Phyre 2 alignment of P68919 with c2b9nZ_

Return to main results | Retrieve Phyre Job Id

Job Description | P68919
Confidence | 99.93% | Date | Thu Jan 5 12:11:13 GMT 2012
Rank | 4 | Aligned Residues | 84
% Identity | 20% | Template | c2b9nZ_
PDB info | PDB header:ribosome | Chain: Z: PDB Molecule:50s ribosomal protein ctc; | PDBTitle: 50s ribosomal subunit from a crystal structure of release factor rf2,2 trnas and mrna bound to the ribosome. this file contains the 50s3 subunit from a crystal structure of release factor rf1, trnas and4 mrna bound to the ribosome and is described in remark 400.
Resolution | 6.76 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |  | . | . | 70 | . | . | . | . | . | . | . | . | . | 80
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | T | I | N | A | E | V | R | K | E | Q | G | K | G | A | S | R | R | L | R | A | A | N | K | F | P | A | I | I | Y | G | G | K | E | A | P | L | A | I | E | L | D | H | D | K | V | M | N | M | Q | A | K | A | E | F | Y | S | E | V | L | T | I | V | V | D | G | . | K | E | I | K | V | K | A | Q | D | V | Q | R | H
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | M | E | L | T | A | K | P | R | T | . | . | . | . | . | . | P | K | Q | K | L | D | E | S | M | I | A | A | V | A | Y | N | K | E | . | N | N | V | S | F | A | L | D | R | K | A | F | D | R | A | F | R | Q | . | Q | S | T | T | G | L | F | D | I | T | V | E | G | G | E | T | F | P | A | L | V | K | A | V | Q | M | D
Template Known Secondary structure |  |  |  |  | B |  |  | S | S |  | . | . | . | . | . | . |  | T | T | T | T | T | T | T |  |  |  | B |  |  | B | B | T | T | . | B |  |  |  |  |  | B |  | T | T | T | T |  |  |  |  |  |  | . |  | T | T | T | S |  |  |  |  |  | S | T | T | T | T |  |  |  |  |  |  | S | B |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1 | . | . | . | . | . | . | . | . |  |  |  |  |  |  | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . |  | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . |  | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | .
|  | 81 | . | . | . | . | . | . | . | . | 90 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | Y | K | P | K | L | Q | H | I | D | F | V | R
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | R | K | R | A | P | I | H | V | D | F | Y | M
Template Known Secondary structure |  | S | S | S | S |  |  |  | S | B | B |  | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 73 | . | . | . | . | . | . | 80 | . | . | . | . | .

Download: | Text version | FASTA pairwise alignment | 3D Model in PDB format

View in Jmol

|  | Close Jmol

Send structure to FirstGlance for more viewing options

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions