225 d2hoxa1 Probab=99.93   E-value=1.8e-24  Score=157.10  Aligned_columns=300  Identities=11%

Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHCCCCCCE-------
Q ss_conf             9999998809766544444478589999999987525--------9986999999999999998504799868-------
Q batch____        61 AWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL--------GYSRALLFISGFAANQAVIAAMMAKEDR-------  125 (384)
Q Consensus        61 a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~--------g~~~~~~~~~g~~a~~~a~~~~~~~gd~-------  125 (384)
                      +...++...+.+..+..+.....+...+|++.++++.        ...++++++|+++++.+++.++.+|||.       
T Consensus        77 ~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~  156 (425)
T d2hoxa1          77 KEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPES  156 (425)
T ss_dssp             HHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             21000112455545654566434452899999999988508867887769994688999999999864888612356774


Q ss_pred             -EECCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf             -9827774036899998559935886079956899999522787069996357588888200899998751037516842
Q batch____       126 -IAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD  204 (384)
Q Consensus       126 -v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~G~~~~~~~i~~l~~~~g~~li~D  204 (384)
                       |++..++|+.+...+...+.+...++.    +.+.+.+..+++++++++++++||+|.+.+       |.++|+++|.|
T Consensus       157 ~v~~~~p~y~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~D  225 (425)
T d2hoxa1         157 KVVAHAPFYPVFREQTKYFDKKGYVWAG----NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYD  225 (425)
T ss_dssp             EEEECSSCCHHHHHHHHHSCCTTEEEEE----EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEE
T ss_pred             EEEECCHHHHHHHHHHHHCCCCCCCCCC----CHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEE
T ss_conf             3573002377899999855997444247----988999724888579998178888560654-------23239689971


Q ss_pred             CCCCCCEECCCCCCCCHHHCCCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             01112512365432100001366210123445556678500045100123311377654333356322102456898875
Q batch____       205 DAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR  284 (384)
Q Consensus       205 e~~~~g~~~~~~~~~~~~~~~~~d~~~~s~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  284 (384)
                      |+|....+.......      +.++++.|++|.++.+|..+................................+...+..
T Consensus       226 e~y~~~~~~~~~~~~------~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~  299 (425)
T d2hoxa1         226 MVYYWPHYTPIKYKA------DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE  299 (425)
T ss_dssp             CTTCSTTTSCCCSCB------CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCC------CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             432343323333456------85499981551012332310189968989999999864105777368999999999602


Q ss_pred             ------------HHHHHHHHHHHHHHHHHHHHHHHHCCC----------------EECCCCCCEEEEEECCCCCHHHHHH
Q ss_conf             ------------321356777777899999999870897----------------6606887579999388610899999
Q batch____       285 ------------SDEGDARREKLAALITRFRAGVQDLPF----------------TLADSCSAIQPLIVGDNSRALQLAE  336 (384)
Q Consensus       285 ------------~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~l~~  336 (384)
                                  ........+.+.++.+.+.+.|.+.+.                ...+..+.++|+.++.. ....+.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~~~~-~~~~~~~  378 (425)
T d2hoxa1         300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE-EDKDCYQ  378 (425)
T ss_dssp             HHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG-GGCSHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-CHHHHHH
T ss_conf             013456555548999999999999999999999863576300345655432210013778761699867898-0899999


Q ss_pred             HHHHCCEEEEEECCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf             9997892998624766657985699974988999999999999862
Q batch____       337 KLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHG  382 (384)
Q Consensus       337 ~L~~~GI~v~~~~~~~~~~~~~~lRi~~~~~~t~edid~~~~~l~~  382 (384)
                      .|.++||.++++..+  ..+.+++|||+..  ++|++|++++.|++
T Consensus       379 lL~e~GI~v~pGs~F--G~~~~~vRiSl~~--~~e~ld~~l~rL~~  420 (425)
T d2hoxa1         379 TFQNGRINTQNGVGF--EASSRYVRLSLIK--TQDDFDQLMYYLKD  420 (425)
T ss_dssp             HHHHTTEECEEGGGG--TSCTTEEEEECSS--CHHHHHHHHHHHHH
T ss_pred             HHHHCCEEEECCCCC--CCCCCEEEEEECC--CHHHHHHHHHHHHH
T ss_conf             999669499717023--8988659999139--98999999999999