Phyre 2 Results for Q9JMT4

Email | l.a.kelley@imperial.ac.uk
Description | Q9JMT4
Date | Thu Jan 5 12:38:09 GMT 2012
Unique Job ID | 1d2b5dea1f46d245

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1fsea_ |
|  | 48.8 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
2 | d1p4wa_ |
|  | 45.9 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
3 | c2rnjA_ |
|  | 44.2 | 26 | PDB header:transcription Chain: A: PDB Molecule:response regulator protein vrar; PDBTitle: nmr structure of the s. aureus vrar dna binding domain
4 | d1sqwa2 |
|  | 38.4 | 32 | Fold:Cystatin-like Superfamily:Pre-PUA domain Family:Nip7p homolog, N-terminal domain
5 | c1zljE_ |
|  | 30.9 | 19 | PDB header:transcription Chain: E: PDB Molecule:dormancy survival regulator; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
6 | c2krfB_ |
|  | 30.8 | 29 | PDB header:transcription Chain: B: PDB Molecule:transcriptional regulatory protein coma; PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
7 | d1yioa1 |
|  | 30.3 | 22 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
8 | d1rp3a2 |
|  | 28.7 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
9 | c2jpcA_ |
|  | 26.4 | 21 | PDB header:dna binding protein Chain: A: PDB Molecule:ssrb; PDBTitle: ssrb dna binding protein
10 | d1a04a1 |
|  | 22.8 | 15 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
11 | d1l3la1 |
|  | 21.5 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:C-terminal effector domain of the bipartite response regulators Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
12 | c3cloC_ |
|  | 20.3 | 28 | PDB header:transcription regulator Chain: C: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
13 | c1x3uA_ |
|  | 19.3 | 17 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein fixj; PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
14 | d1nh2b_ |
|  | 15.9 | 17 | Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain
15 | d1or7a1 |
|  | 15.2 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain
16 | c2latA_ |
|  | 13.3 | 50 | PDB header:membrane protein Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein PDBTitle: solution structure of a human minimembrane protein ost4
17 | c3hugA_ |
|  | 13.1 | 31 | PDB header:transcription/membrane protein Chain: A: PDB Molecule:rna polymerase sigma factor; PDBTitle: crystal structure of mycobacterium tuberculosis anti-sigma factor rsla2 in complex with -35 promoter binding domain of sigl
18 | d2ixoa1 |
|  | 13.1 | 23 | Fold:PTPA-like Superfamily:PTPA-like Family:PTPA-like
19 | c2pcoA_ |
|  | 12.6 | 78 | PDB header:toxin Chain: A: PDB Molecule:latarcin-1; PDBTitle: spatial structure and membrane permeabilization for2 latarcin-1, a spider antimicrobial peptide
20 | d1gxla_ |
|  | 12.3 | 21 | Fold:Smc hinge domain Superfamily:Smc hinge domain Family:Smc hinge domain
21 | d1nvpb_ |
| not modelled | 11.6 | 22 | Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain
22 | c1nvpB_ |
| not modelled | 11.6 | 22 | PDB header:transcription/dna Chain: B: PDB Molecule:transcription initiation factor iia alpha chain; PDBTitle: human tfiia/tbp/dna complex
23 | c3sztB_ |
| not modelled | 11.5 | 22 | PDB header:transcription Chain: B: PDB Molecule:quorum-sensing control repressor; PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
24 | c3c3wB_ |
| not modelled | 7.9 | 17 | PDB header:transcription Chain: B: PDB Molecule:two component transcriptional regulatory protein devr; PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
25 | c2x3gA_ |
| not modelled | 7.8 | 80 | PDB header:viral protein Chain: A: PDB Molecule:sirv1 hypothetical protein orf119; PDBTitle: crystal structure of the hypothetical protein orf119 from2 sulfolobus islandicus rod-shaped virus 1
26 | d1u1ha1 |
| not modelled | 7.7 | 29 | Fold:TIM beta/alpha-barrel Superfamily:UROD/MetE-like Family:Cobalamin-independent methionine synthase
27 | d1xsva_ |
| not modelled | 6.9 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:YlxM/p13-like
28 | c2uvpB_ |
| not modelled | 6.5 | 58 | PDB header:unknown function Chain: B: PDB Molecule:hoba; PDBTitle: crystal structure of hoba (hp1230)from helicobacter pylori
29 | d1b0na2 |
| not modelled | 6.5 | 15 | Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like
30 | d1vp7a_ |
| not modelled | 6.4 | 25 | Fold:Spectrin repeat-like Superfamily:XseB-like Family:XseB-like
31 | c3e3vA_ |
| not modelled | 6.1 | 26 | PDB header:recombination Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of recx from lactobacillus salivarius
32 | d1kxpd3 |
| not modelled | 5.9 | 40 | Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like
33 | c3d5lA_ |
| not modelled | 5.9 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:regulatory protein recx; PDBTitle: crystal structure of regulatory protein recx
34 | c3mzyA_ |
| not modelled | 5.9 | 22 | PDB header:rna binding protein Chain: A: PDB Molecule:rna polymerase sigma-h factor; PDBTitle: the crystal structure of the rna polymerase sigma-h factor from2 fusobacterium nucleatum to 2.5a
35 | c2cxaA_ |
| not modelled | 5.7 | 27 | PDB header:transferase Chain: A: PDB Molecule:leucyl/phenylalanyl-trna-protein transferase; PDBTitle: crystal structure of leucyl/phenylalanyl-trna protein2 transferase from escherichia coli
36 | d2cxaa1 |
| not modelled | 5.7 | 27 | Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:LFTR-like
37 | d2go8a1 |
| not modelled | 5.7 | 31 | Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:PG130-like
38 | c2jmlA_ |
| not modelled | 5.6 | 19 | PDB header:transcription Chain: A: PDB Molecule:dna binding domain/transcriptional regulator; PDBTitle: solution structure of the n-terminal domain of cara repressor
39 | c2o8xA_ |
| not modelled | 5.4 | 13 | PDB header:transcription Chain: A: PDB Molecule:probable rna polymerase sigma-c factor; PDBTitle: crystal structure of the "-35 element" promoter recognition domain of2 mycobacterium tuberculosis sigc
40 | c3ltiA_ |
| not modelled | 5.3 | 36 | PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase subunit beta; PDBTitle: crystal structure of the escherichia coli rna polymerase beta subunit2 beta2-betai4 domains
41 | c1u22A_ |
| not modelled | 5.3 | 29 | PDB header:transferase Chain: A: PDB Molecule:5-methyltetrahydropteroyltriglutamate-- PDBTitle: a. thaliana cobalamine independent methionine synthase
42 | c3zr8X_ |
| not modelled | 5.2 | 31 | PDB header:protein binding Chain: X: PDB Molecule:avr3a11; PDBTitle: crystal structure of rxlr effector avr3a11 from phytophthora capsici
43 | c2lc2A_ |
| not modelled | 5.1 | 33 | PDB header:protein binding Chain: A: PDB Molecule:avr3a4; PDBTitle: solution structure of the rxlr effector p. capsici avr3a4
44 | c2a7uB_ |
| not modelled | 5.1 | 13 | PDB header:hydrolase Chain: B: PDB Molecule:atp synthase delta chain; PDBTitle: nmr solution structure of the e.coli f-atpase delta subunit n-terminal2 domain in complex with alpha subunit n-terminal 22 residues
45 | d1abva_ |
| not modelled | 5.1 | 13 | Fold:ATPD N-terminal domain-like Superfamily:N-terminal domain of the delta subunit of the F1F0-ATP synthase Family:N-terminal domain of the delta subunit of the F1F0-ATP synthase