Phyre 2 alignment of Q9JMT4 with c3g1jA_

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Job Description | Q9JMT4
Confidence | 5.01% | Date | Thu Jan 5 12:38:09 GMT 2012
Rank | 46 | Aligned Residues | 29
% Identity | 17% | Template | c3g1jA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:integron cassette protein; | PDBTitle: structure from the mobile metagenome of vibrio cholerae.2 integron cassette protein vch_cass4.
Resolution | 1.70 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | I | H | S | K | E | K | P | R | N | I | F | F | L | D | T | K | D | S | I | R | N | W | S | R | H | L | K | K
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | F | D | K | N | G | S | E | R | Q | I | X | L | C | V | R | P | E | F | Q | X | E | I | A | H | H | L | D | S
Template Known Secondary structure |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  | S | T | T | T | T |  |  |  |  | T |  | G | G | G
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 56 | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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