Phyre 2 alignment of P77607 with c3m1eA_

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Job Description | P77607
Confidence | 60.28% | Date | Thu Jan 5 12:30:58 GMT 2012
Rank | 291 | Aligned Residues | 32
% Identity | 22% | Template | c3m1eA_
PDB info | PDB header:transcription regulator | Chain: A: PDB Molecule:hth-type transcriptional regulator benm; | PDBTitle: crystal structure of benm_dbd
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 196 | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | R | D | I | T | I | L | K | K | G | G | F | T | Q | A | E | I | A | K | K | L | S | I | S | L | S | T | V | K | R | H | W | N | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | Y | F | V | A | V | V | E | E | Q | . | S | F | T | K | A | A | D | K | L | C | I | A | Q | P | P | L | S | R | Q | I | Q | N
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  | T | . |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 7 | . | . | 10 | . | . | . | . | . | . |  | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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