16/01/2012 01:55:53 : INFO  : Run start: Mon Jan 16 01:55:53 GMT 2012
16/01/2012 01:55:53 : INFO  : Initialised job
16/01/2012 01:55:53 : INFO  : Renaming log file 'phyre2_20120116_015553.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/1f372a01d8d2cf9d/phyre_20120116_015553.log'
16/01/2012 01:55:53 : INFO  : Initialised job:
Sequence
>batch____
MLVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPHTLIDASGLEVGLPDRQ
MGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGAVDKAKNAGKAVHIMGLLS
AGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPRSAESSLKKFEEKFAALGKGR
VASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADTAVAGLQAAYARDENDEFVKATV
IRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVNADFDGFARKKVVNVDFVMLTEYAA
DIKTAVAYPPASLVNTFGEWMAKNDKTQLRISETEKYAHVTFFFNGGVEESFKGEDRILI
NSPKVATYDLQPEMSSAELTEKLVAAIKSGKYDTIICNYPNGDMVGHTGVMEAAVKAVEA
LDHCVEEVAKAVESVGGQLLITADHGNAEQMRDPATGQAHTAHTNLPVPLIYVGDKNVKA
VEGGKLSDIAPTMLSLMGMEIPQEMTGKPLFIVE

16/01/2012 01:55:53 : INFO  : Checked sequence
16/01/2012 01:55:53 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 01:55:53 : INFO  : PSI-BLAST 3 iterations
16/01/2012 01:58:40 : INFO  : PSI-BLAST 5 iterations
16/01/2012 02:02:29 : INFO  : Finished PSI-BLAST
16/01/2012 02:02:29 : INFO  : Running Buildali to generate a3m file
16/01/2012 02:10:57 : INFO  : Converting to HMM
16/01/2012 02:10:58 : INFO  : Calibrating HMM
16/01/2012 02:11:10 : INFO  : Searching HMM database
16/01/2012 02:20:48 : INFO  : Finished buildali
16/01/2012 02:20:48 : INFO  : Predicting secondary structure
16/01/2012 02:20:48 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 02:20:48 : INFO  : Predicting Disordered regions
16/01/2012 02:20:48 : INFO  : Predicted Disorder (Disopred)
16/01/2012 02:20:48 : INFO  : Running memsat_svm check
16/01/2012 02:27:22 : INFO  : Running memsat_svm full
16/01/2012 02:31:31 : INFO  : Predicted Transmembrane (memsat_svm) ID '1f372a01d8d2cf9d'
16/01/2012 02:31:31 : INFO  : Initialising fold library search
16/01/2012 02:31:31 : INFO  : Initialised search input
16/01/2012 02:31:31 : INFO  : Building Ensemble models
16/01/2012 02:31:31 : INFO  : Building hh.c1o98A_.model.1.pdb
16/01/2012 02:31:32 : INFO  : Building c1o98A_.1.pdb
16/01/2012 02:31:32 : INFO  : Building c3igzB_.2.pdb
16/01/2012 02:31:33 : INFO  : Building d1o98a1.3.pdb
16/01/2012 02:31:33 : INFO  : Building c3iddA_.4.pdb
16/01/2012 02:31:33 : INFO  : Building d1o98a2.5.pdb
16/01/2012 02:31:34 : INFO  : Building c2zktB_.6.pdb
16/01/2012 02:31:34 : INFO  : Building c2i09A_.7.pdb
16/01/2012 02:31:35 : INFO  : Building c3m8yC_.8.pdb
16/01/2012 02:31:35 : INFO  : Building d2i09a1.9.pdb
16/01/2012 02:31:36 : INFO  : Building c3lxqB_.10.pdb
16/01/2012 02:31:36 : INFO  : Building d1fsua_.11.pdb
16/01/2012 02:31:36 : INFO  : Building c3q3qA_.12.pdb
16/01/2012 02:31:37 : INFO  : Building d1hdha_.13.pdb
16/01/2012 02:31:37 : INFO  : Building c3b5qB_.14.pdb
16/01/2012 02:31:38 : INFO  : Building d1auka_.15.pdb
16/01/2012 02:31:38 : INFO  : Building c2qzuA_.16.pdb
16/01/2012 02:31:38 : INFO  : Building c3ed4A_.17.pdb
16/01/2012 02:31:39 : INFO  : Building d1p49a_.18.pdb
16/01/2012 02:31:39 : INFO  : Building c2vqrA_.19.pdb
16/01/2012 02:31:40 : INFO  : Building c2w5tA_.20.pdb
16/01/2012 02:31:43 : INFO  : Finished HH model building
16/01/2012 02:31:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 02:31:47 : INFO  : html domain output complete ID '1f372a01d8d2cf9d'
16/01/2012 04:32:25 : INFO  : Run end  : Mon Jan 16 04:32:25 GMT 2012
