77 d2hoxa1 Probab=100.00  E-value=0  Score=295.41  Aligned_columns=325  Identities=15%

Q ss_pred             CCCCEECCCCCCCCCCCHHHHHHHHHHHHC---CCCCC----CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHEEEECCHH
Q ss_conf             799487545899842899999999999857---86469----98778989999999999997078988833289838837
Q batch____        29 QHQAINLSQGFPDFDGPRYLQERLAHHVAQ---GANQY----APMTGVQALREAIAQKTERLYGYQPDADSDITVTAGAT  101 (386)
Q Consensus        29 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~---~~~~Y----~~~~G~~~lr~aia~~l~~~~g~~~~~~~~I~~t~G~~  101 (386)
                      ...++|++.|+|.|..+-...++...++..   ....|    ....+.++|++.|++..... |....++++|++|+|++
T Consensus        55 ~~~~~~~~~gdp~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~-g~~~~~~~~iv~t~G~~  133 (425)
T d2hoxa1          55 QGCSADVASGDGLFLEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEVV-GNAAAKDRYIVFGVGVT  133 (425)
T ss_dssp             TTCCEECCSCCCGGGHHHHTTSHHHHCCCCCTTTTCSSSCSSCCTTCCHHHHHHHHHHHHHH-TCBCCTTCEEEEESHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCCEEEEECCHH
T ss_conf             65543466788554636641142100011245554565456643445289999999998850-88678877699946889


Q ss_pred             HHHHHHHHHHCCCCCE--------EEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCCCCEEEECCCCC
Q ss_conf             9999999852048979--------99818882689999997167027888666678748889973045687164135432
Q batch____       102 EALYAAITALVRNGDE--------VICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPH  173 (386)
Q Consensus       102 ~~l~~~~~~~~~~gd~--------Vlv~~p~y~~~~~~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (386)
                      ++|.+++.++++|||.        |+++.|+|+.|..+++..|.++..++++.+.       +....+++++++++++||
T Consensus       134 ~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~~~~~~~~~~~~~~d~~~-------~~~~~~~~~~~~~i~~P~  206 (425)
T d2hoxa1         134 QLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDKKGYVWAGNAAN-------YVNVSNPEQYIEMVTSPN  206 (425)
T ss_dssp             HHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCCTTEEEEEEGGG-------GTTCSCGGGEEEEEESSC
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCCCCCCCCCHHH-------HHHHCCCCCEEEEECCCC
T ss_conf             9999999986488861235677435730023778999998559974442479889-------997248885799981788


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHCCCCCCCCEEEEECCCHHHHCCCCCCEE-ECCCH
Q ss_conf             22100268899999999997549438520432212348776741000223488589994132132125753025-03899
Q batch____       174 NPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGY-CVAPA  252 (386)
Q Consensus       174 nptg~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~s~sk~~~~~~~~~g~-~~~~~  252 (386)
                      ||||.+++          +.+|++++|+||+|.+..|.+        .....+++++++|+||.++.+|+|+|| ++.+.
T Consensus       207 NPtG~v~~----------a~~~~~~~i~De~y~~~~~~~--------~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~  268 (425)
T d2hoxa1         207 NPEGLLRH----------AVIKGCKSIYDMVYYWPHYTP--------IKYKADEDILLFTMSKFTGHSGSRFGWALIKDE  268 (425)
T ss_dssp             TTTCCCCC----------CSSTTCEEEEECTTCSTTTSC--------CCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCH
T ss_pred             CCCCEEEE----------EEECCCEEEEECCCCCCCCCC--------CCCCCCCEEEEEECCCCCCCCCCCEEEEEECCH
T ss_conf             88560654----------232396899714323433233--------334568549998155101233231018996898


Q ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf             999888766412778889899999999730-----------7678999999999987789999987389-----------
Q batch____       253 PISAEIRKVHQYLTFSVNTPAQLALADMLR-----------AEPEHYLALPDFYRQKRDILVNALNESR-----------  310 (386)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------  310 (386)
                      .+.+.+.........+++.+.|.++..++.           ....+++..++.+++++..+.+.|...+           
T Consensus       269 ~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~  348 (425)
T d2hoxa1         269 SVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSE  348 (425)
T ss_dssp             HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCE
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99999998641057773689999999996020134565555489999999999999999999998635763003456554


Q ss_pred             ----CEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCEEEEECHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHC
Q ss_conf             ----8996458733999985777899989999999985791999174527888778869999139989999999988509
Q batch____       311 ----LEILPCEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL  386 (386)
Q Consensus       311 ----~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~~~~~~~~iRis~~~~~e~l~~ai~rL~ei  386 (386)
                          +....+++++|+|++++.    ++.+.+.++++++||.++||+.|   +.+.+|+|||+++++|+++++++||+++
T Consensus       349 ~~~~~~~~~~~~~~f~w~~~~~----~~~~~~~~lL~e~GI~v~pGs~F---G~~~~~vRiSl~~~~e~ld~~l~rL~~~  421 (425)
T d2hoxa1         349 YCNYFRRMRPPSPSYAWVKCEW----EEDKDCYQTFQNGRINTQNGVGF---EASSRYVRLSLIKTQDDFDQLMYYLKDM  421 (425)
T ss_dssp             EETTTTEEECCCCSEEEEEECS----GGGCSHHHHHHHTTEECEEGGGG---TSCTTEEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEECCC----CCHHHHHHHHHHCCEEEECCCCC---CCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf             3221001377876169986789----80899999999669499717023---8988659999139989999999999998


