229 d2hoxa1 Probab=99.89   E-value=4.2e-22  Score=152.89  Aligned_columns=305  Identities=11%

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHCCCCCCE-------
Q ss_conf             9999998719656654456578689999999874334--------8987999389679999999851489978-------
Q batch____        64 AAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL--------GMEDAILYSSCFDANGGLFETLLGAEDA-------  128 (398)
Q Consensus        64 av~~~~~~~~~~~~~~~~~~g~~~~~~~le~~la~~~--------g~~~~~~~~sGt~a~~~al~~~~~~g~~-------  128 (398)
                      +...++...++...++.+.....+..+++++.++++.        ...++++++++++++.+++.+++.+||.       
T Consensus        77 ~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~  156 (425)
T d2hoxa1          77 KEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPES  156 (425)
T ss_dssp             HHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             21000112455545654566434452899999999988508867887769994688999999999864888612356774


Q ss_pred             -EEECCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEE
Q ss_conf             -9973774036899998659715882588704589999973245787289996088899886115999999985447178
Q batch____       129 -IISDALNHASIIDGVRLCKAKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALV  207 (398)
Q Consensus       129 -v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~i~~l~~~~g~~l  207 (398)
                       +++..+++..+...+...|.+...++ .|.+.++.....      +++++++++++||+|.+.+       |.++|+++
T Consensus       157 ~v~~~~p~y~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~------~~~~~~i~~P~NPtG~v~~-------a~~~~~~~  222 (425)
T d2hoxa1         157 KVVAHAPFYPVFREQTKYFDKKGYVWA-GNAANYVNVSNP------EQYIEMVTSPNNPEGLLRH-------AVIKGCKS  222 (425)
T ss_dssp             EEEECSSCCHHHHHHHHHSCCTTEEEE-EEGGGGTTCSCG------GGEEEEEESSCTTTCCCCC-------CSSTTCEE
T ss_pred             EEEECCHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHCCC------CCEEEEECCCCCCCCEEEE-------EEECCCEE
T ss_conf             357300237789999985599744424-798899972488------8579998178888560654-------23239689


Q ss_pred             EEECCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             7233472454554432034320122322102456665677654200-025431000001346653333345410000000
Q batch____       208 MVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGY-TAARKEVVEWLRQRSRPYLFSNSLAPAIVAASI  286 (398)
Q Consensus       208 i~Dea~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (398)
                      |.||++....+.......      .....+.+.|+..++.|+++++ ...+......+...............+..+...
T Consensus       223 i~De~y~~~~~~~~~~~~------~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~  296 (425)
T d2hoxa1         223 IYDMVYYWPHYTPIKYKA------DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKV  296 (425)
T ss_dssp             EEECTTCSTTTSCCCSCB------CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCC------CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf             971432343323333456------85499981551012332310189968989999999864105777368999999999


Q ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------EECCCCCCEEEEEECCCCHHHH
Q ss_conf             246----------77765556898642458999988987398----------------3325887579999478510899
Q batch____       287 KVL----------EMVEAGSELRDRLWANARQFREQMSAAGF----------------TLAGADHAIIPVMLGDAVVAQK  340 (398)
Q Consensus       287 ~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  340 (398)
                      ...          .........++........+...+...+.                ...+..+.+.|+.++.. ....
T Consensus       297 L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~-~~~~  375 (425)
T d2hoxa1         297 LKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-EDKD  375 (425)
T ss_dssp             HHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-GGCS
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CHHH
T ss_conf             602013456555548999999999999999999999863576300345655432210013778761699867898-0899


Q ss_pred             HHHHHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999978929875147676679846999748889999999999999999997
Q batch____       341 FARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQ  393 (398)
Q Consensus       341 i~~~L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~edid~l~~~l~~i~~~  393 (398)
                      +.+.|.++||.++++..+  +.+.+++|++  +..++|++|++++.|+++.|+
T Consensus       376 ~~~lL~e~GI~v~pGs~F--G~~~~~vRiS--l~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         376 CYQTFQNGRINTQNGVGF--EASSRYVRLS--LIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHHTTEECEEGGGG--TSCTTEEEEE--CSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCEEEECCCCC--CCCCCEEEEE--ECCCHHHHHHHHHHHHHHHHC
T ss_conf             999999669499717023--8988659999--139989999999999998726