| Secondary structure and disorder prediction |   |
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1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 |
| Sequence |   |
M | T | A | Y | W | L | A | Q | G | V | G | V | I | A | F | L | I | G | I | T | T | F | F | N | R | D | E | R | R | F | K | K | Q | L | S | V | Y | S | A | V | I | G | V | H | F | F | L | L | G | T | Y | P | A | G | A | S | A | I | L | N |
| Secondary structure |   |
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| Disorder |   |
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. | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
| Sequence |   |
A | I | R | T | L | I | T | L | R | T | R | S | L | W | V | M | A | I | F | I | V | L | T | G | G | I | G | L | A | K | F | H | H | P | V | E | L | L | P | V | I | G | T | I | V | S | T | W | A | L | F | C | C | K | G | L | T | M | R | C |
| Secondary structure |   |
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. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 |
| Sequence |   |
V | M | W | F | S | T | C | C | W | V | I | H | N | F | W | A | G | S | I | G | G | T | M | I | E | G | S | F | L | L | M | N | G | L | N | I | I | R | F | W | R | M | Q | K | R | G | I | D | P | F | K | V | E | K | T | P | S | A | V | D |
| Secondary structure |   |
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| Disorder confidence |   |
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. | . | . |
| Sequence |   |
E | R | G |
| Secondary structure |   |
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| SS confidence |   |
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| Disorder |   |
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| Disorder confidence |   |
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| Confidence Key |
| High(9) |   |
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Low (0) |
| ? | Disordered |
  | Alpha helix |
  | Beta strand |
Hover over an aligned region to see model and summary info
Please note, only up to the top 20 hits are modelled to reduce computer load
|
| 1 |
|
PDB 2dch chain X
Region: 158 - 178 Aligned: 21 Modelled: 21 Confidence: 14.0% Identity: 38% PDB header:hydrolase Chain: X: PDB Molecule:putative homing endonuclease;
PDBTitle: crystal structure of archaeal intron-encoded homing endonuclease i-2 tsp061i
Phyre2
| 2 |
|
PDB 1sfu chain A
Region: 159 - 177 Aligned: 19 Modelled: 19 Confidence: 10.0% Identity: 16% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain
Phyre2
| 3 |
|
PDB 3mku chain A
Region: 94 - 175 Aligned: 76 Modelled: 82 Confidence: 7.7% Identity: 21% PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
Phyre2
| 4 |
|
PDB 3lj4 chain I
Region: 172 - 183 Aligned: 12 Modelled: 12 Confidence: 7.1% Identity: 33% PDB header:viral protein Chain: I: PDB Molecule:portal protein;
PDBTitle: bacteriophage p22 portal protein bound to middle tail factor gp4. this2 file contain the first biological assembly
Phyre2
| 5 |
|
PDB 1xrd chain A domain 1
Region: 25 - 49 Aligned: 25 Modelled: 25 Confidence: 6.1% Identity: 16% Fold: Light-harvesting complex subunits Superfamily: Light-harvesting complex subunits Family: Light-harvesting complex subunits
Phyre2
| 6 |
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PDB 1xmk chain A domain 1
Region: 159 - 176 Aligned: 18 Modelled: 18 Confidence: 5.4% Identity: 17% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Z-DNA binding domain
Phyre2
| 7 |
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PDB 1v54 chain F
Region: 162 - 182 Aligned: 21 Modelled: 21 Confidence: 5.3% Identity: 33% Fold: Rubredoxin-like Superfamily: Rubredoxin-like Family: Cytochrome c oxidase Subunit F
Phyre2
| 8 |
|
PDB 3be3 chain A
Region: 160 - 181 Aligned: 22 Modelled: 22 Confidence: 5.3% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a protein belonging to pfam duf16532 from bordetella bronchiseptica
Phyre2
|
| Detailed template information |   |
| Binding site prediction |   |
Due to computational demand, binding site predictions are not run for batch jobs
If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite
| Transmembrane helix prediction |   |
Transmembrane helices have been predicted in your sequence to adopt the topology shown below

Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
| If you use the binding site
predictions from 3DLigandSite, please also cite: |
| 3DLigandSite: predicting ligand-binding sites using similar structures. |
| Wass MN, Kelley LA and Sternberg
MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed] |
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