HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/206e0a996e5e01b0/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/206e0a996e5e01b0/query.hhm DATE Mon Jan 9 01:57:35 2012 LENG 108 match states, 108 columns in multiple alignment FILT 101 out of 107 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.2 EVD 0.4093 -1.2241 SEQ >ss_pred CCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC CCCCCCCC >ss_conf 9857974288998736666787799999999999999739866899989999999999999998999999993988899899999999999999999517 88877789 >Consensus lxxENlxxgxxlxxsxxixxxxxxxlxxlxxiLxrGxxxGxFRxxvDxxxlxxxIxxlcxfxxsnrxTlxxxxgxdxxxxxxxxxxxxxixdxvLxxlxx xxxxxaxx >batch____ MHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNINIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLV DPSSTAHE >UniRef50_B1Z5B4(165-270:270) Transcriptional regulator, TetR family n=7 Tax=Burkholderiales RepID=B1Z5B4_BURA4 E=3e-24 s/c=1.06 id=21% cov=99% LNTENLHKGKHLSKLERRGEYSSHAVEIIAKILENGVEQGLFRTGLRARDVFLLIISTAYFYTSNLYTLSAFLGEELNAPDAVRHWETFVIDSVLRVVRK DASIDA-- >UniRef50_A8ZVQ6(103-197:204) Transcriptional regulator, TetR family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZVQ6_DESOH E=5e-13 s/c=0.80 id=16% cov=87% MVSEVLEGGRHIMAvvDRIFSQTGISPPQLIRPFIEKAVASDLIRP-VDPMQTTISVVGMCMFYFVARPLMEHIWGKPADEKAFIAQRKEAIVDLV---- ---------- >UniRef50_Q0FKP9(78-179:181) Hypothetical transcriptional regulator protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FKP9_9RHOB E=8e-21 s/c=0.99 id=21% cov=94% ---ENLNKGEFLRRVDKAGLNVDNLKGIYSKVLDMGMEQGVFRRGVDPVDLYFVASSLCWYTVATQYTFGITFETDVLSKENLASRRRIIHTAVRGFLTE PQP----- >UniRef50_Q2G9F6(124-212:212) Transcriptional regulator, TetR family n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2G9F6_NOVAD E=4e-12 s/c=0.81 id=16% cov=81% ------------AEAKRIADQYlLPLHRAYNRFIGEGVKAGVFRP-INPQLFYFTVTGAADRFFSARLVLKHCFDQDTLTEQLRDSYREHTVDFIMAGIL A-------- >UniRef50_A9BMH3(149-237:246) Transcriptional regulator, TetR family n=1 Tax=Delftia acidovorans SPH-1 RepID=A9BMH3_DELAS E=0.001 s/c=0.50 id=13% cov=58% ---------------------------------------------VDPRFIHLAILSISAFLPTARPLLAELFGEGPEADQQIERYLRFMSHLLAERIRQ DAPAQDH- >UniRef50_UPI00016C3662(105-196:204) transcriptional regulator, TetR family protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3662 E=2e-09 s/c=0.69 id=19% cov=83% -------QAAHVVVSEFIQPAAFALLAILRELL----------PHLDERRLLMTgfsVIGQCLFYRQNIRVAELIFGKEPVAALDATAVAEHVVAFTLAA LGHAPPVGA-- >UniRef50_A5FA63(117-208:209) Transcriptional regulator, TetR family n=2 Tax=Flavobacterium RepID=A5FA63_FLAJ1 E=6e-09 s/c=0.67 id=18% cov=81% ---------------QAFTELKKGNLKSVESIIKQGQDQGVFRKDVNIQLITPTIIGTFFHFHMNRSFFEELLGlktEEMFNNYINNDLKKHIQQTIKAL LVYE------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3748 * 875 2073 * * * * * * 2808 * * 1 0 * * * * * * 4748 0 0 H 2 3235 * * * * * 3673 * * * * 1456 * * 2917 2879 3260 3680 * * 2 0 * * * * * * 4783 0 0 S 3 5408 * 4993 5360 5037 5408 5381 5805 * * 5569 2600 * 5091 * 1365 2497 * 4506 * 3 0 * * * * * * 5042 0 0 E 4 5822 * * 26 * * * * * * * * * * * * * * * * 4 0 * * * * * * 5660 0 0 N 5 3842 * * * * * * * * * 5489 182 * * * * * 5248 * * 5 0 * * * * * * 5720 0 0 Q 6 5264 * * * 4597 * * 2931 6216 912 3141 * * 3818 * * 6100 4112 * * 6 0 * * * * * * 5751 0 0 S 7 5565 6199 * 3680 5870 * 1688 5139 * 3381 4359 2369 * 2948 5709 4495 * * * * 7 0 * * * * * * 5751 0 0 K 8 * 6360 6357 3519 6553 2558 4299 * 2466 * * 3529 * 2959 2002 * * * * 6475 8 0 * * * * * * 5789 0 0 G 9 1582 * * * * 681 4575 * * * * * * * * * * * * * 9 0 * * * * * * 5789 0 0 V 10 3838 * * 2977 * 5717 * 4976 2523 * 6240 4832 * 5265 1383 5367 5811 3670 * * 10 56 5589 5881 2000 415 * * 5789 1000 0 H 11 4571 * * * 3146 5708 1290 * * * 5726 6095 * * * 5432 * 5990 5930 1608 11 28 * 5718 * * * 0 5766 0 1000 Y 12 3108 * * * 4784 * * 2434 * 1158 4345 * * * * 6096 * 3120 * 4805 12 0 * * * * 1000 1000 5766 0 1587 A 13 3088 * * 4095 * 5780 * * 1804 5591 5360 6505 4870 4137 2154 4743 4518 3911 * * 13 0 * * * * 0 * 5837 0 1000 K 14 4650 * 6403 3599 * 5107 * * 2253 * * 3820 5849 2130 2690 4427 3841 4675 * * 14 175 4401 3903 592 1571 * * 5853 1819 0 S 15 3158 * 5311 * 5830 5562 * 4304 * 4125 5963 * * * 5678 623 6313 5737 * * 15 47 * 4964 * * * 0 5777 0 2140 Q 16 3732 * 2612 2899 * 4275 * * 2738 6091 * 4708 3617 3209 3774 3693 5523 6538 * * 16 86 * 4114 * * 306 2387 6054 0 2820 R 17 2649 * * 4811 4985 6361 6082 3357 3278 4582 6481 5521 5761 * 2279 3937 4608 3068 * 5578 17 0 * * * * 1845 471 6247 0 2447 L 18 5198 * * * 3009 * * 1617 * 1477 5221 * * * 5166 * 5224 3611 * * 18 0 * * * * 1324 736 6286 0 2038 L 19 3747 * * 5954 6464 4043 6211 * 2353 4767 * 6236 2964 4466 2233 4226 3399 4514 * * 19 0 * * * * * 0 6354 0 1414 E 20 3854 * 2377 2036 * 4930 * 6470 5289 3734 * 4757 3555 3339 * 4278 3696 * * * 20 0 * * * * * 0 6354 0 1414 I 21 3659 * * 5469 * 5065 * 3268 5994 1588 3306 5885 * 3928 4779 6470 3794 3971 6166 4832 21 20 6163 * 0 * 984 1016 6354 1000 1414 N 22 3078 * * * * 3863 3558 5017 4769 4971 * 2418 * 6463 6029 2364 4671 4576 4039 3670 22 23 5972 * 0 * 0 * 6496 1000 1000 H 23 4048 * 3277 3907 5261 5161 5753 5846 4406 4313 5375 3808 4693 3144 3472 2374 5253 5940 * 6741 23 0 * * * * * * 6557 0 0 A 24 3022 * 6416 4477 * 4349 4935 5248 6479 4404 6266 4209 1402 6063 4480 3432 4668 * * 5914 24 0 * * * * * * 6591 0 0 H 25 2256 * * * 3695 4872 6501 3374 * 1766 6249 4323 4863 6265 6793 3922 6231 3662 * * 25 0 * * * * * * 6591 0 0 L 26 5065 * * * 4499 * 4945 1754 6098 1357 6742 * 4865 6080 5542 7078 * 3258 * * 26 0 * * * * * * 6569 0 0 Q 27 3197 * 2543 2871 * 3705 6282 * 5333 4666 6755 4797 4915 3574 3130 3192 4893 6724 * * 27 59 6092 5307 0 * * * 6632 1000 0 L 28 2955 * 5050 4382 6256 * * 3344 3938 3236 5318 5787 5345 3908 3245 4104 3815 3022 * 5817 28 14 6716 * 0 * 0 * 6597 1000 1354 M 29 6119 * 6922 * 6362 * 6216 1614 * 1291 3973 * * 6194 * 6112 * 3670 * 4441 29 0 * * * * * * 6517 0 0 E 30 4187 * 2949 2115 * 3807 6760 5117 4496 * * 4848 * 4091 2374 3547 4818 5406 * * 30 0 * * * * * * 6517 0 0 S 31 3528 * 3607 2834 6801 3825 * * 3065 6922 * 4872 5507 4330 1781 3724 6491 * * * 31 0 * * * * * * 6517 0 0 L 32 6343 6210 * 6545 4756 * * 1266 * 2008 4563 * * 6046 * * 5624 2440 * * 32 12 * 6964 * * * * 6427 0 0 L 33 * 5404 * * 5274 * * 2189 * 663 6096 * * * * * * 3842 * 6038 33 20 * 6190 * * 0 * 6432 0 1000 D 34 3631 6243 2684 2021 * 6364 * * 3643 4178 3744 6350 * 3409 3395 4042 * 5652 * * 34 0 * * * * * 0 6397 0 1000 E 35 3411 * 4820 2857 * 6250 * 6650 5573 3655 5564 5443 * 3805 1084 6537 6520 * * * 35 0 * * * * * 0 6397 0 1000 G 36 4721 * * * * 56 * * * * * * * * * * * * * * 36 0 * * * * * 0 6397 0 1000 K 37 5153 * * 3760 * * 4362 3355 3342 7047 4044 6135 * 2086 4497 7426 * 2023 6983 4998 37 0 * * * * * 0 6439 0 1000 K 38 1468 * 2378 3211 * 6779 * * 3945 * * 5474 * 3880 3240 5576 5239 5612 * * 38 15 * 6574 * * * 0 6439 0 1000 H 39 1986 * 3570 2874 * * 5474 6668 4151 6308 6592 6117 * 2672 4505 2757 4644 * * 6350 39 0 * * * * 842 1178 6428 0 1596 N 40 * * 5363 6200 * 166 * * 5626 * * 5780 * 6282 5666 * * * * * 40 0 * * * * * 0 6439 0 1000 I 41 2924 6136 3891 3259 * * * 3809 4264 2944 * * * 3947 6438 3769 4932 2106 * 6150 41 0 * * * * * 0 6439 0 1000 F 42 * * * * 322 * * 3243 * 4690 6379 * * * * * * 6135 6120 6067 42 21 * 6126 * * * 0 6439 0 1000 K 43 6783 * 6248 * * 6547 6177 * 5030 * * 6269 6775 6204 225 6853 5464 * * * 43 69 * 4421 * * 0 * 6408 0 1667 P 44 2998 * 3605 4353 * 7064 6035 * 4258 5353 * 5715 1632 3109 4211 4159 3892 * * 6757 44 276 * 2524 * * 0 * 6409 0 2732 D 45 5645 * 1376 6707 * 1465 6138 * 4513 * * 4104 * 6484 4942 5693 5084 6147 * * 45 0 * * * * 0 * 6310 0 4435 I 46 4595 4846 * * * * 7018 1857 * 2458 4967 * 5256 * * * 4550 1515 * 7066 46 0 * * * * * * 6478 0 0 D 47 6308 * 551 4879 * 7104 * * * * * 4427 * 7030 6716 2494 5495 * * * 47 0 * * * * * * 6474 0 0 P 48 1503 * * 6253 6495 6457 * 4479 * 5835 * * 1285 * 6528 4830 5013 4378 * 6192 48 0 * * * * * * 6474 0 0 L 49 3533 * 6056 4492 4335 * 5557 4077 4491 2636 4527 6621 * 3990 2236 4816 5798 2873 * * 49 0 * * * * * * 6474 0 0 Q 50 6533 * 1815 3833 3792 * 4303 * 6876 3465 5491 5833 * 2052 4687 7183 5177 4925 * 5290 50 0 * * * * * * 6474 0 0 V 51 6234 * * * 2895 * * 2686 * 1379 5267 * * * * 6255 3438 2558 * 6495 51 0 * * * * * * 6474 0 0 N 52 3999 * * * 4197 6675 2090 5543 * 2873 * 5157 * * * 6983 4317 6356 6977 1419 52 0 * * * * * * 6474 0 0 I 53 3835 * * * 3392 * 6596 2347 * 2207 3042 * 6044 7016 4304 6159 3941 3530 4601 6741 53 0 * * * * * * 6474 0 0 N 54 3407 * 6298 * * * 5121 4786 * 2211 5650 4099 * 4663 * 2056 2191 4846 * * 54 19 6253 * 1585 585 * * 6474 1000 0 I 55 4797 * * * * 6054 * 646 * 2859 4717 * * * * 6428 6316 3188 * * 55 0 * * * * * * 6474 0 0 A 56 2579 6289 * * 6070 * 4281 3119 * 2623 4689 4756 * 6457 * 1965 4560 3468 * * 56 0 * * * * * * 6474 0 0 A 57 1791 * * * * 1686 * * * 4717 * * * * * 1611 5454 6380 * * 57 15 * 6558 * * * * 6474 0 0 L 58 3099 * * * 4238 * * 3805 * 855 5415 * * 4875 * * 4034 3671 * 6795 58 19 * 6273 * * 0 * 6464 0 1000 G 59 3428 1151 6361 * 4844 3274 * * * * * 5409 * * * 2186 3986 * * * 59 0 * * * * * 0 6449 0 1000 G 60 3761 * 4737 4635 2268 5015 * 4110 * 3655 4894 6138 * 5321 6575 4395 3528 4342 5642 2428 60 0 * * * * * 0 6449 0 1000 Y 61 6141 * * * 1057 4653 2998 4638 * 6360 6138 * * 5138 6387 4265 * 6361 * 2565 61 0 * * * * * 0 6449 0 1000 Y 62 4998 6264 * * 3410 6404 3667 4574 * 5570 * 3743 3784 6221 3159 5533 6537 6521 5419 1439 62 0 * * * * * 0 6449 0 1000 L 63 5331 * * * 1605 * 6023 3590 6588 2755 * 5450 6719 * 5322 6450 4149 1988 * 6360 63 0 * * * * * 0 6449 0 1000 I 64 2519 * 5612 * 6435 6650 * 5420 * 4939 4644 3708 * 6223 * 1476 2386 4883 * 6266 64 0 * * * * * 0 6449 0 1000 N 65 2966 * * * * 5275 4001 6542 * * 6158 687 * 4447 6361 5367 4895 6640 6360 * 65 0 * * * * * 0 6449 0 1000 Q 66 3962 * * * 6221 4768 4019 5559 4155 5548 5158 5706 * 3219 1084 4204 5023 * * 6138 66 0 * * * * * 0 6449 0 1000 H 67 3397 * 4333 3587 3888 6131 3209 6202 5533 4962 * 5485 2886 5220 4810 4555 6518 * 6854 2103 67 15 6584 * 1585 585 0 * 6449 1000 1000 T 68 4936 * * * 5412 * * 4889 * 4381 4334 4372 * * * 4636 662 3704 * 6054 68 0 * * * * * * 6474 0 0 L 69 6253 * * * 1973 5997 * 4482 * 1311 3498 6596 * * * 4863 5500 3756 5163 6457 69 0 * * * * * * 6474 0 0 G 70 3377 * 5385 3643 * 3034 5492 5167 3840 6623 * 5257 * 3199 3923 1844 4156 * * 6368 70 18 * 6356 * * * * 6474 0 0 L 71 2145 * * 3782 4620 6597 3613 3211 * 3858 * 4187 6406 4222 5530 3685 3502 4671 7162 4739 71 0 * * * * 0 * 6463 0 1000 V 72 4367 6411 * * 3213 * * 2393 6457 1684 4480 5018 * 6781 * 5432 3633 3226 * 5408 72 53 5405 6355 0 * * * 6474 1469 0 Y 73 4839 * * * 1461 5630 4594 6511 * 2463 4846 * 6100 6199 6132 * 5550 4576 3878 2841 73 37 5312 * 0 * * 0 6457 1382 1000 H 74 4421 * 2654 4081 * 1160 4441 * 4704 6213 * 4079 * 3835 * 4354 6388 * * * 74 23 5989 * 1585 585 0 * 6457 1000 1000 I 75 * * 4507 3215 5509 4065 5655 3339 4113 3837 5525 5312 5613 4358 2743 5371 3808 2842 6813 6529 75 15 6607 * 0 * * * 6474 1000 0 S 76 6289 * 887 3143 * 4898 6324 6054 5083 * * 3409 4701 5359 4891 5539 5033 * * * 76 0 * * * * * * 6474 0 0 M 77 4393 * 6070 5233 3979 * 6596 6551 5387 1530 2561 5480 3152 6324 5351 * 4194 4051 * * 77 22 * 6051 * * * * 6474 0 0 V 78 3234 * 4597 4932 3952 5630 5065 5119 7470 2605 3592 5677 5431 5523 5580 2884 3309 3835 6904 5441 78 0 * * * * 0 * 6454 0 1000 S 79 2884 * 2260 3334 6355 4661 * * * * * 5304 5282 5767 6380 1738 3291 6485 * 6607 79 33 6558 6349 1000 1000 * * 6474 1000 0 P 80 2281 * 2706 3070 6532 7162 6597 * 3624 * * 6015 2038 3576 5739 5802 5789 * * 6042 80 19 6289 * 1000 1000 * 0 6468 1000 1000 Q 81 2846 * 2776 1725 * 6806 6359 5296 4201 6227 * 6608 4800 3462 4525 4085 5451 5599 * 6023 81 23 * 6002 * * * 0 6458 0 1000 A 82 2426 * 4659 4903 4438 3468 6649 3870 * 3538 4112 2498 * 4268 4937 6631 6752 4656 4020 * 82 23 5975 * 0 * 1043 958 6428 1000 1647 L 83 3984 6450 6229 4465 6288 * 6528 3542 4983 2064 5377 6022 * 3557 2379 6395 3934 3692 * 6032 83 15 6597 * 0 * 0 * 6442 1000 1000 E 84 3027 * 3042 1631 * 5157 * * 3549 5473 * 4915 6810 5342 3229 4045 5120 4859 * * 84 0 * * * * * * 6472 0 0 A 85 2199 * 3758 3112 * 3380 3331 * 4123 6525 * 6006 * 3366 2850 4781 5521 5683 * * 85 0 * * * * * * 6472 0 0 R 86 * * * * 6535 6470 3470 5301 * 3256 3956 6301 * 5143 1561 6496 * 4728 3034 2811 86 0 * * * * * * 6471 0 0 R 87 3211 * * 6703 * 5047 6614 4187 2838 3012 * 6280 * * 1376 4952 4006 5038 * * 87 0 * * * * * * 6471 0 0 K 88 2535 * 3407 2157 * 5376 5842 7217 3582 6736 * 5509 * 2619 2899 5814 4997 * * * 88 0 * * * * * * 6471 0 0 V 89 4614 * * 4071 3051 * 1564 6541 * 2838 3616 * * 3716 6311 5467 5090 4483 * 5424 89 0 * * * * * * 6471 0 0 I 90 2152 * * * * * 5378 1714 * 4255 5014 4635 * * * 5424 4548 1962 * * 90 0 * * * * * * 6471 0 0 K 91 4045 4294 * 6277 4712 4649 5508 2515 4832 3157 * * 6016 3452 * 5001 5059 1809 * * 91 0 * * * * * * 6444 0 0 E 92 3645 * 969 2845 * * 6517 * 5247 6198 * 5360 * 3836 4082 4910 5649 6308 * * 92 0 * * * * * * 6444 0 0 T 93 3442 * * * 3737 * * 3951 * 1879 2868 * * 5517 6251 4658 2599 3059 * * 93 14 * 6707 * * * * 6444 0 0 I 94 4320 * * * 6021 * * 1629 * 2694 * * * * * * 3873 1364 * * 94 0 * * * * 0 * 6442 0 1000 L 95 6348 6765 * 6450 6785 * * 3892 5845 584 3692 6881 * * 4708 * 6308 4067 6685 * 95 0 * * * * * * 6332 0 0 S 96 1640 6415 * 5263 * 3280 5861 * * 6460 * 4474 * 5940 1876 2853 4730 * * * 96 0 * * * * * * 6300 0 0 W 97 3054 * * * 2697 2395 6694 5758 * 3578 6757 * * * 5174 4427 5827 6380 4968 1845 97 0 * * * * * * 6244 0 0 L 98 * 4371 * * * * * 3716 * 887 6468 * * * * * * 1716 * 5690 98 17 * 6391 * * * * 6231 0 0 L 99 6464 * * * * 4169 * 5642 5278 2791 4765 * * 6165 1825 4957 1739 3677 * * 99 0 * * * * * 0 6176 0 1000 V 100 1610 5639 * 5636 * 4663 5302 4776 4929 3683 * 6337 5361 5534 5616 3053 3515 3599 * 4294 100 37 5296 * 1585 585 0 * 6103 1000 1000 D 101 3956 * 2591 2650 * 3333 4497 * 5518 * * 4595 2224 4624 5583 3504 4642 * * * 101 69 4416 * 1430 669 * * 5970 1562 0 P 102 2380 * * 4535 * * * 3198 * 4172 5125 * 1023 4085 * 5595 * * * * 102 0 * * * * * * 5642 0 0 S 103 4662 * 3364 3693 * * * * * * * * 1053 * 3155 2383 * * * * 103 0 * * * * * * 5323 0 0 S 104 2937 * 3137 * * 4170 * 4514 * * * 3407 4439 * 3560 3360 2103 3304 * * 104 0 * * * * * * 5202 0 0 T 105 4438 * 3990 * * 2302 * 4360 * * * * * 4019 * 1969 1633 * * * 105 0 * * * * * * 4788 0 0 A 106 594 * 3711 * * 1937 * * * * * * * * * * * * * * 106 0 * * * * * * 4451 0 0 H 107 * * * * 3282 2996 968 * * * * 2746 * * * * * * * 3166 107 0 * * * * * * 3956 0 0 E 108 * * * 0 * * * * * * * * * * * * * * * * 108 0 * * 0 * * * 2423 0 0 //