27/01/2012 01:40:11 : INFO  : Run start: Fri Jan 27 01:40:11 GMT 2012
27/01/2012 01:40:14 : INFO  : Initialised job
27/01/2012 01:40:15 : INFO  : Renaming log file 'phyre2_20120127_014010.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1f69b33b39a0b9ab/phyre_20120127_014010.log'
27/01/2012 01:40:16 : INFO  : Initialised job:
Sequence
>batch____
MSGYTVKPPTGDTNEQTQFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTS
RSDQQISFGLNVPFGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFSHWMRTDSQSAFRN
SNASYSMSNDLKGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGA
YGNTNVGYSRSGDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTG
IHTDWRGYAILPFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGG
KVLMTLKYGNKSVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGQLQVSWGKDKNSNCI
VEYKLPEVSPGTLLNQQTAICR

27/01/2012 01:40:17 : INFO  : Checked sequence
27/01/2012 01:40:18 : INFO  : Finding homologues with PSI-BLAST
27/01/2012 01:40:19 : INFO  : PSI-BLAST 3 iterations
27/01/2012 01:42:28 : INFO  : PSI-BLAST 5 iterations
27/01/2012 01:44:39 : INFO  : Finished PSI-BLAST
27/01/2012 01:44:40 : INFO  : Running Buildali to generate a3m file
27/01/2012 01:52:19 : INFO  : Converting to HMM
27/01/2012 01:52:22 : INFO  : Calibrating HMM
27/01/2012 01:52:38 : INFO  : Searching HMM database
27/01/2012 02:01:29 : INFO  : Finished buildali
27/01/2012 02:01:30 : INFO  : Predicting secondary structure
27/01/2012 02:01:35 : INFO  : Predicted secondary structure (PSI-Pred)
27/01/2012 02:01:36 : INFO  : Predicting Disordered regions
27/01/2012 02:01:38 : INFO  : Predicted Disorder (Disopred)
27/01/2012 02:01:39 : INFO  : Running memsat_svm check
27/01/2012 02:03:02 : INFO  : Running memsat_svm full
27/01/2012 02:10:07 : INFO  : Predicted Transmembrane (memsat_svm) ID '1f69b33b39a0b9ab'
27/01/2012 02:10:08 : INFO  : Initialising fold library search
27/01/2012 02:10:10 : INFO  : Initialised search input
27/01/2012 02:10:11 : INFO  : Building Ensemble models
27/01/2012 02:10:14 : INFO  : Building hh.c3rfzB_.model.1.pdb
27/01/2012 02:10:24 : INFO  : Building c3rfzB_.1.pdb
27/01/2012 02:10:34 : INFO  : Building c3ohnA_.2.pdb
27/01/2012 02:10:45 : INFO  : Building c2xetB_.3.pdb
27/01/2012 02:10:54 : INFO  : Building c2vqiA_.4.pdb
27/01/2012 02:11:04 : INFO  : Building c3l48B_.5.pdb
27/01/2012 02:11:14 : INFO  : Building c2x5pA_.6.pdb
27/01/2012 02:11:22 : INFO  : Building d1aoza2.7.pdb
27/01/2012 02:11:31 : INFO  : Building d1uwya1.8.pdb
27/01/2012 02:11:40 : INFO  : Building c2nsmA_.9.pdb
27/01/2012 02:11:49 : INFO  : Building c3nadB_.10.pdb
27/01/2012 02:11:59 : INFO  : Building c2kywA_.11.pdb
27/01/2012 02:12:09 : INFO  : Building d1nkga1.12.pdb
27/01/2012 02:12:17 : INFO  : Building d2je6i3.13.pdb
27/01/2012 02:12:25 : INFO  : Building c2ww8A_.14.pdb
27/01/2012 02:12:34 : INFO  : Building d2ey4c1.15.pdb
27/01/2012 02:12:43 : INFO  : Building c2hvyB_.16.pdb
27/01/2012 02:12:54 : INFO  : Building d1ci3m2.17.pdb
27/01/2012 02:13:02 : INFO  : Building d2ja9a2.18.pdb
27/01/2012 02:13:12 : INFO  : Building c3ilaG_.19.pdb
27/01/2012 02:13:21 : INFO  : Building c1h8lA_.20.pdb
27/01/2012 02:13:49 : INFO  : Finished HH model building
27/01/2012 02:13:50 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
27/01/2012 02:14:33 : INFO  : html domain output complete ID '1f69b33b39a0b9ab'
27/01/2012 02:30:43 : INFO  : Run end  : Fri Jan 27 02:30:42 GMT 2012
