRKTSELAQSL---------------------SSWPKSSPGYFFDVQNRLKKF 173 L+A+KADP T+ L + +PK++PGYF Q+++K Sbjct: 122 LEAVKADPVATAALQNQILQTYGGIISLYTDFLGGNAYPRKFPKATPGYFKTFQDKIKNL 181 Query: 174 VEGGQLGIFRNGYWGHPQYK-LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW 232 V+ GQLGIF +W HP YK LPPE +L+ +HYL LD QRE+V H VFGGKNPHP++ Sbjct: 182 VQSGQLGIFAANWWDHPDYKMLPPEVHLIAVSHYLNMLDVQRELVIPHVVFGGKNPHPHY 241 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFN-KPWSE 291 IVGGM C+I++D+ A +NMERL +V+ + A+ N + D LAIGQ + Sbjct: 242 IVGGMNCSISMDDMNA--PINMERLAVVEDAVYTQAEAANLFYLIDLLAIGQIYVQKGWT 299 Query: 292 IGTGLSDKCVLSYGAFPDIA------NDFGEKSLLMPGGAVIN-------GDFNNVLPVD 338 G GLS + VL YG +PD D+ +K L G V N + + D Sbjct: 300 YGGGLSKERVLGYGDYPDEPYKSIKNGDYHQKILYHSDGVVENFAQGVDKAKYYPLTNKD 359 Query: 339 LVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWI 398 L +P +QE+V H+WY+YPN+ G HP++GITDP+Y +G+ T+ + L+E +YSWI Sbjct: 360 LTNPDIIQEWVTHSWYQYPNNNEGLHPWNGITDPYYTG-PKEGTKTHWKYLDENGKYSWI 418 Query: 399 KAPRWRGNAMEVGPLARTLIAYHK----------GDAATVESVDRMMSALNLPLSGI-QS 447 K PRW+ EVGPLAR +I Y D V +D + LNLP + Sbjct: 419 KEPRWKNLPAEVGPLARYMIVYTAVKQGHIKPSWMDEMVVNQIDLVSKLLNLPPHVWMPT 478 Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 T+GR RA E Q A YF KL N+K G+ + A+ EKWEP+TWP++ +GVG TEA Sbjct: 479 TVGRTAARALECQLGANASNYFLKKLYDNIKAGDTSVANMEKWEPSTWPSQAKGVGITEA 538 Query: 508 PRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 PRGALGHW I+DGKI+ YQ VVPTTWN SPRD KGQ GA+E ++ +T + I ++PLEIL Sbjct: 539 PRGALGHWCIIKDGKIENYQAVVPTTWNGSPRDEKGQQGAFERSMQDTIVLIAKEPLEIL 598 Query: 568 RTLHSFDPCLACSTHVLGDDGSELISVQV 596 R++HSFDPCLACSTHV E++S ++ Sbjct: 599 RSIHSFDPCLACSTHVYNTQKEEVVSFKI 627 >UniRef50_P21852 Periplasmic [NiFe] hydrogenase large subunit n=13 Tax=Bacteria RepID=PHNL_DESVM Length = 567 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 236/581 (40%), Positives = 326/581 (56%), Gaps = 42/581 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +VVDP+TRIEGH+R EV + + NA S T+FRGLEIIL+GRDPRDA F +R CGV Sbjct: 25 IVVDPVTRIEGHLRIEVEVE-NGKVKNAYSSSTLFRGLEIILKGRDPRDAQHFTQRTCGV 83 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 CT HALAS +++A+G+ +P NA IRN++L + HDH+VHFY L +D++DV AL Sbjct: 84 CTYTHALASTRCVDNAVGVHIPKNATYIRNLVLGAQYLHDHIVHFYHLHALDFVDVTAAL 143 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--GHPQYKLPP 196 KADP K +++A S+S K++ VQ++LK FVE GQLG F N Y+ GHP Y L P Sbjct: 144 KADPAKAAKVASSISPR-KTTAADLKAVQDKLKTFVESGQLGPFTNAYFLGGHPAYYLDP 202 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESGAVGAVNME 255 E NL+ AHYLEAL Q + + AVFG KNPH +VGG+ C A+ + Sbjct: 203 ETNLIATAHYLEALRLQVKAARAMAVFGAKNPHTQFTVVGGVTC---------YDALTPQ 253 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 R+ +++ T F++ V IPD L + K W++ G +++G FP +++ Sbjct: 254 RIAEFEALWKETKAFVDEVYIPDLLVVAAAYKDWTQYG---GTDNFITFGEFPK--DEYD 308 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 S G V DF N+ P D Q++E V H+WY RHP+ G T P Y Sbjct: 309 LNSRFFKPGVVFKRDFKNIKP---FDKMQIEEHVRHSWY---EGAEARHPWKGQTQPKYT 362 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 L+ +RYSW+KAPR+ G ME GPLA+ LIAY +G D ++ Sbjct: 363 ------------DLHGDDRYSWMKAPRYMGEPMETGPLAQVLIAYSQGHPKVKAVTDAVL 410 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 + L + + STLGR R E A + + N+ G+ P Sbjct: 411 AKLGVGPEALFSTLGRTAARGIETAVIAEYVGVMLQEYKDNIAKGDNVIC-----APWEM 465 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + GVGF APRG L HW I DGKI +Q VVP+TW PR K ++ EA+L+ T Sbjct: 466 PKQAEGVGFVNAPRGGLSHWIRIEDGKIGNFQLVVPSTWTLGPRCDKNKLSPVEASLIGT 525 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +A ++P+EILRT+HSFDPC+AC HV+ +E+ ++ Sbjct: 526 PVADAKRPVEILRTVHSFDPCIACGVHVIDGHTNEVHKFRI 566 >UniRef50_P18188 Periplasmic [NiFe] hydrogenase large subunit n=22 Tax=Deltaproteobacteria RepID=PHNL_DESFR Length = 564 Score = 524 bits (1348), Expect = e-147, Method: Composition-based stats. Identities = 244/601 (40%), Positives = 339/601 (56%), Gaps = 43/601 (7%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M+ T T +VVDPITRIEGH+R V + + +A S +FRGLEIIL Sbjct: 1 MAESKPTPQSTF---TGPIVVDPITRIEGHLRIMVEVE-NGKVKDAWSSSQLFRGLEIIL 56 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +GRDPRDA F +R CGVCT VHALAS ++DA+ + +P NA ++RN+++A+ + HDHL Sbjct: 57 KGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHL 116 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSS-WPKSSPGYFFDVQNRLKKFVEGGQL 179 VHFY L +DW+DV ALKADP K ++LA S++ P +S VQ++LK FVE GQL Sbjct: 117 VHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQL 176 Query: 180 GIFRNGYW--GHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM 237 GIF N Y+ GH Y LPPE +L+ AHYLEAL Q + A+ GGKNPH + V G Sbjct: 177 GIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGG 236 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 + + L ++ F+N IPD LA+ F K W IG Sbjct: 237 CSN--------YQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIG---G 285 Query: 298 DKCVLSYGAF--PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR 355 L++G F D + + + P G + D VD VD + E V ++WY Sbjct: 286 TSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDL---GKVDNVDLGAIYEDVKYSWYA 342 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLAR 415 D G+HP+DG+TDP Y +L++++ YSW+KAPR++G AMEVGPLAR Sbjct: 343 PGGD--GKHPYDGVTDPKYT------------KLDDKDHYSWMKAPRYKGKAMEVGPLAR 388 Query: 416 TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 T IAY KG + VD ++ L++P + + STLGR R E ++ + ++ Sbjct: 389 TFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMAD 448 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 + N A P E +GVG +APRGAL HW I+ KID +Q VVP+TWN Sbjct: 449 SGAKDNTLCA------KWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWN 502 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 PR +G E AL+ T +A P++P+EILRT+H+FDPC+AC HV+ + +E++ + Sbjct: 503 LGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVHVIEPETNEILKFK 562 Query: 596 V 596 V Sbjct: 563 V 563 >UniRef50_P31883 Quinone-reactive Ni/Fe-hydrogenase large chain n=39 Tax=root RepID=MBHL_WOLSU Length = 576 Score = 522 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 225/589 (38%), Positives = 322/589 (54%), Gaps = 31/589 (5%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+VVDPITRIEGH+R EV +++ NVI +A S T++RGLE IL+GRDPRDA F +RI Sbjct: 2 TKRIVVDPITRIEGHLRIEVVVDENNVIQDAFSTATLWRGLETILKGRDPRDAGFFTQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT H A + A+E+A+GIK P NA +IR++M +L HDH VHFY L G+DW D+ Sbjct: 62 CGVCTYSHYKAGISAVENALGIKPPLNAELIRSLMSISLILHDHTVHFYHLHGLDWCDIT 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGY-FFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 ALKADP S+LA S P ++ VQ R+ +F G LG F N YWGH Y+ Sbjct: 122 SALKADPVAASKLAFKYSPNPIATGADELTAVQKRVAEFAAKGNLGPFANAYWGHKTYRF 181 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVN 253 PE NL+ +HYL+AL+ QR ++ A++G K PHP + VGG+ + A++ Sbjct: 182 SPEQNLIVLSHYLKALEVQRVAAQMMAIWGAKQPHPQSLTVGGVTS--------VMDALD 233 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 RL + ADF+N D + + K + G + K SY P + Sbjct: 234 PSRLGDWLTKYKYVADFVNRAYYADVVMAAEVFKSEPSVLGGCNVKNFYSYQEIPLNKTE 293 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + + G V++GD + V ++ + E HAWY+ + HP+DG DP Sbjct: 294 W-----MYSTGIVMDGD---ITKVHEINEDLITEEATHAWYK---ENKALHPYDGQQDPN 342 Query: 374 YNPG------DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 Y G+ + ++E+ +Y+WIKAPR+ G +EVGPLA ++ + Sbjct: 343 YTGFKDMETVGPDGTMVKTKVIDEKGKYTWIKAPRYGGKPLEVGPLATIVVGLAAKNPRI 402 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + + + LPL+ + +TLGR R E + +A F+ L+ NLK + Sbjct: 403 EKVATQFLKDTGLPLAALFTTLGRTAARMLECKLSADYGFEAFNSLIANLKVDQSTYTTY 462 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + + + G PRG L HW I++G I YQ VVP+TWNA PRD G G Sbjct: 463 KIDKNKEYKGRYMGT----VPRGVLSHWVRIKNGVIQNYQAVVPSTWNAGPRDANGTKGP 518 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 YEA+L+ K+ QPLEI+R +HSFDPC+AC+ HV+ G+EL +V Sbjct: 519 YEASLVGMKLQDLSQPLEIIRVIHSFDPCIACAVHVMDTKGNELSQYRV 567 >UniRef50_D1BNB0 Nickel-dependent hydrogenase large subunit n=9 Tax=Bacteria RepID=D1BNB0_VEIPT Length = 633 Score = 521 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 273/628 (43%), Positives = 390/628 (62%), Gaps = 53/628 (8%) Query: 17 RRLVVDPITRIEGHMRCEVNIND-QNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+VVDPI+RIEGH+R E+ +++ + +A+S GT +RG+E++ + RDPRD WAFV+RI Sbjct: 2 KRVVVDPISRIEGHLRVEIKVDEASGKVEDALSSGTAWRGIELVAKDRDPRDLWAFVQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVCT HALA++ A+EDAIGI +P NAN IRNIM ++L HDH+VHFY L +DW+ + Sbjct: 62 CGVCTTTHALAALRAVEDAIGITIPKNANYIRNIMHSSLDVHDHIVHFYHLHALDWVSPV 121 Query: 136 DALKADPRKTSELAQSL----------------------SSWPKSSPGYFFDVQNRLKKF 173 AL ADP KT++L + +PK++ YF VQ ++KK Sbjct: 122 AALSADPAKTAQLQNDVLATYNVSGLAPAETASKDSAYPKEFPKATTAYFTAVQQKVKKI 181 Query: 174 VEGGQLGIFRNGYWGHPQY-KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW 232 VE GQLGIF +W HP Y LPPE +LM +HYL LD QR+IV H VFGGKNPHP++ Sbjct: 182 VESGQLGIFSAQWWDHPDYNLLPPEVHLMAVSHYLNILDRQRDIVIPHVVFGGKNPHPHY 241 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI 292 IVGGMPC+I++++ A +N +RL V+ I T D ++N +PD LAIG+ I Sbjct: 242 IVGGMPCSISMNDMNA--PINTQRLAAVEQSIALTKDLVDNFYVPDLLAIGKIYVEKGMI 299 Query: 293 -GTGLSDKCVLSYGAFPDI------ANDFGEKSLLMPGGAVIN-------GDFNNVLPVD 338 G GL+ K V+SYG +PD D+ +K ++ G V N F + D Sbjct: 300 DGGGLAKKRVMSYGDYPDDTYTGISNGDYHKKCIVRSNGVVENFALGVDKATFIPLEGKD 359 Query: 339 LVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWI 398 +DPQ + E VDH+W+ YP+ HP +G+TDP + G+ + L+E ++YSWI Sbjct: 360 FMDPQYLSEEVDHSWFTYPDGTKTLHPIEGVTDPKFTG-PKSGTKEKWEFLDEDKKYSWI 418 Query: 399 KAPRWRGNAMEVGPLARTLIAYHK-----------GDAATVESVDRMMSALNLPLSGIQS 447 K+P ++G EVGPLA+ ++ Y K ++ V +D + L +P + Sbjct: 419 KSPTFKGKTAEVGPLAKYIVVYTKVKQGIIKDPTWAESMIVRQIDTVSQVLGVPAHVWMT 478 Query: 448 TL-GRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTE 506 T+ GR CR +AQ AA QYFF+KL++N+KNG+ A K+EP TW + +GVG + Sbjct: 479 TMVGRTACRGLDAQVAANISQYFFNKLVSNIKNGDTTVADMTKFEPNTWDKDAKGVGLVD 538 Query: 507 APRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 APRG LGHW I+DG+ YQC+VP+TWNA P+ + GAYE ++++T + I ++PLEI Sbjct: 539 APRGGLGHWIHIKDGRSANYQCIVPSTWNACPKTAANEHGAYEDSMIDTHVKIADKPLEI 598 Query: 567 LRTLHSFDPCLACSTHVLGDDGSELISV 594 L+ +HSFDPCLAC+TH+ G +++SV Sbjct: 599 LKVIHSFDPCLACATHLYNKKGEKIVSV 626 >UniRef50_Q31DZ6 Ni,Fe-hydrogenase large subunit n=6 Tax=root RepID=Q31DZ6_THICR Length = 568 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 230/588 (39%), Positives = 322/588 (54%), Gaps = 27/588 (4%) Query: 10 YTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 T + +++V+DP+TRIEGH+R E+ +++ N +T A + G +FRG+E IL+GRDPRD Sbjct: 1 MTESTKKQKIVIDPVTRIEGHLRVEIEVDEHNTVTEAWASGQLFRGIETILKGRDPRDTG 60 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 +RICGVCT H AS+ A+E+A I P NA I+RN++ L+ DHLVH+Y L + Sbjct: 61 LIAQRICGVCTNSHYRASISAVENAYDIVPPRNAEIVRNLVSLALFVQDHLVHYYHLHSL 120 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKS-SPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 D++DV AL+AD K SE+A P + S G VQ +L FV G+LG+F NGYWG Sbjct: 121 DYVDVTSALEADCHKASEIAHQWHKHPYNCSQGDLAAVQEKLANFVNAGRLGLFANGYWG 180 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGA 248 H QYKL PE NL+ HYLEAL QRE+ K A+FGGK PHP +V G ++ Sbjct: 181 HAQYKLSPEENLIHMNHYLEALRIQREVSKAIAIFGGKTPHPQNLVVGGVTSV------- 233 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 + +N +RLN II T +F+ +PD + + G G + G + Sbjct: 234 MDMLNPQRLNDYLFIIKDTQEFLKRAYLPDMKMVVAAYGDNIKAGEGRGHGNFMCSGGYQ 293 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + L G + DF+ +D D Q+ E +WY D+ P+D Sbjct: 294 L-----SDDEPLFASGIIWGHDFS---KIDAFDDTQITEEASRSWYA---DEAPTRPYDE 342 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATV 428 T+P Y + G+ L + +YSWIKAPR++G MEVGP AR +I Y K Sbjct: 343 TTEPDYTDMNADGT------LKTEGKYSWIKAPRYQGQPMEVGPAARMIIGYVKKAKTVR 396 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + M L L S +GR RA EA+ + F +L+ N+K + + Sbjct: 397 PYMQHFMDDTGLELIDFSSAIGRNAARAVEAEVVCDLIFAFVSELIENIKYYDET--TWT 454 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 K++ P E +G E PRG L H+ I + K+ YQ VVPTTWNASP+D +G G Y Sbjct: 455 KYDFEALPLETKGRAVLEVPRGMLSHFIRIEEAKVKNYQAVVPTTWNASPKDGQGVRGPY 514 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E A++ K+A P+QPLE+LR +HSFDPCLAC+ HV+ G L +V Sbjct: 515 EEAIVGLKLADPQQPLEVLRAVHSFDPCLACAVHVIDAQGQTLSEHRV 562 >UniRef50_C0VXU2 Hydrogenase (Acceptor) n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VXU2_9CORY Length = 584 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 241/589 (40%), Positives = 358/589 (60%), Gaps = 26/589 (4%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 A R+VVDPITRIEGH+R E+ +D+ + + A + T FRG+E +++G DPRD WAFV Sbjct: 1 MATERVVVDPITRIEGHLRIELEADDKKI-SKAWAETTQFRGIETVVKGHDPRDVWAFVG 59 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICGVCTG H++ASV A+EDA I +PD A IR ++L + HDH+VHFY L +D+++ Sbjct: 60 RICGVCTGTHSIASVAAVEDAFDITLPDQARRIRELILESQEVHDHVVHFYHLHALDFVN 119 Query: 134 VLDALKADPRKTSELAQSLS-SWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 V+ A +ADP+K + A S+ +W ++ F +V+ ++ ++ GQL +F GYW HP Y Sbjct: 120 VVSAAQADPQKAVDFANSIGSTWSGNNVDRFAEVKKTVQSILDSGQLSVFTGGYWEHPDY 179 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +LPPEANLM +HYL+AL FQR I++I+ VFGGKNPHPN++VGGM C+I+ D+S V Sbjct: 180 RLPPEANLMAVSHYLDALQFQRSIIRINTVFGGKNPHPNFLVGGMACSIDPDKSETV--- 236 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 N L+ ++ DF+ N PDA+AI K + +IG S L+ G + Sbjct: 237 NQVSLDQIKKWTKEIHDFVRNCYFPDAVAIMSVYKDYFDIGQ--SSPNFLAVGMAGATYS 294 Query: 313 DFGEKSLL------MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV-GRHP 365 +S + + G ++GD + V +P ++ E + AWY Y + P Sbjct: 295 GDPAESRIPTIHPEIKPGVFLDGDLH---TVHPFEPWKITEGISSAWYTYADGDEAQLTP 351 Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDA 425 G T P Y G + L + ++Y+W KAPR+ G AM++GP+AR L+AY++G++ Sbjct: 352 DVGETTPQYT-----GPTPPYEWLADDQKYTWSKAPRYDGRAMQMGPIARVLLAYNQGES 406 Query: 426 ATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY-FFDKLMTNLKNGNLAT 484 TV+ VD + L + L + ST GR L RA E+ A + + + + +G++ Sbjct: 407 TTVKLVDDALKTLGITLEQLNSTGGRTLARAVESVTTADYMIEKTLPEFLDGIAHGDIDV 466 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 + KWEP++WP E +G+ F E RG L H+ ++D K++ YQ VVPTTW ASPRD GQ Sbjct: 467 FNGSKWEPSSWPKETKGMAFVEVARGMLSHFIHVKDSKVENYQAVVPTTWLASPRDKTGQ 526 Query: 545 IGAYEAALMNT---KMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 +G YE AL + ++PLE+LRT+HSFDPC+AC+ H++ +G E Sbjct: 527 LGPYEEALAGNGQHPLVRNDEPLEVLRTIHSFDPCMACAVHIMDPEGEE 575 >UniRef50_D1U6F4 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6F4_9DELT Length = 572 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 229/590 (38%), Positives = 327/590 (55%), Gaps = 48/590 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 ++VDP+TRIEGH+R E + + +I S +FRGLEIIL+GRDPRDA F +R CGV Sbjct: 18 VIVDPVTRIEGHLRVEAVVENGKIIDV-RSSSQLFRGLEIILKGRDPRDAQHFTQRSCGV 76 Query: 79 CTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 CT HALASV +++A+G+ +P NA IIRN++LA + HDHLVHFY L +D++DV Sbjct: 77 CTYTHALASVRCVDNAVGVDKVLPRNATIIRNLVLAAQFMHDHLVHFYHLHALDFVDVSA 136 Query: 137 ALKADPRKTSELAQSLSSWPK------SSPGYFFDVQNRLKKFVEGGQLGIFRNGYW--G 188 L AD K +E+A ++ + SS ++ +K V+ G+LGIF N Y+ G Sbjct: 137 CLNADVAKAAEMAAGVAQTVRKDPVLVSSKADLQKTKDTVKSIVDSGRLGIFTNAYFLGG 196 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESG 247 HP Y LPPE NL+ HYL+AL Q + + AV+G KNPH + V GG+ C Sbjct: 197 HPAYVLPPEVNLIATDHYLKALHMQVKAARAMAVWGAKNPHTQFTVMGGVTC-------- 248 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + + +N ++ DF+ + IPD LA+ F K W+ IG +S G F Sbjct: 249 -YEGLTDKYINDFLALYKEVKDFVLDCYIPDLLAVAGFYKDWAAIG---GTTNFMSCGEF 304 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 P + S + G ++N N+ VD +DP ++ E V H+WY+ D +HP++ Sbjct: 305 PVPGGETDLTSRYVKPGVIMN---RNLGQVDALDPSKIAEHVKHSWYK---DGAAQHPYN 358 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G+TDP Y +++ +YSW+KAPR+ G A+EVGPLA L+ Y G Sbjct: 359 GVTDPMYTSL------------DDKTKYSWMKAPRYNGKAVEVGPLATCLVNYGLGHPEF 406 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 VD ++ AL + + STLGR R E K + + L N+ G+ Sbjct: 407 KTYVDFVLKALGVGPEALFSTLGRTGARGIECLIVTLKTDEWVNDLKENVAKGDRDIC-- 464 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + P +GVG+ APRGAL HW I+D KID +Q VVP+TWN PR G Sbjct: 465 ---KDWDMPASAQGVGWVNAPRGALSHWINIKDSKIDNFQLVVPSTWNIGPRCDNDLPGP 521 Query: 548 YEAALM-NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E AL+ NT +A PE+P+EILRT+HS+DPC+AC HV+ + + ++ Sbjct: 522 LEEALLDNTPIADPERPVEILRTVHSYDPCIACGVHVIDNKTGNVKKFRI 571 >UniRef50_A5FSH9 Nickel-dependent hydrogenase, large subunit n=5 Tax=Dehalococcoides RepID=A5FSH9_DEHSB Length = 526 Score = 483 bits (1243), Expect = e-135, Method: Composition-based stats. Identities = 183/587 (31%), Positives = 290/587 (49%), Gaps = 70/587 (11%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DPITRIEGH++ E ++ + +A GT+FRG EI ++ RDPRDA +RIC Sbjct: 2 QKIVIDPITRIEGHLKIEATVDGGE-VKDAKCVGTLFRGFEIFMKDRDPRDAVHITQRIC 60 Query: 77 GVCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 GVC H + ++ A G+ K+P+N I+RN++ + H+VHFY LA +D++DV Sbjct: 61 GVCPTSHGTTAALNLDAAFGVADKIPNNGRILRNLIQGANYIASHIVHFYHLAALDYVDV 120 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ---LGIFRNGYWGHPQ 191 + D L V++ + + + G L F Y G Sbjct: 121 TEVADYDGTDPELL----------------KVKDFIARALAAGDMSMLAPFYPRYEG--D 162 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 Y+LP + AHY+EAL+ +R ++ A++ G+ PH +V G G Sbjct: 163 YRLPKKVAQAAVAHYVEALNMRRLAHELSAIYSGRMPHSVAVVAG----------GVTSH 212 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 +++ ++ S + FI+NV +PD +A+ + + IG G + +LSYG F A Sbjct: 213 PSIDSISSFMSKLNTLRHFIDNVYLPDVIAVAETYPDYFGIGVGCGN--LLSYGVFDLEA 270 Query: 312 N--DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 N + + L G V D + DP ++ E + + W++ + +P + + Sbjct: 271 NGTNLATRQRLFTQGTVSASDL----TLHTFDPNKITEDIKYGWFK---GETNEYPLNEV 323 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 T+P + + E YSW+KAPR+ EVGPLAR ++ Y GD + Sbjct: 324 TEPDHT---------------KAEGYSWLKAPRYENTPYEVGPLARMVVNYVAGDPVVQK 368 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 V+ ++ + + STLGR RA E + A ++ + +L Sbjct: 369 MVNDTLAHFGAGPAALFSTLGRHAARALECKIVADEMVKWVMELKIG----------EPV 418 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYE 549 P G+G EAPRGALGHW I + KI YQCVVP+TWN SP+D +G G E Sbjct: 419 CADYEIPESAEGMGLWEAPRGALGHWIKIENHKISNYQCVVPSTWNCSPKDGQGVNGPVE 478 Query: 550 AALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 AL+ TK+ + P E++R + SFDPCLAC+ H++ G+E+ +V Sbjct: 479 QALIGTKVRDNDNPFELVRIVRSFDPCLACAVHLVSPTGNEISRFRV 525 >UniRef50_C8WGK5 Nickel-dependent hydrogenase large subunit n=3 Tax=Coriobacteriaceae RepID=C8WGK5_EGGLE Length = 554 Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats. Identities = 200/578 (34%), Positives = 305/578 (52%), Gaps = 43/578 (7%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R V+DPITRIEGH+R E+ + +++A G FRG+E++++ R P DA V+RICG Sbjct: 3 RSVIDPITRIEGHLRVEMEVT-NGKVSDAWVSGGCFRGMEMVVENRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA +S A E A GIK+ +NA IIRN++ + H H++ FY LA +D+++ L+A Sbjct: 62 VCPVSHAHSSAIAAEKAYGIKISNNARIIRNLLEGAQFLHSHILWFYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH---PQYKL 194 LKADP +LAQ+ + S F ++ RL F + GQL IF ++ Y+L Sbjct: 122 LKADPADAYDLAQAAGTSMNS---DFVALKERLANFADNGQLSIFSGNWFDAEDGTAYQL 178 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 PPE +L+ AHYLEAL Q + +I A+ GGK PH +V G + D Sbjct: 179 PPELDLICTAHYLEALTMQAKASQISAIIGGKMPHVMTLVPGGTAFVPTD---------- 228 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ++L+ ++++ D++ + MIPD LAI + G G +++G F + D+ Sbjct: 229 QKLDELKALADEIYDWVESTMIPDTLAIAPYYIDALNWGKGCGR--YVAWGVF-EGPGDY 285 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 + M + G ++ L + V + E++ +WY+ D P+ +T+P Y Sbjct: 286 ASYTEQMANRYLPMGVIDDKLNLSDVQENLITEYMGRSWYK--GDATYTSPY-FVTEPEY 342 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +V ++RY+W+K P + G E G L+R L AY + VE VD + Sbjct: 343 TEYNV------------EDRYTWVKCPAYDGKPYEAGGLSRVLAAYKRNVPFVVEQVDGL 390 Query: 435 MSALNLPLSGI--QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 + AL P QSTLGR R E + AG ++ + +L+ LK+G+ Sbjct: 391 LEALGAPGQIGVAQSTLGRTAVRQIETLYIAGLMKDWVAELIEALKSGDSEYFREP---- 446 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 G GF EAPRGAL H +I+DGKI+ YQ ++PTTWN +P + G+ G E AL Sbjct: 447 --STITGAGTGFWEAPRGALYHSESIKDGKIEGYQIIIPTTWNLAPINESGEHGPMEQAL 504 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSE 590 + + E+P+ LRT+HSFDPC AC+ H+ + Sbjct: 505 IGNPVGDIEKPINALRTVHSFDPCTACAVHITEPATGK 542 >UniRef50_Q24X55 Hup-type Ni,Fe-hydrogenase large subunit n=6 Tax=Bacteria RepID=Q24X55_DESHY Length = 518 Score = 467 bits (1202), Expect = e-130, Method: Composition-based stats. Identities = 196/580 (33%), Positives = 292/580 (50%), Gaps = 66/580 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRIEGH++ EV + V+T+A S GTM+RG E +L+GRDPRDA ER CG Sbjct: 3 KVVIDPVTRIEGHLKVEVEVT-NGVVTDAKSIGTMYRGFEPLLRGRDPRDATYVTERTCG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC G H AS A++ A G KVP +IRN+M+ +W HDH +HFY L+ +D++D+ Sbjct: 62 VCAGSHGWASSLALDQAFGAKVPTGGRLIRNLMIGAMWLHDHPLHFYHLSALDYLDITAV 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 K + L V++++ K + G Y PE Sbjct: 122 AKYQGQDPGLLR----------------VKDKISKLIAAGDTAPLTPRYEPDAFCVNDPE 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + +HYL AL+ Q + K+ A+F GK PH + IV G G N+E + Sbjct: 166 LVTLAVSHYLHALNMQAKAKKMSALFAGKQPHQSSIVAG----------GVTMLPNIEVV 215 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQF-NKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +S++ D++ N+ + D L G P ++ G G L+YG F D Sbjct: 216 EQFRSMLLEQIDYLENIYLQDVLTFGTGPLLPLAQAGVGGGYGNFLAYGGFGL---DDEG 272 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 K L G V++G+ +NV+PV D ++ E V HAWY+ ++ G HP+D T P Sbjct: 273 KDFLFKQGIVLDGNLSNVMPV---DQSKITEGVTHAWYK--DNPNGDHPYDSDTVP---- 323 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 L +++ YS++KAPR+ G +EVGPLAR L+ +G + Sbjct: 324 -----------DLAKKDAYSFVKAPRYDGKPIEVGPLARMLVMQPQGLMDIIAKY----- 367 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 + + R RA E A ++ + ++L + G L TE W P P Sbjct: 368 ------NIKPGAVARHAARAFETVILAKEMINWVNQLEAEMGKG-LRIHDTEHWNP---P 417 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 +G+G TE PRGALGHW I+D + YQ VVPTTWN SP+D +G G E AL+ Sbjct: 418 ATGQGIGLTEVPRGALGHWIKIKDHVTENYQMVVPTTWNFSPKDAQGNYGPLEKALIGVP 477 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + P+ I+R + S+DPCLAC+ H++ +E+ +V Sbjct: 478 IPDENNPINIVRVIRSYDPCLACAIHLIDPQTNEIRKFKV 517 >UniRef50_Q6ARY7 Related to cytochrome-c3 hydrogenase (NiFeSe), large subunit n=1 Tax=Desulfotalea psychrophila RepID=Q6ARY7_DESPS Length = 499 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 189/567 (33%), Positives = 272/567 (47%), Gaps = 75/567 (13%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DP TRIEGH+ +N+ + + +A G M RG E ILQGR P DA V+RICGV Sbjct: 5 VKLDPFTRIEGHLAVSLNVQNNR-VKDAQCTGEMVRGFEQILQGRSPLDAQQIVQRICGV 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H +ASV A E A GI++P+NA + RNIMLA+ + H+ HFY L+ +D+ID+ L Sbjct: 64 CPVSHGIASVLAQEQAYGIQLPENARLQRNIMLASNYIQSHITHFYHLSALDFIDITAIL 123 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHPQYKLP 195 K + +QN +K + L F Y G +Y Sbjct: 124 ----------------DYKGGDAFLLAMQNWVKAELASKNLFPAAPFLPRYQG--RYLKD 165 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 + N+ +Y AL+ + ++ A+F GK PH IV G G V + Sbjct: 166 VDFNITALRNYFIALEMRATAHQLIAIFAGKMPHMASIVPG----------GITEKVTTK 215 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 ++ +S + + FINN D LAI + IG + LS+GAF D + Sbjct: 216 KIIQCKSKLAQLKGFINNSYRNDLLAITAEFPSYLSIGKSCGN--FLSFGAFGDANLE-- 271 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 KS L+P GA++ G ++ VD ++E V + Y + + P Sbjct: 272 -KSPLLPAGALLQG------KLEEVDDISIKEDVSFSKYSSDSGREKTVP---------- 314 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 + ++ YSWIKAPR+RG AMEVGPLAR ++A KG+ E+ + + Sbjct: 315 ------------EPHKSGAYSWIKAPRYRGEAMEVGPLARLMVAQAKGNKKMQEASNAFL 362 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 +L L+ + S LGR + R E + K + + ++L Sbjct: 363 QKTDLSLTDLDSCLGRHIARFIELEVIIEKCEEWMEQLR----------PDQPTAVDFNI 412 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P + G G EAPRGALGHW I KI Y+C+VPTTWN SP+D K G E +L+ T Sbjct: 413 PQQAEGRGMMEAPRGALGHWVTIEKQKIGRYECIVPTTWNCSPKDDKQIPGPVEQSLIGT 472 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTH 582 +A PLE R + S+DPCLAC+ H Sbjct: 473 IVADKTNPLEAARIVRSYDPCLACAVH 499 >UniRef50_D0WFL2 Periplasmic [NiFe] hydrogenase, large subunit, isozyme 1 n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFL2_9ACTN Length = 557 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 197/588 (33%), Positives = 303/588 (51%), Gaps = 52/588 (8%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R +DPITRIEGH+R E+ +ND ++T+A G FRG+E++++ R P+DA V+RICG Sbjct: 3 RTTIDPITRIEGHLRVEMEVND-GIVTDAWVSGGCFRGMELVVRDRTPQDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA A+ A E A GI +P++A IIRN++ + H H++ Y LA +D+++ L+A Sbjct: 62 VCPVSHAHAASIAAEKAYGIAIPNSARIIRNMLEGAQFLHSHILWLYNLAALDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ------ 191 L AD LA ++ F +Q+RL +F + GQL IF ++ + Sbjct: 122 LNADT----GLAYDVAEEYGLKNADFVSLQDRLARFADNGQLSIFSGNWFPTAEQYADGT 177 Query: 192 --YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 Y L PEA+L+ AHYLEAL+ Q +I AV GGK PH ++ G + D Sbjct: 178 NEYNLTPEADLIMTAHYLEALEMQGTASEIAAVLGGKMPHVMTLIPGGTMFVPTD----- 232 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 ++L+ ++ +I R +++ V +PD++A+G+F G G + ++G F Sbjct: 233 -----QKLDDLKGLIDRLYNWVAAVAVPDSIALGKFYPEAFNFGAGC--RRYGAWGVFER 285 Query: 310 IANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 F MP G + G N + V+ ++ E+V H+WY + PF+ Sbjct: 286 --ESFKMADRYMPSGVIELGPDGNYQ-LSEVEESKITEYVGHSWY---SGSEDLPPFEQG 339 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 +P Y N +RY+W K R+ G +E+G +R L+AY +GD E Sbjct: 340 VNPEYTEY------------NTDDRYTWNKCARYDGKPLEMGGASRVLVAYVRGDKFIKE 387 Query: 430 SVDRMMSALNLPLS---GIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 VD ++ AL ST+GR R E + A ++ + +L+ +K G+ + Sbjct: 388 HVDALLVALGGTPGDLSPFSSTIGRTALRQVETLYVATLMKEWLAELVEAIKGGDSTYFT 447 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIG 546 + E G GF EAPRGAL H +++GKI YQ ++PTTWN +P DP G G Sbjct: 448 K------SDAVEGEGTGFWEAPRGALYHSEKVKNGKIQDYQIIIPTTWNIAPLDPDGVHG 501 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 E AL+ + E+P+ LRT+HSFDPC AC+ HV+ + Sbjct: 502 PMEQALIGVPVTDMEKPIHALRTVHSFDPCTACAVHVVEPKTGKKFET 549 >UniRef50_B1I3L1 Nickel-dependent hydrogenase, large subunit n=6 Tax=Clostridia RepID=B1I3L1_DESAP Length = 485 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 188/583 (32%), Positives = 272/583 (46%), Gaps = 105/583 (18%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 R++VVDP+TRIEGH++ EV ++ + +A S G +FRGLEIIL+GRDPRDA +R Sbjct: 3 GARKIVVDPVTRIEGHLKIEVELDGNR-VHDAWSTGLLFRGLEIILKGRDPRDAQHITQR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGV H ++SV ++DA GI P N I+RN++ H++HFY LA +D++ Sbjct: 62 ICGVUPISHGISSVLCLDDAFGIIPPKNGRILRNLIQGANLIQSHILHFYHLAALDYVKG 121 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + F Y G Y+L Sbjct: 122 PE------------------------------------------TAPFVPRYEG--DYRL 137 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 PP+ + HY++AL +R+ ++ A+FG K PH + G G V Sbjct: 138 PPDVTAVVVGHYIQALAMRRKAHEMAAIFGAKIPHTTVFIPG----------GVTSTVTA 187 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 E++ + FI+NV IPD LA+ + W +G G K +LSYGA+P Sbjct: 188 EQVEAYAQKLRELISFIDNVYIPDVLAVAGAYEDWFSVGVG--TKNLLSYGAYPLTDEKD 245 Query: 315 GE-KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 K+L G G F + ++E V H+WY G+HPF+G T P Sbjct: 246 PNGKNLFFTRGVYAGGSFMP------MSADHIREHVTHSWYESKAG--GKHPFEGETVP- 296 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 ++++ YSWIKAPR+ + EVG LAR + D + D+ Sbjct: 297 --------------AVDKRGGYSWIKAPRYESYSCEVGALARQWVG---RDPQVIGLGDK 339 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 S +GR RA E A + + ++L + P Sbjct: 340 AF-----------SVMGRHFARAIETTKVAHAMLGWLEEL----------EPGQPAFRPH 378 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 P + +G G TEAPRGALGHW I + I YQ VVP+TWN PRD KG G E AL+ Sbjct: 379 DVPEKAKGFGLTEAPRGALGHWIEIENHVIKNYQAVVPSTWNIGPRDDKGVRGPLEEALV 438 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 T++A P+ P+E++R + +FDPC+AC+ HV+ G +S V Sbjct: 439 GTEVADPDNPIELVRIVRAFDPCIACAVHVMEVRGGSGVSRFV 481 >UniRef50_P13065 Periplasmic [NiFeSe] hydrogenase large subunit n=9 Tax=Deltaproteobacteria RepID=PHSL_DESBA Length = 514 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 169/595 (28%), Positives = 262/595 (44%), Gaps = 88/595 (14%) Query: 7 TQGYTINNAGR-RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 +Q T G+ ++ +DP+TR+EGH++ EV + D V+ A G MFRG E IL+GRDP Sbjct: 2 SQAATPAADGKVKISIDPLTRVEGHLKIEVEVKDGKVVD-AKCSGGMFRGFEQILRGRDP 60 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 RD+ V+RICGVC H ASV A +DA G+KV N I RN++ + H++HFY Sbjct: 61 RDSSQIVQRICGVCPTAHCTASVMAQDDAFGVKVTTNGRITRNLIFGANYLQSHILHFYH 120 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 LA +D++ D PR + + +R+K + Sbjct: 121 LAALDYVKGPDVSPFVPRYANADL----------------LTDRIKDGAKAD-------- 156 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDE 245 N G YL+AL+ +R ++ A+FGG+ PH +V G I Sbjct: 157 -----------ATNTYGLNQYLKALEIRRICHEMVAMFGGRMPHVQGMVVGGATEIP--- 202 Query: 246 SGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYG 305 +++ + F+ +P +G E G G + V+++G Sbjct: 203 -------TADKVAEYAARFKEVQKFVIEEYLPLIYTLGSVYTDLFETGIGWKN--VIAFG 253 Query: 306 AFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHP 365 FP+ D K+ L+ G I+G D + V+E+V H+++ + G H Sbjct: 254 VFPE---DDDYKTFLLKPGVYIDGKDEE------FDSKLVKEYVGHSFFDHSA-PGGLHY 303 Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDA 425 G T+P ++ YS++KAPR++ EVGPLAR + + Sbjct: 304 SVGETNP---------------NPDKPGAYSFVKAPRYKDKPCEVGPLARMWVQNPELSP 348 Query: 426 ATVESVDRM----MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 + + + S +GR + A E A ++ + + Sbjct: 349 VGQKLLKELYGIEAKKFRDLGDKAFSIMGRHVLVAEETWLTAVAVEKWLKQ--------- 399 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 E + + P G GFTEAPRGAL H+ I+D KI+ YQ V T WNA+PRD Sbjct: 400 -VQPGAETYVKSEIPDAAEGTGFTEAPRGALLHYLKIKDKKIENYQIVSATLWNANPRDD 458 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 GQ G E AL+ + + P+ + R + S+DP L C+ HVL + E V + Sbjct: 459 MGQRGPIEEALIGVPVPDIKNPVNVGRLVRSYDPULGCAVHVLHAETGEEHVVNI 513 >UniRef50_Q1NRB8 Nickel-dependent hydrogenase, large subunit n=2 Tax=Deltaproteobacteria RepID=Q1NRB8_9DELT Length = 504 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 184/566 (32%), Positives = 274/566 (48%), Gaps = 64/566 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + P+TRIEGH+ + + V+ +A G MFRG EI+L+GRDP D+ +RICG Sbjct: 2 KIDIGPVTRIEGHLNVQTTVE-NGVVVDARCEGEMFRGFEILLRGRDPLDSQQITQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA+AS YA EDA + VP N I+ N++ +DHL+HFYQL +D++D+ Sbjct: 61 VCPYAHAIASSYAQEDAYRLSVPPNGRILHNLIQGANHLYDHLLHFYQLCALDYVDITAV 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 L+ R + + K++ L Y + + Sbjct: 121 LEYTGRD---------PELSKVRDWVKAEVDSGKRYPAAPFLPRLDGKYLDN------RD 165 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 ANL +YL A++ +++ + A+FGG+ PH I G G +++ + Sbjct: 166 ANLGAIKNYLSAMNMEKKANQAAAIFGGRFPHATSIFPG----------GCTQNASIDLI 215 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 QS+I DFI+ IPD LA+ + EIG S LSYG P E Sbjct: 216 LAYQSLIREVRDFIHLKYIPDVLAVAGAFPEYWEIGQ--SKGGFLSYGHMPLGPARNSE- 272 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L+ G ++ + V+ ++++ V+HA Y ++ + D P Sbjct: 273 -RLLAPGVLLGD------QLSAVELGKIRQDVNHALYSSASNLT-------VRDAAIVPQ 318 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD-AATVESVDRMMS 436 KG E YSWI APR+ G +EVGP AR ++ Y +G + V+R Sbjct: 319 PDKG----------GEAYSWIMAPRYDGQMVEVGPAARVMVDYAQGHNPEIKKLVERFAG 368 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 N+ + + S LGR L RA A A + ++L + A + + +P P Sbjct: 369 HANISANQLNSVLGRHLSRAILAAVIADFVLAESERL-------DPAAPTMAELDP---P 418 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 G G TEA RGAL H+ I + KI Y+CVVPTTWNASPRD +G GA E+AL+ T+ Sbjct: 419 ASGEGFGITEASRGALLHYIRIENYKIAKYECVVPTTWNASPRDDQGTPGAMESALIGTR 478 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTH 582 + PE+ +E R + SFDPCLAC+ H Sbjct: 479 VQNPEEQIESKRIVRSFDPCLACAVH 504 >UniRef50_A1VCV1 Nickel-dependent hydrogenase, large subunit n=2 Tax=Desulfovibrio vulgaris RepID=A1VCV1_DESVV Length = 488 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 160/567 (28%), Positives = 245/567 (43%), Gaps = 97/567 (17%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + +DP+TRIEGH++ EV + + V+ A G M+RG E IL+GRDPRDA V+ Sbjct: 14 TGRTTIAIDPVTRIEGHLKAEVVVENGKVVD-ARLSGGMYRGFETILRGRDPRDASQIVQ 72 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICGVC H+ ASV A+++A G KVP+N I RN++ + H++HFY L+ D++ Sbjct: 73 RICGVCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQ 132 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 D F + + Sbjct: 133 GPD------------------------------------------TAPFVPR-FPKSDLR 149 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 L E N G Y+EAL+ +R ++ A+FGG+ PH V G I Sbjct: 150 LSKELNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVGGATEIP----------T 199 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 E+L + + DF+ +P IG K ++G G L GAFP D Sbjct: 200 KEKLVEYAARFKKVRDFVEQKYVPVVYTIGSKYKDMFKVGQGFK--AALCVGAFPL---D 254 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 K L G G DP +++E+V ++W+ + G + +G T P Sbjct: 255 NSGKKHLFMPGVYAKGKDMP------FDPSKIKEYVKYSWFA--EETTGLNYKEGKTIP- 305 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 ++ YS++KAPR+ G ++EVGPLAR + + + + Sbjct: 306 --------------APDKAGAYSFVKAPRYDGLSLEVGPLARMWVNNPELSPVGKKLLKD 351 Query: 434 MM-----SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + +L S +GR + RA E + G ++ + ++ + Sbjct: 352 LFGISAKKFRDLGEEAAFSLMGRHVARAEETYYMLGAIEGWLKEIKAG----------ED 401 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 P G GFTEAPRG+L H+ ++D KID YQ V + WN +PRD GQ GA Sbjct: 402 TVVMPAVPASAEGTGFTEAPRGSLLHYVKVKDSKIDNYQIVSASLWNCNPRDDMGQRGAV 461 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDP 575 E AL+ + + P+ + R + +FDP Sbjct: 462 EEALIGIPVDDIQNPVNVARLIRAFDP 488 >UniRef50_UPI0001C42966 [Ni/Fe] hydrogenase, large subunit n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42966 Length = 473 Score = 400 bits (1028), Expect = e-110, Method: Composition-based stats. Identities = 151/580 (26%), Positives = 252/580 (43%), Gaps = 110/580 (18%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V++P+TRI G M +V I + V+ A + G +FRG E +L GR P DA F +RIC Sbjct: 3 KKIVINPLTRISGFMEIDVYIENNRVVD-AKTKGHLFRGFEQMLVGRSPFDAVYFTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H++AS A+EDA+ I + +R+I+ + +H+ HFYQ D++ + Sbjct: 62 GICSAAHSIASSLALEDALNIHPLEQGRYLRDIIHCCEFLQNHVRHFYQYTVPDYVKLES 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + H ++LP Sbjct: 122 NSLFNT---------------------------------------------DHHDFRLPK 136 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + N HY E+L++ R ++ A+ GGK PH + + G G E Sbjct: 137 QINDRISRHYFESLEYSRLAHQMLAILGGKAPHNHGVFIG----------GITTQATAEN 186 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + + + + + FIN+ MIPDA I + + +G G + +L+YGAF N++ + Sbjct: 187 VVKLDDSLQKISRFINDKMIPDAYDIAAYYSDYYRLGGGYGN--LLTYGAF----NNYKD 240 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 L + + NN L V+ + ++E +D++WY+ Sbjct: 241 LGTLYVDPLISKMNANNNL-VEPFQEKNIKEKIDYSWYK----------------ASNAA 283 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 ++ YSW+KAPR+ G EVGPLAR +++ Sbjct: 284 YRPDSEMAEPDMEMNEKAYSWVKAPRYEGLPFEVGPLARLILSGE--------------- 328 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 S + R L RA EA+ ++ ++ + + + P Sbjct: 329 -----YQNGISAMDRTLARALEAKKICEIMKELLHSVI----------PNVDLQKAYEIP 373 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + G G + RGALGHW + + KI YQ + P+TW+ S +D G G E AL+ T Sbjct: 374 EQASGRGLVDTIRGALGHWLKVENKKISFYQIITPSTWDFSTKDDLGYRGVAEEALIGTP 433 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + P P E+ R L SFDPC++C+THV G ++ +++V Sbjct: 434 INDPNNPAEVGRILRSFDPCMSCATHVYSP-GKQMKTIKV 472 >UniRef50_A5I2W3 Hydrogenase large subunit n=15 Tax=Clostridium RepID=A5I2W3_CLOBH Length = 471 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 155/582 (26%), Positives = 251/582 (43%), Gaps = 115/582 (19%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + +DPITRI G + +V + D ++ + G +FRG E +L+GR P D+ F ERI Sbjct: 2 GKIITIDPITRISGFLEIKVKVEDNIIVDGE-TSGLLFRGFEKMLEGRPPLDSIYFTERI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ HA AS A+E+A+ I N IR++M + +HL FY ++++ Sbjct: 61 CGICSTAHATASTLALENALNITPSINDIYIRDMMHGFEFIQNHLRQFYCFTVPSYVNLP 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + P++ S+ +LP Sbjct: 121 NIRPIYPQEYSDF--------------------------------------------RLP 136 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + N +HY E + + R + AV GGK PH + I VGG+ I+ Sbjct: 137 KKLNERISSHYEEGIKYSRLAHEALAVLGGKAPHSHGIFVGGVTVNIDSY---------- 186 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 +L +QSI+ F+N M+ D I Q+ + +G + +S+G F Sbjct: 187 -KLTKIQSILKAIKKFVNIYMLEDMNIIAQYYPEYFNLGNTYGN--FMSFGVFD---KYK 240 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 + + G +IN ++ D ++ E + +AWY +D + +P I + Y Sbjct: 241 DKNISYVKPGVIINN------KLENFDRDKITENIRYAWY--VSDTIIENP---IMNNEY 289 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 L ++ YS++KAPR+ MEVGPLAR IA Sbjct: 290 T-----------VDLKKEGAYSFVKAPRYADLPMEVGPLARLKIAGE------------- 325 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 +G S++ R + R E + L +K+ N Sbjct: 326 -------YTGGNSSMDRNIARVLETKKIINILYNISEKIQLLSNN----------QSAYN 368 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P G G + RGAL H+ I + I Y + PT WN SP+D KG G E +L+ Sbjct: 369 IPEGAFGEGLIDTTRGALSHFIKIENKTIKYYNIITPTAWNISPKDSKGTRGVGEKSLIG 428 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +K+ E+P+EI R + SFDPC++C+TH++ + +E + V+V Sbjct: 429 SKIDNIEKPVEIGRIIRSFDPCISCATHLV-SNNNEPVKVEV 469 >UniRef50_B1I619 Hydrogen:quinone oxidoreductase n=2 Tax=Clostridiales RepID=B1I619_DESAP Length = 475 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 167/577 (28%), Positives = 246/577 (42%), Gaps = 114/577 (19%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 G+++V++P TR G + EV + VI A T+FRG E+IL+ RDPRDA Sbjct: 5 TEKGQKIVINPTTRTLGASQVEVRVEAGRVIH-ARCGATVFRGFELILRDRDPRDAAYIT 63 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +RICG+C HA+A+ +A+ED G++ P N N++RN++ A +H+ HFY A D++ Sbjct: 64 QRICGICPTAHAIAASFAVEDLAGVRPPHNGNLLRNLIFAGDMLQNHIRHFYLFAVPDYV 123 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 + P Y Sbjct: 124 RGPECRPLVPP--------------------------------------------PTTDY 139 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +LP N Y +A+D R+ +I A+ GGK PHP+ I+ G V Sbjct: 140 RLPRAKNERLVDSYFQAIDVSRKAYEISALLGGKAPHPHGIIPGGSSVP----------V 189 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 + + SI+ F+ M+PD + + + EIG +D L++G FP Sbjct: 190 TAITVLNLLSIVKSIQKFVEERMLPDVYTLAEHYPDYFEIGVRGAD--FLNFGLFPLDPE 247 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 G PG AVI+G ++ VD ++ E H Y + + HP G T P Sbjct: 248 ASGHH---FPGAAVIDG------RMEAVDSGEISE---HLRYTHFEGEQLAHPARGETRP 295 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD 432 ++ YSW KAPR+RG A+E GPLA+ + Sbjct: 296 ---------------NPDKPGGYSWCKAPRYRGRALEGGPLAQLWVRGD----------- 329 Query: 433 RMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEP 492 S + R++ RA ++ AG ++ + L + Sbjct: 330 ---------YRRGVSVMDRLIARALISREVAGLMRKWLTALR----------PGQPVFNR 370 Query: 493 ATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P GVG T A RG LGHW + G+I YQ V PT WN SP D +G G E AL Sbjct: 371 YQVPESGTGVGLTGAMRGGLGHWLEVEGGRIKHYQIVTPTAWNYSPHDDQGGPGPVEEAL 430 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGS 589 + T +A ++P+EI R LHSFDPC++C HV+ D Sbjct: 431 IGTPVADAKEPVEIGRVLHSFDPCMSCVAHVIVLDEP 467 >UniRef50_A1HNH4 Nickel-dependent hydrogenase, large subunit n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNH4_9FIRM Length = 488 Score = 377 bits (968), Expect = e-103, Method: Composition-based stats. Identities = 165/567 (29%), Positives = 237/567 (41%), Gaps = 113/567 (19%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 + P+TRI +R EV++ V+ A +FRG+E++L GRD RDA FV+RICG+C Sbjct: 5 TLFPVTRIHEPIRVEVDVQGGRVVD-AWIGACLFRGVELMLTGRDVRDAPLFVQRICGIC 63 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 + HA+A+ A+ A ++ + N+++A + +HL HFY L D++ D+ Sbjct: 64 SSAHAVAAAQALASACRVQPTPAGQYLINLLMAADFLQNHLRHFYLLVLPDYVTGPDSAP 123 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 PR ++LP + N Sbjct: 124 FFPRT--------------------------------------------KGDFRLPKKLN 139 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 F H ALD ++ A+FG K PH I+ +G N ERL Sbjct: 140 DELFGHVRPALDLAARAHEMMALFGAKAPHQQTIMP----------TGVTERANAERLMA 189 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 +I+ +++ V + D L I ++ + + IG G LSYG FP+ G Sbjct: 190 YGAILQEIKEWVEKVYLADVLTIAEYYQDYFTIGRGYGH--FLSYGGFPEP----GTGQP 243 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 P G V NG +D ++ E + H WY+ +DQ RHP +G T Sbjct: 244 AFPVGLVENGGL-----PQPLDLTRITEHIHHGWYQ--DDQESRHPIEGRT--------- 287 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 ++ YSW KAPR+ E GPLAR I+ Sbjct: 288 ------AAAPDKSAAYSWCKAPRYGRLPAETGPLARAWISGE------------------ 323 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 S + R++ RA EA Q + ++ P T P Sbjct: 324 --YRRGISVMDRLIARAREALKICRLAQEWLARI----------APGAPTLAPYTLPPRG 371 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 GVG EA RGALGHW +GKI YQ V PT WN SPRD GQ G E AL+ T +A Sbjct: 372 EGVGLLEAMRGALGHWLRFEEGKISHYQIVTPTAWNFSPRDNLGQRGPVEEALIGTPIAA 431 Query: 560 PEQPLEILRTLHSFDPCLACSTHVLGD 586 PE +E+ R + SFDPC C+ H++ Sbjct: 432 PESLIEVGRVIRSFDPCFTCAAHLISA 458 >UniRef50_B2TM83 [Ni/Fe] hydrogenase, large subunit n=2 Tax=Clostridium botulinum RepID=B2TM83_CLOBB Length = 471 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 148/576 (25%), Positives = 240/576 (41%), Gaps = 112/576 (19%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V+DP+TRI G ++ EV++ + ++ A S G+ FRG E + QGR P D RICG Sbjct: 3 KIVIDPVTRISGLLKIEVDVENNKIVD-AKSTGSQFRGFEKMFQGRPPLDIIRLAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ HA+A+ A+E+A+ I N +IR+I + +HL Y A D++ + + Sbjct: 62 ICSTSHAIAATLALENALNITPDFNGKVIRDIAHGFEFLQNHLRTTYFFAFPDFVKITAS 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 ++G Y+LP + Sbjct: 122 NPLY-----------------------------------------KDGTDKELDYRLPED 140 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMER 256 YLEA+ + RE + AV GK PH + I VGG+ I++ E Sbjct: 141 ITKKINEDYLEAVKYSRECHRAIAVLAGKAPHCHGIWVGGISTYIDVPEK---------- 190 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 V+ IT +FI N ++ D I Q+ + +G G + ++ +G + +D+ Sbjct: 191 -ESVKYTITVVKEFIENKLLEDVKIIAQYYNDYFNMGKGYGN--LMDFGLY----SDYKA 243 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 A+ING + +D + E V +++ P V Sbjct: 244 PIKYTEASAMING------KKENIDVNNITENVKYSYLDIPGGMV--------------- 282 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 S T +Q+ YSW+ A R++ +ME GPLAR ++ + + Sbjct: 283 -MPGVSSTPEPNPYKQDAYSWVDAARYKNYSMEGGPLARQILNGYYENKI---------- 331 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 S + RIL R E+ + D + E P Sbjct: 332 ----------SAMDRILARVLESVKICESIIGLIDLMKLG----------QAVQEEWQIP 371 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 ++ G+G APRGALGHW +I + ++ Y + P+ WN SP D G EAAL+ T+ Sbjct: 372 SKVNGIGLIGAPRGALGHWLSIENKQVSNYTLIPPSAWNLSPTDSNNIKGPVEAALIGTE 431 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELI 592 + + P+EI R + SFDPC C+ HV D ++ Sbjct: 432 INDMKNPVEIGRIVRSFDPCSNCAAHVTSDRYDPIV 467 >UniRef50_Q46BG1 Methanophenazine-reducing hydrogenase, large subunit n=8 Tax=Methanosarcina RepID=Q46BG1_METBF Length = 596 Score = 370 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 166/639 (25%), Positives = 266/639 (41%), Gaps = 117/639 (18%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ VDP+TRIEGH R +N++ VIT+A S G RG E +LQ +DPRDA +RICG Sbjct: 3 QVTVDPLTRIEGHYRINTEVNEEGVITDAQSNGLQLRGFERLLQHQDPRDASLLSQRICG 62 Query: 78 VCTGVHALASVYAIEDAIGI--KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 VC H +A+ A++D G+ +VP + ++RN+ A + H H Y L G D Sbjct: 63 VCPVSHGIAAANALDDLFGVAGEVPIDGLLMRNVHQALNFIASHAAHIYLLWGPDL---- 118 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A+P LA+ + + ++Q R + Y+L Sbjct: 119 ----ANPAYRDILAK----YGDVGNAVWKELQGRFAPLI-----------------YQLD 153 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 + G ++ ++F+R + + ++ K PHP VGG+ + + + G + + Sbjct: 154 GTSYPAGSSYLGSIVEFRR-LHEAISLIASKMPHPVLQHVGGVVYSPTVADIGQILSYIT 212 Query: 255 ERLNLVQSIITRTAD--FINNVM------------------------------------- 275 + + V++ + +I N Sbjct: 213 KTMEFVEAFTLGVSPDIWIENTYRASSPQKAANFVLNHLQELLNKSLDNKDFSHSAGWGD 272 Query: 276 IPDALAIGQFNKPWSEIGTGL-------------SDKCVLSYGAFPDIANDFGEKSLLMP 322 +P A G +G + LSYG F N G Sbjct: 273 VPLFAAFGSELIGEKLLGLPISMKMDLAGTYKDPGKIGFLSYGVFFKPENGNGYDPTSPA 332 Query: 323 G-GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKG 381 + +G N ++ D +++ E ++H++Y +D R P++G+T P NP ++ Sbjct: 333 DSRVISSGYMNGYFKLEKFDYKKISESINHSFY--IDDVKDRPPWNGVTVPEGNPENIDY 390 Query: 382 SDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP 441 + + RYSW KAP + G EVGPLAR +I G+ V P Sbjct: 391 TK------GSKSRYSWTKAPHYDGIPCEVGPLARMII---MGEPLVTGLVKTFQDNGYYP 441 Query: 442 LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRG 501 + + R++ R E +L + + +++ G T+ + G Sbjct: 442 V----NNYTRMIARMQEILVVVPELTKWLTQ---DIQAGGKVAVHTDL----SMAKSSTG 490 Query: 502 VGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 +G EAPRGALGHW A D + LYQ VVP+TWN +PR+ + E AL+ TK++ Sbjct: 491 MGLWEAPRGALGHWVATGPDSMVTLYQAVVPSTWNLAPRNSQEIPSPVEQALIGTKISAA 550 Query: 561 E--------QPLEILRTLHSFDPCLACSTHVLGDDGSEL 591 E PL IL T S+DPCLAC+ H + G Sbjct: 551 ENALGVDYSNPLGILHTARSYDPCLACAVHTIDKTGKHP 589 >UniRef50_Q1NM23 Nickel-dependent hydrogenase, large subunit n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NM23_9DELT Length = 515 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 176/568 (30%), Positives = 264/568 (46%), Gaps = 55/568 (9%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+V+DP++R+EGH++ E I D VIT A + G +FRGLE L G D R A +R+ Sbjct: 2 TTRIVIDPLSRVEGHLKIETTIKD-GVITEARAAGLLFRGLEKALIGYDARVAQQVTQRV 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC HA A+ A+E A+GI+ P N ++RN++ HD L+HFY L+ +D+ID+ Sbjct: 61 CGVCPYSHAEAAALALEAAMGIRPPANGQLLRNLITGAYQVHDSLLHFYHLSALDFIDIK 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 L+ S + + + R ++ G F Y Q Sbjct: 121 KVLRY----------RGSDPVLNRVRDWVQAELRSERIFPG---APFLPRYRDDDQSWD- 166 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 +L+ +Y + ++ K+ A+FGGK PHP I G G + Sbjct: 167 QSDSLLLVRNYFSSFSTLADLHKMVAIFGGKAPHPVAIEAG----------GVTTRPTLG 216 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L ++++ R F+ D + + + + G G + +FP + G Sbjct: 217 MLAHYRTLLERIEAFVRGPYREDVFNVCRAFPNYFKEGRGYGNLL-----SFPFLPEADG 271 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 E + L GGA + G++ + + + E ++YR P P + Sbjct: 272 E-NHLFAGGARLAGEYRQL------ELDAISEDHTFSFYRQPEPS----PLAPLATHLLT 320 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 P + + ++L+ +YSWI+APR+ G MEVG +AR + +YH A E VDR Sbjct: 321 PLNRQEFQAENERLD--GKYSWIRAPRYHGEVMEVGAVARVINSYHHNR-AVKEEVDRTN 377 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 L L L+ S +GR L R A +L+ D++ + + Sbjct: 378 RELGLTLADYNSVMGRHLGRYLSALLIIERLKEQVDQVKDGVLG----------FSELEV 427 Query: 496 PTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P GVG TEA RGALGHW A +G I Y+ V+P+TWN SPRD G+ GA E L Sbjct: 428 PRNAVGVGITEASRGALGHWLATDGNGLIKNYEMVMPSTWNFSPRDAAGKPGAVEKMLQG 487 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH 582 T++ PEQPLE R S DPC+ACS H Sbjct: 488 TRIKNPEQPLEAARIARSADPCIACSVH 515 >UniRef50_Q24ZF8 Hup-type Ni,Fe-hydrogenase large subunit n=2 Tax=Desulfitobacterium hafniense RepID=Q24ZF8_DESHY Length = 478 Score = 365 bits (935), Expect = 3e-99, Method: Composition-based stats. Identities = 160/581 (27%), Positives = 246/581 (42%), Gaps = 119/581 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + V+ P TRI M E + VI +A T++RG E IL+GR D + +RIC Sbjct: 16 EKKVIFPFTRIHNPMLVEAYLE-NGVIQDAFISDTLYRGFEQILEGRPAFDMPYYTQRIC 74 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ VHA+A+ +A+E A+G+ VP N I RN+++ + + +H+ HFY ++ D+ D Sbjct: 75 GICSSVHAVAAAFAVEQALGMTVPSNGLIQRNLIMGSDFLQNHIRHFYLMSMPDYFKGPD 134 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + F G ++ Sbjct: 135 ------------------------------------------IPPFTPHLEGDIRF--NT 150 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E N HY +A++ R+ VFGGK PH + IV G G V+ ++ Sbjct: 151 EENQRMTEHYFKAVEISRDAHAAFGVFGGKAPHGHGIVPG----------GCTMHVDADK 200 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +N + + + +FINN MIPD + + + +G G + LS G F + Sbjct: 201 INRFRGYLIQILEFINNFMIPDMEFLVERYPEYVHLGKG--NGNFLSVGGFTQP-----D 253 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 L P G V+ D + + E V AWY+ HP+ G T+P Sbjct: 254 GGTLFPHGVVLED------KHQPFDDRLILEEVTTAWYK---PTPPAHPWQGTTEP---- 300 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 N+ + Y+W+KAPR++G+A+EVGPLAR +IA K Sbjct: 301 -----------DKNQPQGYTWVKAPRYQGHALEVGPLARAVIAKEK-------------- 335 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 TLGR R E + A + ++L+ E Sbjct: 336 ------IIGYGTLGRHWSRVMETKKIAEAAMIWLERLV----------PGAETLNTKVQQ 379 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 G+G+ EA RG LGHW I G++ YQ + P+TWN S RD G E ++ Sbjct: 380 ESGMGIGYVEAMRGTLGHWIKIEKGRVKHYQIITPSTWNFSSRDEAGNCSVGELSIRGLT 439 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 + PE E R + SFDPC +CS H++ G +L ++ +R Sbjct: 440 IKHPELK-EAGRVIRSFDPCFSCSVHLID--GEQLRTLDIR 477 >UniRef50_C8R0I5 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R0I5_9DELT Length = 522 Score = 365 bits (935), Expect = 4e-99, Method: Composition-based stats. Identities = 174/576 (30%), Positives = 274/576 (47%), Gaps = 59/576 (10%) Query: 12 INNAG--RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 +N +G +R+ +DP++R+EGH++ E + D VIT A + G +FRGLE L G D R A Sbjct: 1 MNESGTSKRITIDPLSRVEGHLKIETRVED-GVITQARAAGLLFRGLEKALIGYDARVAQ 59 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 +R+CGVC HA A+ A+EDA+GI+ N ++RN++ HD L+HFYQL+ + Sbjct: 60 QVTQRVCGVCPYAHAEAAALALEDAMGIRPNANGQLLRNLITGAYLVHDSLLHFYQLSAL 119 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 D+ID+ LA ++ + + + R + G F Y Sbjct: 120 DFIDIEAV----------LAYKGGDPVLAAVRQWVEEEVRSSRIFPG---APFLPRY--R 164 Query: 190 PQYKLPPEAN-LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGA 248 +LP + + L+ +Y ++ K+ A+FGGK PHP I G G Sbjct: 165 HDDQLPGDTDSLLLVRNYFANFTLLADLQKMVAIFGGKAPHPVAIEAG----------GV 214 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 + L ++++ R F+ D ++ + + + G G + + +FP Sbjct: 215 TTRPTLGMLAQYRTLLRRAEAFVLGPYREDIFSVCRAFPHYFQEGRGYGN-----FLSFP 269 Query: 309 DIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDG 368 + G+ + L GGA++NG+ ++ + E +A+YR + Sbjct: 270 FLPEADGD-NHLFAGGALLNGE------HQPLELDAINEDHTYAFYRQQSGTALPP---- 318 Query: 369 ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHK-GDAAT 427 + + ++ + +YSW +APR+RG MEVG AR + +YH+ G+ A Sbjct: 319 --LATSRLTPLDWQEFQREEQRKGGKYSWSRAPRYRGEVMEVGAAARIVNSYHQGGNQAL 376 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 E VD L + ++ S +GR L R A G+L+ + + + Sbjct: 377 KELVDHTNRELGITVADYNSVMGRHLSRYLSAALIIGRLKEQLEMVKDGVLG-------- 428 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIG 546 +E P RGVG TEA RGALGHW DG I Y+ VVP+TWN P+D G+ G Sbjct: 429 --FEEREVPRNARGVGITEASRGALGHWLETDKDGLIKNYELVVPSTWNFGPKDAAGKPG 486 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 A E L+ T+++ PEQPLE R S DPC+ACS H Sbjct: 487 AVEKMLLGTRISNPEQPLEAARIARSADPCIACSVH 522 >UniRef50_O28891 F420-nonreducing hydrogenase (VhtA) n=2 Tax=Archaeoglobaceae RepID=O28891_ARCFU Length = 569 Score = 361 bits (927), Expect = 4e-98, Method: Composition-based stats. Identities = 172/641 (26%), Positives = 245/641 (38%), Gaps = 152/641 (23%) Query: 18 RLVVDPITRIEGHMRCEVNIN-------DQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+V+DP+TRIEGH+R E++ + +V+ A GT+FRG E IL+GRDPRDAW Sbjct: 6 RIVIDPVTRIEGHLRVELSPEKLKTSTGEWDVVKEAYCSGTLFRGWETILRGRDPRDAWI 65 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC HA AS+ AIE A + A +IRN++ + +DH++H Y L G Sbjct: 66 ITQRICGVCPAPHAEASIQAIEAAFNVTPTPVAVLIRNVLHGAYYIYDHIIHSYILLGP- 124 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 EL P P + ++L Sbjct: 125 ----------------ELGVVCKYPPMVPPALGKEGVSKL-------------------- 148 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAV 249 + Y+ AL+ QR+ +I A++GGK PH GGM D + Sbjct: 149 ----------GIGSSYVGALEIQRKANEIVAIWGGKFPHHQSEYPGGMAVRPTEDRIASS 198 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI------GTGLSDKCVLS 303 A E V + DF N ++ +G+ +I G S LS Sbjct: 199 LARMFEIWRWVAETM--VKDFYN--LLEANEKVGEAVSSLLDINFRGLQDVGASTGNFLS 254 Query: 304 YGAFPDIANDFGEKSLLMPG-----GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPN 358 YG FPD N S+L + G ++ +D ++ E+V ++WY + Sbjct: 255 YGLFPDHENYDDWLSVLDSPSKRSSALIHAGAWDG--SSKPLDISKIAEYVRYSWYDNES 312 Query: 359 DQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLI 418 + K D N+ E YSW+KAPR+ G EVGPLAR L Sbjct: 313 G-----------------LNPKDEDAPKPDKNKSEAYSWLKAPRYDGKVYEVGPLARMLN 355 Query: 419 AYHKG--DAATVESVDRMMSALNLPL-SGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 Y + + S + R+ R + K+ + +L + Sbjct: 356 TYGTRWKIPIRNPVTGEDHGYFEYEVLNPKGSVIDRLAARVALTILTSQKVFEWLLELKS 415 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWN 535 + P E G G +APRG L H+ ++D KI YQCVVP+TWN Sbjct: 416 YTNQKVTNYRN--------VPKEGEGFGLWDAPRGGLLHYIKVKDHKIANYQCVVPSTWN 467 Query: 536 ASPRDPKGQIGAYEAALMNTKMAIPEQP-------------------------------- 563 SPRD GQ G E AL T + P Sbjct: 468 LSPRDDFGQPGPVETALEGTWLPNLSVPEICNAIYPEKDVDLSALGLGAMSWGDALAAAL 527 Query: 564 -------LEIL-------------RTLHSFDPCLACSTHVL 584 L I + SFDPC+AC+ HV+ Sbjct: 528 TPLGLAELNIERLNGQIYNTSLTLMVVRSFDPCIACAVHVV 568 >UniRef50_B9L9U9 Periplasmic [NiFeSe] hydrogenase large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L9U9_NAUPA Length = 509 Score = 358 bits (917), Expect = 5e-97, Method: Composition-based stats. Identities = 161/570 (28%), Positives = 265/570 (46%), Gaps = 67/570 (11%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ +DP+TRIEGH++ E I D VI A M+RG+E L+G D A +R CG Sbjct: 2 KVTIDPVTRIEGHLKVETVIEDS-VIKEAKCSADMYRGIEKALRGYDYLTAIQITQRTCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 C HA A+ AIE+A+ I++ N ++RN+++ D+++HFY L+ +D+I++ D Sbjct: 61 CCPYAHAEAAALAIENALQIELNKNGKLLRNMVIGAYKLKDYVLHFYTLSALDFINISDI 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP---QYKL 194 L + F ++ + E +F N + Y Sbjct: 121 LNYN------------------GNDFDMLELKKYVLKEISSKKVFPNPLFSQKYKNAYIK 162 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 + N+ HYL++ + +++ ++ +FG K+ H I G G Sbjct: 163 NKDLNITLINHYLKSFEAMKKMSEMVKIFGSKSTHMVTIEAG----------GVTTRPTA 212 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 ERL S+ + FI + IPD L + + K + +IG G+ + + F + N Sbjct: 213 ERLVKYISLAKESQHFIEHCYIPDVLEVAKRFKEYFKIGKGVDN-----FLTFDTLLNLD 267 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 G S L GG + ++ + ++P + E+ ++A+Y+ + G P + Sbjct: 268 G--SYLFTGGFSKDFEYE-----EGIEPYNIIEYNNYAYYK---ENGGYKPLELTELTPL 317 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKG-DAATVESVDR 433 + K + T +YSW KAPR++G+ +EVGP A + Y +G D + VD+ Sbjct: 318 TFDEFKQNHT---------KYSWSKAPRYKGHVVEVGPAAIVINNYLRGKDEKLISLVDK 368 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 L + + S +GR L RA ++ K+ D LM Sbjct: 369 FNRELGIDIKDYNSVMGRHLSRAIISKLIIDKIIE--DSLMVEEGKLGFIQLKKP----- 421 Query: 494 TWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P+ +G+G TEA RGAL H+ I +G I Y+ +VPTTWN SP+D + GA E+ L Sbjct: 422 --PSNVKGIGLTEATRGALAHFIDIGENGYIRNYEMIVPTTWNISPKDNQNIPGALESML 479 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + T++ P+EI R + S DPCLAC+ H Sbjct: 480 IGTEIRDINNPVEIARIIRSTDPCLACAVH 509 >UniRef50_B8D1R8 Nickel-dependent hydrogenase large subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1R8_HALOH Length = 470 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 144/581 (24%), Positives = 239/581 (41%), Gaps = 114/581 (19%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ P+TR+ G + E+ ++ ++ NA + GTMFRG E I++GR DA +RIC Sbjct: 3 KKITFSPVTRLSGLLSVEIVVDRGKIV-NARTRGTMFRGYEWIMRGRKVTDAVYMTQRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H Y +++ G + +NA +RNIM A + +H+ HFY D++ + + Sbjct: 62 GICSLAHGAVGSYLLDELYGNIISENAQYLRNIMFAADFLQNHIRHFYFFGLPDFVKMPE 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + ++L +L Sbjct: 122 KPPFLGQDLNDL--------------------------------------------RLNR 137 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E N +Y +A+ +E ++ A+FGGK P+ + V G G A ++ Sbjct: 138 EDNRRLVDNYYKAVKAAQESHQLLALFGGKIPNQHSFVHG----------GVTVAPTADK 187 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 +N +++I F+ MIPD I + + + +IG ++S+G FP + Sbjct: 188 INQAKALIESIQQFVQGCMIPDTELISRAYRDYFQIGVT--PLRLISFGLFPFGPQNDDY 245 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 L P G +IN +F +L + ++E V +++Y ++ Sbjct: 246 ---LWPPGVIINNEF------ELPQVEFIEEQVPYSYYEANDEGENVF------------ 284 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 + + E YS+IK ++G E GP AR +I Sbjct: 285 -----NQYPEPAPFKPEAYSYIKTVLYKGQHFETGPYARGVIRGD--------------- 324 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 G ST+ RI+ R+ EA AG ++ + +L P Sbjct: 325 -----YRGRASTMDRIVARSLEALKLAGFIREWLTRL----------EPGPPPLNQNEEP 369 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + R V T A RGAL H A I ++ Y + PTTWN SPRD G G E AL+ T+ Sbjct: 370 VKDRAVATTGAMRGALLHSAIIEGEEVKSYNVITPTTWNFSPRDKNGNPGPVERALIGTE 429 Query: 557 MAIPEQPLEIL-RTLHSFDPCLACSTHVLGDDGSELISVQV 596 + I+ R + SFDPC++C THV DG ++ Sbjct: 430 IPGGAMLETIVGRIIRSFDPCISCGTHVYSIDGKLQKKIEF 470 >UniRef50_Q8KRB9 Uptake Ni/Fe-hydrogenase large subunit (Fragment) n=1 Tax=Photobacterium damselae RepID=Q8KRB9_9GAMM Length = 455 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 172/494 (34%), Positives = 248/494 (50%), Gaps = 45/494 (9%) Query: 102 NANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP- 160 NA IR+++L+TL HDH+VHFY L GMDWIDV+ AL ADP K ++ A S+ P ++ Sbjct: 1 NAKYIRSLILSTLQLHDHIVHFYILHGMDWIDVVSALSADPAKAAQEAMKYSATPMAAGE 60 Query: 161 GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIH 220 G VQ +++ V G LG F N YWG+P YK PE NL+G +HYL+AL+ QR + Sbjct: 61 GELRAVQEKVQGLVNTGNLGPFANAYWGNPTYKFTPEQNLIGLSHYLKALEIQRIAAECM 120 Query: 221 AVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 A++GGKNPHP IV GG+ C ++ + RL + A+F+ D Sbjct: 121 ALWGGKNPHPQSIVVGGVTCVRDMLDPA--------RLQEFKQKFQHVAEFVERAYYADL 172 Query: 280 LAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDL 339 + + ++ G + ++ + +D L G + N D ++ + Sbjct: 173 VMAAKAYATSPDVLGGCNVHTFMAAESILLNPDDH-----LFTDGVIRNCDLSHA---EN 224 Query: 340 VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNI-QQLNEQERYSWI 398 VDP ++E V HAWY Q HP+DG T P P + + +NE +YSW+ Sbjct: 225 VDPSLIEEDVTHAWYDAKQPQ---HPYDGTTIPEKTPFVQRETLMGNIPTINEAGKYSWV 281 Query: 399 KAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHE 458 K+PR+ G +EVGPLA + Y +G+ V+ VD ++ LP + +TLGR R Sbjct: 282 KSPRYNGEPVEVGPLATIAVNYARGNKPVVDVVDEFLTKTGLPAQALFTTLGRTAARMLH 341 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP-TECRGVGFTEAPRGALGHWAA 517 A F+ ++ NL + +P P E +GVG EAP Sbjct: 342 TTVIARHGLETFESMVANLNSDQTT-----YIKPTIDPDKEYKGVGILEAP--------- 387 Query: 518 IRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCL 577 + G P P D G+IG YEA+L+ K+A P +PLEILR +HSFDPC+ Sbjct: 388 LSSG--------CPNNLERWPYDGNGRIGPYEASLVGLKLAEPTKPLEILRIIHSFDPCM 439 Query: 578 ACSTHVLGDDGSEL 591 ACS HV+ G L Sbjct: 440 ACSVHVMDYKGQSL 453 >UniRef50_D2RD72 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RD72_ARCPR Length = 574 Score = 351 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 163/644 (25%), Positives = 247/644 (38%), Gaps = 148/644 (22%) Query: 18 RLVVDPITRIEGHMRCEVNINDQN-------VITNAVSCGTMFRGLEIILQGRDPRDAWA 70 R+ VDPITRIEGH+ + + N V+ A S +FRG EIIL+GRDPRDA+ Sbjct: 3 RVWVDPITRIEGHLGVTMETKEVNTGKMTIDVVDKAYSHTNLFRGFEIILRGRDPRDAFY 62 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +RICGVC H A++ A++ A + A +IRNI+ A + +DHL+H Y L G Sbjct: 63 ITQRICGVCPAPHGEAAIQALDHAYDVTPTPTAVLIRNILQAAYYVYDHLIHTYLLVGP- 121 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 E+ P P + Sbjct: 122 ----------------EIGVVCKYPPMVPPALGKE------------------------- 140 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250 L + Y++ +D QR+ +I A++GGK PH G G Sbjct: 141 -----GIRKLGLGSSYVQCVDIQRKANEIVALWGGKFPHHMCEYPG----------GVTV 185 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI-------------GTGLS 297 +R+ + T ++ +V + D +AI + N+ SE G S Sbjct: 186 KPTGDRIAQTLAKATELWEWCAHVALKDLIAIKERNEIVSERLSELLGIEHRAFADIGAS 245 Query: 298 DKCVLSYGAFPDIANDFGE------KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDH 351 LSYG FPD N + + G + N + + ++ E+V + Sbjct: 246 WGNYLSYGIFPDPENYDDWVKAQDGQPSFRKSAVIYAGSWQN-GELKPFERDKIVEYVKY 304 Query: 352 AWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVG 411 + Y+ ++ G P+D +I ++ Y+W+KAPR+ G EVG Sbjct: 305 SRYK--DEISGMKPWDVEMTN------------DIVWKDKPNAYAWMKAPRYDGKVHEVG 350 Query: 412 PLARTLIAYHKGDAATV--ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 PLAR ++ Y V +S ++ S + R+ R +A A K+ + Sbjct: 351 PLARMIVTYGLRWKFDVTNPITGETVSVDWEVMNPKGSVIDRVASRVVQALLFATKIMEW 410 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 +L + + ++ P E G G EAPRGAL H+ I++ I Y CV Sbjct: 411 AVQLKDYASEYPIVSKDIPDYK--YVPNEGEGWGLWEAPRGALLHYTKIKNKVIANYACV 468 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNT---------------------------------- 555 VP+TWN PRD G G E AL Sbjct: 469 VPSTWNLGPRDDFGNPGPVEKALEGCWLPKNLSVPDVCNALWPEEDVLGMKWGDALAKAI 528 Query: 556 -KMAIPEQPLE-----------ILRTLHSFDPCLACSTHVLGDD 587 + + E LE L + SFDPC+AC H + + Sbjct: 529 APLGLAELNLEPSNGAKYNTSLALAIVRSFDPCIACGVHTIELN 572 >UniRef50_Q2BJK9 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJK9_9GAMM Length = 500 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 151/583 (25%), Positives = 235/583 (40%), Gaps = 89/583 (15%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 RR+ + + R+EG + E+ I ++T+A GTM+RG E IL GR P DA A RI Sbjct: 2 SRRIKLQ-LNRVEGDLEIELEIK-NGIVTDARCIGTMYRGFEQILIGRAPMDALAITPRI 59 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ H ASV A+E I P NA +RNI L + + + D Sbjct: 60 CGICSTAHLYASVLALESVSNIIPPANAIRVRNICLLSEEIQSDCRQTFLMFTPDLCHSS 119 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + D + Q + Q+ ++ + ++ G W H Y +P Sbjct: 120 YSTLNDYQSIVAKFQDMQGEL---------YQDAIRFSRDIIEIVAIFGGQWPHSSYMVP 170 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 + ++ ++ + F K ++ + Sbjct: 171 GGVT--SLPDRRKVINSLAQLQRYTQWFEHK-----------ILGTSLADW--------- 208 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG---TGLSDKCVLSYGAFPDIAN 312 S IT A+ N D+ AI ++ ++G G + ++SYG+ D N Sbjct: 209 ------SRITSLAELNNFTQSSDS-AIAILHRFCRDMGLDSVGSGSEKMISYGSLIDPEN 261 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVD-LVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 +G +N L +D ++ E + +WY + Q RHP G+T Sbjct: 262 PQER--------IRSDGTYNYKLKKHAPLDESKITEDITSSWY-HDESQTARHPMQGLTQ 312 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 P Y+P + E+YSW KAPR+ + ++ GPLA+ +A D ++ + Sbjct: 313 PKYDP--------------DSEKYSWAKAPRYDKDVIQTGPLAQLAVAK---DPLILDML 355 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 + ST R R H + L+ L+ L + E Sbjct: 356 AQ----------NGSSTWTRQFARIHRQASSLIILKDQLSSLLECLDAPTMIHCPLE--- 402 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 + GVG EA RG+LGHW I DGKI +Q + PT WNASPRD Q G E + Sbjct: 403 ------DGEGVGMIEAARGSLGHWLKIEDGKIKNFQVITPTAWNASPRDINQQPGHIEQS 456 Query: 552 LMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 L+ M ++P+EI + S DPCL C+ H+LG V Sbjct: 457 LIGLPMPDLDEPIEIGHVVRSHDPCLVCTVHLLGSGKKHRFGV 499 >UniRef50_C0BHA5 Nickel-dependent hydrogenase large subunit n=2 Tax=Flavobacteria RepID=C0BHA5_9BACT Length = 624 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 153/604 (25%), Positives = 269/604 (44%), Gaps = 62/604 (10%) Query: 17 RRLVVDPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R + DP+TR+ G + ++ ++ + + S T+FRG E+IL+GRDPRDA R Sbjct: 51 RNIDYDPVTRVAGALAFHSVVDLEKKKVLSTNSMATLFRGYEVILKGRDPRDAAYISSRA 110 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC GVHA + AIE A+ IK P ++RNI+LA + +DH +H + LAG D+ + Sbjct: 111 CGVCGGVHATTAALAIEMALEIKPPPLGIVMRNILLAIEYMYDHPLHLFLLAGPDYSE-- 168 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + ++ + + A + + K GY + Sbjct: 169 ELVRETNPELIDKAATTKAKNKDVHGY--------------------------DTVLDIM 202 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM-PCAINIDESGAVGAVNM 254 + N + YLEAL R + + + GGK PHP +V G +N V + + Sbjct: 203 KDLNPLKGKLYLEALTMTRVAREAYVLIGGKYPHPQSVVPGGLSVTVNASMLNEVYSRLI 262 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + + Q + D + + + +P + + TG+ D+ Y A + + + Sbjct: 263 KFFDYSQKVTGIWDDVFDFFLESNPEYAKCGIRPATMMDTGVWDRP-DHYDAKFENCDTW 321 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 GE P G +++G+ +L ++EFV+H++Y + + +G+ Sbjct: 322 GEARWSTP-GVLVDGEVVTTKLTEL--NAGMEEFVEHSYYEKWDGHRFKEDPNGMPLSPN 378 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +P + K + + + ++RYSW AP W ME G R + A + ++ Sbjct: 379 HPWN-KETIPKPGKQSWKDRYSWDTAPTWDRMPMEAGAYTRMYMTAKAQKAPASKFLENT 437 Query: 435 MSALNLPLSGIQ--------------STLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 +++ + + + R RA+ ++A + M +KNG Sbjct: 438 GTSMKIHVPKHLLPEKTLEWKIPEHWNAFERNRARAYCIPYSAMVAMENWMMAMDLIKNG 497 Query: 481 NLATASTEKWEPATWPTECR--GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASP 538 + + P P + G G A RG L H I +G I+ YQ + P+T NA+P Sbjct: 498 DTKVSV-----PYEIPKKGTHIGFGAWGAGRGFLTHHLIIENGLIENYQIITPSTLNAAP 552 Query: 539 RDPKGQIGAYEAALMNTKM------AIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELI 592 R P G++G YE A++NT + + ++ILR + SFDPC+ C+TH++ D ++ Sbjct: 553 RTPWGEMGPYEEAVLNTPILEKFDKPEDYKGIDILRAIRSFDPCMPCTTHIMAKDSDHMV 612 Query: 593 SVQV 596 + +V Sbjct: 613 TREV 616 >UniRef50_C0GSI8 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSI8_9DELT Length = 518 Score = 348 bits (891), Expect = 5e-94, Method: Composition-based stats. Identities = 150/589 (25%), Positives = 231/589 (39%), Gaps = 82/589 (13%) Query: 12 INNAGRRLVVD-PITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 +++ R ++ P+ R+EG + + I D IT A S GTM+RG E ++ GR D Sbjct: 1 MSSKSVRTSLNIPLNRVEGDLEIQAAIED-GCITEARSSGTMYRGFENMMTGRGTLDGLV 59 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 RICG+C+ H A+V A+ED G PDNA +RN+ L + + +D Sbjct: 60 ITPRICGICSLSHLTAAVEALEDISGTTPPDNARRLRNLALMVEMLQSDIRQSILMFMVD 119 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 + + + A +S L + + +S RL + V G W H Sbjct: 120 FTN--EGAYASHPLSSLLMERYAPLSGTSAIQSIQETRRLLEVVA------IIGGQWPHT 171 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250 + +P L I++ + KN V Sbjct: 172 SFMVPGGVTSSLGTPELLRCCM---IIENFQSWYEKN---------------------VL 207 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG---TGLSDKCVLSYGA- 306 ++ R + V S D++ + +G F + + G G L YG Sbjct: 208 GCSISRWHQVDS-AQAMLDWLEEIESHRQGDLGLFLRLAYDAGLDTMGQGPDGFLCYGGL 266 Query: 307 -FPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHP 365 P+ G++ +P G +G + DP + E + Y + V HP Sbjct: 267 PLPEHTEVKGQQGQFIPAGFARHG------SIQAFDPANIAEDISQCPYSQKHTSV--HP 318 Query: 366 FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDA 425 +D T+P + YSWIKAPR+ G+A+E GPLA L+ + D Sbjct: 319 WDSSTNP-------------DPYAPRENSYSWIKAPRYNGHAVETGPLAEMLV---RRDP 362 Query: 426 ATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATA 485 + + R S L R L R + + +L +N Sbjct: 363 LFTDLIQR----------QGSSVLSRQLARLTRPARLIPAMLAWLRELSSN--------P 404 Query: 486 STEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQI 545 + + + +G G +A RG LGHW I D KI+ YQ + P+TWN SPRD Sbjct: 405 QGKFYHRVKKIPDGQGAGLIQAVRGGLGHWVQIVDQKIEHYQIITPSTWNGSPRDGDNNP 464 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 GA+E AL T + PE P+E + SFDPCL C+ H L + + V Sbjct: 465 GAWEKALEGTFIKNPENPVEAGHVVRSFDPCLVCAVHSLHRGRKKGVLV 513 >UniRef50_D1Z2T5 F420-non-reducing hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z2T5_METPS Length = 579 Score = 345 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 168/598 (28%), Positives = 251/598 (41%), Gaps = 57/598 (9%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+ +DP+TR+ +R + D + T+A S G ++RGLE +L GR P DA F +RICG Sbjct: 2 RITIDPVTRLSSGLRVTAELTDGAI-TSASSSGMIYRGLEQMLAGRSPEDAPYFTQRICG 60 Query: 78 VCTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 +C+ HA ASV AIE A G +P +A ++RNI+ W +H+ H Y D D Sbjct: 61 MCSASHATASVNAIESAAGAAGLIPRDALLVRNILNGLGWLKNHVEHLYMAFMPDLAD-- 118 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYF--FDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + D +S L L K L+ E G+ G Sbjct: 119 -PVYGDALNSSSLGNLLWQELKERYAVSGGQAYGEALRCIREIGRAEGVLGGRSPCSPAI 177 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGA----V 249 +P + + AL+ ++ F K +G + ++G + Sbjct: 178 VPGGVTVRPARGDIGALET---CLENIDGFLQKRLVGAMTIGEWLANTHDQDAGFGYDYI 234 Query: 250 GAVNMERLNLVQSI--ITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKC--VLSYG 305 + M L+ + + F + + D L++ + G L D+ LSYG Sbjct: 235 EHLPMGDLSASKGWGDLPLFMMFFSRMFARDVLSLPAYIGLDDAGGYPLDDQLIGFLSYG 294 Query: 306 AFPDIANDFG----------EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR 355 +F + ++ G + + MP G G N L D VDP + E V ++Y Sbjct: 295 SFYRVRDESGRLKDGYGTVEDGAFEMPAGFTPGGMQNIYLAADRVDPNLIVEHVAASFYD 354 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLAR 415 Y +++ P DG T P ++ + RYS+IKAPR+ EVGPLAR Sbjct: 355 YSEERLSEAPLDGETVPAGRASSIEL---------DGARYSFIKAPRYGRVPCEVGPLAR 405 Query: 416 TLIAYHKG-DAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 + + A R MS N P++ S R + R E + L + D L Sbjct: 406 QINSRESLIIDAMRRLYSRNMSVTNYPMA---SVYTRTMARMQETLLISRMLHEWLDDL- 461 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTT 533 +++ + P + G G EAPRGALGHW I +D KI YQ V PTT Sbjct: 462 ------HVSDERQKYCVPVSVKPNRTGSGLIEAPRGALGHWLRIGKDQKISNYQVVAPTT 515 Query: 534 WNASPRDPKGQIGAYEAALMNTKMA-------IPEQPLEILRTLHSFDPCLACSTHVL 584 WNASPR + + G E AL+ P+ I + SFDPC AC+ H + Sbjct: 516 WNASPRCSEQKSGPMELALLGCSTTPSGYLPGSESNPVSIYHVIRSFDPCAACAVHTV 573 >UniRef50_C1SPM3 Ni,Fe-hydrogenase I large subunit n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SPM3_9BACT Length = 479 Score = 344 bits (882), Expect = 5e-93, Method: Composition-based stats. Identities = 149/569 (26%), Positives = 237/569 (41%), Gaps = 93/569 (16%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + L VDP+TRIEGHM E + ++ G M+RG E +L GR P D+ +RI Sbjct: 2 SKLLTVDPLTRIEGHMSVETAVE-SGKVSEVRIAGNMYRGFERMLLGRHPVDSARIAQRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CGVC VH ++SV A+E GI P N I+R+++L DH++HFY L D++++ Sbjct: 61 CGVCHEVHGVSSVMALEQIFGITPPANGIILRDMILGLHIVTDHILHFYNLCLPDYVNLS 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A + + +++S W SS F +QNR Y Sbjct: 121 SAAGYNGKDRD--LRNISDWLSSSGTAF--MQNRT------------------EGNYIKD 158 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 ++ +Y EA+ + + A+ G K P + ++ G G + + Sbjct: 159 KDSARRFALNYFEAIKIRSQAAGGLAILGAKVPFIHALMPG----------GITTEITTD 208 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L + TA+F+++ +PD + I Q + +IG +Y F + Sbjct: 209 ALMKYYRALDATAEFVSSSFMPDVIEIAQRFPEYFDIGE--------AYNTFYAHQSFNS 260 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 K L G + +G+ D +V+E + ++Y+ Sbjct: 261 AKGDLFTQGVIADGEKV------DFDYNKVKELIGSSYYKADGSP--------------- 299 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 N + YSWIKAPR+ G +E GP+AR + D + R+ Sbjct: 300 ------------DENAEGAYSWIKAPRYDGIPLETGPIARAAVG---NDEEFKSLLRRLG 344 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 S S +GR+L RAHE+ L ++ + + Sbjct: 345 QK-----SIKSSVMGRLLARAHESVMLCNYLYGRTEEYVIG--------KPAIRAVDLQA 391 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 P G+GF+ A RGAL H GK+ Y+ +VP+TWN P G++G E A++ T Sbjct: 392 PVSGEGIGFSVAARGALVHHITAYKGKVTDYKMIVPSTWNFGP-TVDGRLGVAEKAVLGT 450 Query: 556 KMAIPEQ--PLEILRTLHSFDPCLACSTH 582 + +E+ R + SFDPC ACS H Sbjct: 451 PVNYGGVSGSIEVGRVIRSFDPCTACSIH 479 >UniRef50_C8S960 Nickel-dependent hydrogenase large subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S960_FERPL Length = 521 Score = 342 bits (877), Expect = 2e-92, Method: Composition-based stats. Identities = 164/593 (27%), Positives = 250/593 (42%), Gaps = 91/593 (15%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 +V+DP+TRIEGH + + D V+ +A S TMFRG E I+ GRDP+DA ++RICGV Sbjct: 3 VVIDPVTRIEGHHGVRLKVED-GVVKDAHSLATMFRGFERIVIGRDPKDAPILLQRICGV 61 Query: 79 CTGVHALASVYAIEDAIGIK------VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 C H LAS++AIE+A + +P+ A ++RN + A + DH V Y L G D+ Sbjct: 62 CHNDHRLASLFAIENAAKLTNEWGAGLPEPAVLLRNAIAALQFVFDHPVWAYALTGPDYC 121 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 D + K+ F + R K Sbjct: 122 D--------------------AIHKTGLVRFDPIVGRGVK-------------------- 141 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGA 251 EA+ Q+ + + GGK PH I GG+ I+ + + + Sbjct: 142 ---------------EAVLAQKRLHQAMTYIGGKVPHIMTPIPGGVSLEIDANIISKLIS 186 Query: 252 VNMERLNLVQ-----SIITRTADFINNVMIPDA---LAIGQFNKPW-SEIGTGLSDKCVL 302 + ++ A + +I D L G P E+G GL D L Sbjct: 187 IVLDVKKWALGVGLGKTALEHARDVAGYVIDDVSKKLEKGVVEPPNDPEVGKGLYDLVSL 246 Query: 303 SYGAFPDIANDFGEKSL-LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQV 361 D GE++ ++ G + + + P + +++++F YR + V Sbjct: 247 ILVMANLGLKDMGERTPTMLAYGFLADPNGELFFPSGFFNGKELEKFD----YRNIGEDV 302 Query: 362 GRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYH 421 +D Y + + I + + Y+W KAPR++G EVGPLAR + + Sbjct: 303 KYSYYDDEAGGSYVG--EEDTRKLIPKYGKAGAYTWAKAPRYKGMPAEVGPLARMVAKGY 360 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 + + +D + + L R + R E L+ +L Sbjct: 361 RDGWEVGDPLD--LRKNLAGGRTASNALARNIARIQEELVLIDYLENLLLELKDYAGKKA 418 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 + GVG EAPRGALGHW IR GKI+ YQ + PTTWN SPRD Sbjct: 419 YVKYEIN---------DGDGVGLREAPRGALGHWVKIRGGKIENYQVIAPTTWNVSPRDS 469 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 K Q+G E AL+ T ++ +Q ++R +HSFD CLAC+ HV + S I + Sbjct: 470 KDQMGPLEEALIGTPISESDQ-WNVIRVIHSFDLCLACTVHVYSEKSSWTIKI 521 >UniRef50_A9WK95 Nickel-dependent hydrogenase large subunit n=12 Tax=Bacteria RepID=A9WK95_CHLAA Length = 545 Score = 342 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 146/589 (24%), Positives = 222/589 (37%), Gaps = 66/589 (11%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 GR L + P+ R+EG + V I D V+T+A + +MFRG EIIL+G+DP+ R Sbjct: 12 TGRDLRISPLGRVEGDLDLRVTIRD-GVVTSAWTEASMFRGFEIILKGKDPQAGLIVTPR 70 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICG+C G H +VYA++ A ++P NA +IRNI A FY L +D + Sbjct: 71 ICGICGGSHLTKAVYALDTAWQTELPPNATLIRNIAQACETLQSIPRWFYALFAIDLTNK 130 Query: 135 LDA-LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 A L A + + + F G W H + Sbjct: 131 KYAHLPEYDEAVRRFAPFVGTSYEHGVTLSNKPVEIYAIF----------GGQWPHSSFM 180 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 +P + + I + + W+ + + V Sbjct: 181 IPGGVMCAPTLADV------TRAIAILEYWKDEWLEKKWLGCSVDRWLQNKSWADVMEWM 234 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 E D +F G L+ G + Sbjct: 235 HEN---------------ERHYNSDCGFFLRFAMAAGLDKYGAGWNNYLATGTYFHPELY 279 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + D QV+E V H++Y HPF+G T+P Sbjct: 280 ARPTIEGRNAALIARSGVYVNGQFYDFDQAQVREDVSHSFY---EGNHVLHPFEGRTEP- 335 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRW-----RGNAMEVGPLARTLIAYHKGDAATV 428 + + Q +Y+W KAPR+ + +E GPLAR +IA G Sbjct: 336 ----------IDPEVGRRQGKYTWAKAPRYLIPGVGSHPLEAGPLARQVIA---GRPGAA 382 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 + D L+ + S L R++ R HEA ++ + D++ + K Sbjct: 383 DWQDYDPLFLDAVTTVGPSVLVRVMARMHEAPKYYKLVRKWLDQINLHEK---------F 433 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 +P P E RG G TEA RG+L W ++DGKI+ YQ + PT WN PRD + G Sbjct: 434 YIKPKELP-EGRGFGSTEAARGSLSDWIVLKDGKIENYQVITPTAWNIGPRDSREVNGPM 492 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD-GSELISVQV 596 E A + +A P P+E+ S+D CL C+ H + G EL ++ Sbjct: 493 EQAFLGAPIADPNDPVELGHVARSYDSCLVCTVHAYDEKTGKELARFRI 541 >UniRef50_A7NQJ8 Nickel-dependent hydrogenase large subunit n=33 Tax=Bacteria RepID=A7NQJ8_ROSCS Length = 540 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 141/599 (23%), Positives = 214/599 (35%), Gaps = 73/599 (12%) Query: 8 QGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRD 67 T+N L V P+ R+EG + V + D V+T A + MFRG E+IL+G+DP+ Sbjct: 1 MTATVNTKRMDLHVSPLGRVEGDLDLRVTVED-GVVTQAWTEAGMFRGFEMILKGKDPQA 59 Query: 68 AWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 RICG+C G H S +A++ A ++P NA ++RNI A FY L Sbjct: 60 GLIVTPRICGICGGSHLYKSAFALDVAWRTELPPNALLVRNIAQACETLQSVPRWFYALF 119 Query: 128 GMDWIDVLDA-LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY 186 +D + A K A + + F G Sbjct: 120 AIDLTNRRYAKAKGYDEAVRRFAPLVGESYERGVTLSAKPVEIYAIF----------GGQ 169 Query: 187 WGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDES 246 W H + +P + + I F Sbjct: 170 WPHSSFMIPGGVMCGPTLSDV------TRSIAILEEFRHNW-----------------LE 206 Query: 247 GAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGT---GLSDKCVLS 303 +++R ++ +++ +G F + EIG G L+ Sbjct: 207 SRFLGCSVDRWLEIK-TWEDVLAWVDENESQHNSDLGFFLRFGLEIGLDRFGAGCGNYLA 265 Query: 304 YGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGR 363 G + + D +V+E ++Y+ Sbjct: 266 MGTYLHHEKYNRPTIEGRNAALIQRSGIYAGGKHYEFDQARVREDHTFSFYQ---GSGLL 322 Query: 364 HPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-----GNAMEVGPLARTLI 418 HPF+G T+P + Q +Y+W KAPR+ +EVGPLAR ++ Sbjct: 323 HPFEGRTEP-----------IDPADAKRQGKYTWAKAPRYDVDGLGSVPLEVGPLARQVV 371 Query: 419 AYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLK 478 A G+ E D ++ S L R+L R HE ++ + Sbjct: 372 AGKPGE----EWQDVDPLFSDIIAKKGPSVLVRVLARLHEEAKLYKNVREWL-------- 419 Query: 479 NGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASP 538 G L +P RG G TEA RGAL W + +GKI YQ V PT WN P Sbjct: 420 -GELDLHDRFYIKP-VEHEFGRGFGATEAARGALADWIVLENGKIANYQVVTPTAWNIGP 477 Query: 539 RDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD-GSELISVQV 596 RD + G E A + T + P P+E+ SFD CL C+ H G E+ ++ Sbjct: 478 RDSRNVNGPMEQAYLGTTIHDPGDPVELGHVARSFDSCLVCTVHAYDSKTGKEIGVYRI 536 >UniRef50_B1Y6B1 Nickel-dependent hydrogenase large subunit n=3 Tax=Proteobacteria RepID=B1Y6B1_LEPCP Length = 509 Score = 341 bits (874), Expect = 4e-92, Method: Composition-based stats. Identities = 149/567 (26%), Positives = 224/567 (39%), Gaps = 79/567 (13%) Query: 24 ITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVH 83 + R+EG + +V + D V+ A + GTM+RG E IL GR PRDA R+CG+C H Sbjct: 10 LNRVEGDLSIQVTLED-GVVVAARTAGTMYRGFEQILLGRTPRDAMVITPRVCGICGTAH 68 Query: 84 ALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPR 143 A V A+E A VP NA IRN+ L + L + D A Sbjct: 69 LYAGVLALEQAWNTPVPPNATRIRNLCLIAEGLQNDLRQTFLFFAPDLCHPRYA---GDV 125 Query: 144 KTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGF 203 + ++ + + R+ + V G W H Y LP Sbjct: 126 LFEPMMRAFEPFKGDIYRETLAMTRRVLEIVAH------FGGQWPHSSYMLPGGVVTPPD 179 Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 L A R ++ + + +DE A+G+ Sbjct: 180 TRRLIAC---RSVIDQLQRWYEQRI----------IGAGLDEWMALGS------------ 214 Query: 264 ITRTADFINNVMIPDALAIGQFNKPWSEIGT---GLSDKCVLSYGAFPDIA-NDFGEKSL 319 +++ P A+G + G G+ ++S+GA+ D + Sbjct: 215 ADALFEWLE-RPGPANAALGLITRFLRSQGMHRLGIGTPHMISFGAWCDPQRWGPPYDAH 273 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 L+PGG ++ V +DP V E V H+W++ GRHP++G T P Y P Sbjct: 274 LLPGGFY----DSDSGQVQPLDPSLVTEHVRHSWFKPYEG--GRHPYEGETVPDYQP--- 324 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 + +RYSW KAPR+ G ++ GPLA LI + Sbjct: 325 -----------DSDRYSWAKAPRYGGRVVQTGPLAELLIGGDAL-------------VRD 360 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 L + R R + + + D+L +L + + + Sbjct: 361 LHATEGAGAWLRQFSRVRRIGFELRQARRMLDELGAHLGEPHFVPPAP------GTEVDG 414 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 +G G A RGALGHW I +G I YQ V PT WNASPRD G G +E++L+ K+ Sbjct: 415 QGCGLVMAARGALGHWVRIENGVIQKYQIVTPTAWNASPRDSDGVPGHWESSLVGLKVQD 474 Query: 560 PEQPLEILRTLHSFDPCLACSTHVLGD 586 P+ P+EI + S DPCL C+ H + Sbjct: 475 PDDPIEIGHLIRSHDPCLVCTVHFVDS 501 >UniRef50_Q6LB90 HoxV n=3 Tax=Alphaproteobacteria RepID=Q6LB90_OLICO Length = 484 Score = 341 bits (873), Expect = 6e-92, Method: Composition-based stats. Identities = 153/572 (26%), Positives = 228/572 (39%), Gaps = 89/572 (15%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N RR++ P R+EG + ++IN + A +FRG E IL+G+DPRDA Sbjct: 1 MNEETRRIIAGPFNRVEGDLEIRLDINGSA-VRAAYVNSPLFRGFEQILEGKDPRDALTI 59 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 V RICG+C+ ++A+ +A+ A GI P N I I+ A DHL HF+ D+ Sbjct: 60 VPRICGICSVSQSMAAAHALAAAEGIAPPPNGERIAAIIHAAENIADHLTHFHIFFMADF 119 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 + A ++ SE ++ + VQ+ + + G W H Sbjct: 120 ARAIYAGESWYGMASEQFRAKNGS---------SVQDAMNARASLLHIMGLLAGKWPHTL 170 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 P A QR+ V++ A+ +WI + A ++ A+ + Sbjct: 171 SVQPGGATKAPD---------QRDRVRLLAII---RQFKDWIEKSI-FAAPVERILAIDS 217 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 + E L + + + I D L +G GL K +SYGA+P Sbjct: 218 L--ESLRAYHAEAPQHGSLRLFLTICDTLELGS---------MGLGPKRFMSYGAYPM-- 264 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 + L+P G +NG VD + E + AW + HPF+G T Sbjct: 265 ----DGRHLLPPGIWLNGKIMP------VDTGLIAEDLTSAWM----NGETAHPFEGRTL 310 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 P + YSW KAPR G +EVG AR LIA H Sbjct: 311 PDETMAN---------------GYSWCKAPRMAGQTVEVGAFARMLIADHPL-------- 347 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWE 491 A L G + R++ R E ++ + ++ Sbjct: 348 -----AQGLLQDGAANVRARVVGRLFEIASTVLAMEQWAADIV----------PGEPAMV 392 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAA 551 P + G TEA RG+LGHW + G+I YQ + PTTWN SPRD G G E A Sbjct: 393 HGRIPQSAKVEGLTEAARGSLGHWLVVEKGRIASYQIIAPTTWNFSPRDQAGTPGPVEQA 452 Query: 552 LMNTKMAI-PEQPLEILRTLHSFDPCLACSTH 582 L + E P+ + + SFDPC+ C+ H Sbjct: 453 LRGAPVRHGEETPVSVQHIVRSFDPCMVCTVH 484 >UniRef50_A4YF93 Nickel-dependent hydrogenase, large subunit n=1 Tax=Metallosphaera sedula DSM 5348 RepID=A4YF93_METS5 Length = 513 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 134/582 (23%), Positives = 222/582 (38%), Gaps = 78/582 (13%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V+ P+ R+EG + +V + V+ A +FRG+EIIL+G+ P D+ RICG+C Sbjct: 5 VISPLNRVEGDLDLKVVFEGKKVVK-AFPMSRLFRGIEIILKGKFPMDSLVITPRICGIC 63 Query: 80 TGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALK 139 G H L++ A+E A G VP NA +RN+M + + H Y + +D +++ Sbjct: 64 GGSHLLSAAKALEMAYGASVPPNAVRLRNVMTLAEMGQNDVRHTYLMFLIDTVNLKYEKM 123 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 R + W + K++ E + G W H +P Sbjct: 124 GFYRDI------VLRWAPYLGQSYKQAVAWSKRYTE---IYAIFGGQWPHGSAMVPGGVT 174 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 ++ + + + + I A F K + +++ Sbjct: 175 TDPLSN--DIIKAKSILASITAEFLEK---------------------VILGGPLDQFLQ 211 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 V+S + + D I + G + ++SYG + S Sbjct: 212 VKSK-RDLDQWAKDYPNGDISKIWNYGLEMKWDKIGSGSQYLMSYGHVTL-PEHYDPASH 269 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ-VGRHPFDGITDPWYNPGD 378 + + + + + EFV H++Y Y VG HP++G T P Sbjct: 270 VEKKRFREGLLDLRTREIHQIKEENIVEFVSHSFYSYEQGDKVGLHPYNGETTPL----- 324 Query: 379 VKGSDTNIQQLNEQERYSWIKAPRWR-GNAM---EVGPLARTLIAYHKGDAATVESVDRM 434 + +Y++ KA R++ G EVG LA ++A GD + V R+ Sbjct: 325 ---------PPESKGKYTFTKAFRYKLGGKYVAPEVGALAMMVVA---GDPLMTDLVYRI 372 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + S L R + R ++ + + Sbjct: 373 GT----------SVLAREIARIVRLARIHEIMREELESY----------EYDEITYIKPE 412 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 RG G EA RG+LGHW I +GKI YQ V PT N P DP G AL Sbjct: 413 EKLSGRGYGLVEASRGSLGHWLVIEEGKIKNYQVVTPTQINMGPEDPFGNPSHLSIALQG 472 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 T++ P P+E+ + S D C+ C+ HVL G E++S+++ Sbjct: 473 TEVENPNNPIEVAHIVRSHDACMVCNVHVLD-GGKEILSMRL 513 >UniRef50_Q21QY4 Hydrogen:quinone oxidoreductase n=40 Tax=Proteobacteria RepID=Q21QY4_RHOFD Length = 496 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 149/571 (26%), Positives = 225/571 (39%), Gaps = 83/571 (14%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 RL++ P R+EG + ++ + D +T A MFRG E+IL GRDP DA + RICG Sbjct: 3 RLILGPFNRVEGDLEVQLEVTDGR-VTEARVNAPMFRGFELILNGRDPMDALSIAPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++A+ A+ DA G+ VP N N+MLA DHL HFY D+ + A Sbjct: 62 ICSVSQSVAAAKALADASGVVVPPNGMHAINLMLACENFADHLTHFYLFFMPDFTRAVYA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + R+ +L+ + ++ E L G W H LP Sbjct: 122 ARPWFREAERRFAALAGSTSNGGLRSRAALAARARWFE---LIGTLGGKWPHTGAVLPGG 178 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + E + + ++ A ++E + ++ + Sbjct: 179 TSRAIETT--ERIRLLARVREMRAFLEQ-----------TLFGTALEEVATLDSLAALQR 225 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++ + A F+ D Q G LSYGA+ Sbjct: 226 WRARAAGSDMALFL------DLAEATQLTNL------GPGPGRYLSYGAY---------- 263 Query: 318 SLLMPGGAVINGDFNNVLPVDL-VDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + G A+ G ++ L L +DP Q+ E HAWY HP G+T P Sbjct: 264 ARFEGGHALARGVWDAALQQGLPLDPTQISEDARHAWYAESTSAQALHPMAGLTQPE--- 320 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 ++ YSW KAPR +E G +AR L+ G +V Sbjct: 321 ------------PDKPGAYSWNKAPRLGSQVVETGAIARQLV---DGQPLIRAAV----- 360 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 L+ + R+L R E ++ + L P Sbjct: 361 -----LAHGGTVYTRVLARLLEMARILPLMEQWLLAL----------QPHAPFHAVQAQP 405 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 + +G+G TEA RGALGHW I +G+I YQ V PT+WN SPRD G GA EAAL+ + Sbjct: 406 EQAQGIGLTEAARGALGHWLRIENGRIAHYQIVAPTSWNFSPRDAAGTPGALEAALVGAR 465 Query: 557 MAIP-----EQPLEILRTLHSFDPCLACSTH 582 + Q + + + SFDPC+ C+ H Sbjct: 466 LDNAIEGAGGQSVAVQHIVRSFDPCMVCTVH 496 >UniRef50_Q2W8A7 Ni,Fe-hydrogenase I large subunit n=2 Tax=Proteobacteria RepID=Q2W8A7_MAGSA Length = 512 Score = 329 bits (842), Expect = 2e-88, Method: Composition-based stats. Identities = 151/586 (25%), Positives = 235/586 (40%), Gaps = 79/586 (13%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 A R+++ P+ R+EG + + I D V+ A S GTMFRG E +L GR D Sbjct: 1 MAVRKILDVPVNRVEGDLELRLEIADGMVVD-AWSAGTMFRGFERLLIGRGALDGLVVTP 59 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C+ H + + A++ G KVPDN +RN+ L + + +D+ + Sbjct: 60 RICGICSTTHLMTAAKALDAVAGAKVPDNGVRLRNLALMAEHVQSDVRQGILMFLVDFAN 119 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 R +++ + + + K VE + G W H + Sbjct: 120 PAY------RAQPLYDEAVRRYAPLAGEAVAEAVRETKHVVE---IIAIIGGQWPHSSFM 170 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 +P L E L + + + + + +D AV ++ Sbjct: 171 VPGG--LSYAPPVAELLQCRHVLDGFRGWYERRILGCS-----------LDRWRAVDSLE 217 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG---TGLSDKCVLSYGAFPDI 310 L L +S R +D +G + IG G LS G+ Sbjct: 218 ALDLWLEESAAHRDSD------------VGFLLRFGRTIGLDRLGGGHGNFLSCGSLDLP 265 Query: 311 ANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGIT 370 A GG ++ F V+ DP + E V +WY GRHP +G T Sbjct: 266 AETAARGV----GGHLVPSGFARGAVVEGFDPAAIAEHVAASWYAAYEG--GRHPAEGET 319 Query: 371 DPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 +P+ + E RYSW+KA R+ G E GP A ++A GD + Sbjct: 320 EPYASG-------------EEGRRYSWVKAARYLGTPAETGPFAERIVA---GDPLFTDL 363 Query: 431 VDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 + R + L R L R + + +++ + + A Sbjct: 364 LRR----------QGPNALARELARLTRPATLLPAMALWLGEVIASGGHDIYADPGPIP- 412 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 + G+G +A RGALGHW AI+DG+I+ YQ + PT WN SPRD G G +E Sbjct: 413 -------DGAGIGMIQAARGALGHWIAIKDGRIERYQIITPTVWNGSPRDSGGVRGPWEE 465 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 AL+ T +A + P+E+ + SFDPCL CS H + G L V++ Sbjct: 466 ALIGTPVADADNPVEVGHVIRSFDPCLVCSVHTVR-KGRSLGRVRL 510 >UniRef50_A2BMI2 Periplasmic hydrogenase large subunit n=1 Tax=Hyperthermus butylicus DSM 5456 RepID=A2BMI2_HYPBU Length = 641 Score = 322 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 152/667 (22%), Positives = 235/667 (35%), Gaps = 117/667 (17%) Query: 10 YTINNAGRRLVVDPITRIEGHMRCEVNINDQNVI--TNAVSCGTMFRGLEIILQGRDPRD 67 T + R+ +DPITRIEGH+ ++++ + A + TMFRG EI GR P D Sbjct: 1 MTRTSRTIRIHIDPITRIEGHLGLRLHVDAETRKPTGEAWTFVTMFRGFEIFSIGRPPED 60 Query: 68 AWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLAT-LWCHDHLVHFYQL 126 RICGVC HA ASV A++ A G+ ++RN+ A +DH + L Sbjct: 61 LPHVTSRICGVCGASHANASVLAVDMAYGVSPKPMGVVLRNMAFAMTDHIYDHSIILGML 120 Query: 127 AGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY 186 G D+ S+ S+ K D+ Sbjct: 121 EGPDY---------SAAIVSKFTPSVYDHAKKVYAEHRDIHGFT---------------- 155 Query: 187 WGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDES 246 + N + + A+ FQR + + G++ HP+ ++ G D Sbjct: 156 ---TIADIMEALNPLTGKVWQYAVRFQRLAREAGVLIYGRHSHPSTLIPGGISTDISDAE 212 Query: 247 GAVGAVNMERL------NLVQSIITRTADFINN--------VMIPDALAIGQFNKPWSEI 292 + A + ++ F + L+ ++P Sbjct: 213 NLLLAYTTRLIKLTAWVKWFYALWEDLLSFFEKEVTLPGGLPYSCNGLSYAYTSEPSECP 272 Query: 293 GTGLSDKCVLSYGAFPDI-----------------ANDFGEKSLLMPGGAVINGDFNNVL 335 G + V S G F D A D L+ G VI G+ + Sbjct: 273 GMKTTVLAVTSSGIFDDPEAYGEDMPQYDPVEFYKAIDKAAIKRLLKPGIVIRGELVSTS 332 Query: 336 PVDLVDPQQVQEFVDHAWYRYPN--------DQVGRHPFDGITDPWYNPGD-VKGSDTNI 386 + + + E V+ A+Y + D G G D Y+P + V Sbjct: 333 LKEY--QRSIMEHVERAFYEDWDKPRWYREQDPEGSPLLHGKYDAKYHPWNKVTIPKLEG 390 Query: 387 QQLNEQERYSWIKAPR--WRGN---AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLP 441 + +N +Y+W R W+ EVGP AR LI + V+ D A Sbjct: 391 KAINWSGKYTWATHVRLVWKDGSILPFEVGPYARLLITSMHNYSVNVDGADAWFKAGGRE 450 Query: 442 LS--------------------------GIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 ++ I +T+ R+ RA + + Sbjct: 451 ITVHLPRACTDELPGSVCEPMEFKWKVPPISTTIYRLWARAFNLLLDVVGAWKGVSQYRS 510 Query: 476 NLKNGNLATASTEKWEPATWPTE-CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTW 534 L TE P P G GFTEAPRG + HW +GK+ Q PTT Sbjct: 511 LL-----DKRYTETSRPWKVPRTITFGFGFTEAPRGTVRHWVVQENGKVLNVQIHAPTTG 565 Query: 535 NASPRDPKGQIGAYEAALMNTKMAIPEQP-----LEILRTLHSFDPCLACSTH-VLGDDG 588 N SP D G +E + +N+ + P L+ +R++ SFDPCLAC+ H DG Sbjct: 566 NVSPHDRFGY-SPFEQSALNSWVTEELPPEEWQGLDFVRSIRSFDPCLACAVHLAFRKDG 624 Query: 589 SELISVQ 595 + +V+ Sbjct: 625 KTVKTVE 631 >UniRef50_Q0W5V6 F420-nonreducing hydrogenase (Membrane-bound), large subunit n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W5V6_UNCMA Length = 574 Score = 316 bits (810), Expect = 1e-84, Method: Composition-based stats. Identities = 147/620 (23%), Positives = 237/620 (38%), Gaps = 119/620 (19%) Query: 35 VNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDA 94 + + D +V+ A GT +RG E ++ GRDP DA F +R+CG+C+ HA A+ A+E Sbjct: 1 MEMKDGSVVD-ARCSGTTYRGFEQMMIGRDPMDAVYFTQRVCGMCSTPHATAAAGAVESL 59 Query: 95 IGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSL 152 G +P +A ++RNI+ W H+ + Y D D + D + S++ +L Sbjct: 60 AGATGQIPKDALLVRNILNGLAWLRSHVENLYLSFLPDLAD---PIYGDLLRYSDVGTAL 116 Query: 153 SSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF 212 + G G F + + P A Y +A+ F Sbjct: 117 T----------------------GELAGRFNVPGYASTGHTAPGSA-------YTDAIRF 147 Query: 213 QREIVKIHAVFGGKNPHPNWIVGGM----PCAINIDESGAVGAVNMERLNLVQSIITRTA 268 + + A+ GG++PH IV G P A ++ + A ++ L + Sbjct: 148 VKLTGEAEAILGGRSPHSPVIVPGGVTVRPSASDLMKLKGCYASIVDFLERRLTYPLSLD 207 Query: 269 DFINN-----------------------------------------VMIPDALAIGQFNK 287 +++ N +M D L++ + + Sbjct: 208 EWLENTHSTQANPDFILNRIKSLPTGDLSMEKGWNDMQLFSVFCSRMMSYDFLSMPIYVE 267 Query: 288 PWSEIGTGLSDKC--VLSYGAFPDIANDFG------------EKSLLMPGGAVINGDFNN 333 + G L D+ L+YG F + + G E + +P G N Sbjct: 268 LDTLGGYPLYDQLIGFLNYGGFYRVRDRAGNFTDGYSPVDGEEGTFEIPSGFTPGSMPNL 327 Query: 334 VLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQE 393 DP V E V +++ Y + P G T P D+ S Sbjct: 328 FDSPGKADPAMVAEQVSGSFFSYSGGETALKPEAGETSPSPRAADIDYS---------GH 378 Query: 394 RYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVD-RMMSALNLPLSGIQSTLGRI 452 +YS++KAPR+ E GPLAR + + ++ + + S R+ Sbjct: 379 KYSFVKAPRYGNVPCETGPLARMINSREPYIMNIMQMMHFSNPVFSSGKSYNRTSVYTRV 438 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 L R E A L + D L + + + P T G EAPRGAL Sbjct: 439 LSRMQECLITAQLLGRWIDDL-------EVHSDPRKYCVPVTPGRGEAGACMIEAPRGAL 491 Query: 513 GHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPE-------QPL 564 GHW + DG+I YQ + PTTWNASPRD + + G E +L+ K P+ Sbjct: 492 GHWMRLDEDGRIAGYQIISPTTWNASPRDAETKFGPIELSLIGAKTTPRGNIPGSEVNPI 551 Query: 565 EILRTLHSFDPCLACSTHVL 584 + + SFDPC++C+ H + Sbjct: 552 SLYHIIRSFDPCVSCAVHTI 571 >UniRef50_B3QGU5 Nickel-dependent hydrogenase large subunit n=3 Tax=Rhizobiales RepID=B3QGU5_RHOPT Length = 481 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 137/568 (24%), Positives = 209/568 (36%), Gaps = 89/568 (15%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 RR+ V P R+EG + ++++D V+ +A ++RG E IL+GR DA V RI Sbjct: 2 TRRITVGPFNRVEGDLEVRLDLDD-GVVRSAEVTAPLYRGFEQILRGRSAMDALTLVPRI 60 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C+ ++A+V A+ A G++ N + N+ A DHL HFY D+ Sbjct: 61 CGICSVSQSMAAVAALRAAGGVRPARNGVLAANLAHAAENAADHLTHFYLFFMPDFARDA 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 A + + + +++ Q L Q+ G W H P Sbjct: 121 YAGRPWHPEIAARFKAVQGS---------AAQAMLPARARLLQIMGLLAGKWPHSLAFQP 171 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 ++ + + +++ M + +E Sbjct: 172 GGTT------------CAIDLGERVQLLSIIGDFRDFLERTMFGDSLDNVLAIDSVAALE 219 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 R DF + + D LA+ + G ++S+GA+ G Sbjct: 220 AWRD-----GRGGDFARFLAVADDLALHRL---------GRIALPLMSFGAY------HG 259 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 E + L G + DP + E V AW R P + TDP Sbjct: 260 EDAPLFAAGVLDPLSAARTS----FDPAAITEDVARAWMR----DTSLSPLEADTDP--- 308 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 ++ YSW KAPR G EVG LAR I GD + V R Sbjct: 309 ------------DADKPAGYSWCKAPRLAGGPAEVGALARQAI---DGDPLIRDCVARFG 353 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 S R++ R E A + + +L + E Sbjct: 354 SC----------VTTRVVARLRETARLALAMHQWARQL----------DLAEPFLERGER 393 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 + G+G EA RG+LGHW +R I YQ + PT+WN SPRD G G E AL+ T Sbjct: 394 GRDGTGIGLVEAARGSLGHWIELRGDSIRRYQIIAPTSWNFSPRDRGGVPGPLEQALVGT 453 Query: 556 KMAIPEQP-LEILRTLHSFDPCLACSTH 582 + + I + SFDPC+ C+ H Sbjct: 454 PVGDAGARAVTIQHVVRSFDPCMVCTAH 481 >UniRef50_C0QPV5 Hydrogenase large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QPV5_PERMH Length = 457 Score = 303 bits (775), Expect = 1e-80, Method: Composition-based stats. Identities = 127/578 (21%), Positives = 200/578 (34%), Gaps = 136/578 (23%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG ++ ++ I + I +A FRG E IL+ R P DA RICG Sbjct: 3 KIERKVLHRVEGEIQLKL-IWENRRIKDAFIQNLNFRGFEFILENRPPLDALVITPRICG 61 Query: 78 VCTGVHALASVYAIEDAIG-----IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H +A+V A+ED I + A++IRN+ +H+ FY Sbjct: 62 ICGHSHLIATVKALEDIYRKNGYSIDISYKASLIRNVTHTVEIIQNHIRWFYLFVMP--- 118 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 + LK + L F Sbjct: 119 -----------------------------------DFLKLEKDKDILEDF---------- 133 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 + + +AL EI+KI ++ G+ PH ++ V G + I+ Sbjct: 134 ------TPLKGDKWKKALGISNEILKIISILSGQWPHTSYAVPGGVMSDPINTDIV---- 183 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 E +++ S+I + I I L++ F++ +I G + F ++ Sbjct: 184 --EAISITDSVIRFFEEEIIGTDINTYLSVESFDQFMDKINKGDLRR-------FIELTF 234 Query: 313 DFGEKSLLMPGGAVINGDF--------NNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRH 364 G + I D DP +++E H++ Sbjct: 235 KNGMEKTGRAYDRFITVDAILPCVREGVKKKRSCKFDPSRIKEVDSHSFLTKDGTD---- 290 Query: 365 PFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD 424 ++RYSW KA R+ G ME GPLAR ++ + Sbjct: 291 -------------------------FSRKRYSWAKAVRYDGLPMETGPLARKAVSK---N 322 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 + + + R S L RI R E A L+ + + N Sbjct: 323 SLFQDLISRFG----------DSYLVRIWARIDEIGRMALTLKSYLLSI-------NTKE 365 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ 544 S K E G G EA RG+L H + GKI Y + PTTWN PR + Sbjct: 366 PSYIKPPVKIENLEGEGTGLIEAARGSLLHRLELEKGKIKKYTIITPTTWNLGPRCER-Y 424 Query: 545 IGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 E A++ E L+ L SFD C C+TH Sbjct: 425 HSPAEKAIIGL-----ESSLKAEMILRSFDVCSVCTTH 457 >UniRef50_A8ZNU6 Hydrogenase large subunit HoxH n=62 Tax=Bacteria RepID=A8ZNU6_ACAM1 Length = 494 Score = 300 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 103/570 (18%), Positives = 174/570 (30%), Gaps = 113/570 (19%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 +R+++DP+TRIEGH + + ++D +T+A T FRG E +GR + RI Sbjct: 2 PQRIIIDPVTRIEGHAKISIYLDDAGEVTDARFHVTEFRGFEKFCEGRPFWEMPGITPRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LAS A + + + +P A +R +M H + F+ L+ D + Sbjct: 62 CGICPVSHLLASAKAGDQILAVHIPPAAEKLRRLMNLGQIIQSHALSFFHLSSPDLLL-- 119 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 G+ P + Sbjct: 120 -------------------------------------------------GWESDPAQRNV 130 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMP-CAINIDESGAVGAVNM 254 + ++ ++ GG+ HP W V G A+ + A + Sbjct: 131 FGLMAAEPDLARSGIRLRQFGQEVIQHLGGQKIHPAWAVPGGVRSALTDQGREQIRAGLL 190 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 E + S + R D + D + + + + GL + L Sbjct: 191 EVRSTALSTLKRFKDLLE-----DHASEARIFGNFPSLFMGLINPKGL------------ 233 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 G + D + D +DP Q Q F+ A + P+Y Sbjct: 234 ----WEHYQGCLRFVDSVGNIIADHLDPSQFQSFIGEAVQTD----------SYLKSPYY 279 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 P + R VGPLAR + G + + Sbjct: 280 RPLGYPDQTPGLC--------------RLESGMYRVGPLARLNVCDRMGTPLADQELQEF 325 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 N + S+ R E +++ + Sbjct: 326 RQRGN---GTVTSSFYYHYARLIEILACIERIEQQIED----------PGLCQPPLRAQA 372 Query: 495 WPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 + GVG +EAPRG L H + G + ++ T N + L Sbjct: 373 DVNQLEGVGVSEAPRGTLFHHYQVDATGLLQSVNLIIATGQNNLAMNRT-VAQIARHYLH 431 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 + + + +FDPCL+CSTH Sbjct: 432 GPDIP-ESMLNRVEAGIRAFDPCLSCSTHA 460 >UniRef50_Q0W6J7 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6J7_UNCMA Length = 471 Score = 297 bits (759), Expect = 1e-78, Method: Composition-based stats. Identities = 108/588 (18%), Positives = 195/588 (33%), Gaps = 141/588 (23%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ V P+TRIEGH + ++++D N T+A RG E LQGR +A V +IC Sbjct: 3 KQIKVSPVTRIEGHAQITIDVDDNNKATDARLNIMEIRGFEKFLQGRAVEEAPRIVTQIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LA+ A+++ G++ P AN++R +M + H H +HFY L D++ D Sbjct: 63 GICPVSHHLAAAKAVDECFGVEAPQTANMLRELMQYGQYIHSHSLHFYFLGAPDFVFTPD 122 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 +P + + ++ ++ F Sbjct: 123 ---GNPTQRNVFGIVGANPALATEAVMF-------------------------------- 147 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNME 255 ++ +I G++ +P +I GG+ + + + + + Sbjct: 148 ----------------RKIGQQIVEATAGRSINPVTYIPGGISKGLTQADVDRLLPMAKQ 191 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + Q+ + A I N I +G+ Sbjct: 192 AVTYAQNAL-ALAKPIFNQYIDAIKLLGEAES---------------------------- 222 Query: 316 EKSLLMPGGAVINGDFNNV---LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDP 372 M G V NG+ L + D ++EF + +Y ++ V Sbjct: 223 -----MHMGLVKNGNLELYDGMLRLQGKDGSIIKEFKPQDYLQYISEYVY---------- 267 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-----GNAMEVGPLARTLIAYHKGDAAT 427 +S++KAP W+ V PL+R + Sbjct: 268 ---------------------PHSYMKAPYWKEMGWENGMYRVSPLSRINVCDQIDTPLA 306 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 + A P TL R E +A+ K + Sbjct: 307 NAELQEFRKAFGRPAQM---TLLYHYARLIELLYASEKAVELLSN----------KAITG 353 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIG 546 ++ GVG EAPRG L H + G I +V T N + + Sbjct: 354 KELRVPVKARAATGVGVIEAPRGTLIHDYDTDEKGMITKANIIVATAHNNKAINLGLKNT 413 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISV 594 A ++N+ + + ++DPC +C+TH + ++ Sbjct: 414 A--QKIINSPTPEEGILNRMEMVIRAYDPCFSCATHSVAGKMPLEVTF 459 >UniRef50_A8AC91 Nickel-dependent hydrogenase, large subunit n=7 Tax=Thermoprotei RepID=A8AC91_IGNH4 Length = 664 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 140/642 (21%), Positives = 227/642 (35%), Gaps = 107/642 (16%) Query: 16 GRRLVVDPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 + +DPITRIEGH+ + ++ TN TMFRG E+ ++GR P DA A R Sbjct: 33 TAEIFIDPITRIEGHLGLKAEVDVTSRKTTNTWVFATMFRGFEVFMRGRPPEDAIAISSR 92 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNI-MLATLWCHDHLVHFYQLAGMDWID 133 +CGVC HA A+ A + A+G ++RN+ + T +DH + L G D+ + Sbjct: 93 VCGVCGASHANAATMATDMALGAVPTPLGVVLRNMAFVMTDLLYDHAIILNLLGGPDYSE 152 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 V S+L S K++P + V Sbjct: 153 V---------AVSKLTPSCWEAAKTTPAEYSAVHGY-------------------RTIAD 184 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 + + N + + + +QR + + G++ HP ++ G Sbjct: 185 IMKDMNPITGRIWQLTVKYQRIAREAGVLIYGRHSHPATLIPGGISTDLSTAQYLFEGYA 244 Query: 254 MERLN------LVQSIITRTADFI--------NNVMIPDALAIGQFNKPWSEIGTGLSDK 299 V ++ ADF + E + L D Sbjct: 245 FRLTQLTAWTKFVVAVWMDLADFYNKNCNYEDEGYTYSKPILYSSGVFDDPEAYSQLGDD 304 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLP--VDLVDPQQVQEFVDHAWYRYP 357 Y ++A L GG ++ + V+LVD +E+ D Sbjct: 305 YKTIYEKIDEVAKKRAAPPGLYIGGELVTENITEHQRNVVELVDSSFYEEWKDKTTLFTK 364 Query: 358 NDQVGRHPFDG-ITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPR--WRGN--AMEVGP 412 D G G T WY+P + + + +YSW R W+G EVGP Sbjct: 365 TDPAGNPLVGGDETLVWYHPWNKT-TIPRPTDSSWSGKYSWAATVRLYWKGKLYPFEVGP 423 Query: 413 LARTLIAYHKGDAATVESVDRMMSALN---------------------------LPLSGI 445 +A+ + H VE + Sbjct: 424 IAKMYVMAHSNLKGWVEEEGAPVKHGGGKIEVTLPASRNVTDLPKGTWEEVTFTYYAPPK 483 Query: 446 QSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFT 505 +T+ R+ RA + F + + + + + AS P P G G Sbjct: 484 STTIERVRARAFDMAVDVADAWAFVLRGLYYINSKGMTQAS----RPWKEPAFSLGFGQL 539 Query: 506 EAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQ-------------------IG 546 E PRG + HW +++G+I YQ PTT N PR PKG+ + Sbjct: 540 EVPRGNVEHWIVVKNGRIANYQIHAPTTQNVGPRAPKGELARYCANEPWVTKSPEGYCLS 599 Query: 547 AYEAALMNTKMAIPEQP-----LEILRTLHSFDPCLACSTHV 583 +EAA ++T ++ +P L+ +R + SFDPC+AC+ H+ Sbjct: 600 PFEAAALHTVVSEEVEPEKWTGLDYVRAIRSFDPCIACAAHI 641 >UniRef50_Q7WXQ3 Putative n=41 Tax=Bacteria RepID=Q7WXQ3_RALEH Length = 603 Score = 295 bits (754), Expect = 4e-78, Method: Composition-based stats. Identities = 153/622 (24%), Positives = 238/622 (38%), Gaps = 111/622 (17%) Query: 22 DPITRIEGHMRCEVNIN-DQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 DPITRI G + I+ + + S ++FRG I ++G+DPRD+ RICG+C Sbjct: 26 DPITRIVGSLGIYTKIDFENRRVAECYSTSSIFRGYSIFMKGKDPRDSHFITSRICGICG 85 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 HA SVYA A G+K P A+ I N+ A + DH + L G+D+ + + ++ Sbjct: 86 DNHATCSVYAQNMAYGVKPPPIADWIINLGEAAEYMFDHNIFQDNLVGVDFCEQM--VRE 143 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 E A++ + + GY + N Sbjct: 144 TNPGVWEKAKTAEAPHAAEHGYR--------------------------TIADIMTALNP 177 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLV 260 Y E L R ++ + G++ HP+ + G + + L Sbjct: 178 FTGEFYRETLLVSRYTREMFCLMEGRHVHPSTLYPGGVGTVPT-------------IQLF 224 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEI----GTGLSDKCVLSYGAFPDIA----- 311 ITR ++ + L F+ + + G + +G+F D Sbjct: 225 TDYITRLMKYVEFMKKVVPLHDDLFDFFYEALPGYEEVGRRRILLGCWGSFQDPNVCDYN 284 Query: 312 ----NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQV------QEFVDHAWYRYPNDQV 361 +G + P G V++G+ VD+ ++ + DH ND + Sbjct: 285 YRTMTKWGRGMFVTP-GVVVDGELLTTDLVDINLNIRILLGSSFYQDWDHEETSVKNDPL 343 Query: 362 G-----RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN------AMEV 410 G +HP++ T P Q+ N Y+W+ +PRW A++ Sbjct: 344 GNAVDRKHPWNQTTLP------------RPQKRNFGGNYTWVMSPRWLDKRTGDHLALDT 391 Query: 411 --GPLARTLIAYHKG------DAATVESVDRMMSALNLPLSG--------IQSTLGRILC 454 GP+AR G +T SV + L + + R Sbjct: 392 GGGPIARLWATALAGLVDIGYIKSTGHSVKIYLPRTALKPEAEFEWKIPMWSNAIERDRA 451 Query: 455 RAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGH 514 R + ++A YF ++ + L G T + K P E G GF EA RG L H Sbjct: 452 RTYFQAYSAAAALYFAEQALAELHAGRTRTFTDFK-----VPDEAIGCGFHEAVRGVLSH 506 Query: 515 WAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQP-----LEILRT 569 IRDGKI Y PT WNASPRD G G YE A+ NT + P ++I+R Sbjct: 507 HLVIRDGKIANYHPYPPTPWNASPRDIYGTPGPYEDAVQNTPIFEENGPEKFKGIDIMRA 566 Query: 570 LHSFDPCLACSTHVLGDDGSEL 591 + SFDPCL C H+ +G + Sbjct: 567 VRSFDPCLPCGVHMYVGNGKTI 588 >UniRef50_C7NU24 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NU24_HALUD Length = 472 Score = 291 bits (745), Expect = 4e-77, Method: Composition-based stats. Identities = 111/578 (19%), Positives = 191/578 (33%), Gaps = 133/578 (23%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 ++ V+DP+TR+EGH + ++++D+ + +A T FRG E ++GR + RI Sbjct: 2 SKKEVIDPVTRVEGHGKITIHLDDEGSVEDAQFHVTEFRGFEEFVEGRPIWEMPEITARI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LA+ A +D + VP++A+ +R +M H + F+ L+ D + Sbjct: 62 CGICPVSHQLAAAKAADDVMDADVPESAHKLRELMHMGQVLQSHALSFFYLSSPDLVLGY 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 DA AD LA++ Sbjct: 122 DADPADRNIEGVLAENPQ------------------------------------------ 139 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 +D + + A G K HP++ V GG+ ++ ++ + + Sbjct: 140 ---------LAERGIDLRSFGQNVIAALGEKKVHPDFAVAGGVSNTLDREDGEDLLEESQ 190 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 V+ I D + D L Y +P Sbjct: 191 PLAGYVRETIDLLKDIFEEM-----------------------DDDTLDYATYPTGYM-- 225 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 G G + + + G Sbjct: 226 --------GLVTEEGGLE-----------------------HYDGDIRLVDESGDQLEEI 254 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAME-----VGPLARTLIAYHKGDAATVE 429 + G + +S++K P ++ E VGPLAR E Sbjct: 255 DDGA-----YRDIIAERSKEWSYLKFPYYKDRGFEDGQYRVGPLARLNAVDDVRTPQAHE 309 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 M A + + R E + ++Q + ++ +G + Sbjct: 310 EWVEFMDAAEGAVHERSTYY--HWARLIEMLYCVERIQELLED--DDVYDGITNIPT--- 362 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAY 548 P GVG EAPRG L H I D GK++ +V TT N + KG A Sbjct: 363 -----KPKAGTGVGVIEAPRGTLIHEYTIDDGGKVENANFIVATTHNNGAMN-KGVTSAA 416 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 E + ++ ++ + +DPCL+CSTH +G+ Sbjct: 417 ETFIDGPEIP-EGILNKMESVIRCYDPCLSCSTHAIGE 453 >UniRef50_UPI0001C16F92 Nickel-dependent hydrogenase, large subunit n=2 Tax=Nostocaceae RepID=UPI0001C16F92 Length = 482 Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 184/583 (31%), Gaps = 119/583 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++V+DP+TRIEGH + + ++D+ + +A T FRG E GR + RIC Sbjct: 2 KKIVIDPVTRIEGHAKISIYLDDEGHVDDARFHVTEFRGFEKFCVGRPFPEMPGITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H LAS + + + +P+ A +R +M H + F+ L+ D + +D Sbjct: 62 GICPVSHLLASAKTGDKILSVTIPEVATKLRRLMNLGQIIQSHALSFFHLSAPDLLLGMD 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + A + + + + G HP + +P Sbjct: 122 SEPAKRNVFGLIG--VDPELARGGIRLRQFGQEIIE---------LLGGKKIHPAWAVP- 169 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 GG+ + + + E Sbjct: 170 --------------------------------------GGVSDPLTTENRSHIQNRIPEA 191 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + V + I + N K ++G FP + Sbjct: 192 KSTVLNAIALFKKLLENY-----------------------QKEAQTFGNFPSLFMG--- 225 Query: 317 KSLLMPGGAVI--NGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 L+ P G +G V + +++ H + + V + + P+Y Sbjct: 226 --LVTPQGLWETYDGHLRFVDSGGNIVADKLEADNYHEF---IGEAVQEDSY--LKSPYY 278 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 P S + R VGPLAR I G + + Sbjct: 279 RPLGYPDSKDHC---------------RLDSGMYRVGPLARLNICSQIGTPLADQELREF 323 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + + ++S+ R E + ++ D + + A Sbjct: 324 RTYGS---GTVKSSFFYHYARLIEILASVEHIEILLDD----------PDILSTRLRAAA 370 Query: 495 WPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 VG +EAPRG L H I +G I ++ T N + + Sbjct: 371 GINRLEAVGVSEAPRGTLFHHYRIDENGLIQKVNLIIATGQNNLAMNRT-VAQIARHFIQ 429 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 +++ + + +FDPCL+CSTH G + +++ Sbjct: 430 GSQIQ-EGMLNRVEAGIRAFDPCLSCSTHAF---GKMPLVIEL 468 >UniRef50_Q00404 F420-non-reducing hydrogenase vhc subunit A n=10 Tax=Euryarchaeota RepID=VHCA_METVO Length = 474 Score = 287 bits (735), Expect = 6e-76, Method: Composition-based stats. Identities = 109/588 (18%), Positives = 198/588 (33%), Gaps = 135/588 (22%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TR+EGH + ++ +D + RG E L+GR DA F RICG Sbjct: 3 KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPIFTPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H LAS A+++ G+K+P+ AN++RN++ H H +HF LA D + Sbjct: 63 ICQVSHHLASAKAVDNVFGVKIPETANMLRNLIHQASNVHSHALHFGMLASPDLM----- 117 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + + ++ G + + +K + ++G G Sbjct: 118 ----------FPTTDDALKRNLLGVAGENMDMIKDSIAMRKVGQTIVQKVG--------- 158 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMER 256 G+ HP IVGG + +E + ++ Sbjct: 159 ---------------------------GRAIHPVTAIVGGQSKPLTEEERDELLTLSDNL 191 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 + + + + + N+ D + +G F ++ + G Sbjct: 192 VETAERTLNVGKEMVENLKEKDLMNLGYFE-------------------SYHMGLVNNGA 232 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDP-QQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + + V+N + D + + E V Sbjct: 233 QDIYEGNIRVVNSEGKIEYEFDPAEYANYITEGVR------------------------- 267 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKA-----PRWRGN-AMEVGPLARTLIAYHKGDAATVE 429 YS++K R G A V L+R + + Sbjct: 268 ------------------PYSYLKFLALLKRRGEGKGAYRVNTLSRLNVCDKMPTPIAQK 309 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 + + P + R E ++ ++ F + + + + Sbjct: 310 YYEEFVKTYGKPAHQ---PMLFHYARLIELLSSSELIRKFLED--------DKIVDTDVR 358 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAY 548 E GVG EAPRG L H D G I+ VV T N D G Sbjct: 359 AEVDPKNITGEGVGCVEAPRGTLIHHFKTDDRGIINDTNLVVATVQNNPAMDI-GVQKVA 417 Query: 549 EAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 E + ++A P + + ++DPCL+C+TH +G + +++S+ V Sbjct: 418 EKYIKTPEVAKPHILNHMEMVIRAYDPCLSCATHTIG-EEPKILSIHV 464 >UniRef50_Q50783 F420-non-reducing hydrogenase subunit A n=6 Tax=Methanobacteriales RepID=MVHA_METTH Length = 472 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 114/589 (19%), Positives = 180/589 (30%), Gaps = 140/589 (23%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 +L ++P+TRIEGH + V+++D + + FRG E LQGR +A V RICG Sbjct: 3 KLTMEPVTRIEGHAKITVHLDDAGNVEDTRLHVMEFRGFEKFLQGRPIEEAPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVP---DNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 +C H LA+ A++ G + A +R IM + H H +HFY LA D+I Sbjct: 63 ICDVQHHLAAAKAVDACFGFEPEDVLPAAYKMREIMNWGSYMHSHGLHFYFLAAPDFIAG 122 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 D RKT + Q + P Sbjct: 123 KD------RKTRNVFQIIKDAP-------------------------------------- 138 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVN 253 + L AL ++ GG+ HP + GG+ ++ + + Sbjct: 139 --DIALQAIELRKNAL-------ELVRATGGRPIHPTSSTPGGISTELDDETQKDLLKKA 189 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 + L ++ + + ++ L + G D D Sbjct: 190 QRNVELAEATLELAV---------------PIFEENIDLVNSLGNIETYHTGLVKDGVWD 234 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + + + F P D D + E V Sbjct: 235 VYDGIVRIKDK--EGNMFREFKPADYAD--TIAEHVK----------------------- 267 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPR-----WRGNAMEVGPLARTLIAYHKGDAATV 428 YSW+K P + V PL+R +A Sbjct: 268 --------------------PYSWLKFPYIKDLGYPDGVYRVSPLSRLNVADKM--PDAA 305 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 Q TL R E A + S E Sbjct: 306 PKAQEHFKEFRENFGYAQQTLLYHWARLIELLACAECAADALE-----------GDLSGE 354 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 K+ + GVG EAPRG L H +G I VV T N + G Sbjct: 355 KFPDSLERQAGDGVGIVEAPRGTLTHHYTCDENGLITKANIVVATIQNNPAME-MGIQKV 413 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + + + + + ++DPCL+C+TH + L +++V Sbjct: 414 AQDYIKPGVEVDDKIFNLMEMVIRAYDPCLSCATHTIDSQMR-LATLEV 461 >UniRef50_A7BI76 Ni,Fe-hydrogenase large subunit n=1 Tax=Hydrogenobacter thermophilus RepID=A7BI76_HYDTH Length = 438 Score = 284 bits (725), Expect = 8e-75, Method: Composition-based stats. Identities = 120/572 (20%), Positives = 193/572 (33%), Gaps = 142/572 (24%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+ + R+EG + E+ + + I +A RG+E +L+GR DA R+CG Sbjct: 2 RIEKRLLARVEGTAQLEL-VWENGRIRDARVRIPSSRGIERVLEGRPFMDALVITPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIG-IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C H +A V A+EDAIG +++ A ++R+I L +H+ FY Sbjct: 61 ICGHAHLMACVKALEDAIGHVRLSQKAKLVRDITLMVEMIQNHIKWFY------------ 108 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 F + + ++ + + FR W Sbjct: 109 --------------------------LFVMPDFIRLGEKLDEFEPFRGKRWK-------- 134 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 EA+ E +K+ A+FGG+ PH ++ V G G Sbjct: 135 -----------EAISVASEAIKVIAIFGGQWPHSSYAVPG----------GITSNFTSTD 173 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 ++ ++++R F ++ S G + F D+ +G Sbjct: 174 VSKALALVSRVEGFFLESLVG-----MPVEAFLSLRKHGSWEGLKGDVKLFIDLCFKYGL 228 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + + M G ++ G G P P Sbjct: 229 ERVGMSYGRLLTG--------------------------------------GEVFPCITP 250 Query: 377 GDVKGSDTNIQ------QLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 G G + + YS K R+ G E GPLAR ++ G+ Sbjct: 251 GHFTGEKKLCSLNISKIREADGSPYSGAKRVRYNGMPYETGPLARQFLS---GNPFVKR- 306 Query: 431 VDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 L S + R+L R E ++ L + +K + Sbjct: 307 ---------LHKMYGDSYMVRVLSRLLEVWELTSTVKEKLTSLYSFIKE---PSCQIPFQ 354 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 +P GVG EA RG L H +I G I Y + P+ WN PR K +G E Sbjct: 355 KPERI--TGEGVGIVEAARGTLIHRVSIEKGVITRYHIITPSVWNLGPRCEK-YLGVAEK 411 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 A++ E P+ L SFD C C+TH Sbjct: 412 AMIGL-----ENPIHAEMVLRSFDVCSVCTTH 438 >UniRef50_Q0W6U1 Coenzyme F420-non-reducing hydrogenase (Methyl viologen-reducing hydrogenase), alpha subunit n=2 Tax=Euryarchaeota RepID=Q0W6U1_UNCMA Length = 467 Score = 283 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 111/594 (18%), Positives = 195/594 (32%), Gaps = 145/594 (24%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ + PITRIEGH V ++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKITIHPITRIEGHASVTVQLDDKGEVADAHFHATELRGFEKFLEGAAIEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C VH LA+ A+++ G +P+ A +R +++A H +H + L+ D+ Sbjct: 62 GICPTVHHLAAAKAVDEVFGATIPEAAYKMRELLIAGQLISSHYLHLFMLSMPDY----- 116 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L + + ++ G + + +E ++G Sbjct: 117 -----------LLEGATPATRNVAGLAKANPDLARMAIEARKIG---------------- 149 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNME 255 QR + GGK HP + I GGM ++ + + A Sbjct: 150 ----------------QRITEEA----GGKPIHPVSAIPGGMSFSLTEQKRAELEAYAKR 189 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L ++ A+ + +F Sbjct: 190 SLE-------------------------------------------IAVAAWNLVNGEFD 206 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 K+ + V+ DF + + + + +G + + Sbjct: 207 RKADFVKTLGVVQTDFIGMTSGGKFETY--------------DGPIRMMDANGGSLGEFQ 252 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNA--MEVGPLARTLIAYHKGDAATVESVDR 433 D + E YS++K + + + VGPLAR +A G + + Sbjct: 253 A-----KDYSSHIEEYAEPYSYMKFTKLKSGSGFYRVGPLARVNVADSMGYPEADKMLAE 307 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + Q L R E A+ + + A P Sbjct: 308 FRAKYG---RAPQQPALYNLARIIEVAAASERALALLQ---------DRAITDKNVRNPV 355 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 RGVG EA RG L H + D G I +V T N D G +E A Sbjct: 356 AGIKNTRGVGIVEATRGTLIHDYTVNDKGFITSANLIVATGHNNRAID----RGVFETAK 411 Query: 553 MNTK-MAIPEQPLEILRTLHSFDPCLACSTHVL----------GDDGSELISVQ 595 A +I + ++DPC++C+TH + +G+ + V+ Sbjct: 412 KYIHGDADEATLNKIEMLVRAYDPCVSCATHAIGRMPIILSLFDSEGNVIREVK 465 >UniRef50_P22320 NAD-reducing hydrogenase hoxS subunit beta n=5 Tax=Bacteria RepID=HOXH_RALEH Length = 488 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 120/593 (20%), Positives = 188/593 (31%), Gaps = 131/593 (22%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+LV+DP+TRIEGH + V+++D N + +A FRG E +QG +A F++RI Sbjct: 2 SRKLVIDPVTRIEGHGKVVVHLDDDNKVVDAKLHVVEFRGFEKFVQGHPFWEAPMFLQRI 61 Query: 76 CGVCTGVHALASVYAIEDAIG------IKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 CG+C H L A++D +G I V A +R + H ++ L Sbjct: 62 CGICFVSHHLCGAKALDDMVGVGLKSGIHVTPTAEKMRRLGHYAQMLQSHTTAYFYLIVP 121 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 + + +DA A + G + +K+ V + G Sbjct: 122 EMLFGMDAPPAQR---------------NVLGLIEANPDLVKRVVMLRKWG--------- 157 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 ++ GK H V G Sbjct: 158 ---------------------------QEVIKAVFGKKMHGINSVPGGVNNNLSIAERDR 190 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 E L V +I D + F++ +D LS D Sbjct: 191 FLNGEEGLLSVDQVIDYAQDGLRLFY--------DFHQKHRAQVDSFADVPALSMCLVGD 242 Query: 310 IANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 N L + D V+EF H + + ++ V Sbjct: 243 DDNVDYYHGRL---------------RIIDDDKHIVREFDYHDYLDHFSEAV-------- 279 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-----GNAMEVGPLARTLIAYHKGD 424 E +S++K P + ++ VGPL R + Sbjct: 280 -----------------------EEWSYMKFPYLKELGREQGSVRVGPLGRMNVTKSLPT 316 Query: 425 AATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLAT 484 E+++R + + + TL RA E AA ++ +L+ L Sbjct: 317 PLAQEALERFHAYTKGRTNNM--TLHTNWARAIEILHAAEVVKELLHD--PDLQKDQLVL 372 Query: 485 ASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKG 543 GVG EAPRG L H + G I VV TT N + Sbjct: 373 TPPPN------AWTGEGVGVVEAPRGTLLHHYRADERGNITFANLVVATTQNNQVMNRTV 426 Query: 544 QIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + E L I + ++DPCL+C+TH L G + V V Sbjct: 427 R-SVAEDYLGGHGEITEGMMNAIEVGIRAYDPCLSCATHAL---GQMPLVVSV 475 >UniRef50_A0JHK3 Putative Ni,Fe-hydrogenase large subunit (Fragment) n=2 Tax=Betaproteobacteria RepID=A0JHK3_PSEHY Length = 448 Score = 276 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 135/541 (24%), Positives = 192/541 (35%), Gaps = 93/541 (17%) Query: 32 RCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAI 91 + ++ +T A +FRG E ILQGR P DA V RICG+C+ ++A+ A+ Sbjct: 1 EVTLTLDAAGFVTRAQVNSPLFRGFERILQGRAPLDALTIVPRICGICSVAQSMAAAQAL 60 Query: 92 EDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQS 151 D IK N ++ +LA DHL HF+ D+ A + P + + + Sbjct: 61 ADWARIKPVPNGALVAQTVLAVENLADHLTHFFLFFMPDFT--HSAYRTMPWFDAAVRRF 118 Query: 152 LSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALD 211 +S+ + R + F L G W H P H +E Sbjct: 119 APYRGESAARWLAA---RAQWF----HLVGLLAGRWPHTLAVQPSGTTR--TIHAME--- 166 Query: 212 FQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFI 271 QRE++++ VG M + G + + Sbjct: 167 -QRELLRM--------------VGQMRRYLTESLFGDTLDAVL-----ALDSADALLAWA 206 Query: 272 NNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDF 331 DA Q G + LSYGA+ P G Sbjct: 207 EGR-ESDAAFFIQVAHALELFTVGRAYDRFLSYGAY-----------RAWPAGVWERATA 254 Query: 332 NNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNE 391 +V +D + E V +W HP +G T P L Sbjct: 255 ASV----PLDEAAIVEEVAASWL----GGAASHPAEGETVP---------------WLER 291 Query: 392 QERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGR 451 + YSW KAPR+ G E G LAR ++A G + V R S R Sbjct: 292 PDAYSWCKAPRYHGAPAETGALARAVVA---GVPLARDLVQRWGG----------SLFSR 338 Query: 452 ILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGA 511 ++ R E ++ + ++ EP WP E RGVG EA RGA Sbjct: 339 VIARLWECARIVQWVEAWLTEI----------DVKAPFIEPVVWPNEGRGVGLVEAARGA 388 Query: 512 LGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLH 571 LGHW + +G+I YQ + PTTWN SPRD GQ G E AL P + + Sbjct: 389 LGHWLEVANGRIQRYQIIAPTTWNFSPRDQTGQPGPLEKALEGLTTGAGAMPF-VHHVVR 447 Query: 572 S 572 S Sbjct: 448 S 448 >UniRef50_B3E9J3 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B3E9J3_GEOLS Length = 479 Score = 272 bits (695), Expect = 3e-71, Method: Composition-based stats. Identities = 120/606 (19%), Positives = 191/606 (31%), Gaps = 139/606 (22%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 MS Q ET R + +DP+TRIEGH + VN+ + + NA RG E IL Sbjct: 1 MSAQTETPN------SRTIRIDPVTRIEGHAKVFVNLAEDGSLDNAGLVVNELRGFEKIL 54 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 G + RICGVC H +A+ A++ A G+ P A ++R +M H H Sbjct: 55 VGMEANRMPHITARICGVCPTAHHIAASNALDHACGVVAPPAAMLLRELMYMGHIIHSHA 114 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 + + L G D + LDA A + Sbjct: 115 LSLFVLQGPDLVLGLDADPAIRNVVGIVQ------------------------------- 143 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPC 239 AN L + + +I GG+ HP V GG+ Sbjct: 144 -----------------ANPEVAKKALRIRTVGQRLNEIV---GGRGTHPVTSVAGGITF 183 Query: 240 AINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDK 299 ++ ++ + ++ E L + + + ++ + + P +GT L ++ Sbjct: 184 VLDSEKRAMLQSLVDEGKQLAKDLAPVVKQLVVTMLERHPAMLTDWVAPSWSVGTVLDNR 243 Query: 300 CVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPND 359 L G NG PV D V+ VD ++ + Sbjct: 244 VSLIQGNI---------------RAVDENGITQVEFPVQDYDKYMVESVVDFSYMKRVGF 288 Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 + G D VGPLAR Sbjct: 289 KKGGLLHD----------------------------------------YRVGPLARINAM 308 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 ++ M+ P TL + + E WA + N Sbjct: 309 QQFSTEWANREMEEMLKLGGYPCHI---TLFQAYAKLVEMIWAIERADDILRD---PAVN 362 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASP 538 G R VG +EAPRG L H I DG + +V T N + Sbjct: 363 GETRVPVKF--------QGGRAVGHSEAPRGTLIHDYEIDEDGIVRAANLIVATQQNYAI 414 Query: 539 RDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD---------DGS 589 + + A + + K I ++ +DPCL+C+TH +G G Sbjct: 415 INRSIEHAA--KSHVIGKSDDQALLNAIEFSIRCYDPCLSCATHAVGAMPMEISINRGGR 472 Query: 590 ELISVQ 595 + +++ Sbjct: 473 TVKTIR 478 >UniRef50_UPI0001C41F73 methyl viologen-reducing hydrogenase alpha subunit MvhA n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41F73 Length = 470 Score = 272 bits (694), Expect = 4e-71, Method: Composition-based stats. Identities = 109/583 (18%), Positives = 181/583 (31%), Gaps = 131/583 (22%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++P+TRIEGH + V++++ + + FRG E LQGR + V RICG+C Sbjct: 1 MEPVTRIEGHAKITVHLDEAGNVEDTRLHVMEFRGFEKFLQGRPAEEVPRIVPRICGICD 60 Query: 81 GVHALASVYAIEDAIGI---KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 H LA+ A++ G + A +R +M + H H +HFY LA D + Sbjct: 61 VQHHLAAAKAVDQIYGFNDDDILPAAYKMRELMNWGSYMHSHALHFYFLAAPDLV----- 115 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + RKT + Q + P+ + +K G + G HP P Sbjct: 116 VPNGTRKTRNVFQIIQDMPEVAL-------QAIKIRRNGLDIVSATGGRPIHPTSSTP-- 166 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 GG+ ++ + + A E + Sbjct: 167 -------------------------------------GGISTELDEETQADLLAKAKENV 189 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 L Q+ I + + D + + G D Y I + G Sbjct: 190 ELAQATIELAVPILEEKI--DLVKTLGYFGDTRHCGIVTKDGDWDVYNGKVRIKDKDG-- 245 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVD-HAWYRYPNDQVGRHPFDGITDPWYNP 376 + ++ D V E V ++W ++P Sbjct: 246 -----------SIYTEYRNLEYKD--IVAEHVKPYSWLKFP------------------- 273 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGD--AATVESVDRM 434 +IK + V PL+R + D +++ Sbjct: 274 --------------------YIKELGYPEGIYRVAPLSRINVCDKMPDAAPLAQGALEDF 313 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 Q L R E +A ++ S +K+ A Sbjct: 314 RDRFGY----AQYPLLFHWARLIELLASAEMAVDALEQ-----------DLSGDKFPDAL 358 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 T G G EA RG L H D G I +V T N + G + + Sbjct: 359 ERTAGEGAGIVEAARGTLIHHYTTDDEGLITQANIIVATIQNNPAME-MGIQQVAKDYIK 417 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + + + + DPCL+C+TH + L +V+V Sbjct: 418 PGVEVDDKIFNLMEMVIRAHDPCLSCATHTMDSQMR-LATVEV 459 >UniRef50_C8X545 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X545_DESRD Length = 486 Score = 270 bits (690), Expect = 1e-70, Method: Composition-based stats. Identities = 115/584 (19%), Positives = 190/584 (32%), Gaps = 117/584 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ +DP+TR+EGH + ++ +ND + ++ RG E QGR + +IC Sbjct: 3 KKISIDPLTRLEGHGKIDIFLNDDGTVQDSYFQVVELRGFEQFCQGRPVEELPRITPKIC 62 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVC G H +AS A + G+ P A IR + H H++HF+ LA D++ + Sbjct: 63 GVCPGAHHMASSKAADAVYGLTPPPAARKIRELFYNAHIAHSHILHFFALAAPDFMPGPE 122 Query: 137 ALKADPRK---TSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 A EL + + GY +Q + G+ HP Sbjct: 123 AGPGKRNILGLVDELGKGAVRRVLQNRGYAQKIQGLIA-------------GHPIHPVAS 169 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LP GGM ++ + + Sbjct: 170 LP---------------------------------------GGMAGPVSEKTRQEIAGMA 190 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 E I A F LA ++ +L+ F + Sbjct: 191 SE--------IREFAQFALWFFENHILA-------------QDRNRELLTGELFTHRTHY 229 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 G L+ G V ++ L V + + + +F + + + V P+ + P+ Sbjct: 230 MG---LVDSQGRVNF--YDGQLRVVTPEGETMAQFDGSDYLEHLAETVL--PWSYMKFPY 282 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 G V LAR +A E+ + Sbjct: 283 LRDKGWHGLIDGA-----------------DSGVYRVNSLARLNVADGMATPLAQEAYET 325 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 M + + I +TL R E AA L + + + S + P Sbjct: 326 MRAFYG--GTPIHNTLAFHWARLVELMQAA----EALVDLSQDPEVTDTNVRSLPEGRP- 378 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 GVG EAPRG+L H +G + +V T N + + A L Sbjct: 379 -----GEGVGVVEAPRGSLIHHYTTDANGLVKTVNLIVATVQNNAGMGMSVKKAA--QGL 431 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + I ++DPCLAC+TH L G + V++ Sbjct: 432 IQDGAPDEAVLDMIEMGYRAYDPCLACATHAL--PGESDLEVRL 473 >UniRef50_D1Z1J2 F420-non-reducing hydrogenase subunit A n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1J2_METPS Length = 469 Score = 268 bits (685), Expect = 4e-70, Method: Composition-based stats. Identities = 116/591 (19%), Positives = 189/591 (31%), Gaps = 139/591 (23%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++L + P++RIEGH +N++D+ + +A T RG E L+G +A RIC Sbjct: 2 KKLTIHPLSRIEGHASVTINLDDKGEVADAHFHATELRGFEKFLEGAAVEEAPRITPRIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C VH LAS A+++ G +VP+ A +R ++ + H H +H + LA D+I Sbjct: 62 GICPTVHHLASAKAVDEIFGAQVPETALKLRRLLDMGQFIHSHALHLFLLALPDYI---- 117 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L + ++ G K +EG ++G Sbjct: 118 -----------LGPDYNPALRNVVGLVQANPELAKMAIEGRKIG---------------- 150 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 QR + GGK HP V G G A+ E+ Sbjct: 151 ----------------QRITEE----TGGKPIHPVSAVPG----------GMSFALANEK 180 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 ++++ R+ + I + P + + GL + Sbjct: 181 RAELEAMAKRSVE-IARISWPVVMKMMDKYADLVNS-VGLVQSDFV-------------- 224 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 G NG + V G+ + Sbjct: 225 -------GLTRNGKLEFY-----------------------DGNVRAIDSGGVQLADF-- 252 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWR--GNAMEVGPLARTLIAYHKGDAATVESVDRM 434 G D E YS++K + + VGPLAR I G + + Sbjct: 253 ---PGKDYLSYIEETAEPYSYMKFTKLKKGNGFYRVGPLARVNIVDSIGTPEADKMLAEF 309 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + Q +L R E A+ + A T Sbjct: 310 RAKYG---RVPQQSLLYHAARTIEYMAASETALSLLQ---------DSAITDKNVRTAVT 357 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 RG+G EA RG L H + D G I +V T N D L+ Sbjct: 358 GVKNTRGIGVVEATRGTLIHDYTVNDKGFITKANLIVATGHNNRAIDRAVLQS--SQKLI 415 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTH----------VLGDDGSELISV 594 + I + ++DPC++C+TH V+ +G+ + V Sbjct: 416 HGDNVSEGTLNRIEMVVRAYDPCVSCATHAIGRMPVQLTVVDSEGNVIREV 466 >UniRef50_B1ZXG2 Nickel-dependent hydrogenase large subunit n=11 Tax=cellular organisms RepID=B1ZXG2_OPITP Length = 509 Score = 268 bits (684), Expect = 5e-70, Method: Composition-based stats. Identities = 112/569 (19%), Positives = 183/569 (32%), Gaps = 113/569 (19%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DPITR+EGH + +V +++ + A RG E+ GR D RICGV Sbjct: 27 VTIDPITRLEGHGKIDVFLDEAGDVERAYLQIPELRGFEVFSLGRPAEDMPQITSRICGV 86 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H +A+ A++D ++ A IR ++ DH +H Y L G D+I A Sbjct: 87 CPTAHHMAATKALDDLYHVEPTPAARKIRELVYNAFMIEDHSLHVYLLGGPDFIVGPQAP 146 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 A+ + + K ++ + F G HP LP Sbjct: 147 AAERNVIGVINKVGLEVGKRVIATRRRLRELIAYF----------GGKVIHPVLGLP--- 193 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 GG+ + ++ A+ + L+ Sbjct: 194 ------------------------------------GGVAKGLKPEDLATFQALAADTLD 217 Query: 259 LVQSIITRTADFI--NNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 Q + D + N + + ++ + ++K AF D Sbjct: 218 FAQFTLQVFRDLVIANQDYVKLITSDPYTHRTYYMGLVDAANKV-----AFYDGQIRV-- 270 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 +G PV + + E V P+ + + P Sbjct: 271 --------VDADGREYAKFPVQRY-REFIAEHV--------------EPWSYVKFCYLKP 307 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 G E+ S I V PLAR +A ++ D S Sbjct: 308 LGWHG--------FEEGPASSI---------YAVAPLARLNVADGMATPLAQKAYDEYFS 350 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 AL + TL R E AA ++ L+++ + + + +P Sbjct: 351 ALG--GKPVHHTLANHWARVVEILAAAERMVE----LVSDPEILSTDLRTIPTAKPTV-- 402 Query: 497 TECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G+G EAPRG L H + G I L +V T NA+ A +L+ Sbjct: 403 ----GIGVVEAPRGTLFHHYETDERGLITLANLIVATQNNAARIAMSVDRAA--KSLIKQ 456 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVL 584 I ++DPC C+TH L Sbjct: 457 GQVSDGLMNMIEMAFRAYDPCFGCATHAL 485 >UniRef50_A0LQC1 F420-non-reducing hydrogenase subunit A n=5 Tax=Deltaproteobacteria RepID=A0LQC1_SYNFM Length = 449 Score = 264 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 103/561 (18%), Positives = 173/561 (30%), Gaps = 114/561 (20%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 G+ + + P+TRIEGH + ++D+ + ++ RG E ++G+ + V RI Sbjct: 2 GQLINIQPVTRIEGHASIAIQLDDRGEVQDSRVHFMSLRGFEKFVEGKPAEELPRIVNRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LAS A++ G+ P +R +M A D ++HFY LA D++ Sbjct: 62 CGICPWQHHLASNKAVDRCFGVTPPPAGRKLRELMQAISHSEDKILHFYFLAAPDFVMGP 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 D+ R +A++ + + L+KF G HP Sbjct: 122 DSDYGV-RNVIGVAKAHPELAGRVVRMRYATKMILEKF----------AGKAIHPHA--- 167 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 +VGG + ++ E Sbjct: 168 ------------------------------------GVVGGFSRVLLEEDRREFLGKMKE 191 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 L I + + ++G N + IGT + Y G Sbjct: 192 MLEFALFTIDFAKTQVFPKYLDAVASLGVINTGF--IGTVDDHGALNLY---------DG 240 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + L+ P G+ ++ D + L + E V+ Y G+ P+ + ++ Sbjct: 241 KIRLMKPDGSFVDFDPQDYL-------DYLGEHVEPHSY-------GKFPYARCWNEGFS 286 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 + PR LAR +A ++ Sbjct: 287 LDPL--------------------QPR---GIYRANTLARINVADKMATPRAQAELEEFR 323 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 P TL R E +A + + Sbjct: 324 EKFGRPAQF---TLLHHWARLIEEVYACEHAIELLED----------PEITDPNVRAKVE 370 Query: 496 PTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 P RGVG EAPRG L H G + +V TT N P A L+ Sbjct: 371 PKAGRGVGCLEAPRGTLIHDYTTDSAGMVTKANMIVGTTHNLGPISLSVNQAA--RTLIQ 428 Query: 555 TKMAIPEQPLEILRTLHSFDP 575 + +I + ++DP Sbjct: 429 RGVVDETILNKIEMAVRAYDP 449 >UniRef50_C8QXK0 Nickel-dependent hydrogenase large subunit n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXK0_9DELT Length = 496 Score = 264 bits (674), Expect = 8e-69, Method: Composition-based stats. Identities = 110/602 (18%), Positives = 176/602 (29%), Gaps = 141/602 (23%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + + +DP+TRIEGH R + ++D+ ++ + T RG E GR + + R Sbjct: 2 PKTITIDPVTRIEGHARITITLDDRGLVEDCRLHVTQLRGFEAFCVGRPLAEMPSLTART 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 CG+C H LAS A ++ + +++P A +R ++ H + F+ LA D + + Sbjct: 62 CGICPVSHLLASAKACDELLAVRIPPAAVRLRQLLNYGQLVQSHALSFFHLASPDLLLGM 121 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 DA A Sbjct: 122 DAAPEQRNIFGLAAARPE------------------------------------------ 139 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNME 255 E + +R ++ GK HP+W+V G E+GA A + Sbjct: 140 ---------VAKEGIALRRFGQQLIERLAGKRIHPDWVVPGGVSRPLSRENGAAIAAELP 190 Query: 256 RLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + + + F W + G Sbjct: 191 GMLQAAQNNLVLLQGVLENFTAEIAHFANFPSGWLALAGEAGQLEY-----------YDG 239 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 LL G + + + + QQ+ E + Y + P G+ Sbjct: 240 PLRLLDQQGEELFSEADPLRY-----QQQLAEQSEADSYLKSPYHRPQGPEAGL------ 288 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 VGPLAR A G E++ Sbjct: 289 --------------------------------YRVGPLARLNAARRCGTPLADEALAAFR 316 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 P + S+ R E K+Q T + Sbjct: 317 ELS--PQGPVTSSFHYHYARLIEIIHGLEKIQQLLAD----------DTIYDPRVRATAG 364 Query: 496 PTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 GVG EAPRG L H I + G+I ++ T N+ +G A A + Sbjct: 365 ANAPEGVGICEAPRGTLIHHYRIDEQGRISAVNMMIATGHNSLAI-QRGLKQAARAFING 423 Query: 555 TKMAIPE-------------------QPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 E I L +DPCL+CSTH L G ++V+ Sbjct: 424 NGENDGESGKRAESREIAENKEIREGLLNRIEAVLRCYDPCLSCSTHAL---GQMPLAVE 480 Query: 596 VR 597 +R Sbjct: 481 LR 482 >UniRef50_D2REQ2 Nickel-dependent hydrogenase large subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2REQ2_ARCPR Length = 489 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 111/592 (18%), Positives = 188/592 (31%), Gaps = 122/592 (20%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ ++P+TR+EGH + + ++D+ + +A FRG E L+G + V IC Sbjct: 5 KKIEIEPMTRLEGHGKIAIFLDDKGNVADAFYQIVEFRGYETFLRGLPIEEVPRTVSTIC 64 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 GVC VH AS A + G++ + A IR + L + DH Y L D++ ++ Sbjct: 65 GVCRAVHHTASTKASDGVYGVEPTETAKKIRELYLNAHYVEDHCAILYALGLPDFVVGIE 124 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A A+ + + K+ LKK ++ G HP LP Sbjct: 125 ADPAERNLVGLIKKVGVDVGKTV----------LKKRFAAVKVLEMLGGKPIHPVAGLP- 173 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 GG I DE + A+ E Sbjct: 174 --------------------------------------GGWSKRITEDERKEIEALAKEM 195 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLS-YGAFPDIANDFG 315 + L + + D I L + + + D ++ Y + + G Sbjct: 196 VELGELTLQVFEDVILKNEKLLELITADYYRVVVNYLGTVDDAGKVNYYDGWQVGIDTKG 255 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + G +N + E V P+ + P++ Sbjct: 256 NEVFRFKGKDYLN---------------YIAERV--------------VPWSYVKMPYFK 286 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 KG YS VGPLAR I E+ ++M Sbjct: 287 QLGWKG----FVDGEGTSLYS-------------VGPLARCNIGD-MNTPKAKEAQEKMF 328 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 L I + RA E AA ++ ++ Sbjct: 329 DVLK--ERPIHYIMAYHWARAVELLNAAERVLELAQD----------PEITSPDVRAELG 376 Query: 496 PTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 GVG EAPRG L H +G + +V TT N +P + + A + + Sbjct: 377 EVTGEGVGIIEAPRGTLIHHYKTDENGIVTDANLIVATTHNHAPINIAIKK-AAQHFIQE 435 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACSTH-----------VLGDDGSELISVQ 595 K + + +D C AC++H V +G + +++ Sbjct: 436 NKEINDKLLNYVEIAYRPYDICQACASHALPGRYPLEVLVYDSEGELIKTIR 487 >UniRef50_Q58592 F420-non-reducing hydrogenase vhu subunit A n=22 Tax=Methanococcales RepID=VHUA_METJA Length = 418 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 94/532 (17%), Positives = 162/532 (30%), Gaps = 121/532 (22%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++V++P++R+EGH + + +++ + T RG E + GR + V RICG Sbjct: 3 KIVIEPLSRLEGHGKVTITLDENGKPKDVKLHITALRGFEQFVVGRPAEEVPRIVPRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H LASV AI+ A G+++P+ A +R +M H H +HFY LA D++ Sbjct: 63 ICQTAHHLASVKAIDAAWGVEIPEPAKKLRELMHIGNMIHSHALHFYFLAAPDFV----- 117 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 L ++ G + K Sbjct: 118 ----------LGPDADPAIRNIVGVIDKAPDVAK-------------------------- 141 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 +A+ ++ KI GGK HP + G +E + +++ Sbjct: 142 ----------QAIALRKFGQKIVEAVGGKAIHPVTGIPGGQAKRLTEEERDELLKDADQM 191 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 +N + +G + + + Sbjct: 192 IEYAKNGVELIKQLNEQYMEQIKTLGVIDTYYLGLVKDGKHNFY------------DDTL 239 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 L P G ++ EF + Y + V P++ + P+Y Sbjct: 240 RFLSPDG------------------KEKVEFKPEEYLNYIGEYVV--PYNYVKHPYY--- 276 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 K + VGPLA + E + Sbjct: 277 ---------------------KKVGYPEGVYRVGPLAMLNVCDEMETPLAEEYRKEFLEI 315 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 P + +L R E A K + + +++ + P Sbjct: 316 FGFPANQ---SLAYNHARLIELVEACEKAKILLED----------NDITSDDIKADVEPK 362 Query: 498 ECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAY 548 GVG APRG L H +G + +V TT N + Q A Sbjct: 363 AGNGVGVVYAPRGVLIHNYETDENGIVVKANMIVATTHNVPTMEKAIQQAAQ 414 >UniRef50_A8UUB0 Hydrogenase large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUB0_9AQUI Length = 448 Score = 262 bits (668), Expect = 3e-68, Method: Composition-based stats. Identities = 109/566 (19%), Positives = 187/566 (33%), Gaps = 120/566 (21%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG + ++ + + +A C +RG E +L+G+ DA V R+CG Sbjct: 2 KIERKVLNRVEGEIELKL-LWKSGRVDDAFLCAMDYRGFERLLKGKPFLDALVIVPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H +A + I+ + Sbjct: 61 ICGHAH-----------------------------------------LMACVKAIEDAYS 79 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + P + S+ A + +QN L+ F I + Y Sbjct: 80 SEGYPVQLSDKALEIRKLTLMCEM----LQNHLRWFYMYLLPDIVKLEPSIAELY----- 130 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + ++EAL +K+ A+FGG+ PH ++ V G + + +ERL Sbjct: 131 -EPLRGRAWVEALRASNMPIKVIALFGGQWPHTSYAVPGGVVCDPTGYELSQAELFLERL 189 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 ++ + + + L++ G G F ++A + Sbjct: 190 KTF------FESWLLGMPLEEYLSLK---------GRNYLKDIRGDLGRFTEVAIEHNLH 234 Query: 318 SLLMP-GGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 + G+ + + V ++ Sbjct: 235 EEGRSYDRFITGGELKPLFRSGFFTREGVS--------------------------PFDA 268 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 V +D Y+W KA R+ G E GPLAR L++ ++ Sbjct: 269 DKVSENDEFTFFRRNGSAYTWSKAARYSGLPCETGPLARQLVSGNR-------------V 315 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 +L S L R++ R EA + Q ++ L S + Sbjct: 316 IGSLFRRFGSSVLVRVVARMDEAVRLFTEAQRTLHRI-------KLDEPSWNRPSVDEKV 368 Query: 497 TECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 RGVG EA RG L H I G+I Y + PT WN PRD + +G E AL+ Sbjct: 369 FSGRGVGVVEAARGTLIHELEIEGGRIRSYNIITPTVWNLGPRDAEH-LGVAERALLGL- 426 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTH 582 + L+ + SFD C C+TH Sbjct: 427 ----DSELKAEIVVRSFDVCSVCTTH 448 >UniRef50_A8EUR7 Ni/Fe-dependent hydrogenase, large subunit n=1 Tax=Arcobacter butzleri RM4018 RepID=A8EUR7_ARCB4 Length = 449 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 115/569 (20%), Positives = 193/569 (33%), Gaps = 128/569 (22%) Query: 20 VVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVC 79 V+ + RIEG + + + +I + + FRG E IL+ + P DA + RICG+C Sbjct: 3 TVNLVERIEGEAKLNCSWKNGIIIDSRID-FLNFRGFEYILEDKSPLDALVYTPRICGIC 61 Query: 80 TGVHALASVYAIEDAI-----GIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 H A+V +E A +++ A ++R I L H+ F Sbjct: 62 GQAHLNAAVEVLEKAYENIDEKLEITPKAKLLRQIGLNIEMIDSHIKWF----------- 110 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK-KFVEGGQLGIFRNGYWGHPQYK 193 Y F + + +K + + W Sbjct: 111 ---------------------------YMFILPDIIKLNSNDLNIYEPLKGKKW------ 137 Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LEA E +K A+ G+ PH ++++ G + + +N Sbjct: 138 -------------LEACKVASETIKALAIIAGQWPHSSYMIPGGVMSDPTK----MDLIN 180 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 M+ N +Q I D I N + + L+ + +IG L F D+A Sbjct: 181 MQ--NYLQIAINFFEDSIVNTSLDNYLSFTSVDNF-EKIGGDLK--------LFKDLAFK 229 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + ++ I+ N+ + + + I + Sbjct: 230 YELQNYGKSYNRFISLSETNLFKKGRFSSKVI----------------NKIDLSKILENS 273 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 + + G + ++++W K + E GPLAR +I+ K ++ D Sbjct: 274 DSTFTLSG--------DNTQKHTWSKNVTYDDAFFETGPLARAIISNRKFIKDIHKNFD- 324 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 S R+L R E + + K+ T + S K + Sbjct: 325 ------------DSAFTRVLARLDELAFLLEDTKNLISKVNTKEASFIKPKISLNKIDKV 372 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 V EA RG+L H I GKI LY + PT WN P + K Q G + A++ Sbjct: 373 ------EAVSAVEATRGSLYHKIDIEKGKIKLYDVITPTVWNLGPSNKKEQ-GIAQKAII 425 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTH 582 T + L SFD C C+TH Sbjct: 426 GTSSIDIAKI-----ILRSFDVCSVCTTH 449 >UniRef50_B5YFX0 F420-non-reducing hydrogenase subunit A, selenocysteine-containing n=2 Tax=Bacteria RepID=B5YFX0_THEYD Length = 506 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 169/584 (28%), Gaps = 135/584 (23%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 +++ ++P+TR+EGH + + +++Q + NA F G E L G + V Sbjct: 17 GMKKIEINPMTRLEGHGKITIFLDEQGNVDNAFMQVVEFMGYEKFLIGMPIEEVPRTVST 76 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICGV GVH ASV A + G++ A IR + + DH Y L D++ Sbjct: 77 ICGVURGVHYTASVKAADAVYGVEPTPTAKKIRELFYNAHYVEDHTGILYALGFPDFVCG 136 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 A A+ + + + K Sbjct: 137 PTASPAERNLVGLVLKVGADVGKLV----------------------------------- 161 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVN 253 L + VKI + G+ HP + GG I +E + A Sbjct: 162 ---------------LKKRYSAVKIFELTSGRPSHPVAALPGGWSKRITEEERKEILACA 206 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 + + L + + + + L G + + Sbjct: 207 DDCIELAKLTLDVFDKVVLQ----------------------NKEYMALVTGDVYKVVTN 244 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPW 373 + V E +Y V Sbjct: 245 Y---------------------------IGTVDENDKVTYYDGTQKIVDTK--------G 269 Query: 374 YNPGDVKGSDTNIQQLNEQERYSWIKAPR-----WRGNA-------MEVGPLARTLIAYH 421 G KG +S+ KAP W G VGPLAR + Sbjct: 270 NELGRFKGIQYLDYIAERTLPWSYQKAPYLKKLGWNGLVDGDGTSIYSVGPLARFNVGSG 329 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 E+ ++M++A + TL RA E AA ++ Sbjct: 330 FDTPLAQEAYEKMLAAFG--GKPVHHTLAYHWTRAIELMHAAETVKKIASD--------- 378 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRD 540 + + GVG EA RG L H D G + +V TT N P + Sbjct: 379 -ESITDPNVRQELGTPVGEGVGIVEAARGVLIHHYKTDDKGIVTDANLIVATTHNKGPMN 437 Query: 541 PKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + A + + + +D C ACSTH L Sbjct: 438 IAVKRAA--QSFIKNGKVDEGILNLVEIAYRPYDLCFACSTHTL 479 >UniRef50_P80489 Coenzyme F420 hydrogenase subunit alpha n=11 Tax=Methanomicrobia RepID=FRHA_METBF Length = 456 Score = 253 bits (645), Expect = 2e-65, Method: Composition-based stats. Identities = 107/586 (18%), Positives = 190/586 (32%), Gaps = 142/586 (24%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVER 74 + + + P TR+EGH + + ++DQ ++ T RG+E + G+ R Sbjct: 2 TKVVEISPTTRLEGHSKLTLKVDDQGIVERGDWLSITPVRGIEKLAIGKTMEQVPKIASR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 +CG+C H LAS A+E +IG ++P +A ++R I+ A +H L Sbjct: 62 VCGICPIAHTLASTEAMEASIGCEIPTDAKLLRTILHAANR-----IHSIALH------- 109 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + I + Y + K Sbjct: 110 -------------------------------------------NILILPDFYIPGTEKKF 126 Query: 195 PPEANLMGFAHYL-EALDFQREIVKIHAVFGGKNPHPN-WIVGGMPCAINIDESGAVGAV 252 AN + + + I A+ GG+ HP+ +GGM ++ + + Sbjct: 127 NLFANEQPARSVMARIVRIREIAQTIGAIAGGEAIHPSNPRIGGMYYNVSPRAKQKMADL 186 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAN 312 E L LV + D I N+ + + + P + G ++ V++ + ++ Sbjct: 187 AKEGLVLVHEQMEFMFDVIRNMQNREFVEVAGKQIPLPKKL-GYHNQGVMATASMYGSSS 245 Query: 313 DFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR---YPNDQVGRHPFDGI 369 + D + +E WY + + +P G Sbjct: 246 LDDNPTW---------------------DFTRWKETRPWDWYMGEVTIDLEDPSYPIGGT 284 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 T + T + P + G +EVGP AR Sbjct: 285 TKIGTKANPQMEACTGV--------------PTYDGQPVEVGPRARLA------------ 318 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 + T + + R E + D L T+ K + Sbjct: 319 ---------TFKNFDEKGTFAQHIARQMEYPDCCYTILRCLDNLNTSGKVLADHIPQGD- 368 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYE 549 G EAPRG+ H A ++DGK+ Y +VPTTWN ++ Sbjct: 369 --------GSMGWAANEAPRGSNIHLARVKDGKVLWYDMLVPTTWNFPTCSRALTGAPWQ 420 Query: 550 AALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 A + ++DPC++C+TH++ + E I Q Sbjct: 421 IA---------------EMVVRAYDPCVSCATHMIVVNEEEKIVTQ 451 >UniRef50_O66988 Hydrogenase large subunit n=1 Tax=Aquifex aeolicus RepID=O66988_AQUAE Length = 416 Score = 244 bits (622), Expect = 8e-63, Method: Composition-based stats. Identities = 112/566 (19%), Positives = 183/566 (32%), Gaps = 154/566 (27%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ +TR+EG + + ++ VI +A RG+E +L+ R DA RICG Sbjct: 2 KIEKLVLTRVEGEASLNL-VWERGVIKDAKISFYSTRGIEKVLRERPFMDALVINPRICG 60 Query: 78 VCTGVHALASVYAIEDAIGI-KVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C H +A+V AIE+AIGI ++P+ A I R + T +H+ FY D++ + Sbjct: 61 ICGHAHLIATVRAIENAIGIKEIPEKAKITRLVTQITEMVQNHVKWFYLFVMPDFLKFKE 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 +L E + + ++ G W H Y +P Sbjct: 121 SLSQFEPFKGERWKRAVQFSSQIV-----------------KIIALFGGQWPHSSYAVP- 162 Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 GG+ + E + E Sbjct: 163 --------------------------------------GGITSNFSEREVLKALNLVKEG 184 Query: 257 LNLVQSIITRTAD-FINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFG 315 + ++ + F+N + L+IG+ + G G + Sbjct: 185 KTFFEKNVSEDLELFLNLCEEFNLLSIGKAYNRFLSGG-----------GLAYCFNPSYK 233 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYN 375 + V + + VQE + + +P P+ Sbjct: 234 KGK----------------GKVCKFNVRYVQELEAADYSKA-------NPVRYKGLPY-- 268 Query: 376 PGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMM 435 E GPLAR LI+ + Sbjct: 269 ---------------------------------ETGPLARELISKNPL------------ 283 Query: 436 SALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATW 495 L L + S R+ R E + L+ +LM +L+ + WE + Sbjct: 284 -VLKLYKNYGDSYAVRVAARLAEIKDLLEILEKLLKELMNHLEE------PSCLWEDRSD 336 Query: 496 PTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G G EA RG L H I GKI Y+ + P+ WN PR K +G E A++ Sbjct: 337 -ESGEGFGVVEAARGTLIHRVVIEKGKIKDYKVITPSQWNLGPRCKK-YLGVAEKAIVGL 394 Query: 556 KMAIPEQPLEILRTLHSFDPCLACST 581 + L+ L SFD C C+T Sbjct: 395 -----DSELKAQMVLRSFDLCSVCTT 415 >UniRef50_Q2BN59 Nickel-dependent hydrogenase, large subunit n=1 Tax=Neptuniibacter caesariensis RepID=Q2BN59_9GAMM Length = 386 Score = 234 bits (596), Expect = 8e-60, Method: Composition-based stats. Identities = 104/456 (22%), Positives = 170/456 (37%), Gaps = 76/456 (16%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R+VV P R+EG + +++ + Q +T A +FRG E I+QG++P DA + RICG Sbjct: 3 RIVVGPFNRVEGDLEIKLDTD-QGQVTAARVNSPLFRGFERIMQGQEPMDALVYTPRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ ++AS A+ D + + +P N + N++LA D L HFY D+ + + Sbjct: 62 ICSVSQSVASARALADLMDLDMPLNGQLATNLVLANENMTDLLTHFYLFFMPDFARGIYS 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + S+ S K+ G V L E L G W H P Sbjct: 122 NEPW-------FDSVESRFKAQKGSAAKVM--LPARSEFLHLMGIMAGKWPHSLSLQPGG 172 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + E + + ++ +++ +G+ N + Sbjct: 173 SAKPI------------EAQERIRLLAILASFRKFLEH-TLFGDDLEAIAELGSWNELQN 219 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 + +DF + + D L + G + LSYG +PD Sbjct: 220 WREKHDWQ-HSDFTRFLHLSDQLHLAS---------MGRATDQFLSYGNYPD-------- 261 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 P G + + V D + + E + ++W + N V HP G T+P Sbjct: 262 ----PQGGLFKAGASFAGAVTDFDQKGITEDLAYSWMQSVNGPV--HPAAGNTEPS---- 311 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 L+ + YSW KAPR MEVG LAR LI G + V R + Sbjct: 312 -----------LDNEAAYSWCKAPRLNRQVMEVGALARQLIN---GHPLAADLVSRNGA- 356 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 + RI+ R A++ D+ Sbjct: 357 ---------NVESRIIARLLRARY-CDPADAKLDQA 382 >UniRef50_A4YFB5 Ni Fe-hydrogenase I large subunit-like protein n=2 Tax=Sulfolobaceae RepID=A4YFB5_METS5 Length = 745 Score = 226 bits (576), Expect = 2e-57, Method: Composition-based stats. Identities = 136/731 (18%), Positives = 224/731 (30%), Gaps = 159/731 (21%) Query: 4 QYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQ-NVITNAVSCGTMFRGLEIILQG 62 + Y + + ++++PI RI+ + +V + N +T+A + MFRG EI ++ Sbjct: 2 ASSSPYYFTFDWTKPVLIEPIVRIKPELGIQVTYDSSSNRVTDAYAAAGMFRGFEIFMRN 61 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA-TLWCHDHLV 121 + D R CG+C H A E A G P + I+ +D Sbjct: 62 KPGPDVIMLSSRECGICGEHHQFIERIAQEMAQGGNAPPPLGLETIILANDAAMTYDATA 121 Query: 122 HFYQLAGMDWIDVLDALKAD-PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 H L G DW + + P + E+AQ V + F G Sbjct: 122 HLTALGGPDWSSLFFKVAGYFPSQIYEIAQQTP---------LSKVAQESQAFPMGAPTQ 172 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 + G L + A++LE R + + ++ + PHP +V G Sbjct: 173 LEMAGVKLKTVSDLMDALVPIIGAYFLEGAYSWRILHEAELLYYLRVPHPITMVPGGIGV 232 Query: 241 INI--------DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEI 292 A M+++ + + + AD+ N I ++K + Sbjct: 233 PATVENLQRYFQRMVDGTAWLMKQMAVYEYLTLFLADYNNTFGIQ-----ALYDKLNGTL 287 Query: 293 G---TGLSDKCVLSYG---------------------AFPDIANDFGEKSLLMPGGAVIN 328 G G +SYG + +G ++ PG + Sbjct: 288 GFAEEGNRPGNFVSYGQSDVSEAPSVTPSSTSVMPYDGTYENMGAWGRARVVKPGLVIQP 347 Query: 329 GDFNNVLPV--DLVDPQ-QVQEFVDHAWYRYPNDQVG------------RHPFDGITDPW 373 + V L+D ++EFV+ ++Y + G + Sbjct: 348 NSNSPPQLVTNSLIDINLGIREFVESSFYTPWYENGSFNSEVPSSVSGIEEDPIGNKVSY 407 Query: 374 YNPGDV---KGSDTNIQQLNEQERYSWIKAPR---WRGNA--------MEVGPLARTLIA 419 Y+P + YSW +PR ++ + +E P+A Sbjct: 408 YHPWRKWTMPNPQPRPVPMAYPAPYSWAVSPRIVPYQNHKPITNLFYNVEADPMAVMYAQ 467 Query: 420 ----------YHKGDAATVESVD---RMMSALNLP------------------------- 441 Y + E M + LP Sbjct: 468 VLQPQAPTPIYTSSYPSGFEVSYNSNEMSATFYLPTVNSPRISLPPEFQQGSEIEFKYVA 527 Query: 442 ------LSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK----WE 491 + + + R+ RA EA + + +T LK G +S ++ Sbjct: 528 PYALSGGKIVTNAIERMRARAFEAGLDGMGMWIAWMSAITYLKKGMTQVSSMPPSSWTYK 587 Query: 492 PATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLY-----QCVVPTTWNASPR------- 539 T GVG EAPRGA H G Q + PTT N+ PR Sbjct: 588 SNTNTGVALGVGMKEAPRGAQYHSEVFATGTGVNVPAINPQQMQPTTVNSGPRVKNSYDD 647 Query: 540 --------DPKGQIGAYEAALMNTKMAI-PEQP------------LEILRTLHSFDPCLA 578 P G +E LM P P E +TL SFDPC Sbjct: 648 GIQTIKPASPTHGAGTFEEVLMGNPDYNMPGTPRLTVIPTEQWDGFEFAQTLRSFDPCFV 707 Query: 579 CSTHVLGDDGS 589 C H++ +G Sbjct: 708 CGVHMVLPNGR 718 >UniRef50_B4U5P5 Nickel-dependent hydrogenase large subunit n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U5P5_HYDS0 Length = 439 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 103/570 (18%), Positives = 178/570 (31%), Gaps = 143/570 (25%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG + ++ + + A GT R IL+ + D+ + R+CG Sbjct: 2 KITKTILNRLEGEVELKLEYSKGKIAK-AHILGTSNRDFSSILKAKPYLDSIILIPRVCG 60 Query: 78 VCTGVHALASVYAIEDAIGIKVPD-----NANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H +ASV AIEDA + D A+++R I L + +H+ FY Sbjct: 61 ICGHAHLMASVKAIEDAYKNECSDFHLSTKASLVRYITLLSEMIQNHIRWFYAYF----- 115 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 P ++ + L F W Sbjct: 116 -----------------------MSEIPKLDRNMVDYL----------PFDGEKW----- 137 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGA 251 + +KI A+FGG+ PH ++ V GG+ E A + Sbjct: 138 --------------RRGIAISNYPIKIIALFGGQWPHNSYAVPGGITSDFTYYELNAAKS 183 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 + ++ +I + I L+ ++ + + D LS F Sbjct: 184 -------FCKELLKSIETYIIGISIDKYLSF-SKDELLNHKEGDIGDFIRLSS-TFDFFH 234 Query: 312 NDFGEKSLLMPGGA--VINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 K L G ++ + D + + Sbjct: 235 KGIAYKRFLTGGSIKGYVDAAVFENGIKESFDVKNI------------------------ 270 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVE 429 + +E ++ I + E GPLAR + + + Sbjct: 271 ----------------DTKEHEFKKIKEITGAVYNKKRFETGPLARKINSSNSL------ 308 Query: 430 SVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEK 489 L L S R++ R E ++ D + ++ S K Sbjct: 309 -------FLELLEEFGDSLFLRVMARVDEIVSLTLLIKDALDAI-------DIRKPSYIK 354 Query: 490 WEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYE 549 P P +GVG EA RG L H I +G + Y+ V PT WN D + Sbjct: 355 P-PIKEPFTGKGVGIVEAARGTLIHEINIENGFVKDYKIVTPTLWNLGNYDEDM--SPAQ 411 Query: 550 AALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 +++ +E +L SFD C +C Sbjct: 412 KSIVGLSSD-----VEAYLSLRSFDVCASC 436 >UniRef50_UPI0001912BA3 hydrogenase 2 large subunit n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912BA3 Length = 229 Score = 224 bits (570), Expect = 9e-57, Method: Composition-based stats. Identities = 89/243 (36%), Positives = 137/243 (56%), Gaps = 21/243 (8%) Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 + + P++G T P Y+ ++ +YSW+K+P + G +EVGPLA L Sbjct: 1 EAPQAPWEGTTIPAYDGW------------SDDGKYSWVKSPTFYGKTVEVGPLANMLCK 48 Query: 420 YHKGDAATVESVDRM------MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 G +T ++ + ++ L ++ + STLGRI+ R LQ ++ L Sbjct: 49 LAAGRESTQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNVLQDQYNAL 108 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTT 533 + N+ G+ T + E +GVGF EAPRG L HW I+DG I YQ VVP+T Sbjct: 109 IVNIGKGDYTTFVKPNIQAT---GEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPST 165 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELIS 593 WN+ PR+ +G YE +L+ T +A P +PLE++RT+HSFDPC+AC+ HV+ DG+E++S Sbjct: 166 WNSGPRNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVS 225 Query: 594 VQV 596 V+V Sbjct: 226 VKV 228 >UniRef50_A6QAV5 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QAV5_SULNB Length = 433 Score = 220 bits (561), Expect = 9e-56, Method: Composition-based stats. Identities = 103/566 (18%), Positives = 183/566 (32%), Gaps = 139/566 (24%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R ++ I +IEG + + ++ ++ G +RG+E IL G+DPRDA R+C Sbjct: 3 RTVIRKLIEKIEGEAELDYTFANGSIEDVRINFGF-YRGIEEILVGKDPRDALVITPRVC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C H + +A + ++ Sbjct: 62 GICN-----------------------------------------HAHLIAAVRALENGY 80 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A S A+++ + S L+ ++ + IF N L Sbjct: 81 ASAGWEVVLSPKAKAIREFTLSC--------ELLQNHIKWMYMTIFPN---------LER 123 Query: 197 EANLMGFAHY-LEALDFQREIVKIHAVFGGKNPHPNWIV-GGMPCAINIDESGAVGAVNM 254 + +Y ++A F I K A+F G+ PH ++ V GG+ C + ++ Sbjct: 124 YLKIESSENYAVKASYFSTTITKALAIFAGQWPHSSYAVPGGVTCDPTQLDIIQAQSLLE 183 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 E + + ++T + L+I + G +L + Sbjct: 184 ECVRFFEQMLT-------GCTLEAYLSIESVSSLHHIEGDFGKLLHLLGSNGMAKKGQSY 236 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 ++ + + V VD + V E Sbjct: 237 DRF-IVFADSPLSPAGKSIATSVSKVDTKYVVE--------------------------- 268 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 +++ S KA ++ EVGPLAR +++ Sbjct: 269 ----------------SEQKGSMAKAVSYKNRMYEVGPLARGMVSKE------------- 299 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 NL S + R+ R HE K + + + + L+ Sbjct: 300 PIVKNLHKRYKDSMMTRVFARIHEVAQLLEKNREMLKSIRVDEPSCTLSDTLKLY----- 354 Query: 495 WPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMN 554 E G G EA RG+L H + +GKI Y+ + PT WN S D K + G A++ Sbjct: 355 ---EFEGTGTVEAARGSLIHRTTVSNGKIANYEIITPTQWNLSHGDEKEK-GIAVKAMVG 410 Query: 555 TKMAIPEQPLEILRTLHSFDPCLACS 580 + + E +FD C C+ Sbjct: 411 S-----QSMEEADFIFRTFDVCSVCT 431 >UniRef50_O28899 Methylviologen-reducing hydrogenase, subunit alpha (VhuA) n=2 Tax=Archaeoglobaceae RepID=O28899_ARCFU Length = 458 Score = 217 bits (552), Expect = 1e-54, Method: Composition-based stats. Identities = 107/570 (18%), Positives = 178/570 (31%), Gaps = 150/570 (26%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ ++P++RIEGH + + ++ + NA T FRG E IL G + V ICG Sbjct: 2 KIEINPVSRIEGHAKVTIFLDSSGKVENAFFQATEFRGYEKILSGLPMEEVPRVVSTICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C +H A++ A + G++ D A I+R ++L + D H L + D L Sbjct: 62 ICRAIHFTAALKAADQVFGVEASDAAKIVREMLLCAHFIED---HTLSLLALALPDFLSP 118 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + ++ ++ E G+ + + GY Sbjct: 119 EE------------------------RNIFGVIRNLGELGRELLRKRGY----------- 143 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMER 256 V+I + GG+N HP + GG A +E G + + E Sbjct: 144 ------------------AVRILQILGGRNIHPVTALPGGWAKAPTDEELGLIERYSREL 185 Query: 257 LNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGE 316 L+L + + + ++G GL + A G Sbjct: 186 LDL-------------------GYRMVEVLEAALDMGDGLELR------AATLGTEKKGL 220 Query: 317 KSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNP 376 +L V + + VL + + +W P Sbjct: 221 VNLYDGEQVVKDEEGKEVLRFSGKEYADIITEKSLSW-------------SYSKLTEIKP 267 Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMS 436 K VGPLAR + E V Sbjct: 268 LGEKL--------------------------YVVGPLARL--KTAELTPKASEIVKTYGV 299 Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 + + L RA E +AA +L + + Sbjct: 300 S--------NNLLYNHFARAVEIIYAAERLLELSQSYRGG------------RIQNEPQK 339 Query: 497 TECRGVGFTEAPRGALGHWA-AIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 GVG EAPRG L H G + +V TT N R +G +T Sbjct: 340 VAGEGVGIVEAPRGTLIHHYWTDEKGIVRGSNLIVATTHNV--RAINHVVGKVAERASDT 397 Query: 556 KMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 + ++ + +FDPC+AC+TH + Sbjct: 398 R----NLAEKVEVAIRAFDPCMACATHAVN 423 >UniRef50_Q30QL7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Sulfurimonas denitrificans DSM 1251 RepID=Q30QL7_SULDN Length = 417 Score = 210 bits (534), Expect = 1e-52, Method: Composition-based stats. Identities = 104/563 (18%), Positives = 170/563 (30%), Gaps = 148/563 (26%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 + I +IEG + N + + V R +E IL+G+ DA R+CG+C Sbjct: 2 IKIIEKIEGEAKLNFNFKENKIDFVDVE-FMSTRNIENILKGKRAFDALVINPRVCGICG 60 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 H + +A + ++ Sbjct: 61 -----------------------------------------HAHLMATVQALESCY---- 75 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 D S+ A+ + + F +QN K F L + P Sbjct: 76 DNLILSDKAKIIRELTLN----FELIQNHFKWFY--LTLYPLFGKKQQILKATYP----- 124 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMERLNL 259 + + K AV GG+ PH ++ IVGG+ C I + V + L Sbjct: 125 ------------SQLMSKAIAVIGGQYPHTSYAIVGGVACEITEIDLIKVQHYIAQTLKF 172 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 V+ + + + A ++ +EI + + +L YG D FGE S Sbjct: 173 VEQNLLKVESEVFLKTED---ANSLYDGDLTEILDEIKNSELLGYGKSYDRFISFGENSF 229 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 G +V +N+ VD+ + Q Sbjct: 230 FKKGKSVKTKVTHNISLVDVKESQITS--------------------------------- 256 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 S+ K ++ EVGPL+R +I ++ Sbjct: 257 ----------------SFAKNVSFKDKYYEVGPLSRAMINKTPLI-------------ID 287 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 + S RIL R +E + K+ +L+ S + Sbjct: 288 VHKKYGDSIFSRILARIYEISQLLEHSRGLIKKI-------DLSQPSYIEPSIDISKLSG 340 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G EA RG L H + G I Y+ + PT WN S + G + A++ Sbjct: 341 SGYSAVEAARGTLIHRVELESGIIKNYEIITPTQWNLS-GGTRENHGVSQRAMVGLSDVK 399 Query: 560 PEQPLEILRTLHSFDPCLACSTH 582 SFD C C+TH Sbjct: 400 I-----AELVFKSFDVCSVCTTH 417 >UniRef50_A6Q3L3 Ni-Fe hydrogenase, large subunit HupV n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q3L3_NITSB Length = 403 Score = 207 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 169/562 (30%), Gaps = 161/562 (28%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++ + +IEG E D+ IT+ +RG+E IL+GRDP DA RICG+C Sbjct: 3 IELLEKIEGEAFLEFQ-KDKQTITDVKVLFPHYRGIEEILRGRDPWDALVINPRICGICG 61 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 H A+ +E + + A IR I +H+ FY Sbjct: 62 HAHLQATAMVLESIFQVNITQKAKNIREITRFCEIIQNHIKWFYL--------------- 106 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 + + P F V + + V +L +G W H Y Sbjct: 107 -----------VIFHELNIPYDFTKVHHLI---VTINKLLALFSGQWPHSSYC------- 145 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLV 260 +VGG+ C E + + + Sbjct: 146 --------------------------------VVGGVTCDPTSLEIHQAKTLIQQIRDQF 173 Query: 261 QSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLL 320 +I + D +N ++ L +K +L G D F + S + Sbjct: 174 IQLIGKLHDPLNLT------------NDLQKLYRTLQEKELLLVGKSHDRFITFSQDSHV 221 Query: 321 MPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 + L + ++E Y Sbjct: 222 SNIKLLHGQKRKTKLTL-------IEENEQKRSYA------------------------- 249 Query: 381 GSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNL 440 + + +Y E GPLAR + + D + + Sbjct: 250 ------KNVTYNGKY------------YETGPLARLM-----------QQTDPFVRYFHR 280 Query: 441 PLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECR 500 S RI+ R +E +K++ +L +L+ S + + Sbjct: 281 RFK--DSITTRIIARIYEVSLL-------IEKIIDHLATIDLSQPSV----VESKMQDGT 327 Query: 501 GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 + EA RG+L H A I GKI+ Y + PT WN S + + A++ T Sbjct: 328 AIISIEAARGSLIHQATIHQGKIETYNFITPTQWNLSNGTSQ-NPSVIQKAIVGTSDEKI 386 Query: 561 EQPLEILRTLHSFDPCLACSTH 582 SFD C C+TH Sbjct: 387 AN-----LIFRSFDICSVCTTH 403 >UniRef50_B7XKR7 Uptake hydrogenase large subunit (Fragment) n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR7_ENTBH Length = 276 Score = 203 bits (517), Expect = 1e-50, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 135/285 (47%), Gaps = 24/285 (8%) Query: 275 MIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV 334 MIPD I G G +++G F + + + MP G V Sbjct: 1 MIPDTKIIAPAYTDALHFGKGCGR--YVAWGVFERPSMEPTD--RYMPAGVVW-----EN 51 Query: 335 LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQ---QLNE 391 L V D ++E+V H+WY +P +G+TDP Y V GS+ Sbjct: 52 LNVTDPDEALIKEYVGHSWY---VGDSDLNPVEGVTDPEYTSYYVPGSEHEENGHMIGTV 108 Query: 392 QERYSWIKAPRWRGNAMEVGPLARTLIAYHKG---DAATVESVDRMMSALNLPLSGIQST 448 +RY+W K P + G ME GP +R L AY +G + V++++ + + L L + +QST Sbjct: 109 NDRYTWSKGPSYDGKCMEAGPFSRVLAAYLRGGEQNKFIVDNLNALCADLGLTIPDLQST 168 Query: 449 LGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 LGR+ R E + A + + D+L+ +K G+ + RG G EAP Sbjct: 169 LGRVAARQVECLYVAELMVEWVDELIAAIKEGDSEYFRAPE------RLSGRGTGMWEAP 222 Query: 509 RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 RGAL H + +GKI+ YQ ++PTTWN +PR+ +G G E ALM Sbjct: 223 RGALLHTENVDNGKINAYQIIIPTTWNIAPRNAEGVRGPMEQALM 267 >UniRef50_Q57PA0 Putative hydrogenase-1 large subunit n=1 Tax=Salmonella enterica RepID=Q57PA0_SALCH Length = 267 Score = 202 bits (512), Expect = 4e-50, Method: Composition-based stats. Identities = 111/159 (69%), Positives = 126/159 (79%) Query: 439 NLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTE 498 LP + STLGR RA E+ WA LQYFFD+LM NLK+G+ ATA+ WEP TWPT Sbjct: 109 KLPKEALFSTLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTS 168 Query: 499 CRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 +GVGF+EAPRGALGHW I + KID YQCVVPTTWNA PRD KGQIGAYEAALM TK+A Sbjct: 169 AKGVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLA 228 Query: 559 IPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQVR 597 +P+QPLEILRTLHSFDPCLACSTHV+ + G EL+ VQVR Sbjct: 229 VPDQPLEILRTLHSFDPCLACSTHVIDNHGGELVRVQVR 267 Score = 158 bits (398), Expect = 6e-37, Method: Composition-based stats. Identities = 99/239 (41%), Positives = 131/239 (54%), Gaps = 32/239 (13%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M+ Y+TQG+T++N+GRR+VVDP+TRIEGHMRCEVNI+ NVITNAVS GTM+RGLE+IL Sbjct: 1 MAYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVITNAVSTGTMWRGLEVIL 60 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIM---------- 110 +GRDPRDAWAFVERICGVCTG HAL S+ A+E+A+GI +PDNAN IR + Sbjct: 61 KGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDNANCIRKKLPKEALFSTLG 120 Query: 111 ------LATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFF 164 L ++W + L +F + ++ LK+ T+ + P + P Sbjct: 121 RTAARALESVWAGNTLQYF-------FDRLMRNLKSGDTATANVTL---WEPDTWPTSAK 170 Query: 165 DVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP------PEANLMGFAHYLEALDFQREIV 217 V G N Q +P P + Y AL + V Sbjct: 171 GVGFSEAPRGALGHWIKIENQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAV 229 >UniRef50_B6BMW7 Nickel-dependent hydrogenase, large subunit n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BMW7_9PROT Length = 419 Score = 199 bits (505), Expect = 3e-49, Method: Composition-based stats. Identities = 96/563 (17%), Positives = 171/563 (30%), Gaps = 146/563 (25%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 ++ I +IEG + + + + + T R +E IL+G+ DA Sbjct: 2 IELIEKIEGEAKLNFSFAGEEIDFVDIEFMTA-RNIEKILEGKSALDALVINP------- 53 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKA 140 GI H + +A + ++ Sbjct: 54 ------------RVCGI----------------------CGHAHLIATVKALEDCY---- 75 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANL 200 + + S+ A+ + + F +QN K F + Sbjct: 76 ENIEISKKAEIIRELTLT----FELIQNHFKWFY--LTMRPLFGKKQ------------- 116 Query: 201 MGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINIDESGAVGAVNMERLNL 259 L+A + + K AVFGG+ PH ++ IVGG+ C I + + E + Sbjct: 117 ----EVLKATYPTQLMAKAIAVFGGQYPHTSYAIVGGVVCDITEIDIIKIKHYIEETIKF 172 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 ++ + + AD + ++ + + + N +I + K L +G D FGE S Sbjct: 173 FETNLVQ-ADTKDFLVCDNVDKVLKKNGDLPDILREIKKKKYLDHGKSYDRFIAFGENSY 231 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 G + + + V+E Sbjct: 232 FTK------GKSHKTITTHNISIDYVKE-------------------------------- 253 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 + S K ++ EVGPLAR +I + Sbjct: 254 -----------QDNLNSLAKNVTYKDKYYEVGPLARAMINKVPLVK-------------D 289 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 + RI+ R E + +KL +L+ S + Sbjct: 290 SHRRYGDNIFSRIIARVCEIPQLLNHSKELLEKL-------DLSEPSYIEPNIDISQINA 342 Query: 500 RGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 G EA RG+L H + +G I Y+ + PT WN + +G + A++ K Sbjct: 343 SGESAVEAARGSLIHKVELENGIIKNYEIITPTQWNLGN-GTRENLGVSQQAMVGLKDVK 401 Query: 560 PEQPLEILRTLHSFDPCLACSTH 582 +FD C C+TH Sbjct: 402 -----TAELVFKTFDVCSVCTTH 419 >UniRef50_A8V177 Hydrogenase large subunit (Fragment) n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V177_9AQUI Length = 360 Score = 198 bits (502), Expect = 6e-49, Method: Composition-based stats. Identities = 85/459 (18%), Positives = 147/459 (32%), Gaps = 113/459 (24%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 ++ + R+EG + ++ I ++ I +A FRG E IL+ + D R+CG Sbjct: 3 KIEKTVLNRVEGEIELKL-IWEKGKIKDAYIIAPNFRGFEFILENKPLLDTLVITPRVCG 61 Query: 78 VCTGVHALASVYAIEDA-----IGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 +C H +A+ A+E+ I+V A IIRNI L+ +HL FY D++ Sbjct: 62 ICGHAHLIATTNALENLYLENGYKIEVSQKAKIIRNITLSCEMIQNHLRWFYLFVIPDFL 121 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 AL+ +P + V+ K ++ G W H Y Sbjct: 122 KFNKALEDF-------------YPIKGKKWRKAVELSSKIV----KVIAIFAGQWPHTSY 164 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 +P GG+ C E Sbjct: 165 SVP---------------------------------------GGVMCEPTQTEI------ 179 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSY-GAFPDIA 311 +E +++V S++ + + + I + L+I + + L + F DI Sbjct: 180 -IEAISIVDSVLEYFEEDVIGMKIDEYLSITNLKEFLDKSEGDLKTIIEEAMKLGFKDIG 238 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 + + I+ D +V+E ++ Sbjct: 239 KAYDRFLTVCNINPFISEGITRRKKCS-FDINKVKEIETFSFLE---------------- 281 Query: 372 PWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESV 431 + + +YSW KAPR+ G E GPLAR + K Sbjct: 282 -------------KGKPKFSKRKYSWAKAPRYEGKPFETGPLARRINNEDKL-------- 320 Query: 432 DRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 LNL + + RI R E ++ + Sbjct: 321 -----FLNLVKTFKGYYIPRIWARVDEIGKLLLAVKEYL 354 >UniRef50_B6YU79 Cytosolic NiFe-hydrogenase, alpha subunit n=11 Tax=Thermococcaceae RepID=B6YU79_THEON Length = 429 Score = 184 bits (467), Expect = 8e-45, Method: Composition-based stats. Identities = 60/410 (14%), Positives = 129/410 (31%), Gaps = 41/410 (10%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 + N++ + EA+ +++ + AV+ + G ++ Sbjct: 35 KLNIIEGPRFFEAITIGKKLDEALAVYPRICSFCSAAHKLTAVEAAEKAVGFEVREEIQA 94 Query: 257 LNLVQSIITRTADFINNVMI---PDALA----IGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 L V I ++ + PD + + +K EI L K + S+ Sbjct: 95 LREVLYIGDMIESHALHLYLLVLPDYMGYSNPLKMLDKYKKEINIALDLKNLGSWMMDEL 154 Query: 310 IANDFGEKSLLMPG-GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPF-- 366 A +++++M G G + + + L + + E+ + + + P Sbjct: 155 GARAIHQENVVMGGFGKLPDKTTLEKMKKRLQEALPLAEYTFELFSKLEQYEEVEGPIIH 214 Query: 367 ------------DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRG-NAMEVGPL 413 G + + + +S+ K + G G + Sbjct: 215 MAVRPRGDVYGIYGDAISVSDGFEFPSEGYKKHMVERVVEHSFAKHSFYNGEKPFMTGAI 274 Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 +R + K E + L + L +A E + + D+ Sbjct: 275 SRVVNHADKLYGRAKELYESHKDLLRP-----TNPFANNLAQALELVYFMERGIDLIDEA 329 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTT 533 + + + GV TEAPRG L + ++DG++ + PT Sbjct: 330 LAKWP---------IRPRDEVDVKDGFGVSTTEAPRGILVYALEVKDGRVAYADIITPTA 380 Query: 534 WNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 +N + + + A + L + ++DPC++CS HV Sbjct: 381 FNLAMMEVHVR----MMAEKHYNDDPERLKLLAEMVVRAYDPCISCSVHV 426 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 85/252 (33%), Gaps = 4/252 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + VD I R+EG E+ + D V ++ R E I G+ +A A RIC Sbjct: 8 ITVDHIARVEGKGGVEIVVGDDGVKEVKLNIIEGPRFFEAITIGKKLDEALAVYPRICSF 67 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H L +V A E A+G +V + +R ++ H +H Y L D++ + L Sbjct: 68 CSAAHKLTAVEAAEKAVGFEVREEIQALREVLYIGDMIESHALHLYLLVLPDYMGYSNPL 127 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 K + E+ +L K+ + D E +G F + + Sbjct: 128 KMLDKYKKEINIAL--DLKNLGSWMMDELGARAIHQENVVMGGF-GKLPDKTTLEKMKKR 184 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 + ++ + + G H G I D Sbjct: 185 LQEALPLAEYTFELFSKL-EQYEEVEGPIIHMAVRPRGDVYGIYGDAISVSDGFEFPSEG 243 Query: 259 LVQSIITRTADF 270 + ++ R + Sbjct: 244 YKKHMVERVVEH 255 >UniRef50_B5YHQ8 Hydrogenase/sulfur reductase, alpha subunit n=2 Tax=Bacteria RepID=B5YHQ8_THEYD Length = 442 Score = 183 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 61/424 (14%), Positives = 115/424 (27%), Gaps = 53/424 (12%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM--------PCAINIDESGA 248 ++ + EA R I + PH + G+ D G Sbjct: 34 RLEIVESPRFFEAFLRGRSIYEA--------PHITCRICGICSCGHTLASIQAAEDALGI 85 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMI---PDALAIGQFNK------------------ 287 L + + I ++ + PD + + F Sbjct: 86 KPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFVPLIKSHPDVVIRALRMKRL 145 Query: 288 --PWSEIGTGLS-DKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQ 344 +I G G F + ++ + + ++ + + ++L + Sbjct: 146 CNELCDILVGRHVHPISAVIGGFTKLPSEIDLEEMHKK---LLALQKDIEVTIELFKDLK 202 Query: 345 VQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR 404 EF Y + +P + V + Y+ K +W Sbjct: 203 FPEFERDTEYIALVNDEDEYPLLYGDIGSTDGYRVSKYEYKNVTNEFIVPYASAKRTKWH 262 Query: 405 GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 + VG LAR + Y K E+ + + + + E Sbjct: 263 RESYAVGALARFNLNYEKLHPKAKEAAATLGLKPKC-----INPYLNTVAQIVECVHCVE 317 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKI 523 + L N + GVG E PRG L H + G Sbjct: 318 DAIRIIETLWQKGINYDEVVVPDINEHGLLPQRAGEGVGAVEVPRGLLIHHYECDERGIF 377 Query: 524 DLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 C++PT N + E + E L + + ++DPC++CS H+ Sbjct: 378 RNANCIIPTNQNTHNIELDMLKLVPEII----NQSPEEIRLSLEMLVRAYDPCISCSVHM 433 Query: 584 LGDD 587 + Sbjct: 434 VEVK 437 Score = 145 bits (364), Expect = 7e-33, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 11/193 (5%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + V+ +TR+EGH V + D + + R E L+GR +A RICG+ Sbjct: 7 INVNYLTRVEGHGNIVVEVKDGKLEICRLEIVESPRFFEAFLRGRSIYEAPHITCRICGI 66 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H LAS+ A EDA+GIK + ++R ++L H++H Y L D + V + Sbjct: 67 CSCGHTLASIQAAEDALGIKPTEQTVLLRKLLLHYEQLDSHILHIYLLVAPDLVGVPSFV 126 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + ++L + N L + G + G KLP E Sbjct: 127 PLIKSHPDVVIRALR---------MKRLCNELCDILVGRHVHPISAVIGGFT--KLPSEI 175 Query: 199 NLMGFAHYLEALD 211 +L L AL Sbjct: 176 DLEEMHKKLLALQ 188 >UniRef50_Q9XBW8 HoxH n=1 Tax=Rhodobacter capsulatus RepID=Q9XBW8_RHOCA Length = 503 Score = 182 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 91/570 (15%), Positives = 159/570 (27%), Gaps = 128/570 (22%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G R + ++ + + G+E +L+GR + V+R+CG+C H LA+V Sbjct: 35 GQGRVTICLDARGQVRQVQLHLLDLCGVETLLEGRAIAEIPEAVQRLCGLCPVSHHLAAV 94 Query: 89 YAIEDAIGIK-VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A++ G + A +R +M H V Y LA D + Sbjct: 95 KAMDRIAGYDRLTPTAEKLRRLMQYGQIVQSHAVQLYHLAEPDLLL-------------- 140 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 G+ P + + Sbjct: 141 -------------------------------------GFDSEPARRGLVDVARAFPQLAT 163 Query: 208 EALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRT 267 E + +R ++ G V G + +++++ + R Sbjct: 164 EGVLMRRFGQEVVRAITGGRLRGAGAVPGGMRRPLPRAARDQLRADVDQVIDWAAGALRV 223 Query: 268 ADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVI 327 + ++ AF D S Sbjct: 224 LERLHGTNP-----------------------------AFYDHPPRPAATSWRWSA---- 250 Query: 328 NGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQ 387 VD D + D G FD + Y + S Sbjct: 251 -----PSGAVDFYDGRL-----------RARDARGATLFDAVPAAAYRGVLAEPSGPGGP 294 Query: 388 QLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS 447 L + VGPLAR + R+++ + +Q Sbjct: 295 HLRALGPET---------GWYRVGPLARLQVCDLLTSEKAETERQRLLAPGD--GKPLQG 343 Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 ++ R E AA ++ D + T+ P VG EA Sbjct: 344 SVFHHGARLVELLHAAELIRDLLD---------DPELLGTDLMADRGAPQR-EAVGVIEA 393 Query: 508 PRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 PRG L + + G+I ++ T N+ D Q G ++ + I Sbjct: 394 PRGTLLQRYEVDEAGRIRRCTLLLSTRNNSRAMDAALQ-GVAAQYCDGRRVT-EDLLAHI 451 Query: 567 LRTLHSFDPCLACSTHVLGDDGSELISVQV 596 + +FDPCL+C+ H L G +SV++ Sbjct: 452 EVAIRAFDPCLSCAAHAL---GQMPLSVEL 478 >UniRef50_C8WGI5 Nickel-dependent hydrogenase large subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI5_EGGLE Length = 430 Score = 182 bits (461), Expect = 4e-44, Method: Composition-based stats. Identities = 89/566 (15%), Positives = 160/566 (28%), Gaps = 143/566 (25%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + VD I R+EGH V I D V T ++ R E +++GR + RICG+ Sbjct: 6 IHVDHIARVEGHGNVHVVIEDGEVKTVEMNVVEPARLFESMVRGRRFEEIPYISSRICGI 65 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H+V + I+ + + Sbjct: 66 CS------------------------------------SSHVV-----TDLKAIERVFGV 84 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + R + + + L +F + P Sbjct: 85 EVTDRTRALRELLVYGSYLQNHA---------------SHLFVFAAPDFLGMPSVFPLAQ 129 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHP-NWIVGGMPCAINIDESGAVGAVNMERL 257 +AL + ++ GG++ HP +VGG I E +++ Sbjct: 130 TDPELFE--QALGLKALGNELCTKVGGRSIHPITAVVGGFTHEIEPAE----YLELADKM 183 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEK 317 + D +PD +L+ + ++ Sbjct: 184 DAAMDFALEAVDLFRGFEVPDIATA----------------GDMLAMVEDDYYPVECSDQ 227 Query: 318 SLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPG 377 + + G V D +VQE + + P Sbjct: 228 AFFLNAGIV-------------FDANEVQEHI-----------------EEHAVPHSAAL 257 Query: 378 DVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSA 437 + R + G LAR ++ + + Sbjct: 258 --------------------LARVRETQSPYFTGALARVNASWQNLGQNAKVAAAKAG-- 295 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 + + +A E A + KL + + + Sbjct: 296 ---LRPPEANPFMNNVAQAVEIVDALDRCADLCRKLAEPGAIASSSLPVPFEV------K 346 Query: 498 ECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 R VGFTEAPRGAL H + +G++ + PT N + + ++ L+ Sbjct: 347 AGRAVGFTEAPRGALFHDLTLDAEGRVTHASILTPTAQNVANLEADMRL--LAEKLVADG 404 Query: 557 MAIPEQPLEILRTLHSFDPCLACSTH 582 A LEI + + ++DPCL+CS H Sbjct: 405 AAEDVVRLEIEKLVRAYDPCLSCSVH 430 >UniRef50_B6YWP8 Hydrogenase 4, subunit 5 n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YWP8_THEON Length = 540 Score = 178 bits (452), Expect = 4e-43, Method: Composition-based stats. Identities = 54/293 (18%), Positives = 103/293 (35%), Gaps = 16/293 (5%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR-DPRDAWAFVERIC 76 + + P + E+ + V+ + RG+E + + R ERIC Sbjct: 161 IPLGPYHPSLHEPEYFELYVKGDKVVDAEYRGFHIHRGMEKLAESRMTINQIPFLAERIC 220 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL-AGMDWIDVL 135 G+C H+ A A+EDA GI VP+ A IR IML H HL+ F + + + Sbjct: 221 GICGCTHSAAYCQAVEDAAGIYVPERAQYIRTIMLEVERIHSHLLWFGVVCHLLGFDSGF 280 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + ++A+ ++ K+ R + + + + L Sbjct: 281 MHIWRAREYIMDIAELITGNRKTYGINIVGGVRRDITEDKKEKTLKLLDMVEKESREVLD 340 Query: 196 PEANLMGFAHYLEALDF--QREIVKIHAV----------FGGKNPHPNWIVGGMPCAINI 243 A + +E + ++E +I V + HP + + + Sbjct: 341 NIAEMKELRERMEGVGVLPKKEAREIGVVGPMARSSGIDTDVRRDHPYAAYKDLDFKVPV 400 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGL 296 + G V A + R + + N+ P L ++ P ++G G+ Sbjct: 401 YKEGDVFARFLVRYEEIFESFNMIRQALENMP-PGELINDEYEIPPFKLGIGV 452 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 57/186 (30%), Gaps = 29/186 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR G V + +L G + R + Sbjct: 369 VGPMAR-----SSGIDTDVRRDHPYAAYKDLDFKVPVYKEGDVFARFLVRYEEIFESFNM 423 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQC 528 + + N+ G L E P G+G TEAPRG H + I + Sbjct: 424 IRQALENMPPGELINDEYE------IPPFKLGIGVTEAPRGENIHAVITWGENMIYRWHP 477 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV--LGD 586 T N A L +A + S DPC +C+ HV + Sbjct: 478 RAATYNNLP---------AVPIMLRGNDVAD------APLIIASIDPCFSCTDHVSIIDS 522 Query: 587 DGSELI 592 + +++ Sbjct: 523 ESGKIL 528 >UniRef50_A1RWL3 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Archaea RepID=A1RWL3_THEPD Length = 567 Score = 177 bits (449), Expect = 9e-43, Method: Composition-based stats. Identities = 55/293 (18%), Positives = 101/293 (34%), Gaps = 19/293 (6%) Query: 14 NAGRRLVVDPITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR-DPRDAWAF 71 ++ + P+ + + V ++ + V+ + RG+E + + R Sbjct: 176 EGIMQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFI 235 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY---QLAG 128 ERICG+C H+ A A+E A+GI+VP+ A IR +ML H HL++ LAG Sbjct: 236 AERICGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAG 295 Query: 129 MDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 DW A K +A+ L+ K+ R + Sbjct: 296 FDW--GFMAFFKAREKVMYMAELLTGGRKTYGMNVVGGVRRDITEDRAKKALEILKEVEK 353 Query: 189 HPQYKLPPEANL-MGFAHYLEALDFQREIVKIHAVFGG-----------KNPHPNWIVGG 236 + L + + + R++ + +V G + HP Sbjct: 354 EYKAVLDAVLSTSTLVSRAKDVGVLPRDVARKVSVVGPVARGSSIKRDTRKDHPYAAYSE 413 Query: 237 MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPW 289 + + + G V A R I+ + N+ A + +P+ Sbjct: 414 VDFKVPVHSEGDVLARLSVRAEETFETISIIRQVLENMPGGPIQAEVKEYRPY 466 Score = 96.9 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 64/185 (34%), Gaps = 27/185 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + + +P+ L R+ RA E ++ Sbjct: 389 VGPVARGS-SIKRDTRKDHPYAAYSEVDFKVPVHSEGDVLARLSVRAEETFETISIIRQV 447 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQC 528 + + G A +++ P RG+G+ EAPRG H+ K+ ++ Sbjct: 448 LENM-----PGGPIQAEVKEYRPY-----ARGLGYVEAPRGEDVHFVITGPHSKVYRWRV 497 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 +T+N P P G ++ + S DPC +C+ V+ D Sbjct: 498 RA-STYNNWPAIPYMCRG--------------YTLADLPLIIGSIDPCYSCTERVIVVDV 542 Query: 589 SELIS 593 + Sbjct: 543 KSGRT 547 >UniRef50_Q2LYD7 Nickel-dependent hydrogenase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LYD7_SYNAS Length = 441 Score = 175 bits (442), Expect = 6e-42, Method: Composition-based stats. Identities = 61/419 (14%), Positives = 113/419 (26%), Gaps = 43/419 (10%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E ++ E + R I + + + D G + Sbjct: 35 EFQVVESPRLFEGMLRGRSIFEAQHITSRICGICSCGHSLASIQAAEDALGVTPTEQTIK 94 Query: 257 LNLVQSIITRTADFINNVMI---PDALAIGQFNK--------------------PWSEIG 293 L + + +V + PD L + F +I Sbjct: 95 LRKLLLDYEFLDSHVLHVYLLAAPDVLGVPSFVPLVKTHNAVVRRALRMKKLCNDVCDIL 154 Query: 294 TGLS-DKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV---LPVDLVDPQQVQEFV 349 G G F + ++L ++ + + + D + E+V Sbjct: 155 VGRHVHPISAIVGGFTKLPRPKDLDAMLEMLESMRDDMAETLALAKTLQFPDFYRETEYV 214 Query: 350 DHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAME 409 +D G + + D + S K +W ++ Sbjct: 215 G-----LVSDDEEYPLLMGD-VGSTDGKRLGKKDYRQATNEFIDPRSSAKFAKWSRDSYL 268 Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VG LAR + K + + + + + E Sbjct: 269 VGALARFNLNSDKLHPTAKAIAEELGLK-----PICHNPYLNTVAQVVEIVHCYEHAIDL 323 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGH-WAAIRDGKIDLYQC 528 L N N + + GVG E PRG L H + +G I+ C Sbjct: 324 IKDLKKNGINYDEEIVVGVNEQQKIPVRAGDGVGAVEVPRGILFHNYVTDSNGIIEQANC 383 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 ++PT N + + E E L++ + ++DPC++CS H L Sbjct: 384 IIPTNQNIANIEYDMMKLLPEI----LDQTKEEITLKMEMLVRAYDPCISCSAHYLNVK 438 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 14/204 (6%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 + N ++ V+ +TR+EGH +++ + + R E +L+GR +A Sbjct: 1 MANKTVKIDVEYLTRVEGHGNIVIDVKEGKIDKCEFQVVESPRLFEGMLRGRSIFEAQHI 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 RICG+C+ H+LAS+ A EDA+G+ + +R ++L + H++H Y LA D Sbjct: 61 TSRICGICSCGHSLASIQAAEDALGVTPTEQTIKLRKLLLDYEFLDSHVLHVYLLAAPDV 120 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 + V + + + ++L + N + + G + G + Sbjct: 121 LGVPSFVPLVKTHNAVVRRALR---------MKKLCNDVCDILVGRHVHPISAIVGGFTK 171 Query: 192 YKLPPEANLMGFAHYLEALDFQRE 215 P + + M LE L+ R+ Sbjct: 172 LPRPKDLDAM-----LEMLESMRD 190 >UniRef50_B7R5K6 Hydrogenase-4 component G n=1 Tax=Thermococcus sp. AM4 RepID=B7R5K6_9EURY Length = 545 Score = 164 bits (415), Expect = 7e-39, Method: Composition-based stats. Identities = 49/293 (16%), Positives = 102/293 (34%), Gaps = 16/293 (5%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR-DPRDAWAFVERIC 76 + + P + E+ + ++ + RG+E + + R ERIC Sbjct: 161 VPLGPYHPTLHEPEYFELYVKGDKIVDAKYRGFHIHRGMEKLAESRMTLNQVPFLAERIC 220 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY-QLAGMDWIDVL 135 G+C H+ A A+EDA I VP+ A IR IML H HL+ F + + Sbjct: 221 GICGCTHSTAYCQAVEDATNIYVPERARYIRTIMLEVERLHSHLLWFGVACHLLGFDSGF 280 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 L ++A+ ++ K+ R + ++ + + L Sbjct: 281 MHLWRAREYIMDIAELITGNRKTYGINLIGGVRRDIPEEKKRKVLELLDLAEKDSREILD 340 Query: 196 PEANLMGFAHYLEALDF--QREIVKIHAV----------FGGKNPHPNWIVGGMPCAINI 243 + +E + +++ +I V + HP G + + + Sbjct: 341 NVVKMGELKERMENVGVLPKKKGREIGVVGPVARASGIDTDVRRDHPYAAYGDLDFEVPV 400 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGL 296 + V + + R + + ++N+ + L + P ++G G+ Sbjct: 401 YKGEDVLSRFLVRYDETFQSFSMIRQALDNMPEGE-LINEDYEIPGFKLGLGV 452 Score = 96.5 bits (238), Expect = 2e-18, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 62/186 (33%), Gaps = 27/186 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR +P+ + L R L R E + ++ Sbjct: 369 VGPVARASGIDTDVR-RDHPYAAYGDLDFEVPVYKGEDVLSRFLVRYDETFQSFSMIRQA 427 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 D N+ G L E P G+G TEAPRG H I G+ +Y+ Sbjct: 428 LD----NMPEGELIN------EDYEIPGFKLGLGVTEAPRGEDVH-VVITWGENKVYRWH 476 Query: 530 V-PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 +T+N P A L +A + S DPC +C+ HV D Sbjct: 477 PRASTYNNLP--------AVPVMLRGNDIAD------APIIIASIDPCFSCTDHVSIIDS 522 Query: 589 SELISV 594 + Sbjct: 523 ENGRVL 528 >UniRef50_C6A3Z3 Membrane-bound hydrogenase MBH 2, subunit Mbh2L (NiFe hydrogenase catalytic subunit) n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A3Z3_THESM Length = 412 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 109/317 (34%), Gaps = 36/317 (11%) Query: 12 INNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + + + PI ++ +R E + + ++ V G RG+E + R+ Sbjct: 1 MAKTTYYVPIGPIHPALKEPIRVEAEVEGEKIVKVDVKRGFAHRGIEYMGMKRNAIQTLY 60 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG-- 128 ERICG+C+ H A V E A+GI+ P A IR I+ H H++ +A Sbjct: 61 LSERICGICSISHPYAFVIGSEKALGIEAPPRAQYIRTIIAELERIHSHILWLGVIAHEI 120 Query: 129 ----------------MDWIDVL------DALKADPRKTSELAQSLSSWPKSSPGYFFDV 166 +D ++ + ++ +L +S K Y+++ Sbjct: 121 GFDSLLFWTWKGREKVLDILEAITGNRINYSMYMIGGVRRDLKESHIRVLKDMITYYWEF 180 Query: 167 QNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVF 223 +K+ + R + + NL+G L Q +A Sbjct: 181 TEHMKEVFLSDPVYKARTRGVAQVSKDVALKLNLVGPTARAAGLRMDIRQDIPYDAYADI 240 Query: 224 GGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIG 283 K P IVG + G V M R+ ++ + I+N+ LAI Sbjct: 241 DVKAVVPQDIVG--------EARGDAYDVTMVRIYEIEQSLDIIEYCIDNLPEGKILAIP 292 Query: 284 QFNKPWSEIGTGLSDKC 300 + ++I + Sbjct: 293 NYIALLNKIKKTEGEGI 309 Score = 90.4 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 68/196 (34%), Gaps = 27/196 (13%) Query: 410 VGPLAR-----TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP AR I A + + + ++ + R +E + + Sbjct: 215 VGPTARAAGLRMDIRQDIPYDAYADIDVKAVVPQDIVGEARGDAYDVTMVRIYEIEQSLD 274 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-- 522 ++Y D L LA + TE G+G EAPRG + H+ + Sbjct: 275 IIEYCIDNLPEG---KILAIPNYIALLNKIKKTEGEGIGAHEAPRGEVVHYFRYDGTRDG 331 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS-- 580 +++ + P+ N + L+ ++A I + DPC+ C+ Sbjct: 332 PAVWKVIAPSYNNINSWG---------YCLLGAEVAD------IPVVVAYIDPCMCCNDR 376 Query: 581 THVLGDDGSELISVQV 596 V+ D +++ + Sbjct: 377 VAVVKDSTGKILDYSI 392 >UniRef50_B1L3Q0 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3Q0_KORCO Length = 427 Score = 163 bits (413), Expect = 1e-38, Method: Composition-based stats. Identities = 69/411 (16%), Positives = 131/411 (31%), Gaps = 45/411 (10%) Query: 198 ANLMGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 + + E + + E+ I A P P + + + Sbjct: 32 LRIYEGPRFFERILIGKSYYEVPDITARICSICPDPYQVASSRAIEKAMGIRVDRQVEAL 91 Query: 255 ERLNLVQSIITRTADFINNVMIPDAL----AIGQFNKPWSEIGTGLSDKCVLSY------ 304 L L+ +I A + + +PD L AIG + + L K + Sbjct: 92 RELQLISDVIHSHALHLFFLALPDFLGYKDAIGMAAQYPETVKLALKVKRAGNAIKEVIT 151 Query: 305 -----------GAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAW 353 G + + + L + I+G + + ++ E+ Sbjct: 152 GRTVHGVVTKPGGYTKVPRAEDLERLRKQLESSIDGAREAIR---VFSSLKMPEYSLDDN 208 Query: 354 YRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPL 413 D + + G + +S K ++G++ G L Sbjct: 209 LYIAVDPGEHYGYSGEYLLVSDGTRHPVEKYMDLTNEVTVEHSSAKHSSYKGSSFMTGAL 268 Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 AR L+ + ES + + ++ + + +A E ++ + D Sbjct: 269 ARLLLNEKRLYGEAKESYESLRDKIDPR-----NPFSNNMAQAIELLYSVQRAMDIID-- 321 Query: 474 MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPT 532 G L +K P G+ EAPRG L H + D GK+ V PT Sbjct: 322 ------GLLDEGIKDKLMVEVKPRAGEGIAVVEAPRGLLYHHYKLDDNGKVVFANLVTPT 375 Query: 533 TWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 NA+ D +I L ++ E L++ + ++DPC++CS H+ Sbjct: 376 AQNAANMDKYLRIAV--RNLK--DLSDDELKLKLEMLVRAYDPCISCSVHL 422 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 51/206 (24%), Positives = 88/206 (42%), Gaps = 12/206 (5%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R +VV+ + R+EGH EV + V + R E IL G+ + RIC Sbjct: 2 REIVVEHLARVEGHGDIEVVVEGDAVKRAVLRIYEGPRFFERILIGKSYYEVPDITARIC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C + +AS AIE A+GI+V +R + L + H H +H + LA D++ D Sbjct: 62 SICPDPYQVASSRAIEKAMGIRVDRQVEALRELQLISDVIHSHALHLFFLALPDFLGYKD 121 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 A+ + + +L N +K+ + G + G+ K+P Sbjct: 122 AIGMAAQYPETVKLALK---------VKRAGNAIKEVITGRTVHGVVTKPGGYT--KVPR 170 Query: 197 EANLMGFAHYLE-ALDFQREIVKIHA 221 +L LE ++D RE +++ + Sbjct: 171 AEDLERLRKQLESSIDGAREAIRVFS 196 >UniRef50_C7NPL2 Nickel-dependent hydrogenase large subunit n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NPL2_HALUD Length = 439 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 76/410 (18%), Positives = 129/410 (31%), Gaps = 41/410 (10%) Query: 203 FAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQS 262 Y E++ R + H V + G + RL + Sbjct: 40 SPRYFESMLVGRSFEESHHVTSRICAICSVSHTIASLQATEAALGVSVSEQDRRLRKLAL 99 Query: 263 IITRTADFINNV---MIPDALAIGQFNKPW---SEIGTGLSDKCVLSYGAFPDIANDFGE 316 + ++ +PD + + + D L + Sbjct: 100 YGETLQSHVLHLGYLALPDLVGEKSVLPLADTHEDELETVIDLHRLGNELTEVVTGRSVH 159 Query: 317 KSLLMPGGAVINGDFNNVLPV------------DLVDPQQVQEFVDHAWYRYPNDQVGRH 364 L+PGG + + + + +L D V A+ R H Sbjct: 160 AQRLVPGGISQLPEESELQALLDRLVNSWDAVAELADLLAVLADEFPAFERETEYISLTH 219 Query: 365 P----FDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAY 420 P F T + G++ SD +S K R + VG LAR Sbjct: 220 PEEYAFAEGTIYSSDVGEIPVSDYRDVANEYVVEHSTAKFARHERESYMVGALARFNNNA 279 Query: 421 HKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNG 480 + E DR + + + + + E G+ + L+ Sbjct: 280 DQLAPRATEIADRFGLD-----APVHNPYLNNVAQLVEVAHLLGESVRLIEALLD----- 329 Query: 481 NLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPR 539 + T + P PT +G+G E PRG L H A D G++ CV+PT N Sbjct: 330 DGLTPQSNYHVPEIDPTAGQGIGAIEVPRGVLFHEYAYDDTGEVTEANCVIPTNQN---- 385 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPLE--ILRTLHSFDPCLACSTHVLGDD 587 G I L+ T + PE ++ + + ++DPC++CSTH L + Sbjct: 386 --HGNIQRDMETLVPTIVDHPEDEIKHSLEMLVRAYDPCISCSTHYLDVE 433 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 44/178 (24%), Positives = 67/178 (37%), Gaps = 1/178 (0%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 D +TR+EGH VN D + T R E +L GR ++ RIC +C+ Sbjct: 10 DLVTRVEGHGSIVVNAEDGELDTCEWQVVESPRYFESMLVGRSFEESHHVTSRICAICSV 69 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 H +AS+ A E A+G+ V + +R + L H++H LA D + L Sbjct: 70 SHTIASLQATEAALGVSVSEQDRRLRKLALYGETLQSHVLHLGYLALPDLVGEKSVLPLA 129 Query: 142 PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 EL +++ + V R GI + Q L N Sbjct: 130 DTHEDEL-ETVIDLHRLGNELTEVVTGRSVHAQRLVPGGISQLPEESELQALLDRLVN 186 >UniRef50_B6YTW8 Hydrogenase 4, component G or formate hydrogen lyase, subunit 5 n=5 Tax=Thermococcaceae RepID=B6YTW8_THEON Length = 584 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 99/299 (33%), Gaps = 15/299 (5%) Query: 8 QGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR-DP 65 + P +E + + + + RG+E I +GR Sbjct: 188 PYKEPKKDEIVVPYGPYHVALEEAAHFRLYVKGETITDVDYRGFYAHRGIEKISEGRLTY 247 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 ERICG+C H+ A A+E+A GI+VP+ A IR I+L H HL++F Sbjct: 248 DQVCFIAERICGICGCTHSTAYCQAVENAGGIEVPERAEYIRTIVLEIERLHSHLLNFGI 307 Query: 126 LAGMDWIDVLDALKADPRK-TSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 ++ + D R+ LA+ L+ K+ R + Sbjct: 308 VSHLVGYDYGFMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLK 367 Query: 185 GYWGHPQYKLPPEANLMGFAHYLEALDFQ--REIVKI----------HAVFGGKNPHPNW 232 + + F LE + + + F + HP Sbjct: 368 KIKTEFSELVDEAISTSTFVKRLEGVGVLPYKVAKEWDVDGPLGRGSGRDFDVRRDHPYA 427 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE 291 + + + + G V A + R+ V I ++ + D LA + P+SE Sbjct: 428 AYKYLDFKVPVYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILAEYKEIPPYSE 486 Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats. Identities = 42/280 (15%), Positives = 81/280 (28%), Gaps = 51/280 (18%) Query: 338 DLVDPQQVQEFV----------DHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQ 387 + +++E V + V R + + ++ + Sbjct: 317 GFMKAWRIREHVMWLAERLTGNRKTYGMLLVGGVRRDLLEYRKSLIEDVLKKIKTEFSEL 376 Query: 388 QLNEQERYSWIKAPRWRG---NAMEV-------GPLARTLIAYHKGDAATVESVDRMMSA 437 +++K R G +V GPL R G V + Sbjct: 377 VDEAISTSTFVK--RLEGVGVLPYKVAKEWDVDGPLGR-----GSGRDFDVRRDHPYAAY 429 Query: 438 LNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPT 497 L G +L RA + + ++ + + G++ E P Sbjct: 430 KYLDFKVPVYKEGDVLARALVRIEEVFESIWIIEQALDQMPGGDILA------EYKEIPP 483 Query: 498 ECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTK 556 +G TEAPRG H+ + K+ Y+ T N A + Sbjct: 484 YSEAIGMTEAPRGENIHYVMTGENNKVYRYRARAATYNNLP---------AVPDMMRGYT 534 Query: 557 MAIPEQPLEILRTLHSFDPCLACS--THVLGDDGSELISV 594 +A + S DPC +C+ V+ + ++ + Sbjct: 535 IAD------APLIVASIDPCYSCTERVQVVDVESGKVRVL 568 >UniRef50_B7XKR6 Ni,Fe-hydrogenase I large subunit n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XKR6_ENTBH Length = 174 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 96/165 (58%), Gaps = 7/165 (4%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 R ++DPITRIEGH+R E+ ++ V+T+A G FRG+E+++Q R P DA V+RICG Sbjct: 3 RSIIDPITRIEGHLRVEMEVD-NGVVTDAWVSGGCFRGMELVVQDRTPEDAAQIVQRICG 61 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 VC HA S A E A IK+ +NA IIRNI+ + H H++ FY LAG D+++ L+A Sbjct: 62 VCPVSHAHVSSIAAEKAXHIKISNNARIIRNIIEGAQFLHSHILWFYTLAGSDYVNPLNA 121 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIF 182 L A+ +L S + ++ D+ +K +G F Sbjct: 122 LNANIATAYDLVSSAGTGCQT------DLTALAQKLTSSPTMGSF 160 >UniRef50_C5A3D4 Formate hydrogenlyase I subunit F (Mhy1F) n=2 Tax=Thermococcus RepID=C5A3D4_THEGJ Length = 601 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 44/298 (14%), Positives = 99/298 (33%), Gaps = 22/298 (7%) Query: 3 TQYETQGYTINNAGRRLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 + +T+ + + P+ IE + + + ++ RG+E + Sbjct: 197 AEVKTEYRETPEGTTLVPMGPVHAGIEEPAHFRLFVKGEEIVDVDYRGFYSHRGIEKTGE 256 Query: 62 GR-DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 GR ERICG+C H+++ A+E + +PD A IR +ML H+HL Sbjct: 257 GRLTYNQVLFLAERICGICGYQHSVSYAMAVERLADVDIPDRARYIRTLMLELERIHNHL 316 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE---GG 177 + A + + R + + + Y ++ +++ + Sbjct: 317 LWVGIAAHL--VGYDTGFMHAWRIREPVMWLVERLTGNRKQYGMNIVGGVRRDILDYRKE 374 Query: 178 QLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR-EIVKIHAVFGG----------- 225 ++ + L N F E + ++ K ++V G Sbjct: 375 EILKVVKQIREETKKFLDIALNTNTFIKRAEGVGILPYKVAKAYSVLGPTARASGRRIDT 434 Query: 226 ---KNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDAL 280 + + + + + G V A + R++ + + I+ + D + Sbjct: 435 RLDQATKTAMAYNEVDFKVPVYKEGDVLARVLVRMDELFESLWIVEQLIDQMPGGDIM 492 Score = 104 bits (259), Expect = 8e-21, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 68/195 (34%), Gaps = 31/195 (15%) Query: 406 NAMEV-GPLARTLIA--YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWA 462 A V GP AR + D AT ++ +P+ L R+L R E + Sbjct: 416 KAYSVLGPTARASGRRIDTRLDQATKTAMAYNEVDFKVPVYKEGDVLARVLVRMDELFES 475 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDG 521 + ++L+ + G++ + P +GFTEA RG + H+ Sbjct: 476 L----WIVEQLIDQMPGGDIMVPIGD------LPEYEEALGFTEAHRGEVVHYVMTGEKN 525 Query: 522 KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS- 580 K+ ++ PT N A L +A + S DPC +C+ Sbjct: 526 KVYRWKVRAPTYNNLP---------AVPEMLKGYHVAD------APLIIASIDPCYSCTE 570 Query: 581 -THVLGDDGSELISV 594 + + ++ + Sbjct: 571 RVQFVDVETGKVKVL 585 >UniRef50_B5IEA3 Nickel-dependent hydrogenase superfamily n=3 Tax=Aciduliprofundum boonei T469 RepID=B5IEA3_9EURY Length = 421 Score = 160 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 10/226 (4%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 RR+ ++ IT+IEGH + I D+N+ R E + G+ + RIC Sbjct: 4 RRIRIEEITKIEGHANLTIEIEDENLKRVIFGVHEGSRYFEAFMVGKSYKYLPELAGRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+CT H +ASV A+EDA+GI++ + +R +ML + H++H Y LA D+ +V Sbjct: 64 GICTVAHEIASVRAVEDALGIEISEEVEDLRKLMLISSHIQSHILHLYFLALPDYRNVES 123 Query: 137 ALKADPRKTS------ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 ++ + + EL ++ + + G + V Y Sbjct: 124 IIELANKNVNLVKKAFELKEASNYMTELIGGRAVQPCTIVPGKVSKRIGKETIERYIKKM 183 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGG 236 + P + LE ++RE + A++ G H + G Sbjct: 184 KEIYPFLLDTAELFLSLEYPKYERE-SEYVALWDG---HSIPLYKG 225 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 63/402 (15%), Positives = 119/402 (29%), Gaps = 40/402 (9%) Query: 201 MGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERL 257 + Y EA + + ++ G + I + + ++ +L Sbjct: 37 HEGSRYFEAFMVGKSYKYLPELAGRICGICTVAHEIASVRAVEDALGIEISEEVEDLRKL 96 Query: 258 NLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVL--SYGAFPDIANDFG 315 L+ S I + + +PD + + ++ + L + ++ Sbjct: 97 MLISSHIQSHILHLYFLALPDYRNVESIIELANKNVNLVKKAFELKEASNYMTELIGGRA 156 Query: 316 EKSLLMPGGAVINGDFNNVLPVDLVDPQQV-------QE-FVDHAWYRYPNDQVGRHPFD 367 + + G V + + +++ E F+ + +Y + +D Sbjct: 157 VQPCTIVPGKVSKRIGKETIERYIKKMKEIYPFLLDTAELFLSLEYPKYERESEYVALWD 216 Query: 368 GITDPWYNPGD------VKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYH 421 G + P Y YS K G VG LAR I Sbjct: 217 GHSIPLYKGEIATLSSIFDPHQYQEHIREWVVEYSSAKHSLIEGRDYMVGALARLNIN-R 275 Query: 422 KGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGN 481 E +R + L +A E A + + L Sbjct: 276 NLREEARELAERYGVRFPSNRIAWIN-----LAQALENVHFALEAMEIAENLKE------ 324 Query: 482 LATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDP 541 + + GVG EAPRG L H I++GK + PT N + Sbjct: 325 -----YDPHKINIPRVSGEGVGVIEAPRGLLIHHYKIKNGKCTYVNIITPTAMNTENIER 379 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 + + N +E + + ++DPC++CS HV Sbjct: 380 ILKGYISQIVSKN----DEYIKMEAEKIIRAYDPCISCSVHV 417 >UniRef50_C0QP83 Nickel-dependent hydrogenase, large subunit n=2 Tax=Hydrogenothermaceae RepID=C0QP83_PERMH Length = 428 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 78/432 (18%), Positives = 140/432 (32%), Gaps = 65/432 (15%) Query: 194 LPPEANLMGFAHYLEALDFQREIVKIHAVFG---GKNPHPNWIVGGMPCAINIDESGAVG 250 + N+ ++E + +E +I V G P I G + Sbjct: 27 KDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRICGICPVAYQISGVQAIEDAFGLKVSSE 86 Query: 251 AVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNK---------------------PW 289 + RL I A + + +PD L G + Sbjct: 87 IEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGSVFEVGKDSPEFLKIGTIIKNAGSEII 146 Query: 290 SEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFV 349 +IG +S +S G F A+D KS++ L + + ++ EF Sbjct: 147 QKIGGRVSHPVSISVGGFTKFADDDSLKSII--------PLLEKALDLSVYALKRFSEFN 198 Query: 350 DHAWY----RYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRG 405 + + + +P + + + Q +S K + G Sbjct: 199 FPDNEIPDIHFLSLEEEEYPILKGDIVSNKGLRLTKEEFDNVIKEYQVDHSTAKRAKLYG 258 Query: 406 NA-MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP++R +Y K ++S + I+++ IL R E + Sbjct: 259 RDLYIVGPISRFNNSYEKLSYMALKSSKDIDLY-----PPIKNSFKTILIRMVEIIHSLE 313 Query: 465 KLQYFFDKL-MTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGK 522 + +LKN + E G G +EAPRG L H + +GK Sbjct: 314 RSIDLIKDYRKESLKNADYTV------------KEGTGYGVSEAPRGILWHKYSFDSEGK 361 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 I V PT+ N + + ++ + I E + + +FDPC++C+TH Sbjct: 362 IKKADIVPPTSQNQDIMEVSVRN------MIMNRENIEEILKTGEKVIRNFDPCISCATH 415 Query: 583 VL---GDDGSEL 591 L G ++ Sbjct: 416 FLKIGEIRGKKI 427 Score = 145 bits (364), Expect = 6e-33, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 75/190 (39%), Gaps = 2/190 (1%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 +++ + +TR+EG + + + ++ R +E IL+G++ RIC Sbjct: 2 KKIE-NLLTRVEGEGSISLFYENGTLKDVKLNIFEPPRFIEGILKGKEYYRIIDVTSRIC 60 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C + ++ V AIEDA G+KV +R + W H VH + L D+++ Sbjct: 61 GICPVAYQISGVQAIEDAFGLKVSSEIEKLRRLYYFGEWIQSHAVHVFFLHLPDFLNKGS 120 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + + + E + + + + R+ V G + + +P Sbjct: 121 VFE-VGKDSPEFLKIGTIIKNAGSEIIQKIGGRVSHPVSISVGGFTKFADDDSLKSIIPL 179 Query: 197 EANLMGFAHY 206 + + Y Sbjct: 180 LEKALDLSVY 189 >UniRef50_B9L8N1 Nickel-dependent hydrogenase, large subunit n=1 Tax=Nautilia profundicola AmH RepID=B9L8N1_NAUPA Length = 387 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 67/392 (17%), Positives = 133/392 (33%), Gaps = 62/392 (15%) Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 +Y++AL ++ + G + H V I + + L +V++ Sbjct: 45 KNYMDALVIN---PRVCGICGHSHLHATVKVIEKVFKAKISKKAQIFREVTSLLEIVENH 101 Query: 264 ITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPG 323 I + + P + ++ + + +S + G FP S ++PG Sbjct: 102 IK----WFYITIYPTQIKDKEYLFKAVKFSSKISKAIAILAGQFP-------HNSYMVPG 150 Query: 324 GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSD 383 G + + ++ + + + +E++ ++ + H + + + Sbjct: 151 GVTCDPTYMEIMRLKDLIKEIKEEYIK----EIMDENLTSHDLERFFENLPKDIGKSLNK 206 Query: 384 T-------------NIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 + + + E+ S K + EVGPLAR +I +K + Sbjct: 207 FLVLGESNIFKSNGDYKNVKEERNKSLSKNALYNNEYYEVGPLARMIINKNKNIKKIYDI 266 Query: 431 VDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 S R+ R +E ++ ++ Sbjct: 267 YS-------------DSIYTRMCARIYEPLLLLDYIEQKLSEV---------DLCEPSFL 304 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 +P + + EAPRG+L H +I++ KID Y VVPT +N + K +A Sbjct: 305 KPNV--RNGKAIVAVEAPRGSLIHEISIKNEKIDYYNIVVPTQFNLA-SSTKENPSPAQA 361 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 ALMN +A + FD C C +H Sbjct: 362 ALMNEDIAYVDS------VFRCFDICAVCMSH 387 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 65/192 (33%), Gaps = 32/192 (16%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG + I I + G+E L+ ++ DA R+CG+C H A+ Sbjct: 12 EGEA--TLKIEGDKKIDFVQIEFWQYHGIEEYLKNKNYMDALVINPRVCGICGHSHLHAT 69 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 V IE K+ A I R + +H+ FY I + L + +S+ Sbjct: 70 VKVIEKVFKAKISKKAQIFREVTSLLEIVENHIKWFYITIYPTQIKDKEYLFKAVKFSSK 129 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 ++++++ G + H Y +P Y+ Sbjct: 130 ISKAIA----------------------------ILAGQFPHNSYMVPGGVTCDPT--YM 159 Query: 208 EALDFQREIVKI 219 E + + I +I Sbjct: 160 EIMRLKDLIKEI 171 >UniRef50_Q3AU04 Hydrogenase/sulfur reductase, alpha subunit n=10 Tax=Chlorobiaceae RepID=Q3AU04_CHLCH Length = 426 Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 94/355 (26%), Gaps = 42/355 (11%) Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE------------------ 291 A + RL + + A + + +PD + Sbjct: 92 LAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVLPLMESHPQVVRAGLQLKELGNSI 151 Query: 292 ---IGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEF 348 + L G K LL V + + F Sbjct: 152 SIAAAGRATHPVSLVLGGITKAPELQQLKELLT---MTQERKLALAQAVTFFEELHIPNF 208 Query: 349 VDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAM 408 + + +P G + +D + +S K R N+ Sbjct: 209 TRETEFISLCN-GVTYPAIGGQLVSSDGITRDENDYLLMTNEYTRDFSTSKFTRLSRNSS 267 Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 G LAR YH R + + + E + Sbjct: 268 AAGALARFNNNYHLLHPNAQAVAARFG-----LQPVCHNPFMNNIAQLVECVHILEDAEE 322 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQ 527 G + E+ + P G EAPRG L H+ D G + Sbjct: 323 LI---------GMVMDMKGEETKCHYTPQAGAATGAVEAPRGILYHYMETNDEGMVVRAD 373 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 C++PTT N Q A E L+ E L+ + S+DPC++CS H Sbjct: 374 CIIPTTQNNGNIYDDLQALAAE--LLREGKCDGEIQLQCEMLVRSYDPCISCSVH 426 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 3/199 (1%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + + +TR+EGH +++ + ++ + R E++L+G A RICG+ Sbjct: 9 INIHHLTRVEGHANIHIHVKNGELVEAQWAIIETPRFFEVMLKGMSAEQAPFLTSRICGI 68 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C+ H+LA++ A+E A+ I P A ++R + + H +H + LA D+ + L Sbjct: 69 CSISHSLANIRALERAMQITPPPLAEVVRRLAMHGETLQSHALHLFFLAVPDFAGLPSVL 128 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 ++ ++ + R V GI + + L Sbjct: 129 PL-MESHPQVVRAGLQLKELGNSISIAAAGRATHPVSLVLGGITKAPELQQLKELLTMTQ 187 Query: 199 NLMGFAHYLEALDFQREIV 217 +A+ F E+ Sbjct: 188 ERKLALA--QAVTFFEELH 204 >UniRef50_B5IS38 Respiratory-chain NADH dehydrogenase, 49 Kd subunit domain protein n=1 Tax=Thermococcus barophilus MP RepID=B5IS38_9EURY Length = 409 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 112/309 (36%), Gaps = 36/309 (11%) Query: 12 INNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + + + PI ++ +R E + + ++ V G RG+E + R+ Sbjct: 1 MPKTAYYIPIGPIHPALKEPIRVEAEVEGEKIVRVDVKRGFAHRGIEYMGMKRNAIQTLY 60 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG-- 128 ERICG+C+ H A V E A+GI+ P A IR I+ H H++ +A Sbjct: 61 LSERICGICSISHPYAFVVTAEKALGIEAPPRAQYIRPIIAELERIHSHILWLGVIAHEM 120 Query: 129 ----------------MDWIDVL------DALKADPRKTSELAQSLSSWPKSSPGYFFDV 166 +D +++L ++ +L +S K + Y++ Sbjct: 121 GFDSLLFWTWKGREKVLDLLELLTGNRINYSVYMIGGVRRDLKESHIKAIKDAITYYWKF 180 Query: 167 QNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVF 223 ++K+ + + R ++ + N++G + Q +A Sbjct: 181 TEQMKEIILSDPVYKARTRGVAQLSKEMALKLNVVGPVARAAGIRMDIRQDMPYDAYADI 240 Query: 224 GGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIG 283 + P IVG + G + M R+ ++ + ++N+ LAI Sbjct: 241 DVRAVVPQDIVG--------EAKGDAYDITMVRIYEIEQSLDIIEYCVDNLPEGKILAIP 292 Query: 284 QFNKPWSEI 292 + ++I Sbjct: 293 NYPALLAKI 301 Score = 90.7 bits (223), Expect = 1e-16, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 67/192 (34%), Gaps = 26/192 (13%) Query: 410 VGPLAR-----TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP+AR I A + R + ++ + R +E + + Sbjct: 215 VGPVARAAGIRMDIRQDMPYDAYADIDVRAVVPQDIVGEAKGDAYDITMVRIYEIEQSLD 274 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-- 522 ++Y D L LA + T+ +G EAPRG + H+ DG+ Sbjct: 275 IIEYCVDNLPEG---KILAIPNYPALLAKIRRTKGEAIGAHEAPRGEVVHYLKF-DGRDG 330 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 +++ + P+ N + P L+ ++A I + DPC+ C+ Sbjct: 331 PSVWKVIAPSYNNINSWAPL---------LLGAEVAD------IPIVVAYIDPCMCCNDR 375 Query: 583 VLGDDGSELISV 594 V E + Sbjct: 376 VALLKTPEGKVL 387 >UniRef50_A7WLW8 Hydrogen-uptake (NiFe) hydrogenase large subunit (Fragment) n=1 Tax=uncultured prokaryote RepID=A7WLW8_9ZZZZ Length = 241 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 110/227 (48%), Gaps = 15/227 (6%) Query: 155 WPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR 214 W +S ++++RL+KFV+ G+LGIF NGYWG+ YKL P NL+ HY +AL+ QR Sbjct: 29 WTRSMHNTSTEMKDRLQKFVKKGRLGIFGNGYWGNSNYKLTPAQNLVAITHYFQALEIQR 88 Query: 215 EIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 ++ ++ +FGGK+PHP + VGG+ I+I + + L + + R FI Sbjct: 89 DLGQMMTIFGGKDPHPQSLVVGGVTSIIDIKDPA--------KRQLFKGLALRVRAFIKG 140 Query: 274 VMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNN 333 +P + + K G G K L YG FP D L PGG V NGD Sbjct: 141 AYMPGMYMLSEMYKGEMIAGEGAGLKSFLVYGGFPLNDGDIYTADKLFPGGIVHNGDL-- 198 Query: 334 VLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVK 380 V DP V E V HAWY HP+DG T P K Sbjct: 199 -TKVTDFDPALVTEDVTHAWYAA---PAPEHPYDGTTTPTIQTLSQK 241 >UniRef50_Q2J4F0 Nickel-dependent hydrogenase, large subunit n=4 Tax=Bacteria RepID=Q2J4F0_FRASC Length = 430 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 75/413 (18%), Positives = 118/413 (28%), Gaps = 50/413 (12%) Query: 198 ANLMGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 + + EA R E I A G P + D + + Sbjct: 35 LKIFEPPRFFEAFLRGRAYTEPPDITARICGICPVAYQMSALAAIEQICDVTVTGPPAAL 94 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE---------------------IG 293 RL I A + + +PD L + IG Sbjct: 95 RRLIYCGEWIESHALHVFLLHLPDFLGYDSALHLAQDQPALVKLGLTLKKAGNTLMTVIG 154 Query: 294 TGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAW 353 G + L+ G + E H Sbjct: 155 GRAIHPVNARVGGWYRAPRRRDLTELV---GQLEQARDIARDTARFTAALDFPEDELHQT 211 Query: 354 YRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWR-GNAMEVGP 412 + + G +P + D+ +D + EQ +S G + GP Sbjct: 212 FVALHQP-GEYPVERGRIASTAGLDIAPADYDRHFTEEQVPWSNALHSTLAAGGSYLTGP 270 Query: 413 LARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDK 472 LAR + + A E+ + ++ I+ R E AA + Sbjct: 271 LARFALGAERLAPAARETAAEIG-----LRPPERNPYRSIIVRCIEMVHAADEALRIIAD 325 Query: 473 LMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVP 531 + P G G TEAPRG L H I +G I + V P Sbjct: 326 YTE-----------PDPSALEAPPRAGTGYGVTEAPRGLLYHRYTIDHNGTILDAKIVPP 374 Query: 532 TTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 T N P + + G E + ++ PE L R + ++DPC++C+TH L Sbjct: 375 TAQNQRPIEEDLR-GVVERFM---NLSEPELALRCERAIRNYDPCISCATHFL 423 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 14/222 (6%) Query: 15 AGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 A R + P+TR+EG R + I D V + R E L+GR + R Sbjct: 3 ATRTIAPPPLTRVEGEGRLLIKITDGRVDEAHLKIFEPPRFFEAFLRGRAYTEPPDITAR 62 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 ICG+C + ++++ AIE + V +R ++ W H +H + L D++ Sbjct: 63 ICGICPVAYQMSALAAIEQICDVTVTGPPAALRRLIYCGEWIESHALHVFLLHLPDFLGY 122 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 AL + + + + + K+ + R V G W Y+ Sbjct: 123 DSALHLAQDQPALV-KLGLTLKKAGNTLMTVIGGRAIHPVNARVGG------W----YRA 171 Query: 195 PPEANLMGFAHYLE-ALDFQREIVK--IHAVFGGKNPHPNWI 233 P +L LE A D R+ + F H ++ Sbjct: 172 PRRRDLTELVGQLEQARDIARDTARFTAALDFPEDELHQTFV 213 >UniRef50_B5EQ52 Nickel-dependent hydrogenase large subunit n=10 Tax=Proteobacteria RepID=B5EQ52_ACIF5 Length = 432 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 65/403 (16%), Positives = 119/403 (29%), Gaps = 38/403 (9%) Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 F +LE ++Q EI + A G P + ++ M R+ Sbjct: 43 PRLFEKFLEGREYQ-EIPDMVARICGICPVAYQMSAVHAIEGIFGQAPGPWVRAMRRVFY 101 Query: 260 VQSIITRTADFINNVMIPDAL------AIGQFNKPWSEIG---TGLSDKCVLSYGAFPDI 310 I + I+ + PD L + + + G L ++ + +G Sbjct: 102 CGEWIQSHSLHIHLLAAPDFLGYSSASEMARAHPDIVRRGLALQALGNEIIRFFGGRSVH 161 Query: 311 ANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQE--------FVDHAWYRYPNDQVG 362 + L + + + Sbjct: 162 PVGARVGGFHRAPSRAEAAVLREQVRAALPGAEALVAWTAALNLPDDPQDFVSVALRHPD 221 Query: 363 RHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHK 422 +P + + D+ +D QE +S G VGPLAR + + Sbjct: 222 EYPMNEGRIVSSDGLDIPIADYESHFREHQEPHSTALYAALDGRPYLVGPLARLNLNLDR 281 Query: 423 GDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNL 482 E++ R A ++ I+ RA E +A + + Sbjct: 282 LHMPVREALGRTGIAF-----PSRNMFHSIVARAAEIHYALLETSRLLEDYTE------- 329 Query: 483 ATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDP 541 E P G G TEAPRG L H + G++ + V PT+ N + + Sbjct: 330 ----PEAPFVPAVPRVGIGYGCTEAPRGLLWHRYDLDAAGQVLHARIVPPTSQNQARMEA 385 Query: 542 KGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + + + + ++DPC++C+TH L Sbjct: 386 DLRHSLE---TLGLDRDGETLRQQAEMVIRNYDPCISCATHFL 425 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 69/174 (39%), Gaps = 9/174 (5%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 L V + R+EG ++ ++D + T + R E L+GR+ ++ V RICG+ Sbjct: 9 LCVPVLARVEGEGALDLEVHDGRIQTLRLRIFEPPRLFEKFLEGREYQEIPDMVARICGI 68 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + +++V+AIE G +R + W H +H + LA D++ A Sbjct: 69 CPVAYQMSAVHAIEGIFGQAPGPWVRAMRRVFYCGEWIQSHSLHIHLLAAPDFLGYSSAS 128 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 + + + L+ + N + +F G + G + Sbjct: 129 EMARAHPDIVRRGLA---------LQALGNEIIRFFGGRSVHPVGARVGGFHRA 173 >UniRef50_B5YKR2 Hydrogenase-4 component G n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YKR2_THEYD Length = 541 Score = 155 bits (390), Expect = 6e-36, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 99/292 (33%), Gaps = 17/292 (5%) Query: 13 NNAGRR-LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG-RDPRDAW 69 G+ + + P +E + ++ + + + RG+E + + + + Sbjct: 157 PEEGKTVIPIGPFYPSLEEPAYFRLIVDGEEIADFDYRGFYVHRGIEKLAESVLNYQQIP 216 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 ERICG+C VH+ A A+E A GI++P A IR++ L H HL+ A + Sbjct: 217 FLAERICGICGFVHSCAYCQAVEKAAGIEIPLRAKFIRSLFLELERLHSHLLWVGLAAHI 276 Query: 130 DWIDVLDALKADPRKTSE-LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 D L R+ + + ++ K+ + + Sbjct: 277 VGFDTLFMQAWRIREPVMYICEIITGNRKTYGINIVGGVTIDVHNQHLKDIDKVISQIEK 336 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQR-EIVKIHAVFGG-----------KNPHPNWIVGG 236 + + + + + + K + V G + P Sbjct: 337 EVRELREIILDDEVIQLRFKNVGVLKYDDAKKYCVCGPVARGSGINIDMRTNFPYAAYPM 396 Query: 237 MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI-PDALAIGQFNK 287 + I +++SG V A + RL + I + N+ P ++ I + Sbjct: 397 LNIRIPLNKSGDVWARTIVRLEEILISINIIRQILENIPEGPTSIKISKIEP 448 Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats. Identities = 32/187 (17%), Positives = 60/187 (32%), Gaps = 29/187 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+AR + M++ + +PL+ R + R E + ++ Sbjct: 373 GPVARGSGINIDMRTNFPYAAYPMLN-IRIPLNKSGDVWARTIVRLEEILISINIIRQIL 431 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCV 529 + + + K EP V + EAPRG L H+ +G+ + Sbjct: 432 ENIPEG-----PTSIKISKIEPWK-----EAVSYIEAPRGQLFHYVMTGPEGRPYRWSVR 481 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH--VLGDD 587 P+ N A L +A + S DPC +C+ ++ Sbjct: 482 APSYQNY---------QALSVMLKGASIAD------APLIIGSIDPCFSCTERYEIVDLK 526 Query: 588 GSELISV 594 + + Sbjct: 527 TNSIKVY 533 >UniRef50_B6YTV8 Coenzyme F420 hydrogenase alpha subunit n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YTV8_THEON Length = 392 Score = 155 bits (390), Expect = 7e-36, Method: Composition-based stats. Identities = 61/403 (15%), Positives = 117/403 (29%), Gaps = 60/403 (14%) Query: 188 GHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 +P + + + G H + I + +N G+ + Sbjct: 48 KNPLFAVEAVMRICGLCHASHGIAMSEAIENAIGIIPPRN--------GILMREALGLVN 99 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + + +E L + ++ + V+ + + ++G + L+ G Sbjct: 100 RIQSHMLEFLMVAGDLL--IEEKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGM 157 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQ-VGRHPF 366 + + + L + G + + + L D E D + + + F Sbjct: 158 FSVP-KWSVFNNLKARLPKLTGQWEEIAHL-LTDEDIQTEVADELREKKAENNYLVSSLF 215 Query: 367 DGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAA 426 G ++ N + S + G +E GP AR Sbjct: 216 YGDRFNINAERIETMPYYEYRKDNPHSKESTTLIAFYGGEKVEAGPRARM--------KV 267 Query: 427 TVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAS 486 E D S G R + A +L+ D + Sbjct: 268 YREFTD-------------SSLYGLHTARVQDTTLALIRLEEILDSIKM----------D 304 Query: 487 TEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQI 545 +GVG EAPRG L H + +G++ + +VPT +N Sbjct: 305 EPFRTKNIVFGPGKGVGVYEAPRGTLIHLIELGDEGRVVSSKIIVPTMFNIP-------- 356 Query: 546 GAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 E + E + +DPC+ C+THV+ G Sbjct: 357 -VMEEMAKGLSVKAAEA------VMRLYDPCIPCTTHVVRLGG 392 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 74/182 (40%), Gaps = 14/182 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDAWAFVERICG 77 + ++ + RI G + + + + +A+ T RG E ++ G++P A V RICG Sbjct: 4 ITLNKVCRIAGEAKLVLY-EENGTVQDALFIATAPIRGFEKLVVGKNPLFAVEAVMRICG 62 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H +A AIE+AIGI P N ++R + H++ F +AG I+ Sbjct: 63 LCHASHGIAMSEAIENAIGIIPPRNGILMREALGLVNRIQSHMLEFLMVAGDLLIE---- 118 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG---HPQYKL 194 K E+ L + Y + G+F W + + +L Sbjct: 119 -----EKREEVLFQLMDFHAKISDYLLKMGGAATHPPNLTVGGMFSVPKWSVFNNLKARL 173 Query: 195 PP 196 P Sbjct: 174 PK 175 >UniRef50_B5Y915 EchE n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y915_COPPD Length = 360 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/342 (17%), Positives = 111/342 (32%), Gaps = 20/342 (5%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG E+ + + V+ + G + R +E R VER CG+C+ H+ A Sbjct: 16 EGEY-IELQLEGEMVVDAEIKIGFIHRAIEKSATKRTFIRDLGLVERTCGICSFHHSWAY 74 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTS- 146 A+E A G++VP+ A IR + H HL++ +A D L R+ Sbjct: 75 CLAVEKAAGLEVPERAEYIRVLTAELERIHSHLMYLGAMAHKMGFDTLFMFTWSGREAVM 134 Query: 147 -----ELAQSLSSWPKSSPGYFFDVQNRLKKFVEG-----GQLGIFRNGYWGHPQYKLPP 196 ++ + G DV + ++ LG+ W L Sbjct: 135 DMLELLSGNRVNYAINTLGGVRRDVDESISSQIKAALETLEDLGLKLKDTWSKDASILAR 194 Query: 197 EANLMGFA----HYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 N+ + H L + I + P + + + + + G V + Sbjct: 195 TKNVGIVSRKEAHLLGVVGPTARGSGIREDL--RKTAPYAVYPLLDFDLVVLDDGDVWSR 252 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE--IGTGLSDKCVLSYGAFPDI 310 R+ V I ++ + K IG + + L+Y D Sbjct: 253 TFVRVLEVLESIKIIRQVLDKMPAGQIKNPKPVLKIEPNDVIGRVEAPRGELAYHLITDG 312 Query: 311 ANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHA 352 + G + P + + + +L D + +D Sbjct: 313 TDKPGRLKIRTPTLINLPASEHMMRGSNLADAPVIVGHIDPC 354 Score = 93.1 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 50/172 (29%), Gaps = 26/172 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR +V ++ + L R R E + ++ Sbjct: 212 VGPTARGSGIREDLRKTAPYAVYPLLDFDLVVLDDGD-VWSRTFVRVLEVLESIKIIRQV 270 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL-GHWAAIRDGKIDLYQC 528 DK+ + +P +G EAPRG L H K + Sbjct: 271 LDKMPAG---------QIKNPKPVLKIEPNDVIGRVEAPRGELAYHLITDGTDKPGRLKI 321 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 PT N A E + + +A + DPC++C Sbjct: 322 RTPTLINLP---------ASEHMMRGSNLAD------APVIVGHIDPCMSCM 358 >UniRef50_B8HJR0 Coenzyme F420 hydrogenase n=14 Tax=Bacteria RepID=B8HJR0_CYAP4 Length = 433 Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats. Identities = 60/273 (21%), Positives = 100/273 (36%), Gaps = 22/273 (8%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + L VD + R+EG V I D V + R E L+GR +A Sbjct: 1 MTTKTLKVDYLGRVEGEGAMYVQIRDNRVREVKLKIFEPPRFFEAFLRGRQYSEAPDITS 60 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C + +++V A+ED +G+ V +R ++ W H +H + L D++ Sbjct: 61 RICGICPIAYMMSAVQAMEDILGVAVAGGMRDLRRLLYCGEWIESHALHIFMLHAPDFLG 120 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + + + L + N++ + G + G YK Sbjct: 121 YDSVIAMAGDYPDLVQRGLR---------LKKIGNQIISLIGGRAIHPINVRVGG--FYK 169 Query: 194 LPPEANLMGFAHYLE-ALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 LP +L LE A+ E V+ A F P P++ G + Sbjct: 170 LPSRQDLHSLVADLEWAVAAAAETVRWVAAF----PFPDFAP---DYEFVALHHGEEYPM 222 Query: 253 NMERLNLVQSI---ITRTADFINNVMIPDALAI 282 N RL + + I + D I P + A+ Sbjct: 223 NQGRLVSNKGLDIPIHQFYDQIEEQHRPHSTAL 255 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 76/422 (18%), Positives = 129/422 (30%), Gaps = 60/422 (14%) Query: 197 EANLMGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 + + + EA R E I + G P + + + A G + Sbjct: 33 KLKIFEPPRFFEAFLRGRQYSEAPDITSRICGICPIAYMMSAVQAMEDILGVAVAGGMRD 92 Query: 254 MERLNLVQSIITRTADFINNVMIPDAL------AIGQFNKPWSEIGTGLS---------- 297 + RL I A I + PD L A+ + G L Sbjct: 93 LRRLLYCGEWIESHALHIFMLHAPDFLGYDSVIAMAGDYPDLVQRGLRLKKIGNQIISLI 152 Query: 298 -----DKCVLSYGAFPDIANDFGEKSLLM-----PGGAVINGDFNNVLPVDLVDPQQVQE 347 + G F + + SL+ A + P P E Sbjct: 153 GGRAIHPINVRVGGFYKLPSRQDLHSLVADLEWAVAAAAETVRWVAAFPFPDFAPDY--E 210 Query: 348 FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGN- 406 FV +P + D+ Q + +S + + Sbjct: 211 FV-------ALHHGEEYPMNQGRLVSNKGLDIPIHQFYDQIEEQHRPHSTALQAQLKERG 263 Query: 407 AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKL 466 +GPLAR + + + T +V + + L + +S I+ R+ E +AA + Sbjct: 264 NYFLGPLARFNLNFEQLTPRTQ-AVAQSVGMTPLCRNPFKS----IIARSLEVMFAAEEA 318 Query: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDL 525 D + ++ G G TEAPRG+L H+ I G I Sbjct: 319 LRLIDSYIPPAQS-----------VVDYTVRAGCGHGCTEAPRGSLYHYYQIDQQGDILA 367 Query: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 Q PT N S + E + + + + + ++DPC++CSTH L Sbjct: 368 AQIAPPTAQNQSTIEQDLWQFVEEHI----DLPENQLRSQCEQVIRNYDPCISCSTHFLK 423 Query: 586 DD 587 + Sbjct: 424 LE 425 >UniRef50_D0L1P0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Gammaproteobacteria RepID=D0L1P0_HALNC Length = 518 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 59/355 (16%), Positives = 109/355 (30%), Gaps = 22/355 (6%) Query: 7 TQGYTINNAGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 + + + +RL PI + + + + ++ R +E +G Sbjct: 152 AEANMVGDDIQRLPFGPIRADVVESAQFVFHYIGEGILHYHPRLFYKHRAMEARFEGVPI 211 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 A ER+ GV + H LA A+E A+G + P A R ++ ++HL F Sbjct: 212 SAACVLAERVSGVDSVAHVLAFSQAMEAALGWQAPLRAQAWRVVLAELERLYNHLQFFGH 271 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 LA + V +A + ++ Q S V L++ ++ L N Sbjct: 272 LAKTTTLKVAEAEGIWLEE--QVKQINGRLTGSRFLRGVIVPGGLRRDLDATALIADLNA 329 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG---------------KNPHP 230 + L AN YL+ L + + A G + H Sbjct: 330 LQPQIEDYLDTLAN---TRSYLDRLLTTGVLPRQVAFDQGATGPIERASDLDRDLRRDHG 386 Query: 231 NWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWS 290 + + A+ G A R ++ + N + P + + Sbjct: 387 YALYPELQFAVPTATEGDADARARVRDQEIRQSLHLIRQ-ALNKLEPGPICRTESTIDPP 445 Query: 291 EIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQV 345 G GL + G + D + L + V P + D + Sbjct: 446 MEGMGLGWAEAVRGGLIYAVHWDAKTERLTRVKIKEPSFSNWRVFPFTVNDSNMM 500 Score = 51.8 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 50/161 (31%), Gaps = 16/161 (9%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP+ R ++ + +P + R R E + + ++ Sbjct: 367 ATGPIERASDLDRDLRRDHGYALYPELQ-FAVPTATEGDADARARVRDQEIRQSLHLIRQ 425 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA--IRDGKIDLY 526 +KL + +P P E G+G+ EA RG L + + ++ Sbjct: 426 ALNKL-----EPGPICRTESTIDP---PMEGMGLGWAEAVRGGLIYAVHWDAKTERLTRV 477 Query: 527 QCVVPTTWN-----ASPRDPKGQIGAYEAALMNTKMAIPEQ 562 + P+ N + D A A +A ++ Sbjct: 478 KIKEPSFSNWRVFPFTVNDSNMMDYAINEASFGLSVAGADR 518 >UniRef50_A3Q228 Nickel-dependent hydrogenase, large subunit n=7 Tax=Bacteria RepID=A3Q228_MYCSJ Length = 430 Score = 153 bits (385), Expect = 2e-35, Method: Composition-based stats. Identities = 68/413 (16%), Positives = 116/413 (28%), Gaps = 49/413 (11%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMER 256 E N+ + EA R + + C D G + Sbjct: 35 ELNIYEPPRFFEAFLRGRAYTEPPDITARVCGICPVAYQVSACNAIEDACGVTLDPELIE 94 Query: 257 LNLVQSIITRTADFINNVMI---------PDALAIGQFNKPWSE---------------I 292 L + ++ + PDA++ + ++ + E I Sbjct: 95 LRRLLYCGEWIHSHALHIYLLHAPDFLGYPDAISFAKDHREFLERGLALKKAGNRLMEQI 154 Query: 293 GTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHA 352 G + G F + L ++ + V D V EF DH Sbjct: 155 GGRAIHPINVRLGGFYSVPRRDELGPLAEELRRALDDALFTLRSVAEFDFPDV-EF-DHE 212 Query: 353 WYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGP 412 + R+ + +D + Q +S G GP Sbjct: 213 FLALTQPD--RYAIEDGAIVRSAGPAFPVADFSEHVREMQVPHSTALHATLDGERYLTGP 270 Query: 413 LARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDK 472 LAR ++ R +A + ++ I+ RA E +A + + Sbjct: 271 LARYSLSSAALSPTA-----RQAAAQAGLGAQCRNPFRSIVVRAVEVVYAIEEALRIIED 325 Query: 473 LMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVP 531 + G G +EAPRG L H I DG + V P Sbjct: 326 YE-----------RPARPFVDVPARAGVGHGVSEAPRGLLYHRYEIGDDGLVSAATMVPP 374 Query: 532 TTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 T N + + + N + E R++ + DPC++CS H L Sbjct: 375 TAQNQAAIEYEMGRLVA----GNLTLDDAELTSLCERSIRNHDPCISCSAHFL 423 Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 1/169 (0%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 +N R L V +TR+EG V + D V + ++ R E L+GR + Sbjct: 1 MNPEIRTLTVGALTRVEGEGALHVTLTDGVVESVELNIYEPPRFFEAFLRGRAYTEPPDI 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 R+CG+C + +++ AIEDA G+ + +R ++ W H H +H Y L D+ Sbjct: 61 TARVCGICPVAYQVSACNAIEDACGVTLDPELIELRRLLYCGEWIHSHALHIYLLHAPDF 120 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 + DA+ + E + + K+ + R + G Sbjct: 121 LGYPDAISFA-KDHREFLERGLALKKAGNRLMEQIGGRAIHPINVRLGG 168 >UniRef50_P77329 Hydrogenase-4 component G n=130 Tax=Bacteria RepID=HYFG_ECOLI Length = 555 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 104/295 (35%), Gaps = 18/295 (6%) Query: 2 STQYETQGYTINNAGRRLVVDPITRIE---GHMRCEVNINDQNVITNAVSCGTMFRGLEI 58 + + +G N+ R + V P+ GH R ++ + ++ + RG+E Sbjct: 170 TYPFINEG---NSDARVIPVGPLHITSDEPGHFRL--FVDGEQIVDADYRLFYVHRGMEK 224 Query: 59 ILQGRD-PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 + + R + +R+CG+C H++A ++E+A+GI+VP A+ IR+I+L H Sbjct: 225 LAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLH 284 Query: 118 DHLVHFYQ-LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEG 176 HL++ + + K+ +A+ L K+ R + Sbjct: 285 SHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQR 344 Query: 177 GQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF--QREIVKIHAVFGGKNPHPNWIV 234 Q + + + ++ + + HP Sbjct: 345 LQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDL------RFDHPYADY 398 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPW 289 G +P + G V + M R+ + ++N+ L G KP Sbjct: 399 GNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSYKPH 453 Score = 88.0 bits (216), Expect = 8e-16, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 64/203 (31%), Gaps = 31/203 (15%) Query: 398 IKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAH 457 + P +G L R + + D + + + R++ R Sbjct: 366 LATPNMEQRTQGIGILDRQIARDLRFDHPYADYGNIPKTLFTF---TGGDVFSRVMVRVK 422 Query: 458 EAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 E + L++ D + + E ++ +GF EAPRG HW+ Sbjct: 423 ETFDSLAMLEFALDNMPD----------TPLLTEGFSYKPHAFALGFVEAPRGEDVHWSM 472 Query: 518 I-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + + K+ ++C T N L ++ + S DPC Sbjct: 473 LGDNQKLFRWRCRAATYANWP---------VLRYMLRGNTVSD------APLIIGSLDPC 517 Query: 577 LACS--THVLGDDGSELISVQVR 597 +C+ ++ + +V + Sbjct: 518 YSCTDRVTLVDVRKRQSKTVPYK 540 >UniRef50_C6A4M9 NiFe hydrogenase II, catalytic subunit alpha n=4 Tax=Thermococcus RepID=C6A4M9_THESM Length = 416 Score = 152 bits (384), Expect = 3e-35, Method: Composition-based stats. Identities = 73/393 (18%), Positives = 131/393 (33%), Gaps = 30/393 (7%) Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNL 259 L HY + D + +I A+ + + + +N+ E + L Sbjct: 44 LTLGRHYWDVPDLEA---RICAICYLSHSVASVLGIERALGVNVPEEITLLRELGLLGEL 100 Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 ++S + + A AI +K + G++ K +Y + Sbjct: 101 IESHALHLYLLVAPDLFGYADAIRMASKHGEVVKEGITIKAFGNYIRELLGGREIH-GIN 159 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 + PGG + ++ ++ + +G I Y GD Sbjct: 160 IKPGGFGRYPTIEELEQIESQCEALLRPARRVVNIFAEQEPLGATVQHYIATNEYLYGDK 219 Query: 380 ------KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDR 433 + D + YS+ K R++GN VG L R ++ + + Sbjct: 220 LIAEDGEKFDYLEHIEEKTLPYSFAKQSRYKGNIFMVGALPRVMLKHDMLTPMAKHFYEE 279 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 L + L +A E +A K + L+ G Sbjct: 280 HKEKLASGYVSFNN-----LAQAIELLYALEKAKEVAKTLLDKGIEGENVP--------- 325 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P E G+G+ EAPRG L H I + G I + PT +N + + YE A Sbjct: 326 IEPQEGEGIGYVEAPRGVLVHHYRIDEKGNIAYSNIITPTAFNHGIME----LSLYEEAR 381 Query: 553 MNTKMAIPEQPLE-ILRTLHSFDPCLACSTHVL 584 + L+ + T+ +FDPC++CS H++ Sbjct: 382 KRYGSSDETTFLQKLEETVRAFDPCISCSVHIV 414 Score = 142 bits (358), Expect = 3e-32, Method: Composition-based stats. Identities = 70/390 (17%), Positives = 125/390 (32%), Gaps = 34/390 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + ++ TR+EG+ E+ I + V V R E++ GR D RIC + Sbjct: 4 IEIEAFTRVEGNGGAEILIENGEVKDVKVKIFEGPRFFELLTLGRHYWDVPDLEARICAI 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H++ASV IE A+G+ VP+ ++R + L H +H Y L D DA+ Sbjct: 64 CYLSHSVASVLGIERALGVNVPEEITLLRELGLLGELIESHALHLYLLVAPDLFGYADAI 123 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + S G +K F G + G H P Sbjct: 124 RMA----------------SKHGEVVKEGITIKAF--GNYIRELLGGREIHGINIKPGGF 165 Query: 199 NLMGFAHYLEALDFQ-----REIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 LE ++ Q R ++ +F + P + + + + A + Sbjct: 166 GRYPTIEELEQIESQCEALLRPARRVVNIFAEQEPLGATVQHYIATNEYLYGD-KLIAED 224 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIAND 313 E+ + + + I +P + A K + L + P + Sbjct: 225 GEKFDYL--------EHIEEKTLPYSFAKQSRYKGNIFMVGALPRVMLKHDMLTPMAKHF 276 Query: 314 FGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR-YPNDQVGRHPFDGITDP 372 + E + G V + + + L ++ +E + + V P +G Sbjct: 277 YEEHKEKLASGYVSFNNLAQAIEL-LYALEKAKEVAKTLLDKGIEGENVPIEPQEGEGIG 335 Query: 373 WYNPGDVKGSDTNIQQLNEQERYSWIKAPR 402 + YS I P Sbjct: 336 YVEAPRGVLVHHYRIDEKGNIAYSNIITPT 365 >UniRef50_C1A0H7 Putative NiFe hydrogenase alpha subunit n=2 Tax=Corynebacterineae RepID=C1A0H7_RHOE4 Length = 434 Score = 152 bits (383), Expect = 4e-35, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 113/415 (27%), Gaps = 49/415 (11%) Query: 197 EANLMGFAHYLEALDFQREIVK---IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 E N+ + E+ R+ + I + G P + ++ Sbjct: 39 ELNIYEPPRFFESFLRGRDFREPPDITSRICGICPVAYQVSACNAIEQACGAHLTQPILD 98 Query: 254 MERLNLVQSIITRTADFINNVMIPDALAIGQFNKP---------------------WSEI 292 + RL I I + PD L + I Sbjct: 99 LRRLLYCGEWIASHTLHIYLLHAPDFLGASDAIELARIARPDVERGLTLKKAGNAILDMI 158 Query: 293 GTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHA 352 G + G F L ++ V V + + Sbjct: 159 GGRSIHPVNVRLGGFYRTPTPSELAPLAEQLRWALDDALATVQWVSHFEIP----DAEVD 214 Query: 353 WYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGP 412 Q GR+ + + + Q +S G A GP Sbjct: 215 TELLALAQPGRYAIEDGVLTTTSGSSFAPEEFCDHVAERQVPHSTALHAHLDGQAYLTGP 274 Query: 413 LARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDK 472 LAR + ++ + ++ I+ RA E +A + + Sbjct: 275 LARYSLHSADLSETARQAATEAG-----LGTVCRNPFQSIVVRAVETVFAVDEALRLIRE 329 Query: 473 LMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVP 531 E P G G +EAPRG L H + +G+I + P Sbjct: 330 YY-----------RPESPYVDMSPRAATGYGVSEAPRGVLYHLYQLDSEGRILRATIIPP 378 Query: 532 TTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 T+ N + + + N + E RT+ ++DPC++C+TH L Sbjct: 379 TSQNQAAIENDLRNTLAA----NLTLTDAELTELCERTIRNYDPCISCATHFLDV 429 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 72/192 (37%), Gaps = 2/192 (1%) Query: 8 QGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRD 67 N RL + + R+EG R + V ++ R E L+GRD R+ Sbjct: 1 MDSETNTDTTRLTLGSLARVEGEGRLAFTVRHGRVEAAELNIYEPPRFFESFLRGRDFRE 60 Query: 68 AWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA 127 RICG+C + +++ AIE A G + +R ++ W H +H Y L Sbjct: 61 PPDITSRICGICPVAYQVSACNAIEQACGAHLTQPILDLRRLLYCGEWIASHTLHIYLLH 120 Query: 128 GMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW 187 D++ DA++ ++ + L + K+ + R V +LG F Sbjct: 121 APDFLGASDAIELARIARPDVERGL-TLKKAGNAILDMIGGRSIHPVN-VRLGGFYRTPT 178 Query: 188 GHPQYKLPPEAN 199 L + Sbjct: 179 PSELAPLAEQLR 190 >UniRef50_UPI0001B5108B coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Streptomyces griseoflavus Tu4000 RepID=UPI0001B5108B Length = 464 Score = 151 bits (382), Expect = 5e-35, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 91/315 (28%), Gaps = 32/315 (10%) Query: 292 IGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVD------PQQV 345 +G + G F + L ++ ++ V V D + Sbjct: 157 LGGRAVHPVSVRLGGFHRTPTRTELRPLAEGLRVALDDAWDTVQWVAGFDFPEAECEADL 216 Query: 346 QEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRG 405 + Y + P+D + Q +S R G Sbjct: 217 LALAEPGTYAIESGVPTVVPYD----ATHPAWSFPLRTFCDHVTETQVPHSTALHSRLDG 272 Query: 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQ---------STLGRILCRA 456 G LAR ++ H +E+ G + IL RA Sbjct: 273 RRHLTGSLARYAVSGHLLSPTALEAAASAGLDDPPLREGRDGTGQGTVCRNPFRSILVRA 332 Query: 457 HEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWA 516 E +A + + A G G TEAPRG L H Sbjct: 333 VEVFYAVEEALRIITEYERPASPYVPVPA-----------RSGVGHGATEAPRGLLYHRY 381 Query: 517 AIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDP 575 A +G++ + + PT N + + +AAL + + E R + + DP Sbjct: 382 AFDREGRVTDARIIPPTAQNQGAIEEDLRRSV-QAALDRGQDSEAELTRLCERVIRNHDP 440 Query: 576 CLACSTHVLGDDGSE 590 C++CS H L + Sbjct: 441 CISCSAHFLDLNLET 455 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 1/168 (0%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 + R L V +TR+EG + I+D+ V +S R E +L+GR + Sbjct: 5 PDTSRILSVPALTRVEGETALRLRIHDRTVTEARLSIYEAPRFFEALLRGRAHTEPPDLT 64 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 RICG+C + L++ A+EDA G+ V +R ++ W +H Y L D++ Sbjct: 65 SRICGICPVAYQLSACRAVEDACGVDVDGRLARLRRLLYCGEWIESQTLHIYLLHAPDFL 124 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 D + + + + + L ++ + R V G Sbjct: 125 GHDDVIGMSRSEPAHVRRGLR-LKQTGNAVVELLGGRAVHPVSVRLGG 171 >UniRef50_P16431 Formate hydrogenlyase subunit 5 n=104 Tax=Bacteria RepID=HYCE_ECOLI Length = 569 Score = 151 bits (381), Expect = 6e-35, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 109/308 (35%), Gaps = 23/308 (7%) Query: 2 STQYETQGYTINNAGRRLVVDP--ITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEI 58 + YE + + + P +T E GH R ++ +N+I + RG+E Sbjct: 165 AETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRL--FVDGENIIDADYRLFYVHRGMEK 222 Query: 59 ILQGRD-PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH 117 + + R + +R+CG+C H+ A ++E+A+GI+VP+ A +IR I+L H Sbjct: 223 LAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLH 282 Query: 118 DHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGG 177 HL++ + R + + Y ++ +++ + Sbjct: 283 SHLLNLGLACH--FTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKD 340 Query: 178 QLGIFRNGYWGHPQYKLPPEANLMGFAH-YLEALDFQREIVKIHAVFG------------ 224 + R + L+ + + R +I F Sbjct: 341 DMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHA 400 Query: 225 --GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAI 282 + HP G +P ++ ++ V + R+N V + + ++N+ + Sbjct: 401 RDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLDNLPGGPLMVE 460 Query: 283 GQFNKPWS 290 G P Sbjct: 461 GFTYIPHR 468 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 54/185 (29%), Gaps = 27/185 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+ R G A + + LP+ ++ R Sbjct: 390 VGPMVRA-----SGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNM 444 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHW-AAIRDGKIDLYQC 528 D + NL G L +GF EAPRG HW + K+ ++C Sbjct: 445 IDYGLDNLPGGPLMVEGFTYIPHR------FALGFAEAPRGDDIHWSMTGDNQKLYRWRC 498 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 T N L ++ + S DPC +C+ + D Sbjct: 499 RAATYANWP---------TLRYMLRGNTVSD------APLIIGSLDPCYSCTDRMTVVDV 543 Query: 589 SELIS 593 + S Sbjct: 544 RKKKS 548 >UniRef50_A3DNE9 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=2 Tax=Desulfurococcaceae RepID=A3DNE9_STAMF Length = 548 Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 98/281 (34%), Gaps = 20/281 (7%) Query: 13 NNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ--GRDPRDAW 69 G+R+ + P + E+ + + V+ + + RG+E + + + + Sbjct: 163 PPTGQRIPIGPYHPALHEPEYFELYVEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIP 222 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 ERICG+C VH+++ ++E A I VP+ A IR+I+L H HL+ + + Sbjct: 223 FLAERICGICGFVHSVSYTMSVERAAKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHL 282 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN----- 184 + R ++ S Y ++ ++K + ++ +N Sbjct: 283 --LGYDAGFMHTWRIREKVMVLAELLTGSRKTYGINLVGGVRKDINMDKIEAVKNTIEYI 340 Query: 185 GYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFG----------GKNPHPNWIV 234 L + + + + + K+ V + +P Sbjct: 341 RSEFKHLSDLITSISQIVKRASGTGILSRDDARKLSVVGPVARGSGLDRDVRRDYPYAAY 400 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 + + + G A + R++ V I I+ + Sbjct: 401 RDVYFKVPVYNEGDNLARLLVRIDEVFESIYILEQLIDKLP 441 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 61/186 (32%), Gaps = 26/186 (13%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR G V + ++ G L R + Y Sbjct: 378 VGPVAR-----GSGLDRDVRRDYPYAAYRDVYFKVPVYNEGDNLARLLVRIDEVFESIYI 432 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 ++L+ L G + E P G+G EAPRG + H G+ ++ Sbjct: 433 LEQLIDKLPGGPIMA------EKLEVPEGVIGIGNVEAPRGEVIHVTITGHGRPYRWRVR 486 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGS 589 PT N A + L + +A T+ S DPC +C+ ++ D Sbjct: 487 APTYQNIP---------ALKIMLRDAPLAD------APLTIASIDPCFSCTDRIVIVDLR 531 Query: 590 ELISVQ 595 + Sbjct: 532 SNRRFK 537 >UniRef50_Q2RXM4 NADH-ubiquinone oxidoreductase n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RXM4_RHORT Length = 561 Score = 148 bits (372), Expect = 7e-34, Method: Composition-based stats. Identities = 46/298 (15%), Positives = 95/298 (31%), Gaps = 20/298 (6%) Query: 1 MSTQYETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 ++T + A + V P ++ + + +I + RG+E + Sbjct: 160 ITTPLRDPLGNESKAT-IISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKL 218 Query: 60 LQG-RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHD 118 D ER+CG+C VH+ A+EDA GI++P A IR+IM+ H Sbjct: 219 SDTVLDYNQVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHS 278 Query: 119 HLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ 178 HL+ ++ L R + + + Y ++ +++ ++ Sbjct: 279 HLLWLGLAGH--YLGFDTVLMQSWRIREPIMWLVEEITGNRKTYGMNLVGGVRRDLDSAI 336 Query: 179 LGIFRNGYWG------------HPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVF 223 L +G + +A Sbjct: 337 CDKIMAAVTKIGIECEELISAVAGDESLKMRMVKVGVLSHEDARGICVVGPTARASGVHI 396 Query: 224 GGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + +P + + E G + A + R++ V+S + I + + +A Sbjct: 397 DARADYPYAAFPDLDFKPSFHEGGDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMA 454 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 52/188 (27%), Gaps = 27/188 (14%) Query: 405 GNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAG 464 VGP AR G + + +L G I R Sbjct: 380 RGICVVGPTARA-----SGVHIDARADYPYAAFPDLDFKPSFHEGGDIWARTLVRVDEVR 434 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKI 523 +++T L G + P G G EAPRG H+ +D + Sbjct: 435 SSVDLIKQMITKLPEGEIMAGFGP------IPAWREGYGIAEAPRGECVHYVQTGKDNRP 488 Query: 524 DLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 ++ T Q+ A L + + S DPC +C+ V Sbjct: 489 YRWRVRAAT---------YPQLQAVPLMLKGMSIGD------FPIIIGSIDPCFSCTERV 533 Query: 584 LGDDGSEL 591 L D Sbjct: 534 LTVDTKSK 541 >UniRef50_A1RZ40 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RZ40_THEPD Length = 537 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 78/285 (27%), Gaps = 18/285 (6%) Query: 12 INNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 ++ + V P + + ++ + ++ V G + RG+E + R Sbjct: 148 LSPESVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIF 207 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 VERICG+C+ HA V A+E + ++VP A +R ++ H H + + Sbjct: 208 LVERICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGY-- 265 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 W + L + F +++ V L Sbjct: 266 WTGFETMFMWVWGLRETIMDLLEEISGNRVHKSFVTIGGVRRDVPDALLRRVSERVETFR 325 Query: 191 QY---------------KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVG 235 + + F + P Sbjct: 326 REFESLLESLSYSEEIISRTKGIGRYSLDDARKYCAVGPVRRAAGDPFDVRRIEPYGAYP 385 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDAL 280 + + G V + R+ V + + + + + Sbjct: 386 EVEFEVPTSNEGDVYNLIRVRVKEVVESASIIQQLVEKMPSGNPV 430 Score = 91.9 bits (226), Expect = 6e-17, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 63/208 (30%), Gaps = 39/208 (18%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 RYS A ++ VGP+ R GD V ++ + + S G + Sbjct: 349 GRYSLDDARKY----CAVGPVRRA-----AGDPFDVRRIEPYGAYPEVEFEVPTSNEGDV 399 Query: 453 L----CRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP 508 R E +A +Q +K+ + K T P E EAP Sbjct: 400 YNLIRVRVKEVVESASIIQQLVEKMPSG-------NPVPPKPFMGTVP-EGEAYSRIEAP 451 Query: 509 RGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 RG L ++ + + PT N + K+ + + Sbjct: 452 RGELFYYVKANNTHNPYRVKVRTPTLANIQ---------------LAAKILEGQTLSDFP 496 Query: 568 RTLHSFDPCLACS--THVLGDDGSELIS 593 + S DPC +C ++ G Sbjct: 497 VVVTSIDPCFSCMDRVTIIDLSGKRREV 524 >UniRef50_Q9V043 Sulfhydrogenase II,alpha chain n=3 Tax=Thermococcaceae RepID=Q9V043_PYRAB Length = 415 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 61/405 (15%), Positives = 122/405 (30%), Gaps = 33/405 (8%) Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 ++ + E L R + + + + G + Sbjct: 29 VKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAICYASHSIASVRAIENALGIEVSE 88 Query: 253 NMERLNLVQSIITRTADFINNVM---------IPDALAIGQFNKPWSEIGTGLSDKCVLS 303 ++E+L + ++ PDA+++ + G + + Sbjct: 89 SVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAISMVSKYGELIKEGLTIKALGNMI 148 Query: 304 YGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGR 363 + PGG + + V+ + G Sbjct: 149 RETIAGREI---HGINVKPGGFGRYPSERELEKIAKHARALVRFARRIVNIFATQEPRGA 205 Query: 364 HPFDGITDPWYNPGDVKGSDTNIQQLNE----QERYSWIKAPRWRGNAMEVGPLARTLIA 419 + Y GD + + Q + YS+ K ++G + VG LAR L+ Sbjct: 206 KIEVPMVTSEYLWGDELIAGNDRIQYEDIEEVPVPYSFAKHSYYKGKPIFVGALARLLLK 265 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 K + +D + + L +A E +A ++L++ Sbjct: 266 GSKLEGEAKRLLDSYKEKIKSGHVIYNN-----LAQAIELVYALEVASKIAEELISEGIE 320 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPR 539 + S G+G+ EAPRG L H I + +I + PT +N Sbjct: 321 KSTCEPSE---------KSGEGIGYVEAPRGVLVHHYRIENERIVWSNTITPTAFNQGMM 371 Query: 540 DPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + A + K + ++ + +FDPC++CS HV+ Sbjct: 372 EKSLLEDA--RNMFG-KESETTLKSKLEEVVRAFDPCISCSVHVV 413 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 121/341 (35%), Gaps = 31/341 (9%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +D TR+EG + E+ I + V V R E++ GR D RIC + Sbjct: 6 IELDEFTRVEGIGKAEIVIENGTVKDARVKILEGPRFFEVLTLGRHYMDVPDLEARICAI 65 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C H++ASV AIE+A+GI+V ++ +R + L H +H Y LA D DA+ Sbjct: 66 CYASHSIASVRAIENALGIEVSESVEKLRELALWGEIIESHALHLYLLALPDVYGYPDAI 125 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + + + L+ + N +++ + G ++ G +Y E Sbjct: 126 SMVSKYGELIKEGLT---------IKALGNMIRETIAGREIHGINVKPGGFGRYPSEREL 176 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 + A R +I +F + P I +P + G +R+ Sbjct: 177 EKI----AKHARALVRFARRIVNIFATQEPRGAKIE--VPMVTSEYLWGDELIAGNDRIQ 230 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 + I V +P + A + K L+ + + Sbjct: 231 Y---------EDIEEVPVPYSFAKHSYYKGKPIFVGALARLLLKGSKLEGEAKRLLDSYK 281 Query: 319 LLMPGGAVINGDFNNVLPV-------DLVDPQQVQEFVDHA 352 + G VI + + + + + + E ++ + Sbjct: 282 EKIKSGHVIYNNLAQAIELVYALEVASKIAEELISEGIEKS 322 >UniRef50_C0GED6 Nickel-dependent hydrogenase large subunit n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GED6_9FIRM Length = 427 Score = 148 bits (372), Expect = 8e-34, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 99/326 (30%), Gaps = 26/326 (7%) Query: 260 VQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSL 319 +S+I+ DF + V + L + IG G F D+ + K Sbjct: 121 YESVISMAEDFPDEVKLALDLKRLGNDITAL-IGGREVHPVTPRVGGFSDLPSQEALKQA 179 Query: 320 LMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDV 379 A + G V + + + + +G N D+ Sbjct: 180 AERLEAALEGGMAAAKLVGGLSVP----DMSWDFTSVALSDKKEYAVNGGRLVSDNGLDI 235 Query: 380 KGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALN 439 +D S GN+ VGPLAR + + + E+ + Sbjct: 236 DPADYREFLHEAHVSPSHALHSSLSGNSFLVGPLARVNLNFDRLSGKAKEAAALTGVSF- 294 Query: 440 LPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTEC 499 ++ + R E + + D L + + Sbjct: 295 ----PSKNPFHSVDARVAELVHSIEESLEIIDALGKPVPE-----------KNGYIVRPG 339 Query: 500 RGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMA 558 G TEAPRG L H + G ++ V PT+ N + + E ++ Sbjct: 340 CGAAITEAPRGILSHSYCFNELGVVEEADIVAPTSRNVKNMEEGLRRFIPEH----LDLS 395 Query: 559 IPEQPLEILRTLHSFDPCLACSTHVL 584 E L+ + ++DPC +CS H L Sbjct: 396 DEELTLKCEMYIRNYDPCFSCSVHFL 421 Score = 141 bits (354), Expect = 8e-32, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 81/196 (41%), Gaps = 11/196 (5%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 R + VD I+R+EG +VN+ + + + ++ R + L GR R+ Sbjct: 1 MTNRSIKVDYISRLEGEAALDVNLVNGTIESLKLNVFEPPRFFQNFLVGRKYRELPDITA 60 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 RICG+C + + S+ AIE A ++V + ++R + + + H++H + LA D++ Sbjct: 61 RICGICPVSYQMTSINAIEHAFDVEVSEQTRLLRKLFALSQFIQSHVLHVFMLAAPDFLG 120 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + E+ +L + N + + G ++ G Sbjct: 121 YESVISMAEDFPDEVKLAL---------DLKRLGNDITALIGGREVHPVTPRVGGFSD-- 169 Query: 194 LPPEANLMGFAHYLEA 209 LP + L A LEA Sbjct: 170 LPSQEALKQAAERLEA 185 >UniRef50_A8VSQ7 Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) n=2 Tax=Firmicutes RepID=A8VSQ7_9BACI Length = 371 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 39/297 (13%), Positives = 89/297 (29%), Gaps = 25/297 (8%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M + +T+ T+N + P T G R ++ ++ + + G + RG E + Sbjct: 1 MPNELKTESMTLNMGPQ----HPST--HGVFRLQLEVDGETIQKATPIMGYLHRGSEKLA 54 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +G + +R+ + + IE + +VP+ A +R I + HL Sbjct: 55 EGFLYTQFIPYTDRLDYMNAMTNNYVYCQTIEKLLDWEVPERAEYLRVITMELNRIASHL 114 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 V + +D I + R + L+ + + + +K G + Sbjct: 115 VWWGTY-LLD-IGAMSPFLYAFRDRETILDRLNEISGARMTFNYHRIGGVKWDAPEGWID 172 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR----------------EIVKIHAVFG 224 ++ + L+ +A Sbjct: 173 NVL-ETVEELKHNISEFDTLVSGNEVFQARTIGVGVLSKEKVLNWGLSGPLARGSGVEVD 231 Query: 225 GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + P + + +++ G V A R+ + + N+ D + Sbjct: 232 VRKTEPYSVYDHFDFDVPVEQEGDVYARYKVRIREMHESLKIIEQACKNLPEGDIIH 288 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 9/129 (6%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GPLAR G V + + G + R + Sbjct: 220 GPLARG-----SGVEVDVRKTEPYSVYDHFDFDVPVEQEGDVYARYKVRIREMHESLKII 274 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQC-- 528 ++ NL G++ K P E EA +G +G AI +GK Y+ Sbjct: 275 EQACKNLPEGDI-IHKKGKKIMMIKPPEGEVYTRAEASKGEIG-VYAISNGKNKPYRVKL 332 Query: 529 VVPTTWNAS 537 P+ N S Sbjct: 333 RRPSFVNVS 341 >UniRef50_Q2S5J0 NADH-quinone oxidoreductase subunit D n=5 Tax=Bacteria RepID=NUOD_SALRD Length = 451 Score = 146 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 113/364 (31%), Gaps = 35/364 (9%) Query: 5 YETQGYTINNAGRRLVVDPIT------------RIEGHMRCEVNINDQNVITNAVSCGTM 52 QG A +R VDP+ G +RC V ++ + + + + G + Sbjct: 44 AAAQGDGKPPATQRSEVDPLENEMILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYL 103 Query: 53 FRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLA 112 RG+E + + + ++ + +R+ + + +A A+E I+VP+ A IR IM Sbjct: 104 HRGIEKLAEHKTYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSE 163 Query: 113 TLWCHDHLVHFYQLAGMDWIDVLDALKADPRKT------------------SELAQSLSS 154 H + + MD V + + S + + Sbjct: 164 LARISSHCLWLG-VGMMDAGAVSGFVWTFQEREEIYSIMDEVAGARFTVSHSRIGGVAND 222 Query: 155 WPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQR 214 + + D + + G + + +N W + L + + Sbjct: 223 FSPRAIEMIRDFVDTFPDRIAGWEGLLNKNRIWVERNKGVGRVTKEEALELGLTGPNLRG 282 Query: 215 EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNV 274 V + + P + I + E G A RL+ ++ + ++ + Sbjct: 283 SGV----PYDVRRFEPYLKYDEVDFTIPVREEGDCLARYFLRLDEMKQSVRIIEQCLDRM 338 Query: 275 MIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV 334 + S+ S + ++ + D+ + + G+ Sbjct: 339 TEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTVPPKGAHSYHAIEGPKGELGFY 398 Query: 335 LPVD 338 L D Sbjct: 399 LTSD 402 Score = 53.4 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 49/189 (25%), Gaps = 43/189 (22%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSA----LNLPLSGIQSTLGRILCRAHEAQWAAGK 465 GP R G V + + +P+ L R R E + + Sbjct: 276 TGPNLR-----GSGVPYDVRRFEPYLKYDEVDFTIPVREEGDCLARYFLRLDEMKQSVRI 330 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEP------------------ATWPTECRGVGFTEA 507 ++ D++ + A + E P E Sbjct: 331 IEQCLDRMTEGPIRSDDAKEAYPSKEEVYYSMEGMIHDFMYTDVGTVPPKGAHSYHAIEG 390 Query: 508 PRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI 566 P+G LG + G+ + P+ N A E L +A Sbjct: 391 PKGELGFYLTSDGTGRPWRVRINAPSFTNL---------QAMEHMLEGEMVADT------ 435 Query: 567 LRTLHSFDP 575 + + S DP Sbjct: 436 VVIIGSLDP 444 >UniRef50_A1AUU6 Ech hydrogenase subunit E n=3 Tax=Bacteria RepID=A1AUU6_PELPD Length = 409 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 18/282 (6%) Query: 14 NAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 + + + P ++ + + + ++T ++ G RG+E + R + Sbjct: 1 MSPVTIPIGPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLL 60 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ERICG+C+ H+ A + A+E+ G+ +P AN IR+++ H HL+ I Sbjct: 61 ERICGICSHTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHE--I 118 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY---WGH 189 L R + L+ + Y + +++ + Q+ + RN Sbjct: 119 GFDTLLMYSWRDRELVMDILAELGGNRVNYGINTLGGVRRDITPEQIEMIRNSVNTLEER 178 Query: 190 PQYKLPPEANLMGFAHYLEAL-DFQREIVKIHAVFGG-----------KNPHPNWIVGGM 237 +Y + A L + E + + G + P G + Sbjct: 179 TKYYIEVATEEPTLAARLAGVGYLSHEDALLLSAVGPTLRASNVDRDIRRDDPYAAYGSL 238 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 + D+ V + R+ + +N + + Sbjct: 239 DFRVITDDHCDVYGRTLVRVGELMESFRMIRQILNELPEGEV 280 Score = 83.4 bits (204), Expect = 2e-14, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 48/182 (26%), Gaps = 27/182 (14%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP R + + + GR L R E + ++ Sbjct: 212 AVGPTLRASNVDRDIRRDDPYAAYGSLDFRVITDDHCD-VYGRTLVRVGELMESFRMIRQ 270 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQ 527 ++L + + EAPRG H+ K + + Sbjct: 271 ILNELPEGEVS----------VKAPRKIPAGEACSRYEAPRGECFHYIRANGTDKPERVK 320 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 T N A + N +A + + + DPC +C+ L Sbjct: 321 VRASTFANI---------QAVAKMMENNNLAD------VPIIVAAIDPCFSCADRCLELL 365 Query: 588 GS 589 G Sbjct: 366 GE 367 >UniRef50_A8UU10 Nickel-dependent hydrogenase, large subunit n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU10_9AQUI Length = 419 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 59/399 (14%), Positives = 126/399 (31%), Gaps = 50/399 (12%) Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAV 249 P L+ RE+ + + G+ + + E + Sbjct: 65 PVAYQLTAVEAFESIFELKVPRHIRELRRAI--YCGEWVSSHSAHIFFLHLPDFYERESF 122 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPD 309 + E+ L+++ + + + + +G + G F Sbjct: 123 LELMREKRELLEAGLQIRKTGNSIIEL---------------LGGRHIHPVNIRVGGFYK 167 Query: 310 IANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGI 369 I + ++ L + + + D +++ +P Sbjct: 168 IPSAPRIENTLAEIESALPFAEKALELFLNFDYPEME----KERIFVSLGNHEVYPITEG 223 Query: 370 TDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRW-RGNAMEVGPLARTLIAYHKGDAATV 428 + +++ ++ + Q +S R G A EVG LAR + K Sbjct: 224 SAVSSEGMNIEKNEYEEYFVEYQLPHSTALYSRLKDGKAYEVGALARIYNNFGKLPQDLR 283 Query: 429 ESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTE 488 E V+ ++ ++ I+ R E +A + ++ +K + + Sbjct: 284 EKVEGVL--------PARNPFKSIIARIVEVIYALREAKHILEKFEGGEPHVEYSI---- 331 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGA 547 E GVG TEAPRG L H + G++ V PT+ N + +G Sbjct: 332 --------REGEGVGITEAPRGILYHRYRVNSKGEVVFANIVPPTSQNQRAMEEDVLLGL 383 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGD 586 + + + + + +FDPC++C++H L Sbjct: 384 -------KTLKNGDIRVLAEKLVRNFDPCISCASHFLEV 415 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 62/383 (16%), Positives = 123/383 (32%), Gaps = 35/383 (9%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + +DP+TR+EG R V + V + R E +L+G+ P V RICG+ Sbjct: 4 VRIDPLTRVEGLGRLSVLTEGEEVKDVRLEIFEPPRFFERLLKGKKPDQVIDTVARICGL 63 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + L +V A E +KVP + +R + W H H + L D+ + L Sbjct: 64 CPVAYQLTAVEAFESIFELKVPRHIRELRRAIYCGEWVSSHSAHIFFLHLPDFYERESFL 123 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG-------IFRNGYWGHPQ 191 + R+ EL ++ K+ + R V G + Sbjct: 124 EL-MREKRELLEAGLQIRKTGNSIIELLGGRHIHPVNIRVGGFYKIPSAPRIENTLAEIE 182 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 LP + + + ++E +I G +P I + + Sbjct: 183 SALPFAEKALELFLNFDYPEMEKE--RIFVSLGNHEVYP----------ITEGSAVSSEG 230 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIA 311 +N+E+ ++ +P + A+ K G + ++G P Sbjct: 231 MNIEKNEY--------EEYFVEYQLPHSTALYSRLKDGKAYEVGALARIYNNFGKLPQDL 282 Query: 312 NDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITD 371 + E G + + + +V+ H ++ + + Sbjct: 283 REKVE-------GVLPARNPFKSIIARIVEVIYALREAKHILEKFEGGEPHVEYSIREGE 335 Query: 372 PWYNPGDVKGSDTNIQQLNEQER 394 +G + ++N + Sbjct: 336 GVGITEAPRGILYHRYRVNSKGE 358 >UniRef50_C6A407 Membrane-bound hydrogenase MBH 1, subunit Mbh1L (NiFe hydrogenase catalytic subunit) n=4 Tax=Thermococcus RepID=C6A407_THESM Length = 430 Score = 146 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/193 (20%), Positives = 78/193 (40%), Gaps = 3/193 (1%) Query: 18 RLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ + PI +E + + ++ + +I + G RGLE I R+ VERIC Sbjct: 10 KIPIGPIHPALEEPEKFIITLDGERIIHVDIKLGYNLRGLEWIAMRRNYIQLLYLVERIC 69 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ H A+E+ GI+VP+ A IR I+ H HL++ + I Sbjct: 70 GICSFSHNHTYTRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGH--AIGYDT 127 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L + L + + Y + +++ +E + + + + +P Sbjct: 128 VLHLSWLARERVMDILEAIGGNRVNYAMNTIGGVRRDIEEKHKRMILDMIKHYREEVMPK 187 Query: 197 EANLMGFAHYLEA 209 + + +EA Sbjct: 188 VEEIFLYDPTVEA 200 Score = 97.7 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 27/191 (14%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQ-----STLGRILCRAHEAQWAAGK 465 GP AR V + + R++ R E + Sbjct: 220 GPTARGSGIKKDVRYNERLGVYPELGIKPITPKEFTGVIKGDVFDRMVVRVGELWQSMEI 279 Query: 466 LQYFFDKLMTN-LKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG--K 522 ++ FD++ +K + + K + A E G+G EAPRG H+ G Sbjct: 280 IEKAFDQMPEGKIKTFSKDNVTLTKLKKA----EGAGIGRYEAPRGETIHYVRANPGTDT 335 Query: 523 IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 ++ PT N A AL+ EQ ++ + S DPCL+C+ Sbjct: 336 PAKWKAREPTFPNL---------FAVARALVG------EQLADVPVAIASIDPCLSCTDR 380 Query: 583 VLGDDGSELIS 593 V D Sbjct: 381 VAIIDSETGKK 391 >UniRef50_Q6MIR5 NADH-quinone oxidoreductase subunit C/D n=1 Tax=Bdellovibrio bacteriovorus RepID=NUOCD_BDEBA Length = 560 Score = 145 bits (365), Expect = 5e-33, Method: Composition-based stats. Identities = 40/291 (13%), Positives = 99/291 (34%), Gaps = 22/291 (7%) Query: 7 TQGYTINNAGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 + G +N+ L + P T + G +R ++ + ++ G + R E + + Sbjct: 167 SPGDVLNDKYLPLNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPY 226 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV---- 121 + +R+ ++ + A+E +G+++P A +R I+ DH + Sbjct: 227 NQVIPYTDRLNYCSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGT 286 Query: 122 ----------HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK 171 FY + + L R T + + + G+F +V +K Sbjct: 287 GAMDLGALTSFFYMFGMREKVYGLFEKLCGARLTVSMTRIGGMAQDAPEGWFDEVLALVK 346 Query: 172 KFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF--QREIVKIHAV-FGGKNP 228 + +G N + + N+ + +A+ + +++ V + Sbjct: 347 EIRKG--TDEMANMVIDNKIFIQ-RTKNVCPVSAA-DAIQWGYTGPMLRACGVNLDLRKA 402 Query: 229 HPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 P + + + + +G + + R ++ + NV D Sbjct: 403 QPYYGYDALDFDVPVGTNGDIYDRYLVRFEEMRQSVRIIEQVCKNVPGGDY 453 >UniRef50_Q24ST8 Formate hydrogenlyase subunit 5 n=2 Tax=Desulfitobacterium hafniense RepID=Q24ST8_DESHY Length = 554 Score = 143 bits (361), Expect = 2e-32, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 103/310 (33%), Gaps = 24/310 (7%) Query: 14 NAGRRLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + V P+ IE GH R + + V+ +G+E +L+G+D + Sbjct: 186 EGTFEIPVGPVHAGIIEPGHFRFQT--IGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLK 243 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL-AGM 129 VER+CGVC HALA A+E G++VP R ++ ++H+ L AG+ Sbjct: 244 IVERVCGVCAVSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGV 303 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 + + + L L ++ + E L Sbjct: 304 GFALGNVNALQNKEQLQRLNHQLFGHRFLRGNITPGGVKKIPQGEERAYLQRRLAELEQD 363 Query: 190 PQYKLPPEAN---------LMGFAHYLEALDF-----QREIVKIHAVFGGKNPHPNWIVG 235 + LP G ALD I + + H + + Sbjct: 364 FEEWLPLIQEHDGFRQRAITTGVLSKQSALDLGVTGPAARASGISQDW--RERHAHLLYE 421 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTG 295 + +++ G V + M R+ V+ A+ + + D + G F + G Sbjct: 422 ELKMEPQVEQEGDVWSRLMVRVREVKQSFALLAELLEGDFLQDTVEQGDF--DLNGSGAF 479 Query: 296 LSDKCVLSYG 305 ++G Sbjct: 480 SPQPYSFAWG 489 Score = 67.2 bits (162), Expect = 2e-09, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 49/173 (28%), Gaps = 22/173 (12%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP AR + + R++ R E + + L Sbjct: 398 TGPAARASGISQDWRERHAHLLYEELKMEPQVEQEGD-VWSRLMVRVREVKQSFALLAEL 456 Query: 470 FDK--LMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLY 526 + L ++ G+ + + P G E+PRG W + D GKI Sbjct: 457 LEGDFLQDTVEQGDFDLNGSGAFSPQ---PYSFAWGCAESPRGTDVIWLMLDDEGKIYRC 513 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 + + N + A A+ + SF+ C +C Sbjct: 514 RIRSASYANWA---------AVPLAVQGNIVPD------FPLINKSFELCYSC 551 >UniRef50_Q1AVI6 NADH-quinone oxidoreductase subunit D n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=NUOD_RUBXD Length = 396 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 26/313 (8%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + ++ G + R E I + R +R+ + Sbjct: 49 HGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDYFANMHNEHGY 108 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A+ED +G+++P A IR +M + HL L + + + R+ Sbjct: 109 CLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFL--LLELGAFTPILYAFRERER 166 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 + + + + + +K + G + P +L+ Sbjct: 167 IQNFFEAVTGARMMFHYIRIGGVKADLPPDIPEKIWEYVEGLEKRIKPDFIDLIEGNEIF 226 Query: 208 EALDFQREIVKIHA------------------VFGGKNPHPNWIVGGMPCAINIDESGAV 249 ++ R I ++ F + +P + + + D +G V Sbjct: 227 --IERTRGISRLTQEEAIELGLTGPPLRCTGVAFDVRRDYPYSVYPELDFEVVTDTAGDV 284 Query: 250 GAVNMERLNLVQSIITRTADFINNVMIPDAL-AIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 A R+ V I + + + + +G+ +P G G + G F Sbjct: 285 EASYRVRIKEVYESIKIIRQCLEKMPEGEVMGDVGRRVRPPEGEGFGRVEGPR---GEFA 341 Query: 309 DIANDFGEKSLLM 321 G + Sbjct: 342 VHVVSDGSDTPYR 354 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 36/152 (23%), Gaps = 10/152 (6%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R SV + + + R E + ++ Sbjct: 247 TGPPLRCTGVAFDVRRDYPYSVYPELDFEVVTDTAGD-VEASYRVRIKEVYESIKIIRQC 305 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL-GHWAAIRDGKIDLYQC 528 +K+ G++ P E G G E PRG H + Sbjct: 306 LEKMPEGEVMGDVG--------RRVRPPEGEGFGRVEGPRGEFAVHVVSDGSDTPYRVHY 357 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 P+ N K + + P Sbjct: 358 RDPSFVNMQLLQEKMPGHYLPDIMPIMGLVDP 389 >UniRef50_Q8U0Z6 Mbh12 membrane bound hydrogenase alpha (NADH dehydrogenase) n=3 Tax=Pyrococcus RepID=Q8U0Z6_PYRFU Length = 427 Score = 143 bits (359), Expect = 3e-32, Method: Composition-based stats. Identities = 61/357 (17%), Positives = 113/357 (31%), Gaps = 34/357 (9%) Query: 18 RLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ PI +E + + ++ + ++ V G RG++ I R+ ER+C Sbjct: 9 KIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIMYLAERMC 68 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL---------------V 121 G+C+ H V A+E+ GI+VP+ A IR I+ H HL + Sbjct: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHDIGYDTVL 128 Query: 122 HFYQLAGMDWIDVLDALKADPRKTS---------ELAQSLSSWPKSSPGYFFDVQNRLKK 172 H LA +DVL+A+ + S ++ + Y+ +V +++ Sbjct: 129 HLTWLARERVMDVLEAVSGNRVNYSMVTIGGVRRDIGEKQKRLILDMIKYYREVLPQIED 188 Query: 173 FVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVF---GGKNPH 229 R KL E +G + + V+ G K Sbjct: 189 VFLHDSTIEARLRDVAVVPKKLAIEMGAVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVT 248 Query: 230 PNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPW 289 P + G D L+L++ + + + D + + + Sbjct: 249 PEDVTGEKARGDVYDRMAVRIGELWMSLDLLEHALDQMPEGKIKTFPKDNILVAKLKLLG 308 Query: 290 SEIGTGLSDKCVLSYGAF------PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLV 340 G G + + D + + P I DLV Sbjct: 309 DGEGIGRYEAPRGELVHYVRGQKGRDGPVRWKPREPTFPNLFTIAKALEGNELADLV 365 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 26/196 (13%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQ------STLGRILCRAHEAQWA 462 VGP AR + V + + + R+ R E + Sbjct: 216 AVGPTARGSGIKEDSRWSEQLGVYPDLGIKPVTPEDVTGEKARGDVYDRMAVRIGELWMS 275 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK 522 L++ D++ + G+G EAPRG L H+ + G+ Sbjct: 276 LDLLEHALDQMPEG--KIKTFPKDNILVAKLKLLGDGEGIGRYEAPRGELVHYVRGQKGR 333 Query: 523 --IDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 ++ PT N AL ++A ++ + S DPCL+C+ Sbjct: 334 DGPVRWKPREPTFPNL---------FTIAKALEGNELAD------LVVAIASIDPCLSCT 378 Query: 581 THV-LGDDGSELISVQ 595 V + +G +++ + Sbjct: 379 DRVAIVKEGKKVVLTE 394 >UniRef50_B6YU98 Membrane bound hydrogenase, NiFe-hydrogenase large subunit 2 n=5 Tax=Euryarchaeota RepID=B6YU98_THEON Length = 426 Score = 142 bits (357), Expect = 4e-32, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 110/334 (32%), Gaps = 28/334 (8%) Query: 18 RLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ PI +E + + ++ + ++ V G RGL+ I R+ ERIC Sbjct: 10 KIPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGLQWIAYRRNYVQIMYLAERIC 69 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL---------------V 121 G+C+ H A+E+A GI+VP+ A IR I+ H HL + Sbjct: 70 GICSFSHNHTYTRAVEEAAGIEVPERAEYIRAIIGELERVHSHLLNLGVLGHDIGYDTVL 129 Query: 122 HFYQLAGMDWIDVLDALKADPRKTS---------ELAQSLSSWPKSSPGYFFDVQNRLKK 172 H LA +DVL+A+ + S ++ + Y+ + ++++ Sbjct: 130 HLTWLARERVMDVLEAISGNRVNYSMVTIGGVRRDIDEKGKRLILDMIKYYRSIMPQIEE 189 Query: 173 FVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVF---GGKNPH 229 R ++ E +G L + V+ G K Sbjct: 190 VFLHDPTIEARLRDCAVISKRVALEQGAVGPTARASGLKVDARWSERLGVYPDLGVKPVM 249 Query: 230 PNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPW 289 P + G P D + + L++++ + + + D + + + Sbjct: 250 PQDVTGEKPHGDVFDRAAVRIGEIYQSLDMLEHALDQMPEGKIKTFPKDNILVAKLKIMV 309 Query: 290 SEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPG 323 G G + + + P Sbjct: 310 DGEGIGRYEAPRGELVHYVRGKKGSDKPLRWKPR 343 Score = 106 bits (263), Expect = 3e-21, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 26/196 (13%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNL------PLSGIQSTLGRILCRAHEAQWA 462 VGP AR + V + + R R E + Sbjct: 217 AVGPTARASGLKVDARWSERLGVYPDLGVKPVMPQDVTGEKPHGDVFDRAAVRIGEIYQS 276 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG- 521 L++ D++ + G+G EAPRG L H+ + G Sbjct: 277 LDMLEHALDQMPEG--KIKTFPKDNILVAKLKIMVDGEGIGRYEAPRGELVHYVRGKKGS 334 Query: 522 -KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 K ++ PT N A + ++A + + S DPCL+C+ Sbjct: 335 DKPLRWKPREPTFPNL---------FAVAKGVTGDQVAD------FVLAVASIDPCLSCT 379 Query: 581 THV-LGDDGSELISVQ 595 V + DG + I + Sbjct: 380 DRVAVVQDGKKRILTE 395 >UniRef50_B5YL34 NADH-quinone oxidoreductase subunit D 2 n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=NUOD2_THEYD Length = 401 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 44/356 (12%), Positives = 103/356 (28%), Gaps = 29/356 (8%) Query: 5 YETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR 63 ET+ +++ L + P G ++ + VI G + RG+E + + + Sbjct: 2 GETEIEKVSDTTFVLQMGPHHPATHGVLKLLCEFEGERVINIKPDVGYLHRGVEKLSESK 61 Query: 64 DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 A +R+ + + + + A+E +GI+ P A IR ++ HL+ Sbjct: 62 TYPGAMTLTDRLDYISSMTNNIGYCLAVERLMGIEPPPRAKFIRTMVSEMTRLSSHLLWL 121 Query: 124 YQLAGMDWIDVLDALKADPRKTSELAQSLSSWPK-------------------SSPGYFF 164 +D I + R+ ++ Q + Sbjct: 122 -ATHALD-IGAMTVFLYAFREREQILQFFEKICGARLTVSYPRIGGVRVDIKEHVLDEIY 179 Query: 165 DVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFG 224 + + V+ + + N W + A L + V + Sbjct: 180 KFMDLMLIRVDEYETLLTENRIWIARTRGVGVIAPEDAVLLGLTGPALRGSGV----YYD 235 Query: 225 GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQ 284 + P + + + E G + R+ ++ + I + L+ Sbjct: 236 IRKQIPYDAYSEIDFEVPLGEKGDTYDRYLCRIREMRQSVLIVKQCIEKMPEGKILSDKS 295 Query: 285 FNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLV 340 + + + F + + K +MP G + + + Sbjct: 296 PDIDLPHQAKRKIEPGDSLWNGFIAFSEE---KQEIMPKGEIYSAIEAPKGELGFY 348 Score = 51.4 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 25/170 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R Y+ +PL T R LCR E + + ++ Sbjct: 223 TGPALRGSGVYYDIRKQI-PYDAYSEIDFEVPLGEKGDTYDRYLCRIREMRQSVLIVKQC 281 Query: 470 FDKLMTN------LKNGNLATASTEKWEPA---------------TWPTECRGVGFTEAP 508 +K+ + +L + K EP + EAP Sbjct: 282 IEKMPEGKILSDKSPDIDLPHQAKRKIEPGDSLWNGFIAFSEEKQEIMPKGEIYSAIEAP 341 Query: 509 RGALGHWAAIRD-GKIDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMNT 555 +G LG + G+ + P+ + S P+ +G + A A++ T Sbjct: 342 KGELGFYIVSDGSGRPYRMRVRAPSFIHISAIPKLCEGHLLADVIAIIGT 391 >UniRef50_B1VSH7 NADH-quinone oxidoreductase subunit D 2 n=6 Tax=Actinomycetales RepID=NUOD2_STRGG Length = 394 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 10/245 (4%) Query: 1 MSTQYETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 M+ G + L + P G +R + ++ + V G M RG E + Sbjct: 15 MTETTIGIGGAAESTDMVLNIGPQHPSTHGVLRLRIVLDGERVQHAEPVIGYMHRGAEKL 74 Query: 60 LQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 + RD R R + + L V A+E +G++VP+ A R ++ +H Sbjct: 75 FEARDYRQIIMLANRHDWLSAFSNELGVVMAVERMLGMEVPERAVWTRTLLAELNRVLNH 134 Query: 120 LVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL 179 L+ + + + + R+ EL + Y F+ LK+ V G Sbjct: 135 LMFLG--SYPLELGGITPVFHAFREREELQAVMEEVSGGRMHYMFNRVGGLKEDVPAGWA 192 Query: 180 GIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPC 239 G R+ + ++ NL+ + R + V H + G + Sbjct: 193 GRVRDAV-ASVRSRMDVYENLVLGN------EIFRGRTRDVGVLSAAAVHAYGVSGPIAR 245 Query: 240 AINID 244 A +D Sbjct: 246 ASGVD 250 >UniRef50_Q2FTW4 Membrane bound hydrogenase subunit mbhL n=3 Tax=Euryarchaeota RepID=Q2FTW4_METHJ Length = 409 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 101/299 (33%), Gaps = 20/299 (6%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 L + PI ++ + +N + + + G RG+E + R+P +RICG Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICG 69 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C HAL A+E I+VPD A +R I+ H++ A D L Sbjct: 70 ICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLFY 129 Query: 138 LKADPRKTS-ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 L R+ S ++ + ++ + R +L Y G + + Sbjct: 130 LAWQIREESVDVIEYITGNRVNYGIMMLGGTRRDITADMFPRLEQALQYYEGLLEKMVNL 189 Query: 197 EANLMGFAHYLE--ALDFQREIVKIHAV----------FGGKNPHPNWIVGGMPCAI--- 241 N A + + +R +++ V + P G + I Sbjct: 190 FLNDKTIAMRCKDTGILTKRRALELATVGPTSRASGLAMDVRIDSPYAAYGDLDFDIVLP 249 Query: 242 ---NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 N + +G V + R+ ++ I + + LA ++ K + Sbjct: 250 DVYNSEGNGDVYDRIIVRIFEIKQSIDIIRQCMKQMPEGPVLAEEKYAKLLMNLKKASG 308 Score = 99.2 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 65/193 (33%), Gaps = 23/193 (11%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS-----TLGRILCRAHEAQWAAG 464 VGP +R + + + + S RI+ R E + + Sbjct: 217 VGPTSRASGLAMDVRIDSPYAAYGDLDFDIVLPDVYNSEGNGDVYDRIIVRIFEIKQSID 276 Query: 465 KLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKID 524 ++ ++ LA K EAPRG H+ + +GK + Sbjct: 277 IIRQCMKQMPEG---PVLAEEKYAKLLMNLKKASGEAFARVEAPRGEDMHYVRM-NGKQE 332 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS--TH 582 P W K + Y + ++ EQ +I + S DPC++C+ Sbjct: 333 -----APEMW-------KVKASTYSNQMAWVEILQGEQIADIPIIVASIDPCMSCTDRVA 380 Query: 583 VLGDDGSELISVQ 595 V+G DG+ I + Sbjct: 381 VVGQDGNAGIMTK 393 >UniRef50_Q1IS59 NADH-quinone oxidoreductase subunit D 1 n=2 Tax=Acidobacteria RepID=NUOD1_ACIBL Length = 381 Score = 141 bits (355), Expect = 7e-32, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 103/299 (34%), Gaps = 24/299 (8%) Query: 6 ETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 ++ +N + P T G +R + ++ + V+ G + RG+E I + R Sbjct: 19 DSNELVLNMGPQ----HPST--HGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTY 72 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 +V+R+ V + L A+E I ++ P A +R I+ H+V Sbjct: 73 VQFNPYVDRMDYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGT 132 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSS-PGYFFDVQNRLKKFVEG-------- 176 +D I L L R E+ + + + + F + + + EG Sbjct: 133 -HALD-IGALTPLFYTFRDREEVLKIFEKYCGARLTTHAFRIGGCIYEAYEGFEKDVLDY 190 Query: 177 -GQLGIFRNGYWG-HPQYKLPPEANLMGFAHYL---EALDFQREIVKIHAV-FGGKNPHP 230 +LG + Y G ++ + +AL +++ V + + P Sbjct: 191 CDKLGPRIDEYEGLLTGNRIWLQRTKGIGILNAADCKALGVTGPVLRAAGVKWDLRKAQP 250 Query: 231 NWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI-PDALAIGQFNKP 288 + + E+G M R+ ++ I + + P + + KP Sbjct: 251 YAAYDQVDFDVPTGENGDTFDRYMVRMQEMRQSIRILRQAVEKLPAGPTMAKVPKVLKP 309 Score = 60.7 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 11/145 (7%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+ R ++P T R + R E + + L+ Sbjct: 232 TGPVLRAAGVKWDLRK-AQPYAAYDQVDFDVPTGENGDTFDRYMVRMQEMRQSIRILRQA 290 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQC 528 +KL + K P R EAP+G LG++ + + Sbjct: 291 VEKLPAG--------PTMAKVPKVLKPPVGRIYHSIEAPKGELGYFIVSDGSLQPYRVRV 342 Query: 529 VVPTTWNASPRDPKGQIGAYEAALM 553 P+ N D K GA A ++ Sbjct: 343 RPPSFVNLQALD-KMVRGALIADVV 366 >UniRef50_A6DBU3 Nickel-dependent hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DBU3_9PROT Length = 386 Score = 141 bits (355), Expect = 8e-32, Method: Composition-based stats. Identities = 69/392 (17%), Positives = 124/392 (31%), Gaps = 64/392 (16%) Query: 204 AHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSI 263 H+L+AL +I + G H + + ++ A + + I Sbjct: 46 RHFLDALVIN---PRICGICG----HAHLLATAKAIENALNLKITKKAEILRDITSGLEI 98 Query: 264 ITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPG 323 I + + P + + I +S + G FP S ++PG Sbjct: 99 IQNHIKWFYLTLYPTQIKDKSYILKALNIVKKISKIIAIIGGQFP-------HNSYIIPG 151 Query: 324 GAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSD 383 G + +++ + + ++++E + Y ++ H + + + Sbjct: 152 GVTCDLTNLDIIKIKNL-LKKLREDI----YTIIDENGKSHDLEKFFENLPKNIGKSLNK 206 Query: 384 T-------------NIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVES 430 + E S+ K + EVGPLAR L Sbjct: 207 FLVLGDNLFFKPNGTFTNVKEFSNNSFFKNVLYNEEYYEVGPLARNLQNKTINT------ 260 Query: 431 VDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKW 490 + S RI R +E L + L ++ S + Sbjct: 261 ---------IYEKYQDSIYTRIFARLYEILLIINYLIKEIEDL-------DITQKSFLNY 304 Query: 491 EPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEA 550 + T GV EAPRG+L H I + KI Y V+P+ + S K + A + Sbjct: 305 KKRTC---GSGVSVIEAPRGSLIHKIKIENEKIKFYDIVMPSQFYLSN-GTKEKPSASQM 360 Query: 551 ALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 AL+ ++ + FD C C TH Sbjct: 361 ALIREEIKFIDT------IFKCFDICAVCVTH 386 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 EG ++ D +I +RG+E L R DA RICG+C H LA+ Sbjct: 12 EGEAELKIYQKD-GIIDFVEIFFWQYRGIEQYLVNRHFLDALVINPRICGICGHAHLLAT 70 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM----DWIDVLDALKADPR 143 AIE+A+ +K+ A I+R+I +H+ FY D +L AL + Sbjct: 71 AKAIENALNLKITKKAEILRDITSGLEIIQNHIKWFYLTLYPTQIKDKSYILKALNIVKK 130 Query: 144 KTSELAQSLSSWPKSSP 160 + +A +P +S Sbjct: 131 ISKIIAIIGGQFPHNSY 147 >UniRef50_B3VS74 NADH-ubiquinone oxidoreductase chain 49kDa n=4 Tax=Bacteria RepID=B3VS74_DESVM Length = 358 Score = 141 bits (354), Expect = 9e-32, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 17/278 (6%) Query: 19 LVVDPITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + P + + ++ + D+ ++ + G + RGLE + RD VER+CG Sbjct: 6 IPFGPQHPVLPEPLHLKLVVEDETIVEAIPALGYVHRGLETLASIRDYNQMVYIVERVCG 65 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ +HA+ +E + ++VP A +R I H HL+ A D Sbjct: 66 ICSCIHAMCYCQGLETMMNVEVPSRAKYLRVIWSELHRIHSHLLWLGLFA--DGFGFESL 123 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG--------- 188 + + + + +V +++ ++ Q + Sbjct: 124 FMQFWKIRERVMDINEATAGNRVVISVNVVGGVRRDLDKTQQRWILDELDKLEKELRQLM 183 Query: 189 ---HPQYKLPPEANLMGFAHYLEALDFQRE--IVKIHAVFGGKNPHPNWIVGGMPCAINI 243 Y + +G +A+ ++ V + Sbjct: 184 KTMLDDYTVKKRTVGVGVLTAEQAIQLGAVGPTLRGSGVAQDARQLGYAAFDELDFEPVT 243 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 G A + R + I+ + + A Sbjct: 244 SPEGDSWARSKVRFMETLQSMDIVRQAISRLPDSELAA 281 Score = 79.2 bits (193), Expect = 5e-13, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 49/175 (28%), Gaps = 29/175 (16%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP R + D + S + R R E + ++ Sbjct: 212 AVGPTLRGSGVAQDARQLGYAAFDEL--DFEPVTSPEGDSWARSKVRFMETLQSMDIVRQ 269 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQ 527 +L +E V E PRG L ++ K ++ + Sbjct: 270 AISRL-----------PDSELAAKVPGKPTGEVVCRVEQPRGELLYYLKGNGSKNMERVR 318 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 PT N P A L ++A + + DPC++C+ Sbjct: 319 IRTPTFANIPP---------LLAMLPGAQLAD------VPIAALTIDPCISCTER 358 >UniRef50_B8DS05 NADH dehydrogenase (Quinone) n=7 Tax=Deltaproteobacteria RepID=B8DS05_DESVM Length = 406 Score = 141 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 86/277 (31%), Gaps = 35/277 (12%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R + ++ + ++ G + R E + + + P + R+ + Sbjct: 54 HPST--HGVLRVLLELDGEYIVRAEPVLGYLHRMHEKMAEVKTPAQFMPNMGRVDYLHAL 111 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF--YQLAGMDWIDVLDALK 139 A V A+E GI++P+ A +R I HL+ + Y L + ++ A Sbjct: 112 AWNWAYVGAVEKLAGIEIPERAEYLRVITCELNRISSHLLWWGAYLLDLGAFTPIMYAFD 171 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEAN 199 L S S F V G + H + +LP Sbjct: 172 DREMLLDLLQLMTGSRLTYSSFRFGGVYTDASPAFVQG-----VRQFIPHLRSRLP---- 222 Query: 200 LMGFAHYLEALDFQREIVK-------IHAVFGGKNP--------------HPNWIVGGMP 238 M A E + +R I + + +G P P + Sbjct: 223 -MYTALVTENIILRRRIEEVGVIPQDMVTRYGASGPVARGSGIAYDVRRAEPYSVYDRFD 281 Query: 239 CAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 I + A M R+ ++ + I N+ Sbjct: 282 YEIPVRHEECSMARYMVRMAEIEQSLRIVEQAIENLP 318 Score = 55.3 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 46/264 (17%), Positives = 82/264 (31%), Gaps = 23/264 (8%) Query: 296 LSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYR 355 +L GAF I F ++ +L+ ++ G A Sbjct: 152 WWGAYLLDLGAFTPIMYAFDDREMLLDLLQLMTGSRLTYSSFRFGGVY------TDASPA 205 Query: 356 YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLAR 415 + P P Y V + +++ E R+ GP+AR Sbjct: 206 FVQGVRQFIPHLRSRLPMYTAL-VTENIILRRRIEEVGVIPQDMVTRYG----ASGPVAR 260 Query: 416 TL-IAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 IAY A DR +P+ + ++ R + R E + + ++ + Sbjct: 261 GSGIAYDVRRAEPYSVYDRF--DYEIPVRHEECSMARYMVRMAEIEQSL----RIVEQAI 314 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQCVVPTT 533 NL +G +P+ E RG +G W A GK + P Sbjct: 315 ENLPDGEHMHPKAP--KPSFKLPAGESYFAVEGARGKIGVWIASDGGKTPYRVKLRAPGF 372 Query: 534 WNAS--PRDPKGQIGAYEAALMNT 555 N + +G + A A++ + Sbjct: 373 SNLALFAECARGTLLADAVAILGS 396 >UniRef50_B5YKI5 NADH-quinone oxidoreductase subunit D 1 n=12 Tax=Bacteria RepID=NUOD1_THEYD Length = 397 Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats. Identities = 41/286 (14%), Positives = 89/286 (31%), Gaps = 23/286 (8%) Query: 11 TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 T+N + P T G +R + + + + G + RG+E + + + Sbjct: 12 TVNMGPQ----HPAT--HGVLRLVLELEGEVIKKCIPYIGYLHRGVEKLSEDLTYVQSLP 65 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +R+ + + V+ + A+E +GI++P+ A IR IM HLV +D Sbjct: 66 ITDRMDYLSSMVNNVGFCVAVEKLMGIQIPERAKFIRTIMGEMARICSHLVWI-ATHALD 124 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYF------------FDVQNRLKKFVEGGQ 178 I + R L + + + ++ KF+E Sbjct: 125 -IGAMTVFLYAMRDREYLLELFEMVTGARLTVSYPRVGGVRCDVNNEFLDKTYKFIEEFP 183 Query: 179 LGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVFGGKNPHPNWIVG 235 + +G EA+++ + + + P Sbjct: 184 RKVEEYETLIDRNRVWLKRTKGVGVISAEEAINWGLTGPTLRGSGVYYDVRKFFPYDAYD 243 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + + + ++G + R+ + I + LA Sbjct: 244 KVDFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQCIERLPDGSILA 289 Score = 51.4 bits (121), Expect = 1e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 36/144 (25%), Gaps = 22/144 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R Y+ +PL R CR E + +A ++ Sbjct: 220 TGPTLRGSGVYYDVRKFFPYDAYD-KVDFEVPLGKNGDIYDRYKCRMLEFRQSAKIIKQC 278 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTE--------------------CRGVGFTEAPR 509 ++L A P + EAPR Sbjct: 279 IERLPDGSILAENALRIRMPESPLKIDKKDIIFDVYIEDKQIQEFIQKFTEVYASVEAPR 338 Query: 510 GALGHWAAIRD-GKIDLYQCVVPT 532 G LG + + K + P+ Sbjct: 339 GELGFYIVCDNSSKPYRMRVRAPS 362 >UniRef50_B2V8J2 NADH-quinone oxidoreductase subunit C/D n=15 Tax=Aquificales RepID=NUOCD_SULSY Length = 576 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 48/348 (13%), Positives = 103/348 (29%), Gaps = 36/348 (10%) Query: 7 TQGYTINNAGRRLVV--DPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR 63 TQ + ++V+ P+ G + +++ + V + G + RG+E + + Sbjct: 190 TQKKRMPVKTSQIVLNWGPLHPGTHGTIWFLFDLDGEYVKQCDIIIGQLHRGVEKLGENV 249 Query: 64 DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 + + + +R+ + A V A E +GI+VP+ A IR +M + HL+ Sbjct: 250 NWQQFIPYTDRMDYIAAINENHAYVLAAEKMLGIEVPEKAKWIRTMMAELSRINSHLLWL 309 Query: 124 YQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFR 183 A + L R+ ++ + + + + + G L Sbjct: 310 GTYALD--LGALTMFLYTFREREKIMDIIEGITGARFTINYFRIGGVFADLPYGALDAI- 366 Query: 184 NGYWGHPQYKLPPEANLMGFAHYLEALDFQR--------------------EIVKIHAVF 223 H LP N + R + Sbjct: 367 ----EHLIKDLPQRINDYETLLTRNRVWLSRNKDVCVITEEDVYQYGLTGAVARGSGVPY 422 Query: 224 GGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFI---NNVMIPDAL 280 + G + I + E G + R+ ++ I I + D Sbjct: 423 DVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRIIEQCIAKLRKMSKDDPY 482 Query: 281 AIGQFNKPWSEI---GTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGA 325 ++ ++ G G+ +Y + + + G G Sbjct: 483 FFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIYNKKDGL 530 Score = 46.4 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 59/180 (32%), Gaps = 35/180 (19%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSA----LNLPLSGIQSTLGRILCRAHEAQWAAGK 465 G +AR G V +D+ + ++P+ + R L R E + + Sbjct: 411 TGAVAR-----GSGVPYDVRKIDKYDAYGEVEFDIPVGEKGDSYDRYLVRMEEMRQSIRI 465 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGV----GFTEA----PRGALGHW-A 516 ++ KL + + T + + RG+ G T A PRG LG + Sbjct: 466 IEQCIAKLRK-MSKDDPYFFQTPDEKKLKVTIDGRGMKLPAGETYASSDNPRGELGFYIY 524 Query: 517 AIRDG-KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDP 575 +DG K + +N + A++ +A L + DP Sbjct: 525 NKKDGLKAHRMRIRSGAFYNL---------QVFTKAIIGRPIADAITLLS------TIDP 569 >UniRef50_A4TYL3 Hydrogenase expression/formation protein HupK n=2 Tax=Magnetospirillum RepID=A4TYL3_9PROT Length = 381 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 58/316 (18%), Positives = 97/316 (30%), Gaps = 54/316 (17%) Query: 287 KPWSEIGTG---LSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQ 343 + W + G L + + + L PGG + D + + Q Sbjct: 100 RDWPALAGGQPRLDHAKRIRGALAGLRGTLYPQGDWLSPGGGTLTADCDRICAAIDQARQ 159 Query: 344 QVQEFVDHA------------WYR----YPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQ 387 + + + H W + V + GI + P G Sbjct: 160 AITQLMGHDIDELVLPIAFQAWLERDPTHLPGLVQAKGWAGIGAAPFLPMPEMGPPDLAA 219 Query: 388 QLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQS 447 ++ ++ P G E G LA + + +DR + L Sbjct: 220 RMATDRDGQYLARPDCAGRVFETGSLA-----HWSWHPLISDLMDRFGAGL--------- 265 Query: 448 TLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEA 507 L R+ R +++ L + + G+ TEA Sbjct: 266 -LPRLAARLVALAEGLREMEELVRDLK-------------PEPACSLPGLSGEGLTLTEA 311 Query: 508 PRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 RG L H + DGKI YQ + PT WN P G AL A P+ + Sbjct: 312 ARGLLAHRVVLNDGKISQYQILAPTEWNFHPE------GPLARALHGLP-AGPDLEWKAR 364 Query: 568 RTLHSFDPCLACSTHV 583 +++ DPC+AC+ + Sbjct: 365 LLINALDPCVACAITL 380 Score = 48.4 bits (113), Expect = 9e-04, Method: Composition-based stats. Identities = 23/176 (13%), Positives = 50/176 (28%), Gaps = 18/176 (10%) Query: 31 MRCEVNINDQNVITNAVSCGTMFRGLE--IILQGRDPRDAWAFVERICGVCTGVHALASV 88 + + + D V A R ++ + R P + + + +C A+ + Sbjct: 7 LSVSLRVRDGAV---AAVLIRSTRMVQAARLFAKRPPTEVLHLLPTVFSLCGTAQAVTGL 63 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW---------IDVLDALK 139 A+E A I R +++ +H DW +D ++ Sbjct: 64 NAMEKAAAITASPAQKAARTLLVLAETVTEH----GLTIARDWPALAGGQPRLDHAKRIR 119 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 W G +R+ ++ + I + + LP Sbjct: 120 GALAGLRGTLYPQGDWLSPGGGTLTADCDRICAAIDQARQAITQLMGHDIDELVLP 175 >UniRef50_C7N626 Ech hydrogenase subunit E n=25 Tax=cellular organisms RepID=C7N626_SLAHD Length = 362 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 91/272 (33%), Gaps = 16/272 (5%) Query: 19 LVVDPITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + P + + ++ + D+ VI G + RGLE +++ +D ERICG Sbjct: 7 IPFGPQHPVLPEPLHLDLVVQDEKVIEVIPQIGFIHRGLEKLVEKKDIHQFIYVAERICG 66 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ H+L +E +G++VP A +R I+ H HL+ LA + Sbjct: 67 ICSFGHSLGYAETVEKLMGVEVPRRAEYLRVILHELSRIHSHLLWLG-LAADAFGFEALF 125 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFV--EGGQLGIFRNGYWGHPQYKLP 195 + + + L ++ + ++ E Q+ +G + Sbjct: 126 MHSWRIRERVLDIFEATTGGRVILSAVQIGGVIRDIDDEELKQISATLDGMRSEYAELMA 185 Query: 196 PEANLMGFAHYLEAL-DFQREIVKIHAVFGG--KNPH--------PNWIVGGM-PCAINI 243 N L + + + + G + + N G + + Sbjct: 186 TFLNDTSVRSRLVNVGRLTQTQAEDLCMVGPFARASNVKFDCRMLGNGAYGELENFQPIL 245 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVM 275 D+ G A R V I + I + Sbjct: 246 DDEGDCYARVRVRCKEVIQSIDIIQELIAKIP 277 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 54/176 (30%), Gaps = 26/176 (14%) Query: 408 MEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQ 467 VGP AR + + + + R+ R E + +Q Sbjct: 212 CMVGPFARASNVKFDCRMLGNGAYGELENFQPILDDEGD-CYARVRVRCKEVIQSIDIIQ 270 Query: 468 YFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLY 526 K+ + + T P + E PRG ++A K ++ Sbjct: 271 ELIAKIPHDGIG---------ERSKLTPPDGAQAANVLEQPRGECYYYARGNGSKNLERM 321 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 + PT+ N + AA ++A + L + DPC++C+ Sbjct: 322 RMRTPTSQNLAG---------LVAACEGAELAD------VPNILLTIDPCISCTER 362 >UniRef50_A1ASR5 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A1ASR5_PELPD Length = 557 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 95/308 (30%), Gaps = 19/308 (6%) Query: 3 TQYETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 + E + P ++ + ++ + V + RG+E + + Sbjct: 157 EEREFDFDETPPGCTAVPFGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSE 216 Query: 62 G-RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 D ERICG+C VH+LA A+E+ G+ VP A IR IML H H Sbjct: 217 SVLGYNDVPMMAERICGICGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHP 276 Query: 121 VHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 + + D L R + + Y + ++ + Sbjct: 277 MWVGLACHLVGFDTLFMQAW--RIREPIMWLAEKITGNRKTYGLGIIGGVRWDFTPELIA 334 Query: 181 IFRNGY------WGHPQYKLPPEANLM----GFAHYLEALDFQREIVKIHAVFGG----- 225 R W + + N+M G +AL + +V A GG Sbjct: 335 ETRAVLDKLESEWRQVVAAVSKDKNIMARTSGVGMADKALCKEMGLVGPVARGGGVDIDA 394 Query: 226 KNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQF 285 + HP + + + V + R+ V I + + +A Sbjct: 395 RRDHPYAAYDRVDFKVITHNTADVWGRVVVRMLEVFESINIIRQCFDKMPQGPLVADITT 454 Query: 286 NKPWSEIG 293 P +G Sbjct: 455 ELPAGRVG 462 Score = 69.9 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 55/175 (31%), Gaps = 26/175 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + GR++ R E + ++ Sbjct: 381 VGPVARGGGVDIDAR-RDHPYAAYDRVDFKVITHNTADVWGRVVVRMLEVFESINIIRQC 439 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHW-AAIRDGKIDLYQC 528 FDK+ ++ T P G EAPRG H+ D + ++ Sbjct: 440 FDKMPQGPLVADITT---------ELPAGRVGYTSIEAPRGESHHFAITGDDNRPRRWRA 490 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHV 583 PT N A + + ++A + L DPC++C+ + Sbjct: 491 RAPTYQNLQGI---------PAMIKDQRIADMQISLGG------IDPCMSCTDRM 530 >UniRef50_A6DAC0 Carbon monoxide-induced hydrogenase, large subunit n=1 Tax=Caminibacter mediatlanticus TB-2 RepID=A6DAC0_9PROT Length = 358 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 47/276 (17%), Positives = 103/276 (37%), Gaps = 20/276 (7%) Query: 17 RRLVVDP-ITRIEGHMRCEVNINDQNVI-TNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 +++ + P + +E + +++++D ++ + G + RGLE + ++ ER Sbjct: 2 KKINIGPFLASLEEPIYFKLDVDDNEIVRDVEIVNGFVHRGLEALTMQKNFFQNLILTER 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHD---------HLVHFYQ 125 +C +C+ H + A+E I+V A+ +R I HLVH Y+ Sbjct: 62 LCALCSNNHPFSYCLALEKIAEIEVSKRADYLRVIADEVKRIASNMFNLSMLAHLVHDYE 121 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 L D +D + ++ LS+ Y D Q ++ + Sbjct: 122 L-MRDTMDTREIMQDVKETIWGNRMDLSAVTIGGVKYNLDKQKSEFILNSLEKIEPLVDK 180 Query: 186 YWGH-PQYKLPPEANLMGFAHYLEALDFQ-----REIVKIHAVFGGKNPHPNWIVGGMPC 239 + + + +G +AL+F I+ K P+ + + Sbjct: 181 LFERFCNSEKIKKTKGIGVLTKQQALEFGVSGPVARGSGINNDVRVKAPYAAYDE--LEV 238 Query: 240 AINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 ++++ G V + R +++ I + INN+ Sbjct: 239 RVDLESDGDVYSRMKVRWYDIKNAIKILKNAINNLP 274 Score = 98.4 bits (243), Expect = 6e-19, Method: Composition-based stats. Identities = 33/171 (19%), Positives = 54/171 (31%), Gaps = 27/171 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+AR G V + L + + G + R + Sbjct: 212 GPVAR-----GSGINNDVRVKAPYAAYDELEVRVDLESDGDVYSRMKVRWYDIKNAIKIL 266 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQCV 529 + NL +G + TEAPRG L ++ G K + Sbjct: 267 KNAINNLPSGPIHLEKRPHI------PAGEATVRTEAPRGELIYYVKTDGGQKPKRMRWR 320 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 VPT N A E + + + ++ L+S DPC++C+ Sbjct: 321 VPTYMNF---------QALEEMIKGNRASD------VVLILNSIDPCVSCT 356 >UniRef50_A0L610 Nickel-dependent hydrogenase, large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L610_MAGSM Length = 432 Score = 139 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 69/137 (50%) Query: 17 RRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + +D + R+EGH V +N++ + + +S R E++L+G+ RDA V R+C Sbjct: 2 ETITIDHLYRVEGHGGITVAVNEEGIQSCQMSIFEGARFYELLLKGKLARDAPGIVCRVC 61 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 +C+ H LASV A+E A+GI V D R ++ + H +H + LA D++ Sbjct: 62 SICSAGHTLASVMALESALGIHVSDTVQGFRTLLNLGQFIESHALHLFALAAPDYLGNAS 121 Query: 137 ALKADPRKTSELAQSLS 153 L+ ++ + L Sbjct: 122 ILQMASHFPEQVQKGLE 138 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 16/227 (7%) Query: 360 QVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIA 419 R+ G D+ + + + R+S K + VG LAR + Sbjct: 216 SGARYGLTGTHLAASGHEDIPVAHFYQRVNEKVVRHSTAKQSTYAKKPFMVGALARMVHN 275 Query: 420 YHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKN 479 + + + ++ A +TL + E WA + + L Sbjct: 276 GERLTGEAAQLREALLPAQP-------TTLHNNAAQFVELVWALEEAVALCEALQEG--- 325 Query: 480 GNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVPTTWNASP 538 A + E G+ E PRG L H + +G + + PT N + Sbjct: 326 ----PALIPPMTTMGFEGEQMGLAALEVPRGTLYHLYGVNGEGVLTQADIITPTAQNLAH 381 Query: 539 RDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 + G L + + L + ++DPC++CSTH++ Sbjct: 382 VERDFAHGVG-YWLEQPQRQQEQLRLYLEMIARAYDPCISCSTHLVD 427 >UniRef50_D2LAG1 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2LAG1_9DELT Length = 409 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 2/149 (1%) Query: 30 HMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVY 89 + ++ I ++ VI + G + RGLE + + RD VER+CG+C+ +HAL Sbjct: 18 PLHLKLTIENETVIEALPTLGYVHRGLERLCEIRDFNQMIQIVERVCGICSCLHALCYCE 77 Query: 90 AIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELA 149 +E +G++VP A +R I H HL+ A D R + Sbjct: 78 GVEQIMGVEVPRRAKYLRTIWGELHRMHSHLLWLGLFA--DAFGFESLFMQFWRVRERIM 135 Query: 150 QSLSSWPKSSPGYFFDVQNRLKKFVEGGQ 178 + + + +V +++ + Q Sbjct: 136 DIMEATCGNRVVVSVNVIGGVRRDLSPEQ 164 Score = 75.3 bits (183), Expect = 6e-12, Method: Composition-based stats. Identities = 29/215 (13%), Positives = 53/215 (24%), Gaps = 58/215 (26%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP+ R + D + + + R R E + ++ Sbjct: 212 AVGPMLRGSGWAQDARQTGYAAFDELG--FEPVVEYGGDSYARCAVRFRETLQSIDIVRL 269 Query: 469 FFDKLMTN----------------------------------------LKNGNLATASTE 488 ++ NL + Sbjct: 270 AIARMPAGETSVNVEGAMEDDTPRPVVAGERRDIMQAYNRDKHHKITAAPPPNLDLPTGL 329 Query: 489 KWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQCVVPTTWNASPRDPKGQIGA 547 + V E PRG L ++ K ++ + PT N P Sbjct: 330 VAAKVKGKPDGEAVTRVEQPRGELMYYIKGNGSKNMERVRIRTPTFANIPP--------- 380 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 A L ++A + + S DPC++C+ Sbjct: 381 LLAILPGCELAD------VPVIVLSIDPCISCTER 409 >UniRef50_B3E0W8 Coenzyme F420-reducing hydrogenase, alpha subunit n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E0W8_METI4 Length = 432 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 65/171 (38%), Gaps = 3/171 (1%) Query: 12 INNAGRRLV--VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 +N A R L + ++R+EG + + V + + R E L GR + Sbjct: 1 MNFADRPLSLSISALSRVEGEGGISIEVEKGKVKSCKLHIFEAPRFFESFLIGRHFYEPP 60 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 RICG+C + ++S AIE + +P+N +R ++ W H +H + L Sbjct: 61 DITARICGICPVAYQVSSTAAIEKGCNVLIPENLWQLRRLLYCGEWIESHSLHVFFLHAP 120 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG 180 ++ ++ +E+ L K+ + R V G Sbjct: 121 GFLRYPSLMEMAKDYPTEVGWGL-QMKKAGNALIRTLGGREIHPVNVRVGG 170 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 77/212 (36%), Gaps = 23/212 (10%) Query: 377 GDVKGSDTNIQQLNEQERYSWIKAPRWRGN---AMEVGPLARTLIAYHKGDAATVESVDR 433 G + ++E+ + A RW GN GPLAR + Y+ + + + Sbjct: 235 GQQPVPIEQFENFFKEEQTDYSNALRWLGNDSAPCVAGPLARFNLNYYLLPPFLRDILKQ 294 Query: 434 MMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPA 493 + IL R E +A + + E Sbjct: 295 T-----TLNYPCLNPFQSILVRLVEVAYAFDEAIRLIE----------TYEPEGEPCCID 339 Query: 494 TWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAAL 552 P G G +EAPRG L H + + G I + V PT +N + + A+ + Sbjct: 340 FKPCASLGQGISEAPRGILYHRYHVDEQGIITGAKIVPPTCFNLVSAEEDLK--AWIESH 397 Query: 553 MNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + + + + + ++DPC++C+TH++ Sbjct: 398 PHDSI--ENLSADCEQIVRNYDPCISCATHLI 427 >UniRef50_D1C6X3 NADH dehydrogenase I, D subunit n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C6X3_SPHTD Length = 410 Score = 138 bits (347), Expect = 6e-31, Method: Composition-based stats. Identities = 45/278 (16%), Positives = 87/278 (31%), Gaps = 19/278 (6%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R + + + + G + RG+E I + + + +R V Sbjct: 34 HPST--HGVLRVRLTLEGETITACDPVIGYLHRGVEKIGESKRYAQFTPWTDRTDYVAAP 91 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 + L V A+E +GI+ P+ A R IM HLV +D I L Sbjct: 92 SNNLGYVLAVEKLLGIEAPERAQYWRMIMGELARIASHLVWLGT-HALD-IGALSMSLYC 149 Query: 142 PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLM 201 R+ + + + + + G + R+ PQ + E L Sbjct: 150 FRERELILDIFEKFCGARLTTNMMEIGGFSRPIPAGLPEMIRDFLKVFPQRQREYEDLLS 209 Query: 202 GFAHYLEALDFQREIVKIHAVFGG---------------KNPHPNWIVGGMPCAINIDES 246 +L I A+ G + P + + + + Sbjct: 210 ANPIWLARTRGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAQPYLLYDRIDFEVPLGTQ 269 Query: 247 GAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQ 284 G V + R+ ++ + ++ V L + + Sbjct: 270 GDVYDRYLVRMEEMRQSLKIIEQCLDQVPTDGPLKLAE 307 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 26/168 (15%), Positives = 45/168 (26%), Gaps = 24/168 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 G R + + +PL R L R E + + ++ Sbjct: 235 TGACLRGSGVNYDVRK-AQPYLLYDRIDFEVPLGTQGDVYDRYLVRMEEMRQSLKIIEQC 293 Query: 470 FDKLMTNLK------------------NGNLATASTEKWEPATWPTECRGVGFTEAPRGA 511 D++ T+ P + E +G Sbjct: 294 LDQVPTDGPLKLAESNYVIPPHETVLTTAEDMQRHFIWVIKGFSPPKGEVYMSIEHSKGE 353 Query: 512 LGHWAAIRDGKIDLY--QCVVPTTWNAS--PRDPKGQIGAYEAALMNT 555 LG++ + DG Y + P N P +G + A AL+ T Sbjct: 354 LGYYI-VSDGSPVPYRLRIRTPDFVNLQSLPYLAEGAMLADVVALIGT 400 >UniRef50_P19496 Coenzyme F420 hydrogenase subunit alpha n=2 Tax=Methanobacteriaceae RepID=FRHA_METTH Length = 405 Score = 138 bits (347), Expect = 7e-31, Method: Composition-based stats. Identities = 88/582 (15%), Positives = 162/582 (27%), Gaps = 186/582 (31%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 R+V+ P +R EGH + ++D+ ++T +GR Sbjct: 2 SERIVISPTSRQEGHAELVMEVDDEGIVT----------------KGRYF---------- 35 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 ++ V +E + K P+ A +I + Sbjct: 36 --------SITPVRGLEKIVTGKAPETAPVI------VQRIC----------------GV 65 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLP 195 + + SL + ++ V + F P+ + Sbjct: 66 CPIPHTLASVEAIDDSLDIEVPKAGRLLREL-TLAAHHVNSHAIHHFLIAPDFVPENLMA 124 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWI-VGGMPCAINIDESGAVGAVNM 254 N + + ++ + + G+ HP+ + +GGM I + A Sbjct: 125 DAINSVS--------EIRKNAQYVVDMVAGEGIHPSDVRIGGMADNITELARKRLYARLK 176 Query: 255 ERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + V + I + +P G G+ ++ L+ Sbjct: 177 QLKPKVDEHVELMIGLIEDKGLP--------------KGLGVHNQPTLA----------- 211 Query: 315 GEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWY 374 D + E + +WY P Sbjct: 212 ---------------SHQIYGDRTKFDLDRFTEVMPESWYDDPE---------------- 240 Query: 375 NPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRM 434 + + P + G +EVGP AR + Sbjct: 241 -----------------IAKRACSTIPLYDGRNVEVGPRARMV----------------- 266 Query: 435 MSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPAT 494 + + + + RA E + A + D+L T S Sbjct: 267 ----EFQGFKERGVVAQHVARALEMKTALARAIEILDELDT----------SAPVRADFD 312 Query: 495 WPTECR-GVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALM 553 + GVG E PRG H A + +GKI Y +VPTTWN P + +E Sbjct: 313 ERGTGKLGVGAIEGPRGLDVHMAQVENGKIQFYSALVPTTWNIPTMGPATEGFHHEYG-- 370 Query: 554 NTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGSELISVQ 595 + ++DPCL+C+THV+ D + ++ Sbjct: 371 -------------PHVIRAYDPCLSCATHVMVVDDEDRSVIR 399 >UniRef50_A5GBN1 Ech hydrogenase subunit E n=20 Tax=cellular organisms RepID=A5GBN1_GEOUR Length = 359 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 48/268 (17%), Positives = 85/268 (31%), Gaps = 17/268 (6%) Query: 19 LVVDPITRIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + + P I + ++ D+ VI S + RGLE +++ RD D +RICG Sbjct: 7 IPIGPQHPILPEPIHFDLVTEDEKVIDAIPSISYVHRGLERLVEKRDFIDFAHVADRICG 66 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ +H+L A+E+ + I+VP A +R+I H H+ A D Sbjct: 67 LCSFMHSLGYCQAVEEIMSIEVPQRALYLRSIWAELSRIHSHIFWLG--AAADAFGFESL 124 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG---YWGHPQYKL 194 R + +++ ++G L N G + Sbjct: 125 FMQAMRLREPVLDIFEETTGGRVILGVCKVGGVRRDIDGDSLKGIVNRLTTLKGALEELS 184 Query: 195 PPEANLMGFAHYLEALDFQRE-------IVKIHAVFGGKNPH----PNWIVGGMPCAINI 243 N H L + F V A G + + Sbjct: 185 NVFLNDYSVQHRLAGVGFLSREDAYTLGCVGPMARASGLAIDMRALGYAAYKYLEVEPVV 244 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFI 271 + +G A R+ + I + Sbjct: 245 ESAGDCHARCRVRIREIFHAIDLIRQAV 272 Score = 76.1 bits (185), Expect = 3e-12, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 29/174 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR A + L + + + G R Sbjct: 214 VGPMARASGLAIDMRALG------YAAYKYLEVEPVVESAGDCHARCRVRIREIFHAIDL 267 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQC 528 + + + G + T + E PRG + H+ + + ++ Sbjct: 268 IRQAVGKIPAGPVDV-------KVTGTPDGEYYSRVEQPRGEVIHYVKGNGARFLQRFRV 320 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 VPT N K+ Q ++ + + DPC++C+ Sbjct: 321 RVPTFSNIPAM---------------VKVLKGSQLADVPNIILTLDPCISCTER 359 >UniRef50_C0Z770 NADH-quinone oxidoreductase chain D n=2 Tax=Bacillales RepID=C0Z770_BREBN Length = 382 Score = 138 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 39/294 (13%), Positives = 84/294 (28%), Gaps = 29/294 (9%) Query: 6 ETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 T+ +N + P T G R V I+ + + G + RG E + + Sbjct: 19 RTEEMLLNVGPQ----HPST--HGVFRLVVKIDGETIKEAIPVMGYLHRGTEKLAENLTY 72 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 + +R+ V + +A+E +G+++P+ A +R I + HLV + Sbjct: 73 TQIIPYTDRMDYVSAMTNNYVLCHAVETMMGLEIPERAQFLRLIAMELNRVASHLVWWGT 132 Query: 126 LAGMDWIDVLDALKADPR------------------KTSELAQSLSSWPKSSPGYFFDVQ 167 +D + L A + P + Sbjct: 133 F-LLDIGAMGPFLYAFRDRETILDLFNELCGARMTFNYMRVGGVKWDAPPGWVDKAKEFV 191 Query: 168 NRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKN 227 +KK + + N + + + + L + + VK + + Sbjct: 192 QYMKKELNNYHQLVTGNEIFINRLIGIGKFDTKTALDYSLSGVMLRSTGVK----WDLRK 247 Query: 228 PHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 P I + G A R+ ++ + + + Sbjct: 248 DEPYCIYDRFEFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGEVM 301 Score = 43.0 bits (99), Expect = 0.030, Method: Composition-based stats. Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 423 GDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNL 482 G + + +T G + R H + ++ + + Sbjct: 240 GVKWDLRKDEPYCIYDRFEFDVPTATEGDCMARYHLRMAEIEQSLRILEQALEQFPSEGE 299 Query: 483 ATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQC--VVPTTWNA 536 + P E+PRG +G + A GK ++ P+ N Sbjct: 300 VMGKVPRV---IRPPAGETYVRIESPRGEIGCYIA-SQGKDKPWRLKFRRPSFTNL 351 >UniRef50_C8W240 Hydrogenase, large subunit-like protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W240_DESAS Length = 525 Score = 137 bits (345), Expect = 9e-31, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 93/292 (31%), Gaps = 20/292 (6%) Query: 14 NAGRRLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 ++ V P+ IE GH R ++VI RG+E +G+ DA Sbjct: 168 EGLYQVPVGPVHAGIIEPGHFRFFTF--GEDVINLQAQLFYTHRGIEKTAEGKHFLDAVL 225 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL-AGM 129 ER+CGVC+ HA++ AIE GI P A IR ++L ++H+ + AG+ Sbjct: 226 VAERVCGVCSASHAVSYAQAIESLAGINAPLRARYIRTVLLEMERLYNHVGDIGNMCAGI 285 Query: 130 DWIDVLDALKADPRKTSELAQSLSSW--------PKSSPGYFFDVQNRLKKFVEGGQLGI 181 + + + + L+ P D + + + Sbjct: 286 GFSFGISRGAELKERLMRMNMKLAGHRYLRGTVVPGGVKIDLKDTEGIGRALDTVKRELK 345 Query: 182 FRNGYWGHPQYKLPPEANLMGFA----HYLEALDFQREIVKIHAVFGGKNPHPNWIVGGM 237 Q L L A ++ + P + Sbjct: 346 ELTDTMLSSQSLLDRMQTTGVLPTDAARDLGATGPAARASGVNRDL--RREFPYAAYRRV 403 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPW 289 + I G V ++R+ + NN+ + A + +P+ Sbjct: 404 SFQVPIQHEGDVYCRLIQRIEESEQSFDIIRQVFNNLPAGELQAPITYLQPY 455 Score = 60.3 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 45/172 (26%), Gaps = 27/172 (15%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP AR + + G + CR + + + Sbjct: 377 ATGPAARASGVNRDLRREF-----PYAAYRRVSFQVPIQHEGDVYCRLIQRIEESEQSFD 431 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA-IRDGKIDLYQ 527 ++ NL G L +P VG+TE+ RGA HW D + Y Sbjct: 432 IIRQVFNNLPAGELQAP-ITYLQPYH-----TAVGYTESARGANVHWVMSGPDNTVYRYM 485 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 + N L + SF+ C AC Sbjct: 486 VRSASHCNWP---------VVPLCLPGNIVPD------FPLINKSFELCYAC 522 >UniRef50_Q2K3U2 NADH-quinone oxidoreductase subunit D 2 n=7 Tax=Proteobacteria RepID=NUOD2_RHIEC Length = 404 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 54/356 (15%), Positives = 107/356 (30%), Gaps = 24/356 (6%) Query: 1 MSTQYETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 ++ +G +N L + P G +R + ++ + V G + RG E + Sbjct: 4 VTELSRPEGEALNTREVLLNLGPQHPSTHGVLRLVLELDGEFVERVDPHIGYLHRGTEKL 63 Query: 60 LQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 + + +R+ +C + LA A+E +GI+ P A IR +M H Sbjct: 64 AESFTYTQIFPLTDRLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGH 123 Query: 120 LVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL 179 L+ L + + AL R+ + L + F +++ + G Sbjct: 124 LLITGAL--PMDLGAMTALLYVMREREMIMDLLEMITGARMHTSFCRVGGVREDLPDGFF 181 Query: 180 -------GIFRNGYWGHPQYKLPPEA-----NLMGFAHYLEALDFQREIVKI---HAVFG 224 IF N + + +G +A+D + + Sbjct: 182 PKIREFCDIFPNRIRDYERLLEDNRVFLNRTKGIGVISAEDAVDLGLSGPNLRASGVDWD 241 Query: 225 GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQ 284 + P I + + + G A R++ ++ + I+ + G Sbjct: 242 IRRDEPYEIYDRLDFNVITRDEGDCYARWRCRVDEMRESMRIIEQCIDQMPE------GP 295 Query: 285 FNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLV 340 F I L V D +P G V + + Sbjct: 296 FQIDMPTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGELGFY 351 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/185 (14%), Positives = 49/185 (26%), Gaps = 37/185 (20%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP R + + + R CR E + + ++ Sbjct: 230 GPNLRASGVDWDIRRDEPYEIYDRLDFNVITRDEGD-CYARWRCRVDEMRESMRIIEQCI 288 Query: 471 DKLMTNLKNGNLATASTEKWEP------------------ATWPTECRGVGFTEAPRGAL 512 D++ ++ T + + + EAP+G L Sbjct: 289 DQMPEGPFQIDMPTIAFPLDKDRVHCSMEALIQHFDLSAYGFKVPKGEVYSAIEAPKGEL 348 Query: 513 GHWAAIRDG--KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTL 570 G + I DG K + P+ N AL + +++ L Sbjct: 349 G-FYIISDGSPKPFRMKVRAPSFVNL-------------QALFG--VTNARYLADMIAVL 392 Query: 571 HSFDP 575 S DP Sbjct: 393 GSLDP 397 >UniRef50_A4XCQ7 NADH-quinone oxidoreductase subunit D 2 n=22 Tax=Actinomycetales RepID=NUOD2_SALTO Length = 388 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 4/195 (2%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 L + P G +R + ++ + V++ G M RG E + + RD R R Sbjct: 30 LNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANRHDW 89 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 + + L V A+E +G++VP+ A +R + +HL+ + I + Sbjct: 90 LSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLG--SYPLEIGAITP 147 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + R+ L +L Y F+ LK+ V G G R G + LP Sbjct: 148 MFYAFRERETLQTALEEVSGGRIHYMFNRVGGLKEEVPAGWTGRARAA-IGEVRRSLPDL 206 Query: 198 ANLMGFAHYLEALDF 212 NL+ A Sbjct: 207 DNLIRRNEIFLARTV 221 >UniRef50_C5A2R8 Coenzyme F420 hydrogenase subunit alpha (FrhA) n=1 Tax=Thermococcus gammatolerans EJ3 RepID=C5A2R8_THEGJ Length = 393 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 64/398 (16%), Positives = 114/398 (28%), Gaps = 59/398 (14%) Query: 188 GHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 +P + + + G H + I V +N G + Sbjct: 51 KNPLFAVEAVMRICGLCHASHGIAASEAIEHAIGVTPPRN--------GRLMREALGLIN 102 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 + + L + +I N+V+ + + ++G + L+ G Sbjct: 103 RAQSHALLFLMVAGDLIKEEKR--NDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGGM 160 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 + + + L + + + L+D E D + F Sbjct: 161 LSVP-KWSVFNNLKARFKDLTASWEAAEEL-LIDEDIQTEIADELREAKRPFKYLASGFF 218 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 V + E R S + G +E GP AR + Sbjct: 219 YGDRYNIEWDKVSSVPYYEFRKEEAARESTTLVSFYDGEKVETGPRARMI--------TY 270 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 E D S G L R + + A +L D++ Sbjct: 271 REFRDE-------------SLYGLHLARIEDTRLAIQRLGEILDEIR----------IEE 307 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCVVPTTWNASPRDPKGQIG 546 +GVG EAPRG L H+ + +G++ + VVPT +N Sbjct: 308 PFRTGDITFRPGKGVGVYEAPRGTLIHYVELGEEGRVLKSRIVVPTMFNIP--------- 358 Query: 547 AYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 E + E + +DPC+ C+THV+ Sbjct: 359 VMEEMAKGLSVKAAEA------VMRLYDPCIPCTTHVV 390 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 73/200 (36%), Gaps = 11/200 (5%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDAWAFVERICG 77 + +D + RI G + + + V+ +A+ T RG E ++ G++P A V RICG Sbjct: 7 ITLDKVCRIAGEAKLILY-EEDGVVQDALFIATAPVRGFEKMVVGKNPLFAVEAVMRICG 65 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C H +A+ AIE AIG+ P N ++R + H + + + D I Sbjct: 66 LCHASHGIAASEAIEHAIGVTPPRNGRLMREALGLINRAQSHAL-LFLMVAGDLIK---- 120 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 K +++ L + Y + G+ W Sbjct: 121 ----EEKRNDVLFKLMDFHAKISDYLLKLGGAATHPPNLTIGGMLSVPKWSVFNNLKARF 176 Query: 198 ANLMGFAHYLEALDFQREIV 217 +L E L +I Sbjct: 177 KDLTASWEAAEELLIDEDIQ 196 >UniRef50_C5CEV3 NADH-ubiquinone oxidoreductase chain 49kDa n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV3_KOSOT Length = 402 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 44/272 (16%), Positives = 88/272 (32%), Gaps = 18/272 (6%) Query: 19 LVVDPITRIEGHMR-CEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 L V P + ++ ++ + V+ + G M RG+E I + + VERICG Sbjct: 7 LPVGPFHPLLEEAEYFKIKLDGERVVDIEMETGWMHRGIEKISEESTFDQSIFVVERICG 66 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 +C+ H A + A ED I+VP A IR+++ H HL+ +I Sbjct: 67 ICSASHPFACINAFEDIGEIEVPLKARYIRSLIGELERVHSHLLWLGLAGH--FIGYDTL 124 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKF------------VEGGQLGIFRNG 185 + + + + + Y +++ ++ + + Sbjct: 125 WMWAWKYREPVLEVIEMITGNRNHYGTFKIGGVRRDYDVSLNSVVHEKLDFLEKKLTMVA 184 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQRE---IVKIHAVFGGKNPHPNWIVGGMPCAIN 242 + +G EA+ + + P + + Sbjct: 185 KAVANDPVVRSRLCGVGVLTKEEAISYCAVGPTARASGVAIDVRKDEPYAAYDLLDFGVV 244 Query: 243 IDESGAVGAVNMERLNLVQSIITRTADFINNV 274 + E G + A + R+ V I I + Sbjct: 245 VREEGDIFAKTVVRILEVFESIKMIRQIIEKL 276 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/189 (15%), Positives = 58/189 (30%), Gaps = 26/189 (13%) Query: 407 AMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKL 466 VGP AR + ++ + + + R E + + Sbjct: 211 YCAVGPTARASGVAIDVRKDEPYAAYDLLDFGVVVREEGD-IFAKTVVRILEVFESIKMI 269 Query: 467 QYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDL 525 + +KL + G+G EAPRG + H+ + Sbjct: 270 RQIIEKLRK---------VKGPIYNDVKEIPAGEGIGRHEAPRGEVFHYIRTDGSNRPVR 320 Query: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLG 585 ++ P+ N Y+A+ + E ++L TL S DPC C+ + Sbjct: 321 HKIRAPSYVNIP---------TYKASCIG------ENLADVLITLASVDPCYCCTERSVR 365 Query: 586 DDGSELISV 594 + + + Sbjct: 366 LQTEKGMEI 374 >UniRef50_Q1PZL4 Similar to membrane-bound [NiFe]-hydrogenase-3, large subunit (Chain E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZL4_9BACT Length = 531 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 55/315 (17%), Positives = 87/315 (27%), Gaps = 32/315 (10%) Query: 19 LVVDPITR--IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V PI IE GH R ++ +G E I + A ERI Sbjct: 176 IPVGPIHAGVIEPGHFRFSAV--GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERI 233 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL-AGMDWIDV 134 CGVC HA AIE I++P A IR I++ ++H+ + AG ++ Sbjct: 234 CGVCAASHATGYCQAIEKVAEIEIPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLG 293 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG------ 188 + +L ++++ + N Sbjct: 294 IAHGFRIREYLQQLNETITGNRYLRGMLAIGGVRFDINDDLEKHILSLLNHVKKDFKDLT 353 Query: 189 ----HPQYKLPPEANLMGFAHYLE----ALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 L + + + I + HP + Sbjct: 354 KMMFKSSSLLDRLETTGRLSEEIARGLGVVGVAARASGIVQDT--RVNHPYAAYEEVDFD 411 Query: 241 INI-DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDK 299 I + G V A R++ V I M P L P + Sbjct: 412 IPVFHYEGDVLARIRVRVDEVYQSIYIIEQCFE-KMRPGPLKTPIKELPPYKQ------- 463 Query: 300 CVLSYGAFPDIANDF 314 LSY P N + Sbjct: 464 -ALSYVESPRGENIY 477 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 49/172 (28%), Gaps = 26/172 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VG AR + + L RI R E + ++ Sbjct: 383 VGVAARASGIVQDTRVNHPYAAYEEVDFDIPVFHYEGDVLARIRVRVDEVYQSIYIIEQC 442 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQC 528 F+K+ K P + + + E+PRG +W G K+ Y+ Sbjct: 443 FEKMR----------PGPLKTPIKELPPYKQALSYVESPRGENIYWIMTAPGNKLFRYKV 492 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS 580 P+ N P P G + SF+ C +C+ Sbjct: 493 RSPSFCN-WPAIPFAVPG--------------NIVPDFPLINKSFELCYSCT 529 >UniRef50_C1TPP0 Ni,Fe-hydrogenase III large subunit n=2 Tax=Synergistaceae RepID=C1TPP0_9BACT Length = 413 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 53/332 (15%), Positives = 105/332 (31%), Gaps = 28/332 (8%) Query: 14 NAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 +L + P+ ++ + ++I +++ + G + RG+E + + R+P Sbjct: 4 TKTYKLPIGPVHVGLKEPITAWLDIEGEHIKDAVIRPGAIHRGVEFMARERNPIQVIYLA 63 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ER+CG+C+ HA+A V A+EDA I+VP A IR+++L H H++ I Sbjct: 64 ERVCGICSFSHAIAFVKAVEDAAQIEVPIRAQYIRSMVLELERIHSHILWSGVACY--TI 121 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG---YWGH 189 A ++ L + + Y ++ V + + Y Sbjct: 122 GFDSAFHLGMMLREKVMDVLEALSGNRVNYAVTTVGGVRWDVTPAVVRTVMDMIHYYRNE 181 Query: 190 PQYKLPPEANLMGFAHYLE--ALDFQREIVKIHAV----------FGGKNPHPNWIVGGM 237 N L + + +K A+ + P + Sbjct: 182 FASFYEAAINDPVVKARLRDVGVLTTEQAIKYCALGPTSRGSGVRADVRWSAPYDAYCDI 241 Query: 238 PCAI------NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE 291 + G V + R+ V + + + F ++ Sbjct: 242 HVEPVVPQDYTGEVHGDVYDRFLVRVYEVLQSLDILEKIMEGLPEGSI----TFEPKVNK 297 Query: 292 IGTGLSDKCVLSYGAFPDIANDFGEKSLLMPG 323 + T L + YG D L Sbjct: 298 LLTVLKKAEGVGYGCIEAPRGDDTHAVGLKAQ 329 Score = 95.7 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 31/198 (15%) Query: 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST-------LGRILCRAHE 458 +GP +R + + D D P+ T R L R +E Sbjct: 212 KYCALGPTSRG--SGVRADVRWSAPYDAYCDIHVEPVVPQDYTGEVHGDVYDRFLVRVYE 269 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLA-TASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 + +K+M L G++ K E G G EAPRG H Sbjct: 270 VLQSLD----ILEKIMEGLPEGSITFEPKVNKLLTVLKKAEGVGYGCIEAPRGDDTHAVG 325 Query: 518 IR--DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDP 575 ++ + ++ PT N A+ M + + ++S DP Sbjct: 326 LKAQQENVQWWKVRAPTYSN---------------AVSWPLMFKDNELADAPLIINSIDP 370 Query: 576 CLACSTHVLGDDGSELIS 593 C++C ++ D S Sbjct: 371 CISCMERMVLSDTSSGTK 388 >UniRef50_B9M7G0 Nickel-dependent hydrogenase large subunit n=5 Tax=Geobacter RepID=B9M7G0_GEOSF Length = 425 Score = 135 bits (340), Expect = 3e-30, Method: Composition-based stats. Identities = 58/315 (18%), Positives = 97/315 (30%), Gaps = 27/315 (8%) Query: 277 PDALAIGQFNKPWSE-----IGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDF 331 PD L +G K IG L + G L ++++ Sbjct: 131 PDLLKLGLRIKAVGNDIQETIGGRLIHPINVKIGGMGQHIASNDLLRLQQSLKSILS--- 187 Query: 332 NNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNE 391 + + V+L P G VKGSD Sbjct: 188 DTIRTVELFSSFATPGPPLPPPVYLAVKDENAPPLFGDMLTTSTGIAVKGSDYRSALKES 247 Query: 392 QERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGR 451 +S K + + VG L+R + + A ++ D+ L Sbjct: 248 VNDHSNGKFSHFDDTNIAVGALSRLNMN-IRLTEAAGKAFDQAKKKL-----VNGDMWQN 301 Query: 452 ILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGA 511 L +A E +A D L L+ G+ +A+ P + G TEAPRG Sbjct: 302 NLAQAIELVFAVESAMEIIDSL---LQTGHGHSATDGILSP-----KGEGTAITEAPRGV 353 Query: 512 LGHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTL 570 L H + G + PT N + + A E ++ + Sbjct: 354 LIHSYSFNSRGYCVGADIITPTAINQAAIEQDLLF--LARATEGAG--EQEMKFKLEMLV 409 Query: 571 HSFDPCLACSTHVLG 585 ++DPC++C+ H++ Sbjct: 410 RAYDPCISCAVHLIS 424 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 1/166 (0%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + + P+TR+EGH V ++ +V ++ R E++L+G+ R+ + RI Sbjct: 2 SNIIEIKPLTRVEGHGVVRVFMDGSHVDRVELALVEPPRLFEVLLRGKHFREIPDIICRI 61 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 C +C+ +H + ++ A+E A GI V + R +++ H +H + LA D + Sbjct: 62 CSLCSTIHRVTALMAVEKAFGIIVSSETYLYRQLIVLGGHIQSHALHLFCLALPDHFN-A 120 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGI 181 + +L + + RL + G+ Sbjct: 121 AGFADLAKLAPDLLKLGLRIKAVGNDIQETIGGRLIHPINVKIGGM 166 >UniRef50_C6YT64 Predicted protein n=2 Tax=Francisella philomiragia RepID=C6YT64_9GAMM Length = 431 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 49/303 (16%), Positives = 103/303 (33%), Gaps = 14/303 (4%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + V + R+EG ++ I D + + R E L+GR+P V RICG+ Sbjct: 7 IEVPILARVEGEGALDLRIKDGKIDKCELRIYEPPRYFEKFLEGREPNAIIDAVARICGI 66 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 C + A + A I + +R +M W H +H + LA D++ A+ Sbjct: 67 CPLAYQAGFSRAYDSAFDITRTQWIDDMRLLMFLGEWIESHYLHVHLLAAPDFLGYRSAI 126 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEA 198 + E+ + + + + G ++G F + L P+ Sbjct: 127 EMAKDYPKEVVRGVK--LQHLGNDILKLLGGRSVHPNGMKVGGFYKAPLVKEVHALIPKL 184 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLN 258 +AL +++V+ + P+ + +++ V ++ + Sbjct: 185 K--------DALKEAKDVVEWVSTLS----FPDTTIPFKMVSLSHPTEYPVFGDDVITSD 232 Query: 259 LVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKS 318 + I+ D P + A+ I G + L++ P + + Sbjct: 233 GEKFHISEYDDHFREFHAPQSTALHSTTVDGQPILLGPLPRINLNFDKLPKHIQEMAHAT 292 Query: 319 LLM 321 + Sbjct: 293 GVK 295 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 62/413 (15%), Positives = 108/413 (26%), Gaps = 41/413 (9%) Query: 197 EANLMGFAHYLEALDFQREIVKIHAVFGGKN-PHPNWIVGGMPCAINIDESGAVGAVNME 255 E + Y E RE I P G A + + Sbjct: 34 ELRIYEPPRYFEKFLEGREPNAIIDAVARICGICPLAYQAGFSRAYDSAFDITRTQWIDD 93 Query: 256 R--LNLVQSIITRTADFINNVMIPDAL---AIGQFNKPWSEIGTG------LSDKCVLSY 304 L + I ++ + PD L + + K + + L + + Sbjct: 94 MRLLMFLGEWIESHYLHVHLLAAPDFLGYRSAIEMAKDYPKEVVRGVKLQHLGNDILKLL 153 Query: 305 GAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHA--------WYRY 356 G N L L + + V E+V + Sbjct: 154 GGRSVHPNGMKVGGFYKAPLVKEVHALIPKLKDALKEAKDVVEWVSTLSFPDTTIPFKMV 213 Query: 357 PNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPR-WRGNAMEVGPLAR 415 +P G + S+ + S G + +GPL R Sbjct: 214 SLSHPTEYPVFGDDVITSDGEKFHISEYDDHFREFHAPQSTALHSTTVDGQPILLGPLPR 273 Query: 416 TLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMT 475 + + K E ++ ++ RA E WA + ++ Sbjct: 274 INLNFDKLPKHIQEMAHATGVKW-----PSKNMFHSVVARAIEGYWAIERAL----QVCE 324 Query: 476 NLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTW 534 N + G EAPRG + D G + + PT+ Sbjct: 325 NYSYTDTPCVDYTV-------KAADAWGAVEAPRGIQIDHIKVNDQGLAEKIRISAPTSQ 377 Query: 535 NASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 N + +I A E + L + ++DPC++CS H L + Sbjct: 378 NLPCIEADLRI-ALEN--FGLDKPEDDIRLHAEMVIRNYDPCISCSAHFLTLN 427 >UniRef50_C9LCY9 NADH dehydrogenase I, C/D subunit n=9 Tax=Bacteroidales RepID=C9LCY9_9BACT Length = 558 Score = 135 bits (340), Expect = 4e-30, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 89/303 (29%), Gaps = 32/303 (10%) Query: 1 MSTQYETQGYTINNAGRRL--------VVDPIT-RIEGHMRCEVNINDQNVITNAVSCGT 51 ++TQY+ +I + + P G + V + + + G Sbjct: 176 VTTQYDRPDGSITTKENTIFTEDDYVVNIGPQHPSTHGVLHFRVALEGERIRKIDPILGY 235 Query: 52 MFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIML 111 + RG+E + + A ER+ + + A IE A GI+V + IR IM Sbjct: 236 IHRGIEKLNESLTYPQTLALTERLDYLGAMQNRHALCMCIEKAAGIEVSERVQYIRTIMD 295 Query: 112 ATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPK--------SSPGYF 163 H++ F L + A R ++ + G Sbjct: 296 EFQRIDSHILFFSCLCQD--MGATSAFLYGFRDREQILDIFEETCGGRLILNYNTIGGVM 353 Query: 164 FD----VQNRLKKFVEGGQ------LGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQ 213 D R+K+F+ + IF N H + + N + Sbjct: 354 ADIHPNFVRRVKEFIPYMRHNLQEYYDIFVNNVIAHNRLEGVGVLNKEQVISFGCTGGTG 413 Query: 214 REIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 R + + + P + G A M R+ ++ + I+ Sbjct: 414 RAAGWSNDL---RKHQPYAAYDKVDFQEITYTEGDSFARLMVRMKEIEESLKIIEQLIDG 470 Query: 274 VMI 276 + Sbjct: 471 IPE 473 Score = 42.6 bits (98), Expect = 0.043, Method: Composition-based stats. Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 9/102 (8%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 G R + + + + + S R++ R E + Sbjct: 409 TGGTGRAAGWSNDLRKHQPYAAYDKVDFQEITYTEGDS-FARLMVRMKEI----EESLKI 463 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGA 511 ++L+ + G K +P E RG Sbjct: 464 IEQLIDGIPEG----PFQTKTKPIIKIPAGTYYSAVEGSRGE 501 >UniRef50_D2MJM9 NADH-ubiquinone oxidoreductase, chain 49kDa n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MJM9_9BACT Length = 583 Score = 135 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/294 (14%), Positives = 88/294 (29%), Gaps = 23/294 (7%) Query: 3 TQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQG 62 + T +N + P T G +R + ++ + V G + RG+E + +G Sbjct: 193 SAKRTTELLLNMGPQ----HPST--HGVLRVVLELDGERVAKAVPDMGYLHRGVEKLAEG 246 Query: 63 RDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVH 122 +R+ VC + A V A+E +G+ +P+ A +R I+ HL Sbjct: 247 LHYMQVIPHTDRLDYVCAMTNNYAYVRAVEKLVGVTIPERAEYVRTIVAEVQRIVGHLFW 306 Query: 123 FYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPG---YFFDVQNRLKKFVEGGQL 179 A I + R+ L + Y + +L Sbjct: 307 LGTQALD--IGAMTVFFWTFREREVLLDFFEQLCGARLTLNYYRIGGVDGDLTPALIERL 364 Query: 180 GIFRNGYWGHPQ-YKLPPEANLMGFAHYLEALDFQRE-----------IVKIHAVFGGKN 227 F + H Q Y + N + A E + + + Sbjct: 365 RGFLKTFPEHVQEYDTLLQRNRIWVARTKNVAVISAEDAINFGLTGPTLRGSGVAYDVRK 424 Query: 228 PHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 P + + + + + G R+ ++ ++ + +A Sbjct: 425 LEPYGVYDRVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQCLDQLPEGPIMA 478 Score = 46.8 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 21/154 (13%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R + V ++P+ T R R E + +A ++ Sbjct: 409 TGPTLRGSGVAYDVRKLEPYGVYD-RVEWDVPVGKGGDTYDRYWIRVEEMKQSARIIEQC 467 Query: 470 FDKLMTNLKNGNLATASTEKWE-----------------PATWPTECRGVGFTEAPRGAL 512 D+L ++ P + TE P+G L Sbjct: 468 LDQLPEGPIMADMPQVIPPAKPNVMRDMESLIHHFIIFTQGFKPPKGETYCGTEVPKGEL 527 Query: 513 GHWAAIRDGKIDLYQ--CVVPTTWNASPRDPKGQ 544 G + I DG Y+ P+ + D + Sbjct: 528 G-FFLISDGSPRPYRMKIRSPSFVHMGAFDFMAR 560 >UniRef50_C9LVK3 Proton-translocating NADH-quinone oxidoreductase, D subunit n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LVK3_9FIRM Length = 365 Score = 135 bits (338), Expect = 7e-30, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 25/288 (8%) Query: 5 YETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRD 64 E Y +N + P T G ++ E+ ++ + + G + RG+E +++ R Sbjct: 2 AEKSTYILNMGPQ----HPST--HGVLQVELELSGERIERAKPILGYLHRGIEKLMESRT 55 Query: 65 PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY 124 + +++ V + + LA A+E GI+VP A +R I HLV Sbjct: 56 YAQCLPYTDKLDYVSSMNNNLAWCTAVEKLAGIRVPLRAEYLRVIAAELNRIASHLVFIG 115 Query: 125 QLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 L ++ + A R ++ + + + F + Sbjct: 116 TL--LNDLGAATAFVYAFRDREKVLDLFDLICGARMSTSYIRLGGVA-FDATEEFIEKTQ 172 Query: 185 GYWGHPQYKLPPEANLMGFAHYLEALD-----FQREIVKIHAVFGG-----------KNP 228 + + L NL+ A E K ++ G + Sbjct: 173 AFLDYVPEMLEEYDNLITGNEIFYARMKGVSPMTAEEAKALSLSGANLRATGVAYDIRRV 232 Query: 229 HPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI 276 P + + + + G RL + + + Sbjct: 233 EPYSVYDRLDFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPE 280 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 35/125 (28%), Gaps = 9/125 (7%) Query: 437 ALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWP 496 +P+ + R R E +A ++ ++ + + P P Sbjct: 242 DFEVPVGTLGDDWDRYEVRLKEIGESAKIIRQALKEMPEG--------SCRKVVSPNLRP 293 Query: 497 TECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 + E RG LG + K P+ N DP + +++ Sbjct: 294 PKGSVYHRVENTRGELGFYIVSDGTAKPYRVHIRRPSFVNLQALDPLCRGTLVADSVVVY 353 Query: 556 KMAIP 560 P Sbjct: 354 STLDP 358 >UniRef50_B9L172 NADH dehydrogenase I, D subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L172_THERP Length = 409 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 38/275 (13%), Positives = 78/275 (28%), Gaps = 19/275 (6%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R + + + VI G + RG+E + + + +R V Sbjct: 33 HPST--HGVLRVRLTLEGETVIACDPVIGYLHRGVEKLGESHRYAQFVPWTDRTDYVAAP 90 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 + L V A+E GI+ P+ A R IM HLV +D I L Sbjct: 91 SNNLGYVLAVEKLCGIQAPERAQYWRMIMAELTRIASHLVWLGT-HALD-IGALSVSLYT 148 Query: 142 PRKTSELAQSLSSWPKSS-PGYFFDVQNRLKK-FVEGGQLGIFRNGYWGHPQYKLPPEAN 199 R + + + ++ ++ + ++ Y+ + Sbjct: 149 FRDRELILDIFEKFCGARLTTNMMEIGGFSREIPPDLPEMVREFCRYFPKAIRQYEDLLT 208 Query: 200 LMGFAHYL--------EALDFQREIVKIHAVFGG-----KNPHPNWIVGGMPCAINIDES 246 + + G + P + + + + Sbjct: 209 ENPIWLARTKGVGVIEPDVAINYGLTGACLRGSGVNYDVRKAMPYLLYDRVEFEVPLGTH 268 Query: 247 GAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 G V + R+ ++ + + V L Sbjct: 269 GDVYDRYLVRIEEMRQALRIIEQCLEQVPTDGPLM 303 Score = 46.1 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 44/167 (26%), Gaps = 22/167 (13%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 G R + A + +PL R L R E + A ++ Sbjct: 234 TGACLRGSGVNYDVRKAMPYLLYD-RVEFEVPLGTHGDVYDRYLVRIEEMRQALRIIEQC 292 Query: 470 FDKLMTNLKNGNLATASTEKWEPATW------------------PTECRGVGFTEAPRGA 511 +++ T+ + P + E +G Sbjct: 293 LEQVPTDGPLMAYESPYVIPPHKTVMTTAEDMQRHFIWVIKGFSPPKGEVYHAVEHSKGE 352 Query: 512 LGHWAAIRDGKI-DLYQCVVPTTWNAS--PRDPKGQIGAYEAALMNT 555 LG++ I + P N P +G + A AL+ T Sbjct: 353 LGYYIVSDGSPIPYRVRIRTPDFVNLQSLPYMAQGAMLADIVALIGT 399 >UniRef50_C7NUN7 NADH dehydrogenase (Quinone) n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NUN7_HALUD Length = 419 Score = 133 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 18/288 (6%) Query: 10 YTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDA 68 + + +G + V P ++ + ++ + + + RG+E + + + Sbjct: 1 MSEDVSGTEIPVGPQHPSLKEPANFTLTVDGEVITGADLKLSYNHRGIEQAVLSKSYLEN 60 Query: 69 WAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 +ERICG+C+ H + +ED + + VP AN IR ++ H H++ Sbjct: 61 IYLLERICGICSHAHTTSFAIGVEDLLDLDVPRRANYIRTLIGELERIHSHMLWLGVAGH 120 Query: 129 MDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ---LGIFRNG 185 I + R + L + Y + +++ + Q + + Sbjct: 121 E--IGFDTLWQYAWRDREIVLDLLEEITGNRIHYSINTIGGVRQDLTAEQRETVLEKMDE 178 Query: 186 YWGHPQYKLPPEANLMGFAHYLEAL-DFQREIVKIHAVFGG-----------KNPHPNWI 233 + L N E + E+ + + G + P Sbjct: 179 LEERIDFYLETVPNEETVRMRCENVGTVSAELAREYCAAGPVGRASGLPVDVRRDAPYAA 238 Query: 234 VGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 M + D +G + A R+ + I+ ++ D A Sbjct: 239 YDEMDFDVITDTAGDLLARTTVRIREIAESISIIRQAAADIPDGDLKA 286 Score = 92.3 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 57/190 (30%), Gaps = 22/190 (11%) Query: 403 WRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWA 462 GP+ R G V + + I T G +L R Sbjct: 210 LAREYCAAGPVGRA-----SGLPVDVRRDAPYAAYDEMDFDVITDTAGDLLARTTVRIRE 264 Query: 463 AGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-G 521 + + ++ +G+L + E V EAPRG L H+ Sbjct: 265 IAESISIIRQAAADIPDGDLKASPKPVQALLAQIPEDDVVSRYEAPRGELIHYIRADGTD 324 Query: 522 KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACST 581 + VPT N AL + +A + DPC++C++ Sbjct: 325 TPERVHIRVPTLANWP---------TVVEALRGSYIADT------PIVVAGIDPCISCTS 369 Query: 582 HV-LGDDGSE 590 + + DGS Sbjct: 370 RIGVETDGSH 379 >UniRef50_Q00390 Coenzyme F420 hydrogenase subunit alpha n=9 Tax=Euryarchaeota RepID=FRHA_METVO Length = 398 Score = 133 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 2/129 (1%) Query: 16 GRRLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVER 74 G+ + ++P TR EGH + + ++D ++ T RG E L G+ A V R Sbjct: 2 GKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKPAEFAPIAVSR 61 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 CG+C HA ++V AIEDA GI P + ++R + H H +H + L D+I Sbjct: 62 FCGICPIAHATSAVEAIEDACGIVPPKDGLLLRELTGLGNKMHSHPLHEF-LIAPDFIPE 120 Query: 135 LDALKADPR 143 D ++ R Sbjct: 121 KDRVEYITR 129 Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats. Identities = 51/247 (20%), Positives = 82/247 (33%), Gaps = 57/247 (23%) Query: 339 LVDPQQVQE---FVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERY 395 LVD ++ E + D + + R + Y P DV + +Q + Sbjct: 198 LVDGTEIPEKLGYHDFGYLATDSTYGNRENIEQKKVHEYTPYDVYEKEVAVQACQLFQE- 256 Query: 396 SWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCR 455 + G MEVGP AR + + + R Sbjct: 257 -------YNGRLMEVGPRAR---------------------FAKFHDFKEKGAMAIHIAR 288 Query: 456 AHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHW 515 A+E + ++L + +P E G+G EA RG H Sbjct: 289 AYENVIHVKRAMEIIEELNVDGLT--------RAKDPILGDGEKLGLGVHEAARGHNTHQ 340 Query: 516 AAIRD-GKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFD 574 A+I + G+I Y +V TTWN P K Y+ A + ++D Sbjct: 341 ASIDEKGRITYYNAIVATTWNI-PLIGKAVEAHYKFA---------------EHVVRAYD 384 Query: 575 PCLACST 581 PC++C+T Sbjct: 385 PCVSCAT 391 >UniRef50_A6Q6W4 Ni-Fe hydrogenase, large subunit HycE n=3 Tax=Epsilonproteobacteria RepID=A6Q6W4_SULNB Length = 455 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 60/347 (17%), Positives = 117/347 (33%), Gaps = 37/347 (10%) Query: 18 RLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ V PI I + ++++ V +RG+E +L+G+ +A +ERI Sbjct: 113 QVSVGPIHAGIIEPGHFHFSQAGEDMLHQEVRHFYKYRGIEKMLEGKTLLEAKPVIERIS 172 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G + + A + A G+++P + +L HL +I Sbjct: 173 GNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLEMERIIHHLTDLG------FIPNDA 226 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQ-----------NRLKKFVEGGQLGIFRNG 185 A S+L++ ++ G+ F + L +++G Q I Sbjct: 227 GFGAALAFASKLSEDARRQLQNVTGHRFGFDAIGFENKVLDISSLYDYLDGLQKDIAFFE 286 Query: 186 YWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG----KNPHPNWIVGGMPCAI 241 W L + G + L + + V + A G + P ++ G I Sbjct: 287 TWIMDIPSLWDRFDTTGILQKADVLKY--DTVGVVARASGFSLDRRSEPFYLEHG--FEI 342 Query: 242 NIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCV 301 ++SG V A RL V++ I F+ + +I G Sbjct: 343 QTEQSGDVAARFKVRLQEVKNSIVMMKHFLEE---------DDTHIDIEKIKDGDYTAFA 393 Query: 302 LSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEF 348 S ++ + K ++ V + F N + L+ P + Sbjct: 394 ESSLG--ELFMNIEIKDGVIERFFVRDPSFMNWQTLHLMMPNNIIAD 438 >UniRef50_P31895 Carbon monoxide-induced hydrogenase n=14 Tax=Bacteria RepID=COOH_RHORU Length = 361 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 89/277 (32%), Gaps = 15/277 (5%) Query: 14 NAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 + + V P+ +E M + ++ + V++ ++ G + RG+E + R+ Sbjct: 1 MSTYTIPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLT 60 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ER+C +C+ H A+E G+ VP A +R I T H+ + LA + Sbjct: 61 ERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGF 120 Query: 133 DVL--------DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 D L + ++ +++ Y D R + +L Sbjct: 121 DSLFMHVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLR 180 Query: 185 GYWGHPQYKLPPEANLMGFAHYLEALDFQR------EIVKIHAVFGGKNPHPNWIVGGMP 238 P + L A D + + P + + Sbjct: 181 DEIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLD 240 Query: 239 CAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 + + E G V + M R + I + ++ Sbjct: 241 FEMALGEHGDVWSRAMVRWQEALTSIGLIRQCLRDMP 277 Score = 88.4 bits (217), Expect = 6e-16, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 27/173 (15%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+AR + +V + + L R + R EA + G ++ Sbjct: 215 GPVARGSGHAYDVRKQAPYAVYDRLD-FEMALGEHGDVWSRAMVRWQEALTSIGLIRQCL 273 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCV 529 + K P V TEAPRG L ++ + + + Sbjct: 274 RDMPDG----------PTKAGPVPPIPAGEAVAKTEAPRGELIYYLKTNGTDRPERLKWR 323 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH 582 VPT N A + +++ I ++S DPC++C+ Sbjct: 324 VPTYMNWD---------ALNVMMAGARISD------IPLIVNSIDPCISCTER 361 >UniRef50_Q57935 Uncharacterized protein MJ0515 n=17 Tax=Euryarchaeota RepID=Y515_METJA Length = 380 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Query: 12 INNAGRRLVVDPITRI-EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 ++ + + PI + + +R ++ ++ + + + G + RG+E I++G+ Sbjct: 1 MSENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIH 60 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 ER+CG+C+ VH + IE I++PD A +R + H HL+ Sbjct: 61 LAERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLI 111 Score = 87.7 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 30/196 (15%) Query: 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGK 465 VGP+ R + D S + + + + R++ R E + Sbjct: 211 RTRAVGPICRGS-GLPESDWRLRHSTYQELKFKPVWREEGDN-FARMMVRHEEIIESVRL 268 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKID 524 ++ + + +G EAPRG + + I G I Sbjct: 269 IREALEHYEECSGD----------IRVKAEIKGGKGEWRNEAPRGEVTYRMEITDGGIIK 318 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTH-- 582 PT N AY+ L + + S DPC++C+ Sbjct: 319 RIMIRTPTVMNLE---------AYKYMLKTCPTV-----ADAVSAYTSIDPCVSCTERCI 364 Query: 583 VLGDDGSEL-ISVQVR 597 V DG E+ IS++ R Sbjct: 365 VAVKDGKEIPISIKFR 380 >UniRef50_Q3A825 NADH-quinone oxidoreductase subunit B/C/D n=103 Tax=cellular organisms RepID=NUBCD_PELCD Length = 794 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 83/291 (28%), Gaps = 18/291 (6%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + + + ++ G RG E I + + + +RI + ++ LA Sbjct: 423 HGILRVILQLAGEEIVDLDSEIGYHHRGAEKIAERQHWNQYIPYTDRIDYLAGSLNNLAY 482 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 +Y++E G++VP A IR ++ HLV A + + + + Sbjct: 483 LYSVETLCGVEVPPRARYIRVLLSELFRIASHLVWLGTFAHD--VGAMTPVFYAFDSREK 540 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 + + + + + G L + L G + Sbjct: 541 IFDIIELITGGRMHPAWFRIGGVPDDLPDGWLAAVEAFTRDFEARIDEFDRLLTGGPIFR 600 Query: 208 ---EALDFQREIVKIHAVFGG------------KNPHPNWIVGGMPCAINIDESGAVGAV 252 E + + F G + P + G A Sbjct: 601 ARTEGIGTVSRQQAVELGFSGPNLRATGLAWDLRKSMPYGGYDEFDFDVVTAGGGDCFAR 660 Query: 253 NMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLS 303 + RL ++ + + ++ + + GL D L Sbjct: 661 YLVRLGELRQSLRIVRQAAEGMPQGRWISDQYRYA-YPKREDGLQDIESLI 710 >UniRef50_C7I0C0 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=1 Tax=Thiomonas intermedia K12 RepID=C7I0C0_THIIN Length = 532 Score = 131 bits (329), Expect = 8e-29, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 97/322 (30%), Gaps = 22/322 (6%) Query: 14 NAGRRLVVDPI-TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 +RL P+ I + + ++ R +E QG Sbjct: 173 PDIQRLPFGPVRADIVESAQFLFFYIGEGILHYHPRLFYKHRAMEGRFQGATLATGAVLA 232 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ER+ G+ + HALA A+E A+G + P A +R ++ ++HL + L+ + Sbjct: 233 ERVSGIDSVAHALAFAQAVEGAMGWRAPPRARYLRVVLAELERLYNHLHYLGHLSKTTTL 292 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 V +A + + Q S L++ ++ L + Sbjct: 293 KVGEAEGHLLEER--VKQINGRLTGSRFLRGLITPGGLRRDLDITGLDKALDSVNDEIDR 350 Query: 193 KLPPEANLMGFAHYLEALDFQREIVKIHAVFGG---------------KNPHPNWIVGGM 237 L N +L+ L + + A G + HP + Sbjct: 351 YLQRLEN---TRSHLDRLMTTGRLERQVAFDQGACGPIERASNLDRDLRRDHPYANYEKV 407 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 ++ + + G A +M R+ ++ + I + L + G GL Sbjct: 408 RFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTIGRTKPGEVLRF-DVMEDADPQGEGLG 466 Query: 298 DKCVLSYGAFPDIANDFGEKSL 319 G + L Sbjct: 467 WVEATRGGLLYAVHLSEDRTRL 488 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 22/159 (13%), Positives = 48/159 (30%), Gaps = 16/159 (10%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+ R + ++P+ R + R E + + ++ Sbjct: 383 GPIERASNLDRDLR-RDHPYANYEKVRFSVPVQQGGDAHARSMVRMEEIRESLAIIRQTI 441 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI--RDGKIDLYQC 528 + K G + + + G+G+ EA RG L + + ++ + Sbjct: 442 GR----TKPGEVLRFDVMEDAD----PQGEGLGWVEATRGGLLYAVHLSEDRTRLQRVKI 493 Query: 529 VVPTTWN-----ASPRDPKGQIGAYEAALMNTKMAIPEQ 562 P+ N + D A A +A ++ Sbjct: 494 KEPSFSNWRVFPFTVEDSNMMDYAINEASFGLSIAGADR 532 >UniRef50_Q0W2B9 Hydrogenase, large subunit-like protein (HycE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W2B9_UNCMA Length = 524 Score = 131 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 50/273 (18%), Positives = 94/273 (34%), Gaps = 18/273 (6%) Query: 19 LVVDPITR--IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++ + V+ + G + +G+E I + ER Sbjct: 170 IPVGPVHAGVIEPGHFRF--SVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERT 227 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 G H+ A A+E GI+VPD A IR + L ++HL ++ +V Sbjct: 228 SGDNGMAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVG 287 Query: 136 DALKADPRKTSELAQSL---SSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQY 192 R+ S +S Q+ ++ +E + I + Sbjct: 288 AQHAYILRERMLQLNECITGSRLLRSVNKIGGVRQDLTREDIEKIRTAIIKAKLDFKDFV 347 Query: 193 KL------PPEANLMGFAHYLEA---LDFQREIVKIHAVF-GGKNPHPNWIVGGMPCAIN 242 L + LEA L+ + V + HP + A++ Sbjct: 348 DLVNRQTSILDRTETTGKLPLEAAVSLNIVGPGARASGVSRDVRRDHPYAAYSDLNFAVH 407 Query: 243 IDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 I + G V A ++ + ++ ++ + Sbjct: 408 IRKEGDVNARMQVKIGEIYESMSIIEQALDRLP 440 Score = 68.4 bits (165), Expect = 7e-10, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 12/132 (9%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR G + V + +L + G + R + Sbjct: 377 VGPGARA-----SGVSRDVRRDHPYAAYSDLNFAVHIRKEGDVNARMQVKIGEIYESMSI 431 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWA-AIRDGKIDLYQC 528 ++ + L G + A+ P G+ EAPRG L HW + + + ++ Sbjct: 432 IEQALDRLPAGKIRAATGN------IPQGRVGISLVEAPRGELLHWILSGENDRPFRHKI 485 Query: 529 VVPTTWNASPRD 540 P+ N + Sbjct: 486 RDPSFCNWLAME 497 >UniRef50_B1ZRT0 NADH-quinone oxidoreductase subunit D 1 n=16 Tax=Bacteria RepID=NUOD1_OPITP Length = 426 Score = 131 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 81/291 (27%), Gaps = 19/291 (6%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R ++ + + + G + RG E I + + +R+ + Sbjct: 50 HPST--HGVLRIQMELEGEILTKADPIIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPL 107 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 + +A V A+E G+ VP IR I HL+ + L Sbjct: 108 ANNMAYVIAVEKLAGLTVPPRCQAIRVITAELARISSHLMGLGAFGLD--VGAWTVLVLS 165 Query: 142 PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHPQYKLP-PE 197 + L + + + + V G L G F + + + L Sbjct: 166 LNQREFLYNLFEDLTGARFTTSYTRIGGVTRDVPPGWLENVGTFCDKFLPALEEILSLLT 225 Query: 198 ANLMGFAHYLEALDFQREIVKIHAVFGG-----------KNPHPNWIVGGMPCAINIDES 246 N + + +E + + G + P + + Sbjct: 226 RNKIFLDRTVGVGVISKEDAIAYGITGPNARGSGIATDLRKDRPYSGYEQYEFDVPVGTK 285 Query: 247 GAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 G + R ++ + I N D A G LS Sbjct: 286 GDCYDRYLVRGEEMRQSVRIIRQVIKNFPGGDWYATEAKKVFLPPKGKVLS 336 >UniRef50_A0B812 F420H2 dehydrogenase subunit C n=6 Tax=Archaea RepID=A0B812_METTP Length = 390 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 82/262 (31%), Gaps = 15/262 (5%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G ++ I + V + G + +G+E I++ R + +R+C + + + A Sbjct: 43 GPFLLDLLIEGERVKKAFLDVGYIHKGIEKIMENRTYLQGIVYTDRMCYLASITNNEAYC 102 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV----HFYQLAGMDWIDVLDALKADPRK 144 A+E +GI P+ A IR I+ HL+ L + + Sbjct: 103 GAVEKLLGITPPERAQYIRVILAELSRIQSHLLGTGEFLTLLGAATYSPFQYMIIDREDI 162 Query: 145 TSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK-----LPPEAN 199 + + + F V+N L I + +Y P Sbjct: 163 VYLMESITGARITHTFVRFGGVRNDLPDGFADKARPILKRMRERTEEYMDLLHSDPIYTR 222 Query: 200 LMGFAHYLEALDFQREIVKIHAVFGGKNPH------PNWIVGGMPCAINIDESGAVGAVN 253 M L D +R V + P+ P + + + ++G A Sbjct: 223 RMRGIGVLSPGDARRLGVSGPPLRASDTPYDMRREDPILVYPDLDFKVVTRKAGDAEARV 282 Query: 254 MERLNLVQSIITRTADFINNVM 275 RL + I ++ + Sbjct: 283 EVRLEEILESIHIIEQCLDQIP 304 Score = 53.8 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 48/168 (28%), Gaps = 23/168 (13%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP R + V + + R+ R E + ++ Sbjct: 242 GPPLRASDTPYDMRREDPILVYPDLDFKVVTRKAGD-AEARVEVRLEEILESIHIIEQCL 300 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVV 530 D++ EK P E PRG +G + + DG Y+ V Sbjct: 301 DQIPDG--------PIQEKLPKKIKPEPGEAYYRVEDPRGEMG-FYVVSDGSEKPYRVKV 351 Query: 531 PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 +G + AY AL + +++ S D C + Sbjct: 352 -----------RGPVYAYMQAL--PPLLEGAYVADVVAIAGSMDACTS 386 >UniRef50_Q0W3I1 Ech hydrogenase, subunit E n=2 Tax=Euryarchaeota RepID=Q0W3I1_UNCMA Length = 359 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 91/266 (34%), Gaps = 21/266 (7%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + ++PI R ++ ++ + V + G + RGLE + D A ER+CG+ Sbjct: 13 VWIEPI-------RLKLALDGELVKDVELEAGYVHRGLEKKFEW-DYNKAAYLAERVCGI 64 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ-LAGMDWIDVLDA 137 CT H+ A+E + +++P A +IRNIML H HL+ L + + ++ Sbjct: 65 CTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFML 124 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + ++ + + R ++ F + + Sbjct: 125 CFRNREIVLDVFERTTGNRVLHGINLVGGVTRNIGPEMAQEIMDFCDTIEKRCRDLEDMI 184 Query: 198 ANLMGFAHYLEALDFQRE------------IVKIHAVFGGKNPHPNWIVGGMPCAINIDE 245 + ++ + + + + P + G + ++E Sbjct: 185 VHSRTIKDRMKGVGILSKQTALDYSVVGPIARGSGIPYDVRIDAPYLLYGELKMKHVVEE 244 Query: 246 SGAVGAVNMERLNLVQSIITRTADFI 271 V A ++ R+ + I + Sbjct: 245 GCDVWARSIVRVRELFQSIDLIRQLV 270 Score = 73.8 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 34/175 (19%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLS----GIQSTLGRILCRAHEAQWAAGK 465 VGP+AR G V + L + R + R E + Sbjct: 211 VGPIAR-----GSGIPYDVRIDAPYLLYGELKMKHVVEEGCDVWARSIVRVRELFQSIDL 265 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-ID 524 ++ ++ L + LA + + G E PRG L ++ + K +D Sbjct: 266 IRQLVP-MLEGLPDDILA--------KSKTMPDGDGFARVEPPRGELFYFVRGKKSKELD 316 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 + T N P + ++A P+ I S+DPC+ C Sbjct: 317 RVKVRTSTYANGPALIP---------VIKGCQLADVG-PITI-----SYDPCIGC 356 >UniRef50_Q67P19 NADH-quinone oxidoreductase subunit D 1 n=1 Tax=Symbiobacterium thermophilum RepID=NUOD1_SYMTH Length = 404 Score = 130 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 19/289 (6%) Query: 14 NAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 L + P G +R ++ + + V+ G + G+E + A + Sbjct: 14 PERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQATTVM 73 Query: 73 ERICGVCTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 +R+ + + V A+E +GI+ +P+ A + R I+L HLV G+D Sbjct: 74 DRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGT-GGLD 132 Query: 131 WIDVLDALKADPRKTSEL--------AQSLSSWPKSSPGYFFD----VQNRLKKFVEGGQ 178 + ++ + + Q ++ G +D + ++ F++ Sbjct: 133 YGNIGTPIFWAFELRDRILDIFEHTTGQRMNPSYMRVGGLAYDLPHNFKEMVEDFLKVAP 192 Query: 179 LGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF---QREIVKIHAVFGGKNPHPNWIVG 235 I A + Y +AL + R + + + + +P Sbjct: 193 GRIQELKDVMLHNPIFVDRAKGVSVITYEQALRYGLTGRNLRVTGSDYDVRKYYPYLGYE 252 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQ 284 + + G + + + + ++N+ D I Sbjct: 253 NYDFKVPVYTDGDSWSRVAITFDEMFESLKIIRQALDNLPWDDRYIIDD 301 >UniRef50_B2V8R2 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=3 Tax=Aquificales RepID=B2V8R2_SULSY Length = 524 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 22/271 (8%) Query: 19 LVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 ++V PI IE GH R ++ ++++ + RG+E + +G+ + V ++ Sbjct: 170 ILVGPIHAGIIEPGHFRF--SLAGEHILQLEIRHFWKHRGVEKLAEGKTAEEVLEIVPKV 227 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCH---DHLVHFYQLAGMDWI 132 G + H LA V AIE ++P A IR + + + +Q + Sbjct: 228 SGDHSYAHTLAYVQAIEKLSNTEIPKRAKYIRVLFAELERLMCNLNDVAWLFQDVAYSFG 287 Query: 133 DVLDALKADPRKTSELAQSLSSWPKSS---PGYFFDV-QNRLKKFVEG----GQLGIFRN 184 + + A + + + K+ G D+ Q ++ ++ F Sbjct: 288 AQGMFILKEEVMRLNKALTGNRFNKNVLKIGGVSVDLNQEKINLIIDKLGYITDKFEFYK 347 Query: 185 GYWGHPQYKLPPEAN----LMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCA 240 L L L + + + + + HP I + Sbjct: 348 KIIFDSASILDRFETTGRILYETVKELSCIGYTARASDLKSDI--RKEHPYLIYDKLTFT 405 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFI 271 E G A RL+ ++ I+ + + Sbjct: 406 SQTFEEGDCFARLKCRLSDIEDSISIIKEVL 436 Score = 45.3 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 37/128 (28%), Gaps = 12/128 (9%) Query: 413 LARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDK 472 AR + ++ + R+ CR + + + ++ Sbjct: 380 TARASDLKSDIRKEHPYLIYDKLTFTSQTFEEGD-CFARLKCRLSDIEDSISIIKEVLSD 438 Query: 473 LMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQCVVP 531 L +W +G++E RG + ++ +GKID + P Sbjct: 439 LPDGEIFTQSNPLPANRWT----------LGYSEGQRGNIMYFVKTDKEGKIDRLKIRDP 488 Query: 532 TTWNASPR 539 + N Sbjct: 489 SFNNWQAI 496 >UniRef50_Q5LH50 NADH-quinone oxidoreductase subunit C/D n=34 Tax=Bacteroidetes RepID=NUOCD_BACFN Length = 530 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 100/331 (30%), Gaps = 24/331 (7%) Query: 4 QYETQGYTINNAGRRLV-VDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 Y+TQ I + +V + P G MR V++ + + +CG + RG+E + + Sbjct: 158 TYQTQENVIFDDREYVVNIGPQHPATHGVMRFRVSLEGETIKKLDANCGYIHRGIEKMNE 217 Query: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 A +R+ + + A IE A+GI+V + IR IM HL+ Sbjct: 218 SLTYPQTLALTDRLDYLGAHQNRHALCMCIEKAMGIEVSERVKYIRTIMDELQRIDSHLL 277 Query: 122 HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSS------------PGYFFDVQNR 169 + LA + L A R + + R Sbjct: 278 FYSCLAMD--LGALTAFFYGFRDREMILDMFEETCGGRLIMNYNTIGGVQADLHPNFIPR 335 Query: 170 LKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDF-----QREIVKIHAVFG 224 +KKF+ + I +G +A+ F Sbjct: 336 VKKFIPYLRGIIHEYHDVFTGNVIARQRLKGVGVLSREDAISFGCTGGTGRASGWACDVR 395 Query: 225 GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI-PDALAIG 283 + P + + + G A M R++ + + I+N+ P + Sbjct: 396 KRM--PYGVYDKVDFKEIVYTEGDSFARYMVRMDEIMESLNIIEQLIDNIPEGPIQEKMK 453 Query: 284 QFNKPWSEIGTGLSDKCVLSYGAFPDIANDF 314 + + +G F + D Sbjct: 454 PIIRVPEGSYYTAVEGSRGEFGVFLESHGDK 484 >UniRef50_A5UMA1 Coenzyme F420-reducing hydrogenase, alpha subunit, FrhA n=3 Tax=Methanobrevibacter RepID=A5UMA1_METS3 Length = 405 Score = 128 bits (322), Expect = 5e-28, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 5/172 (2%) Query: 18 RLVVDPITRIEGHMRCEVNINDQNVITN-AVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 R+V+ P +R EGH + ++D+ ++T T RGLE ++ G++P A +RIC Sbjct: 4 RIVISPTSRQEGHAELVMEVDDEGIVTKGRYLSITPVRGLEKMVAGKNPETAPVLCQRIC 63 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI---D 133 GVC H LASV AI+ ++ I+VP ++R LA + +H + L D++ D Sbjct: 64 GVCPIPHTLASVEAIDHSLDIEVPKAGKLLRQATLAAHGVNSAAIH-HFLIAPDFVPEED 122 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNG 185 A+K+ + + + + + + Sbjct: 123 FTTAVKSVSAVRKNVQYVVDMLAGEGIHPSDIRVGGMARNITSATKDKLIDR 174 >UniRef50_D2PDB9 NADH dehydrogenase (Ubiquinone) n=10 Tax=Sulfolobaceae RepID=D2PDB9_SULIS Length = 410 Score = 128 bits (321), Expect = 6e-28, Method: Composition-based stats. Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 17/294 (5%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 L V P GHMR V +N + + G + R +E + + R+ VER + Sbjct: 30 LNVGPQHPGSGHMRIFVKLNGDIIEDVDLDVGYVHRTVEKLSENRNYMHLIPLVERPAIL 89 Query: 79 CTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDAL 138 + L + A+E +G+ VP+ A +R+ HL L+ ++ Sbjct: 90 DSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILSI--FLGHSTGF 147 Query: 139 KADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY---------WGH 189 L + + + + +++ + + W Sbjct: 148 MWGFGDREVWVTILEALTGARVTNSYVIPGGVRRDISQEIKDMTLKAISYQRRRLEDWKK 207 Query: 190 PQYKLPP---EANLMGFAHYLEALDFQREIVKI---HAVFGGKNPHPNWIVGGMPCAINI 243 + P +G A+ + + + + P + I + Sbjct: 208 IFFYNPSIRARLENVGVMSKENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPV 267 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLS 297 + G A + RL ++ + I N+ + L+ F + Sbjct: 268 YKEGDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPTRLKKYW 321 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 27/147 (18%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP R Y+ V ++ + L G L R + Sbjct: 235 AVGPNLRASGVYYD-----VRKIEPYGAYDKLDFEIPVYKEGDGLARGLVRLEEIEQSMR 289 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATW---------------------PTECRGVGFTEA 507 ++++ N+ GN+ + K P T P + + EA Sbjct: 290 ILEQIIKNIPEGNILSDRFFKQIPPTRLKKYWETYRRIVLPGYYASFRPPKGEAISRVEA 349 Query: 508 PRGALGHWAAIRDG-KIDLYQCVVPTT 533 RG L ++ K + + P+ Sbjct: 350 GRGELVYYVVSDGSPKPYRLRMITPSY 376 >UniRef50_A6LMC4 NADH-quinone oxidoreductase subunit D n=14 Tax=cellular organisms RepID=NUOD_THEM4 Length = 367 Score = 128 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 48/344 (13%), Positives = 98/344 (28%), Gaps = 28/344 (8%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G+ + + V+ G + RG E +++ R A + RIC ++ L Sbjct: 16 HGNFSVHMYVEGDTVVKARPLPGFLHRGFEKLMERRLWYQNLALIPRICVPEPDINELCY 75 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A+E I VP+ A IR I+L +HL F + G I + Sbjct: 76 ALAVEKIAKIDVPERAQWIRMIVLELARIANHLWSFSGIGGP--IGLYTGSFWGTADRDR 133 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 + + + + + V ++K + ++ + + +LP L+ + Sbjct: 134 ILDIFENLTGARVYHMYIVPGGVRKDLT-PKIEKMILETLDYIESRLPDYEKLILKNRIV 192 Query: 208 EAL--DFQREIVKIHAVFGG--------------KNPHPNWIVGGMPCAINIDESGAVGA 251 + + G + P + + G A Sbjct: 193 HTRLKGIAKLDRETALEMGVTGVGLRATGVPYDIRKVDPYLFYDKVDFEVPFSTDGDAFA 252 Query: 252 VNMERLNLVQSIITRTADFINNVMIP---DALAIGQFNKPWSEIGTGLSDKCVLSYGAFP 308 + + I + + + ++ G + G G + Sbjct: 253 RVYLKFREIFQSIKIVKQALEKMPVGKVNTPISEGSALRFRVPKGQAYVHIESTR-GEYG 311 Query: 309 DIANDFGEKSLLMPGGAVINGD--FNNVLPVDLVDPQQVQEFVD 350 G + P V+ G + V+ P E V Sbjct: 312 YYMVSDGGE---KPYRVVVRGASYPQTFIGVEKYLPGTRIEDVP 352 >UniRef50_B1ZUJ2 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Bacteria RepID=NUOD2_OPITP Length = 399 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 36/272 (13%), Positives = 76/272 (27%), Gaps = 14/272 (5%) Query: 15 AGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 + + P G +R + ++ + V G + R E + + R Sbjct: 38 ETFTINLGPQHPAAHGVLRVLMRMDGEWVENAEPVIGYIHRMHEKMGENRTWAKFLPNTS 97 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY--QLAGMDW 131 RI + + A V +E + I+VP+ A IR I H V + L + Sbjct: 98 RIDYLSAMHYTHAWVGVVERGLKIEVPERAEYIRVITSELNRIASHQVWWGALLLDLGGF 157 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQ 191 +L A + L + F + N G + Sbjct: 158 TPILYAFDDREKILDLLEGLCGARLTYCYYRFGGLYNDADDDFLKGTREFVKYMRPRLKM 217 Query: 192 YKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG-----------KNPHPNWIVGGMPCA 240 Y+ N++ + + + G + P + + Sbjct: 218 YRDLVTDNVILRQRLTGIGPISADTCRKYGATGPVIRGSGVAYDVRRAEPYSVYPKLQFK 277 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFIN 272 I A + R++ ++ + ++ Sbjct: 278 IPTYPECDSMARYLVRMDEMEESLNIIEQCLD 309 Score = 48.8 bits (114), Expect = 7e-04, Method: Composition-based stats. Identities = 26/157 (16%), Positives = 42/157 (26%), Gaps = 11/157 (7%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP+ R + A SV + +P ++ R L R E + + ++ Sbjct: 248 ATGPVIRGSGVAYDVRRAEPYSVYPKLQ-FKIPTYPECDSMARYLVRMDEMEESLNIIEQ 306 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK--IDLY 526 D + K EA RG + DGK Sbjct: 307 CLDLI-------QPGPFMAPKVPRVIRLPAGDYTYAVEAARGRFMVRV-VSDGKENPYRA 358 Query: 527 QCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQP 563 + P+ N S + + AL P Sbjct: 359 RLRTPSFGNLSLFEETSRGMLLPDALAMMGSLDLVIP 395 >UniRef50_A9B4Z7 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=Bacteria RepID=NUOD1_HERA2 Length = 422 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 82/268 (30%), Gaps = 19/268 (7%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R V +N +NV+ A G + G+E ++ + + +R+ + Sbjct: 44 HPST--HGVLRLAVELNGENVVQLAPDVGFLHTGIEKTIETKTYTKSIVLTDRMDYLAPM 101 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKAD 141 + + V AIE + VP+ A +R ++L + HLV +D + + Sbjct: 102 SNNMVYVAAIEKLMQQDVPERAQTLRVLLLELTRINSHLVWLGT-HALD-LAAMSVFFYA 159 Query: 142 PRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHPQYKLPPEA 198 R+ + + + L + + F + Sbjct: 160 MREREYILDIFEMLTGARMMTSYFRVGGLAWDIPADFIPTVEDFLTHFLPKVDEYEDLLT 219 Query: 199 NLMGFAHYLEALDFQREIVKIHAVFGG------------KNPHPNWIVGGMPCAINIDES 246 N + + + + I G + P + + ++ Sbjct: 220 NNLLWKQRTKGVGVVNAADAIALGLSGANLRASGVDWDLRKTMPYSGYETYQFDVPVGQA 279 Query: 247 GAVGAVNMERLNLVQSIITRTADFINNV 274 G + R+ ++ + I V Sbjct: 280 GDIYDRYRCRVQEMRESVKIARQAIERV 307 Score = 52.2 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 23/187 (12%), Positives = 47/187 (25%), Gaps = 39/187 (20%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 G R S ++P+ R CR E + + + Sbjct: 246 GANLRASGVDWDLRKTMPYSGYETYQ-FDVPVGQAGDIYDRYRCRVQEMRESVKIARQAI 304 Query: 471 DKLMTNLKNGNLATASTEKWEPATW--------------------PTECRGVGFTEAPRG 510 +++ + P + P E+PRG Sbjct: 305 ERVKQMHGQPYVTENRKVAPPPKSEITYSMESLIHHFKLWTEGFRPPRGSAYAAIESPRG 364 Query: 511 ALGHWAAIRDGKIDLYQC--VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILR 568 +G + + DG ++ P+ N +A + +++ Sbjct: 365 EIGCYV-VSDGTPKPWRVHFRAPSFINLQAL---------------PHIAKGKLMADLVA 408 Query: 569 TLHSFDP 575 + S DP Sbjct: 409 LIASIDP 415 >UniRef50_D2R5G7 NADH dehydrogenase (Quinone) n=2 Tax=Planctomycetaceae RepID=D2R5G7_9PLAN Length = 404 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 50/356 (14%), Positives = 111/356 (31%), Gaps = 46/356 (12%) Query: 2 STQYETQGY--TINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 S+ +++ Y T+N + P T +R + ++ + V+ G + G E I Sbjct: 8 SSTVKSEDYLWTLNFGPQ----HPAT--HTTLRLVLKLDGERVVDAVPDIGYLHSGFEKI 61 Query: 60 LQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 + D +R+ + + +A A+E +GI++ IR I+ DH Sbjct: 62 GEHLDFNQYVTVTDRMNYISPMANNVAWHGAVEKLMGIEITPRCKYIRTIICELARISDH 121 Query: 120 LVHFYQLAGM--DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFD--------VQNR 169 L+ + + L A R + +S V + Sbjct: 122 LLSTGAMGLDTGAFTFFLYAFYQRERIYDIFETLCGARFTNSYTRVGGLSQDMTPLVIEK 181 Query: 170 LKKFVEG------------GQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIV 217 ++ F+ + IF + G N+ A R++ Sbjct: 182 IRDFLRTFPQTIDDMERLVNRNRIFVDRMKGVGLLSKERATNMSATGPVARASGVTRDL- 240 Query: 218 KIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM-- 275 + P G + + +G A R+ ++ + A + N+ Sbjct: 241 --------RKDEPYLAYGDLDFQVCCATAGDCFARYYVRMAEMRESLKIVAQALENLPAG 292 Query: 276 -----IPDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAV 326 + D A+ + + I ++ ++ + N+ ++ P G + Sbjct: 293 PVNVGMDDRAALPSKAEVYQTIEGTITHFELVMLNRGFTVPNEEVYSAIEAPNGEL 348 Score = 48.4 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 20/185 (10%), Positives = 39/185 (21%), Gaps = 31/185 (16%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP+AR + + R R E + + + Sbjct: 226 ATGPVARASGVTRDLRKDEPYLAYGDLDFQVCCATAGD-CFARYYVRMAEMRESLKIVAQ 284 Query: 469 FFDKLMTNL--------------------KNGNLATASTEKWEPATWPTECRGVGFTEAP 508 + L G + EAP Sbjct: 285 ALENLPAGPVNVGMDDRAALPSKAEVYQTIEGTITHFELVMLNRGFTVPNEEVYSAIEAP 344 Query: 509 RGALGHWAAIRDGKID-LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 G LG + + +C P+ + S + + ++ L L Sbjct: 345 NGELGFYLVGDGSDVAYRARCRPPSFIHFS---------LFPELIRGHTLSDVVAVLGSL 395 Query: 568 RTLHS 572 + + Sbjct: 396 NIIAA 400 >UniRef50_D2RET0 NADH-quinone oxidoreductase, B subunit n=1 Tax=Archaeoglobus profundus DSM 5631 RepID=D2RET0_ARCPR Length = 709 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 16/285 (5%) Query: 5 YETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRD 64 + + LVV P GHMR V ++ + G + RG+E I + R Sbjct: 338 TKLPDEFVKGDEYILVVGPQHPGSGHMRLIVKLDGDIIKDVIPDPGYVHRGVEKIAESRI 397 Query: 65 PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY 124 VER C + + V AIE+A+GI+V + A IR I+ HL Sbjct: 398 YIKNIPLVERPCITDFANYDICYVKAIEEALGIEVSERAKYIRTILAELCRIGTHLYDAG 457 Query: 125 QLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLG---- 180 L+ ++ + ++L+ + F V ++ V +L Sbjct: 458 ILSI--FLGHSTGFMWAFGLREFVCEALTILTGARVTGSFIVPGGVRWDVSDEKLRRVRE 515 Query: 181 IFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG----KNPHPNWIVGG 236 I +++ N A ++ K + G N +W + G Sbjct: 516 IVLAMRRRLEKFEKMFVKNPTVVARLENVGILSKKDAKELGIVGPFLRASNVRHDWRLKG 575 Query: 237 ------MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 + + E G A + R+ + I + ++ Sbjct: 576 YEAYDCVDWDVVTAEEGDSYARLLVRVEEINQSIKIIDQLVRDLP 620 Score = 53.4 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 12/130 (9%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP R + D ++ + + R+L R E + Sbjct: 558 VGPFLRASN--VRHDWRLKGYEAYDCVDWDVVTAEEGDSYARLLVRVEEINQSI----KI 611 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK---IDLY 526 D+L+ +L +G K P V E RG + + + DG+ + Sbjct: 612 IDQLVRDLPSGETKV-DMWKLTDLVLPL-GEFVSCVEGARGT-IYMSIVSDGESTTPYRF 668 Query: 527 QCVVPTTWNA 536 + V P+ +N Sbjct: 669 RIVTPSWYNL 678 >UniRef50_A3DKH4 NADH-ubiquinone oxidoreductase, chain 49kDa n=2 Tax=Desulfurococcaceae RepID=A3DKH4_STAMF Length = 406 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 19/324 (5%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + V P + + + + + ++ ++ G RG+E + + V R+CG Sbjct: 15 IPVGPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCG 74 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA-GMDWIDVLD 136 +C VHA V A+E+ + + + A +R + + H H++ +A + + + Sbjct: 75 ICNLVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLFM 134 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + D + + ++ S R V+ +L + Y Sbjct: 135 NIMLDRENIMKAKEIITGNRVLSDYMMIGGVRRDIDSVKKDKLLKIIDKVLPRLHYYKKL 194 Query: 197 EANLMGFAHYLEALDFQRE------------IVKIHAVFGGKNPHPNWIVGGMPCAINID 244 L + + + + G +P + Sbjct: 195 FMEDDTILKRLVDVGVIKRSDVTRYTFVGPPARASGVKIDVRVSEKYEVYGDIPFNMVTR 254 Query: 245 ESGAVGAVNMERLNLVQSIITRTADFINNV-----MIPDALAIGQFNKPWSEIGTGLSDK 299 G A + R + + + ++ +PD + + P + + Sbjct: 255 NEGDSWARMIVRWDEAIESLNMAKYILEHLPNDGNPVPDERRLPRRFPPGEAFTRVEAPR 314 Query: 300 CVLSYGAFPDIANDFGEKSLLMPG 323 L+Y D + P Sbjct: 315 GELTYYVMSDGKPKPYRLKIKTPS 338 Score = 95.7 bits (236), Expect = 4e-18, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 27/192 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR G V ++ ++P + + G R A + Sbjct: 222 VGPPARA-----SGVKIDVRVSEKYEVYGDIPFNMVTRNEGDSWARMIVRWDEAIESLNM 276 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQ-- 527 ++ +L N + P EAPRG L ++ + DGK Y+ Sbjct: 277 AKYILEHLPNDGNPVPDERRLPRRFPP--GEAFTRVEAPRGELTYYV-MSDGKPKPYRLK 333 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACS--THVLG 585 P+ N + + + + ++ L S DPC++C V+ Sbjct: 334 IKTPSFTNI---------------INSGYLYVGHTIADLPVILVSLDPCISCMERVTVID 378 Query: 586 DDGSELISVQVR 597 + + V ++ Sbjct: 379 LENNTRRKVPIK 390 >UniRef50_Q2YAA3 NADH-quinone oxidoreductase subunit C/D n=259 Tax=cellular organisms RepID=NUOCD_NITMU Length = 608 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 85/262 (32%), Gaps = 13/262 (4%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 + G R + ++ + +I G RG E + + + + +RI + ++ L Sbjct: 236 VHGVFRIVLQLDGEEIIDAVPEIGFHHRGAEKMGERQSWHTYIPYTDRIDYLGGVMNNLP 295 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA-GMDWIDVLDALKADPRKT 145 V A+E GI+VPD ++R +M HLV + + + + + D + Sbjct: 296 YVLAVEKLAGIEVPDRVKVMRVMMAEFFRIASHLVFYGTFTQDLGALSPVFFMFTDRERV 355 Query: 146 SELAQSLSSWPKSSPGYFFDVQ---------NRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 ++ +++ Y ++ F++ + L Sbjct: 356 FDVVEAICGGRMHPSWYRIGGVAQDLPNGWDRMVRDFLDYMPARLDEYDKIAVGNRILKA 415 Query: 197 EANLMGFAHYLEALDFQREIVKIHA---VFGGKNPHPNWIVGGMPCAINIDESGAVGAVN 253 +G EA+++ + A + + P + + G Sbjct: 416 RTRGVGGYSIDEAIEWGVTGPNLRACGFEWDFRKARPYSGYDQFEFDVPTGQHGDCYDRC 475 Query: 254 MERLNLVQSIITRTADFINNVM 275 R+ ++ + + N+ Sbjct: 476 AVRVQEIRQSLRIIDQCLENMP 497 >UniRef50_C7DI97 NADH dehydrogenase (Quinone) n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI97_9EURY Length = 387 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 45/290 (15%), Positives = 91/290 (31%), Gaps = 17/290 (5%) Query: 5 YETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGR 63 T + N R+ V PI G +R V+++ + G + RG+E +++ R Sbjct: 14 ARTTQKSENMPVMRINVGPIHPSTHGVLRLLVDVDGDTIENMTCHIGFLHRGVEKLMENR 73 Query: 64 DPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF 123 + ++ E++ V V+ +E A+ +V + A R I++ HL Sbjct: 74 MYMQSPSYTEKLDYVAPLGWDDLYVHTVELALQKEVKETAKYARVIIMEFQRIASHLFFI 133 Query: 124 YQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFF------------DVQNRLK 171 L D + R+ + + L S Y D +R Sbjct: 134 GALCN-DIGQMFTMFMWAFRERDAVLKFLEDISGSRMFYVNMRVGGLMRPLPDDFYDRAY 192 Query: 172 KFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKI---HAVFGGKNP 228 K E + + +G EA+DF + + + Sbjct: 193 KLTEYIEYKVKGYKDVIDDNSIFMERTKGIGTISKKEAIDFGLSGPNLRASGVEYDVRKE 252 Query: 229 HPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPD 278 +P + + + +G A R + I ++ + + Sbjct: 253 YPYYAYDRLKFKVPTSNAGDGYARYKMRYEEIFESIKIIRQALDKMPRDN 302 >UniRef50_Q2RJU4 NADH-quinone oxidoreductase subunit D n=94 Tax=Firmicutes RepID=NUOD_MOOTA Length = 371 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 8/171 (4%) Query: 2 STQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 + T+ +N + P T G R + ++ + V+ G + RG+E + + Sbjct: 5 AENLRTEEIQLNMGPQ----HPST--HGVYRALLTLDGEKVVGVENIIGYLHRGIEKLAE 58 Query: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 R + +R+ + ++ L V +E +G++VP+ A +R IM H+V Sbjct: 59 DRTYTQVIPYTDRLDYLAGMLNNLGYVQTVEKLLGLEVPERAEYLRVIMAELSRLASHMV 118 Query: 122 HFYQLAGM--DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRL 170 +A W + R + S S V + Sbjct: 119 MVASMALDLSGWTAWFPPFRERERILDLFEMTCGSRLTVSYMRIGGVAADI 169 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 38/151 (25%), Gaps = 10/151 (6%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R A S+ L+ S R + R E + +A ++ Sbjct: 222 TGPNLRACGLPFDLRKARPYSIYDRFDFDIPTLNNGDS-YDRFVIRLLEMEQSARIIRQA 280 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQC 528 ++L K E +G LG + G K Sbjct: 281 MEQLPDG--------PVQAKVPRVLKLPRGEVYHQIEGAKGILGFYLVSDGGSKPYRLHI 332 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 P+ N G + ++N Sbjct: 333 HSPSFVNLGALPRISVGGTIQDFVVNIASID 363 >UniRef50_Q60338 Coenzyme F420 hydrogenase subunit alpha n=15 Tax=Euryarchaeota RepID=FRHA_METJA Length = 415 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 122/441 (27%), Gaps = 59/441 (13%) Query: 168 NRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKN 227 K +E + GI Y+ + E L G + R I G Sbjct: 20 GHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFAPIAVMRIC-GICQTTHGIA 78 Query: 228 PHPNWIVGGMPCAINID--ESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQF 285 I + C + D + + + + DF+ + + + Sbjct: 79 S-CEAIENAIDCEVPDDGLLLRELVGIGNRLHSHPLHHLLTIDDFLKPDETDLKIELIKL 137 Query: 286 NKPWSEIG--------TGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPV 337 + ++G + G + + L + Sbjct: 138 IQRMRKVGQLVVDIVGGEGIHPPNIVIGGMRTNITERAKSRLYYALRQYEKDAYELYEKY 197 Query: 338 DLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSW 397 + + ++E + + H G + E ++ + Sbjct: 198 TELIERYLEEIGIPDLGAHEYPYIATHTTYGDRYAINWDDVTEIPAQRYYDDEEAKQTTT 257 Query: 398 IKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAH 457 I+ P + G E GP AR + S + + RA Sbjct: 258 IQIPLYAGVPAEGGPRARMV--------------------KFGNFREGGSAMDINIARAQ 297 Query: 458 EAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAA 517 E A + D+L N K + G+G EAPR H A Sbjct: 298 ENLGAVYRALEILDELDLNGKT-----------RAEVEYKDGFGIGVHEAPRATNTHMAE 346 Query: 518 I-RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + +DGKI Y+ + +TWN E A+ + ++D C Sbjct: 347 VGKDGKIKSYRIIAASTWNFP---------IVEKAIEGYPQQY------AEVIMRAYDIC 391 Query: 577 LACSTHVLGDDGSELISVQVR 597 +C+THV+ D ++VR Sbjct: 392 ASCATHVIVKDEETKEIIEVR 412 Score = 119 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 1/107 (0%) Query: 10 YTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMF-RGLEIILQGRDPRDA 68 +N R+ + P TR EGH + + ++++ ++ A T RG E +L+G+ A Sbjct: 1 MEVNFVTNRIEIAPTTRHEGHAKLILEVDEEGIVNKAYYLNTTPVRGFETMLKGKPAEFA 60 Query: 69 WAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLW 115 V RICG+C H +AS AIE+AI +VPD+ ++R ++ Sbjct: 61 PIAVMRICGICQTTHGIASCEAIENAIDCEVPDDGLLLRELVGIGNR 107 >UniRef50_Q8TY43 Ni,Fe-hydrogenase III large subunit n=1 Tax=Methanopyrus kandleri RepID=Q8TY43_METKA Length = 409 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 33/294 (11%) Query: 6 ETQGYTINNAGRRLVVDPITRI-EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRD 64 + + I R+ V P I + +R ++ + + V+ V G RG+E I++G Sbjct: 16 DVETGEIEPISHRVPVGPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMP 75 Query: 65 PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV--- 121 + A ER+CG+C+ H + + +E +R ++ HL+ Sbjct: 76 WQKAAFLAERVCGICSHAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANA 135 Query: 122 -HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL- 179 +FY I+ + + + + ++V ++ V QL Sbjct: 136 AYFYS------IEHETMFVWNMNTRERVLDCIEEITGNRILTGWNVVGGVRMDVTEDQLN 189 Query: 180 -----------------GIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAV 222 I +N + + + Y R + Sbjct: 190 NVLETLDAIRDDVITYRRIAKNDPFIKLRSRGVGVITKDHIRKYRVVGPQARASGVPESD 249 Query: 223 FGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI 276 + P + + + G A + R + I ++ + Sbjct: 250 MRLQEP----VYPELGFKPVYRKEGDNLARILVRYDECLQSIELIERIVDELPE 299 Score = 85.0 bits (208), Expect = 8e-15, Method: Composition-based stats. Identities = 36/186 (19%), Positives = 56/186 (30%), Gaps = 29/186 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR + D E V + + + L RIL R E + ++ Sbjct: 236 VGPQARAS-GVPESDMRLQEPVYPELGFKPVYRKEGDN-LARILVRYDECLQSIELIERI 293 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIR-DGKIDLYQC 528 D+L + EAPRG L + + G + Sbjct: 294 VDELPEG------------RHRRELEVNAGHVDNRVEAPRGELVYDMELAPGGVVKRVTI 341 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDG 588 P+ N EA + + + T S DPC+AC+ + D Sbjct: 342 RTPSVPNIR---------VLEAIAPGSP-----SIADAVATYASLDPCVACNERFVVIDE 387 Query: 589 SELISV 594 E + Sbjct: 388 REGKVL 393 >UniRef50_Q979M3 NADH dehydrogenase I chain D n=6 Tax=Thermoplasmatales RepID=Q979M3_THEVO Length = 369 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 38/268 (14%), Positives = 83/268 (30%), Gaps = 27/268 (10%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R +V ++ + V G + R E I + + D + +R+ V + Sbjct: 19 HGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDYVAAMNMEIGY 78 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 + A E + ++ P A IR +M HLV + +L ++ + Sbjct: 79 LEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLD--LGMLTPFFYCFKEREK 136 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 + + + S + + + V L + + P E N++ Sbjct: 137 ILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIK-----QFITEFPKELNMIANLFVK 191 Query: 208 EALDFQR-----EIVKIHAVFGG---------------KNPHPNWIVGGMPCAINIDESG 247 + R + K A+ G + P + + I + G Sbjct: 192 NDIFLSRTKGVGILSKEMAIDYGVTGPMLRASGVEYDVRKAEPYLVYDKVNFDIPVSFKG 251 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVM 275 A + R+ ++ + I + Sbjct: 252 DNLARFLVRIEEMRQSVKIIDQTIQKLP 279 Score = 55.7 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 41/145 (28%), Gaps = 7/145 (4%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+ R G V + + + S G L R + Sbjct: 216 TGPMLRA-----SGVEYDVRKAEPYLVYDKVNFDIPVSFKGDNLARFLVRIEEMRQSVKI 270 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KIDLYQC 528 D+ + L G +K + TE+P+G G + + + Sbjct: 271 IDQTIQKLPAGPYFNQKAKKPLMIRLRGQGEVYARTESPKGEFGVYIVGDGSLRPYRVRV 330 Query: 529 VVPTTWNASPRDPKGQIGAYEAALM 553 PT N S P G A L+ Sbjct: 331 RSPTFKNLSVL-PALAKGQMIADLI 354 >UniRef50_Q6MDR3 NADH-quinone oxidoreductase subunit D n=2 Tax=Parachlamydiaceae RepID=NUOD_PARUW Length = 402 Score = 125 bits (312), Expect = 7e-27, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 88/273 (32%), Gaps = 15/273 (5%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G +R ++ + + V++ G + G+E + R + V+R+ + Sbjct: 27 HPST--HGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTYHQVFTLVDRLDYLSGP 84 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG-MDWIDVLDALKA 140 A A+E + I+VP+ A IR I+L HL+ A ++ V A Sbjct: 85 AEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGTSALELNMSSVFMYSFA 144 Query: 141 DPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY---WGHPQYKLPPE 197 + K +L + +S + + L F +G+ W L Sbjct: 145 EREKILDLFEQVSGARMFPSLWRIGGLAKDLNSDFISHLKEFISGFQKIWKELDRLLTDN 204 Query: 198 ANLMGFAHYLEALD--------FQREIVKIHAV-FGGKNPHPNWIVGGMPCAINIDESGA 248 + +D +++ + + + +P I G Sbjct: 205 FVWCKRLQGVAVIDQEICKQYMCTGPVLRASGISYDIRKAYPYLGYENYNFDIPTHIDGD 264 Query: 249 VGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 A + R+ + I+ I + L Sbjct: 265 SYARYLVRMEEMLQSISIIEQAIARLKPGVVLT 297 Score = 56.1 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 52/183 (28%), Gaps = 32/183 (17%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+ R + A + ++P + R L R E + ++ Sbjct: 228 TGPVLRASGISYDIRKAYPYLGYENYN-FDIPTHIDGDSYARYLVRMEEMLQSISIIEQA 286 Query: 470 FDKLMTNLKNGNLATASTEKWEPATW-----------------PTECRGVGFTEAPRGAL 512 +L + N + + P E+ RG L Sbjct: 287 IARLKPGVVLTNDRKVALPPRKELARSMEAVIHQFKLISEGLHPPVGSVYNCVESARGEL 346 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS 572 GH+ I DG Y+ V SP + + L ++ ++ + S Sbjct: 347 GHYV-ISDGTPKPYRLRV-----RSP--SFSHVEVLKKVLRGHVISD------VVVAIAS 392 Query: 573 FDP 575 DP Sbjct: 393 VDP 395 >UniRef50_B1YB08 NADH dehydrogenase (Quinone) n=5 Tax=Thermoproteaceae RepID=B1YB08_THENV Length = 407 Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 92/305 (30%), Gaps = 19/305 (6%) Query: 14 NAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 G +VV P GHMR V ++ + G + RG+E + + R VE Sbjct: 28 ERGLVVVVGPQHPGSGHMRLFVVLDGDIIKEVVPDPGFVHRGVEKLAENRPYWTLIPLVE 87 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 + + + L A+E A+G++ P A +R M HL L ++ Sbjct: 88 KASIMDSMNITLPITLALEKALGLEPPPRAKYLRTAMAELSRIRTHLYDLALLGI--FLG 145 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQL---GIFRNGYWGHP 190 A A+ + + + V +++ V+ + Sbjct: 146 HSTAFMWGFALMDLYAEVFAKITGARTTVAYPVPGGVRRDVKREHIEAVEKLLRKTEEKL 205 Query: 191 QYKLPPEANLMGFAHYLEALDF--QREIVKIHAVFG----------GKNPHPNWIVGGMP 238 + + LE + + ++ V + P + Sbjct: 206 RDFKTVFLDNPVTKARLEGVGVVDAKRAAELGVVGPFARAAGIDHDVRKAAPYDAYPELD 265 Query: 239 CAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDAL--AIGQFNKPWSEIGTGL 296 + +++G A + R + + + N+ D + A+ N + G G Sbjct: 266 FEVVTEKAGDAMARVLVRWREMYVSMDIVRQALKNLPEGDVIDQALLFKNPEYRREGMGG 325 Query: 297 SDKCV 301 Sbjct: 326 VLGVY 330 Score = 43.7 bits (101), Expect = 0.020, Method: Composition-based stats. Identities = 23/163 (14%), Positives = 39/163 (23%), Gaps = 24/163 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP AR H A + + + R+L R E + ++ Sbjct: 239 VGPFARAAGIDHDVRKAAPYDAYPELDFEVVTEKAGD-AMARVLVRWREMYVSMDIVRQA 297 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPR-GAL------------GHWA 516 L ++ GV P G H Sbjct: 298 LKNLPEGDVIDQALLFKNPEYRR-EGMGGVLGVYTYMYPEPGEYAAVAEAARGATYIHLW 356 Query: 517 AIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAI 559 ++ + V P+ N A A+ ++A Sbjct: 357 TTGTQRVYRMRYVTPSWRNLK---------AMAEAMRGERLAD 390 >UniRef50_Q30PI1 NADH-quinone oxidoreductase subunit D n=45 Tax=Epsilonproteobacteria RepID=NUOD_SULDN Length = 412 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 34/260 (13%), Positives = 84/260 (32%), Gaps = 17/260 (6%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R +++ + ++ G + RG+E + + + +R+ + + + Sbjct: 35 HGQLRLMLHLQQEMIVKAHPDIGYLHRGMEKMAENMIYNEFMPTTDRMDYIASSANNYGF 94 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 A+E IG++VP A +IR ++L HL +D I + R+ Sbjct: 95 ALAVERLIGLEVPRRAKVIRMMLLEINRLMSHLFWL-ATTALD-IGAMTVFLFAFREREY 152 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVE---GGQLGIFRNGYWGH-PQYKLPPEANLMGF 203 L + + + + + ++ QL F + + Y+ + N + Sbjct: 153 LMDIMEGYCGARLTHAAIRIGGVPLDIQDTFITQLKTFLDKLPQNIKDYEDLLDTNRIWL 212 Query: 204 AHYLEALDFQRE-----------IVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAV 252 E +E + + + P + + + + G A Sbjct: 213 MRMEEVGVISKEMALSWGCSGPMLRASGVAWDIRKEEPYELYDEVEFRVPYSDKGDNFAR 272 Query: 253 NMERLNLVQSIITRTADFIN 272 + ++ I+ Sbjct: 273 YRIYMEEMRESAKILYQTID 292 >UniRef50_C1XJB2 NADH dehydrogenase subunit D n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XJB2_MEIRU Length = 415 Score = 124 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 90/287 (31%), Gaps = 25/287 (8%) Query: 2 STQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQ 61 + + +++ T+N + P T G +R V+++ + ++ G + G E ++ Sbjct: 21 APELKSEVMTLNVGPQ----HPST--HGVLRVVVDLSGEQILRLTPHIGYLHTGFEKNME 74 Query: 62 GRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV 121 R + R+ + + H LA ++E +G +VP A IR ++ HLV Sbjct: 75 HRTYTQCITYTPRMDYLHSFSHDLAYALSVEKLVGAQVPPRAQAIRVMLNELSRIASHLV 134 Query: 122 HFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE--GGQL 179 +D+ + A + + L + + + + G++ Sbjct: 135 FLGT-GLLDFGALTPFFYAFREREAVLDLFEWVSGQRFHHNYIRIGGLKEDLPPEFLGEV 193 Query: 180 GIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKI---HAVFGG----------- 225 F Y A ++ ++ GG Sbjct: 194 KKFIAQMPARIDEY--EALFRESPIFYERARGVAVIPPEVAINLSLTGGSLRASGVNYDV 251 Query: 226 KNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFIN 272 + +P + + G V + R+ ++ + + Sbjct: 252 RKAYPYAGYETYDFDVPVLTGGDVFDRMVIRILEMRESVKIIRQAVE 298 Score = 54.1 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/255 (12%), Positives = 64/255 (25%), Gaps = 46/255 (18%) Query: 350 DHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAME 409 H Y P + + + + + L + + +A E Sbjct: 171 FHHNYIRIGGLKEDLPPEFLGEVKKFIAQMPARIDEYEALFRESPIFYERARGVAVIPPE 230 Query: 410 V--------GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQW 461 V G L R + A + ++P+ R++ R E + Sbjct: 231 VAINLSLTGGSL-RASGVNYDVRKAYPYAGYETYD-FDVPVLTGGDVFDRMVIRILEMRE 288 Query: 462 AAGKLQYFFDKLMTNLKNGNLATASTEKWEP--------------------ATWPTECRG 501 + ++ ++L P P Sbjct: 289 SVKIIRQAVERLEALGPGPIRDPNPQISLPPRHLLETSMEAVIYHFKLVTEGFHPALGEV 348 Query: 502 VGFTEAPRGALGHWAAIRDG-KIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIP 560 TE+ RG LG++ G + P+ N + A +MA Sbjct: 349 YVPTESARGELGYYIVSDGGSMPYRVKVRAPSFVNL---------QSLPYACKGVQMAD- 398 Query: 561 EQPLEILRTLHSFDP 575 ++ + S DP Sbjct: 399 -----MVVVIASLDP 408 >UniRef50_UPI0001C42022 energy-converting hydrogenase B subunit N EhbN n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C42022 Length = 391 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 2/125 (1%) Query: 1 MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIIL 60 M + + I + V P +E R + D+ + ++ G RG+E ++ Sbjct: 1 MEEKKAKKQEIIETEIQMGTVHP-AALE-PYRVRFFVEDEIIKDAEITIGVNHRGIERVM 58 Query: 61 QGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL 120 +G A E+ICG+C+ H SV E +G++VPD A IR I+ H HL Sbjct: 59 EGLPVEKANMLTEKICGICSNSHTWNSVRTAEKGLGVEVPDRAVYIRVIVGELERLHSHL 118 Query: 121 VHFYQ 125 ++ Sbjct: 119 LYLGH 123 Score = 82.3 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 57/184 (30%), Gaps = 31/184 (16%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP R + + ++ ++L R E A ++ Sbjct: 226 GPTLRATGVKRDLR---TDMYEYDNFDYDIITQDTCDVQAQLLMRVFEIFEAIKIVRQAI 282 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVV 530 L G + S E + + + E PRG L H AI DG++ Sbjct: 283 RDL----PEGKITDRSWEMIDTDLIES------YIEVPRGTLYHSYAIEDGRVRHCIIRT 332 Query: 531 PTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC---STHVLGDD 587 P+ N GA + A ++ + + + DPC C + V + Sbjct: 333 PSMSNI---------GAMQYACIDNHITDGQ------LCIVQCDPCFTCSDRAIEVYDTN 377 Query: 588 GSEL 591 ++L Sbjct: 378 YNKL 381 >UniRef50_D2U4G0 NADH-quinone oxidoreductase chain C/D n=1 Tax=Arsenophonus nasoniae RepID=D2U4G0_9ENTR Length = 614 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 38/261 (14%), Positives = 82/261 (31%), Gaps = 13/261 (4%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G R + ++ + +I G RG E + + + + +RI + V+ + Sbjct: 243 HGAFRIVLQLDGEEIIDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGGCVNEMPY 302 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLA------GMDWIDVLDALKAD 141 V A+E GI VP+ IR ++ + HL++ + D K Sbjct: 303 VLAVEKLAGIDVPERVMTIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAFTDRQKIY 362 Query: 142 PRKTS----ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPE 197 + + + + Q L++F++ + L Sbjct: 363 DIIEAITGFRMHPAWFRIGGVAHDLPQGWQKLLQEFLDWMPKRLDSYVKAALQNSILKGR 422 Query: 198 ANLMGFAHYLEALDF---QREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNM 254 + + EALD+ + F + P + I +G M Sbjct: 423 SVGVAAYTTKEALDWGVTGAGLRATGLDFDIRKWRPYSGYENFEFEVPIGNNGDCYDRVM 482 Query: 255 ERLNLVQSIITRTADFINNVM 275 ++ ++ + +NN+ Sbjct: 483 LKVEELRQSLHILKQCLNNMP 503 >UniRef50_Q0W6T4 [NiFe]-hydrogenase, large subunit (EchE-like) n=1 Tax=uncultured methanogenic archaeon RC-I RepID=Q0W6T4_UNCMA Length = 486 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 47/290 (16%), Positives = 89/290 (30%), Gaps = 20/290 (6%) Query: 2 STQYETQGYTINNAGRRLVVDPITR--IEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 + + + P IE + ++ + D+ V + G R + + Sbjct: 97 PQSIQASDHITTMPVSTIPYGPYHPAFIESNY-FKMAVEDEVVKKADLKLGFNHRSIIKL 155 Query: 60 LQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 ++ RD ER+CG+C HAL+ A+E+ + VP A+IIR ++ H Sbjct: 156 MERRDYYKDIYLAERVCGLCNAHHALSFCLAVENIGQVTVPKRADIIRTMICEMERIQSH 215 Query: 120 LVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPK--------SSPGYFFDVQ---- 167 L+ L D + L R ++ SL + G D+ Sbjct: 216 LMAIGILG--DLVGYKTMLMQFLRIREDIQDSLELVSGQRVTHGLITLGGVRRDITPAQS 273 Query: 168 NRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQRE---IVKIHAVFG 224 N +K+ + + G+ L +G EA+ Sbjct: 274 NFVKRKLASLKKGVQTLYDEMLSNNVLIGRLKNVGVLPPEEAVRLGAVGPTARGSGQRLD 333 Query: 225 GKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNV 274 + P + I D A ++ I+ + + Sbjct: 334 VRKNTPYAYYENLDWDIVTDNGCDSLARVEVKMREALVSISIVEQCLEKL 383 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 26/186 (13%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP AR T + + + +G S L R+ + EA + ++ Sbjct: 320 AVGPTARGSGQRLDVRKNTPYAYYENLDWDIVTDNGCDS-LARVEVKMREALVSISIVEQ 378 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQ 527 +KL +T E +G TE PRG L + A + + Sbjct: 379 CLEKL---------STVPPEIITKLEELPCAEALGKTEPPRGELLYHVASNGTNTPEFVR 429 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 VPT L + +A + + S DPC +C+ V Sbjct: 430 IRVPT---------FMTAYIMLKLLHGSYVAD------VPAIMGSIDPCYSCTDRVTVHK 474 Query: 588 GSELIS 593 ++++ Sbjct: 475 DAKIVV 480 >UniRef50_Q58433 Uncharacterized protein MJ1027 n=12 Tax=Methanococcales RepID=Y1027_METJA Length = 377 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 45/279 (16%), Positives = 93/279 (33%), Gaps = 22/279 (7%) Query: 19 LVVDPI--TRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 + + P+ T +E H R + I D+ + + G +RG+E+I++G P E+IC Sbjct: 10 IAIGPVHPTMLEPH-RLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKIC 68 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 G+C+ +H +V E I+VP+ A IR I+ H H++ F + + Sbjct: 69 GICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGH--AFEVLGFET 126 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK-----KFVEGGQLGIFRNGYWGHPQ 191 + Q L Y + ++ K + L + + + Sbjct: 127 MAFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEENLK 186 Query: 192 YKLPPEANLMGFAHYLEAL-----DFQREIVKIHAVFGGKNPHP-------NWIVGGMPC 239 L N ++ + +++ + G H + Sbjct: 187 KLLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDNFEF 246 Query: 240 AINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPD 278 + + G V + R + + ++ D Sbjct: 247 EEIVFDDGDVFSRLAVRFYECFESVKIIRQGLKDLPNLD 285 Score = 95.0 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 55/182 (30%), Gaps = 25/182 (13%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP AR + V + R+ R +E + ++ Sbjct: 220 GPTARGSGIHSDMRKMGQVPVYDNFEFEEIVFDDGD-VFSRLAVRFYECFESVKIIRQGL 278 Query: 471 DKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQCV 529 L N + + P + + EA RG + + + +G++ + Sbjct: 279 KDL----PNLDKRIYNPNYELKEFKPIDV----YNEAQRGQVYYSYGLDENGRVRQVKIR 330 Query: 530 VPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDDGS 589 PT N + EA L ++ + S DPC C+ ++ + Sbjct: 331 TPTATNLACM---------EAILPGHHVSD------AELIIASCDPCFTCTDRMIVVKEN 375 Query: 590 EL 591 ++ Sbjct: 376 KI 377 >UniRef50_Q1QP34 NADH-quinone oxidoreductase subunit D 1 n=9 Tax=cellular organisms RepID=NUOD1_NITHX Length = 396 Score = 123 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/289 (13%), Positives = 83/289 (28%), Gaps = 31/289 (10%) Query: 9 GYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDA 68 +TIN + P G +R + ++ + V G + RG E +++ + A Sbjct: 8 NFTINFGPQ----HPAA--HGVLRLVLELDGEVVRRVDPHIGLLHRGTEKLIEHKTYLQA 61 Query: 69 WAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG 128 + +R+ V A A E + I +P +IR + HL++ A Sbjct: 62 LPYFDRLDYVAPMNQEHAFCLATEKLLNITIPKRGQLIRVLYCEIGRLLSHLLNVTTQAM 121 Query: 129 MDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 D + L + + + +F V V + W Sbjct: 122 -DVGALTPPLWGFEEREKLMVFYERASGARMHANYFRVGG-----VHQDLPSKLLDDIWD 175 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAV-------------------FGGKNPH 229 L +L G + + + + + Sbjct: 176 FCDPFLKVCDDLEGLLTENRIFKQRNVGIAEVKLADAWGWGFSGVMVRGSGAAWDLRKAQ 235 Query: 230 PNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPD 278 P + I I + G + R+ ++ + + + +P+ Sbjct: 236 PYECYSELDFDIPIGKHGDCYDRYLVRMEEMRQSVRIMKQCLEKLRLPE 284 >UniRef50_A7I7D0 NADH dehydrogenase (Ubiquinone), 30 kDa subunit n=6 Tax=cellular organisms RepID=A7I7D0_METB6 Length = 526 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 46/327 (14%), Positives = 94/327 (28%), Gaps = 19/327 (5%) Query: 1 MSTQYETQGYTIN-NAGRRLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGL 56 + E T++ + ++ V P+ IE GH R ++ + V + RG+ Sbjct: 156 VPPAEEYPFRTVSGDGVYQVPVGPVHAGIIEPGHFRF--SVIGETVFNLEIRLFYTHRGI 213 Query: 57 EIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWC 116 E + +G+DP E + G + +A AIE GI VPD A IR ++ + Sbjct: 214 EKLAEGKDPAACVRVAEAVSGDESAANATGLCMAIERLSGITVPDRAWHIRTVLCESERI 273 Query: 117 HDHLVHF-YQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE 175 HL L + + + + LS +R Sbjct: 274 CSHLGDLSGMLTDVAFALGASHFAVLREEFFREQEKLSGSRFLRGMILPGGISRDIPVET 333 Query: 176 GGQLGIFRNGYWGHPQYKLPPEA-NLMGFAHYLEALDFQREIVKIHAVFGG--------- 225 + F + + L + + ++ ++ + G Sbjct: 334 LARYREFLARFAKEFRAGLAIVLSTPSVIDRFTQTGIIRKPLLGPLNITGPVARASGSGR 393 Query: 226 --KNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIG 283 + P + + G V A + V ++ I + ++ Sbjct: 394 DVRVDSPYGMYDRFIPVPHPLNDGDVLARFTVKAAEVLDSLSLIEKVIAGMPEGPVISAD 453 Query: 284 QFNKPWSEIGTGLSDKCVLSYGAFPDI 310 + L + + Sbjct: 454 GVGDGAALALVEGPRGENLCWVEIREG 480 Score = 68.0 bits (164), Expect = 1e-09, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 43/131 (32%), Gaps = 13/131 (9%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+AR + G V+S M + G +L R Sbjct: 382 TGPVARASGS---GRDVRVDSPYGMYDRFIPVPHPLND--GDVLARFTVKAAEVLDSLSL 436 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCV 529 +K++ + G + +A + + E PRG W IR+G++ Y+ Sbjct: 437 IEKVIAGMPEGPVISAD--------GVGDGAALALVEGPRGENLCWVEIREGRVFRYKVR 488 Query: 530 VPTTWNASPRD 540 + N + Sbjct: 489 TASYCNWLAIE 499 >UniRef50_A5UXK3 NADH-quinone oxidoreductase subunit D 1 n=20 Tax=cellular organisms RepID=NUOD1_ROSS1 Length = 374 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 36/274 (13%), Positives = 84/274 (30%), Gaps = 17/274 (6%) Query: 18 RLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERIC 76 ++ + P G R V ++ + ++ G + R E + + + + +R+ Sbjct: 8 QINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPYTDRLD 67 Query: 77 GVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLD 136 + + A A+E GI VP A IR +M+ +H L D Sbjct: 68 YFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFL-LNDMGAWQT 126 Query: 137 ALKADPRKTSEL---------AQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGI----FR 183 L R+ ++ A+ + ++ + + + + E Q Sbjct: 127 PLMFGMREREKILDLFEMASGARMMCNYFRFGGVWRDLPPEFIPQLKELMQGLPSFFDEF 186 Query: 184 NGYWGHPQYKLPPEANLMGFAHYLEALD-FQREIVKIHAV-FGGKNPHPNWIVGGMPCAI 241 + L N+ + +++ + + + P + + I Sbjct: 187 ERLLKENEILLSRTINVGVLPKEVAVSYSVTGPVLRASGIPYDVRRAEPYSVYDELDFDI 246 Query: 242 NIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 I G V + R+ ++ I + Sbjct: 247 PIGSVGDVYDRFLIRIEEMRQSYRILQQVIERLP 280 Score = 62.2 bits (149), Expect = 5e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 51/170 (30%), Gaps = 25/170 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSA----LNLPLSGIQSTLGRILCRAHEAQWAAGK 465 GP+ R G V + ++P+ + R L R E + + Sbjct: 217 TGPVLRA-----SGIPYDVRRAEPYSVYDELDFDIPIGSVGDVYDRFLIRIEEMRQSYRI 271 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKID 524 LQ ++L + + A P E+P+G LG + + Sbjct: 272 LQQVIERLPDTTGGHINPAMANIGKQKALRPPPGDAYARIESPKGELGFYLVSDGSERPY 331 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFD 574 Y+ P+ N +P K+A ++ L S D Sbjct: 332 RYKVRAPSFINLTPLGD---------MCRGHKVAD------VVVILGSID 366 >UniRef50_UPI000186E11F NADH-ubiquinone oxidoreductase 49 kDa subunit, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E11F Length = 369 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 28/178 (15%), Positives = 60/178 (33%), Gaps = 8/178 (4%) Query: 5 YETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRD 64 E Q +N + P G +R + + + V G + RG E +++ + Sbjct: 82 TEIQNVVLNFGPQ----HPAA--HGVLRLILELRGERVAKCDPHIGLLHRGTEKLIEYKT 135 Query: 65 PRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFY 124 A + +R+ V + A+E + I+VP A IR + +HL+ Sbjct: 136 YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIEVPLRAKYIRTMFAELTRILNHLMGIG 195 Query: 125 QLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIF 182 +D + L + +L + + + + + + G + Sbjct: 196 T-HILD-VGALTPFFWFFEEREKLMEFYERVSGARMHAAYIRPGGVSQDLPLGLMDDI 251 >UniRef50_B8J7E4 NADH-ubiquinone oxidoreductase chain 49kDa n=14 Tax=Bacteria RepID=B8J7E4_ANAD2 Length = 521 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 87/275 (31%), Gaps = 22/275 (8%) Query: 19 LVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R + + + V + G RG+E +L+G R + A E I Sbjct: 167 VAVGPVHAGIIEPGHFRFQCH--GERVFHLEIVLGYQHRGVERLLRGGPDRRSMALAESI 224 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 G H LA A+E G+ A +R I L +H+ LAG + L Sbjct: 225 AGDTAVGHGLAYAKAVESLAGVAPTARAMSLRGIGLELERIANHVGDLGALAGD--VGFL 282 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE---GGQLGIFRNGYWGHPQY 192 +E +++ + G +K ++ L W + Sbjct: 283 PTASYCGALRAEFLNAVAEICGNRFGRSLVCPGGVKHDLDAEAARALAARVRAAWEKTRR 342 Query: 193 KLPPEANLMGFAHYLE-----------ALDFQREIVKIHAVF-GGKNPHPNWIVGGMPCA 240 E AL + V + H I A Sbjct: 343 AASLMFESPSVRARFEGTGTVPTALAQALGMVGPAARASGVDRDVRRDHAFGIYRFSHVA 402 Query: 241 INIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 + E+G V A + RL + + D + + Sbjct: 403 VTTAENGDVLARALIRLLEAERSVEFVLDQLERLP 437 Score = 51.8 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 39/128 (30%), Gaps = 12/128 (9%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP AR G V ++ + G +L RA A + Sbjct: 373 MVGPAARA-----SGVDRDVRRDHAFGIYRFSHVAVTTAENGDVLARALIRLLEAERSVE 427 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGH-WAAIRDGKIDLYQ 527 F + L G TA A V E RG + H G+++ Y+ Sbjct: 428 FVLDQLERLPGGPSRTAPGPLAPGALV------VSMVEGWRGEIAHVAVTDAQGRLEAYK 481 Query: 528 CVVPTTWN 535 P+ N Sbjct: 482 VKDPSFHN 489 >UniRef50_Q64DY8 F420H2-quinone oxidoreductase 45 kD subunit n=8 Tax=Archaea RepID=Q64DY8_9ARCH Length = 788 Score = 121 bits (303), Expect = 7e-26, Method: Composition-based stats. Identities = 47/312 (15%), Positives = 91/312 (29%), Gaps = 21/312 (6%) Query: 21 VDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCT 80 + P GH+R + + + G + R +E I + R ER Sbjct: 412 IGPHHSGSGHLRWVMRMKGDIIKDVIPDPGYVHRSMEKIAENRLYIQNVPLTERPNISDP 471 Query: 81 GVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAG-MDWIDVLDALK 139 L V AIE+A+GI+VP+ A IR IM FY + ++ Sbjct: 472 INMNLGYVRAIENALGIEVPERAKYIRTIMAELSRIG---AFFYDMGIFPLFMGHSTGFM 528 Query: 140 ADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVE---GGQLGIFRNGYWGH-PQYKLP 195 + + + S F V +++ + + F +Y+ Sbjct: 529 YSFAIREMVLELMVRMTGSRCTPSFIVPGGIRRDIPDDVLDRTRKFTTAIHKRLKKYENI 588 Query: 196 PEANLMGFAHYLEALDFQREIVKIHAVFGG-----------KNPHPNWIVGGMPCAINID 244 N + + E RE + G + P + + Sbjct: 589 FVYNPVLISRMKEVGVLTREEAIRCGIVGPFLRASGVEYDVRKAEPYEVYDKLDWEATTG 648 Query: 245 ESGAVGAVNMERLNLVQSIITRTADFINNV--MIPDALAIGQFNKPWSEIGTGLSDKCVL 302 ++G RL ++ + ++ V M + + + E + Sbjct: 649 DAGDCLGRIFGRLEEMKQSVEIVRQAVDAVQEMPRGGVISEEILGDYKEASDDIRGYLYN 708 Query: 303 SYGAFPDIANDF 314 YG ++ Sbjct: 709 VYGDLVLPKGEW 720 Score = 46.8 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 44/144 (30%), Gaps = 19/144 (13%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP R + A V + LGRI R E + + ++ Sbjct: 616 VGPFLRASGVEYDVRKAEPYEVYDKLD-WEATTGDAGDCLGRIFGRLEEMKQSVEIVRQA 674 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWP--------------TECRGVGFTEAPRGALGHW 515 D + + G ++ ++ A+ + TEA RG + + Sbjct: 675 VDAVQEMPRGGVISEEILGDYKEASDDIRGYLYNVYGDLVLPKGEWTSVTEAARGTVLYS 734 Query: 516 AAIRDGK---IDLYQCVVPTTWNA 536 I DG+ + + P N Sbjct: 735 I-ISDGESNVPYRVRIITPCWMNL 757 >UniRef50_O75306 NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial n=570 Tax=cellular organisms RepID=NDUS2_HUMAN Length = 463 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 35/265 (13%), Positives = 86/265 (32%), Gaps = 21/265 (7%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V G + RG E +++ + A + +R+ V + A Sbjct: 92 HGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAY 151 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV----HFYQLAGM-----DWIDVLDAL 138 A+E + I+ P A IR + +H++ H L M + + Sbjct: 152 SLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMF 211 Query: 139 KADPRKTSELAQSLSSWPKSSP-----GYFFDVQNRLKKF---VEGGQLGIFRNGYWGHP 190 + R + + P G D+ K F ++ + + N W + Sbjct: 212 EFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNR 271 Query: 191 QYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVG 250 + + + + ++ + + P + + + + G Sbjct: 272 TIDIGVVTAEEALNYGFSGVMLRGSGIQ----WDLRKTQPYDVYDQVEFDVPVGSRGDCY 327 Query: 251 AVNMERLNLVQSIITRTADFINNVM 275 + R+ ++ + A +N + Sbjct: 328 DRYLCRVEEMRQSLRIIAQCLNKMP 352 >UniRef50_A7H9V5 NADH-quinone oxidoreductase subunit D 2 n=8 Tax=Myxococcales RepID=NUOD2_ANADF Length = 431 Score = 121 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 93/288 (32%), Gaps = 15/288 (5%) Query: 12 INNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + + + + P + G R V ++ + + + + G + RG E + + Sbjct: 43 LASKLMTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCENVTWTQCFP 102 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 + +R+ V + ++ + A+E + VP+ A +R + DHL +A Sbjct: 103 YTDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTLVGAMAMEL 162 Query: 131 --WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLK--KFVEGGQLGIFRNGY 186 L A++A LA+ + S+ G V + + GY Sbjct: 163 GAMTVFLYAIEARDIIYDRLAELCGARLTSNYGRIGGVARDTPDGWIEKTEKTLDRVKGY 222 Query: 187 WGHPQYKLPP------EANLMGFAHYLEALD--FQREIVKIHAV-FGGKNPHPNWIVGGM 237 + G +A++ F ++ + + P + + Sbjct: 223 VDEIDQLVSRNRIFIDRTRGTGVVPRADAIELGFTGPCLRASGEPYDLRKAAPYLVYDRI 282 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQF 285 I + +G R+ ++ R M P +A+ F Sbjct: 283 DFDIPVGTNGDNFDRFQMRMEEMRQS-DRIIRQCFAQMEPGEIAVQDF 329 Score = 44.1 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 20/164 (12%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP R + A V + + + R R E + + ++ Sbjct: 257 TGPCLRASGEPYDLRKAAPYLVYDRIDFDIPVGTNGDN-FDRFQMRMEEMRQSDRIIRQC 315 Query: 470 FDKLMTN-LKNGNLATASTEKWEP----------------ATWPTECRGVGFTEAPRGAL 512 F ++ + + K G+TEA G L Sbjct: 316 FAQMEPGEIAVQDFRYVLPPKPLVYGTIEGLMAHFKIIMEGIQVPAGEAYGYTEAANGEL 375 Query: 513 GHWAAIR-DGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNT 555 G + G+ P W P +G+ + L+ T Sbjct: 376 GFYVVSDGGGRPYKLGLRAP-GWPMLAALPFMSVGSLLSDLIPT 418 >UniRef50_UPI0001C31275 NADH dehydrogenase I, D subunit n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31275 Length = 413 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 59/177 (33%), Gaps = 2/177 (1%) Query: 1 MSTQYETQGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEII 59 +S E G + + + P G +R + + + V G + G+E Sbjct: 14 ISYSAEPAGMGLEQELMTVNMGPHHPSTHGVLRLILTLEGEMVRDVKPIIGYVHTGIEKT 73 Query: 60 LQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDH 119 + + VER+ + +A A A+E + + VP A +R I + H Sbjct: 74 AEQKAYWKVIPVVERMDYLSYYFNAYAFCGAVEKLLEVDVPKRAQYLRVIHMELNRIMSH 133 Query: 120 LVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEG 176 LV + +D + + L S + +F V ++ G Sbjct: 134 LVWLGT-SCIDLGAIGVWWYCFREREQVLDLFEMSSGQRMHTRYFQVGGVIEDIPRG 189 Score = 47.6 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/149 (14%), Positives = 31/149 (20%), Gaps = 27/149 (18%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GPL R A + + R R E + Sbjct: 239 TGPLLRATGNPWDLRKAAPYCSYDDFRFRIPVGTEGDN-YDRYRVRHAEILESC----AI 293 Query: 470 FDKLMTNLKNGNLATASTEKWEP---------------------ATWPTECRGVGFTEAP 508 D+ + L G T + P E+P Sbjct: 294 IDQAIDGLPEGPFITEDRKVALPPRHELATSMEALIHHFKLVTEGFRVPPGEVYHPIESP 353 Query: 509 RGALGHWAAIRD-GKIDLYQCVVPTTWNA 536 RG LG + K P+ N Sbjct: 354 RGELGCFVRSDGSSKPARVHMRDPSFVNL 382 >UniRef50_A9BJL6 NADH dehydrogenase (Quinone) n=3 Tax=Thermotogaceae RepID=A9BJL6_PETMO Length = 369 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 99/281 (35%), Gaps = 8/281 (2%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G+ + ++ ++ G + RG E +++ R + A + RIC ++ + Sbjct: 16 HGNFSVHMYVDGDTIVRARPMPGMLHRGFEKLMERRLWMNNLALIPRICVPEPDINEMVY 75 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 AIE+ GI+VP+ A+ IR I+L +HL+ + G + + Sbjct: 76 AMAIEELTGIEVPEKAHWIRMIILELARIANHLMSLGGIGGP--VGLYTGPNWGLADRDL 133 Query: 148 LAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYL 207 + + + + V ++K + + ++ + + + +LP +L+ Sbjct: 134 ILDIFEEITGARIYHMYIVPGGVRKDLREETIEKIKS-FLDYLENRLPEYEDLILKNSLF 192 Query: 208 EALDFQREIV--KIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIIT 265 + + ++ ++ G VG A +I + + + + + Sbjct: 193 QRRTKDKLLLPAEVVWELGVTGIGMRSAVGE---AYDIRKVDPYARYDQVEFYVPTANYS 249 Query: 266 RTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGA 306 + + +I + ++ +S G+ Sbjct: 250 DGYTRVYFKYLETYQSIKIIRQVLEKMPQKGKVWNKISNGS 290 >UniRef50_C0SF51 NADH-ubiquinone oxidoreductase 49 kDa subunit n=1 Tax=Paracoccidioides brasiliensis Pb03 RepID=C0SF51_PARBP Length = 447 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 34/235 (14%), Positives = 76/235 (32%), Gaps = 8/235 (3%) Query: 10 YTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 YT+N + P G +R + +N + ++ G + RG E +++ + A Sbjct: 96 YTVNFGPQ----HPAA--HGVLRLILELNGEEIVRADPHVGLLHRGTEKLIEYKTYMQAL 149 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 + +R+ V + A+E + I++P+ A IR + +HL+ M Sbjct: 150 PYFDRLDYVSMMTNEQCFSLAVEKLLNIEIPERAKWIRTMFGEITRILNHLMSV-LSHAM 208 Query: 130 DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGH 189 D + L + + + + G I++ Sbjct: 209 DVGALTPFLWGFEEREKLMEFYERVSGARLHAAYIRPGGVHQDIPLGLLDDIYQWATHSA 268 Query: 190 PQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNW-IVGGMPCAINI 243 + + LE + +R + + ++ + GM N+ Sbjct: 269 TASTKLKNCSPKIVSGKLEPRNRRRFLPQRLSITALAESCSVAPLFHGMSANPNL 323 >UniRef50_A3DM94 Membrane bound protein complex subunit mbxL n=2 Tax=Desulfurococcaceae RepID=A3DM94_STAMF Length = 375 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 82/269 (30%), Gaps = 21/269 (7%) Query: 29 GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASV 88 G++ ++ ++ + V+ + G + RG E +++ R RIC L Sbjct: 20 GNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVMSARICVEDPDHIELTYT 79 Query: 89 YAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSEL 148 +A+E GI+ P+ A +R I+ HL+ AG I A E+ Sbjct: 80 HAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGP--IAARYATSWAIAAREEI 137 Query: 149 AQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ--------------LGIFRNGYWGHPQYKL 194 + + + ++ + + R+G++ HP Sbjct: 138 LKWFDYVSGHRIYHHYIFPGGVRWDIPSDFKEKTLKVLKVIKPLIDDIRDGFFYHP--IF 195 Query: 195 PPEANLMGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESGAVGA 251 A MG +A+ + F + G + I E G Sbjct: 196 EKRARDMGRLKPGDAIRLGATGPTLRGSGVKFDLRKVLKYDAYGEIDFEIPSGEYGDSYD 255 Query: 252 VNMERLNLVQSIITRTADFINNVMIPDAL 280 + RL + + + + Sbjct: 256 RALVRLREMYISMEIIRQAVEKMPTEGPY 284 Score = 61.5 bits (147), Expect = 9e-08, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 47/169 (27%), Gaps = 15/169 (8%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 GP R + S R L R E + ++ Sbjct: 215 ATGPTLRGSGVKFDLRKVLKYDAYGEIDFEIPSGEYGDS-YDRALVRLREMYISMEIIRQ 273 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGA-LGHWAAIRDGKIDLYQ 527 +K+ PAT P G+G E+ RG L H G + Sbjct: 274 AVEKM--------PTEGPYRYRLPATIP-AGEGIGRVESARGEFLAHILQRPPGARRYSK 324 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 + P + + N ++ I + P+ + SFDPC Sbjct: 325 PLSPYRIKFRGPTMAHLTTVLKHIVHNEEITIADLPV----LIGSFDPC 369 >UniRef50_B9L625 NADH-ubiquinone oxidoreductase n=3 Tax=Epsilonproteobacteria RepID=B9L625_NAUPA Length = 549 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 96/272 (35%), Gaps = 25/272 (9%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P G +R +V N +N+ G ++R LE + + +D VERIC + Sbjct: 186 GPTHPASGPIRLKVYTNGENIEKIEPDIGYVWRALEHLAERKDFIGTIVAVERICFMDNP 245 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHL-----------VHFYQLAGMD 130 + A+E+ G ++ + A +R I+ T HL +H + + +D Sbjct: 246 NPMICYSQAVEEIAGKEITEFAKYMRVILGETGRIASHLISLGGFFGTMGLHTFMMWCLD 305 Query: 131 ----WIDVLDALKADPRKTSELAQSLSSWPKSSP-GYFFDVQNRLKKF--VEGGQLGIFR 183 ++DVL+ T+ + +P + +F + +KKF + IF Sbjct: 306 IREYFLDVLEDYSGARIATACVEPGGVRYPLNDYKAWFEGINKAIKKFEDTKADITDIFM 365 Query: 184 NGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIVGGMPCAINI 243 + + K L A Y A R A + P + Sbjct: 366 KNPLMNTRAKGNGVFTLDDVAEYYLAGPIARAS---GAKIDVRIDEPYAAYDKLEMEYAT 422 Query: 244 DESGAVGAVNMERLNLVQSIITRTADFINNVM 275 E+G +RL ++ + + D I M Sbjct: 423 CENGD----ARDRLYIIFKELEQAMDLIKQAM 450 Score = 51.4 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 23/147 (15%), Positives = 36/147 (24%), Gaps = 12/147 (8%) Query: 406 NAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGK 465 GP+AR G V + + L + G R + + Sbjct: 387 EYYLAGPIARA-----SGAKIDVRIDEPYAAYDKLEMEYATCENGDARDRLYIIFKELEQ 441 Query: 466 LQYFFDKLMTNLKNGNLATASTEK----WEPATWPTECRGVGFTEAPRGA-LGHWAAIRD 520 + M ++ G A K + V E RG L H Sbjct: 442 AMDLIKQAMAKIEEGIEAGEMDPKKDHLVKMPKRMPAGEAVSRIEWARGEILMHLVTQEK 501 Query: 521 GK-IDLYQCVVPTTWNASPRDPKGQIG 546 + P+ N + K G Sbjct: 502 STSPYRLKIKAPSV-NHTMMLDKLLRG 527 >UniRef50_A0RMD1 NADH-quinone oxidoreductase subunit C/D n=5 Tax=Bacteria RepID=NUOCD_CAMFF Length = 561 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 41/353 (11%), Positives = 97/353 (27%), Gaps = 16/353 (4%) Query: 8 QGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPR 66 + L + P G +R V ++ + +I+ G + RG E + Sbjct: 169 ENDEFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYA 228 Query: 67 DAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 + +R+ ++ + A+E+A+G+ +PD +R I+ DH V + Sbjct: 229 QIIPYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAM 288 Query: 127 A--GMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 + R + L++ + +S + N + L ++ Sbjct: 289 FVDMGGLTNYWYLYNPRERIYNFLSKLTGARFTNSFARIGGMANDFYDGWKEELLAHLKD 348 Query: 185 GYWGHPQYKLPPEANLMGFAHYLEALDFQR-----------EIVKIHAVFGGKNPHPNWI 233 G + E N + + F + P + Sbjct: 349 VEKGVDDTMILIEKNRIFLDRVQNICKINANDALSYGFSGPNLRASGVSFDLRKDKPYYY 408 Query: 234 VGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIG 293 ++ + G + R ++ I+ I + ++ + Sbjct: 409 YDSFDFSVPVGSEGDIYDRMFVRFFEMRESISIIRQAIKLIPEGKI-SVDDKDVFLPSKD 467 Query: 294 TGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQ 346 S+ L F I + + + +P + Sbjct: 468 QVYSNIESLI-NHFKLIFDGIKLPNGHFYSASEGANGELGFFIFSNSEPNPYR 519 >UniRef50_C1D0H4 Putative NADH dehydrogenase (Quinone), subunit D (NADH-quinone oxidoreductase, subunit D) n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0H4_DEIDV Length = 412 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 74/272 (27%), Gaps = 14/272 (5%) Query: 12 INNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 ++ L V P G +R V+++ + V G + G E + R + Sbjct: 24 MHTEVMSLNVGPQHPSTHGVLRLVVDMDGEYVRKVVPHMGYLHTGFEKTFEHRTYQQGVT 83 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHF--YQLAG 128 + R + H LA V ++E + +VPD A++IR I+ H HLV L Sbjct: 84 YAPRTDYLHCFGHELAYVLSVEKLMQAQVPDRASMIRVILHELGRIHSHLVFVGTGLLDL 143 Query: 129 MDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWG 188 A + ++ + + + G G Sbjct: 144 GALTPFFYAFREKESCVDLFEEATGYRMNQGFFRVGGLSRDVPEDWPGHVAQFLDQMERG 203 Query: 189 HPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGG-----------KNPHPNWIVGGM 237 +Y N + ++ + G + HP Sbjct: 204 VDEYTNLFANNPIFLDRARGVGVIPTDVALDLGLTGPNLRASGVPLDVRKAHPYCGYEAY 263 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTAD 269 + G A RL I Sbjct: 264 DFNVISSTDGDSLARFTMRLLEFSESIKIIRQ 295 Score = 54.5 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 46/188 (24%), Gaps = 42/188 (22%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST----LGRILCRAHEAQWAAGK 465 GP R G V + I ST L R R E + Sbjct: 238 TGPNLRA-----SGVPLDVRKAHPYCGYEAYDFNVISSTDGDSLARFTMRLLEFSESIKI 292 Query: 466 LQYFFDKLMTNLKNGNLATASTEK-----------------WEPATWPTECRGVGFTEAP 508 ++ +L L S P E Sbjct: 293 IRQALARLKPGLIKDPNRKISLPPRHELETSMEAVIHHFKLVTEGFHPPTGEVYVPVEGA 352 Query: 509 RGALGHWAAIRDGKI-DLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEIL 567 RG +G++ G + + P+ N A E A + + A ++ Sbjct: 353 RGEVGYYIVSDGGSVPYRVKIRAPSFVNL---------QALEYACVGAQFAD------LI 397 Query: 568 RTLHSFDP 575 L + DP Sbjct: 398 TILATIDP 405 >UniRef50_B3DZF5 Formate hydrogenlyase subunit 5 n=8 Tax=Bacteria RepID=B3DZF5_METI4 Length = 535 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 22/276 (7%) Query: 18 RLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVER 74 ++ V P+ IE GH R ++ + V+ G +G+E + G R Sbjct: 181 QVPVGPVHAGIIEPGHFRFTMS--GEIVVRMEERLGYTHKGIESLFSGASIDKGMEIAGR 238 Query: 75 ICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 I G T +A A+E+A+GI P A IR +M +H + Sbjct: 239 ISGDSTVAYAYGYALAVEEALGISPPPRAEWIRALMAELERMANHFGDVGAICNDAAF-- 296 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 L ++ + S V +K+ + L R + + Sbjct: 297 PRILSRCALLREKILRCAQSCFGHRLMRDKIVVGGVKEDLNAEGLSRIRELLETIKEEVV 356 Query: 195 -PPEANLMGFAHYLEALDFQREIVKIHAVFGG--------------KNPHPNWIVGGMPC 239 + + + ++ +FG + + Sbjct: 357 CLKDFYDSKNSLQDRTVGTGVLDRRLAELFGAGGFIGRASGRNFDSRKAFAYKPYDSLSF 416 Query: 240 AINIDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 + + E G V A R+ ++ + + + Sbjct: 417 EVPVLEDGDVNARVWIRILEIEQSVKLLEQILEGMP 452 Score = 53.0 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 12/132 (9%) Query: 415 RTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLM 474 R A +S L R+ R E + + ++++ Sbjct: 394 RASGRNFDSRKAFAYKPYDSLSFEVPVLEDGD-VNARVWIRILEIEQSV----KLLEQIL 448 Query: 475 TNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTW 534 + G++ E +G+ E+ RG + W I +GKI P+ W Sbjct: 449 EGMPPGSICA------ERIGGEGSGKGLSVVESFRGDILTWIEIYNGKIIRCHPRDPS-W 501 Query: 535 NASPRDPKGQIG 546 P K +G Sbjct: 502 FQWPLLEKVIVG 513 >UniRef50_B3E6C1 NADH-ubiquinone oxidoreductase chain 49kDa n=2 Tax=Deltaproteobacteria RepID=B3E6C1_GEOLS Length = 506 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 55/353 (15%), Positives = 100/353 (28%), Gaps = 23/353 (6%) Query: 9 GYTINNAGRRLVVDPITR--IE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 + V P+ IE GH R + + + V +S G RG+E +L Sbjct: 142 YRVEGEEIHEVAVGPVHAGVIEPGHFRFQCH--GEQVFHLEISLGYQHRGIEQLLLNGPH 199 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 +E I G + H LA +E P A+ +R I L +H Sbjct: 200 PQTLRQMEAIAGDTSIGHGLAYCMVLESLSKSHPPATAHALRGIALELERLANHTGDLGA 259 Query: 126 LAGM---------------DWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRL 170 +AG D+++ + A R L + + ++QNRL Sbjct: 260 IAGDVGYLPTASFCGRIRGDFLN-MSAFICGSRFGRGLLKPGGTVFGLDQAQREELQNRL 318 Query: 171 KKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHP 230 I +L ++ +E ++ +P Sbjct: 319 ATGRAELTSAIELLWNTPSVMSRLEG-TGVVSAESAVEMGLVGPAARACGLKRDVRSDYP 377 Query: 231 NWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA-IGQFNKPW 289 I I G V + + R Q + + + + A + Sbjct: 378 FGIYRMAQVPIATAHHGDVCSRSSVRWEECQKSLDFCVEQLRQLPKGAHAAELKPLQGDQ 437 Query: 290 SEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDP 342 + + + + A D A F + + P G + + D Sbjct: 438 LTVALTEGWRGEICHLAITDSAGRFRQYKITDPSFHNWQGLAMALRNEQISDF 490 >UniRef50_D1Z1Z0 Putative [NiFe]-hydrogenase large subunit n=1 Tax=Methanocella paludicola SANAE RepID=D1Z1Z0_METPS Length = 530 Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 43/291 (14%), Positives = 82/291 (28%), Gaps = 21/291 (7%) Query: 2 STQYETQGYTINNAGRR-LVVDPITR--IEGHMRCEVNINDQNVITNAVSCGTMFRGLEI 58 + T I + P IE + ++++ D+ V + G R + Sbjct: 129 APPATTPRDNIVTLPVTAIPYGPYHPAFIESNF-LKMSVEDEVVKKVDLKLGFNHRSVIK 187 Query: 59 ILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHD 118 +++ RD ERICG C HAL+ ++ED I +P A + R ++ Sbjct: 188 LMERRDYYKDIFLAERICGFCNSHHALSFARSVEDIASIDIPPKAKLARTLLCEMERIQS 247 Query: 119 HLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ 178 HL+ + D L R E+ SL + +++ + Q Sbjct: 248 HLLAVGLIG--DLTGFRTMLMHSLRVREEMQDSLEVVSGQRVTHGLITIGGIRRDITPAQ 305 Query: 179 LGIFRNGYWGHPQY------------KLPPEANLMGFAHYLEALDFQRE---IVKIHAVF 223 N + L +G ++ Sbjct: 306 ADFILNKLRIMKKSVPEFFDQALSNDVLVGRLENVGVLSLENSVKLGAVGPTARGSGLRI 365 Query: 224 GGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNV 274 + P + I + G A ++ V + + Sbjct: 366 DVRKNSPYEAYEDVDWDIVTENGGDSLARMKVKMREVLMSMHIAEQCCEKI 416 Score = 74.9 bits (182), Expect = 8e-12, Method: Composition-based stats. Identities = 32/190 (16%), Positives = 53/190 (27%), Gaps = 26/190 (13%) Query: 409 EVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQY 468 VGP AR + + + +G S L R + Sbjct: 353 AVGPTARGSGLRIDVRKNSPYEAYEDVDWDIVTENGGDS-----LARMKVKMREVLMSMH 407 Query: 469 FFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQ 527 ++ +K A+ P + +E PRG L + A D + Sbjct: 408 IAEQCCEKIKTAPAGLATKVNELPC-----GEAISKSEPPRGELLYHVASNGTNTPDFVR 462 Query: 528 CVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVLGDD 587 VPT A + + + + S DPC +C+ V Sbjct: 463 IRVPTFLTAH---------IMLRLIQGGWVGD------VPAIIGSIDPCFSCTDRVAIIK 507 Query: 588 GSELISVQVR 597 +E V +R Sbjct: 508 NNEKSVVDMR 517 >UniRef50_C1XWY7 Ni,Fe-hydrogenase III large subunit n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XWY7_9DEIN Length = 426 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 8/147 (5%) Query: 19 LVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++ + ++ V G RG+E + QG+ A ER Sbjct: 73 VPVGPVHAGIIEPGHFRF--SVLGERILHLEVRLGYQHRGVEQLFQGKSLEQALLLAER- 129 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 G HALA A+E A+G++VP A +R ++L HL H L I Sbjct: 130 AGGEPVAHALAFCQAVEAALGVEVPPRAYRLRRVLLELERLFGHLGHLAGLFTD--IGYA 187 Query: 136 DALKADPRKTSELAQSLSSWPKSSPGY 162 A + + L L G Sbjct: 188 YAATQVGKVRALLQGQLERLTGHRYGR 214 Score = 75.7 bits (184), Expect = 5e-12, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 57/182 (31%), Gaps = 30/182 (16%) Query: 399 KAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHE 458 RW G VGP AR AL + + + G +L RA Sbjct: 271 AQARWLGL---VGPAARACGLGRDLRQD---------DALYQTFTPVVRSGGDVLARAQV 318 Query: 459 AQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI 518 + + D+ + L G +A T P EA RG L +W + Sbjct: 319 YAEELRQGFVYLDRFLGALPQGEVANGPTTP-RVDPVPATAEAYSRVEAGRGELFYWVRL 377 Query: 519 RDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLA 578 R +++ + V P+ N A E A+ + SFD L+ Sbjct: 378 RGNRVERVKIVDPSFKNWR---------ALELAVRGMGLPD------FPIINKSFD--LS 420 Query: 579 CS 580 + Sbjct: 421 YA 422 >UniRef50_B3TC54 Putative Respiratory-chain NADH dehydrogenase, 49 Kd subunit n=1 Tax=uncultured marine microorganism HF4000_APKG10H11 RepID=B3TC54_9ZZZZ Length = 363 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 43/289 (14%), Positives = 78/289 (26%), Gaps = 24/289 (8%) Query: 12 INNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAF 71 + L P + GH R + I+ + + G RG+E +L+ R Sbjct: 1 MTEGLVTLNWGPQHPVTGHFRMIMTIDGDLCVGAEPTIGYTHRGIEKLLENRQFLVGIPM 60 Query: 72 VERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDW 131 +ER T +L+ A+E + + P A +R I+ HL Y LA Sbjct: 61 IERFNMTDTAPMSLSYTKAVESLMDFEAPPRAQYLRTIISEICRLSSHL---YNLALYTV 117 Query: 132 IDVLDALKADPRKTSELAQSLSSWPKS---------SPGYFFDVQNRLKKFVEGGQLGIF 182 + E L G + D+ Sbjct: 118 ALGMYTPFMWAIGDREHFLKLGEILSGVRLAYNYPIPGGVYKDMPPDFPHQATKTIKYFR 177 Query: 183 RNGYWGHPQYKLPPEA-----NLMGFAHYLEALDFQREIVKIHAVFGG-----KNPHPNW 232 + ++ A +G EAL + + G + P Sbjct: 178 NRLLKDYKKFIYDTTAVKSRGEDVGIMSKEEALKWG--VTGPVLRASGVKKDMRKVEPYG 235 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + + G A + R ++ + I ++ D Sbjct: 236 AYNEVDFDVITKNEGDSHARMLVRYEEMEQSLNILEQCIKDIPAGDYFT 284 Score = 47.2 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 34/118 (28%), Gaps = 11/118 (9%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 GP+ R G + V+ + + I G R + Sbjct: 215 TGPVLRA-----SGVKKDMRKVEPYGAYNEVDFDVITKNEGDSHARMLVRYEEMEQSLNI 269 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQ 527 ++ + ++ G+ T EA RG +G + ++ + Y+ Sbjct: 270 LEQCIKDIPAGDYFTKVRPAV------PAGETFTRVEAARGEVGVYLFNKETRNMPYR 321 >UniRef50_A5FKI7 NADH-quinone oxidoreductase subunit D n=17 Tax=Bacteria RepID=NUOD_FLAJ1 Length = 412 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 39/299 (13%), Positives = 88/299 (29%), Gaps = 21/299 (7%) Query: 22 DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTG 81 P T G + + ++ + ++ + G + R E I + R +R+ + Sbjct: 36 HPAT--HGIFQNILLMDGERILEAEPTIGYIHRAFEKIAENRPFYQITPLTDRMNYCSSP 93 Query: 82 VHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLV--------------HFYQLA 127 ++ + +E +GI+VP A +R I++ DH++ Y Sbjct: 94 INNMGWWMTLEKLLGIEVPKRAQYLRVIVMELARITDHIICNSILGVDTGAYTGFLYVFQ 153 Query: 128 GMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYW 187 + I + R T+ + + SP F + L++F + + Sbjct: 154 FREKIYEIYEEICGARLTTNMGRIGGFERDWSPEAFRKLDKFLEEFPPAWKE---FENLF 210 Query: 188 GHPQYKLPPEANLMGFAHYLEALD--FQREIVKIHAVFGGKNPHPNWIVGGMPCAINIDE 245 + L N+ G + + + HP + + + Sbjct: 211 ERNRIFLDRTVNVGGITAEKAMAYGFTGPNLRAAGVDYDVRVAHPYSSYEDFDFIVPVGK 270 Query: 246 SGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSY 304 SG R V ++ + + + + + L Y Sbjct: 271 SGDTYDRFCVRNAEVWESLSIIRQALEKMPAGNEYHAEVPDYYLPPKEDVYNSMESLIY 329 >UniRef50_Q2NED9 EhbN n=5 Tax=Methanobacteriaceae RepID=Q2NED9_METST Length = 383 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 47/96 (48%) Query: 30 HMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVY 89 R + + D+ V ++ G RG+E I++G A A E++CG+C+ H S Sbjct: 35 PYRVRLFVEDEIVKDAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCR 94 Query: 90 AIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 E A+GI++P+ A +R + H H+++ Sbjct: 95 VGEGALGIEIPERAVYLRVLAEELERLHSHMLYLGH 130 Score = 81.9 bits (200), Expect = 7e-14, Method: Composition-based stats. Identities = 54/397 (13%), Positives = 104/397 (26%), Gaps = 70/397 (17%) Query: 191 QYKLPPEANLMGFAHYLEALDFQR---EIVKIHAVFGGKNPHPNWIVGGMPCAINIDESG 247 ++ N G +E L ++ K+ + + + + VG I I E Sbjct: 49 DAEITVGLNHRGIERIMEGLPVEKANALTEKVCGICSNGHIYNSCRVGEGALGIEIPERA 108 Query: 248 AVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTGLSDKCVLSYGAF 307 V E L + S + + + + + + YG Sbjct: 109 VYLRVLAEELERLHSHMLYLGHGSEVLCHETFAMRIFYIRESVMDLLYMMGGNRVQYGIS 168 Query: 308 PDIANDFGEKSLLMPGGAVINGDFNNVLPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFD 367 L V++ + E V R+ D + H Sbjct: 169 VLGGVRPRADLNLKEQQRVLDTM------------DYIDEKVADFAERFIADPMVMHRIT 216 Query: 368 GITDPWYNPGDVKGSDTNIQQLNEQERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAAT 427 G T + T Y + Sbjct: 217 G-TGELSQKQALDLHVTGPSLRATGYEYDF-----------------------------R 246 Query: 428 VESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATAST 487 E + ++ IL RA E + ++ +++ NL G + T Sbjct: 247 TEMFEYEPFEFDIITQDGGDVRANILMRATEIFESTKIIR----QVIKNLPKGPIVTRDW 302 Query: 488 EKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGA 547 + + + + + E PRG H + DGK+ P+ N GA Sbjct: 303 DLVDSPVYKS------YIEVPRGVCYHSYGLEDGKVRHSIIRTPSMSNI---------GA 347 Query: 548 YEAALMNTKMAIPEQPLEILRTLHSFDPCLACSTHVL 584 + + + + + + S DPC C+ + Sbjct: 348 MQESCIGHPIQDAQ------LAIVSCDPCFTCTDRAI 378 >UniRef50_Q7NI12 NAD(P)H-quinone oxidoreductase subunit H 1 n=3 Tax=cellular organisms RepID=NDHH1_GLOVI Length = 393 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 83/273 (30%), Gaps = 18/273 (6%) Query: 19 LVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICG 77 + + P + G +R V ++ +NV+ G + R +E I + R +V R Sbjct: 13 INLGPHHPSMHGVLRLIVTLDGENVVDCVPVLGYLHRSMEKIAESRTIIQYLPYVTRWDY 72 Query: 78 VCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDA 137 + T +V A E G++VP A IR IML HL+ I Sbjct: 73 LATMFTEAITVNAPEQLAGVQVPRRARYIRVIMLELSRIASHLLWLGPFMAD--IGATSP 130 Query: 138 LKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGI---FRNGYWGHPQYKL 194 R+ + + + + + + G + F N Sbjct: 131 FFYIFREREMIYDLFEAATGMRMMHNYFRVGGVAVDLPYGWVDKARDFCNYLPPKIDEYE 190 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAVFGG------------KNPHPNWIVGGMPCAIN 242 N F +E L + I+ G + I + + Sbjct: 191 RLITNNPIFRGRVEGLGYIGREDAINWGLSGPMLRASGVNWDLRKVDHYEIYDELDWNVA 250 Query: 243 IDESGAVGAVNMERLNLVQSIITRTADFINNVM 275 D G A + R+ ++ + ++ + Sbjct: 251 WDTGGDTLARYVVRIQEMRESVKMIRQALDQLP 283 Score = 50.3 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 20/164 (12%) Query: 411 GPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFF 470 GP+ R + + N+ TL R + R E + + ++ Sbjct: 221 GPMLRASGVNWDLRKVDHYEIYDELD-WNVAWDTGGDTLARYVVRIQEMRESVKMIRQAL 279 Query: 471 DKLM----TNLKNGNLATASTEKWE------------PATWPTECRGVGFTEAPRGALGH 514 D+L NL+ L+ +W P EAP+G LG Sbjct: 280 DQLPGGPYENLEAQRLSGGPKSEWNGFDYQFIGKKSSPTFKMPRGEHYVRVEAPKGELGV 339 Query: 515 WAAIRDGK-IDLYQCVVPTTWNAS--PRDPKGQIGAYEAALMNT 555 + D ++ P N + P+ +G A A++ + Sbjct: 340 YLIGDDSTFPWRWKIRPPGFINLAVLPKLVQGTKLADLMAILGS 383 >UniRef50_B4SJH6 NADH-quinone oxidoreductase subunit D 1 n=211 Tax=Proteobacteria RepID=NUOD1_STRM5 Length = 436 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 8/158 (5%) Query: 28 EGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALAS 87 G +R + ++ + V+ G + RG E + + + + +++R+ V + A Sbjct: 38 HGVLRLVLEMDGETVVRADPHVGLLHRGTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAY 97 Query: 88 VYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSE 147 V AIE +GI+ P A IR + +HL++ +D + L A + Sbjct: 98 VRAIETLLGIEAPIRAQYIRTMFDEITRILNHLMNIGT-GALDLGAMAVMLYAFREREEL 156 Query: 148 L-------AQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ 178 + + + G + ++ ++ K+ E Sbjct: 157 MDCYEAVSGARMHATYYRPGGVYRELPEQMPKYKESRW 194 >UniRef50_A0LAK4 Ni,Fe-hydrogenase I large subunit n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAK4_MAGSM Length = 379 Score = 118 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 44/199 (22%), Positives = 66/199 (33%), Gaps = 34/199 (17%) Query: 393 ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRI 452 E ++ P+W+G E L R + ++SAL L R Sbjct: 213 EDAGFLARPQWQGRCYESSSLTR--------------TCSPLLSALKPLH--GNGLLRRT 256 Query: 453 LCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGAL 512 + R E L+ A +P + + GVG EA RG L Sbjct: 257 VARLTELCRLFEALRQ------------GDDGALLAALQPFSAAQDGMGVGAVEAARGRL 304 Query: 513 GHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHS 572 H ++ +I Y + PT WN P G L + L+ + S Sbjct: 305 LHRVSLEGQQISHYAILAPTEWNFHP------QGVVAQGLAGLQGDRQAVLLQAHHVIES 358 Query: 573 FDPCLACSTHVLGDDGSEL 591 DPC+ + V+ D EL Sbjct: 359 IDPCVGYALTVVEADEEEL 377 >UniRef50_A9G9T3 NADH-quinone oxidoreductase subunit D 2 n=5 Tax=Myxococcales RepID=NUOD2_SORC5 Length = 388 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 4/153 (2%) Query: 8 QGYTINNAGRRLVVDPIT-RIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPR 66 G +++ L + P G +R ++ + + + G + R +E I + Sbjct: 15 PGAEMDDE-MTLNMGPHHPSTHGVLRFVISTDGEIIRKAVPDVGYLHRSIEKIGERCTYS 73 Query: 67 DAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 + +R+ + A A E +GI+VP A +R I H++ + Sbjct: 74 GFMPYTDRVDYIAAMFANEAWASACEKLMGIEVPKRAQYLRVISCELNRIGSHMIALGAM 133 Query: 127 AGMDWIDVLDALKADPRKTSELAQSLSSWPKSS 159 A + + R+ + + + Sbjct: 134 AMD--VGAVTPFPWALREREYINDFIEELCGAR 164 Score = 51.1 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 53/169 (31%), Gaps = 24/169 (14%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQST----LGRILCRAHEAQWAAGK 465 VGP R SV + G T R R E + +A Sbjct: 232 VGPNLRGSGVKWDLRKEDAYSVYPELEFDVPVGRGRYGTVGDCWDRFYVRVEECRESAKI 291 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGKIDL 525 L+ DK+ + ++ +K P + E+ RG +G + I G + Sbjct: 292 LRQALDKIDEH-PEDDILGKLPKKMRP-----DGEAYARIESARGDMGCYV-IGRGAEEA 344 Query: 526 YQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFD 574 Y+ + G++ A M + +++ + SFD Sbjct: 345 YRAR-------------FRTGSFTAMAMIEAKSPGLFLADLVALIASFD 380 >UniRef50_C6NSM4 NADH dehydrogenase I, B/C/D subunits n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NSM4_9GAMM Length = 565 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 82/284 (28%), Gaps = 20/284 (7%) Query: 15 AGRRLVVDPITR-IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVE 73 L V P G +R + + + ++ G RG+E I +G + + + Sbjct: 180 ETMVLNVGPHHPGTHGILRYILRLRGEEIVAVDPDIGYHHRGVEKIAEGHSYHNFIPYTD 239 Query: 74 RICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWID 133 R+ + + + AIE I VP+ A IR ++ HLV G D Sbjct: 240 RVDYLGGVLGEWPYLRAIEKLAAIHVPERAEGIRTLLAELCRISSHLVWLGSY-GNDLGT 298 Query: 134 VLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYK 193 + A A + L FF + EG + + + Sbjct: 299 MGPAFYAFRDRAWLLELMERFTGGRLHPQFFRIGGVADDLPEGWRSDLL--ALLRRIEKG 356 Query: 194 LPPEANLMGFAHYLEA------LDFQREIVKIH----------AVFGGKNPHPNWIVGGM 237 LP L A + + + F + P + + Sbjct: 357 LPDSERLTVENPIFRARTEGVGVVTAEQAERWCATSILLRSTGRAFDLRKAAPYGLYDRV 416 Query: 238 PCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + + +G + + ++ I + + LA Sbjct: 417 DFEVPVTTAGDAWSRTWLHIAEIRESIRILRQLADILPEGPTLA 460 Score = 44.1 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/140 (15%), Positives = 36/140 (25%), Gaps = 22/140 (15%) Query: 414 ARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKL 473 A +++ G A + + +T G R + +L Sbjct: 390 ATSILLRSTGRAFDLRKAAPYGLYDRVDFEVPVTTAGDAWSRTWLHIAEIRESIRILRQL 449 Query: 474 MTNLKNGNLATASTEK---------------------WEPATWPTECRGVGFTEAPRGAL 512 L G A P +G E+ RG L Sbjct: 450 ADILPEGPTLACDAPLALMPKSRTLLDIETLIHHFEQMADAFGPPPGSALGLGESARGLL 509 Query: 513 GHWAAIRDGKIDLYQCVVPT 532 G++ + DG Y+ V T Sbjct: 510 GYFV-VSDGGPKPYRLRVRT 528 >UniRef50_C0QBF7 HyfG n=3 Tax=Bacteria RepID=C0QBF7_DESAH Length = 503 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 44/289 (15%), Positives = 85/289 (29%), Gaps = 22/289 (7%) Query: 14 NAGRRLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + V P+ IE GH R + + + V +S G RG+E L+ + Sbjct: 143 EEAHEVAVGPVHAGIIEPGHFRFQCH--GETVYHLEISLGYQHRGVEPALKDGPDKRTLH 200 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 + E + G + H A IE GI VP IR I +H+ ++G Sbjct: 201 YFETLAGDTSIGHGTAGCCMIEALAGIDVPPRGQAIRAIAAELERIANHIGDLGAISGD- 259 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY-WGH 189 + L + R + + + G + + Q G H Sbjct: 260 -VGFLPTMSYCGRIRGDALNLTAMICGNRFGRGLVIPGGTAWDITHAQTGELLRRLDEIH 318 Query: 190 PQY------KLPPEANLMGFAHYLEALDFQREIVKIHAVFGG--------KNPHPNWIVG 235 L + L + + + + + + HP Sbjct: 319 ADAHSAIELMLNTPSVLARLENTGQVPTQTAREIGLVGLAARASGLKQDVRTSHPYENYR 378 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQ 284 P + ++G A R +Q+ + ++ + + + Sbjct: 379 LTPLPVITRKTGDCLARAQIRWGEIQASFKFIRTLLADLPGGEVANLWE 427 >UniRef50_C9RKY1 NADH dehydrogenase (Quinone) n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKY1_FIBSS Length = 379 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 43/287 (14%), Positives = 90/287 (31%), Gaps = 21/287 (7%) Query: 7 TQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPR 66 T+ + IN + P T G +R + ++ + ++ G + RG+E + Sbjct: 17 TEEFFINMGPQ----HPST--HGALRLTLRMDGETIVEVVPHFGYIHRGMEKQAESMSYL 70 Query: 67 DAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQL 126 A +R + + L V A+E + + VP IR ++ HLV FY Sbjct: 71 QYIAMSDRQDYLTAIQNNLGVVIALEKGMNVGVPLRGEYIRVMLQELGRIASHLV-FYGC 129 Query: 127 AGMDWIDVLDALKADPRKT-----------SELAQSLSSWPKSSPGYFFDVQNRLKKFVE 175 G D L + S L + S R+K F++ Sbjct: 130 FGGDLGGQTCLLFGFKEREMIHDILEEVTGSRLTTNFFRPGGSRYDVPDTFIPRVKAFLD 189 Query: 176 GGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALD--FQREIVKIHAV-FGGKNPHPNW 232 + + + + + +G +A+ +++ V F + +P Sbjct: 190 HMEDTMKDYERFLSKNIIVLERSIGIGVLSKEDAIAYGCSGPVLRASGVNFDVRRANPYS 249 Query: 233 IVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDA 279 I + + + +G R+ + + + Sbjct: 250 IYDQLDFDVPVFHNGDCYDRYKIRIAEIHESMKILRQCVEKFPTEGP 296 >UniRef50_A7C1S4 NADH-ubiquinone oxidoreductase subunit n=3 Tax=cellular organisms RepID=A7C1S4_9GAMM Length = 380 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 43/265 (16%), Positives = 77/265 (29%), Gaps = 19/265 (7%) Query: 27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALA 86 IEG+ +V ++ V+ G + RG E I++ R A V RIC Sbjct: 28 IEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVPRICVPDPPPMEET 87 Query: 87 SVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTS 146 A+E G++VP+ A IR +ML HL + + Sbjct: 88 YARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHLFIAGGTSA--TTGQYSNMFWGIADRD 145 Query: 147 ELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHY 206 + + F +++ + G L + +LP +L Sbjct: 146 LILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRL-GQVLDFLEARLPEYDDLFFDNPV 204 Query: 207 LE--ALDFQREIVKIHAVFGGKNPH--------------PNWIVGGMPCAINIDESGAVG 250 A + + +G P+ P + + I + G V Sbjct: 205 FHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRNDPYLVYEQLDFDIPTETGGDVL 264 Query: 251 AVNMERLNLVQSIITRTADFINNVM 275 R + + I + Sbjct: 265 DRIRVRRSEIIESTKILRQVIQRLP 289 Score = 48.0 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 46/172 (26%), Gaps = 28/172 (16%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSA----LNLPLSGIQSTLGRILCRAHEAQWAAGK 465 GP R G V D + ++P L RI R E + Sbjct: 226 TGPNLRA-----CGLPFDVRRNDPYLVYEQLDFDIPTETGGDVLDRIRVRRSEIIESTKI 280 Query: 466 LQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDG-KID 524 L+ +L + W E TEA +G LG +A G K Sbjct: 281 LRQVIQRLPHVKGPIRCHLPNPLAWNV----PEGDAYARTEAQKGELGFYAVSTGGTKPW 336 Query: 525 LYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPC 576 P+ + E + ++ I + S D C Sbjct: 337 RVHVRGPSCM--------HAVQVLEKLCLGARIED------IAMIMFSLDAC 374 >UniRef50_D1YVS8 Ech hydrogenase subunit E n=1 Tax=Methanocella paludicola SANAE RepID=D1YVS8_METPS Length = 360 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/267 (14%), Positives = 89/267 (33%), Gaps = 22/267 (8%) Query: 19 LVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGV 78 + ++P +R ++ + + + + G + RGLE + D A ER+C + Sbjct: 13 VWIEP-------LRLKLTTDGELIKDVDLEAGYVHRGLEKKFEW-DYNKAAYLSERVCAI 64 Query: 79 CTGVHALASVYAIED-AIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ-LAGMDWIDVLD 136 CT H+ +E G+++P A IIR IML H H + L + + ++ Sbjct: 65 CTQHHSTCFCLGVEGTMAGLELPRRAAIIRTIMLELERLHSHFLAIGLTLEAIGFENMFM 124 Query: 137 ALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPP 196 + ++ + + R ++ F + Sbjct: 125 LCFRHREQVLDVFERTTGNRVLHGINIVGGVTRNIGPEMAKEILDFCDDIEKRAHEIERI 184 Query: 197 EANLMGFAHYLEALD-FQREIVKIHAVFGG-----------KNPHPNWIVGGMPCAINID 244 + ++ + ++ K V G ++ P+ + + ++ Sbjct: 185 IVSSYTIKQRMQGVGVMTEKMAKELGVVGPVARGSNVPYDVRHAAPHLLYREVKVTPIVE 244 Query: 245 ESGAVGAVNMERLNLVQSIITRTADFI 271 + G A ++ R+ + I + Sbjct: 245 KDGDCWARSLVRVRELFQSIDLIRQLV 271 Score = 78.0 bits (190), Expect = 9e-13, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 51/171 (29%), Gaps = 26/171 (15%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP+AR + A + R + + R L R E + ++ Sbjct: 212 VGPVARGSNVPYDVRHAAPHLLYREVKVTPIVEKDGD-CWARSLVRVRELFQSIDLIRQL 270 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRDGK-IDLYQC 528 L E + + E + EAPRG L ++ + K +D + Sbjct: 271 V---------PLLDGTPDELFAKSKAMPEGENIARVEAPRGELFYYVRGKKSKELDRVKV 321 Query: 529 VVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEILRTLHSFDPCLAC 579 T N L + ++ +FDPC+ C Sbjct: 322 RTSTYGN---------------GLGIAPLIKGSHIADVGLITITFDPCIGC 357 >UniRef50_Q2JFL7 NADH-quinone oxidoreductase subunit D n=81 Tax=Bacteria RepID=NUOD_FRASC Length = 482 Score = 117 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 29/315 (9%) Query: 14 NAGRRLVV-----DPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDA 68 R+VV P T G +R + I + V + G + G+E + R A Sbjct: 76 EENERIVVNMGPQHPST--HGVLRLVLEIEGETVTETRLVIGYLHTGIEKSCEYRTWTQA 133 Query: 69 WAFVERICGVCTGVHALASVYAIEDAIGIK--VPDNANIIRNIMLATLWCHDHLVHFYQL 126 F+ R + + A ++E +GI VP+ A +IR +++ HLV Sbjct: 134 VTFLTRADYLSPLFNEAAYCLSVERLLGITEQVPERATVIRVMVMELQRIASHLVWLATG 193 Query: 127 AGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGY 186 + A+ R+ ++ L + + L + + G R Sbjct: 194 GME--LGATTAMIFGFREREKVLDLLELITGLRMNHAYIRPGGLAQDLPDGAERAIRAFL 251 Query: 187 WGHPQYK---------LPPEANLMGFAHYLEALDFQR------EIVKIHAVFGGKNPHPN 231 P+ P M + L+A + + + P Sbjct: 252 ADMPKRIREYHALLTGQPVWKARMVDVNVLDAAGCIALGTTGPVLRAAGLPWDLRKTMPY 311 Query: 232 WIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSE 291 + G A + RL + + D + + P + + W Sbjct: 312 CGYETYEFDVPTALEGDSFARYLVRLEEMGESLKIV-DQCLDRLRPGPVMVADKKIAWPS 370 Query: 292 IG--TGLSDKCVLSY 304 L+Y Sbjct: 371 QLSVGSDGTGNSLAY 385 >UniRef50_B8I2P5 NADH dehydrogenase (Ubiquinone) 30 kDa subunit n=2 Tax=Clostridium RepID=B8I2P5_CLOCE Length = 530 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 48/303 (15%), Positives = 84/303 (27%), Gaps = 35/303 (11%) Query: 19 LVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R ++ + +I + RGLE + + + F ERI Sbjct: 174 VPVGPVHAGIIEPGHFRF--SVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERI 231 Query: 76 CGVCTGVHALASVYAIEDAIGIK-VPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDV 134 G T ++LA AIE GI +P+ A R + HL L +D + Sbjct: 232 SGDETFTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGL-CVDTAYI 290 Query: 135 LDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKL 194 + + + + S + L++ I KL Sbjct: 291 FPSGQFAMMRRW-IQLLNEQLTGSRFLRNTNKPGGLRRDFVRSNEKIIL-----ECINKL 344 Query: 195 PPEANLMGFAHYLEALDFQREIVKIHAV-----------FGGKNP---------HPNWIV 234 E + R GG+ P Sbjct: 345 DKEFKETVAIIKNNGMFIDRVEHTGILENSIAVDLNVVGPGGRASGVKTDVRKEFPYAAY 404 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA--IGQFNKPWSEI 292 + + + V ++ V I + + ++ IG+ Sbjct: 405 SKLKFNVPEHSNCDVNCRMNVKIEEVIESINIIKQVLEKMPEEGPVSVDIGELKPYSYAF 464 Query: 293 GTG 295 G Sbjct: 465 GMT 467 Score = 59.9 bits (143), Expect = 3e-07, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 42/136 (30%), Gaps = 11/136 (8%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP R G V + L + + + + CR + + Sbjct: 382 VGPGGRA-----SGVKTDVRKEFPYAAYSKLKFNVPEHSNCDVNCRMNVKIEEVIESINI 436 Query: 470 FDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAI-RDGKIDLYQC 528 +++ + + + +P ++ G TE+PRG H+ + I Y+ Sbjct: 437 IKQVLEKMPEEGPVSVDIGELKPYSY-----AFGMTESPRGENLHFVMTGENNTIFRYKV 491 Query: 529 VVPTTWNASPRDPKGQ 544 P+ N Sbjct: 492 RTPSFCNWPALCHAVN 507 >UniRef50_Q6APF2 Related to hydrogenase, component E-formate hydrogenlyase subunit 5 n=1 Tax=Desulfotalea psychrophila RepID=Q6APF2_DESPS Length = 509 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 54/279 (19%), Positives = 83/279 (29%), Gaps = 34/279 (12%) Query: 19 LVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERI 75 + V P+ IE GH R + + V+ + G RG+E +L + E I Sbjct: 153 VAVGPVHAGIIEPGHFRFQC--AGEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESI 210 Query: 76 CGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVL 135 G + H L+ AIE GI V A IIR L +H+ LAG + Sbjct: 211 AGDTSIGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPP 270 Query: 136 DALKADPRKTSELAQSLSS---------WPKSSPGYFFDVQNRLKKFVEGGQLGIFRN-- 184 A R + S P + Q +L + G N Sbjct: 271 AAYFGRIRGEFLNLLQVLSGNRFGKGLVRPGGVTHIMREEQRKLIREKLLEVTGEIENIC 330 Query: 185 ----------GYWGHPQYKLPPEANLMGFAHYLEALDFQREIVKIHAVFGGKNPHPNWIV 234 + H A L + + I + +N P Sbjct: 331 DLIFSAHTVQARFEHT------GTVQHEMAKDLGLVGYSGRASGI--AYDVRNSFPTECY 382 Query: 235 GGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINN 273 +P N +G V + M R+ + + I Sbjct: 383 RELPANENRVTNGDVNSRGMVRVEEIMHSLKLINILIEE 421 >UniRef50_UPI00016C492D NADH dehydrogenase subunit D n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C492D Length = 409 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 43/319 (13%), Positives = 91/319 (28%), Gaps = 30/319 (9%) Query: 10 YTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAW 69 YT+N + P T +R + ++ + ++ G + G E + + D Sbjct: 21 YTLNFGPQ----HPAT--HTTLRLILTLDGETIVKAVPDIGYLHSGFEKLGEDLDFNQYV 74 Query: 70 AFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGM 129 V+R+ + + A +E IGI++ +R I+ DHL+ A + Sbjct: 75 TIVDRMNYISPFANECAWFTTVEKLIGIELTPRCKYLRTILAELARISDHLLCVGA-AAL 133 Query: 130 DWIDVLDALKADPRKT-----------SELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQ 178 D + L A + S DV ++ FV+ + Sbjct: 134 DLGALTGFLYAFNAREKVYNIMEAASGQRFHPSYCRVGGLMADVNDDVVALIRDFVKTFR 193 Query: 179 LGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQ-----REIVKIHAVFGGKNPHPNWI 233 + +G +A++ + P+ + Sbjct: 194 KVHADICRLLNRNRIFIDRTKGIGVLSKEDAINTSCSGPVARASGVVRDLRKDEPYLAYK 253 Query: 234 VGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVM-------IPDALAIGQFN 286 I + G + R+ + + N+ + D L I N Sbjct: 254 ELSGAFKIVCGKGGDCYNRYLVRMGEMLESWKIINAAVENLPSGPVNVDLNDKLTIPDKN 313 Query: 287 KPWSEIGTGLSDKCVLSYG 305 + I + + + Sbjct: 314 ATYRSIEGLIQHFELFMWN 332 >UniRef50_A3ZL03 NADH dehydrogenase (Ubiquinone) n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZL03_9PLAN Length = 418 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 53/179 (29%), Gaps = 8/179 (4%) Query: 6 ETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDP 65 T +N + P T G +R + + + V G + R E I + P Sbjct: 32 RTDEMLVNMGPQ----HPST--HGVLRLVLRTDGEVVSEATPHIGYLHRCAEKIGENLTP 85 Query: 66 RDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQ 125 R + +R+ + L A+E I +P+ A +R I+ HLV Sbjct: 86 RQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRIASHLVGMGT 145 Query: 126 LAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRN 184 + R+ + L + Y + + G L Sbjct: 146 YGLD--LGSFSPFLYAFRERERILDLLEDACGARLTYSYLTPGGATADLPPGWLQKLTG 202 >UniRef50_A1RZ50 NADH dehydrogenase (Ubiquinone) n=6 Tax=Archaea RepID=A1RZ50_THEPD Length = 404 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 39/285 (13%), Positives = 88/285 (30%), Gaps = 19/285 (6%) Query: 13 NNAGRRLVVDPITRIEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFV 72 + + L + P GHMR V + +++ G + R +E + +GR+ A + Sbjct: 19 DESVYELFIGPQHPSSGHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLL 78 Query: 73 ERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMDWI 132 ER+ + + + V A+E + ++ P A +R ++ HL Y + + Sbjct: 79 ERLTIIDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHL---YGMGIAGIM 135 Query: 133 DVLDALKADPRKTSELAQSLSSWPKS----------SPGYFFDVQNRLKKFVEGGQLGIF 182 + E+ L+ Q +KF + + Sbjct: 136 LNHSTMFMWAFGDREVWLQLAEELTGARLTHTYSVPGGVRRDLPQGFGEKFEKAARYMER 195 Query: 183 RNGYWGHPQYKLPPEANLMGFAHYLEALDFQRE------IVKIHAVFGGKNPHPNWIVGG 236 R + + P L+ + R + + + Sbjct: 196 RLQDYMRIFLENPQVVARYEGVGVLKKSEASRLGVVGPNLRASGVKYDARLADDYGAYKD 255 Query: 237 MPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALA 281 + + E G A + R+ ++ I+ + + L+ Sbjct: 256 LEFEVPTREEGDCMARMLVRVEEIKQSISIIRQVLRKMPDGPILS 300 Score = 45.3 bits (105), Expect = 0.007, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 32/143 (22%), Gaps = 18/143 (12%) Query: 410 VGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYF 469 VGP R + + +P + R+L R E + + ++ Sbjct: 231 VGPNLRASGVKYDAR-LADDYGAYKDLEFEVPTREEGDCMARMLVRVEEIKQSISIIRQV 289 Query: 470 FDKLMTNLKNGNLATASTEK----------------WEPATWPTECRGVGFTEAPRGALG 513 K+ + V E G + Sbjct: 290 LRKMPDGPILSEKYLKLLPPKTRERVLQEGRVKFPALFASLKLPAGEAVARAEMGHGEIF 349 Query: 514 HWAAIRDG-KIDLYQCVVPTTWN 535 + K + V P+ N Sbjct: 350 YHITGDGSAKPYRLRVVTPSFRN 372 >UniRef50_Q609T9 Hydrogenase subunit n=1 Tax=Methylococcus capsulatus RepID=Q609T9_METCA Length = 527 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 88/301 (29%), Gaps = 23/301 (7%) Query: 14 NAGRRLVVDPIT--RIE-GHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWA 70 + V P+ IE GH R + V+ G + +G+E + GRDP Sbjct: 168 PEVNEIPVGPVHAGIIEPGHFRFLAL--GETVLNLEERLGYVHKGIEKLAVGRDPEGLAR 225 Query: 71 FVERICGVCTGVHALASVYAIEDAIGIKVPDNANIIRNIMLATLWCHDHLVHFYQLAGMD 130 R+ G T HA A+ A+E A G+ P+ A +R I + +HL + Sbjct: 226 LAGRVSGDTTVGHAWAACQAMEHAAGVAPPERALWLRAIFIERERVANHLNDIGAICNDT 285 Query: 131 WIDVLDALKADPRKTSELAQSLSSWPKSSPGYFFDVQNRLKKFVEGGQLGIFRNGYWGHP 190 + + R+ + + E Sbjct: 286 AFAFGHSQFSRLRELWLRDNLRWFGHRLLMDRIVPGGVAVDLPAEATSAMPAAMAALRSE 345 Query: 191 QYKLPPEANLMGFAHYL---EALDFQREIVKIHAVFG------------GKNPHPNWIVG 235 +L P + + +R + ++ + + PH + Sbjct: 346 LEELKPILDESTIFQDRVVGAGVLSERIVRELGCLGYVARACGIGRDVRERAPHAPYDRL 405 Query: 236 GMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMIPDALAIGQFNKPWSEIGTG 295 G+ G V A R + + + D + P L P + G G Sbjct: 406 GV--KAVTRGDGDVAARLYVRYEELLASLDIL-DQCLRRIEPGPLRADWRTPPANAEGLG 462 Query: 296 L 296 L Sbjct: 463 L 463 Score = 50.7 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 7/125 (5%) Query: 417 LIAYHKGDAATVESVDRMMSALNLPLSGIQSTLGRILCRAHEAQWAAGKLQYFFDKLMTN 476 +A G V L + + G + R + D+ + Sbjct: 382 YVARACGIGRDVRERAPHAPYDRLGVKAVTRGDGDVAARLYVRYEELLASLDILDQCLRR 441 Query: 477 LKNGNLATASTEKWEPATWPTECRGVGFTEAPRGALGHWAAIRD-GKIDLYQCVVPTTWN 535 ++ G L P G+G E RG + + G I + P+ +N Sbjct: 442 IEPGPLRADWRTP------PANAEGLGLVEGWRGEIATYVRFDGAGSIVRFFPRDPSVFN 495 Query: 536 ASPRD 540 + Sbjct: 496 WPALE 500 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.114 0.308 Lambda K H 0.267 0.0353 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,980,307,942 Number of Sequences: 3077464 Number of extensions: 114757482 Number of successful extensions: 300499 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 819 Number of HSP's successfully gapped in prelim test: 100 Number of HSP's that attempted gapping in prelim test: 296620 Number of HSP's gapped (non-prelim): 1770 length of query: 597 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 462 effective length of database: 624,938,716 effective search space: 288721686792 effective search space used: 288721686792 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.4 bits) S2: 95 (41.4 bits)