Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	R	V	A	T	I	T	L	N	P	A	Y	D	L	V	G	F	C	P	E	I	E	R	G	E	V	N	L	V	K	T	T	G	L	H	A	A	G	K	G	I	N	V	A	K	V	L	K	D	L	G	I	D	V	T	V	G	G
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	L	G	K	D	N	Q	D	G	F	Q	Q	L	F	S	E	L	G	I	A	N	R	F	Q	V	V	Q	G	R	T	R	I	N	V	K	L	T	E	K	D	G	E	V	T	D	F	N	F	S	G	F	E	V	T	P	A	D	W	E	R
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		F	V	T	D	S	L	S	W	L	G	Q	F	D	M	V	C	V	S	G	S	L	P	S	G	V	S	P	E	A	F	T	D	W	M	T	R	L	R	S	Q	C	P	C	I	I	F	D	S	S	R	E	A	L	V	A	G	L	K	A	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		P	W	L	V	K	P	N	R	R	E	L	E	I	W	A	G	R	K	L	P	E	M	K	D	V	I	E	A	A	H	A	L	R	E	Q	G	I	A	H	V	V	I	S	L	G	A	E	G	A	L	W	V	N	A	S	G	E	W	I	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	P	P	S	V	D	V	V	S	T	V	G	A	G	D	S	M	V	G	G	L	I	Y	G	L	L	M	R	E	S	S	E	H	T	L	R	L	A	T	A	V	A	A	L	A	V	S	Q	S	N	V	G	I	T	D	R	P	Q	L	A
Secondary structure
SS confidence
Disorder																																																		?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.
Sequence		A	M	M	A	R	V	D	L	Q	P	F	N
Secondary structure
SS confidence
Disorder									?			?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jg1 chain C Region: 2 - 311 Aligned: 309 Modelled: 310 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate Phyre2 PDB 2jg5 chain B Region: 5 - 312 Aligned: 303 Modelled: 308 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus Phyre2 PDB 2f02 chain A domain 1 Region: 5 - 312 Aligned: 307 Modelled: 302 Confidence: 100.0% Identity: 25% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3cqd chain B Region: 1 - 307 Aligned: 306 Modelled: 307 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli Phyre2 PDB 2abq chain A domain 1 Region: 4 - 309 Aligned: 301 Modelled: 305 Confidence: 100.0% Identity: 28% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2ajr chain A domain 1 Region: 4 - 311 Aligned: 308 Modelled: 307 Confidence: 100.0% Identity: 24% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3jul chain A Region: 5 - 312 Aligned: 293 Modelled: 301 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate Phyre2 PDB 1rkd chain A Region: 2 - 305 Aligned: 299 Modelled: 300 Confidence: 100.0% Identity: 21% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1vm7 chain A Region: 1 - 306 Aligned: 293 Modelled: 306 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3kzh chain A Region: 2 - 310 Aligned: 301 Modelled: 309 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 3pl2 chain D Region: 2 - 303 Aligned: 293 Modelled: 302 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2rbc chain A Region: 2 - 310 Aligned: 295 Modelled: 303 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2nwh chain A Region: 1 - 311 Aligned: 300 Modelled: 311 Confidence: 100.0% Identity: 18% PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens Phyre2 PDB 1bx4 chain A Region: 1 - 299 Aligned: 298 Modelled: 299 Confidence: 100.0% Identity: 17% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2pkk chain A Region: 2 - 305 Aligned: 287 Modelled: 302 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 3go6 chain B Region: 2 - 305 Aligned: 273 Modelled: 278 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 2xtb chain A Region: 2 - 292 Aligned: 289 Modelled: 291 Confidence: 100.0% Identity: 16% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator Phyre2 PDB 2qcv chain A Region: 1 - 311 Aligned: 300 Modelled: 310 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 2c49 chain A Region: 3 - 307 Aligned: 284 Modelled: 295 Confidence: 100.0% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Phyre2 PDB 1v19 chain A Region: 1 - 303 Aligned: 284 Modelled: 303 Confidence: 100.0% Identity: 24% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 1 c2jg1C_ 2 c2jg5B_ 3 d2f02a1 4 c3cqdB_ 5 d2abqa1 6 d2ajra1 7 c3julA_ 8 d1rkda_ 9 d1vm7a_ 10 c3kzhA_ 11 c3pl2D_ 12 c2rbcA_ 13 c2nwhA_ 14 d1bx4a_ 15 c2pkkA_ 16 c3go6B_ 17 c2xtbA_ 18 c2qcvA_ 19 c2c49A_ 20 d1v19a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jg1C_ 100.0 25 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 2 c2jg5B_ 100.0 29 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 3 d2f02a1 100.0 25 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 4 c3cqdB_ 100.0 28 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 5 d2abqa1 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 6 d2ajra1 100.0 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 7 c3julA_ 100.0 27 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 8 d1rkda_ 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 9 d1vm7a_ 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 10 c3kzhA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 11 c3pl2D_ 100.0 21 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 12 c2rbcA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 13 c2nwhA_ 100.0 18 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 14 d1bx4a_ 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 15 c2pkkA_ 100.0 20 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 16 c3go6B_ 100.0 24 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 17 c2xtbA_ 100.0 16 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 18 c2qcvA_ 100.0 19 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 19 c2c49A_ 100.0 14 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 20 d1v19a_ 100.0 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 21 c3looC_ not modelled 100.0 15 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 22 c3iq0B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 23 d2fv7a1 not modelled 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 24 c3in1A_ not modelled 100.0 20 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 25 c3b1qD_ not modelled 100.0 19 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 26 d2afba1 not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 27 c3i3yB_ not modelled 100.0 20 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 28 d2absa1 not modelled 100.0 21 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 29 c2absA_ not modelled 100.0 21 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 30 c3ktnA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 31 c2varB_ not modelled 100.0 15 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 32 d2dcna1 not modelled 100.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 33 c3bf5A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 34 c3b3lC_ not modelled 100.0 16 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 35 d1tyya_ not modelled 100.0 28 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 36 c3gbuD_ not modelled 100.0 19 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 37 c3lhxA_ not modelled 100.0 18 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 38 c3lkiA_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 39 c2qhpA_ not modelled 100.0 19 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 40 c1tz6B_ not modelled 100.0 29 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 41 c3kd6B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 42 d1vk4a_ not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 43 c3hj6B_ not modelled 100.0 21 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 44 c2ddmA_ not modelled 99.9 20 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 d1vi9a_ not modelled 99.8 24 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 46 c3mbjA_ not modelled 99.8 16 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 47 d1lhpa_ not modelled 99.8 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 48 d1ub0a_ not modelled 99.7 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 49 c2i5bC_ not modelled 99.7 19 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 50 c3ibqA_ not modelled 99.7 18 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 51 c3rm5B_ not modelled 99.6 15 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 52 c3dzvB_ not modelled 99.5 14 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 53 d1v8aa_ not modelled 99.4 10 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 54 d1jxha_ not modelled 99.4 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 55 d1kyha_ not modelled 99.2 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 56 d2ax3a1 not modelled 99.0 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 57 d1ekqa_ not modelled 99.0 16 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 58 c2ax3A_ not modelled 98.9 14 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 59 d1gc5a_ not modelled 98.8 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 60 c2r3bA_ not modelled 98.8 13 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 61 c3bgkA_ not modelled 98.7 14 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 62 d1l2la_ not modelled 98.6 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 63 d1ua4a_ not modelled 98.6 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 64 c3nm3D_ not modelled 98.6 14 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 65 d1u2xa_ not modelled 98.6 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 66 c3drwA_ not modelled 98.5 16 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 67 c3k5wA_ not modelled 98.3 13 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 68 c3k96B_ not modelled 58.2 14 PDB header:oxidoreductase Chain: B: PDB Molecule:glycerol-3-phosphate dehydrogenase [nad(p)+]; PDBTitle: 2.1 angstrom resolution crystal structure of glycerol-3-phosphate2 dehydrogenase (gpsa) from coxiella burnetii 69 c2vawA_ not modelled 49.6 11 PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp 70 d1djqa2 not modelled 44.4 15 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:C-terminal domain of adrenodoxin reductase-like 71 c3d8xB_ not modelled 43.1 16 PDB header:oxidoreductase Chain: B: PDB Molecule:thioredoxin reductase 1; PDBTitle: crystal structure of saccharomyces cerevisiae nadph dependent2 thioredoxin reductase 1 72 d1ofua1 not modelled 38.1 11 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 73 d2d5ba2 not modelled 32.0 12 Fold:Adenine nucleotide alpha hydrolase-like Superfamily:Nucleotidylyl transferase Family:Class I aminoacyl-tRNA synthetases (RS), catalytic domain 74 c2dlnA_ not modelled 31.9 20 PDB header:ligase(peptidoglycan synthesis) Chain: A: PDB Molecule:d-alanine--d-alanine ligase; PDBTitle: vancomycin resistance: structure of d-alanine:d-alanine2 ligase at 2.3 angstroms resolution 75 d1d7ya1 not modelled 31.8 18 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 76 d1rq2a1 not modelled 31.2 18 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 77 d2obba1 not modelled 30.7 8 Fold:HAD-like Superfamily:HAD-like Family:BT0820-like 78 c1gqqA_ not modelled 28.4 14 PDB header:cell wall biosynthesis Chain: A: PDB Molecule:udp-n-acetylmuramate-l-alanine ligase; PDBTitle: murc - crystal structure of the apo-enzyme from haemophilus2 influenzae 79 c1u5tB_ not modelled 27.4 14 PDB header:transport protein Chain: B: PDB Molecule:defective in vacuolar protein sorting; vps36p; PDBTitle: structure of the escrt-ii endosomal trafficking complex 80 c1ofuB_ not modelled 27.4 11 PDB header:bacterial cell division inhibitor Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of sula:ftsz from pseudomonas aeruginosa 81 c1w7pD_ not modelled 27.3 14 PDB header:protein transport Chain: D: PDB Molecule:vps36p, ylr417w; PDBTitle: the crystal structure of endosomal complex escrt-ii2 (vps22/vps25/vps36) 82 c3sc6F_ not modelled 25.7 23 PDB header:oxidoreductase Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase; PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp 83 d1nhpa2 not modelled 23.6 28 Fold:FAD/NAD(P)-binding domain Superfamily:FAD/NAD(P)-binding domain Family:FAD/NAD-linked reductases, N-terminal and central domains 84 c1w59B_ not modelled 22.5 14 PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii) 85 c2zj3A_ not modelled 20.5 9 PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase 86 c1v59B_ not modelled 20.2 29 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: crystal structure of yeast lipoamide dehydrogenase2 complexed with nad+ 87 c3crcB_ not modelled 19.7 19 PDB header:hydrolase Chain: B: PDB Molecule:protein mazg; PDBTitle: crystal structure of escherichia coli mazg, the regulator2 of nutritional stress response 88 d2vapa1 not modelled 19.2 16 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 89 d1y5ea1 not modelled 18.7 18 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 90 c2puwA_ not modelled 18.2 13 PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans 91 c2f00A_ not modelled 17.2 12 PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc 92 d1ztda1 not modelled 16.7 20 Fold:RNase III domain-like Superfamily:RNase III domain-like Family:PF0609-like 93 d1w5fa1 not modelled 16.3 14 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 94 d1p3da1 not modelled 15.9 17 Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain 95 c2nm0B_ not modelled 15.9 35 PDB header:oxidoreductase Chain: B: PDB Molecule:probable 3-oxacyl-(acyl-carrier-protein) reductase; PDBTitle: crystal structure of sco1815: a beta-ketoacyl-acyl carrier protein2 reductase from streptomyces coelicolor a3(2) 96 d2gtad1 not modelled 15.4 15 Fold:all-alpha NTP pyrophosphatases Superfamily:all-alpha NTP pyrophosphatases Family:MazG-like 97 c2gr2A_ not modelled 13.9 25 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin reductase; PDBTitle: crystal structure of ferredoxin reductase, bpha4 (oxidized form) 98 d1ml4a2 not modelled 13.9 9 Fold:ATC-like Superfamily:Aspartate/ornithine carbamoyltransferase Family:Aspartate/ornithine carbamoyltransferase 99 c2is8A_ not modelled 13.8 9 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0