Phyre 2 alignment of Q9JMT4 with c3rnvA_

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Job Description | Q9JMT4
Confidence | 3.02% | Date | Thu Jan 5 12:38:09 GMT 2012
Rank | 71 | Aligned Residues | 26
% Identity | 27% | Template | c3rnvA_
PDB info | PDB header:hydrolase | Chain: A: PDB Molecule:helper component proteinase; | PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | K | L | R | Y | C | N | S | N | L | L | I | C | F | L | F | L | C | G | L | Y | H | I | S | V | F | T
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | E | G | Y | C | Y | I | N | I | F | L | A | M | L | V | N | V | K | E | S | Q | A | K | E | F | T
Template Known Secondary structure |  |  | T | T |  | T | T |  |  |  |  |  |  |  | G | G | G | S |  | G | G | G |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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