Phyre 2 alignment of P77607 with c3mkzU_

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Job Description | P77607
Confidence | 72.32% | Date | Thu Jan 5 12:30:58 GMT 2012
Rank | 242 | Aligned Residues | 32
% Identity | 19% | Template | c3mkzU_
PDB info | PDB header:dna-binding protein/dna | Chain: U: PDB Molecule:protein sopb; | PDBTitle: structure of sopb(155-272)-18mer complex, p21 form
Resolution | 2.98 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 195 | . | . | . | . | 200 | . | . | . | . |  | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | R | D | I | T | I | L | K | K | G | . | G | F | T | Q | A | E | I | A | K | K | L | S | I | S | L | S | T | V | K | R | H | W
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Q | R | Y | A | S | R | L | Q | N | E | F | A | G | N | I | S | A | L | A | D | A | E | N | I | S | R | K | I | I | T | R | C | I
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  | T | T | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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