233 d2hoxa1 Probab=99.08   E-value=4.4e-07  Score=66.75  Aligned_columns=294  Identities=13%

Q ss_pred             HHHHHHHHHHHCC-------CCEEEEECCCHHHHHHHHHHHCCCCCE--------EEEECCHHHHHHHHHHHHCCCEEEE
Q ss_conf             9999999998298-------832998457108999999985389989--------9992713489999999857986999
Q batch____       169 KDAQKFAAKVFHA-------DKTYFVLNGTSAANKVVTNALLTRGDL--------VLFDRNNHKSNHHGALIQAGATPVY  233 (711)
Q Consensus       169 ~eAq~laA~~ygA-------~~t~FlvNGST~gn~a~i~a~~~~Gd~--------VLv~RN~HKSV~~gALiLsga~Pvy  233 (711)
                      .+-++..+++++.       ++-.-++||+|.++.+++.++++|||.        |++..-+.-.... ++.+.|.....
T Consensus       103 ~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~-~~~~~~~~~~~  181 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFRE-QTKYFDKKGYV  181 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHH-HHHHSCCTTEE
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHH-HHHHCCCCCCC
T ss_conf             89999999998850886788776999468899999999986488861235677435730023778999-99855997444


Q ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHCCCCCCCEEEEECC-CHHHHHHHHHHHHHHHHHCCCEEEEECCC
Q ss_conf             41774744433677700079999999988471133103457627999888-71622775999999998609839998886
Q batch____       234 LEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPYRLAIIQLG-TYDGTVYNARQVIDTVGHLCDYILFDSAW  312 (711)
Q Consensus       234 l~P~~~~~g~ig~i~~~~it~e~i~~~l~~~p~~ka~~~~~~~~vvlTsP-TY~Gv~~Di~~I~~~~h~~~~~lLVDEAH  312 (711)
                      +....+                          ...+....+.++++++|| |=-|.+.+       +.++++.+++||++
T Consensus       182 ~~~d~~--------------------------~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~De~y  228 (425)
T d2hoxa1         182 WAGNAA--------------------------NYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVY  228 (425)
T ss_dssp             EEEEGG--------------------------GGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTT
T ss_pred             CCCCHH--------------------------HHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEECCC
T ss_conf             247988--------------------------999724888579998178888560654-------23239689971432


Q ss_pred             CHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC-CCCHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf             11102573565676321002866674599861110023-54701034631776444311479899999999864788038
Q batch____       313 VGYEQFIPMMADSSPLLLELNENDPGIFVTQSVHKQQA-GFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFY  391 (711)
Q Consensus       313 GAH~~Fhp~~~~~p~~al~~gAD~~~ilvvqS~HKtLp-aLTQtS~LHv~~~~~~~~~~~vd~~rl~~al~~~qSTSPSY  391 (711)
                           +.+.+...++.+-..       +++.|.=|+++ +=....|+.+.+..+        .+++.+.........++-
T Consensus       229 -----~~~~~~~~~~~~~~~-------i~~~S~SK~~g~~GlRiG~~i~~~~~i--------~~~l~~~~~~~~~~~s~~  288 (425)
T d2hoxa1         229 -----YWPHYTPIKYKADED-------ILLFTMSKFTGHSGSRFGWALIKDESV--------YNNLLNYMTKNTEGTPRE  288 (425)
T ss_dssp             -----CSTTTSCCCSCBCCS-------EEEEEHHHHTSCGGGCCEEEEECCHHH--------HHHHHHHHHHHTSSCCHH
T ss_pred             -----CCCCCCCCCCCCCCE-------EEEEECCCCCCCCCCCEEEEEECCHHH--------HHHHHHHHHCCCCCCCHH
T ss_conf             -----343323333456854-------999815510123323101899689899--------999998641057773689


Q ss_pred             HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999999-----9861106999999999999999999730021113543223544222343100022223223454
Q batch____       392 PLFAALDVNAK-----IHEGESGRRLWAECVEIGIEARKAILARCKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEP  466 (711)
Q Consensus       392 lLmASLD~Ar~-----~l~~e~G~~l~~~~i~~~~~fR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (711)
                      .-++.+..=..     ......++++++...+....-|+.+.+.........-.......+..........         
T Consensus       289 ~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~---------  359 (425)
T d2hoxa1         289 TQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPP---------  359 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECC---------
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC---------
T ss_conf             99999999602013456555548999999999999999999999863576300345655432210013778---------


Q ss_pred             CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCEE---EEEECCCCCHHH
Q ss_conf             33333333455774222770699982576666543220288999999999982968663589769---999658879999
Q batch____       467 GAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSI---LFLLTPAESHEK  543 (711)
Q Consensus       467 ~~~~~gf~~~~~~~~~~DP~Ki~I~t~g~~~~~~~~~~~Gi~G~~l~~~L~e~gI~~E~ad~~~v---L~l~s~g~t~~d  543 (711)
                                       -..-+.+.++.-...            .+.++|+++||.+-=.+.+..   .+=+|++.++++
T Consensus       360 -----------------~~~f~w~~~~~~~~~------------~~~~lL~e~GI~v~pGs~FG~~~~~vRiSl~~~~e~  410 (425)
T d2hoxa1         360 -----------------SPSYAWVKCEWEEDK------------DCYQTFQNGRINTQNGVGFEASSRYVRLSLIKTQDD  410 (425)
T ss_dssp             -----------------CCSEEEEEECSGGGC------------SHHHHHHHTTEECEEGGGGTSCTTEEEEECSSCHHH
T ss_pred             -----------------CCCEEEEECCCCCHH------------HHHHHHHHCCEEEECCCCCCCCCCEEEEEECCCHHH
T ss_conf             -----------------761699867898089------------999999966949971702389886599991399899


Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q batch____       544 LAQLVAMLAQF  554 (711)
Q Consensus       544 ~~~L~~aL~~i  554 (711)
                      ++.+++.|.++
T Consensus       411 ld~~l~rL~~~  421 (425)
T d2hoxa1         411 FDQLMYYLKDM  421 (425)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998