 |
| Job Description | Q57083 | | Confidence | 93.69% | Date | Thu Jan 5 12:37:13 GMT 2012 |
| Rank | 150 | Aligned Residues | 48 |
| % Identity | 13% | Template | c2q0oA_ |
| PDB info |
PDB header:transcription | Chain: A: PDB Molecule:probable transcriptional activator protein trar; |
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
|
| Resolution | 2.00 Å |
|
|   |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . |
| Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | K | A | P | L | N | L | L | R | A | F | E | A | A | G | R | T | G | A | F | A | L | A | A | S | E | L | E | L | S | P | S | A | I | S | H | A | I | R | K | L | E | N | L | L | D | V | R |
| Query Conservation |   |
  |   |   |   |
|   |   |
|   |   |
|   |
|
|   |   |   |
|
|   |
|   |
|
|   |   |
|   |
|
|
|   |
|
|
|   |   |
|   |   |
|
|   |   |
|
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |
|
|   |
|
|   |
|
|
|   |
|
|
|   |
|   |
|   |   |
|
|
|   |   |
|   |
|
|   |   |
|
|   |   |
|
|   |   |
|   |   |
|
|
|   |   |
| Template Sequence |   |
Q | M | L | S | P | R | E | M | L | C | L | V | W | A | S | K | G | K | T | A | S | V | T | A | N | L | T | G | I | N | A | R | T | V | Q | H | Y | L | D | K | A | R | A | K | L | D | A | E |
| Template Known Secondary structure |   |
G | S |
|
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S |
| Template Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
174 | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|