BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (200 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q9JMT4 Uncharacterized membrane protein yuaF n=1 Tax=Es... 404 e-112 UniRef50_D2T9K2 Uncharacterized membrane protein yuaF n=3 Tax=Er... 44 0.004 >UniRef50_Q9JMT4 Uncharacterized membrane protein yuaF n=1 Tax=Escherichia coli K-12 RepID=YUAF_ECOLI Length = 200 Score = 404 bits (1039), Expect = e-112, Method: Compositional matrix adjust. Identities = 200/200 (100%), Positives = 200/200 (100%) Query: 1 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE 60 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE Sbjct: 1 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE 60 Query: 61 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS 120 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS Sbjct: 61 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS 120 Query: 121 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI 180 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI Sbjct: 121 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI 180 Query: 181 IASSTEEYHILLTNQRRYYV 200 IASSTEEYHILLTNQRRYYV Sbjct: 181 IASSTEEYHILLTNQRRYYV 200 >UniRef50_D2T9K2 Uncharacterized membrane protein yuaF n=3 Tax=Erwinia RepID=D2T9K2_ERWPY Length = 200 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 11/199 (5%) Query: 1 MYCINTDCTYTKIAIEQ-LLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRK 59 M + +DC Y ++A+++ +L+E + +C + + D+R+ + A K + F + Sbjct: 1 MMHVISDCVYFELAVKKTILNESKM--KEWCEKLVVIDMRYLSSPEDALKRVMTFSDLFG 58 Query: 60 ENIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYH- 118 + L D S E N F +D + + ++ L+ L L C +L GL H Sbjct: 59 GHYFVLIGDLSNVSSESYENNFLIDARLGMADFVHQLRTLTLRKITLGQCTTWLTGLIHH 118 Query: 119 ------ISVFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSL 172 IS+ T ++ I A + K S A + + L ++ +T+ ++L + + + L Sbjct: 119 KDKSQGISL-TNMEKKIRALVFKNLSVANMASRLMLSNKTIYSHLNNMKNKYKAHSLNFL 177 Query: 173 YKYIIDNIIASSTEEYHIL 191 Y I + + E H L Sbjct: 178 YLKIQNGESPQCSREQHEL 196 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q9JMT4 Uncharacterized membrane protein yuaF n=1 Tax=Es... 366 e-100 Sequences not found previously or not previously below threshold: UniRef50_D2T9K2 Uncharacterized membrane protein yuaF n=3 Tax=Er... 44 0.004 CONVERGED! >UniRef50_Q9JMT4 Uncharacterized membrane protein yuaF n=1 Tax=Escherichia coli K-12 RepID=YUAF_ECOLI Length = 200 Score = 366 bits (940), Expect = e-100, Method: Composition-based stats. Identities = 200/200 (100%), Positives = 200/200 (100%) Query: 1 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE 60 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE Sbjct: 1 MYCINTDCTYTKIAIEQLLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRKE 60 Query: 61 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS 120 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS Sbjct: 61 NIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYHIS 120 Query: 121 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI 180 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI Sbjct: 121 VFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSLYKYIIDNI 180 Query: 181 IASSTEEYHILLTNQRRYYV 200 IASSTEEYHILLTNQRRYYV Sbjct: 181 IASSTEEYHILLTNQRRYYV 200 >UniRef50_D2T9K2 Uncharacterized membrane protein yuaF n=3 Tax=Erwinia RepID=D2T9K2_ERWPY Length = 200 Score = 43.8 bits (102), Expect = 0.004, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 11/199 (5%) Query: 1 MYCINTDCTYTKIAIEQ-LLHEKYFDDRRYCHSIKIYDLRFFKIEDVAYKLIQLFKERRK 59 M + +DC Y ++A+++ +L+E + +C + + D+R+ + A K + F + Sbjct: 1 MMHVISDCVYFELAVKKTILNESKM--KEWCEKLVVIDMRYLSSPEDALKRVMTFSDLFG 58 Query: 60 ENIIFLCSDRFIHSKEKPRNIFFLDTKDSIRNWSRHLKKLRYCNSNLLICFLFLCGLYH- 118 + L D S E N F +D + + ++ L+ L L C +L GL H Sbjct: 59 GHYFVLIGDLSNVSSESYENNFLIDARLGMADFVHQLRTLTLRKITLGQCTTWLTGLIHH 118 Query: 119 ------ISVFTGKKQVIIACIKKGFSFAEIVNFLNINARTLVNYLGGLTTYFILPYSDSL 172 IS+ T ++ I A + K S A + + L ++ +T+ ++L + + + L Sbjct: 119 KDKSQGISL-TNMEKKIRALVFKNLSVANMASRLMLSNKTIYSHLNNMKNKYKAHSLNFL 177 Query: 173 YKYIIDNIIASSTEEYHIL 191 Y I + + E H L Sbjct: 178 YLKIQNGESPQCSREQHEL 196 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.331 0.145 0.448 Lambda K H 0.267 0.0458 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,009,441,802 Number of Sequences: 3077464 Number of extensions: 51908808 Number of successful extensions: 166923 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 3 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 166917 Number of HSP's gapped (non-prelim): 10 length of query: 200 length of database: 1,040,396,356 effective HSP length: 122 effective length of query: 78 effective length of database: 664,945,748 effective search space: 51865768344 effective search space used: 51865768344 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 90 (39.1 bits)