BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (156 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AAS1 Inner membrane protein ylaC n=91 Tax=Enterobacte... 322 3e-87 UniRef50_C8T2F7 Inner membrane protein YlaC n=12 Tax=Enterobacte... 226 2e-58 UniRef50_D0FW64 Conserved uncharacterized protein n=4 Tax=Entero... 139 2e-32 UniRef50_D1NZT2 Inner membrane protein YlaC n=7 Tax=Enterobacter... 123 2e-27 UniRef50_A4TLL7 Membrane protein n=29 Tax=Enterobacteriaceae Rep... 106 2e-22 UniRef50_D0KLH3 Extracytoplasmic function sigma factor YlaC n=8 ... 106 3e-22 UniRef50_C4U755 Putative uncharacterized protein n=5 Tax=Yersini... 103 1e-21 UniRef50_C2LHH3 Inner membrane protein YlaC n=3 Tax=Proteus RepI... 94 1e-18 >UniRef50_P0AAS1 Inner membrane protein ylaC n=91 Tax=Enterobacteriaceae RepID=YLAC_ECO57 Length = 156 Score = 322 bits (824), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS Sbjct: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 Query: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS Sbjct: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 Query: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS Sbjct: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 >UniRef50_C8T2F7 Inner membrane protein YlaC n=12 Tax=Enterobacteriaceae RepID=C8T2F7_KLEPR Length = 156 Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 116/152 (76%), Positives = 126/152 (82%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 MTEIQRLL TI+ LN +EKRDN+PRFSISFIR HPGLF+ MY AF ATL VML+SETL Sbjct: 1 MTEIQRLLIHTIDELNVQEKRDNRPRFSISFIRNHPGLFVAMYAAFLATLVVMLRSETLV 60 Query: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 SVWLLVVLFIL N FFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVP L++ IL S Sbjct: 61 DSVWLLVVLFILFNAFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPRQLIDRILQS 120 Query: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARA 152 P V K QL+KM+ KGELSFYD+FTL RA Sbjct: 121 PDVDSEQKAQLKKMVATKGELSFYDVFTLTRA 152 >UniRef50_D0FW64 Conserved uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=D0FW64_ERWPY Length = 160 Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 1/155 (0%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M E++++L I++LN E+RDNKPRFS F++ HPGL+ MY + T+A++ ++ L Sbjct: 1 MEEVKQILLREIDTLNREEQRDNKPRFSFQFLKTHPGLWASMYGCYALTVALIFTTDFLG 60 Query: 61 G-SVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILN 119 + W V +L++G D+ P+YR+EDID LD RVCYNGEWY R + V IL Sbjct: 61 WPAFWGATVFVLLMSGLMLMDINPKYRFEDIDTLDLRVCYNGEWYYVRTLSQQAVSDILA 120 Query: 120 SPRVADVHKEQLQKMIVRKGELSFYDIFTLARAES 154 V D K+ + K++ KGE+ FYD+F L + Sbjct: 121 GDNVPDNVKQGINKLLSLKGEVDFYDVFHLTWGQK 155 >UniRef50_D1NZT2 Inner membrane protein YlaC n=7 Tax=Enterobacteriaceae RepID=D1NZT2_9ENTR Length = 167 Score = 123 bits (309), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 63/155 (40%), Positives = 92/155 (59%), Gaps = 3/155 (1%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M I+++L + ++++N RE RD KP F+ F+ HP L IGM +A + LA++L Sbjct: 1 MDIIKKILIDDLDAINLREARDGKPHFNSQFLANHPYLCIGM-IAAYLPLAIILWYAPYF 59 Query: 61 GSVWL--LVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAIL 118 G W + +LFI+L FDV P Y ++DI VLD RVCYNGEW+ T V + IL Sbjct: 60 GPYWTAGITILFIVLASVLLFDVKPVYHFDDIGVLDLRVCYNGEWFVTEPVSETALNQIL 119 Query: 119 NSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAE 153 S V K+++ +++ KG LSFYDI+ +A E Sbjct: 120 ESKEVPASIKQEISRLLALKGMLSFYDIYHIAYPE 154 >UniRef50_A4TLL7 Membrane protein n=29 Tax=Enterobacteriaceae RepID=A4TLL7_YERPP Length = 177 Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 15 LNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETL-SGSVWLLVVLFILL 73 +N +EKRD + +F+ F+ KHP L + M V++ L +M + +G + V F+++ Sbjct: 15 INKKEKRDGRLKFNSDFVHKHPYLCLAMLVSYVFVLVLMYLTPYFGTGYMIAFTVFFVVM 74 Query: 74 NGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQLQK 133 + ++ P +++EDI VLD RVCYNGEW+ +R + ++ ILN+ ++D K + + Sbjct: 75 SAILMMEIKPVFKFEDIGVLDLRVCYNGEWFFSRALSTQAIDEILNNKNISDDFKLRFKH 134 Query: 134 MIVRKGELSFYDIFTLA 150 +I KGE+ FYD++ LA Sbjct: 135 IISNKGEIDFYDVYDLA 151 >UniRef50_D0KLH3 Extracytoplasmic function sigma factor YlaC n=8 Tax=Enterobacteriaceae RepID=D0KLH3_PECWW Length = 163 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M E++RLLTE IE +N EKRDNK RFS F++ HP LF M V++ +A++L Sbjct: 6 MDEVKRLLTEEIERINREEKRDNKIRFSRKFMQSHPYLFGAMLVSY-VPVAMILFYAPYF 64 Query: 61 GSVWLL--VVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAIL 118 G +L+ V ++++ D+ P YR+EDID LD RVCYNGEW+ R V ++ ++ Sbjct: 65 GLPYLIGFTVFLLVMSLALSMDINPTYRFEDIDTLDLRVCYNGEWFTIRHVSQDTLDKLI 124 Query: 119 NSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 + V K ++K+ KG++ FYDIF+LA + S Sbjct: 125 RNELVPSAVKAGIEKIQRTKGDVDFYDIFSLAYRQQPS 162 >UniRef50_C4U755 Putative uncharacterized protein n=5 Tax=Yersinia RepID=C4U755_YERAL Length = 176 Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 83/137 (60%), Gaps = 1/137 (0%) Query: 15 LNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETL-SGSVWLLVVLFILL 73 +N +EKRD + +F+ F+ KHP L + M +++ L +M + SG + V F L+ Sbjct: 15 INLKEKRDGRLKFNSDFVYKHPYLCLAMLISYVFVLVLMYLTPYFGSGYMIAFTVFFALM 74 Query: 74 NGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQLQK 133 + ++ P +++EDI +LD RVCYNGEW+ +R + ++ ILN+ ++D K + + Sbjct: 75 STILMMEIKPIFKFEDIGILDLRVCYNGEWFFSRALSTQAIDEILNNKNISDDFKLRFKH 134 Query: 134 MIVRKGELSFYDIFTLA 150 +I KGE+ FYD++ LA Sbjct: 135 IINNKGEIDFYDVYDLA 151 >UniRef50_C2LHH3 Inner membrane protein YlaC n=3 Tax=Proteus RepID=C2LHH3_PROMI Length = 168 Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 1/151 (0%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M ++ +L + +N EKRD KP F+ F++ H L + M +++ A+++ S Sbjct: 1 MNVLKDILERDLARINAAEKRDGKPHFNSQFLKNHIWLCVSMVLSYLLLAALLIYSPYFG 60 Query: 61 G-SVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILN 119 S+ L ++FI++ G FD+ P Y+++DI VLD RVCYNGEWY + + I Sbjct: 61 VISLTLFTLMFIVMAGILLFDIKPIYKFDDIGVLDLRVCYNGEWYTFEKLSDEAINEIRQ 120 Query: 120 SPRVADVHKEQLQKMIVRKGELSFYDIFTLA 150 P + KE + +I K E+ FYD++ +A Sbjct: 121 HPAIPAQIKEDINDIIRTKQEIHFYDVYLIA 151 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D0FW64 Conserved uncharacterized protein n=4 Tax=Entero... 225 3e-58 UniRef50_P0AAS1 Inner membrane protein ylaC n=91 Tax=Enterobacte... 219 3e-56 UniRef50_D1NZT2 Inner membrane protein YlaC n=7 Tax=Enterobacter... 215 4e-55 UniRef50_C8T2F7 Inner membrane protein YlaC n=12 Tax=Enterobacte... 201 6e-51 UniRef50_A4TLL7 Membrane protein n=29 Tax=Enterobacteriaceae Rep... 201 7e-51 UniRef50_C4U755 Putative uncharacterized protein n=5 Tax=Yersini... 198 4e-50 UniRef50_C2LHH3 Inner membrane protein YlaC n=3 Tax=Proteus RepI... 191 5e-48 UniRef50_D0KLH3 Extracytoplasmic function sigma factor YlaC n=8 ... 189 2e-47 Sequences not found previously or not previously below threshold: UniRef50_C6NYS6 Cytochrome d ubiquinol oxidase subunit I n=4 Tax... 38 0.085 CONVERGED! >UniRef50_D0FW64 Conserved uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=D0FW64_ERWPY Length = 160 Score = 225 bits (574), Expect = 3e-58, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M E++++L I++LN E+RDNKPRFS F++ HPGL+ MY + T+A++ ++ L Sbjct: 1 MEEVKQILLREIDTLNREEQRDNKPRFSFQFLKTHPGLWASMYGCYALTVALIFTTDFLG 60 Query: 61 GS-VWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILN 119 W V +L++G D+ P+YR+EDID LD RVCYNGEWY R + V IL Sbjct: 61 WPAFWGATVFVLLMSGLMLMDINPKYRFEDIDTLDLRVCYNGEWYYVRTLSQQAVSDILA 120 Query: 120 SPRVADVHKEQLQKMIVRKGELSFYDIFTLARAES 154 V D K+ + K++ KGE+ FYD+F L + Sbjct: 121 GDNVPDNVKQGINKLLSLKGEVDFYDVFHLTWGQK 155 >UniRef50_P0AAS1 Inner membrane protein ylaC n=91 Tax=Enterobacteriaceae RepID=YLAC_ECO57 Length = 156 Score = 219 bits (557), Expect = 3e-56, Method: Composition-based stats. Identities = 156/156 (100%), Positives = 156/156 (100%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS Sbjct: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 Query: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS Sbjct: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 Query: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS Sbjct: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 >UniRef50_D1NZT2 Inner membrane protein YlaC n=7 Tax=Enterobacteriaceae RepID=D1NZT2_9ENTR Length = 167 Score = 215 bits (548), Expect = 4e-55, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M I+++L + ++++N RE RD KP F+ F+ HP L IGM A+ LA++L Sbjct: 1 MDIIKKILIDDLDAINLREARDGKPHFNSQFLANHPYLCIGMIAAY-LPLAIILWYAPYF 59 Query: 61 GSVW--LLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAIL 118 G W + +LFI+L FDV P Y ++DI VLD RVCYNGEW+ T V + IL Sbjct: 60 GPYWTAGITILFIVLASVLLFDVKPVYHFDDIGVLDLRVCYNGEWFVTEPVSETALNQIL 119 Query: 119 NSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 S V K+++ +++ KG LSFYDI+ +A E + Sbjct: 120 ESKEVPASIKQEISRLLALKGMLSFYDIYHIAYPEIPA 157 >UniRef50_C8T2F7 Inner membrane protein YlaC n=12 Tax=Enterobacteriaceae RepID=C8T2F7_KLEPR Length = 156 Score = 201 bits (512), Expect = 6e-51, Method: Composition-based stats. Identities = 116/152 (76%), Positives = 126/152 (82%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 MTEIQRLL TI+ LN +EKRDN+PRFSISFIR HPGLF+ MY AF ATL VML+SETL Sbjct: 1 MTEIQRLLIHTIDELNVQEKRDNRPRFSISFIRNHPGLFVAMYAAFLATLVVMLRSETLV 60 Query: 61 GSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNS 120 SVWLLVVLFIL N FFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVP L++ IL S Sbjct: 61 DSVWLLVVLFILFNAFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPRQLIDRILQS 120 Query: 121 PRVADVHKEQLQKMIVRKGELSFYDIFTLARA 152 P V K QL+KM+ KGELSFYD+FTL RA Sbjct: 121 PDVDSEQKAQLKKMVATKGELSFYDVFTLTRA 152 >UniRef50_A4TLL7 Membrane protein n=29 Tax=Enterobacteriaceae RepID=A4TLL7_YERPP Length = 177 Score = 201 bits (511), Expect = 7e-51, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 13 ESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS-GSVWLLVVLFI 71 +N +EKRD + +F+ F+ KHP L + M V++ L +M + G + V F+ Sbjct: 13 ARINKKEKRDGRLKFNSDFVHKHPYLCLAMLVSYVFVLVLMYLTPYFGTGYMIAFTVFFV 72 Query: 72 LLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQL 131 +++ ++ P +++EDI VLD RVCYNGEW+ +R + ++ ILN+ ++D K + Sbjct: 73 VMSAILMMEIKPVFKFEDIGVLDLRVCYNGEWFFSRALSTQAIDEILNNKNISDDFKLRF 132 Query: 132 QKMIVRKGELSFYDIFTLARAES 154 + +I KGE+ FYD++ LA + Sbjct: 133 KHIISNKGEIDFYDVYDLAYMQK 155 >UniRef50_C4U755 Putative uncharacterized protein n=5 Tax=Yersinia RepID=C4U755_YERAL Length = 176 Score = 198 bits (504), Expect = 4e-50, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 1/145 (0%) Query: 13 ESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS-GSVWLLVVLFI 71 +N +EKRD + +F+ F+ KHP L + M +++ L +M + G + V F Sbjct: 13 ARINLKEKRDGRLKFNSDFVYKHPYLCLAMLISYVFVLVLMYLTPYFGSGYMIAFTVFFA 72 Query: 72 LLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRVADVHKEQL 131 L++ ++ P +++EDI +LD RVCYNGEW+ +R + ++ ILN+ ++D K + Sbjct: 73 LMSTILMMEIKPIFKFEDIGILDLRVCYNGEWFFSRALSTQAIDEILNNKNISDDFKLRF 132 Query: 132 QKMIVRKGELSFYDIFTLARAESTS 156 + +I KGE+ FYD++ LA S Sbjct: 133 KHIINNKGEIDFYDVYDLAYLPKKS 157 >UniRef50_C2LHH3 Inner membrane protein YlaC n=3 Tax=Proteus RepID=C2LHH3_PROMI Length = 168 Score = 191 bits (486), Expect = 5e-48, Method: Composition-based stats. Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 1/152 (0%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M ++ +L + +N EKRD KP F+ F++ H L + M +++ A+++ S Sbjct: 1 MNVLKDILERDLARINAAEKRDGKPHFNSQFLKNHIWLCVSMVLSYLLLAALLIYSPYFG 60 Query: 61 G-SVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILN 119 S+ L ++FI++ G FD+ P Y+++DI VLD RVCYNGEWY + + I Sbjct: 61 VISLTLFTLMFIVMAGILLFDIKPIYKFDDIGVLDLRVCYNGEWYTFEKLSDEAINEIRQ 120 Query: 120 SPRVADVHKEQLQKMIVRKGELSFYDIFTLAR 151 P + KE + +I K E+ FYD++ +A Sbjct: 121 HPAIPAQIKEDINDIIRTKQEIHFYDVYLIAF 152 >UniRef50_D0KLH3 Extracytoplasmic function sigma factor YlaC n=8 Tax=Enterobacteriaceae RepID=D0KLH3_PECWW Length = 163 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYVAFFATLAVMLQSETLS 60 M E++RLLTE IE +N EKRDNK RFS F++ HP LF M V++ +A++L Sbjct: 6 MDEVKRLLTEEIERINREEKRDNKIRFSRKFMQSHPYLFGAMLVSYV-PVAMILFYAPYF 64 Query: 61 GSVWL--LVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAIL 118 G +L V ++++ D+ P YR+EDID LD RVCYNGEW+ R V ++ ++ Sbjct: 65 GLPYLIGFTVFLLVMSLALSMDINPTYRFEDIDTLDLRVCYNGEWFTIRHVSQDTLDKLI 124 Query: 119 NSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS 156 + V K ++K+ KG++ FYDIF+LA + S Sbjct: 125 RNELVPSAVKAGIEKIQRTKGDVDFYDIFSLAYRQQPS 162 >UniRef50_C6NYS6 Cytochrome d ubiquinol oxidase subunit I n=4 Tax=Gammaproteobacteria RepID=C6NYS6_9GAMM Length = 488 Score = 38.0 bits (87), Expect = 0.085, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 5/104 (4%) Query: 24 KPRFSISFIRKHPGLFIGMYVAFFATLAVM---LQSETLSGSVWLLVVLFILLNGFFFFD 80 + +F+ +RKHP + + F + + + W++ L G Sbjct: 354 RGQFNAQALRKHPWFLRSVVFSGFLPYLAIWCGWWTREIGRQPWVVYNLMRTYQGVSHMS 413 Query: 81 V-YPRYRYEDIDVLDFRVCYNGEWYNTRFVPAALVEAILNSPRV 123 V + + V + V ++G WY V A V+ I S + Sbjct: 414 VGQEIFWFAGYIVFEL-VVWSGAWYFFSRVIAKGVDDIAPSDTL 456 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.318 0.146 0.414 Lambda K H 0.267 0.0447 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 591,310,111 Number of Sequences: 3077464 Number of extensions: 21896792 Number of successful extensions: 96112 Number of sequences better than 1.0e-01: 10 Number of HSP's better than 0.1 without gapping: 16 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 96082 Number of HSP's gapped (non-prelim): 18 length of query: 156 length of database: 1,040,396,356 effective HSP length: 117 effective length of query: 39 effective length of database: 680,333,068 effective search space: 26532989652 effective search space used: 26532989652 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 87 (38.0 bits)