Phyre 2 alignment of Q9JMT4 with c2rnjA_

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Job Description | Q9JMT4
Confidence | 44.16% | Date | Thu Jan 5 12:38:09 GMT 2012
Rank | 3 | Aligned Residues | 39
% Identity | 26% | Template | c2rnjA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:response regulator protein vrar; | PDBTitle: nmr structure of the s. aureus vrar dna binding domain
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 119 | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | I | S | V | F | T | G | K | K | Q | V | I | I | A | C | I | K | K | G | F | S | F | A | E | I | V | N | F | L | N | I | N | A | R | T | L | V | N | Y | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | E | M | L | T | E | R | E | M | E | I | L | L | L | I | A | K | G | Y | S | N | Q | E | I | A | S | A | S | H | I | T | I | K | T | V | K | T | H | V
Template Known Secondary structure |  | G | G | G |  |  | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  | T | T |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 145 | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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